# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|397779167|ref|YP_006543640.1| - 1.8e-24 85.2 0.3 5.1e-24 83.8 0.2 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|397779167|ref|YP_006543640.1| - 1.1e-12 48.1 0.0 3e-12 46.8 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|397779167|ref|YP_006543640.1| - 6.6e-11 42.5 0.0 1.9e-10 41.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|397779167|ref|YP_006543640.1| - 1.4e-09 38.2 0.2 2e-08 34.5 0.1 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|397779167|ref|YP_006543640.1| - 6.6e-05 22.7 0.0 0.00015 21.5 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|397779167|ref|YP_006543640.1| - 0.00015 21.4 0.0 0.00028 20.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DEAD PF00270.24 gi|397779167|ref|YP_006543640.1| - 0.00035 20.1 2.5 0.18 11.3 0.0 3.0 2 1 0 3 3 3 2 DEAD/DEAH box helicase Sigma54_activat PF00158.21 gi|397779167|ref|YP_006543640.1| - 0.0022 17.4 0.1 0.0075 15.7 0.0 1.9 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_25 PF13481.1 gi|397779167|ref|YP_006543640.1| - 0.0058 16.0 0.0 0.012 14.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|397779167|ref|YP_006543640.1| - 0.0063 16.6 0.0 0.014 15.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase KAP_NTPase PF07693.9 gi|397779167|ref|YP_006543640.1| - 0.0077 15.2 0.2 3.4 6.5 0.0 2.3 1 1 0 2 2 2 2 KAP family P-loop domain DUF815 PF05673.8 gi|397779167|ref|YP_006543640.1| - 0.01 14.8 0.0 0.019 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_2 PF07724.9 gi|397779167|ref|YP_006543640.1| - 0.017 15.0 0.1 0.13 12.1 0.1 2.1 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) T2SE PF00437.15 gi|397779167|ref|YP_006543640.1| - 0.018 13.9 0.0 0.033 13.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|397779167|ref|YP_006543640.1| - 0.039 14.7 0.1 0.13 13.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|397779167|ref|YP_006543640.1| - 0.044 13.3 0.2 0.088 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|397779167|ref|YP_006543640.1| - 0.079 13.0 0.0 0.22 11.5 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain AsnC_trans_reg PF01037.16 gi|397779168|ref|YP_006543641.1| - 1e-14 53.9 0.0 1.5e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|397779168|ref|YP_006543641.1| - 1e-09 37.7 1.0 1e-09 37.7 0.7 2.1 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|397779168|ref|YP_006543641.1| - 4.2e-08 32.4 0.2 9.6e-08 31.3 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|397779168|ref|YP_006543641.1| - 0.0057 16.2 0.2 0.013 15.1 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|397779168|ref|YP_006543641.1| - 0.029 14.0 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 MarR family THUMP PF02926.12 gi|397779168|ref|YP_006543641.1| - 0.12 12.2 0.0 0.48 10.2 0.0 1.9 2 0 0 2 2 2 0 THUMP domain Type_III_YscG PF09477.5 gi|397779168|ref|YP_006543641.1| - 0.12 12.4 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial type II secretion system chaperone protein (type_III_yscG) DDRGK PF09756.4 gi|397779168|ref|YP_006543641.1| - 0.13 11.6 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain Aminotran_1_2 PF00155.16 gi|397779169|ref|YP_006543642.1| - 3e-65 220.5 0.0 3.3e-65 220.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|397779169|ref|YP_006543642.1| - 1.1e-07 31.2 0.0 1.8e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|397779169|ref|YP_006543642.1| - 4.2e-07 29.0 0.0 6.6e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.15 gi|397779169|ref|YP_006543642.1| - 8.2e-05 21.3 0.0 0.00011 20.8 0.0 1.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Cys_Met_Meta_PP PF01053.15 gi|397779169|ref|YP_006543642.1| - 0.00013 20.4 0.0 0.00019 19.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|397779169|ref|YP_006543642.1| - 0.00024 20.3 0.0 0.00038 19.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase LCAT PF02450.10 gi|397779169|ref|YP_006543642.1| - 0.047 12.6 0.0 0.067 12.1 0.0 1.1 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase Adenylsucc_synt PF00709.16 gi|397779170|ref|YP_006543644.1| - 3.3e-83 279.7 3.9 2.7e-41 141.6 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Trm112p PF03966.11 gi|397779172|ref|YP_006543645.1| - 6e-10 39.3 2.2 1.1e-09 38.5 1.5 1.4 1 1 0 1 1 1 1 Trm112p-like protein Elf1 PF05129.8 gi|397779172|ref|YP_006543645.1| - 0.0028 17.3 0.1 0.0029 17.2 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|397779172|ref|YP_006543645.1| - 0.0058 16.9 1.8 0.0067 16.6 1.2 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|397779172|ref|YP_006543645.1| - 0.022 14.5 0.1 0.032 14.0 0.1 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain RRN7 PF11781.3 gi|397779172|ref|YP_006543645.1| - 0.041 13.3 1.4 4 7.0 0.1 2.4 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 RNA_POL_M_15KD PF02150.11 gi|397779172|ref|YP_006543645.1| - 0.059 13.0 0.8 0.17 11.5 0.5 1.8 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|397779172|ref|YP_006543645.1| - 0.5 9.7 3.2 1.8 7.9 2.2 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zf-HYPF PF07503.7 gi|397779172|ref|YP_006543645.1| - 0.91 8.9 4.3 11 5.4 1.0 2.4 2 1 0 2 2 2 0 HypF finger DoxX_2 PF13564.1 gi|397779173|ref|YP_006543646.1| - 0.013 15.4 1.1 0.018 15.0 0.7 1.2 1 0 0 1 1 1 0 DoxX-like family CobD_Cbib PF03186.8 gi|397779174|ref|YP_006543647.1| - 6.3e-89 297.9 1.9 7.7e-89 297.6 1.3 1.0 1 0 0 1 1 1 1 CobD/Cbib protein SOR_SNZ PF01680.12 gi|397779175|ref|YP_006543648.1| - 3.7e-106 353.3 6.9 6.2e-106 352.6 4.8 1.3 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|397779175|ref|YP_006543648.1| - 2e-10 40.1 4.8 1.5e-06 27.4 0.2 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|397779175|ref|YP_006543648.1| - 0.0012 17.7 0.4 0.2 10.4 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|397779175|ref|YP_006543648.1| - 0.0013 17.9 0.3 0.0013 17.9 0.2 2.1 2 1 0 2 2 2 1 Nitronate monooxygenase OMPdecase PF00215.19 gi|397779175|ref|YP_006543648.1| - 0.0043 16.4 0.2 0.55 9.5 0.0 2.4 1 1 1 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family IGPS PF00218.16 gi|397779175|ref|YP_006543648.1| - 0.0057 15.7 0.0 0.042 12.9 0.0 2.2 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase PcrB PF01884.12 gi|397779175|ref|YP_006543648.1| - 0.031 13.5 0.0 0.077 12.2 0.0 1.7 1 0 0 1 1 1 0 PcrB family NanE PF04131.9 gi|397779175|ref|YP_006543648.1| - 0.031 13.2 1.9 0.09 11.7 0.0 2.3 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase PPDK_N PF01326.14 gi|397779175|ref|YP_006543648.1| - 0.038 13.0 1.4 1.8 7.5 0.0 2.2 1 1 1 2 2 2 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MttA_Hcf106 PF02416.11 gi|397779175|ref|YP_006543648.1| - 0.061 12.4 1.0 1.2 8.2 0.0 2.4 2 0 0 2 2 2 0 mttA/Hcf106 family His_biosynth PF00977.16 gi|397779175|ref|YP_006543648.1| - 0.064 12.5 1.2 0.54 9.4 0.0 2.5 2 1 0 2 2 2 0 Histidine biosynthesis protein HTH_20 PF12840.2 gi|397779176|ref|YP_006543649.1| - 2.6e-12 46.3 0.1 4.5e-12 45.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|397779176|ref|YP_006543649.1| - 8.8e-12 44.5 0.1 1.3e-11 44.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|397779176|ref|YP_006543649.1| - 0.00012 22.0 0.0 0.00018 21.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF318 PF03773.8 gi|397779177|ref|YP_006543650.1| - 9.3e-76 254.7 23.2 1.3e-75 254.2 16.1 1.2 1 0 0 1 1 1 1 Predicted permease Thioredoxin_3 PF13192.1 gi|397779179|ref|YP_006543652.1| - 1.5e-26 92.0 0.3 1.6e-26 91.8 0.2 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|397779179|ref|YP_006543652.1| - 0.0077 16.2 0.1 0.018 15.0 0.1 1.7 1 1 0 1 1 1 1 Glutaredoxin PTS_IIB PF02302.12 gi|397779179|ref|YP_006543652.1| - 0.029 14.8 0.1 0.032 14.7 0.1 1.1 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIB subunit Thioredoxin PF00085.15 gi|397779179|ref|YP_006543652.1| - 0.033 13.8 0.0 0.033 13.8 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_4 PF13462.1 gi|397779179|ref|YP_006543652.1| - 0.15 12.0 0.0 2.6 8.0 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin Thioredoxin_3 PF13192.1 gi|397779180|ref|YP_006543653.1| - 1.4e-22 79.2 0.3 1.6e-22 79.1 0.2 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|397779180|ref|YP_006543653.1| - 0.00045 20.1 0.0 0.00086 19.2 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|397779180|ref|YP_006543653.1| - 0.0041 17.1 0.0 1.7 8.6 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin Thioredoxin PF00085.15 gi|397779180|ref|YP_006543653.1| - 0.059 13.0 0.0 0.067 12.8 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin DUF2703 PF10865.3 gi|397779181|ref|YP_006543654.1| - 5.2e-41 139.3 1.7 5.2e-41 139.3 1.2 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF2703) DGC PF08859.6 gi|397779181|ref|YP_006543654.1| - 7e-35 119.2 0.8 1.5e-34 118.1 0.6 1.6 1 0 0 1 1 1 1 DGC domain LMWPc PF01451.16 gi|397779182|ref|YP_006543655.1| - 2.1e-18 66.9 0.0 2.5e-18 66.7 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase T6SS_Vgr PF13296.1 gi|397779182|ref|YP_006543655.1| - 0.0091 15.8 0.0 0.0093 15.8 0.0 1.1 1 0 0 1 1 1 1 Putative type VI secretion system Rhs element Vgr DsbD_2 PF13386.1 gi|397779184|ref|YP_006543657.1| - 5.9e-16 58.8 26.9 1e-15 58.0 16.3 2.2 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD PF02683.10 gi|397779184|ref|YP_006543657.1| - 5.2e-08 32.7 17.2 6.9e-08 32.3 11.9 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region HTH_Tnp_1_2 PF13022.1 gi|397779184|ref|YP_006543657.1| - 0.013 15.3 0.0 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase SpoIIIAC PF06686.6 gi|397779184|ref|YP_006543657.1| - 0.013 15.2 0.4 0.013 15.2 0.3 2.6 3 0 0 3 3 3 0 Stage III sporulation protein AC/AD protein family Ion_trans PF00520.26 gi|397779184|ref|YP_006543657.1| - 0.23 10.6 12.9 2.7 7.1 0.6 3.2 3 0 0 3 3 3 0 Ion transport protein Cad PF03596.8 gi|397779184|ref|YP_006543657.1| - 2.7 7.6 12.9 0.066 12.8 0.5 2.5 2 0 0 2 2 2 0 Cadmium resistance transporter PIRT PF15099.1 gi|397779184|ref|YP_006543657.1| - 4.7 6.4 7.4 0.61 9.3 1.4 2.0 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family DUF3484 PF11983.3 gi|397779185|ref|YP_006543658.1| - 0.13 13.1 0.0 0.19 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3484) P12 PF12669.2 gi|397779185|ref|YP_006543658.1| - 0.19 11.9 5.1 0.23 11.6 3.5 1.3 1 0 0 1 1 1 0 Virus attachment protein p12 family DUF318 PF03773.8 gi|397779186|ref|YP_006543659.1| - 5e-47 160.3 33.3 5.5e-46 156.9 23.1 1.9 1 1 0 1 1 1 1 Predicted permease DUF1656 PF07869.7 gi|397779186|ref|YP_006543659.1| - 0.94 9.3 12.2 0.29 10.9 1.1 3.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1656) SBF PF01758.11 gi|397779187|ref|YP_006543660.1| - 8.8e-56 188.2 13.8 8.8e-56 188.2 9.5 2.3 3 1 0 3 3 3 1 Sodium Bile acid symporter family UPF0154 PF03672.8 gi|397779187|ref|YP_006543660.1| - 6.9 6.3 6.8 0.62 9.7 0.8 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) DUF2703 PF10865.3 gi|397779188|ref|YP_006543661.1| - 1.1e-40 138.3 2.3 1.2e-40 138.1 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF2703) DGC PF08859.6 gi|397779189|ref|YP_006543662.1| - 4.1e-12 45.9 0.0 4.4e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 DGC domain Peripla_BP_2 PF01497.13 gi|397779190|ref|YP_006543663.1| - 2.5e-29 102.0 0.0 3.2e-29 101.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_11 PF08241.7 gi|397779191|ref|YP_006543664.1| - 2.7e-21 75.8 0.0 3.9e-21 75.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397779191|ref|YP_006543664.1| - 3.9e-16 58.9 0.0 5.2e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|397779191|ref|YP_006543664.1| - 6e-15 55.4 0.0 9.2e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397779191|ref|YP_006543664.1| - 1.5e-13 51.3 0.0 2.3e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|397779191|ref|YP_006543664.1| - 5.8e-11 42.4 0.1 1.3e-10 41.3 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397779191|ref|YP_006543664.1| - 1.1e-10 41.8 0.0 1.8e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|397779191|ref|YP_006543664.1| - 3.3e-10 39.4 0.0 4.8e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|397779191|ref|YP_006543664.1| - 2.6e-09 37.0 0.0 3.4e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|397779191|ref|YP_006543664.1| - 4.1e-07 29.5 0.0 6.1e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|397779191|ref|YP_006543664.1| - 0.00037 19.9 0.0 0.00054 19.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 GidB PF02527.10 gi|397779191|ref|YP_006543664.1| - 0.00051 19.2 0.0 0.00076 18.6 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G UPF0020 PF01170.13 gi|397779191|ref|YP_006543664.1| - 0.0015 18.1 0.0 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_16 PF10294.4 gi|397779191|ref|YP_006543664.1| - 0.0022 17.4 0.0 0.0029 17.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase PrmA PF06325.8 gi|397779191|ref|YP_006543664.1| - 0.0025 16.9 0.0 0.0032 16.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|397779191|ref|YP_006543664.1| - 0.0045 16.6 0.0 0.0071 15.9 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_24 PF13578.1 gi|397779191|ref|YP_006543664.1| - 0.0056 17.5 0.0 0.011 16.4 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain CMAS PF02353.15 gi|397779191|ref|YP_006543664.1| - 0.053 12.5 0.0 0.064 12.3 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|397779191|ref|YP_006543664.1| - 0.071 12.1 0.0 0.096 11.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_29 PF03141.11 gi|397779191|ref|YP_006543664.1| - 0.11 10.7 0.0 0.13 10.5 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DNA_ligase_ZBD PF03119.11 gi|397779192|ref|YP_006543665.1| - 0.055 13.1 2.5 0.29 10.8 1.8 2.4 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Peripla_BP_2 PF01497.13 gi|590000580|ref|YP_009001381.1| - 1.1e-07 31.2 0.0 1.4e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Radical_SAM PF04055.16 gi|397779193|ref|YP_006543666.1| - 1.4e-10 41.6 0.0 2.5e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Peripla_BP_2 PF01497.13 gi|397779193|ref|YP_006543666.1| - 0.00047 19.3 0.0 0.00071 18.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Fer4_12 PF13353.1 gi|397779193|ref|YP_006543666.1| - 0.09 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain ABC_tran PF00005.22 gi|397779194|ref|YP_006543667.1| - 6.2e-32 110.7 0.0 8e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397779194|ref|YP_006543667.1| - 5.7e-12 46.1 0.2 2.8e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397779194|ref|YP_006543667.1| - 3.3e-07 29.7 0.0 0.0034 16.6 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|397779194|ref|YP_006543667.1| - 1.2e-06 27.8 0.1 0.029 13.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|397779194|ref|YP_006543667.1| - 3e-05 23.4 0.0 6.5e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|397779194|ref|YP_006543667.1| - 0.00033 21.0 0.0 0.00079 19.8 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|397779194|ref|YP_006543667.1| - 0.00036 20.7 0.0 0.094 12.9 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|397779194|ref|YP_006543667.1| - 0.00043 20.3 0.0 0.00075 19.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|397779194|ref|YP_006543667.1| - 0.0012 18.0 0.1 0.0018 17.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|397779194|ref|YP_006543667.1| - 0.0018 17.7 0.0 0.17 11.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|397779194|ref|YP_006543667.1| - 0.002 18.0 0.1 0.034 14.0 0.1 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|397779194|ref|YP_006543667.1| - 0.0052 16.9 0.2 0.034 14.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|397779194|ref|YP_006543667.1| - 0.034 13.8 0.0 0.061 13.0 0.0 1.6 2 0 0 2 2 1 0 NTPase SH3_2 PF07653.12 gi|397779194|ref|YP_006543667.1| - 0.034 13.6 0.1 0.28 10.6 0.0 2.3 1 1 0 1 1 1 0 Variant SH3 domain MobB PF03205.9 gi|397779194|ref|YP_006543667.1| - 0.042 13.5 0.1 0.078 12.6 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|397779194|ref|YP_006543667.1| - 0.05 12.4 0.0 0.2 10.4 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain MutS_V PF00488.16 gi|397779194|ref|YP_006543667.1| - 0.054 12.9 0.1 4.6 6.5 0.0 2.1 2 0 0 2 2 2 0 MutS domain V AAA_19 PF13245.1 gi|397779194|ref|YP_006543667.1| - 0.055 13.2 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain UPF0079 PF02367.12 gi|397779194|ref|YP_006543667.1| - 0.058 13.0 0.1 0.094 12.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Mg_chelatase PF01078.16 gi|397779194|ref|YP_006543667.1| - 0.064 12.4 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|397779194|ref|YP_006543667.1| - 0.065 12.6 0.0 2 7.7 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain DUF815 PF05673.8 gi|397779194|ref|YP_006543667.1| - 0.074 11.9 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|397779194|ref|YP_006543667.1| - 0.078 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase FecCD PF01032.13 gi|397779195|ref|YP_006543668.1| - 4.6e-86 288.4 32.4 7.2e-86 287.8 22.5 1.3 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|397779195|ref|YP_006543668.1| - 9.4e-06 25.0 17.7 1.4e-05 24.4 12.2 1.3 1 0 0 1 1 1 1 ABC 3 transport family NTPase_1 PF03266.10 gi|397779196|ref|YP_006543669.1| - 2.4e-31 108.7 0.0 2.9e-31 108.4 0.0 1.1 1 0 0 1 1 1 1 NTPase Sulfotransfer_3 PF13469.1 gi|397779196|ref|YP_006543669.1| - 0.13 13.1 2.5 0.22 12.4 1.8 1.4 1 1 0 1 1 1 0 Sulfotransferase family Pro_isomerase PF00160.16 gi|397779197|ref|YP_006543670.1| - 1.1e-47 162.1 0.1 1.3e-47 161.9 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Ribonucleas_3_3 PF14622.1 gi|397779198|ref|YP_006543671.1| - 6.5e-23 81.0 0.0 7.6e-23 80.8 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.21 gi|397779198|ref|YP_006543671.1| - 6.1e-11 42.7 0.0 1.1e-10 41.9 0.0 1.4 1 1 0 1 1 1 1 Ribonuclease III domain MFS_1 PF07690.11 gi|397779199|ref|YP_006543672.1| - 4.4e-30 104.5 72.1 2.3e-19 69.3 24.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF412 PF04217.8 gi|397779199|ref|YP_006543672.1| - 0.057 13.2 0.1 0.15 11.8 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function, DUF412 AMP-binding PF00501.23 gi|397779200|ref|YP_006543673.1| - 9.2e-98 327.3 0.4 1.6e-97 326.5 0.1 1.4 2 0 0 2 2 2 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|397779200|ref|YP_006543673.1| - 5.9e-24 84.8 0.4 1.5e-23 83.4 0.3 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Lactamase_B PF00753.22 gi|397779200|ref|YP_006543673.1| - 0.0055 16.3 0.4 0.065 12.8 0.0 2.4 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily DUF1673 PF07895.6 gi|397779201|ref|YP_006543674.1| - 6.7e-19 68.2 0.0 1.1e-18 67.5 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1673) ABC_membrane_3 PF13748.1 gi|397779201|ref|YP_006543674.1| - 0.047 12.7 0.8 2.9 6.8 0.1 2.2 2 0 0 2 2 2 0 ABC transporter transmembrane region DUF3995 PF13160.1 gi|397779201|ref|YP_006543674.1| - 0.21 11.6 7.7 2.1 8.4 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3995) DUF983 PF06170.7 gi|397779201|ref|YP_006543674.1| - 5.2 7.2 7.8 10 6.3 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF983) HTH_Tnp_4 PF13613.1 gi|397779202|ref|YP_006543675.1| - 0.049 13.1 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_23 PF13384.1 gi|397779202|ref|YP_006543675.1| - 0.079 12.6 0.1 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain DUF2481 PF10654.4 gi|397779202|ref|YP_006543675.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) Na_Pi_cotrans PF02690.10 gi|397779203|ref|YP_006543676.1| - 1.2e-50 170.9 39.6 1.4e-32 112.3 9.8 3.1 2 1 1 3 3 3 2 Na+/Pi-cotransporter PhoU PF01895.14 gi|397779203|ref|YP_006543676.1| - 0.0078 16.6 0.5 0.0078 16.6 0.3 2.1 2 0 0 2 2 2 1 PhoU domain CobU PF02283.11 gi|397779203|ref|YP_006543676.1| - 0.27 10.6 1.7 0.6 9.5 0.1 2.1 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase DUF3671 PF12420.3 gi|397779203|ref|YP_006543676.1| - 2.9 7.9 5.4 0.58 10.1 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function DsbD PF02683.10 gi|397779204|ref|YP_006543677.1| - 1.9e-15 57.0 20.8 2.5e-15 56.6 14.4 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|397779204|ref|YP_006543677.1| - 5.4e-12 45.8 22.8 8.5e-12 45.2 15.4 1.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region ATP_synth_reg PF14960.1 gi|397779206|ref|YP_006543679.1| - 0.052 12.7 0.3 0.081 12.1 0.2 1.2 1 0 0 1 1 1 0 ATP synthase regulation Clp_N PF02861.15 gi|397779207|ref|YP_006543680.1| - 0.0017 18.2 0.1 13 5.7 0.0 3.6 4 0 0 4 4 4 1 Clp amino terminal domain SurA_N_3 PF13624.1 gi|397779207|ref|YP_006543680.1| - 0.0044 17.0 0.5 11 5.9 0.1 3.4 3 0 0 3 3 3 1 SurA N-terminal domain MCE PF02470.15 gi|397779207|ref|YP_006543680.1| - 0.0059 16.5 0.0 0.99 9.4 0.0 2.6 1 1 0 2 2 2 1 mce related protein DUF2963 PF11178.3 gi|397779207|ref|YP_006543680.1| - 0.051 13.0 0.1 6.6 6.2 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2963) PCNP PF15473.1 gi|397779207|ref|YP_006543680.1| - 0.057 13.7 2.0 3.3 8.0 0.1 2.6 2 0 0 2 2 2 0 PEST, proteolytic signal-containing nuclear protein family Lac_bphage_repr PF06543.7 gi|397779207|ref|YP_006543680.1| - 0.06 12.8 0.1 2.3 7.7 0.0 2.8 2 0 0 2 2 2 0 Lactococcus bacteriophage repressor Poly_export PF02563.11 gi|397779207|ref|YP_006543680.1| - 0.092 12.5 0.2 15 5.4 0.0 3.4 3 0 0 3 3 3 0 Polysaccharide biosynthesis/export protein ketoacyl-synt PF00109.21 gi|397779207|ref|YP_006543680.1| - 0.14 11.6 0.1 1.1 8.7 0.1 2.1 1 1 0 1 1 1 0 Beta-ketoacyl synthase, N-terminal domain DUF2758 PF10957.3 gi|397779207|ref|YP_006543680.1| - 0.41 10.4 2.5 5.6 6.8 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2758) Frankia_peptide PF14407.1 gi|397779207|ref|YP_006543680.1| - 0.55 10.0 3.4 49 3.7 0.0 3.9 5 0 0 5 5 5 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. DUF3436 PF11918.3 gi|397779207|ref|YP_006543680.1| - 1.1 9.5 6.4 16 5.8 0.1 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF3436) Defensin_4 PF07936.7 gi|397779208|ref|YP_006543681.1| - 0.27 10.9 3.1 0.38 10.4 0.7 2.3 2 0 0 2 2 2 0 Potassium-channel blocking toxin ABC2_membrane_2 PF12679.2 gi|397779209|ref|YP_006543682.1| - 8.8e-47 159.2 13.0 1.1e-46 159.0 9.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|397779209|ref|YP_006543682.1| - 2.5e-15 56.2 12.8 8.4e-15 54.5 8.8 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|397779209|ref|YP_006543682.1| - 7.4e-09 35.0 14.9 7.4e-09 35.0 10.3 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|397779209|ref|YP_006543682.1| - 1.6e-06 27.5 5.4 1.6e-06 27.5 3.8 2.4 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|397779209|ref|YP_006543682.1| - 3e-05 23.2 16.2 6.2e-05 22.2 8.1 2.3 2 1 0 2 2 2 1 ABC-2 type transporter DUF4006 PF13179.1 gi|397779209|ref|YP_006543682.1| - 0.14 11.7 0.0 0.14 11.7 0.0 3.1 3 0 0 3 3 3 0 Family of unknown function (DUF4006) EMP70 PF02990.11 gi|397779209|ref|YP_006543682.1| - 0.58 8.5 5.1 0.12 10.7 1.0 1.7 2 0 0 2 2 2 0 Endomembrane protein 70 Tetraspannin PF00335.15 gi|397779209|ref|YP_006543682.1| - 9.2 5.4 15.6 1 8.5 6.7 2.3 3 0 0 3 3 3 0 Tetraspanin family ABC2_membrane_2 PF12679.2 gi|397779210|ref|YP_006543683.1| - 5.3e-45 153.4 11.2 6.3e-45 153.1 7.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|397779210|ref|YP_006543683.1| - 1.5e-17 63.5 8.1 6.8e-17 61.4 5.6 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|397779210|ref|YP_006543683.1| - 6e-08 32.0 16.9 6e-08 32.0 11.7 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|397779210|ref|YP_006543683.1| - 1.6e-06 27.5 6.6 1.6e-06 27.5 4.6 2.0 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|397779210|ref|YP_006543683.1| - 0.00011 21.4 13.8 0.0004 19.6 7.4 2.3 2 1 0 2 2 2 1 ABC-2 type transporter DUF4006 PF13179.1 gi|397779210|ref|YP_006543683.1| - 1.5 8.3 0.0 1.5 8.3 0.0 3.6 4 0 0 4 4 4 0 Family of unknown function (DUF4006) MarR PF01047.17 gi|397779211|ref|YP_006543684.1| - 6.1e-10 38.6 0.0 1.1e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|397779211|ref|YP_006543684.1| - 3.6e-09 36.1 0.1 1.7e-08 34.0 0.0 2.1 2 1 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|397779211|ref|YP_006543684.1| - 1.8e-07 31.3 0.1 5e-07 29.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|397779211|ref|YP_006543684.1| - 2.4e-05 24.1 0.0 4.2e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|397779211|ref|YP_006543684.1| - 0.026 13.9 0.1 0.23 10.8 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.1 gi|397779211|ref|YP_006543684.1| - 0.039 13.1 0.1 0.12 11.5 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.5 gi|397779211|ref|YP_006543684.1| - 0.059 12.9 0.0 0.22 11.1 0.0 2.0 1 1 1 2 2 2 0 IclR helix-turn-helix domain KIP1 PF07765.7 gi|397779211|ref|YP_006543684.1| - 0.06 13.1 0.1 0.14 12.0 0.0 1.6 2 0 0 2 2 2 0 KIP1-like protein UPF0122 PF04297.9 gi|397779211|ref|YP_006543684.1| - 0.063 13.3 0.5 0.64 10.0 0.0 2.2 2 1 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like TrmB PF01978.14 gi|397779211|ref|YP_006543684.1| - 0.11 12.1 0.0 0.42 10.3 0.0 2.0 1 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB RuvB_C PF05491.8 gi|397779211|ref|YP_006543684.1| - 0.13 11.9 0.2 12 5.6 0.1 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus Lon_C PF05362.8 gi|397779212|ref|YP_006543685.1| - 1.8e-86 288.7 0.2 3.9e-86 287.5 0.1 1.6 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.24 gi|397779212|ref|YP_006543685.1| - 4.5e-22 78.6 0.0 1.7e-21 76.7 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) LON PF02190.11 gi|397779212|ref|YP_006543685.1| - 3.8e-12 46.3 0.0 7.8e-12 45.3 0.0 1.6 1 0 0 1 1 1 1 ATP-dependent protease La (LON) domain ChlI PF13541.1 gi|397779212|ref|YP_006543685.1| - 1e-10 41.1 0.0 2.1e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|397779212|ref|YP_006543685.1| - 3.2e-09 36.6 0.0 8.9e-09 35.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|397779212|ref|YP_006543685.1| - 5e-06 26.6 0.0 1.7e-05 24.9 0.0 1.9 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|397779212|ref|YP_006543685.1| - 5.1e-05 24.0 0.4 0.00024 21.8 0.1 2.5 3 1 0 3 3 1 1 AAA domain RuvB_N PF05496.7 gi|397779212|ref|YP_006543685.1| - 0.00013 21.0 0.1 0.00047 19.2 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Zeta_toxin PF06414.7 gi|397779212|ref|YP_006543685.1| - 0.00016 20.8 0.4 0.00037 19.6 0.1 1.7 2 0 0 2 2 2 1 Zeta toxin TIP49 PF06068.8 gi|397779212|ref|YP_006543685.1| - 0.00018 20.3 0.4 0.0037 16.0 0.1 2.2 2 0 0 2 2 2 1 TIP49 C-terminus AAA_22 PF13401.1 gi|397779212|ref|YP_006543685.1| - 0.00025 21.2 0.0 0.0027 17.8 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_PrkA PF08298.6 gi|397779212|ref|YP_006543685.1| - 0.00037 19.2 0.0 0.00087 18.0 0.0 1.5 1 0 0 1 1 1 1 PrkA AAA domain IstB_IS21 PF01695.12 gi|397779212|ref|YP_006543685.1| - 0.00073 19.0 0.0 0.0016 17.8 0.0 1.5 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|397779212|ref|YP_006543685.1| - 0.00087 18.9 0.1 0.0025 17.5 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_2 PF07724.9 gi|397779212|ref|YP_006543685.1| - 0.00092 19.1 0.0 0.0023 17.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|397779212|ref|YP_006543685.1| - 0.0011 18.8 0.0 0.0027 17.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain Birna_VP4 PF01768.11 gi|397779212|ref|YP_006543685.1| - 0.002 17.2 0.2 0.0041 16.2 0.2 1.4 1 0 0 1 1 1 1 Birnavirus VP4 protein UPF0079 PF02367.12 gi|397779212|ref|YP_006543685.1| - 0.0021 17.6 0.6 0.0042 16.7 0.0 1.7 2 0 0 2 2 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_3 PF07726.6 gi|397779212|ref|YP_006543685.1| - 0.0034 17.0 0.0 0.015 14.8 0.0 2.1 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|397779212|ref|YP_006543685.1| - 0.0044 15.7 0.1 0.0074 15.0 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein Viral_helicase1 PF01443.13 gi|397779212|ref|YP_006543685.1| - 0.011 15.2 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.1 gi|397779212|ref|YP_006543685.1| - 0.013 15.3 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|397779212|ref|YP_006543685.1| - 0.017 15.4 1.3 0.035 14.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.8 gi|397779212|ref|YP_006543685.1| - 0.019 13.9 0.0 0.046 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|397779212|ref|YP_006543685.1| - 0.025 14.0 0.8 0.045 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|397779212|ref|YP_006543685.1| - 0.035 13.7 0.3 0.08 12.5 0.2 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|397779212|ref|YP_006543685.1| - 0.056 13.1 0.3 0.39 10.4 0.0 2.6 1 1 2 3 3 3 0 NTPase NACHT PF05729.7 gi|397779212|ref|YP_006543685.1| - 0.11 12.1 0.1 0.37 10.4 0.0 1.9 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|397779212|ref|YP_006543685.1| - 0.19 11.9 0.0 0.37 10.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Pep_M12B_propep PF01562.14 gi|397779213|ref|YP_006543686.1| - 3e-06 27.0 0.0 3.9e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Reprolysin family propeptide BBS2_N PF14781.1 gi|397779213|ref|YP_006543686.1| - 0.0091 15.6 0.9 0.023 14.3 0.6 1.7 2 1 1 3 3 3 1 Ciliary BBSome complex subunit 2, N-terminal Virul_fac_BrkB PF03631.10 gi|397779214|ref|YP_006543687.1| - 0.025 13.9 0.4 0.025 13.9 0.3 1.2 1 0 0 1 1 1 0 Virulence factor BrkB DUF359 PF04019.7 gi|397779214|ref|YP_006543687.1| - 0.12 11.7 0.1 0.17 11.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF359) DUF2970 PF11174.3 gi|397779214|ref|YP_006543687.1| - 0.21 11.1 6.1 0.099 12.2 1.9 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2970) DUF1628 PF07790.6 gi|397779214|ref|YP_006543687.1| - 1.9 9.2 6.8 0.72 10.6 3.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) Pur_DNA_glyco PF02245.11 gi|397779215|ref|YP_006543688.1| - 0.026 13.6 0.1 0.043 12.9 0.1 1.3 1 0 0 1 1 1 0 Methylpurine-DNA glycosylase (MPG) HTH_3 PF01381.17 gi|397779217|ref|YP_006543689.1| - 4.2e-10 39.3 0.0 9.2e-10 38.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|397779217|ref|YP_006543689.1| - 3.3e-07 30.2 0.0 2.7e-06 27.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|397779217|ref|YP_006543689.1| - 4.4e-06 26.7 0.0 8.8e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.1 gi|397779217|ref|YP_006543689.1| - 9.7e-06 25.6 0.0 1.7e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|397779217|ref|YP_006543689.1| - 0.0032 17.0 0.1 0.011 15.3 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_17 PF12728.2 gi|397779217|ref|YP_006543689.1| - 0.0064 16.7 0.9 0.024 14.8 0.2 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|397779217|ref|YP_006543689.1| - 0.015 15.0 0.0 0.049 13.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|397779217|ref|YP_006543689.1| - 0.022 14.5 0.1 0.23 11.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_psq PF05225.11 gi|397779217|ref|YP_006543689.1| - 0.028 13.9 2.4 0.1 12.1 0.0 2.9 4 0 0 4 4 4 0 helix-turn-helix, Psq domain TetR_N PF00440.18 gi|397779217|ref|YP_006543689.1| - 0.043 13.4 0.0 0.12 11.9 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Rnk_N PF14760.1 gi|397779217|ref|YP_006543689.1| - 0.38 10.8 2.6 0.96 9.5 0.3 2.4 2 0 0 2 2 2 0 Rnk N-terminus ABC_tran PF00005.22 gi|397779216|ref|YP_006543690.1| - 2.7e-13 50.4 0.0 4e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397779216|ref|YP_006543690.1| - 2.6e-07 30.9 0.0 0.0037 17.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|397779216|ref|YP_006543690.1| - 0.00096 18.6 0.5 0.02 14.4 0.1 2.9 3 1 0 3 3 3 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|397779216|ref|YP_006543690.1| - 0.0023 17.1 0.2 0.013 14.7 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.16 gi|397779216|ref|YP_006543690.1| - 0.0095 15.1 0.0 0.58 9.2 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|397779216|ref|YP_006543690.1| - 0.012 14.9 0.1 0.038 13.4 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|397779216|ref|YP_006543690.1| - 0.018 15.0 0.0 0.035 14.0 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|397779216|ref|YP_006543690.1| - 0.037 14.1 0.1 0.18 11.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|397779216|ref|YP_006543690.1| - 0.057 12.5 0.0 0.088 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|397779216|ref|YP_006543690.1| - 0.061 12.2 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|397779216|ref|YP_006543690.1| - 0.063 13.2 0.0 0.15 12.0 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|397779216|ref|YP_006543690.1| - 0.072 12.5 0.1 0.32 10.3 0.0 1.8 1 1 0 2 2 2 0 AAA-like domain IIGP PF05049.8 gi|397779216|ref|YP_006543690.1| - 0.09 11.5 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) cobW PF02492.14 gi|397779218|ref|YP_006543691.1| - 6.7e-18 64.7 0.0 8.5e-18 64.4 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|397779218|ref|YP_006543691.1| - 0.00028 20.0 0.0 0.00046 19.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.1 gi|397779218|ref|YP_006543691.1| - 0.00032 20.5 0.0 0.00052 19.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|397779218|ref|YP_006543691.1| - 0.00036 20.2 0.0 0.0011 18.7 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|397779218|ref|YP_006543691.1| - 0.0013 18.7 0.0 0.0043 17.0 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain ArgK PF03308.11 gi|397779218|ref|YP_006543691.1| - 0.0023 16.7 0.0 0.32 9.7 0.0 2.2 2 0 0 2 2 2 2 ArgK protein KTI12 PF08433.5 gi|397779218|ref|YP_006543691.1| - 0.0032 16.7 0.0 0.0044 16.2 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 PduV-EutP PF10662.4 gi|397779218|ref|YP_006543691.1| - 0.026 14.0 0.0 0.62 9.5 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|397779218|ref|YP_006543691.1| - 0.058 13.3 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|397779218|ref|YP_006543691.1| - 0.1 11.4 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Arch_ATPase PF01637.13 gi|397779218|ref|YP_006543691.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|397779218|ref|YP_006543691.1| - 0.14 11.8 0.0 0.37 10.4 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IF3_N PF05198.11 gi|397779218|ref|YP_006543691.1| - 0.15 12.0 0.0 0.38 10.7 0.0 1.6 1 0 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain FeS PF04060.8 gi|397779219|ref|YP_006543692.1| - 4.7e-06 26.0 0.9 8.7e-06 25.2 0.7 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster DUF39 PF01837.11 gi|397779220|ref|YP_006543693.1| - 9.3e-108 359.8 0.0 1.1e-107 359.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4 PF00037.22 gi|397779220|ref|YP_006543693.1| - 2.7e-07 29.9 12.0 2.5e-05 23.6 0.8 3.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397779220|ref|YP_006543693.1| - 6.9e-07 28.8 11.8 0.00033 20.3 1.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397779220|ref|YP_006543693.1| - 2.8e-06 27.0 21.7 0.0003 20.5 1.0 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397779220|ref|YP_006543693.1| - 4.2e-06 26.3 13.7 0.00028 20.6 2.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|397779220|ref|YP_006543693.1| - 2.1e-05 24.2 3.5 0.0034 17.1 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397779220|ref|YP_006543693.1| - 2.5e-05 24.5 14.1 0.0017 18.7 10.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397779220|ref|YP_006543693.1| - 0.001 19.2 10.1 0.0024 18.1 7.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397779220|ref|YP_006543693.1| - 0.0024 18.5 9.0 0.16 12.7 0.7 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_11 PF13247.1 gi|397779220|ref|YP_006543693.1| - 0.0056 16.5 3.5 0.011 15.6 2.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397779220|ref|YP_006543693.1| - 0.021 15.4 0.4 0.021 15.4 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|397779220|ref|YP_006543693.1| - 0.1 13.0 14.2 0.68 10.4 2.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|397779220|ref|YP_006543693.1| - 0.15 12.7 17.5 1.1 10.0 4.0 3.4 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397779220|ref|YP_006543693.1| - 0.61 10.1 12.7 0.48 10.4 1.9 2.0 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397779220|ref|YP_006543693.1| - 1.9 8.8 12.0 0.93 9.8 2.0 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain PALP PF00291.20 gi|397779221|ref|YP_006543694.1| - 2.8e-17 62.8 1.6 4.1e-17 62.3 1.1 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.5 gi|397779221|ref|YP_006543694.1| - 0.026 14.5 0.1 0.064 13.2 0.1 1.6 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal zf-C2H2 PF00096.21 gi|397779221|ref|YP_006543694.1| - 0.041 14.2 1.9 0.093 13.1 1.3 1.7 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-C2HC_2 PF13913.1 gi|397779221|ref|YP_006543694.1| - 0.077 12.6 1.2 0.18 11.5 0.8 1.6 1 0 0 1 1 1 0 zinc-finger of a C2HC-type TPP_enzyme_C PF02775.16 gi|397779222|ref|YP_006543695.1| - 1.7e-12 47.1 0.0 4.5e-12 45.7 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|397779222|ref|YP_006543695.1| - 5.6e-10 38.9 0.1 1.7e-09 37.4 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FtsX PF02687.16 gi|397779223|ref|YP_006543696.1| - 0.028 14.1 0.0 0.04 13.6 0.0 1.3 1 1 0 1 1 1 0 FtsX-like permease family DUF4006 PF13179.1 gi|397779223|ref|YP_006543696.1| - 0.058 12.9 0.1 0.058 12.9 0.1 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF4006) DUF2062 PF09835.4 gi|397779223|ref|YP_006543696.1| - 0.098 12.2 0.0 0.1 12.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2062) BatA PF07584.6 gi|397779223|ref|YP_006543696.1| - 0.29 11.3 1.2 0.96 9.6 0.0 2.0 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal HTH_24 PF13412.1 gi|397779225|ref|YP_006543698.1| - 7.7e-14 50.8 0.0 1e-05 24.8 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|397779225|ref|YP_006543698.1| - 3e-07 29.9 0.0 1.3e-05 24.7 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|397779225|ref|YP_006543698.1| - 8.6e-06 25.4 0.0 0.12 12.1 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR PF01047.17 gi|397779225|ref|YP_006543698.1| - 9.2e-06 25.2 0.0 0.0054 16.4 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.15 gi|397779225|ref|YP_006543698.1| - 0.00032 20.2 0.0 0.0084 15.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family RPA_C PF08784.6 gi|397779225|ref|YP_006543698.1| - 0.0013 19.0 0.0 0.53 10.7 0.0 2.2 2 0 0 2 2 2 2 Replication protein A C terminal TrmB PF01978.14 gi|397779225|ref|YP_006543698.1| - 0.023 14.4 0.0 0.31 10.7 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|397779225|ref|YP_006543698.1| - 0.082 13.0 0.0 0.3 11.1 0.0 2.0 2 1 0 2 2 2 0 Penicillinase repressor HTH_27 PF13463.1 gi|397779225|ref|YP_006543698.1| - 0.15 12.3 0.0 0.54 10.6 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF3753 PF12575.3 gi|397779227|ref|YP_006543700.1| - 0.063 13.0 0.5 0.11 12.3 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3753) Tmemb_9 PF05434.6 gi|397779227|ref|YP_006543700.1| - 0.079 12.7 0.0 0.099 12.3 0.0 1.2 1 0 0 1 1 1 0 TMEM9 DUF3040 PF11239.3 gi|397779228|ref|YP_006543701.1| - 0.2 11.7 0.7 0.54 10.3 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) SecE PF00584.15 gi|397779230|ref|YP_006543703.1| - 0.74 9.4 3.5 0.67 9.5 0.3 2.2 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex Mem_trans PF03547.13 gi|397779231|ref|YP_006543704.1| - 1.1e-32 112.7 29.9 7.5e-19 67.2 6.7 2.0 1 1 1 2 2 2 2 Membrane transport protein NUDIX PF00293.23 gi|397779232|ref|YP_006543705.1| - 1.3e-19 70.2 0.0 1.7e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|397779232|ref|YP_006543705.1| - 0.053 12.9 0.0 0.19 11.1 0.0 1.7 1 1 0 1 1 1 0 NUDIX domain FTP PF07504.8 gi|397779233|ref|YP_006543706.1| - 0.019 14.4 0.1 0.037 13.5 0.1 1.5 1 0 0 1 1 1 0 Fungalysin/Thermolysin Propeptide Motif Pep_M12B_propep PF01562.14 gi|397779234|ref|YP_006543707.1| - 9.9e-28 96.5 0.0 1.2e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 Reprolysin family propeptide Peptidase_M28 PF04389.12 gi|397779235|ref|YP_006543708.1| - 2.3e-31 108.9 0.0 3.8e-31 108.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.23 gi|397779235|ref|YP_006543708.1| - 2.5e-08 33.6 3.0 4.3e-08 32.8 2.1 1.5 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|397779235|ref|YP_006543708.1| - 1.8e-05 23.6 0.1 0.00015 20.6 0.0 2.1 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase Nicastrin PF05450.10 gi|397779235|ref|YP_006543708.1| - 0.00056 19.2 0.0 0.00082 18.6 0.0 1.2 1 0 0 1 1 1 1 Nicastrin NTP_transf_2 PF01909.18 gi|397779238|ref|YP_006543711.1| - 1.6e-06 28.3 0.1 3.2e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_41 PF14502.1 gi|397779238|ref|YP_006543711.1| - 6.1e-05 22.5 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|397779238|ref|YP_006543711.1| - 0.035 13.8 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|397779238|ref|YP_006543711.1| - 0.2 11.3 1.5 0.31 10.7 0.1 1.9 2 0 0 2 2 2 0 MarR family ADP_ribosyl_GH PF03747.9 gi|397779240|ref|YP_006543713.1| - 3.1e-49 168.2 5.1 4.3e-49 167.8 3.5 1.2 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Semialdhyde_dh PF01118.19 gi|397779241|ref|YP_006543714.1| - 4.6e-31 107.6 0.0 7.5e-31 106.9 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|397779241|ref|YP_006543714.1| - 5.5e-17 62.2 0.0 8.1e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain RmlD_sub_bind PF04321.12 gi|397779241|ref|YP_006543714.1| - 0.00038 19.4 0.0 0.00091 18.1 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|397779241|ref|YP_006543714.1| - 0.0055 16.7 0.5 0.0097 15.9 0.1 1.7 2 0 0 2 2 2 1 NADH(P)-binding F420_oxidored PF03807.12 gi|397779241|ref|YP_006543714.1| - 0.0056 17.0 0.1 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|397779241|ref|YP_006543714.1| - 0.016 15.6 0.0 0.1 13.1 0.0 2.1 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.1 gi|397779241|ref|YP_006543714.1| - 0.043 13.9 0.0 0.09 12.9 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain DapB_N PF01113.15 gi|397779241|ref|YP_006543714.1| - 0.051 13.5 0.0 0.089 12.7 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus CBS PF00571.23 gi|397779242|ref|YP_006543715.1| - 5.6e-34 115.6 7.4 3.3e-17 61.9 0.4 2.1 2 0 0 2 2 2 2 CBS domain ArgJ PF01960.13 gi|397779243|ref|YP_006543716.1| - 1.9e-135 451.2 3.6 2.2e-135 451.0 2.5 1.0 1 0 0 1 1 1 1 ArgJ family AA_kinase PF00696.23 gi|397779244|ref|YP_006543717.1| - 1.1e-43 149.5 3.3 1.3e-43 149.3 2.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family CM_2 PF01817.16 gi|397779245|ref|YP_006543718.1| - 2.2e-17 62.8 6.4 2.5e-17 62.7 4.4 1.0 1 0 0 1 1 1 1 Chorismate mutase type II DUF1465 PF07323.7 gi|397779245|ref|YP_006543718.1| - 0.0029 17.1 0.4 0.004 16.7 0.2 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1465) Osmo_CC PF08946.5 gi|397779245|ref|YP_006543718.1| - 0.0086 16.0 0.4 0.019 15.0 0.3 1.6 1 0 0 1 1 1 1 Osmosensory transporter coiled coil DivIC PF04977.10 gi|397779245|ref|YP_006543718.1| - 0.012 15.0 0.3 0.017 14.6 0.2 1.3 1 0 0 1 1 1 0 Septum formation initiator Rab5-bind PF09311.6 gi|397779245|ref|YP_006543718.1| - 0.029 14.2 0.4 0.062 13.1 0.1 1.7 2 0 0 2 2 2 0 Rabaptin-like protein bZIP_2 PF07716.10 gi|397779245|ref|YP_006543718.1| - 0.086 12.6 0.4 0.18 11.6 0.3 1.5 1 0 0 1 1 1 0 Basic region leucine zipper Peptidase_M50 PF02163.17 gi|397779246|ref|YP_006543719.1| - 4.1e-11 42.2 14.6 5.2e-10 38.6 10.1 2.4 1 1 0 1 1 1 1 Peptidase family M50 DUF1673 PF07895.6 gi|397779246|ref|YP_006543719.1| - 0.0046 16.5 2.5 0.0051 16.3 0.8 1.7 1 1 1 2 2 2 2 Protein of unknown function (DUF1673) PAS_8 PF13188.1 gi|397779246|ref|YP_006543719.1| - 0.053 13.4 0.1 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 PAS domain PAS_9 PF13426.1 gi|397779247|ref|YP_006543720.1| - 2.9e-103 339.2 0.0 4.4e-17 62.3 0.0 8.4 8 0 0 8 8 8 8 PAS domain PAS_4 PF08448.5 gi|397779247|ref|YP_006543720.1| - 7.7e-76 251.2 13.0 1.1e-17 64.1 0.0 8.6 8 0 0 8 8 8 7 PAS fold PAS PF00989.19 gi|397779247|ref|YP_006543720.1| - 5.7e-71 235.4 0.0 7.2e-14 51.5 0.0 8.4 8 0 0 8 8 8 8 PAS fold PAS_3 PF08447.6 gi|397779247|ref|YP_006543720.1| - 2.3e-44 149.4 0.0 3.3e-20 71.9 0.0 8.7 8 0 0 8 8 8 5 PAS fold PAS_8 PF13188.1 gi|397779247|ref|YP_006543720.1| - 4.2e-41 137.4 6.5 4.6e-07 29.4 0.0 8.5 8 0 0 8 8 8 7 PAS domain HATPase_c PF02518.21 gi|397779247|ref|YP_006543720.1| - 2.1e-23 82.1 0.0 5.3e-23 80.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|397779247|ref|YP_006543720.1| - 5.6e-15 56.1 1.0 7.9e-14 52.3 0.1 3.2 3 0 0 3 3 3 1 GAF domain PAS_7 PF12860.2 gi|397779247|ref|YP_006543720.1| - 6.7e-15 55.1 2.2 0.21 11.5 0.0 9.2 8 4 0 8 8 8 4 PAS fold GAF_3 PF13492.1 gi|397779247|ref|YP_006543720.1| - 1.2e-12 48.0 0.0 5.9e-12 45.8 0.0 2.3 2 0 0 2 2 2 1 GAF domain PAS_11 PF14598.1 gi|397779247|ref|YP_006543720.1| - 2.1e-07 30.8 0.0 0.033 14.1 0.0 4.1 4 0 0 4 4 4 2 PAS domain PAS_10 PF13596.1 gi|397779247|ref|YP_006543720.1| - 0.0066 16.6 0.0 7.2 6.9 0.0 4.5 5 0 0 5 5 5 1 PAS domain HATPase_c_3 PF13589.1 gi|397779247|ref|YP_006543720.1| - 0.011 15.3 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|397779247|ref|YP_006543720.1| - 0.018 14.8 0.0 0.056 13.2 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|397779247|ref|YP_006543720.1| - 0.031 13.9 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 GHKL domain Pab87_oct PF13969.1 gi|397779247|ref|YP_006543720.1| - 0.048 13.7 0.0 0.22 11.6 0.0 2.1 2 0 0 2 2 2 0 Pab87 octamerisation domain FMN_red PF03358.10 gi|397779248|ref|YP_006543721.1| - 6.1e-22 77.7 0.0 7.6e-22 77.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|397779248|ref|YP_006543721.1| - 2e-14 53.6 0.0 2.4e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|397779249|ref|YP_006543722.1| - 5e-16 58.5 0.0 7.5e-16 57.9 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|397779249|ref|YP_006543722.1| - 9.5e-09 35.0 0.0 1.3e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold BCCT PF02028.12 gi|397779250|ref|YP_006543723.1| - 1.3e-188 627.1 48.1 1.5e-188 627.0 33.3 1.0 1 0 0 1 1 1 1 BCCT family transporter Usp PF00582.21 gi|397779251|ref|YP_006543724.1| - 1.8e-25 89.7 0.6 1.4e-12 47.9 0.0 2.1 2 0 0 2 2 2 2 Universal stress protein family AhpC-TSA PF00578.16 gi|590000584|ref|YP_006543725.2| - 2.9e-36 123.8 0.0 3.8e-36 123.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|590000584|ref|YP_006543725.2| - 2.3e-19 68.7 0.5 3.7e-19 68.0 0.4 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|590000584|ref|YP_006543725.2| - 3.2e-18 65.6 0.0 4.3e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|590000584|ref|YP_006543725.2| - 0.025 13.9 0.0 0.033 13.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.1 gi|590000584|ref|YP_006543725.2| - 0.052 13.4 0.0 0.062 13.2 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme CMD PF02627.15 gi|590000585|ref|YP_009001385.1| - 7.9e-14 51.2 0.3 9.6e-14 50.9 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DNA_RNApol_7kD PF03604.8 gi|397779254|ref|YP_006543727.1| - 0.00035 19.9 4.7 0.00035 19.9 3.3 1.5 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DUF1451 PF07295.6 gi|397779254|ref|YP_006543727.1| - 0.0047 16.7 1.4 0.0055 16.4 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1451) Zn-ribbon_8 PF09723.5 gi|397779254|ref|YP_006543727.1| - 0.016 15.1 3.6 0.025 14.5 2.5 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|397779254|ref|YP_006543727.1| - 0.034 14.1 2.4 0.034 14.1 1.6 1.9 2 0 0 2 2 2 0 zinc-finger Fer4_18 PF13746.1 gi|397779254|ref|YP_006543727.1| - 0.05 14.0 3.3 3.1 8.3 0.6 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF448 PF04296.8 gi|397779254|ref|YP_006543727.1| - 0.088 12.4 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF448) HypA PF01155.14 gi|397779254|ref|YP_006543727.1| - 0.094 12.4 2.0 0.11 12.1 1.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|397779254|ref|YP_006543727.1| - 2.5 7.9 6.7 15 5.5 1.5 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|397779254|ref|YP_006543727.1| - 5.1 6.5 7.6 0.34 10.2 0.2 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding FMN_red PF03358.10 gi|397779255|ref|YP_006543728.1| - 8.3e-20 70.8 0.0 1.1e-19 70.5 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|397779255|ref|YP_006543728.1| - 5.5e-13 48.8 0.0 7.2e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Stanniocalcin PF03298.8 gi|397779255|ref|YP_006543728.1| - 0.03 13.3 0.0 0.044 12.7 0.0 1.2 1 0 0 1 1 1 0 Stanniocalcin family Cation_efflux PF01545.16 gi|397779256|ref|YP_006543729.1| - 1.6e-66 224.2 1.0 1.8e-66 224.1 0.7 1.0 1 0 0 1 1 1 1 Cation efflux family Oxidored_q2 PF00420.19 gi|397779256|ref|YP_006543729.1| - 6.4 6.4 7.8 3.3 7.3 1.9 2.7 2 1 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Rubrerythrin PF02915.12 gi|397779257|ref|YP_006543730.1| - 8.6e-19 68.2 11.7 2.4e-17 63.5 8.1 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|397779257|ref|YP_006543730.1| - 9e-05 22.2 3.3 0.00012 21.8 2.3 1.1 1 0 0 1 1 1 1 Ferritin-like domain RecR PF02132.10 gi|397779257|ref|YP_006543730.1| - 0.01 15.2 0.2 0.028 13.8 0.2 1.7 1 1 0 1 1 1 0 RecR protein zf-P11 PF03854.9 gi|397779257|ref|YP_006543730.1| - 0.062 12.7 0.1 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 P-11 zinc finger zf-FPG_IleRS PF06827.9 gi|397779257|ref|YP_006543730.1| - 0.22 11.2 1.9 16 5.2 0.2 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-Mss51 PF13824.1 gi|397779257|ref|YP_006543730.1| - 0.25 11.2 1.0 0.53 10.1 0.7 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.7 gi|397779257|ref|YP_006543730.1| - 0.36 10.1 4.3 4.7 6.6 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.15 gi|397779257|ref|YP_006543730.1| - 0.98 9.3 4.1 26 4.8 0.2 2.4 1 1 1 2 2 2 0 Rubredoxin Lar_restr_allev PF14354.1 gi|397779257|ref|YP_006543730.1| - 1.5 9.2 4.5 15 5.9 0.3 2.7 1 1 1 2 2 2 0 Restriction alleviation protein Lar Desulfoferrod_N PF06397.7 gi|397779257|ref|YP_006543730.1| - 1.6 8.1 5.5 0.59 9.5 0.3 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.1 gi|397779257|ref|YP_006543730.1| - 1.6 7.9 4.6 9.6 5.5 3.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Pyr_redox_2 PF07992.9 gi|397779258|ref|YP_006543731.1| - 2.6e-26 92.7 0.0 6.7e-26 91.4 0.0 1.8 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|397779258|ref|YP_006543731.1| - 1.3e-18 67.8 0.1 2.1e-13 50.8 0.0 2.8 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.19 gi|397779258|ref|YP_006543731.1| - 4.3e-16 58.6 0.1 2.5e-15 56.2 0.1 2.1 2 0 0 2 2 2 1 Glutaredoxin Pyr_redox PF00070.22 gi|397779258|ref|YP_006543731.1| - 1.3e-09 38.3 3.9 1.3e-07 31.8 0.3 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|397779258|ref|YP_006543731.1| - 3.1e-09 36.2 9.4 1.6e-06 27.2 0.0 4.2 4 0 0 4 4 4 1 FAD binding domain GIDA PF01134.17 gi|397779258|ref|YP_006543731.1| - 5.4e-09 35.3 10.7 0.00051 19.0 0.4 4.0 4 0 0 4 4 4 2 Glucose inhibited division protein A DAO PF01266.19 gi|397779258|ref|YP_006543731.1| - 4.3e-08 32.4 15.8 0.00028 19.9 0.7 4.4 3 2 2 5 5 5 3 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|397779258|ref|YP_006543731.1| - 5.4e-08 32.3 9.9 1.7e-06 27.4 0.0 3.2 2 1 1 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|397779258|ref|YP_006543731.1| - 6.8e-08 31.8 4.5 7e-07 28.5 0.3 3.2 2 1 1 3 3 3 1 Thi4 family Lycopene_cycl PF05834.7 gi|397779258|ref|YP_006543731.1| - 2.2e-07 30.1 2.4 0.0017 17.3 0.4 3.1 2 1 1 3 3 3 2 Lycopene cyclase protein HI0933_like PF03486.9 gi|397779258|ref|YP_006543731.1| - 2e-06 26.5 8.8 0.0013 17.2 0.3 4.1 4 1 1 5 5 5 2 HI0933-like protein GST_N_3 PF13417.1 gi|397779258|ref|YP_006543731.1| - 1.8e-05 24.8 0.0 3.9e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain K_oxygenase PF13434.1 gi|397779258|ref|YP_006543731.1| - 2.4e-05 23.4 0.1 0.36 9.7 0.0 4.0 3 1 1 4 4 4 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|397779258|ref|YP_006543731.1| - 4.6e-05 23.2 1.5 0.063 13.0 0.0 3.1 3 0 0 3 3 3 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|397779258|ref|YP_006543731.1| - 0.0018 18.2 0.1 0.0018 18.2 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|397779258|ref|YP_006543731.1| - 0.0027 16.8 5.7 0.015 14.3 0.1 3.0 2 1 1 3 3 3 1 FAD binding domain GST_N_2 PF13409.1 gi|397779258|ref|YP_006543731.1| - 0.0036 17.2 0.0 0.0072 16.3 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|397779258|ref|YP_006543731.1| - 0.0072 16.0 0.7 2.7 7.6 0.0 2.5 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Trp_halogenase PF04820.9 gi|397779258|ref|YP_006543731.1| - 0.0079 14.8 4.4 0.019 13.6 0.3 2.2 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_7 PF13241.1 gi|397779258|ref|YP_006543731.1| - 0.0079 16.4 0.4 3.7 7.8 0.1 2.5 2 1 0 2 2 2 1 Putative NAD(P)-binding ArsC PF03960.10 gi|397779258|ref|YP_006543731.1| - 0.012 15.7 0.0 0.05 13.6 0.0 2.1 2 1 0 2 2 2 0 ArsC family DUF836 PF05768.9 gi|397779258|ref|YP_006543731.1| - 0.11 12.7 0.0 0.25 11.6 0.0 1.6 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Shikimate_DH PF01488.15 gi|397779258|ref|YP_006543731.1| - 3.4 7.7 6.6 12 6.0 0.1 3.2 5 0 0 5 5 3 0 Shikimate / quinate 5-dehydrogenase DUF217 PF02697.9 gi|397779261|ref|YP_006543734.1| - 3.7e-07 30.3 1.2 4.4e-07 30.0 0.9 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 MatP PF06303.7 gi|397779261|ref|YP_006543734.1| - 0.0083 16.0 0.2 0.0092 15.9 0.1 1.1 1 0 0 1 1 1 1 Organiser of macrodomain of Terminus of chromosome RepB-RCR_reg PF10723.4 gi|397779261|ref|YP_006543734.1| - 0.017 14.8 0.4 0.038 13.7 0.1 1.6 1 1 1 2 2 2 0 Replication regulatory protein RepB DUF2205 PF10224.4 gi|397779261|ref|YP_006543734.1| - 0.051 13.1 0.4 0.079 12.5 0.3 1.3 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) Paramyx_P_V_C PF03210.8 gi|397779261|ref|YP_006543734.1| - 0.11 12.3 0.1 0.12 12.2 0.1 1.1 1 0 0 1 1 1 0 Paramyxovirus P/V phosphoprotein C-terminal DUF367 PF04034.8 gi|397779261|ref|YP_006543734.1| - 0.11 12.0 0.1 0.13 11.9 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF367) DUF1387 PF07139.6 gi|397779261|ref|YP_006543734.1| - 0.17 11.4 1.1 0.17 11.4 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1387) CDP-OH_P_transf PF01066.16 gi|397779262|ref|YP_006543735.1| - 3.5e-14 52.9 10.7 7e-14 51.9 7.4 1.6 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase nec1 PF10379.4 gi|397779262|ref|YP_006543735.1| - 0.11 11.7 0.2 0.17 11.1 0.1 1.3 1 0 0 1 1 1 0 Virulence protein nec1 DUF86 PF01934.12 gi|397779264|ref|YP_006543737.1| - 2.4e-22 78.8 0.0 2.7e-22 78.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF4145 PF13643.1 gi|397779264|ref|YP_006543737.1| - 0.015 15.1 0.0 0.025 14.4 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) NTP_transf_2 PF01909.18 gi|397779265|ref|YP_006543738.1| - 1.2e-11 44.7 0.5 1.6e-11 44.3 0.3 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|397779266|ref|YP_006543739.1| - 2.1e-25 88.6 0.0 2.5e-25 88.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 CCG PF02754.11 gi|397779268|ref|YP_006543741.1| - 4e-33 113.2 8.5 7.1e-16 57.9 0.2 3.8 3 0 0 3 3 3 2 Cysteine-rich domain Fer2_3 PF13085.1 gi|397779268|ref|YP_006543741.1| - 2.6e-26 91.5 0.0 5.8e-26 90.4 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|397779268|ref|YP_006543741.1| - 3.5e-10 39.5 0.7 3e-09 36.5 0.5 2.5 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|397779268|ref|YP_006543741.1| - 4.2e-09 36.3 6.6 4.2e-09 36.3 4.6 3.2 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397779268|ref|YP_006543741.1| - 4.4e-08 33.3 6.1 4.4e-08 33.3 4.2 3.2 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397779268|ref|YP_006543741.1| - 1.7e-05 25.1 25.9 0.00036 20.8 0.5 5.0 4 1 1 5 5 5 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397779268|ref|YP_006543741.1| - 2.1e-05 24.2 22.8 9.6e-05 22.1 9.3 3.8 4 1 2 6 6 6 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397779268|ref|YP_006543741.1| - 3.6e-05 24.0 8.4 3.6e-05 24.0 5.8 3.9 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer2 PF00111.22 gi|397779268|ref|YP_006543741.1| - 0.00036 20.2 1.0 0.00036 20.2 0.7 2.5 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_9 PF13187.1 gi|397779268|ref|YP_006543741.1| - 0.0017 18.6 14.0 0.0017 18.6 9.7 4.3 3 1 1 4 4 4 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397779268|ref|YP_006543741.1| - 0.0094 16.6 0.3 0.0094 16.6 0.2 4.0 5 0 0 5 5 4 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|397779268|ref|YP_006543741.1| - 1.4 8.9 36.8 0.031 14.1 5.0 4.9 5 0 0 5 5 5 0 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|397779269|ref|YP_006543742.1| - 2.8e-92 309.7 8.3 3.3e-92 309.4 5.8 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|397779269|ref|YP_006543742.1| - 1.3e-15 57.3 0.0 2.6e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|397779269|ref|YP_006543742.1| - 1.7e-07 31.2 4.2 5e-06 26.5 2.9 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|397779269|ref|YP_006543742.1| - 0.00031 19.3 4.6 0.17 10.3 0.0 2.8 4 0 0 4 4 4 2 HI0933-like protein Thi4 PF01946.12 gi|397779269|ref|YP_006543742.1| - 0.011 14.8 3.2 2.4 7.2 0.3 3.2 3 0 0 3 3 3 0 Thi4 family FAD_oxidored PF12831.2 gi|397779269|ref|YP_006543742.1| - 0.014 14.5 3.8 0.025 13.6 2.6 1.4 1 1 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|397779269|ref|YP_006543742.1| - 0.019 13.8 3.1 0.069 12.0 1.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.16 gi|397779269|ref|YP_006543742.1| - 0.13 11.8 0.2 0.25 10.9 0.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.19 gi|397779269|ref|YP_006543742.1| - 4.3 6.1 9.7 5.4e+02 -0.8 6.8 2.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase AA_kinase PF00696.23 gi|397779270|ref|YP_006543743.1| - 4.1e-51 173.8 0.2 6.3e-51 173.2 0.1 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.1 gi|397779270|ref|YP_006543743.1| - 8.3e-21 73.2 0.4 7.3e-10 38.2 0.0 2.8 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|397779270|ref|YP_006543743.1| - 4.9e-19 67.4 1.2 2.9e-09 36.2 0.0 3.0 3 0 0 3 3 3 2 ACT domain DUF2007 PF09413.5 gi|397779270|ref|YP_006543743.1| - 0.0033 17.2 0.2 0.98 9.2 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF2007) AIRS_C PF02769.17 gi|397779271|ref|YP_006543744.1| - 2.7e-23 82.6 0.0 4.1e-23 82.0 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|397779271|ref|YP_006543744.1| - 1e-13 51.2 0.5 2.1e-13 50.3 0.3 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF2281 PF10047.4 gi|397779272|ref|YP_006543745.1| - 2.4e-11 43.7 0.0 2.6e-11 43.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2281) zf-ZPR1 PF03367.8 gi|397779274|ref|YP_006543747.1| - 4.9e-42 142.8 0.0 5.7e-42 142.6 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain UPF0547 PF10571.4 gi|397779274|ref|YP_006543747.1| - 0.0095 15.6 1.1 0.019 14.6 0.8 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-HYPF PF07503.7 gi|397779274|ref|YP_006543747.1| - 0.043 13.2 0.6 9.7 5.7 0.0 2.4 2 0 0 2 2 2 0 HypF finger zf-ribbon_3 PF13248.1 gi|397779274|ref|YP_006543747.1| - 0.043 13.0 1.0 0.54 9.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|397779274|ref|YP_006543747.1| - 0.12 12.6 1.2 0.14 12.5 0.1 1.7 2 0 0 2 2 2 0 Restriction alleviation protein Lar DUF552 PF04472.7 gi|397779275|ref|YP_006543748.1| - 9.4e-19 67.1 2.2 1.3e-18 66.6 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) DUF1107 PF06526.7 gi|397779275|ref|YP_006543748.1| - 0.089 12.6 0.0 0.17 11.7 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1107) PUA PF01472.15 gi|397779276|ref|YP_006543749.1| - 4.2e-20 71.2 0.5 6.2e-20 70.7 0.3 1.3 1 0 0 1 1 1 1 PUA domain LSM PF01423.17 gi|397779277|ref|YP_006543750.1| - 2.6e-19 68.5 0.3 3e-19 68.3 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|397779277|ref|YP_006543750.1| - 0.071 13.0 0.0 0.099 12.5 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain DUF552 PF04472.7 gi|397779277|ref|YP_006543750.1| - 0.12 12.2 0.2 2.2 8.2 0.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF552) Ribosomal_L37e PF01907.14 gi|397779278|ref|YP_006543751.1| - 4.5e-27 93.6 11.9 5e-27 93.4 8.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|397779278|ref|YP_006543751.1| - 0.00079 19.1 1.9 0.001 18.8 1.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|397779278|ref|YP_006543751.1| - 0.011 14.9 3.2 0.017 14.2 2.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_6 PF14599.1 gi|397779278|ref|YP_006543751.1| - 0.045 13.5 0.5 0.06 13.1 0.4 1.3 1 0 0 1 1 1 0 Zinc-ribbon zf-piccolo PF05715.8 gi|397779278|ref|YP_006543751.1| - 0.094 12.7 1.3 0.18 11.7 0.9 1.6 1 1 0 1 1 1 0 Piccolo Zn-finger DUF35_N PF12172.3 gi|397779278|ref|YP_006543751.1| - 0.13 12.2 4.0 0.18 11.7 2.8 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) FYVE_2 PF02318.11 gi|397779278|ref|YP_006543751.1| - 0.15 11.9 1.6 0.17 11.7 1.1 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger HypA PF01155.14 gi|397779278|ref|YP_006543751.1| - 0.16 11.6 0.9 0.18 11.4 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Ribosomal_S27 PF01599.14 gi|397779278|ref|YP_006543751.1| - 0.18 11.6 4.3 0.24 11.2 3.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S27a zf-RING_5 PF14634.1 gi|397779278|ref|YP_006543751.1| - 0.19 11.4 4.8 0.26 11.0 3.3 1.2 1 0 0 1 1 1 0 zinc-RING finger domain C1_3 PF07649.7 gi|397779278|ref|YP_006543751.1| - 0.21 11.6 1.4 11 6.1 0.1 2.1 2 0 0 2 2 2 0 C1-like domain Ribosomal_L32p PF01783.18 gi|397779278|ref|YP_006543751.1| - 0.32 11.1 8.7 0.14 12.3 4.1 1.9 1 1 1 2 2 2 0 Ribosomal L32p protein family Auto_anti-p27 PF06677.7 gi|397779278|ref|YP_006543751.1| - 0.39 10.5 3.1 0.79 9.5 2.2 1.6 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-HIT PF04438.11 gi|397779278|ref|YP_006543751.1| - 0.4 10.3 5.0 5.6 6.6 0.3 2.2 2 0 0 2 2 2 0 HIT zinc finger Zn-ribbon_8 PF09723.5 gi|397779278|ref|YP_006543751.1| - 0.48 10.4 3.2 8.4 6.4 0.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-Mss51 PF13824.1 gi|397779278|ref|YP_006543751.1| - 0.61 9.9 3.4 0.46 10.3 0.2 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 MraY_sig1 PF10555.4 gi|397779278|ref|YP_006543751.1| - 1.2 8.5 4.5 0.81 9.1 0.6 2.1 2 0 0 2 2 2 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 zf-C2H2_3 PF13878.1 gi|397779278|ref|YP_006543751.1| - 2.7 7.6 6.8 8.8 5.9 0.8 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Tnp_zf-ribbon_2 PF13842.1 gi|397779278|ref|YP_006543751.1| - 5.1 7.5 7.7 42 4.6 5.0 2.1 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zinc_ribbon_2 PF13240.1 gi|397779278|ref|YP_006543751.1| - 5.7 6.5 6.1 7.6 6.1 0.5 2.2 1 1 1 2 2 2 0 zinc-ribbon domain GATase_7 PF13537.1 gi|397779279|ref|YP_006543752.1| - 1.1e-20 73.5 0.0 2.6e-20 72.3 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|397779279|ref|YP_006543752.1| - 1.6e-19 69.8 0.1 4.8e-15 55.1 0.0 2.9 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|397779279|ref|YP_006543752.1| - 2.9e-19 69.3 0.0 5.3e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|397779279|ref|YP_006543752.1| - 4.8e-13 48.9 0.4 1.1e-12 47.8 0.1 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|397779279|ref|YP_006543752.1| - 1.6e-07 30.3 0.0 2e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Thioredoxin PF00085.15 gi|397779280|ref|YP_006543753.1| - 2.2e-25 88.3 0.0 2.6e-25 88.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|397779280|ref|YP_006543753.1| - 7.2e-07 29.4 0.0 1.5e-05 25.1 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|397779280|ref|YP_006543753.1| - 5e-05 23.3 0.0 0.0005 20.1 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|397779280|ref|YP_006543753.1| - 0.0019 17.7 0.0 0.0037 16.8 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|397779280|ref|YP_006543753.1| - 0.0045 16.5 0.0 0.0057 16.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin DUF953 PF06110.6 gi|397779280|ref|YP_006543753.1| - 0.029 13.8 0.2 0.23 10.9 0.1 2.1 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) HyaE PF07449.6 gi|397779280|ref|YP_006543753.1| - 0.074 12.9 0.0 0.096 12.5 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE AhpC-TSA PF00578.16 gi|397779280|ref|YP_006543753.1| - 0.1 12.3 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA family Thioredoxin_7 PF13899.1 gi|397779280|ref|YP_006543753.1| - 0.13 12.2 0.1 0.23 11.5 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like Pterin_4a PF01329.14 gi|397779281|ref|YP_006543754.1| - 5.6e-25 86.9 0.0 6.3e-25 86.7 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase PAS_8 PF13188.1 gi|397779282|ref|YP_006543755.1| - 1.8e-09 37.0 0.0 5.3e-09 35.6 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|397779282|ref|YP_006543755.1| - 3e-09 36.8 0.1 9e-08 32.1 0.1 2.3 2 0 0 2 2 2 1 PAS fold GAF_3 PF13492.1 gi|397779282|ref|YP_006543755.1| - 8.1e-08 32.4 0.0 2.7e-07 30.7 0.0 1.8 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.1 gi|397779282|ref|YP_006543755.1| - 4.1e-07 30.5 0.0 1.1e-06 29.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|397779282|ref|YP_006543755.1| - 7.6e-07 28.9 0.0 1.6e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|397779282|ref|YP_006543755.1| - 1.3e-05 25.4 0.0 6.3e-05 23.3 0.0 2.0 2 0 0 2 2 2 1 PAS domain GAF PF01590.21 gi|397779282|ref|YP_006543755.1| - 0.00055 20.1 0.0 0.00099 19.2 0.0 1.5 1 0 0 1 1 1 1 GAF domain DUF4118 PF13493.1 gi|397779282|ref|YP_006543755.1| - 0.00097 19.3 8.3 0.0019 18.3 5.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HisKA PF00512.20 gi|397779282|ref|YP_006543755.1| - 0.43 10.5 2.2 1.2 9.2 0.1 2.7 2 1 1 3 3 3 0 His Kinase A (phospho-acceptor) domain FMN_red PF03358.10 gi|397779283|ref|YP_006543756.1| - 9e-24 83.7 0.0 1.1e-23 83.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase DUF362 PF04015.7 gi|397779284|ref|YP_006543757.1| - 4.5e-27 94.8 0.0 2e-26 92.7 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|397779284|ref|YP_006543757.1| - 6e-13 47.8 12.8 2e-07 30.3 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|397779284|ref|YP_006543757.1| - 1.4e-10 41.2 35.7 1.8e-07 31.2 9.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397779284|ref|YP_006543757.1| - 1.8e-10 40.4 24.4 3.7e-08 33.0 9.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397779284|ref|YP_006543757.1| - 3.3e-10 40.1 11.6 6.8e-10 39.1 8.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397779284|ref|YP_006543757.1| - 1.2e-09 37.5 13.1 4.7e-05 23.0 2.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397779284|ref|YP_006543757.1| - 2.8e-09 36.4 12.5 5e-05 22.9 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|397779284|ref|YP_006543757.1| - 1e-07 31.6 9.9 2.5e-07 30.4 6.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397779284|ref|YP_006543757.1| - 1.8e-07 31.7 9.4 0.0018 18.9 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|397779284|ref|YP_006543757.1| - 9.6e-06 25.8 9.2 0.013 15.8 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397779284|ref|YP_006543757.1| - 1.7e-05 24.7 15.8 0.0053 16.9 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397779284|ref|YP_006543757.1| - 1.8e-05 24.6 14.0 7.1e-05 22.7 9.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397779284|ref|YP_006543757.1| - 4e-05 23.9 12.0 0.022 15.1 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|397779284|ref|YP_006543757.1| - 0.0046 16.8 3.6 0.0081 16.0 2.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain DUF2088 PF09861.4 gi|397779284|ref|YP_006543757.1| - 0.012 14.6 0.3 0.022 13.8 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) Fer4_15 PF13459.1 gi|397779284|ref|YP_006543757.1| - 0.14 12.7 12.9 56 4.4 8.9 2.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|397779284|ref|YP_006543757.1| - 0.38 11.4 20.6 0.12 12.9 3.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|397779284|ref|YP_006543757.1| - 6.5 7.2 14.0 2.7e+02 2.0 9.7 2.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain DUF4098 PF13345.1 gi|397779285|ref|YP_006543758.1| - 1.4e-21 76.1 54.8 2.5e-08 33.7 7.1 4.7 2 1 4 6 6 6 5 Domain of unknown function (DUF4098) DUF4097 PF13349.1 gi|397779285|ref|YP_006543758.1| - 0.00016 21.2 0.0 0.0057 16.2 0.0 2.9 3 1 1 4 4 4 1 Domain of unknown function (DUF4097) BON PF04972.12 gi|397779285|ref|YP_006543758.1| - 8.8 6.1 10.9 27 4.6 0.2 4.7 5 0 0 5 5 5 0 BON domain ABC2_membrane PF01061.19 gi|397779286|ref|YP_006543759.1| - 2.8e-29 101.8 28.1 2.8e-29 101.8 19.5 1.9 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|397779286|ref|YP_006543759.1| - 1.4e-13 50.6 32.2 1.4e-13 50.6 22.3 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|397779286|ref|YP_006543759.1| - 0.0012 18.0 27.0 0.0017 17.5 18.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|397779287|ref|YP_006543760.1| - 3e-33 114.9 0.0 4.7e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397779287|ref|YP_006543760.1| - 6.8e-13 49.2 0.0 1e-09 38.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|397779287|ref|YP_006543760.1| - 6.6e-09 36.1 0.0 1.2e-08 35.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|397779287|ref|YP_006543760.1| - 0.00023 20.5 0.0 0.00047 19.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|397779287|ref|YP_006543760.1| - 0.0012 18.7 0.0 0.022 14.6 0.0 2.6 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|397779287|ref|YP_006543760.1| - 0.0019 18.3 0.1 0.0091 16.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|397779287|ref|YP_006543760.1| - 0.0021 17.5 0.3 0.28 10.5 0.0 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|397779287|ref|YP_006543760.1| - 0.0022 18.3 0.0 0.0031 17.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|397779287|ref|YP_006543760.1| - 0.0044 16.2 0.0 0.0075 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|397779287|ref|YP_006543760.1| - 0.0058 15.8 0.0 0.03 13.5 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|397779287|ref|YP_006543760.1| - 0.017 15.9 0.1 0.13 13.0 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|397779287|ref|YP_006543760.1| - 0.019 14.0 0.0 0.4 9.6 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|397779287|ref|YP_006543760.1| - 0.03 14.6 0.0 0.51 10.6 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|397779287|ref|YP_006543760.1| - 0.053 13.3 0.1 0.18 11.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|397779287|ref|YP_006543760.1| - 0.086 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.16 gi|397779287|ref|YP_006543760.1| - 0.088 11.9 0.1 1.4 7.9 0.0 2.5 2 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI Amidinotransf PF02274.12 gi|397779291|ref|YP_006543764.1| - 3.6e-36 124.7 0.0 9.4e-36 123.3 0.0 1.6 1 1 0 1 1 1 1 Amidinotransferase AA_kinase PF00696.23 gi|397779292|ref|YP_006543765.1| - 1.1e-34 120.0 0.0 1.3e-34 119.8 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF4112 PF13430.1 gi|397779293|ref|YP_006543766.1| - 0.48 10.3 10.9 0.31 10.9 5.9 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4112) MFS_1 PF07690.11 gi|397779294|ref|YP_006543767.1| - 8e-15 54.3 57.1 2.6e-09 36.2 18.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1 PF07690.11 gi|397779295|ref|YP_006543768.1| - 1.3e-53 181.9 47.4 1.3e-53 181.9 32.9 2.2 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|397779295|ref|YP_006543768.1| - 9.2e-09 33.9 9.3 9.2e-09 33.9 6.4 2.8 2 2 1 3 3 3 1 Transmembrane secretion effector MFS_2 PF13347.1 gi|397779295|ref|YP_006543768.1| - 0.00013 20.4 44.5 0.00062 18.2 18.2 3.1 1 1 2 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|397779295|ref|YP_006543768.1| - 0.0019 17.9 0.0 0.0019 17.9 0.0 3.8 5 0 0 5 5 5 1 MFS_1 like family AAA_10 PF12846.2 gi|397779296|ref|YP_006543769.1| - 1e-13 51.4 0.0 2.2e-08 33.9 0.0 2.4 1 1 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|397779296|ref|YP_006543769.1| - 1.4e-11 44.7 0.0 2.2e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|397779296|ref|YP_006543769.1| - 1.6e-05 25.0 0.0 9.4e-05 22.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain MarR_2 PF12802.2 gi|397779296|ref|YP_006543769.1| - 0.00026 20.5 0.2 0.00075 19.1 0.1 1.9 1 1 1 2 2 2 1 MarR family DUF742 PF05331.6 gi|397779296|ref|YP_006543769.1| - 0.00041 19.9 0.2 0.00081 18.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF742) FtsK_SpoIIIE PF01580.13 gi|397779296|ref|YP_006543769.1| - 0.00063 19.2 0.2 0.0034 16.8 0.1 2.1 1 1 0 1 1 1 1 FtsK/SpoIIIE family TrmB PF01978.14 gi|397779296|ref|YP_006543769.1| - 0.0086 15.7 0.2 0.035 13.8 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF853 PF05872.7 gi|397779296|ref|YP_006543769.1| - 0.022 13.1 0.1 0.086 11.1 0.0 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) Rrf2 PF02082.15 gi|397779296|ref|YP_006543769.1| - 0.07 13.2 0.0 0.2 11.8 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|397779296|ref|YP_006543769.1| - 0.1 12.0 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding AAA_25 PF13481.1 gi|397779296|ref|YP_006543769.1| - 0.1 11.9 0.0 0.21 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_pol_Rpc34 PF05158.7 gi|397779296|ref|YP_006543769.1| - 0.22 10.6 0.0 0.4 9.8 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Rubredoxin PF00301.15 gi|397779297|ref|YP_006543770.1| - 5.5e-23 80.5 0.3 6e-23 80.4 0.2 1.0 1 0 0 1 1 1 1 Rubredoxin Zn-ribbon_8 PF09723.5 gi|397779297|ref|YP_006543770.1| - 0.0017 18.2 0.5 0.42 10.6 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|397779297|ref|YP_006543770.1| - 0.0048 16.1 0.2 1.1 8.5 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding UPF0547 PF10571.4 gi|397779297|ref|YP_006543770.1| - 0.012 15.2 1.6 2.3 7.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2H2_4 PF13894.1 gi|397779297|ref|YP_006543770.1| - 0.015 15.6 1.0 2.9 8.4 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-HIT PF04438.11 gi|397779297|ref|YP_006543770.1| - 0.015 14.9 3.4 0.25 11.0 0.0 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-Sec23_Sec24 PF04810.10 gi|397779297|ref|YP_006543770.1| - 0.021 14.3 2.0 1.3 8.6 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Elf1 PF05129.8 gi|397779297|ref|YP_006543770.1| - 0.023 14.3 0.3 0.12 12.0 0.0 1.9 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Desulfoferrod_N PF06397.7 gi|397779297|ref|YP_006543770.1| - 0.029 13.7 2.3 0.12 11.7 0.3 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|397779297|ref|YP_006543770.1| - 0.037 13.8 0.9 0.3 10.9 0.1 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|397779297|ref|YP_006543770.1| - 0.046 13.7 0.7 0.49 10.4 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2296 PF10058.4 gi|397779297|ref|YP_006543770.1| - 0.048 13.4 1.2 0.78 9.5 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_2 PF13240.1 gi|397779297|ref|YP_006543770.1| - 0.053 13.0 1.3 0.56 9.7 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|397779297|ref|YP_006543770.1| - 0.086 12.5 0.3 3.1 7.5 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|397779297|ref|YP_006543770.1| - 0.097 12.2 0.3 2.9 7.5 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|397779297|ref|YP_006543770.1| - 0.11 12.4 1.6 0.71 9.8 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|397779297|ref|YP_006543770.1| - 0.14 11.4 2.1 0.21 10.8 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|397779297|ref|YP_006543770.1| - 0.17 11.5 0.9 1.6 8.4 0.6 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|397779297|ref|YP_006543770.1| - 0.19 11.3 2.8 3.8 7.2 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1 PF03811.8 gi|397779297|ref|YP_006543770.1| - 0.2 11.2 2.1 2.8 7.5 0.0 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-C2H2 PF00096.21 gi|397779297|ref|YP_006543770.1| - 0.3 11.4 1.6 11 6.6 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type ADK_lid PF05191.9 gi|397779297|ref|YP_006543770.1| - 0.48 10.1 2.3 3.1 7.5 1.6 1.9 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-RanBP PF00641.13 gi|397779297|ref|YP_006543770.1| - 0.89 8.7 3.8 2.3 7.3 0.6 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn_protease PF05618.6 gi|397779299|ref|YP_006543772.1| - 2e-07 30.7 0.1 5.9e-07 29.2 0.0 1.7 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease Pep_deformylase PF01327.16 gi|397779299|ref|YP_006543772.1| - 6.8e-05 22.3 0.0 0.0017 17.7 0.0 2.0 1 1 0 1 1 1 1 Polypeptide deformylase ABC_tran PF00005.22 gi|397779300|ref|YP_006543773.1| - 5.4e-33 114.1 0.0 8.6e-33 113.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|397779300|ref|YP_006543773.1| - 3.7e-12 46.1 2.5 1.1e-11 44.6 0.6 2.4 2 0 0 2 2 2 1 TOBE domain TOBE_2 PF08402.5 gi|397779300|ref|YP_006543773.1| - 8.6e-08 32.0 0.3 2.1e-07 30.8 0.2 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|397779300|ref|YP_006543773.1| - 2.8e-07 30.8 0.0 0.0069 16.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain ABC_ATPase PF09818.4 gi|397779300|ref|YP_006543773.1| - 7.2e-05 21.5 1.5 0.0057 15.2 0.0 2.8 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|397779300|ref|YP_006543773.1| - 0.00029 20.3 0.3 0.088 12.2 0.0 2.2 1 1 1 2 2 2 2 AAA-like domain AAA_23 PF13476.1 gi|397779300|ref|YP_006543773.1| - 0.0026 18.1 0.1 0.0038 17.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|397779300|ref|YP_006543773.1| - 0.0098 15.7 0.1 0.057 13.3 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|397779300|ref|YP_006543773.1| - 0.019 14.1 0.0 1 8.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.16 gi|397779300|ref|YP_006543773.1| - 0.022 13.9 0.0 0.048 12.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|397779300|ref|YP_006543773.1| - 0.03 13.7 0.3 0.49 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|397779300|ref|YP_006543773.1| - 0.034 13.7 0.1 0.27 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|397779300|ref|YP_006543773.1| - 0.036 12.9 0.1 0.078 11.8 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_29 PF13555.1 gi|397779300|ref|YP_006543773.1| - 0.052 13.0 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|397779300|ref|YP_006543773.1| - 0.062 13.4 0.2 0.74 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|397779300|ref|YP_006543773.1| - 0.071 13.3 0.0 0.31 11.2 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|397779300|ref|YP_006543773.1| - 0.086 12.8 0.6 0.31 10.9 0.4 2.0 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|397779300|ref|YP_006543773.1| - 0.091 12.4 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|397779300|ref|YP_006543773.1| - 0.1 12.3 2.0 0.12 12.1 0.1 2.1 2 0 0 2 2 2 0 Part of AAA domain IstB_IS21 PF01695.12 gi|397779300|ref|YP_006543773.1| - 0.12 11.8 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|397779300|ref|YP_006543773.1| - 0.26 10.3 1.4 0.56 9.2 0.0 2.1 3 0 0 3 3 3 0 Zeta toxin BPD_transp_1 PF00528.17 gi|397779301|ref|YP_006543774.1| - 1.9e-22 79.6 14.2 1.9e-22 79.6 9.9 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UPF0066 PF01980.11 gi|397779302|ref|YP_006543775.1| - 1.9e-37 127.8 0.0 2.3e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 SBP_bac_11 PF13531.1 gi|397779303|ref|YP_006543776.1| - 5.3e-43 147.3 0.0 6.1e-43 147.0 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|397779303|ref|YP_006543776.1| - 4.2e-06 26.7 0.2 5.8e-05 22.9 0.1 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|397779303|ref|YP_006543776.1| - 9e-05 21.5 0.1 0.00035 19.5 0.1 1.9 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_6 PF13343.1 gi|397779303|ref|YP_006543776.1| - 0.0023 17.2 0.0 0.0058 15.9 0.0 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|397779303|ref|YP_006543776.1| - 0.0051 16.5 0.1 1.8 8.1 0.0 2.4 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|397779303|ref|YP_006543776.1| - 0.03 13.6 0.0 0.067 12.5 0.0 1.7 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein UPF0066 PF01980.11 gi|397779304|ref|YP_006543777.1| - 1.6e-38 131.3 0.0 1.8e-38 131.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 TMP-TENI PF02581.12 gi|397779305|ref|YP_006543778.1| - 5.8e-59 198.2 0.6 7.1e-59 197.9 0.4 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI FlpD PF02662.11 gi|397779305|ref|YP_006543778.1| - 0.0046 16.6 0.7 0.12 12.0 0.1 2.4 2 0 0 2 2 2 1 Methyl-viologen-reducing hydrogenase, delta subunit NMO PF03060.10 gi|397779305|ref|YP_006543778.1| - 0.022 13.9 8.1 0.073 12.1 5.6 1.9 1 1 0 1 1 1 0 Nitronate monooxygenase NanE PF04131.9 gi|397779305|ref|YP_006543778.1| - 0.028 13.4 0.1 0.05 12.5 0.0 1.3 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF4349 PF14257.1 gi|397779305|ref|YP_006543778.1| - 0.032 13.4 0.3 0.12 11.6 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) His_biosynth PF00977.16 gi|397779305|ref|YP_006543778.1| - 0.033 13.4 0.2 0.083 12.1 0.1 1.6 1 0 0 1 1 1 0 Histidine biosynthesis protein Nuc_recep-AF1 PF11825.3 gi|397779305|ref|YP_006543778.1| - 0.049 13.5 0.1 0.087 12.7 0.1 1.4 1 0 0 1 1 1 0 Nuclear/hormone receptor activator site AF-1 DUF561 PF04481.7 gi|397779305|ref|YP_006543778.1| - 0.063 12.2 0.3 0.22 10.4 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF561) Ribul_P_3_epim PF00834.14 gi|397779305|ref|YP_006543778.1| - 0.087 11.9 0.3 0.19 10.8 0.2 1.5 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Trp_syntA PF00290.15 gi|397779305|ref|YP_006543778.1| - 0.16 10.4 0.5 0.27 9.7 0.1 1.6 2 0 0 2 2 2 0 Tryptophan synthase alpha chain ThiG PF05690.9 gi|397779305|ref|YP_006543778.1| - 1.9 7.5 9.6 0.056 12.5 1.6 2.0 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG HK PF02110.10 gi|397779306|ref|YP_006543779.1| - 5.9e-79 264.6 3.0 6.8e-79 264.4 2.1 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.12 gi|397779306|ref|YP_006543779.1| - 6.2e-05 22.4 2.7 7.9e-05 22.0 1.9 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.7 gi|397779306|ref|YP_006543779.1| - 0.011 14.9 0.2 0.027 13.6 0.1 1.6 1 1 0 1 1 1 0 Phosphomethylpyrimidine kinase UPF0180 PF03698.8 gi|397779306|ref|YP_006543779.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) MCH PF02289.11 gi|397779307|ref|YP_006543780.1| - 1.2e-114 382.5 0.0 1.4e-114 382.3 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) DegV PF02645.11 gi|397779307|ref|YP_006543780.1| - 0.09 11.8 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein, DegV family COG1307 Fer4_9 PF13187.1 gi|397779308|ref|YP_006543781.1| - 1.1e-13 51.1 33.2 7.9e-09 35.6 7.9 1.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|397779308|ref|YP_006543781.1| - 8.6e-13 47.3 16.3 1e-06 28.0 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397779308|ref|YP_006543781.1| - 2.2e-12 47.1 9.9 3.1e-12 46.6 6.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397779308|ref|YP_006543781.1| - 7.1e-11 41.4 12.0 1.2e-05 24.9 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|397779308|ref|YP_006543781.1| - 1.9e-10 41.3 7.0 5.1e-05 23.9 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|397779308|ref|YP_006543781.1| - 1.2e-09 37.5 14.3 3.9e-05 23.2 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397779308|ref|YP_006543781.1| - 3.2e-09 36.4 23.1 1.4e-06 27.9 8.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397779308|ref|YP_006543781.1| - 5e-08 32.6 11.2 9.7e-05 22.1 1.0 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|397779308|ref|YP_006543781.1| - 5.4e-08 32.7 30.3 9.3e-05 22.3 8.1 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397779308|ref|YP_006543781.1| - 8.2e-07 29.3 9.5 0.0037 17.6 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397779308|ref|YP_006543781.1| - 1.7e-06 27.8 15.5 0.0014 18.8 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|397779308|ref|YP_006543781.1| - 2e-05 24.8 22.0 0.00072 19.9 4.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|397779308|ref|YP_006543781.1| - 2.3e-05 24.6 10.6 0.014 15.7 7.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397779308|ref|YP_006543781.1| - 0.0023 18.4 14.8 0.13 12.8 2.0 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|397779308|ref|YP_006543781.1| - 0.015 15.1 2.4 0.022 14.6 1.7 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|397779308|ref|YP_006543781.1| - 0.024 15.0 13.1 0.68 10.3 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Desulfoferrod_N PF06397.7 gi|397779308|ref|YP_006543781.1| - 0.038 13.3 1.3 0.038 13.3 0.9 1.7 2 0 0 2 2 1 0 Desulfoferrodoxin, N-terminal domain NADH_4Fe-4S PF10589.4 gi|397779308|ref|YP_006543781.1| - 0.26 10.4 5.4 2.7 7.2 0.2 2.2 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Pyridox_oxidase PF01243.15 gi|397779309|ref|YP_006543782.1| - 0.0051 16.7 0.0 0.0069 16.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|397779310|ref|YP_006543783.1| - 2.1e-08 34.0 0.0 3.1e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase CCG PF02754.11 gi|397779311|ref|YP_006543784.1| - 4e-07 29.9 7.3 1.4e-05 25.0 0.1 3.3 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_8 PF13183.1 gi|397779311|ref|YP_006543784.1| - 0.00039 20.3 6.7 0.00039 20.3 4.6 2.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397779311|ref|YP_006543784.1| - 0.0008 19.6 7.6 0.0008 19.6 5.3 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397779311|ref|YP_006543784.1| - 0.01 15.6 9.1 0.01 15.6 6.3 2.8 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397779311|ref|YP_006543784.1| - 0.81 10.0 14.5 0.042 14.2 5.3 2.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397779311|ref|YP_006543784.1| - 1.7 9.0 19.0 0.11 12.8 5.8 3.2 3 2 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397779311|ref|YP_006543784.1| - 4.3 7.8 17.1 0.22 11.9 4.4 3.5 3 1 1 4 4 4 0 4Fe-4S dicluster domain ParA PF10609.4 gi|397779312|ref|YP_006543785.1| - 4.4e-35 119.4 0.2 7.7e-35 118.6 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|397779312|ref|YP_006543785.1| - 1.5e-21 76.7 0.3 2.2e-21 76.1 0.2 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|397779312|ref|YP_006543785.1| - 1.1e-10 41.7 0.1 3.8e-09 36.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|397779312|ref|YP_006543785.1| - 1.3e-08 34.3 1.6 1.2e-06 27.7 0.0 2.7 2 1 1 3 3 3 1 Anion-transporting ATPase MipZ PF09140.6 gi|397779312|ref|YP_006543785.1| - 4.5e-08 32.4 0.0 1.1e-07 31.2 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|397779312|ref|YP_006543785.1| - 0.00023 20.4 0.1 0.003 16.7 0.0 2.1 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.15 gi|397779312|ref|YP_006543785.1| - 0.00031 20.4 0.0 0.00043 19.9 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_25 PF13481.1 gi|397779312|ref|YP_006543785.1| - 0.00032 20.1 0.1 0.00091 18.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.1 gi|397779312|ref|YP_006543785.1| - 0.00093 18.8 0.1 1.2 8.7 0.0 2.4 2 1 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|397779312|ref|YP_006543785.1| - 0.0032 16.6 0.1 0.0048 16.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|397779312|ref|YP_006543785.1| - 0.0047 16.4 0.0 0.008 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain ArgK PF03308.11 gi|397779312|ref|YP_006543785.1| - 0.0093 14.7 0.1 0.016 14.0 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_29 PF13555.1 gi|397779312|ref|YP_006543785.1| - 0.012 15.1 0.1 0.078 12.5 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain SRP54 PF00448.17 gi|397779312|ref|YP_006543785.1| - 0.014 14.8 0.3 0.024 14.0 0.1 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|397779312|ref|YP_006543785.1| - 0.016 14.9 1.3 0.08 12.7 0.2 2.2 2 0 0 2 2 2 0 Part of AAA domain AAA_22 PF13401.1 gi|397779312|ref|YP_006543785.1| - 0.019 15.1 0.0 0.035 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|397779312|ref|YP_006543785.1| - 0.02 14.2 0.1 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|397779312|ref|YP_006543785.1| - 0.022 15.5 0.1 0.076 13.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|397779312|ref|YP_006543785.1| - 0.025 14.2 0.2 0.041 13.5 0.1 1.3 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|397779312|ref|YP_006543785.1| - 0.025 14.7 0.0 0.047 13.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MobB PF03205.9 gi|397779312|ref|YP_006543785.1| - 0.026 14.2 0.0 0.06 13.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B zinc_ribbon_2 PF13240.1 gi|397779312|ref|YP_006543785.1| - 0.035 13.5 0.3 0.062 12.7 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain AAA_30 PF13604.1 gi|397779312|ref|YP_006543785.1| - 0.047 13.2 0.2 0.074 12.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|397779312|ref|YP_006543785.1| - 0.051 12.9 0.3 0.14 11.4 0.1 1.7 2 0 0 2 2 2 0 YhjQ protein PhnA_Zn_Ribbon PF08274.7 gi|397779312|ref|YP_006543785.1| - 0.063 13.0 0.2 0.098 12.4 0.1 1.2 1 0 0 1 1 1 0 PhnA Zinc-Ribbon NTPase_1 PF03266.10 gi|397779312|ref|YP_006543785.1| - 0.073 12.7 0.1 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_18 PF13238.1 gi|397779312|ref|YP_006543785.1| - 0.074 13.3 0.1 0.27 11.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|397779312|ref|YP_006543785.1| - 0.082 12.0 0.1 0.13 11.3 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI KTI12 PF08433.5 gi|397779312|ref|YP_006543785.1| - 0.092 11.9 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NB-ARC PF00931.17 gi|397779312|ref|YP_006543785.1| - 0.11 11.3 0.1 0.19 10.5 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain zf-ribbon_3 PF13248.1 gi|397779312|ref|YP_006543785.1| - 0.13 11.4 0.1 0.23 10.6 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain AAA_5 PF07728.9 gi|397779312|ref|YP_006543785.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) VirC1 PF07015.6 gi|397779312|ref|YP_006543785.1| - 0.15 11.1 0.0 0.36 9.8 0.0 1.6 2 0 0 2 2 2 0 VirC1 protein ISK_Channel PF02060.10 gi|397779313|ref|YP_006543786.1| - 0.12 11.9 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Slow voltage-gated potassium channel RRM_1 PF00076.17 gi|397779313|ref|YP_006543786.1| - 0.13 11.9 0.0 0.51 9.9 0.0 1.7 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PAS_9 PF13426.1 gi|397779314|ref|YP_006543787.1| - 1.3e-34 118.6 0.0 2.5e-13 50.2 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|397779314|ref|YP_006543787.1| - 3.6e-34 117.1 0.3 1.1e-12 48.0 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|397779314|ref|YP_006543787.1| - 4e-22 78.1 0.0 3e-08 33.6 0.0 4.3 4 1 0 4 4 4 3 PAS fold PAS PF00989.19 gi|397779314|ref|YP_006543787.1| - 1.8e-19 69.6 0.0 1.4e-08 34.4 0.0 3.4 3 0 0 3 3 3 3 PAS fold GAF PF01590.21 gi|397779314|ref|YP_006543787.1| - 1.3e-10 41.6 0.0 3.7e-10 40.1 0.0 1.9 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.1 gi|397779314|ref|YP_006543787.1| - 3.8e-10 40.4 0.5 1.1e-08 35.6 0.1 3.0 3 0 0 3 3 3 1 GAF domain PAS_8 PF13188.1 gi|397779314|ref|YP_006543787.1| - 1.8e-09 37.0 0.1 0.014 15.2 0.1 3.9 4 0 0 4 4 4 2 PAS domain GAF_3 PF13492.1 gi|397779314|ref|YP_006543787.1| - 6.4e-09 35.9 0.1 1.2e-07 31.8 0.0 2.9 3 0 0 3 3 3 1 GAF domain PAS_7 PF12860.2 gi|397779314|ref|YP_006543787.1| - 9.8e-06 25.5 0.2 0.0015 18.5 0.0 2.9 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|397779314|ref|YP_006543787.1| - 0.00029 20.7 2.7 0.0028 17.5 0.1 3.3 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain Cpn60_TCP1 PF00118.19 gi|397779316|ref|YP_006543789.1| - 1.2e-147 492.4 10.8 1.3e-147 492.3 7.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Pribosyltran PF00156.22 gi|397779317|ref|YP_006543790.1| - 6.6e-18 64.6 0.0 1e-17 63.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|397779317|ref|YP_006543790.1| - 0.024 13.9 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase HTH_23 PF13384.1 gi|397779317|ref|YP_006543790.1| - 0.027 14.0 0.0 0.064 12.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain UPRTase PF14681.1 gi|397779317|ref|YP_006543790.1| - 0.03 13.5 0.1 0.09 11.9 0.1 1.8 1 1 0 1 1 1 0 Uracil phosphoribosyltransferase GerE PF00196.14 gi|397779317|ref|YP_006543790.1| - 0.038 13.2 0.0 0.065 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|397779317|ref|YP_006543790.1| - 0.052 13.3 0.1 0.36 10.6 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|397779317|ref|YP_006543790.1| - 0.14 11.5 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.7 gi|397779317|ref|YP_006543790.1| - 0.14 11.6 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) UPF0278 PF08745.6 gi|590000587|ref|YP_006543791.2| - 1.3e-06 27.8 0.5 1.8e-06 27.3 0.4 1.3 1 1 0 1 1 1 1 UPF0278 family Sigma70_r4 PF04545.11 gi|590000587|ref|YP_006543791.2| - 0.0096 15.2 0.0 0.018 14.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 zf-C3HC4_3 PF13920.1 gi|590000587|ref|YP_006543791.2| - 0.02 14.5 0.5 0.032 13.9 0.4 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PIN_4 PF13638.1 gi|590000587|ref|YP_006543791.2| - 0.077 13.0 0.0 0.098 12.7 0.0 1.2 1 0 0 1 1 1 0 PIN domain DNA_ligase_ZBD PF03119.11 gi|590000587|ref|YP_006543791.2| - 0.22 11.2 0.2 0.22 11.2 0.1 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|590000587|ref|YP_006543791.2| - 0.9 9.5 6.5 14 5.7 4.5 2.4 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|590000587|ref|YP_006543791.2| - 1.2 8.8 7.4 5.3 6.8 0.1 2.6 3 0 0 3 3 3 0 Nudix N-terminal RTC PF01137.16 gi|590000588|ref|YP_006543792.2| - 4.1e-61 205.6 0.0 5.4e-61 205.2 0.0 1.1 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|590000588|ref|YP_006543792.2| - 3e-15 56.0 0.1 5.3e-15 55.2 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Pribosyltran_N PF13793.1 gi|397779320|ref|YP_006543793.1| - 8.4e-23 80.3 0.0 1.4e-20 73.1 0.0 2.3 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|397779320|ref|YP_006543793.1| - 5.3e-15 55.2 0.4 3.9e-14 52.4 0.2 2.3 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|397779320|ref|YP_006543793.1| - 1.3e-09 38.0 0.6 2.2e-09 37.3 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|397779320|ref|YP_006543793.1| - 0.00058 19.1 0.1 0.00092 18.4 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|397779320|ref|YP_006543793.1| - 0.0016 17.7 0.0 0.039 13.2 0.0 2.2 1 1 0 1 1 1 1 Phosphoribosyl transferase Lon_C PF05362.8 gi|397779321|ref|YP_006543794.1| - 3.3e-35 121.2 2.6 5.2e-35 120.6 1.8 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|397779321|ref|YP_006543794.1| - 2.9e-31 108.7 0.0 1.5e-22 79.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|397779321|ref|YP_006543794.1| - 2.4e-17 62.7 0.1 8.1e-11 41.4 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|397779321|ref|YP_006543794.1| - 1.5e-15 57.1 0.0 9e-09 35.0 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.9 gi|397779321|ref|YP_006543794.1| - 4.8e-11 42.5 0.0 0.00034 20.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|397779321|ref|YP_006543794.1| - 2.1e-10 39.9 0.1 0.027 13.2 0.0 3.3 3 0 0 3 3 3 3 MCM2/3/5 family ChlI PF13541.1 gi|397779321|ref|YP_006543794.1| - 9.8e-10 37.9 0.4 2e-09 37.0 0.3 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.24 gi|397779321|ref|YP_006543794.1| - 2.1e-07 31.1 0.0 0.009 16.2 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|397779321|ref|YP_006543794.1| - 2.6e-06 27.5 0.0 0.072 13.1 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|397779321|ref|YP_006543794.1| - 2.8e-06 26.5 0.0 0.0021 17.1 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|397779321|ref|YP_006543794.1| - 4.3e-06 26.9 0.0 0.0026 17.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|397779321|ref|YP_006543794.1| - 1.5e-05 24.5 0.0 0.076 12.6 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|397779321|ref|YP_006543794.1| - 0.0004 20.0 0.0 0.0013 18.4 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|397779321|ref|YP_006543794.1| - 0.00079 18.7 0.0 0.0028 16.9 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.1 gi|397779321|ref|YP_006543794.1| - 0.0024 17.4 0.0 0.0053 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|397779321|ref|YP_006543794.1| - 0.0026 17.6 0.0 1.4 8.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|397779321|ref|YP_006543794.1| - 0.0039 17.0 0.0 0.013 15.3 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|397779321|ref|YP_006543794.1| - 0.0052 16.7 0.0 0.28 11.1 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain Parvo_NS1 PF01057.12 gi|397779321|ref|YP_006543794.1| - 0.0054 15.6 0.0 0.009 14.9 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_18 PF13238.1 gi|397779321|ref|YP_006543794.1| - 0.0058 16.9 0.0 0.016 15.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|397779321|ref|YP_006543794.1| - 0.0098 14.8 0.0 0.026 13.4 0.0 1.7 2 0 0 2 2 1 1 Type II/IV secretion system protein NACHT PF05729.7 gi|397779321|ref|YP_006543794.1| - 0.01 15.5 0.0 0.05 13.2 0.0 2.0 2 0 0 2 2 2 1 NACHT domain DUF815 PF05673.8 gi|397779321|ref|YP_006543794.1| - 0.014 14.3 0.0 0.03 13.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|397779321|ref|YP_006543794.1| - 0.028 13.8 0.0 0.065 12.6 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|397779321|ref|YP_006543794.1| - 0.03 15.1 0.0 0.52 11.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|397779321|ref|YP_006543794.1| - 0.041 14.1 0.0 0.12 12.6 0.0 1.7 2 0 0 2 2 1 0 ABC transporter Zeta_toxin PF06414.7 gi|397779321|ref|YP_006543794.1| - 0.055 12.5 0.0 0.16 11.0 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|397779321|ref|YP_006543794.1| - 0.057 12.0 0.0 0.11 11.1 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Ribosomal_L18_c PF14204.1 gi|397779321|ref|YP_006543794.1| - 0.1 13.1 0.1 0.23 12.0 0.1 1.6 1 0 0 1 1 1 0 Ribosomal L18 C-terminal region KTI12 PF08433.5 gi|397779321|ref|YP_006543794.1| - 0.14 11.3 0.0 0.57 9.3 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 PmbA_TldD PF01523.11 gi|397779322|ref|YP_006543795.1| - 2.4e-57 194.4 0.2 2.9e-57 194.2 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|397779323|ref|YP_006543796.1| - 4.5e-65 219.8 0.2 5.4e-65 219.5 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase BofA PF07441.6 gi|397779324|ref|YP_006543797.1| - 1.2e-16 60.3 15.4 1.4e-16 60.2 10.7 1.0 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Gate PF07670.9 gi|397779324|ref|YP_006543797.1| - 4.4 7.2 6.9 1.1 9.2 1.8 2.0 1 1 1 2 2 2 0 Nucleoside recognition DUF3353 PF11833.3 gi|397779324|ref|YP_006543797.1| - 9.1 5.6 7.0 14 5.0 4.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3353) KaiC PF06745.8 gi|397779325|ref|YP_006543798.1| - 7.3e-49 165.9 0.0 8.2e-49 165.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|397779325|ref|YP_006543798.1| - 9e-12 44.7 0.0 1.1e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|397779325|ref|YP_006543798.1| - 5.9e-07 29.4 0.0 1.2e-05 25.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|397779325|ref|YP_006543798.1| - 4.8e-06 26.1 0.1 0.00021 20.7 0.0 2.1 1 1 0 2 2 2 1 IstB-like ATP binding protein GvpD PF07088.6 gi|397779325|ref|YP_006543798.1| - 6.9e-05 21.3 0.4 0.00039 18.8 0.3 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|397779325|ref|YP_006543798.1| - 0.0013 18.4 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|397779325|ref|YP_006543798.1| - 0.0028 17.8 0.1 0.0076 16.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_31 PF13614.1 gi|397779325|ref|YP_006543798.1| - 0.0034 17.3 0.0 0.0052 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|397779325|ref|YP_006543798.1| - 0.0035 18.1 0.0 0.0044 17.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|397779325|ref|YP_006543798.1| - 0.0041 16.8 0.0 0.0062 16.2 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase RecA PF00154.16 gi|397779325|ref|YP_006543798.1| - 0.017 14.1 0.0 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein PhoH PF02562.11 gi|397779325|ref|YP_006543798.1| - 0.023 13.9 0.0 0.069 12.3 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_28 PF13521.1 gi|397779325|ref|YP_006543798.1| - 0.027 14.4 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|397779325|ref|YP_006543798.1| - 0.052 12.5 0.0 0.054 12.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF2791 PF10923.3 gi|397779325|ref|YP_006543798.1| - 0.062 11.8 0.0 0.089 11.3 0.0 1.1 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) AAA_10 PF12846.2 gi|397779325|ref|YP_006543798.1| - 0.066 12.6 0.0 0.096 12.1 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain CdhD PF03599.11 gi|397779325|ref|YP_006543798.1| - 0.069 11.6 0.0 0.088 11.2 0.0 1.1 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit AAA_24 PF13479.1 gi|397779325|ref|YP_006543798.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|397779325|ref|YP_006543798.1| - 0.11 12.7 0.1 0.2 11.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|397779325|ref|YP_006543798.1| - 0.11 12.1 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DnaB_C PF03796.10 gi|397779325|ref|YP_006543798.1| - 0.12 11.2 0.0 0.34 9.7 0.0 1.7 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain TrwB_AAD_bind PF10412.4 gi|397779325|ref|YP_006543798.1| - 0.12 11.0 0.0 0.19 10.2 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Miro PF08477.8 gi|397779325|ref|YP_006543798.1| - 0.16 12.5 0.0 0.33 11.4 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein KaiC PF06745.8 gi|397779326|ref|YP_006543799.1| - 2.8e-06 26.6 0.0 1.1e-05 24.6 0.0 1.9 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|397779326|ref|YP_006543799.1| - 3.6e-06 26.5 0.1 9.4e-05 21.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|397779326|ref|YP_006543799.1| - 0.074 11.9 0.0 0.24 10.2 0.0 1.8 2 0 0 2 2 2 0 Rad51 PAXNEB PF05625.6 gi|397779326|ref|YP_006543799.1| - 0.12 11.2 0.4 0.45 9.2 0.2 1.8 2 0 0 2 2 2 0 PAXNEB protein T2SE PF00437.15 gi|397779327|ref|YP_006543800.1| - 1.5e-46 158.5 0.0 2.1e-46 158.0 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|397779327|ref|YP_006543800.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SF PF00482.18 gi|397779328|ref|YP_006543801.1| - 3.5e-29 101.2 13.7 4.4e-17 62.1 0.9 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF3552 PF12072.3 gi|397779330|ref|YP_006543803.1| - 0.00076 18.7 16.2 0.00078 18.7 10.6 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF3552) ATP-synt_B PF00430.13 gi|397779330|ref|YP_006543803.1| - 0.0022 17.8 18.0 0.01 15.6 12.6 1.8 1 1 1 2 2 2 1 ATP synthase B/B' CF(0) V-ATPase_G PF03179.10 gi|397779330|ref|YP_006543803.1| - 0.049 13.9 15.7 0.17 12.1 11.0 1.8 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit BOP1NT PF08145.7 gi|397779330|ref|YP_006543803.1| - 0.08 12.6 3.0 0.086 12.5 2.0 1.0 1 0 0 1 1 1 0 BOP1NT (NUC169) domain Vps51 PF08700.6 gi|397779330|ref|YP_006543803.1| - 0.087 12.6 5.8 1.9 8.3 0.3 2.2 2 0 0 2 2 2 0 Vps51/Vps67 Bac_small_YrzI PF09501.5 gi|397779330|ref|YP_006543803.1| - 0.28 11.1 0.3 0.28 11.1 0.2 2.1 2 1 0 2 2 2 0 Probable sporulation protein (Bac_small_yrzI) AMP-binding_C_2 PF14535.1 gi|397779330|ref|YP_006543803.1| - 0.66 10.0 3.1 1.1 9.4 2.1 1.6 1 1 0 1 1 1 0 AMP-binding enzyme C-terminal domain vATP-synt_E PF01991.13 gi|397779330|ref|YP_006543803.1| - 0.88 8.8 14.3 0.14 11.4 1.8 2.2 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit HlyD_2 PF12700.2 gi|397779330|ref|YP_006543803.1| - 0.93 8.5 5.9 0.94 8.5 4.1 1.1 1 0 0 1 1 1 0 HlyD family secretion protein DivIVA PF05103.8 gi|397779330|ref|YP_006543803.1| - 1.5 8.8 13.5 11 6.1 9.4 1.9 1 1 0 1 1 1 0 DivIVA protein Vma12 PF11712.3 gi|397779330|ref|YP_006543803.1| - 1.6 8.4 6.2 15 5.2 4.3 2.0 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase OmpH PF03938.9 gi|397779330|ref|YP_006543803.1| - 1.8 8.5 16.3 7.1 6.5 11.4 1.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) RRF PF01765.14 gi|397779330|ref|YP_006543803.1| - 1.8 8.0 10.1 2.7 7.4 4.6 2.0 1 1 1 2 2 2 0 Ribosome recycling factor HrpE PF06188.7 gi|397779330|ref|YP_006543803.1| - 8 6.1 11.1 39 3.9 6.9 1.9 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E V_ATPase_I PF01496.14 gi|397779331|ref|YP_006543804.1| - 2.1e-90 303.7 14.0 8.5e-56 189.2 1.7 3.9 1 1 0 3 3 3 3 V-type ATPase 116kDa subunit family BAR PF03114.13 gi|397779331|ref|YP_006543804.1| - 0.011 15.2 0.1 0.022 14.2 0.0 1.5 2 0 0 2 2 2 0 BAR domain ATP-synt_C PF00137.16 gi|397779332|ref|YP_006543805.1| - 4.5e-19 68.1 12.0 5.4e-19 67.8 8.3 1.1 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.13 gi|397779333|ref|YP_006543806.1| - 4.1e-21 75.1 3.6 5.7e-21 74.7 2.5 1.2 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit MRP-S31 PF15433.1 gi|397779333|ref|YP_006543806.1| - 0.021 14.2 1.3 0.029 13.8 0.9 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S31 Radical_SAM_N PF08497.5 gi|397779333|ref|YP_006543806.1| - 0.11 11.4 0.2 0.14 11.0 0.1 1.1 1 0 0 1 1 1 0 Radical SAM N-terminal DUF2968 PF11180.3 gi|397779333|ref|YP_006543806.1| - 1.1 8.6 7.5 0.11 11.8 1.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) ATP-synt_B PF00430.13 gi|397779333|ref|YP_006543806.1| - 1.6 8.5 13.3 1.1 9.0 7.0 2.1 2 0 0 2 2 2 0 ATP synthase B/B' CF(0) DUF883 PF05957.8 gi|397779333|ref|YP_006543806.1| - 2 8.8 7.7 2.8 8.3 4.6 1.9 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) vATP-synt_AC39 PF01992.11 gi|397779334|ref|YP_006543807.1| - 2e-73 247.4 0.5 2.3e-73 247.2 0.4 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.12 gi|397779335|ref|YP_006543808.1| - 1.2e-18 67.2 0.2 1.4e-18 67.0 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit CofC PF01983.11 gi|397779335|ref|YP_006543808.1| - 0.083 11.8 0.1 0.089 11.7 0.0 1.0 1 0 0 1 1 1 0 Guanylyl transferase CofC like ATP-synt_ab PF00006.20 gi|397779336|ref|YP_006543809.1| - 6.3e-99 329.7 0.0 1.1e-98 328.9 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|397779336|ref|YP_006543809.1| - 1.6e-21 76.8 0.6 2.9e-21 76.0 0.4 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|397779336|ref|YP_006543809.1| - 1.9e-12 47.2 1.8 6.9e-12 45.4 1.2 2.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|397779336|ref|YP_006543809.1| - 0.0056 16.7 0.2 0.45 10.5 0.0 2.6 2 0 0 2 2 2 1 Peptidase family M23 AAA_22 PF13401.1 gi|397779336|ref|YP_006543809.1| - 0.054 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF1932 PF09130.6 gi|397779336|ref|YP_006543809.1| - 0.056 13.1 3.6 1.6 8.4 0.2 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1932) ATP-synt_ab PF00006.20 gi|397779337|ref|YP_006543810.1| - 2.2e-57 194.0 0.0 2.9e-57 193.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|397779337|ref|YP_006543810.1| - 1.2e-18 67.6 0.3 2.3e-18 66.7 0.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|397779337|ref|YP_006543810.1| - 1.6e-10 41.0 2.5 1.6e-10 41.0 1.7 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|397779337|ref|YP_006543810.1| - 0.029 14.2 1.1 0.099 12.5 0.7 1.9 1 0 0 1 1 1 0 HAS barrel domain ATP-synt_D PF01813.12 gi|397779338|ref|YP_006543811.1| - 2.8e-64 216.3 8.0 3.1e-64 216.1 5.5 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF1322 PF07032.6 gi|397779338|ref|YP_006543811.1| - 0.052 13.7 0.1 0.099 12.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1322) MtrG PF04210.8 gi|397779338|ref|YP_006543811.1| - 0.44 10.2 2.5 2.7 7.7 0.1 2.4 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G PGK PF00162.14 gi|397779339|ref|YP_006543812.1| - 4.6e-113 377.6 0.0 5.2e-113 377.4 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DUF89 PF01937.14 gi|397779340|ref|YP_006543813.1| - 1.3e-49 168.9 0.0 1.4e-49 168.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 DUF2304 PF10066.4 gi|397779341|ref|YP_006543814.1| - 0.00095 19.0 1.8 0.0011 18.8 1.3 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) DUF4446 PF14584.1 gi|397779341|ref|YP_006543814.1| - 0.0094 15.7 2.1 0.0098 15.7 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4446) DUF2681 PF10883.3 gi|397779341|ref|YP_006543814.1| - 0.033 14.4 0.3 0.034 14.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) DUF948 PF06103.6 gi|397779341|ref|YP_006543814.1| - 0.049 13.4 0.6 0.06 13.2 0.4 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) HAMP PF00672.20 gi|397779341|ref|YP_006543814.1| - 0.049 13.8 0.3 0.076 13.2 0.2 1.2 1 0 0 1 1 1 0 HAMP domain Prominin PF05478.6 gi|397779341|ref|YP_006543814.1| - 0.087 10.3 0.9 0.095 10.2 0.6 1.0 1 0 0 1 1 1 0 Prominin Col_cuticle_N PF01484.12 gi|397779341|ref|YP_006543814.1| - 0.14 11.8 3.6 0.2 11.3 2.5 1.2 1 0 0 1 1 1 0 Nematode cuticle collagen N-terminal domain Tmemb_9 PF05434.6 gi|397779341|ref|YP_006543814.1| - 0.15 11.8 2.3 0.15 11.7 1.6 1.2 1 0 0 1 1 1 0 TMEM9 Pox_A28 PF04584.9 gi|397779341|ref|YP_006543814.1| - 0.25 11.1 1.4 0.24 11.2 0.9 1.1 1 0 0 1 1 1 0 Poxvirus A28 family Sigma_reg_N PF13800.1 gi|397779341|ref|YP_006543814.1| - 0.8 9.7 4.0 0.97 9.5 2.8 1.2 1 0 0 1 1 1 0 Sigma factor regulator N-terminal DUF3278 PF11683.3 gi|397779341|ref|YP_006543814.1| - 0.87 9.5 4.6 1.4 8.8 3.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3278) ODV-E18 PF10717.4 gi|397779341|ref|YP_006543814.1| - 2.7 7.4 7.7 3.1 7.2 5.3 1.2 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Vpu PF00558.14 gi|397779341|ref|YP_006543814.1| - 3.2 7.3 4.9 4 7.0 3.4 1.3 1 1 0 1 1 1 0 Vpu protein CbiA PF01656.18 gi|397779342|ref|YP_006543815.1| - 6.1e-28 97.5 0.3 8e-28 97.1 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|397779342|ref|YP_006543815.1| - 5.8e-14 51.9 0.8 2.9e-13 49.6 0.6 1.8 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|397779342|ref|YP_006543815.1| - 2.5e-13 50.2 0.0 3.5e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|397779342|ref|YP_006543815.1| - 4.4e-07 29.2 1.7 3.2e-06 26.4 0.5 2.5 2 1 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|397779342|ref|YP_006543815.1| - 1.8e-06 27.2 2.7 5.4e-06 25.6 0.6 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|397779342|ref|YP_006543815.1| - 3e-06 26.7 0.0 6.5e-06 25.6 0.0 1.5 1 1 0 1 1 1 1 YhjQ protein AAA_26 PF13500.1 gi|397779342|ref|YP_006543815.1| - 0.00029 20.5 1.5 0.0073 15.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain ParA PF10609.4 gi|397779342|ref|YP_006543815.1| - 0.00035 20.3 0.2 0.0009 19.0 0.1 1.7 2 0 0 2 2 2 1 ParA/MinD ATPase like Chlorosome_CsmC PF11098.3 gi|397779342|ref|YP_006543815.1| - 0.0048 16.6 0.1 0.0073 16.0 0.1 1.3 1 0 0 1 1 1 1 Chlorosome envelope protein C AAA_25 PF13481.1 gi|397779342|ref|YP_006543815.1| - 0.014 14.8 0.3 0.042 13.2 0.1 1.8 2 0 0 2 2 2 0 AAA domain VirC1 PF07015.6 gi|397779342|ref|YP_006543815.1| - 0.027 13.5 0.4 0.043 12.8 0.3 1.3 1 0 0 1 1 1 0 VirC1 protein MobB PF03205.9 gi|397779342|ref|YP_006543815.1| - 0.047 13.3 0.3 0.1 12.3 0.2 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|397779342|ref|YP_006543815.1| - 0.054 14.3 0.1 0.26 12.1 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|397779342|ref|YP_006543815.1| - 0.096 12.1 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain SRP54 PF00448.17 gi|397779342|ref|YP_006543815.1| - 0.13 11.6 2.2 0.14 11.6 0.6 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF1611 PF07755.6 gi|397779342|ref|YP_006543815.1| - 0.13 10.8 2.2 0.45 9.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) Robl_LC7 PF03259.12 gi|397779343|ref|YP_006543816.1| - 5.9e-06 25.7 0.5 8.6e-06 25.2 0.4 1.3 1 0 0 1 1 1 1 Roadblock/LC7 domain AstB PF04996.7 gi|397779343|ref|YP_006543816.1| - 0.035 12.9 0.3 0.042 12.6 0.2 1.2 1 0 0 1 1 1 0 Succinylarginine dihydrolase NapD PF03927.8 gi|397779343|ref|YP_006543816.1| - 0.099 12.4 0.1 1.1 9.1 0.0 2.1 2 0 0 2 2 2 0 NapD protein Response_reg PF00072.19 gi|397779344|ref|YP_006543817.1| - 4.6e-21 74.9 0.0 1.1e-20 73.7 0.0 1.6 2 0 0 2 2 2 1 Response regulator receiver domain AAA_22 PF13401.1 gi|397779344|ref|YP_006543817.1| - 0.064 13.3 0.4 0.12 12.5 0.2 1.6 1 1 0 1 1 1 0 AAA domain PsiE PF06146.7 gi|397779345|ref|YP_006543818.1| - 3.3e-09 36.8 7.1 3.3e-09 36.8 5.0 1.9 2 0 0 2 2 2 1 Phosphate-starvation-inducible E Glycos_transf_4 PF00953.16 gi|397779345|ref|YP_006543818.1| - 1.8 8.3 10.0 2.3 7.9 6.5 1.5 1 1 1 2 2 2 0 Glycosyl transferase family 4 MerC PF03203.9 gi|397779345|ref|YP_006543818.1| - 8.6 6.7 10.5 13 6.2 6.6 1.7 1 1 1 2 2 2 0 MerC mercury resistance protein RNA_pol_Rpb2_1 PF04563.10 gi|397779346|ref|YP_006543819.1| - 3.6e-54 182.7 0.0 4.4e-54 182.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.11 gi|397779346|ref|YP_006543819.1| - 2.1e-24 85.0 0.0 3.9e-24 84.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.9 gi|397779346|ref|YP_006543819.1| - 4.3e-18 65.4 0.5 2.8e-17 62.7 0.4 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_6 PF00562.23 gi|397779347|ref|YP_006543820.1| - 4.3e-126 420.7 0.0 5.7e-126 420.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|397779347|ref|YP_006543820.1| - 2.2e-29 101.5 0.2 4.3e-29 100.6 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|397779347|ref|YP_006543820.1| - 2.9e-20 71.8 1.5 6.4e-20 70.7 1.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|397779347|ref|YP_006543820.1| - 1.1e-13 50.9 1.1 2.3e-13 49.9 0.8 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.7 gi|397779348|ref|YP_006543821.1| - 2e-87 293.6 0.0 2e-87 293.6 0.0 2.2 2 1 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|397779348|ref|YP_006543821.1| - 5.7e-63 211.7 0.0 8.9e-63 211.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|397779348|ref|YP_006543821.1| - 2.2e-32 111.0 0.0 3.9e-32 110.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.13 gi|397779348|ref|YP_006543821.1| - 2.3e-31 108.6 0.0 4.5e-31 107.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|397779348|ref|YP_006543821.1| - 5e-31 107.9 0.1 1.1e-30 106.8 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-ISL3 PF14690.1 gi|397779348|ref|YP_006543821.1| - 0.14 12.2 0.1 0.14 12.2 0.1 2.7 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|397779348|ref|YP_006543821.1| - 4.8 6.5 6.7 1 8.6 1.0 2.5 2 1 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb1_5 PF04998.12 gi|397779349|ref|YP_006543822.1| - 8.7e-52 176.0 0.2 1.2e-51 175.5 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Ribosomal_L7Ae PF01248.21 gi|397779350|ref|YP_006543823.1| - 9.3e-16 57.1 0.1 1.1e-15 56.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LpxD PF04613.9 gi|397779350|ref|YP_006543823.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KH_2 PF07650.12 gi|397779351|ref|YP_006543824.1| - 5.6e-19 67.4 0.4 1.5e-13 50.1 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|397779351|ref|YP_006543824.1| - 9.2e-13 47.8 0.0 2.5e-12 46.4 0.0 1.7 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|397779351|ref|YP_006543824.1| - 5.2e-07 29.2 1.3 0.0013 18.3 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|397779351|ref|YP_006543824.1| - 2.6e-06 26.9 0.1 0.085 12.5 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|397779351|ref|YP_006543824.1| - 2 8.1 4.9 9 6.0 0.0 3.3 3 1 0 3 3 3 0 KH domain Ribosomal_60s PF00428.14 gi|397779352|ref|YP_006543825.1| - 5.6e-22 77.9 24.4 6.8e-22 77.6 16.9 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TFIID_30kDa PF03540.8 gi|397779352|ref|YP_006543825.1| - 0.061 13.1 0.0 0.13 12.1 0.0 1.6 1 1 1 2 2 2 0 Transcription initiation factor TFIID 23-30kDa subunit Sigma70_ner PF04546.8 gi|397779352|ref|YP_006543825.1| - 0.076 12.6 2.0 0.088 12.4 1.4 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF1631 PF07793.6 gi|397779352|ref|YP_006543825.1| - 0.52 8.3 4.1 0.56 8.2 2.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) DUF3138 PF11336.3 gi|397779352|ref|YP_006543825.1| - 3.1 5.8 6.3 3.4 5.7 4.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) Ribosomal_L10 PF00466.15 gi|397779353|ref|YP_006543826.1| - 5.8e-25 87.1 0.0 1.4e-24 85.8 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|397779353|ref|YP_006543826.1| - 8.1e-08 32.5 23.1 8.1e-08 32.5 16.0 2.7 2 2 1 3 3 3 1 60s Acidic ribosomal protein Ribosomal_L1 PF00687.16 gi|397779354|ref|YP_006543827.1| - 9.7e-46 155.8 0.0 1.1e-45 155.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.9 gi|397779355|ref|YP_006543828.1| - 1.8e-25 88.1 1.3 1.8e-25 88.1 0.9 1.9 2 1 1 3 3 3 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|397779355|ref|YP_006543828.1| - 7.1e-22 77.3 0.3 1.1e-21 76.6 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Tautomerase_3 PF14832.1 gi|397779355|ref|YP_006543828.1| - 0.093 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative oxalocrotonate tautomerase enzyme Spt5-NGN PF03439.8 gi|397779356|ref|YP_006543829.1| - 3.4e-22 77.9 0.4 3.4e-22 77.9 0.3 1.5 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|397779356|ref|YP_006543829.1| - 2.1e-06 27.2 0.3 2.1e-06 27.2 0.2 2.7 3 0 0 3 3 3 1 KOW motif NusG PF02357.14 gi|397779356|ref|YP_006543829.1| - 0.00036 20.7 0.7 0.0015 18.7 0.1 2.2 2 1 0 2 2 2 1 Transcription termination factor nusG Synaptonemal_3 PF15191.1 gi|397779356|ref|YP_006543829.1| - 0.08 12.6 0.0 0.17 11.6 0.0 1.6 1 1 1 2 2 2 0 Synaptonemal complex central element protein 3 SecE PF00584.15 gi|397779357|ref|YP_006543830.1| - 0.0057 16.1 0.4 0.0083 15.6 0.3 1.2 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex DUF3425 PF11905.3 gi|397779357|ref|YP_006543830.1| - 0.019 14.8 0.2 0.022 14.6 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3425) CbtB PF09489.5 gi|397779357|ref|YP_006543830.1| - 0.13 12.2 0.1 0.16 11.8 0.1 1.1 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtB) Tubulin PF00091.20 gi|397779358|ref|YP_006543831.1| - 3.2e-38 131.7 0.4 8.6e-38 130.3 0.3 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|397779358|ref|YP_006543831.1| - 1.4e-35 121.2 1.7 2e-35 120.7 0.4 1.9 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.1 gi|397779358|ref|YP_006543831.1| - 0.083 11.8 0.1 0.083 11.8 0.1 1.5 2 0 0 2 2 2 0 Tubulin like ThiF PF00899.16 gi|397779358|ref|YP_006543831.1| - 0.13 12.1 0.5 0.42 10.4 0.1 2.0 2 0 0 2 2 2 0 ThiF family tRNA_deacylase PF04414.7 gi|397779359|ref|YP_006543832.1| - 4.3e-69 231.8 0.0 5.9e-69 231.4 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase MoeA_N PF03453.12 gi|397779361|ref|YP_006543834.1| - 4.2e-46 156.2 1.0 6.6e-46 155.6 0.7 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|397779361|ref|YP_006543834.1| - 1.2e-27 96.0 0.1 2e-27 95.3 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|397779361|ref|YP_006543834.1| - 4.5e-18 64.9 0.3 1.2e-17 63.5 0.1 2.0 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Glu_synthase PF01645.12 gi|397779361|ref|YP_006543834.1| - 0.082 11.7 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase Peptidase_C26 PF07722.8 gi|397779361|ref|YP_006543834.1| - 0.11 11.8 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Peptidase C26 PBP_like PF12727.2 gi|397779362|ref|YP_006543835.1| - 6e-55 185.1 0.1 1.1e-52 177.7 0.0 2.5 3 0 0 3 3 3 2 PBP superfamily domain MoeA_N PF03453.12 gi|397779362|ref|YP_006543835.1| - 6e-32 110.2 0.3 7e-31 106.7 0.2 2.3 1 1 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|397779362|ref|YP_006543835.1| - 3.5e-27 94.5 0.1 7.8e-27 93.4 0.1 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|397779362|ref|YP_006543835.1| - 8.7e-09 35.2 0.2 2.9e-08 33.5 0.1 2.0 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Phosphonate-bd PF12974.2 gi|397779362|ref|YP_006543835.1| - 0.0016 17.8 0.0 0.0088 15.4 0.0 1.9 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.15 gi|397779362|ref|YP_006543835.1| - 0.019 14.0 1.0 0.079 12.0 0.1 2.5 2 1 0 2 2 2 0 LysR substrate binding domain Lysine_decarbox PF03641.9 gi|397779363|ref|YP_006543836.1| - 1.1e-10 41.4 0.3 1.7e-10 40.7 0.2 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|397779363|ref|YP_006543836.1| - 0.0001 21.2 2.9 0.00089 18.2 0.7 2.0 2 0 0 2 2 2 2 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.10 gi|397779363|ref|YP_006543836.1| - 0.00029 20.6 0.1 0.00042 20.1 0.0 1.2 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DAGK_cat PF00781.19 gi|397779363|ref|YP_006543836.1| - 0.78 9.1 8.0 0.99 8.8 0.3 2.2 1 1 1 2 2 2 0 Diacylglycerol kinase catalytic domain tRNA-synt_1 PF00133.17 gi|397779364|ref|YP_006543837.1| - 9.1e-197 654.7 0.0 1.1e-196 654.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|397779364|ref|YP_006543837.1| - 3.2e-31 108.1 0.2 8.4e-31 106.7 0.0 1.8 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|397779364|ref|YP_006543837.1| - 1.6e-30 106.0 1.2 9.7e-12 44.2 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|397779364|ref|YP_006543837.1| - 8.3e-06 25.1 0.0 3.5e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|397779364|ref|YP_006543837.1| - 2.4e-05 23.2 0.1 0.00021 20.1 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class I (K) Thg1C PF14413.1 gi|397779365|ref|YP_006543838.1| - 3.3e-27 94.5 0.0 4.8e-27 94.0 0.0 1.1 1 0 0 1 1 1 1 Thg1 C terminal domain Thg1 PF04446.7 gi|397779365|ref|YP_006543838.1| - 9.3e-27 93.2 0.0 1.4e-26 92.7 0.0 1.3 1 0 0 1 1 1 1 tRNAHis guanylyltransferase UPF0175 PF03683.8 gi|397779365|ref|YP_006543838.1| - 0.029 13.8 0.1 0.052 13.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) PRC PF05239.11 gi|590000589|ref|YP_006543839.2| - 3.1e-10 39.7 2.4 4e-10 39.4 1.7 1.1 1 0 0 1 1 1 1 PRC-barrel domain CBS PF00571.23 gi|397779366|ref|YP_006543840.1| - 1.9e-29 101.1 4.8 1.3e-15 56.9 0.6 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|397779366|ref|YP_006543840.1| - 1.5e-16 59.9 21.5 9e-14 50.8 3.6 2.9 2 1 1 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|397779366|ref|YP_006543840.1| - 0.066 12.5 12.7 0.072 12.4 7.7 2.0 1 1 0 1 1 1 0 Peptidase M50B-like DUF2755 PF10954.3 gi|397779366|ref|YP_006543840.1| - 2.8 7.6 5.9 0.86 9.3 0.1 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF2755) Radical_SAM PF04055.16 gi|397779368|ref|YP_006543841.1| - 9.7e-17 61.6 0.0 1.5e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.2 gi|397779368|ref|YP_006543841.1| - 3.1e-05 23.8 0.0 7.3e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|397779368|ref|YP_006543841.1| - 0.014 15.0 0.1 0.23 11.2 0.1 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif MAF_flag10 PF01973.13 gi|397779369|ref|YP_006543842.1| - 2.1e-31 108.7 0.0 2.4e-31 108.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TrkA_N PF02254.13 gi|397779370|ref|YP_006543843.1| - 1.7e-22 79.6 0.0 3.8e-22 78.4 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.15 gi|397779370|ref|YP_006543843.1| - 5.4e-14 52.0 0.3 9.1e-13 48.0 0.0 2.3 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|397779370|ref|YP_006543843.1| - 4.2e-08 32.7 0.0 9e-08 31.7 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain Saccharop_dh PF03435.13 gi|397779370|ref|YP_006543843.1| - 0.0088 15.0 0.0 0.013 14.4 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|397779370|ref|YP_006543843.1| - 0.031 14.5 0.0 0.095 12.9 0.0 1.9 1 1 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|397779370|ref|YP_006543843.1| - 0.092 12.1 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|397779370|ref|YP_006543843.1| - 0.12 11.7 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PALP PF00291.20 gi|397779370|ref|YP_006543843.1| - 0.16 11.2 0.1 8.9 5.4 0.0 2.7 3 0 0 3 3 3 0 Pyridoxal-phosphate dependent enzyme ABC_tran PF00005.22 gi|397779371|ref|YP_006543844.1| - 7.7e-28 97.4 0.0 1.1e-27 97.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397779371|ref|YP_006543844.1| - 2.5e-15 57.2 0.0 1e-08 35.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|397779371|ref|YP_006543844.1| - 4.7e-05 23.7 0.0 8.4e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|397779371|ref|YP_006543844.1| - 0.00064 19.1 0.3 0.0019 17.7 0.2 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|397779371|ref|YP_006543844.1| - 0.0023 18.0 0.1 0.045 13.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|397779371|ref|YP_006543844.1| - 0.0098 14.9 0.0 0.15 11.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|397779371|ref|YP_006543844.1| - 0.03 13.5 0.0 3.4 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_14 PF13173.1 gi|397779371|ref|YP_006543844.1| - 0.094 12.6 0.0 3.3 7.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|397779371|ref|YP_006543844.1| - 0.095 12.4 0.2 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|397779371|ref|YP_006543844.1| - 0.11 11.9 0.0 0.42 10.0 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|397779371|ref|YP_006543844.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.6 1 1 1 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|397779371|ref|YP_006543844.1| - 0.14 13.0 0.5 0.53 11.1 0.2 2.2 2 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|397779371|ref|YP_006543844.1| - 0.15 11.2 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|397779371|ref|YP_006543844.1| - 0.17 12.4 0.0 0.31 11.5 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|397779371|ref|YP_006543844.1| - 0.34 10.5 1.6 0.82 9.3 0.5 2.0 1 1 1 2 2 2 0 NACHT domain ABC2_membrane_3 PF12698.2 gi|397779372|ref|YP_006543845.1| - 3.4e-05 23.0 34.8 3.4e-05 23.0 24.1 3.2 2 2 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|397779373|ref|YP_006543846.1| - 8.8e-19 67.7 3.2 1.4e-18 67.0 2.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|397779373|ref|YP_006543846.1| - 1.4e-12 47.0 0.0 2.7e-12 46.1 0.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|397779373|ref|YP_006543846.1| - 1.2e-07 31.1 9.1 4.7e-07 29.2 6.3 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|397779373|ref|YP_006543846.1| - 0.0032 16.7 8.2 0.0032 16.7 5.7 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein Radical_SAM PF04055.16 gi|590000590|ref|YP_006543847.2| - 4.3e-29 101.8 0.1 1.2e-28 100.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|590000590|ref|YP_006543847.2| - 1.6e-09 37.6 2.4 1.6e-08 34.4 0.7 2.7 2 2 0 2 2 2 1 B12 binding domain DUF2225 PF09986.4 gi|397779375|ref|YP_006543848.1| - 0.00037 20.0 0.8 0.0033 16.9 0.5 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_19 PF14559.1 gi|397779375|ref|YP_006543848.1| - 0.00058 20.1 2.5 0.0011 19.2 1.7 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|397779375|ref|YP_006543848.1| - 0.0075 16.8 1.1 0.0075 16.8 0.8 3.3 1 1 2 3 3 3 1 Tetratricopeptide repeat zf-IS66 PF13005.2 gi|397779375|ref|YP_006543848.1| - 0.028 14.4 0.6 0.09 12.7 0.4 1.9 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 TPR_16 PF13432.1 gi|397779375|ref|YP_006543848.1| - 0.12 13.1 1.0 0.12 13.1 0.7 2.7 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF2795 PF11387.3 gi|397779376|ref|YP_006543849.1| - 1.5e-16 59.9 0.0 2.5e-16 59.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) PRC PF05239.11 gi|397779376|ref|YP_006543849.1| - 9.8e-15 54.1 0.2 1.5e-14 53.5 0.1 1.3 1 0 0 1 1 1 1 PRC-barrel domain Aft1_HRA PF11786.3 gi|397779376|ref|YP_006543849.1| - 0.11 12.8 0.1 0.22 11.7 0.1 1.6 1 1 0 1 1 1 0 Aft1 HRA domain DUF2795 PF11387.3 gi|397779377|ref|YP_006543850.1| - 6.5e-18 64.3 0.1 1.3e-17 63.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) PRC PF05239.11 gi|397779377|ref|YP_006543850.1| - 4.5e-10 39.2 0.1 7.3e-10 38.5 0.1 1.3 1 0 0 1 1 1 1 PRC-barrel domain Radical_SAM PF04055.16 gi|397779378|ref|YP_006543851.1| - 1.4e-08 35.1 0.0 2.3e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.2 gi|397779378|ref|YP_006543851.1| - 6.7e-08 32.3 0.0 2.7e-07 30.4 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|397779378|ref|YP_006543851.1| - 0.00025 21.1 0.2 0.048 13.8 0.0 2.0 2 1 1 3 3 3 2 Helix-hairpin-helix domain HHH PF00633.18 gi|397779378|ref|YP_006543851.1| - 0.00084 18.9 0.0 0.0034 17.0 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|397779378|ref|YP_006543851.1| - 0.031 14.3 0.0 0.19 11.7 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif Opiods_neuropep PF01160.13 gi|397779378|ref|YP_006543851.1| - 0.037 13.7 0.3 0.064 13.0 0.2 1.4 1 0 0 1 1 1 0 Vertebrate endogenous opioids neuropeptide Acetyltransf_10 PF13673.1 gi|397779379|ref|YP_006543852.1| - 3.1e-10 40.1 0.1 1.4e-09 38.0 0.0 2.1 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|397779379|ref|YP_006543852.1| - 2.2e-09 37.2 0.4 3.2e-08 33.4 0.2 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|397779379|ref|YP_006543852.1| - 1.4e-06 28.3 0.0 3.3e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|397779379|ref|YP_006543852.1| - 9.4e-06 25.4 0.0 1.9e-05 24.4 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|397779379|ref|YP_006543852.1| - 0.0012 18.4 0.0 0.0042 16.7 0.0 1.9 1 1 1 2 2 2 1 FR47-like protein DAO PF01266.19 gi|590000591|ref|YP_006543853.2| - 7.1e-14 51.4 0.2 2.2e-06 26.8 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|590000591|ref|YP_006543853.2| - 4.9e-13 48.8 2.6 1.8e-12 47.0 0.3 2.6 2 1 0 2 2 2 1 FAD binding domain Trp_halogenase PF04820.9 gi|590000591|ref|YP_006543853.2| - 9.6e-10 37.6 0.0 0.0002 20.1 0.0 2.6 2 1 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|590000591|ref|YP_006543853.2| - 5.5e-08 32.9 0.0 9.8e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|590000591|ref|YP_006543853.2| - 5.9e-07 29.4 0.3 2.5e-06 27.4 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|590000591|ref|YP_006543853.2| - 5.7e-06 25.6 0.0 8.5e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.19 gi|590000591|ref|YP_006543853.2| - 1.3e-05 24.2 0.1 2.8e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|590000591|ref|YP_006543853.2| - 1.7e-05 24.1 0.2 2.4e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|590000591|ref|YP_006543853.2| - 2.6e-05 22.8 0.0 6e-05 21.6 0.0 1.6 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|590000591|ref|YP_006543853.2| - 6.4e-05 21.9 0.0 9.8e-05 21.3 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|590000591|ref|YP_006543853.2| - 8.5e-05 22.8 0.0 0.007 16.7 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|590000591|ref|YP_006543853.2| - 0.0008 18.4 0.3 0.0057 15.6 0.1 2.3 2 1 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|590000591|ref|YP_006543853.2| - 0.0015 18.3 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|590000591|ref|YP_006543853.2| - 0.053 13.5 0.0 0.21 11.6 0.0 1.9 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|590000591|ref|YP_006543853.2| - 0.078 11.7 0.0 2.9 6.6 0.0 2.1 2 0 0 2 2 2 0 Squalene epoxidase DUF4091 PF13320.1 gi|590000592|ref|YP_009001387.1| - 0.028 14.3 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4091) CorA PF01544.13 gi|397779381|ref|YP_006543854.1| - 7e-59 199.2 7.2 9.1e-59 198.8 5.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF3792 PF12670.2 gi|397779381|ref|YP_006543854.1| - 0.016 15.0 0.6 0.026 14.3 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) DUF4231 PF14015.1 gi|397779381|ref|YP_006543854.1| - 0.23 11.4 1.3 0.44 10.5 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) CobN-Mg_chel PF02514.11 gi|397779382|ref|YP_006543855.1| - 0 1172.1 0.0 0 1165.6 0.0 2.0 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DEDD_Tnp_IS110 PF01548.12 gi|397779383|ref|YP_006543856.1| - 1.2e-31 109.3 0.0 1.9e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 Transposase Transposase_20 PF02371.11 gi|397779383|ref|YP_006543856.1| - 5.6e-24 84.0 0.0 1.3e-23 82.9 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family WI12 PF07107.6 gi|397779383|ref|YP_006543856.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Wound-induced protein WI12 DUF2149 PF09919.4 gi|397779384|ref|YP_006543857.1| - 9.7e-35 118.5 0.1 1.1e-34 118.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) BcrAD_BadFG PF01869.15 gi|397779384|ref|YP_006543857.1| - 0.043 13.1 0.0 0.053 12.8 0.0 1.1 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family MotA_ExbB PF01618.11 gi|397779385|ref|YP_006543858.1| - 2.3e-11 43.5 0.1 2.3e-11 43.5 0.1 1.5 2 0 0 2 2 2 1 MotA/TolQ/ExbB proton channel family VIT1 PF01988.14 gi|397779385|ref|YP_006543858.1| - 0.0028 17.1 2.8 0.11 12.0 0.1 2.2 2 0 0 2 2 2 2 VIT family DUF490 PF04357.8 gi|397779385|ref|YP_006543858.1| - 0.14 11.1 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF490) DUF1469 PF07332.6 gi|397779385|ref|YP_006543858.1| - 3.2 7.5 13.5 6 6.6 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF2162 PF09930.4 gi|397779386|ref|YP_006543859.1| - 5.1e-63 212.2 18.3 5.9e-63 212.0 12.7 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) DUF1035 PF06281.7 gi|397779386|ref|YP_006543859.1| - 0.0063 16.2 0.0 0.023 14.4 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1035) TAT_signal PF10518.4 gi|397779386|ref|YP_006543859.1| - 0.11 12.5 0.0 0.11 12.5 0.0 5.2 5 1 0 5 5 5 0 TAT (twin-arginine translocation) pathway signal sequence AzlD PF05437.7 gi|397779386|ref|YP_006543859.1| - 0.24 11.3 13.7 0.12 12.3 0.3 3.3 2 1 1 3 3 3 0 Branched-chain amino acid transport protein (AzlD) DUF3810 PF12725.2 gi|397779386|ref|YP_006543859.1| - 0.42 9.4 1.9 0.74 8.6 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) DUF3278 PF11683.3 gi|397779386|ref|YP_006543859.1| - 5.8 6.9 5.5 5.9 6.8 0.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3278) UPF0154 PF03672.8 gi|397779386|ref|YP_006543859.1| - 6.6 6.4 6.7 0.61 9.7 0.1 2.8 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0154) H_PPase PF03030.11 gi|397779387|ref|YP_006543860.1| - 3e-279 928.0 59.8 3.4e-279 927.8 41.4 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Metallophos_2 PF12850.2 gi|397779388|ref|YP_006543861.1| - 7.4e-13 48.6 0.0 2.6e-12 46.8 0.0 1.8 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain DNA_pol_E_B PF04042.11 gi|397779388|ref|YP_006543861.1| - 1.5e-12 47.1 0.0 2.6e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.23 gi|397779388|ref|YP_006543861.1| - 2.8e-09 36.6 0.3 6e-09 35.5 0.2 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|397779388|ref|YP_006543861.1| - 1.4e-06 28.0 0.0 3.3e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Peptidase_S24 PF00717.18 gi|397779389|ref|YP_006543862.1| - 0.01 15.4 0.1 0.022 14.4 0.1 1.6 1 0 0 1 1 1 0 Peptidase S24-like Radical_SAM PF04055.16 gi|397779390|ref|YP_006543863.1| - 1.4e-08 35.1 0.6 2.1e-08 34.4 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily PfkB PF00294.19 gi|397779390|ref|YP_006543863.1| - 0.015 14.4 0.0 0.062 12.4 0.0 1.8 2 0 0 2 2 2 0 pfkB family carbohydrate kinase DUF2757 PF10955.3 gi|397779390|ref|YP_006543863.1| - 0.13 12.4 0.0 0.44 10.7 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2757) DUF362 PF04015.7 gi|397779391|ref|YP_006543864.1| - 3.8e-46 157.1 0.0 4.8e-46 156.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) DUF204 PF02659.10 gi|397779392|ref|YP_006543865.1| - 3.7e-33 113.4 24.0 3.2e-17 62.3 5.6 2.3 2 0 0 2 2 2 2 Domain of unknown function DUF PAD_porph PF04371.10 gi|397779393|ref|YP_006543866.1| - 7.7e-112 373.5 0.0 1.1e-111 373.0 0.0 1.2 1 0 0 1 1 1 1 Porphyromonas-type peptidyl-arginine deiminase CN_hydrolase PF00795.17 gi|397779393|ref|YP_006543866.1| - 6.5e-33 113.6 0.0 1.1e-32 112.8 0.0 1.3 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Nitroreductase PF00881.19 gi|590000593|ref|YP_006543867.2| - 2.7e-31 108.6 0.0 3.3e-31 108.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family PAD_porph PF04371.10 gi|397779395|ref|YP_006543868.1| - 4e-09 35.9 0.0 4.6e-09 35.7 0.0 1.1 1 0 0 1 1 1 1 Porphyromonas-type peptidyl-arginine deiminase Nitroreductase PF00881.19 gi|397779398|ref|YP_006543871.1| - 5.1e-34 117.4 0.0 6e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family MFS_1 PF07690.11 gi|397779399|ref|YP_006543872.1| - 5e-24 84.6 55.8 6e-23 81.1 28.5 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|397779399|ref|YP_006543872.1| - 9.6e-08 31.7 3.2 0.00025 20.7 0.2 3.0 2 0 0 2 2 2 2 MFS_1 like family Cytochrome-c551 PF10643.4 gi|397779399|ref|YP_006543872.1| - 0.26 10.5 2.7 0.58 9.4 1.9 1.6 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 TPP_enzyme_C PF02775.16 gi|397779400|ref|YP_006543873.1| - 1.1e-32 112.6 0.0 1.6e-32 112.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|397779400|ref|YP_006543873.1| - 5.2e-08 32.6 0.7 1.1e-07 31.7 0.1 1.7 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal YTV PF07639.6 gi|397779400|ref|YP_006543873.1| - 0.033 13.8 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 YTV XFP_N PF09364.5 gi|397779400|ref|YP_006543873.1| - 0.13 10.7 0.1 0.21 10.0 0.1 1.3 1 0 0 1 1 1 0 XFP N-terminal domain POR_N PF01855.14 gi|590000594|ref|YP_006543874.2| - 9e-46 156.2 0.0 1.3e-45 155.6 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|590000594|ref|YP_006543874.2| - 4.1e-33 114.7 0.1 6.6e-33 114.0 0.0 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|590000594|ref|YP_006543874.2| - 4.2e-06 26.3 0.5 4.2e-06 26.3 0.3 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|590000594|ref|YP_006543874.2| - 7e-05 22.7 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain Epimerase PF01370.16 gi|397779403|ref|YP_006543876.1| - 4.3e-53 180.1 0.1 1.6e-52 178.3 0.1 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|397779403|ref|YP_006543876.1| - 6.3e-25 87.4 0.0 1.3e-22 79.8 0.0 2.1 2 0 0 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|397779403|ref|YP_006543876.1| - 3.8e-15 55.5 0.0 5.8e-14 51.6 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|397779403|ref|YP_006543876.1| - 6.3e-15 55.6 0.0 3.8e-14 53.1 0.0 2.1 2 1 1 3 3 3 1 NADH(P)-binding adh_short PF00106.20 gi|397779403|ref|YP_006543876.1| - 4.6e-14 52.6 0.0 8e-14 51.9 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|397779403|ref|YP_006543876.1| - 7.9e-10 38.1 0.0 4.2e-09 35.7 0.0 1.9 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein KR PF08659.5 gi|397779403|ref|YP_006543876.1| - 1.3e-09 37.9 0.0 2.1e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 KR domain RmlD_sub_bind PF04321.12 gi|397779403|ref|YP_006543876.1| - 4.7e-07 28.9 0.0 0.0013 17.6 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.8 gi|397779403|ref|YP_006543876.1| - 1.4e-05 24.4 0.0 2.4e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Epimerase_Csub PF13950.1 gi|397779403|ref|YP_006543876.1| - 0.0016 18.3 0.0 0.0056 16.6 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit Ldh_1_N PF00056.18 gi|397779403|ref|YP_006543876.1| - 0.078 12.7 0.1 0.3 10.9 0.0 1.9 2 1 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|397779403|ref|YP_006543876.1| - 0.088 12.8 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Glu_synthase PF01645.12 gi|397779404|ref|YP_006543877.1| - 2.1e-12 46.6 0.0 3e-10 39.5 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase Peripla_BP_3 PF13377.1 gi|397779404|ref|YP_006543877.1| - 0.049 13.6 0.0 1.6 8.7 0.0 2.4 2 0 0 2 2 2 0 Periplasmic binding protein-like domain RibD_C PF01872.12 gi|397779407|ref|YP_006543880.1| - 2.9e-55 186.9 0.1 3.3e-55 186.8 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain HATPase_c PF02518.21 gi|397779408|ref|YP_006543881.1| - 4.6e-26 90.7 0.0 8.2e-26 89.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|397779408|ref|YP_006543881.1| - 1e-15 57.9 0.0 3.8e-07 30.4 0.0 2.4 1 1 1 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|397779408|ref|YP_006543881.1| - 7.4e-13 48.4 0.0 1.1e-09 38.3 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|397779408|ref|YP_006543881.1| - 6.2e-09 35.6 0.0 0.0031 17.2 0.0 2.4 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|397779408|ref|YP_006543881.1| - 1.7e-08 34.2 0.0 7e-08 32.3 0.0 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|397779408|ref|YP_006543881.1| - 0.00011 21.8 0.0 0.00025 20.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|397779408|ref|YP_006543881.1| - 0.014 15.2 0.0 0.2 11.5 0.0 2.4 2 0 0 2 2 2 0 PAS domain Response_reg PF00072.19 gi|397779409|ref|YP_006543882.1| - 1.3e-16 60.5 0.1 1.6e-16 60.3 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.6 gi|397779409|ref|YP_006543882.1| - 3.9e-05 23.7 0.0 4.9e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Flagellar regulatory protein FleQ Glycos_transf_1 PF00534.15 gi|397779410|ref|YP_006543883.1| - 4.1e-24 84.9 0.0 6.1e-24 84.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397779410|ref|YP_006543883.1| - 4.7e-10 39.7 0.0 1.1e-09 38.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|397779410|ref|YP_006543883.1| - 2.1e-08 34.3 0.0 7e-08 32.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 HSP20 PF00011.16 gi|397779411|ref|YP_006543884.1| - 3.5e-08 33.2 0.0 4.3e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|397779411|ref|YP_006543884.1| - 0.011 15.3 0.2 0.42 10.2 0.2 2.1 2 0 0 2 2 2 0 GvpH Rubrerythrin PF02915.12 gi|397779412|ref|YP_006543885.1| - 0.025 14.8 1.0 4.2 7.6 0.1 3.3 3 0 0 3 3 3 0 Rubrerythrin Fer4 PF00037.22 gi|397779413|ref|YP_006543886.1| - 2.3e-18 64.9 18.0 1.8e-09 36.8 3.8 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397779413|ref|YP_006543886.1| - 3e-16 58.4 15.8 2.1e-08 33.6 3.4 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397779413|ref|YP_006543886.1| - 9.1e-14 51.0 12.1 1e-13 50.8 8.4 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397779413|ref|YP_006543886.1| - 1.3e-12 47.8 12.5 1.7e-12 47.5 8.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397779413|ref|YP_006543886.1| - 1.5e-11 44.3 11.8 1.8e-11 44.1 8.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397779413|ref|YP_006543886.1| - 1.8e-11 43.2 17.4 3.5e-06 26.6 3.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|397779413|ref|YP_006543886.1| - 1.5e-10 41.6 10.4 2.9e-05 24.7 1.2 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|397779413|ref|YP_006543886.1| - 3.5e-09 36.2 13.4 4.7e-05 23.3 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|397779413|ref|YP_006543886.1| - 1.7e-08 34.1 11.6 6e-05 22.8 2.6 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|397779413|ref|YP_006543886.1| - 8.1e-07 28.9 13.5 4.5e-06 26.5 9.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397779413|ref|YP_006543886.1| - 2e-06 28.0 20.4 0.00093 19.4 0.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397779413|ref|YP_006543886.1| - 1.5e-05 25.3 17.4 0.0036 17.7 2.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397779413|ref|YP_006543886.1| - 2e-05 25.0 15.7 0.007 16.9 10.9 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|397779413|ref|YP_006543886.1| - 0.00015 22.0 21.3 0.019 15.4 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|397779413|ref|YP_006543886.1| - 0.00017 21.4 5.5 0.0002 21.1 3.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|397779413|ref|YP_006543886.1| - 0.0008 19.7 16.5 0.016 15.5 3.0 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|397779413|ref|YP_006543886.1| - 0.014 15.1 10.3 0.046 13.5 7.1 2.5 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster PRAI PF00697.17 gi|590000596|ref|YP_006543887.2| - 3.1e-24 85.6 0.0 3.5e-24 85.4 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.12 gi|590000596|ref|YP_006543887.2| - 0.02 14.0 0.1 0.03 13.4 0.1 1.5 1 1 0 1 1 1 0 Thiamine monophosphate synthase/TENI DHHA1 PF02272.14 gi|397779415|ref|YP_006543888.1| - 8.2e-08 31.8 0.1 4.1e-07 29.6 0.0 2.0 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.15 gi|397779415|ref|YP_006543888.1| - 0.061 12.9 0.0 0.19 11.3 0.0 1.7 1 1 0 1 1 1 0 DHH family tRNA-synt_1g PF09334.6 gi|397779417|ref|YP_006543890.1| - 4.3e-141 470.1 0.0 5.2e-141 469.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|397779417|ref|YP_006543890.1| - 5.9e-27 93.3 0.0 1.1e-26 92.5 0.0 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|397779417|ref|YP_006543890.1| - 1.1e-17 63.3 0.0 1.4e-08 33.2 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|397779417|ref|YP_006543890.1| - 1.3e-12 47.5 0.0 1.2e-08 34.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|397779417|ref|YP_006543890.1| - 5.6e-11 42.4 0.1 9.6e-11 41.6 0.1 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|397779417|ref|YP_006543890.1| - 0.0012 17.5 0.0 0.96 8.0 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|397779417|ref|YP_006543890.1| - 0.019 13.7 0.1 3.6 6.3 0.0 2.4 1 1 1 2 2 2 0 tRNA synthetases class I (R) DZR PF12773.2 gi|397779417|ref|YP_006543890.1| - 0.17 11.7 8.1 1 9.2 5.6 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|397779417|ref|YP_006543890.1| - 0.55 9.5 9.2 1.2 8.4 2.7 2.9 1 1 1 2 2 2 0 zinc-ribbon domain DUF473 PF04322.7 gi|397779420|ref|YP_006543893.1| - 8.5e-40 135.1 0.0 9.8e-40 134.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.4 gi|397779421|ref|YP_006543894.1| - 7.9e-46 156.6 0.1 8.8e-46 156.5 0.1 1.0 1 0 0 1 1 1 1 PAC2 family tRNA-synt_1 PF00133.17 gi|397779423|ref|YP_006543896.1| - 1.1e-52 178.8 0.0 4.3e-46 157.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|397779423|ref|YP_006543896.1| - 1.3e-22 80.0 2.3 7e-10 38.1 0.1 4.1 4 0 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|397779423|ref|YP_006543896.1| - 8.8e-20 71.0 0.0 1.8e-19 70.0 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|397779423|ref|YP_006543896.1| - 1.4e-07 31.0 0.0 2.7e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|397779423|ref|YP_006543896.1| - 1.3e-06 27.7 0.0 0.02 13.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|397779423|ref|YP_006543896.1| - 0.0005 18.8 0.0 0.056 12.1 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|397779423|ref|YP_006543896.1| - 0.00097 18.0 0.0 0.014 14.1 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1b PF00579.20 gi|397779423|ref|YP_006543896.1| - 0.27 10.3 0.0 0.77 8.8 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) T2SE PF00437.15 gi|397779424|ref|YP_006543897.1| - 2.8e-13 49.4 0.1 5.2e-13 48.5 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|397779424|ref|YP_006543897.1| - 3.7e-06 26.4 1.0 1.1e-05 24.9 0.7 1.9 1 0 0 1 1 1 1 KH domain AAA_14 PF13173.1 gi|397779424|ref|YP_006543897.1| - 3e-05 23.9 0.0 6.3e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|397779424|ref|YP_006543897.1| - 5e-05 24.1 0.0 0.00015 22.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|397779424|ref|YP_006543897.1| - 9.7e-05 22.4 0.0 0.00029 20.8 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|397779424|ref|YP_006543897.1| - 0.0001 21.7 0.1 0.00026 20.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain KH_2 PF07650.12 gi|397779424|ref|YP_006543897.1| - 0.00011 21.7 3.9 0.0011 18.5 0.6 2.7 2 0 0 2 2 2 1 KH domain AAA_19 PF13245.1 gi|397779424|ref|YP_006543897.1| - 0.00047 19.8 0.0 0.001 18.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|397779424|ref|YP_006543897.1| - 0.0005 19.5 0.0 0.00086 18.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|397779424|ref|YP_006543897.1| - 0.00053 19.7 0.0 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|397779424|ref|YP_006543897.1| - 0.00055 20.2 0.0 0.0015 18.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|397779424|ref|YP_006543897.1| - 0.00055 20.1 0.0 0.0011 19.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|397779424|ref|YP_006543897.1| - 0.00062 19.6 0.0 0.0014 18.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|397779424|ref|YP_006543897.1| - 0.00078 18.5 0.0 0.0016 17.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin NACHT PF05729.7 gi|397779424|ref|YP_006543897.1| - 0.0014 18.2 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain PIN_4 PF13638.1 gi|397779424|ref|YP_006543897.1| - 0.0023 18.0 0.0 0.0044 17.1 0.0 1.4 1 0 0 1 1 1 1 PIN domain Mg_chelatase PF01078.16 gi|397779424|ref|YP_006543897.1| - 0.0026 16.9 0.0 0.0046 16.1 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|397779424|ref|YP_006543897.1| - 0.0033 17.5 0.0 0.0089 16.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|397779424|ref|YP_006543897.1| - 0.0035 17.0 0.0 0.013 15.1 0.0 2.0 2 0 0 2 2 2 1 NTPase Viral_helicase1 PF01443.13 gi|397779424|ref|YP_006543897.1| - 0.0042 16.6 0.0 0.0074 15.8 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_28 PF13521.1 gi|397779424|ref|YP_006543897.1| - 0.0057 16.6 0.1 0.017 15.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|397779424|ref|YP_006543897.1| - 0.0067 16.0 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|397779424|ref|YP_006543897.1| - 0.012 14.3 0.0 0.034 12.8 0.0 1.7 1 0 0 1 1 1 0 TIP49 C-terminus RuvB_N PF05496.7 gi|397779424|ref|YP_006543897.1| - 0.013 14.5 0.0 0.027 13.5 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus KH_5 PF13184.1 gi|397779424|ref|YP_006543897.1| - 0.016 14.9 0.4 0.04 13.7 0.3 1.7 1 0 0 1 1 1 0 NusA-like KH domain AAA_30 PF13604.1 gi|397779424|ref|YP_006543897.1| - 0.017 14.7 0.0 0.044 13.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|397779424|ref|YP_006543897.1| - 0.021 14.9 0.0 0.051 13.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.1 gi|397779424|ref|YP_006543897.1| - 0.026 14.0 0.0 0.057 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_11 PF13086.1 gi|397779424|ref|YP_006543897.1| - 0.034 13.7 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|397779424|ref|YP_006543897.1| - 0.047 13.0 0.0 0.092 12.1 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase ABC_tran PF00005.22 gi|397779424|ref|YP_006543897.1| - 0.066 13.5 0.0 0.17 12.2 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_10 PF12846.2 gi|397779424|ref|YP_006543897.1| - 0.076 12.4 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain KTI12 PF08433.5 gi|397779424|ref|YP_006543897.1| - 0.096 11.8 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ATP_bind_1 PF03029.12 gi|397779424|ref|YP_006543897.1| - 0.12 11.8 0.0 0.31 10.5 0.0 1.6 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|397779424|ref|YP_006543897.1| - 0.12 12.0 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Parvo_NS1 PF01057.12 gi|397779424|ref|YP_006543897.1| - 0.14 10.9 0.0 0.26 10.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.1 gi|397779424|ref|YP_006543897.1| - 0.18 11.8 0.0 0.5 10.4 0.0 1.7 2 0 0 2 2 1 0 Sigma-54 interaction domain Rad17 PF03215.10 gi|397779424|ref|YP_006543897.1| - 0.27 9.8 0.0 0.37 9.4 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein PRA-CH PF01502.13 gi|397779425|ref|YP_006543898.1| - 1.3e-36 124.0 1.0 1.6e-36 123.7 0.7 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Arc_PepC_II PF06847.6 gi|397779427|ref|YP_006543899.1| - 2e-21 76.1 0.0 3.9e-19 68.8 0.0 2.5 1 1 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|397779427|ref|YP_006543899.1| - 7.8e-07 29.2 8.7 7.8e-07 29.2 6.1 2.0 2 0 0 2 2 2 1 Type IV leader peptidase family CarboxypepD_reg PF13620.1 gi|590000597|ref|YP_006543900.2| - 0.0053 16.7 0.0 0.015 15.3 0.0 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain PapC_C PF13953.1 gi|590000597|ref|YP_006543900.2| - 0.04 13.5 0.0 0.066 12.8 0.0 1.4 1 0 0 1 1 1 0 PapC C-terminal domain T2SE PF00437.15 gi|397779428|ref|YP_006543901.1| - 1.4e-49 168.4 0.0 2.2e-49 167.7 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|397779428|ref|YP_006543901.1| - 0.0013 18.1 0.1 0.0032 16.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain EF-hand_6 PF13405.1 gi|397779428|ref|YP_006543901.1| - 0.17 11.8 0.1 2.5 8.2 0.0 2.8 2 0 0 2 2 2 0 EF-hand domain AAA_23 PF13476.1 gi|397779428|ref|YP_006543901.1| - 0.55 10.5 2.2 0.42 10.8 0.2 1.8 2 0 0 2 2 2 0 AAA domain T2SF PF00482.18 gi|397779429|ref|YP_006543902.1| - 7.8e-13 48.4 0.4 7.8e-13 48.4 0.3 3.2 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F PEPcase_2 PF14010.1 gi|397779429|ref|YP_006543902.1| - 0.0013 17.1 0.0 0.0014 17.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PRA1 PF03208.14 gi|397779429|ref|YP_006543902.1| - 0.49 9.7 13.8 0.054 12.8 2.3 2.6 2 1 0 2 2 2 0 PRA1 family protein DUF2207 PF09972.4 gi|397779429|ref|YP_006543902.1| - 0.52 8.8 6.6 0.54 8.7 0.6 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) FtsX PF02687.16 gi|397779429|ref|YP_006543902.1| - 6.2 6.6 18.5 3.6 7.3 1.3 2.4 2 0 0 2 2 2 0 FtsX-like permease family T2SF PF00482.18 gi|397779430|ref|YP_006543903.1| - 1.9e-19 69.8 0.9 6.7e-19 68.0 0.0 2.4 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F GATase_3 PF07685.9 gi|590000598|ref|YP_006543904.2| - 1.6e-40 138.2 0.0 2.7e-40 137.5 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|590000598|ref|YP_006543904.2| - 1.1e-26 93.4 0.0 1.5e-26 93.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|590000598|ref|YP_006543904.2| - 3.6e-22 78.9 0.0 9.1e-22 77.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain GATase PF00117.23 gi|590000598|ref|YP_006543904.2| - 0.00086 18.8 0.0 0.0017 17.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|590000598|ref|YP_006543904.2| - 0.0033 16.8 0.0 0.0058 16.1 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family MobB PF03205.9 gi|590000598|ref|YP_006543904.2| - 0.0044 16.7 0.0 0.14 11.8 0.0 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF1611 PF07755.6 gi|590000598|ref|YP_006543904.2| - 0.021 13.4 0.0 0.037 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1611) Peptidase_S51 PF03575.12 gi|590000598|ref|YP_006543904.2| - 0.067 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 Glyco_hydro_42M PF08532.5 gi|590000598|ref|YP_006543904.2| - 0.1 11.7 0.0 0.33 10.0 0.0 1.9 1 0 0 1 1 1 0 Beta-galactosidase trimerisation domain Peptidase_C26 PF07722.8 gi|590000598|ref|YP_006543904.2| - 0.13 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Peptidase C26 Ribonuc_red_lgC PF02867.10 gi|397779431|ref|YP_006543905.1| - 4.9e-136 454.4 0.0 7.9e-100 334.9 0.0 2.5 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|397779431|ref|YP_006543905.1| - 3.3e-13 49.2 0.0 6e-13 48.3 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain SUI1 PF01253.17 gi|397779433|ref|YP_006543906.1| - 1.5e-24 85.5 0.2 1.7e-24 85.4 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.10 gi|397779433|ref|YP_006543906.1| - 0.047 12.8 0.7 0.064 12.4 0.5 1.2 1 0 0 1 1 1 0 DTW domain Img2 PF05046.9 gi|397779433|ref|YP_006543906.1| - 0.1 12.8 0.1 0.16 12.1 0.1 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) AKNA PF12443.3 gi|397779434|ref|YP_006543907.1| - 0.036 14.0 0.2 0.049 13.6 0.1 1.3 1 0 0 1 1 1 0 AT-hook-containing transcription factor DUF4140 PF13600.1 gi|397779434|ref|YP_006543907.1| - 0.076 13.4 0.2 0.1 13.0 0.2 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) COMP PF11598.3 gi|397779434|ref|YP_006543907.1| - 0.089 12.8 0.8 0.18 11.8 0.6 1.6 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein Syntaxin-6_N PF09177.6 gi|397779434|ref|YP_006543907.1| - 0.1 13.0 0.2 0.12 12.7 0.2 1.2 1 0 0 1 1 1 0 Syntaxin 6, N-terminal Elf1 PF05129.8 gi|397779435|ref|YP_006543908.1| - 0.028 14.1 0.7 0.036 13.7 0.5 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Stress-antifung PF01657.12 gi|397779435|ref|YP_006543908.1| - 0.079 13.3 2.5 0.15 12.4 1.4 1.6 1 1 1 2 2 2 0 Salt stress response/antifungal CxxCxxCC PF03692.10 gi|397779436|ref|YP_006543909.1| - 1.8e-06 28.2 7.5 4.7e-06 26.9 5.3 1.7 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain NotI PF12183.3 gi|397779436|ref|YP_006543909.1| - 0.0011 18.1 0.2 0.0014 17.8 0.1 1.2 1 0 0 1 1 1 1 Restriction endonuclease NotI Voltage_CLC PF00654.15 gi|397779437|ref|YP_006543910.1| - 1e-48 166.2 33.6 1.2e-48 165.9 23.3 1.1 1 0 0 1 1 1 1 Voltage gated chloride channel CBS PF00571.23 gi|397779437|ref|YP_006543910.1| - 5.5e-23 80.4 7.8 1.1e-11 44.3 0.4 2.4 2 0 0 2 2 2 2 CBS domain Fumarate_red_C PF02300.12 gi|397779437|ref|YP_006543910.1| - 5.1 6.9 6.3 4.9 7.0 0.5 2.4 2 0 0 2 2 2 0 Fumarate reductase subunit C Voltage_CLC PF00654.15 gi|397779438|ref|YP_006543911.1| - 0.00018 20.6 0.1 0.017 14.1 0.0 2.1 2 0 0 2 2 2 2 Voltage gated chloride channel EamA PF00892.15 gi|397779438|ref|YP_006543911.1| - 0.036 14.1 0.3 0.22 11.5 0.1 1.9 2 0 0 2 2 2 0 EamA-like transporter family TauE PF01925.14 gi|397779438|ref|YP_006543911.1| - 0.078 12.4 2.3 0.11 11.9 1.6 1.2 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE DUF2592 PF10766.4 gi|397779438|ref|YP_006543911.1| - 0.12 11.6 3.4 0.24 10.7 2.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2592) Yip1 PF04893.12 gi|397779438|ref|YP_006543911.1| - 0.14 11.6 5.1 0.94 8.9 0.1 2.0 1 1 1 2 2 2 0 Yip1 domain NTP_transferase PF00483.18 gi|397779440|ref|YP_006543913.1| - 1.1e-49 169.0 0.0 1.4e-49 168.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|397779440|ref|YP_006543913.1| - 1.4e-17 62.3 27.2 7e-07 28.4 2.6 5.6 1 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|397779440|ref|YP_006543913.1| - 1.6e-12 47.8 0.0 2.2e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|397779440|ref|YP_006543913.1| - 1.3e-05 24.6 13.5 0.00014 21.3 1.0 4.1 4 1 1 5 5 5 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|397779440|ref|YP_006543913.1| - 0.68 8.4 5.3 1.3 7.5 0.5 2.2 1 1 1 2 2 2 0 L-fucokinase CBS PF00571.23 gi|397779441|ref|YP_006543914.1| - 1e-30 105.2 2.9 1e-14 53.9 0.1 2.5 2 0 0 2 2 2 2 CBS domain ParBc PF02195.13 gi|397779441|ref|YP_006543914.1| - 1.5e-13 50.6 0.4 7.4e-13 48.4 0.1 2.2 2 1 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|397779441|ref|YP_006543914.1| - 0.0057 16.4 0.0 0.044 13.6 0.0 2.2 1 1 0 1 1 1 1 Putative ParB-like nuclease HSP20 PF00011.16 gi|397779442|ref|YP_006543915.1| - 4.6e-15 55.3 0.1 5.5e-15 55.0 0.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|397779442|ref|YP_006543915.1| - 0.0004 20.0 2.9 0.0048 16.5 2.0 2.1 1 1 0 1 1 1 1 GvpH CS PF04969.11 gi|397779442|ref|YP_006543915.1| - 0.019 15.4 0.0 0.071 13.6 0.0 1.8 1 1 0 1 1 1 0 CS domain ESSS PF10183.4 gi|397779443|ref|YP_006543916.1| - 0.078 13.3 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) Lactamase_B PF00753.22 gi|397779444|ref|YP_006543917.1| - 8.8e-11 41.8 2.7 2e-09 37.4 1.8 3.0 2 2 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|397779444|ref|YP_006543917.1| - 0.00026 20.6 0.2 0.00051 19.6 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|397779444|ref|YP_006543917.1| - 0.47 9.3 0.8 0.74 8.6 0.5 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II STAS PF01740.16 gi|397779445|ref|YP_006543918.1| - 4.9e-16 58.2 0.0 7.4e-16 57.6 0.0 1.3 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.1 gi|397779445|ref|YP_006543918.1| - 1.6e-11 44.0 0.2 5.1e-11 42.4 0.0 1.9 2 0 0 2 2 2 1 STAS domain HATPase_c_2 PF13581.1 gi|397779446|ref|YP_006543919.1| - 1.8e-29 102.0 0.0 2e-29 101.9 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.21 gi|397779446|ref|YP_006543919.1| - 1.3e-07 31.3 0.0 1.6e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SpoIIE PF07228.7 gi|397779447|ref|YP_006543920.1| - 1.6e-50 171.4 0.3 2.5e-50 170.8 0.2 1.2 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) 5TM-5TMR_LYT PF07694.7 gi|397779447|ref|YP_006543920.1| - 6.2e-48 162.3 16.7 6.2e-48 162.3 11.6 1.5 2 0 0 2 2 2 1 5TMR of 5TMR-LYT DUF3816 PF12822.2 gi|397779447|ref|YP_006543920.1| - 4.3 7.1 18.7 1.7 8.5 11.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) ECF-ribofla_trS PF07155.7 gi|397779447|ref|YP_006543920.1| - 4.7 6.9 18.2 0.49 10.1 9.2 1.9 2 0 0 2 2 2 0 ECF-type riboflavin transporter, S component Tim17 PF02466.14 gi|397779447|ref|YP_006543920.1| - 7.8 6.5 9.7 23 5.0 6.2 2.1 1 1 1 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family STAS PF01740.16 gi|397779448|ref|YP_006543921.1| - 6.3e-17 61.0 0.0 7.2e-17 60.8 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.1 gi|397779448|ref|YP_006543921.1| - 1.2e-13 50.9 0.0 1.5e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 STAS domain Thioredoxin PF00085.15 gi|397779449|ref|YP_006543922.1| - 2.5e-08 33.5 0.0 3.2e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|397779449|ref|YP_006543922.1| - 2.6e-08 33.5 0.2 3.2e-08 33.2 0.2 1.2 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.9 gi|397779449|ref|YP_006543922.1| - 7.2e-07 29.3 0.1 9.6e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) KaiB PF07689.7 gi|397779449|ref|YP_006543922.1| - 0.0001 21.6 0.1 0.00016 21.0 0.0 1.3 1 0 0 1 1 1 1 KaiB domain Thioredoxin_2 PF13098.1 gi|397779449|ref|YP_006543922.1| - 0.00033 20.8 0.1 0.0065 16.6 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.1 gi|397779449|ref|YP_006543922.1| - 0.0023 17.4 0.0 0.0032 17.0 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein DUF2387 PF09526.5 gi|397779450|ref|YP_006543923.1| - 0.011 15.6 4.4 0.02 14.7 3.1 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Ribosomal_S27e PF01667.12 gi|397779450|ref|YP_006543923.1| - 0.024 14.1 1.9 0.044 13.3 1.3 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 AbbA_antirepres PF14156.1 gi|397779450|ref|YP_006543923.1| - 0.068 12.8 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Antirepressor AbbA Zn_Tnp_IS1595 PF12760.2 gi|397779450|ref|YP_006543923.1| - 0.12 12.1 1.9 0.25 11.1 1.3 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-DNL PF05180.7 gi|397779450|ref|YP_006543923.1| - 0.18 11.5 2.3 0.34 10.6 1.6 1.4 1 0 0 1 1 1 0 DNL zinc finger Zn-ribbon_8 PF09723.5 gi|397779450|ref|YP_006543923.1| - 0.25 11.3 4.5 0.74 9.8 3.1 1.8 1 0 0 1 1 1 0 Zinc ribbon domain DUF164 PF02591.10 gi|397779450|ref|YP_006543923.1| - 0.43 10.4 4.1 0.95 9.3 2.9 1.6 1 0 0 1 1 1 0 Putative zinc ribbon domain zf-ribbon_3 PF13248.1 gi|397779450|ref|YP_006543923.1| - 0.68 9.2 3.3 12 5.2 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|397779450|ref|YP_006543923.1| - 1.1 8.8 6.0 2.8 7.5 0.3 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|397779450|ref|YP_006543923.1| - 3.6 7.2 6.9 52 3.5 4.8 2.4 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|397779450|ref|YP_006543923.1| - 6.7 6.4 7.0 95 2.8 4.9 2.4 1 1 0 1 1 1 0 zinc-ribbon domain DUF371 PF04027.8 gi|397779451|ref|YP_006543924.1| - 4.3e-45 152.5 0.0 4.9e-45 152.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Exonuc_VII_S PF02609.11 gi|397779452|ref|YP_006543925.1| - 1.4e-18 66.3 3.9 1.5e-18 66.2 2.7 1.0 1 0 0 1 1 1 1 Exonuclease VII small subunit Exonuc_VII_L PF02601.10 gi|397779453|ref|YP_006543926.1| - 4.8e-77 259.2 0.0 1.4e-70 238.0 0.0 2.0 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|397779453|ref|YP_006543926.1| - 1.2e-25 89.2 0.0 2.1e-25 88.4 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|397779453|ref|YP_006543926.1| - 0.0009 19.0 0.0 0.0018 18.0 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain AP_endonuc_2 PF01261.19 gi|397779454|ref|YP_006543927.1| - 1.2e-21 77.0 0.4 1.6e-21 76.6 0.3 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PdxJ PF03740.8 gi|397779454|ref|YP_006543927.1| - 0.017 14.3 0.1 0.025 13.7 0.1 1.2 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthesis protein PdxJ DUF21 PF01595.15 gi|397779455|ref|YP_006543928.1| - 6e-52 175.6 2.7 7.9e-52 175.1 1.9 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|397779455|ref|YP_006543928.1| - 5.5e-23 80.5 2.2 8e-23 80.0 0.1 2.2 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|397779455|ref|YP_006543928.1| - 2.8e-20 71.7 0.7 1.6e-10 40.5 0.1 2.6 2 0 0 2 2 2 2 CBS domain RNase_E_G PF10150.4 gi|397779455|ref|YP_006543928.1| - 0.018 14.2 0.1 0.037 13.2 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease E/G family Formyl_trans_N PF00551.14 gi|397779456|ref|YP_006543929.1| - 1.7e-55 187.3 0.0 2e-55 187.1 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase Peripla_BP_4 PF13407.1 gi|397779456|ref|YP_006543929.1| - 0.0084 15.4 0.3 0.012 14.9 0.2 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain Rpr2 PF04032.11 gi|397779457|ref|YP_006543930.1| - 8.4e-20 70.4 0.2 1e-19 70.1 0.1 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-ribbon_3 PF13248.1 gi|397779457|ref|YP_006543930.1| - 0.04 13.1 0.7 3.7 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|397779457|ref|YP_006543930.1| - 0.053 13.0 2.3 0.17 11.4 1.6 1.8 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger DNA_RNApol_7kD PF03604.8 gi|397779457|ref|YP_006543930.1| - 0.74 9.3 4.6 5 6.6 3.2 2.3 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit CRS1_YhbY PF01985.16 gi|397779458|ref|YP_006543931.1| - 2.5e-14 53.0 0.0 3.4e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_S19e PF01090.14 gi|397779459|ref|YP_006543932.1| - 2.2e-58 195.6 0.0 2.5e-58 195.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_45 PF14947.1 gi|397779459|ref|YP_006543932.1| - 0.065 13.0 0.0 0.12 12.1 0.0 1.4 2 0 0 2 2 2 0 Winged helix-turn-helix dsDNA_bind PF01984.15 gi|397779460|ref|YP_006543933.1| - 1.4e-29 102.2 16.3 1.6e-29 102.0 11.3 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF2336 PF10098.4 gi|397779460|ref|YP_006543933.1| - 0.00065 19.0 6.5 0.00075 18.8 4.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2336) DLD PF14878.1 gi|397779460|ref|YP_006543933.1| - 0.074 13.1 0.8 0.14 12.3 0.5 1.5 1 1 0 1 1 1 0 Death-like domain of SPT6 CemA PF03040.9 gi|397779460|ref|YP_006543933.1| - 0.11 12.0 0.3 0.12 11.9 0.2 1.0 1 0 0 1 1 1 0 CemA family Asn_synthase PF00733.16 gi|397779461|ref|YP_006543934.1| - 0.00031 20.3 0.0 0.00038 20.0 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_4 PF01902.12 gi|397779461|ref|YP_006543934.1| - 0.0043 16.4 0.0 0.0064 15.8 0.0 1.4 1 1 0 1 1 1 1 ATP-binding region DNA_photolyase PF00875.13 gi|397779461|ref|YP_006543934.1| - 0.017 14.9 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase ThiI PF02568.9 gi|397779461|ref|YP_006543934.1| - 0.021 14.3 0.0 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|397779461|ref|YP_006543934.1| - 0.094 11.9 0.0 0.18 11.0 0.0 1.5 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Ribosomal_L39 PF00832.15 gi|397779462|ref|YP_006543935.1| - 1.6e-21 75.4 9.8 1.8e-21 75.2 6.8 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|397779463|ref|YP_006543936.1| - 2.3e-28 97.6 0.9 2.7e-28 97.4 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.13 gi|397779464|ref|YP_006543937.1| - 4.6e-67 224.9 1.1 5.3e-67 224.7 0.8 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18ae PF01775.12 gi|397779465|ref|YP_006543938.1| - 1.6e-09 37.6 0.1 2e-09 37.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Prefoldin PF02996.12 gi|397779466|ref|YP_006543939.1| - 6.2e-22 77.5 0.6 7.7e-22 77.1 0.4 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|397779466|ref|YP_006543939.1| - 0.0011 18.7 2.4 0.41 10.4 0.2 2.2 2 0 0 2 2 2 2 Prefoldin subunit Matrilin_ccoil PF10393.4 gi|397779466|ref|YP_006543939.1| - 0.034 13.5 1.4 0.49 9.7 0.0 2.6 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Spc7 PF08317.6 gi|397779466|ref|YP_006543939.1| - 0.11 11.0 3.6 1.2 7.7 0.6 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein SRP54 PF00448.17 gi|397779467|ref|YP_006543940.1| - 1.6e-66 223.4 0.2 2.1e-66 223.1 0.1 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|397779467|ref|YP_006543940.1| - 1.6e-10 40.9 4.7 2.5e-10 40.2 1.3 2.3 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|397779467|ref|YP_006543940.1| - 5.6e-05 22.3 0.1 8.7e-05 21.7 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin APS_kinase PF01583.15 gi|397779467|ref|YP_006543940.1| - 0.00016 21.4 0.0 0.00027 20.6 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.1 gi|397779467|ref|YP_006543940.1| - 0.0002 21.4 0.0 0.00049 20.1 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|397779467|ref|YP_006543940.1| - 0.00028 20.7 0.1 0.00053 19.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|397779467|ref|YP_006543940.1| - 0.00039 19.9 0.1 0.00064 19.2 0.1 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|397779467|ref|YP_006543940.1| - 0.0005 19.7 0.9 0.0018 17.9 0.6 1.9 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|397779467|ref|YP_006543940.1| - 0.0022 17.7 1.1 0.0048 16.6 0.8 1.6 1 1 0 1 1 1 1 NTPase AAA_19 PF13245.1 gi|397779467|ref|YP_006543940.1| - 0.0026 17.4 1.0 0.0096 15.6 0.7 2.1 1 1 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|397779467|ref|YP_006543940.1| - 0.0033 17.5 0.2 0.011 15.9 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|397779467|ref|YP_006543940.1| - 0.0041 17.3 0.1 0.012 15.8 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|397779467|ref|YP_006543940.1| - 0.0044 15.8 0.5 0.0083 14.9 0.4 1.6 1 1 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|397779467|ref|YP_006543940.1| - 0.005 16.5 2.0 0.0073 16.0 0.3 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|397779467|ref|YP_006543940.1| - 0.0059 16.5 1.1 0.039 13.9 0.7 2.1 1 1 0 1 1 1 1 AAA domain DAP3 PF10236.4 gi|397779467|ref|YP_006543940.1| - 0.0067 15.4 0.0 0.015 14.2 0.0 1.4 1 0 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 CbiA PF01656.18 gi|397779467|ref|YP_006543940.1| - 0.0092 15.4 1.7 0.065 12.6 1.1 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.12 gi|397779467|ref|YP_006543940.1| - 0.011 15.0 0.2 0.062 12.6 0.1 2.1 2 0 0 2 2 2 0 Thymidylate kinase AAA_17 PF13207.1 gi|397779467|ref|YP_006543940.1| - 0.019 15.8 0.8 0.031 15.0 0.1 1.9 2 1 0 2 2 1 0 AAA domain DUF2075 PF09848.4 gi|397779467|ref|YP_006543940.1| - 0.022 13.7 0.1 0.03 13.2 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Methyltransf_31 PF13847.1 gi|397779467|ref|YP_006543940.1| - 0.025 14.1 0.1 0.067 12.7 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Fe-ADH PF00465.14 gi|397779467|ref|YP_006543940.1| - 0.058 12.0 0.2 0.14 10.7 0.1 1.7 1 1 1 2 2 2 0 Iron-containing alcohol dehydrogenase PIF1 PF05970.9 gi|397779467|ref|YP_006543940.1| - 0.076 11.9 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase T2SE PF00437.15 gi|397779467|ref|YP_006543940.1| - 0.085 11.7 0.0 0.15 10.8 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein KTI12 PF08433.5 gi|397779467|ref|YP_006543940.1| - 0.14 11.3 0.0 0.33 10.1 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 SRP54 PF00448.17 gi|397779468|ref|YP_006543941.1| - 2.2e-67 226.3 0.0 3.6e-67 225.6 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|397779468|ref|YP_006543941.1| - 2.2e-30 104.9 0.1 7.4e-30 103.2 0.1 2.0 1 0 0 1 1 1 1 Signal peptide binding domain SRP54_N PF02881.14 gi|397779468|ref|YP_006543941.1| - 5e-16 58.5 0.3 1.5e-15 57.0 0.2 1.9 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|397779468|ref|YP_006543941.1| - 6.7e-07 28.8 1.1 5.1e-06 26.0 0.3 2.5 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|397779468|ref|YP_006543941.1| - 0.00035 20.3 0.1 0.001 18.8 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|397779468|ref|YP_006543941.1| - 0.00036 20.0 0.2 0.0032 16.9 0.1 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|397779468|ref|YP_006543941.1| - 0.00042 19.4 0.0 0.0013 17.8 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin ArgK PF03308.11 gi|397779468|ref|YP_006543941.1| - 0.0006 18.6 0.3 0.0013 17.6 0.0 1.6 2 0 0 2 2 2 1 ArgK protein APS_kinase PF01583.15 gi|397779468|ref|YP_006543941.1| - 0.0015 18.2 0.2 0.0034 17.0 0.0 1.7 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_16 PF13191.1 gi|397779468|ref|YP_006543941.1| - 0.0015 18.5 0.9 0.0083 16.1 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|397779468|ref|YP_006543941.1| - 0.0018 19.1 0.0 0.0049 17.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|397779468|ref|YP_006543941.1| - 0.004 17.2 0.2 0.028 14.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|397779468|ref|YP_006543941.1| - 0.0087 15.9 0.0 0.019 14.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|397779468|ref|YP_006543941.1| - 0.015 14.8 0.1 0.18 11.3 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein KTI12 PF08433.5 gi|397779468|ref|YP_006543941.1| - 0.016 14.3 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 6PF2K PF01591.13 gi|397779468|ref|YP_006543941.1| - 0.021 13.8 0.0 0.045 12.8 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase LpxK PF02606.9 gi|397779468|ref|YP_006543941.1| - 0.024 13.6 0.1 0.044 12.7 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Thymidylate_kin PF02223.12 gi|397779468|ref|YP_006543941.1| - 0.034 13.5 0.2 0.09 12.1 0.1 1.8 2 0 0 2 2 1 0 Thymidylate kinase AAA_19 PF13245.1 gi|397779468|ref|YP_006543941.1| - 0.051 13.3 0.7 0.18 11.5 0.0 2.3 3 0 0 3 3 2 0 Part of AAA domain AAA_18 PF13238.1 gi|397779468|ref|YP_006543941.1| - 0.059 13.6 1.9 0.69 10.2 1.3 2.5 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|397779468|ref|YP_006543941.1| - 0.068 12.8 0.1 0.15 11.7 0.1 1.6 1 0 0 1 1 1 0 NTPase AAA_26 PF13500.1 gi|397779468|ref|YP_006543941.1| - 0.089 12.3 0.2 0.27 10.8 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|397779468|ref|YP_006543941.1| - 0.094 12.1 0.1 0.13 11.6 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain Glyco_trans_4_4 PF13579.1 gi|397779468|ref|YP_006543941.1| - 0.13 12.4 0.4 0.6 10.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Methyltrn_RNA_2 PF04013.7 gi|397779469|ref|YP_006543942.1| - 1.8e-56 190.8 0.0 2e-56 190.6 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase THUMP PF02926.12 gi|397779470|ref|YP_006543943.1| - 1.2e-09 38.1 0.0 2.4e-09 37.2 0.0 1.6 1 0 0 1 1 1 1 THUMP domain Ribosomal_L21e PF01157.13 gi|397779471|ref|YP_006543944.1| - 2.9e-29 100.7 2.0 3.2e-29 100.6 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e DUF2103 PF09876.4 gi|397779471|ref|YP_006543944.1| - 0.0011 18.7 0.1 0.0019 17.9 0.1 1.4 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) RNA_pol_Rpb4 PF03874.11 gi|397779472|ref|YP_006543945.1| - 1.7e-13 50.5 1.9 1.9e-13 50.4 1.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Hormone_1 PF00103.15 gi|397779472|ref|YP_006543945.1| - 0.019 14.3 0.4 0.021 14.1 0.2 1.1 1 0 0 1 1 1 0 Somatotropin hormone family DUF2884 PF11101.3 gi|397779472|ref|YP_006543945.1| - 0.047 13.0 0.1 0.05 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) WASH_WAHD PF11945.3 gi|397779472|ref|YP_006543945.1| - 0.11 11.7 0.1 0.15 11.3 0.1 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex VIT1 PF01988.14 gi|397779472|ref|YP_006543945.1| - 0.15 11.5 1.3 0.17 11.3 0.9 1.1 1 0 0 1 1 1 0 VIT family Orbi_VP5 PF00901.12 gi|397779472|ref|YP_006543945.1| - 0.48 8.5 4.2 0.51 8.4 2.9 1.0 1 0 0 1 1 1 0 Orbivirus outer capsid protein VP5 FumaraseC_C PF10415.4 gi|397779472|ref|YP_006543945.1| - 1.6 8.8 6.4 11 6.1 2.1 2.6 2 1 0 2 2 2 0 Fumarase C C-terminus DUF655 PF04919.7 gi|397779473|ref|YP_006543946.1| - 1.9e-70 236.2 0.7 2.2e-70 236.0 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|397779473|ref|YP_006543946.1| - 0.00026 20.9 0.0 0.00057 19.8 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|397779473|ref|YP_006543946.1| - 0.01 15.7 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif RrnaAD PF00398.15 gi|397779474|ref|YP_006543947.1| - 2.9e-48 164.1 0.0 3.5e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|397779474|ref|YP_006543947.1| - 7.4e-12 45.3 0.0 1.2e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397779474|ref|YP_006543947.1| - 5.1e-07 30.2 0.0 8.5e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397779474|ref|YP_006543947.1| - 1.9e-05 24.4 0.0 3e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397779474|ref|YP_006543947.1| - 0.00011 21.7 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|397779474|ref|YP_006543947.1| - 0.00019 20.8 0.0 0.00026 20.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|397779474|ref|YP_006543947.1| - 0.00019 21.8 0.0 0.00037 20.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397779474|ref|YP_006543947.1| - 0.00031 21.1 0.0 0.00061 20.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|397779474|ref|YP_006543947.1| - 0.0011 19.2 0.0 0.0021 18.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|397779474|ref|YP_006543947.1| - 0.073 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Spermine_synth PF01564.12 gi|397779474|ref|YP_006543947.1| - 0.12 11.2 0.1 0.18 10.7 0.1 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|397779475|ref|YP_006543948.1| - 1.9e-14 53.6 0.4 5.8e-14 52.1 0.2 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|397779475|ref|YP_006543948.1| - 2.5e-11 43.2 0.0 3.8e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|397779475|ref|YP_006543948.1| - 2e-06 27.5 0.0 4.6e-06 26.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397779475|ref|YP_006543948.1| - 2.9e-06 27.8 0.0 5e-06 27.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397779475|ref|YP_006543948.1| - 4.9e-06 26.2 0.0 7.8e-06 25.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|397779475|ref|YP_006543948.1| - 5.8e-06 25.6 0.0 8.2e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|397779475|ref|YP_006543948.1| - 8.8e-05 22.9 0.1 0.0012 19.3 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|397779475|ref|YP_006543948.1| - 0.00036 20.1 0.0 0.00055 19.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0146 PF03686.8 gi|397779475|ref|YP_006543948.1| - 0.00052 19.8 0.0 0.00095 18.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_12 PF08242.7 gi|397779475|ref|YP_006543948.1| - 0.0019 18.6 0.0 0.0053 17.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|397779475|ref|YP_006543948.1| - 0.012 14.6 0.0 0.023 13.7 0.0 1.4 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.1 gi|397779475|ref|YP_006543948.1| - 0.033 14.5 0.0 0.086 13.2 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|397779475|ref|YP_006543948.1| - 0.069 12.5 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|397779475|ref|YP_006543948.1| - 0.077 12.6 0.0 0.47 10.1 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Met_10 PF02475.11 gi|397779475|ref|YP_006543948.1| - 0.11 12.1 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_24 PF13578.1 gi|397779475|ref|YP_006543948.1| - 0.12 13.1 0.0 0.55 11.0 0.0 1.9 1 1 1 2 2 2 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|397779475|ref|YP_006543948.1| - 0.54 9.6 1.8 1.2 8.4 0.3 2.2 2 1 0 2 2 2 0 Conserved hypothetical protein 95 MatE PF01554.13 gi|397779476|ref|YP_006543949.1| - 4.2e-56 189.0 53.8 2.5e-32 111.7 12.4 2.5 3 0 0 3 3 3 2 MatE MVIN PF03023.9 gi|397779476|ref|YP_006543949.1| - 2.5e-08 32.7 14.2 2.5e-08 32.7 9.8 2.7 1 1 2 3 3 3 1 MviN-like protein Polysacc_synt_C PF14667.1 gi|397779476|ref|YP_006543949.1| - 0.0015 18.3 24.1 0.0015 18.3 16.7 5.3 1 1 4 5 5 5 2 Polysaccharide biosynthesis C-terminal domain FAM176 PF14851.1 gi|397779476|ref|YP_006543949.1| - 0.26 10.9 0.6 0.58 9.8 0.4 1.5 1 0 0 1 1 1 0 FAM176 family Lon_C PF05362.8 gi|397779477|ref|YP_006543950.1| - 1.4e-16 60.4 0.7 2e-16 59.9 0.5 1.1 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|397779477|ref|YP_006543950.1| - 0.093 12.2 0.2 0.18 11.3 0.1 1.5 1 1 0 1 1 1 0 Subunit ChlI of Mg-chelatase MutL_C PF08676.6 gi|397779478|ref|YP_006543951.1| - 5.9e-36 123.2 0.0 1e-35 122.4 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|397779478|ref|YP_006543951.1| - 6e-35 119.2 0.0 9e-35 118.7 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|397779478|ref|YP_006543951.1| - 7.1e-12 45.1 0.0 1.3e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|397779478|ref|YP_006543951.1| - 2.6e-10 39.9 0.1 6.6e-10 38.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.16 gi|397779479|ref|YP_006543952.1| - 3.9e-94 314.4 0.0 5.4e-94 313.9 0.0 1.2 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|397779479|ref|YP_006543952.1| - 4.4e-44 150.7 0.2 1.1e-43 149.3 0.1 1.7 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|397779479|ref|YP_006543952.1| - 2.5e-43 146.6 0.0 8.2e-43 145.0 0.0 1.9 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|397779479|ref|YP_006543952.1| - 1.6e-29 101.8 0.1 2.8e-29 101.1 0.1 1.4 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|397779479|ref|YP_006543952.1| - 5.3e-25 88.0 0.0 2.2e-24 86.0 0.0 2.1 3 0 0 3 3 3 1 MutS domain II AAA_29 PF13555.1 gi|397779479|ref|YP_006543952.1| - 0.017 14.6 0.0 0.039 13.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|397779479|ref|YP_006543952.1| - 0.026 14.8 0.0 0.074 13.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain Aconitase PF00330.15 gi|397779480|ref|YP_006543953.1| - 1.6e-83 280.7 0.7 2.3e-54 184.6 0.1 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|397779481|ref|YP_006543954.1| - 6.4e-24 84.5 0.0 5.3e-23 81.5 0.0 2.0 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|397779481|ref|YP_006543954.1| - 0.01 15.2 0.2 0.2 11.0 0.2 2.3 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus FAA_hydrolase PF01557.13 gi|397779481|ref|YP_006543954.1| - 0.091 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Fumarylacetoacetate (FAA) hydrolase family Iso_dh PF00180.15 gi|397779482|ref|YP_006543955.1| - 1.1e-94 317.2 0.0 1.3e-94 317.0 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase bPH_2 PF03703.9 gi|397779483|ref|YP_006543956.1| - 1.4e-17 63.5 0.2 1.9e-17 63.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain Acetyltransf_1 PF00583.19 gi|397779484|ref|YP_006543957.1| - 7.3e-18 64.3 1.6 9.9e-18 63.9 1.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|397779484|ref|YP_006543957.1| - 3.6e-11 43.0 0.0 5.6e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|397779484|ref|YP_006543957.1| - 9.4e-11 41.8 1.1 1.7e-10 41.0 0.4 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|397779484|ref|YP_006543957.1| - 1.6e-09 37.4 0.1 2.4e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|397779484|ref|YP_006543957.1| - 5.9e-07 29.5 0.0 8.3e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|397779484|ref|YP_006543957.1| - 3.2e-05 23.8 0.0 6.6e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|397779484|ref|YP_006543957.1| - 6e-05 22.9 0.1 0.0001 22.2 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|397779484|ref|YP_006543957.1| - 0.00047 20.3 0.0 0.0013 18.8 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|397779484|ref|YP_006543957.1| - 0.011 15.2 0.4 0.014 14.9 0.2 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF2156 PF09924.4 gi|397779484|ref|YP_006543957.1| - 0.041 12.6 0.0 0.053 12.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2156) Metal_resist PF13801.1 gi|397779485|ref|YP_006543958.1| - 0.14 12.1 0.6 0.15 12.0 0.4 1.1 1 0 0 1 1 1 0 Heavy-metal resistance Tautomerase_2 PF14552.1 gi|397779486|ref|YP_006543959.1| - 2e-20 72.6 0.0 2.3e-18 65.9 0.0 2.0 1 1 1 2 2 2 2 Tautomerase enzyme Tautomerase PF01361.16 gi|397779486|ref|YP_006543959.1| - 9.2e-17 60.4 0.0 1.9e-08 33.7 0.0 2.1 2 0 0 2 2 2 2 Tautomerase enzyme Oxidored_nitro PF00148.14 gi|397779487|ref|YP_006543960.1| - 9.3e-49 166.1 0.8 1e-47 162.6 0.5 1.9 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Usp PF00582.21 gi|397779488|ref|YP_006543961.1| - 3.2e-29 101.9 0.1 4.5e-29 101.4 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family Bro-N PF02498.12 gi|397779489|ref|YP_006543962.1| - 4.6e-09 36.4 0.0 9.8e-09 35.3 0.0 1.5 1 0 0 1 1 1 1 BRO family, N-terminal domain CALCOCO1 PF07888.6 gi|397779489|ref|YP_006543962.1| - 0.033 12.4 0.1 0.04 12.2 0.1 1.3 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF234 PF03008.9 gi|397779491|ref|YP_006543964.1| - 9.2e-26 89.9 0.0 2e-25 88.8 0.0 1.6 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function Arch_ATPase PF01637.13 gi|397779491|ref|YP_006543964.1| - 6.5e-19 68.5 0.0 1.2e-18 67.6 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|397779491|ref|YP_006543964.1| - 0.0058 16.5 0.0 0.015 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain HTH_5 PF01022.15 gi|397779491|ref|YP_006543964.1| - 0.0083 15.7 0.1 0.022 14.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|397779491|ref|YP_006543964.1| - 0.0091 16.2 0.1 0.04 14.2 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|397779491|ref|YP_006543964.1| - 0.014 14.7 0.0 0.039 13.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|397779491|ref|YP_006543964.1| - 0.024 14.2 0.0 0.066 12.8 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|397779491|ref|YP_006543964.1| - 0.039 13.5 0.2 0.2 11.2 0.0 2.2 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|397779491|ref|YP_006543964.1| - 0.12 12.2 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix AAA_22 PF13401.1 gi|397779491|ref|YP_006543964.1| - 0.15 12.2 0.0 0.82 9.8 0.0 2.2 3 0 0 3 3 3 0 AAA domain Oxidored_nitro PF00148.14 gi|397779493|ref|YP_006543966.1| - 1.1e-54 185.6 0.0 1.3e-54 185.3 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.13 gi|397779494|ref|YP_006543967.1| - 1.5e-111 372.0 0.0 1.6e-111 371.8 0.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|397779494|ref|YP_006543967.1| - 6.3e-11 42.0 0.0 1e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|397779494|ref|YP_006543967.1| - 1.7e-06 27.3 0.0 2.7e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|397779494|ref|YP_006543967.1| - 1.9e-05 24.6 0.0 7.8e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|397779494|ref|YP_006543967.1| - 0.0016 18.4 0.1 0.0055 16.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|397779494|ref|YP_006543967.1| - 0.0022 17.4 0.0 0.0074 15.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|397779494|ref|YP_006543967.1| - 0.0035 16.4 0.2 0.0098 14.9 0.0 1.8 2 0 0 2 2 2 1 ATPase MipZ AAA_10 PF12846.2 gi|397779494|ref|YP_006543967.1| - 0.01 15.2 0.2 0.018 14.5 0.0 1.4 2 0 0 2 2 1 0 AAA-like domain SRP54 PF00448.17 gi|397779494|ref|YP_006543967.1| - 0.017 14.5 0.1 0.036 13.5 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.17 gi|397779494|ref|YP_006543967.1| - 0.026 14.7 0.0 0.066 13.4 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_17 PF13207.1 gi|397779494|ref|YP_006543967.1| - 0.043 14.6 1.3 0.19 12.5 1.0 2.2 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|397779494|ref|YP_006543967.1| - 0.053 12.3 0.0 0.088 11.5 0.0 1.4 1 0 0 1 1 1 0 ArgK protein DUF815 PF05673.8 gi|397779494|ref|YP_006543967.1| - 0.053 12.4 0.0 0.073 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|397779494|ref|YP_006543967.1| - 0.066 12.0 0.0 0.096 11.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|397779494|ref|YP_006543967.1| - 0.071 12.6 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|397779494|ref|YP_006543967.1| - 0.092 12.0 0.1 0.2 10.9 0.0 1.5 2 0 0 2 2 2 0 YhjQ protein NACHT PF05729.7 gi|397779494|ref|YP_006543967.1| - 0.13 11.8 0.1 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.12 gi|397779494|ref|YP_006543967.1| - 0.2 11.4 0.3 0.48 10.2 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function DUF87 ATLF PF07737.6 gi|397779495|ref|YP_006543968.1| - 0.0097 15.3 0.0 0.03 13.7 0.0 1.7 2 0 0 2 2 2 1 Anthrax toxin lethal factor, N- and C-terminal domain TrkH PF02386.11 gi|397779496|ref|YP_006543969.1| - 1.8e-45 155.0 27.9 3.7e-45 154.0 14.6 2.1 2 0 0 2 2 2 2 Cation transport protein PRK PF00485.13 gi|397779497|ref|YP_006543970.1| - 1.1e-55 188.2 0.0 1.7e-55 187.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|397779497|ref|YP_006543970.1| - 1.5e-05 25.7 0.2 4e-05 24.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|397779497|ref|YP_006543970.1| - 0.00073 19.8 0.1 0.0018 18.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|397779497|ref|YP_006543970.1| - 0.0011 18.9 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain T2SE PF00437.15 gi|397779497|ref|YP_006543970.1| - 0.0014 17.6 0.0 0.0021 17.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_21 PF13304.1 gi|397779497|ref|YP_006543970.1| - 0.0055 16.7 0.2 0.039 13.9 0.0 2.0 1 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|397779497|ref|YP_006543970.1| - 0.0075 16.6 0.6 0.011 16.1 0.4 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|397779497|ref|YP_006543970.1| - 0.012 14.7 0.1 0.08 12.0 0.0 2.1 2 1 0 2 2 2 0 Zeta toxin UPF0079 PF02367.12 gi|397779497|ref|YP_006543970.1| - 0.014 15.0 0.0 0.031 13.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|397779497|ref|YP_006543970.1| - 0.032 14.5 0.0 0.053 13.8 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.1 gi|397779497|ref|YP_006543970.1| - 0.041 13.4 0.1 0.08 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|397779497|ref|YP_006543970.1| - 0.058 13.1 0.0 0.14 11.8 0.0 1.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IIGP PF05049.8 gi|397779497|ref|YP_006543970.1| - 0.092 11.5 0.1 0.15 10.8 0.0 1.3 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) FtsK_SpoIIIE PF01580.13 gi|397779497|ref|YP_006543970.1| - 0.1 12.0 0.1 0.45 9.9 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family ATP_bind_1 PF03029.12 gi|397779497|ref|YP_006543970.1| - 0.16 11.4 0.1 0.44 10.0 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Lactamase_B PF00753.22 gi|397779498|ref|YP_006543971.1| - 2.5e-22 79.5 0.3 4.2e-22 78.7 0.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|397779498|ref|YP_006543971.1| - 0.0002 21.3 0.0 0.00033 20.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|397779498|ref|YP_006543971.1| - 0.0011 18.5 0.1 0.0018 17.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Endonuclease_5 PF04493.9 gi|397779499|ref|YP_006543972.1| - 1.6e-60 203.9 0.0 1.9e-60 203.7 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|397779499|ref|YP_006543972.1| - 0.0069 15.5 0.0 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF99 DUF373 PF04123.8 gi|397779501|ref|YP_006543975.1| - 0.18 10.7 1.3 0.2 10.6 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF360 PF04020.8 gi|397779501|ref|YP_006543975.1| - 0.66 10.3 10.1 0.7 10.2 1.8 2.1 1 1 1 2 2 2 0 Membrane protein of unknown function DUF1761 PF08570.5 gi|397779501|ref|YP_006543975.1| - 0.77 9.7 7.0 2.9 7.9 4.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1761) ABC2_membrane_2 PF12679.2 gi|397779501|ref|YP_006543975.1| - 2.5 6.8 9.4 3.9 6.2 6.4 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein tRNA_NucTransf2 PF09249.6 gi|590000600|ref|YP_006543976.2| - 2.5e-44 149.7 0.0 4.1e-44 149.1 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|590000600|ref|YP_006543976.2| - 1.5e-08 34.8 0.0 3.4e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain CNTF PF01110.12 gi|590000600|ref|YP_006543976.2| - 0.14 11.4 0.0 0.24 10.6 0.0 1.3 1 0 0 1 1 1 0 Ciliary neurotrophic factor LigT_PEase PF02834.11 gi|590000601|ref|YP_009001390.1| - 2.5e-27 94.6 0.3 2.3e-14 53.1 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|590000601|ref|YP_009001390.1| - 3.6e-09 36.5 0.0 4.5e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|590000601|ref|YP_009001390.1| - 0.00057 19.6 0.0 0.0014 18.3 0.0 1.7 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Glutaredoxin PF00462.19 gi|397779504|ref|YP_006543977.1| - 2.1e-05 24.4 0.0 2.8e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin NRDD PF13597.1 gi|397779505|ref|YP_006543978.1| - 7.8e-120 400.5 0.1 6.5e-55 186.2 0.0 3.1 3 0 0 3 3 3 3 Anaerobic ribonucleoside-triphosphate reductase LAGLIDADG_3 PF14528.1 gi|397779505|ref|YP_006543978.1| - 1.4e-14 54.0 0.0 4.7e-10 39.5 0.0 3.6 4 0 0 4 4 4 2 LAGLIDADG-like domain Hint PF01079.15 gi|397779505|ref|YP_006543978.1| - 0.00035 19.8 0.0 0.22 10.7 0.0 2.5 2 0 0 2 2 2 2 Hint module ATP-cone PF03477.11 gi|397779505|ref|YP_006543978.1| - 0.0097 16.3 0.0 0.021 15.2 0.0 1.5 1 0 0 1 1 1 1 ATP cone domain DUF1786 PF08735.5 gi|397779506|ref|YP_006543979.1| - 2.7e-86 288.8 0.0 3.3e-86 288.6 0.0 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) MethyltransfD12 PF02086.10 gi|397779508|ref|YP_006543981.1| - 1.2e-54 185.4 0.0 1.4e-54 185.3 0.0 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Response_reg PF00072.19 gi|397779509|ref|YP_006543982.1| - 3e-16 59.3 0.0 3.4e-16 59.2 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HEAT_2 PF13646.1 gi|397779510|ref|YP_006543983.1| - 1.4e-129 422.6 42.9 1e-19 70.6 0.1 11.3 5 4 5 11 11 11 11 HEAT repeats HEAT_PBS PF03130.11 gi|397779510|ref|YP_006543983.1| - 1.2e-55 180.3 89.7 2.5e-05 24.3 0.2 22.4 22 3 1 23 23 23 15 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|397779510|ref|YP_006543983.1| - 1.3e-50 164.9 20.1 0.00052 19.8 0.0 22.1 23 0 0 23 23 23 10 HEAT repeat Arm PF00514.18 gi|397779510|ref|YP_006543983.1| - 1e-36 123.4 2.9 0.079 12.8 0.0 18.3 15 4 6 21 21 21 8 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.1 gi|397779510|ref|YP_006543983.1| - 4e-36 122.5 75.3 0.001 19.5 0.1 19.2 13 6 7 20 20 20 12 HEAT-like repeat Adaptin_N PF01602.15 gi|397779510|ref|YP_006543983.1| - 3.3e-09 35.6 0.0 0.012 13.9 0.0 6.7 7 2 1 8 8 8 2 Adaptin N terminal region ERAP1_C PF11838.3 gi|397779510|ref|YP_006543983.1| - 7.5e-06 25.4 0.0 2.2 7.4 0.0 5.7 5 1 0 5 5 5 1 ERAP1-like C-terminal domain Cnd1 PF12717.2 gi|397779510|ref|YP_006543983.1| - 8.4e-06 25.7 0.0 0.16 11.7 0.0 6.7 9 1 0 9 9 9 1 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.2 gi|397779510|ref|YP_006543983.1| - 1.1e-05 25.6 0.0 1.9 8.9 0.0 6.6 7 1 0 7 7 7 1 Vacuolar 14 Fab1-binding region Aconitase_B_N PF11791.3 gi|397779510|ref|YP_006543983.1| - 0.0004 20.2 0.0 1.3e+02 2.3 0.0 6.4 8 0 0 8 8 7 0 Aconitate B N-terminal domain CLASP_N PF12348.3 gi|397779510|ref|YP_006543983.1| - 0.0059 15.9 0.6 9.7 5.4 0.0 4.8 3 2 1 4 4 4 1 CLASP N terminal Cohesin_HEAT PF12765.2 gi|397779510|ref|YP_006543983.1| - 0.023 14.6 9.5 18 5.3 0.1 6.5 7 0 0 7 7 7 0 HEAT repeat associated with sister chromatid cohesion Tecti-min-caps PF09300.5 gi|397779510|ref|YP_006543983.1| - 0.13 12.1 0.0 5.3 6.8 0.0 2.4 2 0 0 2 2 2 0 Tectiviridae, minor capsid DUF1641 PF07849.6 gi|397779510|ref|YP_006543983.1| - 0.6 9.7 6.2 19 4.9 0.0 5.5 5 0 0 5 5 5 0 Protein of unknown function (DUF1641) HATPase_c PF02518.21 gi|397779511|ref|YP_006543984.1| - 7.9e-20 70.6 0.0 1.2e-19 70.0 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|397779511|ref|YP_006543984.1| - 6.5e-05 22.7 0.0 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|397779511|ref|YP_006543984.1| - 0.0043 16.7 0.0 0.0098 15.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|397779511|ref|YP_006543984.1| - 0.0062 16.5 0.1 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|397779511|ref|YP_006543984.1| - 0.059 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Coat_F PF07875.7 gi|397779511|ref|YP_006543984.1| - 0.09 12.9 0.4 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 Coat F domain PAS_8 PF13188.1 gi|397779512|ref|YP_006543985.1| - 1.9e-17 62.4 0.0 4.4e-09 35.8 0.1 2.5 2 0 0 2 2 2 2 PAS domain PAS_9 PF13426.1 gi|397779512|ref|YP_006543985.1| - 3.5e-16 59.4 0.0 4.3e-10 39.9 0.0 3.5 3 1 0 3 3 3 2 PAS domain PAS PF00989.19 gi|397779512|ref|YP_006543985.1| - 1.1e-12 47.7 0.0 3.3e-08 33.3 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|397779512|ref|YP_006543985.1| - 3.6e-08 33.4 0.1 6e-06 26.2 0.0 2.6 2 1 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|397779512|ref|YP_006543985.1| - 2.2e-07 31.4 0.1 1e-06 29.2 0.0 2.1 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|397779512|ref|YP_006543985.1| - 0.00078 19.5 0.0 0.011 15.8 0.0 2.4 2 1 0 2 2 2 1 GAF domain DUF4118 PF13493.1 gi|397779512|ref|YP_006543985.1| - 0.0015 18.6 6.5 0.0024 18.0 4.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) Ribosomal_S13_N PF08069.7 gi|397779513|ref|YP_006543986.1| - 5.5e-27 93.3 0.2 1.1e-26 92.4 0.1 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|397779513|ref|YP_006543986.1| - 6.5e-18 64.2 0.2 1e-17 63.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 HTH_32 PF13565.1 gi|397779513|ref|YP_006543986.1| - 0.087 13.6 0.6 0.19 12.5 0.0 1.9 2 2 0 2 2 2 0 Homeodomain-like domain DHHA1 PF02272.14 gi|397779514|ref|YP_006543987.1| - 3.1e-14 52.4 0.2 1.2e-13 50.5 0.1 2.0 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|397779514|ref|YP_006543987.1| - 6.4e-08 32.3 0.1 4e-07 29.7 0.1 2.1 1 1 0 1 1 1 1 DHH family Ribosomal_S3Ae PF01015.13 gi|397779516|ref|YP_006543989.1| - 2.4e-69 232.5 4.2 2.6e-69 232.4 2.9 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family PhosphMutase PF10143.4 gi|397779518|ref|YP_006543991.1| - 9.4e-53 178.3 0.0 1.3e-52 177.9 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|397779518|ref|YP_006543991.1| - 1.8e-47 161.8 0.0 2.1e-47 161.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|397779518|ref|YP_006543991.1| - 0.0014 18.0 0.0 0.048 12.9 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.15 gi|397779518|ref|YP_006543991.1| - 0.026 13.2 0.0 0.042 12.5 0.0 1.3 1 0 0 1 1 1 0 Alkaline phosphatase Bactofilin PF04519.8 gi|397779519|ref|YP_006543992.1| - 1.5e-12 47.3 10.2 3.3e-08 33.4 1.9 3.8 2 2 1 3 3 3 3 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|397779519|ref|YP_006543992.1| - 1.2e-08 34.0 18.8 0.00024 20.4 0.1 6.6 3 2 1 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Methyltransf_25 PF13649.1 gi|397779520|ref|YP_006543993.1| - 0.00071 19.9 0.0 0.0016 18.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|397779520|ref|YP_006543993.1| - 0.046 13.7 0.2 0.082 12.9 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain MFS_1 PF07690.11 gi|397779521|ref|YP_006543994.1| - 1.6e-54 184.9 61.6 9.7e-36 123.1 19.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|397779521|ref|YP_006543994.1| - 6.2e-09 34.5 28.2 1.8e-05 23.0 2.7 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|397779521|ref|YP_006543994.1| - 2.5e-07 29.4 36.9 6.2e-07 28.1 8.0 2.8 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|397779521|ref|YP_006543994.1| - 4.4e-05 22.2 17.0 4.4e-05 22.2 11.7 3.9 2 2 2 4 4 4 1 Sugar (and other) transporter OATP PF03137.15 gi|397779521|ref|YP_006543994.1| - 0.0096 14.0 1.5 0.0096 14.0 1.0 3.3 2 2 2 4 4 4 1 Organic Anion Transporter Polypeptide (OATP) family Folate_carrier PF01770.13 gi|397779521|ref|YP_006543994.1| - 0.14 10.5 0.0 0.14 10.5 0.0 2.3 2 1 1 3 3 3 0 Reduced folate carrier HisKA PF00512.20 gi|397779522|ref|YP_006543995.1| - 2.4e-05 24.2 0.5 6e-05 22.9 0.1 2.0 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|397779522|ref|YP_006543995.1| - 0.0006 19.5 0.0 0.0021 17.8 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|397779522|ref|YP_006543995.1| - 0.00067 19.6 0.5 0.0032 17.5 0.4 2.1 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|397779522|ref|YP_006543995.1| - 0.00071 19.9 0.0 0.036 14.4 0.0 2.7 1 1 0 1 1 1 1 PAS domain HAMP PF00672.20 gi|397779522|ref|YP_006543995.1| - 0.006 16.7 0.2 0.017 15.3 0.2 1.8 1 0 0 1 1 1 1 HAMP domain DUF2450 PF10475.4 gi|397779522|ref|YP_006543995.1| - 0.043 12.7 3.7 0.16 10.8 2.5 1.8 1 1 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) zf-C4H2 PF10146.4 gi|397779522|ref|YP_006543995.1| - 4.2 7.3 7.9 4.6 7.1 4.9 1.4 2 0 0 2 2 2 0 Zinc finger-containing protein DEAD PF00270.24 gi|397779523|ref|YP_006543996.1| - 8.5e-23 80.6 0.0 2.8e-22 79.0 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|397779523|ref|YP_006543996.1| - 9.7e-14 50.9 0.0 2.5e-13 49.6 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|397779523|ref|YP_006543996.1| - 0.00058 19.7 0.0 0.0013 18.5 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Prim_Zn_Ribbon PF08273.7 gi|397779523|ref|YP_006543996.1| - 0.27 11.3 0.8 0.72 9.9 0.6 1.7 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase HTH_24 PF13412.1 gi|397779524|ref|YP_006543997.1| - 2e-11 43.0 0.0 4.6e-11 41.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|397779524|ref|YP_006543997.1| - 3e-10 39.6 0.0 6.6e-10 38.5 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|397779524|ref|YP_006543997.1| - 5.4e-09 35.6 0.1 1.8e-08 33.9 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|397779524|ref|YP_006543997.1| - 9.2e-07 29.1 0.1 2.2e-06 27.8 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|397779524|ref|YP_006543997.1| - 3.1e-06 26.8 0.1 1.9e-05 24.3 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|397779524|ref|YP_006543997.1| - 2.6e-05 24.0 0.0 6.5e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|397779524|ref|YP_006543997.1| - 6.7e-05 22.4 0.0 0.00015 21.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|397779524|ref|YP_006543997.1| - 7.7e-05 22.2 0.2 0.00024 20.6 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_45 PF14947.1 gi|397779524|ref|YP_006543997.1| - 0.00015 21.4 0.0 0.00027 20.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix EAP30 PF04157.11 gi|397779524|ref|YP_006543997.1| - 0.00022 20.4 0.0 0.00056 19.1 0.0 1.7 2 0 0 2 2 1 1 EAP30/Vps36 family HTH_29 PF13551.1 gi|397779524|ref|YP_006543997.1| - 0.00038 20.5 0.4 0.00084 19.4 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_5 PF01022.15 gi|397779524|ref|YP_006543997.1| - 0.00042 19.9 0.0 0.00098 18.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_3 PF01381.17 gi|397779524|ref|YP_006543997.1| - 0.00046 19.9 0.1 0.0017 18.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix Rrf2 PF02082.15 gi|397779524|ref|YP_006543997.1| - 0.00046 20.2 0.0 0.001 19.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PCI PF01399.22 gi|397779524|ref|YP_006543997.1| - 0.001 19.3 0.8 0.0069 16.6 0.0 2.5 3 0 0 3 3 3 1 PCI domain GntR PF00392.16 gi|397779524|ref|YP_006543997.1| - 0.0011 18.3 0.0 0.0031 16.9 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|397779524|ref|YP_006543997.1| - 0.0016 17.9 0.0 0.003 17.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF4423 PF14394.1 gi|397779524|ref|YP_006543997.1| - 0.0023 17.4 0.0 0.004 16.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_20 PF12840.2 gi|397779524|ref|YP_006543997.1| - 0.0024 17.6 0.4 0.0059 16.3 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|397779524|ref|YP_006543997.1| - 0.0024 18.0 0.1 0.098 12.9 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain DUF977 PF06163.6 gi|397779524|ref|YP_006543997.1| - 0.0027 17.4 0.5 0.0081 15.8 0.2 1.8 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF977) HTH_10 PF04967.7 gi|397779524|ref|YP_006543997.1| - 0.0035 16.9 0.0 0.013 15.0 0.0 1.9 2 0 0 2 2 1 1 HTH DNA binding domain TrmB PF01978.14 gi|397779524|ref|YP_006543997.1| - 0.0038 16.8 0.0 0.012 15.2 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|397779524|ref|YP_006543997.1| - 0.0083 16.1 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_13 PF11972.3 gi|397779524|ref|YP_006543997.1| - 0.0087 15.8 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_1 PF00126.22 gi|397779524|ref|YP_006543997.1| - 0.01 15.5 0.0 0.063 13.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Mnd1 PF03962.10 gi|397779524|ref|YP_006543997.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Mnd1 family HTH_AsnC-type PF13404.1 gi|397779524|ref|YP_006543997.1| - 0.011 15.2 0.0 0.022 14.2 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_38 PF13936.1 gi|397779524|ref|YP_006543997.1| - 0.038 13.5 0.1 0.079 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Mga PF08280.6 gi|397779524|ref|YP_006543997.1| - 0.047 13.4 0.0 0.082 12.6 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_36 PF13730.1 gi|397779524|ref|YP_006543997.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.5 gi|397779524|ref|YP_006543997.1| - 0.13 12.4 0.0 0.41 10.8 0.0 1.8 2 0 0 2 2 1 0 KorB domain HTH_37 PF13744.1 gi|397779524|ref|YP_006543997.1| - 0.13 12.0 0.2 1.2 9.0 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain ArsR PF09824.4 gi|397779525|ref|YP_006543998.1| - 1.3e-62 209.8 0.0 1.5e-62 209.6 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator Clathrin PF00637.15 gi|397779525|ref|YP_006543998.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Region in Clathrin and VPS Sua5_yciO_yrdC PF01300.13 gi|397779526|ref|YP_006543999.1| - 1.1e-33 116.0 0.0 1.8e-33 115.3 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|397779526|ref|YP_006543999.1| - 6.6e-26 89.4 12.3 8.6e-15 53.8 3.0 2.4 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|397779526|ref|YP_006543999.1| - 1.4e-18 66.7 0.0 2.5e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|397779526|ref|YP_006543999.1| - 5.3e-07 29.3 0.2 0.00024 20.6 0.0 2.2 2 0 0 2 2 2 2 Glycoprotease family DUF678 PF05077.7 gi|397779526|ref|YP_006543999.1| - 1.5 8.8 5.0 1.8 8.5 0.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF678) Voltage_CLC PF00654.15 gi|397779527|ref|YP_006544000.1| - 1.3e-22 80.2 39.7 1.3e-22 80.2 27.5 1.4 1 1 0 1 1 1 1 Voltage gated chloride channel DUF3303 PF11746.3 gi|397779528|ref|YP_006544001.1| - 1.5e-13 50.9 0.0 1.6e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) ABC_tran PF00005.22 gi|397779529|ref|YP_006544002.1| - 1.8e-33 115.7 0.0 2.2e-33 115.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397779529|ref|YP_006544002.1| - 5.3e-11 43.0 0.0 0.00021 21.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397779529|ref|YP_006544002.1| - 2.9e-06 26.6 0.1 3.3e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|397779529|ref|YP_006544002.1| - 0.00017 20.7 0.0 0.37 9.7 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|397779529|ref|YP_006544002.1| - 0.00089 19.4 1.0 0.014 15.5 0.7 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|397779529|ref|YP_006544002.1| - 0.001 19.2 0.2 0.014 15.5 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|397779529|ref|YP_006544002.1| - 0.0019 18.5 0.0 0.0025 18.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|397779529|ref|YP_006544002.1| - 0.003 16.7 0.1 0.0095 15.1 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|397779529|ref|YP_006544002.1| - 0.003 17.5 0.5 0.0098 15.8 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|397779529|ref|YP_006544002.1| - 0.0052 16.2 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|397779529|ref|YP_006544002.1| - 0.008 16.0 0.2 0.15 11.9 0.0 2.6 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|397779529|ref|YP_006544002.1| - 0.018 14.4 0.2 0.29 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|397779529|ref|YP_006544002.1| - 0.031 13.9 0.1 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|397779529|ref|YP_006544002.1| - 0.032 13.0 0.1 0.063 12.1 0.0 1.4 2 0 0 2 2 2 0 NB-ARC domain DUF258 PF03193.11 gi|397779529|ref|YP_006544002.1| - 0.037 13.2 0.0 0.052 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|397779529|ref|YP_006544002.1| - 0.052 12.9 0.1 0.08 12.3 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|397779529|ref|YP_006544002.1| - 0.052 13.1 0.1 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|397779529|ref|YP_006544002.1| - 0.086 12.7 0.2 0.31 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|397779529|ref|YP_006544002.1| - 0.09 11.4 0.1 0.12 10.9 0.1 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MobB PF03205.9 gi|397779529|ref|YP_006544002.1| - 0.11 12.2 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FecCD PF01032.13 gi|397779530|ref|YP_006544003.1| - 4.9e-87 291.6 39.2 6.2e-87 291.3 27.2 1.1 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|397779531|ref|YP_006544004.1| - 9.5e-30 103.4 0.0 1.2e-29 103.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF955 PF06114.8 gi|397779533|ref|YP_006544006.1| - 1.1e-16 60.6 0.0 1.8e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF955) HTH_31 PF13560.1 gi|397779533|ref|YP_006544006.1| - 2.5e-12 46.7 0.1 9.9e-12 44.8 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|397779533|ref|YP_006544006.1| - 1.2e-10 41.0 0.0 9.5e-10 38.1 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|397779533|ref|YP_006544006.1| - 1.9e-08 34.1 0.0 1.6e-07 31.2 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|397779533|ref|YP_006544006.1| - 0.0024 17.4 1.1 0.022 14.4 0.0 2.9 3 0 0 3 3 3 1 Homeodomain-like domain HTH_25 PF13413.1 gi|397779533|ref|YP_006544006.1| - 0.0038 16.8 0.0 0.013 15.1 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|397779533|ref|YP_006544006.1| - 0.031 13.6 0.0 0.17 11.2 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 Peptidase_U49 PF10463.4 gi|397779533|ref|YP_006544006.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Peptidase U49 HTH_28 PF13518.1 gi|397779533|ref|YP_006544006.1| - 0.82 9.7 3.7 6.2 6.9 0.1 3.5 4 0 0 4 4 4 0 Helix-turn-helix domain DUF4411 PF14367.1 gi|397779534|ref|YP_006544007.1| - 3e-29 101.8 0.0 3.5e-29 101.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4411) AhpC-TSA PF00578.16 gi|397779536|ref|YP_006544009.1| - 2.2e-37 127.5 0.0 2.6e-37 127.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|397779536|ref|YP_006544009.1| - 1.8e-15 56.7 0.0 2e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|397779536|ref|YP_006544009.1| - 0.013 15.4 0.0 0.03 14.2 0.0 1.6 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|397779536|ref|YP_006544009.1| - 0.019 14.3 0.0 0.023 14.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Galanin PF01296.13 gi|397779536|ref|YP_006544009.1| - 0.038 13.8 0.6 0.12 12.2 0.1 2.0 2 0 0 2 2 2 0 Galanin Fer4_7 PF12838.2 gi|397779537|ref|YP_006544010.1| - 9.5e-05 22.7 10.5 0.00033 20.9 7.4 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397779537|ref|YP_006544010.1| - 0.00049 19.8 16.9 0.012 15.4 2.3 2.9 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|397779537|ref|YP_006544010.1| - 0.0006 20.0 9.4 0.0006 20.0 6.5 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397779537|ref|YP_006544010.1| - 0.0018 18.0 12.7 0.14 12.1 0.6 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|397779537|ref|YP_006544010.1| - 0.0038 17.4 11.8 0.21 11.9 0.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|397779537|ref|YP_006544010.1| - 0.015 15.7 18.5 0.18 12.4 0.8 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397779537|ref|YP_006544010.1| - 0.088 12.8 9.9 0.42 10.6 6.9 2.0 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397779537|ref|YP_006544010.1| - 0.1 12.4 4.6 0.72 9.7 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397779537|ref|YP_006544010.1| - 0.12 12.1 13.3 0.17 11.6 8.3 2.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|397779537|ref|YP_006544010.1| - 0.17 11.5 13.1 0.73 9.5 0.7 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|397779537|ref|YP_006544010.1| - 0.91 9.9 12.4 3.8 7.9 8.1 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397779537|ref|YP_006544010.1| - 2.3 9.0 9.3 14 6.4 6.5 2.2 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Plasmid_stabil PF05016.9 gi|397779539|ref|YP_006544012.1| - 1.4e-08 34.9 0.1 2e-08 34.5 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|397779539|ref|YP_006544012.1| - 0.018 15.0 0.0 0.023 14.7 0.0 1.1 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) HTH_10 PF04967.7 gi|397779541|ref|YP_006544014.1| - 0.45 10.1 2.6 0.83 9.2 1.8 1.5 1 1 0 1 1 1 0 HTH DNA binding domain SYCE1 PF15233.1 gi|397779541|ref|YP_006544014.1| - 1 9.3 7.2 1.1 9.2 5.0 1.0 1 0 0 1 1 1 0 Synaptonemal complex central element protein 1 LRR_4 PF12799.2 gi|397779543|ref|YP_006544016.1| - 1e-10 40.9 6.9 1.3e-09 37.4 4.8 2.4 1 1 1 2 2 2 2 Leucine Rich repeats (2 copies) LRR_8 PF13855.1 gi|397779543|ref|YP_006544016.1| - 6.8e-06 25.7 1.4 1.3e-05 24.8 1.0 1.5 1 0 0 1 1 1 1 Leucine rich repeat LRR_6 PF13516.1 gi|397779543|ref|YP_006544016.1| - 0.05 13.6 4.1 0.23 11.6 0.5 3.0 2 0 0 2 2 2 0 Leucine Rich repeat LRR_7 PF13504.1 gi|397779543|ref|YP_006544016.1| - 0.13 12.5 1.6 1.4 9.4 0.1 2.9 2 0 0 2 2 2 0 Leucine rich repeat LRR_9 PF14580.1 gi|397779543|ref|YP_006544016.1| - 0.15 11.6 0.1 0.22 11.0 0.1 1.3 1 0 0 1 1 1 0 Leucine-rich repeat LRR_1 PF00560.28 gi|397779543|ref|YP_006544016.1| - 0.37 10.9 4.5 1.3 9.2 0.2 3.0 2 0 0 2 2 2 0 Leucine Rich Repeat Abhydrolase_3 PF07859.8 gi|397779545|ref|YP_006544018.1| - 8.5e-53 179.0 0.8 1e-52 178.7 0.5 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF2424 PF10340.4 gi|397779545|ref|YP_006544018.1| - 1.6e-09 36.9 0.0 2.2e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) Abhydrolase_5 PF12695.2 gi|397779545|ref|YP_006544018.1| - 6.2e-07 29.2 0.8 7.4e-07 29.0 0.6 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|397779545|ref|YP_006544018.1| - 0.0019 17.4 0.0 0.0028 16.9 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PolC_DP2 PF03833.8 gi|397779546|ref|YP_006544019.1| - 0 1169.8 0.0 0 1168.3 0.0 1.7 2 1 0 2 2 2 1 DNA polymerase II large subunit DP2 PT-HINT PF07591.6 gi|397779546|ref|YP_006544019.1| - 0.0013 18.6 0.0 0.0052 16.6 0.0 1.9 2 0 0 2 2 2 1 Pretoxin HINT domain Hint PF01079.15 gi|397779546|ref|YP_006544019.1| - 0.013 14.7 0.1 0.72 9.0 0.0 2.2 2 0 0 2 2 2 0 Hint module Antiterm PF03589.8 gi|397779546|ref|YP_006544019.1| - 0.04 14.0 0.3 0.11 12.5 0.2 1.7 1 0 0 1 1 1 0 Antitermination protein HEAT_2 PF13646.1 gi|590000602|ref|YP_006544020.2| - 1.8e-22 79.4 1.6 1.5e-11 44.3 0.3 2.2 2 0 0 2 2 2 2 HEAT repeats HEAT_PBS PF03130.11 gi|590000602|ref|YP_006544020.2| - 4.1e-14 51.5 12.0 0.0013 19.0 0.2 5.1 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat Arm PF00514.18 gi|590000602|ref|YP_006544020.2| - 6.3e-06 25.8 0.9 0.0074 16.0 0.0 4.1 2 1 3 5 5 5 1 Armadillo/beta-catenin-like repeat HEAT PF02985.17 gi|590000602|ref|YP_006544020.2| - 0.0019 18.1 2.7 5.5 7.3 0.0 4.2 4 0 0 4 4 4 2 HEAT repeat HEAT_EZ PF13513.1 gi|590000602|ref|YP_006544020.2| - 0.0021 18.4 9.2 0.021 15.2 0.3 4.1 2 2 2 4 4 4 1 HEAT-like repeat Vac14_Fab1_bd PF12755.2 gi|590000602|ref|YP_006544020.2| - 0.1 12.9 0.0 0.33 11.3 0.0 1.8 1 1 1 2 2 2 0 Vacuolar 14 Fab1-binding region HEAT_2 PF13646.1 gi|397779548|ref|YP_006544021.1| - 4.8e-58 193.4 22.8 1.5e-17 63.6 1.4 5.1 1 1 4 5 5 5 5 HEAT repeats HEAT PF02985.17 gi|397779548|ref|YP_006544021.1| - 1.4e-31 105.6 9.1 0.0024 17.7 0.1 9.5 8 1 1 9 9 9 8 HEAT repeat HEAT_PBS PF03130.11 gi|397779548|ref|YP_006544021.1| - 8.7e-29 97.0 56.8 5.6e-06 26.3 2.0 9.5 9 0 0 9 9 9 8 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|397779548|ref|YP_006544021.1| - 1.3e-27 95.5 37.8 9.2e-06 25.9 1.0 9.4 7 2 3 10 10 10 9 HEAT-like repeat Arm PF00514.18 gi|397779548|ref|YP_006544021.1| - 2.1e-19 68.5 6.8 0.0062 16.3 0.0 8.2 5 2 3 8 8 8 5 Armadillo/beta-catenin-like repeat Cnd1 PF12717.2 gi|397779548|ref|YP_006544021.1| - 0.00034 20.5 0.0 5.5 6.7 0.0 4.3 5 1 0 5 5 5 2 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.2 gi|397779548|ref|YP_006544021.1| - 0.0058 17.0 0.0 71 3.8 0.0 4.9 2 2 3 5 5 5 0 Vacuolar 14 Fab1-binding region Adaptin_N PF01602.15 gi|397779548|ref|YP_006544021.1| - 0.0095 14.3 0.0 0.11 10.8 0.1 2.4 2 1 1 3 3 3 1 Adaptin N terminal region Aconitase_B_N PF11791.3 gi|397779548|ref|YP_006544021.1| - 0.014 15.2 0.7 2.1 8.1 0.0 3.7 3 2 2 5 5 5 0 Aconitate B N-terminal domain DJ-1_PfpI PF01965.19 gi|590000603|ref|YP_006544022.2| - 2e-37 127.8 0.0 2.4e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|590000603|ref|YP_006544022.2| - 9e-14 51.0 0.0 1.2e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|590000603|ref|YP_006544022.2| - 0.00045 19.7 0.0 0.00052 19.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Pantoate_transf PF02548.10 gi|590000603|ref|YP_006544022.2| - 0.0035 16.4 0.0 0.014 14.5 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate hydroxymethyltransferase GATase_5 PF13507.1 gi|590000603|ref|YP_006544022.2| - 0.0046 15.8 0.0 0.024 13.5 0.0 1.9 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.9 gi|590000603|ref|YP_006544022.2| - 0.0048 16.4 0.0 0.0077 15.8 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain E1-E2_ATPase PF00122.15 gi|397779550|ref|YP_006544023.1| - 5.5e-74 248.0 5.7 1.1e-72 243.7 2.2 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|397779550|ref|YP_006544023.1| - 1.3e-48 164.9 4.5 1.3e-48 164.9 3.1 1.9 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|397779550|ref|YP_006544023.1| - 3.1e-30 106.2 2.7 4.5e-30 105.6 0.5 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|397779550|ref|YP_006544023.1| - 3.1e-20 71.3 1.0 1.4e-19 69.3 0.1 2.3 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|397779550|ref|YP_006544023.1| - 1.3e-17 64.6 0.0 3.6e-17 63.1 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|397779550|ref|YP_006544023.1| - 3.6e-16 58.8 0.0 1e-15 57.4 0.0 1.8 2 0 0 2 2 2 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|397779550|ref|YP_006544023.1| - 6.3e-05 22.6 0.7 0.018 14.6 0.7 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase DUF751 PF05421.6 gi|397779550|ref|YP_006544023.1| - 0.21 11.9 0.1 0.21 11.9 0.1 4.2 4 1 1 5 5 5 0 Protein of unknown function (DUF751) DUF4418 PF14387.1 gi|397779550|ref|YP_006544023.1| - 9.5 5.9 11.5 1.7 8.3 2.2 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) CitMHS PF03600.11 gi|397779551|ref|YP_006544024.1| - 5e-56 189.7 26.5 5e-56 189.7 18.3 2.0 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.10 gi|397779551|ref|YP_006544024.1| - 9.2e-23 80.8 34.2 1.1e-22 80.6 23.7 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein HEAT_2 PF13646.1 gi|397779552|ref|YP_006544025.1| - 1.4e-10 41.3 2.5 1.8e-10 40.9 1.7 1.1 1 0 0 1 1 1 1 HEAT repeats HEAT PF02985.17 gi|397779552|ref|YP_006544025.1| - 5.6e-08 32.2 0.7 8.8e-05 22.2 0.0 2.2 2 0 0 2 2 2 2 HEAT repeat HEAT_EZ PF13513.1 gi|397779552|ref|YP_006544025.1| - 0.0012 19.2 3.9 0.016 15.7 0.2 2.8 2 1 1 3 3 3 1 HEAT-like repeat HEAT_PBS PF03130.11 gi|397779552|ref|YP_006544025.1| - 0.0099 16.2 0.6 0.0099 16.2 0.4 2.9 3 0 0 3 3 3 1 PBS lyase HEAT-like repeat DUF2019 PF09450.5 gi|397779552|ref|YP_006544025.1| - 0.029 14.2 0.0 0.034 13.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2019) Cnd1 PF12717.2 gi|397779552|ref|YP_006544025.1| - 0.084 12.7 0.0 0.11 12.2 0.0 1.3 1 1 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 Cohesin_HEAT PF12765.2 gi|397779552|ref|YP_006544025.1| - 0.46 10.5 0.4 0.46 10.5 0.3 2.1 2 1 0 2 2 2 0 HEAT repeat associated with sister chromatid cohesion HEAT_2 PF13646.1 gi|397779553|ref|YP_006544026.1| - 1.5e-11 44.3 1.3 1.8e-11 44.1 0.9 1.2 1 0 0 1 1 1 1 HEAT repeats HEAT PF02985.17 gi|397779553|ref|YP_006544026.1| - 1.1e-06 28.1 0.1 0.0049 16.8 0.0 2.2 2 0 0 2 2 2 2 HEAT repeat HEAT_EZ PF13513.1 gi|397779553|ref|YP_006544026.1| - 6e-05 23.4 1.6 0.11 13.0 0.1 2.3 2 0 0 2 2 2 2 HEAT-like repeat HEAT_PBS PF03130.11 gi|397779553|ref|YP_006544026.1| - 0.0016 18.6 3.3 0.0093 16.3 0.0 2.8 3 0 0 3 3 3 1 PBS lyase HEAT-like repeat Arm PF00514.18 gi|397779553|ref|YP_006544026.1| - 0.067 13.0 0.0 0.31 10.9 0.0 1.9 1 1 1 2 2 2 0 Armadillo/beta-catenin-like repeat N6_N4_Mtase PF01555.13 gi|397779554|ref|YP_006544027.1| - 2.1e-28 99.3 0.0 2.9e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|397779554|ref|YP_006544027.1| - 2e-07 31.0 0.0 1.6e-06 28.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|397779554|ref|YP_006544027.1| - 0.0042 16.4 0.0 0.0094 15.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain UPF0020 PF01170.13 gi|397779554|ref|YP_006544027.1| - 0.019 14.5 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Cupin_2 PF07883.6 gi|397779554|ref|YP_006544027.1| - 0.045 13.2 0.1 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 Cupin domain V4R PF02830.13 gi|397779556|ref|YP_006544029.1| - 2.2e-16 59.4 0.2 3.5e-16 58.7 0.1 1.3 1 0 0 1 1 1 1 V4R domain HTH_20 PF12840.2 gi|397779556|ref|YP_006544029.1| - 1.5e-09 37.4 0.1 4.4e-09 36.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|397779556|ref|YP_006544029.1| - 2.4e-06 27.1 0.2 4.2e-06 26.3 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|397779556|ref|YP_006544029.1| - 1.9e-05 24.2 0.0 3.3e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|397779556|ref|YP_006544029.1| - 0.0011 19.2 0.0 0.0019 18.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|397779556|ref|YP_006544029.1| - 0.0017 17.9 0.0 0.0026 17.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|397779556|ref|YP_006544029.1| - 0.078 12.5 0.1 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|397779556|ref|YP_006544029.1| - 0.095 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Lactamase_B PF00753.22 gi|397779557|ref|YP_006544030.1| - 9.2e-23 80.9 0.1 1.5e-22 80.2 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|397779557|ref|YP_006544030.1| - 2e-11 44.0 0.0 3.9e-11 43.1 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|397779557|ref|YP_006544030.1| - 0.00016 21.3 0.0 0.00029 20.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FMN_red PF03358.10 gi|397779557|ref|YP_006544030.1| - 0.0017 17.8 0.0 0.0034 16.9 0.0 1.5 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.2 gi|397779557|ref|YP_006544030.1| - 0.0029 17.6 0.0 0.011 15.7 0.0 1.8 1 1 0 1 1 1 1 Flavodoxin domain PGM_PMM_I PF02878.11 gi|397779557|ref|YP_006544030.1| - 0.017 14.6 0.6 0.05 13.0 0.1 2.0 2 1 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|397779557|ref|YP_006544030.1| - 0.02 15.2 0.1 0.075 13.3 0.0 1.9 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II QH-AmDH_gamma PF08992.6 gi|397779557|ref|YP_006544030.1| - 0.027 14.2 0.0 2 8.2 0.0 2.5 2 0 0 2 2 2 0 Quinohemoprotein amine dehydrogenase, gamma subunit UPF0104 PF03706.8 gi|397779558|ref|YP_006544031.1| - 5.6e-42 144.0 34.8 6.9e-42 143.7 24.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) SUR7 PF06687.7 gi|397779558|ref|YP_006544031.1| - 0.0039 16.7 0.0 0.05 13.1 0.0 2.4 1 1 1 2 2 2 1 SUR7/PalI family TraP PF07296.6 gi|397779558|ref|YP_006544031.1| - 2.1 7.2 3.9 29 3.5 0.0 2.4 2 0 0 2 2 2 0 TraP protein ACT PF01842.20 gi|397779559|ref|YP_006544032.1| - 1.8e-08 33.6 0.0 1.1e-07 31.1 0.0 2.2 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|397779559|ref|YP_006544032.1| - 2.8e-05 24.3 0.1 8.5e-05 22.8 0.0 1.8 1 1 0 1 1 1 1 ACT domain Transketolase_C PF02780.15 gi|397779559|ref|YP_006544032.1| - 0.1 12.5 0.3 0.23 11.3 0.2 1.6 1 1 0 1 1 1 0 Transketolase, C-terminal domain ACT_6 PF13740.1 gi|397779559|ref|YP_006544032.1| - 0.11 12.2 0.1 0.34 10.6 0.1 1.8 1 0 0 1 1 1 0 ACT domain Sua5_yciO_yrdC PF01300.13 gi|397779560|ref|YP_006544033.1| - 9e-48 161.8 0.0 1e-47 161.6 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination NTP_transf_2 PF01909.18 gi|397779561|ref|YP_006544034.1| - 0.0015 18.7 0.0 0.0031 17.8 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Cas_Cas4 PF01930.12 gi|397779562|ref|YP_006544035.1| - 6e-07 29.5 0.0 5.8e-06 26.3 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|397779562|ref|YP_006544035.1| - 0.002 17.5 2.7 0.065 12.6 1.9 2.2 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3467 PF11950.3 gi|397779563|ref|YP_006544036.1| - 8.7e-18 64.1 0.0 1.1e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) YcfA PF07927.7 gi|397779565|ref|YP_006544038.1| - 0.00081 19.2 0.4 0.0011 18.7 0.3 1.2 1 0 0 1 1 1 1 YcfA-like protein DUF1269 PF06897.7 gi|397779567|ref|YP_006544040.1| - 3e-07 30.3 0.9 6e-07 29.4 0.6 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) Ribosomal_60s PF00428.14 gi|397779567|ref|YP_006544040.1| - 0.15 12.4 10.0 0.067 13.5 2.5 2.1 2 0 0 2 2 2 0 60s Acidic ribosomal protein Gly-zipper_OmpA PF13436.1 gi|397779567|ref|YP_006544040.1| - 0.66 9.6 7.4 0.2 11.3 3.1 1.7 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain Rhomboid PF01694.17 gi|397779569|ref|YP_006544041.1| - 0.23 11.4 15.9 0.43 10.6 11.0 1.4 1 1 0 1 1 1 0 Rhomboid family DUF21 PF01595.15 gi|397779569|ref|YP_006544041.1| - 0.62 9.3 6.6 1 8.6 4.6 1.4 1 1 0 1 1 1 0 Domain of unknown function DUF21 MgtE PF01769.11 gi|397779569|ref|YP_006544041.1| - 1 9.6 5.5 1 9.6 0.6 2.0 1 1 1 2 2 2 0 Divalent cation transporter Vma12 PF11712.3 gi|397779569|ref|YP_006544041.1| - 1.6 8.3 4.4 2.6 7.7 3.1 1.3 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase MtrG PF04210.8 gi|397779569|ref|YP_006544041.1| - 3.9 7.2 7.3 9.3 6.0 0.2 2.5 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF161 PF02588.10 gi|397779569|ref|YP_006544041.1| - 4.6 7.6 13.2 5.9 7.2 9.1 1.2 1 0 0 1 1 1 0 Uncharacterized BCR, YitT family COG1284 DUF883 PF05957.8 gi|397779570|ref|YP_006544043.1| - 0.0018 18.6 0.6 0.0035 17.7 0.2 1.6 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) NPV_P10 PF05531.7 gi|397779570|ref|YP_006544043.1| - 0.041 14.1 3.0 0.083 13.1 1.0 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF2959 PF11172.3 gi|397779570|ref|YP_006544043.1| - 0.051 13.3 0.8 0.15 11.7 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2959) Apolipoprotein PF01442.13 gi|397779570|ref|YP_006544043.1| - 0.087 12.3 0.4 0.13 11.7 0.2 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Defensin_propep PF00879.13 gi|397779570|ref|YP_006544043.1| - 0.11 12.5 1.0 0.39 10.6 0.1 2.1 2 0 0 2 2 2 0 Defensin propeptide Med10 PF09748.4 gi|397779570|ref|YP_006544043.1| - 0.11 12.3 0.4 0.36 10.6 0.3 1.8 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex Spectrin PF00435.16 gi|397779570|ref|YP_006544043.1| - 0.14 12.4 0.4 0.3 11.3 0.1 1.7 2 0 0 2 2 2 0 Spectrin repeat IncA PF04156.9 gi|397779570|ref|YP_006544043.1| - 0.78 9.3 4.7 21 4.6 3.2 2.2 1 1 0 1 1 1 0 IncA protein DZR PF12773.2 gi|397779572|ref|YP_006544045.1| - 0.00019 21.1 5.3 0.0066 16.2 3.7 2.3 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|397779572|ref|YP_006544045.1| - 0.00035 19.6 12.8 0.001 18.2 2.0 3.1 3 0 0 3 3 3 2 zinc-ribbon domain GRAM PF02893.15 gi|397779572|ref|YP_006544045.1| - 0.022 14.2 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 GRAM domain zf-TFIIB PF13453.1 gi|397779572|ref|YP_006544045.1| - 0.091 11.9 10.4 0.1 11.8 0.3 3.4 3 0 0 3 3 3 0 Transcription factor zinc-finger zf-IS66 PF13005.2 gi|397779572|ref|YP_006544045.1| - 0.18 11.8 7.7 4.5 7.3 0.0 4.0 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-NADH-PPase PF09297.6 gi|397779572|ref|YP_006544045.1| - 0.3 10.6 18.1 2.6 7.6 4.2 4.2 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|397779572|ref|YP_006544045.1| - 3.4 7.2 17.1 1.9 8.1 5.4 3.2 3 1 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|397779572|ref|YP_006544045.1| - 7.7 6.2 8.0 15 5.3 0.3 3.3 1 1 2 3 3 3 0 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.9 gi|397779572|ref|YP_006544045.1| - 9.7 5.7 8.2 12 5.5 0.0 3.1 4 0 0 4 4 4 0 Rad50 zinc hook motif zf-C3HC4_3 PF13920.1 gi|397779572|ref|YP_006544045.1| - 9.8 5.9 7.4 0.59 9.8 0.3 2.4 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) HD_assoc PF13286.1 gi|397779573|ref|YP_006544046.1| - 4.5e-11 42.8 0.6 9.4e-11 41.8 0.4 1.6 1 0 0 1 1 1 1 Phosphohydrolase-associated domain HD PF01966.17 gi|397779573|ref|YP_006544046.1| - 2.2e-09 37.3 0.1 4.6e-09 36.3 0.0 1.6 1 0 0 1 1 1 1 HD domain Cag12 PF13117.1 gi|397779574|ref|YP_006544047.1| - 0.052 13.4 0.0 0.06 13.2 0.0 1.0 1 0 0 1 1 1 0 Cag pathogenicity island protein Cag12 Abhydrolase_6 PF12697.2 gi|397779575|ref|YP_006544048.1| - 2.5e-06 27.5 0.1 3.1e-06 27.2 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family LCAT PF02450.10 gi|397779575|ref|YP_006544048.1| - 0.0083 15.1 0.0 0.011 14.7 0.0 1.1 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase PGAP1 PF07819.8 gi|397779575|ref|YP_006544048.1| - 0.0094 15.5 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 PGAP1-like protein Lipase_2 PF01674.13 gi|397779575|ref|YP_006544048.1| - 0.029 13.6 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 Lipase (class 2) DUF900 PF05990.7 gi|397779575|ref|YP_006544048.1| - 0.034 13.4 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) Abhydrolase_5 PF12695.2 gi|397779575|ref|YP_006544048.1| - 0.034 13.9 0.0 0.055 13.2 0.0 1.5 1 1 0 1 1 1 0 Alpha/beta hydrolase family DUF915 PF06028.6 gi|397779575|ref|YP_006544048.1| - 0.035 13.2 0.0 2.1 7.3 0.0 2.1 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) Abhydrolase_1 PF00561.15 gi|397779575|ref|YP_006544048.1| - 0.056 12.9 0.0 0.057 12.9 0.0 1.2 1 0 0 1 1 1 0 alpha/beta hydrolase fold Sm_multidrug_ex PF06695.6 gi|397779577|ref|YP_006544050.1| - 0.00067 19.8 6.7 0.00074 19.6 3.8 1.7 1 1 1 2 2 2 1 Putative small multi-drug export protein DUF4231 PF14015.1 gi|397779577|ref|YP_006544050.1| - 1.2 9.1 9.4 0.17 11.8 2.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) HTH_20 PF12840.2 gi|397779578|ref|YP_006544051.1| - 4.9e-14 51.8 0.9 5.1e-06 26.1 0.4 2.4 2 1 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|397779578|ref|YP_006544051.1| - 1.6e-12 46.6 0.0 3.8e-08 32.5 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|397779578|ref|YP_006544051.1| - 7.1e-08 32.0 0.6 0.00013 21.5 0.4 2.8 2 1 0 2 2 2 2 MarR family HTH_5 PF01022.15 gi|397779578|ref|YP_006544051.1| - 1.5e-07 30.9 0.0 0.00095 18.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|397779578|ref|YP_006544051.1| - 1.9e-05 24.2 0.0 0.00043 19.9 0.0 2.2 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.14 gi|397779578|ref|YP_006544051.1| - 0.00017 21.4 0.0 0.00035 20.4 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|397779578|ref|YP_006544051.1| - 0.00022 20.8 0.0 0.0012 18.5 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|397779578|ref|YP_006544051.1| - 0.00026 20.9 0.0 0.57 10.2 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|397779578|ref|YP_006544051.1| - 0.00028 20.3 0.0 0.11 12.1 0.0 2.4 2 0 0 2 2 2 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|397779578|ref|YP_006544051.1| - 0.0011 18.4 0.0 0.0068 15.9 0.0 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|397779578|ref|YP_006544051.1| - 0.0051 16.3 0.5 1.4 8.5 0.2 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_12 PF08461.5 gi|397779578|ref|YP_006544051.1| - 0.021 14.5 0.6 2.3 8.0 0.0 2.7 2 1 1 3 3 3 0 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|397779578|ref|YP_006544051.1| - 0.023 15.0 0.0 0.46 10.8 0.1 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|397779578|ref|YP_006544051.1| - 0.029 14.4 0.0 0.05 13.6 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.7 gi|397779578|ref|YP_006544051.1| - 0.043 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.1 gi|397779578|ref|YP_006544051.1| - 0.061 13.1 0.0 0.3 10.9 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|397779578|ref|YP_006544051.1| - 0.063 13.4 0.0 5.5 7.1 0.0 2.5 2 0 0 2 2 2 0 Transcriptional regulator GntR PF00392.16 gi|397779578|ref|YP_006544051.1| - 0.082 12.3 0.0 0.54 9.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family TetR_N PF00440.18 gi|397779578|ref|YP_006544051.1| - 0.12 11.9 0.0 16 5.1 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family TFIIE_alpha PF02002.12 gi|397779578|ref|YP_006544051.1| - 0.18 11.3 0.0 1.8 8.0 0.0 2.1 2 0 0 2 2 2 0 TFIIE alpha subunit ABC_tran PF00005.22 gi|397779580|ref|YP_006544053.1| - 2.4e-30 105.6 0.0 3.5e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397779580|ref|YP_006544053.1| - 3.5e-12 46.8 0.0 5e-08 33.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|397779580|ref|YP_006544053.1| - 0.00023 20.3 0.0 0.00095 18.3 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|397779580|ref|YP_006544053.1| - 0.0019 17.6 0.1 0.0038 16.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|397779580|ref|YP_006544053.1| - 0.014 15.7 0.3 0.023 15.0 0.2 1.2 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|397779580|ref|YP_006544053.1| - 0.034 13.6 0.4 1.2 8.5 0.1 2.8 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|397779580|ref|YP_006544053.1| - 0.056 12.8 0.0 0.17 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|397779580|ref|YP_006544053.1| - 0.13 12.2 0.0 0.31 10.9 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|397779580|ref|YP_006544053.1| - 0.17 11.3 0.2 0.52 9.6 0.1 1.7 1 1 0 2 2 2 0 AAA-like domain Sm_multidrug_ex PF06695.6 gi|397779581|ref|YP_006544054.1| - 0.00031 20.8 5.3 0.00044 20.3 3.7 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein GPI2 PF06432.6 gi|397779581|ref|YP_006544054.1| - 2.5 7.3 6.1 0.2 10.9 0.2 1.8 2 0 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase ABC2_membrane_2 PF12679.2 gi|397779581|ref|YP_006544054.1| - 4.6 6.0 14.4 0.073 11.9 2.9 2.4 1 1 1 2 2 2 0 ABC-2 family transporter protein HisKA_3 PF07730.8 gi|397779582|ref|YP_006544055.1| - 0.012 15.9 0.6 2.6 8.4 0.1 2.1 2 0 0 2 2 2 0 Histidine kinase AATF-Che1 PF13339.1 gi|397779582|ref|YP_006544055.1| - 0.12 12.5 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor Ribosomal_S30AE PF02482.14 gi|397779582|ref|YP_006544055.1| - 0.51 10.8 2.4 5.9 7.4 1.7 2.3 1 1 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein Fer4_6 PF12837.2 gi|397779583|ref|YP_006544056.1| - 6.5e-09 35.2 11.0 3.7e-06 26.5 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|397779583|ref|YP_006544056.1| - 3.4e-08 32.7 14.4 2.4e-06 26.9 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397779583|ref|YP_006544056.1| - 2.9e-07 30.4 0.7 0.00092 19.1 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397779583|ref|YP_006544056.1| - 7e-07 29.8 8.8 3e-06 27.8 6.1 1.9 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|397779583|ref|YP_006544056.1| - 2.2e-06 27.9 9.0 4.3e-06 27.0 6.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397779583|ref|YP_006544056.1| - 2.6e-06 27.1 9.2 1.4e-05 24.7 6.4 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397779583|ref|YP_006544056.1| - 3.7e-05 23.8 21.5 0.00087 19.5 7.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397779583|ref|YP_006544056.1| - 0.00012 22.3 5.1 0.035 14.4 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397779583|ref|YP_006544056.1| - 0.00017 21.6 9.9 0.0015 18.6 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|397779583|ref|YP_006544056.1| - 0.00023 20.8 13.2 0.004 16.9 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|397779583|ref|YP_006544056.1| - 0.0004 20.7 6.3 0.021 15.2 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|397779583|ref|YP_006544056.1| - 0.0005 20.4 17.3 0.027 15.0 4.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|397779583|ref|YP_006544056.1| - 0.013 15.3 10.3 0.046 13.5 7.2 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Dehalogenase PF13486.1 gi|397779583|ref|YP_006544056.1| - 0.028 13.8 0.0 0.039 13.4 0.0 1.2 1 0 0 1 1 1 0 Reductive dehalogenase subunit TM_helix PF05552.7 gi|397779584|ref|YP_006544057.1| - 3e-21 74.8 16.8 1.6e-16 59.7 1.9 3.4 3 1 1 4 4 4 2 Conserved TM helix Colicin_V PF02674.11 gi|397779584|ref|YP_006544057.1| - 0.0093 15.8 0.3 0.0093 15.8 0.2 2.9 2 1 1 3 3 3 2 Colicin V production protein MMPL PF03176.10 gi|397779585|ref|YP_006544058.1| - 1.6e-43 148.7 36.5 2.5e-23 82.3 5.5 2.8 3 0 0 3 3 3 2 MMPL family Sterol-sensing PF12349.3 gi|397779585|ref|YP_006544058.1| - 5.5e-16 58.4 20.9 5.2e-11 42.2 4.9 3.2 2 1 1 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.14 gi|397779585|ref|YP_006544058.1| - 2.2e-11 42.0 32.6 2.2e-06 25.4 7.9 2.6 2 1 1 3 3 3 2 AcrB/AcrD/AcrF family SecD_SecF PF02355.11 gi|397779585|ref|YP_006544058.1| - 4.7e-11 42.2 39.5 3.1e-10 39.5 8.2 2.5 3 0 0 3 3 3 2 Protein export membrane protein Patched PF02460.13 gi|397779585|ref|YP_006544058.1| - 2.8e-08 32.2 26.9 3.6e-05 21.9 6.7 2.3 2 0 0 2 2 2 2 Patched family HTH_10 PF04967.7 gi|397779587|ref|YP_006544060.1| - 2e-19 68.9 0.3 3.2e-19 68.2 0.2 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|397779587|ref|YP_006544060.1| - 6.7e-05 22.1 0.1 0.00017 20.9 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|397779587|ref|YP_006544060.1| - 0.00098 18.7 0.1 0.0019 17.8 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|397779587|ref|YP_006544060.1| - 0.002 17.7 0.3 0.0082 15.7 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.11 gi|397779587|ref|YP_006544060.1| - 0.0022 17.2 0.5 0.0051 16.0 0.3 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_17 PF12728.2 gi|397779587|ref|YP_006544060.1| - 0.0029 17.8 0.0 0.0074 16.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|397779587|ref|YP_006544060.1| - 0.011 15.3 0.1 0.024 14.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.7 gi|397779587|ref|YP_006544060.1| - 0.026 13.9 1.5 0.43 10.0 1.0 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|397779587|ref|YP_006544060.1| - 0.045 13.2 1.2 0.16 11.5 0.3 2.3 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_3 PF01381.17 gi|397779587|ref|YP_006544060.1| - 0.12 12.2 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_IclR PF09339.5 gi|397779587|ref|YP_006544060.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain SpoIIID PF12116.3 gi|397779587|ref|YP_006544060.1| - 0.14 12.1 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D TrmB PF01978.14 gi|397779588|ref|YP_006544061.1| - 1.4e-20 72.7 0.0 2.6e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|397779588|ref|YP_006544061.1| - 0.026 14.1 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 MarR family PadR PF03551.9 gi|397779588|ref|YP_006544061.1| - 0.034 13.9 0.0 0.17 11.6 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_IclR PF09339.5 gi|397779588|ref|YP_006544061.1| - 0.038 13.5 0.0 0.082 12.5 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|397779588|ref|YP_006544061.1| - 0.077 13.1 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Serpin PF00079.15 gi|590000604|ref|YP_006544062.2| - 1.8e-120 402.4 0.0 2.1e-120 402.3 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) FMN_red PF03358.10 gi|397779590|ref|YP_006544063.1| - 6.4e-05 22.4 0.0 0.0001 21.8 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|397779590|ref|YP_006544063.1| - 0.00064 19.2 0.0 0.00084 18.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold GTP_EFTU PF00009.22 gi|397779592|ref|YP_006544065.1| - 4.1e-33 114.3 0.0 8.7e-33 113.3 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|397779592|ref|YP_006544065.1| - 1.2e-19 70.2 0.3 3.4e-19 68.7 0.2 1.8 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|397779592|ref|YP_006544065.1| - 5.6e-14 51.5 0.7 1.8e-13 49.9 0.5 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|397779592|ref|YP_006544065.1| - 1e-09 38.3 5.8 3.8e-09 36.5 0.1 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|397779592|ref|YP_006544065.1| - 2.4e-06 27.4 0.0 6.4e-06 26.1 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|397779592|ref|YP_006544065.1| - 0.0018 18.7 0.0 0.0036 17.8 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|397779592|ref|YP_006544065.1| - 0.002 18.0 0.1 0.12 12.1 0.0 2.5 2 0 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.12 gi|397779592|ref|YP_006544065.1| - 0.0045 16.5 0.0 0.0098 15.4 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein DUF1887 PF09002.6 gi|397779592|ref|YP_006544065.1| - 0.065 11.6 0.0 7.1 4.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1887) Tir_receptor_N PF07490.6 gi|397779592|ref|YP_006544065.1| - 0.072 12.6 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus Ribosomal_S6e PF01092.14 gi|397779593|ref|YP_006544066.1| - 1.1e-31 109.0 0.1 1.2e-31 108.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GreA_GreB PF01272.14 gi|397779593|ref|YP_006544066.1| - 0.021 14.5 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Transcription elongation factor, GreA/GreB, C-term DUF2240 PF09999.4 gi|590000605|ref|YP_006544068.2| - 9.5e-44 148.3 0.0 1.1e-43 148.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF2487 PF10673.4 gi|590000605|ref|YP_006544068.2| - 0.091 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2487) DUF2442 PF10387.4 gi|397779596|ref|YP_006544069.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2442) 5_nucleotid_C PF02872.13 gi|397779597|ref|YP_006544070.1| - 4.7e-23 81.9 0.0 7.8e-23 81.1 0.0 1.2 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|397779597|ref|YP_006544070.1| - 0.0031 16.9 0.2 0.024 14.0 0.1 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Ribosomal_S8e PF01201.17 gi|397779598|ref|YP_006544071.1| - 8e-40 136.0 2.0 8.8e-40 135.9 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e cobW PF02492.14 gi|397779599|ref|YP_006544072.1| - 1.9e-32 112.1 0.0 2.3e-32 111.8 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|397779599|ref|YP_006544072.1| - 2.4e-08 33.0 0.3 0.0019 17.0 0.0 2.1 2 0 0 2 2 2 2 ArgK protein SRP54 PF00448.17 gi|397779599|ref|YP_006544072.1| - 0.00015 21.2 0.0 0.00026 20.5 0.0 1.5 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|397779599|ref|YP_006544072.1| - 0.00019 21.1 0.0 0.0004 20.0 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|397779599|ref|YP_006544072.1| - 0.00022 20.7 0.0 0.0044 16.5 0.0 2.1 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation TrwB_AAD_bind PF10412.4 gi|397779599|ref|YP_006544072.1| - 0.005 15.5 0.0 0.0072 14.9 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain GTP_EFTU PF00009.22 gi|397779599|ref|YP_006544072.1| - 0.017 14.5 0.0 0.74 9.2 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_16 PF13191.1 gi|397779599|ref|YP_006544072.1| - 0.018 14.9 0.0 0.028 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain LpxK PF02606.9 gi|397779599|ref|YP_006544072.1| - 0.12 11.2 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase SRP19 PF01922.12 gi|590000606|ref|YP_009001391.1| - 1.6e-21 76.7 0.1 1.7e-21 76.5 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein PHP PF02811.14 gi|590000607|ref|YP_006544073.2| - 4.2e-14 52.7 0.1 4.6e-13 49.3 0.0 1.8 1 1 0 2 2 2 1 PHP domain OMPdecase PF00215.19 gi|590000607|ref|YP_006544073.2| - 0.029 13.7 0.0 0.065 12.6 0.0 1.6 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family TFIIB PF00382.14 gi|397779601|ref|YP_006544074.1| - 7.2e-46 153.8 1.3 9.4e-24 83.0 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|397779601|ref|YP_006544074.1| - 6.5e-19 66.9 0.4 1.7e-18 65.6 0.3 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|397779601|ref|YP_006544074.1| - 2.2e-05 23.6 0.8 0.0031 16.7 0.2 3.1 2 0 0 2 2 2 1 Sigma-70, region 4 GFA PF04828.9 gi|397779601|ref|YP_006544074.1| - 0.0012 18.6 0.3 0.0057 16.5 0.1 2.0 2 0 0 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|397779601|ref|YP_006544074.1| - 0.0041 16.2 0.1 0.0041 16.2 0.1 1.8 2 0 0 2 2 1 1 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|397779601|ref|YP_006544074.1| - 0.005 16.3 0.6 0.005 16.3 0.4 1.8 2 0 0 2 2 2 1 Ribosomal protein S27 HTH_AsnC-type PF13404.1 gi|397779601|ref|YP_006544074.1| - 0.006 16.1 0.6 0.034 13.6 0.1 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|397779601|ref|YP_006544074.1| - 0.013 15.1 0.7 0.027 14.1 0.5 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF3752 PF12572.3 gi|397779601|ref|YP_006544074.1| - 0.015 15.4 1.9 0.03 14.4 0.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3752) RPA_interact_C PF14768.1 gi|397779601|ref|YP_006544074.1| - 0.018 15.4 0.4 1.5 9.2 0.1 2.5 2 0 0 2 2 2 0 Replication protein A interacting C-terminal HTH_24 PF13412.1 gi|397779601|ref|YP_006544074.1| - 0.028 13.8 0.1 0.11 11.8 0.1 2.0 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding Cyclin_C PF02984.14 gi|397779601|ref|YP_006544074.1| - 0.046 13.6 0.3 12 5.9 0.0 3.0 3 0 0 3 3 3 0 Cyclin, C-terminal domain DZR PF12773.2 gi|397779601|ref|YP_006544074.1| - 0.051 13.4 2.0 0.14 12.0 0.4 2.2 2 0 0 2 2 2 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|397779601|ref|YP_006544074.1| - 0.055 12.9 1.7 0.24 10.9 1.1 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|397779601|ref|YP_006544074.1| - 0.057 13.7 0.9 0.41 10.9 0.2 2.3 2 0 0 2 2 2 0 Restriction alleviation protein Lar UPF0253 PF06786.7 gi|397779601|ref|YP_006544074.1| - 0.11 12.5 0.6 0.77 9.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) FYDLN_acid PF09538.5 gi|397779601|ref|YP_006544074.1| - 0.31 11.6 1.9 0.42 11.2 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) Elf1 PF05129.8 gi|397779601|ref|YP_006544074.1| - 0.35 10.6 3.9 0.28 10.9 1.1 2.0 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like HTH_31 PF13560.1 gi|397779601|ref|YP_006544074.1| - 0.46 10.7 9.9 2.3 8.4 0.1 4.3 4 2 0 4 4 4 0 Helix-turn-helix domain zf-CHY PF05495.7 gi|397779601|ref|YP_006544074.1| - 0.47 10.6 2.9 0.66 10.1 0.9 1.9 2 0 0 2 2 2 0 CHY zinc finger Methyltransf_13 PF08421.6 gi|397779601|ref|YP_006544074.1| - 1.1 8.7 4.1 11 5.6 0.1 3.0 2 1 1 3 3 3 0 Putative zinc binding domain HTH_3 PF01381.17 gi|397779601|ref|YP_006544074.1| - 1.5 8.7 6.2 1.7 8.5 0.0 3.6 5 0 0 5 5 4 0 Helix-turn-helix HTH_23 PF13384.1 gi|397779601|ref|YP_006544074.1| - 5.4 6.8 7.1 0.93 9.2 0.1 3.2 3 1 0 3 3 3 0 Homeodomain-like domain WD40 PF00400.27 gi|397779604|ref|YP_006544077.1| - 0.14 12.0 0.0 11 6.1 0.0 2.1 2 0 0 2 2 2 0 WD domain, G-beta repeat C_GCAxxG_C_C PF09719.5 gi|397779605|ref|YP_006544078.1| - 2.8e-32 111.0 0.1 3.2e-32 110.8 0.1 1.1 1 0 0 1 1 1 1 Putative redox-active protein (C_GCAxxG_C_C) Acyl_transf_3 PF01757.17 gi|397779606|ref|YP_006544079.1| - 4.7e-18 65.1 33.2 8.9e-18 64.2 23.0 1.4 1 1 0 1 1 1 1 Acyltransferase family DUF3262 PF11660.3 gi|397779606|ref|YP_006544079.1| - 2.7 8.1 7.1 16 5.6 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3262) DUF2324 PF10086.4 gi|397779607|ref|YP_006544080.1| - 3.9e-50 170.1 14.3 5.1e-50 169.7 9.9 1.1 1 0 0 1 1 1 1 Putative membrane peptidase family (DUF2324) NADHdh-2_N PF12155.3 gi|397779607|ref|YP_006544080.1| - 0.93 9.7 7.2 0.15 12.2 1.6 2.2 2 0 0 2 2 2 0 NADH dehydrogenase subunit 2 N-terminal ATPase_gene1 PF09527.5 gi|397779607|ref|YP_006544080.1| - 1.7 8.5 14.9 1.6 8.5 1.1 3.8 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) AIRS PF00586.19 gi|397779608|ref|YP_006544081.1| - 6e-16 58.4 1.5 9.7e-16 57.8 1.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|397779608|ref|YP_006544081.1| - 3.3e-06 27.1 0.2 1.6e-05 24.9 0.1 2.3 2 1 0 2 2 2 1 AIR synthase related protein, C-terminal domain DUF460 PF04312.8 gi|397779609|ref|YP_006544082.1| - 3.3e-49 165.9 0.0 6.6e-49 164.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) HAUS5 PF14817.1 gi|397779609|ref|YP_006544082.1| - 0.0036 15.9 7.1 0.0055 15.3 4.9 1.2 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 5 DUF641 PF04859.7 gi|397779609|ref|YP_006544082.1| - 0.01 15.5 8.3 0.27 10.9 0.3 3.3 2 2 1 3 3 3 0 Plant protein of unknown function (DUF641) OmpH PF03938.9 gi|397779609|ref|YP_006544082.1| - 0.071 13.0 3.8 0.15 11.9 1.9 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) DUF342 PF03961.8 gi|397779609|ref|YP_006544082.1| - 0.2 10.0 1.3 0.36 9.1 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF826 PF05696.6 gi|397779609|ref|YP_006544082.1| - 1.1 9.4 4.0 0.8 9.8 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF826) TMF_DNA_bd PF12329.3 gi|397779609|ref|YP_006544082.1| - 1.8 8.4 5.9 7.5 6.4 0.1 2.8 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding SlyX PF04102.7 gi|397779609|ref|YP_006544082.1| - 2.7 8.4 6.0 27 5.2 0.2 2.9 1 1 1 2 2 2 0 SlyX TBPIP PF07106.8 gi|397779609|ref|YP_006544082.1| - 7.3 6.1 8.4 2.4 7.7 1.5 2.6 2 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) RIO1 PF01163.17 gi|397779610|ref|YP_006544083.1| - 7.7e-45 152.5 0.0 1.1e-44 152.0 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|397779610|ref|YP_006544083.1| - 6e-24 83.9 0.3 9.4e-24 83.2 0.2 1.3 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|397779610|ref|YP_006544083.1| - 1.2e-06 28.5 3.2 3.4e-05 23.6 2.2 2.8 1 1 0 1 1 1 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|397779610|ref|YP_006544083.1| - 0.0026 16.8 0.0 0.0062 15.6 0.0 1.6 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family WaaY PF06176.6 gi|397779610|ref|YP_006544083.1| - 0.0065 15.7 0.0 0.009 15.2 0.0 1.1 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase PF00069.20 gi|397779610|ref|YP_006544083.1| - 0.017 14.2 0.0 0.027 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain ATP_bind_3 PF01171.15 gi|397779611|ref|YP_006544084.1| - 1.6e-08 34.2 0.0 3.6e-08 33.1 0.0 1.5 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|397779611|ref|YP_006544084.1| - 9.2e-07 27.7 0.0 1.3e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|397779611|ref|YP_006544084.1| - 3.8e-06 26.6 0.0 5.9e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase GPI PF06560.6 gi|397779612|ref|YP_006544085.1| - 3.2e-43 146.8 0.1 4.2e-43 146.4 0.1 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|397779612|ref|YP_006544085.1| - 0.1 12.0 0.2 0.22 11.0 0.1 1.6 1 0 0 1 1 1 0 Cupin domain CARDB PF07705.6 gi|397779613|ref|YP_006544086.1| - 3.1e-16 59.2 4.7 1.2e-07 31.7 0.1 3.4 3 0 0 3 3 3 3 CARDB NPCBM_assoc PF10633.4 gi|397779613|ref|YP_006544086.1| - 2.1e-15 56.5 4.3 8.4e-05 22.5 0.5 4.0 4 0 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase A2M_N PF01835.14 gi|397779613|ref|YP_006544086.1| - 0.027 14.7 0.1 2.5 8.4 0.0 2.7 2 0 0 2 2 2 0 MG2 domain He_PIG PF05345.7 gi|397779613|ref|YP_006544086.1| - 0.073 13.1 2.4 2.2 8.3 0.2 3.1 2 0 0 2 2 2 0 Putative Ig domain TrmB PF01978.14 gi|397779614|ref|YP_006544087.1| - 2e-20 72.2 0.0 3.2e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|397779614|ref|YP_006544087.1| - 0.0054 16.4 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|397779614|ref|YP_006544087.1| - 0.0091 15.5 0.2 0.037 13.6 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|397779614|ref|YP_006544087.1| - 0.0095 15.7 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC PadR PF03551.9 gi|397779614|ref|YP_006544087.1| - 0.02 14.6 0.0 0.049 13.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Regulator_TrmB PF11495.3 gi|397779614|ref|YP_006544087.1| - 0.053 12.4 0.0 0.078 11.9 0.0 1.2 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB DUF128 PF01995.11 gi|397779615|ref|YP_006544088.1| - 9.2e-83 276.7 0.0 1e-82 276.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_20 PF12840.2 gi|397779617|ref|YP_006544090.1| - 2.1e-06 27.4 0.0 6e-06 25.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|397779617|ref|YP_006544090.1| - 1.3e-05 25.4 0.0 2.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|397779617|ref|YP_006544090.1| - 6.2e-05 22.5 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.14 gi|397779617|ref|YP_006544090.1| - 9.2e-05 22.0 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|397779617|ref|YP_006544090.1| - 9.3e-05 22.3 0.0 0.00013 21.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|397779617|ref|YP_006544090.1| - 0.00016 21.3 0.0 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|397779617|ref|YP_006544090.1| - 0.00071 19.3 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family GntR PF00392.16 gi|397779617|ref|YP_006544090.1| - 0.001 18.4 0.1 0.0038 16.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Replic_Relax PF13814.1 gi|397779617|ref|YP_006544090.1| - 0.0051 16.6 0.0 0.007 16.2 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation MarR_2 PF12802.2 gi|397779617|ref|YP_006544090.1| - 0.013 15.1 0.0 0.04 13.5 0.0 1.9 2 0 0 2 2 2 0 MarR family ERAP1_C PF11838.3 gi|397779617|ref|YP_006544090.1| - 0.088 12.0 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 ERAP1-like C-terminal domain DUF3467 PF11950.3 gi|397779618|ref|YP_006544091.1| - 0.0093 15.9 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) Pyr_redox_2 PF07992.9 gi|397779620|ref|YP_006544093.1| - 4.2e-31 108.3 0.3 1.5e-30 106.5 0.2 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|397779620|ref|YP_006544093.1| - 2e-14 53.7 6.7 7.1e-11 42.3 0.9 4.0 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|397779620|ref|YP_006544093.1| - 1.7e-13 51.1 0.0 8.2e-11 42.3 0.0 2.5 2 1 1 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|397779620|ref|YP_006544093.1| - 5.7e-07 28.3 3.0 0.00019 20.0 1.4 2.9 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.19 gi|397779620|ref|YP_006544093.1| - 5.4e-06 25.5 22.3 0.00025 20.0 0.8 3.7 2 1 1 4 4 4 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|397779620|ref|YP_006544093.1| - 8.8e-06 24.8 10.2 0.012 14.5 1.8 4.0 3 2 1 4 4 4 3 Glucose inhibited division protein A Pyr_redox_dim PF02852.17 gi|397779620|ref|YP_006544093.1| - 1.1e-05 25.4 0.0 2.5e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_9 PF13454.1 gi|397779620|ref|YP_006544093.1| - 5.4e-05 23.0 4.5 0.16 11.7 0.0 3.7 2 1 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_7 PF13241.1 gi|397779620|ref|YP_006544093.1| - 5.5e-05 23.3 1.5 0.07 13.3 0.1 2.6 2 1 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_2 PF00890.19 gi|397779620|ref|YP_006544093.1| - 8.8e-05 21.5 13.5 0.017 13.9 1.6 3.7 2 1 1 4 4 4 3 FAD binding domain FAD_oxidored PF12831.2 gi|397779620|ref|YP_006544093.1| - 0.00085 18.5 0.6 0.0017 17.5 0.4 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|397779620|ref|YP_006544093.1| - 0.0038 16.3 1.8 0.0038 16.3 1.3 2.3 2 1 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|397779620|ref|YP_006544093.1| - 0.0093 15.9 0.9 0.0093 15.9 0.7 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|397779620|ref|YP_006544093.1| - 0.01 14.4 0.2 0.01 14.4 0.1 2.2 3 0 0 3 3 3 0 Tryptophan halogenase K_oxygenase PF13434.1 gi|397779620|ref|YP_006544093.1| - 0.016 14.1 0.0 0.074 11.9 0.0 1.9 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|397779620|ref|YP_006544093.1| - 0.039 12.8 6.9 0.14 11.0 0.8 2.9 3 1 0 3 3 3 0 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|397779620|ref|YP_006544093.1| - 0.046 13.3 2.3 4.7 6.8 0.1 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|397779620|ref|YP_006544093.1| - 0.1 12.1 0.7 0.99 8.9 0.1 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|397779620|ref|YP_006544093.1| - 0.12 11.4 0.3 0.86 8.7 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DHH PF01368.15 gi|397779622|ref|YP_006544095.1| - 7.6e-37 126.1 0.0 1.2e-36 125.4 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA2 PF02833.9 gi|397779622|ref|YP_006544095.1| - 8.8e-24 84.1 0.0 1.4e-23 83.4 0.0 1.4 1 0 0 1 1 1 1 DHHA2 domain DRTGG PF07085.7 gi|397779622|ref|YP_006544095.1| - 3.2e-16 58.8 0.7 6e-16 57.9 0.5 1.5 1 0 0 1 1 1 1 DRTGG domain CBS PF00571.23 gi|397779622|ref|YP_006544095.1| - 1.6e-11 43.7 1.5 7.9e-05 22.3 0.3 3.0 2 0 0 2 2 2 2 CBS domain VPEP PF07589.6 gi|397779622|ref|YP_006544095.1| - 4 7.4 6.5 12 5.9 0.1 2.5 2 0 0 2 2 2 0 PEP-CTERM motif CARDB PF07705.6 gi|397779623|ref|YP_006544096.1| - 1.1e-06 28.5 0.0 0.15 12.1 0.0 3.1 3 0 0 3 3 3 2 CARDB DUF11 PF01345.13 gi|397779623|ref|YP_006544096.1| - 0.51 10.4 13.8 0.31 11.1 2.2 3.5 3 0 0 3 3 3 0 Domain of unknown function DUF11 ABC_tran PF00005.22 gi|397779624|ref|YP_006544097.1| - 1.1e-33 116.3 0.0 1.6e-33 115.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397779624|ref|YP_006544097.1| - 1.5e-11 44.7 0.0 4.6e-06 26.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397779624|ref|YP_006544097.1| - 4.7e-05 22.7 0.0 0.13 11.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|397779624|ref|YP_006544097.1| - 7.5e-05 22.3 0.1 0.003 17.0 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|397779624|ref|YP_006544097.1| - 0.00013 21.4 0.0 0.00024 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|397779624|ref|YP_006544097.1| - 0.00021 21.3 0.2 0.0005 20.1 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|397779624|ref|YP_006544097.1| - 0.0013 17.9 0.0 0.0021 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|397779624|ref|YP_006544097.1| - 0.0017 17.7 0.3 0.0065 15.8 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|397779624|ref|YP_006544097.1| - 0.0017 18.6 0.1 0.078 13.2 0.1 2.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|397779624|ref|YP_006544097.1| - 0.0022 17.8 0.2 0.021 14.7 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|397779624|ref|YP_006544097.1| - 0.0043 17.8 0.2 0.0055 17.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|397779624|ref|YP_006544097.1| - 0.0057 16.3 1.0 2.9 7.7 0.0 3.0 3 1 0 3 3 3 1 Part of AAA domain AAA_22 PF13401.1 gi|397779624|ref|YP_006544097.1| - 0.0087 16.1 0.1 0.054 13.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|397779624|ref|YP_006544097.1| - 0.0093 15.9 0.6 0.61 10.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|397779624|ref|YP_006544097.1| - 0.028 13.9 0.0 0.71 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|397779624|ref|YP_006544097.1| - 0.035 13.9 0.7 0.081 12.8 0.5 2.0 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|397779624|ref|YP_006544097.1| - 0.054 13.4 0.1 0.062 13.2 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|397779624|ref|YP_006544097.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|397779624|ref|YP_006544097.1| - 0.13 11.9 0.1 0.61 9.7 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.1 gi|397779624|ref|YP_006544097.1| - 0.17 12.1 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain MacB_PCD PF12704.2 gi|397779625|ref|YP_006544098.1| - 1.3e-31 110.0 0.1 1.3e-31 110.0 0.1 2.2 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|397779625|ref|YP_006544098.1| - 3.5e-18 65.4 13.1 3.5e-18 65.4 9.1 2.3 2 0 0 2 2 2 2 FtsX-like permease family MacB_PCD PF12704.2 gi|397779626|ref|YP_006544099.1| - 3.7e-27 95.4 0.3 3.7e-27 95.4 0.2 2.3 3 1 1 4 4 4 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|397779626|ref|YP_006544099.1| - 7.9e-20 70.8 15.6 1.7e-19 69.7 7.6 2.2 2 0 0 2 2 2 1 FtsX-like permease family YjgP_YjgQ PF03739.9 gi|397779626|ref|YP_006544099.1| - 1.4 7.6 5.0 1.1 7.9 2.4 1.7 1 1 0 1 1 1 0 Predicted permease YjgP/YjgQ family DUF3303 PF11746.3 gi|397779627|ref|YP_006544100.1| - 2.7e-06 27.6 0.0 3.2e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) GYD PF08734.6 gi|397779627|ref|YP_006544100.1| - 0.0038 16.9 0.0 0.0042 16.7 0.0 1.2 1 0 0 1 1 1 1 GYD domain MarC PF01914.12 gi|397779629|ref|YP_006544102.1| - 3.4e-45 153.6 20.2 3.9e-45 153.4 14.0 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.11 gi|397779629|ref|YP_006544102.1| - 0.00089 18.7 2.8 0.00089 18.7 1.9 2.4 2 1 0 2 2 2 2 Integral membrane protein TerC family PAP2 PF01569.16 gi|397779630|ref|YP_006544103.1| - 6.7e-22 77.5 10.4 6.7e-22 77.5 7.2 3.4 3 1 1 4 4 4 1 PAP2 superfamily PAP2_C PF14360.1 gi|397779630|ref|YP_006544103.1| - 0.0047 17.1 1.4 0.0087 16.3 0.1 2.1 2 0 0 2 2 2 1 PAP2 superfamily C-terminal PAP2_3 PF14378.1 gi|397779630|ref|YP_006544103.1| - 0.03 13.8 2.3 0.048 13.1 1.1 1.7 1 1 0 1 1 1 0 PAP2 superfamily NfeD PF01957.13 gi|397779631|ref|YP_006544104.1| - 7.1e-21 74.8 8.6 8.1e-21 74.6 5.9 1.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding TcpE PF12648.2 gi|397779631|ref|YP_006544104.1| - 0.23 11.6 2.2 0.37 10.9 1.5 1.4 1 1 0 1 1 1 0 TcpE family DUF4131 PF13567.1 gi|397779631|ref|YP_006544104.1| - 5 6.4 7.5 16 4.8 5.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Band_7 PF01145.20 gi|397779632|ref|YP_006544105.1| - 3.2e-32 111.8 3.1 7.2e-32 110.7 2.2 1.6 1 0 0 1 1 1 1 SPFH domain / Band 7 family DUF3628 PF12300.3 gi|397779632|ref|YP_006544105.1| - 0.2 11.7 5.4 0.066 13.2 1.9 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3628) PRC PF05239.11 gi|397779633|ref|YP_006544106.1| - 5.3e-13 48.6 0.6 6.5e-13 48.3 0.4 1.1 1 0 0 1 1 1 1 PRC-barrel domain Hydrolase_3 PF08282.7 gi|397779634|ref|YP_006544107.1| - 4.9e-34 118.0 0.0 1.7e-19 70.3 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|397779634|ref|YP_006544107.1| - 5.5e-11 43.2 0.4 6e-07 30.0 0.0 2.9 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|397779634|ref|YP_006544107.1| - 8e-10 38.4 0.0 2.8e-08 33.3 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|397779634|ref|YP_006544107.1| - 2.1e-08 34.5 1.8 3e-07 30.7 0.1 2.4 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|397779634|ref|YP_006544107.1| - 2.6e-05 24.5 0.3 0.02 15.1 0.0 3.0 1 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|397779634|ref|YP_006544107.1| - 0.00032 19.7 0.0 0.0023 16.8 0.0 1.9 1 1 0 1 1 1 1 Trehalose-phosphatase Hydrolase_6 PF13344.1 gi|397779634|ref|YP_006544107.1| - 0.0011 18.7 0.0 0.0067 16.2 0.0 2.0 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|397779634|ref|YP_006544107.1| - 0.0069 16.0 0.1 0.015 15.0 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Rad51 PF08423.6 gi|397779635|ref|YP_006544108.1| - 5.6e-82 274.4 0.0 6.8e-82 274.2 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|397779635|ref|YP_006544108.1| - 6.4e-14 51.7 0.0 1.1e-13 51.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain HHH_5 PF14520.1 gi|397779635|ref|YP_006544108.1| - 1.5e-13 50.6 3.5 1.7e-13 50.5 1.2 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain KaiC PF06745.8 gi|397779635|ref|YP_006544108.1| - 1.7e-11 43.6 0.0 2.4e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 KaiC HHH PF00633.18 gi|397779635|ref|YP_006544108.1| - 3.2e-08 32.8 2.4 0.00021 20.7 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif RecA PF00154.16 gi|397779635|ref|YP_006544108.1| - 2.3e-07 30.2 0.0 0.0052 15.8 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH_2 PF12826.2 gi|397779635|ref|YP_006544108.1| - 7.9e-06 25.6 0.1 2.2e-05 24.2 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|397779635|ref|YP_006544108.1| - 0.00049 19.6 0.1 0.0023 17.4 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.3 gi|397779635|ref|YP_006544108.1| - 0.00087 19.2 0.0 0.0036 17.2 0.0 2.2 1 0 0 1 1 1 1 IMS family HHH motif AAA_22 PF13401.1 gi|397779635|ref|YP_006544108.1| - 0.00091 19.3 0.1 0.0024 18.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|397779635|ref|YP_006544108.1| - 0.0013 18.5 0.0 0.0041 16.8 0.0 1.6 1 1 1 2 2 2 1 Archaeal ATPase HHH_8 PF14716.1 gi|397779635|ref|YP_006544108.1| - 0.0018 18.3 0.1 0.28 11.4 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|397779635|ref|YP_006544108.1| - 0.0031 17.3 0.0 0.0071 16.2 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus CobU PF02283.11 gi|397779635|ref|YP_006544108.1| - 0.005 16.2 1.4 0.06 12.7 0.1 2.5 2 1 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase HHH_3 PF12836.2 gi|397779635|ref|YP_006544108.1| - 0.012 15.4 0.0 1.7 8.6 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif AAA_16 PF13191.1 gi|397779635|ref|YP_006544108.1| - 0.021 14.8 0.1 0.039 13.9 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|397779635|ref|YP_006544108.1| - 0.022 14.4 0.0 0.058 13.0 0.0 1.7 1 1 0 1 1 1 0 NACHT domain Miro PF08477.8 gi|397779635|ref|YP_006544108.1| - 0.049 14.1 0.0 0.098 13.1 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein DUF4332 PF14229.1 gi|397779635|ref|YP_006544108.1| - 0.066 13.1 0.0 0.19 11.7 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) ABC_tran PF00005.22 gi|397779635|ref|YP_006544108.1| - 0.097 12.9 0.1 2.7 8.2 0.0 2.3 1 1 0 2 2 2 0 ABC transporter tRNA_anti-codon PF01336.20 gi|397779636|ref|YP_006544109.1| - 4.1e-21 74.6 0.0 3.2e-06 26.8 0.0 4.3 4 1 0 4 4 4 3 OB-fold nucleic acid binding domain T2SS-T3SS_pil_N PF13629.1 gi|397779636|ref|YP_006544109.1| - 0.0082 15.6 0.4 5.7 6.5 0.0 3.1 3 0 0 3 3 3 2 Pilus formation protein N terminal region Rep_fac-A_C PF08646.5 gi|397779636|ref|YP_006544109.1| - 0.18 11.5 0.0 2.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Replication factor-A C terminal domain Orn_Arg_deC_N PF02784.11 gi|397779637|ref|YP_006544110.1| - 6.1e-55 186.1 0.0 8.8e-55 185.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|397779637|ref|YP_006544110.1| - 1.4e-21 76.4 0.0 2.2e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|397779637|ref|YP_006544110.1| - 2.4e-12 46.8 0.1 8.5e-12 45.0 0.1 1.8 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain Aminotran_1_2 PF00155.16 gi|397779638|ref|YP_006544111.1| - 2.4e-62 211.0 0.0 2.7e-62 210.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|397779638|ref|YP_006544111.1| - 0.0003 19.2 0.0 0.00043 18.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|397779638|ref|YP_006544111.1| - 0.039 12.6 0.0 0.08 11.5 0.0 1.4 2 0 0 2 2 2 0 Allinase Aminotran_5 PF00266.14 gi|397779638|ref|YP_006544111.1| - 0.11 11.1 0.0 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V Aminotran_5 PF00266.14 gi|590000608|ref|YP_006544113.2| - 7e-88 294.8 0.0 8e-88 294.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|590000608|ref|YP_006544113.2| - 2.2e-09 36.8 0.1 2.9e-09 36.4 0.1 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|590000608|ref|YP_006544113.2| - 3.8e-08 32.7 2.5 5.4e-08 32.2 1.7 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|590000608|ref|YP_006544113.2| - 0.00081 17.7 0.0 0.0012 17.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme CutA1 PF03091.10 gi|397779641|ref|YP_006544114.1| - 2.7e-32 110.4 0.0 2.9e-32 110.3 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein FdhD-NarQ PF02634.10 gi|397779642|ref|YP_006544115.1| - 9e-53 179.1 0.3 1.3e-52 178.6 0.2 1.2 1 0 0 1 1 1 1 FdhD/NarQ family DUF1890 PF09001.6 gi|397779643|ref|YP_006544116.1| - 9.3e-58 194.1 0.0 1.1e-57 193.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) DUF1894 PF08979.6 gi|397779644|ref|YP_006544117.1| - 4.2e-36 122.8 0.1 4.7e-36 122.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) PAS_9 PF13426.1 gi|397779645|ref|YP_006544118.1| - 2.5e-33 114.5 0.0 3.1e-16 59.6 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|397779645|ref|YP_006544118.1| - 5.9e-33 113.0 0.0 3.6e-15 55.7 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|397779645|ref|YP_006544118.1| - 3e-26 91.5 0.1 7.7e-14 51.6 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|397779645|ref|YP_006544118.1| - 9e-21 72.9 0.0 4.6e-10 38.9 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|397779645|ref|YP_006544118.1| - 5.3e-15 55.1 0.0 1.2e-14 53.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|397779645|ref|YP_006544118.1| - 5.8e-14 52.0 0.0 3.5e-06 27.0 0.0 3.4 3 2 0 3 3 2 2 PAS fold Response_reg PF00072.19 gi|397779645|ref|YP_006544118.1| - 3.8e-13 49.4 0.0 9.6e-13 48.1 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|397779645|ref|YP_006544118.1| - 4.3e-11 43.4 0.1 1.7e-10 41.6 0.0 2.0 2 0 0 2 2 1 1 GAF domain GAF_3 PF13492.1 gi|397779645|ref|YP_006544118.1| - 1.1e-09 38.4 0.1 3.7e-09 36.7 0.0 2.0 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.6 gi|397779645|ref|YP_006544118.1| - 6e-08 32.6 0.0 3.1e-05 23.9 0.0 3.0 3 0 0 3 3 3 1 PAS fold GAF PF01590.21 gi|397779645|ref|YP_006544118.1| - 7.3e-07 29.4 0.0 2.8e-06 27.5 0.0 2.0 2 0 0 2 2 2 1 GAF domain PAS_10 PF13596.1 gi|397779645|ref|YP_006544118.1| - 1.5e-05 25.2 0.0 0.0044 17.2 0.0 2.7 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|397779645|ref|YP_006544118.1| - 0.00037 20.2 0.2 0.0013 18.4 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain OKR_DC_1_N PF03709.10 gi|397779645|ref|YP_006544118.1| - 0.0031 17.5 0.0 0.12 12.3 0.0 2.7 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain LcrG PF07216.7 gi|397779645|ref|YP_006544118.1| - 0.026 14.5 0.1 2.4 8.2 0.0 3.0 2 0 0 2 2 2 0 LcrG protein ChAPs PF09295.5 gi|397779645|ref|YP_006544118.1| - 0.31 9.7 0.0 0.46 9.1 0.0 1.1 1 0 0 1 1 1 0 ChAPs (Chs5p-Arf1p-binding proteins) TspO_MBR PF03073.10 gi|397779646|ref|YP_006544119.1| - 1e-52 177.5 30.2 1.2e-52 177.3 20.9 1.0 1 0 0 1 1 1 1 TspO/MBR family CDP-OH_P_transf PF01066.16 gi|397779647|ref|YP_006544120.1| - 6.9e-15 55.1 12.0 2.2e-14 53.5 8.3 1.9 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.1 gi|397779648|ref|YP_006544121.1| - 1.2e-19 70.9 0.0 1.8e-19 70.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|397779648|ref|YP_006544121.1| - 9.8e-13 48.9 0.1 1.4e-12 48.4 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|397779648|ref|YP_006544121.1| - 6.4e-07 29.4 0.4 1.9e-06 27.9 0.1 1.8 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|397779648|ref|YP_006544121.1| - 4.5e-06 26.5 0.7 0.049 13.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain ATP_bind_2 PF03668.10 gi|397779648|ref|YP_006544121.1| - 0.00083 18.5 0.0 0.0011 18.1 0.0 1.1 1 0 0 1 1 1 1 P-loop ATPase protein family AAA_19 PF13245.1 gi|397779648|ref|YP_006544121.1| - 0.0027 17.4 0.4 0.0059 16.3 0.3 1.5 1 0 0 1 1 1 1 Part of AAA domain Hpr_kinase_C PF07475.7 gi|397779648|ref|YP_006544121.1| - 0.0052 16.1 0.0 0.0081 15.4 0.0 1.4 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain CoaE PF01121.15 gi|397779648|ref|YP_006544121.1| - 0.0062 15.9 0.2 0.034 13.5 0.0 2.1 1 1 1 2 2 2 1 Dephospho-CoA kinase ArgK PF03308.11 gi|397779648|ref|YP_006544121.1| - 0.0062 15.3 0.2 0.016 13.9 0.2 1.6 2 0 0 2 2 2 1 ArgK protein AAA_22 PF13401.1 gi|397779648|ref|YP_006544121.1| - 0.0088 16.1 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|397779648|ref|YP_006544121.1| - 0.037 13.1 0.0 0.055 12.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin CPT PF07931.7 gi|397779648|ref|YP_006544121.1| - 0.053 13.1 0.1 0.64 9.6 0.0 2.1 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA PF00004.24 gi|397779648|ref|YP_006544121.1| - 0.059 13.5 0.0 0.14 12.3 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|397779648|ref|YP_006544121.1| - 0.064 12.4 0.0 0.092 11.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MobB PF03205.9 gi|397779648|ref|YP_006544121.1| - 0.086 12.5 0.2 0.27 10.9 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|397779648|ref|YP_006544121.1| - 0.094 12.2 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain B12-binding PF02310.14 gi|397779648|ref|YP_006544121.1| - 0.097 12.5 0.0 0.44 10.4 0.0 1.9 1 1 0 1 1 1 0 B12 binding domain Glyco_transf_4 PF13439.1 gi|397779648|ref|YP_006544121.1| - 0.1 12.3 0.1 0.16 11.6 0.0 1.4 1 1 0 1 1 1 0 Glycosyltransferase Family 4 APS_kinase PF01583.15 gi|397779648|ref|YP_006544121.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Aminotran_1_2 PF00155.16 gi|397779649|ref|YP_006544122.1| - 4.8e-45 154.0 0.0 5.9e-45 153.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|397779649|ref|YP_006544122.1| - 2e-05 23.4 0.0 2.9e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Allinase Aminotran_3 PF00202.16 gi|397779650|ref|YP_006544123.1| - 7.6e-94 314.3 0.0 1.1e-93 313.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.14 gi|397779650|ref|YP_006544123.1| - 0.063 12.0 0.0 0.088 11.5 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V GMP_synt_C PF00958.17 gi|397779651|ref|YP_006544124.1| - 1.4e-28 98.4 0.0 2.6e-28 97.5 0.0 1.4 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|397779651|ref|YP_006544124.1| - 4.7e-10 38.7 0.1 7.7e-06 24.9 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|397779651|ref|YP_006544124.1| - 0.0001 21.0 0.0 0.0059 15.2 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|397779651|ref|YP_006544124.1| - 0.00029 20.3 0.3 0.0005 19.6 0.2 1.5 1 1 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|397779651|ref|YP_006544124.1| - 0.0018 17.5 0.0 0.0097 15.2 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.14 gi|397779651|ref|YP_006544124.1| - 0.0056 15.7 0.0 0.0083 15.2 0.0 1.2 1 0 0 1 1 1 1 Arginosuccinate synthase ThiI PF02568.9 gi|397779651|ref|YP_006544124.1| - 0.015 14.7 0.1 0.046 13.1 0.0 1.8 2 1 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|397779651|ref|YP_006544124.1| - 0.089 12.6 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family CTP_synth_N PF06418.9 gi|397779652|ref|YP_006544125.1| - 2.7e-125 416.9 0.5 3.7e-125 416.5 0.3 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|397779652|ref|YP_006544125.1| - 3.4e-47 160.4 0.0 1e-46 158.8 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|397779652|ref|YP_006544125.1| - 5.2e-08 32.5 0.0 2.9e-07 30.1 0.0 2.1 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|397779652|ref|YP_006544125.1| - 1.9e-07 30.6 0.1 4.3e-07 29.5 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain 4HBT PF03061.17 gi|590000609|ref|YP_006544126.2| - 2.7e-12 46.6 0.3 4e-12 46.1 0.2 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|590000609|ref|YP_006544126.2| - 6.7e-05 22.7 0.4 8.1e-05 22.4 0.3 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Big_2 PF02368.13 gi|590000609|ref|YP_006544126.2| - 0.034 14.0 0.0 0.05 13.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 2) RhodobacterPufX PF11511.3 gi|590000609|ref|YP_006544126.2| - 0.066 12.6 0.1 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Intrinsic membrane protein PufX DUF4127 PF13552.1 gi|590000609|ref|YP_006544126.2| - 0.087 11.2 0.0 0.1 10.9 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) Cna_B PF05738.8 gi|397779655|ref|YP_006544128.1| - 3.3e-40 135.6 13.1 1e-11 44.4 0.0 4.8 4 0 0 4 4 4 4 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|397779655|ref|YP_006544128.1| - 8.6e-24 83.4 18.8 1.6e-07 31.2 0.8 5.3 5 0 0 5 5 5 4 Carboxypeptidase regulatory-like domain DUF2012 PF09430.5 gi|397779655|ref|YP_006544128.1| - 0.001 18.8 0.0 0.64 9.8 0.0 3.1 3 0 0 3 3 3 2 Protein of unknown function (DUF2012) Cna_B PF05738.8 gi|397779656|ref|YP_006544129.1| - 7.4e-06 25.6 0.0 1.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|397779656|ref|YP_006544129.1| - 0.0022 18.0 0.2 0.0038 17.2 0.1 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|397779657|ref|YP_006544130.1| - 1.5e-10 40.6 0.0 0.0012 18.5 0.0 3.2 2 1 0 2 2 2 2 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|397779657|ref|YP_006544130.1| - 9.8e-05 22.3 0.2 0.0031 17.5 0.0 3.0 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain PqqD PF05402.7 gi|397779657|ref|YP_006544130.1| - 0.00097 19.1 1.4 9.6 6.2 0.0 4.3 4 0 0 4 4 4 2 Coenzyme PQQ synthesis protein D (PqqD) DUF4166 PF13761.1 gi|397779657|ref|YP_006544130.1| - 0.052 13.4 0.0 1.4e+02 2.3 0.0 4.4 4 1 1 5 5 5 0 Domain of unknown function (DUF4166) DJ-1_PfpI PF01965.19 gi|397779658|ref|YP_006544131.1| - 9.9e-31 106.1 0.4 1.2e-30 105.8 0.3 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|397779658|ref|YP_006544131.1| - 7.9e-13 48.0 0.0 8.9e-13 47.8 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|397779658|ref|YP_006544131.1| - 0.014 14.8 0.4 0.061 12.7 0.0 2.0 1 1 1 2 2 2 0 Glutamine amidotransferase class-I DUF677 PF05055.7 gi|397779658|ref|YP_006544131.1| - 0.03 13.0 0.0 0.045 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF677) GATase_5 PF13507.1 gi|397779658|ref|YP_006544131.1| - 0.065 12.1 0.1 0.13 11.1 0.0 1.5 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Ribosomal_L32e PF01655.13 gi|397779658|ref|YP_006544131.1| - 0.11 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L32 Glycos_transf_2 PF00535.21 gi|397779659|ref|YP_006544132.1| - 6.5e-17 61.7 0.0 7.9e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|397779659|ref|YP_006544132.1| - 1.6e-09 37.9 0.0 9.8e-09 35.3 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 HD PF01966.17 gi|397779660|ref|YP_006544133.1| - 7.1e-12 45.4 0.4 1.3e-11 44.5 0.3 1.4 1 0 0 1 1 1 1 HD domain tRNA_anti-codon PF01336.20 gi|397779660|ref|YP_006544133.1| - 6.3e-06 25.9 0.1 1.3e-05 25.0 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TraI_2 PF07514.6 gi|397779660|ref|YP_006544133.1| - 1.6e-05 23.8 1.8 0.00011 21.0 1.2 1.9 1 1 0 1 1 1 1 Putative helicase HDOD PF08668.7 gi|397779660|ref|YP_006544133.1| - 0.00048 19.4 0.0 0.00078 18.7 0.0 1.3 1 0 0 1 1 1 1 HDOD domain DUF1687 PF07955.6 gi|397779661|ref|YP_006544134.1| - 0.15 12.0 0.0 0.16 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1687) YHS PF04945.8 gi|397779663|ref|YP_006544136.1| - 4.7e-19 67.9 0.9 4.9e-19 67.9 0.6 1.0 1 0 0 1 1 1 1 YHS domain ATPase-cat_bd PF12156.3 gi|397779663|ref|YP_006544136.1| - 0.00085 19.8 0.1 0.00089 19.7 0.1 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase Arc_trans_TRASH PF08394.5 gi|397779663|ref|YP_006544136.1| - 0.0021 18.1 0.9 0.0024 17.9 0.4 1.3 1 1 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.9 gi|397779663|ref|YP_006544136.1| - 0.016 14.8 0.4 0.027 14.1 0.3 1.5 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif E1-E2_ATPase PF00122.15 gi|397779664|ref|YP_006544137.1| - 1.2e-60 204.4 7.2 2.6e-59 200.0 0.7 2.6 2 0 0 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.21 gi|397779664|ref|YP_006544137.1| - 6.8e-52 177.0 8.1 1.4e-51 175.9 5.3 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|397779664|ref|YP_006544137.1| - 7.5e-32 109.2 0.0 9.8e-16 57.6 0.0 2.6 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|397779664|ref|YP_006544137.1| - 2e-16 60.7 0.0 4.4e-16 59.6 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|397779664|ref|YP_006544137.1| - 0.00011 21.8 2.2 0.011 15.3 0.1 2.7 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Ribosomal_S13 PF00416.17 gi|397779664|ref|YP_006544137.1| - 0.055 13.9 0.2 0.42 11.0 0.1 2.5 2 1 1 3 3 3 0 Ribosomal protein S13/S18 HEAT_2 PF13646.1 gi|397779665|ref|YP_006544138.1| - 1e-22 80.2 4.0 1e-13 51.3 0.8 2.2 2 0 0 2 2 2 2 HEAT repeats HEAT PF02985.17 gi|397779665|ref|YP_006544138.1| - 9.2e-11 40.8 1.3 0.039 14.0 0.0 3.9 4 0 0 4 4 4 3 HEAT repeat HEAT_PBS PF03130.11 gi|397779665|ref|YP_006544138.1| - 5.8e-08 32.4 14.2 0.02 15.3 0.0 5.0 5 0 0 5 5 5 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|397779665|ref|YP_006544138.1| - 2.7e-07 30.8 9.0 0.0084 16.5 0.0 3.8 3 1 1 4 4 4 4 HEAT-like repeat Arm PF00514.18 gi|397779665|ref|YP_006544138.1| - 0.00053 19.7 1.1 14 5.6 0.1 4.4 3 1 1 4 4 4 1 Armadillo/beta-catenin-like repeat ALF PF03752.8 gi|397779665|ref|YP_006544138.1| - 0.036 13.9 3.7 0.14 12.0 0.4 3.2 3 0 0 3 3 3 0 Short repeats of unknown function Aconitase_B_N PF11791.3 gi|397779665|ref|YP_006544138.1| - 0.14 11.9 0.0 14 5.5 0.0 2.6 2 1 0 2 2 2 0 Aconitate B N-terminal domain Cohesin_HEAT PF12765.2 gi|397779665|ref|YP_006544138.1| - 0.59 10.1 4.7 1.4 8.9 0.2 3.2 4 0 0 4 4 4 0 HEAT repeat associated with sister chromatid cohesion HEAT_2 PF13646.1 gi|397779668|ref|YP_006544141.1| - 2.6e-46 155.8 15.9 2.2e-14 53.5 0.5 4.1 2 1 2 4 4 4 4 HEAT repeats HEAT_PBS PF03130.11 gi|397779668|ref|YP_006544141.1| - 4.9e-22 76.1 31.3 0.00038 20.6 0.2 8.3 8 0 0 8 8 8 5 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|397779668|ref|YP_006544141.1| - 1.7e-20 71.1 6.4 0.011 15.7 0.0 7.5 6 1 1 7 7 7 7 HEAT repeat HEAT_EZ PF13513.1 gi|397779668|ref|YP_006544141.1| - 5.5e-18 64.8 24.3 0.021 15.3 0.2 7.4 6 1 1 7 7 7 7 HEAT-like repeat Arm PF00514.18 gi|397779668|ref|YP_006544141.1| - 2.5e-13 49.3 7.5 0.14 12.0 0.0 7.6 5 3 3 8 8 8 5 Armadillo/beta-catenin-like repeat Vac14_Fab1_bd PF12755.2 gi|397779668|ref|YP_006544141.1| - 0.00086 19.6 0.0 1.7 9.0 0.0 4.7 2 1 1 4 4 4 1 Vacuolar 14 Fab1-binding region Aconitase_B_N PF11791.3 gi|397779668|ref|YP_006544141.1| - 0.023 14.5 0.1 30 4.4 0.0 4.3 4 1 1 5 5 5 0 Aconitate B N-terminal domain DUF4042 PF13251.1 gi|397779668|ref|YP_006544141.1| - 0.083 12.3 0.4 0.64 9.4 0.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4042) CLASP_N PF12348.3 gi|397779668|ref|YP_006544141.1| - 1.3 8.3 4.0 73 2.6 0.0 4.1 4 1 1 5 5 5 0 CLASP N terminal Histidinol_dh PF00815.15 gi|397779669|ref|YP_006544142.1| - 5.7e-158 525.8 0.5 6.5e-158 525.6 0.3 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase PBP_like_2 PF12849.2 gi|397779670|ref|YP_006544143.1| - 2e-25 89.8 1.5 2.4e-25 89.5 1.1 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|397779670|ref|YP_006544143.1| - 2.2e-08 34.0 0.0 2.9e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|397779670|ref|YP_006544143.1| - 0.00029 19.8 0.0 0.00068 18.6 0.0 1.6 1 1 0 1 1 1 1 PBP superfamily domain LysR_substrate PF03466.15 gi|397779670|ref|YP_006544143.1| - 0.00052 19.1 0.0 0.00089 18.4 0.0 1.3 1 0 0 1 1 1 1 LysR substrate binding domain PBP_like_2 PF12849.2 gi|397779671|ref|YP_006544144.1| - 2.3e-26 92.8 0.8 2.9e-26 92.5 0.6 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|397779671|ref|YP_006544144.1| - 1.8e-10 40.8 0.0 2.6e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|397779671|ref|YP_006544144.1| - 0.0038 16.2 0.0 0.014 14.3 0.0 1.8 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_8 PF13416.1 gi|397779671|ref|YP_006544144.1| - 0.014 15.1 0.6 0.07 12.8 0.2 2.0 2 1 1 3 3 3 0 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|397779671|ref|YP_006544144.1| - 0.026 13.6 0.0 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain BPD_transp_1 PF00528.17 gi|397779672|ref|YP_006544145.1| - 2e-11 43.7 20.0 2e-11 43.7 13.9 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF3981 PF13139.1 gi|397779672|ref|YP_006544145.1| - 3.1 7.8 6.9 1.2 9.1 0.4 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF3981) ABC_tran PF00005.22 gi|397779673|ref|YP_006544146.1| - 4.9e-30 104.6 0.0 1.4e-29 103.1 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|397779673|ref|YP_006544146.1| - 1.6e-13 51.3 0.0 1.5e-06 28.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|397779673|ref|YP_006544146.1| - 2e-10 40.6 4.5 5.8e-10 39.1 0.1 3.0 3 0 0 3 3 3 1 TOBE domain TOBE_2 PF08402.5 gi|397779673|ref|YP_006544146.1| - 1.5e-05 24.8 0.7 5.3e-05 23.1 0.2 2.2 2 0 0 2 2 2 1 TOBE domain AAA_16 PF13191.1 gi|397779673|ref|YP_006544146.1| - 3.7e-05 23.7 0.3 0.00018 21.5 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|397779673|ref|YP_006544146.1| - 0.00018 21.0 0.1 0.13 11.6 0.1 2.2 1 1 1 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|397779673|ref|YP_006544146.1| - 0.00043 19.7 0.0 0.00083 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|397779673|ref|YP_006544146.1| - 0.001 19.2 0.4 0.027 14.6 0.3 2.3 1 1 0 1 1 1 1 AAA domain TOBE_3 PF12857.2 gi|397779673|ref|YP_006544146.1| - 0.0015 18.3 0.3 0.012 15.4 0.0 2.6 2 2 0 2 2 2 1 TOBE-like domain SbcCD_C PF13558.1 gi|397779673|ref|YP_006544146.1| - 0.0028 17.5 0.1 0.032 14.1 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DeoRC PF00455.17 gi|397779673|ref|YP_006544146.1| - 0.004 16.8 0.0 0.0061 16.2 0.0 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain SMC_N PF02463.14 gi|397779673|ref|YP_006544146.1| - 0.0083 15.3 0.0 1.3 8.2 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|397779673|ref|YP_006544146.1| - 0.0092 15.6 0.1 0.21 11.2 0.0 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|397779673|ref|YP_006544146.1| - 0.0095 16.7 0.8 0.021 15.6 0.5 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|397779673|ref|YP_006544146.1| - 0.012 14.8 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|397779673|ref|YP_006544146.1| - 0.013 14.5 0.0 2.1 7.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|397779673|ref|YP_006544146.1| - 0.043 14.1 0.0 0.12 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|397779673|ref|YP_006544146.1| - 0.051 12.3 0.0 0.08 11.7 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_33 PF13671.1 gi|397779673|ref|YP_006544146.1| - 0.077 12.8 0.2 0.24 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|397779673|ref|YP_006544146.1| - 0.081 12.6 0.5 5.9 6.7 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain Rad17 PF03215.10 gi|397779673|ref|YP_006544146.1| - 0.096 11.3 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein SBP_bac_11 PF13531.1 gi|590000610|ref|YP_006544147.2| - 8.6e-35 120.4 0.0 1.2e-34 119.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|590000610|ref|YP_006544147.2| - 2.7e-13 50.3 0.1 9.9e-13 48.4 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|590000610|ref|YP_006544147.2| - 0.058 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|590000611|ref|YP_006544148.2| - 1.2e-21 77.0 12.0 2.3e-21 76.1 8.3 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|397779676|ref|YP_006544149.1| - 6.3e-33 113.9 0.0 9.7e-33 113.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|397779676|ref|YP_006544149.1| - 8.1e-15 54.6 9.1 5.5e-14 52.0 0.7 2.9 3 0 0 3 3 3 2 TOBE domain AAA_21 PF13304.1 gi|397779676|ref|YP_006544149.1| - 3.4e-08 33.7 0.0 0.0043 17.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|397779676|ref|YP_006544149.1| - 2.9e-07 30.3 1.6 1.4e-06 28.1 0.2 2.7 2 1 1 3 3 3 1 TOBE domain SMC_N PF02463.14 gi|397779676|ref|YP_006544149.1| - 0.00013 21.2 0.0 0.25 10.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|397779676|ref|YP_006544149.1| - 0.00085 18.8 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|397779676|ref|YP_006544149.1| - 0.0014 17.7 0.0 0.97 8.4 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_19 PF13245.1 gi|397779676|ref|YP_006544149.1| - 0.0026 17.4 0.9 0.015 15.0 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain AAA_23 PF13476.1 gi|397779676|ref|YP_006544149.1| - 0.0028 17.9 0.1 0.0044 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|397779676|ref|YP_006544149.1| - 0.005 16.4 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|397779676|ref|YP_006544149.1| - 0.011 15.7 0.2 0.022 14.7 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|397779676|ref|YP_006544149.1| - 0.037 13.4 0.0 0.16 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|397779676|ref|YP_006544149.1| - 0.056 13.3 0.1 0.42 10.5 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.7 gi|397779676|ref|YP_006544149.1| - 0.06 12.4 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|397779676|ref|YP_006544149.1| - 0.069 13.9 0.1 0.48 11.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|397779676|ref|YP_006544149.1| - 0.075 13.1 0.1 0.6 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|397779676|ref|YP_006544149.1| - 0.089 12.9 0.0 0.46 10.6 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|397779676|ref|YP_006544149.1| - 0.14 11.8 0.2 4.8 6.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) S1 PF00575.18 gi|397779676|ref|YP_006544149.1| - 0.14 12.2 1.4 3.7 7.7 0.4 2.5 2 0 0 2 2 2 0 S1 RNA binding domain PQ-loop PF04193.9 gi|397779677|ref|YP_006544150.1| - 3.9e-11 42.3 0.2 3.9e-11 42.3 0.2 1.4 2 0 0 2 2 2 1 PQ loop repeat MtN3_slv PF03083.11 gi|397779677|ref|YP_006544150.1| - 1.3e-08 34.6 0.6 1.6e-08 34.3 0.4 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange DUF4293 PF14126.1 gi|397779677|ref|YP_006544150.1| - 0.0073 16.2 0.2 0.0095 15.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4293) CRCB PF02537.10 gi|397779677|ref|YP_006544150.1| - 0.0094 15.8 3.5 0.35 10.7 0.3 2.0 1 1 1 2 2 2 2 CrcB-like protein DUF4131 PF13567.1 gi|397779677|ref|YP_006544150.1| - 0.19 11.1 1.9 0.21 11.0 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) TrbE PF11100.3 gi|397779677|ref|YP_006544150.1| - 0.28 11.0 2.9 0.25 11.2 0.9 1.7 1 1 1 2 2 2 0 Conjugal transfer protein TrbE Gemini_mov PF01708.11 gi|397779677|ref|YP_006544150.1| - 0.47 10.0 4.2 2.7 7.6 2.9 2.2 1 1 0 1 1 1 0 Geminivirus putative movement protein Sulfate_transp PF00916.15 gi|397779678|ref|YP_006544151.1| - 9.4e-07 28.1 6.5 9.4e-07 28.1 4.5 3.4 1 1 2 3 3 3 2 Sulfate transporter family BenE PF03594.8 gi|397779678|ref|YP_006544151.1| - 0.0026 16.3 27.6 0.034 12.6 19.2 2.1 1 1 0 1 1 1 1 Benzoate membrane transport protein MS_channel PF00924.13 gi|397779679|ref|YP_006544152.1| - 3.7e-31 108.0 0.1 5.4e-31 107.5 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel MS_channel PF00924.13 gi|397779680|ref|YP_006544153.1| - 6.8e-30 103.9 0.1 9.1e-30 103.5 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel AA_kinase PF00696.23 gi|397779683|ref|YP_006544156.1| - 8.9e-26 90.8 0.0 1.1e-25 90.5 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family MCR_gamma PF02240.11 gi|397779683|ref|YP_006544156.1| - 0.1 11.6 0.1 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyl-coenzyme M reductase gamma subunit PBP_like_2 PF12849.2 gi|397779685|ref|YP_006544158.1| - 1.4e-23 83.8 0.4 1.8e-23 83.4 0.3 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|397779685|ref|YP_006544158.1| - 4.2e-10 39.6 0.0 6.8e-10 38.9 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|397779685|ref|YP_006544158.1| - 0.034 13.2 0.0 0.051 12.6 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain SBP_bac_6 PF13343.1 gi|397779685|ref|YP_006544158.1| - 0.043 13.1 0.0 0.074 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF2673 PF10880.3 gi|397779685|ref|YP_006544158.1| - 0.11 12.5 0.2 0.32 11.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2673) DUF1242 PF06842.7 gi|397779685|ref|YP_006544158.1| - 1.8 8.1 3.7 3.3 7.2 2.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1242) BPD_transp_1 PF00528.17 gi|397779686|ref|YP_006544159.1| - 4.5e-10 39.3 23.4 4.5e-10 39.3 16.2 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component TraL PF07178.6 gi|397779686|ref|YP_006544159.1| - 5.9 6.9 7.9 0.21 11.6 0.2 2.5 3 1 0 3 3 3 0 TraL protein ABC_tran PF00005.22 gi|397779687|ref|YP_006544160.1| - 8.9e-32 110.2 0.0 1.4e-31 109.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|397779687|ref|YP_006544160.1| - 9.4e-11 41.5 0.1 3.4e-10 39.7 0.1 2.1 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|397779687|ref|YP_006544160.1| - 9.7e-11 42.1 0.0 0.0004 20.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|397779687|ref|YP_006544160.1| - 1.9e-09 37.4 4.1 4e-08 33.2 0.0 3.1 3 1 0 3 3 3 1 TOBE domain SMC_N PF02463.14 gi|397779687|ref|YP_006544160.1| - 4.3e-06 26.1 0.0 6.7e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|397779687|ref|YP_006544160.1| - 4.3e-06 26.8 0.0 2.1e-05 24.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|397779687|ref|YP_006544160.1| - 2e-05 24.6 0.0 2.9e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|397779687|ref|YP_006544160.1| - 5.2e-05 22.6 0.3 0.00013 21.4 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain TOBE_3 PF12857.2 gi|397779687|ref|YP_006544160.1| - 0.00016 21.4 0.0 0.00069 19.4 0.0 2.2 2 1 0 2 2 1 1 TOBE-like domain AAA_10 PF12846.2 gi|397779687|ref|YP_006544160.1| - 0.00023 20.6 0.1 0.0014 18.1 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|397779687|ref|YP_006544160.1| - 0.0012 17.9 0.0 0.045 12.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|397779687|ref|YP_006544160.1| - 0.0026 18.5 0.2 0.0062 17.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|397779687|ref|YP_006544160.1| - 0.0097 16.2 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|397779687|ref|YP_006544160.1| - 0.016 14.4 0.0 0.025 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|397779687|ref|YP_006544160.1| - 0.019 14.6 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|397779687|ref|YP_006544160.1| - 0.022 14.5 0.4 0.14 11.9 0.1 2.4 2 0 0 2 2 2 0 Part of AAA domain AAA_33 PF13671.1 gi|397779687|ref|YP_006544160.1| - 0.037 13.8 0.0 0.068 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|397779687|ref|YP_006544160.1| - 0.046 14.0 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|397779687|ref|YP_006544160.1| - 0.068 12.7 0.1 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|397779687|ref|YP_006544160.1| - 0.083 12.2 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|397779687|ref|YP_006544160.1| - 0.088 11.6 0.1 0.67 8.8 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|397779687|ref|YP_006544160.1| - 0.096 12.6 0.1 1.1 9.2 0.1 2.4 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|397779687|ref|YP_006544160.1| - 0.19 11.3 0.0 0.29 10.8 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase ABC_ATPase PF09818.4 gi|397779688|ref|YP_006544161.1| - 4.9e-69 233.0 0.0 6.4e-69 232.6 0.0 1.0 1 0 0 1 1 1 1 Predicted ATPase of the ABC class ABC_tran PF00005.22 gi|397779688|ref|YP_006544161.1| - 0.0039 17.4 0.1 0.025 14.9 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_29 PF13555.1 gi|397779688|ref|YP_006544161.1| - 0.017 14.6 0.0 0.041 13.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|397779688|ref|YP_006544161.1| - 0.12 12.0 0.0 7.2 6.2 0.0 2.4 2 0 0 2 2 2 0 NACHT domain Lactamase_B PF00753.22 gi|397779689|ref|YP_006544162.1| - 1.5e-17 63.8 0.5 3.6e-17 62.6 0.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|397779689|ref|YP_006544162.1| - 2.6e-14 53.2 0.0 3.1e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|397779689|ref|YP_006544162.1| - 1.5e-05 24.7 0.0 0.00016 21.3 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain PAS_4 PF08448.5 gi|397779690|ref|YP_006544163.1| - 4.1e-34 116.9 6.7 1.7e-15 57.0 0.2 3.5 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|397779690|ref|YP_006544163.1| - 4.5e-28 97.6 0.0 2.2e-13 50.4 0.0 4.0 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|397779690|ref|YP_006544163.1| - 3.4e-22 78.3 0.1 6.5e-10 38.8 0.0 3.9 3 2 0 3 3 3 3 PAS fold PAS_7 PF12860.2 gi|397779690|ref|YP_006544163.1| - 1.5e-13 50.7 0.2 1.7e-05 24.7 0.0 4.8 3 2 2 5 5 5 3 PAS fold PAS_8 PF13188.1 gi|397779690|ref|YP_006544163.1| - 1e-10 41.0 0.2 0.011 15.5 0.0 4.4 3 2 1 4 4 4 2 PAS domain PAS_3 PF08447.6 gi|397779690|ref|YP_006544163.1| - 9.2e-10 38.4 0.0 0.00075 19.5 0.0 4.1 3 1 0 3 3 3 2 PAS fold Phostensin_N PF13916.1 gi|397779690|ref|YP_006544163.1| - 0.98 9.4 0.0 0.98 9.4 0.0 3.0 4 0 0 4 4 4 0 PP1-regulatory protein, Phostensin N-terminal Apc5 PF12862.2 gi|397779691|ref|YP_006544164.1| - 0.013 15.3 0.3 0.83 9.5 0.0 2.7 2 1 0 2 2 2 0 Anaphase-promoting complex subunit 5 TPR_19 PF14559.1 gi|397779691|ref|YP_006544164.1| - 0.085 13.2 0.1 0.53 10.6 0.0 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat DNA_ligase_A_M PF01068.16 gi|397779692|ref|YP_006544165.1| - 1.2e-47 161.9 0.0 2e-47 161.1 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|397779692|ref|YP_006544165.1| - 1.2e-39 136.0 0.0 5.9e-39 133.6 0.0 2.2 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|397779692|ref|YP_006544165.1| - 1.2e-19 70.5 0.0 2.6e-19 69.4 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region CysG_dimeriser PF10414.4 gi|397779692|ref|YP_006544165.1| - 0.013 15.0 0.1 0.26 10.8 0.0 2.8 2 0 0 2 2 2 0 Sirohaem synthase dimerisation region mRNA_cap_enzyme PF01331.14 gi|397779692|ref|YP_006544165.1| - 0.053 13.2 0.0 0.94 9.1 0.0 2.2 2 0 0 2 2 2 0 mRNA capping enzyme, catalytic domain DNA_ligase_OB_2 PF14743.1 gi|397779692|ref|YP_006544165.1| - 0.1 12.2 0.1 1 9.1 0.1 2.5 1 1 0 1 1 1 0 DNA ligase OB-like domain OrfB_IS605 PF01385.14 gi|397779693|ref|YP_006544166.1| - 6.5e-47 159.8 1.0 8.6e-47 159.4 0.7 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|397779693|ref|YP_006544166.1| - 9.8e-22 76.3 0.1 2e-21 75.3 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|397779693|ref|YP_006544166.1| - 2.6e-20 71.4 0.9 5.7e-20 70.3 0.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|397779693|ref|YP_006544166.1| - 0.017 14.3 0.4 2 7.6 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|397779693|ref|YP_006544166.1| - 0.027 14.1 0.8 0.074 12.7 0.5 1.7 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|397779693|ref|YP_006544166.1| - 0.043 13.6 0.4 0.1 12.4 0.3 1.6 1 0 0 1 1 1 0 Double zinc ribbon zf-piccolo PF05715.8 gi|397779693|ref|YP_006544166.1| - 0.1 12.6 0.1 0.21 11.6 0.1 1.4 1 0 0 1 1 1 0 Piccolo Zn-finger PMT_C PF11647.3 gi|397779693|ref|YP_006544166.1| - 0.12 12.0 0.1 2.4 7.8 0.0 2.5 2 0 0 2 2 2 0 C-terminal region of Pasteurella multocida toxin residues 569-1285 Acetone_carb_G PF08882.6 gi|397779693|ref|YP_006544166.1| - 0.16 11.9 0.5 2.4 8.2 0.0 2.4 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit A2L_zn_ribbon PF08792.5 gi|397779693|ref|YP_006544166.1| - 0.21 11.0 1.1 0.55 9.7 0.8 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|397779693|ref|YP_006544166.1| - 0.3 10.6 2.3 8.1 6.0 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain CCDC32 PF14989.1 gi|397779693|ref|YP_006544166.1| - 0.34 10.7 4.3 0.095 12.5 0.7 1.7 2 0 0 2 2 2 0 Coiled-coil domain containing 32 Rubredoxin PF00301.15 gi|397779693|ref|YP_006544166.1| - 9.3 6.2 11.0 9.1 6.2 4.0 2.9 2 1 0 2 2 2 0 Rubredoxin DUF650 PF04894.7 gi|397779694|ref|YP_006544167.1| - 2.9e-79 266.3 0.0 3.8e-79 266.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|397779694|ref|YP_006544167.1| - 4.1e-30 103.6 0.0 6.9e-30 102.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) DUF2117 PF09890.4 gi|397779695|ref|YP_006544168.1| - 4.3e-50 169.9 0.0 5.5e-50 169.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) NHL PF01436.16 gi|397779695|ref|YP_006544168.1| - 0.07 13.1 0.2 0.23 11.4 0.1 2.0 1 0 0 1 1 1 0 NHL repeat AIM24 PF01987.12 gi|397779696|ref|YP_006544169.1| - 2.5e-65 219.9 4.4 2.8e-65 219.8 3.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 HNH PF01844.18 gi|397779697|ref|YP_006544170.1| - 6.7e-08 32.2 0.7 1.5e-07 31.2 0.1 1.7 2 0 0 2 2 2 1 HNH endonuclease LIM PF00412.17 gi|397779697|ref|YP_006544170.1| - 0.043 13.8 0.2 0.23 11.5 0.0 1.9 2 0 0 2 2 2 0 LIM domain Zn-ribbon_8 PF09723.5 gi|397779697|ref|YP_006544170.1| - 0.092 12.7 0.6 2.3 8.2 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Dynactin_p62 PF05502.8 gi|397779697|ref|YP_006544170.1| - 0.092 11.4 0.1 0.11 11.2 0.1 1.0 1 0 0 1 1 1 0 Dynactin p62 family Radical_SAM_N PF08497.5 gi|397779698|ref|YP_006544171.1| - 5.5e-128 426.1 0.0 7.3e-128 425.7 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.3 gi|397779698|ref|YP_006544171.1| - 6.3e-19 68.3 0.0 1.2e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.16 gi|397779698|ref|YP_006544171.1| - 4.3e-16 59.5 0.9 8.5e-16 58.5 0.6 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF296 PF03479.10 gi|397779699|ref|YP_006544172.1| - 3.9e-12 45.8 0.0 4.4e-12 45.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) Acyl_transf_3 PF01757.17 gi|397779700|ref|YP_006544173.1| - 1.1e-32 113.1 50.1 1.5e-32 112.7 34.7 1.2 1 0 0 1 1 1 1 Acyltransferase family DUF1624 PF07786.7 gi|397779700|ref|YP_006544173.1| - 1.2e-05 24.7 13.3 1.2e-05 24.7 9.2 3.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1624) Y_Y_Y PF07495.8 gi|397779702|ref|YP_006544175.1| - 0.03 14.0 0.0 0.076 12.7 0.0 1.7 1 0 0 1 1 1 0 Y_Y_Y domain 2-Hacid_dh_C PF02826.14 gi|397779705|ref|YP_006544178.1| - 1.4e-66 223.0 0.0 2.1e-66 222.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|397779705|ref|YP_006544178.1| - 1.6e-37 127.9 0.8 5.4e-37 126.2 0.2 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|397779705|ref|YP_006544178.1| - 3e-11 42.5 0.2 9.7e-11 40.9 0.1 2.0 1 0 0 1 1 1 1 ACT domain NAD_binding_2 PF03446.10 gi|397779705|ref|YP_006544178.1| - 0.0014 18.5 0.5 0.004 16.9 0.1 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|397779705|ref|YP_006544178.1| - 0.0038 16.6 0.0 0.0078 15.5 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain PPDK_N PF01326.14 gi|397779706|ref|YP_006544179.1| - 3.4e-107 358.3 0.1 6.8e-107 357.3 0.1 1.4 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|397779706|ref|YP_006544179.1| - 1.1e-83 280.5 0.0 1.6e-83 280.0 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|397779706|ref|YP_006544179.1| - 5.7e-28 96.3 1.6 2.5e-27 94.2 1.1 2.2 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.8 gi|397779706|ref|YP_006544179.1| - 0.019 14.7 0.4 0.37 10.5 0.0 2.5 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal UPF0147 PF03685.8 gi|397779706|ref|YP_006544179.1| - 0.041 13.7 0.1 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0147) Epimerase_2 PF02350.14 gi|397779706|ref|YP_006544179.1| - 0.13 11.0 0.0 0.66 8.6 0.0 2.1 3 0 0 3 3 3 0 UDP-N-acetylglucosamine 2-epimerase Pyridoxal_deC PF00282.14 gi|590000612|ref|YP_006544180.2| - 1.4e-31 109.2 0.0 2.2e-31 108.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|590000612|ref|YP_006544180.2| - 5.7e-12 45.0 0.0 3.6e-11 42.4 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|590000612|ref|YP_006544180.2| - 1.1e-05 24.5 0.0 2.1e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|590000612|ref|YP_006544180.2| - 0.00039 19.6 0.0 0.00045 19.4 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Pribosyltran PF00156.22 gi|397779708|ref|YP_006544181.1| - 5.1e-18 64.9 0.4 7.6e-18 64.4 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|397779708|ref|YP_006544181.1| - 0.01 15.0 0.0 0.015 14.4 0.0 1.3 1 1 0 1 1 1 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|397779708|ref|YP_006544181.1| - 0.02 14.1 0.0 0.03 13.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Diphthamide_syn PF01866.12 gi|397779709|ref|YP_006544182.1| - 2.9e-90 302.6 0.0 3.3e-90 302.4 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Peripla_BP_6 PF13458.1 gi|397779709|ref|YP_006544182.1| - 0.0071 15.7 0.5 0.12 11.6 0.1 2.1 2 0 0 2 2 2 1 Periplasmic binding protein Methyltransf_26 PF13659.1 gi|397779710|ref|YP_006544183.1| - 8.5e-18 64.4 0.3 1.2e-17 64.0 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|397779710|ref|YP_006544183.1| - 2.6e-15 56.2 0.0 3.9e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|397779710|ref|YP_006544183.1| - 4.1e-15 55.6 0.7 5.7e-15 55.2 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|397779710|ref|YP_006544183.1| - 5.5e-14 52.0 0.0 7.9e-14 51.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397779710|ref|YP_006544183.1| - 6.2e-12 46.1 0.1 8.9e-12 45.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|397779710|ref|YP_006544183.1| - 7.5e-10 38.6 0.1 9.9e-10 38.2 0.1 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|397779710|ref|YP_006544183.1| - 1.4e-08 35.0 0.1 2.3e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|397779710|ref|YP_006544183.1| - 6.8e-08 32.9 0.1 1.2e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|397779710|ref|YP_006544183.1| - 3.9e-07 29.6 0.0 5.3e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|397779710|ref|YP_006544183.1| - 4.4e-06 26.5 0.0 5.6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|397779710|ref|YP_006544183.1| - 7.9e-06 25.0 0.0 1.1e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF43 FmrO PF07091.6 gi|397779710|ref|YP_006544183.1| - 6.6e-05 22.0 0.1 9.9e-05 21.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_15 PF09445.5 gi|397779710|ref|YP_006544183.1| - 8.8e-05 22.1 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.1 gi|397779710|ref|YP_006544183.1| - 0.00028 20.6 0.0 0.00037 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397779710|ref|YP_006544183.1| - 0.00053 20.4 0.0 0.0011 19.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|397779710|ref|YP_006544183.1| - 0.00055 19.5 0.0 0.00079 19.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein N6_Mtase PF02384.11 gi|397779710|ref|YP_006544183.1| - 0.0018 17.4 0.0 0.0026 16.9 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase PCMT PF01135.14 gi|397779710|ref|YP_006544183.1| - 0.02 14.4 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|397779710|ref|YP_006544183.1| - 0.047 12.8 0.0 0.066 12.3 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_16 PF10294.4 gi|397779710|ref|YP_006544183.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase TehB PF03848.9 gi|397779710|ref|YP_006544183.1| - 0.16 11.0 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB MFS_1 PF07690.11 gi|397779711|ref|YP_006544184.1| - 2.8e-34 118.3 85.8 6.7e-28 97.4 32.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|397779711|ref|YP_006544184.1| - 0.0006 18.5 17.2 0.0006 18.5 11.9 2.2 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.2 gi|397779711|ref|YP_006544184.1| - 0.8 9.5 11.0 0.2 11.4 0.2 4.4 4 1 1 5 5 5 0 MFS_1 like family ABC1 PF03109.11 gi|397779712|ref|YP_006544185.1| - 2.3e-30 105.0 0.0 4.7e-30 104.0 0.0 1.5 1 0 0 1 1 1 1 ABC1 family APH PF01636.18 gi|397779712|ref|YP_006544185.1| - 0.00011 22.0 0.1 0.0047 16.6 0.0 2.8 2 0 0 2 2 2 1 Phosphotransferase enzyme family WaaY PF06176.6 gi|397779712|ref|YP_006544185.1| - 0.022 13.9 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) YukC PF10140.4 gi|397779712|ref|YP_006544185.1| - 0.19 10.2 0.0 1.9 6.9 0.0 2.0 2 0 0 2 2 2 0 WXG100 protein secretion system (Wss), protein YukC DUF2583 PF10762.4 gi|397779712|ref|YP_006544185.1| - 0.41 10.7 3.2 1.4 9.1 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) FeThRed_B PF02943.10 gi|397779713|ref|YP_006544186.1| - 4.1e-24 84.3 1.7 4.5e-24 84.2 1.2 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain GATase_5 PF13507.1 gi|397779714|ref|YP_006544187.1| - 4.7e-46 156.7 0.0 5.7e-46 156.5 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|397779714|ref|YP_006544187.1| - 1.4e-06 27.7 0.0 2.2e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|397779714|ref|YP_006544187.1| - 8e-06 25.5 0.1 1.7e-05 24.4 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|397779714|ref|YP_006544187.1| - 0.00021 20.8 0.0 0.00024 20.6 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DUF4066 PF13278.1 gi|397779714|ref|YP_006544187.1| - 0.0004 19.6 0.0 0.00064 19.0 0.0 1.3 1 0 0 1 1 1 1 Putative amidotransferase BPL_N PF09825.4 gi|397779714|ref|YP_006544187.1| - 0.023 13.5 0.3 0.31 9.7 0.1 2.0 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal SNO PF01174.14 gi|397779714|ref|YP_006544187.1| - 0.024 14.2 0.0 0.083 12.5 0.0 1.7 2 0 0 2 2 2 0 SNO glutamine amidotransferase family PurS PF02700.9 gi|397779715|ref|YP_006544188.1| - 1.3e-24 85.9 0.0 1.5e-24 85.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF1485 PF07364.7 gi|397779715|ref|YP_006544188.1| - 0.063 12.4 0.0 0.069 12.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1485) TPR_10 PF13374.1 gi|397779715|ref|YP_006544188.1| - 2.4 8.2 5.3 15 5.6 3.5 2.1 1 1 1 2 2 2 0 Tetratricopeptide repeat SAICAR_synt PF01259.13 gi|397779716|ref|YP_006544189.1| - 3.8e-56 189.9 0.0 4.6e-56 189.6 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase Radical_SAM PF04055.16 gi|397779717|ref|YP_006544190.1| - 5.8e-13 49.3 0.0 1e-12 48.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily BATS PF06968.8 gi|397779717|ref|YP_006544190.1| - 0.021 14.6 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain CofC PF01983.11 gi|397779718|ref|YP_006544191.1| - 1.5e-48 164.6 0.0 1.9e-48 164.2 0.0 1.1 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|397779718|ref|YP_006544191.1| - 0.00041 20.4 0.0 0.0013 18.7 0.0 1.7 1 1 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.4 gi|397779718|ref|YP_006544191.1| - 0.016 14.8 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) F420_ligase PF01996.11 gi|590000613|ref|YP_009001392.1| - 2.1e-74 249.4 0.5 2.5e-74 249.2 0.3 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Pterin_bind PF00809.17 gi|397779719|ref|YP_006544192.1| - 1.2e-32 113.0 0.0 1.5e-32 112.6 0.0 1.2 1 0 0 1 1 1 1 Pterin binding enzyme AP_endonuc_2 PF01261.19 gi|397779719|ref|YP_006544192.1| - 0.026 13.7 0.1 0.17 11.1 0.1 2.0 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Saccharop_dh PF03435.13 gi|397779719|ref|YP_006544192.1| - 0.077 11.9 0.0 0.098 11.6 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Peptidase_M24 PF00557.19 gi|397779719|ref|YP_006544192.1| - 0.12 11.9 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Metallopeptidase family M24 THF_DHG_CYH_C PF02882.14 gi|397779720|ref|YP_006544193.1| - 4.3e-70 233.9 0.1 5.6e-70 233.5 0.1 1.1 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|397779720|ref|YP_006544193.1| - 5.8e-38 129.5 0.0 8.5e-38 128.9 0.0 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Pterin_bind PF00809.17 gi|397779720|ref|YP_006544193.1| - 0.13 11.6 0.2 0.45 9.8 0.0 1.8 1 1 1 2 2 2 0 Pterin binding enzyme SHMT PF00464.14 gi|397779721|ref|YP_006544194.1| - 4.1e-156 519.3 0.1 5.2e-156 519.0 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase GMC_oxred_C PF05199.8 gi|397779721|ref|YP_006544194.1| - 0.023 14.9 0.3 10 6.4 0.0 3.0 3 0 0 3 3 3 0 GMC oxidoreductase Sec2p PF06428.6 gi|397779722|ref|YP_006544195.1| - 0.0015 18.3 3.2 0.0028 17.4 1.8 1.7 1 1 0 1 1 1 1 GDP/GTP exchange factor Sec2p DnaB_C PF03796.10 gi|397779722|ref|YP_006544195.1| - 0.013 14.3 0.5 0.013 14.3 0.4 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Med4 PF10018.4 gi|397779722|ref|YP_006544195.1| - 0.052 12.9 6.1 3.6 6.9 3.5 2.4 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 CENP-F_leu_zip PF10473.4 gi|397779722|ref|YP_006544195.1| - 0.06 13.2 10.5 0.11 12.3 7.3 1.4 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 bZIP_1 PF00170.16 gi|397779722|ref|YP_006544195.1| - 0.16 11.9 8.2 1.6 8.7 0.4 2.4 1 1 1 2 2 2 0 bZIP transcription factor IncA PF04156.9 gi|397779722|ref|YP_006544195.1| - 0.37 10.3 5.3 1.5 8.3 3.6 1.8 1 1 0 1 1 1 0 IncA protein V-SNARE PF05008.10 gi|397779722|ref|YP_006544195.1| - 0.74 10.0 5.1 0.28 11.3 1.3 2.1 2 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus APG6 PF04111.7 gi|397779722|ref|YP_006544195.1| - 0.86 8.5 5.0 1.1 8.2 3.5 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Lge1 PF11488.3 gi|397779722|ref|YP_006544195.1| - 1 9.5 5.2 13 6.0 0.2 2.7 2 1 1 3 3 3 0 Transcriptional regulatory protein LGE1 DUF2361 PF10153.4 gi|397779722|ref|YP_006544195.1| - 2 8.6 5.7 3.3 7.9 2.8 2.1 1 1 1 2 2 2 0 Uncharacterised conserved protein (DUF2361) SMC_N PF02463.14 gi|397779723|ref|YP_006544196.1| - 4.8e-60 202.5 0.1 6.8e-60 202.0 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|397779723|ref|YP_006544196.1| - 5.4e-26 90.9 0.0 1.8e-25 89.2 0.0 2.0 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|397779723|ref|YP_006544196.1| - 5.9e-18 65.9 0.1 5.9e-18 65.9 0.1 4.6 2 2 1 3 3 1 1 AAA domain AAA_21 PF13304.1 gi|397779723|ref|YP_006544196.1| - 6.6e-11 42.6 0.6 1.9e-05 24.7 0.2 2.6 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|397779723|ref|YP_006544196.1| - 7e-08 31.9 0.1 7e-08 31.9 0.1 3.3 4 0 0 4 4 4 1 AAA ATPase domain AAA_29 PF13555.1 gi|397779723|ref|YP_006544196.1| - 1.3e-06 27.8 0.0 3e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Reo_sigmaC PF04582.7 gi|397779723|ref|YP_006544196.1| - 4e-05 22.9 12.1 0.48 9.5 0.2 5.2 2 2 3 6 6 6 5 Reovirus sigma C capsid protein CCDC155 PF14662.1 gi|397779723|ref|YP_006544196.1| - 6.7e-05 22.5 13.6 6.7e-05 22.5 9.4 6.5 2 2 4 6 6 5 1 Coiled-coil region of CCDC155 Lebercilin PF15619.1 gi|397779723|ref|YP_006544196.1| - 0.00021 20.8 6.5 0.00021 20.8 4.5 5.9 2 2 3 5 5 5 1 Ciliary protein causing Leber congenital amaurosis disease AAA_13 PF13166.1 gi|397779723|ref|YP_006544196.1| - 0.00024 19.7 45.3 0.00043 18.8 1.9 5.7 3 2 3 6 6 6 3 AAA domain ABC_tran PF00005.22 gi|397779723|ref|YP_006544196.1| - 0.00079 19.7 7.2 0.0092 16.2 0.0 4.4 3 2 0 3 3 3 1 ABC transporter CENP-F_leu_zip PF10473.4 gi|397779723|ref|YP_006544196.1| - 0.0012 18.7 23.8 0.0018 18.1 4.7 7.2 3 3 3 7 7 7 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 APG6 PF04111.7 gi|397779723|ref|YP_006544196.1| - 0.0091 15.0 0.5 0.0091 15.0 0.3 6.9 2 2 6 8 8 8 2 Autophagy protein Apg6 NPV_P10 PF05531.7 gi|397779723|ref|YP_006544196.1| - 0.015 15.5 5.4 1 9.6 0.0 5.3 5 1 1 6 6 5 0 Nucleopolyhedrovirus P10 protein TcdA_TcdB PF12919.2 gi|397779723|ref|YP_006544196.1| - 0.12 10.8 4.8 0.27 9.6 3.3 1.6 1 0 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain ADIP PF11559.3 gi|397779723|ref|YP_006544196.1| - 0.12 12.2 55.8 0.091 12.6 2.2 6.7 3 3 3 6 6 6 0 Afadin- and alpha -actinin-Binding Baculo_PEP_C PF04513.7 gi|397779723|ref|YP_006544196.1| - 0.25 11.1 9.8 4.8 7.0 0.1 5.3 4 2 4 8 8 8 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3584 PF12128.3 gi|397779723|ref|YP_006544196.1| - 0.62 7.3 64.3 0.0027 15.1 4.9 4.7 2 2 2 4 4 4 0 Protein of unknown function (DUF3584) IFT46_B_C PF12317.3 gi|397779723|ref|YP_006544196.1| - 0.92 8.8 3.9 0.85 8.9 0.3 2.7 3 1 1 4 4 4 0 Intraflagellar transport complex B protein 46 C terminal Fib_alpha PF08702.5 gi|397779723|ref|YP_006544196.1| - 4.1 7.5 28.1 0.77 9.8 3.3 5.3 4 1 0 5 5 5 0 Fibrinogen alpha/beta chain family ScpA_ScpB PF02616.9 gi|397779724|ref|YP_006544197.1| - 1.1e-25 90.6 0.1 5.9e-25 88.2 0.1 2.0 1 1 0 1 1 1 1 ScpA/B protein CSTF2_hinge PF14327.1 gi|397779724|ref|YP_006544197.1| - 0.19 11.8 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 DDE_3 PF13358.1 gi|590000614|ref|YP_006544198.2| - 5.2e-26 91.1 0.0 7.9e-26 90.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|590000615|ref|YP_009001393.1| - 1.1e-23 83.5 0.6 1.3e-23 83.2 0.1 1.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|590000615|ref|YP_009001393.1| - 7.8e-10 39.4 0.9 1.9e-09 38.1 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|590000615|ref|YP_009001393.1| - 2.4e-06 26.9 0.7 0.00029 20.3 0.0 2.9 2 2 1 3 3 3 2 Homeodomain-like domain LZ_Tnp_IS481 PF13011.1 gi|590000615|ref|YP_009001393.1| - 0.072 13.4 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Methyltransf_18 PF12847.2 gi|397779726|ref|YP_006544199.1| - 2.6e-10 40.8 0.0 4.3e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397779726|ref|YP_006544199.1| - 1.7e-06 27.8 0.0 2.5e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397779726|ref|YP_006544199.1| - 7.1e-05 23.2 0.0 0.00011 22.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|397779726|ref|YP_006544199.1| - 0.00072 18.7 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_11 PF08241.7 gi|397779726|ref|YP_006544199.1| - 0.0017 18.7 0.0 0.0031 17.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397779726|ref|YP_006544199.1| - 0.0037 16.8 0.0 0.0063 16.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|397779726|ref|YP_006544199.1| - 0.0055 16.7 0.0 0.008 16.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|397779726|ref|YP_006544199.1| - 0.0055 15.7 0.0 0.0081 15.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|397779726|ref|YP_006544199.1| - 0.017 14.1 0.0 0.025 13.6 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|397779726|ref|YP_006544199.1| - 0.019 14.3 0.0 0.029 13.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain TehB PF03848.9 gi|397779726|ref|YP_006544199.1| - 0.16 11.0 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_18 PF12847.2 gi|397779727|ref|YP_006544200.1| - 1.3e-06 28.9 0.0 2.3e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397779727|ref|YP_006544200.1| - 1.2e-05 25.1 0.0 1.8e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397779727|ref|YP_006544200.1| - 0.00042 20.7 0.0 0.00071 19.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|397779727|ref|YP_006544200.1| - 0.0012 18.0 0.0 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G RrnaAD PF00398.15 gi|397779727|ref|YP_006544200.1| - 0.0036 16.3 0.0 0.0055 15.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|397779727|ref|YP_006544200.1| - 0.0096 16.3 0.0 0.018 15.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|397779727|ref|YP_006544200.1| - 0.016 14.5 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Hemerythrin PF01814.18 gi|397779728|ref|YP_006544201.1| - 1.8e-12 47.5 7.5 3.3e-12 46.7 4.8 1.7 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain Hemerythrin PF01814.18 gi|397779729|ref|YP_006544202.1| - 4e-16 59.3 1.5 5.9e-16 58.8 1.0 1.3 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Enolase_C PF00113.17 gi|397779729|ref|YP_006544202.1| - 0.054 12.4 0.1 0.058 12.3 0.1 1.1 1 0 0 1 1 1 0 Enolase, C-terminal TIM barrel domain Peptidase_M3_N PF08439.5 gi|397779729|ref|YP_006544202.1| - 0.16 12.0 1.4 0.81 9.7 0.1 2.4 2 0 0 2 2 2 0 Oligopeptidase F Hemerythrin PF01814.18 gi|590000616|ref|YP_006544203.2| - 3.9e-16 59.4 2.1 6.2e-16 58.7 1.4 1.3 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain DUF3106 PF11304.3 gi|590000616|ref|YP_006544203.2| - 0.063 13.7 0.2 3.5 8.0 0.0 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3106) TMEM240 PF15207.1 gi|590000616|ref|YP_006544203.2| - 0.15 11.6 0.0 0.46 10.0 0.0 1.8 1 1 1 2 2 2 0 TMEM240 family AA_permease_2 PF13520.1 gi|397779731|ref|YP_006544204.1| - 5e-51 173.5 42.1 6.2e-51 173.2 29.2 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|397779731|ref|YP_006544204.1| - 7.8e-36 123.4 45.0 1e-35 123.0 31.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|397779731|ref|YP_006544204.1| - 0.029 14.2 0.7 0.029 14.2 0.5 4.9 6 1 0 6 6 6 0 C-terminus of AA_permease PBP_like_2 PF12849.2 gi|397779732|ref|YP_006544205.1| - 1.5e-47 162.4 0.8 2.6e-47 161.6 0.6 1.3 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|397779732|ref|YP_006544205.1| - 6.9e-23 80.5 0.1 9.4e-23 80.1 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|397779732|ref|YP_006544205.1| - 1.2e-10 41.4 0.0 1.9e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|397779732|ref|YP_006544205.1| - 3.6e-09 36.8 0.0 4.7e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|397779732|ref|YP_006544205.1| - 0.00064 18.8 0.0 0.0013 17.8 0.0 1.5 1 1 0 1 1 1 1 LysR substrate binding domain Lactamase_B PF00753.22 gi|397779733|ref|YP_006544206.1| - 1.1e-13 51.2 2.1 1.9e-12 47.2 1.5 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily ACT PF01842.20 gi|397779733|ref|YP_006544206.1| - 1.9e-07 30.4 0.0 0.023 14.1 0.0 2.7 2 0 0 2 2 2 2 ACT domain Thr_dehydrat_C PF00585.13 gi|397779733|ref|YP_006544206.1| - 0.0002 20.8 0.0 0.38 10.3 0.0 2.5 2 0 0 2 2 2 2 C-terminal regulatory domain of Threonine dehydratase Lactamase_B_2 PF12706.2 gi|397779733|ref|YP_006544206.1| - 0.0021 17.6 0.0 0.0042 16.6 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ACT_4 PF13291.1 gi|397779733|ref|YP_006544206.1| - 0.0026 18.0 0.0 0.41 11.0 0.0 2.5 2 0 0 2 2 2 1 ACT domain PQQ_2 PF13360.1 gi|397779734|ref|YP_006544207.1| - 3.8e-14 52.7 12.9 2.5e-08 33.6 1.1 2.4 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|397779734|ref|YP_006544207.1| - 2.1e-09 37.3 26.0 0.0065 16.7 0.3 6.3 6 1 0 6 6 6 4 PQQ-like domain WD40 PF00400.27 gi|397779734|ref|YP_006544207.1| - 2.5e-08 33.4 1.7 0.017 15.0 0.0 4.8 6 0 0 6 6 6 2 WD domain, G-beta repeat PQQ PF01011.16 gi|397779734|ref|YP_006544207.1| - 1.2e-07 30.9 1.6 0.17 11.4 0.0 4.8 4 0 0 4 4 4 3 PQQ enzyme repeat Phage_base_V PF04717.7 gi|397779734|ref|YP_006544207.1| - 0.045 13.6 0.0 0.14 12.1 0.0 1.8 1 0 0 1 1 1 0 Phage-related baseplate assembly protein PPC PF04151.10 gi|397779734|ref|YP_006544207.1| - 0.57 11.1 5.2 4.2 8.4 0.1 3.0 3 0 0 3 3 3 0 Bacterial pre-peptidase C-terminal domain Flavodoxin_5 PF12724.2 gi|397779735|ref|YP_006544208.1| - 5.6e-34 117.1 0.0 6.4e-34 117.0 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|397779735|ref|YP_006544208.1| - 8.5e-07 29.0 0.0 1.1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|397779735|ref|YP_006544208.1| - 5.1e-05 22.8 1.0 0.0081 15.6 0.0 2.4 2 1 1 3 3 3 2 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.2 gi|397779735|ref|YP_006544208.1| - 0.0026 17.2 0.0 0.0032 16.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|397779735|ref|YP_006544208.1| - 0.015 14.6 0.1 3.7 6.9 0.0 2.3 1 1 1 2 2 2 0 Flavodoxin Peptidase_S13 PF02113.10 gi|397779735|ref|YP_006544208.1| - 0.025 13.0 0.0 0.074 11.5 0.0 1.7 1 1 0 1 1 1 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family SBP_bac_5 PF00496.17 gi|397779735|ref|YP_006544208.1| - 0.034 12.9 0.0 0.045 12.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle adh_short PF00106.20 gi|397779735|ref|YP_006544208.1| - 0.06 13.2 0.2 3.6 7.4 0.0 2.5 2 1 1 3 3 3 0 short chain dehydrogenase TPR_11 PF13414.1 gi|397779736|ref|YP_006544209.1| - 1.1e-46 156.3 8.6 7.5e-18 63.9 0.0 3.1 2 1 3 5 5 5 4 TPR repeat TPR_1 PF00515.23 gi|397779736|ref|YP_006544209.1| - 8.9e-38 126.3 0.7 2.4e-09 36.3 0.0 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|397779736|ref|YP_006544209.1| - 3e-34 114.1 6.2 2e-08 33.5 0.0 4.9 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|397779736|ref|YP_006544209.1| - 1.1e-23 81.5 10.1 4.6e-07 29.8 0.0 5.3 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|397779736|ref|YP_006544209.1| - 1.2e-22 79.9 7.3 1.5e-12 47.7 0.1 4.9 3 1 2 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|397779736|ref|YP_006544209.1| - 2.8e-22 76.9 0.8 8.9e-07 28.6 0.0 5.3 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|397779736|ref|YP_006544209.1| - 1.4e-19 69.8 6.2 1.4e-08 34.5 0.1 3.5 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|397779736|ref|YP_006544209.1| - 2.1e-17 61.4 0.0 0.00089 18.8 0.0 4.8 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|397779736|ref|YP_006544209.1| - 3.2e-17 62.6 1.1 1.3e-07 31.8 0.3 3.6 3 1 2 5 5 4 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|397779736|ref|YP_006544209.1| - 1.2e-16 60.2 10.2 4.8e-09 35.9 0.1 2.9 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|397779736|ref|YP_006544209.1| - 2.4e-16 58.1 2.7 0.00088 18.8 0.0 4.9 4 1 0 4 4 4 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|397779736|ref|YP_006544209.1| - 7.1e-10 38.6 0.0 0.023 14.5 0.0 4.2 4 0 0 4 4 4 3 Fis1 C-terminal tetratricopeptide repeat Apc3 PF12895.2 gi|397779736|ref|YP_006544209.1| - 1.7e-08 34.4 0.3 0.00035 20.6 0.0 2.9 1 1 2 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|397779736|ref|YP_006544209.1| - 3.6e-07 30.2 1.5 0.67 10.5 0.0 4.6 5 0 0 5 5 4 2 Tetratricopeptide repeat MIT PF04212.13 gi|397779736|ref|YP_006544209.1| - 0.0013 18.5 0.3 0.51 10.2 0.0 3.4 3 0 0 3 3 3 1 MIT (microtubule interacting and transport) domain TPR_15 PF13429.1 gi|397779736|ref|YP_006544209.1| - 0.0039 16.3 0.4 0.037 13.0 0.0 2.9 2 1 0 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|397779736|ref|YP_006544209.1| - 0.047 12.4 0.0 0.65 8.6 0.0 2.1 1 1 2 3 3 3 0 NMDA receptor-regulated protein 1 DUF3856 PF12968.2 gi|397779736|ref|YP_006544209.1| - 0.055 13.2 0.5 5.1 6.9 0.1 3.3 1 1 2 3 3 3 0 Domain of Unknown Function (DUF3856) TPR_3 PF07720.7 gi|397779736|ref|YP_006544209.1| - 0.6 9.9 7.6 0.69 9.7 0.0 3.5 4 1 0 4 4 3 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|397779736|ref|YP_006544209.1| - 0.77 9.7 18.5 2.5 8.1 0.1 5.2 6 0 0 6 6 6 0 Tetratricopeptide repeat PPR PF01535.15 gi|397779736|ref|YP_006544209.1| - 2.9 8.0 5.5 4.7 7.3 0.1 3.3 4 0 0 4 4 2 0 PPR repeat tRNA-synt_1c PF00749.16 gi|397779737|ref|YP_006544210.1| - 2.3e-73 246.6 0.0 2.8e-73 246.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|397779737|ref|YP_006544210.1| - 9.1e-27 93.8 0.0 1.5e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1d PF00750.14 gi|397779737|ref|YP_006544210.1| - 0.016 14.0 0.0 0.021 13.6 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|397779737|ref|YP_006544210.1| - 0.036 12.7 0.0 1.2 7.7 0.0 2.5 2 1 1 3 3 3 0 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|397779737|ref|YP_006544210.1| - 0.065 11.8 0.0 4.7 5.7 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (M) polyprenyl_synt PF00348.12 gi|397779738|ref|YP_006544211.1| - 2.4e-59 200.2 0.3 3e-59 200.0 0.2 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|397779739|ref|YP_006544212.1| - 4.3e-16 59.1 0.1 1.7e-15 57.1 0.1 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|397779739|ref|YP_006544212.1| - 2.3e-09 36.9 0.9 2.3e-09 36.9 0.6 2.0 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|397779739|ref|YP_006544212.1| - 2e-07 30.7 0.2 6.1e-07 29.1 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain FMN_dh PF01070.13 gi|397779740|ref|YP_006544213.1| - 5.9e-30 104.3 0.0 9.1e-19 67.5 0.0 2.0 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|397779740|ref|YP_006544213.1| - 0.00011 21.1 0.2 0.00053 18.9 0.1 2.1 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|397779740|ref|YP_006544213.1| - 0.00029 19.8 1.7 0.00063 18.7 1.2 1.5 1 1 0 1 1 1 1 Conserved region in glutamate synthase NMO PF03060.10 gi|397779740|ref|YP_006544213.1| - 0.0065 15.6 0.2 0.018 14.2 0.2 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|397779740|ref|YP_006544213.1| - 0.73 8.7 3.0 0.52 9.2 0.1 2.1 3 0 0 3 3 3 0 Dihydroorotate dehydrogenase AA_kinase PF00696.23 gi|397779741|ref|YP_006544214.1| - 5.6e-37 127.5 3.2 6.5e-37 127.3 2.2 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.21 gi|397779742|ref|YP_006544215.1| - 2.8e-15 56.1 0.2 2.8e-15 56.1 0.1 2.1 2 1 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|397779742|ref|YP_006544215.1| - 8.8e-11 41.8 1.1 2.4e-10 40.4 0.7 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|397779742|ref|YP_006544215.1| - 0.0042 16.3 0.0 0.011 14.9 0.0 1.8 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Memo PF01875.12 gi|397779743|ref|YP_006544216.1| - 2.3e-71 239.8 0.0 2.7e-71 239.6 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|397779743|ref|YP_006544216.1| - 0.034 13.1 0.0 0.046 12.6 0.0 1.2 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.15 gi|397779744|ref|YP_006544217.1| - 1.2e-41 142.3 0.4 9e-20 70.8 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Avirulence PF03377.8 gi|397779744|ref|YP_006544217.1| - 0.0052 15.5 0.0 0.0057 15.4 0.0 1.1 1 0 0 1 1 1 1 Xanthomonas avirulence protein, Avr/PthA PHP PF02811.14 gi|397779744|ref|YP_006544217.1| - 0.017 14.8 0.0 0.047 13.4 0.0 1.7 2 0 0 2 2 2 0 PHP domain Peripla_BP_4 PF13407.1 gi|397779744|ref|YP_006544217.1| - 0.076 12.3 1.4 0.46 9.8 0.3 2.0 1 1 1 2 2 2 0 Periplasmic binding protein domain Enolase_C PF00113.17 gi|397779745|ref|YP_006544218.1| - 8.9e-74 248.1 0.1 1.2e-73 247.6 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|397779745|ref|YP_006544218.1| - 5.2e-37 126.7 0.0 1.5e-36 125.2 0.0 1.9 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.1 gi|397779745|ref|YP_006544218.1| - 8.9e-05 22.4 0.3 0.0006 19.7 0.0 2.2 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|397779745|ref|YP_006544218.1| - 0.00017 20.6 0.2 0.00031 19.7 0.1 1.5 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|397779745|ref|YP_006544218.1| - 0.00074 20.0 0.2 0.0018 18.7 0.1 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Lipocalin_5 PF13924.1 gi|397779745|ref|YP_006544218.1| - 0.14 11.8 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Lipocalin-like domain Ribosomal_S9 PF00380.14 gi|397779746|ref|YP_006544219.1| - 2e-33 115.2 0.0 2.2e-33 115.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|397779747|ref|YP_006544220.1| - 4.4e-22 78.4 0.0 5.5e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|397779748|ref|YP_006544221.1| - 4.3e-16 59.4 0.0 5.7e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|397779749|ref|YP_006544222.1| - 9.6e-29 99.8 0.0 3e-28 98.2 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|397779749|ref|YP_006544222.1| - 2.2e-16 58.7 0.0 2.7e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.22 gi|397779749|ref|YP_006544222.1| - 2.8e-07 29.8 13.6 4.8e-06 25.9 2.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397779749|ref|YP_006544222.1| - 1.1e-05 25.6 9.6 1.1e-05 25.6 6.7 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397779749|ref|YP_006544222.1| - 1.6e-05 24.5 10.5 1.6e-05 24.5 7.3 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397779749|ref|YP_006544222.1| - 0.00035 20.7 10.6 0.00035 20.7 7.3 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397779749|ref|YP_006544222.1| - 0.00047 19.9 3.6 0.00047 19.9 2.5 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|397779749|ref|YP_006544222.1| - 0.0037 17.0 4.0 0.0037 17.0 2.8 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|397779749|ref|YP_006544222.1| - 0.0046 17.1 2.6 0.0046 17.1 1.8 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|397779749|ref|YP_006544222.1| - 0.0092 15.8 4.0 0.0092 15.8 2.8 3.2 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397779749|ref|YP_006544222.1| - 0.01 16.5 13.4 0.023 15.4 0.9 3.2 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|397779749|ref|YP_006544222.1| - 0.029 14.9 5.7 0.029 14.9 3.9 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|397779749|ref|YP_006544222.1| - 0.046 14.2 17.8 0.16 12.5 6.6 3.5 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|397779749|ref|YP_006544222.1| - 0.051 13.6 17.0 0.094 12.7 7.9 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397779749|ref|YP_006544222.1| - 1.7 9.1 14.0 0.89 10.0 3.6 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Ribosomal_S11 PF00411.14 gi|397779750|ref|YP_006544223.1| - 1.1e-43 147.8 5.7 2.8e-43 146.5 4.0 1.5 1 1 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.5 gi|397779750|ref|YP_006544223.1| - 0.043 13.2 0.7 0.057 12.8 0.5 1.3 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) S4 PF01479.20 gi|397779751|ref|YP_006544224.1| - 1.6e-13 49.8 1.2 1.8e-13 49.6 0.1 1.7 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|397779751|ref|YP_006544224.1| - 0.00013 22.3 2.3 0.00013 22.3 1.6 2.0 2 1 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.17 gi|397779752|ref|YP_006544225.1| - 4e-31 107.6 0.4 4.9e-31 107.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|397779752|ref|YP_006544225.1| - 0.03 12.8 0.0 0.033 12.7 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) DS PF01916.12 gi|397779753|ref|YP_006544226.1| - 3.1e-66 223.5 0.0 3.6e-66 223.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase CBS PF00571.23 gi|397779754|ref|YP_006544227.1| - 8.2e-34 115.1 12.5 3e-15 55.7 0.3 4.1 4 0 0 4 4 4 4 CBS domain Toprim PF01751.17 gi|397779754|ref|YP_006544227.1| - 0.029 14.3 0.0 0.068 13.1 0.0 1.7 1 0 0 1 1 1 0 Toprim domain DUF3659 PF12396.3 gi|397779754|ref|YP_006544227.1| - 0.054 13.1 0.3 16 5.2 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) CBS PF00571.23 gi|397779755|ref|YP_006544228.1| - 2.4e-52 174.4 12.1 5.7e-15 54.8 0.2 4.3 4 0 0 4 4 4 4 CBS domain Calci_bind_CcbP PF11535.3 gi|397779755|ref|YP_006544228.1| - 0.065 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 Calcium binding CBS PF00571.23 gi|397779756|ref|YP_006544229.1| - 5.1e-52 173.4 14.0 7.1e-14 51.3 0.1 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|397779757|ref|YP_006544230.1| - 3.7e-41 138.6 18.0 1.2e-14 53.7 2.1 4.1 4 0 0 4 4 4 4 CBS domain GAF_2 PF13185.1 gi|397779757|ref|YP_006544230.1| - 0.00027 21.4 0.2 0.001 19.6 0.0 1.9 1 1 1 2 2 2 1 GAF domain CBS PF00571.23 gi|397779758|ref|YP_006544231.1| - 6.3e-22 77.0 5.7 1.7e-13 50.0 1.2 2.3 2 0 0 2 2 2 2 CBS domain zf-FPG_IleRS PF06827.9 gi|397779758|ref|YP_006544231.1| - 0.0057 16.2 0.3 0.012 15.1 0.2 1.6 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS RecR PF02132.10 gi|397779758|ref|YP_006544231.1| - 0.019 14.4 0.7 0.067 12.6 0.5 2.0 1 0 0 1 1 1 0 RecR protein OrfB_Zn_ribbon PF07282.6 gi|397779758|ref|YP_006544231.1| - 0.021 14.4 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain MMR_HSR1 PF01926.18 gi|397779759|ref|YP_006544232.1| - 5.9e-16 58.4 0.0 8.1e-16 58.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|397779759|ref|YP_006544232.1| - 2e-11 43.7 0.2 0.00015 21.2 0.0 2.7 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|397779759|ref|YP_006544232.1| - 6.3e-07 28.7 0.0 0.0027 16.9 0.0 2.5 2 1 0 2 2 2 2 ADP-ribosylation factor family Miro PF08477.8 gi|397779759|ref|YP_006544232.1| - 5.9e-06 26.7 0.0 0.00018 21.9 0.0 2.2 1 1 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|397779759|ref|YP_006544232.1| - 6.7e-06 25.4 0.0 0.12 11.5 0.0 2.4 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|397779759|ref|YP_006544232.1| - 4.5e-05 22.7 0.1 0.00034 19.9 0.0 2.2 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_17 PF13207.1 gi|397779759|ref|YP_006544232.1| - 0.0004 21.1 0.2 0.0013 19.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|397779759|ref|YP_006544232.1| - 0.0029 17.8 0.0 0.0047 17.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain Septin PF00735.13 gi|397779759|ref|YP_006544232.1| - 0.0035 16.4 0.0 0.0046 16.0 0.0 1.2 1 0 0 1 1 1 1 Septin Dynamin_N PF00350.18 gi|397779759|ref|YP_006544232.1| - 0.0038 17.0 0.0 1.6 8.5 0.0 2.2 1 1 1 2 2 2 1 Dynamin family DUF258 PF03193.11 gi|397779759|ref|YP_006544232.1| - 0.0054 15.9 0.0 0.0077 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ArgK PF03308.11 gi|397779759|ref|YP_006544232.1| - 0.0057 15.4 0.0 0.2 10.4 0.0 2.6 2 1 0 2 2 2 1 ArgK protein AAA_16 PF13191.1 gi|397779759|ref|YP_006544232.1| - 0.0067 16.4 0.0 0.01 15.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|397779759|ref|YP_006544232.1| - 0.008 15.8 0.0 0.2 11.3 0.0 2.2 2 0 0 2 2 2 1 NACHT domain RNA_helicase PF00910.17 gi|397779759|ref|YP_006544232.1| - 0.014 15.5 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA PF00004.24 gi|397779759|ref|YP_006544232.1| - 0.016 15.3 0.0 0.033 14.3 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PPV_E1_C PF00519.12 gi|397779759|ref|YP_006544232.1| - 0.02 13.4 0.0 0.032 12.8 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase AAA_19 PF13245.1 gi|397779759|ref|YP_006544232.1| - 0.023 14.4 1.8 0.25 11.1 0.0 2.6 3 0 0 3 3 2 0 Part of AAA domain MobB PF03205.9 gi|397779759|ref|YP_006544232.1| - 0.025 14.2 0.0 0.054 13.2 0.0 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Guanylate_kin PF00625.16 gi|397779759|ref|YP_006544232.1| - 0.027 13.9 0.0 0.044 13.2 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase AAA_22 PF13401.1 gi|397779759|ref|YP_006544232.1| - 0.035 14.2 0.0 0.055 13.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|397779759|ref|YP_006544232.1| - 0.038 13.4 0.0 0.24 10.8 0.0 2.2 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|397779759|ref|YP_006544232.1| - 0.055 13.1 0.0 0.087 12.5 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase Parvo_NS1 PF01057.12 gi|397779759|ref|YP_006544232.1| - 0.076 11.8 0.0 0.13 11.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PRK PF00485.13 gi|397779759|ref|YP_006544232.1| - 0.089 12.3 0.0 0.51 9.8 0.0 2.1 2 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.22 gi|397779759|ref|YP_006544232.1| - 0.1 12.9 0.0 0.16 12.2 0.0 1.4 1 1 0 1 1 1 0 ABC transporter NTPase_1 PF03266.10 gi|397779759|ref|YP_006544232.1| - 0.1 12.2 0.0 0.36 10.5 0.0 2.0 1 1 0 1 1 1 0 NTPase NB-ARC PF00931.17 gi|397779759|ref|YP_006544232.1| - 0.11 11.3 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.1 gi|397779759|ref|YP_006544232.1| - 0.11 12.4 0.0 0.41 10.5 0.0 2.0 1 1 2 3 3 3 0 AAA domain AAA_10 PF12846.2 gi|397779759|ref|YP_006544232.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|397779759|ref|YP_006544232.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|397779759|ref|YP_006544232.1| - 0.13 11.8 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2073 PF09846.4 gi|397779760|ref|YP_006544233.1| - 6.8e-46 154.2 0.1 8e-46 153.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF2072 PF09845.4 gi|397779761|ref|YP_006544234.1| - 6.5e-46 155.4 1.2 7.5e-46 155.3 0.8 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) zinc_ribbon_2 PF13240.1 gi|397779761|ref|YP_006544234.1| - 0.00021 20.6 4.7 0.00032 20.0 3.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DUF1451 PF07295.6 gi|397779761|ref|YP_006544234.1| - 0.0093 15.7 3.3 0.0098 15.6 0.4 2.0 1 1 2 3 3 3 1 Protein of unknown function (DUF1451) DUF3141 PF11339.3 gi|397779761|ref|YP_006544234.1| - 0.02 13.2 0.0 0.024 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) HypA PF01155.14 gi|397779761|ref|YP_006544234.1| - 0.029 14.0 0.6 0.06 13.0 0.4 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF4162 PF13732.1 gi|397779761|ref|YP_006544234.1| - 0.049 14.1 0.1 0.071 13.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) zf-C2H2_6 PF13912.1 gi|397779761|ref|YP_006544234.1| - 0.058 13.3 0.3 0.058 13.3 0.2 1.6 2 0 0 2 2 1 0 C2H2-type zinc finger DZR PF12773.2 gi|397779761|ref|YP_006544234.1| - 0.098 12.4 0.9 0.16 11.7 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|397779761|ref|YP_006544234.1| - 0.16 11.9 5.9 1 9.3 4.1 2.2 1 1 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|397779761|ref|YP_006544234.1| - 0.17 11.5 1.9 5.6 6.6 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|397779761|ref|YP_006544234.1| - 0.34 10.2 3.3 4.7 6.6 0.0 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|397779761|ref|YP_006544234.1| - 0.53 10.6 2.2 0.76 10.1 0.1 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|397779761|ref|YP_006544234.1| - 0.85 8.9 6.8 5.1 6.4 4.7 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|397779761|ref|YP_006544234.1| - 1.1 9.6 4.3 2.4 8.5 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-tcix PF14952.1 gi|397779761|ref|YP_006544234.1| - 6.5 6.1 6.4 14 5.0 0.9 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Radical_SAM PF04055.16 gi|397779762|ref|YP_006544235.1| - 1.4e-06 28.5 0.0 3e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|397779762|ref|YP_006544235.1| - 0.0055 16.7 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|397779762|ref|YP_006544235.1| - 0.048 13.7 0.0 0.086 12.9 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF1628 PF07790.6 gi|397779763|ref|YP_006544236.1| - 1.3e-09 38.6 0.2 2.2e-09 37.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) FHA PF00498.21 gi|397779763|ref|YP_006544236.1| - 0.14 12.2 0.0 1.1 9.4 0.0 2.0 2 0 0 2 2 2 0 FHA domain DUF1628 PF07790.6 gi|397779764|ref|YP_006544237.1| - 1.6e-15 57.6 0.1 5e-15 56.0 0.1 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|397779765|ref|YP_006544238.1| - 0.0044 17.7 0.6 0.05 14.3 0.1 2.6 2 1 1 3 3 3 1 Protein of unknown function (DUF1628) Radical_SAM PF04055.16 gi|397779766|ref|YP_006544239.1| - 3.1e-07 30.7 0.0 5.5e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|397779766|ref|YP_006544239.1| - 3.7e-06 26.9 0.0 6.8e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|397779766|ref|YP_006544239.1| - 1.2e-05 25.4 0.0 1.8e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Prenyltransf PF01255.14 gi|397779767|ref|YP_006544240.1| - 1.2e-68 230.6 0.0 1.7e-68 230.1 0.0 1.2 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.14 gi|397779768|ref|YP_006544241.1| - 4.3e-24 84.8 0.0 3.6e-23 81.8 0.0 1.9 1 1 1 2 2 2 1 Putative undecaprenyl diphosphate synthase HHH_8 PF14716.1 gi|397779769|ref|YP_006544242.1| - 9.8e-18 64.1 0.6 9.8e-18 64.1 0.4 3.2 4 0 0 4 4 4 1 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.1 gi|397779769|ref|YP_006544242.1| - 3.1e-14 52.4 0.0 7.2e-14 51.2 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb PHP PF02811.14 gi|397779769|ref|YP_006544242.1| - 3.2e-13 49.8 0.0 9.7e-13 48.2 0.0 1.7 1 1 1 2 2 2 1 PHP domain HHH_5 PF14520.1 gi|397779769|ref|YP_006544242.1| - 2.9e-12 46.5 2.2 2.3e-07 30.8 0.2 4.0 3 1 1 4 4 4 2 Helix-hairpin-helix domain DNA_pol_B_palm PF14792.1 gi|397779769|ref|YP_006544242.1| - 9.9e-06 25.5 0.0 2.6e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase beta palm HHH PF00633.18 gi|397779769|ref|YP_006544242.1| - 0.00016 21.1 0.2 0.28 10.9 0.0 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|397779769|ref|YP_006544242.1| - 0.0011 18.4 0.1 0.13 11.8 0.0 3.6 4 0 0 4 4 4 1 Fingers domain of DNA polymerase lambda HHH_3 PF12836.2 gi|397779769|ref|YP_006544242.1| - 0.0056 16.5 0.3 0.47 10.4 0.0 2.9 2 1 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|397779769|ref|YP_006544242.1| - 0.079 12.8 0.0 18 5.3 0.0 2.4 1 1 1 2 2 2 0 Pathogenicity locus HHH_2 PF12826.2 gi|397779769|ref|YP_006544242.1| - 0.082 12.7 0.2 1.5 8.7 0.1 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|397779769|ref|YP_006544242.1| - 0.11 12.6 1.1 9.5 6.4 0.0 3.2 3 0 0 3 3 3 0 IMS family HHH motif Fe_dep_repr_C PF02742.10 gi|397779770|ref|YP_006544243.1| - 1.8e-19 69.2 0.0 5.3e-19 67.6 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.9 gi|397779770|ref|YP_006544243.1| - 5.1e-14 51.9 0.2 1e-13 50.9 0.1 1.6 1 0 0 1 1 1 1 FeoA domain Fe_dep_repress PF01325.14 gi|397779770|ref|YP_006544243.1| - 1.2e-08 34.7 0.0 2.1e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|397779770|ref|YP_006544243.1| - 2.2e-05 24.6 0.1 6.1e-05 23.2 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|397779770|ref|YP_006544243.1| - 4.8e-05 22.8 0.2 0.00011 21.7 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|397779770|ref|YP_006544243.1| - 0.0013 18.3 0.1 0.0032 17.0 0.1 1.7 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|397779770|ref|YP_006544243.1| - 0.0037 17.3 0.0 0.0081 16.2 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.16 gi|397779770|ref|YP_006544243.1| - 0.037 13.4 0.2 0.077 12.4 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family CDC48_N PF02359.13 gi|397779770|ref|YP_006544243.1| - 0.043 13.7 0.0 5.3 7.0 0.0 2.7 3 0 0 3 3 3 0 Cell division protein 48 (CDC48), N-terminal domain MarR PF01047.17 gi|397779770|ref|YP_006544243.1| - 0.045 13.4 0.0 0.088 12.5 0.0 1.4 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|397779770|ref|YP_006544243.1| - 0.064 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FeoB_N PF02421.13 gi|397779771|ref|YP_006544244.1| - 1.6e-51 173.6 0.1 2.5e-51 173.0 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|397779771|ref|YP_006544244.1| - 3.2e-24 84.9 28.6 6.3e-13 48.5 2.2 3.4 3 1 1 4 4 4 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|397779771|ref|YP_006544244.1| - 2.6e-16 59.6 0.0 4.2e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|397779771|ref|YP_006544244.1| - 1.4e-14 53.2 1.2 1.4e-14 53.2 0.8 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus Dynamin_N PF00350.18 gi|397779771|ref|YP_006544244.1| - 0.00012 21.9 0.7 0.0037 17.1 0.0 2.3 1 1 1 2 2 2 1 Dynamin family AIG1 PF04548.11 gi|397779771|ref|YP_006544244.1| - 0.00082 18.5 0.0 0.0013 17.8 0.0 1.3 1 0 0 1 1 1 1 AIG1 family SRPRB PF09439.5 gi|397779771|ref|YP_006544244.1| - 0.0029 16.8 0.0 0.0051 16.0 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|397779771|ref|YP_006544244.1| - 0.019 15.4 0.0 0.032 14.7 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein KaiC PF06745.8 gi|397779772|ref|YP_006544245.1| - 0.00072 18.7 0.0 0.042 12.9 0.0 2.2 2 1 0 2 2 2 1 KaiC DUF835 PF05763.7 gi|397779772|ref|YP_006544245.1| - 0.007 15.9 0.1 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF257 PF03192.8 gi|397779772|ref|YP_006544245.1| - 0.078 12.2 0.2 0.11 11.8 0.1 1.1 1 0 0 1 1 1 0 Pyrococcus protein of unknown function, DUF257 ITI_HC_C PF06668.7 gi|397779772|ref|YP_006544245.1| - 0.1 12.0 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Inter-alpha-trypsin inhibitor heavy chain C-terminus TP_methylase PF00590.15 gi|397779773|ref|YP_006544246.1| - 1.6e-19 70.4 0.1 1.9e-19 70.2 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF357 PF04010.8 gi|397779774|ref|YP_006544247.1| - 1.1e-45 153.2 0.8 3.5e-22 77.8 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF357) DUF3556 PF12077.3 gi|397779774|ref|YP_006544247.1| - 0.086 10.8 0.0 0.11 10.4 0.0 1.0 1 0 0 1 1 1 0 Transmembrane protein of unknown function (DUF3556) UPF0104 PF03706.8 gi|397779775|ref|YP_006544248.1| - 8.6e-44 149.9 30.2 1.1e-43 149.5 20.9 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF4006 PF13179.1 gi|397779775|ref|YP_006544248.1| - 0.097 12.2 1.3 0.3 10.6 0.0 2.5 3 0 0 3 3 3 0 Family of unknown function (DUF4006) Strabismus PF06638.6 gi|397779775|ref|YP_006544248.1| - 0.31 9.2 1.6 0.48 8.6 1.1 1.2 1 0 0 1 1 1 0 Strabismus protein DUF1426 PF07234.6 gi|397779775|ref|YP_006544248.1| - 4 7.1 8.4 0.25 11.0 1.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1426) DNase-RNase PF02577.9 gi|397779776|ref|YP_006544249.1| - 4.4e-38 129.5 0.0 5.1e-38 129.3 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease HTH_29 PF13551.1 gi|590000617|ref|YP_009001394.1| - 2.8e-24 85.4 0.4 5.1e-24 84.5 0.1 1.5 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|590000617|ref|YP_009001394.1| - 8.8e-10 39.2 0.7 3e-09 37.5 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|590000617|ref|YP_009001394.1| - 2.4e-06 26.9 0.0 0.00033 20.2 0.0 2.6 2 0 0 2 2 2 2 Homeodomain-like domain LZ_Tnp_IS481 PF13011.1 gi|590000617|ref|YP_009001394.1| - 0.032 14.5 0.0 0.074 13.4 0.0 1.6 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 DDE_3 PF13358.1 gi|590000618|ref|YP_006544250.2| - 5.4e-25 87.8 0.0 8.2e-25 87.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease PRA-PH PF01503.12 gi|397779778|ref|YP_006544251.1| - 2.3e-11 43.7 0.8 3.5e-11 43.2 0.6 1.4 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|397779778|ref|YP_006544251.1| - 0.0049 16.7 0.3 0.0077 16.1 0.2 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain KH_2 PF07650.12 gi|397779779|ref|YP_006544252.1| - 2.3e-21 75.1 2.5 3.9e-14 51.9 0.4 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|397779779|ref|YP_006544252.1| - 5.5e-14 51.7 0.5 6.2e-13 48.3 0.1 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|397779779|ref|YP_006544252.1| - 1.4e-10 40.6 0.4 4.9e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|397779779|ref|YP_006544252.1| - 3.2e-07 29.9 2.9 6.7e-05 22.4 0.2 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|397779779|ref|YP_006544252.1| - 0.025 14.2 6.6 0.11 12.1 0.5 2.6 2 0 0 2 2 2 0 KH domain PAS_4 PF08448.5 gi|397779780|ref|YP_006544253.1| - 4.9e-26 90.9 1.5 1.3e-15 57.3 0.1 3.1 2 1 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|397779780|ref|YP_006544253.1| - 1.7e-21 76.0 0.1 3e-21 75.2 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|397779780|ref|YP_006544253.1| - 7e-19 68.1 0.0 7.4e-09 35.9 0.0 2.7 2 1 0 2 2 2 2 PAS domain PAS PF00989.19 gi|397779780|ref|YP_006544253.1| - 1.4e-15 57.0 0.0 1.2e-05 25.0 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|397779780|ref|YP_006544253.1| - 0.00017 21.5 0.0 0.0061 16.6 0.0 2.6 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|397779780|ref|YP_006544253.1| - 0.0056 16.3 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_10 PF13596.1 gi|397779780|ref|YP_006544253.1| - 0.012 15.8 0.0 2 8.6 0.0 2.6 2 0 0 2 2 2 0 PAS domain PAS_7 PF12860.2 gi|397779780|ref|YP_006544253.1| - 0.016 15.1 0.0 0.19 11.7 0.0 2.4 2 0 0 2 2 2 0 PAS fold PAS_8 PF13188.1 gi|397779780|ref|YP_006544253.1| - 0.021 14.6 0.0 0.13 12.2 0.0 2.3 2 0 0 2 2 2 0 PAS domain HATPase_c_3 PF13589.1 gi|397779780|ref|YP_006544253.1| - 0.098 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IclR PF01614.13 gi|397779780|ref|YP_006544253.1| - 0.15 11.7 0.5 1.5 8.4 0.0 2.7 3 0 0 3 3 3 0 Bacterial transcriptional regulator DUF432 PF04254.8 gi|397779781|ref|YP_006544254.1| - 3.4e-40 136.7 0.1 4.5e-40 136.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.13 gi|397779782|ref|YP_006544255.1| - 3.8e-59 199.4 1.2 3.8e-59 199.4 0.8 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel Lactamase_B PF00753.22 gi|397779783|ref|YP_006544256.1| - 5e-10 39.3 3.9 6.5e-10 38.9 2.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|397779783|ref|YP_006544256.1| - 1.1e-05 25.1 0.3 1.6e-05 24.5 0.2 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain SIMPL PF04402.9 gi|397779784|ref|YP_006544257.1| - 5.5e-45 153.8 8.5 6.3e-45 153.6 5.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF1657 PF07870.6 gi|397779784|ref|YP_006544257.1| - 0.078 12.6 0.5 0.078 12.6 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) OmpA PF00691.15 gi|397779784|ref|YP_006544257.1| - 0.15 12.4 1.4 0.98 9.8 0.1 2.3 1 1 1 2 2 2 0 OmpA family Ion_trans_2 PF07885.11 gi|397779785|ref|YP_006544258.1| - 6.5e-14 51.4 1.4 6.5e-14 51.4 1.0 2.9 2 2 0 2 2 2 1 Ion channel DUF1345 PF07077.6 gi|397779785|ref|YP_006544258.1| - 2.6 7.5 13.9 0.8 9.2 3.7 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1345) DUF3353 PF11833.3 gi|397779785|ref|YP_006544258.1| - 7.5 5.9 10.2 2.6 7.4 5.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) Pkinase PF00069.20 gi|397779786|ref|YP_006544259.1| - 5.7e-43 146.9 0.0 7.3e-43 146.5 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|397779786|ref|YP_006544259.1| - 1.2e-29 103.1 0.0 1.7e-29 102.7 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.1 gi|397779786|ref|YP_006544259.1| - 2.4e-05 23.4 0.0 0.00021 20.3 0.0 1.9 1 1 1 2 2 2 1 Kinase-like APH PF01636.18 gi|397779786|ref|YP_006544259.1| - 0.0002 21.1 0.3 0.0073 16.0 0.0 2.7 1 1 2 3 3 3 1 Phosphotransferase enzyme family ABC1 PF03109.11 gi|397779786|ref|YP_006544259.1| - 0.036 14.0 0.0 0.064 13.2 0.0 1.3 1 0 0 1 1 1 0 ABC1 family MSA_2 PF00985.12 gi|397779786|ref|YP_006544259.1| - 7.5 6.6 12.8 12 5.9 8.9 1.2 1 0 0 1 1 1 0 Merozoite Surface Antigen 2 (MSA-2) family FHA PF00498.21 gi|397779787|ref|YP_006544260.1| - 2.2e-14 53.3 0.0 3.5e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 FHA domain HTH_5 PF01022.15 gi|397779787|ref|YP_006544260.1| - 6.9e-06 25.6 0.2 1.7e-05 24.4 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|397779787|ref|YP_006544260.1| - 3.3e-05 23.6 0.1 0.00011 21.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|397779787|ref|YP_006544260.1| - 0.0024 17.5 0.1 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|397779787|ref|YP_006544260.1| - 0.0029 17.3 0.0 0.0057 16.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|397779787|ref|YP_006544260.1| - 0.024 14.0 0.3 0.052 12.9 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|397779787|ref|YP_006544260.1| - 0.11 12.3 0.1 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) RhodobacterPufX PF11511.3 gi|397779788|ref|YP_006544261.1| - 0.14 11.6 0.1 0.22 10.9 0.1 1.3 1 0 0 1 1 1 0 Intrinsic membrane protein PufX SpoIIIAC PF06686.6 gi|397779790|ref|YP_006544263.1| - 0.11 12.2 0.7 0.11 12.2 0.5 3.9 3 1 1 4 4 4 0 Stage III sporulation protein AC/AD protein family DNA_ligase_A_M PF01068.16 gi|397779791|ref|YP_006544264.1| - 4.8e-52 176.2 0.0 6.1e-52 175.9 0.0 1.1 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|397779791|ref|YP_006544264.1| - 3.3e-39 134.5 0.0 5e-39 133.9 0.0 1.3 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|397779791|ref|YP_006544264.1| - 3e-22 78.8 0.0 7e-22 77.6 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|397779791|ref|YP_006544264.1| - 0.0021 17.6 3.0 0.036 13.7 0.0 2.4 2 0 0 2 2 2 1 DNA ligase OB-like domain DNA_pol_B_thumb PF14791.1 gi|397779792|ref|YP_006544265.1| - 1.3e-25 88.8 0.3 3.4e-25 87.5 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|397779792|ref|YP_006544265.1| - 8.6e-24 83.5 2.0 2.6e-18 65.9 0.1 3.7 2 1 1 3 3 3 3 Helix-hairpin-helix domain HHH_5 PF14520.1 gi|397779792|ref|YP_006544265.1| - 4.3e-17 62.0 7.6 3.9e-11 42.9 0.4 3.7 4 0 0 4 4 4 2 Helix-hairpin-helix domain PHP PF02811.14 gi|397779792|ref|YP_006544265.1| - 1.3e-13 51.0 0.0 2.3e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 PHP domain DNA_pol_lambd_f PF10391.4 gi|397779792|ref|YP_006544265.1| - 5.3e-05 22.6 0.0 0.00034 20.1 0.0 2.3 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|397779792|ref|YP_006544265.1| - 0.00017 21.1 9.7 0.039 13.6 0.1 4.8 5 0 0 5 5 5 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|397779792|ref|YP_006544265.1| - 0.00035 20.6 0.1 0.0011 18.9 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase beta palm IMS_HHH PF11798.3 gi|397779792|ref|YP_006544265.1| - 0.00076 19.3 1.4 1.8 8.7 0.0 4.0 4 0 0 4 4 4 2 IMS family HHH motif Cdd1 PF11731.3 gi|397779792|ref|YP_006544265.1| - 0.038 13.9 0.1 0.71 9.8 0.0 2.8 1 1 1 2 2 2 0 Pathogenicity locus HHH_2 PF12826.2 gi|397779792|ref|YP_006544265.1| - 0.041 13.7 0.2 12 5.8 0.0 3.4 1 1 2 3 3 3 0 Helix-hairpin-helix motif Transposase_20 PF02371.11 gi|397779792|ref|YP_006544265.1| - 0.067 13.3 0.7 35 4.6 0.0 3.7 3 1 1 4 4 4 0 Transposase IS116/IS110/IS902 family FKBP_C PF00254.23 gi|397779793|ref|YP_006544266.1| - 2.9e-28 97.7 0.0 3.8e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Glycos_transf_1 PF00534.15 gi|397779794|ref|YP_006544267.1| - 2.1e-26 92.3 0.0 3.1e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397779794|ref|YP_006544267.1| - 2e-10 40.9 0.0 3.3e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|397779794|ref|YP_006544267.1| - 3.8e-08 33.5 0.0 6.8e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DEAD PF00270.24 gi|397779795|ref|YP_006544268.1| - 1.5e-47 161.2 0.0 5.3e-47 159.4 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|397779795|ref|YP_006544268.1| - 4.5e-27 93.7 0.5 1.4e-26 92.1 0.2 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DbpA PF03880.10 gi|397779795|ref|YP_006544268.1| - 8.9e-22 76.5 0.0 2.6e-21 75.0 0.0 1.8 1 0 0 1 1 1 1 DbpA RNA binding domain ResIII PF04851.10 gi|397779795|ref|YP_006544268.1| - 0.0043 16.8 0.0 0.0076 16.0 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Hyccin PF09790.4 gi|397779795|ref|YP_006544268.1| - 0.0079 15.0 0.0 0.013 14.3 0.0 1.2 1 0 0 1 1 1 1 Hyccin CMS1 PF14617.1 gi|397779795|ref|YP_006544268.1| - 0.031 13.3 0.0 0.071 12.1 0.0 1.5 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit Helicase_RecD PF05127.9 gi|397779795|ref|YP_006544268.1| - 0.039 13.5 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 Helicase UBA PF00627.26 gi|397779795|ref|YP_006544268.1| - 0.37 10.6 1.5 2.9 7.8 0.1 2.6 2 0 0 2 2 2 0 UBA/TS-N domain UDG PF03167.14 gi|397779796|ref|YP_006544269.1| - 7.4e-07 28.7 0.0 1.6e-06 27.6 0.0 1.5 2 0 0 2 2 2 1 Uracil DNA glycosylase superfamily TfuA PF07812.7 gi|397779796|ref|YP_006544269.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 TfuA-like protein HSP20 PF00011.16 gi|397779797|ref|YP_006544270.1| - 1.4e-14 53.7 0.1 3.4e-14 52.5 0.1 1.6 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|397779797|ref|YP_006544270.1| - 7.2e-05 22.4 4.7 0.0054 16.3 0.1 2.8 3 0 0 3 3 3 2 GvpH Qn_am_d_aIII PF09099.5 gi|397779797|ref|YP_006544270.1| - 0.031 14.5 0.3 0.087 13.1 0.2 1.6 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain III Tail_P2_I PF09684.5 gi|397779798|ref|YP_006544271.1| - 0.035 13.6 0.0 0.07 12.6 0.0 1.4 1 0 0 1 1 1 0 Phage tail protein (Tail_P2_I) Ins134_P3_kin PF05770.6 gi|590000619|ref|YP_009001395.1| - 0.02 13.9 0.3 12 4.8 0.0 3.1 1 1 2 3 3 3 0 Inositol 1, 3, 4-trisphosphate 5/6-kinase DUF1203 PF06718.6 gi|590000619|ref|YP_009001395.1| - 0.089 12.6 0.4 2.5 7.9 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1203) HIT PF01230.18 gi|397779799|ref|YP_006544272.1| - 1.4e-24 86.4 0.0 1.8e-24 86.1 0.0 1.0 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|397779799|ref|YP_006544272.1| - 4.8e-13 49.3 0.0 5.6e-13 49.1 0.0 1.0 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|397779799|ref|YP_006544272.1| - 0.0024 17.5 0.1 0.0098 15.5 0.1 1.8 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 GalP_UDP_tr_C PF02744.12 gi|397779799|ref|YP_006544272.1| - 0.016 14.7 0.0 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, C-terminal domain HNH_4 PF13395.1 gi|397779800|ref|YP_006544273.1| - 5.4e-12 45.1 0.0 9.7e-12 44.3 0.0 1.4 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.18 gi|397779800|ref|YP_006544273.1| - 0.032 14.1 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 HNH endonuclease PLDc_2 PF13091.1 gi|397779802|ref|YP_006544275.1| - 3.6e-11 42.8 0.0 5.2e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 PLD-like domain Regulator_TrmB PF11495.3 gi|397779802|ref|YP_006544275.1| - 0.00041 19.4 0.0 0.00057 18.9 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB NMD3 PF04981.8 gi|397779802|ref|YP_006544275.1| - 0.0013 17.9 1.1 0.0013 17.9 0.8 2.3 1 1 1 2 2 2 2 NMD3 family DZR PF12773.2 gi|397779802|ref|YP_006544275.1| - 0.0065 16.2 12.4 0.1 12.4 8.5 2.3 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|397779802|ref|YP_006544275.1| - 0.24 10.6 13.7 1.4 8.2 3.1 2.8 2 1 1 3 3 3 0 zinc-ribbon domain RNHCP PF12647.2 gi|397779802|ref|YP_006544275.1| - 0.25 11.1 3.5 0.62 9.9 2.4 1.7 1 1 0 1 1 1 0 RNHCP domain DUF2797 PF10977.3 gi|397779802|ref|YP_006544275.1| - 0.45 10.0 4.0 0.69 9.4 2.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2797) HypA PF01155.14 gi|397779802|ref|YP_006544275.1| - 0.72 9.5 9.4 1.2 8.8 0.3 2.3 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|397779802|ref|YP_006544275.1| - 1.8 8.1 12.7 6.5 6.3 0.1 3.3 2 1 1 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|397779802|ref|YP_006544275.1| - 2.3 7.9 10.6 11 5.7 0.3 2.5 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Cytochrom_c3_2 PF14537.1 gi|397779802|ref|YP_006544275.1| - 8.5 6.7 10.7 5.7 7.3 4.9 2.4 2 1 0 2 2 2 0 Cytochrome c3 Metallophos_2 PF12850.2 gi|397779803|ref|YP_006544276.1| - 3.5e-12 46.4 0.0 5.3e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|397779803|ref|YP_006544276.1| - 4.3e-11 42.5 0.1 1.3e-10 41.0 0.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase AAA_27 PF13514.1 gi|397779804|ref|YP_006544277.1| - 5.2e-126 421.8 36.2 3.7e-78 263.4 13.6 2.3 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|397779804|ref|YP_006544277.1| - 2.1e-15 57.5 1.7 2.1e-15 57.5 1.2 4.2 2 2 1 3 3 3 1 AAA domain SMC_N PF02463.14 gi|397779804|ref|YP_006544277.1| - 8.1e-10 38.2 0.1 0.00021 20.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Heme_oxygenase PF01126.15 gi|397779804|ref|YP_006544277.1| - 0.0057 16.2 0.7 0.021 14.3 0.3 2.0 1 1 0 1 1 1 1 Heme oxygenase AAA_29 PF13555.1 gi|397779804|ref|YP_006544277.1| - 0.0066 15.9 0.0 0.015 14.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4265 PF14085.1 gi|397779804|ref|YP_006544277.1| - 0.021 14.5 0.7 0.081 12.6 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4265) DUF3577 PF12101.3 gi|397779804|ref|YP_006544277.1| - 0.022 14.6 0.2 0.18 11.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3577) AAA_15 PF13175.1 gi|397779804|ref|YP_006544277.1| - 0.026 13.5 0.0 0.059 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_21 PF13304.1 gi|397779804|ref|YP_006544277.1| - 0.027 14.4 0.3 0.14 12.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|397779804|ref|YP_006544277.1| - 0.044 14.0 7.4 0.056 13.7 0.0 4.1 3 2 1 4 4 4 0 ABC transporter Scaffolding_pro PF11418.3 gi|397779804|ref|YP_006544277.1| - 0.2 11.9 5.8 0.79 10.0 0.5 3.9 3 0 0 3 3 3 0 Phi29 scaffolding protein DUF365 PF04033.7 gi|397779805|ref|YP_006544278.1| - 2.4e-44 149.2 0.5 3e-44 148.9 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF365) EVE PF01878.13 gi|397779806|ref|YP_006544279.1| - 3e-19 69.4 0.0 3.3e-19 69.3 0.0 1.0 1 0 0 1 1 1 1 EVE domain Dev_Cell_Death PF10539.4 gi|397779806|ref|YP_006544279.1| - 0.041 13.4 0.0 0.061 12.8 0.0 1.4 1 1 0 1 1 1 0 Development and cell death domain SNF2_N PF00176.18 gi|397779807|ref|YP_006544280.1| - 1.5e-18 66.6 0.0 3.3e-18 65.5 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|397779807|ref|YP_006544280.1| - 8.5e-15 54.3 0.0 3.5e-14 52.4 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|397779807|ref|YP_006544280.1| - 2.3e-08 34.0 0.0 0.0093 15.8 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|397779807|ref|YP_006544280.1| - 2.9e-05 23.6 0.0 0.00012 21.6 0.0 2.1 2 1 0 2 2 2 1 DEAD/DEAH box helicase RapA_C PF12137.3 gi|397779807|ref|YP_006544280.1| - 0.011 14.6 0.8 0.038 12.8 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase recycling family C-terminal AAA_4 PF04326.9 gi|397779808|ref|YP_006544281.1| - 9.3e-17 61.3 0.0 1.7e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 Divergent AAA domain Methyltransf_26 PF13659.1 gi|397779808|ref|YP_006544281.1| - 3.9e-16 59.1 0.4 3.6e-15 56.0 0.1 2.6 2 1 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.11 gi|397779808|ref|YP_006544281.1| - 7.3e-07 28.5 0.0 2.1e-05 23.7 0.0 2.8 3 0 0 3 3 3 1 N-6 DNA Methylase Eco57I PF07669.6 gi|397779808|ref|YP_006544281.1| - 5.3e-05 23.5 0.0 0.002 18.4 0.0 2.8 2 1 0 2 2 2 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|397779808|ref|YP_006544281.1| - 0.0043 16.6 0.0 0.017 14.6 0.0 1.9 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|397779808|ref|YP_006544281.1| - 0.046 13.3 0.0 0.099 12.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Gag_spuma PF03276.9 gi|397779808|ref|YP_006544281.1| - 0.21 9.8 0.0 0.31 9.3 0.0 1.1 1 0 0 1 1 1 0 Spumavirus gag protein DUF328 PF03883.9 gi|397779809|ref|YP_006544282.1| - 8.5e-06 25.2 0.0 1.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF328) DUF1364 PF07102.7 gi|397779812|ref|YP_006544285.1| - 0.042 13.7 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1364) TPR_11 PF13414.1 gi|397779814|ref|YP_006544287.1| - 8.3e-13 47.7 14.4 1.5e-07 30.9 0.0 5.0 4 1 0 4 4 4 3 TPR repeat TPR_12 PF13424.1 gi|397779814|ref|YP_006544287.1| - 7e-12 45.1 7.1 0.023 14.5 0.0 5.7 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|397779814|ref|YP_006544287.1| - 2.8e-08 33.0 9.9 0.00018 21.0 0.1 5.3 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|397779814|ref|YP_006544287.1| - 2.8e-06 26.8 10.8 0.11 12.5 0.1 6.7 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|397779814|ref|YP_006544287.1| - 5.6e-06 26.8 10.1 4.2 8.1 2.0 6.2 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|397779814|ref|YP_006544287.1| - 0.00018 21.8 5.2 0.0017 18.6 0.1 4.1 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|397779814|ref|YP_006544287.1| - 0.0031 17.9 11.8 12 6.8 0.1 7.1 4 2 4 8 8 8 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|397779814|ref|YP_006544287.1| - 0.0049 16.5 11.8 2.6 8.0 0.1 5.5 5 0 0 5 5 5 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|397779814|ref|YP_006544287.1| - 0.033 14.0 4.4 0.077 12.8 0.2 3.1 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.1 gi|397779814|ref|YP_006544287.1| - 2.2 8.2 14.2 0.62 10.0 0.0 5.1 6 0 0 6 6 6 0 Tetratricopeptide repeat Radical_SAM PF04055.16 gi|397779815|ref|YP_006544288.1| - 3e-16 60.0 0.0 5.7e-16 59.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|397779815|ref|YP_006544288.1| - 4.7e-09 36.3 0.0 1.6e-08 34.6 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|397779815|ref|YP_006544288.1| - 8.9e-07 29.1 0.0 2.5e-06 27.6 0.0 1.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain DUF1887 PF09002.6 gi|397779816|ref|YP_006544289.1| - 0.0025 16.3 0.0 0.003 16.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) PadR PF03551.9 gi|397779816|ref|YP_006544289.1| - 0.074 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DEAD PF00270.24 gi|397779817|ref|YP_006544290.1| - 3e-21 75.6 0.0 1.7e-20 73.2 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|397779817|ref|YP_006544290.1| - 3.6e-16 59.4 0.0 1.2e-15 57.7 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|397779817|ref|YP_006544290.1| - 3.7e-11 42.7 0.0 1.9e-10 40.4 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|397779817|ref|YP_006544290.1| - 0.0013 18.5 0.0 0.0029 17.4 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF35_N PF12172.3 gi|397779817|ref|YP_006544290.1| - 0.053 13.4 0.2 0.053 13.4 0.2 5.0 5 0 0 5 5 5 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-Di19 PF05605.7 gi|397779817|ref|YP_006544290.1| - 0.48 10.5 4.9 2.7 8.2 0.0 3.3 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding HEAT_2 PF13646.1 gi|397779818|ref|YP_006544291.1| - 5.7e-44 148.3 12.2 4.2e-08 33.3 0.2 6.5 3 2 3 6 6 6 6 HEAT repeats HEAT_PBS PF03130.11 gi|397779818|ref|YP_006544291.1| - 3.8e-15 54.7 26.9 0.00096 19.4 1.5 9.1 9 0 0 9 9 9 4 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|397779818|ref|YP_006544291.1| - 3.1e-08 33.0 2.9 4.4 7.6 0.0 8.4 8 0 0 8 8 8 2 HEAT repeat HEAT_EZ PF13513.1 gi|397779818|ref|YP_006544291.1| - 3.3e-05 24.2 16.4 0.01 16.2 0.1 8.0 6 4 3 9 9 9 1 HEAT-like repeat Aconitase_B_N PF11791.3 gi|397779818|ref|YP_006544291.1| - 0.0091 15.8 0.3 0.15 11.9 0.0 3.2 4 0 0 4 4 4 1 Aconitate B N-terminal domain Arm PF00514.18 gi|397779818|ref|YP_006544291.1| - 0.017 14.9 0.8 93 3.0 0.0 5.5 6 1 1 7 7 7 0 Armadillo/beta-catenin-like repeat DUF1981 PF09324.5 gi|397779818|ref|YP_006544291.1| - 0.079 12.4 0.0 1.4 8.5 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1981) Mrr_cat PF04471.7 gi|397779819|ref|YP_006544292.1| - 2.8e-25 88.3 0.0 5.8e-25 87.3 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease DUF4365 PF14280.1 gi|397779819|ref|YP_006544292.1| - 0.032 13.9 0.0 0.064 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4365) DUF262 PF03235.9 gi|397779821|ref|YP_006544294.1| - 2.4e-28 99.6 2.6 2.4e-28 99.6 1.8 2.4 2 1 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|397779821|ref|YP_006544294.1| - 3.6e-07 30.1 3.3 1.4e-06 28.2 0.2 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1524) NTP_transf_2 PF01909.18 gi|397779822|ref|YP_006544295.1| - 6.4e-12 45.6 0.0 7.6e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain MdcG PF10620.4 gi|397779822|ref|YP_006544295.1| - 0.041 13.4 0.0 0.064 12.7 0.0 1.5 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Transglut_core PF01841.14 gi|397779824|ref|YP_006544297.1| - 1.8e-21 76.4 0.0 7.7e-21 74.4 0.0 2.1 2 0 0 2 2 2 1 Transglutaminase-like superfamily TPR_2 PF07719.12 gi|397779824|ref|YP_006544297.1| - 1.1 9.3 4.5 3.6 7.7 3.1 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat NTP_transf_2 PF01909.18 gi|397779825|ref|YP_006544298.1| - 2.6e-08 34.0 0.0 2.8e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain RQC PF09382.5 gi|397779827|ref|YP_006544300.1| - 4.2e-25 87.5 0.0 8.1e-25 86.5 0.0 1.5 1 0 0 1 1 1 1 RQC domain HRDC PF00570.18 gi|397779827|ref|YP_006544300.1| - 9e-24 82.9 0.7 2.4e-23 81.6 0.0 2.1 2 0 0 2 2 2 1 HRDC domain Helicase_C PF00271.26 gi|397779827|ref|YP_006544300.1| - 7.2e-23 80.2 0.0 8.9e-22 76.7 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|397779827|ref|YP_006544300.1| - 2.4e-17 62.9 0.0 5.2e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HEM4 PF02602.10 gi|397779827|ref|YP_006544300.1| - 0.0059 15.8 0.1 0.096 11.9 0.0 2.9 3 0 0 3 3 3 1 Uroporphyrinogen-III synthase HemD Helicase_Sgs1 PF11408.3 gi|397779827|ref|YP_006544300.1| - 0.015 15.1 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 Sgs1 RecQ helicase HHH PF00633.18 gi|397779827|ref|YP_006544300.1| - 0.047 13.4 0.0 0.15 11.8 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif ResIII PF04851.10 gi|397779827|ref|YP_006544300.1| - 0.092 12.5 0.0 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|397779828|ref|YP_006544301.1| - 4.4e-27 94.6 0.0 8e-27 93.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|397779828|ref|YP_006544301.1| - 2.3e-13 49.7 0.0 5.9e-13 48.4 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|397779828|ref|YP_006544301.1| - 3.9e-06 26.8 0.0 6.8e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF2791 PF10923.3 gi|397779829|ref|YP_006544302.1| - 2.7e-148 494.0 0.0 3.4e-148 493.7 0.0 1.0 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_16 PF13191.1 gi|397779829|ref|YP_006544302.1| - 0.0057 16.6 0.0 0.014 15.4 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|397779829|ref|YP_006544302.1| - 0.015 15.3 0.0 7.9 6.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|397779829|ref|YP_006544302.1| - 0.033 13.6 0.1 0.31 10.4 0.1 2.0 1 1 1 2 2 2 0 AAA-like domain DAP3 PF10236.4 gi|397779829|ref|YP_006544302.1| - 0.035 13.0 0.0 0.055 12.3 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_33 PF13671.1 gi|397779829|ref|YP_006544302.1| - 0.047 13.5 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain TerB-N PF13208.1 gi|590000620|ref|YP_006544303.2| - 2.3e-25 89.3 0.2 6.1e-25 87.9 0.1 1.8 2 0 0 2 2 2 1 TerB-N TerB-C PF15615.1 gi|590000620|ref|YP_006544303.2| - 3.9e-21 75.8 0.0 7.2e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 TerB-C domain TerB PF05099.8 gi|590000620|ref|YP_006544303.2| - 2.5e-14 53.2 0.0 8e-14 51.5 0.0 1.7 2 0 0 2 2 2 1 Tellurite resistance protein TerB DUF533 PF04391.7 gi|590000620|ref|YP_006544303.2| - 0.00099 18.5 0.0 0.34 10.2 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF533) DUF948 PF06103.6 gi|590000620|ref|YP_006544303.2| - 0.045 13.6 0.0 0.16 11.8 0.0 1.9 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Cas_APE2256 PF09651.5 gi|397779831|ref|YP_006544304.1| - 0.0051 16.5 0.1 0.011 15.4 0.0 1.6 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_APE2256) HEPN PF05168.9 gi|397779834|ref|YP_006544307.1| - 1.3e-07 31.4 0.0 1.6e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 HEPN domain DUF4398 PF14346.1 gi|397779834|ref|YP_006544307.1| - 0.0012 18.8 0.0 0.0014 18.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) DUF3467 PF11950.3 gi|397779836|ref|YP_006544309.1| - 1e-09 38.2 0.0 1.2e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) TrmB PF01978.14 gi|397779837|ref|YP_006544310.1| - 0.026 14.2 0.1 0.045 13.4 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|397779837|ref|YP_006544310.1| - 0.058 13.7 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.16 gi|397779837|ref|YP_006544310.1| - 0.071 12.5 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|397779837|ref|YP_006544310.1| - 0.094 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF4423 PF14394.1 gi|397779837|ref|YP_006544310.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) SBP_bac_3 PF00497.15 gi|397779838|ref|YP_006544311.1| - 2.3e-41 141.5 0.1 6.3e-20 71.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 Cache_2 PF08269.6 gi|397779838|ref|YP_006544311.1| - 0.0002 21.2 0.1 0.00052 19.9 0.1 1.6 1 0 0 1 1 1 1 Cache domain DUF4398 PF14346.1 gi|397779840|ref|YP_006544313.1| - 0.21 11.6 13.4 0.81 9.7 3.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) Tubulin PF00091.20 gi|397779841|ref|YP_006544314.1| - 6.6e-28 98.0 0.1 1.3e-27 97.0 0.1 1.4 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|397779841|ref|YP_006544314.1| - 0.037 12.9 0.0 0.064 12.1 0.0 1.3 1 0 0 1 1 1 0 Tubulin like Amino_oxidase PF01593.19 gi|397779842|ref|YP_006544315.1| - 1.1e-15 57.6 0.3 6.1e-11 42.0 0.0 2.4 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|397779842|ref|YP_006544315.1| - 3.3e-11 43.0 0.4 7.6e-11 41.8 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|397779842|ref|YP_006544315.1| - 1.6e-08 33.8 0.5 0.0035 16.3 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|397779842|ref|YP_006544315.1| - 0.002 18.5 0.1 0.1 12.9 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|397779842|ref|YP_006544315.1| - 0.0042 16.8 0.4 2 8.2 0.1 3.1 3 0 0 3 3 3 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|397779842|ref|YP_006544315.1| - 0.021 14.8 0.0 6.2 6.8 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF3017 PF11222.3 gi|397779842|ref|YP_006544315.1| - 0.063 13.0 0.1 0.14 11.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3017) FAD_binding_2 PF00890.19 gi|397779842|ref|YP_006544315.1| - 0.13 11.1 0.3 0.81 8.4 0.2 1.9 2 0 0 2 2 2 0 FAD binding domain HI0933_like PF03486.9 gi|397779842|ref|YP_006544315.1| - 0.21 10.0 0.1 0.96 7.8 0.1 1.8 2 0 0 2 2 2 0 HI0933-like protein Glycos_transf_2 PF00535.21 gi|397779843|ref|YP_006544316.1| - 7.9e-25 87.4 0.0 1.2e-24 86.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|397779843|ref|YP_006544316.1| - 6.3e-09 35.9 0.1 1.4e-08 34.8 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|397779843|ref|YP_006544316.1| - 0.0044 16.1 0.0 0.0081 15.2 0.0 1.5 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|397779843|ref|YP_006544316.1| - 0.0058 16.9 0.0 0.013 15.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF3406 PF11886.3 gi|397779843|ref|YP_006544316.1| - 0.1 11.4 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3406) UPF0104 PF03706.8 gi|397779844|ref|YP_006544317.1| - 4e-42 144.5 31.7 5.2e-42 144.1 22.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) MENTAL PF10457.4 gi|397779844|ref|YP_006544317.1| - 1.9 8.0 6.0 0.15 11.6 0.4 1.9 2 0 0 2 2 2 0 Cholesterol-capturing domain DUF2298 PF10060.4 gi|397779845|ref|YP_006544318.1| - 5.9e-88 295.7 37.6 8.1e-88 295.3 25.0 1.8 2 0 0 2 2 2 1 Uncharacterized membrane protein (DUF2298) Ribosomal_L7Ae PF01248.21 gi|397779846|ref|YP_006544319.1| - 9e-25 86.0 0.2 1.1e-24 85.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|397779846|ref|YP_006544319.1| - 0.0061 16.3 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain CobW_C PF07683.9 gi|397779846|ref|YP_006544319.1| - 0.13 11.9 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Cobalamin synthesis protein cobW C-terminal domain YtxH PF12732.2 gi|397779846|ref|YP_006544319.1| - 0.91 9.9 5.3 1.3 9.4 0.6 2.1 2 0 0 2 2 2 0 YtxH-like protein Ribosomal_S28e PF01200.13 gi|397779847|ref|YP_006544320.1| - 7.8e-30 102.4 0.2 8.4e-30 102.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|397779847|ref|YP_006544320.1| - 0.051 13.3 0.0 0.65 9.8 0.0 2.2 2 0 0 2 2 2 0 KOW motif Ribosomal_L24e PF01246.15 gi|397779848|ref|YP_006544321.1| - 2.4e-25 88.1 0.7 2.7e-25 87.9 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|397779848|ref|YP_006544321.1| - 1.2e-07 31.2 1.5 1.5e-07 30.9 1.1 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|397779848|ref|YP_006544321.1| - 1.8e-05 24.5 0.9 2.1e-05 24.2 0.6 1.1 1 0 0 1 1 1 1 YHS domain Zn_ribbon_recom PF13408.1 gi|397779848|ref|YP_006544321.1| - 0.008 16.4 1.4 0.01 16.0 1.0 1.3 1 1 0 1 1 1 1 Recombinase zinc beta ribbon domain DUF2116 PF09889.4 gi|397779848|ref|YP_006544321.1| - 0.022 14.5 0.7 0.23 11.2 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) LIM PF00412.17 gi|397779848|ref|YP_006544321.1| - 0.03 14.3 0.5 0.053 13.5 0.3 1.5 1 1 0 1 1 1 0 LIM domain Arc_trans_TRASH PF08394.5 gi|397779848|ref|YP_006544321.1| - 0.045 13.9 1.3 0.11 12.6 0.9 1.7 1 1 0 1 1 1 0 Archaeal TRASH domain DUF581 PF04570.9 gi|397779848|ref|YP_006544321.1| - 0.47 9.7 2.4 0.86 8.9 1.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF581) NDK PF00334.14 gi|397779849|ref|YP_006544322.1| - 2.8e-51 172.8 0.0 3.2e-51 172.6 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase MarC PF01914.12 gi|397779850|ref|YP_006544323.1| - 5e-57 192.3 17.9 5.6e-57 192.1 12.4 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein LysE PF01810.13 gi|397779850|ref|YP_006544323.1| - 0.014 14.6 10.4 0.024 13.9 7.2 1.5 1 1 0 1 1 1 0 LysE type translocator PsbX PF06596.6 gi|397779850|ref|YP_006544323.1| - 0.036 13.7 0.7 0.036 13.7 0.5 3.1 3 0 0 3 3 3 0 Photosystem II reaction centre X protein (PsbX) DUF2269 PF10027.4 gi|397779850|ref|YP_006544323.1| - 0.32 10.7 8.4 0.033 13.9 0.9 2.3 1 1 0 2 2 2 0 Predicted integral membrane protein (DUF2269) DUF1345 PF07077.6 gi|397779850|ref|YP_006544323.1| - 5.9 6.3 7.6 2.4 7.6 0.3 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1345) VIT1 PF01988.14 gi|397779851|ref|YP_006544324.1| - 1.3 8.4 4.7 1.4 8.3 3.3 1.0 1 0 0 1 1 1 0 VIT family Claudin_2 PF13903.1 gi|397779851|ref|YP_006544324.1| - 2.2 7.9 6.0 2.7 7.6 4.1 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction IncA PF04156.9 gi|397779851|ref|YP_006544324.1| - 8.9 5.8 9.6 11 5.5 6.7 1.1 1 0 0 1 1 1 0 IncA protein CN_hydrolase PF00795.17 gi|397779852|ref|YP_006544325.1| - 2.4e-25 88.9 0.0 3.7e-25 88.3 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase TPR_4 PF07721.9 gi|397779852|ref|YP_006544325.1| - 0.0012 19.0 2.3 0.0034 17.6 0.1 2.7 2 0 0 2 2 2 1 Tetratricopeptide repeat DUF457 PF04307.9 gi|590000621|ref|YP_009001396.1| - 2.3e-22 79.0 12.5 3.5e-22 78.4 8.7 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) PALP PF00291.20 gi|590000622|ref|YP_006544326.2| - 9.5e-69 231.9 3.1 1.1e-68 231.7 2.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PK_C PF02887.11 gi|590000622|ref|YP_006544326.2| - 0.039 13.5 1.8 2.2 7.8 0.1 2.5 2 1 0 2 2 2 0 Pyruvate kinase, alpha/beta domain DUF2296 PF10058.4 gi|590000622|ref|YP_006544326.2| - 0.52 10.1 2.7 1.2 8.9 1.9 1.7 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) LysE PF01810.13 gi|397779855|ref|YP_006544328.1| - 3.6e-15 55.7 13.3 4.6e-15 55.3 9.2 1.1 1 0 0 1 1 1 1 LysE type translocator PD40 PF07676.7 gi|397779856|ref|YP_006544329.1| - 1.1e-28 98.3 11.2 3e-09 36.3 0.0 7.5 7 0 0 7 7 7 6 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|397779856|ref|YP_006544329.1| - 2.2e-10 39.6 0.0 0.27 9.7 0.0 5.9 3 3 2 5 5 5 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.1 gi|397779856|ref|YP_006544329.1| - 5.8e-05 21.7 0.3 0.52 8.7 0.0 3.6 2 2 0 3 3 3 3 Oligogalacturonate lyase Gmad1 PF10647.4 gi|397779856|ref|YP_006544329.1| - 7.9e-05 22.1 8.0 0.021 14.2 0.1 4.1 2 2 2 5 5 5 2 Lipoprotein LpqB beta-propeller domain eIF2A PF08662.6 gi|397779856|ref|YP_006544329.1| - 0.0049 16.6 0.0 2.1 8.0 0.0 2.9 3 0 0 3 3 3 2 Eukaryotic translation initiation factor eIF2A TPP_enzyme_C PF02775.16 gi|397779857|ref|YP_006544330.1| - 6.2e-27 94.0 0.0 1.1e-26 93.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|397779858|ref|YP_006544331.1| - 1.5e-68 230.7 0.1 2e-68 230.3 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|397779858|ref|YP_006544331.1| - 3e-05 23.9 0.0 6.4e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|397779858|ref|YP_006544331.1| - 0.038 13.4 0.1 0.058 12.8 0.1 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.22 gi|397779859|ref|YP_006544332.1| - 1.8e-13 49.4 16.6 9.1e-07 28.2 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397779859|ref|YP_006544332.1| - 1e-11 44.4 25.7 1.1e-08 34.7 10.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397779859|ref|YP_006544332.1| - 3.5e-11 43.3 10.3 2.8e-05 24.3 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397779859|ref|YP_006544332.1| - 1.1e-10 40.8 16.4 6e-06 25.8 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|397779859|ref|YP_006544332.1| - 7.1e-09 35.0 17.7 3e-05 23.6 2.2 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|397779859|ref|YP_006544332.1| - 2.3e-08 34.6 14.3 0.0003 21.4 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|397779859|ref|YP_006544332.1| - 6.7e-08 32.2 26.5 4.6e-07 29.5 9.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397779859|ref|YP_006544332.1| - 1.1e-06 28.7 27.6 4.1e-05 23.7 11.0 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|397779859|ref|YP_006544332.1| - 2.6e-05 24.1 14.1 0.00078 19.4 10.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397779859|ref|YP_006544332.1| - 8e-05 22.6 15.0 0.017 15.4 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|397779859|ref|YP_006544332.1| - 0.00033 20.9 9.7 0.062 13.6 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|397779859|ref|YP_006544332.1| - 0.00099 18.9 6.3 0.0012 18.6 4.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397779859|ref|YP_006544332.1| - 0.0012 19.1 15.4 0.24 11.7 3.0 2.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397779859|ref|YP_006544332.1| - 0.0013 19.2 13.3 0.038 14.5 1.4 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|397779859|ref|YP_006544332.1| - 0.0023 18.3 15.5 0.026 14.9 2.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|397779859|ref|YP_006544332.1| - 0.0026 18.1 25.4 0.0059 17.0 3.0 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain POR PF01558.13 gi|397779860|ref|YP_006544333.1| - 2.9e-39 134.7 0.7 3.4e-39 134.5 0.5 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase SIS PF01380.17 gi|397779861|ref|YP_006544334.1| - 1.6e-17 63.3 0.0 2.8e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|397779861|ref|YP_006544334.1| - 2.4e-09 37.0 0.7 4.5e-05 23.1 0.0 2.5 2 1 1 3 3 3 2 SIS domain FmdE PF02663.9 gi|397779863|ref|YP_006544336.1| - 0.046 13.6 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon TF_Zn_Ribbon PF08271.7 gi|397779863|ref|YP_006544336.1| - 0.076 12.3 0.0 0.21 10.9 0.0 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding DUF368 PF04018.8 gi|397779866|ref|YP_006544339.1| - 5.5e-65 219.0 22.1 5.8e-65 219.0 14.9 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF368) Fasciclin PF02469.17 gi|397779867|ref|YP_006544340.1| - 2.2e-22 79.4 0.2 6.7e-22 77.8 0.1 1.9 1 0 0 1 1 1 1 Fasciclin domain DUF4399 PF14347.1 gi|397779867|ref|YP_006544340.1| - 1e-16 60.6 4.7 2.3e-07 30.7 0.2 3.0 3 0 0 3 3 3 2 Domain of unknown function (DUF4399) DUF4430 PF14478.1 gi|397779867|ref|YP_006544340.1| - 1.2e-05 25.2 0.1 3e-05 23.9 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4430) SHOCT PF09851.4 gi|397779868|ref|YP_006544341.1| - 3.6e-09 35.7 5.0 5.9e-09 35.0 3.4 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF2254 PF10011.4 gi|397779868|ref|YP_006544341.1| - 0.023 13.1 1.8 0.029 12.8 1.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) INTS5_N PF14837.1 gi|397779868|ref|YP_006544341.1| - 0.66 9.3 3.7 0.76 9.1 2.3 1.2 1 1 0 1 1 1 0 Integrator complex subunit 5 N-terminus DUF966 PF06136.8 gi|397779868|ref|YP_006544341.1| - 0.91 8.8 4.7 1 8.7 3.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF966) GvpG PF05120.7 gi|397779868|ref|YP_006544341.1| - 2.6 7.9 9.6 6.6 6.6 6.6 1.8 1 1 0 1 1 1 0 Gas vesicle protein G DMAP_binding PF06464.6 gi|397779868|ref|YP_006544341.1| - 5.7 7.5 9.4 0.64 10.6 1.0 2.1 1 1 1 2 2 2 0 DMAP1-binding Domain Sugar_tr PF00083.19 gi|397779870|ref|YP_006544343.1| - 3.9e-122 408.0 40.3 4.4e-122 407.9 28.0 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|397779870|ref|YP_006544343.1| - 4.9e-30 104.4 98.7 9.2e-29 100.2 38.7 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.8 gi|397779870|ref|YP_006544343.1| - 1.1e-06 27.2 9.2 1.1e-06 27.2 6.4 2.2 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_2 PF13347.1 gi|397779870|ref|YP_006544343.1| - 0.0022 16.4 7.7 0.0022 16.4 5.3 4.0 2 2 2 4 4 4 2 MFS/sugar transport protein Gly-zipper_OmpA PF13436.1 gi|397779870|ref|YP_006544343.1| - 1 9.0 3.5 8.5 6.0 0.0 2.5 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain PsiE PF06146.7 gi|397779871|ref|YP_006544344.1| - 2.3e-13 50.1 7.8 2.3e-13 50.1 5.4 1.8 2 0 0 2 2 2 1 Phosphate-starvation-inducible E DUF3733 PF12534.3 gi|397779871|ref|YP_006544344.1| - 0.25 10.6 3.7 1.2 8.4 2.7 2.0 2 0 0 2 2 2 0 Leucine-rich repeat containing protein 8 DUF996 PF06195.8 gi|397779871|ref|YP_006544344.1| - 1 9.3 11.0 1.5 8.8 7.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF996) DsbB PF02600.11 gi|397779871|ref|YP_006544344.1| - 1.2 8.8 5.9 11 5.7 1.0 2.3 2 0 0 2 2 2 0 Disulfide bond formation protein DsbB DUF1282 PF06930.7 gi|397779871|ref|YP_006544344.1| - 1.7 8.2 7.5 5.4 6.6 5.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) DUF4149 PF13664.1 gi|397779871|ref|YP_006544344.1| - 5.9 7.0 9.7 1.9 8.5 0.4 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4149) MFS_1 PF07690.11 gi|397779872|ref|YP_006544345.1| - 5.7e-40 137.1 63.6 4.1e-39 134.2 36.5 3.4 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3172 PF11371.3 gi|397779872|ref|YP_006544345.1| - 0.11 11.9 0.1 0.36 10.3 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3172) Glyco_hydro_63 PF03200.11 gi|397779873|ref|YP_006544346.1| - 1.3e-09 36.5 4.8 1.4e-07 29.8 0.5 3.9 3 1 0 3 3 3 2 Mannosyl oligosaccharide glucosidase CEP44 PF15007.1 gi|397779873|ref|YP_006544346.1| - 0.023 14.3 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Centrosomal spindle body, CEP44 DUF883 PF05957.8 gi|397779874|ref|YP_006544347.1| - 0.00064 20.0 0.4 0.0012 19.2 0.1 1.5 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF883) TPR_21 PF09976.4 gi|397779874|ref|YP_006544347.1| - 0.0082 16.0 0.2 0.011 15.7 0.2 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat NPV_P10 PF05531.7 gi|397779874|ref|YP_006544347.1| - 0.023 14.9 0.6 0.07 13.3 0.3 1.9 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF4239 PF14023.1 gi|397779874|ref|YP_006544347.1| - 0.045 13.1 0.1 0.12 11.7 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4239) IncA PF04156.9 gi|397779874|ref|YP_006544347.1| - 0.05 13.1 2.4 0.19 11.3 1.7 2.0 1 1 0 1 1 1 0 IncA protein Apolipoprotein PF01442.13 gi|397779874|ref|YP_006544347.1| - 0.055 12.9 1.1 0.4 10.1 0.1 2.0 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF1311 PF07007.7 gi|397779874|ref|YP_006544347.1| - 0.14 12.3 2.1 6.2 6.9 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1311) DUF1978 PF09321.5 gi|397779874|ref|YP_006544347.1| - 0.14 11.5 0.1 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) WXG100 PF06013.7 gi|397779874|ref|YP_006544347.1| - 0.14 12.1 0.6 1.1 9.3 0.1 2.4 1 1 0 2 2 2 0 Proteins of 100 residues with WXG TPR_9 PF13371.1 gi|397779874|ref|YP_006544347.1| - 0.15 11.9 3.2 0.46 10.3 0.2 2.3 1 1 1 2 2 2 0 Tetratricopeptide repeat Tub_2 PF04525.7 gi|397779875|ref|YP_006544348.1| - 3.5e-22 78.7 0.0 4.7e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 Tubby C 2 FxsA PF04186.8 gi|397779877|ref|YP_006544350.1| - 0.066 12.8 0.6 0.072 12.7 0.4 1.1 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein Glyco_hydro_63 PF03200.11 gi|397779879|ref|YP_006544352.1| - 0.00026 19.0 10.1 0.00029 18.8 0.7 3.8 4 1 0 4 4 4 2 Mannosyl oligosaccharide glucosidase PIN PF01850.16 gi|397779880|ref|YP_006544353.1| - 1.1e-13 51.6 0.1 1.2e-13 51.4 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF217 PF02697.9 gi|397779881|ref|YP_006544354.1| - 6.8e-16 58.2 0.1 8.2e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 RHH_1 PF01402.16 gi|397779881|ref|YP_006544354.1| - 0.025 14.4 0.5 0.046 13.6 0.0 1.6 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Aminotran_4 PF01063.14 gi|397779882|ref|YP_006544355.1| - 4.2e-56 190.0 0.0 4.9e-56 189.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV GATase_3 PF07685.9 gi|397779883|ref|YP_006544356.1| - 7.9e-29 100.2 0.0 1.3e-28 99.5 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|397779883|ref|YP_006544356.1| - 1.9e-20 73.1 0.0 2.9e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|397779883|ref|YP_006544356.1| - 3.2e-16 59.5 0.4 3.3e-12 46.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain Oxidored_nitro PF00148.14 gi|397779884|ref|YP_006544357.1| - 7.1e-16 57.8 0.3 1.5e-15 56.7 0.1 1.6 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase HEM4 PF02602.10 gi|397779885|ref|YP_006544358.1| - 0.017 14.3 0.0 0.048 12.9 0.0 1.8 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Mur_ligase_M PF08245.7 gi|397779885|ref|YP_006544358.1| - 0.021 14.8 0.1 0.037 14.0 0.1 1.4 1 0 0 1 1 1 0 Mur ligase middle domain CbiX PF01903.12 gi|397779886|ref|YP_006544359.1| - 3.9e-25 88.0 0.0 4.5e-25 87.7 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|397779886|ref|YP_006544359.1| - 3e-05 23.2 0.0 3.3e-05 23.1 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|397779886|ref|YP_006544359.1| - 0.077 11.9 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Ferrochelatase Dus PF01207.12 gi|397779888|ref|YP_006544361.1| - 2.5e-08 33.1 0.0 2.1e-07 30.0 0.0 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) DUF4149 PF13664.1 gi|397779888|ref|YP_006544361.1| - 0.0097 15.9 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4149) IMPDH PF00478.20 gi|397779888|ref|YP_006544361.1| - 0.021 13.7 0.1 0.028 13.3 0.0 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Radical_SAM PF04055.16 gi|397779888|ref|YP_006544361.1| - 0.037 14.2 0.0 0.12 12.5 0.0 1.8 1 1 0 1 1 1 0 Radical SAM superfamily Ribul_P_3_epim PF00834.14 gi|397779888|ref|YP_006544361.1| - 0.11 11.5 0.0 0.21 10.6 0.0 1.5 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family CitG PF01874.11 gi|397779889|ref|YP_006544362.1| - 6.7e-74 248.5 0.4 8e-74 248.2 0.3 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|397779890|ref|YP_006544363.1| - 2.9e-47 160.5 0.0 3.3e-47 160.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Fasciclin PF02469.17 gi|397779891|ref|YP_006544364.1| - 1.8e-19 70.0 0.0 2.2e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain Fasciclin PF02469.17 gi|590000624|ref|YP_009001397.1| - 1.1e-28 99.8 0.0 1.2e-28 99.6 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain Fasciclin PF02469.17 gi|590000625|ref|YP_006544366.2| - 1.6e-26 92.8 0.0 1.8e-26 92.6 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain Fasciclin PF02469.17 gi|397779894|ref|YP_006544367.1| - 1.8e-26 92.6 0.0 2.2e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain DNA_ligase_ZBD PF03119.11 gi|397779894|ref|YP_006544367.1| - 0.0049 16.5 0.1 0.0074 15.9 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain UvdE PF03851.9 gi|397779895|ref|YP_006544368.1| - 5.4e-59 199.4 0.0 6.6e-59 199.1 0.0 1.0 1 0 0 1 1 1 1 UV-endonuclease UvdE AP_endonuc_2 PF01261.19 gi|397779895|ref|YP_006544368.1| - 3.3e-08 33.0 0.2 9.3e-08 31.6 0.1 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel HhH-GPD PF00730.20 gi|397779896|ref|YP_006544369.1| - 3.6e-12 46.5 0.0 6.6e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|397779896|ref|YP_006544369.1| - 2.8e-05 23.5 0.0 6.6e-05 22.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif TrmB PF01978.14 gi|397779896|ref|YP_006544369.1| - 0.00016 21.3 0.1 0.00039 20.0 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|397779896|ref|YP_006544369.1| - 0.001 18.4 0.2 0.018 14.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|397779896|ref|YP_006544369.1| - 0.0082 15.6 0.1 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit Rrf2 PF02082.15 gi|397779896|ref|YP_006544369.1| - 0.011 15.8 0.0 0.026 14.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PrgU PF09627.5 gi|397779896|ref|YP_006544369.1| - 0.015 14.8 0.1 0.045 13.3 0.0 1.7 1 0 0 1 1 1 0 PrgU-like protein HHH_5 PF14520.1 gi|397779896|ref|YP_006544369.1| - 0.021 14.9 0.0 0.56 10.4 0.0 2.5 1 1 0 1 1 1 0 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|397779896|ref|YP_006544369.1| - 0.03 14.2 0.0 0.093 12.6 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif EAP30 PF04157.11 gi|397779896|ref|YP_006544369.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family Transposase_20 PF02371.11 gi|397779896|ref|YP_006544369.1| - 0.13 12.4 0.0 0.36 10.9 0.0 1.8 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family AP_endonuc_2 PF01261.19 gi|397779897|ref|YP_006544370.1| - 4.1e-06 26.2 0.2 6.8e-06 25.5 0.2 1.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel NHL PF01436.16 gi|397779898|ref|YP_006544371.1| - 1.6e-23 81.4 0.0 1.5e-05 24.6 0.0 7.1 7 0 0 7 7 7 5 NHL repeat AhpC-TSA PF00578.16 gi|397779898|ref|YP_006544371.1| - 3.2e-08 33.2 0.0 5.7e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.1 gi|397779898|ref|YP_006544371.1| - 1.6e-07 31.3 0.0 4.4e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.5 gi|397779898|ref|YP_006544371.1| - 1.5e-05 24.5 0.0 2.8e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|397779898|ref|YP_006544371.1| - 3.2e-05 24.0 0.0 8.6e-05 22.7 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin-like domain SGL PF08450.7 gi|397779898|ref|YP_006544371.1| - 0.0042 16.4 0.1 1.2 8.4 0.0 4.1 3 1 0 3 3 3 1 SMP-30/Gluconolaconase/LRE-like region Arylesterase PF01731.15 gi|397779898|ref|YP_006544371.1| - 0.049 13.6 0.1 26 4.8 0.0 4.1 5 0 0 5 5 5 0 Arylesterase TraF PF13728.1 gi|397779898|ref|YP_006544371.1| - 0.061 12.8 0.0 0.44 9.9 0.0 2.2 2 1 0 2 2 2 0 F plasmid transfer operon protein Thioredoxin PF00085.15 gi|397779898|ref|YP_006544371.1| - 0.082 12.5 0.0 3.1 7.5 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin LVIVD PF08309.6 gi|397779898|ref|YP_006544371.1| - 2.6 7.0 5.7 1.9 7.5 0.0 3.4 5 0 0 5 5 5 0 LVIVD repeat Fasciclin PF02469.17 gi|397779899|ref|YP_006544372.1| - 9.3e-33 112.9 0.0 1.3e-32 112.4 0.0 1.2 1 0 0 1 1 1 1 Fasciclin domain DUF3359 PF11839.3 gi|397779899|ref|YP_006544372.1| - 0.035 14.4 0.1 0.08 13.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) NTP_transf_2 PF01909.18 gi|590000626|ref|YP_009001398.1| - 3e-12 46.7 0.1 5e-12 45.9 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|590000626|ref|YP_009001398.1| - 0.0081 16.2 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase beta palm HTH_20 PF12840.2 gi|590000626|ref|YP_009001398.1| - 0.029 14.1 0.2 0.053 13.3 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain SWIRM PF04433.12 gi|590000626|ref|YP_009001398.1| - 0.1 12.7 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 SWIRM domain HTH_12 PF08461.5 gi|590000626|ref|YP_009001398.1| - 2.4 7.9 6.3 0.28 10.9 0.9 2.0 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain HEPN PF05168.9 gi|397779900|ref|YP_006544373.1| - 1.9e-08 34.1 0.1 2.3e-08 33.9 0.1 1.1 1 0 0 1 1 1 1 HEPN domain MarR PF01047.17 gi|397779900|ref|YP_006544373.1| - 0.061 13.0 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 MarR family AAA_11 PF13086.1 gi|397779901|ref|YP_006544374.1| - 3.9e-20 72.4 0.1 9.1e-09 35.2 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_12 PF13087.1 gi|397779901|ref|YP_006544374.1| - 4.5e-18 65.3 0.0 7.8e-18 64.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|397779901|ref|YP_006544374.1| - 2.5e-14 53.3 0.0 7.7e-14 51.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|397779901|ref|YP_006544374.1| - 3.6e-09 36.2 0.4 1.9e-08 33.8 0.3 2.3 1 0 0 1 1 1 1 Part of AAA domain DEAD PF00270.24 gi|397779901|ref|YP_006544374.1| - 4.5e-06 26.2 0.0 7.4e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase PhoH PF02562.11 gi|397779901|ref|YP_006544374.1| - 3e-05 23.3 0.0 0.031 13.5 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein UvrD-helicase PF00580.16 gi|397779901|ref|YP_006544374.1| - 0.00054 19.3 0.0 0.0011 18.3 0.0 1.5 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain PDDEXK_1 PF12705.2 gi|397779901|ref|YP_006544374.1| - 0.0011 18.4 0.0 0.0025 17.2 0.0 1.6 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_22 PF13401.1 gi|397779901|ref|YP_006544374.1| - 0.0016 18.6 0.0 0.0077 16.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain Helicase_RecD PF05127.9 gi|397779901|ref|YP_006544374.1| - 0.0032 17.1 0.0 0.0064 16.1 0.0 1.5 1 0 0 1 1 1 1 Helicase AAA_25 PF13481.1 gi|397779901|ref|YP_006544374.1| - 0.0035 16.7 0.0 0.011 15.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|397779901|ref|YP_006544374.1| - 0.0042 16.6 0.0 11 5.4 0.0 3.2 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase UvrD_C_2 PF13538.1 gi|397779901|ref|YP_006544374.1| - 0.0094 16.0 0.0 0.027 14.5 0.0 1.8 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain T2SE PF00437.15 gi|397779901|ref|YP_006544374.1| - 0.033 13.0 0.0 0.28 10.0 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|397779901|ref|YP_006544374.1| - 0.064 13.2 0.4 0.29 11.1 0.1 2.3 2 1 0 2 2 2 0 AAA ATPase domain DUF2075 PF09848.4 gi|397779901|ref|YP_006544374.1| - 0.065 12.1 0.0 5.5 5.8 0.0 2.7 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|397779901|ref|YP_006544374.1| - 0.066 12.6 0.0 0.19 11.1 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.13 gi|397779901|ref|YP_006544374.1| - 0.09 12.2 0.0 1.8 7.9 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA PF00004.24 gi|397779901|ref|YP_006544374.1| - 0.18 11.9 0.0 0.56 10.4 0.0 1.8 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Cas_Cas4 PF01930.12 gi|397779901|ref|YP_006544374.1| - 0.55 10.1 0.3 3.4 7.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF83 LTD PF00932.14 gi|397779902|ref|YP_006544375.1| - 6.9e-19 68.0 3.4 7.8e-19 67.8 1.4 1.9 2 0 0 2 2 2 1 Lamin Tail Domain Lactamase_B PF00753.22 gi|397779902|ref|YP_006544375.1| - 1.3e-16 60.8 2.1 1.7e-16 60.4 0.9 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|397779902|ref|YP_006544375.1| - 1.4e-05 24.7 0.0 2.1e-05 24.1 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|397779902|ref|YP_006544375.1| - 0.00015 21.5 0.1 0.00058 19.6 0.0 2.0 1 1 1 2 2 2 1 Beta-lactamase superfamily domain DUF498 PF04430.9 gi|397779902|ref|YP_006544375.1| - 0.031 13.8 0.0 0.088 12.3 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) DUF3006 PF11213.3 gi|397779903|ref|YP_006544376.1| - 6.6e-20 70.6 2.3 7.3e-20 70.4 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) S1_2 PF13509.1 gi|397779903|ref|YP_006544376.1| - 0.13 12.2 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 S1 domain ATP-cone PF03477.11 gi|397779904|ref|YP_006544377.1| - 2.5e-07 31.0 0.0 2.9e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 ATP cone domain MatE PF01554.13 gi|397779905|ref|YP_006544378.1| - 3.5e-45 153.5 48.0 8.8e-27 93.7 9.9 2.5 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|397779905|ref|YP_006544378.1| - 4.3e-12 46.0 8.8 4.3e-12 46.0 6.1 4.9 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain HATPase_c PF02518.21 gi|397779906|ref|YP_006544379.1| - 1.4e-20 73.0 0.0 3.4e-20 71.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|397779906|ref|YP_006544379.1| - 1.9e-20 72.7 1.0 5.2e-20 71.3 0.0 2.4 3 0 0 3 3 3 1 PAS fold GAF_2 PF13185.1 gi|397779906|ref|YP_006544379.1| - 1.7e-15 57.7 0.2 8.9e-14 52.2 0.0 3.1 3 0 0 3 3 3 1 GAF domain PAS_9 PF13426.1 gi|397779906|ref|YP_006544379.1| - 8e-12 45.4 0.1 2.2e-06 27.9 0.0 2.9 2 1 0 2 2 2 2 PAS domain GAF PF01590.21 gi|397779906|ref|YP_006544379.1| - 2.4e-08 34.2 0.0 7.8e-07 29.3 0.0 2.6 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|397779906|ref|YP_006544379.1| - 2.4e-08 34.1 0.0 1.1e-07 32.0 0.0 2.2 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.5 gi|397779906|ref|YP_006544379.1| - 2.9e-08 33.7 1.3 0.0099 15.9 0.0 3.6 2 1 0 2 2 2 2 PAS fold PAS PF00989.19 gi|397779906|ref|YP_006544379.1| - 1.9e-07 30.8 0.1 0.00092 18.9 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c_5 PF14501.1 gi|397779906|ref|YP_006544379.1| - 0.00068 19.3 0.0 0.0015 18.2 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|397779906|ref|YP_006544379.1| - 0.019 14.7 0.0 0.051 13.3 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PBP PF01161.15 gi|397779907|ref|YP_006544380.1| - 2.4e-40 137.7 0.0 3e-40 137.4 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Sod_Fe_C PF02777.13 gi|397779908|ref|YP_006544381.1| - 7.2e-38 128.6 0.3 1.1e-37 128.0 0.2 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|397779908|ref|YP_006544381.1| - 3.2e-32 110.6 0.3 3.2e-32 110.6 0.2 1.6 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Glyco_tranf_2_3 PF13641.1 gi|397779909|ref|YP_006544382.1| - 8.7e-36 123.8 0.0 1.5e-35 123.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|397779909|ref|YP_006544382.1| - 3.6e-24 85.5 0.8 3.6e-24 85.5 0.5 2.5 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|397779909|ref|YP_006544382.1| - 1.8e-17 63.5 0.0 2.3e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|397779909|ref|YP_006544382.1| - 2.6e-13 49.6 0.0 4.2e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Cellulose_synt PF03552.9 gi|397779909|ref|YP_006544382.1| - 2.8e-10 39.1 3.1 8.8e-07 27.6 2.2 2.2 1 1 1 2 2 2 2 Cellulose synthase ATP-grasp_5 PF13549.1 gi|397779910|ref|YP_006544383.1| - 2.7e-70 236.0 0.1 4.2e-70 235.4 0.1 1.2 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|397779910|ref|YP_006544383.1| - 1e-50 170.9 0.1 2e-50 170.0 0.0 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|397779910|ref|YP_006544383.1| - 8e-25 87.2 0.2 4e-24 85.0 0.0 2.4 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|397779910|ref|YP_006544383.1| - 2e-15 57.0 1.1 1.3e-14 54.4 0.1 2.9 3 0 0 3 3 3 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|397779910|ref|YP_006544383.1| - 1.1e-05 24.9 0.2 2.1e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|397779910|ref|YP_006544383.1| - 0.00014 21.6 0.0 0.00027 20.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|397779910|ref|YP_006544383.1| - 0.0031 17.0 0.1 0.0087 15.5 0.0 1.7 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp PF02222.17 gi|397779910|ref|YP_006544383.1| - 0.013 14.8 0.0 0.029 13.7 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|397779910|ref|YP_006544383.1| - 0.042 13.1 0.1 0.097 11.9 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain NAD_Gly3P_dh_N PF01210.18 gi|397779910|ref|YP_006544383.1| - 0.085 12.5 0.1 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ATPgrasp_Ter PF15632.1 gi|397779910|ref|YP_006544383.1| - 0.17 10.5 0.0 0.28 9.8 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon MFS_1 PF07690.11 gi|397779911|ref|YP_006544384.1| - 5.3e-45 153.6 50.0 1e-36 126.3 24.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|397779911|ref|YP_006544384.1| - 2.1e-10 39.3 24.5 1.2e-05 23.6 7.8 2.0 1 1 1 2 2 2 2 Transmembrane secretion effector LacY_symp PF01306.14 gi|397779911|ref|YP_006544384.1| - 9.1e-07 27.7 10.7 9.3e-05 21.1 0.8 2.4 2 1 0 2 2 2 2 LacY proton/sugar symporter MFS_1_like PF12832.2 gi|397779911|ref|YP_006544384.1| - 1.5e-06 27.9 13.5 0.006 16.3 0.2 4.3 3 1 1 4 4 4 2 MFS_1 like family Folate_carrier PF01770.13 gi|397779911|ref|YP_006544384.1| - 7.2e-05 21.4 1.6 0.00015 20.4 1.1 1.5 1 0 0 1 1 1 1 Reduced folate carrier MMR_HSR1 PF01926.18 gi|397779912|ref|YP_006544385.1| - 8e-20 70.9 0.1 1.6e-19 69.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|397779912|ref|YP_006544385.1| - 1.6e-19 69.4 0.0 3.2e-19 68.5 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|397779912|ref|YP_006544385.1| - 1.1e-14 53.9 0.0 5.1e-10 38.8 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B AIG1 PF04548.11 gi|397779912|ref|YP_006544385.1| - 0.00013 21.1 0.0 0.00024 20.2 0.0 1.4 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.18 gi|397779912|ref|YP_006544385.1| - 0.00017 21.4 0.3 0.044 13.6 0.1 2.4 2 0 0 2 2 2 1 Dynamin family GTP_EFTU PF00009.22 gi|397779912|ref|YP_006544385.1| - 0.00025 20.5 0.6 0.053 12.9 0.0 3.2 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain SRPRB PF09439.5 gi|397779912|ref|YP_006544385.1| - 0.00034 19.8 0.0 0.0029 16.8 0.0 2.1 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Arf PF00025.16 gi|397779912|ref|YP_006544385.1| - 0.00058 19.1 0.3 0.13 11.5 0.0 2.7 2 1 1 3 3 3 1 ADP-ribosylation factor family DUF258 PF03193.11 gi|397779912|ref|YP_006544385.1| - 0.0013 17.9 0.0 0.0033 16.6 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 cobW PF02492.14 gi|397779912|ref|YP_006544385.1| - 0.0016 17.9 1.2 0.55 9.6 0.1 2.8 2 1 1 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|397779912|ref|YP_006544385.1| - 0.0026 18.2 0.0 0.0066 16.9 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein ArgK PF03308.11 gi|397779912|ref|YP_006544385.1| - 0.0056 15.4 0.1 0.027 13.2 0.1 2.1 2 0 0 2 2 2 1 ArgK protein Ras PF00071.17 gi|397779912|ref|YP_006544385.1| - 0.007 15.7 0.1 0.39 10.0 0.0 2.4 2 0 0 2 2 2 1 Ras family AAA_28 PF13521.1 gi|397779912|ref|YP_006544385.1| - 0.027 14.4 0.1 0.065 13.1 0.1 1.7 1 0 0 1 1 1 0 AAA domain MCM PF00493.18 gi|397779912|ref|YP_006544385.1| - 0.042 12.6 0.0 0.067 11.9 0.0 1.3 1 0 0 1 1 1 0 MCM2/3/5 family RHD3 PF05879.7 gi|397779912|ref|YP_006544385.1| - 0.049 11.5 0.2 0.14 10.0 0.1 1.7 2 0 0 2 2 2 0 Root hair defective 3 GTP-binding protein (RHD3) AAA_18 PF13238.1 gi|397779912|ref|YP_006544385.1| - 0.072 13.3 0.2 0.25 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|397779912|ref|YP_006544385.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain TRM PF02005.11 gi|397779913|ref|YP_006544386.1| - 1.3e-92 310.6 0.0 1.4e-92 310.5 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|397779913|ref|YP_006544386.1| - 0.0016 18.4 0.3 0.0035 17.3 0.1 1.7 2 1 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|397779913|ref|YP_006544386.1| - 0.038 13.3 0.0 0.064 12.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DUF2067 PF09840.4 gi|397779913|ref|YP_006544386.1| - 0.056 12.9 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) UbiA PF01040.13 gi|590000627|ref|YP_006544387.2| - 3.1e-40 138.0 26.3 4.1e-40 137.6 18.2 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF4006 PF13179.1 gi|590000627|ref|YP_006544387.2| - 0.04 13.4 1.5 0.22 11.1 1.0 2.3 1 0 0 1 1 1 0 Family of unknown function (DUF4006) Bactofilin PF04519.8 gi|397779915|ref|YP_006544388.1| - 5.5e-05 23.1 0.1 0.00035 20.5 0.0 2.0 1 1 1 2 2 2 1 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|397779915|ref|YP_006544388.1| - 0.00034 19.9 7.4 0.14 11.7 0.1 3.8 2 1 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) DUF342 PF03961.8 gi|397779915|ref|YP_006544388.1| - 0.017 13.5 0.1 0.021 13.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF116 PF01976.12 gi|397779916|ref|YP_006544389.1| - 9.2e-48 161.7 0.0 1.2e-47 161.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 HTH_25 PF13413.1 gi|397779916|ref|YP_006544389.1| - 0.00071 19.1 0.0 0.0095 15.5 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain IF-2B PF01008.12 gi|397779917|ref|YP_006544390.1| - 6e-82 274.7 0.0 7.1e-82 274.5 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Pyr_redox_2 PF07992.9 gi|397779918|ref|YP_006544391.1| - 1e-18 67.9 0.0 2.3e-18 66.8 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.22 gi|397779918|ref|YP_006544391.1| - 3.7e-11 42.1 14.9 8.6e-06 25.1 1.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain DAO PF01266.19 gi|397779918|ref|YP_006544391.1| - 2.2e-08 33.3 5.1 1.2e-06 27.6 0.7 3.3 3 1 0 4 4 4 1 FAD dependent oxidoreductase Fer4_8 PF13183.1 gi|397779918|ref|YP_006544391.1| - 4.6e-08 32.9 11.4 6.1e-05 22.9 7.2 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain NAD_binding_8 PF13450.1 gi|397779918|ref|YP_006544391.1| - 6.7e-08 32.4 0.1 3.2e-07 30.2 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Fer4_9 PF13187.1 gi|397779918|ref|YP_006544391.1| - 3.3e-07 30.4 10.6 3.3e-07 30.4 7.3 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|397779918|ref|YP_006544391.1| - 5.1e-07 30.0 0.9 1.2e-05 25.6 0.6 2.7 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|397779918|ref|YP_006544391.1| - 5.9e-07 28.6 1.3 9.5e-07 28.0 0.6 1.5 2 0 0 2 2 2 1 FAD binding domain Fer4_10 PF13237.1 gi|397779918|ref|YP_006544391.1| - 6.2e-07 29.1 4.9 0.00027 20.6 0.2 3.1 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397779918|ref|YP_006544391.1| - 1.4e-06 27.8 18.7 0.0015 18.3 2.2 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Pyr_redox_3 PF13738.1 gi|397779918|ref|YP_006544391.1| - 2.5e-06 27.7 0.8 0.00061 19.9 0.2 2.5 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|397779918|ref|YP_006544391.1| - 2.8e-06 26.5 0.1 7.7e-06 25.1 0.0 1.8 1 0 0 1 1 1 1 Thi4 family Fer4_17 PF13534.1 gi|397779918|ref|YP_006544391.1| - 4.3e-06 26.9 4.8 4.3e-06 26.9 3.3 2.6 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397779918|ref|YP_006544391.1| - 4.7e-06 26.3 14.5 0.00079 19.2 1.3 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain FAD_oxidored PF12831.2 gi|397779918|ref|YP_006544391.1| - 4.9e-06 25.8 0.0 1.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_7 PF12838.2 gi|397779918|ref|YP_006544391.1| - 6.7e-06 26.3 20.7 3.3e-05 24.1 8.4 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397779918|ref|YP_006544391.1| - 8.8e-06 25.3 20.4 0.0013 18.4 2.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain HI0933_like PF03486.9 gi|397779918|ref|YP_006544391.1| - 9.9e-06 24.2 0.6 0.00023 19.7 0.4 2.2 1 1 1 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|397779918|ref|YP_006544391.1| - 3e-05 23.0 0.2 7.1e-05 21.8 0.1 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Fer4_15 PF13459.1 gi|397779918|ref|YP_006544391.1| - 0.00011 22.6 5.6 0.057 13.9 0.3 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|397779918|ref|YP_006544391.1| - 0.00024 21.7 13.5 0.0029 18.3 0.0 3.3 3 1 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|397779918|ref|YP_006544391.1| - 0.00036 20.8 7.5 0.19 12.1 0.6 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Lycopene_cycl PF05834.7 gi|397779918|ref|YP_006544391.1| - 0.00089 18.2 0.5 0.0015 17.4 0.3 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|397779918|ref|YP_006544391.1| - 0.0031 16.6 0.7 0.006 15.6 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|397779918|ref|YP_006544391.1| - 0.0066 16.2 0.1 0.031 14.0 0.1 2.2 1 0 0 1 1 1 1 FAD-NAD(P)-binding Fer4_18 PF13746.1 gi|397779918|ref|YP_006544391.1| - 0.0069 16.7 17.0 0.041 14.3 3.5 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain AlaDh_PNT_C PF01262.16 gi|397779918|ref|YP_006544391.1| - 0.016 14.7 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Fer4_4 PF12800.2 gi|397779918|ref|YP_006544391.1| - 0.018 15.3 2.4 0.018 15.3 1.7 3.2 4 0 0 4 4 2 0 4Fe-4S binding domain 3HCDH_N PF02737.13 gi|397779918|ref|YP_006544391.1| - 0.038 13.6 0.2 0.068 12.8 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|397779918|ref|YP_006544391.1| - 0.1 11.6 0.0 1 8.3 0.0 2.0 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Hexapep PF00132.19 gi|397779919|ref|YP_006544392.1| - 5.8e-17 60.3 19.4 1.1e-07 31.0 3.3 4.2 2 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|397779919|ref|YP_006544392.1| - 4.7e-07 29.2 18.5 0.0027 17.2 3.3 4.1 3 1 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|397779919|ref|YP_006544392.1| - 0.069 11.7 0.2 0.074 11.5 0.1 1.2 1 0 0 1 1 1 0 L-fucokinase CTP_transf_2 PF01467.21 gi|397779920|ref|YP_006544393.1| - 2.9e-13 50.1 0.0 7.3e-13 48.8 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|397779920|ref|YP_006544393.1| - 0.00064 19.3 0.0 0.0021 17.6 0.0 1.8 2 0 0 2 2 2 1 FAD synthetase PyrI PF01948.13 gi|397779921|ref|YP_006544394.1| - 2.4e-37 126.8 1.5 3.1e-37 126.4 1.0 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|397779921|ref|YP_006544394.1| - 7.5e-17 60.5 0.3 1.2e-16 59.8 0.2 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|397779922|ref|YP_006544395.1| - 2.2e-46 157.0 0.0 2.6e-45 153.5 0.0 2.1 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|397779922|ref|YP_006544395.1| - 7.3e-36 123.4 0.0 1.1e-35 122.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DnaJ_CXXCXGXG PF00684.14 gi|397779923|ref|YP_006544396.1| - 0.0011 18.9 10.5 0.0018 18.3 7.4 1.4 1 1 0 1 1 1 1 DnaJ central domain MDFI PF15316.1 gi|397779923|ref|YP_006544396.1| - 0.0082 16.1 8.4 0.0084 16.1 5.8 1.0 1 0 0 1 1 1 1 MyoD family inhibitor Ribosomal_S10 PF00338.17 gi|397779924|ref|YP_006544397.1| - 0.098 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S10p/S20e GYD PF08734.6 gi|397779924|ref|YP_006544397.1| - 0.14 11.9 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 GYD domain Methyltransf_18 PF12847.2 gi|397779925|ref|YP_006544398.1| - 1.4e-10 41.7 0.0 2.1e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|397779925|ref|YP_006544398.1| - 6.1e-10 39.1 0.5 1.9e-09 37.5 0.3 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397779925|ref|YP_006544398.1| - 4.5e-07 29.5 0.0 5.9e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|397779925|ref|YP_006544398.1| - 1.7e-06 27.2 0.0 2.5e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.5 gi|397779925|ref|YP_006544398.1| - 2.5e-05 23.9 0.0 9.8e-05 21.9 0.0 1.7 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.14 gi|397779925|ref|YP_006544398.1| - 3.6e-05 23.3 0.0 5e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|397779925|ref|YP_006544398.1| - 0.00011 21.6 0.0 0.00027 20.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|397779925|ref|YP_006544398.1| - 0.00029 21.1 0.0 0.00072 19.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|397779925|ref|YP_006544398.1| - 0.00038 20.8 0.0 0.0007 20.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397779925|ref|YP_006544398.1| - 0.0011 18.7 0.0 0.0046 16.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|397779925|ref|YP_006544398.1| - 0.0014 19.4 0.0 0.0023 18.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|397779925|ref|YP_006544398.1| - 0.0025 16.9 0.0 0.0035 16.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.7 gi|397779925|ref|YP_006544398.1| - 0.027 14.9 0.0 0.094 13.2 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|397779925|ref|YP_006544398.1| - 0.12 11.8 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase NAC PF01849.13 gi|397779926|ref|YP_006544399.1| - 2.5e-17 62.1 2.7 3e-17 61.8 1.2 1.6 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|397779926|ref|YP_006544399.1| - 0.00015 21.4 2.4 0.0026 17.5 0.0 2.4 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|397779926|ref|YP_006544399.1| - 0.036 13.6 0.1 0.062 12.8 0.0 1.4 1 0 0 1 1 1 0 UBA-like domain CUE PF02845.11 gi|397779926|ref|YP_006544399.1| - 0.14 11.6 1.7 0.16 11.4 0.1 2.0 2 0 0 2 2 2 0 CUE domain PUA PF01472.15 gi|590000628|ref|YP_006544400.2| - 2.4e-15 55.9 0.5 3.1e-15 55.6 0.3 1.2 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.1 gi|590000628|ref|YP_006544400.2| - 1e-08 34.8 0.6 1.7e-08 34.1 0.1 1.7 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase Antitoxin-MazE PF04014.13 gi|590000628|ref|YP_006544400.2| - 0.035 13.8 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE DHH PF01368.15 gi|397779928|ref|YP_006544401.1| - 2.4e-10 40.2 0.0 3.8e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|397779928|ref|YP_006544401.1| - 4.1e-10 39.2 0.1 8.6e-10 38.1 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain Carb_kinase PF01256.12 gi|397779929|ref|YP_006544402.1| - 2.6e-44 151.3 0.4 4e-44 150.7 0.2 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|397779929|ref|YP_006544402.1| - 5.4e-33 113.9 0.0 1e-32 113.1 0.0 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.10 gi|397779929|ref|YP_006544402.1| - 0.0016 17.6 0.3 0.0032 16.6 0.0 1.6 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family Ribosomal_S5_C PF03719.10 gi|397779929|ref|YP_006544402.1| - 0.072 12.3 0.8 0.79 9.0 0.1 2.6 2 0 0 2 2 2 0 Ribosomal protein S5, C-terminal domain MoaC PF01967.16 gi|397779930|ref|YP_006544403.1| - 1.8e-47 160.4 0.1 2.1e-47 160.2 0.1 1.0 1 0 0 1 1 1 1 MoaC family Ribosomal_L15e PF00827.12 gi|397779931|ref|YP_006544404.1| - 1.9e-83 278.6 10.4 2.3e-83 278.4 7.2 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNase_P_p30 PF01876.11 gi|590000629|ref|YP_006544405.2| - 1.9e-31 108.3 0.8 2.4e-31 108.0 0.6 1.1 1 0 0 1 1 1 1 RNase P subunit p30 RNase_P_Rpp14 PF01900.14 gi|397779933|ref|YP_006544406.1| - 1.2e-17 63.7 0.1 1.9e-17 63.1 0.1 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|397779934|ref|YP_006544407.1| - 8.8e-59 197.9 0.1 1.1e-58 197.6 0.1 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|397779934|ref|YP_006544407.1| - 1.2e-14 53.2 0.2 2.2e-14 52.4 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature DUF3237 PF11578.3 gi|397779934|ref|YP_006544407.1| - 0.076 12.3 0.0 0.16 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3237) SBDS PF01172.13 gi|397779935|ref|YP_006544408.1| - 4e-25 87.4 0.0 5.9e-25 86.8 0.0 1.2 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|397779935|ref|YP_006544408.1| - 1.4e-23 82.9 0.0 1.9e-23 82.5 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain MIase PF02426.11 gi|397779935|ref|YP_006544408.1| - 0.14 12.0 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Muconolactone delta-isomerase Ribosomal_L37ae PF01780.14 gi|397779936|ref|YP_006544409.1| - 1.2e-34 117.9 2.9 1.4e-34 117.8 2.0 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.6 gi|397779936|ref|YP_006544409.1| - 0.0018 17.9 1.1 0.0027 17.3 0.8 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.16 gi|397779936|ref|YP_006544409.1| - 0.0027 17.5 0.4 0.0037 17.0 0.2 1.2 1 0 0 1 1 1 1 IBR domain TF_Zn_Ribbon PF08271.7 gi|397779936|ref|YP_006544409.1| - 0.018 14.3 0.2 0.027 13.7 0.1 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Rep_fac-A_C PF08646.5 gi|397779936|ref|YP_006544409.1| - 0.019 14.7 0.3 0.022 14.4 0.2 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Zn_Tnp_IS1595 PF12760.2 gi|397779936|ref|YP_006544409.1| - 0.03 14.1 3.6 0.044 13.6 2.5 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|397779936|ref|YP_006544409.1| - 0.031 14.2 4.0 0.13 12.2 0.3 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-BED PF02892.10 gi|397779936|ref|YP_006544409.1| - 0.097 12.4 0.5 0.16 11.7 0.2 1.5 1 1 0 1 1 1 0 BED zinc finger zf-C2H2_4 PF13894.1 gi|397779936|ref|YP_006544409.1| - 0.12 12.8 1.3 9.1 6.8 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger RPA_interact_C PF14768.1 gi|397779936|ref|YP_006544409.1| - 0.12 12.7 0.1 0.15 12.4 0.0 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Elf1 PF05129.8 gi|397779936|ref|YP_006544409.1| - 0.16 11.7 1.2 0.29 10.8 0.8 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_Tnp_IS1 PF03811.8 gi|397779936|ref|YP_006544409.1| - 0.19 11.2 4.9 0.64 9.5 3.4 1.9 1 1 0 1 1 1 0 InsA N-terminal domain Prim_Zn_Ribbon PF08273.7 gi|397779936|ref|YP_006544409.1| - 0.55 10.3 7.0 1.9 8.6 4.9 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Nudix_N_2 PF14803.1 gi|397779936|ref|YP_006544409.1| - 0.83 9.3 3.5 4.3 7.0 0.3 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-ISL3 PF14690.1 gi|397779936|ref|YP_006544409.1| - 0.99 9.4 4.7 2 8.5 0.2 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UPF0547 PF10571.4 gi|397779936|ref|YP_006544409.1| - 2.7 7.7 5.5 7.1 6.4 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|397779937|ref|YP_006544410.1| - 4.9e-12 45.0 7.6 6.2e-12 44.7 5.3 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|397779937|ref|YP_006544410.1| - 0.00057 19.2 1.8 0.00098 18.5 1.2 1.4 1 1 0 1 1 1 1 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|397779937|ref|YP_006544410.1| - 0.0011 18.7 3.5 0.044 13.6 0.7 2.1 1 1 1 2 2 2 1 Cysteine-rich CPXCG zf-ribbon_3 PF13248.1 gi|397779937|ref|YP_006544410.1| - 0.0029 16.7 8.2 0.037 13.2 1.8 1.8 1 1 1 2 2 2 2 zinc-ribbon domain HypA PF01155.14 gi|397779937|ref|YP_006544410.1| - 0.0045 16.6 0.3 0.0045 16.6 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|397779937|ref|YP_006544410.1| - 0.0049 16.6 0.5 0.0063 16.2 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-AN1 PF01428.11 gi|397779937|ref|YP_006544410.1| - 0.0093 15.8 1.4 0.013 15.4 1.0 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF329 PF03884.9 gi|397779937|ref|YP_006544410.1| - 0.011 15.3 1.4 0.091 12.3 1.5 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF329) A2L_zn_ribbon PF08792.5 gi|397779937|ref|YP_006544410.1| - 0.017 14.6 0.2 0.21 11.1 0.0 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF951 PF06107.6 gi|397779937|ref|YP_006544410.1| - 0.018 14.5 3.7 0.023 14.1 0.2 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zinc_ribbon_4 PF13717.1 gi|397779937|ref|YP_006544410.1| - 0.019 14.6 3.8 0.99 9.1 2.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|397779937|ref|YP_006544410.1| - 0.019 14.5 3.9 1 9.0 2.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|397779937|ref|YP_006544410.1| - 0.022 14.5 3.9 0.63 9.8 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|397779937|ref|YP_006544410.1| - 0.025 14.1 1.8 3.5 7.3 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Prok-RING_1 PF14446.1 gi|397779937|ref|YP_006544410.1| - 0.029 14.1 2.4 0.039 13.6 1.7 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|397779937|ref|YP_006544410.1| - 0.032 14.0 0.3 0.036 13.8 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons NinF PF05810.7 gi|397779937|ref|YP_006544410.1| - 0.034 13.9 0.3 0.035 13.9 0.2 1.1 1 0 0 1 1 1 0 NinF protein zf-Mss51 PF13824.1 gi|397779937|ref|YP_006544410.1| - 0.035 13.9 0.4 0.042 13.7 0.3 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Desulfoferrod_N PF06397.7 gi|397779937|ref|YP_006544410.1| - 0.039 13.3 1.2 1.7 8.1 0.1 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF1272 PF06906.6 gi|397779937|ref|YP_006544410.1| - 0.045 13.5 0.3 0.049 13.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) TF_Zn_Ribbon PF08271.7 gi|397779937|ref|YP_006544410.1| - 0.06 12.6 0.6 0.65 9.3 0.0 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding CpXC PF14353.1 gi|397779937|ref|YP_006544410.1| - 0.066 13.1 2.3 2.4 8.1 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-C3HC4_3 PF13920.1 gi|397779937|ref|YP_006544410.1| - 0.081 12.6 1.4 0.11 12.1 1.0 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ISL3 PF14690.1 gi|397779937|ref|YP_006544410.1| - 0.083 12.9 0.4 0.083 12.9 0.3 2.0 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2072 PF09845.4 gi|397779937|ref|YP_006544410.1| - 0.11 12.4 0.9 0.11 12.4 0.6 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) FANCL_C PF11793.3 gi|397779937|ref|YP_006544410.1| - 0.17 11.8 1.6 1 9.3 0.1 2.0 1 1 1 2 2 2 0 FANCL C-terminal domain PyrI_C PF02748.10 gi|397779937|ref|YP_006544410.1| - 0.18 11.2 2.6 0.4 10.1 1.8 1.6 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Lar_restr_allev PF14354.1 gi|397779937|ref|YP_006544410.1| - 0.21 11.8 1.4 0.49 10.7 0.0 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn_ribbon_recom PF13408.1 gi|397779937|ref|YP_006544410.1| - 0.21 11.8 1.9 1.6 9.0 0.1 2.0 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-RING_3 PF14369.1 gi|397779937|ref|YP_006544410.1| - 0.22 11.5 1.7 0.36 10.8 1.2 1.4 1 1 0 1 1 1 0 zinc-finger UPF0547 PF10571.4 gi|397779937|ref|YP_006544410.1| - 0.23 11.1 6.7 0.49 10.1 4.7 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Transp_Tc5_C PF04236.10 gi|397779937|ref|YP_006544410.1| - 0.25 11.6 2.4 3.6 7.8 0.1 2.0 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain zf-LITAF-like PF10601.4 gi|397779937|ref|YP_006544410.1| - 0.29 11.0 2.4 3.4 7.6 0.1 2.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain DUF2296 PF10058.4 gi|397779937|ref|YP_006544410.1| - 0.3 10.8 2.9 8.6 6.1 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Elf1 PF05129.8 gi|397779937|ref|YP_006544410.1| - 0.31 10.7 2.6 2.1 8.0 0.2 1.9 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Sgf11 PF08209.6 gi|397779937|ref|YP_006544410.1| - 0.38 10.0 2.5 7.7 5.9 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|397779937|ref|YP_006544410.1| - 0.39 10.7 4.6 4.7 7.2 3.2 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-Di19 PF05605.7 gi|397779937|ref|YP_006544410.1| - 0.46 10.6 3.6 0.87 9.7 0.3 2.0 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding RRN7 PF11781.3 gi|397779937|ref|YP_006544410.1| - 0.49 9.9 2.6 0.96 9.0 0.0 2.0 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-FCS PF06467.9 gi|397779937|ref|YP_006544410.1| - 0.59 9.8 0.1 0.59 9.8 0.1 2.0 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif OrfB_Zn_ribbon PF07282.6 gi|397779937|ref|YP_006544410.1| - 0.6 9.8 2.6 1.5 8.5 1.7 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Mu-like_Com PF10122.4 gi|397779937|ref|YP_006544410.1| - 0.65 9.1 7.0 19 4.4 4.9 2.1 1 1 0 1 1 1 0 Mu-like prophage protein Com C1_1 PF00130.17 gi|397779937|ref|YP_006544410.1| - 0.69 9.6 3.0 6.2 6.6 0.4 2.0 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DiS_P_DiS PF06750.8 gi|397779937|ref|YP_006544410.1| - 0.75 9.6 2.7 17 5.2 1.9 2.0 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Cys_rich_KTR PF14205.1 gi|397779937|ref|YP_006544410.1| - 1 8.8 4.4 6.7 6.2 0.2 2.1 1 1 1 2 2 2 0 Cysteine-rich KTR zf-HIT PF04438.11 gi|397779937|ref|YP_006544410.1| - 2 8.1 8.7 31 4.3 6.2 2.0 1 1 0 1 1 1 0 HIT zinc finger Zn_Tnp_IS1 PF03811.8 gi|397779937|ref|YP_006544410.1| - 2.3 7.7 5.9 1.8 8.1 0.2 2.1 1 1 0 2 2 2 0 InsA N-terminal domain Pcc1 PF09341.5 gi|590000630|ref|YP_006544412.2| - 1.6e-12 47.3 0.3 1.7e-12 47.1 0.2 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 AsnC_trans_reg PF01037.16 gi|590000630|ref|YP_006544412.2| - 0.034 13.8 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 AsnC family Prefoldin_2 PF01920.15 gi|590000631|ref|YP_006544413.2| - 1.2e-21 76.4 11.7 1.3e-21 76.3 8.1 1.0 1 0 0 1 1 1 1 Prefoldin subunit MAD PF05557.8 gi|590000631|ref|YP_006544413.2| - 0.00061 18.0 6.8 0.00071 17.8 4.7 1.0 1 0 0 1 1 1 1 Mitotic checkpoint protein V-SNARE PF05008.10 gi|590000631|ref|YP_006544413.2| - 0.0009 19.3 7.7 0.0082 16.2 0.5 2.2 2 0 0 2 2 2 1 Vesicle transport v-SNARE protein N-terminus Prefoldin PF02996.12 gi|590000631|ref|YP_006544413.2| - 0.0019 17.8 7.4 0.0025 17.4 0.6 2.2 1 1 1 2 2 2 1 Prefoldin subunit Filament PF00038.16 gi|590000631|ref|YP_006544413.2| - 0.0032 16.9 9.3 0.29 10.5 1.6 2.0 1 1 0 2 2 2 2 Intermediate filament protein Prefoldin_3 PF13758.1 gi|590000631|ref|YP_006544413.2| - 0.0043 16.7 3.7 0.0068 16.1 2.5 1.3 1 1 0 1 1 1 1 Prefoldin subunit HWE_HK PF07536.9 gi|590000631|ref|YP_006544413.2| - 0.0045 17.3 0.3 3.2 8.2 0.0 2.3 2 0 0 2 2 2 0 HWE histidine kinase Laminin_II PF06009.7 gi|590000631|ref|YP_006544413.2| - 0.015 15.0 7.2 0.29 10.8 0.5 2.0 1 1 1 2 2 2 0 Laminin Domain II SlyX PF04102.7 gi|590000631|ref|YP_006544413.2| - 0.019 15.3 11.1 0.025 14.9 1.5 2.2 2 0 0 2 2 2 0 SlyX HAUS5 PF14817.1 gi|590000631|ref|YP_006544413.2| - 0.02 13.4 4.7 0.027 13.0 3.3 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 WASH-7_mid PF14744.1 gi|590000631|ref|YP_006544413.2| - 0.024 13.4 2.1 0.028 13.2 1.5 1.0 1 0 0 1 1 1 0 WASH complex subunit 7 IMD PF08397.6 gi|590000631|ref|YP_006544413.2| - 0.029 13.6 0.8 0.04 13.2 0.5 1.3 1 0 0 1 1 1 0 IRSp53/MIM homology domain YlqD PF11068.3 gi|590000631|ref|YP_006544413.2| - 0.031 14.3 3.3 0.031 14.3 2.3 2.1 1 1 0 2 2 2 0 YlqD protein bZIP_1 PF00170.16 gi|590000631|ref|YP_006544413.2| - 0.037 13.9 1.1 0.037 13.9 0.8 2.1 2 0 0 2 2 2 0 bZIP transcription factor GAS PF13851.1 gi|590000631|ref|YP_006544413.2| - 0.038 13.1 8.7 0.079 12.1 6.1 1.5 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Phage_CP76 PF06892.6 gi|590000631|ref|YP_006544413.2| - 0.05 12.9 1.5 0.063 12.5 1.1 1.1 1 0 0 1 1 1 0 Phage regulatory protein CII (CP76) Snapin_Pallidin PF14712.1 gi|590000631|ref|YP_006544413.2| - 0.052 13.8 8.4 0.39 11.0 0.8 2.2 2 0 0 2 2 2 0 Snapin/Pallidin DUF948 PF06103.6 gi|590000631|ref|YP_006544413.2| - 0.052 13.4 5.6 0.092 12.6 0.3 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) BMFP PF04380.8 gi|590000631|ref|YP_006544413.2| - 0.067 13.3 7.5 0.17 12.0 0.6 2.9 3 0 0 3 3 3 0 Membrane fusogenic activity TrbM PF07424.6 gi|590000631|ref|YP_006544413.2| - 0.069 13.1 0.1 0.082 12.8 0.1 1.1 1 0 0 1 1 1 0 TrbM ATG16 PF08614.6 gi|590000631|ref|YP_006544413.2| - 0.07 12.9 4.9 2.3 7.9 0.9 2.0 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Reo_sigmaC PF04582.7 gi|590000631|ref|YP_006544413.2| - 0.075 12.1 1.5 0.1 11.7 1.1 1.3 1 1 0 1 1 1 0 Reovirus sigma C capsid protein WASH_WAHD PF11945.3 gi|590000631|ref|YP_006544413.2| - 0.11 11.7 1.7 0.14 11.4 1.2 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex Cauli_DNA-bind PF03310.8 gi|590000631|ref|YP_006544413.2| - 0.13 12.1 0.8 0.15 11.9 0.5 1.2 1 0 0 1 1 1 0 Caulimovirus DNA-binding protein Myosin_tail_1 PF01576.14 gi|590000631|ref|YP_006544413.2| - 0.13 9.9 10.3 0.04 11.6 1.4 2.0 1 1 1 2 2 2 0 Myosin tail DUF812 PF05667.6 gi|590000631|ref|YP_006544413.2| - 0.13 10.7 5.1 0.2 10.1 3.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Tup_N PF08581.5 gi|590000631|ref|YP_006544413.2| - 0.15 12.2 7.9 1.1 9.5 0.8 2.2 2 0 0 2 2 2 0 Tup N-terminal Tektin PF03148.9 gi|590000631|ref|YP_006544413.2| - 0.15 10.5 9.5 0.038 12.5 1.3 2.0 1 1 1 2 2 2 0 Tektin family DUF3584 PF12128.3 gi|590000631|ref|YP_006544413.2| - 0.17 9.1 7.7 0.23 8.7 5.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Mnd1 PF03962.10 gi|590000631|ref|YP_006544413.2| - 0.19 11.4 5.4 0.31 10.6 3.7 1.3 1 1 0 1 1 1 0 Mnd1 family FlxA PF14282.1 gi|590000631|ref|YP_006544413.2| - 0.2 11.6 13.1 0.084 12.8 0.7 2.2 2 0 0 2 2 2 0 FlxA-like protein Uds1 PF15456.1 gi|590000631|ref|YP_006544413.2| - 0.21 11.5 4.5 0.31 11.0 2.7 1.5 1 1 1 2 2 2 0 Up-regulated During Septation Nup54 PF13874.1 gi|590000631|ref|YP_006544413.2| - 0.22 11.1 8.1 0.22 11.2 1.0 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 APG6 PF04111.7 gi|590000631|ref|YP_006544413.2| - 0.23 10.4 6.7 0.29 10.1 4.6 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4140 PF13600.1 gi|590000631|ref|YP_006544413.2| - 0.29 11.5 8.4 0.11 12.9 0.8 2.3 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Sipho_Gp157 PF05565.6 gi|590000631|ref|YP_006544413.2| - 0.29 10.6 3.2 0.9 9.0 2.1 1.9 1 1 1 2 2 2 0 Siphovirus Gp157 DivIC PF04977.10 gi|590000631|ref|YP_006544413.2| - 0.4 10.1 12.3 0.14 11.6 1.2 2.1 1 1 1 2 2 2 0 Septum formation initiator DUF2884 PF11101.3 gi|590000631|ref|YP_006544413.2| - 0.42 9.9 11.6 3.9 6.7 8.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) Vps5 PF09325.5 gi|590000631|ref|YP_006544413.2| - 0.5 9.5 6.7 2.2 7.4 0.8 2.0 1 1 1 2 2 2 0 Vps5 C terminal like Troponin PF00992.15 gi|590000631|ref|YP_006544413.2| - 0.55 10.2 5.4 9.2 6.3 0.1 2.1 2 0 0 2 2 2 0 Troponin CCDC-167 PF15188.1 gi|590000631|ref|YP_006544413.2| - 0.56 10.1 4.6 2.2 8.2 2.9 2.0 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 TPR_MLP1_2 PF07926.7 gi|590000631|ref|YP_006544413.2| - 0.6 9.8 10.1 2.6 7.8 6.8 1.6 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein MitMem_reg PF13012.1 gi|590000631|ref|YP_006544413.2| - 0.63 10.1 6.3 3.8 7.6 0.4 2.1 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function DUF4200 PF13863.1 gi|590000631|ref|YP_006544413.2| - 0.65 9.9 8.2 1.2 9.0 1.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) PspB PF06667.7 gi|590000631|ref|YP_006544413.2| - 0.67 9.9 3.0 0.59 10.1 0.3 2.1 2 0 0 2 2 2 0 Phage shock protein B COG2 PF06148.6 gi|590000631|ref|YP_006544413.2| - 0.7 9.7 7.6 3.1 7.6 0.7 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 COG5 PF10392.4 gi|590000631|ref|YP_006544413.2| - 0.8 9.6 5.6 9.9 6.1 0.1 2.1 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Ax_dynein_light PF10211.4 gi|590000631|ref|YP_006544413.2| - 0.87 9.3 8.2 0.19 11.5 1.6 2.0 1 1 0 2 2 2 0 Axonemal dynein light chain Fib_alpha PF08702.5 gi|590000631|ref|YP_006544413.2| - 0.9 9.6 6.6 0.63 10.1 0.4 2.0 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF4404 PF14357.1 gi|590000631|ref|YP_006544413.2| - 0.9 9.9 6.1 2 8.8 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) XhlA PF10779.4 gi|590000631|ref|YP_006544413.2| - 0.97 9.3 3.9 0.57 10.1 0.7 1.9 2 0 0 2 2 2 0 Haemolysin XhlA HSBP1 PF06825.7 gi|590000631|ref|YP_006544413.2| - 1 9.0 10.4 12 5.5 0.0 3.2 2 1 1 3 3 3 0 Heat shock factor binding protein 1 KfrA_N PF11740.3 gi|590000631|ref|YP_006544413.2| - 1 9.8 10.9 0.15 12.5 1.9 2.1 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term OPA3 PF07047.7 gi|590000631|ref|YP_006544413.2| - 1 9.1 6.0 1.7 8.3 4.1 1.4 1 1 0 1 1 1 0 Optic atrophy 3 protein (OPA3) DUF2408 PF10303.4 gi|590000631|ref|YP_006544413.2| - 1.1 9.3 4.6 3.4 7.7 3.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Viral_P18 PF04521.8 gi|590000631|ref|YP_006544413.2| - 1.1 8.6 9.5 0.19 11.1 1.1 2.3 1 1 1 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Med4 PF10018.4 gi|590000631|ref|YP_006544413.2| - 1.2 8.4 6.0 1.3 8.4 0.4 2.0 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 V_ATPase_I PF01496.14 gi|590000631|ref|YP_006544413.2| - 1.5 6.5 6.7 3.3 5.4 4.7 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family BLOC1_2 PF10046.4 gi|590000631|ref|YP_006544413.2| - 1.5 8.9 6.5 6.2 7.0 3.9 2.0 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc24 PF08286.6 gi|590000631|ref|YP_006544413.2| - 1.5 8.5 8.8 2.2 7.9 1.0 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 ADIP PF11559.3 gi|590000631|ref|YP_006544413.2| - 1.6 8.6 11.7 0.42 10.4 1.5 2.0 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Seryl_tRNA_N PF02403.17 gi|590000631|ref|YP_006544413.2| - 1.9 8.5 7.7 0.87 9.6 1.1 2.0 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF2076 PF09849.4 gi|590000631|ref|YP_006544413.2| - 1.9 8.4 9.2 2.9 7.8 6.3 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) DUF972 PF06156.8 gi|590000631|ref|YP_006544413.2| - 2.6 8.4 8.5 9.9 6.5 1.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Tropomyosin_1 PF12718.2 gi|590000631|ref|YP_006544413.2| - 3 7.6 9.0 19 5.0 5.6 2.1 1 1 0 1 1 1 0 Tropomyosin like IncA PF04156.9 gi|590000631|ref|YP_006544413.2| - 4 6.9 13.9 38 3.8 9.6 2.0 1 1 0 1 1 1 0 IncA protein Spc7 PF08317.6 gi|590000631|ref|YP_006544413.2| - 4.4 5.8 9.6 3.3 6.2 0.8 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein Cortex-I_coil PF09304.5 gi|590000631|ref|YP_006544413.2| - 5.1 7.1 9.2 11 6.0 1.4 2.1 2 0 0 2 2 2 0 Cortexillin I, coiled coil Macoilin PF09726.4 gi|590000631|ref|YP_006544413.2| - 5.3 5.1 7.2 5.9 5.0 5.0 1.0 1 0 0 1 1 1 0 Transmembrane protein Cluap1 PF10234.4 gi|590000631|ref|YP_006544413.2| - 5.5 6.1 9.6 7.6 5.6 1.3 2.0 1 1 0 2 2 2 0 Clusterin-associated protein-1 DUF607 PF04678.8 gi|590000631|ref|YP_006544413.2| - 6 6.7 6.7 4.1 7.3 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function, DUF607 DivIVA PF05103.8 gi|590000631|ref|YP_006544413.2| - 8.5 6.4 9.6 28 4.7 1.1 2.0 1 1 1 2 2 2 0 DivIVA protein Prominin PF05478.6 gi|590000631|ref|YP_006544413.2| - 8.8 3.7 7.3 4.6 4.6 0.4 1.9 1 1 1 2 2 2 0 Prominin GP41 PF00517.12 gi|590000631|ref|YP_006544413.2| - 8.8 5.8 10.0 1.8 8.0 0.7 2.1 1 1 1 2 2 2 0 Retroviral envelope protein HMGL-like PF00682.14 gi|397779941|ref|YP_006544414.1| - 1.4e-73 247.4 1.6 2.5e-73 246.6 1.1 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|397779941|ref|YP_006544414.1| - 6.1e-32 110.2 0.3 1.2e-31 109.2 0.2 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain HEAT_2 PF13646.1 gi|397779943|ref|YP_006544416.1| - 1e-31 109.0 3.5 2.5e-16 59.7 0.8 2.1 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.11 gi|397779943|ref|YP_006544416.1| - 1.1e-20 71.9 19.7 2.1e-06 27.6 0.6 4.9 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|397779943|ref|YP_006544416.1| - 1.1e-17 62.3 0.5 5e-06 26.1 0.0 4.5 5 0 0 5 5 5 4 HEAT repeat HEAT_EZ PF13513.1 gi|397779943|ref|YP_006544416.1| - 1.8e-10 40.9 13.5 0.00099 19.5 0.1 4.8 3 2 2 5 5 5 5 HEAT-like repeat Vac14_Fab1_bd PF12755.2 gi|397779943|ref|YP_006544416.1| - 0.0013 19.1 0.1 0.52 10.7 0.0 3.6 2 2 2 4 4 4 1 Vacuolar 14 Fab1-binding region Arm PF00514.18 gi|397779943|ref|YP_006544416.1| - 0.11 12.3 0.3 8.3 6.4 0.0 3.5 4 1 0 4 4 4 0 Armadillo/beta-catenin-like repeat PP2C_2 PF13672.1 gi|590000632|ref|YP_006544417.2| - 2.2e-14 53.3 1.2 5.8e-14 51.9 0.8 1.5 1 1 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.16 gi|590000632|ref|YP_006544417.2| - 4.7e-12 45.8 0.3 1.8e-06 27.5 0.0 2.1 2 0 0 2 2 2 2 Protein phosphatase 2C SpoIIE PF07228.7 gi|590000632|ref|YP_006544417.2| - 5.3e-06 26.2 1.8 1.7e-05 24.6 1.2 1.7 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Mu-transpos_C PF09299.6 gi|590000632|ref|YP_006544417.2| - 0.064 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Mu transposase, C-terminal HTH_5 PF01022.15 gi|397779947|ref|YP_006544420.1| - 3.6e-09 36.1 4.0 1.5e-07 30.9 0.3 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|397779947|ref|YP_006544420.1| - 9.4e-09 34.5 1.1 0.00036 19.8 0.1 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|397779947|ref|YP_006544420.1| - 2.3e-08 33.7 6.6 1.3e-07 31.2 0.4 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|397779947|ref|YP_006544420.1| - 5.4e-06 25.9 0.8 0.074 12.7 0.0 2.4 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|397779947|ref|YP_006544420.1| - 3.6e-05 23.3 0.1 0.35 10.6 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.1 gi|397779947|ref|YP_006544420.1| - 0.002 17.7 0.6 0.017 14.6 0.0 2.4 2 1 1 3 3 3 1 Domain of unknown function (DUF4423) LexA_DNA_bind PF01726.11 gi|397779947|ref|YP_006544420.1| - 0.0079 15.7 0.1 2.6 7.6 0.0 2.4 2 0 0 2 2 2 1 LexA DNA binding domain Sulfolobus_pRN PF05584.6 gi|397779947|ref|YP_006544420.1| - 0.01 15.7 1.3 0.046 13.6 0.1 2.4 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein HTH_45 PF14947.1 gi|397779947|ref|YP_006544420.1| - 0.029 14.1 0.2 5.9 6.7 0.1 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix HxlR PF01638.12 gi|397779947|ref|YP_006544420.1| - 0.03 13.9 0.8 2.7 7.6 0.0 2.4 2 0 0 2 2 2 0 HxlR-like helix-turn-helix DDRGK PF09756.4 gi|397779947|ref|YP_006544420.1| - 0.036 13.4 0.2 0.21 10.9 0.0 2.0 2 1 0 2 2 2 0 DDRGK domain CHASE3 PF05227.8 gi|397779947|ref|YP_006544420.1| - 0.046 13.4 0.7 0.1 12.2 0.1 1.8 2 0 0 2 2 2 0 CHASE3 domain HTH_11 PF08279.7 gi|397779947|ref|YP_006544420.1| - 0.05 13.2 0.4 1.2 8.8 0.1 2.7 2 0 0 2 2 2 0 HTH domain Rrf2 PF02082.15 gi|397779947|ref|YP_006544420.1| - 0.078 13.1 0.2 3.1 7.9 0.0 2.5 3 0 0 3 3 3 0 Transcriptional regulator Takusan PF04822.8 gi|397779947|ref|YP_006544420.1| - 0.39 10.5 4.3 1.5 8.6 0.1 2.7 2 1 1 3 3 3 0 Takusan IMPDH PF00478.20 gi|397779948|ref|YP_006544421.1| - 2.5e-132 441.0 7.4 2.9e-132 440.8 5.2 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|397779948|ref|YP_006544421.1| - 8.1e-33 111.9 4.5 6.3e-17 61.0 0.1 2.8 2 0 0 2 2 2 2 CBS domain FMN_dh PF01070.13 gi|397779948|ref|YP_006544421.1| - 8.3e-11 41.3 2.5 9.7e-09 34.5 2.0 2.7 2 1 0 2 2 2 1 FMN-dependent dehydrogenase NMO PF03060.10 gi|397779948|ref|YP_006544421.1| - 5.1e-08 32.4 15.0 3.8e-06 26.2 2.4 3.4 1 1 0 2 2 2 2 Nitronate monooxygenase His_biosynth PF00977.16 gi|397779948|ref|YP_006544421.1| - 3.1e-06 26.6 3.0 3.1e-06 26.6 2.1 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|397779948|ref|YP_006544421.1| - 0.00024 20.1 5.7 0.00044 19.2 4.0 1.5 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.9 gi|397779948|ref|YP_006544421.1| - 0.00086 18.4 1.6 0.00086 18.4 1.1 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|397779948|ref|YP_006544421.1| - 0.0012 17.7 0.5 0.0027 16.5 0.1 1.8 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) DHO_dh PF01180.16 gi|397779948|ref|YP_006544421.1| - 0.0087 15.0 2.1 0.018 14.0 1.5 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Ribul_P_3_epim PF00834.14 gi|397779948|ref|YP_006544421.1| - 0.019 14.0 1.2 0.064 12.3 0.2 2.1 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Beta_elim_lyase PF01212.16 gi|397779948|ref|YP_006544421.1| - 0.045 12.8 0.8 0.093 11.8 0.6 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase PcrB PF01884.12 gi|397779948|ref|YP_006544421.1| - 0.11 11.6 7.5 0.27 10.4 0.8 3.1 3 1 0 3 3 3 0 PcrB family DUF556 PF04476.8 gi|397779949|ref|YP_006544422.1| - 4.9e-78 261.5 1.2 5.4e-78 261.4 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) Ground-like PF04155.13 gi|397779949|ref|YP_006544422.1| - 0.046 14.0 0.0 0.087 13.1 0.0 1.4 1 0 0 1 1 1 0 Ground-like domain AAA_PrkA PF08298.6 gi|397779949|ref|YP_006544422.1| - 0.068 11.8 0.0 0.083 11.5 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain His_biosynth PF00977.16 gi|397779950|ref|YP_006544423.1| - 2.9e-17 62.7 0.0 3.8e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Histidine biosynthesis protein Thymidylate_kin PF02223.12 gi|397779951|ref|YP_006544424.1| - 3.1e-39 134.2 0.0 3.5e-39 134.0 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|397779951|ref|YP_006544424.1| - 0.00019 21.7 0.0 0.00082 19.6 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|397779951|ref|YP_006544424.1| - 0.00047 20.9 0.2 0.0019 18.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|397779951|ref|YP_006544424.1| - 0.00056 19.8 0.0 0.012 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|397779951|ref|YP_006544424.1| - 0.0031 17.4 0.0 0.0051 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|397779951|ref|YP_006544424.1| - 0.032 13.8 0.0 0.071 12.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|397779951|ref|YP_006544424.1| - 0.12 11.7 0.1 0.35 10.2 0.0 1.8 2 1 0 2 2 2 0 AAA domain tRNA-synt_1 PF00133.17 gi|397779952|ref|YP_006544425.1| - 1.4e-127 426.2 0.0 7.9e-127 423.7 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|397779952|ref|YP_006544425.1| - 1.1e-36 125.8 0.0 2e-36 125.0 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|397779952|ref|YP_006544425.1| - 1.8e-24 86.1 0.2 4.7e-14 51.8 0.0 3.2 3 1 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|397779952|ref|YP_006544425.1| - 0.00017 20.9 0.0 0.00053 19.3 0.0 1.7 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|397779952|ref|YP_006544425.1| - 0.0044 16.1 0.0 1.5 7.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|397779952|ref|YP_006544425.1| - 0.0088 15.8 1.2 0.73 9.6 0.1 3.2 3 0 0 3 3 3 1 Double zinc ribbon DUF92 PF01940.11 gi|397779953|ref|YP_006544426.1| - 5.6e-66 221.9 22.9 5.6e-66 221.9 15.9 2.5 3 0 0 3 3 3 1 Integral membrane protein DUF92 PK_C PF02887.11 gi|397779955|ref|YP_006544428.1| - 3e-22 78.3 3.0 3.9e-22 78.0 2.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain AP_endonuc_2 PF01261.19 gi|397779955|ref|YP_006544428.1| - 0.014 14.6 0.7 0.16 11.2 0.5 2.0 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel MMR_HSR1_C PF08438.5 gi|397779956|ref|YP_006544429.1| - 1.6e-29 102.3 0.0 4.5e-29 100.8 0.0 1.8 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|397779956|ref|YP_006544429.1| - 4.2e-16 58.9 0.0 1.1e-15 57.6 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|397779956|ref|YP_006544429.1| - 7.2e-13 48.1 0.0 1.9e-12 46.8 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|397779956|ref|YP_006544429.1| - 3.6e-09 36.0 0.1 4.5e-08 32.5 0.0 2.5 3 0 0 3 3 3 1 Ferrous iron transport protein B OGFr_N PF04664.8 gi|397779957|ref|YP_006544430.1| - 0.056 12.7 0.0 0.062 12.6 0.0 1.1 1 0 0 1 1 1 0 Opioid growth factor receptor (OGFr) conserved region MatE PF01554.13 gi|397779958|ref|YP_006544431.1| - 3e-64 215.5 37.5 3.3e-32 111.3 10.1 2.6 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|397779958|ref|YP_006544431.1| - 6.6e-11 42.2 31.9 2.3e-07 30.7 12.2 4.0 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain NfeD PF01957.13 gi|397779959|ref|YP_006544432.1| - 0.0094 16.0 4.0 0.3 11.2 2.8 2.1 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding Gag_p24 PF00607.15 gi|397779959|ref|YP_006544432.1| - 0.062 12.8 0.0 0.097 12.2 0.0 1.3 1 0 0 1 1 1 0 gag gene protein p24 (core nucleocapsid protein) 7TMR-DISM_7TM PF07695.6 gi|397779959|ref|YP_006544432.1| - 0.15 11.6 5.2 0.22 11.1 3.6 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF869 PF05911.6 gi|397779960|ref|YP_006544433.1| - 0.011 13.9 7.8 0.12 10.5 1.1 2.1 2 0 0 2 2 2 0 Plant protein of unknown function (DUF869) APG17 PF04108.7 gi|397779960|ref|YP_006544433.1| - 0.031 13.0 1.7 0.05 12.3 0.2 2.0 2 0 0 2 2 2 0 Autophagy protein Apg17 Reo_sigmaC PF04582.7 gi|397779960|ref|YP_006544433.1| - 0.034 13.3 0.0 0.074 12.2 0.0 1.7 1 0 0 1 1 1 0 Reovirus sigma C capsid protein OmpH PF03938.9 gi|397779960|ref|YP_006544433.1| - 0.39 10.6 14.4 0.28 11.1 3.2 3.0 2 1 0 2 2 2 0 Outer membrane protein (OmpH-like) APG6 PF04111.7 gi|397779960|ref|YP_006544433.1| - 0.4 9.6 16.1 0.054 12.5 3.6 2.2 2 0 0 2 2 2 0 Autophagy protein Apg6 AAA_13 PF13166.1 gi|397779960|ref|YP_006544433.1| - 0.42 9.0 5.3 0.058 11.8 0.2 1.9 2 0 0 2 2 2 0 AAA domain ADIP PF11559.3 gi|397779960|ref|YP_006544433.1| - 0.96 9.3 10.6 2.7 7.8 1.7 2.6 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Spc7 PF08317.6 gi|397779960|ref|YP_006544433.1| - 0.97 8.0 10.9 1.2 7.7 0.1 2.8 2 1 1 3 3 3 0 Spc7 kinetochore protein IncA PF04156.9 gi|397779960|ref|YP_006544433.1| - 1.2 8.6 18.8 0.36 10.4 5.1 3.0 2 1 0 2 2 2 0 IncA protein GAS PF13851.1 gi|397779960|ref|YP_006544433.1| - 1.4 8.0 11.4 0.12 11.6 1.4 2.5 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF1978 PF09321.5 gi|397779960|ref|YP_006544433.1| - 1.4 8.2 9.9 0.047 13.1 2.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1978) IFT57 PF10498.4 gi|397779960|ref|YP_006544433.1| - 1.8 7.2 6.9 0.058 12.1 0.4 1.6 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 CorA PF01544.13 gi|397779960|ref|YP_006544433.1| - 1.9 7.4 7.2 2.5 7.0 2.1 2.5 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein DUF972 PF06156.8 gi|397779960|ref|YP_006544433.1| - 2.9 8.2 10.4 6.7 7.1 0.6 3.3 2 1 0 2 2 2 0 Protein of unknown function (DUF972) Acetyltransf_11 PF13720.1 gi|397779960|ref|YP_006544433.1| - 3.5 7.9 5.6 2.5 8.3 0.2 2.9 2 1 0 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DUF342 PF03961.8 gi|397779960|ref|YP_006544433.1| - 4.6 5.5 8.3 1.1 7.6 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF342) TPR_MLP1_2 PF07926.7 gi|397779960|ref|YP_006544433.1| - 8.6 6.1 19.2 0.22 11.2 4.1 2.6 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein MscS_porin PF12795.2 gi|397779960|ref|YP_006544433.1| - 9.1 5.5 25.2 8.5 5.6 0.8 3.1 2 1 1 3 3 3 0 Mechanosensitive ion channel porin domain CTP_transf_2 PF01467.21 gi|397779961|ref|YP_006544434.1| - 1.8e-16 60.6 0.0 2.3e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase HIGH_NTase1 PF05636.6 gi|397779961|ref|YP_006544434.1| - 0.01 14.8 0.0 0.46 9.4 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase AIRC PF00731.15 gi|397779962|ref|YP_006544435.1| - 1.2e-20 73.3 3.0 2e-20 72.5 2.1 1.3 1 0 0 1 1 1 1 AIR carboxylase DUF2142 PF09913.4 gi|397779963|ref|YP_006544436.1| - 0.039 12.6 0.1 0.073 11.7 0.0 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2142) DUF4131 PF13567.1 gi|397779963|ref|YP_006544436.1| - 2.8 7.3 7.9 7.8 5.8 5.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) tRNA-synt_His PF13393.1 gi|397779964|ref|YP_006544437.1| - 4.3e-61 206.6 0.0 7.2e-61 205.9 0.0 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|397779964|ref|YP_006544437.1| - 4.4e-23 81.7 0.0 7e-23 81.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|397779964|ref|YP_006544437.1| - 3.4e-14 52.5 0.2 6.9e-14 51.5 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|397779964|ref|YP_006544437.1| - 0.23 10.1 2.3 12 4.5 0.1 2.8 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) Topo-VIb_trans PF09239.6 gi|397779965|ref|YP_006544438.1| - 3.5e-66 221.6 0.0 9.3e-66 220.2 0.0 1.7 2 0 0 2 2 2 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|397779965|ref|YP_006544438.1| - 5.1e-12 45.5 0.0 1e-11 44.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|397779965|ref|YP_006544438.1| - 3.3e-09 36.5 0.0 6.5e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|397779965|ref|YP_006544438.1| - 0.0034 16.0 0.3 0.012 14.2 0.0 2.0 3 0 0 3 3 3 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_5 PF14501.1 gi|397779965|ref|YP_006544438.1| - 0.028 14.1 0.0 0.51 10.0 0.0 2.4 2 0 0 2 2 2 0 GHKL domain Med11 PF10280.4 gi|397779965|ref|YP_006544438.1| - 0.066 13.2 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Mediator complex protein TP6A_N PF04406.9 gi|590000633|ref|YP_006544439.2| - 2.8e-20 71.7 0.2 4.5e-20 71.0 0.1 1.3 1 0 0 1 1 1 1 Type IIB DNA topoisomerase PRiA4_ORF3 PF07929.6 gi|397779968|ref|YP_006544441.1| - 0.0017 17.8 0.0 0.0029 17.0 0.0 1.3 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein Prim_Zn_Ribbon PF08273.7 gi|397779968|ref|YP_006544441.1| - 0.031 14.3 0.3 0.067 13.2 0.2 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF4143 PF13635.1 gi|397779970|ref|YP_006544443.1| - 0.039 14.1 0.0 0.058 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) Mrr_cat PF04471.7 gi|397779970|ref|YP_006544443.1| - 0.04 13.7 0.0 0.046 13.5 0.0 1.1 1 0 0 1 1 1 0 Restriction endonuclease EFF-AFF PF14884.1 gi|397779970|ref|YP_006544443.1| - 0.13 10.2 0.0 0.14 10.1 0.0 1.0 1 0 0 1 1 1 0 Type I membrane glycoproteins cell-cell fusogen HxlR PF01638.12 gi|397779971|ref|YP_006544444.1| - 4.7e-24 83.8 0.6 5.9e-24 83.5 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF4423 PF14394.1 gi|397779971|ref|YP_006544444.1| - 2.5e-05 23.8 0.0 3e-05 23.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_20 PF12840.2 gi|397779971|ref|YP_006544444.1| - 0.00041 20.0 0.0 0.00079 19.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2513 PF10711.4 gi|397779971|ref|YP_006544444.1| - 0.001 19.0 0.0 0.0014 18.6 0.0 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_34 PF13601.1 gi|397779971|ref|YP_006544444.1| - 0.0017 18.3 0.1 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|397779971|ref|YP_006544444.1| - 0.0017 18.0 0.1 0.0024 17.5 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|397779971|ref|YP_006544444.1| - 0.005 16.1 0.1 0.0076 15.6 0.1 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF911 PF06023.7 gi|397779971|ref|YP_006544444.1| - 0.016 14.4 0.0 0.017 14.3 0.0 1.1 1 0 0 1 1 1 0 Archaeal protein of unknown function (DUF911) MarR_2 PF12802.2 gi|397779971|ref|YP_006544444.1| - 0.052 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.5 gi|397779971|ref|YP_006544444.1| - 0.056 13.1 0.1 0.11 12.2 0.0 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|397779971|ref|YP_006544444.1| - 0.1 12.4 0.1 0.23 11.3 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix Prismane PF03063.15 gi|397779972|ref|YP_006544445.1| - 9e-164 545.6 0.0 1e-163 545.4 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family DUF2204 PF09970.4 gi|397779973|ref|YP_006544446.1| - 0.011 15.1 0.2 0.019 14.4 0.1 1.4 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) UPF0150 PF03681.10 gi|397779975|ref|YP_006544448.1| - 4.4e-16 58.2 1.2 5.7e-16 57.8 0.8 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Cyclase PF04199.8 gi|397779976|ref|YP_006544449.1| - 4.7e-19 68.7 0.0 5.7e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase HAD_2 PF13419.1 gi|397779977|ref|YP_006544450.1| - 4.5e-17 62.8 0.0 9.5e-17 61.7 0.0 1.5 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|397779977|ref|YP_006544450.1| - 1.6e-06 28.7 0.0 1.6e-05 25.3 0.0 2.3 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|397779977|ref|YP_006544450.1| - 1.3e-05 25.4 0.0 2e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|397779977|ref|YP_006544450.1| - 0.00072 19.2 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.7 gi|397779977|ref|YP_006544450.1| - 0.02 14.4 0.0 0.028 14.0 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Methyltransf_23 PF13489.1 gi|397779978|ref|YP_006544451.1| - 0.00094 18.9 0.0 0.0025 17.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|397779978|ref|YP_006544451.1| - 0.0075 16.7 0.0 0.016 15.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|397779978|ref|YP_006544451.1| - 0.03 13.7 0.2 0.093 12.0 0.2 1.7 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW RmlD_sub_bind PF04321.12 gi|397779979|ref|YP_006544452.1| - 6.5e-32 110.5 0.0 1.1e-31 109.8 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|397779979|ref|YP_006544452.1| - 4.9e-13 49.0 0.0 7.2e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|397779979|ref|YP_006544452.1| - 2.2e-05 23.5 0.1 0.001 18.0 0.0 2.1 1 1 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|397779979|ref|YP_006544452.1| - 0.042 12.7 0.8 0.094 11.5 0.5 1.6 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein Semialdhyde_dh PF01118.19 gi|397779979|ref|YP_006544452.1| - 0.076 13.3 0.1 0.23 11.7 0.0 2.0 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.10 gi|397779980|ref|YP_006544453.1| - 2.6e-87 292.4 0.0 3e-87 292.2 0.0 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.16 gi|397779980|ref|YP_006544453.1| - 4e-14 52.6 0.0 6.6e-13 48.6 0.0 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|397779980|ref|YP_006544453.1| - 1.7e-10 40.0 0.0 2.9e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|397779980|ref|YP_006544453.1| - 1.7e-09 36.9 0.0 1.4e-07 30.7 0.0 2.8 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|397779980|ref|YP_006544453.1| - 3.7e-09 35.8 0.0 5.1e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|397779980|ref|YP_006544453.1| - 0.00026 20.9 0.0 0.00065 19.6 0.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|397779980|ref|YP_006544453.1| - 0.00087 18.6 0.0 0.0015 17.8 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|397779980|ref|YP_006544453.1| - 0.0015 18.2 0.0 0.0025 17.5 0.0 1.5 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|397779980|ref|YP_006544453.1| - 0.0016 18.4 0.1 0.23 11.4 0.0 2.4 1 1 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|397779980|ref|YP_006544453.1| - 0.016 15.5 0.0 0.05 14.0 0.0 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Epimerase_2 PF02350.14 gi|397779981|ref|YP_006544454.1| - 1.2e-93 313.6 0.0 1.4e-93 313.4 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.1 gi|397779981|ref|YP_006544454.1| - 0.076 13.1 0.0 1.7 8.7 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|397779982|ref|YP_006544455.1| - 3e-16 59.7 0.0 6.6e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|397779982|ref|YP_006544455.1| - 9.2e-09 34.9 0.0 1.6e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|397779982|ref|YP_006544455.1| - 1.5e-05 25.1 1.5 7.2e-05 22.9 0.6 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|397779982|ref|YP_006544455.1| - 0.001 19.3 0.0 0.0022 18.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DEDD_Tnp_IS110 PF01548.12 gi|397779983|ref|YP_006544456.1| - 1.2e-31 109.3 0.0 1.9e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 Transposase Transposase_20 PF02371.11 gi|397779983|ref|YP_006544456.1| - 5.6e-24 84.0 0.0 1.3e-23 82.9 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family WI12 PF07107.6 gi|397779983|ref|YP_006544456.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Wound-induced protein WI12 Methyltransf_23 PF13489.1 gi|397779984|ref|YP_006544457.1| - 3.8e-15 55.9 0.1 4.8e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397779984|ref|YP_006544457.1| - 2.2e-09 37.6 0.0 4.2e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397779984|ref|YP_006544457.1| - 4.1e-08 32.9 0.0 5.1e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|397779984|ref|YP_006544457.1| - 3.5e-06 27.3 0.0 5.6e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397779984|ref|YP_006544457.1| - 3.5e-05 24.3 0.0 5.3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|397779984|ref|YP_006544457.1| - 7.3e-05 23.0 0.0 0.00014 22.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|397779984|ref|YP_006544457.1| - 0.00062 19.1 0.0 0.00094 18.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|397779984|ref|YP_006544457.1| - 0.015 15.3 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.6 gi|397779984|ref|YP_006544457.1| - 0.026 13.9 0.0 0.046 13.1 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) Glycos_transf_1 PF00534.15 gi|397779985|ref|YP_006544458.1| - 1.1e-42 145.3 0.0 2.2e-42 144.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397779985|ref|YP_006544458.1| - 1e-19 70.9 0.0 1.9e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|397779985|ref|YP_006544458.1| - 2.4e-09 37.3 0.0 5.2e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|397779985|ref|YP_006544458.1| - 4.8e-07 29.6 0.2 1.9e-06 27.7 0.1 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|397779985|ref|YP_006544458.1| - 4.4e-06 26.9 0.0 8e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|397779985|ref|YP_006544458.1| - 0.00075 19.0 0.1 0.0012 18.4 0.1 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_transf_4 PF13439.1 gi|397779985|ref|YP_006544458.1| - 0.0054 16.4 0.0 0.0094 15.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|397779986|ref|YP_006544459.1| - 6.6e-21 74.4 0.0 1e-20 73.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|397779986|ref|YP_006544459.1| - 5.1e-19 68.9 0.2 8.9e-19 68.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|397779986|ref|YP_006544459.1| - 5.2e-19 68.7 0.0 1e-18 67.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|397779986|ref|YP_006544459.1| - 6.7e-13 48.7 0.0 1.4e-12 47.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|397779986|ref|YP_006544459.1| - 1.3e-09 38.0 0.0 2e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|397779986|ref|YP_006544459.1| - 1.5e-09 37.7 0.0 2.6e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|397779986|ref|YP_006544459.1| - 0.0015 18.0 0.0 0.0059 16.1 0.0 1.8 1 1 1 2 2 2 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|397779987|ref|YP_006544460.1| - 2.4e-23 82.4 0.0 2.3e-22 79.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397779987|ref|YP_006544460.1| - 1.9e-15 57.2 0.1 1.2e-14 54.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|397779987|ref|YP_006544460.1| - 1e-05 25.3 0.1 2.2e-05 24.2 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|397779987|ref|YP_006544460.1| - 0.022 15.0 0.0 0.048 13.9 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|397779987|ref|YP_006544460.1| - 0.028 14.5 0.0 0.051 13.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Epimerase_2 PF02350.14 gi|397779988|ref|YP_006544461.1| - 3.7e-113 377.8 0.0 4.4e-113 377.5 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|397779988|ref|YP_006544461.1| - 0.0056 15.5 0.0 0.0076 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) UDPG_MGDP_dh_N PF03721.9 gi|397779989|ref|YP_006544462.1| - 2.3e-33 115.1 0.0 3.6e-33 114.5 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|397779989|ref|YP_006544462.1| - 7.3e-22 77.5 0.0 2e-21 76.1 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|397779989|ref|YP_006544462.1| - 1e-17 64.1 0.0 1.9e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain Semialdhyde_dh PF01118.19 gi|397779989|ref|YP_006544462.1| - 0.0046 17.2 0.0 0.72 10.1 0.0 3.0 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|397779990|ref|YP_006544463.1| - 1.2e-19 70.9 0.0 2.1e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|397779990|ref|YP_006544463.1| - 1.8e-07 31.1 0.0 2.8e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|397779990|ref|YP_006544463.1| - 0.00017 21.9 0.0 0.00036 20.9 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|397779990|ref|YP_006544463.1| - 0.00021 20.4 0.0 0.0004 19.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|397779990|ref|YP_006544463.1| - 0.014 15.6 0.0 0.029 14.6 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|397779990|ref|YP_006544463.1| - 0.034 14.6 0.0 0.066 13.7 0.0 1.4 1 0 0 1 1 1 0 CoA binding domain 3HCDH_N PF02737.13 gi|397779990|ref|YP_006544463.1| - 0.098 12.3 0.3 0.58 9.7 0.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|397779990|ref|YP_006544463.1| - 0.11 11.2 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Polysacc_synt_C PF14667.1 gi|397779991|ref|YP_006544464.1| - 4.1e-25 88.2 18.7 4.1e-25 88.2 13.0 4.3 3 1 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|397779991|ref|YP_006544464.1| - 7.7e-21 74.5 27.1 7.7e-21 74.5 18.8 3.1 2 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|397779991|ref|YP_006544464.1| - 1.2e-14 54.3 32.0 1.2e-14 54.3 22.2 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|397779991|ref|YP_006544464.1| - 6.8e-12 44.5 37.8 1.2e-11 43.7 26.2 1.4 1 1 0 1 1 1 1 MviN-like protein DUF2830 PF11125.3 gi|397779991|ref|YP_006544464.1| - 0.048 13.3 0.0 0.17 11.6 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2830) Acetyltransf_7 PF13508.1 gi|397779992|ref|YP_006544465.1| - 6.2e-13 48.7 0.0 9.2e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|397779992|ref|YP_006544465.1| - 7.3e-07 29.1 0.0 1.2e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|397779992|ref|YP_006544465.1| - 5.7e-06 26.2 0.0 4.3e-05 23.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|397779992|ref|YP_006544465.1| - 0.00016 21.7 0.0 0.00023 21.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|397779992|ref|YP_006544465.1| - 0.0028 17.3 0.0 0.0076 15.9 0.0 1.7 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|397779992|ref|YP_006544465.1| - 0.015 15.1 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Glycos_transf_2 PF00535.21 gi|397779993|ref|YP_006544466.1| - 2.9e-19 69.3 0.0 4.3e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|397779993|ref|YP_006544466.1| - 4.1e-08 33.3 0.0 1.5e-07 31.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|397779993|ref|YP_006544466.1| - 3.1e-05 23.2 0.0 4.5e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|397779993|ref|YP_006544466.1| - 0.00069 19.8 0.1 0.0036 17.5 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 2 HDOD PF08668.7 gi|590000634|ref|YP_006544467.2| - 0.016 14.5 0.0 1.7 7.8 0.0 2.4 2 1 1 3 3 3 0 HDOD domain DUF2150 PF09920.4 gi|397779995|ref|YP_006544468.1| - 1.3e-66 223.7 1.9 1.6e-66 223.5 1.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) RNase_PH_C PF03725.10 gi|397779995|ref|YP_006544468.1| - 0.036 14.0 0.5 0.072 13.0 0.3 1.6 1 1 0 1 1 1 0 3' exoribonuclease family, domain 2 TRADD_N PF09034.5 gi|397779995|ref|YP_006544468.1| - 0.15 12.0 0.4 2.1 8.3 0.0 2.2 2 0 0 2 2 2 0 TRADD, N-terminal domain Asn_synthase PF00733.16 gi|397779996|ref|YP_006544469.1| - 1.2e-12 47.9 0.0 1.7e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|397779996|ref|YP_006544469.1| - 5.2e-07 29.1 0.0 2.9e-06 26.7 0.0 2.1 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|397779996|ref|YP_006544469.1| - 0.00096 18.6 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 PP-loop family ThiI PF02568.9 gi|397779996|ref|YP_006544469.1| - 0.0068 15.8 0.0 0.017 14.6 0.0 1.8 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|397779996|ref|YP_006544469.1| - 0.016 14.9 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.11 gi|397779996|ref|YP_006544469.1| - 0.092 11.2 0.0 0.13 10.7 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase NAD_synthase PF02540.12 gi|397779996|ref|YP_006544469.1| - 0.11 11.3 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 NAD synthase ThiI PF02568.9 gi|397779997|ref|YP_006544470.1| - 1.5e-58 197.5 0.0 2.1e-58 197.0 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|397779997|ref|YP_006544470.1| - 3.8e-15 56.0 0.0 6.5e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|397779997|ref|YP_006544470.1| - 0.043 13.0 0.0 2.6 7.2 0.0 2.6 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|397779997|ref|YP_006544470.1| - 0.1 11.0 0.1 0.15 10.5 0.1 1.2 1 0 0 1 1 1 0 tRNA methyl transferase Aminotran_5 PF00266.14 gi|397779998|ref|YP_006544471.1| - 3e-23 82.1 0.2 4.7e-23 81.5 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class-V SLA_LP_auto_ag PF05889.8 gi|397779998|ref|YP_006544471.1| - 1.5e-22 79.6 0.0 2.1e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) DegT_DnrJ_EryC1 PF01041.12 gi|397779998|ref|YP_006544471.1| - 2.3e-06 26.9 1.1 3.5e-06 26.3 0.8 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|397779998|ref|YP_006544471.1| - 3.7e-06 26.2 0.0 6.5e-06 25.4 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|397779998|ref|YP_006544471.1| - 7.7e-05 21.8 0.0 0.00013 21.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|397779998|ref|YP_006544471.1| - 0.0002 19.8 0.0 0.00036 18.9 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|397779998|ref|YP_006544471.1| - 0.0016 17.0 0.0 0.0036 15.8 0.0 1.4 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Metallophos_2 PF12850.2 gi|397780000|ref|YP_006544473.1| - 4.5e-14 52.5 0.6 7e-14 51.9 0.4 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|397780000|ref|YP_006544473.1| - 1.8e-08 34.0 2.6 1.1e-07 31.4 1.8 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase SMC_N PF02463.14 gi|397780001|ref|YP_006544474.1| - 3.8e-19 68.7 0.0 1.1e-18 67.2 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|397780001|ref|YP_006544474.1| - 5.3e-17 62.8 0.1 5.3e-17 62.8 0.1 4.0 2 2 0 2 2 2 1 AAA domain AAA_27 PF13514.1 gi|397780001|ref|YP_006544474.1| - 5.6e-07 27.6 6.7 5.6e-07 27.6 4.7 5.9 2 1 3 6 6 6 3 AAA domain SbcCD_C PF13558.1 gi|397780001|ref|YP_006544474.1| - 4.2e-06 26.5 0.1 1.7e-05 24.6 0.0 2.1 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|397780001|ref|YP_006544474.1| - 9.2e-06 24.9 0.1 2.8e-05 23.3 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|397780001|ref|YP_006544474.1| - 9.9e-06 24.9 0.1 1.9e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|397780001|ref|YP_006544474.1| - 0.00021 21.6 1.0 0.014 15.6 0.6 3.4 2 1 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|397780001|ref|YP_006544474.1| - 0.0006 19.8 1.7 0.0043 17.0 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|397780001|ref|YP_006544474.1| - 0.0019 16.7 0.4 0.0019 16.7 0.3 3.8 2 1 1 4 4 4 1 AAA domain DP PF08781.5 gi|397780001|ref|YP_006544474.1| - 0.69 9.5 5.0 23 4.6 0.3 3.7 3 0 0 3 3 3 0 Transcription factor DP NurA PF09376.5 gi|397780002|ref|YP_006544475.1| - 1.1e-08 34.8 0.0 6.4e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 NurA domain DUF2102 PF09875.4 gi|397780002|ref|YP_006544475.1| - 0.13 11.7 0.1 0.25 10.8 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2102) DUF87 PF01935.12 gi|397780003|ref|YP_006544476.1| - 4.4e-27 95.3 0.0 6.2e-27 94.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|397780003|ref|YP_006544476.1| - 3.9e-20 72.4 1.7 2.2e-18 66.7 1.2 2.2 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|397780003|ref|YP_006544476.1| - 1.9e-05 23.4 0.1 0.00042 19.0 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|397780003|ref|YP_006544476.1| - 0.0022 16.4 0.4 0.0037 15.6 0.0 1.4 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|397780003|ref|YP_006544476.1| - 0.0026 17.2 0.0 0.0054 16.2 0.0 1.5 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|397780003|ref|YP_006544476.1| - 0.016 14.6 0.5 0.045 13.2 0.1 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family tRNA_anti-codon PF01336.20 gi|397780004|ref|YP_006544477.1| - 3.5e-05 23.5 0.4 0.00042 20.1 0.5 2.3 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain Tom22 PF04281.8 gi|397780004|ref|YP_006544477.1| - 0.029 13.8 0.1 0.041 13.4 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 tRNA_anti-like PF12869.2 gi|397780004|ref|YP_006544477.1| - 0.053 13.0 0.4 0.23 10.9 0.3 1.9 1 1 0 1 1 1 0 tRNA_anti-like Form_Nir_trans PF01226.12 gi|397780005|ref|YP_006544478.1| - 6.2e-78 261.1 33.2 7e-78 260.9 23.0 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter FrhB_FdhB_C PF04432.8 gi|397780007|ref|YP_006544480.1| - 1.8e-39 134.7 0.1 3.6e-39 133.7 0.1 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|397780007|ref|YP_006544480.1| - 4.5e-22 77.7 0.0 9.8e-22 76.6 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|397780007|ref|YP_006544480.1| - 3.4e-08 33.3 14.5 6.9e-08 32.4 9.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|397780007|ref|YP_006544480.1| - 3.6e-05 23.1 12.6 0.00015 21.1 2.0 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|397780007|ref|YP_006544480.1| - 0.00068 20.0 0.8 0.00068 20.0 0.6 3.0 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397780007|ref|YP_006544480.1| - 0.0014 18.9 17.2 0.0014 18.9 11.9 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397780007|ref|YP_006544480.1| - 0.0015 18.2 0.1 0.0015 18.2 0.1 3.1 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397780007|ref|YP_006544480.1| - 0.0017 18.1 11.5 0.0071 16.2 1.6 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|397780007|ref|YP_006544480.1| - 0.0095 16.1 21.9 0.042 14.1 13.4 3.0 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|397780007|ref|YP_006544480.1| - 0.015 14.9 10.2 0.26 10.9 0.4 2.8 3 0 0 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|397780007|ref|YP_006544480.1| - 0.033 14.0 1.4 0.033 14.0 1.0 3.9 4 1 1 5 5 5 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|397780007|ref|YP_006544480.1| - 0.043 14.1 21.0 0.044 14.1 11.9 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397780007|ref|YP_006544480.1| - 0.079 12.8 23.5 0.13 12.1 13.9 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|397780007|ref|YP_006544480.1| - 0.99 9.8 16.5 1.8 8.9 1.6 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|397780007|ref|YP_006544480.1| - 3.8 8.1 13.8 2.5 8.7 0.4 3.0 3 0 0 3 3 2 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|397780008|ref|YP_006544481.1| - 7.2e-94 314.9 0.0 8.6e-94 314.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|397780008|ref|YP_006544481.1| - 4e-33 113.5 0.0 8.6e-33 112.4 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|397780008|ref|YP_006544481.1| - 8.5e-19 67.1 0.5 2.3e-18 65.7 0.3 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Helicase_C_2 PF13307.1 gi|397780010|ref|YP_006544483.1| - 4.5e-30 104.7 0.0 1.3e-29 103.2 0.0 1.8 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|397780010|ref|YP_006544483.1| - 2.9e-16 59.3 0.1 6.9e-12 45.1 0.0 2.5 2 1 0 2 2 2 2 DEAD_2 ResIII PF04851.10 gi|397780010|ref|YP_006544483.1| - 0.00047 20.0 0.1 0.052 13.3 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_16 PF13191.1 gi|397780010|ref|YP_006544483.1| - 0.0044 17.0 0.5 0.15 12.0 0.0 2.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|397780010|ref|YP_006544483.1| - 0.0078 16.3 0.4 3.9 7.6 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|397780010|ref|YP_006544483.1| - 0.011 15.4 0.6 0.041 13.6 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain DEAD PF00270.24 gi|397780010|ref|YP_006544483.1| - 0.014 14.8 0.2 0.34 10.3 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase DNA_binding_1 PF01035.15 gi|397780011|ref|YP_006544484.1| - 1.2e-27 95.4 0.0 1.8e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4_2 PF08281.7 gi|397780011|ref|YP_006544484.1| - 0.11 11.9 0.8 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 NifZ PF04319.8 gi|397780011|ref|YP_006544484.1| - 0.14 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 NifZ domain ApbA_C PF08546.6 gi|397780012|ref|YP_006544485.1| - 1.5e-35 121.9 0.0 2.3e-35 121.3 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|397780012|ref|YP_006544485.1| - 2.5e-26 91.9 0.0 6.9e-26 90.4 0.0 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|397780012|ref|YP_006544485.1| - 5.8e-06 26.1 0.0 1.2e-05 25.1 0.0 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|397780012|ref|YP_006544485.1| - 0.0049 17.2 0.1 0.013 15.8 0.1 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|397780012|ref|YP_006544485.1| - 0.017 15.4 0.3 0.095 13.1 0.2 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|397780012|ref|YP_006544485.1| - 0.11 12.4 0.2 0.22 11.5 0.2 1.6 1 1 0 1 1 1 0 TrkA-N domain NAD_binding_7 PF13241.1 gi|397780012|ref|YP_006544485.1| - 0.12 12.6 0.1 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding NTP_transf_3 PF12804.2 gi|397780013|ref|YP_006544486.1| - 4.6e-30 104.8 0.1 5.7e-30 104.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|397780013|ref|YP_006544486.1| - 0.00051 19.6 0.0 0.0007 19.1 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|397780013|ref|YP_006544486.1| - 0.0054 16.4 0.0 0.0079 15.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 CofC PF01983.11 gi|397780013|ref|YP_006544486.1| - 0.013 14.4 0.0 0.019 13.9 0.0 1.3 1 1 0 1 1 1 0 Guanylyl transferase CofC like PQQ_2 PF13360.1 gi|397780014|ref|YP_006544487.1| - 2.5e-15 56.6 5.3 8.1e-12 45.0 2.4 2.3 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|397780014|ref|YP_006544487.1| - 3.1e-13 49.5 21.9 0.1 12.9 0.5 7.3 5 2 0 5 5 5 4 PQQ-like domain WD40 PF00400.27 gi|397780014|ref|YP_006544487.1| - 1.7e-10 40.3 8.4 0.15 11.9 0.1 6.3 6 0 0 6 6 6 5 WD domain, G-beta repeat PQQ PF01011.16 gi|397780014|ref|YP_006544487.1| - 0.0003 20.1 9.9 3.4 7.3 0.1 6.1 6 0 0 6 6 6 1 PQQ enzyme repeat RCC1_2 PF13540.1 gi|397780014|ref|YP_006544487.1| - 0.0049 16.4 0.3 3.6 7.3 0.0 4.0 3 0 0 3 3 3 1 Regulator of chromosome condensation (RCC1) repeat SGL PF08450.7 gi|397780014|ref|YP_006544487.1| - 0.0053 16.1 0.1 2 7.7 0.0 3.5 1 1 1 2 2 2 1 SMP-30/Gluconolaconase/LRE-like region Lipoprotein_15 PF03640.10 gi|397780014|ref|YP_006544487.1| - 0.033 13.6 2.4 0.63 9.5 0.0 3.4 4 0 0 4 4 4 0 Secreted repeat of unknown function DHODB_Fe-S_bind PF10418.4 gi|397780015|ref|YP_006544488.1| - 8.7e-14 50.7 7.8 7.2e-13 47.7 3.8 2.3 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|397780015|ref|YP_006544488.1| - 1.2e-10 41.9 0.0 1.8e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|397780015|ref|YP_006544488.1| - 8.9e-06 25.7 0.0 4.3e-05 23.5 0.0 2.0 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain DHO_dh PF01180.16 gi|397780016|ref|YP_006544489.1| - 5e-54 183.2 0.2 6.5e-54 182.8 0.1 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|397780016|ref|YP_006544489.1| - 1.4e-07 30.6 0.2 0.00057 18.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|397780016|ref|YP_006544489.1| - 8.2e-05 21.9 5.2 0.0001 21.6 0.1 2.5 3 0 0 3 3 3 1 Histidine biosynthesis protein NMO PF03060.10 gi|397780016|ref|YP_006544489.1| - 9.5e-05 21.6 1.7 9.5e-05 21.6 1.2 1.9 2 1 0 2 2 2 1 Nitronate monooxygenase Trp_syntA PF00290.15 gi|397780016|ref|YP_006544489.1| - 0.01 14.3 0.1 0.018 13.5 0.1 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain IMPDH PF00478.20 gi|397780016|ref|YP_006544489.1| - 0.011 14.7 1.3 0.018 13.9 0.9 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.7 gi|397780016|ref|YP_006544489.1| - 0.021 13.7 0.6 0.035 13.0 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Ldh_1_N PF00056.18 gi|397780017|ref|YP_006544490.1| - 1.6e-20 73.3 0.0 2.1e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|397780017|ref|YP_006544490.1| - 5.1e-15 55.6 0.0 1.5e-14 54.1 0.0 1.7 1 1 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain 2-Hacid_dh_C PF02826.14 gi|397780017|ref|YP_006544490.1| - 0.022 13.9 0.1 0.054 12.6 0.0 1.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|397780017|ref|YP_006544490.1| - 0.031 13.6 0.3 0.21 10.9 0.2 2.0 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|397780017|ref|YP_006544490.1| - 0.053 13.9 0.0 0.098 13.0 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DNA_pol_B PF00136.16 gi|397780018|ref|YP_006544491.1| - 1e-58 199.3 0.0 1.6e-58 198.6 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|397780018|ref|YP_006544491.1| - 1.4e-32 112.9 0.0 2.6e-32 111.9 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|397780018|ref|YP_006544491.1| - 0.02 14.7 0.0 0.095 12.5 0.0 2.2 2 1 0 2 2 2 0 RNase_H superfamily PilZ PF07238.9 gi|590000636|ref|YP_006544493.2| - 0.038 14.0 0.0 0.062 13.3 0.0 1.3 1 0 0 1 1 1 0 PilZ domain DUF342 PF03961.8 gi|397780021|ref|YP_006544494.1| - 0.0037 15.7 7.3 0.0055 15.1 5.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF342) DUF3529 PF12046.3 gi|397780021|ref|YP_006544494.1| - 0.069 12.1 0.6 0.11 11.5 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3529) Microvir_H PF04687.7 gi|397780021|ref|YP_006544494.1| - 1.6 7.6 5.3 2.3 7.2 3.7 1.1 1 0 0 1 1 1 0 Microvirus H protein (pilot protein) DnaJ_CXXCXGXG PF00684.14 gi|397780022|ref|YP_006544495.1| - 5.4e-06 26.3 9.1 0.00083 19.3 2.3 2.6 1 1 1 2 2 2 2 DnaJ central domain HypA PF01155.14 gi|397780022|ref|YP_006544495.1| - 0.8 9.4 2.8 0.83 9.3 0.3 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Methyltransf_18 PF12847.2 gi|590000638|ref|YP_006544496.2| - 1.9e-09 38.1 0.1 3.4e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|590000638|ref|YP_006544496.2| - 2.8e-08 33.6 0.0 4.8e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.5 gi|590000638|ref|YP_006544496.2| - 1.4e-07 30.8 0.0 1.9e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.1 gi|590000638|ref|YP_006544496.2| - 1.4e-06 28.0 0.0 2.3e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|590000638|ref|YP_006544496.2| - 2.1e-06 27.7 0.2 5.1e-06 26.4 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|590000638|ref|YP_006544496.2| - 0.0012 19.1 0.0 0.0023 18.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|590000638|ref|YP_006544496.2| - 0.0013 18.1 0.1 0.0068 15.7 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|590000638|ref|YP_006544496.2| - 0.0084 16.5 0.0 0.017 15.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|590000638|ref|YP_006544496.2| - 0.02 14.4 0.0 0.11 12.0 0.0 2.0 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Lipase_GDSL_2 PF13472.1 gi|590000638|ref|YP_006544496.2| - 0.029 14.4 0.0 0.058 13.5 0.0 1.6 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family POR PF01558.13 gi|397780024|ref|YP_006544497.1| - 9.2e-37 126.5 0.0 1.1e-36 126.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|397780025|ref|YP_006544498.1| - 2.9e-28 98.3 0.1 1.1e-27 96.5 0.0 2.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|397780025|ref|YP_006544498.1| - 3.5e-09 36.5 0.0 1.4e-08 34.5 0.0 2.0 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|397780025|ref|YP_006544498.1| - 1.7e-07 30.5 17.6 2.9e-05 23.4 3.8 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|397780025|ref|YP_006544498.1| - 3.2e-05 24.0 11.4 3.2e-05 24.0 7.9 2.2 3 0 0 3 3 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397780025|ref|YP_006544498.1| - 0.00012 21.7 11.6 0.0003 20.5 7.1 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397780025|ref|YP_006544498.1| - 0.00025 20.8 11.3 0.0047 16.7 7.8 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397780025|ref|YP_006544498.1| - 0.0007 19.8 7.1 0.099 13.0 0.5 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|397780025|ref|YP_006544498.1| - 0.00076 19.4 10.2 0.0035 17.3 7.1 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397780025|ref|YP_006544498.1| - 0.00087 19.0 3.8 0.00087 19.0 2.6 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|397780025|ref|YP_006544498.1| - 0.001 18.8 2.1 0.001 18.8 1.5 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397780025|ref|YP_006544498.1| - 0.0011 19.3 15.9 0.0026 18.1 9.0 2.9 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397780025|ref|YP_006544498.1| - 0.0012 18.9 22.9 0.0068 16.6 2.1 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|397780025|ref|YP_006544498.1| - 0.0016 19.1 8.5 0.008 16.9 1.4 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain DXP_synthase_N PF13292.1 gi|397780025|ref|YP_006544498.1| - 0.017 14.0 0.0 0.84 8.5 0.1 2.2 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_18 PF13746.1 gi|397780025|ref|YP_006544498.1| - 0.44 11.0 11.1 0.67 10.4 1.5 2.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|397780025|ref|YP_006544498.1| - 0.66 10.4 11.8 3.4 8.1 0.8 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|397780025|ref|YP_006544498.1| - 1 10.0 13.6 2.2 8.9 1.8 3.6 3 0 0 3 3 2 0 4Fe-4S single cluster domain Xan_ur_permease PF00860.15 gi|397780026|ref|YP_006544499.1| - 1.6e-34 119.0 46.5 2.1e-34 118.6 32.2 1.2 1 0 0 1 1 1 1 Permease family ABC_tran PF00005.22 gi|397780027|ref|YP_006544500.1| - 2.3e-28 99.1 0.0 3.5e-28 98.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780027|ref|YP_006544500.1| - 2.1e-12 47.6 0.0 1.2e-07 31.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|397780027|ref|YP_006544500.1| - 0.015 14.3 0.0 0.051 12.6 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|397780027|ref|YP_006544500.1| - 0.037 14.2 0.0 0.24 11.5 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|397780027|ref|YP_006544500.1| - 0.045 12.5 0.1 0.078 11.7 0.1 1.3 1 0 0 1 1 1 0 ArgK protein ABC2_membrane_4 PF12730.2 gi|397780028|ref|YP_006544501.1| - 3.9e-11 42.5 10.0 5e-11 42.2 7.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|397780028|ref|YP_006544501.1| - 1.1e-10 40.8 13.8 1.1e-10 40.8 9.6 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein CcmB PF03379.8 gi|397780028|ref|YP_006544501.1| - 2.6e-09 36.6 11.5 3.3e-09 36.2 8.0 1.1 1 0 0 1 1 1 1 CcmB protein ABC2_membrane_3 PF12698.2 gi|397780028|ref|YP_006544501.1| - 1.1e-05 24.6 6.9 1.1e-05 24.6 4.8 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein Beta-lactamase PF00144.19 gi|397780029|ref|YP_006544502.1| - 1.3e-58 198.6 0.1 1.7e-58 198.1 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.1 gi|397780029|ref|YP_006544502.1| - 0.002 17.6 0.0 0.1 12.0 0.0 2.3 2 0 0 2 2 2 2 Beta-lactamase enzyme family tRNA-synt_2b PF00587.20 gi|397780030|ref|YP_006544503.1| - 4e-38 130.7 0.0 6.1e-38 130.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|397780030|ref|YP_006544503.1| - 9.2e-23 80.3 0.8 1.5e-22 79.6 0.5 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain CALCOCO1 PF07888.6 gi|397780030|ref|YP_006544503.1| - 0.061 11.6 0.2 0.095 10.9 0.1 1.2 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF1700 PF08006.6 gi|397780031|ref|YP_006544504.1| - 0.34 10.1 2.3 0.58 9.4 1.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) ABC-3 PF00950.12 gi|397780033|ref|YP_006544506.1| - 3.4e-76 255.9 30.5 3.8e-76 255.7 21.1 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|397780033|ref|YP_006544506.1| - 1.5e-06 27.3 31.4 2.1e-06 26.8 21.8 1.3 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|397780034|ref|YP_006544507.1| - 1.7e-29 102.8 0.0 2.3e-29 102.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780034|ref|YP_006544507.1| - 5.4e-12 46.2 0.0 2e-05 24.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|397780034|ref|YP_006544507.1| - 0.00011 21.9 0.0 0.0017 18.1 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_23 PF13476.1 gi|397780034|ref|YP_006544507.1| - 0.0002 21.7 0.0 0.00031 21.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|397780034|ref|YP_006544507.1| - 0.0012 17.9 0.0 0.38 9.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|397780034|ref|YP_006544507.1| - 0.0015 17.8 0.1 0.014 14.5 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|397780034|ref|YP_006544507.1| - 0.0017 17.8 0.2 0.11 11.9 0.0 2.2 1 1 0 2 2 2 1 AAA-like domain AAA PF00004.24 gi|397780034|ref|YP_006544507.1| - 0.0035 17.5 0.3 2.4 8.3 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|397780034|ref|YP_006544507.1| - 0.0048 16.4 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|397780034|ref|YP_006544507.1| - 0.0048 16.8 0.0 0.0085 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|397780034|ref|YP_006544507.1| - 0.016 15.3 0.0 0.55 10.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|397780034|ref|YP_006544507.1| - 0.036 13.6 0.0 0.31 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|397780034|ref|YP_006544507.1| - 0.048 13.5 0.1 0.84 9.5 0.0 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|397780034|ref|YP_006544507.1| - 0.052 13.2 0.0 0.099 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|397780034|ref|YP_006544507.1| - 0.057 13.1 0.0 0.097 12.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_25 PF13481.1 gi|397780034|ref|YP_006544507.1| - 0.12 11.7 0.0 0.71 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|397780034|ref|YP_006544507.1| - 0.33 11.7 1.3 0.87 10.4 0.9 2.0 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|397780034|ref|YP_006544507.1| - 0.34 10.8 2.9 0.48 10.3 0.1 2.3 2 1 0 2 2 2 0 AAA domain TroA PF01297.12 gi|397780035|ref|YP_006544508.1| - 2e-74 250.0 0.0 2.5e-74 249.7 0.0 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family Fe_dep_repress PF01325.14 gi|590000639|ref|YP_006544509.2| - 1.2e-12 47.5 0.0 1.7e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|590000639|ref|YP_006544509.2| - 2.7e-10 39.8 0.0 4.6e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|590000639|ref|YP_006544509.2| - 8.7e-07 28.5 0.0 2.3e-06 27.1 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|590000639|ref|YP_006544509.2| - 0.00012 21.6 0.0 0.00027 20.5 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|590000639|ref|YP_006544509.2| - 0.0019 17.8 0.1 0.27 10.9 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain GntR PF00392.16 gi|590000639|ref|YP_006544509.2| - 0.0072 15.7 0.0 0.012 14.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|590000639|ref|YP_006544509.2| - 0.0076 15.7 0.0 0.017 14.6 0.0 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|590000639|ref|YP_006544509.2| - 0.012 15.7 0.0 0.024 14.7 0.0 1.5 2 0 0 2 2 2 0 Transcriptional regulator FaeA PF04703.7 gi|590000639|ref|YP_006544509.2| - 0.012 15.7 0.1 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_IclR PF09339.5 gi|590000639|ref|YP_006544509.2| - 0.028 13.9 0.0 0.049 13.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|590000639|ref|YP_006544509.2| - 0.035 13.8 0.0 0.064 13.0 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rio2_N PF09202.6 gi|590000639|ref|YP_006544509.2| - 0.057 13.4 0.0 0.2 11.7 0.0 1.8 1 1 1 2 2 2 0 Rio2, N-terminal HTH_5 PF01022.15 gi|590000639|ref|YP_006544509.2| - 0.067 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|590000639|ref|YP_006544509.2| - 0.075 13.3 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|590000639|ref|YP_006544509.2| - 0.15 11.7 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain Radical_SAM PF04055.16 gi|397780037|ref|YP_006544510.1| - 6.9e-25 88.1 0.0 1.3e-24 87.2 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.15 gi|397780037|ref|YP_006544510.1| - 8.8e-16 57.5 0.2 1.6e-15 56.7 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 DUF108 PF01958.13 gi|397780038|ref|YP_006544511.1| - 1.1e-30 105.6 0.0 2.7e-30 104.4 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|397780038|ref|YP_006544511.1| - 5e-16 59.1 0.6 8.4e-16 58.4 0.4 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|397780038|ref|YP_006544511.1| - 2.6e-05 24.7 0.3 3.9e-05 24.1 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|397780038|ref|YP_006544511.1| - 0.0021 17.9 0.6 0.0037 17.1 0.1 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_2 PF03446.10 gi|397780038|ref|YP_006544511.1| - 0.01 15.6 0.1 0.017 14.9 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|397780038|ref|YP_006544511.1| - 0.055 13.9 0.6 0.15 12.4 0.4 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NadA PF02445.11 gi|397780039|ref|YP_006544512.1| - 5.1e-103 343.9 0.0 5.7e-103 343.7 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein TPP_enzyme_M PF00205.17 gi|397780039|ref|YP_006544512.1| - 0.019 14.7 0.1 0.8 9.4 0.1 2.6 1 1 1 2 2 2 0 Thiamine pyrophosphate enzyme, central domain QRPTase_C PF01729.14 gi|397780040|ref|YP_006544513.1| - 1.7e-51 174.1 0.5 2.1e-51 173.7 0.3 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|397780040|ref|YP_006544513.1| - 3.8e-23 81.1 0.0 7.3e-23 80.2 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain HEAT_2 PF13646.1 gi|397780041|ref|YP_006544514.1| - 2.5e-49 165.4 9.3 1.9e-20 72.9 0.1 2.7 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.11 gi|397780041|ref|YP_006544514.1| - 2.4e-27 92.5 13.4 6.8e-07 29.1 0.7 5.2 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|397780041|ref|YP_006544514.1| - 1e-23 81.1 0.8 5.3e-05 22.9 0.0 5.1 5 0 0 5 5 5 4 HEAT repeat HEAT_EZ PF13513.1 gi|397780041|ref|YP_006544514.1| - 3e-16 59.3 10.0 0.00022 21.5 0.5 4.4 3 2 1 4 4 4 4 HEAT-like repeat Arm PF00514.18 gi|397780041|ref|YP_006544514.1| - 2.7e-11 42.8 0.1 5.6e-05 22.8 0.0 4.2 3 1 1 4 4 4 3 Armadillo/beta-catenin-like repeat DUF2019 PF09450.5 gi|397780041|ref|YP_006544514.1| - 0.0031 17.3 0.0 3 7.7 0.0 3.2 1 1 1 3 3 3 1 Domain of unknown function (DUF2019) Vac14_Fab1_bd PF12755.2 gi|397780041|ref|YP_006544514.1| - 0.021 15.1 0.0 54 4.2 0.0 3.7 1 1 3 4 4 4 0 Vacuolar 14 Fab1-binding region ALF PF03752.8 gi|397780041|ref|YP_006544514.1| - 0.026 14.3 7.0 1.6 8.6 0.3 3.5 3 1 1 4 4 4 0 Short repeats of unknown function UPF0147 PF03685.8 gi|397780041|ref|YP_006544514.1| - 0.079 12.8 0.1 2.4 8.1 0.0 2.7 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0147) dCMP_cyt_deam_1 PF00383.17 gi|397780042|ref|YP_006544515.1| - 5.3e-21 74.1 0.0 6.5e-21 73.9 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.1 gi|397780042|ref|YP_006544515.1| - 0.00057 19.7 0.3 0.014 15.2 0.3 2.1 1 1 1 2 2 2 1 Bd3614-like deaminase Usp PF00582.21 gi|397780043|ref|YP_006544516.1| - 5.4e-16 59.0 2.0 5.6e-15 55.7 1.4 1.9 1 1 0 1 1 1 1 Universal stress protein family FMN_red PF03358.10 gi|397780043|ref|YP_006544516.1| - 0.06 12.8 0.0 0.078 12.4 0.0 1.2 1 0 0 1 1 1 0 NADPH-dependent FMN reductase CitMHS PF03600.11 gi|397780044|ref|YP_006544517.1| - 1e-58 198.6 30.4 1e-58 198.6 21.1 2.0 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.10 gi|397780044|ref|YP_006544517.1| - 9.4e-19 67.6 38.3 1.9e-18 66.6 26.5 1.4 1 1 0 1 1 1 1 Arsenical pump membrane protein NhaB PF06450.7 gi|397780044|ref|YP_006544517.1| - 4.9e-05 22.1 5.2 4.9e-05 22.1 3.6 3.3 3 1 0 3 3 3 1 Bacterial Na+/H+ antiporter B (NhaB) Haemagg_act PF05860.8 gi|397780044|ref|YP_006544517.1| - 3.2 7.5 4.6 4.3 7.1 0.1 2.2 2 0 0 2 2 2 0 haemagglutination activity domain Usp PF00582.21 gi|397780045|ref|YP_006544518.1| - 0.00021 21.5 0.1 0.00029 21.0 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family HEAT_PBS PF03130.11 gi|397780045|ref|YP_006544518.1| - 0.0076 16.6 0.1 0.037 14.4 0.0 2.2 2 0 0 2 2 2 1 PBS lyase HEAT-like repeat Peptidase_M54 PF07998.6 gi|397780046|ref|YP_006544519.1| - 4e-22 78.9 0.0 4.5e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|397780046|ref|YP_006544519.1| - 0.00019 21.1 0.0 0.0002 21.1 0.0 1.3 1 0 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.1 gi|397780046|ref|YP_006544519.1| - 0.00075 20.0 0.0 0.001 19.6 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|397780046|ref|YP_006544519.1| - 0.0047 15.4 0.3 0.0066 14.9 0.2 1.1 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_5 PF13688.1 gi|397780046|ref|YP_006544519.1| - 0.023 14.6 0.0 0.029 14.2 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M43 PF05572.8 gi|397780046|ref|YP_006544519.1| - 0.043 13.4 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M66 PF10462.4 gi|397780046|ref|YP_006544519.1| - 0.13 11.0 0.0 0.38 9.5 0.0 1.6 2 0 0 2 2 2 0 Peptidase M66 UPF0146 PF03686.8 gi|397780047|ref|YP_006544520.1| - 3.5e-22 78.5 0.1 4.3e-22 78.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) AAA PF00004.24 gi|397780048|ref|YP_006544521.1| - 1.3e-12 48.0 0.0 3.1e-12 46.8 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|397780048|ref|YP_006544521.1| - 7.1e-07 29.4 0.1 0.00027 21.0 0.0 3.1 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|397780048|ref|YP_006544521.1| - 5.2e-06 25.6 0.0 1.8e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|397780048|ref|YP_006544521.1| - 0.0005 19.5 0.0 0.00092 18.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Rad17 PF03215.10 gi|397780048|ref|YP_006544521.1| - 0.00055 18.7 0.0 0.011 14.4 0.0 2.3 1 1 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_5 PF07728.9 gi|397780048|ref|YP_006544521.1| - 0.00061 19.5 0.0 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.1 gi|397780048|ref|YP_006544521.1| - 0.00064 19.7 0.0 0.0016 18.5 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|397780048|ref|YP_006544521.1| - 0.0033 18.2 0.1 0.013 16.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|397780048|ref|YP_006544521.1| - 0.0034 16.9 0.0 0.0066 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|397780048|ref|YP_006544521.1| - 0.0038 17.1 0.0 0.0076 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|397780048|ref|YP_006544521.1| - 0.0066 15.5 0.0 0.02 14.0 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin AAA_16 PF13191.1 gi|397780048|ref|YP_006544521.1| - 0.0067 16.4 0.1 0.029 14.3 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain Bac_DnaA PF00308.13 gi|397780048|ref|YP_006544521.1| - 0.0082 15.8 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial dnaA protein RNA_helicase PF00910.17 gi|397780048|ref|YP_006544521.1| - 0.011 15.8 0.0 0.027 14.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.21 gi|397780048|ref|YP_006544521.1| - 0.014 14.8 0.0 0.059 12.8 0.0 2.1 2 1 0 2 2 2 0 Sigma-54 interaction domain DUF258 PF03193.11 gi|397780048|ref|YP_006544521.1| - 0.035 13.3 0.0 0.064 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|397780048|ref|YP_006544521.1| - 0.062 12.9 0.0 0.31 10.6 0.0 2.0 1 1 0 2 2 2 0 NACHT domain DUF3485 PF11984.3 gi|397780048|ref|YP_006544521.1| - 0.071 12.1 0.1 0.34 9.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3485) AAA_33 PF13671.1 gi|397780048|ref|YP_006544521.1| - 0.082 12.7 0.0 0.19 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AIRS PF00586.19 gi|397780049|ref|YP_006544522.1| - 1.3e-20 73.4 0.7 2.9e-20 72.2 0.5 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|397780049|ref|YP_006544522.1| - 5.6e-15 55.6 0.0 1e-14 54.8 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain PHP_C PF13263.1 gi|397780050|ref|YP_006544523.1| - 0.059 12.8 0.7 0.16 11.4 0.1 2.1 2 0 0 2 2 2 0 PHP-associated CBFD_NFYB_HMF PF00808.18 gi|397780051|ref|YP_006544524.1| - 8.2e-17 61.0 1.4 9e-17 60.8 1.0 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|397780051|ref|YP_006544524.1| - 1.9e-15 56.7 0.6 2.3e-15 56.4 0.4 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Bromo_TP PF07524.8 gi|397780051|ref|YP_006544524.1| - 1.6e-06 27.7 0.0 1.8e-06 27.6 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TAF PF02969.12 gi|397780051|ref|YP_006544524.1| - 1.7e-06 27.8 1.0 1.8e-06 27.7 0.7 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.1 gi|397780051|ref|YP_006544524.1| - 2.4e-06 27.6 0.1 2.5e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID-31kDa PF02291.10 gi|397780051|ref|YP_006544524.1| - 6.3e-05 22.7 0.1 6.7e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-T PF15511.1 gi|397780051|ref|YP_006544524.1| - 0.00029 20.2 0.3 0.00032 20.0 0.2 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T TFIID_20kDa PF03847.8 gi|397780051|ref|YP_006544524.1| - 0.00034 20.8 0.0 0.00037 20.7 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.11 gi|397780051|ref|YP_006544524.1| - 0.0012 18.6 0.0 0.002 17.9 0.0 1.3 1 1 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit AAA_32 PF13654.1 gi|397780051|ref|YP_006544524.1| - 0.0039 15.9 1.5 0.0039 15.9 1.0 1.1 1 0 0 1 1 1 1 AAA domain PCP_red PF08369.5 gi|397780051|ref|YP_006544524.1| - 0.043 13.6 4.3 0.19 11.5 0.3 2.3 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit PPE PF00823.14 gi|397780051|ref|YP_006544524.1| - 0.072 12.9 3.2 0.071 12.9 2.3 1.1 1 0 0 1 1 1 0 PPE family DUF1192 PF06698.6 gi|397780051|ref|YP_006544524.1| - 0.11 12.3 1.8 0.19 11.5 1.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1192) IGPD PF00475.13 gi|397780052|ref|YP_006544525.1| - 6.2e-62 207.7 0.2 7.8e-62 207.4 0.1 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Fae PF08714.6 gi|397780052|ref|YP_006544525.1| - 0.077 12.6 0.0 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 Formaldehyde-activating enzyme (Fae) His_biosynth PF00977.16 gi|397780053|ref|YP_006544526.1| - 7.8e-66 221.6 0.0 8.8e-66 221.4 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|397780053|ref|YP_006544526.1| - 5.8e-06 25.5 0.3 0.038 13.0 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|397780053|ref|YP_006544526.1| - 3.6e-05 23.1 0.3 0.062 12.5 0.0 2.3 2 0 0 2 2 2 2 PcrB family DHO_dh PF01180.16 gi|397780053|ref|YP_006544526.1| - 0.00033 19.7 0.2 0.0023 16.9 0.0 1.9 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|397780053|ref|YP_006544526.1| - 0.0055 15.9 0.9 0.0096 15.1 0.6 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Dus PF01207.12 gi|397780053|ref|YP_006544526.1| - 0.0057 15.5 0.0 0.52 9.0 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) FMN_dh PF01070.13 gi|397780053|ref|YP_006544526.1| - 0.006 15.4 0.0 0.029 13.2 0.0 1.9 1 1 1 2 2 2 1 FMN-dependent dehydrogenase TMP-TENI PF02581.12 gi|397780053|ref|YP_006544526.1| - 0.0065 15.5 0.1 0.038 13.1 0.0 2.0 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI NAD_binding_3 PF03447.11 gi|397780053|ref|YP_006544526.1| - 0.04 14.3 0.0 0.097 13.0 0.0 1.6 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain DeoC PF01791.4 gi|397780053|ref|YP_006544526.1| - 0.094 11.9 0.8 0.39 9.9 0.1 2.1 2 1 1 3 3 3 0 DeoC/LacD family aldolase HisG PF01634.13 gi|397780054|ref|YP_006544527.1| - 2.4e-50 170.3 0.3 3.8e-50 169.6 0.2 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|397780054|ref|YP_006544527.1| - 1.3e-27 95.4 0.2 2.7e-27 94.5 0.1 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|397780054|ref|YP_006544527.1| - 1.8e-07 30.9 0.1 1.7e-05 24.5 0.1 3.0 1 1 0 1 1 1 1 NMT1/THI5 like DUF881 PF05949.7 gi|397780054|ref|YP_006544527.1| - 0.012 15.0 0.1 0.031 13.7 0.1 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF881) SBP_bac_3 PF00497.15 gi|397780054|ref|YP_006544527.1| - 0.049 12.8 0.0 0.068 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 AdoMet_Synthase PF01941.14 gi|397780055|ref|YP_006544528.1| - 6.9e-175 581.2 0.4 7.9e-175 581.0 0.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Rsd_AlgQ PF04353.8 gi|397780055|ref|YP_006544528.1| - 0.045 13.4 0.0 0.19 11.4 0.0 1.9 2 0 0 2 2 2 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DisA_N PF02457.11 gi|397780056|ref|YP_006544529.1| - 3.2e-28 97.3 0.0 5.4e-28 96.5 0.0 1.4 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding CoA_binding PF02629.14 gi|397780057|ref|YP_006544530.1| - 7.8e-21 74.3 0.9 7.8e-21 74.3 0.6 2.3 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|397780057|ref|YP_006544530.1| - 2.4e-13 49.9 0.5 2.1e-12 46.8 0.3 2.2 1 1 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|397780057|ref|YP_006544530.1| - 8.2e-09 35.1 1.1 1.2e-08 34.6 0.1 1.8 2 1 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|397780057|ref|YP_006544530.1| - 2.3e-08 34.1 1.6 2.3e-07 30.9 0.1 2.2 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|397780057|ref|YP_006544530.1| - 0.018 15.5 0.1 0.051 14.0 0.1 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold TP_methylase PF00590.15 gi|397780057|ref|YP_006544530.1| - 0.047 13.3 1.6 0.75 9.4 0.1 2.2 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases ATP-grasp_2 PF08442.5 gi|397780058|ref|YP_006544531.1| - 9.1e-47 159.0 0.0 1.6e-46 158.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|397780058|ref|YP_006544531.1| - 2.9e-14 52.9 1.2 6.2e-14 51.8 0.8 1.6 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|397780058|ref|YP_006544531.1| - 8.2e-12 44.8 2.6 3.3e-09 36.2 0.1 2.6 3 0 0 3 3 3 2 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|397780058|ref|YP_006544531.1| - 1.4e-05 24.9 0.2 2.8e-05 23.9 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|397780058|ref|YP_006544531.1| - 3.7e-05 23.3 0.0 7.4e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TetR_N PF00440.18 gi|397780058|ref|YP_006544531.1| - 0.057 13.0 0.5 5.1 6.8 0.0 3.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family POR PF01558.13 gi|397780059|ref|YP_006544532.1| - 1.3e-28 100.0 0.2 1.6e-28 99.7 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|397780060|ref|YP_006544533.1| - 4.5e-40 136.7 0.5 6.5e-40 136.1 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|397780061|ref|YP_006544534.1| - 3.1e-74 249.3 0.0 3.8e-74 249.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|397780061|ref|YP_006544534.1| - 7.4e-06 25.5 0.3 1.4e-05 24.6 0.2 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.22 gi|397780062|ref|YP_006544535.1| - 4.6e-13 48.1 11.8 5.4e-08 32.1 0.8 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397780062|ref|YP_006544535.1| - 5.9e-12 45.7 6.3 2.1e-07 31.1 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397780062|ref|YP_006544535.1| - 3.7e-09 36.0 16.1 5.2e-07 29.2 0.8 2.9 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|397780062|ref|YP_006544535.1| - 3.7e-09 35.9 11.8 3e-07 29.9 1.0 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397780062|ref|YP_006544535.1| - 4.8e-09 35.8 9.7 7.5e-07 28.8 2.3 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397780062|ref|YP_006544535.1| - 5.7e-09 35.6 6.4 4.5e-05 23.2 0.7 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397780062|ref|YP_006544535.1| - 9.3e-07 28.6 14.8 0.0021 18.2 1.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|397780062|ref|YP_006544535.1| - 4.6e-05 23.6 12.4 0.00043 20.4 8.7 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397780062|ref|YP_006544535.1| - 0.00013 22.6 10.9 0.08 13.6 1.3 2.6 2 1 1 3 3 3 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|397780062|ref|YP_006544535.1| - 0.00066 20.1 2.0 0.00066 20.1 1.4 2.7 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|397780062|ref|YP_006544535.1| - 0.0014 18.4 4.8 0.005 16.6 3.3 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|397780062|ref|YP_006544535.1| - 0.0024 17.8 10.6 0.18 11.8 4.0 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|397780062|ref|YP_006544535.1| - 0.0053 17.2 3.7 0.0053 17.2 2.6 2.9 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|397780062|ref|YP_006544535.1| - 0.018 15.4 1.1 0.018 15.4 0.8 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|397780062|ref|YP_006544535.1| - 0.025 14.9 0.5 0.025 14.9 0.4 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|397780062|ref|YP_006544535.1| - 0.064 13.6 12.7 6.9 7.0 5.4 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain zf-trcl PF13451.1 gi|397780062|ref|YP_006544535.1| - 0.95 9.1 0.1 0.95 9.1 0.0 2.3 2 0 0 2 2 2 0 Probable zinc-binding domain DUF4215 PF13948.1 gi|397780062|ref|YP_006544535.1| - 3.3 7.9 7.1 0.53 10.5 0.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4215) DUF164 PF02591.10 gi|397780062|ref|YP_006544535.1| - 6.2 6.7 10.7 3.9 7.3 0.0 3.0 2 1 0 2 2 2 0 Putative zinc ribbon domain Fumerase_C PF05683.7 gi|397780063|ref|YP_006544536.1| - 1.7e-42 144.8 0.1 2e-42 144.6 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.9 gi|397780064|ref|YP_006544537.1| - 6.4e-90 300.9 0.0 7.1e-90 300.7 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Ribosomal_L16 PF00252.13 gi|397780065|ref|YP_006544538.1| - 8.7e-34 116.1 0.2 1e-33 115.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e ABC_tran PF00005.22 gi|397780066|ref|YP_006544539.1| - 3.2e-31 108.4 0.0 4.6e-31 107.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780066|ref|YP_006544539.1| - 7.6e-11 42.4 0.0 0.0002 21.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA PF00004.24 gi|397780066|ref|YP_006544539.1| - 1.4e-07 31.7 0.1 2e-06 28.0 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|397780066|ref|YP_006544539.1| - 3.1e-06 27.2 0.0 4.4e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|397780066|ref|YP_006544539.1| - 2e-05 23.8 0.0 0.01 14.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|397780066|ref|YP_006544539.1| - 0.00053 19.2 0.0 0.00087 18.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|397780066|ref|YP_006544539.1| - 0.00054 19.9 0.1 0.004 17.1 0.0 2.3 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|397780066|ref|YP_006544539.1| - 0.00055 18.7 0.0 0.00076 18.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|397780066|ref|YP_006544539.1| - 0.00058 20.0 0.2 0.0015 18.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|397780066|ref|YP_006544539.1| - 0.0019 17.8 0.1 0.0065 16.1 0.0 1.9 2 1 0 2 2 2 1 NACHT domain AAA_5 PF07728.9 gi|397780066|ref|YP_006544539.1| - 0.0034 17.1 0.0 0.0068 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|397780066|ref|YP_006544539.1| - 0.0034 18.2 1.1 0.0063 17.3 0.7 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|397780066|ref|YP_006544539.1| - 0.0038 17.5 0.1 0.0062 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|397780066|ref|YP_006544539.1| - 0.0042 16.3 0.0 1.3 8.1 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|397780066|ref|YP_006544539.1| - 0.0045 16.8 0.0 0.0087 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|397780066|ref|YP_006544539.1| - 0.0048 16.4 0.1 0.0086 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|397780066|ref|YP_006544539.1| - 0.0052 17.0 0.1 0.03 14.6 0.1 2.0 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|397780066|ref|YP_006544539.1| - 0.0095 15.4 0.0 0.019 14.4 0.0 1.5 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Arch_ATPase PF01637.13 gi|397780066|ref|YP_006544539.1| - 0.0098 15.6 0.1 0.062 13.0 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase AAA_19 PF13245.1 gi|397780066|ref|YP_006544539.1| - 0.011 15.4 1.1 0.041 13.6 0.3 2.2 2 1 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|397780066|ref|YP_006544539.1| - 0.014 14.7 0.1 0.038 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|397780066|ref|YP_006544539.1| - 0.028 13.5 0.0 0.045 12.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|397780066|ref|YP_006544539.1| - 0.029 14.2 0.0 0.088 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|397780066|ref|YP_006544539.1| - 0.034 13.0 0.0 0.057 12.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|397780066|ref|YP_006544539.1| - 0.038 13.4 0.6 0.62 9.4 0.1 2.0 1 1 1 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|397780066|ref|YP_006544539.1| - 0.038 13.9 0.0 0.085 12.7 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|397780066|ref|YP_006544539.1| - 0.04 12.4 0.1 0.34 9.4 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class RNA_helicase PF00910.17 gi|397780066|ref|YP_006544539.1| - 0.054 13.6 0.1 0.22 11.6 0.0 2.0 3 0 0 3 3 2 0 RNA helicase Miro PF08477.8 gi|397780066|ref|YP_006544539.1| - 0.054 13.9 0.1 0.13 12.7 0.0 1.6 2 0 0 2 2 1 0 Miro-like protein IstB_IS21 PF01695.12 gi|397780066|ref|YP_006544539.1| - 0.059 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|397780066|ref|YP_006544539.1| - 0.064 12.9 0.5 4 7.1 0.2 2.3 2 0 0 2 2 2 0 NTPase MobB PF03205.9 gi|397780066|ref|YP_006544539.1| - 0.073 12.7 0.1 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|397780066|ref|YP_006544539.1| - 0.084 12.4 0.1 0.4 10.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|397780066|ref|YP_006544539.1| - 0.099 12.2 0.0 0.26 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|397780066|ref|YP_006544539.1| - 0.1 11.7 0.0 0.25 10.4 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|397780066|ref|YP_006544539.1| - 0.12 11.4 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus BPD_transp_1 PF00528.17 gi|397780067|ref|YP_006544540.1| - 2.7e-24 85.6 14.8 2.7e-24 85.6 10.2 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Phage_holin_1 PF04531.8 gi|397780067|ref|YP_006544540.1| - 7.5 6.7 8.2 4.2 7.5 0.1 2.9 2 1 1 3 3 3 0 Bacteriophage holin NMT1_2 PF13379.1 gi|397780068|ref|YP_006544541.1| - 5e-43 147.3 0.1 6.4e-43 146.9 0.1 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|397780068|ref|YP_006544541.1| - 5.1e-22 78.5 0.0 6.8e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|397780068|ref|YP_006544541.1| - 4.8e-07 29.4 0.0 6.6e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Gp-FAR-1 PF05823.7 gi|397780069|ref|YP_006544542.1| - 0.071 13.0 0.0 0.098 12.6 0.0 1.3 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) E1-E2_ATPase PF00122.15 gi|397780070|ref|YP_006544543.1| - 1.8e-44 151.4 0.1 1.8e-44 151.4 0.1 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|397780070|ref|YP_006544543.1| - 5.2e-37 128.3 0.7 8.7e-37 127.6 0.5 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|397780070|ref|YP_006544543.1| - 3.5e-14 53.4 0.0 1.6e-13 51.2 0.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|397780070|ref|YP_006544543.1| - 3.9e-05 23.3 0.2 0.00086 18.9 0.0 3.0 4 0 0 4 4 4 1 haloacid dehalogenase-like hydrolase Lyase_1 PF00206.15 gi|397780071|ref|YP_006544544.1| - 2.2e-57 194.6 0.0 6.4e-57 193.1 0.0 1.7 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.1 gi|397780071|ref|YP_006544544.1| - 9.4e-14 51.2 0.8 9.4e-14 51.2 0.5 2.3 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal DUF1454 PF07305.7 gi|397780071|ref|YP_006544544.1| - 0.15 11.1 0.1 0.32 10.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1454) Asparaginase PF00710.15 gi|397780072|ref|YP_006544545.1| - 1.3e-85 287.0 0.0 1.5e-85 286.8 0.0 1.0 1 0 0 1 1 1 1 Asparaginase GatB_N PF02934.10 gi|397780073|ref|YP_006544546.1| - 1.1e-66 224.6 0.0 1.6e-66 224.1 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.9 gi|397780073|ref|YP_006544546.1| - 6e-14 51.9 0.0 3.5e-13 49.5 0.0 2.2 2 0 0 2 2 2 1 GAD domain GatB_Yqey PF02637.13 gi|397780073|ref|YP_006544546.1| - 4e-13 49.3 0.0 7e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 GatB domain YqeY PF09424.5 gi|397780073|ref|YP_006544546.1| - 1.9e-05 24.5 0.1 4e-05 23.4 0.1 1.6 1 0 0 1 1 1 1 Yqey-like protein Nitroreductase PF00881.19 gi|397780076|ref|YP_006544549.1| - 2.3e-38 131.6 0.1 2.7e-38 131.3 0.1 1.1 1 0 0 1 1 1 1 Nitroreductase family Xlink PF00193.12 gi|397780076|ref|YP_006544549.1| - 0.033 14.2 0.0 0.048 13.7 0.0 1.3 1 0 0 1 1 1 0 Extracellular link domain DUF555 PF04475.7 gi|397780077|ref|YP_006544550.1| - 3.7e-48 161.7 0.2 4.2e-48 161.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Dodecin PF07311.7 gi|397780077|ref|YP_006544550.1| - 0.099 12.6 0.6 0.32 11.0 0.1 2.0 2 0 0 2 2 2 0 Dodecin PfkB PF00294.19 gi|397780078|ref|YP_006544551.1| - 2.8e-44 151.4 0.0 3.4e-44 151.1 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF2070 PF09843.4 gi|397780079|ref|YP_006544552.1| - 1.9e-50 170.8 0.1 3.3e-50 170.0 0.0 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF217 PF02697.9 gi|397780081|ref|YP_006544554.1| - 6e-05 23.2 1.3 7.1e-05 22.9 0.9 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 TBPIP PF07106.8 gi|397780081|ref|YP_006544554.1| - 0.0052 16.3 0.2 0.0062 16.1 0.2 1.0 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) MgtE_N PF03448.12 gi|397780081|ref|YP_006544554.1| - 0.0068 16.7 0.7 0.0083 16.4 0.5 1.2 1 0 0 1 1 1 1 MgtE intracellular N domain YtxH PF12732.2 gi|397780081|ref|YP_006544554.1| - 0.02 15.2 0.5 0.026 14.9 0.3 1.3 1 0 0 1 1 1 0 YtxH-like protein FCD PF07729.7 gi|397780081|ref|YP_006544554.1| - 0.029 14.6 1.4 0.034 14.4 1.0 1.2 1 0 0 1 1 1 0 FCD domain ETC_C1_NDUFA5 PF04716.9 gi|397780081|ref|YP_006544554.1| - 0.038 13.5 1.3 0.059 12.9 0.9 1.3 1 0 0 1 1 1 0 ETC complex I subunit conserved region Shikimate_DH PF01488.15 gi|397780081|ref|YP_006544554.1| - 0.06 13.4 0.1 0.063 13.3 0.1 1.1 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Syntaxin-6_N PF09177.6 gi|397780081|ref|YP_006544554.1| - 0.062 13.6 0.2 0.076 13.4 0.1 1.2 1 0 0 1 1 1 0 Syntaxin 6, N-terminal YfcL PF08891.6 gi|397780081|ref|YP_006544554.1| - 0.07 13.1 0.2 0.087 12.8 0.2 1.2 1 0 0 1 1 1 0 YfcL protein GvpK PF05121.7 gi|397780081|ref|YP_006544554.1| - 0.11 12.2 1.5 0.15 11.8 1.1 1.2 1 0 0 1 1 1 0 Gas vesicle protein K DUF3007 PF11460.3 gi|397780081|ref|YP_006544554.1| - 0.13 12.3 0.5 0.18 11.8 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) EVE PF01878.13 gi|397780082|ref|YP_006544555.1| - 0.00013 21.9 0.0 0.00014 21.8 0.0 1.0 1 0 0 1 1 1 1 EVE domain Aminotran_1_2 PF00155.16 gi|397780083|ref|YP_006544556.1| - 1.3e-28 100.0 0.0 1.6e-28 99.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|397780083|ref|YP_006544556.1| - 3.7e-09 35.6 0.0 4.8e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DUF3782 PF12644.2 gi|397780083|ref|YP_006544556.1| - 0.051 13.3 0.2 0.17 11.6 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) TIR_2 PF13676.1 gi|397780086|ref|YP_006544559.1| - 9.3e-19 67.4 0.0 1.5e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 TIR domain DUF1863 PF08937.6 gi|397780086|ref|YP_006544559.1| - 5.5e-07 29.6 0.0 3e-06 27.2 0.0 2.0 1 1 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) Nuc_deoxyrib_tr PF05014.10 gi|397780086|ref|YP_006544559.1| - 0.068 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Methylase_S PF01420.14 gi|590000640|ref|YP_006544560.2| - 2.1e-26 92.9 0.0 1.2e-13 51.4 0.0 2.3 2 1 0 2 2 2 2 Type I restriction modification DNA specificity domain N6_Mtase PF02384.11 gi|397780088|ref|YP_006544561.1| - 1.3e-62 211.6 0.0 1.8e-62 211.2 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|397780088|ref|YP_006544561.1| - 2.2e-11 43.8 0.0 4.8e-11 42.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain HsdM_N PF12161.3 gi|397780088|ref|YP_006544561.1| - 3.2e-10 40.5 0.0 6.5e-10 39.5 0.0 1.6 1 0 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.13 gi|397780088|ref|YP_006544561.1| - 4.1e-08 32.9 0.0 1.6e-07 31.0 0.0 1.9 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|397780088|ref|YP_006544561.1| - 0.035 13.4 0.0 3.5 6.9 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase small domain NosL PF05573.7 gi|397780088|ref|YP_006544561.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 NosL EcoEI_R_C PF08463.5 gi|397780089|ref|YP_006544562.1| - 1.2e-29 103.2 0.1 6.4e-29 100.9 0.1 2.3 2 0 0 2 2 2 1 EcoEI R protein C-terminal ResIII PF04851.10 gi|397780089|ref|YP_006544562.1| - 1.6e-29 103.0 0.0 3.9e-29 101.8 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HSDR_N_2 PF13588.1 gi|397780089|ref|YP_006544562.1| - 2.4e-07 30.5 0.0 4.4e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.9 gi|397780089|ref|YP_006544562.1| - 2.9e-07 30.4 0.0 1.6e-06 28.0 0.0 2.2 1 1 1 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DEAD PF00270.24 gi|397780089|ref|YP_006544562.1| - 3.6e-06 26.5 0.0 1.5e-05 24.5 0.0 2.0 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|397780089|ref|YP_006544562.1| - 1.7e-05 24.5 0.1 3.7e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|397780089|ref|YP_006544562.1| - 0.00013 20.8 0.0 0.0004 19.2 0.0 1.8 1 1 1 2 2 2 1 SNF2 family N-terminal domain DDE_Tnp_1_2 PF13586.1 gi|397780090|ref|YP_006544563.1| - 3.4e-14 52.7 2.0 4.2e-14 52.4 1.4 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|397780090|ref|YP_006544563.1| - 2.1e-10 40.5 0.2 2.6e-10 40.1 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|397780090|ref|YP_006544563.1| - 0.008 15.7 0.1 0.0098 15.5 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease EVE PF01878.13 gi|397780093|ref|YP_006544566.1| - 9.8e-06 25.6 0.0 1.1e-05 25.5 0.0 1.0 1 0 0 1 1 1 1 EVE domain DUF4062 PF13271.1 gi|397780094|ref|YP_006544567.1| - 2.4e-23 81.9 0.0 6.1e-23 80.6 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4062) HATPase_c_4 PF13749.1 gi|397780094|ref|YP_006544567.1| - 4.5e-20 71.2 0.0 1e-19 70.1 0.0 1.6 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal HTH_24 PF13412.1 gi|397780094|ref|YP_006544567.1| - 4.6e-10 38.7 0.6 1.4e-09 37.1 0.2 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|397780094|ref|YP_006544567.1| - 0.00012 21.6 0.0 0.00026 20.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|397780094|ref|YP_006544567.1| - 0.00034 20.0 0.1 0.00071 19.0 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|397780094|ref|YP_006544567.1| - 0.0031 17.2 0.0 0.012 15.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|397780094|ref|YP_006544567.1| - 0.011 15.4 0.0 0.048 13.3 0.0 2.2 1 0 0 1 1 1 0 MarR family TIR_2 PF13676.1 gi|397780094|ref|YP_006544567.1| - 0.013 15.6 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 TIR domain DUF977 PF06163.6 gi|397780094|ref|YP_006544567.1| - 0.063 13.0 0.2 0.17 11.5 0.1 1.7 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) MarR PF01047.17 gi|397780094|ref|YP_006544567.1| - 0.087 12.5 0.2 0.27 10.9 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_DeoR PF08220.7 gi|397780094|ref|YP_006544567.1| - 0.1 12.1 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|397780094|ref|YP_006544567.1| - 0.11 12.5 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|397780094|ref|YP_006544567.1| - 0.12 12.2 0.0 0.64 9.8 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|397780094|ref|YP_006544567.1| - 0.12 12.4 0.0 0.32 11.0 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_Mga PF08280.6 gi|397780094|ref|YP_006544567.1| - 0.17 11.6 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain OrfB_IS605 PF01385.14 gi|397780095|ref|YP_006544568.1| - 6.2e-42 143.5 0.0 1.4e-41 142.3 0.0 1.6 1 1 1 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|397780095|ref|YP_006544568.1| - 0.00032 20.3 0.1 0.0018 17.9 0.0 2.3 2 1 0 2 2 2 1 Putative transposase DNA-binding domain DUF4062 PF13271.1 gi|397780096|ref|YP_006544569.1| - 0.0026 17.7 0.0 0.0033 17.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4062) HNH_2 PF13391.1 gi|397780097|ref|YP_006544570.1| - 3.4e-12 45.9 0.0 6.3e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 HNH endonuclease PKD PF00801.15 gi|397780098|ref|YP_006544571.1| - 0.00087 18.9 1.1 0.0017 18.0 0.7 1.9 1 1 0 1 1 1 1 PKD domain Y_Y_Y PF07495.8 gi|397780098|ref|YP_006544571.1| - 0.031 14.0 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 Y_Y_Y domain NTP_transf_2 PF01909.18 gi|397780101|ref|YP_006544574.1| - 4.3e-11 42.9 0.0 5.2e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain PHAT PF09246.5 gi|397780101|ref|YP_006544574.1| - 0.052 13.1 0.0 0.064 12.8 0.0 1.1 1 0 0 1 1 1 0 PHAT HATPase_c_4 PF13749.1 gi|397780102|ref|YP_006544575.1| - 3.7e-23 81.1 0.0 1.6e-22 79.1 0.0 2.1 2 0 0 2 2 2 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|397780102|ref|YP_006544575.1| - 8.8e-15 54.9 0.0 1.4e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Divergent AAA domain HTH_36 PF13730.1 gi|397780102|ref|YP_006544575.1| - 0.044 13.9 0.1 0.18 11.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Hypoth_Ymh PF09509.5 gi|397780103|ref|YP_006544576.1| - 3.9e-39 133.1 0.0 6.2e-39 132.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (Hypoth_ymh) EVE PF01878.13 gi|397780104|ref|YP_006544577.1| - 1.3e-19 70.6 0.0 1.4e-19 70.4 0.0 1.0 1 0 0 1 1 1 1 EVE domain DUF91 PF01939.11 gi|397780105|ref|YP_006544578.1| - 0.0037 16.4 0.6 0.046 12.8 0.0 2.5 3 0 0 3 3 3 1 Protein of unknown function DUF91 DUF365 PF04033.7 gi|397780106|ref|YP_006544579.1| - 2.2e-41 139.7 0.3 2.7e-41 139.4 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF365) EVE PF01878.13 gi|397780107|ref|YP_006544580.1| - 8.9e-23 80.8 0.0 1e-22 80.7 0.0 1.0 1 0 0 1 1 1 1 EVE domain Dev_Cell_Death PF10539.4 gi|397780107|ref|YP_006544580.1| - 0.029 13.9 0.0 0.036 13.6 0.0 1.2 1 0 0 1 1 1 0 Development and cell death domain Lon_2 PF13337.1 gi|397780108|ref|YP_006544581.1| - 4.5e-185 615.3 0.0 5.3e-185 615.1 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Lon_C PF05362.8 gi|397780108|ref|YP_006544581.1| - 9.3e-08 31.6 0.0 1.4e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|397780108|ref|YP_006544581.1| - 0.00084 18.8 0.8 0.002 17.6 0.2 1.9 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase IstB_IS21 PF01695.12 gi|397780108|ref|YP_006544581.1| - 0.0098 15.3 0.0 0.021 14.2 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein PglZ PF08665.7 gi|397780109|ref|YP_006544582.1| - 7e-05 22.5 0.1 0.00063 19.4 0.0 2.2 2 0 0 2 2 2 1 PglZ domain Methyltransf_26 PF13659.1 gi|397780110|ref|YP_006544583.1| - 6e-22 77.8 0.0 1.9e-20 73.0 0.0 2.6 2 0 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.11 gi|397780110|ref|YP_006544583.1| - 9.1e-11 41.3 0.0 2.7e-05 23.4 0.0 2.2 2 0 0 2 2 2 2 N-6 DNA Methylase UPF0020 PF01170.13 gi|397780110|ref|YP_006544583.1| - 0.00061 19.4 0.0 0.035 13.6 0.0 2.3 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|397780110|ref|YP_006544583.1| - 0.049 14.2 0.0 11 6.5 0.0 3.4 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397780110|ref|YP_006544583.1| - 0.11 12.1 0.0 0.44 10.1 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Imm1 PF14430.1 gi|397780111|ref|YP_006544584.1| - 0.046 13.8 0.1 9.9 6.3 0.1 2.9 3 0 0 3 3 3 0 Immunity protein Imm1 HTH_32 PF13565.1 gi|397780111|ref|YP_006544584.1| - 0.54 11.0 3.0 33 5.3 0.0 4.4 4 1 0 4 4 4 0 Homeodomain-like domain DUF1788 PF08747.6 gi|397780112|ref|YP_006544585.1| - 1.5e-07 31.3 0.0 2.1e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) TGFb_propeptide PF00688.13 gi|397780112|ref|YP_006544585.1| - 0.14 11.4 0.2 0.18 11.0 0.1 1.2 1 0 0 1 1 1 0 TGF-beta propeptide DDE_Tnp_1 PF01609.16 gi|397780114|ref|YP_006544587.1| - 4.3e-18 65.6 2.8 9.8e-18 64.4 2.0 1.5 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|397780114|ref|YP_006544587.1| - 0.0003 20.9 0.5 0.00066 19.8 0.4 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|397780114|ref|YP_006544587.1| - 0.0055 16.3 0.4 0.0086 15.6 0.3 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.1 gi|397780114|ref|YP_006544587.1| - 0.018 15.0 0.4 0.018 15.0 0.3 1.8 2 0 0 2 2 2 0 Transposase DDE domain DUF772 PF05598.6 gi|397780114|ref|YP_006544587.1| - 0.023 14.6 0.5 0.044 13.6 0.3 1.5 1 0 0 1 1 1 0 Transposase domain (DUF772) Plant_tran PF04827.9 gi|397780114|ref|YP_006544587.1| - 0.028 13.7 0.0 0.054 12.8 0.0 1.4 1 0 0 1 1 1 0 Plant transposon protein cobW PF02492.14 gi|397780115|ref|YP_006544588.1| - 0.023 14.1 0.3 6.3 6.2 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Metallophos PF00149.23 gi|397780117|ref|YP_006544590.1| - 2.8e-12 46.4 0.3 7e-11 41.9 0.1 2.1 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|397780117|ref|YP_006544590.1| - 2.1e-09 37.3 0.0 3e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|397780117|ref|YP_006544590.1| - 0.059 12.5 0.3 0.22 10.6 0.1 1.9 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily AAA_27 PF13514.1 gi|397780118|ref|YP_006544591.1| - 3.6e-13 48.1 72.1 2.8e-10 38.6 20.8 5.1 3 2 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|397780118|ref|YP_006544591.1| - 3.7e-13 49.2 0.4 5e-07 29.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|397780118|ref|YP_006544591.1| - 3.4e-11 42.5 0.0 7.4e-11 41.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|397780118|ref|YP_006544591.1| - 6.4e-08 33.1 66.3 40 4.4 45.0 5.0 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|397780118|ref|YP_006544591.1| - 3.4e-07 29.6 4.2 9.6e-07 28.1 0.1 3.4 2 2 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|397780118|ref|YP_006544591.1| - 0.0001 22.3 0.0 0.027 14.4 0.0 2.9 3 0 0 3 3 3 1 AAA domain TBPIP PF07106.8 gi|397780118|ref|YP_006544591.1| - 0.0015 18.1 7.8 0.0015 18.1 5.4 5.5 2 2 1 4 4 4 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ABC_tran PF00005.22 gi|397780118|ref|YP_006544591.1| - 0.014 15.6 15.7 0.46 10.7 0.0 5.5 3 2 1 4 4 4 0 ABC transporter Fib_alpha PF08702.5 gi|397780118|ref|YP_006544591.1| - 0.033 14.3 0.8 0.033 14.3 0.6 6.2 2 2 5 7 7 7 0 Fibrinogen alpha/beta chain family MMR_HSR1 PF01926.18 gi|397780118|ref|YP_006544591.1| - 0.071 13.0 0.3 0.47 10.4 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase CCDC92 PF14916.1 gi|397780118|ref|YP_006544591.1| - 0.072 12.6 12.6 2.6 7.7 1.2 4.2 3 0 0 3 3 3 0 Coiled-coil domain of unknown function MukB PF04310.7 gi|397780118|ref|YP_006544591.1| - 0.11 11.8 0.0 0.29 10.4 0.0 1.6 1 0 0 1 1 1 0 MukB N-terminal Reo_sigmaC PF04582.7 gi|397780118|ref|YP_006544591.1| - 3.4 6.7 19.8 1.2 8.3 0.2 4.8 2 2 3 5 5 5 0 Reovirus sigma C capsid protein AAA_22 PF13401.1 gi|397780119|ref|YP_006544592.1| - 0.015 15.4 0.0 0.047 13.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF4019 PF13211.1 gi|397780123|ref|YP_006544596.1| - 0.0098 16.1 0.1 0.021 15.0 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF4019) LigT_PEase PF02834.11 gi|397780123|ref|YP_006544596.1| - 0.062 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 LigT like Phosphoesterase DUF3887 PF13026.1 gi|397780123|ref|YP_006544596.1| - 0.073 13.3 0.1 0.13 12.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3887) LPAM_2 PF13627.1 gi|397780123|ref|YP_006544596.1| - 2.7 7.8 5.4 4.7 7.0 3.8 1.3 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site AA_permease PF00324.16 gi|397780124|ref|YP_006544597.1| - 6.3e-08 31.4 1.3 6.7e-08 31.3 0.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|397780124|ref|YP_006544597.1| - 0.00032 19.3 4.5 0.00037 19.1 3.1 1.0 1 0 0 1 1 1 1 Amino acid permease Aa_trans PF01490.13 gi|397780124|ref|YP_006544597.1| - 0.0072 14.8 2.7 0.0081 14.6 1.8 1.0 1 0 0 1 1 1 1 Transmembrane amino acid transporter protein Glug PF07581.7 gi|397780124|ref|YP_006544597.1| - 0.03 14.5 0.7 0.085 13.0 0.5 1.8 1 0 0 1 1 1 0 The GLUG motif HCV_NS4a PF01006.15 gi|397780124|ref|YP_006544597.1| - 2 8.0 6.6 0.22 11.0 1.3 1.9 1 1 1 2 2 2 0 Hepatitis C virus non-structural protein NS4a AA_permease_2 PF13520.1 gi|397780125|ref|YP_006544598.1| - 0.013 14.0 6.9 0.014 13.9 4.8 1.1 1 0 0 1 1 1 0 Amino acid permease Glycogen_syn PF05693.8 gi|397780125|ref|YP_006544598.1| - 0.017 13.4 0.1 0.017 13.4 0.1 1.0 1 0 0 1 1 1 0 Glycogen synthase DUF4131 PF13567.1 gi|397780125|ref|YP_006544598.1| - 4.1 6.7 5.2 5 6.4 3.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Aminotran_5 PF00266.14 gi|397780127|ref|YP_006544600.1| - 6.8e-78 261.9 0.0 8e-78 261.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|397780127|ref|YP_006544600.1| - 4.8e-08 32.4 0.1 7.1e-08 31.8 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|397780127|ref|YP_006544600.1| - 0.001 17.4 0.0 0.0014 16.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|397780127|ref|YP_006544600.1| - 0.014 13.8 0.0 0.021 13.2 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.16 gi|397780127|ref|YP_006544600.1| - 0.094 11.8 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Methyltransf_11 PF08241.7 gi|397780129|ref|YP_006544602.1| - 3.4e-10 40.2 0.1 7.3e-10 39.2 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397780129|ref|YP_006544602.1| - 1.8e-09 37.5 0.0 7.7e-09 35.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain PD-C2-AF1 PF09310.5 gi|397780130|ref|YP_006544603.1| - 0.085 12.0 0.5 0.13 11.3 0.4 1.2 1 0 0 1 1 1 0 POU domain, class 2, associating factor 1 Peptidase_M24 PF00557.19 gi|397780131|ref|YP_006544604.1| - 2.7e-34 118.5 0.0 4e-34 118.0 0.0 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|397780131|ref|YP_006544604.1| - 2.8e-09 37.5 0.0 4.5e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Methyltransf_11 PF08241.7 gi|590000641|ref|YP_006544605.2| - 6.1e-16 58.6 0.0 1.9e-15 57.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|590000641|ref|YP_006544605.2| - 2.4e-14 53.1 0.0 3.6e-12 46.1 0.0 2.1 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|590000641|ref|YP_006544605.2| - 5.1e-14 52.8 0.1 2.9e-13 50.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|590000641|ref|YP_006544605.2| - 1.1e-10 41.7 0.0 6.1e-10 39.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|590000641|ref|YP_006544605.2| - 1.5e-08 34.9 0.0 5.3e-08 33.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|590000641|ref|YP_006544605.2| - 1.4e-07 31.3 0.0 2.4e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|590000641|ref|YP_006544605.2| - 1.6e-07 31.3 0.7 1.1e-06 28.6 0.5 2.1 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|590000641|ref|YP_006544605.2| - 3.6e-07 29.5 0.0 5.3e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|590000641|ref|YP_006544605.2| - 9.3e-06 25.1 0.0 1.5e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|590000641|ref|YP_006544605.2| - 0.00011 21.2 0.0 0.00017 20.6 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_24 PF13578.1 gi|590000641|ref|YP_006544605.2| - 0.0011 19.7 0.0 0.002 18.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|590000641|ref|YP_006544605.2| - 0.0013 17.8 0.0 0.0017 17.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|590000641|ref|YP_006544605.2| - 0.0069 15.9 0.0 0.0099 15.4 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.14 gi|590000641|ref|YP_006544605.2| - 0.007 15.9 0.0 0.0096 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.12 gi|590000641|ref|YP_006544605.2| - 0.039 13.0 0.0 0.056 12.4 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_15 PF09445.5 gi|590000641|ref|YP_006544605.2| - 0.055 13.0 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_2 PF00891.13 gi|590000641|ref|YP_006544605.2| - 0.092 11.9 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_32 PF13679.1 gi|590000641|ref|YP_006544605.2| - 0.13 11.9 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.6 gi|590000641|ref|YP_006544605.2| - 0.14 11.5 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) FmrO PF07091.6 gi|590000641|ref|YP_006544605.2| - 0.16 10.9 0.0 0.23 10.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Radical_SAM PF04055.16 gi|590000642|ref|YP_006544606.2| - 1.4e-13 51.3 0.1 3.4e-13 50.1 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|590000642|ref|YP_006544606.2| - 5.7e-07 29.7 0.3 5.7e-07 29.7 0.2 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|590000642|ref|YP_006544606.2| - 6.2e-07 29.4 0.0 1.3e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|590000642|ref|YP_006544606.2| - 0.00014 21.9 0.3 0.0003 20.9 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Pyridox_oxidase PF01243.15 gi|590000643|ref|YP_009001401.1| - 1.2e-12 47.6 0.0 2.1e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|590000643|ref|YP_009001401.1| - 0.068 13.0 0.0 0.12 12.1 0.0 1.6 1 1 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.2 gi|590000643|ref|YP_009001401.1| - 0.14 12.4 0.0 0.57 10.5 0.0 2.1 2 1 0 2 2 2 0 Pyridoxamine 5'-phosphate oxidase DNA_alkylation PF08713.6 gi|397780136|ref|YP_006544609.1| - 1.8e-59 200.8 0.2 2.1e-59 200.6 0.1 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme HEAT_2 PF13646.1 gi|397780136|ref|YP_006544609.1| - 0.011 16.0 0.0 0.11 12.8 0.0 2.3 2 1 0 2 2 2 0 HEAT repeats Dicer_dimer PF03368.9 gi|397780136|ref|YP_006544609.1| - 0.042 13.6 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 Dicer dimerisation domain PAS PF00989.19 gi|397780137|ref|YP_006544610.1| - 2.4e-23 82.0 0.1 1.1e-08 34.8 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|397780137|ref|YP_006544610.1| - 3e-23 82.1 0.4 4.2e-07 30.2 0.0 4.9 4 1 0 4 4 4 3 PAS domain PAS_4 PF08448.5 gi|397780137|ref|YP_006544610.1| - 3.7e-23 81.6 0.1 1.1e-12 47.9 0.0 3.5 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.19 gi|397780137|ref|YP_006544610.1| - 5e-20 71.5 0.0 1.8e-19 69.8 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.1 gi|397780137|ref|YP_006544610.1| - 4.8e-13 48.4 0.0 1.4e-05 24.7 0.0 3.7 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.21 gi|397780137|ref|YP_006544610.1| - 5.4e-13 48.6 0.0 1.4e-12 47.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|397780137|ref|YP_006544610.1| - 2.6e-09 37.0 0.0 1.1e-07 31.8 0.0 2.7 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|397780137|ref|YP_006544610.1| - 0.00017 21.2 0.0 0.00036 20.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|397780137|ref|YP_006544610.1| - 0.00021 21.2 0.1 0.042 13.8 0.0 4.1 3 1 0 3 3 3 1 PAS fold PAS_11 PF14598.1 gi|397780137|ref|YP_006544610.1| - 0.00072 19.4 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 PAS domain SPOB_a PF14689.1 gi|397780137|ref|YP_006544610.1| - 0.005 16.3 0.1 0.017 14.7 0.1 1.9 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_10 PF13596.1 gi|397780137|ref|YP_006544610.1| - 0.02 15.1 0.0 1.3 9.3 0.0 3.2 3 1 0 3 3 3 0 PAS domain Rab15_effector PF15208.1 gi|397780137|ref|YP_006544610.1| - 0.1 12.0 0.1 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 Rab15 effector RRF PF01765.14 gi|397780137|ref|YP_006544610.1| - 0.12 11.8 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Ribosome recycling factor Condensation PF00668.15 gi|590000644|ref|YP_009001402.1| - 0.0012 17.7 0.0 0.0015 17.4 0.0 1.0 1 0 0 1 1 1 1 Condensation domain Fer4 PF00037.22 gi|397780139|ref|YP_006544612.1| - 9.1e-09 34.5 19.6 7.5e-08 31.6 2.8 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397780139|ref|YP_006544612.1| - 1e-08 35.4 16.1 4.1e-06 27.0 4.8 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397780139|ref|YP_006544612.1| - 1.3e-07 31.7 3.7 3.3e-07 30.4 2.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397780139|ref|YP_006544612.1| - 5.1e-07 29.3 5.7 8.2e-07 28.7 3.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397780139|ref|YP_006544612.1| - 5.7e-06 25.9 2.5 5.7e-06 25.9 1.7 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|397780139|ref|YP_006544612.1| - 2.3e-05 24.1 8.1 5.3e-05 22.9 5.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397780139|ref|YP_006544612.1| - 6.5e-05 23.5 7.5 0.04 14.6 1.2 3.1 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|397780139|ref|YP_006544612.1| - 7.1e-05 22.4 4.1 7.1e-05 22.4 2.8 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|397780139|ref|YP_006544612.1| - 0.0015 18.8 3.6 0.038 14.3 0.4 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|397780139|ref|YP_006544612.1| - 0.028 14.4 7.5 0.12 12.4 4.8 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397780139|ref|YP_006544612.1| - 0.076 13.5 12.7 0.54 10.8 7.0 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|397780139|ref|YP_006544612.1| - 0.38 10.6 4.2 1.4 8.8 0.1 2.7 2 0 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Fer4_18 PF13746.1 gi|397780139|ref|YP_006544612.1| - 2.6 8.5 9.7 0.39 11.1 1.0 2.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|397780139|ref|YP_006544612.1| - 5.1 7.5 9.4 0.95 9.8 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain NTP_transf_2 PF01909.18 gi|397780140|ref|YP_006544613.1| - 6.3e-15 55.2 0.1 6.9e-15 55.1 0.1 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|397780140|ref|YP_006544613.1| - 0.011 15.7 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm MdcG PF10620.4 gi|397780140|ref|YP_006544613.1| - 0.012 15.1 0.0 0.033 13.7 0.0 1.6 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Pur_DNA_glyco PF02245.11 gi|397780141|ref|YP_006544614.1| - 3.2e-63 212.2 0.0 3.6e-63 212.0 0.0 1.0 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) DUF2795 PF11387.3 gi|397780142|ref|YP_006544615.1| - 2.8e-19 68.6 0.0 4.8e-19 67.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) AMP-binding PF00501.23 gi|397780144|ref|YP_006544617.1| - 9.9e-91 304.1 0.0 1.3e-90 303.7 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|397780144|ref|YP_006544617.1| - 2.3e-18 66.9 0.4 4.1e-18 66.0 0.3 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain TBP PF00352.16 gi|397780145|ref|YP_006544618.1| - 2.4e-56 187.0 0.4 6.2e-29 99.2 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|397780145|ref|YP_006544618.1| - 2.7e-05 24.1 0.0 0.034 14.2 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF3252 PF11623.3 gi|397780145|ref|YP_006544618.1| - 0.036 13.4 0.0 3.5 7.1 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3252) DUF155 PF02582.9 gi|397780145|ref|YP_006544618.1| - 0.058 13.2 0.0 5.5 6.8 0.0 2.5 2 1 1 3 3 3 0 Uncharacterised ACR, YagE family COG1723 DEAD_assoc PF08494.6 gi|397780146|ref|YP_006544619.1| - 3e-41 141.2 0.0 6e-41 140.2 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|397780146|ref|YP_006544619.1| - 1.8e-33 115.4 0.0 3.5e-33 114.4 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|397780146|ref|YP_006544619.1| - 5.6e-18 64.5 0.4 7.9e-16 57.6 0.3 2.9 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|397780146|ref|YP_006544619.1| - 7.8e-07 29.0 0.0 1.6e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|397780146|ref|YP_006544619.1| - 5.9e-05 22.0 0.0 9.6e-05 21.3 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.1 gi|397780146|ref|YP_006544619.1| - 0.06 13.4 0.0 0.3 11.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain Metallophos_2 PF12850.2 gi|397780147|ref|YP_006544620.1| - 0.00013 21.8 0.6 0.00031 20.5 0.5 1.5 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|397780147|ref|YP_006544620.1| - 0.0006 19.2 4.2 0.0025 17.2 3.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Radical_SAM PF04055.16 gi|397780148|ref|YP_006544621.1| - 0.048 13.8 0.0 0.084 13.0 0.0 1.4 1 0 0 1 1 1 0 Radical SAM superfamily Rep_fac_C PF08542.6 gi|397780149|ref|YP_006544622.1| - 1.4e-19 69.8 0.0 2.7e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|397780149|ref|YP_006544622.1| - 9.3e-17 61.4 0.1 1.9e-14 54.0 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|397780149|ref|YP_006544622.1| - 2.1e-15 56.7 0.0 2.8e-13 49.8 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|397780149|ref|YP_006544622.1| - 1.3e-08 34.2 0.2 1.6e-07 30.6 0.1 2.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|397780149|ref|YP_006544622.1| - 4.2e-06 26.6 0.0 8.1e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|397780149|ref|YP_006544622.1| - 5.3e-06 25.3 0.0 0.0011 17.7 0.0 2.1 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|397780149|ref|YP_006544622.1| - 8.5e-06 25.9 0.5 0.17 12.0 0.0 2.7 2 1 1 3 3 2 2 AAA domain DNA_pol3_delta PF06144.8 gi|397780149|ref|YP_006544622.1| - 6e-05 22.6 0.0 0.00011 21.7 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|397780149|ref|YP_006544622.1| - 0.0001 22.3 4.3 0.015 15.2 0.0 3.1 1 1 2 3 3 3 1 AAA ATPase domain AAA_3 PF07726.6 gi|397780149|ref|YP_006544622.1| - 0.0004 19.9 0.0 0.00073 19.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|397780149|ref|YP_006544622.1| - 0.00066 18.5 0.1 0.022 13.5 0.0 2.6 1 1 1 2 2 2 1 TIP49 C-terminus AAA_17 PF13207.1 gi|397780149|ref|YP_006544622.1| - 0.00071 20.3 0.1 0.0036 18.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|397780149|ref|YP_006544622.1| - 0.0012 18.8 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|397780149|ref|YP_006544622.1| - 0.0016 18.7 0.0 0.0029 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|397780149|ref|YP_006544622.1| - 0.0019 17.4 0.1 1.6 7.8 0.0 2.4 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|397780149|ref|YP_006544622.1| - 0.0031 16.9 0.0 0.0065 15.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|397780149|ref|YP_006544622.1| - 0.0053 16.4 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ArgK PF03308.11 gi|397780149|ref|YP_006544622.1| - 0.0089 14.8 0.1 0.71 8.5 0.0 2.2 1 1 1 2 2 2 1 ArgK protein AAA_25 PF13481.1 gi|397780149|ref|YP_006544622.1| - 0.009 15.4 0.2 0.03 13.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|397780149|ref|YP_006544622.1| - 0.026 14.0 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_2 PF07724.9 gi|397780149|ref|YP_006544622.1| - 0.026 14.4 0.0 0.059 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.21 gi|397780149|ref|YP_006544622.1| - 0.027 13.9 0.0 5.6 6.4 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain TPR_14 PF13428.1 gi|397780149|ref|YP_006544622.1| - 0.031 14.8 3.5 4.9 8.0 0.0 3.4 4 0 0 4 4 2 0 Tetratricopeptide repeat DBI_PRT PF02277.12 gi|397780149|ref|YP_006544622.1| - 0.035 13.1 0.3 0.082 11.9 0.0 1.6 2 0 0 2 2 2 0 Phosphoribosyltransferase AAA_19 PF13245.1 gi|397780149|ref|YP_006544622.1| - 0.041 13.6 0.0 0.086 12.6 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_24 PF13479.1 gi|397780149|ref|YP_006544622.1| - 0.09 12.3 0.0 0.23 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|397780149|ref|YP_006544622.1| - 0.098 11.6 0.0 0.35 9.7 0.0 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.1 gi|397780149|ref|YP_006544622.1| - 0.11 12.0 0.2 0.59 9.7 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|397780149|ref|YP_006544622.1| - 0.11 11.9 2.7 8.6 5.7 0.1 3.0 2 1 1 3 3 3 0 AAA-like domain ArsA_ATPase PF02374.10 gi|397780149|ref|YP_006544622.1| - 0.13 11.2 0.2 0.34 9.9 0.0 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase NACHT PF05729.7 gi|397780149|ref|YP_006544622.1| - 0.2 11.3 1.2 0.87 9.2 0.2 2.5 2 1 0 2 2 2 0 NACHT domain TPR_16 PF13432.1 gi|397780149|ref|YP_006544622.1| - 0.23 12.2 2.5 36 5.2 0.0 3.3 5 0 0 5 5 2 0 Tetratricopeptide repeat MCM PF00493.18 gi|397780150|ref|YP_006544623.1| - 1.4e-122 408.6 0.1 5.5e-65 219.3 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family LAGLIDADG_3 PF14528.1 gi|397780150|ref|YP_006544623.1| - 1.2e-11 44.6 0.0 8.5e-05 22.7 0.0 2.9 3 0 0 3 3 3 2 LAGLIDADG-like domain MCM_N PF14551.1 gi|397780150|ref|YP_006544623.1| - 5.5e-07 30.1 0.3 3.2e-06 27.6 0.1 2.4 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.9 gi|397780150|ref|YP_006544623.1| - 0.0085 15.8 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zn-ribbon_8 PF09723.5 gi|397780150|ref|YP_006544623.1| - 0.017 15.0 0.9 0.042 13.8 0.6 1.7 1 0 0 1 1 1 0 Zinc ribbon domain DUF1421 PF07223.6 gi|397780150|ref|YP_006544623.1| - 0.18 11.5 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1421) DUF1129 PF06570.6 gi|397780152|ref|YP_006544625.1| - 0.028 13.7 9.1 0.39 9.9 0.8 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1129) Tic20 PF09685.5 gi|397780152|ref|YP_006544625.1| - 0.034 14.1 1.7 0.034 14.1 1.1 3.0 2 1 0 2 2 2 0 Tic20-like protein DUF4181 PF13789.1 gi|397780152|ref|YP_006544625.1| - 0.91 9.4 12.4 1.5 8.8 0.8 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4181) DUF3093 PF11292.3 gi|397780152|ref|YP_006544625.1| - 6.2 6.6 8.9 2.4 7.9 0.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3093) UPF0150 PF03681.10 gi|397780154|ref|YP_006544627.1| - 2.8e-11 42.8 0.2 3.9e-11 42.3 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) YcfA PF07927.7 gi|397780155|ref|YP_006544628.1| - 0.00043 20.1 0.0 0.00064 19.5 0.0 1.2 1 0 0 1 1 1 1 YcfA-like protein DUF372 PF04036.7 gi|397780156|ref|YP_006544629.1| - 1e-21 76.0 1.6 1.4e-21 75.6 1.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|397780156|ref|YP_006544629.1| - 4e-20 71.6 0.3 5.6e-20 71.1 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF2478 PF10649.4 gi|397780156|ref|YP_006544629.1| - 0.044 13.1 0.0 0.064 12.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2478) TatD_DNase PF01026.16 gi|397780157|ref|YP_006544630.1| - 3e-16 59.4 0.0 6.6e-15 54.9 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase DUF424 PF04242.8 gi|397780158|ref|YP_006544631.1| - 6.7e-27 93.3 0.0 7.3e-27 93.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NMD3 PF04981.8 gi|397780159|ref|YP_006544632.1| - 2.5e-58 197.0 2.1 3.1e-58 196.7 1.4 1.1 1 0 0 1 1 1 1 NMD3 family PolC_DP2 PF03833.8 gi|397780159|ref|YP_006544632.1| - 0.02 12.5 4.8 0.0095 13.6 1.1 1.7 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 DUF2387 PF09526.5 gi|397780159|ref|YP_006544632.1| - 0.026 14.4 0.4 0.026 14.4 0.3 2.4 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|397780159|ref|YP_006544632.1| - 0.65 9.2 8.6 12 5.2 5.9 2.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|397780159|ref|YP_006544632.1| - 1.2 8.7 9.5 0.14 11.6 0.4 3.2 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|397780159|ref|YP_006544632.1| - 1.3 8.9 14.1 0.49 10.2 5.9 2.6 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|397780159|ref|YP_006544632.1| - 4.5 6.8 10.2 26 4.4 4.4 2.9 2 1 0 2 2 2 0 zinc-ribbon domain Cys_rich_KTR PF14205.1 gi|397780159|ref|YP_006544632.1| - 5.1 6.6 5.6 5.5 6.5 0.1 3.0 3 0 0 3 3 3 0 Cysteine-rich KTR zf-FPG_IleRS PF06827.9 gi|397780159|ref|YP_006544632.1| - 5.3 6.7 13.5 15 5.3 2.9 4.0 3 1 1 4 4 4 0 Zinc finger found in FPG and IleRS Met_10 PF02475.11 gi|397780160|ref|YP_006544633.1| - 4.8e-41 140.5 0.0 6.4e-41 140.1 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|397780160|ref|YP_006544633.1| - 6.1e-10 39.6 0.0 1.4e-09 38.5 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|397780160|ref|YP_006544633.1| - 4.9e-08 33.0 0.3 1.2e-07 31.7 0.2 1.8 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|397780160|ref|YP_006544633.1| - 6.1e-05 22.4 0.0 9.9e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|397780160|ref|YP_006544633.1| - 9.4e-05 22.0 0.0 0.00012 21.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|397780160|ref|YP_006544633.1| - 0.00042 19.7 0.0 0.00052 19.4 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|397780160|ref|YP_006544633.1| - 0.0022 17.6 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DNA_methylase PF00145.12 gi|397780160|ref|YP_006544633.1| - 0.0068 15.5 0.0 0.0089 15.1 0.0 1.1 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase PrmA PF06325.8 gi|397780160|ref|YP_006544633.1| - 0.012 14.8 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|397780160|ref|YP_006544633.1| - 0.013 15.8 0.0 0.024 15.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|397780160|ref|YP_006544633.1| - 0.037 12.7 0.0 0.052 12.2 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_23 PF13489.1 gi|397780160|ref|YP_006544633.1| - 0.14 11.8 0.0 0.28 10.8 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain DFP PF04127.10 gi|397780161|ref|YP_006544634.1| - 1.1e-39 135.9 0.1 1.5e-37 129.0 0.0 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|397780161|ref|YP_006544634.1| - 1.7e-29 102.1 0.4 7e-29 100.1 0.2 2.0 2 0 0 2 2 2 1 Flavoprotein Dus PF01207.12 gi|397780161|ref|YP_006544634.1| - 0.055 12.2 0.0 0.086 11.6 0.0 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Pyr_redox PF00070.22 gi|397780161|ref|YP_006544634.1| - 0.065 13.6 0.3 0.63 10.4 0.0 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase PALP PF00291.20 gi|397780161|ref|YP_006544634.1| - 0.2 10.8 3.6 0.45 9.6 0.0 2.6 2 1 1 3 3 3 0 Pyridoxal-phosphate dependent enzyme Glyco_trans_4_4 PF13579.1 gi|397780161|ref|YP_006544634.1| - 4.9 7.2 12.9 13 5.8 3.0 3.4 2 2 0 2 2 2 0 Glycosyl transferase 4-like domain GHMP_kinases_N PF00288.21 gi|397780162|ref|YP_006544635.1| - 2.5e-11 43.4 1.3 2.5e-11 43.4 0.9 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain DUF137 PF02006.11 gi|397780163|ref|YP_006544636.1| - 1e-66 223.6 0.4 1.3e-66 223.3 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 DNA_pol3_delta2 PF13177.1 gi|397780164|ref|YP_006544637.1| - 1.2e-11 44.5 0.0 4.1e-11 42.7 0.0 1.9 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|397780164|ref|YP_006544637.1| - 1.6e-08 34.8 0.0 8.3e-08 32.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|397780164|ref|YP_006544637.1| - 4.4e-07 28.9 0.0 0.0076 14.9 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|397780164|ref|YP_006544637.1| - 1.3e-05 25.3 0.1 0.00037 20.6 0.0 2.8 2 2 0 2 2 2 1 AAA domain Rep_fac_C PF08542.6 gi|397780164|ref|YP_006544637.1| - 1.7e-05 24.7 0.0 4.2e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_16 PF13191.1 gi|397780164|ref|YP_006544637.1| - 0.00015 21.8 4.8 0.00042 20.3 0.1 3.0 2 2 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|397780164|ref|YP_006544637.1| - 0.0012 18.5 0.0 0.0065 16.1 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain RuvB_N PF05496.7 gi|397780164|ref|YP_006544637.1| - 0.0024 16.9 0.0 0.006 15.6 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus FtsK_SpoIIIE PF01580.13 gi|397780164|ref|YP_006544637.1| - 0.0064 15.9 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|397780164|ref|YP_006544637.1| - 0.012 14.7 0.0 0.024 13.7 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|397780164|ref|YP_006544637.1| - 0.015 15.3 0.0 0.61 10.1 0.0 2.4 1 1 0 1 1 1 0 Sigma-54 interaction domain DUF3215 PF11503.3 gi|397780164|ref|YP_006544637.1| - 0.04 13.5 0.0 0.2 11.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3215) AAA_17 PF13207.1 gi|397780164|ref|YP_006544637.1| - 0.04 14.7 0.1 0.11 13.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF853 PF05872.7 gi|397780164|ref|YP_006544637.1| - 0.047 12.0 0.1 0.16 10.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) DUF2075 PF09848.4 gi|397780164|ref|YP_006544637.1| - 0.065 12.1 0.0 0.17 10.7 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.1 gi|397780164|ref|YP_006544637.1| - 0.073 13.0 0.1 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|397780164|ref|YP_006544637.1| - 0.083 12.3 0.0 0.24 10.8 0.0 1.7 1 1 0 1 1 1 0 AAA-like domain SRP54 PF00448.17 gi|397780164|ref|YP_006544637.1| - 0.11 11.9 0.0 5 6.5 0.0 2.5 2 1 1 3 3 3 0 SRP54-type protein, GTPase domain TrwB_AAD_bind PF10412.4 gi|397780164|ref|YP_006544637.1| - 0.12 10.9 0.0 0.2 10.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NACHT PF05729.7 gi|397780164|ref|YP_006544637.1| - 0.15 11.6 0.1 1.8 8.2 0.0 2.2 1 1 0 1 1 1 0 NACHT domain Methyltransf_11 PF08241.7 gi|397780165|ref|YP_006544638.1| - 1.1e-23 83.5 0.0 1.9e-23 82.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|397780165|ref|YP_006544638.1| - 9.6e-17 60.8 0.0 2.1e-16 59.7 0.0 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|397780165|ref|YP_006544638.1| - 9.4e-16 57.9 0.0 1.3e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397780165|ref|YP_006544638.1| - 1e-13 51.6 0.0 1.9e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397780165|ref|YP_006544638.1| - 1.8e-13 50.3 0.0 2.6e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397780165|ref|YP_006544638.1| - 1.7e-11 44.6 0.0 2.8e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|397780165|ref|YP_006544638.1| - 2.2e-10 40.7 0.0 3.7e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|397780165|ref|YP_006544638.1| - 4.1e-07 30.0 0.1 8.9e-07 28.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|397780165|ref|YP_006544638.1| - 1.4e-05 24.3 0.0 4.3e-05 22.7 0.0 1.7 1 1 1 2 2 2 1 Mycolic acid cyclopropane synthetase N6_N4_Mtase PF01555.13 gi|397780165|ref|YP_006544638.1| - 0.011 15.1 0.0 1.7 8.0 0.0 2.2 2 0 0 2 2 2 0 DNA methylase MetW PF07021.7 gi|397780165|ref|YP_006544638.1| - 0.019 14.3 0.0 0.029 13.7 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|397780165|ref|YP_006544638.1| - 0.022 14.4 0.0 0.046 13.3 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase DUF1072 PF06380.6 gi|397780165|ref|YP_006544638.1| - 0.031 13.9 1.3 0.046 13.3 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1072) AdoMet_MTase PF07757.8 gi|397780165|ref|YP_006544638.1| - 0.057 13.5 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase MTS PF05175.9 gi|397780165|ref|YP_006544638.1| - 0.063 12.6 0.0 1.2 8.4 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase small domain PCMT PF01135.14 gi|397780165|ref|YP_006544638.1| - 0.13 11.7 0.0 0.24 10.9 0.0 1.4 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_20 PF12840.2 gi|397780166|ref|YP_006544639.1| - 9.5e-16 57.3 3.5 1.2e-15 57.0 0.7 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|397780166|ref|YP_006544639.1| - 1.4e-13 50.2 0.8 2.2e-13 49.6 0.2 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|397780166|ref|YP_006544639.1| - 2.4e-09 36.6 0.9 4.3e-09 35.8 0.6 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|397780166|ref|YP_006544639.1| - 2.7e-08 33.0 0.0 4.6e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|397780166|ref|YP_006544639.1| - 3.8e-08 32.8 1.0 3.8e-08 32.8 0.7 1.8 2 0 0 2 2 2 1 MarR family Penicillinase_R PF03965.11 gi|397780166|ref|YP_006544639.1| - 1.3e-06 28.4 0.0 2e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.14 gi|397780166|ref|YP_006544639.1| - 2.2e-06 27.2 0.0 3.4e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|397780166|ref|YP_006544639.1| - 4e-06 27.0 0.5 7.3e-06 26.2 0.3 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|397780166|ref|YP_006544639.1| - 2.9e-05 23.8 0.0 4.4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_10 PF04967.7 gi|397780166|ref|YP_006544639.1| - 0.00019 20.9 0.1 0.00031 20.2 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR PF01047.17 gi|397780166|ref|YP_006544639.1| - 0.00021 20.9 0.1 0.00033 20.3 0.1 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|397780166|ref|YP_006544639.1| - 0.00026 20.8 0.0 0.00039 20.2 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|397780166|ref|YP_006544639.1| - 0.00034 20.1 0.2 0.00052 19.5 0.2 1.2 1 0 0 1 1 1 1 HTH domain PaaX PF07848.7 gi|397780166|ref|YP_006544639.1| - 0.0006 19.7 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein HTH_38 PF13936.1 gi|397780166|ref|YP_006544639.1| - 0.00062 19.2 0.1 0.0012 18.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|397780166|ref|YP_006544639.1| - 0.00089 18.9 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|397780166|ref|YP_006544639.1| - 0.0012 18.8 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_40 PF14493.1 gi|397780166|ref|YP_006544639.1| - 0.0027 17.8 0.0 0.0043 17.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|397780166|ref|YP_006544639.1| - 0.0047 17.0 0.0 0.0086 16.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator LexA_DNA_bind PF01726.11 gi|397780166|ref|YP_006544639.1| - 0.0054 16.2 0.0 0.0084 15.6 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_23 PF13384.1 gi|397780166|ref|YP_006544639.1| - 0.0058 16.2 0.2 0.019 14.5 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain DUF2250 PF10007.4 gi|397780166|ref|YP_006544639.1| - 0.0061 16.4 0.5 0.38 10.6 0.1 2.1 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.1 gi|397780166|ref|YP_006544639.1| - 0.015 15.0 0.0 0.091 12.5 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain VIT1 PF01988.14 gi|397780166|ref|YP_006544639.1| - 0.017 14.6 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 VIT family Sulfolobus_pRN PF05584.6 gi|397780166|ref|YP_006544639.1| - 0.018 15.0 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_29 PF13551.1 gi|397780166|ref|YP_006544639.1| - 0.019 15.0 0.1 0.031 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix RP-C PF03428.8 gi|397780166|ref|YP_006544639.1| - 0.024 14.1 0.0 0.038 13.4 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain GntR PF00392.16 gi|397780166|ref|YP_006544639.1| - 0.024 14.0 0.0 0.058 12.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.1 gi|397780166|ref|YP_006544639.1| - 0.033 13.7 0.1 0.06 12.8 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF742 PF05331.6 gi|397780166|ref|YP_006544639.1| - 0.036 13.6 0.1 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) SpoIIID PF12116.3 gi|397780166|ref|YP_006544639.1| - 0.058 13.3 0.0 0.09 12.7 0.0 1.2 1 0 0 1 1 1 0 Stage III sporulation protein D DUF2513 PF10711.4 gi|397780166|ref|YP_006544639.1| - 0.074 13.1 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_DeoR PF08220.7 gi|397780166|ref|YP_006544639.1| - 0.075 12.5 0.3 0.13 11.8 0.2 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF4423 PF14394.1 gi|397780166|ref|YP_006544639.1| - 0.097 12.2 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_41 PF14502.1 gi|397780166|ref|YP_006544639.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.2 gi|397780166|ref|YP_006544639.1| - 0.13 12.4 0.0 0.3 11.3 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain DUF973 PF06157.6 gi|397780166|ref|YP_006544639.1| - 0.16 10.9 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF2562 PF10814.3 gi|397780166|ref|YP_006544639.1| - 0.47 10.3 2.7 0.97 9.3 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2562) DUF202 PF02656.10 gi|397780166|ref|YP_006544639.1| - 0.78 10.0 4.1 1.5 9.0 0.4 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF202) Serpin PF00079.15 gi|397780168|ref|YP_006544641.1| - 1.4e-118 396.2 0.0 2.2e-118 395.6 0.0 1.3 2 0 0 2 2 2 1 Serpin (serine protease inhibitor) UPF0150 PF03681.10 gi|397780169|ref|YP_006544642.1| - 0.00064 19.3 0.1 0.0011 18.5 0.0 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0150) GSHPx PF00255.14 gi|590000646|ref|YP_009001404.1| - 0.029 13.7 0.0 6.4 6.1 0.0 2.2 2 0 0 2 2 2 0 Glutathione peroxidase DUF2162 PF09930.4 gi|590000646|ref|YP_009001404.1| - 0.74 8.9 4.0 11 5.0 0.5 2.2 2 0 0 2 2 2 0 Predicted transporter (DUF2162) AIRS_C PF02769.17 gi|397780170|ref|YP_006544643.1| - 3e-20 72.7 1.3 5.9e-20 71.8 0.9 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|397780170|ref|YP_006544643.1| - 1.1e-12 47.9 1.7 2.9e-12 46.6 1.2 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain MCM2_N PF12619.3 gi|397780170|ref|YP_006544643.1| - 0.0021 18.0 0.0 0.0032 17.4 0.0 1.3 1 0 0 1 1 1 1 Mini-chromosome maintenance protein 2 Phos_pyr_kin PF08543.7 gi|397780171|ref|YP_006544644.1| - 3.1e-82 275.4 0.1 3.7e-82 275.2 0.1 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|397780171|ref|YP_006544644.1| - 5.3e-07 29.0 0.7 7.1e-07 28.6 0.5 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|397780171|ref|YP_006544644.1| - 0.029 13.6 0.0 0.033 13.4 0.0 1.3 1 0 0 1 1 1 0 Carbohydrate kinase HK PF02110.10 gi|397780171|ref|YP_006544644.1| - 0.064 12.4 1.2 0.14 11.3 0.9 1.6 1 1 0 1 1 1 0 Hydroxyethylthiazole kinase family BetaGal_dom3 PF13363.1 gi|397780171|ref|YP_006544644.1| - 0.12 11.7 0.3 2.3 7.6 0.0 2.3 2 0 0 2 2 2 0 Beta-galactosidase, domain 3 TetR_C PF02909.12 gi|397780171|ref|YP_006544644.1| - 0.13 11.9 0.0 0.64 9.6 0.0 2.0 2 0 0 2 2 2 0 Tetracyclin repressor, C-terminal all-alpha domain HTH_AsnC-type PF13404.1 gi|397780172|ref|YP_006544645.1| - 1.3e-15 56.6 0.1 1.8e-15 56.1 0.1 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|397780172|ref|YP_006544645.1| - 2.4e-13 49.2 0.0 3.9e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|397780172|ref|YP_006544645.1| - 5e-12 45.3 0.0 7.8e-12 44.7 0.0 1.3 1 0 0 1 1 1 1 AsnC family MarR PF01047.17 gi|397780172|ref|YP_006544645.1| - 5.6e-06 25.9 0.0 1.1e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|397780172|ref|YP_006544645.1| - 7.8e-05 22.2 0.0 0.00015 21.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|397780172|ref|YP_006544645.1| - 0.00011 21.9 0.0 0.00024 20.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|397780172|ref|YP_006544645.1| - 0.00012 22.2 0.0 0.00025 21.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|397780172|ref|YP_006544645.1| - 0.0036 16.9 0.1 0.0093 15.5 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_DeoR PF08220.7 gi|397780172|ref|YP_006544645.1| - 0.011 15.3 0.0 0.023 14.2 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|397780172|ref|YP_006544645.1| - 0.011 15.5 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_IclR PF09339.5 gi|397780172|ref|YP_006544645.1| - 0.021 14.4 0.1 0.045 13.3 0.0 1.5 2 0 0 2 2 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|397780172|ref|YP_006544645.1| - 0.024 14.5 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|397780172|ref|YP_006544645.1| - 0.042 13.6 0.1 0.09 12.5 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Linocin_M18 PF04454.7 gi|397780172|ref|YP_006544645.1| - 0.079 11.8 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 Encapsulating protein for peroxidase GntR PF00392.16 gi|397780172|ref|YP_006544645.1| - 0.093 12.1 0.1 3.9 6.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|397780172|ref|YP_006544645.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_CodY PF08222.6 gi|397780172|ref|YP_006544645.1| - 0.14 11.5 0.1 0.33 10.3 0.1 1.7 1 1 0 1 1 1 0 CodY helix-turn-helix domain Bax1-I PF01027.15 gi|397780173|ref|YP_006544646.1| - 0.0013 18.4 13.0 0.0015 18.2 9.0 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 MatE PF01554.13 gi|397780173|ref|YP_006544646.1| - 0.01 15.4 4.3 0.01 15.4 3.0 1.9 1 1 1 2 2 2 0 MatE DUF3159 PF11361.3 gi|397780173|ref|YP_006544646.1| - 0.34 10.3 6.4 0.43 10.0 4.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3159) MerC PF03203.9 gi|397780173|ref|YP_006544646.1| - 0.58 10.5 5.5 0.91 9.9 3.8 1.3 1 1 0 1 1 1 0 MerC mercury resistance protein Pox_I5 PF04713.7 gi|397780173|ref|YP_006544646.1| - 1.1 9.0 7.3 0.54 10.0 0.5 2.1 1 1 1 2 2 2 0 Poxvirus protein I5 DUF3021 PF11457.3 gi|397780173|ref|YP_006544646.1| - 2.8 7.8 10.7 3.3 7.5 7.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3021) DUF2207 PF09972.4 gi|397780173|ref|YP_006544646.1| - 8.5 4.8 9.2 10 4.5 6.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) HEAT_2 PF13646.1 gi|397780174|ref|YP_006544647.1| - 0.09 13.0 0.4 0.15 12.4 0.3 1.3 1 0 0 1 1 1 0 HEAT repeats Zn_ribbon_2 PF12674.2 gi|397780175|ref|YP_006544648.1| - 4.8e-53 177.4 2.4 2.9e-25 88.3 1.1 2.0 2 0 0 2 2 2 2 Putative zinc ribbon domain LIM PF00412.17 gi|397780175|ref|YP_006544648.1| - 0.02 14.9 5.8 0.5 10.4 1.2 2.4 2 0 0 2 2 2 0 LIM domain Auto_anti-p27 PF06677.7 gi|397780175|ref|YP_006544648.1| - 0.18 11.6 0.0 0.18 11.6 0.0 3.4 5 0 0 5 5 5 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|397780175|ref|YP_006544648.1| - 0.49 10.2 13.2 1.2e+02 2.6 0.1 3.7 1 1 1 2 2 2 0 Double zinc ribbon Integrase_Zn PF02022.14 gi|397780175|ref|YP_006544648.1| - 1 8.8 0.0 1 8.8 0.0 3.3 4 0 0 4 4 4 0 Integrase Zinc binding domain zf-ribbon_3 PF13248.1 gi|397780175|ref|YP_006544648.1| - 4.6 6.5 21.1 5.9 6.2 0.2 3.9 3 2 1 4 4 4 0 zinc-ribbon domain DUF217 PF02697.9 gi|397780178|ref|YP_006544651.1| - 0.039 14.2 0.0 0.059 13.6 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized ACR, COG1753 DUF1845 PF08900.6 gi|397780178|ref|YP_006544651.1| - 0.065 12.5 0.0 0.07 12.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1845) Plasmid_stabil PF05016.9 gi|397780179|ref|YP_006544652.1| - 1.4e-09 38.1 0.1 1.7e-09 37.9 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Plasmid_stabil PF05016.9 gi|397780182|ref|YP_006544655.1| - 2.2e-08 34.3 1.2 2.5e-08 34.1 0.8 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|397780182|ref|YP_006544655.1| - 0.0049 16.8 0.1 0.0056 16.6 0.1 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) Nterm_IS4 PF13006.2 gi|397780182|ref|YP_006544655.1| - 0.011 15.7 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 0 Insertion element 4 transposase N-terminal DUF86 PF01934.12 gi|397780184|ref|YP_006544657.1| - 1.8e-20 72.7 0.0 2.2e-20 72.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 AAA_21 PF13304.1 gi|397780187|ref|YP_006544660.1| - 2.7e-28 99.7 12.5 4.2e-28 99.1 8.6 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|397780187|ref|YP_006544660.1| - 7.1e-19 68.1 10.9 4.1e-12 45.8 6.1 2.7 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|397780187|ref|YP_006544660.1| - 5e-10 40.0 1.5 1.1e-09 38.9 1.0 1.6 1 1 0 1 1 1 1 AAA domain DUF2813 PF11398.3 gi|397780187|ref|YP_006544660.1| - 1.4e-07 30.9 0.0 0.0027 16.8 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) SMC_N PF02463.14 gi|397780187|ref|YP_006544660.1| - 0.0019 17.4 0.1 0.061 12.5 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|397780187|ref|YP_006544660.1| - 0.033 14.1 0.0 0.091 12.7 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|397780187|ref|YP_006544660.1| - 0.059 13.6 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 ABC transporter RE_HaeIII PF09556.5 gi|397780187|ref|YP_006544660.1| - 0.07 11.9 2.6 0.11 11.4 0.2 2.1 2 1 0 2 2 2 0 HaeIII restriction endonuclease DUF1040 PF06288.8 gi|397780187|ref|YP_006544660.1| - 0.12 12.6 0.3 0.44 10.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1040) Inhibitor_I78 PF11720.3 gi|397780187|ref|YP_006544660.1| - 0.15 11.8 0.1 11 5.7 0.0 2.5 2 0 0 2 2 2 0 Peptidase inhibitor I78 family AAA_29 PF13555.1 gi|397780187|ref|YP_006544660.1| - 0.16 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF1628 PF07790.6 gi|397780190|ref|YP_006544663.1| - 1.1e-19 70.9 7.7 1.8e-19 70.2 5.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) HSP33 PF01430.14 gi|397780190|ref|YP_006544663.1| - 0.021 13.9 0.1 0.04 13.0 0.1 1.5 1 1 0 1 1 1 0 Hsp33 protein WSS_VP PF12175.3 gi|397780190|ref|YP_006544663.1| - 0.074 12.1 3.0 0.084 11.9 1.6 1.3 1 1 0 1 1 1 0 White spot syndrome virus structural envelope protein VP MacB_PCD PF12704.2 gi|397780190|ref|YP_006544663.1| - 0.94 9.0 7.7 0.47 9.9 3.8 1.5 1 1 1 2 2 2 0 MacB-like periplasmic core domain DUF4131 PF13567.1 gi|397780191|ref|YP_006544664.1| - 0.34 10.2 8.1 0.085 12.2 3.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) AAA_22 PF13401.1 gi|397780195|ref|YP_006544668.1| - 0.062 13.4 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|397780195|ref|YP_006544668.1| - 0.079 13.1 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase HATPase_c_4 PF13749.1 gi|397780197|ref|YP_006544670.1| - 2.4e-22 78.5 0.0 1e-21 76.5 0.0 2.0 2 0 0 2 2 2 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|397780197|ref|YP_006544670.1| - 6.2e-18 65.1 0.0 1.7e-17 63.7 0.0 1.7 2 0 0 2 2 2 1 Divergent AAA domain DUF1815 PF08844.5 gi|397780197|ref|YP_006544670.1| - 0.0082 15.7 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1815) DUF2530 PF10745.4 gi|397780198|ref|YP_006544671.1| - 0.24 11.4 3.0 0.21 11.5 0.5 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF2530) YibE_F PF07907.6 gi|397780198|ref|YP_006544671.1| - 0.53 9.4 4.5 0.084 12.0 0.6 1.5 2 0 0 2 2 2 0 YibE/F-like protein AAA_4 PF04326.9 gi|397780200|ref|YP_006544673.1| - 8.5e-15 54.9 0.0 1.3e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Divergent AAA domain HATPase_c_4 PF13749.1 gi|397780200|ref|YP_006544673.1| - 1.1e-11 44.3 0.0 2.9e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal HATPase_c_4 PF13749.1 gi|397780201|ref|YP_006544674.1| - 2.4e-11 43.2 0.0 1.3e-10 40.9 0.0 2.0 2 0 0 2 2 2 1 ATP-dependent DNA helicase recG C-terminal HTH_27 PF13463.1 gi|397780201|ref|YP_006544674.1| - 0.0089 16.3 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|397780201|ref|YP_006544674.1| - 0.0089 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|397780201|ref|YP_006544674.1| - 0.016 14.8 0.0 0.35 10.5 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF2530 PF10745.4 gi|397780202|ref|YP_006544675.1| - 0.06 13.3 1.2 0.14 12.1 0.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) DUF217 PF02697.9 gi|397780203|ref|YP_006544676.1| - 0.051 13.8 0.0 0.088 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 Plasmid_stabil PF05016.9 gi|397780204|ref|YP_006544677.1| - 0.0008 19.7 0.1 0.00087 19.6 0.1 1.2 1 0 0 1 1 1 1 Plasmid stabilisation system protein DUF3989 PF13150.1 gi|397780204|ref|YP_006544677.1| - 0.013 14.9 0.5 0.21 11.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) DUF805 PF05656.9 gi|397780206|ref|YP_006544679.1| - 0.094 12.5 0.6 0.16 11.8 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF805) NTP_transf_2 PF01909.18 gi|397780208|ref|YP_006544681.1| - 1.2e-09 38.3 0.3 3.6e-09 36.8 0.1 1.8 2 0 0 2 2 2 1 Nucleotidyltransferase domain HTH_20 PF12840.2 gi|397780208|ref|YP_006544681.1| - 0.029 14.1 0.1 0.062 13.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|397780208|ref|YP_006544681.1| - 0.051 13.2 0.2 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.1 gi|397780208|ref|YP_006544681.1| - 0.069 12.5 0.0 0.22 10.9 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|397780208|ref|YP_006544681.1| - 0.088 12.3 0.2 0.2 11.2 0.0 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain LMWSLP_N PF12211.3 gi|397780208|ref|YP_006544681.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Low molecular weight S layer protein N terminal HEPN PF05168.9 gi|397780209|ref|YP_006544682.1| - 4.5e-11 42.6 1.7 6.2e-11 42.2 1.1 1.3 1 1 0 1 1 1 1 HEPN domain DUF4253 PF14062.1 gi|397780209|ref|YP_006544682.1| - 0.026 14.1 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4253) PemK PF02452.12 gi|590000648|ref|YP_006544684.2| - 1.8e-09 37.7 0.0 1.9e-09 37.6 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein EURL PF06937.6 gi|590000649|ref|YP_009001406.1| - 0.038 13.4 0.0 0.063 12.7 0.0 1.3 1 0 0 1 1 1 0 EURL protein NTP_transf_2 PF01909.18 gi|397780212|ref|YP_006544685.1| - 4.3e-09 36.5 0.3 1.1e-08 35.3 0.2 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain TIR-like PF10137.4 gi|397780212|ref|YP_006544685.1| - 0.028 14.0 0.0 0.044 13.4 0.0 1.4 1 1 0 1 1 1 0 Predicted nucleotide-binding protein containing TIR-like domain DUF294 PF03445.8 gi|397780212|ref|YP_006544685.1| - 0.054 13.1 0.0 0.067 12.8 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|397780213|ref|YP_006544686.1| - 1.2e-28 99.3 0.0 1.4e-28 99.0 0.0 1.0 1 0 0 1 1 1 1 HEPN domain DUF4398 PF14346.1 gi|397780213|ref|YP_006544686.1| - 0.19 11.8 1.5 0.2 11.7 0.3 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) PIN PF01850.16 gi|397780214|ref|YP_006544688.1| - 0.00063 20.0 0.0 0.00069 19.9 0.0 1.0 1 0 0 1 1 1 1 PIN domain zf-ribbon_3 PF13248.1 gi|397780218|ref|YP_006544691.1| - 1.2e-06 27.4 1.8 2e-06 26.8 1.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|397780218|ref|YP_006544691.1| - 3.7e-05 23.0 2.3 6.3e-05 22.3 1.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|397780218|ref|YP_006544691.1| - 6.2e-05 22.7 1.2 8.2e-05 22.3 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon TM2 PF05154.11 gi|397780218|ref|YP_006544691.1| - 8.1e-05 22.7 2.7 8.1e-05 22.7 1.8 2.6 2 1 0 2 2 1 1 TM2 domain RNA_POL_M_15KD PF02150.11 gi|397780218|ref|YP_006544691.1| - 0.011 15.3 2.7 0.03 13.9 1.8 1.7 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Grp1_Fun34_YaaH PF01184.14 gi|397780218|ref|YP_006544691.1| - 0.017 14.4 2.6 0.022 14.0 1.8 1.4 1 1 0 1 1 1 0 GPR1/FUN34/yaaH family UPF0547 PF10571.4 gi|397780218|ref|YP_006544691.1| - 0.021 14.5 5.3 0.098 12.3 3.7 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 zf-C4_Topoisom PF01396.14 gi|397780218|ref|YP_006544691.1| - 0.022 14.2 1.6 0.36 10.3 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|397780218|ref|YP_006544691.1| - 0.043 13.7 1.0 3.3 7.7 0.1 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.1 gi|397780218|ref|YP_006544691.1| - 0.046 13.4 1.7 0.36 10.5 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF4234 PF14018.1 gi|397780218|ref|YP_006544691.1| - 0.07 12.8 2.7 0.096 12.4 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4234) Ogr_Delta PF04606.7 gi|397780218|ref|YP_006544691.1| - 0.074 12.7 0.9 1.6 8.4 0.0 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger TF_Zn_Ribbon PF08271.7 gi|397780218|ref|YP_006544691.1| - 0.08 12.2 2.7 0.17 11.2 1.8 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DUF2321 PF10083.4 gi|397780218|ref|YP_006544691.1| - 0.11 11.9 0.3 0.15 11.5 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) Prok-RING_1 PF14446.1 gi|397780218|ref|YP_006544691.1| - 0.15 11.7 0.6 0.24 11.1 0.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-IS66 PF13005.2 gi|397780218|ref|YP_006544691.1| - 0.16 11.9 0.9 17 5.5 0.1 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2189 PF09955.4 gi|397780218|ref|YP_006544691.1| - 0.21 11.5 7.9 0.66 9.9 5.3 2.0 2 1 0 2 2 2 0 Predicted integral membrane protein (DUF2189) DUF4064 PF13273.1 gi|397780218|ref|YP_006544691.1| - 0.24 11.4 4.1 0.45 10.6 2.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) zf-LITAF-like PF10601.4 gi|397780218|ref|YP_006544691.1| - 0.54 10.1 4.4 8 6.4 0.0 3.0 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain Yip1 PF04893.12 gi|397780218|ref|YP_006544691.1| - 1.2 8.6 14.1 1.5 8.2 9.8 1.1 1 0 0 1 1 1 0 Yip1 domain zf-NADH-PPase PF09297.6 gi|397780218|ref|YP_006544691.1| - 2.5 7.6 4.3 26 4.4 3.0 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|397780218|ref|YP_006544691.1| - 3 7.6 6.0 0.43 10.3 0.2 2.1 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain NOB1_Zn_bind PF08772.6 gi|397780218|ref|YP_006544691.1| - 9.2 6.1 5.8 1.4 8.8 0.7 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF2769 PF10967.3 gi|590000650|ref|YP_009001407.1| - 2.4e-11 43.7 13.6 9.9e-11 41.7 8.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2769) Whib PF02467.11 gi|590000650|ref|YP_009001407.1| - 0.011 16.0 2.6 0.011 16.0 1.8 2.2 1 1 1 2 2 2 0 Transcription factor WhiB zf-Paramyx-P PF13008.2 gi|590000650|ref|YP_009001407.1| - 0.5 9.5 11.7 0.085 12.0 1.0 2.6 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein FMN_red PF03358.10 gi|590000651|ref|YP_006544697.2| - 1.3e-26 92.8 0.0 8.6e-26 90.2 0.0 1.9 2 0 0 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|590000651|ref|YP_006544697.2| - 5.9e-15 55.3 0.0 8.7e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|590000651|ref|YP_006544697.2| - 0.015 15.3 0.0 0.2 11.6 0.0 2.1 2 0 0 2 2 2 0 Flavodoxin domain PMT_2 PF13231.1 gi|397780226|ref|YP_006544699.1| - 9.4e-22 77.6 16.0 9.4e-22 77.6 11.1 2.6 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|397780226|ref|YP_006544699.1| - 1.1e-12 47.8 16.3 1.1e-12 47.8 11.3 2.3 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Ribosomal_S10 PF00338.17 gi|397780227|ref|YP_006544700.1| - 3.8e-30 103.6 0.0 4.1e-30 103.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|397780228|ref|YP_006544701.1| - 6.9e-56 188.6 0.0 9.4e-56 188.2 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|397780228|ref|YP_006544701.1| - 4.2e-31 107.0 0.3 1.1e-30 105.7 0.1 1.8 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|397780228|ref|YP_006544701.1| - 2.2e-19 69.3 1.9 2.8e-18 65.8 1.1 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|397780228|ref|YP_006544701.1| - 1.3e-07 31.1 0.6 2.5e-07 30.2 0.4 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|397780228|ref|YP_006544701.1| - 3e-06 27.1 0.0 8.8e-06 25.6 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|397780228|ref|YP_006544701.1| - 7.6e-05 23.1 0.0 0.0012 19.2 0.0 2.6 2 1 0 2 2 2 1 Miro-like protein Gtr1_RagA PF04670.7 gi|397780228|ref|YP_006544701.1| - 0.0037 16.4 0.0 0.052 12.6 0.0 2.0 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region HEPN PF05168.9 gi|397780231|ref|YP_006544704.1| - 1.8e-25 89.1 0.1 2.1e-25 88.8 0.1 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|590000652|ref|YP_006544705.2| - 1.9e-09 37.6 0.1 4.1e-09 36.6 0.1 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|590000652|ref|YP_006544705.2| - 0.11 12.1 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 NIR_SIR PF01077.17 gi|397780233|ref|YP_006544706.1| - 5.2e-23 81.1 0.2 6.7e-23 80.7 0.1 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|397780233|ref|YP_006544706.1| - 6.3e-20 70.5 0.1 4.7e-19 67.7 0.0 2.1 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.22 gi|397780233|ref|YP_006544706.1| - 3.7e-11 42.1 14.1 5.2e-06 25.8 0.5 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|397780233|ref|YP_006544706.1| - 9.1e-09 35.4 21.9 4.1e-07 30.1 7.6 3.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397780233|ref|YP_006544706.1| - 4.1e-08 33.4 9.5 4.1e-08 33.4 6.6 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397780233|ref|YP_006544706.1| - 1.7e-07 30.7 16.4 7.5e-05 22.4 0.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397780233|ref|YP_006544706.1| - 1.9e-06 27.5 13.9 0.00021 21.0 0.2 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397780233|ref|YP_006544706.1| - 3.5e-06 27.6 7.7 0.028 15.1 0.6 3.1 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|397780233|ref|YP_006544706.1| - 5.4e-06 26.3 12.6 0.00077 19.4 0.1 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|397780233|ref|YP_006544706.1| - 1.9e-05 24.4 3.9 5.5e-05 22.9 2.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397780233|ref|YP_006544706.1| - 9.9e-05 22.0 20.9 0.00086 19.0 1.6 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|397780233|ref|YP_006544706.1| - 0.0012 19.1 20.8 0.013 15.8 1.3 3.6 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397780233|ref|YP_006544706.1| - 0.0014 18.4 12.0 0.0014 18.4 8.3 2.6 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|397780233|ref|YP_006544706.1| - 0.0059 16.9 6.5 0.12 12.7 0.2 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|397780233|ref|YP_006544706.1| - 0.011 15.9 2.1 0.011 15.9 1.4 3.5 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|397780233|ref|YP_006544706.1| - 0.018 15.6 16.3 0.061 13.8 0.7 3.4 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|397780233|ref|YP_006544706.1| - 0.063 13.7 22.7 0.094 13.1 2.1 4.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain CobS PF02654.10 gi|397780234|ref|YP_006544707.1| - 6.2e-48 163.4 12.4 7.4e-48 163.1 8.6 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase MG1 PF11974.3 gi|397780234|ref|YP_006544707.1| - 0.019 15.5 0.0 0.038 14.5 0.0 1.5 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain PgpA PF04608.8 gi|397780235|ref|YP_006544708.1| - 1.2e-08 34.8 0.0 1.4e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A DBI_PRT PF02277.12 gi|397780236|ref|YP_006544709.1| - 4.1e-18 65.5 0.1 6.5e-18 64.8 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase GATase PF00117.23 gi|397780237|ref|YP_006544710.1| - 5.2e-26 91.2 0.0 6.1e-26 91.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|397780237|ref|YP_006544710.1| - 1.1e-10 41.3 0.2 3.7e-10 39.6 0.1 1.9 1 1 0 1 1 1 1 Peptidase C26 CxxCxxCC PF03692.10 gi|397780238|ref|YP_006544711.1| - 1.7e-12 47.6 0.3 2.6e-12 47.0 0.2 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DJ-1_PfpI_N PF13587.1 gi|397780238|ref|YP_006544711.1| - 0.029 13.8 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain of DJ-1_PfpI family TraB PF01963.12 gi|397780239|ref|YP_006544712.1| - 8e-46 156.5 0.3 1.2e-45 155.9 0.1 1.4 2 0 0 2 2 2 1 TraB family Nitroreductase PF00881.19 gi|397780240|ref|YP_006544713.1| - 8.5e-31 107.0 0.0 1e-30 106.7 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|397780240|ref|YP_006544713.1| - 0.003 16.7 0.2 1.7 7.8 0.0 2.3 1 1 0 2 2 2 2 Putative TM nitroreductase Fae PF08714.6 gi|397780241|ref|YP_006544714.1| - 4.9e-69 231.0 0.1 1.1e-68 230.0 0.1 1.6 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|397780241|ref|YP_006544714.1| - 3.6e-22 78.8 1.9 2.5e-21 76.1 1.3 2.1 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|397780241|ref|YP_006544714.1| - 0.00044 19.5 2.7 0.26 10.4 0.1 2.2 2 0 0 2 2 2 2 PcrB family Ribul_P_3_epim PF00834.14 gi|397780241|ref|YP_006544714.1| - 0.0025 16.9 1.5 0.033 13.3 0.6 2.7 1 1 1 2 2 2 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|397780241|ref|YP_006544714.1| - 0.09 12.2 1.4 0.094 12.2 0.2 1.6 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.13 gi|397780241|ref|YP_006544714.1| - 0.11 11.2 2.7 0.57 8.9 1.9 1.9 1 1 0 1 1 1 0 FMN-dependent dehydrogenase DUF421 PF04239.7 gi|397780242|ref|YP_006544715.1| - 7.1e-17 60.7 0.0 9.6e-17 60.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF421) Phage-tail_3 PF13550.1 gi|397780242|ref|YP_006544715.1| - 0.1 12.3 0.1 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative phage tail protein AMP-binding PF00501.23 gi|397780243|ref|YP_006544716.1| - 2.9e-102 342.1 0.0 3.7e-102 341.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|397780243|ref|YP_006544716.1| - 3.3e-17 63.2 0.0 9.4e-17 61.7 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.1 gi|397780243|ref|YP_006544716.1| - 0.0012 18.8 0.0 0.0025 17.8 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Inhibitor_I42 PF09394.5 gi|397780244|ref|YP_006544717.1| - 1.3e-25 89.5 0.6 3.4e-25 88.2 0.4 1.7 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 PD40 PF07676.7 gi|397780244|ref|YP_006544717.1| - 0.00026 20.5 12.0 0.21 11.2 0.0 4.8 5 0 0 5 5 5 3 WD40-like Beta Propeller Repeat Amidohydro_1 PF01979.15 gi|397780245|ref|YP_006544718.1| - 1.1e-52 179.7 0.7 1.5e-52 179.3 0.5 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|397780245|ref|YP_006544718.1| - 6.9e-10 39.4 5.5 5.5e-08 33.1 3.8 2.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|397780245|ref|YP_006544718.1| - 2.8e-09 36.7 2.2 4.8e-08 32.6 0.3 2.3 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|397780245|ref|YP_006544718.1| - 2.8e-08 33.4 0.5 1e-07 31.6 0.1 2.2 2 0 0 2 2 2 1 Amidohydrolase A_deaminase PF00962.17 gi|397780245|ref|YP_006544718.1| - 0.021 13.7 0.0 0.049 12.5 0.0 1.5 2 0 0 2 2 2 0 Adenosine/AMP deaminase TatD_DNase PF01026.16 gi|397780245|ref|YP_006544718.1| - 0.11 11.7 0.1 0.17 11.0 0.1 1.3 1 0 0 1 1 1 0 TatD related DNase PNP_UDP_1 PF01048.15 gi|397780246|ref|YP_006544719.1| - 7.4e-34 116.7 0.5 8.4e-34 116.5 0.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily QRPTase_C PF01729.14 gi|397780247|ref|YP_006544720.1| - 2.5e-23 82.4 0.0 3.6e-23 81.9 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|397780247|ref|YP_006544720.1| - 4.8e-10 39.1 0.0 1.1e-09 37.9 0.0 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain YcfA PF07927.7 gi|397780248|ref|YP_006544721.1| - 4.3e-17 61.7 0.0 4.7e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 YcfA-like protein UPF0150 PF03681.10 gi|397780249|ref|YP_006544722.1| - 1e-15 57.0 0.1 1.2e-15 56.8 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DDE_Tnp_1 PF01609.16 gi|397780250|ref|YP_006544723.1| - 9.5e-11 41.6 1.3 1.6e-10 40.9 0.9 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_5 PF13546.1 gi|397780250|ref|YP_006544723.1| - 8.9e-06 24.7 0.1 0.00047 19.0 0.1 2.4 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_2 PF04693.7 gi|397780250|ref|YP_006544723.1| - 0.0022 17.0 0.1 0.0056 15.7 0.0 1.6 2 0 0 2 2 2 1 Archaeal putative transposase ISC1217 Nepo_coat_N PF03689.10 gi|397780250|ref|YP_006544723.1| - 0.061 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Nepovirus coat protein, N-terminal domain FTA2 PF13095.1 gi|397780250|ref|YP_006544723.1| - 0.08 12.5 0.1 0.29 10.7 0.0 1.9 2 0 0 2 2 2 0 Kinetochore Sim4 complex subunit FTA2 HTH_34 PF13601.1 gi|397780252|ref|YP_006544725.1| - 2.4e-16 59.5 0.0 2.9e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|397780252|ref|YP_006544725.1| - 1.8e-08 34.0 0.1 4.7e-08 32.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain PadR PF03551.9 gi|397780252|ref|YP_006544725.1| - 2.1e-06 27.4 0.2 2.7e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|397780252|ref|YP_006544725.1| - 4.3e-06 26.9 0.1 7.2e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|397780252|ref|YP_006544725.1| - 0.00025 20.6 0.0 0.00037 20.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|397780252|ref|YP_006544725.1| - 0.00084 18.6 0.1 0.0013 18.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|397780252|ref|YP_006544725.1| - 0.035 13.7 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|397780252|ref|YP_006544725.1| - 0.044 13.4 0.0 0.062 13.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.6 gi|397780252|ref|YP_006544725.1| - 0.069 12.8 0.2 1.1 8.9 0.1 2.3 1 1 1 2 2 2 0 Winged helix DNA-binding domain (DUF1495) PemK PF02452.12 gi|397780254|ref|YP_006544727.1| - 3e-21 75.6 0.0 3.3e-21 75.5 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein UPF0150 PF03681.10 gi|397780255|ref|YP_006544728.1| - 2.9e-15 55.6 0.1 3.5e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) UPF0150 PF03681.10 gi|397780256|ref|YP_006544729.1| - 9.9e-20 69.9 0.1 1.4e-19 69.4 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Jag_N PF14804.1 gi|397780256|ref|YP_006544729.1| - 0.093 12.7 0.1 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 Jag N-terminus DUF3832 PF12909.2 gi|397780256|ref|YP_006544729.1| - 0.12 12.5 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) DUF3669 PF12417.3 gi|397780258|ref|YP_006544731.1| - 0.015 14.9 0.8 0.034 13.8 0.5 1.6 1 1 0 1 1 1 0 Zinc finger protein DUF553 PF04473.7 gi|397780258|ref|YP_006544731.1| - 0.05 12.8 0.0 0.16 11.2 0.0 1.8 2 1 0 2 2 2 0 Transglutaminase-like domain Acetyltransf_2 PF00797.12 gi|397780258|ref|YP_006544731.1| - 0.082 12.4 0.0 0.12 11.8 0.0 1.4 1 1 0 1 1 1 0 N-acetyltransferase Transglut_core PF01841.14 gi|397780258|ref|YP_006544731.1| - 0.087 13.0 0.0 0.4 10.9 0.0 1.9 2 0 0 2 2 2 0 Transglutaminase-like superfamily AAA_16 PF13191.1 gi|397780259|ref|YP_006544732.1| - 5.9e-10 39.4 0.5 4e-09 36.7 0.1 2.6 2 2 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|397780259|ref|YP_006544732.1| - 4.2e-09 36.4 0.0 7.5e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase MarR_2 PF12802.2 gi|397780259|ref|YP_006544732.1| - 8e-08 31.8 0.3 1.8e-07 30.6 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|397780259|ref|YP_006544732.1| - 7.1e-07 28.5 0.0 1.7e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|397780259|ref|YP_006544732.1| - 7.5e-06 25.5 0.0 1.9e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|397780259|ref|YP_006544732.1| - 4.2e-05 23.3 0.0 0.00012 21.9 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|397780259|ref|YP_006544732.1| - 4.3e-05 23.1 0.0 0.00012 21.7 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AAA_14 PF13173.1 gi|397780259|ref|YP_006544732.1| - 6e-05 22.9 0.0 0.00025 20.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|397780259|ref|YP_006544732.1| - 0.00014 20.6 0.0 0.069 11.7 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|397780259|ref|YP_006544732.1| - 0.00014 21.9 0.0 0.00063 19.8 0.0 2.1 2 0 0 2 2 1 1 AAA domain HTH_20 PF12840.2 gi|397780259|ref|YP_006544732.1| - 0.00016 21.3 0.0 0.0011 18.7 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|397780259|ref|YP_006544732.1| - 0.00037 19.8 0.0 0.0011 18.2 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|397780259|ref|YP_006544732.1| - 0.0014 18.1 0.0 0.0036 16.8 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|397780259|ref|YP_006544732.1| - 0.0014 18.2 0.0 0.013 15.1 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family DUF2791 PF10923.3 gi|397780259|ref|YP_006544732.1| - 0.0016 17.1 0.0 0.0047 15.5 0.0 1.6 1 1 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) HTH_27 PF13463.1 gi|397780259|ref|YP_006544732.1| - 0.0021 18.3 0.0 0.0052 17.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|397780259|ref|YP_006544732.1| - 0.0025 17.3 0.0 0.0083 15.6 0.0 1.9 1 0 0 1 1 1 1 LexA DNA binding domain Zeta_toxin PF06414.7 gi|397780259|ref|YP_006544732.1| - 0.0029 16.7 0.0 0.076 12.0 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin Hpr_kinase_C PF07475.7 gi|397780259|ref|YP_006544732.1| - 0.0032 16.8 0.0 0.0073 15.6 0.0 1.5 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain ABC_tran PF00005.22 gi|397780259|ref|YP_006544732.1| - 0.0034 17.6 0.0 0.27 11.5 0.0 2.9 1 1 1 2 2 2 1 ABC transporter KAP_NTPase PF07693.9 gi|397780259|ref|YP_006544732.1| - 0.014 14.3 0.0 0.018 14.0 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain AAA PF00004.24 gi|397780259|ref|YP_006544732.1| - 0.016 15.4 0.0 0.059 13.5 0.0 2.0 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|397780259|ref|YP_006544732.1| - 0.017 13.8 0.0 0.023 13.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Penicillinase_R PF03965.11 gi|397780259|ref|YP_006544732.1| - 0.024 14.7 0.2 0.36 10.9 0.0 2.6 2 0 0 2 2 2 0 Penicillinase repressor AAA_18 PF13238.1 gi|397780259|ref|YP_006544732.1| - 0.051 13.8 0.1 0.58 10.4 0.0 2.5 1 1 0 1 1 1 0 AAA domain Rrf2 PF02082.15 gi|397780259|ref|YP_006544732.1| - 0.066 13.3 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF790 PF05626.6 gi|397780259|ref|YP_006544732.1| - 0.095 11.2 0.1 0.17 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF790) Guanylate_kin PF00625.16 gi|397780259|ref|YP_006544732.1| - 0.12 11.8 0.2 1.8 7.9 0.0 2.3 1 1 1 2 2 2 0 Guanylate kinase DUF815 PF05673.8 gi|397780259|ref|YP_006544732.1| - 0.13 11.2 0.0 0.34 9.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DUF328 PF03883.9 gi|397780260|ref|YP_006544733.1| - 0.011 15.0 0.0 0.019 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF328) CPSase_L_D3 PF02787.14 gi|397780260|ref|YP_006544733.1| - 0.11 12.2 0.5 3.3 7.5 0.0 2.3 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DUF87 PF01935.12 gi|397780261|ref|YP_006544734.1| - 6.3e-16 58.9 0.0 1.8e-15 57.4 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|397780261|ref|YP_006544734.1| - 1.9e-11 43.9 0.0 3.6e-09 36.5 0.0 3.0 2 1 0 2 2 2 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|397780261|ref|YP_006544734.1| - 0.019 14.4 0.0 0.46 9.9 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family DDDD PF10161.4 gi|397780261|ref|YP_006544734.1| - 0.04 13.5 0.8 0.091 12.4 0.6 1.6 1 0 0 1 1 1 0 Putative mitochondrial precursor protein AAA PF00004.24 gi|397780261|ref|YP_006544734.1| - 0.062 13.5 0.0 0.61 10.2 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|397780261|ref|YP_006544734.1| - 0.15 10.6 0.0 0.67 8.5 0.0 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain NurA PF09376.5 gi|397780263|ref|YP_006544735.1| - 0.00012 21.7 0.0 0.049 13.1 0.0 3.2 2 1 0 2 2 2 2 NurA domain N6_Mtase PF02384.11 gi|397780264|ref|YP_006544737.1| - 2.3e-61 207.6 0.0 3.7e-61 206.9 0.0 1.3 1 1 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|397780264|ref|YP_006544737.1| - 6e-18 65.5 0.2 4.9e-17 62.6 0.0 2.3 2 0 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|397780264|ref|YP_006544737.1| - 2.2e-12 47.0 0.0 5.2e-12 45.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|397780264|ref|YP_006544737.1| - 3.9e-09 36.3 0.0 7.1e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 SEC-C PF02810.10 gi|590000653|ref|YP_009001408.1| - 2.8e-11 42.6 11.6 4.4e-11 42.0 8.1 1.3 1 0 0 1 1 1 1 SEC-C motif DUF955 PF06114.8 gi|590000653|ref|YP_009001408.1| - 0.054 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF955) Methylase_S PF01420.14 gi|397780265|ref|YP_006544738.1| - 6e-40 136.9 0.0 3.1e-22 79.3 0.0 2.3 2 1 0 2 2 2 2 Type I restriction modification DNA specificity domain ResIII PF04851.10 gi|397780266|ref|YP_006544739.1| - 6.9e-31 107.5 0.1 1.3e-30 106.6 0.1 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit EcoEI_R_C PF08463.5 gi|397780266|ref|YP_006544739.1| - 1.1e-23 83.8 0.1 5.3e-23 81.6 0.0 2.3 2 0 0 2 2 2 1 EcoEI R protein C-terminal HSDR_N PF04313.9 gi|397780266|ref|YP_006544739.1| - 3.5e-09 36.6 0.0 7e-08 32.4 0.0 2.7 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) DEAD PF00270.24 gi|397780266|ref|YP_006544739.1| - 3.8e-07 29.7 0.0 7.1e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|397780266|ref|YP_006544739.1| - 5.6e-05 22.9 0.0 0.00026 20.7 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain AAA_19 PF13245.1 gi|397780266|ref|YP_006544739.1| - 0.00042 20.0 0.0 0.0018 17.9 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|397780266|ref|YP_006544739.1| - 0.00067 19.1 0.0 0.0015 18.0 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF2075 PF09848.4 gi|397780266|ref|YP_006544739.1| - 0.0036 16.3 0.0 0.0092 14.9 0.0 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) DUF2726 PF10881.3 gi|397780266|ref|YP_006544739.1| - 0.004 16.7 0.0 0.0096 15.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2726) DUF217 PF02697.9 gi|397780267|ref|YP_006544740.1| - 0.011 15.9 0.1 0.012 15.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 Plasmid_stabil PF05016.9 gi|397780268|ref|YP_006544741.1| - 0.0076 16.6 0.0 0.0096 16.2 0.0 1.2 1 0 0 1 1 1 1 Plasmid stabilisation system protein HTH_34 PF13601.1 gi|397780269|ref|YP_006544742.1| - 1.3e-16 60.4 0.0 1.5e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|397780269|ref|YP_006544742.1| - 1e-07 31.6 0.2 2.3e-07 30.5 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain PadR PF03551.9 gi|397780269|ref|YP_006544742.1| - 6.4e-06 25.8 0.2 9.1e-06 25.3 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|397780269|ref|YP_006544742.1| - 0.00065 19.9 0.1 0.00097 19.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|397780269|ref|YP_006544742.1| - 0.0022 17.6 0.0 0.0041 16.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|397780269|ref|YP_006544742.1| - 0.0024 17.2 0.1 0.0036 16.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|397780269|ref|YP_006544742.1| - 0.016 14.8 0.1 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 MarR family PemK PF02452.12 gi|397780271|ref|YP_006544744.1| - 5.5e-21 74.8 0.0 6e-21 74.7 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein DUF1498 PF07385.7 gi|397780273|ref|YP_006544746.1| - 0.14 11.2 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1498) Death PF00531.17 gi|397780274|ref|YP_006544747.1| - 0.12 12.1 0.2 0.32 10.7 0.0 1.7 2 0 0 2 2 2 0 Death domain PEGA PF08308.6 gi|397780276|ref|YP_006544749.1| - 1.2e-24 85.8 0.8 1.1e-12 47.4 0.2 2.8 3 0 0 3 3 3 2 PEGA domain MarC PF01914.12 gi|397780276|ref|YP_006544749.1| - 0.064 12.3 0.3 0.19 10.8 0.5 1.5 2 0 0 2 2 2 0 MarC family integral membrane protein Phage_AlpA PF05930.7 gi|397780276|ref|YP_006544749.1| - 0.13 11.9 0.0 1 9.1 0.0 2.5 3 0 0 3 3 3 0 Prophage CP4-57 regulatory protein (AlpA) PD40 PF07676.7 gi|397780276|ref|YP_006544749.1| - 0.23 11.1 4.2 8.1 6.2 0.1 4.2 3 0 0 3 3 3 0 WD40-like Beta Propeller Repeat DUF295 PF03478.13 gi|397780276|ref|YP_006544749.1| - 0.74 9.2 6.3 17 4.8 0.2 4.2 5 0 0 5 5 5 0 Protein of unknown function (DUF295) DUF4096 PF13340.1 gi|397780277|ref|YP_006544750.1| - 9.1e-24 83.1 0.0 1.4e-23 82.4 0.0 1.3 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) AHSA1 PF08327.6 gi|397780278|ref|YP_006544751.1| - 4.7e-25 88.0 1.6 5.6e-25 87.8 1.1 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.4 gi|397780278|ref|YP_006544751.1| - 9.6e-06 25.8 0.6 1.3e-05 25.4 0.4 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport MannoseP_isomer PF01050.13 gi|397780279|ref|YP_006544752.1| - 5.6e-63 211.0 0.0 8.3e-63 210.5 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.18 gi|397780279|ref|YP_006544752.1| - 8.4e-55 185.7 0.0 1.2e-54 185.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.6 gi|397780279|ref|YP_006544752.1| - 2.4e-11 42.9 0.1 4.9e-11 41.9 0.1 1.6 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.2 gi|397780279|ref|YP_006544752.1| - 3.9e-08 33.5 0.0 1.4e-07 31.7 0.0 2.0 2 0 0 2 2 2 1 MobA-like NTP transferase domain AraC_binding PF02311.14 gi|397780279|ref|YP_006544752.1| - 0.091 12.4 0.1 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 AraC-like ligand binding domain TPR_1 PF00515.23 gi|397780280|ref|YP_006544753.1| - 2.2e-18 65.0 0.9 6.7e-07 28.6 0.1 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|397780280|ref|YP_006544753.1| - 5.8e-17 61.0 2.2 5.5e-14 51.5 0.9 2.3 2 0 0 2 2 2 2 TPR repeat TPR_12 PF13424.1 gi|397780280|ref|YP_006544753.1| - 1e-16 60.6 12.4 9.5e-09 35.0 1.0 2.7 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|397780280|ref|YP_006544753.1| - 1.7e-16 58.6 5.9 6.5e-07 28.7 0.1 3.8 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|397780280|ref|YP_006544753.1| - 8.1e-13 47.4 1.7 2.6e-05 24.0 0.0 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|397780280|ref|YP_006544753.1| - 2e-11 44.2 9.7 4.1e-07 30.5 1.3 3.1 1 1 1 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|397780280|ref|YP_006544753.1| - 4e-10 38.7 2.6 0.00045 19.8 0.1 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|397780280|ref|YP_006544753.1| - 8.9e-10 37.6 0.0 0.0049 16.5 0.0 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|397780280|ref|YP_006544753.1| - 5.9e-09 35.6 5.7 4e-07 29.7 1.3 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|397780280|ref|YP_006544753.1| - 9e-09 34.9 12.3 9.2e-05 22.2 0.8 3.6 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|397780280|ref|YP_006544753.1| - 7.9e-08 32.2 9.1 0.0021 18.4 0.2 3.7 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_4 PF07721.9 gi|397780280|ref|YP_006544753.1| - 3.1e-05 23.9 6.9 0.071 13.5 0.1 4.4 5 1 0 5 5 4 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|397780280|ref|YP_006544753.1| - 4.2e-05 23.8 3.4 0.0015 18.8 0.3 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|397780280|ref|YP_006544753.1| - 0.0002 20.6 0.4 0.00027 20.2 0.0 1.3 2 0 0 2 2 2 1 Coatomer epsilon subunit Apc3 PF12895.2 gi|397780280|ref|YP_006544753.1| - 0.00039 20.4 0.2 0.014 15.4 0.1 2.1 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_5 PF12688.2 gi|397780280|ref|YP_006544753.1| - 0.0045 17.0 1.3 0.046 13.7 0.2 2.2 1 1 1 2 2 2 2 Tetratrico peptide repeat TPR_6 PF13174.1 gi|397780280|ref|YP_006544753.1| - 0.046 14.1 4.3 1.2 9.7 0.2 3.5 4 1 0 4 4 4 0 Tetratricopeptide repeat MIT PF04212.13 gi|397780280|ref|YP_006544753.1| - 0.077 12.8 0.1 0.25 11.2 0.1 1.9 2 0 0 2 2 1 0 MIT (microtubule interacting and transport) domain Epimerase PF01370.16 gi|397780281|ref|YP_006544754.1| - 2.4e-62 210.4 0.0 2.8e-62 210.2 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|397780281|ref|YP_006544754.1| - 1.2e-21 76.7 0.0 1.6e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|397780281|ref|YP_006544754.1| - 9.5e-17 60.8 0.0 3.4e-16 58.9 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|397780281|ref|YP_006544754.1| - 1.6e-14 53.4 0.0 2.4e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|397780281|ref|YP_006544754.1| - 2.7e-10 39.5 0.0 2.3e-08 33.2 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|397780281|ref|YP_006544754.1| - 4.3e-10 39.8 0.0 6.1e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|397780281|ref|YP_006544754.1| - 6.3e-06 26.1 0.2 1.1e-05 25.4 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|397780281|ref|YP_006544754.1| - 3.4e-05 23.1 0.0 6.6e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|397780281|ref|YP_006544754.1| - 0.00018 21.4 0.0 0.00054 19.9 0.0 1.8 2 0 0 2 2 2 1 TrkA-N domain DUF1188 PF06690.6 gi|397780281|ref|YP_006544754.1| - 0.0016 17.6 0.0 0.0021 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) Epimerase_Csub PF13950.1 gi|397780281|ref|YP_006544754.1| - 0.009 15.9 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit KR PF08659.5 gi|397780281|ref|YP_006544754.1| - 0.033 13.8 0.2 0.061 12.9 0.1 1.5 1 1 0 1 1 1 0 KR domain Saccharop_dh PF03435.13 gi|397780281|ref|YP_006544754.1| - 0.14 11.0 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Phage_integrase PF00589.17 gi|397780282|ref|YP_006544755.1| - 6.9e-38 130.0 0.1 1.1e-37 129.3 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|397780282|ref|YP_006544755.1| - 1.5e-12 47.6 2.4 2.9e-12 46.7 0.3 2.5 2 2 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|397780282|ref|YP_006544755.1| - 6.2e-10 39.0 4.2 1.4e-08 34.7 1.9 2.8 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain MoaE PF02391.12 gi|397780284|ref|YP_006544757.1| - 2.7e-20 72.3 0.3 4.1e-20 71.7 0.2 1.2 1 0 0 1 1 1 1 MoaE protein MobB PF03205.9 gi|397780284|ref|YP_006544757.1| - 7.9e-17 61.2 0.0 1.4e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|397780284|ref|YP_006544757.1| - 0.00012 22.8 1.6 0.33 11.7 0.1 2.5 2 1 0 2 2 2 2 AAA domain MMR_HSR1 PF01926.18 gi|397780284|ref|YP_006544757.1| - 0.0017 18.2 0.0 0.004 17.1 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase DUF1878 PF08963.5 gi|397780284|ref|YP_006544757.1| - 0.027 14.6 0.0 0.081 13.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1878) AAA_22 PF13401.1 gi|397780284|ref|YP_006544757.1| - 0.043 13.9 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain ThiS PF02597.15 gi|397780284|ref|YP_006544757.1| - 0.048 14.0 0.2 1.2 9.5 0.0 2.7 2 2 1 3 3 3 0 ThiS family RNA_helicase PF00910.17 gi|397780284|ref|YP_006544757.1| - 0.055 13.6 0.0 0.14 12.3 0.0 1.7 2 0 0 2 2 2 0 RNA helicase ABC_tran PF00005.22 gi|397780284|ref|YP_006544757.1| - 0.077 13.2 0.1 0.13 12.6 0.1 1.6 1 1 0 1 1 1 0 ABC transporter ABM PF03992.11 gi|397780284|ref|YP_006544757.1| - 0.1 12.6 0.1 0.26 11.3 0.0 1.7 1 1 0 1 1 1 0 Antibiotic biosynthesis monooxygenase FtsK_SpoIIIE PF01580.13 gi|397780284|ref|YP_006544757.1| - 0.12 11.8 0.1 0.26 10.7 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|397780284|ref|YP_006544757.1| - 0.14 12.6 0.1 0.31 11.5 0.1 1.5 1 0 0 1 1 1 0 Miro-like protein PGM_PMM_I PF02878.11 gi|397780285|ref|YP_006544758.1| - 1.6e-39 134.5 0.4 8e-39 132.2 0.0 2.3 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|397780285|ref|YP_006544758.1| - 1e-25 90.0 0.0 3.6e-25 88.2 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|397780285|ref|YP_006544758.1| - 2.5e-20 72.5 0.0 1.4e-19 70.1 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|397780285|ref|YP_006544758.1| - 4e-11 42.7 0.0 1.1e-10 41.3 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DnaB_bind PF10410.4 gi|397780286|ref|YP_006544760.1| - 0.00043 20.2 0.5 0.89 9.5 0.0 4.9 4 0 0 4 4 4 1 DnaB-helicase binding domain of primase Ribosomal_S7 PF00177.16 gi|397780286|ref|YP_006544760.1| - 0.063 12.8 0.1 3.3 7.2 0.0 3.2 3 0 0 3 3 3 0 Ribosomal protein S7p/S5e TPR_12 PF13424.1 gi|397780286|ref|YP_006544760.1| - 0.11 12.4 10.3 2.6 8.0 0.3 4.5 4 1 0 4 4 4 0 Tetratricopeptide repeat Acylphosphatase PF00708.13 gi|397780288|ref|YP_006544761.1| - 1.8e-20 72.8 0.0 2e-20 72.6 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Cas_Cas1 PF01867.11 gi|397780289|ref|YP_006544762.1| - 2.5e-45 154.7 0.0 2.8e-45 154.5 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF4395 PF14340.1 gi|397780289|ref|YP_006544762.1| - 0.15 12.1 0.0 0.34 10.9 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4395) Oxidored_molyb PF00174.14 gi|397780290|ref|YP_006544763.1| - 4.9e-22 78.1 0.0 2.7e-07 30.1 0.0 4.7 2 1 2 4 4 4 4 Oxidoreductase molybdopterin binding domain Kelch_6 PF13964.1 gi|397780291|ref|YP_006544764.1| - 0.081 13.1 0.0 0.32 11.2 0.0 2.0 1 0 0 1 1 1 0 Kelch motif Kelch_1 PF01344.20 gi|397780291|ref|YP_006544764.1| - 0.099 12.1 0.1 0.32 10.5 0.1 1.9 1 0 0 1 1 1 0 Kelch motif DUF3995 PF13160.1 gi|397780291|ref|YP_006544764.1| - 0.44 10.6 6.0 0.08 12.9 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3995) PEGA PF08308.6 gi|397780292|ref|YP_006544765.1| - 1.8e-80 264.7 16.4 1.3e-16 60.1 0.1 7.1 7 0 0 7 7 7 6 PEGA domain CarboxypepD_reg PF13620.1 gi|397780292|ref|YP_006544765.1| - 3.9e-16 58.8 4.0 0.024 14.6 0.1 6.4 5 2 1 6 6 6 5 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|397780292|ref|YP_006544765.1| - 1e-06 28.6 0.0 0.019 15.0 0.0 4.4 4 0 0 4 4 4 2 Domain of unknown function (DUF4480) DUF4399 PF14347.1 gi|397780292|ref|YP_006544765.1| - 0.0054 16.7 0.0 5.5 7.0 0.0 3.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4399) DUF2012 PF09430.5 gi|397780292|ref|YP_006544765.1| - 0.076 12.8 0.0 17 5.2 0.0 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2012) Pyr_redox_3 PF13738.1 gi|397780292|ref|YP_006544765.1| - 0.08 12.9 0.1 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Metallophos PF00149.23 gi|397780293|ref|YP_006544766.1| - 2.1e-17 63.1 0.0 2.9e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|397780293|ref|YP_006544766.1| - 6.8e-07 29.2 0.0 1.2e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PhoD PF09423.5 gi|397780293|ref|YP_006544766.1| - 6.1e-06 25.0 0.0 9.4e-06 24.4 0.0 1.2 1 0 0 1 1 1 1 PhoD-like phosphatase fn3 PF00041.16 gi|397780293|ref|YP_006544766.1| - 0.00057 19.9 0.2 0.0016 18.5 0.1 1.7 1 1 0 1 1 1 1 Fibronectin type III domain Oxidored_molyb PF00174.14 gi|397780295|ref|YP_006544768.1| - 8.2e-14 51.3 0.0 1.3e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain PQQ_3 PF13570.1 gi|397780295|ref|YP_006544768.1| - 0.019 15.2 1.8 0.033 14.4 0.6 1.9 2 0 0 2 2 2 0 PQQ-like domain SBP_bac_11 PF13531.1 gi|397780296|ref|YP_006544769.1| - 8.4e-32 110.6 0.0 1.1e-31 110.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|397780296|ref|YP_006544769.1| - 2.2e-05 24.3 0.0 0.0082 15.9 0.0 2.3 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.2 gi|397780296|ref|YP_006544769.1| - 4.3e-05 23.1 0.0 8.3e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain LysR_substrate PF03466.15 gi|397780296|ref|YP_006544769.1| - 0.11 11.6 0.5 2.2 7.3 0.0 2.5 3 0 0 3 3 3 0 LysR substrate binding domain AMP-binding_C_2 PF14535.1 gi|397780297|ref|YP_006544770.1| - 3.3e-32 110.3 0.0 8.1e-32 109.1 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|397780297|ref|YP_006544770.1| - 5.8e-22 77.6 0.9 2.5e-21 75.5 0.6 1.8 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.8 gi|397780297|ref|YP_006544770.1| - 0.02 13.4 0.0 0.61 8.5 0.0 2.1 2 0 0 2 2 2 0 GH3 auxin-responsive promoter YfhE PF14152.1 gi|397780297|ref|YP_006544770.1| - 0.043 13.7 0.1 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 YfhE-like protein DNA_pol_lambd_f PF10391.4 gi|397780297|ref|YP_006544770.1| - 0.076 12.5 0.0 2.5 7.6 0.0 2.6 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda Peptidase_C42 PF05533.7 gi|397780297|ref|YP_006544770.1| - 0.12 12.2 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 Beet yellows virus-type papain-like endopeptidase C42 AMP-binding_C_2 PF14535.1 gi|397780298|ref|YP_006544771.1| - 1.9e-31 107.9 0.5 4.9e-31 106.6 0.1 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|397780298|ref|YP_006544771.1| - 2.8e-20 72.1 0.1 6e-20 71.0 0.1 1.5 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|397780298|ref|YP_006544771.1| - 7.4e-09 34.7 0.0 0.00034 19.4 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE ACT PF01842.20 gi|397780299|ref|YP_006544772.1| - 1.6e-19 68.9 0.6 3.4e-10 39.1 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|397780299|ref|YP_006544772.1| - 2e-11 43.2 0.1 2.3e-05 23.8 0.0 2.3 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|397780299|ref|YP_006544772.1| - 8.7e-09 35.6 0.1 0.0056 17.0 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|397780299|ref|YP_006544772.1| - 0.00017 21.2 0.0 0.17 11.6 0.0 2.4 2 1 0 2 2 2 2 ACT domain DUF4350 PF14258.1 gi|397780299|ref|YP_006544772.1| - 0.014 15.6 0.1 0.034 14.3 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) GYD PF08734.6 gi|397780299|ref|YP_006544772.1| - 0.014 15.0 0.1 0.081 12.6 0.1 2.1 1 1 2 3 3 3 0 GYD domain P-II PF00543.17 gi|397780300|ref|YP_006544773.1| - 2e-06 28.2 0.2 2.5e-06 27.8 0.1 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II OrfB_IS605 PF01385.14 gi|397780301|ref|YP_006544774.1| - 7.8e-31 107.2 1.2 1e-30 106.8 0.8 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|397780301|ref|YP_006544774.1| - 4.7e-19 67.8 1.1 1.1e-18 66.6 0.7 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|397780301|ref|YP_006544774.1| - 1.3e-10 40.4 0.4 8e-10 37.8 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Acetyltransf_7 PF13508.1 gi|397780302|ref|YP_006544775.1| - 3.4e-08 33.5 0.0 5.7e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|397780302|ref|YP_006544775.1| - 2.4e-05 24.2 0.0 6e-05 23.0 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|397780302|ref|YP_006544775.1| - 3.5e-05 23.9 0.0 6.8e-05 22.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF1538 PF07556.6 gi|397780304|ref|YP_006544777.1| - 5.1e-70 234.8 19.5 6e-70 234.6 13.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) DUF1538 PF07556.6 gi|397780305|ref|YP_006544778.1| - 9.2e-68 227.4 28.6 1.1e-67 227.2 19.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) ACP_syn_III_C PF08541.5 gi|397780305|ref|YP_006544778.1| - 0.36 10.8 0.2 0.36 10.8 0.1 1.9 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF3789 PF12664.2 gi|397780305|ref|YP_006544778.1| - 2.3 7.6 6.1 5 6.5 1.5 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3789) DUF3154 PF11351.3 gi|397780305|ref|YP_006544778.1| - 5.2 6.8 6.2 0.65 9.7 0.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3154) Methyltransf_6 PF03737.10 gi|397780306|ref|YP_006544779.1| - 8.2e-38 129.6 2.8 8.2e-38 129.6 1.9 2.0 2 0 0 2 2 2 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|397780306|ref|YP_006544779.1| - 7.1e-21 74.6 6.9 1.8e-20 73.2 4.3 2.1 2 1 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family HMGL-like PF00682.14 gi|397780306|ref|YP_006544779.1| - 0.00016 21.4 0.4 0.00031 20.4 0.3 1.6 1 1 0 1 1 1 1 HMGL-like His_biosynth PF00977.16 gi|397780306|ref|YP_006544779.1| - 0.00019 20.8 4.8 0.00036 19.8 0.5 2.7 2 1 0 3 3 3 1 Histidine biosynthesis protein PcrB PF01884.12 gi|397780306|ref|YP_006544779.1| - 0.041 13.1 5.9 0.29 10.3 2.0 2.7 2 1 0 2 2 2 0 PcrB family TMP-TENI PF02581.12 gi|397780306|ref|YP_006544779.1| - 0.065 12.3 5.2 0.051 12.7 0.4 2.7 2 1 1 3 3 3 0 Thiamine monophosphate synthase/TENI DUF561 PF04481.7 gi|397780306|ref|YP_006544779.1| - 0.071 12.0 1.5 0.18 10.7 0.4 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF561) Ribul_P_3_epim PF00834.14 gi|397780306|ref|YP_006544779.1| - 0.1 11.7 1.5 0.44 9.6 0.9 2.2 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Trp_syntA PF00290.15 gi|397780306|ref|YP_006544779.1| - 0.32 9.4 2.2 3.1 6.2 0.3 2.3 2 1 0 2 2 2 0 Tryptophan synthase alpha chain Bac_luciferase PF00296.15 gi|397780307|ref|YP_006544780.1| - 2.2e-54 184.6 0.5 3e-54 184.2 0.3 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF2115 PF09888.4 gi|397780308|ref|YP_006544781.1| - 8.8e-51 172.2 0.0 1e-50 172.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) Na_H_antiport_1 PF06965.7 gi|397780309|ref|YP_006544782.1| - 0.022 13.5 0.3 0.025 13.3 0.2 1.1 1 0 0 1 1 1 0 Na+/H+ antiporter 1 Stn1 PF10451.4 gi|397780309|ref|YP_006544782.1| - 0.11 11.2 0.1 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Telomere regulation protein Stn1 Alba PF01918.16 gi|397780310|ref|YP_006544783.1| - 2.6e-17 62.1 0.4 3.3e-17 61.8 0.3 1.1 1 0 0 1 1 1 1 Alba Colicin PF01024.14 gi|397780310|ref|YP_006544783.1| - 0.011 15.2 0.1 0.012 15.2 0.0 1.1 1 0 0 1 1 1 0 Colicin pore forming domain Rpp20 PF12328.3 gi|397780310|ref|YP_006544783.1| - 0.042 13.4 0.4 0.059 13.0 0.2 1.4 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Semialdhyde_dh PF01118.19 gi|397780311|ref|YP_006544784.1| - 6.5e-36 123.3 0.0 1e-35 122.6 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|397780311|ref|YP_006544784.1| - 1.3e-32 113.1 0.0 1.9e-32 112.6 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain NAD_binding_10 PF13460.1 gi|397780311|ref|YP_006544784.1| - 0.0037 17.2 0.1 0.0097 15.9 0.1 1.7 1 1 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|397780311|ref|YP_006544784.1| - 0.0064 16.3 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|397780311|ref|YP_006544784.1| - 0.047 14.2 0.0 0.097 13.2 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase GFO_IDH_MocA PF01408.17 gi|397780311|ref|YP_006544784.1| - 0.066 13.7 0.0 0.12 12.9 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Fer4 PF00037.22 gi|397780312|ref|YP_006544785.1| - 1.9e-08 33.5 4.3 2e-08 33.4 3.0 1.1 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397780312|ref|YP_006544785.1| - 5.3e-07 29.2 4.9 5.8e-07 29.1 3.4 1.1 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397780312|ref|YP_006544785.1| - 1.1e-05 25.0 2.2 1.2e-05 25.0 1.5 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397780312|ref|YP_006544785.1| - 3e-05 23.7 2.8 3e-05 23.7 1.9 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397780312|ref|YP_006544785.1| - 3.7e-05 24.0 2.5 3.9e-05 23.9 1.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397780312|ref|YP_006544785.1| - 5e-05 22.9 4.1 5.6e-05 22.8 2.8 1.1 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|397780312|ref|YP_006544785.1| - 7.1e-05 22.9 2.7 7.1e-05 22.9 1.9 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397780312|ref|YP_006544785.1| - 0.0001 23.0 2.9 0.00012 22.7 2.0 1.1 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|397780312|ref|YP_006544785.1| - 0.0006 20.1 1.5 0.0006 20.1 1.1 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397780312|ref|YP_006544785.1| - 0.00079 19.8 1.6 0.00079 19.8 1.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|397780312|ref|YP_006544785.1| - 0.00093 19.1 1.9 0.00097 19.1 1.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397780312|ref|YP_006544785.1| - 0.0011 19.1 4.1 0.0015 18.6 2.8 1.1 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_11 PF13247.1 gi|397780312|ref|YP_006544785.1| - 0.037 13.8 0.3 0.037 13.8 0.2 1.0 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|397780312|ref|YP_006544785.1| - 0.088 12.4 1.0 0.084 12.4 0.7 1.0 1 0 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|397780312|ref|YP_006544785.1| - 0.18 12.3 6.4 0.25 11.9 4.5 1.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|397780312|ref|YP_006544785.1| - 0.29 11.7 4.9 0.45 11.2 3.4 1.3 1 0 0 1 1 1 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|397780312|ref|YP_006544785.1| - 0.35 11.2 7.8 0.48 10.8 5.0 1.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain DapB_C PF05173.9 gi|397780313|ref|YP_006544786.1| - 2.1e-45 153.7 0.0 3.1e-45 153.1 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|397780313|ref|YP_006544786.1| - 1.3e-26 92.8 0.2 2.3e-26 92.1 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|397780313|ref|YP_006544786.1| - 0.054 13.8 0.1 0.15 12.3 0.1 1.9 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|397780313|ref|YP_006544786.1| - 0.06 13.7 0.1 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|397780313|ref|YP_006544786.1| - 0.07 12.0 0.0 0.092 11.7 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase DUF2277 PF10041.4 gi|397780313|ref|YP_006544786.1| - 0.14 12.1 0.2 0.31 11.0 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2277) DHDPS PF00701.17 gi|397780314|ref|YP_006544787.1| - 3.9e-98 327.6 0.0 4.5e-98 327.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PEP_mutase PF13714.1 gi|397780314|ref|YP_006544787.1| - 0.011 14.9 0.0 0.041 13.0 0.0 1.9 1 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Ribosomal_S17e PF00833.13 gi|397780315|ref|YP_006544788.1| - 7.2e-12 45.1 0.2 7.8e-12 45.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 Aldolase_2 PF10120.4 gi|397780316|ref|YP_006544789.1| - 1.9e-59 199.8 0.0 2.2e-59 199.6 0.0 1.0 1 0 0 1 1 1 1 Putative aldolase HD PF01966.17 gi|397780317|ref|YP_006544790.1| - 4.7e-12 45.9 0.6 6.1e-12 45.6 0.4 1.2 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|397780317|ref|YP_006544790.1| - 0.0015 17.8 0.0 0.0064 15.7 0.0 1.8 1 1 1 2 2 2 1 HDOD domain DUF1469 PF07332.6 gi|397780318|ref|YP_006544791.1| - 1.2 8.8 9.2 1.5 8.5 6.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DNA_primase_lrg PF04104.9 gi|397780319|ref|YP_006544792.1| - 4.8e-30 104.7 0.0 2.3e-29 102.4 0.0 1.8 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit FCD PF07729.7 gi|397780319|ref|YP_006544792.1| - 0.4 11.0 3.6 0.33 11.2 0.2 2.2 2 1 0 2 2 2 0 FCD domain PCNA_N PF00705.13 gi|397780320|ref|YP_006544793.1| - 7.3e-11 41.6 0.6 1.5e-10 40.6 0.2 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|397780320|ref|YP_006544793.1| - 0.0001 22.2 0.0 0.00027 20.8 0.0 1.8 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain FtsJ PF01728.14 gi|397780321|ref|YP_006544794.1| - 4.2e-54 183.2 0.0 4.7e-54 183.1 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.1 gi|397780321|ref|YP_006544794.1| - 4.8e-07 29.6 0.0 0.00046 19.9 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397780321|ref|YP_006544794.1| - 3.7e-05 23.3 0.0 0.23 11.0 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397780321|ref|YP_006544794.1| - 0.00011 22.7 0.1 0.00052 20.5 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltrans_Mon PF14314.1 gi|397780321|ref|YP_006544794.1| - 0.0025 15.7 0.0 0.0032 15.3 0.0 1.1 1 0 0 1 1 1 1 Virus-capping methyltransferase Methyltransf_11 PF08241.7 gi|397780321|ref|YP_006544794.1| - 0.049 14.1 0.0 2.3 8.7 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Radical_SAM PF04055.16 gi|397780322|ref|YP_006544795.1| - 1.4e-30 106.6 0.6 2.1e-30 106.0 0.0 1.6 3 0 0 3 3 3 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|397780322|ref|YP_006544795.1| - 2.5e-24 85.3 0.6 2.5e-24 85.3 0.4 1.6 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|397780322|ref|YP_006544795.1| - 3.4e-09 36.7 0.0 1.1e-08 35.1 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|397780322|ref|YP_006544795.1| - 1.3e-07 31.8 0.0 2.8e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain A2L_zn_ribbon PF08792.5 gi|397780322|ref|YP_006544795.1| - 0.083 12.3 1.1 1 8.8 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain HIG_1_N PF04588.8 gi|397780323|ref|YP_006544796.1| - 0.063 13.0 0.2 0.11 12.2 0.2 1.3 1 0 0 1 1 1 0 Hypoxia induced protein conserved region Peptidase_M20 PF01546.23 gi|397780324|ref|YP_006544797.1| - 9.4e-34 116.5 0.0 2.1e-33 115.4 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|397780324|ref|YP_006544797.1| - 1.6e-15 56.8 0.0 7.8e-15 54.5 0.0 2.0 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|397780324|ref|YP_006544797.1| - 0.00022 20.9 0.0 0.00032 20.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 DUF2029 PF09594.5 gi|397780325|ref|YP_006544798.1| - 6.3e-07 29.1 18.8 6.3e-07 29.1 13.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2029) DUF3938 PF13074.1 gi|397780325|ref|YP_006544798.1| - 8.8 6.2 10.2 1.8 8.4 0.7 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF3938) UPF0104 PF03706.8 gi|397780326|ref|YP_006544799.1| - 3.1e-38 131.7 31.1 3.6e-38 131.5 21.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Methyltransf_11 PF08241.7 gi|397780327|ref|YP_006544800.1| - 1.9e-18 66.7 0.0 3.9e-18 65.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|397780327|ref|YP_006544800.1| - 2.6e-13 50.1 0.0 4.6e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397780327|ref|YP_006544800.1| - 2.2e-12 46.9 0.0 3.1e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397780327|ref|YP_006544800.1| - 4.7e-12 45.7 0.0 7.4e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|397780327|ref|YP_006544800.1| - 4.4e-08 33.1 0.1 2.2e-07 30.8 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397780327|ref|YP_006544800.1| - 2.3e-07 31.1 0.0 4.1e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397780327|ref|YP_006544800.1| - 6.6e-06 26.6 0.0 1.1e-05 25.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|397780327|ref|YP_006544800.1| - 0.0013 18.2 0.0 0.0074 15.7 0.0 2.0 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MetW PF07021.7 gi|397780327|ref|YP_006544800.1| - 0.0034 16.7 0.0 0.0047 16.3 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|397780327|ref|YP_006544800.1| - 0.0038 16.3 0.0 0.0055 15.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Glycos_transf_2 PF00535.21 gi|397780328|ref|YP_006544801.1| - 8.2e-28 97.1 0.0 1.3e-27 96.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|397780328|ref|YP_006544801.1| - 4.2e-11 43.0 0.0 5.1e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|397780328|ref|YP_006544801.1| - 9.6e-09 34.7 0.0 1.6e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|397780328|ref|YP_006544801.1| - 2.8e-05 24.2 0.0 3.6e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_21 PF13506.1 gi|397780328|ref|YP_006544801.1| - 0.00063 19.0 0.1 0.0018 17.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|397780328|ref|YP_006544801.1| - 0.04 14.2 0.0 0.077 13.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Epimerase_2 PF02350.14 gi|397780329|ref|YP_006544802.1| - 1.1e-109 366.3 0.0 1.3e-109 366.1 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|397780329|ref|YP_006544802.1| - 0.024 13.5 0.0 0.041 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.1 gi|397780329|ref|YP_006544802.1| - 0.097 12.8 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glycos_transf_2 PF00535.21 gi|397780330|ref|YP_006544803.1| - 1e-28 100.1 0.0 1.8e-28 99.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.9 gi|397780330|ref|YP_006544803.1| - 5.1e-28 97.3 14.5 9e-28 96.5 10.1 1.4 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.1 gi|397780330|ref|YP_006544803.1| - 4.8e-10 39.6 0.1 9.7e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|397780330|ref|YP_006544803.1| - 0.0048 16.0 0.1 0.0067 15.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 PMT_2 PF13231.1 gi|397780331|ref|YP_006544804.1| - 8.8e-23 80.9 15.1 8.8e-23 80.9 10.5 3.0 2 1 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|397780331|ref|YP_006544804.1| - 5e-12 45.6 18.4 5e-12 45.6 12.7 2.7 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase STT3 PF02516.9 gi|397780331|ref|YP_006544804.1| - 2.1e-07 30.2 33.9 4.8e-07 29.1 23.5 1.5 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Fer4_15 PF13459.1 gi|397780334|ref|YP_006544807.1| - 2e-18 66.6 5.2 2.3e-18 66.4 3.6 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|397780334|ref|YP_006544807.1| - 2.4e-17 63.0 4.5 3.3e-17 62.6 3.1 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|397780334|ref|YP_006544807.1| - 0.00091 19.4 2.7 0.0016 18.6 1.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397780334|ref|YP_006544807.1| - 0.00099 18.8 4.7 0.0019 17.9 3.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397780334|ref|YP_006544807.1| - 0.015 15.6 1.2 0.019 15.2 0.9 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397780334|ref|YP_006544807.1| - 0.017 14.9 4.9 0.048 13.5 3.4 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397780334|ref|YP_006544807.1| - 0.017 14.9 3.2 0.017 14.9 2.2 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|397780334|ref|YP_006544807.1| - 0.044 13.6 3.3 0.12 12.2 2.3 1.8 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|397780334|ref|YP_006544807.1| - 0.073 12.7 3.2 0.073 12.7 2.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397780334|ref|YP_006544807.1| - 0.11 12.9 1.7 0.11 12.9 1.2 2.0 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|397780334|ref|YP_006544807.1| - 0.2 11.7 4.6 0.39 10.7 3.2 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397780334|ref|YP_006544807.1| - 0.7 10.3 3.9 0.78 10.2 0.6 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397780334|ref|YP_006544807.1| - 1.3 8.9 6.2 0.3 11.0 1.2 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|397780334|ref|YP_006544807.1| - 4.1 7.9 6.6 1.3 9.4 1.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain HD PF01966.17 gi|397780336|ref|YP_006544809.1| - 1.3e-12 47.8 0.9 2.3e-12 46.9 0.6 1.4 1 0 0 1 1 1 1 HD domain HD_4 PF13328.1 gi|397780336|ref|YP_006544809.1| - 0.061 13.0 0.5 0.15 11.8 0.3 1.6 1 1 0 1 1 1 0 HD domain ALAD PF00490.16 gi|397780336|ref|YP_006544809.1| - 0.14 10.9 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 Delta-aminolevulinic acid dehydratase Multi_Drug_Res PF00893.14 gi|397780339|ref|YP_006544812.1| - 4.3e-27 94.4 6.1 5.3e-27 94.1 4.2 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein TrbC PF04956.8 gi|397780339|ref|YP_006544812.1| - 0.15 12.1 5.7 0.073 13.0 1.8 2.0 1 1 1 2 2 2 0 TrbC/VIRB2 family EamA PF00892.15 gi|397780339|ref|YP_006544812.1| - 0.42 10.6 11.7 9 6.3 8.3 2.0 1 1 0 1 1 1 0 EamA-like transporter family DUF4064 PF13273.1 gi|397780339|ref|YP_006544812.1| - 2.4 8.3 7.1 3.4 7.8 4.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) Fer4_13 PF13370.1 gi|397780340|ref|YP_006544813.1| - 6.6e-15 55.2 4.4 9.2e-15 54.7 3.1 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|397780340|ref|YP_006544813.1| - 1.1e-14 54.6 5.1 1.4e-14 54.3 3.5 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_10 PF13237.1 gi|397780340|ref|YP_006544813.1| - 0.00038 20.2 4.2 0.00064 19.4 2.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397780340|ref|YP_006544813.1| - 0.0017 18.5 1.8 0.0043 17.2 1.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397780340|ref|YP_006544813.1| - 0.0025 17.6 2.4 0.0025 17.6 1.7 1.9 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.22 gi|397780340|ref|YP_006544813.1| - 0.0029 17.1 2.0 0.0029 17.1 1.4 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397780340|ref|YP_006544813.1| - 0.004 17.5 0.2 0.004 17.5 0.1 2.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|397780340|ref|YP_006544813.1| - 0.0043 16.8 2.8 0.011 15.5 2.0 1.6 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_8 PF13183.1 gi|397780340|ref|YP_006544813.1| - 0.062 13.3 3.7 0.12 12.3 2.6 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397780340|ref|YP_006544813.1| - 0.07 13.0 0.8 0.07 13.0 0.5 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain OsmC PF02566.14 gi|397780340|ref|YP_006544813.1| - 0.072 13.2 0.0 0.076 13.2 0.0 1.2 1 0 0 1 1 1 0 OsmC-like protein Fer4_21 PF14697.1 gi|397780340|ref|YP_006544813.1| - 0.1 12.4 5.6 0.25 11.2 3.9 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397780340|ref|YP_006544813.1| - 0.17 12.2 2.2 0.29 11.5 1.5 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397780340|ref|YP_006544813.1| - 1.3 9.5 6.0 0.62 10.5 1.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Peptidase_M42 PF05343.9 gi|397780341|ref|YP_006544814.1| - 8.3e-101 336.5 0.2 9.6e-101 336.3 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|397780341|ref|YP_006544814.1| - 1.1e-10 41.3 0.0 2.2e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|397780341|ref|YP_006544814.1| - 0.0034 15.9 0.0 0.011 14.2 0.0 1.7 1 1 1 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.12 gi|397780341|ref|YP_006544814.1| - 0.0076 16.0 0.0 0.034 13.8 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M28 Aminotran_1_2 PF00155.16 gi|397780342|ref|YP_006544815.1| - 1.2e-60 205.3 0.0 1.4e-60 205.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|397780342|ref|YP_006544815.1| - 2.7e-06 26.3 0.0 4.3e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|397780342|ref|YP_006544815.1| - 4.7e-06 25.9 0.0 6.3e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|397780342|ref|YP_006544815.1| - 5.9e-06 25.5 0.0 8.9e-06 24.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|397780342|ref|YP_006544815.1| - 0.0032 15.8 0.0 0.0046 15.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SIS PF01380.17 gi|397780343|ref|YP_006544816.1| - 3.2e-15 55.8 0.1 5e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|397780343|ref|YP_006544816.1| - 8.5e-07 28.7 2.7 0.019 14.6 0.1 2.8 2 1 1 3 3 3 2 SIS domain DUF2179 PF10035.4 gi|397780344|ref|YP_006544817.1| - 4.3e-14 51.8 0.1 8.9e-14 50.8 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2179) NTP_transf_2 PF01909.18 gi|397780346|ref|YP_006544819.1| - 1e-06 28.9 0.1 1.1e-06 28.8 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|397780347|ref|YP_006544820.1| - 2.9e-17 62.3 0.1 3.4e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF4145 PF13643.1 gi|397780347|ref|YP_006544820.1| - 0.034 13.9 0.0 0.08 12.8 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) Rubrerythrin PF02915.12 gi|590000654|ref|YP_006544821.2| - 2e-09 37.8 2.9 2.7e-09 37.4 2.0 1.2 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|590000654|ref|YP_006544821.2| - 4.6e-05 23.6 0.7 9e-05 22.6 0.2 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.1 gi|590000654|ref|YP_006544821.2| - 0.0011 18.9 4.1 0.0042 17.0 0.3 2.0 1 1 1 2 2 2 1 Ferritin-like domain Mn_catalase PF05067.7 gi|590000654|ref|YP_006544821.2| - 0.0017 17.1 0.2 0.0018 17.1 0.2 1.0 1 0 0 1 1 1 1 Manganese containing catalase COQ7 PF03232.8 gi|590000654|ref|YP_006544821.2| - 0.024 14.0 0.3 0.028 13.9 0.2 1.2 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 DUF3231 PF11553.3 gi|590000654|ref|YP_006544821.2| - 0.055 12.9 0.0 0.078 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) Ferritin PF00210.19 gi|590000654|ref|YP_006544821.2| - 0.08 12.6 0.6 0.1 12.3 0.4 1.3 1 0 0 1 1 1 0 Ferritin-like domain DUF305 PF03713.8 gi|590000654|ref|YP_006544821.2| - 0.11 12.3 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF305) FMN_red PF03358.10 gi|397780349|ref|YP_006544822.1| - 4.9e-30 104.0 0.0 6.9e-30 103.5 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|397780349|ref|YP_006544822.1| - 1.2e-14 54.3 0.0 2.1e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin-like fold PX PF00787.19 gi|397780349|ref|YP_006544822.1| - 0.0073 16.0 0.0 0.018 14.8 0.0 1.6 2 0 0 2 2 2 1 PX domain FKBP_C PF00254.23 gi|397780351|ref|YP_006544824.1| - 9.2e-14 51.2 0.0 1.2e-13 50.8 0.0 1.2 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF11 PF01345.13 gi|397780351|ref|YP_006544824.1| - 0.046 13.7 0.7 0.046 13.7 0.5 2.7 3 0 0 3 3 3 0 Domain of unknown function DUF11 GreA_GreB PF01272.14 gi|397780351|ref|YP_006544824.1| - 0.15 11.8 0.8 1.1 9.0 0.0 2.6 4 0 0 4 4 4 0 Transcription elongation factor, GreA/GreB, C-term AP_endonuc_2 PF01261.19 gi|397780352|ref|YP_006544825.1| - 6.3e-17 61.5 0.1 8.6e-17 61.1 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel TPR_14 PF13428.1 gi|397780353|ref|YP_006544826.1| - 0.0095 16.4 6.7 0.8 10.5 0.0 4.4 4 1 1 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|397780353|ref|YP_006544826.1| - 0.042 14.1 0.0 0.73 10.2 0.0 3.0 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|397780353|ref|YP_006544826.1| - 0.8 10.4 6.5 16 6.3 0.3 4.0 2 1 1 4 4 4 0 Tetratricopeptide repeat Radical_SAM PF04055.16 gi|590000655|ref|YP_006544827.2| - 6.4e-19 68.7 0.0 8.7e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|590000655|ref|YP_006544827.2| - 4.2e-06 26.7 0.0 6.8e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain MarR_2 PF12802.2 gi|590000655|ref|YP_006544827.2| - 4.4e-06 26.2 0.2 1.2e-05 24.9 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|590000655|ref|YP_006544827.2| - 0.00023 20.9 0.2 0.00065 19.4 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|590000655|ref|YP_006544827.2| - 0.0013 18.3 0.0 0.0024 17.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|590000655|ref|YP_006544827.2| - 0.0024 18.1 0.0 0.005 17.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|590000655|ref|YP_006544827.2| - 0.0024 17.6 0.0 0.0097 15.6 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fer4_12 PF13353.1 gi|590000655|ref|YP_006544827.2| - 0.0049 17.0 0.0 0.0075 16.3 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_24 PF13412.1 gi|590000655|ref|YP_006544827.2| - 0.015 14.6 0.0 0.041 13.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|590000655|ref|YP_006544827.2| - 0.021 14.5 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|590000655|ref|YP_006544827.2| - 0.028 14.0 0.0 0.057 13.0 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.17 gi|590000655|ref|YP_006544827.2| - 0.098 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family HypD PF01924.11 gi|397780355|ref|YP_006544828.1| - 1.6e-135 451.4 0.0 1.9e-135 451.2 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family CDP-OH_P_transf PF01066.16 gi|397780356|ref|YP_006544829.1| - 8.9e-19 67.6 7.5 2.1e-18 66.4 5.2 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase RibD_C PF01872.12 gi|397780357|ref|YP_006544830.1| - 1e-46 159.0 0.0 1.2e-46 158.8 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain PALP PF00291.20 gi|397780357|ref|YP_006544830.1| - 0.029 13.5 0.0 0.042 13.0 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme PcrB PF01884.12 gi|397780357|ref|YP_006544830.1| - 0.05 12.8 0.3 6 6.0 0.0 2.4 2 1 0 2 2 2 0 PcrB family TruD PF01142.13 gi|397780358|ref|YP_006544831.1| - 8.8e-108 360.3 0.0 9.8e-108 360.1 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Fucose_iso_C PF02952.12 gi|397780358|ref|YP_006544831.1| - 0.012 15.0 0.0 0.026 14.0 0.0 1.5 1 0 0 1 1 1 0 L-fucose isomerase, C-terminal domain PTH2 PF01981.11 gi|397780359|ref|YP_006544832.1| - 3.1e-42 142.9 0.1 3.5e-42 142.7 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 2TM PF13239.1 gi|397780360|ref|YP_006544833.1| - 0.043 13.8 0.3 0.043 13.8 0.2 2.5 2 1 0 2 2 2 0 2TM domain Cytochrom_B_N PF00033.14 gi|397780360|ref|YP_006544833.1| - 0.098 12.0 10.5 0.34 10.2 0.1 2.2 1 1 1 2 2 2 0 Cytochrome b(N-terminal)/b6/petB DUF3784 PF12650.2 gi|397780360|ref|YP_006544833.1| - 0.11 12.4 12.3 0.24 11.3 5.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) DUF2975 PF11188.3 gi|397780360|ref|YP_006544833.1| - 0.16 11.6 18.3 0.59 9.8 3.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2975) Fijivirus_P9-2 PF06837.6 gi|397780360|ref|YP_006544833.1| - 0.68 9.0 5.1 1 8.4 0.2 2.4 2 0 0 2 2 2 0 Fijivirus P9-2 protein Tic20 PF09685.5 gi|397780360|ref|YP_006544833.1| - 0.85 9.6 24.4 1.9 8.5 4.1 2.2 2 0 0 2 2 2 0 Tic20-like protein TraP PF07296.6 gi|397780360|ref|YP_006544833.1| - 0.91 8.4 3.4 1.2 8.0 0.7 2.0 2 0 0 2 2 2 0 TraP protein DUF1517 PF07466.6 gi|397780360|ref|YP_006544833.1| - 2 7.3 5.6 1.9 7.3 1.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1517) CobD_Cbib PF03186.8 gi|397780360|ref|YP_006544833.1| - 3.1 6.7 8.5 1.2 8.0 1.3 2.1 1 1 1 2 2 2 0 CobD/Cbib protein DUF4212 PF13937.1 gi|397780360|ref|YP_006544833.1| - 4.3 7.4 15.4 0.29 11.1 1.8 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4212) MgtE PF01769.11 gi|397780361|ref|YP_006544834.1| - 0.39 10.9 5.7 0.45 10.7 3.9 1.1 1 0 0 1 1 1 0 Divalent cation transporter DUF443 PF04276.7 gi|397780361|ref|YP_006544834.1| - 2.1 7.7 4.9 2.1 7.7 3.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF443) PrgI PF12666.2 gi|397780361|ref|YP_006544834.1| - 2.5 8.3 10.3 7.2 6.8 7.1 1.7 1 1 0 1 1 1 0 PrgI family protein DUF2484 PF10658.4 gi|397780361|ref|YP_006544834.1| - 4.1 7.6 9.4 87 3.3 6.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2484) DUF1628 PF07790.6 gi|397780361|ref|YP_006544834.1| - 4.6 8.0 6.2 1.4 9.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) FAD_binding_3 PF01494.14 gi|397780362|ref|YP_006544835.1| - 4.1e-08 32.6 0.0 0.00019 20.6 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|397780362|ref|YP_006544835.1| - 3.2e-07 29.6 0.0 0.0011 18.0 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.19 gi|397780362|ref|YP_006544835.1| - 0.005 15.7 0.1 0.021 13.7 0.0 1.7 1 1 0 2 2 2 1 FAD dependent oxidoreductase Lactamase_B_5 PF14597.1 gi|397780362|ref|YP_006544835.1| - 0.0082 15.5 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily CbiM PF01891.11 gi|397780363|ref|YP_006544836.1| - 4.8e-57 192.8 26.4 5.3e-57 192.7 18.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF2721 PF11026.3 gi|397780363|ref|YP_006544836.1| - 2.2 7.9 8.3 0.62 9.6 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2721) DUF2109 PF09882.4 gi|397780363|ref|YP_006544836.1| - 3.5 7.6 10.2 0.35 10.8 0.8 2.8 2 1 0 2 2 2 0 Predicted membrane protein (DUF2109) PDGLE PF13190.1 gi|397780364|ref|YP_006544837.1| - 3.5e-20 71.4 0.6 4.9e-20 71.0 0.4 1.2 1 0 0 1 1 1 1 PDGLE domain ABC_tran PF00005.22 gi|397780365|ref|YP_006544838.1| - 4.4e-32 111.2 0.0 5.9e-32 110.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780365|ref|YP_006544838.1| - 2.3e-16 60.6 0.0 1.5e-10 41.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397780365|ref|YP_006544838.1| - 4.8e-08 32.4 0.0 7e-07 28.6 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|397780365|ref|YP_006544838.1| - 0.00061 18.9 0.0 0.019 14.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|397780365|ref|YP_006544838.1| - 0.00075 18.9 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|397780365|ref|YP_006544838.1| - 0.0019 18.3 0.0 0.017 15.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|397780365|ref|YP_006544838.1| - 0.0031 17.8 0.0 0.0044 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|397780365|ref|YP_006544838.1| - 0.024 14.5 0.0 0.05 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|397780365|ref|YP_006544838.1| - 0.029 15.1 0.0 0.082 13.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|397780365|ref|YP_006544838.1| - 0.05 12.3 0.0 0.065 11.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_10 PF12846.2 gi|397780365|ref|YP_006544838.1| - 0.05 13.0 0.2 0.69 9.2 0.1 2.2 2 1 0 2 2 2 0 AAA-like domain Mg_chelatase PF01078.16 gi|397780365|ref|YP_006544838.1| - 0.051 12.7 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.1 gi|397780365|ref|YP_006544838.1| - 0.052 13.4 0.0 0.78 9.7 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|397780365|ref|YP_006544838.1| - 0.066 13.1 0.2 0.21 11.5 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|397780365|ref|YP_006544838.1| - 0.07 12.8 0.0 0.14 11.8 0.0 1.5 2 0 0 2 2 2 0 Archaeal ATPase MutS_V PF00488.16 gi|397780365|ref|YP_006544838.1| - 0.075 12.4 0.0 2.5 7.4 0.0 2.1 2 0 0 2 2 2 0 MutS domain V MobB PF03205.9 gi|397780365|ref|YP_006544838.1| - 0.077 12.6 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|397780365|ref|YP_006544838.1| - 0.08 12.5 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|397780365|ref|YP_006544838.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|397780365|ref|YP_006544838.1| - 0.16 11.3 0.0 0.44 9.9 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein CbiQ PF02361.11 gi|397780366|ref|YP_006544839.1| - 2.4e-34 118.8 6.0 3.4e-34 118.3 4.2 1.2 1 0 0 1 1 1 1 Cobalt transport protein MotB_plug PF13677.1 gi|397780366|ref|YP_006544839.1| - 0.035 13.4 0.2 0.083 12.2 0.1 1.6 1 0 0 1 1 1 0 Membrane MotB of proton-channel complex MotA/MotB Ion_trans PF00520.26 gi|397780367|ref|YP_006544840.1| - 3.2e-23 82.0 8.8 3.2e-23 82.0 6.1 1.8 2 0 0 2 2 2 1 Ion transport protein Ion_trans_2 PF07885.11 gi|397780367|ref|YP_006544840.1| - 2.2e-13 49.7 4.3 2.2e-13 49.7 3.0 2.4 2 0 0 2 2 2 1 Ion channel SHOCT PF09851.4 gi|397780367|ref|YP_006544840.1| - 0.0076 15.6 0.1 0.014 14.8 0.1 1.5 1 0 0 1 1 1 1 Short C-terminal domain PKD_channel PF08016.7 gi|397780367|ref|YP_006544840.1| - 0.61 8.4 11.0 3 6.1 7.6 1.9 1 1 0 1 1 1 0 Polycystin cation channel DNA_gyraseB PF00204.20 gi|397780370|ref|YP_006544843.1| - 2.6e-60 202.5 0.1 4.8e-60 201.7 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|397780370|ref|YP_006544843.1| - 1.9e-29 101.2 0.1 3.4e-29 100.3 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|397780370|ref|YP_006544843.1| - 6.1e-27 93.5 0.0 1.6e-26 92.1 0.0 1.8 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|397780370|ref|YP_006544843.1| - 5.7e-16 58.2 0.0 1.3e-15 57.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|397780370|ref|YP_006544843.1| - 0.00015 21.4 0.0 0.00033 20.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.15 gi|397780371|ref|YP_006544844.1| - 4.4e-160 533.1 0.0 5.7e-160 532.8 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|397780371|ref|YP_006544844.1| - 3.4e-60 199.1 16.1 9.5e-13 47.2 0.6 6.5 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DUF2178 PF09946.4 gi|397780372|ref|YP_006544845.1| - 8.4e-12 44.8 5.4 8.4e-12 44.8 3.7 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2178) DUF2298 PF10060.4 gi|397780372|ref|YP_006544845.1| - 0.0034 16.2 3.1 0.0041 16.0 2.2 1.3 1 1 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) DUF202 PF02656.10 gi|397780372|ref|YP_006544845.1| - 0.25 11.5 14.8 2.1 8.6 3.0 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Tetraspannin PF00335.15 gi|397780372|ref|YP_006544845.1| - 5.9 6.0 12.8 42 3.2 8.2 2.4 2 1 0 2 2 2 0 Tetraspanin family HTH_3 PF01381.17 gi|590000656|ref|YP_009001409.1| - 1.4e-18 66.4 0.0 1.6e-18 66.3 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|590000656|ref|YP_009001409.1| - 1.9e-16 59.8 0.0 2.2e-16 59.6 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|590000656|ref|YP_009001409.1| - 3.4e-09 36.7 0.0 3.9e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|590000656|ref|YP_009001409.1| - 2.9e-08 33.7 0.0 3.3e-08 33.5 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.11 gi|590000656|ref|YP_009001409.1| - 6e-05 22.2 0.4 0.0008 18.6 0.2 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_25 PF13413.1 gi|590000656|ref|YP_009001409.1| - 0.00093 18.7 0.1 0.0012 18.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|590000656|ref|YP_009001409.1| - 0.0081 15.7 0.0 0.027 14.1 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_Crp_2 PF13545.1 gi|590000656|ref|YP_009001409.1| - 0.028 14.2 0.0 0.052 13.3 0.0 1.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|590000656|ref|YP_009001409.1| - 0.038 13.6 0.0 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain LemA PF04011.7 gi|590000656|ref|YP_009001409.1| - 0.066 12.3 0.1 0.075 12.1 0.1 1.1 1 0 0 1 1 1 0 LemA family HTH_37 PF13744.1 gi|590000656|ref|YP_009001409.1| - 0.092 12.5 0.1 0.12 12.1 0.1 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain ABC_tran PF00005.22 gi|397780373|ref|YP_006544846.1| - 3.6e-29 101.8 0.0 4.8e-29 101.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780373|ref|YP_006544846.1| - 3.2e-10 40.4 0.0 4e-06 27.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|397780373|ref|YP_006544846.1| - 0.0062 16.0 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain PIN_3 PF13470.1 gi|397780373|ref|YP_006544846.1| - 0.091 13.4 0.0 0.14 12.8 0.0 1.3 1 0 0 1 1 1 0 PIN domain AAA_23 PF13476.1 gi|397780373|ref|YP_006544846.1| - 0.14 12.5 0.0 0.17 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|397780373|ref|YP_006544846.1| - 0.14 11.5 0.9 0.39 10.0 0.5 1.9 1 1 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.2 gi|397780374|ref|YP_006544847.1| - 1.6e-64 217.4 9.0 2.1e-64 217.0 6.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|397780374|ref|YP_006544847.1| - 1.5e-19 70.0 9.6 1.5e-19 70.0 6.7 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|397780374|ref|YP_006544847.1| - 2.3e-08 33.4 13.1 5.3e-08 32.2 9.0 1.7 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|397780374|ref|YP_006544847.1| - 1.5e-07 30.7 20.3 1.5e-07 30.7 14.1 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|397780374|ref|YP_006544847.1| - 2.8e-07 30.0 8.5 2.8e-07 30.0 5.9 2.3 2 0 0 2 2 2 1 ABC-2 family transporter protein Hormone_3 PF00159.13 gi|397780374|ref|YP_006544847.1| - 0.032 14.2 0.1 0.1 12.6 0.0 1.9 1 0 0 1 1 1 0 Pancreatic hormone peptide EMP70 PF02990.11 gi|397780374|ref|YP_006544847.1| - 0.069 11.6 2.1 0.12 10.8 1.5 1.4 1 0 0 1 1 1 0 Endomembrane protein 70 G0-G1_switch_2 PF15103.1 gi|397780374|ref|YP_006544847.1| - 0.46 10.7 5.0 38 4.5 0.1 3.7 4 0 0 4 4 4 0 G0/G1 switch protein 2 DUF4271 PF14093.1 gi|397780374|ref|YP_006544847.1| - 0.53 9.9 10.2 0.14 11.8 4.8 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4271) Tmemb_55A PF09788.4 gi|397780374|ref|YP_006544847.1| - 1 8.4 2.7 7.9 5.5 0.0 2.2 2 0 0 2 2 2 0 Transmembrane protein 55A DUF805 PF05656.9 gi|397780374|ref|YP_006544847.1| - 1.2 8.9 8.7 0.35 10.7 1.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF805) ATPase_gene1 PF09527.5 gi|397780375|ref|YP_006544848.1| - 0.063 13.0 0.4 0.096 12.4 0.2 1.3 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit (ATPase_gene1) OrfB_IS605 PF01385.14 gi|397780376|ref|YP_006544849.1| - 2.9e-48 164.2 0.3 3.7e-48 163.8 0.2 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|397780376|ref|YP_006544849.1| - 1.5e-22 79.0 0.1 3.3e-22 77.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|397780376|ref|YP_006544849.1| - 1.1e-21 75.8 0.8 2.3e-21 74.8 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|397780376|ref|YP_006544849.1| - 0.0083 15.2 0.3 1.2 8.4 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|397780376|ref|YP_006544849.1| - 0.01 15.5 0.9 0.026 14.2 0.6 1.6 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|397780376|ref|YP_006544849.1| - 0.12 12.2 2.5 0.082 12.7 0.4 1.7 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|397780376|ref|YP_006544849.1| - 0.13 11.8 1.7 8.1 6.0 0.2 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|397780376|ref|YP_006544849.1| - 1.1 9.0 3.4 31 4.4 1.0 2.5 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rubredoxin PF00301.15 gi|397780376|ref|YP_006544849.1| - 1.3 8.9 6.2 33 4.4 4.3 2.5 1 1 0 1 1 1 0 Rubredoxin 2TM PF13239.1 gi|397780377|ref|YP_006544850.1| - 0.037 14.0 1.4 0.045 13.8 1.0 1.2 1 0 0 1 1 1 0 2TM domain DUF2105 PF09878.4 gi|397780377|ref|YP_006544850.1| - 0.25 10.8 0.9 0.26 10.8 0.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2105) DUF2628 PF10947.3 gi|397780377|ref|YP_006544850.1| - 0.31 10.8 5.3 0.36 10.6 3.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2628) AmiS_UreI PF02293.10 gi|397780377|ref|YP_006544850.1| - 0.4 10.3 3.4 0.44 10.1 2.3 1.1 1 0 0 1 1 1 0 AmiS/UreI family transporter UPF0047 PF01894.12 gi|397780379|ref|YP_006544852.1| - 1.5e-32 111.8 0.0 1.7e-32 111.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 UPF0147 PF03685.8 gi|397780380|ref|YP_006544853.1| - 7.7e-37 125.0 1.9 8.3e-37 124.9 1.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|397780380|ref|YP_006544853.1| - 0.0089 16.1 0.2 0.59 10.2 0.0 2.1 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0253) M11L PF11099.3 gi|397780380|ref|YP_006544853.1| - 0.11 12.1 0.2 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Apoptosis regulator M11L like Auto_anti-p27 PF06677.7 gi|397780381|ref|YP_006544854.1| - 6.1e-15 54.6 3.0 9.8e-15 54.0 2.1 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) MTBP_C PF14920.1 gi|397780381|ref|YP_006544854.1| - 0.11 12.0 0.2 0.12 11.8 0.1 1.1 1 0 0 1 1 1 0 MDM2-binding ERCC4 PF02732.10 gi|397780382|ref|YP_006544855.1| - 8.5e-21 74.2 0.0 2e-20 72.9 0.0 1.7 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.26 gi|397780382|ref|YP_006544855.1| - 9.9e-20 70.2 0.0 3.3e-19 68.5 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|397780382|ref|YP_006544855.1| - 2.2e-19 69.5 0.0 4.2e-19 68.6 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|397780382|ref|YP_006544855.1| - 1.2e-16 61.1 0.0 2.3e-16 60.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|397780382|ref|YP_006544855.1| - 3.9e-11 42.6 0.0 9.2e-11 41.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|397780382|ref|YP_006544855.1| - 3.7e-10 39.8 0.0 1.4e-09 37.9 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|397780382|ref|YP_006544855.1| - 8.2e-07 28.3 0.1 1.9e-06 27.2 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Helicase_RecD PF05127.9 gi|397780382|ref|YP_006544855.1| - 0.0058 16.2 0.0 0.28 10.8 0.0 2.4 2 0 0 2 2 2 1 Helicase PhoH PF02562.11 gi|397780382|ref|YP_006544855.1| - 0.12 11.6 0.0 0.24 10.5 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein tRNA-synt_2b PF00587.20 gi|397780383|ref|YP_006544856.1| - 1e-58 197.7 0.0 1.4e-58 197.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|397780383|ref|YP_006544856.1| - 9.2e-22 76.8 0.0 1.9e-21 75.8 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain DZR PF12773.2 gi|397780383|ref|YP_006544856.1| - 0.18 11.6 0.1 0.33 10.8 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L32p PF01783.18 gi|397780383|ref|YP_006544856.1| - 0.2 11.8 0.0 0.56 10.4 0.0 1.7 1 0 0 1 1 1 0 Ribosomal L32p protein family zf-ribbon_3 PF13248.1 gi|397780383|ref|YP_006544856.1| - 0.26 10.5 1.1 0.73 9.1 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain HTH_23 PF13384.1 gi|397780384|ref|YP_006544857.1| - 3.2e-07 29.7 0.6 0.00011 21.7 0.0 2.9 4 0 0 4 4 2 1 Homeodomain-like domain HTH_38 PF13936.1 gi|397780384|ref|YP_006544857.1| - 3.8e-05 23.1 0.2 0.00043 19.7 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain GerE PF00196.14 gi|397780384|ref|YP_006544857.1| - 7.2e-05 22.0 0.0 0.00029 20.0 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.1 gi|397780384|ref|YP_006544857.1| - 0.0002 20.6 0.0 0.0045 16.3 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|397780384|ref|YP_006544857.1| - 0.00041 19.7 1.2 0.037 13.4 0.0 2.8 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|397780384|ref|YP_006544857.1| - 0.00044 20.1 0.0 0.0013 18.6 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|397780384|ref|YP_006544857.1| - 0.00072 19.3 0.0 0.0058 16.4 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_Tnp_ISL3 PF13542.1 gi|397780384|ref|YP_006544857.1| - 0.00078 18.5 0.0 0.0019 17.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_Mga PF08280.6 gi|397780384|ref|YP_006544857.1| - 0.00087 19.0 0.8 0.13 11.9 0.0 2.5 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4 PF04545.11 gi|397780384|ref|YP_006544857.1| - 0.0014 17.8 1.1 0.24 10.7 0.0 2.9 3 1 0 3 3 3 1 Sigma-70, region 4 HTH_29 PF13551.1 gi|397780384|ref|YP_006544857.1| - 0.003 17.7 0.1 0.021 14.9 0.0 2.2 2 1 0 2 2 2 1 Winged helix-turn helix MerR PF00376.18 gi|397780384|ref|YP_006544857.1| - 0.003 17.0 0.0 0.0079 15.7 0.0 1.7 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.1 gi|397780384|ref|YP_006544857.1| - 0.0048 16.6 0.1 0.034 13.9 0.0 2.3 2 0 0 2 2 2 1 MerR HTH family regulatory protein HTH_AsnC-type PF13404.1 gi|397780384|ref|YP_006544857.1| - 0.0052 16.2 0.2 0.18 11.3 0.0 2.7 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_10 PF04967.7 gi|397780384|ref|YP_006544857.1| - 0.0063 16.0 0.4 0.11 12.1 0.0 3.1 2 1 1 3 3 3 1 HTH DNA binding domain HTH_40 PF14493.1 gi|397780384|ref|YP_006544857.1| - 0.0091 16.1 0.1 0.07 13.3 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|397780384|ref|YP_006544857.1| - 0.0092 15.6 0.0 0.031 13.9 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RepB PF07506.6 gi|397780384|ref|YP_006544857.1| - 0.011 15.5 0.9 4.9 6.9 0.0 2.6 1 1 0 2 2 2 0 RepB plasmid partitioning protein HTH_Tnp_1 PF01527.15 gi|397780384|ref|YP_006544857.1| - 0.014 15.3 0.0 0.034 14.0 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_3 PF01381.17 gi|397780384|ref|YP_006544857.1| - 0.018 14.8 0.0 0.066 13.0 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix Fe_dep_repress PF01325.14 gi|397780384|ref|YP_006544857.1| - 0.028 14.3 0.1 0.17 11.8 0.0 2.4 2 1 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|397780384|ref|YP_006544857.1| - 0.04 13.5 0.0 0.12 12.0 0.0 1.8 1 0 0 1 1 1 0 HTH domain HTH_17 PF12728.2 gi|397780384|ref|YP_006544857.1| - 0.046 13.9 0.0 0.12 12.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Trp_repressor PF01371.14 gi|397780384|ref|YP_006544857.1| - 0.059 13.2 0.3 0.39 10.6 0.0 2.2 2 0 0 2 2 2 0 Trp repressor protein Phage_terminase PF10668.4 gi|397780384|ref|YP_006544857.1| - 0.085 12.6 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Phage terminase small subunit HTH_20 PF12840.2 gi|397780384|ref|YP_006544857.1| - 0.093 12.5 0.1 0.52 10.1 0.0 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|397780384|ref|YP_006544857.1| - 0.13 11.8 2.2 0.58 9.7 0.0 3.1 5 0 0 5 5 3 0 DeoR-like helix-turn-helix domain Lactamase_B_3 PF13483.1 gi|397780385|ref|YP_006544858.1| - 2.6e-30 105.3 0.0 3.4e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|397780385|ref|YP_006544858.1| - 1.4e-21 76.9 0.0 1.9e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|397780385|ref|YP_006544858.1| - 8.3e-07 28.8 1.6 1.8e-06 27.7 1.1 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily B12-binding PF02310.14 gi|397780386|ref|YP_006544859.1| - 1.2e-19 70.3 0.7 2e-19 69.6 0.5 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|397780386|ref|YP_006544859.1| - 4.2e-11 42.7 0.0 8.8e-11 41.6 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain URO-D PF01208.12 gi|397780387|ref|YP_006544860.1| - 1e-57 195.6 0.0 1.2e-57 195.4 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) HATPase_c PF02518.21 gi|397780388|ref|YP_006544861.1| - 2e-12 46.7 0.2 4e-12 45.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|397780388|ref|YP_006544861.1| - 0.0017 17.8 0.1 0.0046 16.4 0.1 1.7 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain DUF1638 PF07796.6 gi|397780388|ref|YP_006544861.1| - 0.0099 15.5 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Phage_CP76 PF06892.6 gi|397780388|ref|YP_006544861.1| - 0.064 12.5 0.1 0.12 11.6 0.1 1.4 1 0 0 1 1 1 0 Phage regulatory protein CII (CP76) HisKA PF00512.20 gi|397780388|ref|YP_006544861.1| - 0.16 11.9 1.8 0.44 10.5 0.3 2.4 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Phage_integrase PF00589.17 gi|397780389|ref|YP_006544862.1| - 2.4e-20 72.9 0.0 3.8e-20 72.2 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|397780389|ref|YP_006544862.1| - 6.8e-08 32.7 1.0 2.2e-07 31.0 0.1 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.2 gi|397780389|ref|YP_006544862.1| - 0.012 15.4 0.2 0.031 14.0 0.1 1.7 1 1 0 1 1 1 0 Integrase DZR PF12773.2 gi|397780389|ref|YP_006544862.1| - 0.067 13.0 1.0 0.12 12.1 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|397780389|ref|YP_006544862.1| - 0.26 10.5 1.6 0.4 9.9 1.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Phage_int_SAM_1 PF02899.12 gi|397780389|ref|YP_006544862.1| - 0.57 10.3 2.9 0.69 10.1 0.2 2.6 3 1 1 4 4 4 0 Phage integrase, N-terminal SAM-like domain Wbp11 PF09429.5 gi|397780393|ref|YP_006544866.1| - 0.11 12.4 1.1 2.4 8.1 0.4 2.1 2 0 0 2 2 2 0 WW domain binding protein 11 TPR_19 PF14559.1 gi|397780394|ref|YP_006544867.1| - 4.9e-16 58.8 1.1 1.6e-05 25.1 0.1 3.5 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|397780394|ref|YP_006544867.1| - 2.2e-13 49.6 4.2 0.00097 18.7 0.2 3.6 4 0 0 4 4 3 3 TPR repeat TPR_2 PF07719.12 gi|397780394|ref|YP_006544867.1| - 2.8e-10 39.3 15.7 0.48 10.4 0.1 6.4 6 1 0 6 6 6 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|397780394|ref|YP_006544867.1| - 2.8e-10 40.5 9.4 0.00088 19.8 1.2 5.2 3 1 3 6 6 6 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|397780394|ref|YP_006544867.1| - 1.2e-09 38.0 4.4 0.0056 16.5 0.2 4.2 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|397780394|ref|YP_006544867.1| - 1.6e-08 33.7 1.1 0.67 9.9 0.0 6.1 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|397780394|ref|YP_006544867.1| - 4.9e-08 32.9 4.3 4.5 7.9 0.0 6.2 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|397780394|ref|YP_006544867.1| - 7.5e-08 32.3 10.6 3.1 8.6 0.0 6.4 2 2 4 6 6 6 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|397780394|ref|YP_006544867.1| - 8.2e-08 31.5 6.9 1.1 9.0 0.1 5.8 6 0 0 6 6 6 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|397780394|ref|YP_006544867.1| - 3.3e-07 30.3 0.9 0.00093 19.2 0.1 2.4 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.1 gi|397780394|ref|YP_006544867.1| - 1.6e-06 27.4 1.8 3.4 7.6 0.1 5.0 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|397780394|ref|YP_006544867.1| - 1.8e-06 27.8 1.7 1.1 9.9 0.0 5.5 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|397780394|ref|YP_006544867.1| - 1.3e-05 24.9 9.9 5.6 7.0 0.1 5.4 5 0 0 5 5 5 2 Tetratricopeptide repeat PPR PF01535.15 gi|397780394|ref|YP_006544867.1| - 6e-05 22.7 1.7 1.3 9.2 0.0 4.3 4 0 0 4 4 3 2 PPR repeat TPR_5 PF12688.2 gi|397780394|ref|YP_006544867.1| - 0.0051 16.8 0.1 12 5.9 0.0 3.2 2 1 1 3 3 3 0 Tetratrico peptide repeat TPR_15 PF13429.1 gi|397780394|ref|YP_006544867.1| - 0.0064 15.5 0.4 0.068 12.2 0.0 2.3 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|397780394|ref|YP_006544867.1| - 0.019 14.9 0.0 0.051 13.5 0.0 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_3 PF07720.7 gi|397780394|ref|YP_006544867.1| - 0.027 14.2 1.6 17 5.3 0.3 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_17 PF13431.1 gi|397780394|ref|YP_006544867.1| - 0.037 14.2 6.1 0.16 12.2 0.1 4.5 6 0 0 6 6 5 0 Tetratricopeptide repeat TPR_20 PF14561.1 gi|397780394|ref|YP_006544867.1| - 0.047 13.7 0.7 12 6.1 0.0 3.4 2 1 1 3 3 3 0 Tetratricopeptide repeat HrpB1_HrpK PF09613.5 gi|397780394|ref|YP_006544867.1| - 0.11 11.9 0.0 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB1_HrpK) NARP1 PF12569.3 gi|397780394|ref|YP_006544867.1| - 0.12 11.1 0.1 6.2 5.4 0.0 2.5 2 1 1 3 3 3 0 NMDA receptor-regulated protein 1 TPR_9 PF13371.1 gi|397780394|ref|YP_006544867.1| - 2.1 8.2 5.0 0.96 9.3 0.2 2.9 4 1 0 4 4 2 0 Tetratricopeptide repeat Cas_APE2256 PF09651.5 gi|397780396|ref|YP_006544869.1| - 0.00036 20.2 0.0 0.00058 19.5 0.0 1.4 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DDE_Tnp_1 PF01609.16 gi|397780397|ref|YP_006544870.1| - 0.0072 15.8 0.1 0.019 14.5 0.1 1.7 1 1 0 1 1 1 1 Transposase DDE domain DUF4268 PF14088.1 gi|397780398|ref|YP_006544871.1| - 1.1e-25 89.9 3.0 1.8e-25 89.2 2.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4268) DUF2342 PF10103.4 gi|397780398|ref|YP_006544871.1| - 0.069 12.1 0.0 0.12 11.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2342) Fimbrial_K88 PF02432.10 gi|397780399|ref|YP_006544872.1| - 0.03 13.7 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 Fimbrial, major and minor subunit AAA_16 PF13191.1 gi|397780401|ref|YP_006544874.1| - 8.1e-11 42.2 0.1 2.2e-10 40.8 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|397780401|ref|YP_006544874.1| - 1.4e-09 38.1 0.1 6.6e-09 36.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|397780401|ref|YP_006544874.1| - 0.00071 19.2 0.1 0.0018 17.9 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|397780401|ref|YP_006544874.1| - 0.0034 17.5 0.0 0.0075 16.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|397780401|ref|YP_006544874.1| - 0.0048 16.7 0.0 0.28 11.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain Cdc6_C PF09079.6 gi|397780401|ref|YP_006544874.1| - 0.0092 15.6 0.0 0.022 14.4 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal NACHT PF05729.7 gi|397780401|ref|YP_006544874.1| - 0.035 13.7 0.0 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_11 PF13086.1 gi|397780401|ref|YP_006544874.1| - 0.04 13.4 0.0 0.062 12.8 0.0 1.4 2 0 0 2 2 2 0 AAA domain INTS5_N PF14837.1 gi|397780401|ref|YP_006544874.1| - 0.059 12.7 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 Integrator complex subunit 5 N-terminus DUF2075 PF09848.4 gi|397780401|ref|YP_006544874.1| - 0.059 12.3 0.0 0.088 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|397780401|ref|YP_006544874.1| - 0.059 13.2 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|397780401|ref|YP_006544874.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) HEAT_2 PF13646.1 gi|397780403|ref|YP_006544876.1| - 1.5e-09 38.0 0.2 4e-09 36.6 0.1 1.7 2 0 0 2 2 2 1 HEAT repeats DUF328 PF03883.9 gi|397780403|ref|YP_006544876.1| - 1.4e-06 27.8 0.0 2.8e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF328) HEAT_PBS PF03130.11 gi|397780403|ref|YP_006544876.1| - 0.00053 20.2 0.2 0.91 10.1 0.0 2.8 2 0 0 2 2 2 2 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|397780403|ref|YP_006544876.1| - 0.013 15.9 0.6 0.029 14.8 0.1 1.9 2 0 0 2 2 2 0 HEAT-like repeat UvrD_C PF13361.1 gi|397780404|ref|YP_006544877.1| - 3e-13 49.9 0.0 2.8e-07 30.3 0.0 2.1 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain NERD PF08378.6 gi|397780404|ref|YP_006544877.1| - 4.4e-10 39.8 0.0 9.7e-10 38.7 0.0 1.6 1 0 0 1 1 1 1 Nuclease-related domain UvrD_C_2 PF13538.1 gi|397780404|ref|YP_006544877.1| - 4.6e-07 29.9 0.0 9.6e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.16 gi|397780404|ref|YP_006544877.1| - 5.6e-05 22.5 0.0 0.048 12.9 0.0 2.2 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain Viral_helicase1 PF01443.13 gi|397780404|ref|YP_006544877.1| - 6.4e-05 22.5 0.0 0.22 11.0 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.1 gi|397780404|ref|YP_006544877.1| - 0.00097 18.8 0.0 0.0022 17.7 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|397780404|ref|YP_006544877.1| - 0.0026 17.8 0.0 0.0072 16.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|397780404|ref|YP_006544877.1| - 0.0074 15.3 0.0 0.014 14.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_12 PF13087.1 gi|397780404|ref|YP_006544877.1| - 0.024 14.0 0.0 0.18 11.1 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|397780404|ref|YP_006544877.1| - 0.047 13.2 0.0 0.14 11.7 0.0 1.9 2 1 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|397780404|ref|YP_006544877.1| - 0.17 11.0 0.0 1.5 8.0 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein DZR PF12773.2 gi|397780405|ref|YP_006544878.1| - 4.1e-05 23.3 1.1 5.4e-05 22.9 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|397780405|ref|YP_006544878.1| - 0.0026 17.4 0.9 0.0048 16.5 0.6 1.5 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|397780405|ref|YP_006544878.1| - 0.0027 17.1 0.4 0.0056 16.1 0.2 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DUF3800 PF12686.2 gi|397780405|ref|YP_006544878.1| - 0.093 12.3 0.1 0.1 12.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3800) zf-ribbon_3 PF13248.1 gi|397780405|ref|YP_006544878.1| - 0.12 11.5 0.9 0.21 10.8 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|397780405|ref|YP_006544878.1| - 0.13 11.9 1.1 0.2 11.3 0.8 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TrkH PF02386.11 gi|397780406|ref|YP_006544879.1| - 8.1e-47 159.4 24.7 1.9e-46 158.2 11.8 2.2 2 0 0 2 2 2 2 Cation transport protein MAPEG PF01124.13 gi|397780407|ref|YP_006544880.1| - 5.5 6.6 13.1 0.074 12.6 3.6 1.9 2 1 0 2 2 2 0 MAPEG family DUF2109 PF09882.4 gi|590000658|ref|YP_009001411.1| - 1.9e-29 101.4 2.4 2.1e-29 101.2 1.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2109) Yip1 PF04893.12 gi|590000658|ref|YP_009001411.1| - 0.13 11.7 2.5 0.13 11.7 1.7 1.0 1 0 0 1 1 1 0 Yip1 domain Phage_holin_5 PF06946.6 gi|590000658|ref|YP_009001411.1| - 0.16 12.1 0.4 0.19 11.8 0.3 1.3 1 1 0 1 1 1 0 Phage holin DUF4229 PF14012.1 gi|590000658|ref|YP_009001411.1| - 3.8 7.4 7.5 5.1 7.0 5.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) DUF2108 PF09881.4 gi|397780408|ref|YP_006544881.1| - 5.5e-22 77.3 7.9 6.1e-22 77.2 5.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2108) PrgI PF12666.2 gi|397780408|ref|YP_006544881.1| - 4.5 7.4 6.6 24 5.1 4.6 1.9 1 1 0 1 1 1 0 PrgI family protein DUF2107 PF09880.4 gi|397780409|ref|YP_006544882.1| - 8.1e-24 83.3 6.5 9.4e-24 83.1 4.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) DUF4418 PF14387.1 gi|397780409|ref|YP_006544882.1| - 2.1 8.1 6.9 4.7 6.9 4.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) DUF2108 PF09881.4 gi|397780409|ref|YP_006544882.1| - 3.2 7.6 8.8 6.5 6.6 6.1 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2108) Herpes_LMP1 PF05297.6 gi|397780409|ref|YP_006544882.1| - 8.5 5.1 6.4 9 5.0 4.4 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF2106 PF09879.4 gi|397780410|ref|YP_006544883.1| - 1.2e-60 203.2 0.7 1.4e-60 203.0 0.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) DUF2105 PF09878.4 gi|397780411|ref|YP_006544884.1| - 5.5e-66 222.1 11.4 6.3e-66 221.9 7.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2105) NADHdeh_related PF10125.4 gi|397780412|ref|YP_006544885.1| - 3.1e-92 307.6 11.4 3.5e-92 307.5 7.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase I, subunit N related protein DUF4118 PF13493.1 gi|397780413|ref|YP_006544886.1| - 0.031 14.4 6.2 0.04 14.1 4.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) Alph_Pro_TM PF09608.5 gi|397780413|ref|YP_006544886.1| - 0.33 10.4 2.1 0.41 10.1 1.5 1.1 1 0 0 1 1 1 0 Putative transmembrane protein (Alph_Pro_TM) DUF4131 PF13567.1 gi|397780413|ref|YP_006544886.1| - 0.97 8.8 4.4 1.1 8.6 3.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF1469 PF07332.6 gi|397780413|ref|YP_006544886.1| - 1.6 8.5 15.4 1.9 8.2 10.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) FA_desaturase PF00487.19 gi|397780413|ref|YP_006544886.1| - 5.4 6.3 6.3 5.7 6.3 4.4 1.1 1 0 0 1 1 1 0 Fatty acid desaturase Na_Ca_ex PF01699.19 gi|397780415|ref|YP_006544888.1| - 0.00072 19.1 1.0 0.00082 18.9 0.7 1.0 1 0 0 1 1 1 1 Sodium/calcium exchanger protein Flavi_NS2A PF01005.14 gi|397780415|ref|YP_006544888.1| - 0.017 14.3 0.7 0.019 14.2 0.5 1.0 1 0 0 1 1 1 0 Flavivirus non-structural protein NS2A 5TM-5TMR_LYT PF07694.7 gi|397780415|ref|YP_006544888.1| - 0.025 13.8 2.5 0.03 13.6 1.7 1.0 1 0 0 1 1 1 0 5TMR of 5TMR-LYT DUF2127 PF09900.4 gi|397780415|ref|YP_006544888.1| - 0.17 11.9 5.6 1.6 8.7 1.3 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2127) PepSY_TM PF03929.11 gi|397780415|ref|YP_006544888.1| - 2.3 8.7 5.5 26 5.4 0.3 3.0 2 1 1 3 3 3 0 PepSY-associated TM helix DUF1959 PF09218.5 gi|397780416|ref|YP_006544889.1| - 0.0003 20.5 0.0 0.00036 20.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1959) Lin-8 PF03353.10 gi|397780416|ref|YP_006544889.1| - 0.00045 19.6 0.0 0.00054 19.3 0.0 1.1 1 0 0 1 1 1 1 Ras-mediated vulval-induction antagonist HTH_23 PF13384.1 gi|397780416|ref|YP_006544889.1| - 0.08 12.6 0.0 0.56 9.9 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r3 PF04539.11 gi|397780416|ref|YP_006544889.1| - 0.12 12.3 0.1 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_Tnp_ISL3 PF13542.1 gi|397780416|ref|YP_006544889.1| - 0.12 11.5 0.3 0.25 10.5 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Oxidored_q6 PF01058.17 gi|397780417|ref|YP_006544890.1| - 2e-22 79.2 0.2 2.4e-22 78.9 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|397780418|ref|YP_006544891.1| - 2e-29 102.4 0.0 1.2e-24 86.7 0.0 2.3 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|397780418|ref|YP_006544891.1| - 9.5e-11 41.1 2.2 3.4e-09 35.9 0.1 2.5 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Fer4_10 PF13237.1 gi|397780419|ref|YP_006544892.1| - 1.7e-16 59.7 27.3 4.3e-07 29.6 7.8 3.7 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397780419|ref|YP_006544892.1| - 3.3e-16 59.3 33.7 3.5e-08 33.6 5.9 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|397780419|ref|YP_006544892.1| - 6.3e-16 57.2 37.5 2.5e-07 30.0 0.9 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|397780419|ref|YP_006544892.1| - 3.6e-15 54.8 33.8 1e-05 25.1 1.6 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397780419|ref|YP_006544892.1| - 7.6e-14 51.4 29.8 4.2e-07 29.8 8.0 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397780419|ref|YP_006544892.1| - 1.3e-13 51.0 26.6 6.9e-05 23.0 8.6 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397780419|ref|YP_006544892.1| - 8.4e-13 47.9 31.5 0.00011 21.9 10.1 3.9 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397780419|ref|YP_006544892.1| - 1e-12 48.5 21.8 9.1e-07 29.5 4.5 3.3 3 0 0 3 3 3 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|397780419|ref|YP_006544892.1| - 3.9e-11 42.2 39.3 0.00034 20.3 2.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_18 PF13746.1 gi|397780419|ref|YP_006544892.1| - 7.4e-08 32.7 30.4 0.00036 20.8 1.1 4.1 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397780419|ref|YP_006544892.1| - 7.9e-08 32.5 33.2 0.0086 16.4 7.7 3.5 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397780419|ref|YP_006544892.1| - 6.6e-07 29.1 37.6 0.0058 16.8 1.7 4.2 3 1 1 4 4 4 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|397780419|ref|YP_006544892.1| - 2.2e-06 28.0 24.3 0.18 12.4 0.7 4.2 4 0 0 4 4 4 4 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|397780419|ref|YP_006544892.1| - 0.0021 18.4 33.1 0.072 13.4 1.3 4.2 4 0 0 4 4 4 4 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|397780419|ref|YP_006544892.1| - 0.0035 17.8 5.8 0.0035 17.8 4.0 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Molydop_binding PF01568.16 gi|397780420|ref|YP_006544893.1| - 1.9e-19 69.4 0.0 2.4e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF4261 PF14080.1 gi|397780420|ref|YP_006544893.1| - 0.04 13.7 0.4 0.36 10.6 0.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4261) Molybdopterin PF00384.17 gi|397780421|ref|YP_006544894.1| - 8.3e-10 37.9 0.0 1.7e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.11 gi|397780421|ref|YP_006544894.1| - 0.069 12.9 2.2 0.17 11.7 1.5 1.7 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Amidohydro_3 PF07969.6 gi|397780422|ref|YP_006544895.1| - 2.8e-51 175.0 0.1 3.5e-51 174.6 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|397780422|ref|YP_006544895.1| - 3.4e-09 36.3 0.0 1.1e-08 34.7 0.0 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|397780422|ref|YP_006544895.1| - 0.00068 19.7 0.4 0.054 13.5 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|397780422|ref|YP_006544895.1| - 0.0064 16.1 0.2 0.066 12.8 0.1 2.5 1 1 0 1 1 1 1 Amidohydrolase family GXGXG PF01493.14 gi|397780423|ref|YP_006544896.1| - 1e-35 122.6 30.9 3.6e-31 107.7 13.5 1.8 1 1 1 2 2 2 2 GXGXG motif MinC_C PF03775.11 gi|397780423|ref|YP_006544896.1| - 0.59 9.7 2.9 8.7 6.0 0.0 2.8 2 1 1 3 3 3 0 Septum formation inhibitor MinC, C-terminal domain NOB1_Zn_bind PF08772.6 gi|397780424|ref|YP_006544897.1| - 0.00097 18.9 0.1 0.0013 18.4 0.1 1.3 1 1 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|397780424|ref|YP_006544897.1| - 0.0024 16.9 0.1 0.0047 16.0 0.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DUF1922 PF09082.5 gi|397780424|ref|YP_006544897.1| - 0.0032 17.5 0.2 0.0039 17.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) Ribosomal_S27e PF01667.12 gi|397780424|ref|YP_006544897.1| - 0.021 14.3 0.1 0.037 13.5 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|397780424|ref|YP_006544897.1| - 0.089 12.1 0.4 0.17 11.1 0.3 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.2 gi|397780424|ref|YP_006544897.1| - 0.092 12.5 1.5 0.36 10.6 0.8 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|397780424|ref|YP_006544897.1| - 0.1 12.0 0.1 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-ISL3 PF14690.1 gi|397780424|ref|YP_006544897.1| - 0.14 12.1 4.1 0.42 10.6 2.8 2.0 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_KTR PF14205.1 gi|397780424|ref|YP_006544897.1| - 0.22 10.9 1.7 2.2 7.7 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR zf-Sec23_Sec24 PF04810.10 gi|397780424|ref|YP_006544897.1| - 2.6 7.6 5.5 13 5.4 3.8 1.9 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger DAO PF01266.19 gi|397780425|ref|YP_006544898.1| - 3.8e-48 164.2 1.8 4.8e-48 163.8 1.3 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.21 gi|397780425|ref|YP_006544898.1| - 1.7e-17 62.7 0.2 5.6e-17 61.0 0.1 1.7 2 0 0 2 2 2 1 Rieske [2Fe-2S] domain NAD_binding_8 PF13450.1 gi|397780425|ref|YP_006544898.1| - 4.6e-06 26.5 0.8 1.9e-05 24.5 0.6 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|397780425|ref|YP_006544898.1| - 6.6e-05 22.1 0.1 9.1e-05 21.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|397780425|ref|YP_006544898.1| - 0.00014 21.8 0.1 0.0004 20.3 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|397780425|ref|YP_006544898.1| - 0.00036 19.7 0.1 0.00057 19.0 0.0 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.19 gi|397780425|ref|YP_006544898.1| - 0.00059 18.7 0.9 0.0013 17.7 0.6 1.5 1 0 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|397780425|ref|YP_006544898.1| - 0.0016 17.1 1.3 0.0023 16.6 0.9 1.2 1 0 0 1 1 1 1 Tryptophan halogenase FAD_oxidored PF12831.2 gi|397780425|ref|YP_006544898.1| - 0.0016 17.6 1.2 0.004 16.2 0.5 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|397780425|ref|YP_006544898.1| - 0.0021 18.1 0.9 0.02 14.9 0.6 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|397780425|ref|YP_006544898.1| - 0.0022 16.5 0.0 0.011 14.2 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|397780425|ref|YP_006544898.1| - 0.004 17.5 0.7 0.0079 16.5 0.5 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|397780425|ref|YP_006544898.1| - 0.011 15.4 0.5 0.015 14.9 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|397780425|ref|YP_006544898.1| - 0.027 13.3 0.8 0.048 12.5 0.6 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|397780425|ref|YP_006544898.1| - 0.099 12.4 0.9 17 5.1 0.0 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding Amino_oxidase PF01593.19 gi|397780425|ref|YP_006544898.1| - 0.14 11.2 0.6 0.77 8.7 0.1 2.2 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|397780425|ref|YP_006544898.1| - 0.18 11.1 0.3 0.27 10.5 0.2 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.19 gi|590000659|ref|YP_006544899.2| - 3.4e-43 147.9 1.0 4.2e-43 147.6 0.7 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.21 gi|590000659|ref|YP_006544899.2| - 2.9e-14 52.3 0.2 5.7e-14 51.4 0.2 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain FAD_binding_2 PF00890.19 gi|590000659|ref|YP_006544899.2| - 1.4e-06 27.4 0.0 6.7e-06 25.2 0.0 1.9 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|590000659|ref|YP_006544899.2| - 3.7e-05 23.6 1.0 0.00011 22.1 0.7 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|590000659|ref|YP_006544899.2| - 0.00015 21.6 0.0 0.00026 20.9 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|590000659|ref|YP_006544899.2| - 0.00026 20.0 0.4 0.00039 19.3 0.3 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|590000659|ref|YP_006544899.2| - 0.00053 19.1 0.6 0.001 18.2 0.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|590000659|ref|YP_006544899.2| - 0.00065 18.8 0.9 0.0011 18.0 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|590000659|ref|YP_006544899.2| - 0.0037 15.9 0.1 0.0054 15.4 0.1 1.2 1 0 0 1 1 1 1 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|590000659|ref|YP_006544899.2| - 0.0065 16.5 0.0 0.02 14.9 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|590000659|ref|YP_006544899.2| - 0.0075 14.7 0.6 0.013 13.9 0.4 1.3 1 0 0 1 1 1 1 HI0933-like protein 3HCDH_N PF02737.13 gi|590000659|ref|YP_006544899.2| - 0.0097 15.5 0.1 0.014 15.0 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|590000659|ref|YP_006544899.2| - 0.013 14.5 0.2 0.023 13.8 0.1 1.3 1 0 0 1 1 1 0 Thi4 family Lycopene_cycl PF05834.7 gi|590000659|ref|YP_006544899.2| - 0.036 12.9 0.2 0.058 12.2 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|590000659|ref|YP_006544899.2| - 0.041 13.4 0.1 0.095 12.2 0.0 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Glycos_transf_1 PF00534.15 gi|397780427|ref|YP_006544900.1| - 1.9e-27 95.7 0.0 3.3e-27 94.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|397780427|ref|YP_006544900.1| - 1e-12 48.1 0.0 3.1e-12 46.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397780427|ref|YP_006544900.1| - 3.6e-12 46.5 0.0 1.2e-11 44.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 HTH_17 PF12728.2 gi|397780429|ref|YP_006544902.1| - 5.4e-11 42.5 0.0 9.4e-11 41.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain PIN_4 PF13638.1 gi|397780431|ref|YP_006544904.1| - 0.011 15.7 0.0 0.02 14.9 0.0 1.5 1 1 0 1 1 1 0 PIN domain HAD_2 PF13419.1 gi|397780432|ref|YP_006544905.1| - 1.4e-25 90.4 0.0 1.8e-25 90.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|397780432|ref|YP_006544905.1| - 1.2e-17 65.0 0.1 4.7e-16 59.8 0.0 2.1 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|397780432|ref|YP_006544905.1| - 1.3e-11 44.0 0.0 2.4e-11 43.1 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|397780432|ref|YP_006544905.1| - 4.9e-05 23.5 0.0 7.3e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|397780432|ref|YP_006544905.1| - 0.017 14.9 0.0 0.04 13.8 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF2099 PF09872.4 gi|397780433|ref|YP_006544906.1| - 4.1e-104 347.1 1.0 4.7e-104 346.9 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) NAD_Gly3P_dh_C PF07479.9 gi|397780433|ref|YP_006544906.1| - 0.0071 16.0 0.5 0.011 15.4 0.4 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus zf-ribbon_3 PF13248.1 gi|397780434|ref|YP_006544907.1| - 0.0071 15.5 1.6 0.024 13.8 1.1 1.9 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|397780434|ref|YP_006544907.1| - 0.059 13.2 0.5 0.15 11.8 0.2 1.8 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|397780434|ref|YP_006544907.1| - 0.063 13.2 3.5 0.21 11.5 2.4 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF523 PF04463.7 gi|397780434|ref|YP_006544907.1| - 0.075 12.7 0.4 0.11 12.3 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF523) zinc_ribbon_2 PF13240.1 gi|397780434|ref|YP_006544907.1| - 0.085 12.3 0.3 0.35 10.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|397780434|ref|YP_006544907.1| - 0.099 12.3 0.9 0.21 11.3 0.1 1.9 2 0 0 2 2 2 0 Nudix N-terminal DNA_ligase_ZBD PF03119.11 gi|397780434|ref|YP_006544907.1| - 0.11 12.2 0.9 0.27 10.9 0.6 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF2256 PF10013.4 gi|397780434|ref|YP_006544907.1| - 2.2 8.1 4.1 2.2 8.1 0.1 2.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) UPF0547 PF10571.4 gi|397780434|ref|YP_006544907.1| - 3.1 7.5 8.8 0.43 10.3 0.8 2.4 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|397780434|ref|YP_006544907.1| - 5.7 6.5 6.8 0.38 10.2 0.5 2.2 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DUF1624 PF07786.7 gi|397780435|ref|YP_006544908.1| - 4.2e-71 238.8 15.2 4.9e-71 238.6 10.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.17 gi|397780435|ref|YP_006544908.1| - 6.4e-06 25.2 28.3 0.028 13.2 4.1 2.4 1 1 1 2 2 2 2 Acyltransferase family OpgC_C PF10129.4 gi|397780435|ref|YP_006544908.1| - 3.4e-05 22.6 20.4 0.048 12.3 11.2 2.7 1 1 1 2 2 2 2 OpgC protein Adenine_deam_C PF13382.1 gi|397780436|ref|YP_006544909.1| - 1e-50 171.2 0.0 1.6e-50 170.6 0.0 1.3 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|397780436|ref|YP_006544909.1| - 2.1e-29 103.2 0.3 2.9e-28 99.4 0.2 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|397780436|ref|YP_006544909.1| - 2.6e-16 60.4 11.5 1.6e-15 57.8 4.6 2.8 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|397780436|ref|YP_006544909.1| - 1.7e-10 40.5 1.3 3.8e-10 39.4 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|397780436|ref|YP_006544909.1| - 5.8e-09 35.6 0.4 1.2e-05 24.7 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family YtkA PF13115.1 gi|397780437|ref|YP_006544910.1| - 0.13 12.6 0.2 0.2 12.0 0.1 1.3 1 1 0 1 1 1 0 YtkA-like OrfB_IS605 PF01385.14 gi|397780438|ref|YP_006544911.1| - 7.7e-30 103.9 2.5 1.1e-29 103.4 1.8 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|397780438|ref|YP_006544911.1| - 6.5e-24 83.3 0.1 1.4e-23 82.3 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|397780438|ref|YP_006544911.1| - 6.2e-10 38.2 0.0 1.4e-09 37.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|397780438|ref|YP_006544911.1| - 0.0027 16.8 0.5 0.0071 15.5 0.4 1.7 1 1 0 1 1 1 1 zinc-ribbon domain DUF4404 PF14357.1 gi|397780438|ref|YP_006544911.1| - 0.0086 16.4 0.6 1.1 9.6 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4404) zinc_ribbon_2 PF13240.1 gi|397780438|ref|YP_006544911.1| - 0.017 14.6 0.8 0.058 12.8 0.6 1.9 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|397780438|ref|YP_006544911.1| - 0.023 14.4 1.9 0.046 13.4 1.3 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-C2HC5 PF06221.8 gi|397780438|ref|YP_006544911.1| - 0.027 14.2 0.1 0.058 13.1 0.1 1.5 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DZR PF12773.2 gi|397780438|ref|YP_006544911.1| - 0.034 13.9 0.2 0.084 12.7 0.1 1.6 1 0 0 1 1 1 0 Double zinc ribbon RecR PF02132.10 gi|397780438|ref|YP_006544911.1| - 0.05 13.0 1.1 1.7 8.1 0.0 2.5 1 1 1 2 2 2 0 RecR protein TF_Zn_Ribbon PF08271.7 gi|397780438|ref|YP_006544911.1| - 0.071 12.4 1.7 0.84 9.0 0.1 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding Peptidase_M48 PF01435.13 gi|590000660|ref|YP_006544912.2| - 4.6e-07 29.6 0.0 6.7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 DUF4381 PF14316.1 gi|590000660|ref|YP_006544912.2| - 0.073 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) CbiA PF01656.18 gi|397780440|ref|YP_006544913.1| - 2e-32 112.2 0.0 2.5e-32 111.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|397780440|ref|YP_006544913.1| - 6.6e-09 35.3 0.2 8.8e-08 31.6 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|397780440|ref|YP_006544913.1| - 9.8e-09 34.6 0.1 8.1e-05 21.8 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ AAA_31 PF13614.1 gi|397780440|ref|YP_006544913.1| - 2.6e-07 30.7 0.0 2.1e-06 27.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|397780440|ref|YP_006544913.1| - 2.7e-06 26.9 0.0 0.34 10.2 0.0 3.0 3 0 0 3 3 3 2 YhjQ protein VirC1 PF07015.6 gi|397780440|ref|YP_006544913.1| - 6.7e-06 25.3 0.2 0.00027 20.0 0.1 2.1 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.10 gi|397780440|ref|YP_006544913.1| - 1.9e-05 23.8 0.5 0.00017 20.7 0.2 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase SRP54 PF00448.17 gi|397780440|ref|YP_006544913.1| - 9.1e-05 21.9 0.0 0.001 18.5 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|397780440|ref|YP_006544913.1| - 0.0074 16.0 0.1 0.02 14.6 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain MobB PF03205.9 gi|397780440|ref|YP_006544913.1| - 0.011 15.4 0.3 0.027 14.1 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|397780440|ref|YP_006544913.1| - 0.013 15.0 0.1 0.083 12.4 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ArgK PF03308.11 gi|397780440|ref|YP_006544913.1| - 0.079 11.7 0.1 0.19 10.4 0.0 1.6 2 0 0 2 2 2 0 ArgK protein LpxK PF02606.9 gi|397780440|ref|YP_006544913.1| - 0.086 11.7 0.1 0.21 10.4 0.1 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase MCPsignal PF00015.16 gi|397780441|ref|YP_006544914.1| - 6.7e-53 179.3 53.1 7.3e-51 172.7 18.6 4.3 2 2 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|397780441|ref|YP_006544914.1| - 1.1e-37 128.5 0.1 1.5e-10 41.3 0.0 5.1 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.5 gi|397780441|ref|YP_006544914.1| - 3.4e-30 104.3 0.0 4.1e-11 42.8 0.0 4.8 4 0 0 4 4 4 4 PAS fold PAS PF00989.19 gi|397780441|ref|YP_006544914.1| - 3.4e-24 84.8 0.0 8.1e-10 38.4 0.0 5.0 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|397780441|ref|YP_006544914.1| - 4.8e-13 48.4 0.0 0.00021 21.0 0.0 4.4 4 0 0 4 4 4 2 PAS domain PAS_10 PF13596.1 gi|397780441|ref|YP_006544914.1| - 2.9e-06 27.4 3.3 0.0023 18.1 0.0 4.5 5 0 0 5 5 5 1 PAS domain DUF948 PF06103.6 gi|397780441|ref|YP_006544914.1| - 0.00069 19.4 1.5 0.00069 19.4 1.0 5.0 3 1 1 4 4 4 1 Bacterial protein of unknown function (DUF948) PAS_7 PF12860.2 gi|397780441|ref|YP_006544914.1| - 0.00071 19.5 10.2 0.49 10.4 0.0 6.9 6 3 2 8 8 8 2 PAS fold HATPase_c_4 PF13749.1 gi|397780441|ref|YP_006544914.1| - 0.0016 18.2 4.9 3.5 7.4 0.0 4.7 5 0 0 5 5 5 1 ATP-dependent DNA helicase recG C-terminal APG17 PF04108.7 gi|397780441|ref|YP_006544914.1| - 0.0026 16.6 0.5 0.0026 16.6 0.3 3.8 3 1 1 4 4 4 1 Autophagy protein Apg17 V_ATPase_I PF01496.14 gi|397780441|ref|YP_006544914.1| - 0.096 10.5 15.5 0.87 7.3 10.8 2.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DASH_Dad1 PF08649.5 gi|397780441|ref|YP_006544914.1| - 1.9 8.2 7.5 19 5.0 0.0 4.0 3 0 0 3 3 3 0 DASH complex subunit Dad1 DUF3836 PF12930.2 gi|397780441|ref|YP_006544914.1| - 5.3 6.5 8.7 8.3 5.9 0.7 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF3836) NPV_P10 PF05531.7 gi|397780441|ref|YP_006544914.1| - 9.1 6.6 24.5 3.4 7.9 0.2 5.9 5 2 2 7 7 6 0 Nucleopolyhedrovirus P10 protein CheW PF01584.14 gi|397780442|ref|YP_006544915.1| - 7.1e-32 109.7 1.0 7.9e-32 109.6 0.7 1.0 1 0 0 1 1 1 1 CheW-like domain CheR PF01739.13 gi|397780443|ref|YP_006544916.1| - 7.3e-57 191.8 0.0 9.4e-57 191.4 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|397780443|ref|YP_006544916.1| - 4.3e-12 45.2 0.4 4.3e-12 45.2 0.2 2.1 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|397780443|ref|YP_006544916.1| - 0.00049 20.5 0.0 0.0011 19.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397780443|ref|YP_006544916.1| - 0.064 12.8 0.0 5.9 6.4 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|397780443|ref|YP_006544916.1| - 0.091 13.1 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF4239 PF14023.1 gi|397780444|ref|YP_006544917.1| - 4.7e-05 22.8 0.1 5.8e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4239) DUF2207 PF09972.4 gi|397780444|ref|YP_006544917.1| - 0.0062 15.1 0.0 0.0065 15.1 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) DUF1352 PF07086.7 gi|397780444|ref|YP_006544917.1| - 0.008 15.8 0.1 0.0096 15.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1352) DUF1469 PF07332.6 gi|397780444|ref|YP_006544917.1| - 0.0094 15.6 0.1 0.012 15.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) GPI2 PF06432.6 gi|397780444|ref|YP_006544917.1| - 0.01 15.1 0.3 0.012 15.0 0.2 1.0 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF4149 PF13664.1 gi|397780444|ref|YP_006544917.1| - 0.011 15.7 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) RseC_MucC PF04246.7 gi|397780444|ref|YP_006544917.1| - 0.014 14.9 0.2 0.018 14.5 0.2 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC TMEM220 PF15071.1 gi|397780444|ref|YP_006544917.1| - 0.017 15.5 0.0 0.022 15.2 0.0 1.1 1 0 0 1 1 1 0 Transmembrane family 220, helix DUF4131 PF13567.1 gi|397780444|ref|YP_006544917.1| - 0.022 14.1 0.1 0.029 13.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF1056 PF06341.6 gi|397780444|ref|YP_006544917.1| - 0.022 14.7 4.4 0.03 14.3 3.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1056) DUF1430 PF07242.6 gi|397780444|ref|YP_006544917.1| - 0.036 14.1 1.8 0.047 13.7 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1430) DUF4018 PF13210.1 gi|397780444|ref|YP_006544917.1| - 0.043 13.1 3.1 0.056 12.8 2.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4018) TMEM18 PF14770.1 gi|397780444|ref|YP_006544917.1| - 0.064 12.7 0.8 0.1 12.1 0.5 1.3 1 0 0 1 1 1 0 Transmembrane protein 18 Med7 PF05983.6 gi|397780444|ref|YP_006544917.1| - 0.1 12.3 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 MED7 protein DUF4231 PF14015.1 gi|397780444|ref|YP_006544917.1| - 0.24 11.4 0.9 0.42 10.6 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) DUF3139 PF11337.3 gi|397780444|ref|YP_006544917.1| - 0.27 11.5 0.1 0.27 11.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3139) DUF3043 PF11241.3 gi|397780444|ref|YP_006544917.1| - 0.27 10.7 1.6 0.41 10.2 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) DUF4381 PF14316.1 gi|397780444|ref|YP_006544917.1| - 0.3 11.1 1.6 4.5 7.3 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4381) Sperm_Ag_HE2 PF05324.8 gi|397780444|ref|YP_006544917.1| - 0.87 9.5 0.0 0.87 9.5 0.0 2.6 3 0 0 3 3 2 0 Sperm antigen HE2 YajC PF02699.10 gi|397780444|ref|YP_006544917.1| - 4.8 6.9 6.9 0.51 10.0 0.3 2.0 1 1 1 2 2 2 0 Preprotein translocase subunit Lamp PF01299.12 gi|397780445|ref|YP_006544918.1| - 4.9 6.2 5.2 6.9 5.7 3.6 1.2 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) RWP-RK PF02042.10 gi|397780447|ref|YP_006544920.1| - 0.05 13.4 0.0 0.083 12.7 0.0 1.4 1 0 0 1 1 1 0 RWP-RK domain DUF4131 PF13567.1 gi|397780449|ref|YP_006544922.1| - 0.0074 15.7 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) BenE PF03594.8 gi|397780449|ref|YP_006544922.1| - 0.018 13.5 0.6 0.025 13.1 0.4 1.1 1 0 0 1 1 1 0 Benzoate membrane transport protein DUF2269 PF10027.4 gi|397780449|ref|YP_006544922.1| - 0.022 14.5 0.4 0.047 13.4 0.3 1.5 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) CopD PF05425.8 gi|397780449|ref|YP_006544922.1| - 0.024 14.8 0.2 0.043 14.0 0.1 1.4 1 0 0 1 1 1 0 Copper resistance protein D DUF903 PF06004.7 gi|397780449|ref|YP_006544922.1| - 0.11 11.9 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF903) DUF1283 PF06932.6 gi|397780451|ref|YP_006544924.1| - 0.073 13.0 0.1 0.097 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1283) DUF2360 PF10152.4 gi|397780452|ref|YP_006544925.1| - 6.3 7.0 8.6 3.9 7.7 1.3 2.3 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein (DUF2360) DHH PF01368.15 gi|397780453|ref|YP_006544926.1| - 6e-09 35.6 0.0 9.7e-09 35.0 0.0 1.3 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|397780453|ref|YP_006544926.1| - 2.4e-08 33.7 0.0 1.1e-07 31.5 0.0 2.2 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|397780453|ref|YP_006544926.1| - 3e-06 27.2 0.2 8.2e-06 25.8 0.1 1.8 1 0 0 1 1 1 1 S1 RNA binding domain EFhand_Ca_insen PF08726.5 gi|397780453|ref|YP_006544926.1| - 0.07 13.1 0.0 0.88 9.5 0.0 2.4 2 0 0 2 2 2 0 Ca2+ insensitive EF hand TrkA_C PF02080.16 gi|590000661|ref|YP_006544927.2| - 2.3e-27 94.3 0.3 2.2e-12 46.3 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|590000661|ref|YP_006544927.2| - 9.3e-12 45.2 15.0 1.2e-06 28.8 4.4 2.3 2 0 0 2 2 2 2 PhoU domain Cupin_6 PF12852.2 gi|590000661|ref|YP_006544927.2| - 2.6e-05 23.9 0.0 0.0025 17.4 0.0 2.2 2 0 0 2 2 2 2 Cupin DUF1491 PF07372.7 gi|590000661|ref|YP_006544927.2| - 0.031 14.1 1.6 5.6 6.9 0.1 3.5 4 1 0 4 4 4 0 Protein of unknown function (DUF1491) MgtE PF01769.11 gi|397780455|ref|YP_006544928.1| - 1.4e-38 132.2 28.2 3.8e-21 75.7 7.8 2.8 3 0 0 3 3 3 2 Divalent cation transporter DUF1129 PF06570.6 gi|397780455|ref|YP_006544928.1| - 7.2 5.8 14.8 7.8 5.7 5.8 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) Lactamase_B_2 PF12706.2 gi|397780456|ref|YP_006544929.1| - 3.5e-31 108.2 0.0 5.9e-31 107.5 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|397780456|ref|YP_006544929.1| - 2.5e-16 59.9 1.5 5.8e-15 55.4 1.0 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|397780456|ref|YP_006544929.1| - 0.02 14.3 0.0 0.038 13.4 0.0 1.4 1 0 0 1 1 1 0 tRNase Z endonuclease AP_endonuc_2 PF01261.19 gi|397780457|ref|YP_006544930.1| - 5.5e-22 78.0 0.1 7.2e-22 77.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AAA_18 PF13238.1 gi|397780458|ref|YP_006544931.1| - 1.6e-09 38.1 0.0 2.3e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|397780458|ref|YP_006544931.1| - 2.9e-09 37.7 0.0 7.9e-09 36.3 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|397780458|ref|YP_006544931.1| - 0.00027 20.8 0.0 0.00053 19.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|397780458|ref|YP_006544931.1| - 0.0092 15.8 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Adenylate kinase Zeta_toxin PF06414.7 gi|397780458|ref|YP_006544931.1| - 0.039 13.0 0.0 0.12 11.3 0.0 1.8 1 1 0 1 1 1 0 Zeta toxin CoaE PF01121.15 gi|397780458|ref|YP_006544931.1| - 0.044 13.1 0.1 0.18 11.1 0.1 1.8 2 0 0 2 2 2 0 Dephospho-CoA kinase Radical_SAM PF04055.16 gi|397780459|ref|YP_006544932.1| - 1.4e-19 70.8 0.0 1.8e-19 70.5 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|397780459|ref|YP_006544932.1| - 2.4e-09 37.2 0.0 3.7e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|397780459|ref|YP_006544932.1| - 3e-08 33.8 0.0 4.1e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain ThiC PF01964.13 gi|397780460|ref|YP_006544933.1| - 6e-182 604.8 0.6 6.8e-182 604.6 0.4 1.0 1 0 0 1 1 1 1 ThiC family CMD PF02627.15 gi|397780462|ref|YP_006544935.1| - 3.9e-14 52.2 0.9 5.7e-14 51.7 0.4 1.5 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family 5-FTHF_cyc-lig PF01812.15 gi|397780463|ref|YP_006544936.1| - 8.1e-36 123.5 0.0 9.2e-36 123.3 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family AAA PF00004.24 gi|397780464|ref|YP_006544937.1| - 1.2e-99 329.6 0.0 8.2e-50 168.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|397780464|ref|YP_006544937.1| - 8.8e-23 80.0 0.1 4.5e-22 77.7 0.1 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|397780464|ref|YP_006544937.1| - 3.3e-16 59.0 0.0 1.5e-08 33.9 0.0 2.6 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|397780464|ref|YP_006544937.1| - 2.7e-15 56.7 0.0 1.9e-07 31.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|397780464|ref|YP_006544937.1| - 4.4e-14 52.7 1.0 5.1e-05 23.4 0.0 4.7 3 2 0 3 3 2 2 AAA domain AAA_16 PF13191.1 gi|397780464|ref|YP_006544937.1| - 4.9e-14 52.7 1.6 1e-06 28.8 0.0 3.5 4 1 0 4 4 3 2 AAA ATPase domain CDC48_2 PF02933.12 gi|397780464|ref|YP_006544937.1| - 9.1e-13 47.6 0.0 2.4e-12 46.2 0.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_17 PF13207.1 gi|397780464|ref|YP_006544937.1| - 7.9e-12 46.0 0.2 9.5e-05 23.2 0.0 3.4 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|397780464|ref|YP_006544937.1| - 2.2e-11 43.1 0.1 0.0001 21.1 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_14 PF13173.1 gi|397780464|ref|YP_006544937.1| - 6e-11 42.3 0.0 7.4e-05 22.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|397780464|ref|YP_006544937.1| - 7.3e-11 42.1 0.0 8.1e-05 22.5 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|397780464|ref|YP_006544937.1| - 3e-10 39.9 0.5 0.00081 19.1 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|397780464|ref|YP_006544937.1| - 5.4e-10 38.7 0.1 0.001 18.1 0.0 2.8 3 0 0 3 3 2 2 Zeta toxin AAA_19 PF13245.1 gi|397780464|ref|YP_006544937.1| - 2.1e-09 37.0 0.1 0.0027 17.4 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain Arch_ATPase PF01637.13 gi|397780464|ref|YP_006544937.1| - 4.7e-09 36.2 2.3 0.0013 18.4 0.0 4.1 3 2 0 4 4 4 2 Archaeal ATPase IstB_IS21 PF01695.12 gi|397780464|ref|YP_006544937.1| - 2.8e-08 33.4 0.0 0.0061 15.9 0.0 2.7 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|397780464|ref|YP_006544937.1| - 5.3e-08 33.2 0.0 0.012 15.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|397780464|ref|YP_006544937.1| - 2.4e-07 30.8 0.0 0.02 14.8 0.0 2.9 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|397780464|ref|YP_006544937.1| - 3.6e-07 29.5 0.9 0.042 13.0 0.0 3.2 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|397780464|ref|YP_006544937.1| - 5.9e-07 29.6 0.0 0.022 14.9 0.0 2.8 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.21 gi|397780464|ref|YP_006544937.1| - 2.2e-06 27.2 0.1 0.24 10.8 0.0 3.8 2 2 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|397780464|ref|YP_006544937.1| - 6.9e-06 26.4 0.2 0.3 11.3 0.0 3.3 3 1 0 3 3 3 2 ABC transporter DUF815 PF05673.8 gi|397780464|ref|YP_006544937.1| - 1.7e-05 23.9 0.0 0.12 11.2 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|397780464|ref|YP_006544937.1| - 1.8e-05 24.4 0.0 0.16 11.5 0.0 2.8 2 0 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|397780464|ref|YP_006544937.1| - 1.8e-05 23.9 3.9 0.61 9.1 0.0 4.4 3 2 1 4 4 4 2 KaiC AAA_25 PF13481.1 gi|397780464|ref|YP_006544937.1| - 1.8e-05 24.2 10.6 0.65 9.3 0.1 4.6 3 2 1 5 5 4 3 AAA domain Sigma54_activ_2 PF14532.1 gi|397780464|ref|YP_006544937.1| - 1.9e-05 24.7 0.0 0.2 11.6 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain DUF2075 PF09848.4 gi|397780464|ref|YP_006544937.1| - 2.7e-05 23.3 0.1 0.17 10.8 0.0 3.1 3 0 0 3 3 3 2 Uncharacterized conserved protein (DUF2075) AAA_3 PF07726.6 gi|397780464|ref|YP_006544937.1| - 2.7e-05 23.7 0.0 0.17 11.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|397780464|ref|YP_006544937.1| - 2.8e-05 23.8 0.0 2 8.0 0.0 4.0 3 1 1 4 4 4 1 NACHT domain PhoH PF02562.11 gi|397780464|ref|YP_006544937.1| - 3.2e-05 23.2 0.1 0.23 10.6 0.0 2.7 3 0 0 3 3 2 2 PhoH-like protein Parvo_NS1 PF01057.12 gi|397780464|ref|YP_006544937.1| - 3.3e-05 22.8 0.0 0.075 11.8 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|397780464|ref|YP_006544937.1| - 3.6e-05 22.7 0.0 0.11 11.3 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain NTPase_1 PF03266.10 gi|397780464|ref|YP_006544937.1| - 8.4e-05 22.3 8.8 0.55 9.9 0.0 4.9 4 2 1 5 5 4 2 NTPase AAA_11 PF13086.1 gi|397780464|ref|YP_006544937.1| - 0.00041 20.0 0.4 1.2 8.6 0.0 2.8 2 1 0 2 2 2 2 AAA domain ATP-synt_ab PF00006.20 gi|397780464|ref|YP_006544937.1| - 0.00042 19.8 0.0 0.35 10.3 0.0 2.4 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Bac_DnaA PF00308.13 gi|397780464|ref|YP_006544937.1| - 0.0008 19.1 0.0 1.8 8.1 0.0 2.8 2 1 0 2 2 2 2 Bacterial dnaA protein AAA_30 PF13604.1 gi|397780464|ref|YP_006544937.1| - 0.0012 18.4 0.0 2.1 7.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain SKI PF01202.17 gi|397780464|ref|YP_006544937.1| - 0.0026 17.6 1.9 0.84 9.4 0.0 3.3 3 1 0 3 3 3 1 Shikimate kinase T2SE PF00437.15 gi|397780464|ref|YP_006544937.1| - 0.0033 16.3 0.0 2.4 6.9 0.0 2.9 3 0 0 3 3 3 1 Type II/IV secretion system protein UPF0079 PF02367.12 gi|397780464|ref|YP_006544937.1| - 0.0043 16.6 0.0 3.9 7.1 0.0 2.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 ResIII PF04851.10 gi|397780464|ref|YP_006544937.1| - 0.0046 16.8 0.0 3.7 7.3 0.0 2.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Cytidylate_kin2 PF13189.1 gi|397780464|ref|YP_006544937.1| - 0.0075 16.1 0.1 0.67 9.8 0.0 2.7 3 0 0 3 3 2 1 Cytidylate kinase-like family KTI12 PF08433.5 gi|397780464|ref|YP_006544937.1| - 0.033 13.3 0.0 7.9 5.5 0.0 2.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|397780464|ref|YP_006544937.1| - 0.046 13.2 0.0 0.65 9.4 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_23 PF13476.1 gi|397780464|ref|YP_006544937.1| - 0.051 13.9 1.9 21 5.3 0.0 3.5 3 0 0 3 3 3 0 AAA domain DUF4563 PF15124.1 gi|397780464|ref|YP_006544937.1| - 0.1 12.1 0.1 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4563) PIF1 PF05970.9 gi|397780464|ref|YP_006544937.1| - 0.13 11.1 0.0 4.8 6.0 0.0 2.4 2 0 0 2 2 2 0 PIF1-like helicase AAA_10 PF12846.2 gi|397780464|ref|YP_006544937.1| - 0.38 10.1 3.2 13 5.1 0.0 3.6 3 1 0 4 4 3 0 AAA-like domain GvpH PF05455.6 gi|397780465|ref|YP_006544938.1| - 6.3e-05 22.6 0.1 0.00016 21.3 0.0 1.6 1 1 0 1 1 1 1 GvpH HSP20 PF00011.16 gi|397780465|ref|YP_006544938.1| - 0.00025 20.8 0.0 0.13 12.1 0.0 2.2 1 1 1 2 2 2 2 Hsp20/alpha crystallin family FBPase_3 PF01950.11 gi|397780466|ref|YP_006544939.1| - 7.9e-184 610.7 0.0 9e-184 610.5 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase LSM PF01423.17 gi|397780467|ref|YP_006544940.1| - 1.4e-18 66.2 0.5 1.7e-18 65.9 0.4 1.1 1 0 0 1 1 1 1 LSM domain MtrG PF04210.8 gi|397780467|ref|YP_006544940.1| - 0.081 12.6 0.2 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G B-block_TFIIIC PF04182.7 gi|397780468|ref|YP_006544941.1| - 1.5e-08 34.3 0.1 1.9e-08 34.0 0.1 1.1 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|397780468|ref|YP_006544941.1| - 1.2e-05 24.9 0.1 1.6e-05 24.5 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|397780468|ref|YP_006544941.1| - 0.00011 21.8 0.1 0.00016 21.2 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|397780468|ref|YP_006544941.1| - 0.00041 19.9 0.0 0.00054 19.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|397780468|ref|YP_006544941.1| - 0.0019 17.5 0.8 0.0026 17.1 0.5 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|397780468|ref|YP_006544941.1| - 0.0056 16.9 0.1 0.0067 16.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|397780468|ref|YP_006544941.1| - 0.0082 16.0 0.1 0.011 15.6 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|397780468|ref|YP_006544941.1| - 0.012 15.0 0.4 0.017 14.5 0.3 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_20 PF12840.2 gi|397780468|ref|YP_006544941.1| - 0.037 13.8 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF387 PF04079.11 gi|397780468|ref|YP_006544941.1| - 0.044 13.1 0.2 0.051 12.9 0.1 1.1 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) MMPL PF03176.10 gi|397780469|ref|YP_006544942.1| - 3.8e-54 183.6 17.0 2e-30 105.6 1.8 2.4 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|397780469|ref|YP_006544942.1| - 1.8e-17 63.2 17.0 1.1e-09 37.9 4.1 2.6 2 1 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|397780469|ref|YP_006544942.1| - 9.5e-15 54.2 25.5 1.5e-09 37.3 4.5 2.6 2 0 0 2 2 2 2 Protein export membrane protein ACR_tran PF00873.14 gi|397780469|ref|YP_006544942.1| - 2.3e-08 32.0 29.0 1.6e-05 22.5 6.8 3.0 2 2 1 3 3 3 2 AcrB/AcrD/AcrF family Patched PF02460.13 gi|397780469|ref|YP_006544942.1| - 3.4e-08 31.9 27.7 3.9e-06 25.1 7.9 2.2 2 0 0 2 2 2 2 Patched family DUF389 PF04087.9 gi|397780470|ref|YP_006544943.1| - 1.5e-19 70.2 20.0 1.5e-19 70.2 13.9 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF389) DUF1218 PF06749.7 gi|397780470|ref|YP_006544943.1| - 0.055 13.9 1.7 0.055 13.9 1.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1218) DUF1129 PF06570.6 gi|397780470|ref|YP_006544943.1| - 0.18 11.1 6.3 3.2 7.0 0.2 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF1129) PhoU PF01895.14 gi|397780471|ref|YP_006544944.1| - 9.8e-30 102.8 8.0 2.9e-18 66.1 0.8 2.2 2 0 0 2 2 2 2 PhoU domain ABC_tran PF00005.22 gi|397780472|ref|YP_006544945.1| - 4.2e-30 104.8 0.0 5.8e-30 104.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780472|ref|YP_006544945.1| - 1.9e-13 51.0 0.0 5.1e-06 26.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397780472|ref|YP_006544945.1| - 2.9e-08 33.2 0.0 2.9e-05 23.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|397780472|ref|YP_006544945.1| - 4.8e-07 29.9 0.0 0.00052 20.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|397780472|ref|YP_006544945.1| - 0.00011 21.4 0.0 0.00027 20.1 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|397780472|ref|YP_006544945.1| - 0.00014 22.0 0.0 0.00045 20.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|397780472|ref|YP_006544945.1| - 0.00017 21.0 0.0 0.00031 20.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|397780472|ref|YP_006544945.1| - 0.00027 20.1 0.1 0.48 9.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|397780472|ref|YP_006544945.1| - 0.0025 18.1 0.0 0.0043 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|397780472|ref|YP_006544945.1| - 0.0027 17.1 0.0 0.025 14.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|397780472|ref|YP_006544945.1| - 0.0055 15.2 0.1 0.21 9.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|397780472|ref|YP_006544945.1| - 0.006 16.3 0.0 0.051 13.2 0.0 2.0 2 0 0 2 2 2 1 Archaeal ATPase AAA_19 PF13245.1 gi|397780472|ref|YP_006544945.1| - 0.011 15.4 0.0 0.26 11.0 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_10 PF12846.2 gi|397780472|ref|YP_006544945.1| - 0.012 15.0 0.0 0.027 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|397780472|ref|YP_006544945.1| - 0.032 14.1 0.0 0.072 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|397780472|ref|YP_006544945.1| - 0.044 13.6 0.0 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|397780472|ref|YP_006544945.1| - 0.058 12.0 0.0 0.087 11.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MobB PF03205.9 gi|397780472|ref|YP_006544945.1| - 0.087 12.5 0.1 1.8 8.2 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_31 PF13614.1 gi|397780472|ref|YP_006544945.1| - 0.091 12.6 0.1 0.2 11.5 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA PF00004.24 gi|397780472|ref|YP_006544945.1| - 0.1 12.8 0.0 1.5 9.0 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|397780472|ref|YP_006544945.1| - 0.1 13.4 0.9 0.21 12.3 0.6 2.0 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|397780472|ref|YP_006544945.1| - 0.12 11.4 0.0 0.23 10.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|397780472|ref|YP_006544945.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain KaiC PF06745.8 gi|397780472|ref|YP_006544945.1| - 0.15 11.1 0.0 0.77 8.8 0.0 1.9 2 0 0 2 2 2 0 KaiC BPD_transp_1 PF00528.17 gi|590000662|ref|YP_006544946.2| - 8.4e-46 155.8 36.4 3.3e-24 85.4 9.6 4.3 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component UPF0233 PF06781.7 gi|590000662|ref|YP_006544946.2| - 0.074 12.6 0.2 0.78 9.4 0.1 2.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) DUF3333 PF11812.3 gi|590000662|ref|YP_006544946.2| - 1 9.3 5.3 4.6 7.2 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3333) PhoU PF01895.14 gi|590000663|ref|YP_006544947.2| - 5.9e-24 84.3 6.8 1.8e-17 63.5 1.1 2.2 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|590000663|ref|YP_006544947.2| - 1.4e-10 40.6 0.1 3.9e-10 39.2 0.0 1.8 2 0 0 2 2 2 1 Antidote-toxin recognition MazE CitMHS PF03600.11 gi|397780475|ref|YP_006544948.1| - 2.1e-35 121.9 35.0 1.5e-34 119.1 16.8 2.0 1 1 1 2 2 2 2 Citrate transporter 7TM_GPCR_Srv PF10323.4 gi|397780475|ref|YP_006544948.1| - 0.064 12.3 4.2 0.35 9.9 0.0 2.6 3 0 0 3 3 3 0 Serpentine type 7TM GPCR chemoreceptor Srv DNA_processg_A PF02481.10 gi|397780475|ref|YP_006544948.1| - 0.14 11.0 0.6 0.39 9.5 0.1 1.8 2 0 0 2 2 2 0 DNA recombination-mediator protein A MobB PF03205.9 gi|397780476|ref|YP_006544949.1| - 1.5e-06 27.9 0.0 2.5e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Clp1 PF06807.9 gi|397780476|ref|YP_006544949.1| - 8.9e-05 22.3 0.0 0.00017 21.4 0.0 1.3 1 0 0 1 1 1 1 Pre-mRNA cleavage complex II protein Clp1 PduV-EutP PF10662.4 gi|397780476|ref|YP_006544949.1| - 0.0021 17.5 0.0 0.025 14.0 0.0 2.1 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation T2SE PF00437.15 gi|397780476|ref|YP_006544949.1| - 0.0024 16.8 0.0 0.0038 16.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|397780476|ref|YP_006544949.1| - 0.0026 17.7 0.0 0.007 16.3 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase CbiA PF01656.18 gi|397780476|ref|YP_006544949.1| - 0.0076 15.6 0.1 0.038 13.4 0.1 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|397780476|ref|YP_006544949.1| - 0.013 16.3 0.1 0.038 14.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|397780476|ref|YP_006544949.1| - 0.02 15.0 0.0 0.039 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|397780476|ref|YP_006544949.1| - 0.069 12.9 0.0 4.2 7.1 0.0 2.5 3 0 0 3 3 3 0 Dynamin family AAA_16 PF13191.1 gi|397780476|ref|YP_006544949.1| - 0.079 12.9 0.1 0.17 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.17 gi|397780476|ref|YP_006544949.1| - 0.12 12.6 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.1 gi|397780476|ref|YP_006544949.1| - 0.13 11.6 0.0 0.3 10.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|397780476|ref|YP_006544949.1| - 0.15 11.4 0.0 0.46 9.9 0.0 1.7 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain TBP PF00352.16 gi|397780477|ref|YP_006544950.1| - 6e-62 205.0 0.0 5.1e-31 105.8 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|397780477|ref|YP_006544950.1| - 6.6e-05 22.8 0.0 0.048 13.7 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) AMP-binding PF00501.23 gi|397780478|ref|YP_006544951.1| - 5.1e-98 328.1 0.1 6.1e-98 327.9 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|397780478|ref|YP_006544951.1| - 1.3e-22 80.5 1.0 7.4e-22 78.0 0.0 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain HhH-GPD PF00730.20 gi|397780479|ref|YP_006544952.1| - 2e-19 69.8 0.0 2.9e-19 69.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|397780479|ref|YP_006544952.1| - 0.0072 16.4 0.8 0.47 10.6 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|397780479|ref|YP_006544952.1| - 0.16 12.1 5.1 0.32 11.2 3.5 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III NAD_synthase PF02540.12 gi|397780480|ref|YP_006544953.1| - 1e-73 247.2 0.0 1.3e-73 246.9 0.0 1.1 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.17 gi|397780480|ref|YP_006544953.1| - 6.3e-09 35.4 0.0 1.4e-08 34.3 0.0 1.6 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase Asn_synthase PF00733.16 gi|397780480|ref|YP_006544953.1| - 8.5e-05 22.1 0.0 0.00014 21.4 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|397780480|ref|YP_006544953.1| - 0.023 13.2 0.0 0.035 12.6 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase HATPase_c PF02518.21 gi|397780481|ref|YP_006544954.1| - 6e-16 58.1 0.0 1e-15 57.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|397780481|ref|YP_006544954.1| - 2.8e-08 34.0 0.0 1.7e-07 31.5 0.0 2.3 3 0 0 3 3 3 1 PAS domain PAS_8 PF13188.1 gi|397780481|ref|YP_006544954.1| - 9.7e-06 25.2 0.0 3.5e-05 23.5 0.0 2.0 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|397780481|ref|YP_006544954.1| - 0.0013 18.5 0.0 0.003 17.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|397780481|ref|YP_006544954.1| - 0.051 13.5 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 PAS fold HATPase_c_3 PF13589.1 gi|397780481|ref|YP_006544954.1| - 0.14 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4118 PF13493.1 gi|397780481|ref|YP_006544954.1| - 0.21 11.8 10.4 0.34 11.1 7.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) Usp PF00582.21 gi|397780482|ref|YP_006544955.1| - 4.8e-26 91.6 8.4 7.5e-16 58.5 1.2 2.4 2 0 0 2 2 2 2 Universal stress protein family Acetyltransf_7 PF13508.1 gi|397780482|ref|YP_006544955.1| - 1.3e-10 41.2 0.1 2.5e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|397780482|ref|YP_006544955.1| - 1.2e-05 25.4 0.2 8.2e-05 22.7 0.0 2.2 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|397780482|ref|YP_006544955.1| - 0.00069 19.5 0.1 0.002 18.1 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|397780482|ref|YP_006544955.1| - 0.011 15.6 0.5 0.039 13.8 0.1 2.1 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|397780482|ref|YP_006544955.1| - 0.04 14.0 0.0 0.08 13.1 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|397780482|ref|YP_006544955.1| - 0.085 12.7 0.0 0.34 10.8 0.0 2.0 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Rib PF08428.5 gi|397780483|ref|YP_006544956.1| - 0.16 11.7 2.1 7.2 6.4 0.0 2.1 2 0 0 2 2 2 0 Rib/alpha-like repeat Metallophos_2 PF12850.2 gi|397780484|ref|YP_006544957.1| - 1.7e-29 102.7 0.6 1.9e-29 102.5 0.4 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|397780484|ref|YP_006544957.1| - 1.7e-05 24.3 7.4 0.0012 18.2 5.1 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|397780484|ref|YP_006544957.1| - 0.00033 19.9 0.1 0.016 14.4 0.0 2.2 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily MDMPI_C PF07398.6 gi|397780484|ref|YP_006544957.1| - 0.015 15.8 2.3 0.12 12.9 0.2 2.4 2 0 0 2 2 2 0 MDMPI C-terminal domain PilJ PF13675.1 gi|397780485|ref|YP_006544958.1| - 1.1 9.5 5.1 0.41 10.9 0.8 2.2 2 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Pyridox_ox_2 PF12900.2 gi|397780486|ref|YP_006544959.1| - 1.1e-20 73.8 0.0 1.3e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|397780486|ref|YP_006544959.1| - 0.016 15.2 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase TrmB PF01978.14 gi|397780487|ref|YP_006544960.1| - 7.8e-06 25.5 0.0 1.3e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|397780487|ref|YP_006544960.1| - 0.00092 18.6 0.9 0.0012 18.3 0.6 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.15 gi|397780487|ref|YP_006544960.1| - 0.0022 17.6 0.0 0.0049 16.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|397780487|ref|YP_006544960.1| - 0.0052 16.7 0.0 0.0087 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|397780487|ref|YP_006544960.1| - 0.0077 15.8 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|397780487|ref|YP_006544960.1| - 0.11 12.8 0.1 0.2 12.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rib_5-P_isom_A PF06026.9 gi|397780488|ref|YP_006544961.1| - 1.9e-56 190.0 0.0 2.3e-56 189.8 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|397780488|ref|YP_006544961.1| - 2.4e-07 30.5 0.0 3.9e-05 23.3 0.0 2.1 2 0 0 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|397780488|ref|YP_006544961.1| - 0.027 13.3 0.0 0.041 12.7 0.0 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain SurE PF01975.12 gi|397780489|ref|YP_006544962.1| - 2.3e-56 190.2 0.1 2.9e-56 189.9 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE ATP-grasp_3 PF02655.9 gi|397780490|ref|YP_006544963.1| - 2e-30 105.8 0.0 8.3e-30 103.7 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|397780490|ref|YP_006544963.1| - 2.3e-07 30.7 0.0 5.2e-07 29.5 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|397780490|ref|YP_006544963.1| - 1.6e-06 27.1 0.2 0.00039 19.2 0.1 2.5 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|397780490|ref|YP_006544963.1| - 0.0012 18.3 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|397780490|ref|YP_006544963.1| - 0.023 14.1 0.1 0.088 12.2 0.0 1.8 2 0 0 2 2 2 0 RimK-like ATP-grasp domain Hydantoinase_A PF01968.13 gi|397780491|ref|YP_006544964.1| - 1.7e-07 30.6 0.0 7.4e-07 28.5 0.0 1.9 1 1 0 1 1 1 1 Hydantoinase/oxoprolinase DZR PF12773.2 gi|397780492|ref|YP_006544965.1| - 0.037 13.8 0.9 0.13 12.1 0.6 1.8 1 1 0 1 1 1 0 Double zinc ribbon DDE_Tnp_IS66 PF03050.9 gi|397780492|ref|YP_006544965.1| - 0.04 13.1 0.0 0.059 12.5 0.0 1.1 1 0 0 1 1 1 0 Transposase IS66 family Lar_restr_allev PF14354.1 gi|397780492|ref|YP_006544965.1| - 0.072 13.4 0.4 0.14 12.5 0.3 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-TFIIB PF13453.1 gi|397780492|ref|YP_006544965.1| - 0.12 11.6 1.8 1.7 7.9 0.1 2.5 3 0 0 3 3 3 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|397780492|ref|YP_006544965.1| - 0.37 10.7 3.6 2.4 8.2 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|397780492|ref|YP_006544965.1| - 0.37 10.0 8.7 1.8 7.8 0.6 2.8 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|397780492|ref|YP_006544965.1| - 0.41 10.1 7.0 2.8 7.5 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|397780492|ref|YP_006544965.1| - 0.53 10.3 4.6 1.3 9.1 3.2 1.7 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.1 gi|397780492|ref|YP_006544965.1| - 9.7 5.9 9.6 12 5.6 0.3 2.6 3 0 0 3 3 3 0 Nudix N-terminal Molybdopterin PF00384.17 gi|397780493|ref|YP_006544966.1| - 3.3e-91 306.1 0.1 4e-91 305.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|397780493|ref|YP_006544966.1| - 1.3e-34 118.3 0.1 4.8e-34 116.4 0.0 1.9 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|397780493|ref|YP_006544966.1| - 1.6e-19 69.4 1.6 3.1e-19 68.5 1.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF4358 PF14270.1 gi|397780493|ref|YP_006544966.1| - 0.0022 17.8 0.1 0.0061 16.4 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4358) FrhB_FdhB_C PF04432.8 gi|397780494|ref|YP_006544967.1| - 7.1e-35 119.7 0.2 1.2e-34 118.9 0.0 1.5 1 1 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|397780494|ref|YP_006544967.1| - 9.7e-25 86.2 0.1 2.1e-24 85.1 0.0 1.6 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|397780494|ref|YP_006544967.1| - 7.9e-09 35.4 8.6 7.9e-09 35.4 6.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397780494|ref|YP_006544967.1| - 1.9e-08 34.6 2.5 0.00042 20.6 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397780494|ref|YP_006544967.1| - 4.8e-07 29.9 9.0 4.8e-07 29.9 6.3 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397780494|ref|YP_006544967.1| - 1.1e-06 28.8 7.6 1.1e-06 28.8 5.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397780494|ref|YP_006544967.1| - 3.1e-06 27.4 8.9 3.1e-06 27.4 6.2 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397780494|ref|YP_006544967.1| - 3.5e-06 26.7 24.1 0.00011 21.9 9.8 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|397780494|ref|YP_006544967.1| - 1.6e-05 24.2 21.1 0.00016 21.1 1.8 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|397780494|ref|YP_006544967.1| - 6e-05 22.7 17.9 0.0021 17.9 1.0 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|397780494|ref|YP_006544967.1| - 0.00025 21.5 4.5 0.5 10.9 0.4 2.9 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|397780494|ref|YP_006544967.1| - 0.00067 19.2 3.7 0.26 10.9 0.3 2.4 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|397780494|ref|YP_006544967.1| - 0.0054 16.5 1.1 0.0054 16.5 0.8 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|397780494|ref|YP_006544967.1| - 0.014 15.6 3.5 0.014 15.6 2.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|397780494|ref|YP_006544967.1| - 0.051 14.1 3.7 0.051 14.1 2.6 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|397780494|ref|YP_006544967.1| - 0.058 13.7 13.4 0.25 11.7 1.9 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|397780494|ref|YP_006544967.1| - 0.1 13.3 14.5 1.5 9.6 1.4 3.1 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|397780494|ref|YP_006544967.1| - 0.25 11.2 18.2 1.6 8.6 10.6 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.17 gi|397780495|ref|YP_006544968.1| - 4.1e-87 292.6 0.0 5e-87 292.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|397780495|ref|YP_006544968.1| - 3.8e-33 113.5 0.0 7.5e-33 112.6 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|397780495|ref|YP_006544968.1| - 2.3e-20 72.1 2.4 4.7e-20 71.1 1.7 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Peptidase_C78 PF07910.8 gi|397780495|ref|YP_006544968.1| - 0.0015 17.6 0.0 0.086 11.9 0.0 2.2 2 0 0 2 2 2 1 Peptidase family C78 DUF4358 PF14270.1 gi|397780495|ref|YP_006544968.1| - 0.0025 17.6 0.1 0.0066 16.3 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4358) FrhB_FdhB_C PF04432.8 gi|397780496|ref|YP_006544969.1| - 1.2e-41 141.7 0.3 2.3e-41 140.9 0.2 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|397780496|ref|YP_006544969.1| - 8.6e-25 86.4 0.6 1.8e-24 85.3 0.1 1.8 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|397780496|ref|YP_006544969.1| - 1.8e-07 31.0 17.1 3.1e-07 30.3 10.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|397780496|ref|YP_006544969.1| - 1.8e-05 24.1 19.7 0.0015 18.0 2.6 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|397780496|ref|YP_006544969.1| - 0.00011 22.5 12.8 0.017 15.5 0.5 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397780496|ref|YP_006544969.1| - 0.00011 22.4 18.4 0.001 19.3 11.3 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397780496|ref|YP_006544969.1| - 0.0015 18.2 21.3 0.056 13.2 2.4 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397780496|ref|YP_006544969.1| - 0.0015 18.2 3.3 0.0015 18.2 2.3 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397780496|ref|YP_006544969.1| - 0.014 15.7 17.9 0.014 15.7 12.4 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397780496|ref|YP_006544969.1| - 0.039 14.2 21.8 0.36 11.1 13.6 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397780496|ref|YP_006544969.1| - 0.044 13.6 17.3 0.24 11.2 0.8 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397780496|ref|YP_006544969.1| - 0.36 11.4 12.7 2.8 8.5 1.9 3.3 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|397780496|ref|YP_006544969.1| - 0.6 10.0 31.5 0.067 13.0 2.5 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|397780496|ref|YP_006544969.1| - 2.6 8.5 17.7 6.9 7.1 3.9 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF4277 PF14104.1 gi|397780497|ref|YP_006544970.1| - 7e-44 148.7 0.1 1.5e-43 147.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|397780497|ref|YP_006544970.1| - 2.6e-09 36.9 4.1 3.2e-09 36.6 0.2 2.6 2 1 0 2 2 2 1 Transposase DDE domain TPP_enzyme_C PF02775.16 gi|397780498|ref|YP_006544971.1| - 3.2e-23 82.0 0.1 4.7e-23 81.4 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|397780498|ref|YP_006544971.1| - 0.093 11.6 0.0 0.16 10.8 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.14 gi|397780499|ref|YP_006544972.1| - 1.5e-70 237.2 0.6 1.9e-70 236.9 0.4 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|397780499|ref|YP_006544972.1| - 7.7e-07 29.0 0.1 2.1e-06 27.6 0.1 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|397780499|ref|YP_006544972.1| - 0.075 12.5 1.3 0.12 11.8 0.9 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DXP_redisom_C PF08436.7 gi|397780499|ref|YP_006544972.1| - 0.096 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Prok-E2_E PF14462.1 gi|397780499|ref|YP_006544972.1| - 0.13 11.8 0.1 0.27 10.8 0.1 1.5 1 0 0 1 1 1 0 Prokaryotic E2 family E POR PF01558.13 gi|397780500|ref|YP_006544973.1| - 5.1e-35 120.9 0.1 6.1e-35 120.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|397780501|ref|YP_006544974.1| - 1.1e-15 56.4 16.5 5.9e-08 31.9 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397780501|ref|YP_006544974.1| - 1.1e-12 48.1 32.5 7.6e-07 29.4 8.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397780501|ref|YP_006544974.1| - 1.4e-10 40.7 22.3 1.4e-07 31.1 8.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397780501|ref|YP_006544974.1| - 1.6e-10 40.3 13.7 2.3e-05 24.0 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|397780501|ref|YP_006544974.1| - 3.7e-10 39.1 12.0 8e-06 25.4 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|397780501|ref|YP_006544974.1| - 5.5e-09 36.6 9.8 0.00034 21.2 2.1 2.4 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|397780501|ref|YP_006544974.1| - 7.4e-09 35.3 11.6 0.00028 20.7 1.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397780501|ref|YP_006544974.1| - 1.6e-07 31.7 10.0 0.00047 20.6 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|397780501|ref|YP_006544974.1| - 2.8e-07 30.6 12.2 6.9e-07 29.4 8.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397780501|ref|YP_006544974.1| - 7.9e-06 25.7 12.6 0.0038 17.4 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397780501|ref|YP_006544974.1| - 1.1e-05 25.3 10.3 0.011 15.6 0.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|397780501|ref|YP_006544974.1| - 0.00013 22.2 12.2 0.0056 17.0 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|397780501|ref|YP_006544974.1| - 0.00015 22.0 11.4 0.012 15.9 1.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397780501|ref|YP_006544974.1| - 0.0007 19.9 12.9 0.017 15.5 1.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|397780501|ref|YP_006544974.1| - 0.0026 18.1 19.2 0.15 12.7 3.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain P68HR PF08061.6 gi|397780501|ref|YP_006544974.1| - 0.078 12.7 0.2 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 P68HR (NUC004) repeat GATA PF00320.22 gi|397780501|ref|YP_006544974.1| - 5.3 6.4 7.4 0.48 9.8 0.3 2.3 2 0 0 2 2 2 0 GATA zinc finger DZR PF12773.2 gi|397780502|ref|YP_006544975.1| - 0.00012 21.8 7.3 0.021 14.6 0.6 2.5 2 1 0 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|397780502|ref|YP_006544975.1| - 0.0011 18.4 8.1 3 7.4 0.0 4.3 4 0 0 4 4 4 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|397780502|ref|YP_006544975.1| - 0.0016 17.5 10.7 0.37 10.0 0.1 4.2 4 0 0 4 4 4 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|397780502|ref|YP_006544975.1| - 0.0022 17.6 5.7 0.13 11.9 0.5 2.4 2 0 0 2 2 2 2 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|397780502|ref|YP_006544975.1| - 0.0032 16.8 14.0 0.97 8.9 1.5 3.7 3 1 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.1 gi|397780502|ref|YP_006544975.1| - 0.01 15.4 9.9 0.19 11.4 1.3 2.7 2 1 0 2 2 2 0 Nudix N-terminal zf-ISL3 PF14690.1 gi|397780502|ref|YP_006544975.1| - 0.012 15.6 6.3 7 6.7 0.1 4.1 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF35_N PF12172.3 gi|397780502|ref|YP_006544975.1| - 0.012 15.4 14.4 0.62 10.0 0.3 4.4 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) FYVE PF01363.16 gi|397780502|ref|YP_006544975.1| - 0.018 14.9 3.7 0.018 14.9 2.5 2.5 1 1 1 2 2 2 0 FYVE zinc finger Zn-ribbon_8 PF09723.5 gi|397780502|ref|YP_006544975.1| - 0.02 14.8 9.4 0.48 10.4 0.7 3.0 2 2 0 2 2 2 0 Zinc ribbon domain DUF2082 PF09855.4 gi|397780502|ref|YP_006544975.1| - 0.026 14.3 0.5 0.026 14.3 0.4 3.2 3 1 1 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn_Tnp_IS1595 PF12760.2 gi|397780502|ref|YP_006544975.1| - 0.031 14.0 13.1 4.1 7.3 0.4 4.1 3 1 1 4 4 4 0 Transposase zinc-ribbon domain Elf1 PF05129.8 gi|397780502|ref|YP_006544975.1| - 0.035 13.8 6.0 0.41 10.3 0.3 2.5 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like HypA PF01155.14 gi|397780502|ref|YP_006544975.1| - 0.052 13.2 8.1 3.3 7.4 0.4 3.0 1 1 3 4 4 4 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|397780502|ref|YP_006544975.1| - 0.32 10.3 15.1 0.82 9.0 0.4 3.4 2 2 2 4 4 4 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|397780502|ref|YP_006544975.1| - 0.49 9.9 12.5 1.4 8.4 0.7 3.3 2 2 0 2 2 2 0 A2L zinc ribbon domain NMD3 PF04981.8 gi|397780502|ref|YP_006544975.1| - 0.59 9.2 4.9 0.71 8.9 0.2 2.0 1 1 1 2 2 2 0 NMD3 family DUF2387 PF09526.5 gi|397780502|ref|YP_006544975.1| - 0.86 9.5 4.8 2.1 8.3 0.3 2.3 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) RNA_POL_M_15KD PF02150.11 gi|397780502|ref|YP_006544975.1| - 0.94 9.2 0.1 0.94 9.2 0.0 3.8 4 0 0 4 4 4 0 RNA polymerases M/15 Kd subunit eIF-5_eIF-2B PF01873.12 gi|397780502|ref|YP_006544975.1| - 1.2 8.7 7.4 3.7 7.2 0.5 2.4 2 1 0 2 2 2 0 Domain found in IF2B/IF5 ATPase-cat_bd PF12156.3 gi|397780502|ref|YP_006544975.1| - 1.2 9.6 4.8 0.21 12.1 0.6 1.7 2 0 0 2 2 1 0 Putative metal-binding domain of cation transport ATPase DUF2318 PF10080.4 gi|397780502|ref|YP_006544975.1| - 1.3 8.8 8.5 0.2 11.4 0.4 2.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) zf-CCHC PF00098.18 gi|397780502|ref|YP_006544975.1| - 1.3 9.0 18.3 10 6.2 0.2 4.4 4 0 0 4 4 4 0 Zinc knuckle Lar_restr_allev PF14354.1 gi|397780502|ref|YP_006544975.1| - 1.6 9.1 13.3 6.2 7.1 2.3 3.7 1 1 1 2 2 2 0 Restriction alleviation protein Lar C1_1 PF00130.17 gi|397780502|ref|YP_006544975.1| - 1.7 8.4 9.5 6.8 6.5 0.4 3.1 2 1 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Baculo_ME53 PF06061.6 gi|397780502|ref|YP_006544975.1| - 1.9 7.4 4.5 5.9 5.7 0.6 2.1 2 0 0 2 2 2 0 Baculoviridae ME53 PHD_3 PF13922.1 gi|397780502|ref|YP_006544975.1| - 2.7 8.3 6.2 5.5 7.3 0.5 2.4 2 0 0 2 2 2 0 PHD domain of transcriptional enhancer, Asx UPF0547 PF10571.4 gi|397780502|ref|YP_006544975.1| - 3 7.6 15.1 11 5.7 0.1 4.3 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-CHY PF05495.7 gi|397780502|ref|YP_006544975.1| - 4.7 7.4 9.4 1.7e+02 2.4 6.3 2.3 1 1 1 2 2 2 0 CHY zinc finger zf-C4pol PF14260.1 gi|397780502|ref|YP_006544975.1| - 4.8 7.2 6.6 15 5.6 0.1 2.6 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta HSP20 PF00011.16 gi|397780503|ref|YP_006544976.1| - 4e-08 33.0 0.1 2e-06 27.6 0.1 2.0 1 1 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|397780503|ref|YP_006544976.1| - 0.028 13.8 0.0 0.032 13.6 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 CS PF04969.11 gi|397780503|ref|YP_006544976.1| - 0.041 14.4 0.0 0.058 13.9 0.0 1.3 1 0 0 1 1 1 0 CS domain Thioredox_DsbH PF03190.10 gi|397780504|ref|YP_006544977.1| - 3.8e-71 238.0 0.0 6.4e-71 237.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|397780504|ref|YP_006544977.1| - 6.1e-12 45.3 0.0 1.5e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|397780504|ref|YP_006544977.1| - 8.3e-07 28.3 0.9 0.0011 18.0 0.1 2.2 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.9 gi|397780504|ref|YP_006544977.1| - 0.00046 19.6 0.4 0.033 13.5 0.1 2.6 2 1 1 3 3 3 1 Glycosyl hydrolase family 76 Thioredoxin_2 PF13098.1 gi|397780504|ref|YP_006544977.1| - 0.00078 19.6 0.0 0.0023 18.0 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like domain Prenyltrans_1 PF13243.1 gi|397780504|ref|YP_006544977.1| - 0.0011 18.9 0.2 1.9 8.5 0.0 2.7 3 0 0 3 3 3 2 Prenyltransferase-like C5-epim_C PF06662.8 gi|397780504|ref|YP_006544977.1| - 0.0019 17.5 1.1 0.72 9.1 0.0 2.6 3 0 0 3 3 3 2 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_88 PF07470.8 gi|397780504|ref|YP_006544977.1| - 0.011 14.7 0.2 4.5 6.2 0.0 2.4 2 0 0 2 2 2 0 Glycosyl Hydrolase Family 88 Prenyltrans_2 PF13249.1 gi|397780504|ref|YP_006544977.1| - 0.012 16.0 0.1 0.89 9.9 0.0 3.2 2 2 1 4 4 4 0 Prenyltransferase-like OsmC PF02566.14 gi|397780505|ref|YP_006544978.1| - 1.6e-22 79.5 0.0 3.2e-21 75.3 0.0 2.0 2 0 0 2 2 2 1 OsmC-like protein OrfB_IS605 PF01385.14 gi|397780507|ref|YP_006544980.1| - 4.2e-48 163.7 1.4 5.8e-48 163.2 0.9 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|397780507|ref|YP_006544980.1| - 4.5e-23 80.6 0.6 1.1e-22 79.4 0.4 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|397780507|ref|YP_006544980.1| - 1.2e-17 62.8 1.7 2.7e-17 61.8 1.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4192 PF13830.1 gi|397780509|ref|YP_006544982.1| - 0.0086 15.7 0.1 0.01 15.5 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4192) PRC PF05239.11 gi|397780510|ref|YP_006544983.1| - 3e-11 43.0 0.1 4.2e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 PRC-barrel domain DUF521 PF04412.8 gi|397780512|ref|YP_006544985.1| - 3.8e-146 486.7 0.2 4.3e-146 486.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF539 PF04400.8 gi|397780512|ref|YP_006544985.1| - 0.054 12.9 0.1 3.4 7.2 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF539) UbiD PF01977.11 gi|397780513|ref|YP_006544986.1| - 4.1e-111 371.3 0.9 4.8e-111 371.1 0.7 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Flavoprotein PF02441.14 gi|397780514|ref|YP_006544987.1| - 9.1e-28 96.5 0.0 1.3e-27 96.0 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein HD PF01966.17 gi|397780515|ref|YP_006544988.1| - 1.4e-14 54.1 0.5 3.5e-14 52.8 0.3 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|397780515|ref|YP_006544988.1| - 0.0032 16.7 0.0 0.046 12.9 0.0 2.3 2 0 0 2 2 2 1 HDOD domain UPF0052 PF01933.13 gi|397780516|ref|YP_006544989.1| - 6.7e-22 78.1 0.0 8.6e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 UPF0052 PF01933.13 gi|397780517|ref|YP_006544990.1| - 5.6e-47 160.5 0.0 7.9e-47 160.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 NifU_N PF01592.11 gi|397780518|ref|YP_006544991.1| - 3.7e-49 165.8 0.0 4.1e-49 165.7 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain TusA PF01206.12 gi|397780519|ref|YP_006544992.1| - 5.4e-10 38.7 0.1 6.9e-10 38.3 0.1 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA PvlArgDC PF01862.11 gi|397780520|ref|YP_006544993.1| - 9.9e-65 217.1 0.0 1.1e-64 216.9 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DICT PF10069.4 gi|397780520|ref|YP_006544993.1| - 0.014 14.9 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 Sensory domain found in DIguanylate Cyclases & Two-component systems tRNA-synt_2 PF00152.15 gi|590000664|ref|YP_006544994.2| - 8.4e-93 310.7 0.0 1.1e-92 310.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|590000664|ref|YP_006544994.2| - 1.2e-14 53.8 0.4 2e-14 53.1 0.3 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|590000664|ref|YP_006544994.2| - 0.00062 19.0 0.2 0.013 14.6 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) Meth_synt_2 PF01717.13 gi|397780522|ref|YP_006544995.1| - 7.1e-61 205.9 0.8 7.3e-60 202.6 0.5 2.3 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|397780522|ref|YP_006544995.1| - 6.8e-10 38.6 0.0 1.3e-09 37.7 0.0 1.4 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|397780522|ref|YP_006544995.1| - 0.0019 17.1 0.0 0.0031 16.4 0.0 1.4 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) KaiC PF06745.8 gi|397780523|ref|YP_006544996.1| - 1.4e-12 47.1 0.1 2e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 KaiC AMP-binding PF00501.23 gi|397780524|ref|YP_006544997.1| - 2.2e-101 339.2 0.2 2.6e-101 339.0 0.2 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|397780524|ref|YP_006544997.1| - 1.8e-17 64.0 1.3 6.5e-17 62.2 0.1 2.4 2 1 0 2 2 2 1 AMP-binding enzyme C-terminal domain MreB_Mbl PF06723.8 gi|397780524|ref|YP_006544997.1| - 0.0018 16.9 0.2 0.0034 16.0 0.0 1.4 2 0 0 2 2 2 1 MreB/Mbl protein CN_hydrolase PF00795.17 gi|397780524|ref|YP_006544997.1| - 0.13 11.6 0.0 0.23 10.7 0.0 1.4 1 0 0 1 1 1 0 Carbon-nitrogen hydrolase Peptidase_S41 PF03572.13 gi|397780525|ref|YP_006544998.1| - 3.4e-12 46.0 0.0 5.4e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S41 PDZ_2 PF13180.1 gi|397780525|ref|YP_006544998.1| - 4.2e-05 23.3 0.0 0.0011 18.7 0.0 2.4 2 0 0 2 2 2 1 PDZ domain Tricorn_C1 PF14684.1 gi|397780525|ref|YP_006544998.1| - 9e-05 22.2 0.0 0.00022 21.0 0.0 1.7 1 0 0 1 1 1 1 Tricorn protease C1 domain PDZ PF00595.19 gi|397780525|ref|YP_006544998.1| - 0.0017 18.5 0.0 0.003 17.6 0.0 1.4 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) PQQ_3 PF13570.1 gi|397780525|ref|YP_006544998.1| - 0.11 12.7 1.9 2.6 8.4 0.3 3.4 3 0 0 3 3 3 0 PQQ-like domain AAA PF00004.24 gi|397780527|ref|YP_006545000.1| - 5.2e-98 324.3 0.0 1.7e-49 167.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|397780527|ref|YP_006545000.1| - 1.9e-25 88.5 0.0 7.6e-25 86.6 0.0 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|397780527|ref|YP_006545000.1| - 2.8e-14 52.7 0.0 1.8e-06 27.1 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|397780527|ref|YP_006545000.1| - 1.7e-13 50.9 0.1 1.2e-06 28.6 0.0 3.0 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|397780527|ref|YP_006545000.1| - 3.2e-12 46.7 0.7 0.00049 20.2 0.1 4.6 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|397780527|ref|YP_006545000.1| - 3e-11 43.2 1.3 0.00043 20.0 0.0 4.0 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|397780527|ref|YP_006545000.1| - 4.7e-11 42.0 0.0 0.00042 19.1 0.0 3.1 4 0 0 4 4 3 2 TIP49 C-terminus AAA_17 PF13207.1 gi|397780527|ref|YP_006545000.1| - 6.3e-11 43.1 0.0 0.00038 21.2 0.0 3.1 2 1 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|397780527|ref|YP_006545000.1| - 2.1e-09 37.5 0.0 5.4e-05 23.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|397780527|ref|YP_006545000.1| - 2.5e-09 37.1 0.0 0.0014 18.5 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.1 gi|397780527|ref|YP_006545000.1| - 2.7e-09 36.6 0.9 0.0024 17.6 0.0 3.0 2 0 0 2 2 2 2 Part of AAA domain AAA_14 PF13173.1 gi|397780527|ref|YP_006545000.1| - 2.5e-08 33.8 0.0 0.0008 19.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|397780527|ref|YP_006545000.1| - 5.3e-08 32.3 0.2 3e-07 29.9 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 IstB_IS21 PF01695.12 gi|397780527|ref|YP_006545000.1| - 6e-08 32.3 0.9 0.0068 15.8 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|397780527|ref|YP_006545000.1| - 6.2e-08 33.0 0.1 0.02 15.2 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_25 PF13481.1 gi|397780527|ref|YP_006545000.1| - 1.8e-07 30.7 5.8 0.077 12.3 0.2 4.3 2 2 1 3 3 3 3 AAA domain AAA_28 PF13521.1 gi|397780527|ref|YP_006545000.1| - 1.8e-07 31.2 0.0 0.0088 16.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|397780527|ref|YP_006545000.1| - 3.2e-07 29.6 0.0 0.02 14.0 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin Mg_chelatase PF01078.16 gi|397780527|ref|YP_006545000.1| - 1.1e-06 27.9 0.8 0.04 13.0 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|397780527|ref|YP_006545000.1| - 1.4e-06 28.3 0.0 0.036 14.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|397780527|ref|YP_006545000.1| - 3.3e-06 27.2 0.0 0.11 12.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase KaiC PF06745.8 gi|397780527|ref|YP_006545000.1| - 7.6e-06 25.1 0.7 0.34 9.9 0.0 3.4 2 1 1 3 3 3 2 KaiC Parvo_NS1 PF01057.12 gi|397780527|ref|YP_006545000.1| - 7.7e-06 24.9 0.1 0.044 12.6 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.21 gi|397780527|ref|YP_006545000.1| - 1.1e-05 25.0 0.0 0.17 11.3 0.0 2.9 3 0 0 3 3 3 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|397780527|ref|YP_006545000.1| - 1.3e-05 24.8 0.3 0.16 11.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|397780527|ref|YP_006545000.1| - 8.8e-05 22.2 0.4 1.8 8.1 0.0 4.2 3 1 0 3 3 3 1 NACHT domain ABC_tran PF00005.22 gi|397780527|ref|YP_006545000.1| - 0.00016 21.9 0.0 0.48 10.7 0.0 2.8 2 0 0 2 2 2 2 ABC transporter ResIII PF04851.10 gi|397780527|ref|YP_006545000.1| - 0.00018 21.4 0.0 1 9.1 0.0 3.2 2 1 0 3 3 3 1 Type III restriction enzyme, res subunit AAA_3 PF07726.6 gi|397780527|ref|YP_006545000.1| - 0.00024 20.6 0.0 0.58 9.7 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|397780527|ref|YP_006545000.1| - 0.00025 20.8 0.3 0.69 9.5 0.0 3.7 2 2 0 3 3 3 1 Archaeal ATPase PhoH PF02562.11 gi|397780527|ref|YP_006545000.1| - 0.00035 19.8 2.5 0.52 9.4 0.0 2.8 3 0 0 3 3 2 2 PhoH-like protein DUF815 PF05673.8 gi|397780527|ref|YP_006545000.1| - 0.00035 19.5 0.0 0.21 10.4 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|397780527|ref|YP_006545000.1| - 0.00048 19.1 0.0 0.82 8.5 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|397780527|ref|YP_006545000.1| - 0.00069 18.5 0.0 0.74 8.6 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_11 PF13086.1 gi|397780527|ref|YP_006545000.1| - 0.00093 18.8 0.0 1.2 8.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain IPT PF01745.11 gi|397780527|ref|YP_006545000.1| - 0.0014 17.8 0.3 1.2 8.2 0.0 2.4 2 0 0 2 2 2 2 Isopentenyl transferase UPF0079 PF02367.12 gi|397780527|ref|YP_006545000.1| - 0.002 17.7 0.1 2 8.0 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|397780527|ref|YP_006545000.1| - 0.0021 17.6 0.0 1.8 8.0 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain SKI PF01202.17 gi|397780527|ref|YP_006545000.1| - 0.0024 17.7 0.0 1.3 8.8 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase NTPase_1 PF03266.10 gi|397780527|ref|YP_006545000.1| - 0.0034 17.0 2.1 5.8 6.6 0.0 4.1 3 1 1 4 4 4 0 NTPase Cytidylate_kin2 PF13189.1 gi|397780527|ref|YP_006545000.1| - 0.004 17.0 0.0 0.59 10.0 0.0 2.7 2 0 0 2 2 2 1 Cytidylate kinase-like family AAA_30 PF13604.1 gi|397780527|ref|YP_006545000.1| - 0.0047 16.5 0.5 4.8 6.7 0.0 3.0 3 0 0 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|397780527|ref|YP_006545000.1| - 0.0054 17.0 0.0 2.5 8.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain KAP_NTPase PF07693.9 gi|397780527|ref|YP_006545000.1| - 0.026 13.5 0.1 1.1 8.1 0.0 2.7 2 1 0 3 3 3 0 KAP family P-loop domain DEAD PF00270.24 gi|397780527|ref|YP_006545000.1| - 0.036 13.5 0.0 58 3.1 0.0 4.0 4 0 0 4 4 4 0 DEAD/DEAH box helicase AAA_29 PF13555.1 gi|397780527|ref|YP_006545000.1| - 0.079 12.5 0.0 13 5.3 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF927 PF06048.6 gi|397780527|ref|YP_006545000.1| - 0.1 11.8 0.0 7.3 5.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF927) AAA_21 PF13304.1 gi|397780527|ref|YP_006545000.1| - 0.68 9.8 1.3 33 4.3 0.0 3.0 3 1 1 4 4 3 0 AAA domain DUF111 PF01969.12 gi|397780528|ref|YP_006545001.1| - 4.5e-116 387.8 0.1 5.1e-116 387.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 DUF2513 PF10711.4 gi|397780528|ref|YP_006545001.1| - 0.068 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Rad51 PF08423.6 gi|397780529|ref|YP_006545002.1| - 1.2e-24 86.5 0.0 1.6e-24 86.2 0.0 1.1 1 0 0 1 1 1 1 Rad51 KaiC PF06745.8 gi|397780529|ref|YP_006545002.1| - 1.7e-15 56.7 0.0 4.5e-15 55.3 0.0 1.7 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|397780529|ref|YP_006545002.1| - 1.4e-13 50.7 0.0 2e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|397780529|ref|YP_006545002.1| - 2.2e-10 40.1 0.0 2.7e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.7 gi|397780529|ref|YP_006545002.1| - 0.00015 21.3 0.0 0.00033 20.1 0.0 1.4 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_10 PF12846.2 gi|397780529|ref|YP_006545002.1| - 0.0039 16.6 0.0 0.0056 16.1 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|397780529|ref|YP_006545002.1| - 0.013 15.6 0.1 0.17 12.0 0.1 2.5 1 1 1 2 2 2 0 AAA domain DnaB_C PF03796.10 gi|397780529|ref|YP_006545002.1| - 0.059 12.2 0.0 3 6.6 0.0 2.2 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_17 PF13207.1 gi|397780529|ref|YP_006545002.1| - 0.11 13.3 0.4 0.6 10.9 0.2 2.2 1 1 0 1 1 1 0 AAA domain DAP_epimerase PF01678.14 gi|397780530|ref|YP_006545003.1| - 3.3e-54 181.9 2.2 1.6e-30 105.5 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|397780530|ref|YP_006545003.1| - 0.00011 21.1 0.9 0.0017 17.2 0.7 2.0 1 1 0 1 1 1 1 Proline racemase Antitoxin-MazE PF04014.13 gi|397780530|ref|YP_006545003.1| - 0.14 11.8 0.2 2.1 8.1 0.0 2.4 2 0 0 2 2 2 0 Antidote-toxin recognition MazE Fic PF02661.13 gi|397780533|ref|YP_006545006.1| - 0.00029 21.4 0.1 0.0022 18.6 0.0 2.3 1 1 0 1 1 1 1 Fic/DOC family Plasmid_stabil PF05016.9 gi|397780534|ref|YP_006545007.1| - 1.8e-08 34.6 0.1 2e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein DUF217 PF02697.9 gi|397780535|ref|YP_006545008.1| - 0.0011 19.2 0.8 0.0033 17.6 0.6 1.8 1 1 0 1 1 1 1 Uncharacterized ACR, COG1753 DUF3829 PF12889.2 gi|397780535|ref|YP_006545008.1| - 0.004 16.3 0.0 0.0046 16.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3829) Pox_A_type_inc PF04508.7 gi|397780535|ref|YP_006545008.1| - 0.13 12.1 2.1 0.23 11.3 0.1 2.3 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat DUF465 PF04325.8 gi|397780535|ref|YP_006545008.1| - 0.18 11.5 2.5 2.4 7.9 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF465) RNA_pol_L_2 PF13656.1 gi|397780537|ref|YP_006545010.1| - 6.9e-13 47.8 0.0 8.1e-13 47.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|397780537|ref|YP_006545010.1| - 1.2e-06 27.5 0.0 1.6e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Methyltransf_11 PF08241.7 gi|397780538|ref|YP_006545011.1| - 8.4e-18 64.6 0.0 1.3e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397780538|ref|YP_006545011.1| - 2.3e-10 41.0 0.1 3.6e-10 40.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|397780538|ref|YP_006545011.1| - 3.1e-10 40.3 0.0 4.4e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397780538|ref|YP_006545011.1| - 1.6e-07 31.6 0.0 2.5e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|397780538|ref|YP_006545011.1| - 8.4e-07 29.0 0.4 3.2e-06 27.1 0.3 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397780538|ref|YP_006545011.1| - 9.2e-07 28.5 0.0 1.1e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397780538|ref|YP_006545011.1| - 1.4e-06 28.1 0.0 1.7e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|397780538|ref|YP_006545011.1| - 4.3e-05 22.7 0.0 5.7e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|397780538|ref|YP_006545011.1| - 0.0013 17.8 0.0 0.0017 17.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|397780538|ref|YP_006545011.1| - 0.0013 18.1 0.0 0.0021 17.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|397780538|ref|YP_006545011.1| - 0.0066 15.6 0.2 0.011 14.8 0.1 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|397780538|ref|YP_006545011.1| - 0.035 13.7 0.0 0.057 13.0 0.0 1.5 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_16 PF10294.4 gi|397780538|ref|YP_006545011.1| - 0.13 11.7 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase eIF-5_eIF-2B PF01873.12 gi|397780540|ref|YP_006545012.1| - 2.3e-37 127.4 0.0 3.3e-37 126.9 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|397780540|ref|YP_006545012.1| - 0.002 17.8 0.1 0.0058 16.4 0.0 1.8 2 0 0 2 2 2 1 TRAM domain Zn-ribbon_8 PF09723.5 gi|397780540|ref|YP_006545012.1| - 0.002 18.0 0.5 0.0033 17.3 0.3 1.4 1 0 0 1 1 1 1 Zinc ribbon domain CDC48_N PF02359.13 gi|397780540|ref|YP_006545012.1| - 0.078 12.9 0.1 0.51 10.3 0.0 2.1 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain DNA_RNApol_7kD PF03604.8 gi|397780540|ref|YP_006545012.1| - 0.71 9.3 6.2 2.1 7.9 4.3 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit AIRS PF00586.19 gi|397780539|ref|YP_006545013.1| - 4.4e-44 148.6 1.0 4.2e-25 87.8 0.1 3.1 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|397780539|ref|YP_006545013.1| - 3.3e-35 121.3 4.2 2.5e-24 86.0 0.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain Flavodoxin_4 PF12682.2 gi|397780541|ref|YP_006545014.1| - 1.3e-09 37.5 0.0 1.6e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|397780541|ref|YP_006545014.1| - 3.8e-09 36.6 0.0 0.00077 19.4 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain FMN_red PF03358.10 gi|397780541|ref|YP_006545014.1| - 3e-07 30.0 0.1 3.6e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|397780541|ref|YP_006545014.1| - 0.0033 17.4 0.1 0.0086 16.0 0.1 2.0 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_2 PF02525.12 gi|397780541|ref|YP_006545014.1| - 0.0078 15.7 0.0 0.016 14.7 0.0 1.7 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_3 PF12641.2 gi|397780541|ref|YP_006545014.1| - 0.015 14.7 0.0 0.34 10.3 0.0 2.1 1 1 1 2 2 2 0 Flavodoxin domain Phage-tail_3 PF13550.1 gi|397780541|ref|YP_006545014.1| - 0.068 12.9 0.3 0.24 11.1 0.2 1.8 1 1 0 1 1 1 0 Putative phage tail protein IlvN PF07991.7 gi|397780542|ref|YP_006545015.1| - 1.9e-76 255.0 0.0 2.5e-76 254.6 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|397780542|ref|YP_006545015.1| - 2.7e-57 192.7 0.1 3.6e-57 192.3 0.1 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|397780542|ref|YP_006545015.1| - 2.3e-07 30.8 0.0 4.9e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|397780542|ref|YP_006545015.1| - 1.6e-06 27.4 0.0 3e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|397780542|ref|YP_006545015.1| - 5.7e-05 23.0 0.0 0.00011 22.1 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|397780542|ref|YP_006545015.1| - 0.00034 20.9 0.0 0.00073 19.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|397780542|ref|YP_006545015.1| - 0.01 15.2 0.1 0.019 14.3 0.1 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GCHY-1 PF02649.9 gi|397780543|ref|YP_006545016.1| - 1.8e-88 296.3 2.0 2.1e-88 296.1 1.4 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.13 gi|397780543|ref|YP_006545016.1| - 0.016 15.3 0.2 0.64 10.2 0.0 2.8 2 1 1 3 3 3 0 Dihydroneopterin aldolase DUF3223 PF11523.3 gi|397780543|ref|YP_006545016.1| - 0.12 12.6 0.2 7.1 6.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3223) NiFeSe_Hases PF00374.14 gi|397780544|ref|YP_006545017.1| - 2.4e-37 128.9 6.2 3.8e-15 55.6 0.1 3.8 2 1 1 3 3 3 3 Nickel-dependent hydrogenase HycI PF01750.13 gi|397780545|ref|YP_006545018.1| - 8.7e-30 102.9 0.0 1e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Oxidored_q6 PF01058.17 gi|590000665|ref|YP_006545019.2| - 1.3e-22 79.7 0.7 1.3e-22 79.7 0.5 1.8 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|590000665|ref|YP_006545019.2| - 3.5e-12 45.3 17.8 5.1e-07 29.0 2.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|590000665|ref|YP_006545019.2| - 4.9e-09 35.8 10.3 4.9e-09 35.8 7.1 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|590000665|ref|YP_006545019.2| - 5.3e-08 33.1 23.9 5.5e-07 29.8 9.0 2.9 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|590000665|ref|YP_006545019.2| - 1.1e-07 32.0 10.8 1.1e-07 32.0 7.5 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|590000665|ref|YP_006545019.2| - 1.4e-07 31.1 17.8 2.9e-05 23.7 1.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|590000665|ref|YP_006545019.2| - 4.8e-07 29.6 18.0 9.3e-05 22.3 8.0 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|590000665|ref|YP_006545019.2| - 4.9e-06 26.1 17.7 0.0069 16.2 1.9 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|590000665|ref|YP_006545019.2| - 7.6e-06 25.6 17.3 0.0017 18.2 0.2 3.6 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|590000665|ref|YP_006545019.2| - 1.3e-05 25.8 8.7 0.0076 16.9 0.6 3.1 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|590000665|ref|YP_006545019.2| - 1.4e-05 25.3 8.0 0.0021 18.3 0.3 3.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|590000665|ref|YP_006545019.2| - 0.0013 19.2 14.8 0.016 15.7 0.4 3.5 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|590000665|ref|YP_006545019.2| - 0.011 16.0 1.3 0.011 16.0 0.9 4.1 5 0 0 5 5 3 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|590000665|ref|YP_006545019.2| - 0.033 14.5 23.0 0.047 14.0 1.8 3.4 2 2 2 4 4 4 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.8 gi|397780547|ref|YP_006545020.1| - 9.8e-48 161.6 0.0 1.7e-47 160.8 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|397780547|ref|YP_006545020.1| - 7.2e-37 125.1 0.0 1.2e-36 124.3 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term AdoMet_dc PF02675.10 gi|397780548|ref|YP_006545021.1| - 5.6e-19 68.0 0.0 9.1e-19 67.3 0.0 1.3 2 0 0 2 2 2 1 S-adenosylmethionine decarboxylase RIIa PF02197.12 gi|397780548|ref|YP_006545021.1| - 0.11 11.9 0.2 0.19 11.1 0.1 1.3 1 0 0 1 1 1 0 Regulatory subunit of type II PKA R-subunit LigD_N PF13298.1 gi|397780549|ref|YP_006545022.1| - 4.4e-43 145.6 0.0 5.8e-43 145.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) eIF-1a PF01176.14 gi|397780549|ref|YP_006545022.1| - 0.067 12.6 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 DUF2118 PF09891.4 gi|397780549|ref|YP_006545022.1| - 0.086 12.5 0.3 0.13 11.9 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) AAA_10 PF12846.2 gi|397780550|ref|YP_006545023.1| - 8.8e-26 91.0 0.1 1.4e-25 90.4 0.1 1.3 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|397780550|ref|YP_006545023.1| - 2.4e-07 30.8 0.1 4.8e-06 26.5 0.0 2.4 3 0 0 3 3 3 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|397780550|ref|YP_006545023.1| - 4.2e-07 28.9 0.0 0.00075 18.2 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|397780550|ref|YP_006545023.1| - 1.1e-06 28.2 0.0 7.1e-05 22.3 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF853 PF05872.7 gi|397780550|ref|YP_006545023.1| - 1.6e-06 26.7 0.0 4e-05 22.1 0.0 2.0 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_19 PF13245.1 gi|397780550|ref|YP_006545023.1| - 0.00022 20.9 0.0 0.00088 18.9 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|397780550|ref|YP_006545023.1| - 0.0013 18.9 0.0 0.21 11.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain Zot PF05707.7 gi|397780550|ref|YP_006545023.1| - 0.0054 16.2 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) Pox_A32 PF04665.7 gi|397780550|ref|YP_006545023.1| - 0.12 11.6 0.1 9.7 5.4 0.0 2.2 2 0 0 2 2 2 0 Poxvirus A32 protein AAA PF00004.24 gi|397780550|ref|YP_006545023.1| - 0.15 12.2 0.7 16 5.6 0.0 2.8 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|397780550|ref|YP_006545023.1| - 0.27 10.7 0.0 1.6 8.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain HATPase_c PF02518.21 gi|397780551|ref|YP_006545024.1| - 2e-23 82.2 0.0 3.9e-23 81.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|397780551|ref|YP_006545024.1| - 3.3e-11 43.4 0.0 7.4e-11 42.3 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|397780551|ref|YP_006545024.1| - 1.4e-10 41.2 0.2 7.2e-10 38.8 0.1 2.1 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|397780551|ref|YP_006545024.1| - 4.4e-08 32.8 0.0 1.1e-07 31.5 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|397780551|ref|YP_006545024.1| - 1e-07 31.9 0.0 2e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|397780551|ref|YP_006545024.1| - 8.2e-06 25.6 0.0 1.6e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF4118 PF13493.1 gi|397780551|ref|YP_006545024.1| - 9.8e-05 22.4 12.1 0.00016 21.8 8.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HisKA PF00512.20 gi|397780551|ref|YP_006545024.1| - 0.0036 17.2 0.2 0.013 15.4 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|397780551|ref|YP_006545024.1| - 0.0064 16.3 0.0 0.02 14.7 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.1 gi|397780551|ref|YP_006545024.1| - 0.061 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 GHKL domain DUF2124 PF09897.4 gi|590000667|ref|YP_006545025.2| - 5.2e-52 175.4 0.0 5.8e-52 175.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Methyltransf_18 PF12847.2 gi|397780554|ref|YP_006545027.1| - 4.5e-11 43.3 0.0 9.2e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397780554|ref|YP_006545027.1| - 1.1e-07 31.5 0.0 1.6e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397780554|ref|YP_006545027.1| - 4.1e-07 29.8 0.0 6.4e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|397780554|ref|YP_006545027.1| - 4.4e-07 29.1 0.0 6.3e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.1 gi|397780554|ref|YP_006545027.1| - 1.1e-05 25.6 0.0 2.3e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|397780554|ref|YP_006545027.1| - 3e-05 24.4 0.0 5.3e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|397780554|ref|YP_006545027.1| - 4e-05 23.0 0.0 6.9e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain GidB PF02527.10 gi|397780554|ref|YP_006545027.1| - 8.8e-05 21.7 0.0 0.00014 21.0 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_12 PF08242.7 gi|397780554|ref|YP_006545027.1| - 0.00012 22.4 0.0 0.0002 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|397780554|ref|YP_006545027.1| - 0.00023 21.1 0.0 0.00039 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|397780554|ref|YP_006545027.1| - 0.0072 15.0 0.0 0.0099 14.5 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase PCMT PF01135.14 gi|397780554|ref|YP_006545027.1| - 0.011 15.3 0.0 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|397780554|ref|YP_006545027.1| - 0.023 13.7 0.0 0.03 13.3 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|397780554|ref|YP_006545027.1| - 0.2 10.7 1.1 0.76 8.8 0.0 2.0 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) CbiA PF01656.18 gi|397780555|ref|YP_006545028.1| - 4.9e-19 68.5 0.0 6.5e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|397780555|ref|YP_006545028.1| - 5e-08 33.0 0.0 3.8e-07 30.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|397780555|ref|YP_006545028.1| - 4.1e-05 24.3 0.1 6.3e-05 23.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|397780555|ref|YP_006545028.1| - 4.9e-05 22.5 0.7 6.6e-05 22.0 0.0 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|397780555|ref|YP_006545028.1| - 5.3e-05 22.5 0.8 0.0012 18.0 0.6 2.1 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_10 PF12846.2 gi|397780555|ref|YP_006545028.1| - 0.00027 20.5 0.0 0.00054 19.4 0.0 1.5 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|397780555|ref|YP_006545028.1| - 0.00035 20.0 0.4 0.0019 17.6 0.3 2.1 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|397780555|ref|YP_006545028.1| - 0.0014 17.9 0.0 0.0023 17.2 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 MobB PF03205.9 gi|397780555|ref|YP_006545028.1| - 0.002 17.8 0.0 0.0048 16.6 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.15 gi|397780555|ref|YP_006545028.1| - 0.0046 16.6 0.0 0.0067 16.0 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase DUF87 PF01935.12 gi|397780555|ref|YP_006545028.1| - 0.0052 16.6 0.0 0.0077 16.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 Zeta_toxin PF06414.7 gi|397780555|ref|YP_006545028.1| - 0.0063 15.6 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin MipZ PF09140.6 gi|397780555|ref|YP_006545028.1| - 0.01 14.9 0.2 0.11 11.5 0.0 2.0 2 0 0 2 2 2 0 ATPase MipZ ABC_tran PF00005.22 gi|397780555|ref|YP_006545028.1| - 0.017 15.4 0.0 0.027 14.7 0.0 1.3 1 0 0 1 1 1 0 ABC transporter SRP54 PF00448.17 gi|397780555|ref|YP_006545028.1| - 0.027 13.9 0.2 0.06 12.7 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|397780555|ref|YP_006545028.1| - 0.036 14.0 0.0 0.061 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|397780555|ref|YP_006545028.1| - 0.037 14.3 0.0 0.055 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|397780555|ref|YP_006545028.1| - 0.051 14.0 0.0 0.17 12.4 0.0 1.8 2 0 0 2 2 2 0 Miro-like protein AAA_22 PF13401.1 gi|397780555|ref|YP_006545028.1| - 0.094 12.8 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|397780555|ref|YP_006545028.1| - 0.11 11.0 0.4 0.24 9.9 0.0 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.12 gi|397780555|ref|YP_006545028.1| - 0.16 11.3 0.0 0.61 9.4 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|397780555|ref|YP_006545028.1| - 0.16 11.5 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Flavin_Reduct PF01613.13 gi|397780556|ref|YP_006545029.1| - 1.4e-18 67.2 0.0 1.8e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|397780556|ref|YP_006545029.1| - 0.014 14.9 0.0 0.02 14.4 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF447) Glyoxalase_4 PF13669.1 gi|397780557|ref|YP_006545030.1| - 0.027 14.4 0.0 0.071 13.1 0.0 1.7 1 1 1 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily polyprenyl_synt PF00348.12 gi|397780558|ref|YP_006545031.1| - 5.1e-31 107.4 0.0 7.6e-31 106.8 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase APH PF01636.18 gi|397780559|ref|YP_006545032.1| - 6.9e-11 42.3 1.2 6.9e-11 42.3 0.8 1.6 1 1 1 2 2 2 1 Phosphotransferase enzyme family HAD_2 PF13419.1 gi|397780560|ref|YP_006545033.1| - 4.9e-24 85.5 0.1 6.1e-24 85.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|397780560|ref|YP_006545033.1| - 1.4e-09 37.5 0.0 6.3e-09 35.4 0.0 2.0 2 1 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|397780560|ref|YP_006545033.1| - 1e-05 26.0 0.0 0.00016 22.1 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase OrfB_Zn_ribbon PF07282.6 gi|397780561|ref|YP_006545034.1| - 1.1e-21 76.2 0.2 1.7e-21 75.6 0.1 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|397780561|ref|YP_006545034.1| - 0.00091 19.0 3.2 0.0019 18.0 2.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|397780561|ref|YP_006545034.1| - 0.0012 18.6 4.6 0.004 16.8 2.9 2.0 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.14 gi|397780561|ref|YP_006545034.1| - 0.024 14.3 0.2 0.04 13.5 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|397780561|ref|YP_006545034.1| - 0.064 12.9 5.3 0.14 11.8 0.1 2.7 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|397780561|ref|YP_006545034.1| - 0.11 11.7 9.0 0.11 11.7 4.2 2.3 1 1 2 3 3 3 0 zinc-ribbon domain C1_3 PF07649.7 gi|397780561|ref|YP_006545034.1| - 0.61 10.1 4.6 0.27 11.2 1.6 1.6 2 0 0 2 2 2 0 C1-like domain DUF1610 PF07754.6 gi|397780561|ref|YP_006545034.1| - 0.92 9.6 6.6 6.5 6.9 4.3 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) zf-FPG_IleRS PF06827.9 gi|397780561|ref|YP_006545034.1| - 1.1 8.9 6.4 2.7 7.7 4.4 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-NADH-PPase PF09297.6 gi|397780561|ref|YP_006545034.1| - 2.9 7.4 10.4 1.8e+02 1.7 7.3 2.9 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|397780561|ref|YP_006545034.1| - 9.1 6.1 7.2 52 3.7 5.0 2.0 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like GTP_EFTU PF00009.22 gi|590000668|ref|YP_006545037.2| - 3.7e-15 55.8 0.0 6e-14 51.9 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|590000668|ref|YP_006545037.2| - 8.7e-12 45.5 0.0 1.1e-11 45.2 0.0 1.1 1 0 0 1 1 1 1 Miro-like protein MMR_HSR1 PF01926.18 gi|590000668|ref|YP_006545037.2| - 4.8e-10 39.4 0.0 1.5e-09 37.7 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|590000668|ref|YP_006545037.2| - 2.8e-08 33.5 0.0 2.4e-06 27.3 0.0 2.1 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Ras PF00071.17 gi|590000668|ref|YP_006545037.2| - 8.5e-08 31.7 0.0 1.6e-07 30.8 0.0 1.5 1 1 0 1 1 1 1 Ras family Dynamin_N PF00350.18 gi|590000668|ref|YP_006545037.2| - 0.00014 21.7 0.3 0.00047 20.0 0.3 1.7 1 1 1 2 2 2 1 Dynamin family Arf PF00025.16 gi|590000668|ref|YP_006545037.2| - 0.00022 20.4 0.0 0.00028 20.1 0.0 1.2 1 0 0 1 1 1 1 ADP-ribosylation factor family FeoB_N PF02421.13 gi|590000668|ref|YP_006545037.2| - 0.0051 16.0 0.0 0.022 14.0 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B rpo132 PF12415.3 gi|590000668|ref|YP_006545037.2| - 0.0097 14.8 0.0 3.8 6.5 0.0 2.3 2 0 0 2 2 2 2 Poxvirus DNA dependent RNA polymerase SRPRB PF09439.5 gi|590000668|ref|YP_006545037.2| - 0.0098 15.1 0.0 0.011 14.9 0.0 1.1 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit IIGP PF05049.8 gi|590000668|ref|YP_006545037.2| - 0.1 11.4 0.1 0.13 11.0 0.1 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) HEAT_2 PF13646.1 gi|397780566|ref|YP_006545039.1| - 3.8e-35 120.0 10.1 1.6e-18 66.7 0.7 2.3 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.11 gi|397780566|ref|YP_006545039.1| - 9.1e-23 78.3 18.5 7.4e-08 32.1 0.2 4.7 4 1 0 4 4 4 4 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|397780566|ref|YP_006545039.1| - 6e-18 63.2 1.2 0.0019 18.1 0.0 5.2 5 0 0 5 5 5 3 HEAT repeat HEAT_EZ PF13513.1 gi|397780566|ref|YP_006545039.1| - 2.1e-16 59.8 12.1 4.1e-05 23.9 0.6 4.0 4 0 0 4 4 4 3 HEAT-like repeat Arm PF00514.18 gi|397780566|ref|YP_006545039.1| - 9.5e-13 47.4 0.4 0.0079 15.9 0.0 5.1 3 2 2 5 5 5 3 Armadillo/beta-catenin-like repeat UPF0147 PF03685.8 gi|397780566|ref|YP_006545039.1| - 0.0034 17.2 0.4 9.7 6.1 0.0 3.5 3 1 0 3 3 3 1 Uncharacterised protein family (UPF0147) Vac14_Fab1_bd PF12755.2 gi|397780566|ref|YP_006545039.1| - 0.015 15.6 0.0 2.1 8.8 0.0 3.0 2 1 0 2 2 2 0 Vacuolar 14 Fab1-binding region Vitellogenin_N PF01347.17 gi|397780566|ref|YP_006545039.1| - 0.11 10.7 0.0 0.41 8.8 0.0 1.7 1 1 0 2 2 2 0 Lipoprotein amino terminal region IFRD PF05004.8 gi|397780566|ref|YP_006545039.1| - 0.11 11.5 1.0 0.53 9.3 0.0 2.2 3 0 0 3 3 3 0 Interferon-related developmental regulator (IFRD) Aconitase_B_N PF11791.3 gi|397780566|ref|YP_006545039.1| - 0.14 11.9 0.0 4.5 7.0 0.0 2.3 2 1 0 2 2 2 0 Aconitate B N-terminal domain Lactamase_B PF00753.22 gi|397780567|ref|YP_006545040.1| - 9e-14 51.5 0.8 1.3e-13 51.0 0.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|397780567|ref|YP_006545040.1| - 5.8e-06 25.9 0.1 1.4e-05 24.7 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|397780567|ref|YP_006545040.1| - 0.15 11.7 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Na_H_Exchanger PF00999.16 gi|397780568|ref|YP_006545041.1| - 2.3e-48 164.6 42.9 3.1e-48 164.2 29.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|397780569|ref|YP_006545042.1| - 8.9e-11 41.2 0.4 1.8e-10 40.2 0.1 1.6 2 0 0 2 2 2 1 TrkA-C domain 2_5_RNA_ligase2 PF13563.1 gi|397780571|ref|YP_006545044.1| - 4.5e-06 26.4 0.0 7.7e-06 25.6 0.0 1.3 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|397780571|ref|YP_006545044.1| - 0.021 14.7 0.0 4.5 7.3 0.0 2.3 2 0 0 2 2 2 0 LigT like Phosphoesterase DUF1059 PF06348.6 gi|397780573|ref|YP_006545046.1| - 1.6e-14 53.4 0.3 2e-14 53.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) BBS2_C PF14782.1 gi|397780573|ref|YP_006545046.1| - 0.12 10.9 0.3 0.12 10.8 0.2 1.0 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, C-terminal DUF793 PF05633.6 gi|397780573|ref|YP_006545046.1| - 0.29 9.8 1.8 0.28 9.8 1.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF793) ABC_tran PF00005.22 gi|397780574|ref|YP_006545047.1| - 4.6e-33 114.4 0.0 6.2e-33 113.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780574|ref|YP_006545047.1| - 2.3e-11 44.2 0.1 1.2e-05 25.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397780574|ref|YP_006545047.1| - 0.0003 20.0 1.1 0.018 14.2 0.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|397780574|ref|YP_006545047.1| - 0.0015 18.4 0.3 0.017 15.0 0.2 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|397780574|ref|YP_006545047.1| - 0.0016 17.8 0.2 0.0035 16.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|397780574|ref|YP_006545047.1| - 0.014 15.6 2.2 0.17 12.2 0.3 2.3 1 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|397780574|ref|YP_006545047.1| - 0.036 13.4 0.0 0.16 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|397780574|ref|YP_006545047.1| - 0.065 13.2 1.4 0.12 12.3 1.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|397780574|ref|YP_006545047.1| - 0.067 12.3 0.1 0.21 10.7 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|397780574|ref|YP_006545047.1| - 0.077 12.1 0.1 0.13 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|397780574|ref|YP_006545047.1| - 0.083 13.7 3.2 0.3 11.9 2.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|397780574|ref|YP_006545047.1| - 0.099 12.7 0.3 0.81 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|397780574|ref|YP_006545047.1| - 0.13 11.6 0.1 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain MMR_HSR1 PF01926.18 gi|397780574|ref|YP_006545047.1| - 0.14 12.1 0.2 0.64 9.9 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF87 PF01935.12 gi|397780574|ref|YP_006545047.1| - 0.14 11.9 0.3 0.28 10.9 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_15 PF13175.1 gi|397780574|ref|YP_006545047.1| - 0.18 10.8 0.0 13 4.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain MacB_PCD PF12704.2 gi|590000669|ref|YP_006545048.2| - 2e-17 63.5 2.7 2e-17 63.5 1.9 2.2 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|590000669|ref|YP_006545048.2| - 1e-13 51.0 14.2 1e-13 51.0 9.8 2.1 2 0 0 2 2 2 1 FtsX-like permease family CARDB PF07705.6 gi|397780576|ref|YP_006545049.1| - 7.1e-14 51.6 1.1 8.6e-06 25.7 0.1 3.3 3 0 0 3 3 3 2 CARDB DUF11 PF01345.13 gi|397780576|ref|YP_006545049.1| - 3.7e-09 36.5 17.2 0.00059 19.8 0.7 4.4 3 1 1 4 4 4 3 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|397780576|ref|YP_006545049.1| - 5.5e-08 32.7 2.7 0.01 15.8 0.0 4.4 4 1 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|397780576|ref|YP_006545049.1| - 2e-05 23.8 0.4 0.017 14.3 0.0 2.8 3 0 0 3 3 3 2 Translocon-associated protein beta (TRAPB) A2M PF00207.17 gi|397780576|ref|YP_006545049.1| - 0.0015 18.0 0.1 0.17 11.4 0.0 2.8 3 0 0 3 3 3 1 Alpha-2-macroglobulin family Trs65 PF12735.2 gi|397780576|ref|YP_006545049.1| - 0.02 14.2 0.1 1 8.6 0.1 2.3 1 1 0 2 2 2 0 TRAPP trafficking subunit Trs65 Transglut_C PF00927.17 gi|397780576|ref|YP_006545049.1| - 0.03 14.3 0.0 1.9 8.5 0.0 2.5 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain DUF1573 PF07610.6 gi|397780576|ref|YP_006545049.1| - 0.17 11.4 0.3 9.8 5.8 0.0 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1573) Inhibitor_I42 PF09394.5 gi|397780577|ref|YP_006545050.1| - 1.6e-27 95.6 0.4 2.3e-27 95.1 0.3 1.2 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 PROL5-SMR PF15621.1 gi|397780577|ref|YP_006545050.1| - 0.041 14.3 0.0 0.056 13.8 0.0 1.2 1 0 0 1 1 1 0 Proline-rich submaxillary gland androgen-regulated family Ham1p_like PF01725.11 gi|397780578|ref|YP_006545051.1| - 3.1e-47 160.4 0.0 3.5e-47 160.2 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Peptidase_M22 PF00814.20 gi|397780579|ref|YP_006545052.1| - 1.3e-75 254.3 0.1 1.8e-75 253.8 0.1 1.1 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.18 gi|397780579|ref|YP_006545052.1| - 2.6e-09 37.1 0.4 2.5e-05 24.1 0.0 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|397780579|ref|YP_006545052.1| - 1.2e-08 34.5 0.0 2.3e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|397780579|ref|YP_006545052.1| - 5e-06 25.8 0.0 9.6e-06 24.9 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|397780579|ref|YP_006545052.1| - 2.9e-05 23.2 0.0 0.00055 19.0 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.12 gi|397780579|ref|YP_006545052.1| - 0.0063 15.6 0.0 0.01 14.9 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase EcKinase PF02958.15 gi|397780579|ref|YP_006545052.1| - 0.047 12.8 0.0 0.078 12.1 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase Choline_kinase PF01633.15 gi|397780579|ref|YP_006545052.1| - 0.15 11.6 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 Choline/ethanolamine kinase Ribosomal_S27 PF01599.14 gi|397780580|ref|YP_006545053.1| - 9.4e-18 63.7 6.4 1.2e-17 63.4 4.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a DZR PF12773.2 gi|397780580|ref|YP_006545053.1| - 0.009 15.8 2.1 0.013 15.2 1.4 1.4 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|397780580|ref|YP_006545053.1| - 0.01 15.2 0.1 0.019 14.3 0.1 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain IBR PF01485.16 gi|397780580|ref|YP_006545053.1| - 0.011 15.5 1.5 0.013 15.3 1.1 1.1 1 0 0 1 1 1 0 IBR domain DNA_RNApol_7kD PF03604.8 gi|397780580|ref|YP_006545053.1| - 0.021 14.2 3.0 0.049 13.1 1.6 1.9 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|397780580|ref|YP_006545053.1| - 0.023 14.3 1.0 0.058 13.0 0.7 1.7 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF2082 PF09855.4 gi|397780580|ref|YP_006545053.1| - 0.026 14.3 3.1 0.046 13.5 0.2 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Nudix_N_2 PF14803.1 gi|397780580|ref|YP_006545053.1| - 0.042 13.5 5.1 0.48 10.1 3.6 2.2 1 1 0 1 1 1 0 Nudix N-terminal Auto_anti-p27 PF06677.7 gi|397780580|ref|YP_006545053.1| - 0.044 13.5 3.9 0.08 12.7 2.8 1.5 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1451 PF07295.6 gi|397780580|ref|YP_006545053.1| - 0.054 13.2 2.1 0.054 13.2 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) OrfB_Zn_ribbon PF07282.6 gi|397780580|ref|YP_006545053.1| - 0.058 13.0 2.0 0.057 13.0 1.1 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|397780580|ref|YP_006545053.1| - 0.071 12.3 3.9 2.7 7.3 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|397780580|ref|YP_006545053.1| - 0.094 12.2 4.8 0.49 9.9 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|397780580|ref|YP_006545053.1| - 0.1 12.0 2.2 3.8 7.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Flavi_glycoprot PF00869.15 gi|397780580|ref|YP_006545053.1| - 0.11 11.5 0.8 0.11 11.4 0.5 1.0 1 0 0 1 1 1 0 Flavivirus glycoprotein, central and dimerisation domains DUF1936 PF09151.5 gi|397780580|ref|YP_006545053.1| - 0.12 11.8 1.1 0.12 11.8 0.8 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF1936) Prok-RING_1 PF14446.1 gi|397780580|ref|YP_006545053.1| - 0.17 11.6 4.4 0.072 12.8 1.1 1.8 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 FeS PF04060.8 gi|397780580|ref|YP_006545053.1| - 0.21 11.1 4.2 0.52 9.9 0.3 2.3 2 0 0 2 2 2 0 Putative Fe-S cluster Ribosomal_L37e PF01907.14 gi|397780580|ref|YP_006545053.1| - 0.22 11.3 4.6 0.25 11.1 2.6 1.7 1 1 0 1 1 1 0 Ribosomal protein L37e HypA PF01155.14 gi|397780580|ref|YP_006545053.1| - 0.29 10.8 1.8 0.32 10.7 1.3 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2_3 PF13878.1 gi|397780580|ref|YP_006545053.1| - 0.31 10.6 1.6 15 5.2 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO NOB1_Zn_bind PF08772.6 gi|397780580|ref|YP_006545053.1| - 0.33 10.7 3.4 0.98 9.2 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Lar_restr_allev PF14354.1 gi|397780580|ref|YP_006545053.1| - 0.46 10.8 4.8 0.3 11.4 2.0 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-HYPF PF07503.7 gi|397780580|ref|YP_006545053.1| - 0.82 9.1 3.8 4.7 6.7 0.4 2.2 2 0 0 2 2 2 0 HypF finger zinc_ribbon_4 PF13717.1 gi|397780580|ref|YP_006545053.1| - 0.88 9.3 4.2 3.4 7.4 0.1 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|397780580|ref|YP_006545053.1| - 0.95 9.0 4.3 3.4 7.3 0.1 2.4 2 1 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|397780580|ref|YP_006545053.1| - 1.1 9.2 6.1 14 5.7 3.3 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DUF2387 PF09526.5 gi|397780580|ref|YP_006545053.1| - 1.2 9.0 3.8 2.6 8.0 2.2 1.9 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) FYVE PF01363.16 gi|397780580|ref|YP_006545053.1| - 4 7.4 6.5 7.7 6.4 4.5 1.7 1 1 0 1 1 1 0 FYVE zinc finger zf-ISL3 PF14690.1 gi|397780580|ref|YP_006545053.1| - 7.8 6.6 8.7 2.8e+02 1.6 6.0 2.4 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|397780580|ref|YP_006545053.1| - 8.2 6.3 10.1 7.3 6.4 0.2 2.5 1 1 2 3 3 3 0 Transposase zinc-ribbon domain Ribosomal_S24e PF01282.14 gi|397780581|ref|YP_006545054.1| - 3.9e-25 87.4 0.0 4.9e-25 87.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Roughex PF06020.6 gi|397780581|ref|YP_006545054.1| - 0.067 11.8 0.0 0.078 11.6 0.0 1.1 1 0 0 1 1 1 0 Drosophila roughex protein DUF359 PF04019.7 gi|397780582|ref|YP_006545055.1| - 3.4e-38 129.7 0.0 4.2e-38 129.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.8 gi|397780583|ref|YP_006545056.1| - 1.6e-12 47.1 0.1 2.2e-12 46.6 0.1 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger PHF5 PF03660.9 gi|397780583|ref|YP_006545056.1| - 0.0016 18.4 0.6 0.0016 18.4 0.4 1.1 1 0 0 1 1 1 1 PHF5-like protein RecR PF02132.10 gi|397780583|ref|YP_006545056.1| - 0.087 12.2 1.4 0.13 11.7 1.0 1.3 1 0 0 1 1 1 0 RecR protein Prok-RING_2 PF14445.1 gi|397780583|ref|YP_006545056.1| - 0.5 10.3 2.3 0.94 9.4 1.7 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 2 SHS2_Rpb7-N PF03876.12 gi|397780584|ref|YP_006545057.1| - 3.5e-19 68.7 0.1 5.7e-19 68.0 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|397780584|ref|YP_006545057.1| - 2.3e-11 43.5 0.1 5.6e-11 42.3 0.0 1.7 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|397780584|ref|YP_006545057.1| - 0.0013 18.8 0.0 0.011 15.9 0.0 2.1 2 1 1 3 3 3 1 RNA polymerase III subunit Rpc25 Fcf1 PF04900.7 gi|397780585|ref|YP_006545058.1| - 2.2e-05 24.4 0.0 3e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN PF01850.16 gi|397780585|ref|YP_006545058.1| - 0.0043 17.3 0.0 0.17 12.2 0.0 2.1 1 1 0 1 1 1 1 PIN domain RNase_Zc3h12a PF11977.3 gi|397780585|ref|YP_006545058.1| - 0.0044 16.8 0.0 0.0057 16.5 0.0 1.2 1 0 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain DUF188 PF02639.9 gi|397780585|ref|YP_006545058.1| - 0.024 14.0 0.0 0.033 13.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 Mut7-C PF01927.11 gi|397780585|ref|YP_006545058.1| - 0.037 13.9 0.0 0.045 13.7 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain GTP_EFTU PF00009.22 gi|397780586|ref|YP_006545059.1| - 1.2e-41 142.2 0.0 2e-41 141.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|397780586|ref|YP_006545059.1| - 2e-29 101.4 0.3 5.8e-29 99.9 0.2 1.8 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|397780586|ref|YP_006545059.1| - 9.7e-09 35.2 0.9 3.2e-08 33.5 0.6 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|397780586|ref|YP_006545059.1| - 0.00085 19.2 0.0 0.0019 18.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase DnaJ_CXXCXGXG PF00684.14 gi|397780586|ref|YP_006545059.1| - 0.0019 18.1 1.1 0.0043 17.0 0.7 1.5 1 0 0 1 1 1 1 DnaJ central domain PduV-EutP PF10662.4 gi|397780586|ref|YP_006545059.1| - 0.0084 15.5 0.5 2.1 7.8 0.0 2.9 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|397780586|ref|YP_006545059.1| - 0.0095 16.4 0.0 0.022 15.2 0.0 1.7 1 1 0 1 1 1 1 Miro-like protein FeoB_N PF02421.13 gi|397780586|ref|YP_006545059.1| - 0.018 14.3 0.6 1.8 7.8 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B Nop10p PF04135.7 gi|397780586|ref|YP_006545059.1| - 0.028 14.1 0.2 0.057 13.1 0.2 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family TFIIS_C PF01096.13 gi|397780586|ref|YP_006545059.1| - 0.055 13.1 1.6 1.9 8.1 0.2 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) NikR_C PF08753.6 gi|397780587|ref|YP_006545060.1| - 3.6e-28 97.2 2.1 5.6e-28 96.6 1.4 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|397780587|ref|YP_006545060.1| - 4.5e-05 23.1 0.0 8.7e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Bromo_TP PF07524.8 gi|397780587|ref|YP_006545060.1| - 0.0021 17.7 0.0 0.0045 16.7 0.0 1.5 1 0 0 1 1 1 1 Bromodomain associated DUF2098 PF09871.4 gi|397780588|ref|YP_006545061.1| - 2.7e-23 81.6 1.4 3e-23 81.5 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) DUF2312 PF10073.4 gi|397780588|ref|YP_006545061.1| - 0.11 11.8 1.1 0.15 11.3 0.3 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) YcaO PF02624.11 gi|397780589|ref|YP_006545062.1| - 1.5e-83 281.0 0.4 1.9e-83 280.7 0.3 1.1 1 0 0 1 1 1 1 YcaO-like family Hist_deacetyl PF00850.14 gi|397780590|ref|YP_006545063.1| - 5.4e-77 259.1 0.0 6.8e-77 258.8 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain DUF2875 PF11394.3 gi|397780590|ref|YP_006545063.1| - 0.044 12.3 0.0 0.064 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2875) STT3 PF02516.9 gi|397780591|ref|YP_006545064.1| - 2.1e-24 86.3 35.5 6.5e-23 81.4 24.6 2.4 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Glyco_trans_1_4 PF13692.1 gi|397780592|ref|YP_006545065.1| - 4e-22 78.8 0.1 7.4e-22 77.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|397780592|ref|YP_006545065.1| - 5.5e-13 48.7 0.0 9.7e-13 47.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|397780592|ref|YP_006545065.1| - 6.4e-13 49.1 1.5 6.4e-13 49.1 1.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|397780592|ref|YP_006545065.1| - 1.1e-07 31.7 1.3 1.6e-07 31.2 0.9 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|397780592|ref|YP_006545065.1| - 3.9e-06 27.0 0.0 1.9e-05 24.8 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 DegT_DnrJ_EryC1 PF01041.12 gi|397780593|ref|YP_006545066.1| - 1.7e-10 40.4 0.0 1.8e-10 40.3 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Hexapep PF00132.19 gi|397780594|ref|YP_006545067.1| - 2.9e-30 102.4 18.6 3.9e-11 41.9 2.0 4.9 5 0 0 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|397780594|ref|YP_006545067.1| - 1.6e-19 69.1 18.4 2.9e-09 36.3 1.7 4.9 5 0 0 5 5 5 4 Hexapeptide repeat of succinyl-transferase SIS PF01380.17 gi|397780595|ref|YP_006545068.1| - 1.3e-49 167.1 1.1 7.9e-25 86.9 0.8 2.6 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|397780595|ref|YP_006545068.1| - 4.1e-25 88.2 0.1 8.5e-25 87.2 0.1 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|397780595|ref|YP_006545068.1| - 4.6e-22 78.0 0.0 8.3e-22 77.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|397780595|ref|YP_006545068.1| - 3.3e-21 75.4 0.9 6.7e-16 57.9 0.1 2.5 2 1 0 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|397780595|ref|YP_006545068.1| - 0.00037 19.2 0.2 0.00059 18.5 0.1 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II NTP_transferase PF00483.18 gi|397780596|ref|YP_006545069.1| - 6.1e-34 117.4 0.0 7.7e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|397780596|ref|YP_006545069.1| - 5.6e-19 68.7 0.0 7.6e-19 68.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|397780596|ref|YP_006545069.1| - 1.4e-18 65.5 18.5 2.3e-09 36.3 0.1 5.3 2 1 3 6 6 6 5 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|397780596|ref|YP_006545069.1| - 2.8e-07 30.3 0.4 6.8e-07 29.0 0.1 1.7 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|397780596|ref|YP_006545069.1| - 8.5e-07 28.4 14.8 9.6e-05 21.8 0.7 4.9 4 1 2 6 6 6 4 Hexapeptide repeat of succinyl-transferase Glycos_transf_2 PF00535.21 gi|397780596|ref|YP_006545069.1| - 0.044 13.4 0.3 0.079 12.6 0.2 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 CTP_transf_3 PF02348.14 gi|397780596|ref|YP_006545069.1| - 0.079 12.5 0.1 0.23 11.0 0.0 1.6 1 1 1 2 2 2 0 Cytidylyltransferase TPP_enzyme_N PF02776.13 gi|397780596|ref|YP_006545069.1| - 0.09 12.2 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NTP_transferase PF00483.18 gi|397780597|ref|YP_006545070.1| - 2.6e-38 131.7 0.0 3.4e-38 131.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|397780597|ref|YP_006545070.1| - 2.8e-20 70.8 30.5 8.3e-09 34.5 3.8 4.6 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|397780597|ref|YP_006545070.1| - 1.5e-15 57.6 0.0 1.9e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|397780597|ref|YP_006545070.1| - 4.3e-09 35.7 25.7 3.7e-06 26.3 2.4 4.6 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|397780597|ref|YP_006545070.1| - 0.0019 17.7 0.0 0.0031 17.0 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PGM_PMM_I PF02878.11 gi|397780598|ref|YP_006545071.1| - 4.9e-31 107.0 0.0 7.8e-31 106.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|397780598|ref|YP_006545071.1| - 3.7e-20 72.1 0.0 7.2e-20 71.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|397780598|ref|YP_006545071.1| - 9.9e-18 64.2 0.0 1.8e-17 63.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|397780598|ref|YP_006545071.1| - 2.3e-10 40.3 0.0 6.6e-10 38.8 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DEDD_Tnp_IS110 PF01548.12 gi|397780599|ref|YP_006545072.1| - 1.2e-31 109.3 0.0 1.9e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 Transposase Transposase_20 PF02371.11 gi|397780599|ref|YP_006545072.1| - 5.6e-24 84.0 0.0 1.3e-23 82.9 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family WI12 PF07107.6 gi|397780599|ref|YP_006545072.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Wound-induced protein WI12 MCM PF00493.18 gi|397780600|ref|YP_006545073.1| - 0.014 14.2 0.0 0.019 13.7 0.0 1.1 1 0 0 1 1 1 0 MCM2/3/5 family Cyclase PF04199.8 gi|590000670|ref|YP_006545074.2| - 1.2e-20 73.9 0.0 1.9e-20 73.2 0.0 1.4 1 1 0 1 1 1 1 Putative cyclase PCMT PF01135.14 gi|590000671|ref|YP_009001413.1| - 9.3e-69 231.1 0.0 1.1e-68 230.9 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|590000671|ref|YP_009001413.1| - 1.8e-09 38.1 0.0 2.9e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|590000671|ref|YP_009001413.1| - 6.7e-08 32.5 0.0 1e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|590000671|ref|YP_009001413.1| - 8.6e-08 31.5 0.0 1.1e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.1 gi|590000671|ref|YP_009001413.1| - 9.5e-07 28.5 0.0 1.2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|590000671|ref|YP_009001413.1| - 1.1e-05 24.9 0.0 1.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|590000671|ref|YP_009001413.1| - 2.6e-05 24.6 0.0 4.7e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|590000671|ref|YP_009001413.1| - 0.0069 16.1 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|590000671|ref|YP_009001413.1| - 0.02 14.3 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit DUF938 PF06080.7 gi|590000671|ref|YP_009001413.1| - 0.025 14.1 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_25 PF13649.1 gi|590000671|ref|YP_009001413.1| - 0.032 14.5 0.0 0.048 14.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|590000671|ref|YP_009001413.1| - 0.05 12.6 0.0 0.061 12.4 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase ACP_syn_III_C PF08541.5 gi|590000671|ref|YP_009001413.1| - 0.052 13.5 0.0 0.16 11.9 0.0 1.8 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal UPF0051 PF01458.12 gi|397780602|ref|YP_006545075.1| - 2.2e-51 174.5 0.2 2.8e-51 174.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|397780603|ref|YP_006545076.1| - 2.6e-22 79.5 0.0 3.7e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780603|ref|YP_006545076.1| - 1.1e-09 38.7 0.3 2.5e-06 27.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|397780603|ref|YP_006545076.1| - 8.4e-06 25.2 0.0 1.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|397780603|ref|YP_006545076.1| - 9.5e-05 21.7 0.4 0.0018 17.5 0.2 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|397780603|ref|YP_006545076.1| - 0.00021 20.4 0.1 0.00034 19.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|397780603|ref|YP_006545076.1| - 0.00027 21.3 0.1 0.00046 20.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|397780603|ref|YP_006545076.1| - 0.011 15.5 0.1 0.018 14.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|397780603|ref|YP_006545076.1| - 0.013 14.9 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_15 PF13175.1 gi|397780603|ref|YP_006545076.1| - 0.013 14.5 0.1 0.024 13.7 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|397780603|ref|YP_006545076.1| - 0.016 14.5 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|397780603|ref|YP_006545076.1| - 0.03 13.9 0.1 0.05 13.2 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|397780603|ref|YP_006545076.1| - 0.032 14.2 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Adeno_IVa2 PF02456.10 gi|397780603|ref|YP_006545076.1| - 0.051 12.2 0.0 0.071 11.7 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_17 PF13207.1 gi|397780603|ref|YP_006545076.1| - 0.068 14.0 0.2 0.2 12.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|397780603|ref|YP_006545076.1| - 0.076 13.2 0.2 0.25 11.5 0.1 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|397780603|ref|YP_006545076.1| - 0.09 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase DAP3 PF10236.4 gi|397780603|ref|YP_006545076.1| - 0.096 11.5 0.1 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 T2SE PF00437.15 gi|397780603|ref|YP_006545076.1| - 0.099 11.5 0.0 0.21 10.4 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_10 PF12846.2 gi|397780603|ref|YP_006545076.1| - 0.1 12.0 0.9 0.16 11.3 0.6 1.2 1 0 0 1 1 1 0 AAA-like domain cobW PF02492.14 gi|397780603|ref|YP_006545076.1| - 0.11 11.9 0.4 0.18 11.2 0.3 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATP-synt_ab PF00006.20 gi|397780603|ref|YP_006545076.1| - 0.13 11.7 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|397780603|ref|YP_006545076.1| - 0.26 11.4 1.4 0.52 10.4 0.2 1.9 2 0 0 2 2 2 0 AAA domain IL13 PF03487.8 gi|397780605|ref|YP_006545078.1| - 0.62 9.8 4.8 1.4 8.7 3.4 1.5 1 0 0 1 1 1 0 Interleukin-13 ATC_hydrolase PF14196.1 gi|397780606|ref|YP_006545079.1| - 0.0006 20.2 0.0 0.00074 19.9 0.0 1.1 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase Peptidase_M54 PF07998.6 gi|397780607|ref|YP_006545080.1| - 9.7e-29 100.5 0.0 1.2e-28 100.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|397780607|ref|YP_006545080.1| - 0.0005 19.8 0.0 0.001 18.8 0.0 1.3 1 1 0 1 1 1 1 Matrixin Metallopep PF12044.3 gi|397780607|ref|YP_006545080.1| - 0.0021 16.6 0.9 0.0029 16.1 0.6 1.1 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_2 PF13574.1 gi|397780607|ref|YP_006545080.1| - 0.0021 18.1 0.0 0.0023 18.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|397780607|ref|YP_006545080.1| - 0.012 16.1 0.0 0.019 15.4 0.0 1.4 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|397780607|ref|YP_006545080.1| - 0.015 15.2 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M66 PF10462.4 gi|397780607|ref|YP_006545080.1| - 0.015 14.1 0.0 0.022 13.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 NTPase_1 PF03266.10 gi|397780608|ref|YP_006545081.1| - 2.4e-45 154.2 0.0 2.7e-45 154.0 0.0 1.0 1 0 0 1 1 1 1 NTPase AAA_17 PF13207.1 gi|397780608|ref|YP_006545081.1| - 9.6e-07 29.6 0.0 1.2e-06 29.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|397780608|ref|YP_006545081.1| - 6.5e-06 26.2 0.1 2.4e-05 24.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|397780608|ref|YP_006545081.1| - 7e-06 26.3 0.0 8.7e-06 26.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|397780608|ref|YP_006545081.1| - 1.3e-05 25.3 0.0 0.00011 22.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|397780608|ref|YP_006545081.1| - 1.8e-05 24.3 0.1 4.9e-05 23.0 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain MMR_HSR1 PF01926.18 gi|397780608|ref|YP_006545081.1| - 3.6e-05 23.6 0.0 4.7e-05 23.3 0.0 1.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_28 PF13521.1 gi|397780608|ref|YP_006545081.1| - 0.00034 20.6 0.0 0.00061 19.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|397780608|ref|YP_006545081.1| - 0.00039 20.0 0.0 0.0039 16.7 0.0 2.0 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_5 PF07728.9 gi|397780608|ref|YP_006545081.1| - 0.00043 20.0 0.1 0.0016 18.1 0.0 1.9 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) cobW PF02492.14 gi|397780608|ref|YP_006545081.1| - 0.00084 18.8 0.0 0.0023 17.4 0.0 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|397780608|ref|YP_006545081.1| - 0.00093 18.8 0.0 0.0022 17.6 0.0 1.6 2 0 0 2 2 2 1 NACHT domain AAA PF00004.24 gi|397780608|ref|YP_006545081.1| - 0.0011 19.1 0.0 0.0026 17.9 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|397780608|ref|YP_006545081.1| - 0.0013 18.4 0.0 0.0069 16.0 0.0 2.2 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|397780608|ref|YP_006545081.1| - 0.0014 18.4 0.1 0.0076 16.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|397780608|ref|YP_006545081.1| - 0.0015 18.4 0.0 0.11 12.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|397780608|ref|YP_006545081.1| - 0.002 17.6 0.0 0.0035 16.8 0.0 1.4 2 0 0 2 2 1 1 AAA-like domain Arch_ATPase PF01637.13 gi|397780608|ref|YP_006545081.1| - 0.0021 17.8 0.0 0.004 16.8 0.0 1.5 2 0 0 2 2 1 1 Archaeal ATPase FtsK_SpoIIIE PF01580.13 gi|397780608|ref|YP_006545081.1| - 0.0033 16.9 0.0 0.0052 16.2 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|397780608|ref|YP_006545081.1| - 0.0047 16.1 0.0 0.0095 15.1 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|397780608|ref|YP_006545081.1| - 0.0048 16.3 0.1 0.017 14.5 0.0 1.9 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.7 gi|397780608|ref|YP_006545081.1| - 0.0058 15.7 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|397780608|ref|YP_006545081.1| - 0.0066 15.9 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ArgK PF03308.11 gi|397780608|ref|YP_006545081.1| - 0.013 14.3 0.1 0.046 12.4 0.0 1.8 1 1 0 2 2 2 0 ArgK protein AAA_30 PF13604.1 gi|397780608|ref|YP_006545081.1| - 0.015 14.9 0.0 0.18 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|397780608|ref|YP_006545081.1| - 0.017 14.3 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ABC_tran PF00005.22 gi|397780608|ref|YP_006545081.1| - 0.018 15.3 0.0 0.031 14.5 0.0 1.4 1 0 0 1 1 1 0 ABC transporter T2SE PF00437.15 gi|397780608|ref|YP_006545081.1| - 0.028 13.3 0.0 0.04 12.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Miro PF08477.8 gi|397780608|ref|YP_006545081.1| - 0.036 14.5 0.0 0.048 14.1 0.0 1.2 1 0 0 1 1 1 0 Miro-like protein RNA_helicase PF00910.17 gi|397780608|ref|YP_006545081.1| - 0.041 14.0 0.0 0.069 13.3 0.0 1.4 1 0 0 1 1 1 0 RNA helicase KaiC PF06745.8 gi|397780608|ref|YP_006545081.1| - 0.041 12.9 0.0 0.24 10.4 0.0 1.9 2 0 0 2 2 2 0 KaiC IstB_IS21 PF01695.12 gi|397780608|ref|YP_006545081.1| - 0.043 13.2 0.0 0.52 9.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ATP_bind_1 PF03029.12 gi|397780608|ref|YP_006545081.1| - 0.049 13.1 0.0 0.085 12.3 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF815 PF05673.8 gi|397780608|ref|YP_006545081.1| - 0.054 12.4 0.1 0.33 9.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|397780608|ref|YP_006545081.1| - 0.078 11.9 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) GvpD PF07088.6 gi|397780608|ref|YP_006545081.1| - 0.082 11.2 0.0 0.11 10.8 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_24 PF13479.1 gi|397780608|ref|YP_006545081.1| - 0.091 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|397780608|ref|YP_006545081.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_11 PF13086.1 gi|397780608|ref|YP_006545081.1| - 0.15 11.6 0.0 1.3 8.5 0.0 2.0 1 1 0 2 2 2 0 AAA domain DnaB_C PF03796.10 gi|397780608|ref|YP_006545081.1| - 0.17 10.6 0.0 0.26 10.1 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain TrwB_AAD_bind PF10412.4 gi|397780608|ref|YP_006545081.1| - 0.18 10.4 0.0 0.28 9.7 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain HTH_3 PF01381.17 gi|397780609|ref|YP_006545082.1| - 7.4e-15 54.5 0.2 8.6e-15 54.3 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|397780609|ref|YP_006545082.1| - 2.4e-10 40.2 0.0 2.9e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|397780609|ref|YP_006545082.1| - 3.9e-10 39.7 0.0 5.4e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|397780609|ref|YP_006545082.1| - 1.2e-05 25.4 0.0 1.4e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|397780609|ref|YP_006545082.1| - 0.00029 20.4 0.1 0.00039 20.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|397780609|ref|YP_006545082.1| - 0.0096 15.7 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|397780609|ref|YP_006545082.1| - 0.01 15.6 0.0 0.02 14.6 0.0 1.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|397780609|ref|YP_006545082.1| - 0.026 14.1 0.2 0.044 13.4 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|397780609|ref|YP_006545082.1| - 0.027 13.7 0.5 0.054 12.8 0.3 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|397780609|ref|YP_006545082.1| - 0.039 13.5 0.2 0.061 12.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MtrG PF04210.8 gi|397780609|ref|YP_006545082.1| - 0.079 12.6 0.1 0.22 11.2 0.1 1.7 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G MerR PF00376.18 gi|397780609|ref|YP_006545082.1| - 0.093 12.3 0.2 0.39 10.3 0.0 2.2 2 1 0 2 2 2 0 MerR family regulatory protein DUF4010 PF13194.1 gi|397780610|ref|YP_006545083.1| - 0.0092 15.3 1.6 0.012 14.9 1.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4010) DUF3796 PF12676.2 gi|397780610|ref|YP_006545083.1| - 0.044 13.9 0.0 0.058 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3796) SdpI PF13630.1 gi|397780610|ref|YP_006545083.1| - 1.4 8.7 7.4 5 6.8 2.6 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF4131 PF13567.1 gi|397780610|ref|YP_006545083.1| - 3.6 6.9 6.6 17 4.7 4.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Tr-sialidase_C PF11052.3 gi|397780610|ref|YP_006545083.1| - 5.8 6.8 9.6 16 5.4 0.5 2.6 2 0 0 2 2 2 0 Trans-sialidase of Trypanosoma hydrophobic C-terminal EcsB PF05975.7 gi|397780611|ref|YP_006545084.1| - 0.01 14.3 7.6 0.014 13.8 5.3 1.2 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB UbiA PF01040.13 gi|397780611|ref|YP_006545084.1| - 0.19 10.9 12.6 0.21 10.7 8.8 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF4199 PF13858.1 gi|397780611|ref|YP_006545084.1| - 0.25 11.2 0.2 0.25 11.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) TMEM190 PF15431.1 gi|397780611|ref|YP_006545084.1| - 0.51 10.2 4.2 0.22 11.4 0.4 2.1 1 1 2 3 3 3 0 Transmembrane protein 190 FA_desaturase PF00487.19 gi|397780611|ref|YP_006545084.1| - 1.8 7.9 8.2 1.8 7.9 5.2 1.3 1 1 0 1 1 1 0 Fatty acid desaturase Glyco_transf_20 PF00982.16 gi|397780612|ref|YP_006545085.1| - 7.4e-167 555.5 0.0 1e-166 555.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.11 gi|397780612|ref|YP_006545085.1| - 9.3e-56 188.3 0.0 1.4e-55 187.7 0.0 1.2 1 0 0 1 1 1 1 Trehalose-phosphatase Glycos_transf_1 PF00534.15 gi|397780612|ref|YP_006545085.1| - 1.3e-07 31.1 0.3 4.4e-06 26.2 0.4 2.6 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397780612|ref|YP_006545085.1| - 0.00011 22.3 0.2 0.00057 20.0 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Hydrolase_3 PF08282.7 gi|397780612|ref|YP_006545085.1| - 0.00012 21.7 0.0 0.24 10.9 0.0 2.7 2 1 0 3 3 3 2 haloacid dehalogenase-like hydrolase Glyco_transf_5 PF08323.6 gi|397780612|ref|YP_006545085.1| - 0.00049 19.6 0.2 0.00085 18.8 0.1 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain tRNA-synt_2d PF01409.15 gi|397780613|ref|YP_006545086.1| - 5e-54 183.0 0.0 2.4e-50 171.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|397780613|ref|YP_006545086.1| - 3e-06 26.9 0.0 5.6e-06 26.0 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|397780613|ref|YP_006545086.1| - 0.043 12.5 0.1 0.62 8.7 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) Wyosine_form PF08608.7 gi|590000672|ref|YP_006545087.2| - 3.3e-20 71.9 0.0 6.6e-20 70.9 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|590000672|ref|YP_006545087.2| - 3.9e-17 62.9 0.0 6.2e-17 62.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HAD_2 PF13419.1 gi|590000672|ref|YP_006545087.2| - 0.067 13.4 0.0 0.21 11.7 0.0 1.8 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase tRNA-synt_1d PF00750.14 gi|590000673|ref|YP_009001414.1| - 4.4e-53 180.3 0.0 6.1e-53 179.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|590000673|ref|YP_009001414.1| - 7.8e-31 106.5 0.7 2e-30 105.1 0.5 1.8 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|590000673|ref|YP_009001414.1| - 1.7e-11 44.4 0.0 9.9e-11 42.0 0.0 2.3 3 0 0 3 3 3 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|590000673|ref|YP_009001414.1| - 1.9e-07 30.1 0.0 0.015 13.9 0.0 2.9 2 1 1 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|590000673|ref|YP_009001414.1| - 0.0015 17.3 0.0 0.083 11.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|590000673|ref|YP_009001414.1| - 0.19 9.6 0.0 0.33 8.9 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) eRF1_2 PF03464.10 gi|397780615|ref|YP_006545088.1| - 1.9e-32 112.4 0.0 3e-32 111.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|397780615|ref|YP_006545088.1| - 1.6e-30 105.6 0.0 4.2e-30 104.3 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|397780615|ref|YP_006545088.1| - 8.7e-25 86.8 0.0 6e-24 84.0 0.0 2.1 2 0 0 2 2 2 1 eRF1 domain 1 NUDIX PF00293.23 gi|590000674|ref|YP_006545089.2| - 3.1e-15 56.0 0.0 4.2e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain QueC PF06508.8 gi|397780617|ref|YP_006545090.1| - 5.9e-71 238.0 0.0 6.6e-71 237.9 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|397780617|ref|YP_006545090.1| - 2.7e-07 30.2 0.0 1.2e-06 28.1 0.0 1.8 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|397780617|ref|YP_006545090.1| - 2.4e-05 23.9 0.0 3.1e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|397780617|ref|YP_006545090.1| - 4.4e-05 22.1 0.0 6.1e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|397780617|ref|YP_006545090.1| - 0.00026 20.5 0.0 0.0021 17.5 0.0 2.0 2 0 0 2 2 2 1 PP-loop family AP_endonuc_2 PF01261.19 gi|397780617|ref|YP_006545090.1| - 0.0029 16.9 0.0 0.0041 16.4 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel NAD_synthase PF02540.12 gi|397780617|ref|YP_006545090.1| - 0.018 13.9 0.0 0.033 13.0 0.0 1.5 2 0 0 2 2 2 0 NAD synthase Arginosuc_synth PF00764.14 gi|397780617|ref|YP_006545090.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase Fer4_14 PF13394.1 gi|590000675|ref|YP_006545091.2| - 1.1e-19 70.6 0.1 1.5e-19 70.1 0.1 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|590000675|ref|YP_006545091.2| - 4.1e-19 69.3 0.1 5.5e-19 68.9 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|590000675|ref|YP_006545091.2| - 1.9e-10 40.9 0.2 2.7e-10 40.5 0.1 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain SEO_C PF14577.1 gi|590000675|ref|YP_006545091.2| - 0.12 11.7 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Sieve element occlusion C-terminus PTPS PF01242.14 gi|397780619|ref|YP_006545092.1| - 1.7e-32 111.6 0.0 2.1e-32 111.3 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Ribosom_S12_S23 PF00164.20 gi|397780620|ref|YP_006545093.1| - 1.1e-37 128.1 0.3 1.3e-37 127.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|397780621|ref|YP_006545094.1| - 1.4e-42 144.7 2.8 1.7e-42 144.5 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF1817 PF08847.6 gi|397780621|ref|YP_006545094.1| - 0.046 13.2 0.0 0.07 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1817) DUF2262 PF10020.4 gi|397780621|ref|YP_006545094.1| - 0.1 12.7 0.2 0.17 12.1 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2262) GTP_EFTU PF00009.22 gi|397780622|ref|YP_006545095.1| - 4.7e-60 202.2 0.1 7.4e-60 201.6 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|397780622|ref|YP_006545095.1| - 6.4e-29 99.9 0.3 3.5e-28 97.5 0.0 2.4 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|397780622|ref|YP_006545095.1| - 9.8e-26 89.4 0.3 3e-25 87.8 0.2 1.9 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|397780622|ref|YP_006545095.1| - 1.5e-23 82.4 0.1 6e-23 80.5 0.0 2.1 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|397780622|ref|YP_006545095.1| - 6.2e-15 55.0 3.3 7.3e-15 54.8 0.4 2.7 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|397780622|ref|YP_006545095.1| - 0.00028 20.7 0.0 0.00062 19.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Lactamase_B PF00753.22 gi|397780623|ref|YP_006545096.1| - 6.4e-24 84.6 4.7 8.1e-24 84.3 3.2 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|397780623|ref|YP_006545096.1| - 0.00037 20.1 0.0 0.00043 19.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|397780623|ref|YP_006545096.1| - 0.018 14.7 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain PEPcase_2 PF14010.1 gi|397780624|ref|YP_006545097.1| - 2.1e-186 620.0 0.0 2.4e-186 619.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.12 gi|397780624|ref|YP_006545097.1| - 0.11 10.3 0.0 0.16 9.7 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase DUF1917 PF08939.5 gi|397780625|ref|YP_006545098.1| - 3.2e-44 151.5 0.0 2.6e-43 148.5 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF1917) DUF1488 PF07369.6 gi|397780625|ref|YP_006545098.1| - 0.092 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1488) Thi4 PF01946.12 gi|397780626|ref|YP_006545099.1| - 6e-85 283.9 0.5 6.9e-85 283.7 0.3 1.0 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|397780626|ref|YP_006545099.1| - 3.5e-08 33.3 0.5 1.1e-07 31.8 0.3 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|397780626|ref|YP_006545099.1| - 4e-08 32.5 7.0 0.00011 21.2 1.6 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|397780626|ref|YP_006545099.1| - 6.1e-07 28.8 1.7 8.9e-07 28.3 1.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|397780626|ref|YP_006545099.1| - 2e-06 27.1 0.2 3e-06 26.5 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|397780626|ref|YP_006545099.1| - 8e-05 21.2 3.0 0.00028 19.4 2.3 1.7 1 1 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|397780626|ref|YP_006545099.1| - 0.00011 21.2 7.9 0.00052 18.9 4.3 2.6 1 1 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|397780626|ref|YP_006545099.1| - 0.00035 20.6 0.1 0.00051 20.1 0.1 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|397780626|ref|YP_006545099.1| - 0.00076 19.4 0.2 0.001 18.9 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|397780626|ref|YP_006545099.1| - 0.027 14.8 2.0 0.054 13.9 0.6 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|397780626|ref|YP_006545099.1| - 0.047 12.5 1.6 0.067 12.0 1.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A K_oxygenase PF13434.1 gi|397780626|ref|YP_006545099.1| - 0.13 11.1 0.0 0.19 10.6 0.0 1.1 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|397780626|ref|YP_006545099.1| - 0.21 10.4 2.3 0.15 10.9 0.6 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein Peptidase_M48 PF01435.13 gi|397780627|ref|YP_006545100.1| - 6.6e-41 140.3 0.4 1e-40 139.6 0.1 1.5 1 1 1 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|397780627|ref|YP_006545100.1| - 4.1e-07 29.2 0.2 1.9e-06 27.0 0.0 2.0 2 0 0 2 2 2 1 BlaR1 peptidase M56 DUF2569 PF10754.4 gi|397780627|ref|YP_006545100.1| - 0.0054 16.9 1.1 0.0054 16.9 0.7 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF2569) DUF2207 PF09972.4 gi|397780627|ref|YP_006545100.1| - 0.025 13.1 8.5 0.21 10.1 0.6 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) TM_helix PF05552.7 gi|397780627|ref|YP_006545100.1| - 0.036 13.7 2.3 0.09 12.4 1.6 1.7 1 0 0 1 1 1 0 Conserved TM helix Peptidase_U49 PF10463.4 gi|397780627|ref|YP_006545100.1| - 0.045 13.5 0.0 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 Peptidase U49 Peptidase_MA_2 PF13485.1 gi|397780627|ref|YP_006545100.1| - 0.14 12.1 0.0 0.33 11.0 0.0 1.6 1 0 0 1 1 1 0 Peptidase MA superfamily Pex24p PF06398.6 gi|397780627|ref|YP_006545100.1| - 0.37 9.5 1.9 0.62 8.8 1.3 1.4 1 1 0 1 1 1 0 Integral peroxisomal membrane peroxin MgtE PF01769.11 gi|397780627|ref|YP_006545100.1| - 2.6 8.3 12.2 0.1 12.8 1.4 2.2 2 0 0 2 2 2 0 Divalent cation transporter Abhydrolase_6 PF12697.2 gi|397780628|ref|YP_006545101.1| - 5e-28 98.5 0.6 5.8e-28 98.3 0.4 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|397780628|ref|YP_006545101.1| - 4.9e-17 62.2 0.0 1.5e-15 57.4 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|397780628|ref|YP_006545101.1| - 3.3e-10 39.9 0.0 7.2e-10 38.7 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|397780628|ref|YP_006545101.1| - 0.025 14.8 0.1 0.042 14.0 0.0 1.5 1 0 0 1 1 1 0 Thioesterase domain Ndr PF03096.9 gi|397780628|ref|YP_006545101.1| - 0.073 11.5 0.0 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 Ndr family PAC2 PF09754.4 gi|397780631|ref|YP_006545104.1| - 2.1e-53 181.4 0.1 2.6e-53 181.1 0.1 1.0 1 0 0 1 1 1 1 PAC2 family NAD_binding_10 PF13460.1 gi|397780631|ref|YP_006545104.1| - 0.026 14.5 0.0 3.4 7.6 0.0 2.4 3 0 0 3 3 3 0 NADH(P)-binding EIF_2_alpha PF07541.7 gi|397780632|ref|YP_006545105.1| - 1.9e-25 88.7 0.0 3.3e-25 88.0 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|397780632|ref|YP_006545105.1| - 5.4e-12 45.6 0.0 9.8e-12 44.7 0.0 1.4 1 0 0 1 1 1 1 S1 RNA binding domain Ribosomal_S27e PF01667.12 gi|397780633|ref|YP_006545106.1| - 1.4e-25 88.5 0.2 1.5e-25 88.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|397780633|ref|YP_006545106.1| - 0.00042 19.5 0.9 0.00054 19.2 0.7 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Mu-like_Com PF10122.4 gi|397780633|ref|YP_006545106.1| - 0.005 15.8 0.5 1.6 7.8 0.0 2.2 2 0 0 2 2 2 2 Mu-like prophage protein Com IBR PF01485.16 gi|397780633|ref|YP_006545106.1| - 0.012 15.4 0.3 0.013 15.3 0.2 1.1 1 0 0 1 1 1 0 IBR domain OrfB_Zn_ribbon PF07282.6 gi|397780633|ref|YP_006545106.1| - 0.023 14.3 0.7 0.035 13.7 0.4 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|397780633|ref|YP_006545106.1| - 0.029 14.0 0.3 0.039 13.6 0.2 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RNA_POL_M_15KD PF02150.11 gi|397780633|ref|YP_006545106.1| - 0.03 14.0 0.5 0.051 13.2 0.4 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Sgf11 PF08209.6 gi|397780633|ref|YP_006545106.1| - 0.038 13.2 2.0 0.52 9.6 0.0 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|397780633|ref|YP_006545106.1| - 0.045 13.7 1.5 0.068 13.1 1.0 1.3 1 0 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|397780633|ref|YP_006545106.1| - 0.047 13.5 0.3 0.06 13.1 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|397780633|ref|YP_006545106.1| - 0.057 12.9 0.1 0.059 12.8 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Lar_restr_allev PF14354.1 gi|397780633|ref|YP_006545106.1| - 0.058 13.7 1.0 0.26 11.6 0.7 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar HypA PF01155.14 gi|397780633|ref|YP_006545106.1| - 0.062 12.9 0.3 0.07 12.8 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-CHY PF05495.7 gi|397780633|ref|YP_006545106.1| - 0.063 13.4 0.5 0.083 13.0 0.4 1.1 1 0 0 1 1 1 0 CHY zinc finger DUF2387 PF09526.5 gi|397780633|ref|YP_006545106.1| - 0.092 12.6 0.6 0.13 12.1 0.4 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) PADR1 PF08063.7 gi|397780633|ref|YP_006545106.1| - 0.12 11.8 1.4 0.28 10.5 1.0 1.6 1 1 1 2 2 2 0 PADR1 (NUC008) domain Zn_Tnp_IS1 PF03811.8 gi|397780633|ref|YP_006545106.1| - 0.14 11.6 0.4 0.14 11.6 0.3 1.9 1 1 1 2 2 2 0 InsA N-terminal domain zf-AN1 PF01428.11 gi|397780633|ref|YP_006545106.1| - 0.19 11.5 1.0 4.5 7.2 0.1 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zf-C4_Topoisom PF01396.14 gi|397780633|ref|YP_006545106.1| - 0.2 11.1 1.9 2.1 7.9 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_4 PF13717.1 gi|397780633|ref|YP_006545106.1| - 0.24 11.1 3.8 2.8 7.6 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|397780633|ref|YP_006545106.1| - 0.24 11.0 3.2 6.5 6.4 2.2 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|397780633|ref|YP_006545106.1| - 0.29 10.4 3.0 3.2 7.0 2.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.2 gi|397780633|ref|YP_006545106.1| - 0.35 10.5 4.6 0.5 10.0 1.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_2 PF13240.1 gi|397780633|ref|YP_006545106.1| - 0.38 10.2 2.0 1.3 8.5 1.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|397780633|ref|YP_006545106.1| - 0.38 10.3 4.4 2.1 8.0 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DUF164 PF02591.10 gi|397780633|ref|YP_006545106.1| - 0.41 10.5 3.4 0.53 10.1 0.1 2.1 1 1 1 2 2 2 0 Putative zinc ribbon domain Ribosomal_L44 PF00935.14 gi|397780634|ref|YP_006545107.1| - 3.3e-28 97.4 2.7 4.1e-28 97.2 1.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 DUF2296 PF10058.4 gi|397780634|ref|YP_006545107.1| - 0.054 13.2 1.8 6.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Elf1 PF05129.8 gi|397780634|ref|YP_006545107.1| - 0.098 12.3 2.2 4.5 7.0 0.0 2.3 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like Zn_Tnp_IS1 PF03811.8 gi|397780634|ref|YP_006545107.1| - 0.1 12.0 3.4 2.2 7.8 0.3 2.3 2 0 0 2 2 2 0 InsA N-terminal domain Zn-ribbon_8 PF09723.5 gi|397780634|ref|YP_006545107.1| - 0.12 12.3 1.3 13 5.8 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Ribosomal_L33 PF00471.15 gi|397780634|ref|YP_006545107.1| - 0.16 12.2 0.9 0.16 12.2 0.6 2.2 2 0 0 2 2 2 0 Ribosomal protein L33 zf-H2C2_2 PF13465.1 gi|397780634|ref|YP_006545107.1| - 0.64 10.4 3.5 6.8 7.1 0.1 2.5 2 0 0 2 2 2 0 Zinc-finger double domain Ribosomal_S14 PF00253.16 gi|397780634|ref|YP_006545107.1| - 3.8 6.9 6.0 0.95 8.8 0.1 2.5 2 1 0 2 2 2 0 Ribosomal protein S14p/S29e DNA_primase_S PF01896.14 gi|397780636|ref|YP_006545109.1| - 9.6e-18 64.3 0.0 2e-17 63.3 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Radical_SAM PF04055.16 gi|397780637|ref|YP_006545110.1| - 1.2e-18 67.8 0.0 2.8e-18 66.6 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|397780637|ref|YP_006545110.1| - 3e-09 36.7 0.4 1e-08 35.1 0.1 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|397780637|ref|YP_006545110.1| - 0.021 14.9 0.3 0.083 13.0 0.2 2.1 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain UPF0058 PF01893.11 gi|397780638|ref|YP_006545111.1| - 2.3e-21 75.6 3.8 2.6e-21 75.4 2.7 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 ADP_ribosyl_GH PF03747.9 gi|397780639|ref|YP_006545112.1| - 2.5e-54 185.0 2.1 3.6e-54 184.5 1.5 1.2 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Transgly_assoc PF04226.8 gi|397780639|ref|YP_006545112.1| - 1.5 8.9 6.6 5.9 7.0 0.1 2.5 2 0 0 2 2 2 0 Transglycosylase associated protein UPF0179 PF03684.8 gi|397780640|ref|YP_006545113.1| - 6.4e-50 168.4 2.9 7.1e-50 168.3 2.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DUF116 PF01976.12 gi|397780640|ref|YP_006545113.1| - 0.015 14.7 1.3 0.02 14.4 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF116 Fe-ADH_2 PF13685.1 gi|397780641|ref|YP_006545114.1| - 2.7e-65 220.1 1.1 3.3e-65 219.8 0.8 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|397780641|ref|YP_006545114.1| - 3.2e-22 78.6 7.7 1e-21 76.9 5.3 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|397780641|ref|YP_006545114.1| - 1.9e-08 33.5 0.2 1.5e-07 30.6 0.1 2.0 1 1 0 1 1 1 1 3-dehydroquinate synthase Gly-zipper_OmpA PF13436.1 gi|397780641|ref|YP_006545114.1| - 0.19 11.4 2.0 0.35 10.5 1.4 1.4 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain DUF63 PF01889.12 gi|397780642|ref|YP_006545115.1| - 5.1e-94 315.3 21.7 5.7e-94 315.2 15.0 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Peptidase_A8 PF01252.13 gi|397780642|ref|YP_006545115.1| - 5.8 6.5 10.8 1.2 8.7 0.5 3.0 1 1 1 3 3 3 0 Signal peptidase (SPase) II DUF95 PF01944.12 gi|397780643|ref|YP_006545116.1| - 8.2e-35 119.9 14.5 9.4e-35 119.7 10.0 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 tRNA-synt_2b PF00587.20 gi|397780644|ref|YP_006545117.1| - 4.8e-18 65.3 0.1 8.5e-18 64.5 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|397780644|ref|YP_006545117.1| - 8.2e-17 60.9 0.1 1.8e-16 59.8 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|397780644|ref|YP_006545117.1| - 1.1e-08 34.8 0.1 2.6e-08 33.6 0.0 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal TIR_2 PF13676.1 gi|397780644|ref|YP_006545117.1| - 0.032 14.3 0.2 0.27 11.3 0.0 2.4 2 0 0 2 2 2 0 TIR domain UPF0547 PF10571.4 gi|397780645|ref|YP_006545118.1| - 0.0003 20.3 0.6 0.0003 20.3 0.4 3.5 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|397780645|ref|YP_006545118.1| - 0.0044 16.8 11.8 0.042 13.6 1.3 3.7 2 2 0 2 2 2 1 Double zinc ribbon C1_1 PF00130.17 gi|397780645|ref|YP_006545118.1| - 0.015 15.0 4.9 0.21 11.3 0.2 2.6 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rad50_zn_hook PF04423.9 gi|397780645|ref|YP_006545118.1| - 0.022 14.2 0.4 0.022 14.2 0.3 3.1 5 0 0 5 5 4 0 Rad50 zinc hook motif DUF2116 PF09889.4 gi|397780645|ref|YP_006545118.1| - 0.11 12.3 4.3 0.17 11.7 0.0 2.7 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zinc_ribbon_2 PF13240.1 gi|397780645|ref|YP_006545118.1| - 0.12 11.9 14.9 0.15 11.5 0.2 4.0 4 0 0 4 4 4 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|397780645|ref|YP_006545118.1| - 0.12 12.0 6.1 0.47 10.1 0.5 2.6 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_4 PF13717.1 gi|397780645|ref|YP_006545118.1| - 0.24 11.1 10.2 3.5 7.4 0.4 4.0 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|397780645|ref|YP_006545118.1| - 0.32 10.6 10.8 3.3 7.3 0.4 4.0 4 0 0 4 4 4 0 zinc-ribbon domain DUF35_N PF12172.3 gi|397780645|ref|YP_006545118.1| - 0.42 10.5 15.3 3.9 7.4 0.1 4.2 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RING_3 PF14369.1 gi|397780645|ref|YP_006545118.1| - 0.51 10.3 0.2 0.51 10.3 0.1 4.0 5 0 0 5 5 4 0 zinc-finger zf-ribbon_3 PF13248.1 gi|397780645|ref|YP_006545118.1| - 0.91 8.8 19.5 4.3 6.6 0.0 4.5 5 0 0 5 5 4 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|397780645|ref|YP_006545118.1| - 1.4 8.9 13.6 1.9 8.4 0.1 4.5 5 0 0 5 5 5 0 Zinc ribbon domain zf-AN1 PF01428.11 gi|397780645|ref|YP_006545118.1| - 2.3 8.1 7.1 15 5.5 0.5 3.2 3 0 0 3 3 3 0 AN1-like Zinc finger YhfH PF14149.1 gi|397780645|ref|YP_006545118.1| - 2.4 8.0 0.0 2.4 8.0 0.0 3.3 3 1 1 4 4 3 0 YhfH-like protein Prok-RING_1 PF14446.1 gi|397780645|ref|YP_006545118.1| - 3.5 7.4 10.1 3.2 7.5 0.1 3.5 3 1 1 4 4 4 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|397780645|ref|YP_006545118.1| - 4.8 7.0 9.1 0.63 9.8 0.9 3.1 3 2 0 3 3 3 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|397780645|ref|YP_006545118.1| - 5 6.8 8.8 9 6.0 0.7 2.9 2 2 0 2 2 2 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.7 gi|397780645|ref|YP_006545118.1| - 6.9 6.5 12.4 7.5 6.4 0.0 4.0 4 0 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.7 gi|397780645|ref|YP_006545118.1| - 8.2 5.8 15.2 0.97 8.8 2.9 3.4 3 1 0 3 3 3 0 TFIIB zinc-binding zf-H2C2_2 PF13465.1 gi|397780645|ref|YP_006545118.1| - 8.3 6.9 15.8 54 4.3 0.1 4.3 4 0 0 4 4 4 0 Zinc-finger double domain DUF1805 PF08827.6 gi|397780646|ref|YP_006545119.1| - 6.3e-10 38.7 0.2 1.1e-09 37.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) Radical_SAM PF04055.16 gi|397780647|ref|YP_006545120.1| - 5.9e-11 42.8 0.6 1.1e-10 41.9 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Toxin_28 PF08115.6 gi|397780647|ref|YP_006545120.1| - 0.0038 16.8 0.4 0.0087 15.6 0.2 1.6 1 0 0 1 1 1 1 SFI toxin family DUF1328 PF07043.8 gi|397780648|ref|YP_006545121.1| - 3.5e-11 42.8 18.7 5.4e-11 42.2 13.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF3671 PF12420.3 gi|397780648|ref|YP_006545121.1| - 2 8.4 5.4 2.2 8.2 3.8 1.0 1 0 0 1 1 1 0 Protein of unknown function SecG PF03840.9 gi|397780648|ref|YP_006545121.1| - 6.7 6.5 14.2 6.7 6.5 2.6 2.1 1 1 1 2 2 2 0 Preprotein translocase SecG subunit FMN_red PF03358.10 gi|397780649|ref|YP_006545122.1| - 2.9e-18 65.8 0.0 4.3e-18 65.2 0.0 1.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|397780649|ref|YP_006545122.1| - 6.3e-06 25.8 0.0 8.2e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DUF123 PF01986.11 gi|590000676|ref|YP_006545123.2| - 6.4e-26 90.3 0.0 8.2e-26 90.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 Lactamase_B PF00753.22 gi|590000677|ref|YP_009001415.1| - 3.3e-23 82.3 5.6 4.5e-23 81.9 3.9 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|590000677|ref|YP_009001415.1| - 4.6e-08 32.8 0.1 5.7e-08 32.5 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Glyco_tranf_2_3 PF13641.1 gi|590000677|ref|YP_009001415.1| - 0.081 12.7 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Lactamase_B_3 PF13483.1 gi|590000677|ref|YP_009001415.1| - 0.13 11.9 0.2 0.19 11.4 0.1 1.3 1 1 0 1 1 1 0 Beta-lactamase superfamily domain ThiC PF01964.13 gi|397780651|ref|YP_006545124.1| - 6.2e-164 545.5 0.0 7.1e-164 545.3 0.0 1.0 1 0 0 1 1 1 1 ThiC family ABC2_membrane PF01061.19 gi|397780652|ref|YP_006545125.1| - 5e-22 78.1 20.3 5e-22 78.1 14.0 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|397780652|ref|YP_006545125.1| - 7.4e-10 38.3 31.1 1.7e-09 37.1 21.5 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|397780653|ref|YP_006545126.1| - 1.3e-26 93.5 0.0 2e-26 92.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780653|ref|YP_006545126.1| - 8.5e-14 52.1 0.4 5.3e-10 39.7 0.1 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397780653|ref|YP_006545126.1| - 0.0026 17.0 0.0 0.1 11.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|397780653|ref|YP_006545126.1| - 0.008 14.6 0.0 2.7 6.3 0.0 2.0 2 0 0 2 2 2 2 AAA domain SRP54 PF00448.17 gi|397780653|ref|YP_006545126.1| - 0.0085 15.5 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|397780653|ref|YP_006545126.1| - 0.013 15.8 0.1 0.02 15.2 0.1 1.2 1 0 0 1 1 1 0 AAA domain DUF4162 PF13732.1 gi|397780653|ref|YP_006545126.1| - 0.014 15.9 0.0 0.022 15.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_16 PF13191.1 gi|397780653|ref|YP_006545126.1| - 0.029 14.3 0.0 0.061 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|397780653|ref|YP_006545126.1| - 0.03 13.8 0.0 0.061 12.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|397780653|ref|YP_006545126.1| - 0.061 13.5 0.0 0.26 11.5 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|397780653|ref|YP_006545126.1| - 0.074 13.0 0.0 0.15 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain AIRC PF00731.15 gi|397780654|ref|YP_006545127.1| - 3.5e-46 156.1 1.5 3.9e-46 156.0 1.1 1.0 1 0 0 1 1 1 1 AIR carboxylase Aminotran_5 PF00266.14 gi|397780655|ref|YP_006545128.1| - 3.4e-36 124.7 0.0 4.5e-36 124.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Dehydratase_MU PF02288.10 gi|397780655|ref|YP_006545128.1| - 0.035 13.8 1.0 0.067 12.9 0.0 2.0 2 1 1 3 3 3 0 Dehydratase medium subunit DMRL_synthase PF00885.14 gi|397780656|ref|YP_006545129.1| - 1.1e-18 67.3 0.1 1.2e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase ThiG PF05690.9 gi|397780656|ref|YP_006545129.1| - 0.056 12.4 0.1 0.08 11.9 0.1 1.4 1 1 0 1 1 1 0 Thiazole biosynthesis protein ThiG DMRL_synthase PF00885.14 gi|397780657|ref|YP_006545130.1| - 8.5e-38 129.2 1.5 9.1e-38 129.1 1.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.16 gi|397780658|ref|YP_006545131.1| - 2.8e-70 237.0 0.0 3.2e-70 236.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|397780658|ref|YP_006545131.1| - 0.00011 21.4 0.0 0.00016 20.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|397780658|ref|YP_006545131.1| - 0.00046 19.0 0.0 0.00072 18.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|397780658|ref|YP_006545131.1| - 0.00079 18.6 0.0 0.0014 17.8 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase TPR_11 PF13414.1 gi|590000678|ref|YP_006545133.2| - 9.1e-126 409.6 74.8 6.9e-16 57.6 1.4 10.1 2 1 9 12 12 12 12 TPR repeat TPR_1 PF00515.23 gi|590000678|ref|YP_006545133.2| - 3.3e-124 399.9 41.6 7.3e-10 38.0 0.2 16.0 16 0 0 16 16 16 15 Tetratricopeptide repeat TPR_2 PF07719.12 gi|590000678|ref|YP_006545133.2| - 8.7e-108 343.8 54.5 4.2e-08 32.5 0.1 16.0 16 0 0 16 16 16 15 Tetratricopeptide repeat TPR_16 PF13432.1 gi|590000678|ref|YP_006545133.2| - 2.3e-77 254.2 94.0 2.5e-10 40.7 1.0 10.9 1 1 10 13 13 13 13 Tetratricopeptide repeat TPR_8 PF13181.1 gi|590000678|ref|YP_006545133.2| - 3.4e-69 223.5 15.6 1.8e-05 24.1 0.0 16.0 13 3 3 16 16 16 14 Tetratricopeptide repeat TPR_17 PF13431.1 gi|590000678|ref|YP_006545133.2| - 2e-65 211.5 34.1 0.00026 20.9 0.0 16.1 16 0 0 16 16 16 13 Tetratricopeptide repeat TPR_14 PF13428.1 gi|590000678|ref|YP_006545133.2| - 1.7e-59 192.8 48.8 1.2e-05 25.5 0.2 15.6 1 1 15 16 16 16 14 Tetratricopeptide repeat TPR_12 PF13424.1 gi|590000678|ref|YP_006545133.2| - 4.2e-59 196.4 50.2 6.3e-08 32.4 0.2 10.0 1 1 10 11 11 11 11 Tetratricopeptide repeat TPR_9 PF13371.1 gi|590000678|ref|YP_006545133.2| - 2.1e-45 152.4 57.6 1.5e-07 31.1 1.0 10.5 1 1 12 13 13 13 13 Tetratricopeptide repeat TPR_19 PF14559.1 gi|590000678|ref|YP_006545133.2| - 1.3e-44 150.3 23.7 2.5e-05 24.5 0.1 9.0 2 1 7 11 11 11 11 Tetratricopeptide repeat TPR_7 PF13176.1 gi|590000678|ref|YP_006545133.2| - 1e-40 134.3 49.7 0.00053 19.5 0.2 16.0 15 1 1 16 16 16 13 Tetratricopeptide repeat Apc3 PF12895.2 gi|590000678|ref|YP_006545133.2| - 9.3e-34 115.4 31.8 3.8e-10 39.7 1.2 7.4 1 1 8 10 10 10 9 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|590000678|ref|YP_006545133.2| - 2.9e-27 93.2 38.8 0.0056 17.0 0.1 14.4 15 0 0 15 15 14 6 Tetratricopeptide repeat TPR_15 PF13429.1 gi|590000678|ref|YP_006545133.2| - 1.2e-13 50.7 20.7 0.0033 16.5 0.1 8.2 1 1 3 7 7 7 5 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|590000678|ref|YP_006545133.2| - 6.6e-13 48.3 34.7 0.19 11.6 0.0 13.1 14 1 1 15 15 14 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|590000678|ref|YP_006545133.2| - 1.6e-12 46.9 62.5 0.13 12.2 0.6 14.5 14 1 1 15 15 15 5 Tetratricopeptide repeat NARP1 PF12569.3 gi|590000678|ref|YP_006545133.2| - 9.7e-12 44.4 7.5 0.047 12.4 0.0 6.5 2 2 4 8 8 8 4 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|590000678|ref|YP_006545133.2| - 3e-11 43.0 28.6 0.11 12.4 0.2 11.3 7 4 4 11 11 11 4 MIT (microtubule interacting and transport) domain BTAD PF03704.12 gi|590000678|ref|YP_006545133.2| - 1.3e-10 41.7 37.9 0.00084 19.6 0.9 6.7 3 2 3 7 7 7 4 Bacterial transcriptional activator domain TPR_20 PF14561.1 gi|590000678|ref|YP_006545133.2| - 3.8e-06 26.9 9.6 1.4 9.1 0.0 7.1 4 2 3 8 8 8 1 Tetratricopeptide repeat DUF3856 PF12968.2 gi|590000678|ref|YP_006545133.2| - 3.3e-05 23.7 15.2 4.2 7.1 0.0 9.6 4 3 6 10 10 10 1 Domain of Unknown Function (DUF3856) Coatomer_E PF04733.9 gi|590000678|ref|YP_006545133.2| - 5.7e-05 22.4 3.0 0.61 9.2 0.1 4.5 2 2 2 6 6 6 2 Coatomer epsilon subunit DUF627 PF04781.7 gi|590000678|ref|YP_006545133.2| - 0.00018 21.0 2.2 3.7 7.1 0.0 6.0 5 2 3 8 8 7 1 Protein of unknown function (DUF627) ChAPs PF09295.5 gi|590000678|ref|YP_006545133.2| - 0.0085 14.8 0.1 27 3.3 0.0 4.1 4 1 0 4 4 4 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_3 PF07720.7 gi|590000678|ref|YP_006545133.2| - 0.011 15.5 28.0 0.26 11.1 0.0 9.4 12 0 0 12 12 9 0 Tetratricopeptide repeat APP_E2 PF12925.2 gi|590000678|ref|YP_006545133.2| - 0.042 13.4 0.0 4.2 6.9 0.0 3.5 2 1 1 4 4 4 0 E2 domain of amyloid precursor protein TraD PF06412.6 gi|590000678|ref|YP_006545133.2| - 0.077 12.6 0.3 99 2.6 0.0 5.0 6 0 0 6 6 4 0 Conjugal transfer protein TraD Rapsyn_N PF10579.4 gi|590000678|ref|YP_006545133.2| - 0.12 12.2 0.9 17 5.2 0.0 4.5 5 2 2 7 7 6 0 Rapsyn N-terminal myristoylation and linker region SNAP PF14938.1 gi|590000678|ref|YP_006545133.2| - 0.32 10.0 18.2 1.4 8.0 1.4 6.3 1 1 3 5 5 5 0 Soluble NSF attachment protein, SNAP PPR PF01535.15 gi|590000678|ref|YP_006545133.2| - 0.64 10.1 12.9 15 5.8 0.0 8.1 11 0 0 11 11 9 0 PPR repeat DUF1896 PF08989.5 gi|590000678|ref|YP_006545133.2| - 4.2 7.2 9.5 0.69 9.7 0.0 4.4 5 3 3 8 8 6 0 Domain of unknown function (DUF1896) RadC PF04002.10 gi|397780660|ref|YP_006545134.1| - 1.9e-40 137.3 0.0 2.5e-40 136.9 0.0 1.2 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.1 gi|397780660|ref|YP_006545134.1| - 0.007 15.9 0.0 0.012 15.2 0.0 1.7 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain HHH PF00633.18 gi|397780660|ref|YP_006545134.1| - 0.0085 15.7 0.0 0.02 14.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Toxin-JAB1 PF15659.1 gi|397780660|ref|YP_006545134.1| - 0.042 13.7 0.0 0.066 13.0 0.0 1.3 1 0 0 1 1 1 0 JAB-like toxin 1 Yip1 PF04893.12 gi|397780662|ref|YP_006545135.1| - 7e-33 113.5 20.9 8.8e-33 113.2 14.5 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|397780662|ref|YP_006545135.1| - 6.8e-08 32.3 14.3 9.2e-08 31.9 9.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) YuiB PF14068.1 gi|397780662|ref|YP_006545135.1| - 0.095 13.0 8.1 8.5 6.7 0.0 3.7 2 1 1 3 3 3 0 Putative membrane protein CARDB PF07705.6 gi|397780663|ref|YP_006545136.1| - 4.1e-08 33.1 0.3 5.8e-06 26.2 0.0 3.1 3 1 0 3 3 3 1 CARDB DUF11 PF01345.13 gi|397780663|ref|YP_006545136.1| - 0.059 13.4 11.3 0.096 12.7 0.2 4.0 4 0 0 4 4 4 0 Domain of unknown function DUF11 ABC_tran PF00005.22 gi|397780664|ref|YP_006545137.1| - 1.1e-33 116.3 0.0 1.8e-33 115.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780664|ref|YP_006545137.1| - 4.3e-10 40.0 0.0 4.5e-05 23.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397780664|ref|YP_006545137.1| - 1.8e-07 30.5 0.1 0.00032 19.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|397780664|ref|YP_006545137.1| - 5.6e-07 29.2 0.5 0.0096 15.3 0.1 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|397780664|ref|YP_006545137.1| - 2.3e-05 23.8 0.2 4.2e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|397780664|ref|YP_006545137.1| - 0.00018 21.5 0.0 0.00023 21.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|397780664|ref|YP_006545137.1| - 0.00037 19.7 0.0 0.00055 19.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|397780664|ref|YP_006545137.1| - 0.0026 17.1 0.2 0.021 14.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|397780664|ref|YP_006545137.1| - 0.0036 16.2 0.1 0.0074 15.2 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|397780664|ref|YP_006545137.1| - 0.0044 17.1 0.0 0.02 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|397780664|ref|YP_006545137.1| - 0.0044 17.3 0.0 0.19 12.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|397780664|ref|YP_006545137.1| - 0.0094 15.8 0.1 0.089 12.7 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|397780664|ref|YP_006545137.1| - 0.011 16.5 0.0 0.018 15.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|397780664|ref|YP_006545137.1| - 0.012 15.1 0.3 0.24 10.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|397780664|ref|YP_006545137.1| - 0.013 15.4 0.1 0.16 11.8 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|397780664|ref|YP_006545137.1| - 0.015 15.1 0.1 0.036 13.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|397780664|ref|YP_006545137.1| - 0.023 13.7 0.0 0.52 9.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|397780664|ref|YP_006545137.1| - 0.025 14.2 0.0 0.053 13.2 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase Mg_chelatase PF01078.16 gi|397780664|ref|YP_006545137.1| - 0.029 13.5 0.1 0.15 11.1 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|397780664|ref|YP_006545137.1| - 0.042 13.6 0.1 0.26 11.0 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain AAA_23 PF13476.1 gi|397780664|ref|YP_006545137.1| - 0.049 13.9 0.1 0.085 13.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|397780664|ref|YP_006545137.1| - 0.058 12.8 0.1 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_24 PF13479.1 gi|397780664|ref|YP_006545137.1| - 0.058 12.9 0.1 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|397780664|ref|YP_006545137.1| - 0.066 12.9 0.2 0.24 11.0 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|397780664|ref|YP_006545137.1| - 0.11 12.6 0.4 1.5 9.0 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|397780664|ref|YP_006545137.1| - 0.13 12.2 0.4 0.19 11.6 0.3 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA12 PF10443.4 gi|397780664|ref|YP_006545137.1| - 0.16 10.4 0.1 0.36 9.2 0.0 1.5 1 1 1 2 2 2 0 RNA12 protein MacB_PCD PF12704.2 gi|397780665|ref|YP_006545138.1| - 1.7e-33 116.1 0.5 1.7e-33 116.1 0.3 2.5 3 1 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|397780665|ref|YP_006545138.1| - 3e-24 85.0 14.6 1.4e-22 79.6 6.7 2.2 2 0 0 2 2 2 2 FtsX-like permease family DUF2953 PF11167.3 gi|397780667|ref|YP_006545140.1| - 1.4e-11 44.0 0.1 1.4e-11 44.0 0.0 2.2 3 0 0 3 3 3 1 Protein of unknown function (DUF2953) EI24 PF07264.6 gi|397780667|ref|YP_006545140.1| - 0.0079 15.6 0.2 0.012 15.0 0.2 1.3 1 0 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) Spore_YtfJ PF09579.5 gi|397780668|ref|YP_006545141.1| - 9.7e-16 57.4 7.3 1.4e-15 56.8 5.1 1.2 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) Methyltransf_18 PF12847.2 gi|397780669|ref|YP_006545142.1| - 2.3e-13 50.7 0.0 4.3e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|397780669|ref|YP_006545142.1| - 1e-08 35.5 0.0 1.6e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397780669|ref|YP_006545142.1| - 1e-08 34.8 0.0 1.3e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397780669|ref|YP_006545142.1| - 1.3e-07 31.5 0.0 1.9e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397780669|ref|YP_006545142.1| - 2.3e-07 31.1 0.0 4e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|397780669|ref|YP_006545142.1| - 2.4e-06 27.8 0.0 4.6e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|397780669|ref|YP_006545142.1| - 6.3e-06 25.4 0.0 9e-06 24.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|397780669|ref|YP_006545142.1| - 9.4e-06 25.6 0.2 2.4e-05 24.3 0.2 1.7 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|397780669|ref|YP_006545142.1| - 4.2e-05 22.7 0.0 6.1e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|397780669|ref|YP_006545142.1| - 0.00022 20.8 0.0 0.00031 20.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|397780669|ref|YP_006545142.1| - 0.00031 19.8 0.0 0.00047 19.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|397780669|ref|YP_006545142.1| - 0.0004 19.8 0.0 0.00059 19.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|397780669|ref|YP_006545142.1| - 0.00062 18.9 0.0 0.00086 18.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB GidB PF02527.10 gi|397780669|ref|YP_006545142.1| - 0.0031 16.6 0.0 0.0046 16.1 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G PrmA PF06325.8 gi|397780669|ref|YP_006545142.1| - 0.0044 16.1 0.0 0.0073 15.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DUF3419 PF11899.3 gi|397780669|ref|YP_006545142.1| - 0.016 13.9 0.0 0.031 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) AMP-binding PF00501.23 gi|397780669|ref|YP_006545142.1| - 0.083 11.2 0.0 0.61 8.4 0.0 1.7 1 1 1 2 2 2 0 AMP-binding enzyme DUF457 PF04307.9 gi|590000679|ref|YP_006545143.2| - 1.8e-16 59.8 21.8 3.9e-16 58.7 15.1 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|590000679|ref|YP_006545143.2| - 6.1e-06 25.9 3.3 1.3e-05 24.9 2.3 1.7 1 1 0 1 1 1 1 Zinc dependent phospholipase C DUF4184 PF13803.1 gi|590000679|ref|YP_006545143.2| - 0.0071 15.6 1.0 0.0071 15.6 0.7 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4184) DUF3687 PF12459.3 gi|590000679|ref|YP_006545143.2| - 0.31 10.2 3.9 1 8.6 2.7 1.8 1 0 0 1 1 1 0 D-Ala-teichoic acid biosynthesis protein DUF3007 PF11460.3 gi|590000679|ref|YP_006545143.2| - 0.67 10.0 3.0 0.47 10.5 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) PALP PF00291.20 gi|397780671|ref|YP_006545144.1| - 5.5e-40 137.4 0.1 7.2e-40 137.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Chorismate_bind PF00425.13 gi|397780672|ref|YP_006545145.1| - 7e-96 320.4 0.0 8.9e-96 320.1 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|397780672|ref|YP_006545145.1| - 2.3e-14 53.5 0.0 2.6e-13 50.1 0.0 2.4 3 1 0 3 3 3 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|397780673|ref|YP_006545146.1| - 2.2e-37 128.3 0.0 2.8e-37 128.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|397780673|ref|YP_006545146.1| - 9.7e-10 38.2 0.1 2.3e-09 37.0 0.1 1.5 1 1 0 1 1 1 1 Peptidase C26 Glycos_transf_3 PF00591.16 gi|397780674|ref|YP_006545147.1| - 1.4e-96 322.7 0.2 2.1e-96 322.2 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|397780674|ref|YP_006545147.1| - 4.4e-23 80.6 2.4 8.8e-23 79.6 1.7 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain IGPS PF00218.16 gi|397780675|ref|YP_006545148.1| - 5.8e-74 248.3 0.0 6.5e-74 248.1 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.14 gi|397780675|ref|YP_006545148.1| - 0.0001 21.8 0.0 0.00017 21.1 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain Peripla_BP_6 PF13458.1 gi|397780675|ref|YP_006545148.1| - 0.066 12.5 0.1 0.089 12.1 0.1 1.3 1 0 0 1 1 1 0 Periplasmic binding protein NMO PF03060.10 gi|397780675|ref|YP_006545148.1| - 0.11 11.6 2.2 1.4 8.0 0.0 2.2 1 1 1 2 2 2 0 Nitronate monooxygenase PRAI PF00697.17 gi|397780676|ref|YP_006545149.1| - 2.2e-28 99.1 0.0 3e-27 95.4 0.0 1.9 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase UPF0180 PF03698.8 gi|397780676|ref|YP_006545149.1| - 0.0031 17.2 0.0 0.0068 16.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0180) BtpA PF03437.10 gi|397780676|ref|YP_006545149.1| - 0.036 13.3 0.1 0.14 11.3 0.0 1.8 2 0 0 2 2 2 0 BtpA family FMN_dh PF01070.13 gi|397780676|ref|YP_006545149.1| - 0.066 12.0 0.4 7.2 5.3 0.4 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase PALP PF00291.20 gi|397780677|ref|YP_006545150.1| - 2.4e-42 145.2 0.2 3.1e-42 144.8 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Phage_min_cap2 PF06152.6 gi|397780677|ref|YP_006545150.1| - 0.16 10.8 0.0 0.23 10.3 0.0 1.1 1 0 0 1 1 1 0 Phage minor capsid protein 2 Trp_syntA PF00290.15 gi|397780678|ref|YP_006545151.1| - 2.2e-84 282.0 0.0 2.8e-84 281.7 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|397780678|ref|YP_006545151.1| - 2.9e-05 23.4 0.1 6.6e-05 22.2 0.0 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|397780678|ref|YP_006545151.1| - 0.0029 16.9 0.2 0.016 14.4 0.4 1.9 2 0 0 2 2 2 1 PcrB family ThiG PF05690.9 gi|397780678|ref|YP_006545151.1| - 0.013 14.6 1.0 0.017 14.1 0.2 1.5 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG NAD_kinase PF01513.16 gi|397780679|ref|YP_006545152.1| - 4.3e-40 137.2 0.0 5.3e-40 136.9 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|397780679|ref|YP_006545152.1| - 0.00025 20.4 0.2 0.00071 19.0 0.1 1.8 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.17 gi|397780679|ref|YP_006545152.1| - 0.0057 16.3 0.1 0.01 15.4 0.1 1.4 1 0 0 1 1 1 1 DeoR C terminal sensor domain Peripla_BP_4 PF13407.1 gi|397780679|ref|YP_006545152.1| - 0.026 13.8 0.2 0.05 12.9 0.1 1.6 1 1 0 1 1 1 0 Periplasmic binding protein domain VWA_2 PF13519.1 gi|397780679|ref|YP_006545152.1| - 0.09 12.8 0.2 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 von Willebrand factor type A domain PHP_C PF13263.1 gi|397780680|ref|YP_006545153.1| - 6.3e-06 25.5 0.1 1.2e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|397780680|ref|YP_006545153.1| - 0.0018 18.1 0.0 0.0031 17.3 0.0 1.5 1 1 0 1 1 1 1 PHP domain TPR_1 PF00515.23 gi|397780681|ref|YP_006545154.1| - 8.8e-62 202.3 0.1 3.9e-09 35.7 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|397780681|ref|YP_006545154.1| - 6.5e-56 181.8 2.8 2.1e-07 30.2 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|397780681|ref|YP_006545154.1| - 4.2e-54 180.0 6.3 3.8e-16 58.4 0.0 4.1 3 1 1 4 4 4 4 TPR repeat TPR_16 PF13432.1 gi|397780681|ref|YP_006545154.1| - 2.6e-42 142.6 25.0 1.7e-08 34.8 0.0 5.1 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|397780681|ref|YP_006545154.1| - 2.6e-42 142.6 6.9 2.3e-08 33.8 0.0 5.0 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|397780681|ref|YP_006545154.1| - 3e-34 114.3 0.9 4.4e-05 23.3 0.0 7.1 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|397780681|ref|YP_006545154.1| - 6e-34 113.4 11.8 1.2e-05 25.5 0.2 7.1 1 1 6 7 7 7 7 Tetratricopeptide repeat TPR_19 PF14559.1 gi|397780681|ref|YP_006545154.1| - 1e-31 109.0 0.3 3.1e-07 30.6 0.0 4.5 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|397780681|ref|YP_006545154.1| - 3.4e-28 95.2 0.0 0.00056 19.5 0.0 7.1 6 1 1 7 7 7 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|397780681|ref|YP_006545154.1| - 6.6e-23 80.3 42.8 2.6e-07 30.4 0.8 4.8 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_7 PF13176.1 gi|397780681|ref|YP_006545154.1| - 1.1e-22 78.0 1.1 0.012 15.3 0.0 6.6 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_6 PF13174.1 gi|397780681|ref|YP_006545154.1| - 1.8e-16 59.3 0.1 0.24 11.9 0.0 7.0 7 0 0 7 7 7 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|397780681|ref|YP_006545154.1| - 5.7e-14 52.0 6.3 2.8e-06 27.3 0.0 4.6 3 2 2 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.1 gi|397780681|ref|YP_006545154.1| - 8.6e-09 35.1 3.4 0.2 11.5 0.0 6.5 6 1 1 7 7 7 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|397780681|ref|YP_006545154.1| - 9.6e-08 31.7 14.2 0.37 10.7 0.2 6.3 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_15 PF13429.1 gi|397780681|ref|YP_006545154.1| - 1.7e-07 30.5 0.3 0.22 10.5 0.0 5.0 1 1 2 4 4 4 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|397780681|ref|YP_006545154.1| - 0.0003 19.6 0.0 0.55 8.9 0.0 3.0 1 1 4 5 5 5 2 NMDA receptor-regulated protein 1 MIT PF04212.13 gi|397780681|ref|YP_006545154.1| - 0.00045 20.0 0.8 23 4.9 0.0 5.6 6 0 0 6 6 6 0 MIT (microtubule interacting and transport) domain BTAD PF03704.12 gi|397780681|ref|YP_006545154.1| - 0.00084 19.6 6.9 0.00094 19.5 1.1 3.1 2 1 0 3 3 3 1 Bacterial transcriptional activator domain TPR_4 PF07721.9 gi|397780681|ref|YP_006545154.1| - 0.0066 16.7 23.0 0.58 10.7 0.5 6.7 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|397780681|ref|YP_006545154.1| - 0.045 13.8 0.0 12 6.1 0.0 3.6 3 2 1 4 4 3 0 Tetratricopeptide repeat PPR PF01535.15 gi|397780681|ref|YP_006545154.1| - 0.076 13.0 1.8 20 5.4 0.0 4.9 7 0 0 7 7 5 0 PPR repeat Myb_DNA-bind_6 PF13921.1 gi|397780681|ref|YP_006545154.1| - 0.079 13.0 0.0 5.7 7.1 0.0 3.1 3 0 0 3 3 3 0 Myb-like DNA-binding domain Cyclophil_like PF04126.8 gi|397780683|ref|YP_006545155.1| - 9.9e-36 121.9 0.0 1.1e-35 121.7 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like HNH PF01844.18 gi|397780684|ref|YP_006545157.1| - 6.9e-05 22.6 7.1 0.00015 21.6 4.9 1.6 1 0 0 1 1 1 1 HNH endonuclease Endonuclease_7 PF02945.10 gi|397780684|ref|YP_006545157.1| - 0.067 12.8 2.9 0.21 11.2 2.0 1.8 1 1 1 2 2 2 0 Recombination endonuclease VII HNH_3 PF13392.1 gi|397780684|ref|YP_006545157.1| - 0.13 11.7 0.9 0.24 10.8 0.6 1.3 1 0 0 1 1 1 0 HNH endonuclease RRN7 PF11781.3 gi|397780684|ref|YP_006545157.1| - 0.62 9.6 5.7 28 4.3 0.0 3.3 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 SDH_sah PF01972.11 gi|397780685|ref|YP_006545158.1| - 2.3e-116 387.5 0.0 2.5e-116 387.4 0.0 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|397780685|ref|YP_006545158.1| - 6.7e-06 25.8 0.0 1.1e-05 25.1 0.0 1.6 1 1 0 1 1 1 1 Clp protease ECH PF00378.15 gi|397780685|ref|YP_006545158.1| - 0.002 17.3 0.0 0.0029 16.7 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Peptidase_S49 PF01343.13 gi|397780685|ref|YP_006545158.1| - 0.045 13.5 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S49 IMS PF00817.15 gi|397780686|ref|YP_006545159.1| - 1.3e-46 158.0 0.0 2.3e-46 157.2 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|397780686|ref|YP_006545159.1| - 9.1e-23 80.5 0.0 1.5e-22 79.9 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|397780686|ref|YP_006545159.1| - 1.4e-09 37.3 0.1 3.2e-09 36.3 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|397780686|ref|YP_006545159.1| - 0.00042 20.4 7.5 0.0022 18.1 3.0 3.0 2 1 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|397780686|ref|YP_006545159.1| - 0.021 14.7 0.0 0.042 13.7 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus DUF4332 PF14229.1 gi|397780686|ref|YP_006545159.1| - 0.17 11.8 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) MCR_alpha_N PF02745.10 gi|397780687|ref|YP_006545160.1| - 4.8e-135 448.9 0.2 6.5e-135 448.4 0.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|397780687|ref|YP_006545160.1| - 3.5e-66 220.9 1.6 7.2e-66 219.9 1.1 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_gamma PF02240.11 gi|397780688|ref|YP_006545161.1| - 1.4e-116 387.9 0.1 1.6e-116 387.7 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit Glycolipid_bind PF06475.6 gi|397780688|ref|YP_006545161.1| - 0.082 12.0 0.0 0.46 9.5 0.0 1.9 2 0 0 2 2 2 0 Putative glycolipid-binding MCR_D PF02505.9 gi|397780689|ref|YP_006545162.1| - 1.1e-44 151.6 0.0 1.3e-44 151.4 0.0 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D DUF134 PF02001.11 gi|397780689|ref|YP_006545162.1| - 0.051 13.4 0.2 0.12 12.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF134 MCR_beta PF02241.13 gi|397780690|ref|YP_006545163.1| - 3.1e-117 390.3 5.4 4.8e-117 389.7 3.7 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|397780690|ref|YP_006545163.1| - 3.7e-60 202.5 1.1 5.6e-60 201.9 0.8 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain Molydop_binding PF01568.16 gi|397780691|ref|YP_006545164.1| - 2e-11 43.7 0.0 2.4e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|397780692|ref|YP_006545165.1| - 6.8e-14 51.4 0.0 1.5e-13 50.2 0.0 1.6 2 1 0 2 2 2 1 Molybdopterin oxidoreductase Amidohydro_3 PF07969.6 gi|397780693|ref|YP_006545166.1| - 2.5e-57 194.9 0.1 3.1e-57 194.6 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|397780693|ref|YP_006545166.1| - 4.9e-09 35.8 0.5 1.8e-08 34.0 0.0 2.3 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|397780693|ref|YP_006545166.1| - 1.7e-05 25.0 0.4 0.082 12.9 0.0 2.6 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|397780693|ref|YP_006545166.1| - 0.00055 19.6 0.1 0.024 14.3 0.0 2.3 2 0 0 2 2 2 1 Amidohydrolase family Urease_alpha PF00449.15 gi|397780693|ref|YP_006545166.1| - 0.026 14.6 0.8 0.048 13.8 0.5 1.4 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain GXGXG PF01493.14 gi|397780694|ref|YP_006545167.1| - 8.7e-33 113.0 28.2 5e-31 107.2 15.7 1.8 1 1 1 2 2 2 2 GXGXG motif MoeA_N PF03453.12 gi|397780695|ref|YP_006545168.1| - 6e-43 146.0 0.7 8.5e-43 145.4 0.5 1.2 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|397780695|ref|YP_006545168.1| - 2.5e-23 82.0 0.1 4.2e-23 81.3 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|397780695|ref|YP_006545168.1| - 6e-16 58.1 0.0 1.7e-15 56.6 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.12 gi|397780696|ref|YP_006545169.1| - 1.8e-29 102.1 0.0 5.7e-28 97.2 0.0 2.4 1 1 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|397780696|ref|YP_006545169.1| - 5.1e-24 84.3 0.1 7.4e-24 83.7 0.1 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|397780696|ref|YP_006545169.1| - 7.7e-11 41.7 0.1 3.8e-10 39.5 0.0 2.2 2 1 0 2 2 2 1 MoeA C-terminal region (domain IV) DUF3906 PF13046.1 gi|397780697|ref|YP_006545170.1| - 0.051 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3906) Ribonucleas_3_3 PF14622.1 gi|397780698|ref|YP_006545171.1| - 1.4e-23 83.2 0.0 2.5e-23 82.4 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.21 gi|397780698|ref|YP_006545171.1| - 2.4e-13 50.5 0.0 1.6e-12 47.9 0.0 2.0 1 1 0 1 1 1 1 Ribonuclease III domain dsrm PF00035.20 gi|397780698|ref|YP_006545171.1| - 6.1e-07 29.9 0.0 9.1e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Double-stranded RNA binding motif DUF362 PF04015.7 gi|397780699|ref|YP_006545172.1| - 1.8e-60 203.9 0.1 2.4e-60 203.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|397780699|ref|YP_006545172.1| - 2.6e-08 33.0 18.5 1.8e-05 24.1 3.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397780699|ref|YP_006545172.1| - 3.6e-07 30.1 5.7 0.0015 18.4 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397780699|ref|YP_006545172.1| - 5.9e-07 29.1 13.3 1.3e-06 28.0 9.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397780699|ref|YP_006545172.1| - 2.1e-06 27.3 20.1 0.0011 18.7 3.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397780699|ref|YP_006545172.1| - 2.5e-06 27.1 17.4 5.7e-05 22.7 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|397780699|ref|YP_006545172.1| - 2.8e-06 27.0 11.1 0.00079 19.2 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397780699|ref|YP_006545172.1| - 9.3e-06 25.9 16.3 2.3e-05 24.7 11.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397780699|ref|YP_006545172.1| - 4.2e-05 23.7 15.9 9e-05 22.6 11.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397780699|ref|YP_006545172.1| - 0.0019 18.3 3.2 0.0019 18.3 2.2 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|397780699|ref|YP_006545172.1| - 0.035 14.4 1.7 0.035 14.4 1.2 2.5 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397780699|ref|YP_006545172.1| - 0.055 14.2 1.3 0.055 14.2 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|397780699|ref|YP_006545172.1| - 0.079 13.5 15.1 0.72 10.4 2.5 3.0 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF1287 PF06940.6 gi|397780699|ref|YP_006545172.1| - 0.18 11.2 0.1 0.27 10.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1287) Fer4_18 PF13746.1 gi|397780699|ref|YP_006545172.1| - 1.2 9.5 19.5 0.069 13.5 3.2 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|397780699|ref|YP_006545172.1| - 1.8 9.3 21.0 0.086 13.4 4.0 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|397780699|ref|YP_006545172.1| - 1.8 9.0 13.5 0.46 10.9 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain HIT PF01230.18 gi|397780700|ref|YP_006545173.1| - 1.8e-23 82.8 0.0 2.1e-23 82.6 0.0 1.0 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|397780700|ref|YP_006545173.1| - 2.5e-11 43.8 0.0 2.9e-11 43.6 0.0 1.0 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|397780700|ref|YP_006545173.1| - 0.0086 15.7 1.2 0.03 13.9 0.8 1.8 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Oxidored_q1 PF00361.15 gi|397780701|ref|YP_006545174.1| - 4.3e-49 167.1 21.9 4.3e-49 167.1 15.2 3.7 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|397780701|ref|YP_006545174.1| - 2.1e-06 27.1 3.3 2.8e-06 26.7 0.7 2.6 1 1 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADHdh PF00146.16 gi|397780702|ref|YP_006545175.1| - 3.3e-16 59.2 12.6 1.1e-15 57.5 8.8 1.7 1 1 0 1 1 1 1 NADH dehydrogenase MerT PF02411.10 gi|397780702|ref|YP_006545175.1| - 0.38 10.5 8.3 0.065 13.0 0.5 2.9 2 1 0 2 2 2 0 MerT mercuric transport protein Oxidored_q6 PF01058.17 gi|397780703|ref|YP_006545176.1| - 1.6e-29 102.1 1.8 2.1e-29 101.7 1.3 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit PNP_UDP_1 PF01048.15 gi|397780703|ref|YP_006545176.1| - 0.054 12.4 0.1 0.069 12.1 0.1 1.2 1 0 0 1 1 1 0 Phosphorylase superfamily Complex1_30kDa PF00329.14 gi|397780704|ref|YP_006545177.1| - 2.4e-13 50.1 0.0 3.2e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.14 gi|397780705|ref|YP_006545178.1| - 6.7e-43 146.6 0.0 2e-29 102.4 0.0 2.3 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|397780705|ref|YP_006545178.1| - 8.3e-12 44.6 1.5 8.9e-11 41.2 0.0 2.5 2 1 0 2 2 2 1 Nickel-dependent hydrogenase Fer4 PF00037.22 gi|397780706|ref|YP_006545179.1| - 5.7e-11 41.5 12.2 5.4e-06 25.7 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397780706|ref|YP_006545179.1| - 9.6e-11 41.9 24.9 9.7e-09 35.4 8.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397780706|ref|YP_006545179.1| - 1.5e-09 37.2 13.0 1.6e-06 27.7 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|397780706|ref|YP_006545179.1| - 5.1e-09 36.7 9.0 0.00056 20.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|397780706|ref|YP_006545179.1| - 2.2e-08 33.7 11.0 3.4e-08 33.1 7.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397780706|ref|YP_006545179.1| - 4.3e-08 32.6 12.6 7.5e-05 22.4 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|397780706|ref|YP_006545179.1| - 5.2e-07 29.8 11.6 9e-07 29.0 8.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|397780706|ref|YP_006545179.1| - 3.8e-06 26.7 4.4 5.2e-06 26.2 3.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397780706|ref|YP_006545179.1| - 1.5e-05 24.7 20.3 0.00014 21.6 8.3 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397780706|ref|YP_006545179.1| - 0.00015 22.2 12.6 0.05 14.1 2.1 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|397780706|ref|YP_006545179.1| - 0.00019 21.3 13.3 0.0087 16.0 10.3 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397780706|ref|YP_006545179.1| - 0.00036 20.7 13.4 0.033 14.5 1.0 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain DUF1059 PF06348.6 gi|397780706|ref|YP_006545179.1| - 0.001 18.8 0.1 0.002 17.9 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) Fer4_4 PF12800.2 gi|397780706|ref|YP_006545179.1| - 0.0022 18.1 16.4 0.0034 17.6 2.2 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain YLP PF02757.12 gi|397780706|ref|YP_006545179.1| - 0.087 12.5 0.9 0.19 11.5 0.6 1.6 1 0 0 1 1 1 0 YLP motif Fer4_3 PF12798.2 gi|397780706|ref|YP_006545179.1| - 0.091 13.3 5.1 0.091 13.3 3.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|397780706|ref|YP_006545179.1| - 0.092 13.1 15.6 0.11 12.9 1.3 2.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|397780706|ref|YP_006545179.1| - 0.39 11.1 16.8 0.99 9.8 3.1 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|397780707|ref|YP_006545180.1| - 1.8e-27 96.5 0.3 2.7e-27 95.9 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|397780707|ref|YP_006545180.1| - 6.5e-24 84.0 0.0 1.1e-23 83.3 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|397780707|ref|YP_006545180.1| - 1.1e-16 60.9 1.2 6.1e-14 52.1 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|397780707|ref|YP_006545180.1| - 6e-07 29.7 0.2 0.0022 18.1 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|397780707|ref|YP_006545180.1| - 7.5e-07 28.3 2.8 0.0041 16.0 0.5 2.5 2 0 0 2 2 2 2 FAD binding domain GIDA PF01134.17 gi|397780707|ref|YP_006545180.1| - 2.2e-05 23.4 4.4 0.00012 21.0 1.2 2.4 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|397780707|ref|YP_006545180.1| - 0.00031 19.3 0.9 0.16 10.4 0.1 2.9 3 1 1 4 4 4 2 HI0933-like protein 3HCDH_N PF02737.13 gi|397780707|ref|YP_006545180.1| - 0.0011 18.6 4.0 0.25 10.9 0.4 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|397780707|ref|YP_006545180.1| - 0.0014 17.6 13.6 0.0025 16.7 1.4 4.0 4 0 0 4 4 4 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|397780707|ref|YP_006545180.1| - 0.0022 17.5 0.2 0.75 9.3 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.1 gi|397780707|ref|YP_006545180.1| - 0.017 15.1 5.1 0.018 15.0 0.4 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|397780707|ref|YP_006545180.1| - 0.025 13.6 0.1 3.2 6.6 0.0 2.4 2 0 0 2 2 2 0 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|397780707|ref|YP_006545180.1| - 0.028 13.5 0.3 0.58 9.2 0.1 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GDI PF00996.13 gi|397780707|ref|YP_006545180.1| - 0.031 12.5 0.0 0.044 12.1 0.0 1.1 1 0 0 1 1 1 0 GDP dissociation inhibitor Lycopene_cycl PF05834.7 gi|397780707|ref|YP_006545180.1| - 0.058 12.2 0.1 0.11 11.4 0.1 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein Thi4 PF01946.12 gi|397780707|ref|YP_006545180.1| - 0.063 12.3 1.9 0.56 9.2 0.1 2.8 3 0 0 3 3 3 0 Thi4 family Poly_export PF02563.11 gi|397780709|ref|YP_006545182.1| - 0.00029 20.5 0.1 0.0007 19.3 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis/export protein DUF4115 PF13464.1 gi|397780709|ref|YP_006545182.1| - 0.14 11.7 0.2 0.48 10.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4115) CxxCxxCC PF03692.10 gi|397780710|ref|YP_006545183.1| - 1.1e-07 32.1 4.4 3.3e-07 30.6 2.7 2.0 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Na_Ca_ex PF01699.19 gi|397780711|ref|YP_006545184.1| - 2.8e-43 146.9 43.0 8.6e-23 80.4 12.7 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Beta_propel PF09826.4 gi|397780712|ref|YP_006545185.1| - 3.1e-175 583.4 0.1 3.6e-175 583.2 0.1 1.0 1 0 0 1 1 1 1 Beta propeller domain E1-E2_ATPase PF00122.15 gi|397780713|ref|YP_006545186.1| - 1.4e-67 227.1 0.6 3.9e-67 225.6 0.4 1.9 1 0 0 1 1 1 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|397780713|ref|YP_006545186.1| - 9.5e-41 139.3 2.9 9.5e-41 139.3 2.0 2.1 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|397780713|ref|YP_006545186.1| - 3e-29 102.9 0.0 2.2e-28 100.1 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|397780713|ref|YP_006545186.1| - 9.7e-22 76.2 0.0 2.4e-21 74.9 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|397780713|ref|YP_006545186.1| - 3.9e-15 56.5 0.0 1.1e-14 55.0 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|397780713|ref|YP_006545186.1| - 2.6e-12 46.5 0.0 4.9e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|397780713|ref|YP_006545186.1| - 2.5e-08 33.8 0.0 9.6e-06 25.3 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|397780713|ref|YP_006545186.1| - 0.00083 19.6 0.0 0.0017 18.6 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Cupin_2 PF07883.6 gi|590000680|ref|YP_006545187.2| - 1e-10 40.9 0.0 2.1e-10 39.9 0.0 1.6 1 1 1 2 2 2 1 Cupin domain AraC_binding PF02311.14 gi|590000680|ref|YP_006545187.2| - 2e-07 30.7 0.0 2.7e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain EutQ PF06249.7 gi|590000680|ref|YP_006545187.2| - 0.0024 17.4 0.0 0.003 17.1 0.0 1.2 1 1 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_6 PF12852.2 gi|590000680|ref|YP_006545187.2| - 0.0028 17.2 0.0 0.0035 16.9 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|590000680|ref|YP_006545187.2| - 0.029 13.7 0.0 0.045 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|590000680|ref|YP_006545187.2| - 0.034 13.7 0.0 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain ARD PF03079.9 gi|590000680|ref|YP_006545187.2| - 0.074 13.0 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family Pilus_CpaD PF09476.5 gi|590000680|ref|YP_006545187.2| - 0.15 11.5 0.0 0.25 10.7 0.0 1.3 1 1 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) Radical_SAM PF04055.16 gi|397780715|ref|YP_006545188.1| - 7.1e-08 32.8 0.1 3.4e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|397780715|ref|YP_006545188.1| - 1.5e-06 28.3 0.0 2.8e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|397780715|ref|YP_006545188.1| - 0.00077 19.4 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|397780715|ref|YP_006545188.1| - 0.037 14.3 0.2 0.1 12.9 0.2 1.8 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain Gly-zipper_OmpA PF13436.1 gi|397780716|ref|YP_006545189.1| - 4.8e-06 26.2 10.9 9e-06 25.3 7.6 1.4 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain Gly-zipper_Omp PF13488.1 gi|397780716|ref|YP_006545189.1| - 0.0064 16.0 28.4 0.012 15.2 19.7 1.4 1 0 0 1 1 1 1 Glycine zipper Rick_17kDa_Anti PF05433.10 gi|397780716|ref|YP_006545189.1| - 0.0091 15.6 30.2 0.02 14.5 20.9 1.6 1 0 0 1 1 1 1 Glycine zipper 2TM domain Vps51 PF08700.6 gi|397780716|ref|YP_006545189.1| - 0.012 15.4 0.3 0.022 14.5 0.2 1.5 1 0 0 1 1 1 0 Vps51/Vps67 Gly-zipper_YMGG PF13441.1 gi|397780716|ref|YP_006545189.1| - 0.025 14.0 27.9 0.048 13.1 19.3 1.5 1 0 0 1 1 1 0 YMGG-like Gly-zipper Prok-TraM PF09228.5 gi|397780716|ref|YP_006545189.1| - 1.5 9.0 5.7 2.8 8.1 0.1 2.2 1 1 1 2 2 2 0 Prokaryotic Transcriptional repressor TraM Flavin_Reduct PF01613.13 gi|397780718|ref|YP_006545191.1| - 1.5e-27 96.3 0.0 1.8e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF475 PF04332.10 gi|397780719|ref|YP_006545192.1| - 4.2e-48 164.4 12.5 5.2e-48 164.1 8.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF475) TerC PF03741.11 gi|397780719|ref|YP_006545192.1| - 4.2e-18 65.4 14.5 1.4e-08 34.4 5.0 2.2 1 1 1 2 2 2 2 Integral membrane protein TerC family Internalin_N PF12354.3 gi|397780719|ref|YP_006545192.1| - 0.73 9.4 2.9 4.2 7.0 0.0 3.3 2 1 1 3 3 3 0 Bacterial adhesion/invasion protein N terminal Halogen_Hydrol PF10112.4 gi|397780719|ref|YP_006545192.1| - 2.1 7.7 5.0 3.9 6.8 0.5 2.5 2 0 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein CBS PF00571.23 gi|397780720|ref|YP_006545193.1| - 2.1e-29 101.0 6.9 1.9e-16 59.5 0.6 2.1 2 0 0 2 2 2 2 CBS domain PRC PF05239.11 gi|397780720|ref|YP_006545193.1| - 0.18 11.6 2.4 0.83 9.5 0.0 2.6 3 0 0 3 3 3 0 PRC-barrel domain PBP PF01161.15 gi|397780721|ref|YP_006545194.1| - 1.1e-17 64.2 0.0 1.4e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein PBP PF01161.15 gi|397780722|ref|YP_006545195.1| - 4.2e-24 85.0 0.0 5e-24 84.8 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Pribosyltran PF00156.22 gi|397780723|ref|YP_006545196.1| - 1.3e-22 79.7 0.1 1.9e-22 79.2 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|397780723|ref|YP_006545196.1| - 0.00079 18.7 0.0 0.0011 18.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|397780723|ref|YP_006545196.1| - 0.059 12.5 0.0 0.084 12.0 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase DUF3650 PF12368.3 gi|397780723|ref|YP_006545196.1| - 0.15 11.6 0.9 9.9 5.7 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3650) RVT_3 PF13456.1 gi|397780724|ref|YP_006545197.1| - 1.9e-18 66.0 0.2 2.4e-18 65.6 0.1 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|397780724|ref|YP_006545197.1| - 4.3e-17 62.6 0.0 5.3e-17 62.3 0.0 1.0 1 0 0 1 1 1 1 RNase H UPF0066 PF01980.11 gi|397780725|ref|YP_006545198.1| - 4.2e-39 133.2 0.0 5e-39 132.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 ParA PF10609.4 gi|397780726|ref|YP_006545199.1| - 8.9e-36 121.6 0.0 1.4e-35 120.9 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|397780726|ref|YP_006545199.1| - 1.2e-21 76.9 0.0 1.8e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|397780726|ref|YP_006545199.1| - 6.1e-10 39.2 0.0 2e-08 34.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|397780726|ref|YP_006545199.1| - 5.5e-08 32.2 1.7 4e-07 29.3 0.1 2.5 2 1 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|397780726|ref|YP_006545199.1| - 4.7e-07 29.1 0.0 1.1e-06 27.9 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|397780726|ref|YP_006545199.1| - 0.0014 18.0 0.0 0.0029 17.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|397780726|ref|YP_006545199.1| - 0.0015 18.1 1.3 1.5 8.3 0.2 2.5 2 1 0 2 2 2 2 AAA domain Fer4_NifH PF00142.13 gi|397780726|ref|YP_006545199.1| - 0.0018 17.5 0.4 0.006 15.7 0.0 2.0 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.15 gi|397780726|ref|YP_006545199.1| - 0.0051 16.4 0.0 0.0067 16.0 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase SRP54 PF00448.17 gi|397780726|ref|YP_006545199.1| - 0.0061 16.0 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|397780726|ref|YP_006545199.1| - 0.013 14.9 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain YhjQ PF06564.7 gi|397780726|ref|YP_006545199.1| - 0.016 14.5 0.1 0.035 13.4 0.0 1.5 2 0 0 2 2 2 0 YhjQ protein AAA_29 PF13555.1 gi|397780726|ref|YP_006545199.1| - 0.019 14.4 0.1 0.23 11.0 0.1 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain ArgK PF03308.11 gi|397780726|ref|YP_006545199.1| - 0.02 13.6 0.1 0.033 12.9 0.1 1.3 1 0 0 1 1 1 0 ArgK protein Zn_Tnp_IS1595 PF12760.2 gi|397780726|ref|YP_006545199.1| - 0.033 13.9 0.1 0.16 11.8 0.1 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|397780726|ref|YP_006545199.1| - 0.048 13.4 0.3 0.11 12.2 0.2 1.6 1 0 0 1 1 1 0 PhnA Zinc-Ribbon AAA_19 PF13245.1 gi|397780726|ref|YP_006545199.1| - 0.05 13.3 0.7 0.48 10.2 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain MobB PF03205.9 gi|397780726|ref|YP_006545199.1| - 0.052 13.2 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|397780726|ref|YP_006545199.1| - 0.069 13.9 0.0 0.12 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|397780726|ref|YP_006545199.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|397780726|ref|YP_006545199.1| - 0.17 11.3 0.0 0.32 10.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF2274 PF10038.4 gi|397780727|ref|YP_006545200.1| - 0.0029 17.6 0.2 0.15 12.2 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2274) Gln-synt_C PF00120.19 gi|397780728|ref|YP_006545201.1| - 6.3e-97 323.7 0.0 7.8e-97 323.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|397780728|ref|YP_006545201.1| - 1.6e-29 101.2 0.0 3.2e-29 100.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Bmp PF02608.9 gi|397780728|ref|YP_006545201.1| - 0.0011 17.7 0.0 0.0018 17.1 0.0 1.2 1 0 0 1 1 1 1 Basic membrane protein GATase_2 PF00310.16 gi|397780729|ref|YP_006545202.1| - 6e-21 74.5 0.0 4.1e-19 68.5 0.0 2.0 2 0 0 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|397780729|ref|YP_006545202.1| - 6.7e-12 45.5 0.0 2.7e-11 43.5 0.0 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|397780729|ref|YP_006545202.1| - 4.6e-06 26.3 0.0 8.6e-05 22.2 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain Glu_synthase PF01645.12 gi|397780730|ref|YP_006545203.1| - 6.8e-128 426.6 0.0 6.8e-128 426.6 0.0 1.5 2 0 0 2 2 2 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|397780730|ref|YP_006545203.1| - 5e-10 38.7 6.8 5.6e-07 28.7 1.2 3.2 3 0 0 3 3 3 3 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|397780730|ref|YP_006545203.1| - 3.7e-09 35.9 0.5 1.5e-05 24.1 0.3 3.1 2 1 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain Glu_syn_central PF04898.9 gi|397780730|ref|YP_006545203.1| - 9.8e-09 34.8 0.2 0.0028 16.9 0.1 2.4 2 1 0 2 2 2 2 Glutamate synthase central domain Fer4_10 PF13237.1 gi|397780730|ref|YP_006545203.1| - 7.4e-08 32.0 17.7 5.2e-06 26.1 9.0 2.9 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397780730|ref|YP_006545203.1| - 8.8e-08 32.4 18.0 4.6e-06 26.9 7.9 2.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain NMO PF03060.10 gi|397780730|ref|YP_006545203.1| - 2.4e-07 30.2 3.2 4e-07 29.5 2.2 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_9 PF13187.1 gi|397780730|ref|YP_006545203.1| - 2.5e-07 30.8 16.4 8.9e-07 29.0 7.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397780730|ref|YP_006545203.1| - 1.4e-06 28.0 8.5 1.4e-06 28.0 5.9 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397780730|ref|YP_006545203.1| - 2.6e-06 28.0 13.8 0.00021 21.9 1.1 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|397780730|ref|YP_006545203.1| - 2.7e-06 26.7 19.3 4e-05 23.0 0.6 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397780730|ref|YP_006545203.1| - 2.9e-05 23.7 21.3 0.00021 21.0 1.3 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|397780730|ref|YP_006545203.1| - 0.00085 19.1 22.0 0.0026 17.5 1.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397780730|ref|YP_006545203.1| - 0.0024 17.8 18.7 0.034 14.1 9.2 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|397780730|ref|YP_006545203.1| - 0.0078 16.0 5.2 0.0078 16.0 3.6 2.5 2 1 1 3 3 3 1 4Fe-4S dicluster domain DHO_dh PF01180.16 gi|397780730|ref|YP_006545203.1| - 0.011 14.6 3.1 0.13 11.1 2.1 2.3 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|397780730|ref|YP_006545203.1| - 0.018 14.2 0.4 3.1 6.9 0.2 2.4 1 1 1 2 2 2 0 PcrB family Fer4_4 PF12800.2 gi|397780730|ref|YP_006545203.1| - 0.03 14.6 2.1 0.03 14.6 1.4 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|397780730|ref|YP_006545203.1| - 0.092 13.1 15.1 1.4 9.4 0.9 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397780730|ref|YP_006545203.1| - 0.22 11.8 21.9 2.1 8.7 1.9 3.5 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397780730|ref|YP_006545203.1| - 1.5 9.4 19.9 0.11 13.0 1.4 3.4 2 1 1 3 3 3 0 4Fe-4S single cluster domain GXGXG PF01493.14 gi|397780731|ref|YP_006545204.1| - 3.4e-36 124.1 12.0 4.1e-36 123.9 8.3 1.0 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.8 gi|397780732|ref|YP_006545205.1| - 1.1e-36 125.6 0.4 2.3e-36 124.6 0.0 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|397780732|ref|YP_006545205.1| - 3e-22 78.2 0.0 6.9e-22 77.1 0.0 1.7 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|397780732|ref|YP_006545205.1| - 1.7e-07 30.5 3.1 1.7e-07 30.5 2.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397780732|ref|YP_006545205.1| - 1.2e-06 28.0 18.8 1.5e-06 27.7 2.0 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397780732|ref|YP_006545205.1| - 6.4e-06 25.8 9.5 6.4e-06 25.8 6.6 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397780732|ref|YP_006545205.1| - 1.1e-05 25.6 11.8 1.1e-05 25.6 8.2 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397780732|ref|YP_006545205.1| - 2.6e-05 24.3 9.2 2.6e-05 24.3 6.4 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397780732|ref|YP_006545205.1| - 4.4e-05 23.4 19.4 0.001 19.2 1.8 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397780732|ref|YP_006545205.1| - 0.00026 20.9 8.8 0.0058 16.6 0.5 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397780732|ref|YP_006545205.1| - 0.00032 21.3 11.7 0.024 15.3 8.0 2.9 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|397780732|ref|YP_006545205.1| - 0.00041 20.1 2.5 0.00041 20.1 1.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|397780732|ref|YP_006545205.1| - 0.0042 16.9 1.9 0.0042 16.9 1.3 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|397780732|ref|YP_006545205.1| - 0.0042 17.5 18.9 0.039 14.5 6.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|397780732|ref|YP_006545205.1| - 0.016 15.6 0.9 0.016 15.6 0.6 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397780732|ref|YP_006545205.1| - 0.018 15.3 0.4 0.018 15.3 0.3 2.6 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397780732|ref|YP_006545205.1| - 0.041 14.4 1.1 0.041 14.4 0.7 3.2 4 0 0 4 4 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|397780732|ref|YP_006545205.1| - 1.8 9.0 13.2 2.7 8.4 2.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain NTP_transf_2 PF01909.18 gi|397780733|ref|YP_006545206.1| - 4.7e-15 55.6 0.3 5e-15 55.6 0.2 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain Rubredoxin PF00301.15 gi|397780735|ref|YP_006545208.1| - 2.6e-21 75.2 2.0 3.1e-21 74.9 1.4 1.1 1 0 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|397780735|ref|YP_006545208.1| - 0.019 14.5 0.5 1.7 8.2 0.1 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger DUF4379 PF14311.1 gi|397780735|ref|YP_006545208.1| - 0.043 13.6 1.4 0.59 9.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) zf-RanBP PF00641.13 gi|397780735|ref|YP_006545208.1| - 0.047 12.7 3.1 2.2 7.4 0.1 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-MIZ PF02891.15 gi|397780735|ref|YP_006545208.1| - 0.11 12.0 2.1 3 7.4 0.1 2.1 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger TPP_enzyme_N PF02776.13 gi|397780736|ref|YP_006545209.1| - 5.3e-49 166.0 2.8 5.1e-47 159.5 0.4 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|397780736|ref|YP_006545209.1| - 6.3e-40 136.2 0.6 1.4e-39 135.1 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|397780736|ref|YP_006545209.1| - 3.2e-27 94.9 0.4 7.3e-27 93.7 0.3 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain E1_dh PF00676.15 gi|397780736|ref|YP_006545209.1| - 0.077 11.6 0.1 1.1 7.9 0.0 2.1 2 0 0 2 2 2 0 Dehydrogenase E1 component CBFD_NFYB_HMF PF00808.18 gi|397780737|ref|YP_006545210.1| - 1.6e-18 66.5 0.3 1.8e-18 66.3 0.2 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|397780737|ref|YP_006545210.1| - 3.7e-12 46.2 0.1 3.8e-12 46.1 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Bromo_TP PF07524.8 gi|397780737|ref|YP_006545210.1| - 2.6e-05 23.8 0.0 2.9e-05 23.7 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-S PF15630.1 gi|397780737|ref|YP_006545210.1| - 3.4e-05 23.9 0.0 4e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TAF PF02969.12 gi|397780737|ref|YP_006545210.1| - 0.0001 22.1 0.2 0.00011 22.0 0.2 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.10 gi|397780737|ref|YP_006545210.1| - 0.00088 19.0 0.0 0.00093 18.9 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.8 gi|397780737|ref|YP_006545210.1| - 0.024 14.9 0.0 0.027 14.7 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A CENP-T PF15511.1 gi|397780737|ref|YP_006545210.1| - 0.058 12.6 0.1 0.062 12.5 0.0 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T TraC PF07820.7 gi|397780737|ref|YP_006545210.1| - 0.076 13.2 0.7 0.096 12.8 0.5 1.1 1 0 0 1 1 1 0 TraC-like protein HrcA_DNA-bdg PF03444.10 gi|397780738|ref|YP_006545211.1| - 9.4e-37 124.3 0.0 2.2e-36 123.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|397780738|ref|YP_006545211.1| - 2.7e-31 107.1 1.0 3.6e-16 58.6 0.0 2.5 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|397780738|ref|YP_006545211.1| - 6.7e-08 32.5 0.2 2.8e-07 30.5 0.0 2.1 3 0 0 3 3 3 1 Transcriptional regulator HTH_11 PF08279.7 gi|397780738|ref|YP_006545211.1| - 2.9e-07 30.0 0.0 5.7e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|397780738|ref|YP_006545211.1| - 0.0042 17.3 0.0 0.012 15.8 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|397780738|ref|YP_006545211.1| - 0.0059 16.2 0.0 0.023 14.3 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|397780738|ref|YP_006545211.1| - 0.024 13.9 0.1 0.097 12.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|397780738|ref|YP_006545211.1| - 0.035 13.7 0.0 0.18 11.5 0.0 2.2 2 0 0 2 2 2 0 MarR family Sigma70_r4_2 PF08281.7 gi|397780738|ref|YP_006545211.1| - 0.049 13.1 0.2 0.19 11.1 0.0 2.1 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|397780738|ref|YP_006545211.1| - 0.062 13.1 0.0 0.25 11.1 0.0 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain TrmB PF01978.14 gi|397780738|ref|YP_006545211.1| - 0.069 12.8 0.0 0.34 10.6 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MMR_HSR1 PF01926.18 gi|397780739|ref|YP_006545212.1| - 1.6e-19 69.9 0.0 3.3e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|397780739|ref|YP_006545212.1| - 1e-17 63.7 0.0 1.7e-17 63.0 0.0 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|397780739|ref|YP_006545212.1| - 1.2e-08 34.4 0.0 2.2e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|397780739|ref|YP_006545212.1| - 3.8e-08 33.8 0.0 7.8e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|397780739|ref|YP_006545212.1| - 6.3e-05 22.8 0.2 0.0041 16.9 0.0 2.4 1 1 1 2 2 2 1 Dynamin family ArgK PF03308.11 gi|397780739|ref|YP_006545212.1| - 0.0099 14.6 0.2 0.66 8.6 0.0 2.8 2 1 1 3 3 3 1 ArgK protein DUF1119 PF06550.6 gi|397780740|ref|YP_006545213.1| - 3.2e-85 285.6 25.8 4e-85 285.3 17.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) Peptidase_A22B PF04258.8 gi|397780740|ref|YP_006545213.1| - 4.5e-08 32.9 8.5 8.2e-08 32.0 5.9 1.6 1 1 0 1 1 1 1 Signal peptide peptidase Presenilin PF01080.12 gi|397780740|ref|YP_006545213.1| - 6.3 5.5 12.8 10 4.7 0.0 2.5 1 1 0 2 2 2 0 Presenilin IncA PF04156.9 gi|397780741|ref|YP_006545214.1| - 0.0016 18.0 0.0 0.0017 17.9 0.0 1.1 1 0 0 1 1 1 1 IncA protein DUF2884 PF11101.3 gi|397780741|ref|YP_006545214.1| - 0.017 14.5 0.1 0.018 14.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) Chordopox_L2 PF05803.7 gi|397780741|ref|YP_006545214.1| - 0.047 13.3 1.5 0.093 12.3 1.1 1.5 1 0 0 1 1 1 0 Chordopoxvirus L2 protein DUF3754 PF12576.3 gi|397780741|ref|YP_006545214.1| - 0.068 12.8 1.8 0.083 12.5 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3754) Halogen_Hydrol PF10112.4 gi|397780741|ref|YP_006545214.1| - 0.56 9.5 4.2 0.72 9.2 2.8 1.4 1 1 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein XPG_I PF00867.13 gi|397780742|ref|YP_006545215.1| - 1.2e-24 86.1 0.0 2.2e-24 85.3 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|397780742|ref|YP_006545215.1| - 2.9e-17 62.7 0.0 5e-17 62.0 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|397780742|ref|YP_006545215.1| - 0.034 14.3 0.0 0.071 13.3 0.0 1.5 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.11 gi|397780742|ref|YP_006545215.1| - 0.16 11.3 0.0 0.5 9.7 0.0 1.8 1 1 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain DUF2193 PF09959.4 gi|397780743|ref|YP_006545216.1| - 1.3e-292 970.4 4.8 1.4e-292 970.2 3.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) DUF2180 PF09947.4 gi|397780744|ref|YP_006545217.1| - 1.1e-34 117.9 3.0 1.2e-34 117.8 2.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.1 gi|397780744|ref|YP_006545217.1| - 0.04 14.3 2.3 0.13 12.7 0.1 2.2 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DZR PF12773.2 gi|397780744|ref|YP_006545217.1| - 0.29 11.0 1.6 0.97 9.3 1.1 1.9 1 1 0 1 1 1 0 Double zinc ribbon Transp_Tc5_C PF04236.10 gi|397780744|ref|YP_006545217.1| - 1.1 9.5 4.7 0.26 11.5 1.0 1.7 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain MIP PF00230.15 gi|397780745|ref|YP_006545218.1| - 4.1e-47 160.5 19.5 4.6e-47 160.3 13.5 1.0 1 0 0 1 1 1 1 Major intrinsic protein Peptidase_M50 PF02163.17 gi|397780746|ref|YP_006545219.1| - 1.2e-27 96.1 0.0 5.2e-27 94.0 0.0 2.0 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|397780746|ref|YP_006545219.1| - 1.8e-11 43.7 0.0 2.9e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|397780746|ref|YP_006545219.1| - 0.0097 16.0 0.0 0.017 15.3 0.0 1.3 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) RNase_HII PF01351.13 gi|397780747|ref|YP_006545220.1| - 7.5e-39 133.4 0.0 8.7e-39 133.2 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII TrkA_N PF02254.13 gi|590000681|ref|YP_009001416.1| - 1.3e-26 92.8 2.1 2e-26 92.2 1.5 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|590000681|ref|YP_009001416.1| - 1e-13 50.6 3.3 2.6e-13 49.3 0.6 2.6 2 1 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.12 gi|590000681|ref|YP_009001416.1| - 0.0001 22.6 2.1 0.00041 20.7 0.4 2.5 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|590000681|ref|YP_009001416.1| - 0.00012 22.3 0.5 0.00028 21.0 0.3 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|590000681|ref|YP_009001416.1| - 0.00041 20.2 0.2 0.0016 18.3 0.1 1.9 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|590000681|ref|YP_009001416.1| - 0.00074 19.5 0.3 0.0011 18.9 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding XdhC_C PF13478.1 gi|590000681|ref|YP_009001416.1| - 0.00084 19.6 0.1 0.0012 19.1 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|590000681|ref|YP_009001416.1| - 0.0013 18.4 0.1 0.0024 17.5 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|590000681|ref|YP_009001416.1| - 0.0079 15.2 0.1 0.017 14.0 0.2 1.5 2 0 0 2 2 2 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|590000681|ref|YP_009001416.1| - 0.014 14.8 0.5 0.7 9.3 0.2 2.8 2 1 1 3 3 3 0 Ketopantoate reductase PanE/ApbA ADH_zinc_N PF00107.21 gi|590000681|ref|YP_009001416.1| - 0.096 12.2 0.0 2.8 7.4 0.1 2.4 1 1 1 2 2 2 0 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.14 gi|590000681|ref|YP_009001416.1| - 0.1 11.7 0.1 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|590000681|ref|YP_009001416.1| - 0.12 12.9 0.2 0.25 11.8 0.1 1.7 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold FAD_binding_3 PF01494.14 gi|397780748|ref|YP_006545221.1| - 1.5e-11 44.0 1.0 5.1e-05 22.4 0.0 3.0 3 0 0 3 3 3 3 FAD binding domain FAD_binding_2 PF00890.19 gi|397780748|ref|YP_006545221.1| - 2.3e-11 43.1 1.9 7.2e-07 28.3 0.3 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|397780748|ref|YP_006545221.1| - 2.3e-10 40.1 6.2 8.7e-10 38.2 4.3 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|397780748|ref|YP_006545221.1| - 4.4e-10 38.9 6.1 7.2e-05 21.8 0.3 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|397780748|ref|YP_006545221.1| - 1e-08 34.5 0.1 7.7e-08 31.6 0.0 2.0 1 1 0 1 1 1 1 Lycopene cyclase protein HI0933_like PF03486.9 gi|397780748|ref|YP_006545221.1| - 3.7e-07 28.9 0.6 5.6e-07 28.3 0.4 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|397780748|ref|YP_006545221.1| - 5.3e-06 26.3 0.2 1.3e-05 25.1 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|397780748|ref|YP_006545221.1| - 8.2e-06 24.7 0.2 0.086 11.4 0.1 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|397780748|ref|YP_006545221.1| - 3.4e-05 23.8 3.0 4.8e-05 23.3 1.5 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|397780748|ref|YP_006545221.1| - 9.4e-05 21.6 0.4 0.00065 18.8 0.1 2.1 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|397780748|ref|YP_006545221.1| - 0.00016 20.6 0.1 0.00024 20.0 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|397780748|ref|YP_006545221.1| - 0.03 14.7 0.1 0.07 13.5 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|397780748|ref|YP_006545221.1| - 0.039 14.2 0.0 0.085 13.1 0.0 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding Fer4 PF00037.22 gi|397780749|ref|YP_006545222.1| - 3.9e-15 54.7 14.1 1.3e-08 34.1 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397780749|ref|YP_006545222.1| - 7.5e-11 41.4 14.2 3.6e-07 29.7 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397780749|ref|YP_006545222.1| - 4.3e-10 39.2 22.1 1.9e-08 33.9 8.2 1.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397780749|ref|YP_006545222.1| - 1.5e-09 37.2 11.3 0.00019 21.1 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|397780749|ref|YP_006545222.1| - 2.2e-09 37.0 21.9 1.8e-07 30.9 7.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397780749|ref|YP_006545222.1| - 1e-08 35.4 12.3 0.00014 22.1 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397780749|ref|YP_006545222.1| - 1.7e-08 35.0 9.4 0.00053 20.6 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|397780749|ref|YP_006545222.1| - 7.1e-08 32.5 11.5 0.00045 20.4 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397780749|ref|YP_006545222.1| - 8.9e-05 22.9 10.4 0.006 17.1 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|397780749|ref|YP_006545222.1| - 0.00018 21.4 14.7 0.0043 17.0 8.9 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|397780749|ref|YP_006545222.1| - 0.00043 20.6 15.6 0.047 14.0 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|397780749|ref|YP_006545222.1| - 0.00067 19.7 20.7 0.0044 17.2 1.6 2.8 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|397780749|ref|YP_006545222.1| - 0.00082 19.7 20.2 0.048 14.2 3.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|397780749|ref|YP_006545222.1| - 0.0044 17.3 15.8 0.062 13.6 1.9 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397780749|ref|YP_006545222.1| - 0.023 15.0 18.9 0.096 13.1 2.4 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain GF_recep_IV PF14843.1 gi|397780749|ref|YP_006545222.1| - 0.14 11.8 6.4 0.18 11.3 4.4 1.2 1 0 0 1 1 1 0 Growth factor receptor domain IV Methyltransf_18 PF12847.2 gi|397780750|ref|YP_006545223.1| - 4.6e-16 59.3 0.1 5.8e-16 59.0 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397780750|ref|YP_006545223.1| - 1.8e-13 50.3 0.0 2.2e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|397780750|ref|YP_006545223.1| - 7.5e-11 42.0 0.9 9.5e-11 41.7 0.6 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|397780750|ref|YP_006545223.1| - 2.3e-09 36.8 0.1 3.5e-09 36.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|397780750|ref|YP_006545223.1| - 2.5e-09 37.4 0.0 4e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|397780750|ref|YP_006545223.1| - 7.2e-08 32.2 0.1 1.2e-07 31.5 0.1 1.2 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|397780750|ref|YP_006545223.1| - 2.5e-07 30.1 0.2 3.8e-07 29.5 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|397780750|ref|YP_006545223.1| - 5.6e-07 29.3 0.1 6.9e-07 29.0 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.7 gi|397780750|ref|YP_006545223.1| - 1.1e-06 28.9 0.1 1.9e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|397780750|ref|YP_006545223.1| - 9.1e-06 24.8 0.0 1.3e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.15 gi|397780750|ref|YP_006545223.1| - 1.6e-05 24.1 0.0 2.1e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|397780750|ref|YP_006545223.1| - 2.3e-05 23.6 0.0 2.8e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|397780750|ref|YP_006545223.1| - 5.9e-05 22.8 0.0 6.1e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|397780750|ref|YP_006545223.1| - 9.5e-05 22.0 0.3 0.00046 19.8 0.1 1.8 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|397780750|ref|YP_006545223.1| - 0.00011 21.6 0.1 0.00017 21.0 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.7 gi|397780750|ref|YP_006545223.1| - 0.00063 20.1 0.0 0.00086 19.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain AAA_19 PF13245.1 gi|397780750|ref|YP_006545223.1| - 0.0014 18.3 2.7 0.0069 16.1 0.2 2.5 2 0 0 2 2 2 1 Part of AAA domain Methyltransf_32 PF13679.1 gi|397780750|ref|YP_006545223.1| - 0.0016 18.0 0.0 0.0022 17.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|397780750|ref|YP_006545223.1| - 0.0019 19.0 0.1 0.0025 18.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|397780750|ref|YP_006545223.1| - 0.0019 17.7 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_2 PF00891.13 gi|397780750|ref|YP_006545223.1| - 0.0048 16.1 0.1 0.0079 15.4 0.1 1.3 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.15 gi|397780750|ref|YP_006545223.1| - 0.0064 15.5 0.0 0.0088 15.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase N6_N4_Mtase PF01555.13 gi|397780750|ref|YP_006545223.1| - 0.025 14.0 0.0 0.035 13.5 0.0 1.1 1 0 0 1 1 1 0 DNA methylase DREV PF05219.7 gi|397780750|ref|YP_006545223.1| - 0.035 12.9 0.0 0.045 12.6 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase TehB PF03848.9 gi|397780750|ref|YP_006545223.1| - 0.039 13.1 0.0 0.055 12.6 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB FtsJ PF01728.14 gi|397780750|ref|YP_006545223.1| - 0.055 13.4 0.0 0.063 13.2 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_3 PF01596.12 gi|397780750|ref|YP_006545223.1| - 0.086 11.8 0.1 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase GCD14 PF08704.5 gi|397780750|ref|YP_006545223.1| - 0.13 11.7 0.0 0.18 11.3 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit TP_methylase PF00590.15 gi|397780751|ref|YP_006545224.1| - 2.4e-36 125.4 0.1 1.3e-35 123.0 0.0 1.8 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|397780752|ref|YP_006545225.1| - 4.9e-45 153.8 1.5 5.9e-45 153.5 1.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|397780752|ref|YP_006545225.1| - 0.071 13.2 0.1 0.15 12.2 0.0 1.7 1 1 0 1 1 1 0 Radical SAM superfamily CbiG_N PF11760.3 gi|397780753|ref|YP_006545226.1| - 3.5e-30 103.5 0.2 1.4e-29 101.6 0.0 2.0 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|397780753|ref|YP_006545226.1| - 1.4e-26 93.1 0.5 2.4e-26 92.3 0.3 1.4 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus MtrA PF04208.9 gi|397780753|ref|YP_006545226.1| - 0.093 12.1 0.2 0.95 8.8 0.0 2.3 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit A TP_methylase PF00590.15 gi|397780754|ref|YP_006545227.1| - 6.7e-35 120.7 0.3 7.7e-35 120.4 0.2 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.10 gi|590000682|ref|YP_009001417.1| - 3.5e-58 196.2 2.4 4.2e-58 196.0 1.7 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiD PF01888.12 gi|397780755|ref|YP_006545228.1| - 3.4e-43 147.4 0.1 4.5e-43 147.1 0.1 1.1 1 0 0 1 1 1 1 CbiD TP_methylase PF00590.15 gi|397780756|ref|YP_006545229.1| - 9e-26 90.8 6.4 2.4e-25 89.5 4.4 1.6 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_18 PF12847.2 gi|397780756|ref|YP_006545229.1| - 0.1 13.2 0.0 0.14 12.7 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|397780756|ref|YP_006545229.1| - 0.11 11.9 0.1 0.18 11.1 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|397780756|ref|YP_006545229.1| - 1.6 8.7 3.8 3.5 7.6 2.6 1.6 1 1 0 1 1 1 0 Methyltransferase domain Transglut_core PF01841.14 gi|397780758|ref|YP_006545231.1| - 6e-22 77.9 0.1 2.3e-21 76.1 0.0 2.0 2 0 0 2 2 2 1 Transglutaminase-like superfamily PEGA PF08308.6 gi|397780759|ref|YP_006545232.1| - 2.5e-10 39.9 5.5 6.4e-06 25.8 0.3 2.4 2 0 0 2 2 2 2 PEGA domain TrbC PF04956.8 gi|397780759|ref|YP_006545232.1| - 0.12 12.3 0.1 12 6.0 0.0 2.2 2 0 0 2 2 2 0 TrbC/VIRB2 family HisG_C PF08029.6 gi|397780759|ref|YP_006545232.1| - 0.15 12.0 0.0 22 5.0 0.0 2.3 2 0 0 2 2 2 0 HisG, C-terminal domain adh_short PF00106.20 gi|397780760|ref|YP_006545233.1| - 1e-32 113.3 0.1 1.3e-32 113.0 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|397780760|ref|YP_006545233.1| - 4.4e-13 49.5 0.0 5.6e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|397780760|ref|YP_006545233.1| - 1.5e-11 44.3 0.0 2.4e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|397780760|ref|YP_006545233.1| - 6.8e-07 29.4 0.1 1.6e-06 28.2 0.1 1.7 2 1 0 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|397780760|ref|YP_006545233.1| - 0.00083 18.8 0.0 0.001 18.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Saccharop_dh PF03435.13 gi|397780760|ref|YP_006545233.1| - 0.0083 15.1 0.1 0.013 14.5 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase DUF1776 PF08643.5 gi|397780760|ref|YP_006545233.1| - 0.017 14.3 0.0 4.3 6.3 0.0 2.1 2 0 0 2 2 2 0 Fungal family of unknown function (DUF1776) ADC PF06314.6 gi|397780761|ref|YP_006545234.1| - 2e-43 148.4 0.1 2.5e-43 148.1 0.0 1.1 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) DUF308 PF03729.8 gi|397780762|ref|YP_006545235.1| - 2.6e-07 30.5 2.9 2.6e-07 30.5 2.0 3.9 2 1 2 4 4 4 2 Short repeat of unknown function (DUF308) Peptidase_M50 PF02163.17 gi|397780762|ref|YP_006545235.1| - 0.43 9.5 4.5 1.1 8.1 2.2 2.1 1 1 1 2 2 2 0 Peptidase family M50 DUF1129 PF06570.6 gi|397780762|ref|YP_006545235.1| - 1.9 7.7 10.6 0.68 9.2 4.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) MscL PF01741.13 gi|397780763|ref|YP_006545236.1| - 0.062 13.4 2.3 0.14 12.2 1.6 1.6 1 1 0 1 1 1 0 Large-conductance mechanosensitive channel, MscL DUF4131 PF13567.1 gi|397780763|ref|YP_006545236.1| - 4.2 6.7 9.5 0.087 12.2 0.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) TrmB PF01978.14 gi|397780764|ref|YP_006545237.1| - 0.00059 19.4 0.1 0.00086 18.9 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|397780764|ref|YP_006545237.1| - 0.01 15.5 0.0 0.022 14.3 0.0 1.7 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|397780764|ref|YP_006545237.1| - 0.042 14.1 0.0 0.067 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|397780764|ref|YP_006545237.1| - 0.052 12.9 0.2 0.12 11.7 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|397780764|ref|YP_006545237.1| - 0.065 12.9 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain FaeA PF04703.7 gi|397780764|ref|YP_006545237.1| - 0.099 12.8 0.1 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein Rrf2 PF02082.15 gi|397780764|ref|YP_006545237.1| - 0.11 12.6 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator RuvB_C PF05491.8 gi|397780764|ref|YP_006545237.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.5 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus DUF2232 PF09991.4 gi|397780765|ref|YP_006545238.1| - 0.047 12.6 4.9 0.055 12.4 3.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) CoxIIa PF08113.6 gi|397780765|ref|YP_006545238.1| - 0.11 12.2 2.9 2.2 8.0 0.1 2.3 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IIa family Tic20 PF09685.5 gi|397780765|ref|YP_006545238.1| - 0.12 12.4 2.4 0.14 12.1 1.7 1.2 1 0 0 1 1 1 0 Tic20-like protein ABC2_membrane_4 PF12730.2 gi|397780765|ref|YP_006545238.1| - 0.15 11.2 8.1 0.16 11.0 5.6 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein ExoD PF06055.7 gi|397780765|ref|YP_006545238.1| - 0.16 11.1 3.5 0.18 10.8 2.4 1.1 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD IncA PF04156.9 gi|397780765|ref|YP_006545238.1| - 0.38 10.3 9.0 0.47 10.0 6.2 1.0 1 0 0 1 1 1 0 IncA protein DUF2628 PF10947.3 gi|397780765|ref|YP_006545238.1| - 0.41 10.4 2.8 0.51 10.1 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF4131 PF13567.1 gi|397780765|ref|YP_006545238.1| - 0.77 9.1 5.9 0.89 8.9 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2207 PF09972.4 gi|397780765|ref|YP_006545238.1| - 2.3 6.7 4.8 2.6 6.5 3.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Peptidase_M24 PF00557.19 gi|397780766|ref|YP_006545239.1| - 9.4e-40 136.3 0.1 1.5e-39 135.7 0.1 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.19 gi|397780767|ref|YP_006545240.1| - 1.6e-44 152.0 0.5 1.9e-44 151.7 0.3 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 AAA PF00004.24 gi|397780768|ref|YP_006545241.1| - 1.3e-35 122.4 0.1 7.6e-35 119.9 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|397780768|ref|YP_006545241.1| - 1.5e-05 24.5 0.3 0.0017 17.7 0.0 3.0 1 1 1 3 3 3 1 AAA domain RuvB_N PF05496.7 gi|397780768|ref|YP_006545241.1| - 4.8e-05 22.5 0.0 0.00011 21.3 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|397780768|ref|YP_006545241.1| - 0.00019 20.3 0.0 0.00044 19.0 0.0 1.5 1 1 0 1 1 1 1 TIP49 C-terminus AAA_17 PF13207.1 gi|397780768|ref|YP_006545241.1| - 0.00035 21.3 0.0 0.0015 19.3 0.0 2.2 2 1 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|397780768|ref|YP_006545241.1| - 0.00041 20.4 0.1 0.078 13.1 0.1 3.0 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|397780768|ref|YP_006545241.1| - 0.00046 19.6 0.0 0.0012 18.3 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|397780768|ref|YP_006545241.1| - 0.0005 19.8 0.1 0.0032 17.2 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|397780768|ref|YP_006545241.1| - 0.00053 20.0 0.1 0.084 12.8 0.0 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|397780768|ref|YP_006545241.1| - 0.0019 18.1 0.0 0.0041 17.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|397780768|ref|YP_006545241.1| - 0.0023 16.8 0.0 0.0055 15.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) ResIII PF04851.10 gi|397780768|ref|YP_006545241.1| - 0.0044 16.8 0.0 0.0072 16.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_18 PF13238.1 gi|397780768|ref|YP_006545241.1| - 0.0045 17.2 0.0 0.045 14.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|397780768|ref|YP_006545241.1| - 0.0046 16.6 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|397780768|ref|YP_006545241.1| - 0.0069 16.2 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|397780768|ref|YP_006545241.1| - 0.02 14.7 0.0 0.18 11.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.16 gi|397780768|ref|YP_006545241.1| - 0.043 12.9 0.0 0.093 11.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|397780768|ref|YP_006545241.1| - 0.062 13.2 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|397780768|ref|YP_006545241.1| - 0.063 12.4 0.0 0.17 11.1 0.0 1.6 1 1 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.22 gi|397780768|ref|YP_006545241.1| - 0.08 13.2 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.1 gi|397780768|ref|YP_006545241.1| - 0.092 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|397780768|ref|YP_006545241.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|397780768|ref|YP_006545241.1| - 0.13 11.3 0.0 0.28 10.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Lactamase_B_2 PF12706.2 gi|590000683|ref|YP_006545242.2| - 3.4e-23 82.2 0.5 4.5e-23 81.8 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|590000683|ref|YP_006545242.2| - 1.8e-11 44.0 0.8 2.3e-11 43.7 0.6 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|590000683|ref|YP_006545242.2| - 7.1e-09 35.5 0.0 1.6e-08 34.4 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF4044 PF13253.1 gi|397780770|ref|YP_006545243.1| - 1.6 7.9 5.9 0.11 11.6 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4044) HTH_24 PF13412.1 gi|590000684|ref|YP_006545245.2| - 5.1e-16 57.8 0.0 7e-10 38.1 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|590000684|ref|YP_006545245.2| - 6.4e-14 51.4 0.2 6.3e-07 29.1 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|590000684|ref|YP_006545245.2| - 4e-09 35.9 0.0 5e-06 26.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|590000684|ref|YP_006545245.2| - 3.1e-08 33.1 0.3 2.7e-07 30.1 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|590000684|ref|YP_006545245.2| - 9.3e-08 31.5 0.7 2.5e-05 23.7 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|590000684|ref|YP_006545245.2| - 9.5e-08 31.6 0.0 2.5e-05 23.8 0.0 2.6 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|590000684|ref|YP_006545245.2| - 2.4e-07 30.7 0.0 0.019 14.9 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain FaeA PF04703.7 gi|590000684|ref|YP_006545245.2| - 1.2e-05 25.3 0.0 0.12 12.5 0.0 2.3 2 0 0 2 2 2 2 FaeA-like protein HTH_29 PF13551.1 gi|590000684|ref|YP_006545245.2| - 6e-05 23.1 1.6 0.00062 19.9 0.0 2.3 1 1 1 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|590000684|ref|YP_006545245.2| - 0.00041 19.8 0.0 0.00092 18.7 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|590000684|ref|YP_006545245.2| - 0.0012 18.6 0.0 0.0024 17.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|590000684|ref|YP_006545245.2| - 0.0016 17.9 0.0 0.0031 17.0 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|590000684|ref|YP_006545245.2| - 0.0019 18.0 0.0 0.0034 17.2 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|590000684|ref|YP_006545245.2| - 0.0022 17.9 0.1 0.0063 16.4 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|590000684|ref|YP_006545245.2| - 0.0049 16.4 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|590000684|ref|YP_006545245.2| - 0.011 15.4 0.0 0.031 13.9 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_10 PF04967.7 gi|590000684|ref|YP_006545245.2| - 0.016 14.7 0.0 0.038 13.5 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain GntR PF00392.16 gi|590000684|ref|YP_006545245.2| - 0.017 14.5 0.2 0.65 9.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family RPA_C PF08784.6 gi|590000684|ref|YP_006545245.2| - 0.034 14.5 0.0 0.6 10.5 0.0 2.1 2 0 0 2 2 2 0 Replication protein A C terminal GerE PF00196.14 gi|590000684|ref|YP_006545245.2| - 0.036 13.3 0.0 0.062 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family KorB PF08535.5 gi|590000684|ref|YP_006545245.2| - 0.057 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 KorB domain HTH_1 PF00126.22 gi|590000684|ref|YP_006545245.2| - 0.058 13.1 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.15 gi|590000684|ref|YP_006545245.2| - 0.064 13.3 0.0 0.19 11.9 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator FeoC PF09012.5 gi|590000684|ref|YP_006545245.2| - 0.064 12.9 0.0 10 5.9 0.0 2.2 2 0 0 2 2 2 0 FeoC like transcriptional regulator Sigma70_r4 PF04545.11 gi|590000684|ref|YP_006545245.2| - 0.1 11.9 0.1 0.34 10.2 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 Sperm_Ag_HE2 PF05324.8 gi|590000684|ref|YP_006545245.2| - 0.17 11.8 1.8 0.29 11.0 0.0 2.3 2 1 1 3 3 3 0 Sperm antigen HE2 PPC PF04151.10 gi|397780773|ref|YP_006545246.1| - 8.2e-05 23.4 0.1 0.00013 22.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial pre-peptidase C-terminal domain YadA_stalk PF05662.9 gi|397780773|ref|YP_006545246.1| - 0.0025 17.5 1.1 1.7 8.5 0.1 2.6 2 0 0 2 2 2 2 Coiled stalk of trimeric autotransporter adhesin Clc-like PF07062.7 gi|397780774|ref|YP_006545247.1| - 0.082 12.1 0.7 0.12 11.5 0.1 1.5 2 0 0 2 2 2 0 Clc-like ABC2_membrane_2 PF12679.2 gi|397780775|ref|YP_006545248.1| - 9.9e-43 145.9 11.4 1.3e-42 145.6 7.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|397780775|ref|YP_006545248.1| - 1.4e-13 50.5 7.3 1.4e-13 50.5 5.0 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|397780775|ref|YP_006545248.1| - 0.00073 18.6 7.9 0.00073 18.6 5.5 2.1 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|397780775|ref|YP_006545248.1| - 0.00075 18.8 5.2 0.00075 18.8 3.6 2.2 3 0 0 3 3 3 1 ABC-2 family transporter protein Fig1 PF12351.3 gi|397780775|ref|YP_006545248.1| - 0.4 10.5 9.1 0.47 10.3 2.3 2.9 2 1 1 3 3 3 0 Ca2+ regulator and membrane fusion protein Fig1 ABC2_membrane PF01061.19 gi|397780775|ref|YP_006545248.1| - 8.9 5.4 19.9 1.7 7.7 10.3 2.1 2 1 0 2 2 2 0 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|397780776|ref|YP_006545249.1| - 5.7e-44 150.0 5.1 6.8e-44 149.7 3.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|397780776|ref|YP_006545249.1| - 4.3e-18 65.3 4.4 4.3e-18 65.3 3.0 1.4 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|397780776|ref|YP_006545249.1| - 1e-06 28.0 7.8 1e-06 28.0 5.4 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|397780776|ref|YP_006545249.1| - 4.8e-05 22.7 3.4 9e-05 21.8 1.1 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein Hormone_3 PF00159.13 gi|397780776|ref|YP_006545249.1| - 0.075 13.0 3.4 0.26 11.3 1.8 2.1 2 0 0 2 2 2 0 Pancreatic hormone peptide DUF4044 PF13253.1 gi|397780776|ref|YP_006545249.1| - 0.15 11.1 2.0 0.72 9.0 1.4 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) PQQ_2 PF13360.1 gi|590000685|ref|YP_009001418.1| - 2.2e-07 30.6 0.6 0.00083 18.8 0.0 3.1 1 1 2 3 3 3 2 PQQ-like domain DUF2064 PF09837.4 gi|590000685|ref|YP_009001418.1| - 0.31 10.6 2.1 12 5.5 0.0 3.3 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2064) Peptidase_M28 PF04389.12 gi|397780779|ref|YP_006545252.1| - 6.2e-28 97.7 0.0 4.7e-27 94.8 0.0 2.3 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M20 PF01546.23 gi|397780779|ref|YP_006545252.1| - 3.4e-07 29.9 0.1 7.7e-07 28.8 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|397780779|ref|YP_006545252.1| - 5.6e-06 25.3 0.3 1.1e-05 24.3 0.0 1.5 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase Big_3_4 PF13754.1 gi|397780779|ref|YP_006545252.1| - 0.00054 20.2 0.1 0.0025 18.1 0.0 2.1 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 3) Nicastrin PF05450.10 gi|397780779|ref|YP_006545252.1| - 0.016 14.4 0.0 0.031 13.4 0.0 1.4 1 0 0 1 1 1 0 Nicastrin Big_3_2 PF12245.3 gi|397780779|ref|YP_006545252.1| - 0.079 12.5 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) ABC2_membrane_2 PF12679.2 gi|397780780|ref|YP_006545253.1| - 7.2e-50 169.3 1.3 8.7e-50 169.1 0.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|397780780|ref|YP_006545253.1| - 3.8e-16 58.9 6.7 3.8e-16 58.9 4.6 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|397780780|ref|YP_006545253.1| - 2.4e-09 36.6 7.7 2.4e-09 36.6 5.3 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|397780780|ref|YP_006545253.1| - 5.2e-05 22.6 8.9 5.2e-05 22.6 4.4 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|397780780|ref|YP_006545253.1| - 2.9 7.0 15.5 1.2 8.2 8.1 2.2 2 1 0 2 2 2 0 ABC-2 type transporter DUF2118 PF09891.4 gi|397780783|ref|YP_006545256.1| - 0.11 12.2 0.1 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) HTH_24 PF13412.1 gi|397780784|ref|YP_006545257.1| - 4.5e-28 96.3 0.2 2.6e-14 52.3 0.1 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|397780784|ref|YP_006545257.1| - 4.1e-20 71.3 0.3 1.4e-09 37.6 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|397780784|ref|YP_006545257.1| - 1.4e-17 63.0 0.0 2.6e-08 33.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|397780784|ref|YP_006545257.1| - 2.2e-17 62.4 2.8 8.3e-08 31.7 0.2 2.6 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.5 gi|397780784|ref|YP_006545257.1| - 5.4e-13 48.2 0.1 7.3e-06 25.4 0.0 2.5 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|397780784|ref|YP_006545257.1| - 3e-12 46.6 0.3 3e-06 27.4 0.2 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain MarR PF01047.17 gi|397780784|ref|YP_006545257.1| - 3e-12 46.0 0.0 8.4e-05 22.2 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_23 PF13384.1 gi|397780784|ref|YP_006545257.1| - 8.9e-12 44.2 0.4 0.00011 21.7 0.0 2.8 3 0 0 3 3 3 2 Homeodomain-like domain HTH_11 PF08279.7 gi|397780784|ref|YP_006545257.1| - 3.6e-11 42.5 0.1 2.2e-05 23.9 0.0 2.4 2 0 0 2 2 2 2 HTH domain TrmB PF01978.14 gi|397780784|ref|YP_006545257.1| - 2e-10 40.2 0.0 0.00055 19.5 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|397780784|ref|YP_006545257.1| - 4e-09 36.4 0.0 0.00078 19.5 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator PaaX PF07848.7 gi|397780784|ref|YP_006545257.1| - 5.2e-08 32.7 0.5 0.00073 19.4 0.0 2.3 2 0 0 2 2 2 2 PaaX-like protein HTH_AsnC-type PF13404.1 gi|397780784|ref|YP_006545257.1| - 6.3e-08 32.0 0.9 0.00019 20.9 0.2 2.6 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_29 PF13551.1 gi|397780784|ref|YP_006545257.1| - 8e-08 32.4 0.5 0.003 17.6 0.1 2.3 1 1 1 2 2 2 2 Winged helix-turn helix FaeA PF04703.7 gi|397780784|ref|YP_006545257.1| - 1.6e-07 31.3 0.0 0.025 14.7 0.0 2.3 2 0 0 2 2 2 2 FaeA-like protein HTH_Crp_2 PF13545.1 gi|397780784|ref|YP_006545257.1| - 1e-06 28.4 0.1 0.019 14.7 0.0 2.3 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|397780784|ref|YP_006545257.1| - 6.5e-06 26.0 0.4 0.12 12.3 0.1 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain DUF387 PF04079.11 gi|397780784|ref|YP_006545257.1| - 1.2e-05 24.7 0.0 0.01 15.1 0.0 2.1 2 0 0 2 2 2 2 Putative transcriptional regulators (Ypuh-like) Sigma70_r4_2 PF08281.7 gi|397780784|ref|YP_006545257.1| - 1.3e-05 24.5 0.0 0.025 14.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_34 PF13601.1 gi|397780784|ref|YP_006545257.1| - 3e-05 23.9 0.0 0.018 15.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_CodY PF08222.6 gi|397780784|ref|YP_006545257.1| - 4.2e-05 22.8 0.1 0.00061 19.0 0.0 2.2 2 0 0 2 2 2 1 CodY helix-turn-helix domain GntR PF00392.16 gi|397780784|ref|YP_006545257.1| - 5.1e-05 22.6 0.1 0.21 11.0 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family Sigma70_r4 PF04545.11 gi|397780784|ref|YP_006545257.1| - 8.4e-05 21.7 0.0 0.047 13.0 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_10 PF04967.7 gi|397780784|ref|YP_006545257.1| - 0.00011 21.7 0.0 0.28 10.7 0.0 2.6 2 0 0 2 2 2 2 HTH DNA binding domain Fe_dep_repress PF01325.14 gi|397780784|ref|YP_006545257.1| - 0.00012 21.9 0.0 0.33 10.9 0.0 2.2 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.11 gi|397780784|ref|YP_006545257.1| - 0.00012 21.5 0.0 0.18 11.4 0.0 2.5 2 0 0 2 2 2 1 LexA DNA binding domain TFIIE_alpha PF02002.12 gi|397780784|ref|YP_006545257.1| - 0.00044 19.7 0.0 0.13 11.8 0.0 2.2 1 1 1 2 2 2 1 TFIIE alpha subunit HTH_26 PF13443.1 gi|397780784|ref|YP_006545257.1| - 0.00057 20.0 0.0 0.63 10.2 0.0 2.3 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_39 PF14090.1 gi|397780784|ref|YP_006545257.1| - 0.001 18.4 0.3 0.89 9.0 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|397780784|ref|YP_006545257.1| - 0.0012 18.3 0.6 0.32 10.5 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|397780784|ref|YP_006545257.1| - 0.0012 18.6 0.0 0.19 11.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_12 PF08461.5 gi|397780784|ref|YP_006545257.1| - 0.0034 17.0 1.6 4.9 6.9 0.0 3.3 2 1 1 3 3 3 0 Ribonuclease R winged-helix domain EAP30 PF04157.11 gi|397780784|ref|YP_006545257.1| - 0.0037 16.4 0.0 1.2 8.2 0.0 2.1 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_Tnp_Tc3_2 PF01498.13 gi|397780784|ref|YP_006545257.1| - 0.007 16.3 0.2 0.18 11.8 0.1 2.3 2 0 0 2 2 2 1 Transposase HrcA_DNA-bdg PF03444.10 gi|397780784|ref|YP_006545257.1| - 0.0091 15.4 0.0 0.035 13.5 0.0 2.0 1 1 1 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_45 PF14947.1 gi|397780784|ref|YP_006545257.1| - 0.0098 15.6 0.0 3.6 7.4 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DUF2250 PF10007.4 gi|397780784|ref|YP_006545257.1| - 0.01 15.6 0.0 2.9 7.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_32 PF13565.1 gi|397780784|ref|YP_006545257.1| - 0.015 16.1 0.2 3.8 8.3 0.0 2.7 1 1 1 2 2 2 0 Homeodomain-like domain DUF3489 PF11994.3 gi|397780784|ref|YP_006545257.1| - 0.019 14.9 0.0 0.25 11.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3489) HTH_36 PF13730.1 gi|397780784|ref|YP_006545257.1| - 0.02 15.0 0.0 2 8.6 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Mrr_N PF14338.1 gi|397780784|ref|YP_006545257.1| - 0.026 14.6 0.0 0.11 12.5 0.0 1.9 2 0 0 2 2 2 0 Mrr N-terminal domain GerE PF00196.14 gi|397780784|ref|YP_006545257.1| - 0.026 13.8 0.0 8.9 5.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family LZ_Tnp_IS481 PF13011.1 gi|397780784|ref|YP_006545257.1| - 0.027 14.7 0.1 6.2 7.2 0.1 2.3 2 0 0 2 2 2 0 leucine-zipper of insertion element IS481 Rio2_N PF09202.6 gi|397780784|ref|YP_006545257.1| - 0.03 14.3 0.0 0.2 11.7 0.0 2.0 2 0 0 2 2 2 0 Rio2, N-terminal DUF3253 PF11625.3 gi|397780784|ref|YP_006545257.1| - 0.032 14.1 0.0 0.085 12.7 0.0 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF3253) B-block_TFIIIC PF04182.7 gi|397780784|ref|YP_006545257.1| - 0.04 13.7 0.0 9.9 6.0 0.0 2.3 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Sulfolobus_pRN PF05584.6 gi|397780784|ref|YP_006545257.1| - 0.047 13.6 0.0 12 5.9 0.0 2.3 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein HTH_7 PF02796.10 gi|397780784|ref|YP_006545257.1| - 0.047 13.5 0.1 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase PadR PF03551.9 gi|397780784|ref|YP_006545257.1| - 0.055 13.2 0.1 7.2 6.4 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family Penicillinase_R PF03965.11 gi|397780784|ref|YP_006545257.1| - 0.057 13.5 0.0 5.8 7.0 0.0 2.3 1 1 1 2 2 2 0 Penicillinase repressor TetR_N PF00440.18 gi|397780784|ref|YP_006545257.1| - 0.071 12.7 0.5 13 5.4 0.0 3.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family HTH_40 PF14493.1 gi|397780784|ref|YP_006545257.1| - 0.075 13.2 0.0 3.4 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain RP-C PF03428.8 gi|397780784|ref|YP_006545257.1| - 0.093 12.1 0.3 1.1 8.7 0.1 2.0 2 0 0 2 2 2 0 Replication protein C N-terminal domain Ribosomal_S19e PF01090.14 gi|397780784|ref|YP_006545257.1| - 0.093 12.1 0.0 6.6 6.1 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S19e DUF2513 PF10711.4 gi|397780784|ref|YP_006545257.1| - 0.11 12.5 0.0 3 7.9 0.0 2.2 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) DUF977 PF06163.6 gi|397780784|ref|YP_006545257.1| - 0.13 12.0 0.1 2.2 8.0 0.0 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF977) HTH_Mga PF08280.6 gi|397780784|ref|YP_006545257.1| - 0.13 11.9 0.0 0.43 10.3 0.0 1.7 2 0 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_37 PF13744.1 gi|397780784|ref|YP_006545257.1| - 0.14 11.9 0.0 10 6.0 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain IF-2B PF01008.12 gi|397780785|ref|YP_006545258.1| - 2.4e-88 295.7 0.5 2.8e-88 295.5 0.3 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family PIN PF01850.16 gi|397780785|ref|YP_006545258.1| - 0.054 13.8 2.1 1.4 9.2 0.1 2.3 2 0 0 2 2 2 0 PIN domain Hydrolase PF00702.21 gi|397780786|ref|YP_006545259.1| - 3e-15 57.2 0.1 6e-15 56.2 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|397780786|ref|YP_006545259.1| - 2.3e-10 40.9 0.0 3.3e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|397780786|ref|YP_006545259.1| - 1.5e-05 25.3 0.0 0.00015 22.0 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|397780786|ref|YP_006545259.1| - 0.0018 17.8 0.0 0.11 12.0 0.0 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|397780786|ref|YP_006545259.1| - 0.024 14.5 0.0 0.27 11.1 0.0 2.6 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|397780786|ref|YP_006545259.1| - 0.077 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like ABC_tran PF00005.22 gi|397780787|ref|YP_006545260.1| - 1.4e-50 171.1 0.0 7.7e-27 94.2 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|397780787|ref|YP_006545260.1| - 1.4e-08 35.0 0.3 0.083 12.8 0.2 4.1 3 1 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|397780787|ref|YP_006545260.1| - 8e-06 25.2 0.3 0.04 13.4 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.14 gi|397780787|ref|YP_006545260.1| - 1e-05 24.9 2.8 0.089 12.0 0.0 3.7 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|397780787|ref|YP_006545260.1| - 4.7e-05 22.6 0.3 0.28 10.3 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|397780787|ref|YP_006545260.1| - 8.2e-05 23.4 1.3 0.021 15.6 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|397780787|ref|YP_006545260.1| - 9e-05 22.5 0.9 0.57 10.1 0.0 3.2 3 1 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|397780787|ref|YP_006545260.1| - 9.3e-05 22.8 0.4 0.013 15.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|397780787|ref|YP_006545260.1| - 0.00026 20.5 0.1 0.014 14.9 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain PhoH PF02562.11 gi|397780787|ref|YP_006545260.1| - 0.0015 17.7 0.0 0.35 10.0 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein SbcCD_C PF13558.1 gi|397780787|ref|YP_006545260.1| - 0.0018 18.1 0.0 3.8 7.4 0.0 3.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|397780787|ref|YP_006545260.1| - 0.0021 18.2 0.2 1.9 8.6 0.0 2.7 2 0 0 2 2 2 1 AAA domain PRK PF00485.13 gi|397780787|ref|YP_006545260.1| - 0.0023 17.5 0.4 0.29 10.6 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family PduV-EutP PF10662.4 gi|397780787|ref|YP_006545260.1| - 0.0023 17.4 0.1 0.78 9.2 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.17 gi|397780787|ref|YP_006545260.1| - 0.0028 16.5 1.8 1.6 7.5 0.1 2.8 3 0 0 3 3 3 2 NB-ARC domain AAA_10 PF12846.2 gi|397780787|ref|YP_006545260.1| - 0.0036 16.8 2.2 4.7 6.5 0.0 3.3 3 0 0 3 3 3 0 AAA-like domain DUF87 PF01935.12 gi|397780787|ref|YP_006545260.1| - 0.0048 16.7 1.6 0.66 9.7 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function DUF87 MobB PF03205.9 gi|397780787|ref|YP_006545260.1| - 0.0057 16.3 0.4 0.48 10.1 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|397780787|ref|YP_006545260.1| - 0.011 15.2 0.0 5.6 6.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|397780787|ref|YP_006545260.1| - 0.017 14.7 0.1 3.2 7.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 IstB_IS21 PF01695.12 gi|397780787|ref|YP_006545260.1| - 0.018 14.4 0.4 3.1 7.1 0.0 3.1 3 1 0 3 3 3 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|397780787|ref|YP_006545260.1| - 0.021 14.5 0.1 3.5 7.4 0.0 2.8 2 0 0 2 2 2 0 Part of AAA domain AAA_18 PF13238.1 gi|397780787|ref|YP_006545260.1| - 0.022 15.0 1.8 0.23 11.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain zf-IS66 PF13005.2 gi|397780787|ref|YP_006545260.1| - 0.022 14.7 0.3 0.084 12.8 0.0 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 NACHT PF05729.7 gi|397780787|ref|YP_006545260.1| - 0.026 14.1 0.9 5.5 6.6 0.0 2.4 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|397780787|ref|YP_006545260.1| - 0.031 14.2 1.0 5.8 6.9 0.2 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase Miro PF08477.8 gi|397780787|ref|YP_006545260.1| - 0.037 14.5 0.8 16 6.0 0.1 2.8 3 0 0 3 3 2 0 Miro-like protein AAA_25 PF13481.1 gi|397780787|ref|YP_006545260.1| - 0.037 13.4 0.1 14 5.0 0.0 3.2 3 0 0 3 3 3 0 AAA domain AAA_13 PF13166.1 gi|397780787|ref|YP_006545260.1| - 0.069 11.6 0.1 0.62 8.4 0.0 2.3 3 0 0 3 3 3 0 AAA domain Mg_chelatase PF01078.16 gi|397780787|ref|YP_006545260.1| - 0.1 11.7 0.0 2.9 6.9 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|397780787|ref|YP_006545260.1| - 0.11 11.9 0.3 17 4.8 0.0 2.6 2 1 1 3 3 3 0 FtsK/SpoIIIE family AAA_24 PF13479.1 gi|397780787|ref|YP_006545260.1| - 0.72 9.4 3.5 8.5 5.8 0.1 2.6 3 0 0 3 3 2 0 AAA domain Pro_isomerase PF00160.16 gi|397780788|ref|YP_006545261.1| - 0.028 14.6 0.0 3.6 7.7 0.0 3.1 3 0 0 3 3 3 0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF2102 PF09875.4 gi|397780789|ref|YP_006545262.1| - 2.4e-39 133.0 0.0 3e-39 132.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) DUF2112 PF09885.4 gi|397780790|ref|YP_006545263.1| - 8.4e-64 213.5 0.0 9.5e-64 213.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) BcrAD_BadFG PF01869.15 gi|397780791|ref|YP_006545264.1| - 6.4e-60 202.7 5.9 8.5e-60 202.3 4.1 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.1 gi|397780791|ref|YP_006545264.1| - 0.18 11.6 2.1 2.1 8.2 1.5 2.8 1 1 0 1 1 1 0 Cell division protein FtsA DUF2113 PF09886.4 gi|397780792|ref|YP_006545265.1| - 3.2e-66 222.1 0.1 3.5e-66 221.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) Bac_luciferase PF00296.15 gi|397780792|ref|YP_006545265.1| - 0.023 13.8 0.0 0.027 13.5 0.0 1.2 1 0 0 1 1 1 0 Luciferase-like monooxygenase MmlI PF09448.5 gi|397780792|ref|YP_006545265.1| - 0.12 12.0 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Methylmuconolactone methyl-isomerase MCR_C PF04609.7 gi|397780793|ref|YP_006545266.1| - 2e-113 377.6 0.2 2.3e-113 377.4 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C CMD PF02627.15 gi|397780794|ref|YP_006545267.1| - 1.3e-15 57.0 0.9 1.6e-15 56.6 0.6 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Asn_synthase PF00733.16 gi|397780795|ref|YP_006545268.1| - 1.3e-53 182.1 0.5 2.8e-53 181.0 0.4 1.5 1 1 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|397780795|ref|YP_006545268.1| - 1.1e-51 173.7 0.0 1.9e-51 172.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|397780795|ref|YP_006545268.1| - 8.9e-48 161.6 0.0 1.6e-47 160.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|397780795|ref|YP_006545268.1| - 2.5e-05 23.1 0.1 0.23 10.0 0.0 2.9 1 1 2 3 3 3 2 Glutamine amidotransferases class-II DUF3700 PF12481.3 gi|397780795|ref|YP_006545268.1| - 0.0027 16.9 0.0 0.0051 16.0 0.0 1.4 1 0 0 1 1 1 1 Aluminium induced protein NAD_synthase PF02540.12 gi|397780795|ref|YP_006545268.1| - 0.059 12.2 0.0 0.084 11.7 0.0 1.2 1 0 0 1 1 1 0 NAD synthase DUF1614 PF07758.6 gi|397780796|ref|YP_006545269.1| - 8.7e-41 139.5 22.2 8.7e-41 139.5 15.4 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1614) TcpE PF12648.2 gi|397780796|ref|YP_006545269.1| - 3.4 7.8 11.1 1 9.5 2.1 2.5 1 1 0 2 2 2 0 TcpE family ABC_tran PF00005.22 gi|397780797|ref|YP_006545270.1| - 1.3e-09 38.4 0.0 1.9e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780797|ref|YP_006545270.1| - 0.049 13.6 0.0 0.061 13.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain Rhodanese PF00581.15 gi|397780798|ref|YP_006545271.1| - 2.9e-20 72.7 0.0 3.7e-20 72.3 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain Cpn60_TCP1 PF00118.19 gi|397780799|ref|YP_006545272.1| - 2.7e-123 412.1 9.9 3.1e-123 411.9 6.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Cpn10 PF00166.16 gi|397780800|ref|YP_006545273.1| - 3.9e-24 84.4 0.3 4.3e-24 84.2 0.2 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit HTH_20 PF12840.2 gi|397780801|ref|YP_006545274.1| - 8.7e-08 31.8 0.7 1.8e-06 27.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|397780801|ref|YP_006545274.1| - 3.7e-06 26.5 0.0 6e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RPA_C PF08784.6 gi|397780801|ref|YP_006545274.1| - 7.8e-06 26.2 0.0 1.1e-05 25.7 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal TrmB PF01978.14 gi|397780801|ref|YP_006545274.1| - 9.3e-06 25.2 0.2 2e-05 24.1 0.0 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|397780801|ref|YP_006545274.1| - 2.8e-05 23.6 0.6 5.6e-05 22.7 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|397780801|ref|YP_006545274.1| - 3.8e-05 22.9 0.0 6.2e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|397780801|ref|YP_006545274.1| - 0.00071 19.3 0.0 0.0015 18.2 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GerE PF00196.14 gi|397780801|ref|YP_006545274.1| - 0.00082 18.6 0.0 0.0016 17.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Rrf2 PF02082.15 gi|397780801|ref|YP_006545274.1| - 0.0012 18.8 0.0 0.0026 17.8 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.16 gi|397780801|ref|YP_006545274.1| - 0.0019 17.5 0.1 0.0039 16.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF4423 PF14394.1 gi|397780801|ref|YP_006545274.1| - 0.0051 16.3 0.0 0.0062 16.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR PF01047.17 gi|397780801|ref|YP_006545274.1| - 0.006 16.2 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|397780801|ref|YP_006545274.1| - 0.015 14.7 0.0 0.04 13.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.7 gi|397780801|ref|YP_006545274.1| - 0.02 14.5 2.1 0.023 14.3 0.0 2.2 3 0 0 3 3 2 0 HTH domain HTH_36 PF13730.1 gi|397780801|ref|YP_006545274.1| - 0.022 14.8 0.0 0.038 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|397780801|ref|YP_006545274.1| - 0.026 14.1 0.5 0.059 12.9 0.0 1.9 2 1 0 2 2 2 0 IclR helix-turn-helix domain EAP30 PF04157.11 gi|397780801|ref|YP_006545274.1| - 0.041 13.0 0.0 0.061 12.4 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_23 PF13384.1 gi|397780801|ref|YP_006545274.1| - 0.1 12.2 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain RDD PF06271.7 gi|397780802|ref|YP_006545275.1| - 7.7e-17 61.4 1.2 9.5e-17 61.1 0.8 1.1 1 0 0 1 1 1 1 RDD family Aldo_ket_red PF00248.16 gi|397780803|ref|YP_006545276.1| - 9.3e-30 103.4 0.0 1.7e-28 99.2 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family MFS_1 PF07690.11 gi|397780804|ref|YP_006545277.1| - 1.8e-57 194.6 57.8 8.1e-36 123.4 16.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|397780804|ref|YP_006545277.1| - 3.3e-11 42.2 28.6 1.8e-08 33.2 6.5 2.6 2 1 0 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|397780804|ref|YP_006545277.1| - 1.7e-05 23.5 33.1 0.0017 17.0 9.8 3.1 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|397780804|ref|YP_006545277.1| - 0.00011 21.9 7.0 0.00096 18.8 0.2 3.1 3 0 0 3 3 3 2 MFS_1 like family MFS_3 PF05977.8 gi|397780804|ref|YP_006545277.1| - 0.00014 20.1 27.5 0.00064 17.9 19.1 1.9 1 1 0 1 1 1 1 Transmembrane secretion effector Folate_carrier PF01770.13 gi|397780804|ref|YP_006545277.1| - 0.00018 20.1 0.8 0.00018 20.1 0.6 2.0 2 1 0 2 2 2 1 Reduced folate carrier LacY_symp PF01306.14 gi|397780804|ref|YP_006545277.1| - 0.0004 19.0 21.1 0.031 12.8 2.1 2.9 2 1 0 2 2 2 2 LacY proton/sugar symporter OATP PF03137.15 gi|397780804|ref|YP_006545277.1| - 2.3 6.1 13.9 0.8 7.6 0.5 3.2 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Abi PF02517.11 gi|397780805|ref|YP_006545278.1| - 1.3e-11 44.4 2.2 1.3e-11 44.4 1.5 3.9 1 1 1 2 2 2 1 CAAX protease self-immunity DUF3094 PF11293.3 gi|397780805|ref|YP_006545278.1| - 0.072 12.5 0.2 0.41 10.1 0.1 2.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3094) DUF4065 PF13274.1 gi|397780807|ref|YP_006545280.1| - 2.5e-08 34.5 0.0 4.5e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4065) TruB_N PF01509.13 gi|397780808|ref|YP_006545281.1| - 2.1e-24 86.3 0.1 2e-13 50.7 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|397780808|ref|YP_006545281.1| - 1.4e-15 56.8 1.0 3.3e-15 55.5 0.7 1.7 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.7 gi|397780808|ref|YP_006545281.1| - 1.4e-05 24.9 0.2 2.5e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain HEM4 PF02602.10 gi|397780809|ref|YP_006545282.1| - 2e-23 82.8 0.0 2.5e-23 82.5 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TctA PF01970.11 gi|397780810|ref|YP_006545283.1| - 7.7e-56 189.2 48.3 9.7e-56 188.9 33.5 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Nop PF01798.13 gi|397780811|ref|YP_006545284.1| - 1e-42 144.9 0.1 1.6e-42 144.3 0.1 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|397780811|ref|YP_006545284.1| - 0.00022 20.9 0.0 0.00048 19.8 0.0 1.6 1 0 0 1 1 1 1 NOSIC (NUC001) domain Fibrillarin PF01269.12 gi|397780812|ref|YP_006545285.1| - 5.5e-61 205.3 0.0 6.6e-61 205.1 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.7 gi|397780812|ref|YP_006545285.1| - 0.011 14.6 0.0 0.014 14.2 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase FtsJ PF01728.14 gi|397780812|ref|YP_006545285.1| - 0.027 14.4 0.0 0.035 14.0 0.0 1.1 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_23 PF13489.1 gi|397780812|ref|YP_006545285.1| - 0.041 13.6 0.0 0.6 9.8 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain HTH_33 PF13592.1 gi|397780812|ref|YP_006545285.1| - 0.055 13.0 0.0 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix Methyltransf_26 PF13659.1 gi|397780812|ref|YP_006545285.1| - 0.07 13.1 0.2 0.18 11.8 0.1 1.8 1 1 0 1 1 1 0 Methyltransferase domain Pea-VEAacid PF08111.6 gi|397780812|ref|YP_006545285.1| - 1.2 9.3 5.6 18 5.6 0.0 3.1 3 0 0 3 3 3 0 Pea-VEAacid family DUF1614 PF07758.6 gi|397780813|ref|YP_006545286.1| - 2.6e-55 186.8 13.2 3.5e-55 186.4 9.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) FUSC-like PF12805.2 gi|397780813|ref|YP_006545286.1| - 9.6 5.0 7.1 20 4.0 4.9 1.4 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS Plasmid_stabil PF05016.9 gi|397780814|ref|YP_006545287.1| - 2.8e-09 37.2 0.0 3.1e-09 37.1 0.0 1.0 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|397780814|ref|YP_006545287.1| - 0.00023 21.0 0.0 0.00026 20.9 0.0 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) Plasmid_killer PF05015.8 gi|397780814|ref|YP_006545287.1| - 0.0023 18.0 0.0 0.0049 16.9 0.0 1.6 1 1 0 1 1 1 1 Plasmid maintenance system killer protein RHH_1 PF01402.16 gi|397780815|ref|YP_006545288.1| - 1.7 8.6 5.9 5.5 7.0 0.1 3.1 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family AP_endonuc_2 PF01261.19 gi|397780816|ref|YP_006545289.1| - 4.4e-13 49.0 0.3 5.8e-13 48.6 0.2 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel SnoaL_2 PF12680.2 gi|397780816|ref|YP_006545289.1| - 0.045 14.1 0.3 0.19 12.1 0.1 2.1 2 1 0 2 2 2 0 SnoaL-like domain AP_endonuc_2 PF01261.19 gi|397780817|ref|YP_006545290.1| - 4.2e-09 36.0 1.0 6.5e-09 35.3 0.7 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Thymidylat_synt PF00303.14 gi|397780818|ref|YP_006545291.1| - 8e-33 113.5 0.0 1.2e-31 109.7 0.0 1.9 1 1 0 1 1 1 1 Thymidylate synthase HSP20 PF00011.16 gi|397780819|ref|YP_006545292.1| - 0.076 12.8 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 Hsp20/alpha crystallin family HATPase_c_4 PF13749.1 gi|397780821|ref|YP_006545294.1| - 5.2e-17 61.4 0.0 9.4e-17 60.5 0.0 1.4 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|397780821|ref|YP_006545294.1| - 1.3e-14 54.3 0.0 2.4e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Divergent AAA domain HATPase_c_2 PF13581.1 gi|397780821|ref|YP_006545294.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain INTS2 PF14750.1 gi|397780821|ref|YP_006545294.1| - 0.37 8.2 0.0 0.48 7.8 0.0 1.0 1 0 0 1 1 1 0 Integrator complex subunit 2 OrfB_IS605 PF01385.14 gi|397780823|ref|YP_006545296.1| - 4.7e-46 157.0 0.1 6.2e-46 156.6 0.1 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|397780823|ref|YP_006545296.1| - 7.2e-23 80.0 0.1 1.5e-22 78.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|397780823|ref|YP_006545296.1| - 7.1e-22 76.4 1.6 1.5e-21 75.4 1.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|397780823|ref|YP_006545296.1| - 0.0081 15.3 0.4 1.2 8.4 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|397780823|ref|YP_006545296.1| - 0.0096 15.6 0.9 0.026 14.2 0.6 1.7 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.2 gi|397780823|ref|YP_006545296.1| - 0.034 13.9 0.6 0.086 12.6 0.4 1.7 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|397780823|ref|YP_006545296.1| - 0.13 12.0 2.6 9.9 6.0 0.0 2.5 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.1 gi|397780823|ref|YP_006545296.1| - 0.15 11.5 1.7 8.1 6.0 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|397780823|ref|YP_006545296.1| - 0.16 11.6 0.2 0.37 10.4 0.0 1.7 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|397780823|ref|YP_006545296.1| - 1.3 8.9 6.2 33 4.4 4.3 2.5 1 1 0 1 1 1 0 Rubredoxin NTP_transf_2 PF01909.18 gi|397780824|ref|YP_006545297.1| - 1.3e-13 51.0 0.0 1.4e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain MdcG PF10620.4 gi|397780824|ref|YP_006545297.1| - 0.013 15.0 0.6 0.025 14.1 0.4 1.6 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DUF294 PF03445.8 gi|397780824|ref|YP_006545297.1| - 0.031 13.9 0.0 0.038 13.6 0.0 1.4 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF217 PF02697.9 gi|397780825|ref|YP_006545298.1| - 0.0011 19.2 0.2 0.0014 18.8 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 MgtE_N PF03448.12 gi|397780825|ref|YP_006545298.1| - 0.092 13.0 0.5 0.11 12.8 0.3 1.3 1 1 0 1 1 1 0 MgtE intracellular N domain Acylphosphatase PF00708.13 gi|397780826|ref|YP_006545299.1| - 2.3e-22 78.9 0.2 4.2e-22 78.0 0.1 1.5 1 0 0 1 1 1 1 Acylphosphatase DUF3552 PF12072.3 gi|397780826|ref|YP_006545299.1| - 0.0017 17.5 15.9 0.0036 16.5 11.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) V_ATPase_I PF01496.14 gi|397780826|ref|YP_006545299.1| - 0.94 7.2 6.0 1.1 6.9 4.2 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4055 PF13264.1 gi|397780826|ref|YP_006545299.1| - 4.4 7.3 9.6 6.2 6.9 0.8 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4055) DUF1814 PF08843.6 gi|397780829|ref|YP_006545302.1| - 0.0034 17.2 0.0 0.0049 16.6 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) PYNP_C PF07831.8 gi|397780831|ref|YP_006545304.1| - 2.1e-13 49.5 0.0 2.5e-12 46.0 0.0 2.6 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.12 gi|397780831|ref|YP_006545304.1| - 2.3e-12 46.3 0.0 4.1e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.16 gi|397780831|ref|YP_006545304.1| - 3.3e-10 39.8 0.7 9.4e-09 35.0 0.1 2.5 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Molydop_binding PF01568.16 gi|397780831|ref|YP_006545304.1| - 0.00025 20.8 0.0 0.00064 19.5 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain HlyD_3 PF13437.1 gi|397780831|ref|YP_006545304.1| - 0.00085 19.6 0.2 0.29 11.4 0.0 3.8 4 0 0 4 4 4 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.1 gi|397780831|ref|YP_006545304.1| - 0.0014 18.2 0.1 0.071 12.7 0.0 3.3 3 1 0 3 3 3 1 Biotin-lipoyl like DUF2254 PF10011.4 gi|397780831|ref|YP_006545304.1| - 0.0043 15.5 0.0 0.0064 14.9 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) HlyD_2 PF12700.2 gi|397780831|ref|YP_006545304.1| - 0.0053 15.9 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 HlyD family secretion protein Biotin_lipoyl PF00364.17 gi|397780831|ref|YP_006545304.1| - 0.035 13.7 0.0 3.2 7.4 0.0 3.6 3 0 0 3 3 3 0 Biotin-requiring enzyme CDC48_N PF02359.13 gi|397780831|ref|YP_006545304.1| - 0.042 13.7 0.1 0.11 12.4 0.1 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain DUF4480 PF13715.1 gi|397780832|ref|YP_006545305.1| - 2.8e-27 94.6 0.5 3.5e-05 23.7 0.0 5.1 2 2 3 5 5 5 5 Domain of unknown function (DUF4480) CarboxypepD_reg PF13620.1 gi|397780832|ref|YP_006545305.1| - 1.5e-25 89.0 20.5 3.8e-08 33.2 0.0 5.2 5 0 0 5 5 5 5 Carboxypeptidase regulatory-like domain PEGA PF08308.6 gi|397780832|ref|YP_006545305.1| - 2.2e-23 81.8 6.9 2.2e-08 33.7 0.1 5.4 5 0 0 5 5 5 4 PEGA domain DUF2846 PF11008.3 gi|397780832|ref|YP_006545305.1| - 1.9e-10 40.5 0.2 0.048 13.4 0.0 4.4 3 2 1 4 4 4 3 Protein of unknown function (DUF2846) BetaGal_dom4_5 PF13364.1 gi|397780832|ref|YP_006545305.1| - 0.00042 20.5 0.2 1.4 9.2 0.0 3.3 2 1 1 3 3 3 2 Beta-galactosidase jelly roll domain DUF2012 PF09430.5 gi|397780832|ref|YP_006545305.1| - 0.0007 19.4 0.4 0.012 15.4 0.0 3.1 3 2 1 4 4 4 1 Protein of unknown function (DUF2012) BiPBP_C PF06832.7 gi|397780832|ref|YP_006545305.1| - 0.0037 17.1 0.0 14 5.6 0.0 3.5 3 0 0 3 3 3 0 Penicillin-Binding Protein C-terminus Family UPF0560 PF10577.4 gi|397780832|ref|YP_006545305.1| - 0.061 11.5 0.3 6.3 4.9 0.0 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0560 CBM27 PF09212.5 gi|397780832|ref|YP_006545305.1| - 0.067 13.2 0.0 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 Carbohydrate binding module 27 fn3_3 PF14686.1 gi|397780832|ref|YP_006545305.1| - 0.14 12.2 4.9 0.12 12.5 0.2 3.1 3 1 0 3 3 3 0 Polysaccharide lyase family 4, domain II DUF1533 PF07550.6 gi|397780832|ref|YP_006545305.1| - 0.17 11.8 1.1 1.7 8.7 0.0 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF1533) DUF4249 PF14054.1 gi|397780832|ref|YP_006545305.1| - 0.59 9.4 10.8 3.9 6.7 0.4 4.4 4 1 1 5 5 5 0 Domain of unknown function (DUF4249) YtkA PF13115.1 gi|397780832|ref|YP_006545305.1| - 9.1 6.7 8.4 19 5.6 0.1 4.5 5 0 0 5 5 5 0 YtkA-like VWA_2 PF13519.1 gi|397780833|ref|YP_006545306.1| - 9.1e-22 77.9 0.1 2e-21 76.8 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain Big_1 PF02369.11 gi|397780833|ref|YP_006545306.1| - 1.2e-12 47.5 29.8 0.00016 21.4 1.1 6.1 5 1 0 6 6 6 4 Bacterial Ig-like domain (group 1) VWA PF00092.23 gi|397780833|ref|YP_006545306.1| - 8.4e-08 32.1 0.1 1e-06 28.6 0.1 2.6 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|397780833|ref|YP_006545306.1| - 0.0058 16.3 0.0 0.64 9.6 0.0 3.3 2 1 0 2 2 2 1 von Willebrand factor type A domain DUF824 PF05688.6 gi|397780833|ref|YP_006545306.1| - 0.045 13.3 2.8 1.8 8.2 0.0 3.7 4 0 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) Big_1 PF02369.11 gi|397780834|ref|YP_006545307.1| - 8.3e-20 70.5 27.8 1.3e-06 28.1 0.1 5.4 4 1 2 6 6 6 5 Bacterial Ig-like domain (group 1) VWA_2 PF13519.1 gi|397780834|ref|YP_006545307.1| - 5e-10 39.7 0.0 2.1e-09 37.6 0.0 2.0 1 1 0 1 1 1 1 von Willebrand factor type A domain Y_Y_Y PF07495.8 gi|397780835|ref|YP_006545308.1| - 0.001 18.8 0.0 0.0018 17.9 0.0 1.5 1 0 0 1 1 1 1 Y_Y_Y domain FlgD_ig PF13860.1 gi|397780835|ref|YP_006545308.1| - 0.006 16.2 0.0 0.01 15.5 0.0 1.4 1 1 0 1 1 1 1 FlgD Ig-like domain Wzt_C PF14524.1 gi|397780835|ref|YP_006545308.1| - 0.042 13.5 0.0 0.058 13.0 0.0 1.3 1 0 0 1 1 1 0 Wzt C-terminal domain VWA_2 PF13519.1 gi|397780836|ref|YP_006545309.1| - 1.5e-28 100.0 0.6 4e-28 98.6 0.4 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain Big_1 PF02369.11 gi|397780836|ref|YP_006545309.1| - 7.5e-23 80.3 27.7 6.6e-09 35.5 0.3 5.4 5 1 0 5 5 5 4 Bacterial Ig-like domain (group 1) VWA PF00092.23 gi|397780836|ref|YP_006545309.1| - 2.8e-21 76.0 0.2 6.2e-21 74.9 0.0 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|397780836|ref|YP_006545309.1| - 1.3e-07 31.4 0.0 1.4e-06 28.0 0.0 2.3 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|397780836|ref|YP_006545309.1| - 0.019 14.9 0.0 0.049 13.6 0.0 1.7 1 0 0 1 1 1 0 VWA-like domain (DUF2201) vWA-TerF-like PF10138.4 gi|397780836|ref|YP_006545309.1| - 0.039 13.7 0.0 0.081 12.7 0.0 1.5 1 0 0 1 1 1 0 vWA found in TerF C terminus dUTPase PF00692.14 gi|397780837|ref|YP_006545310.1| - 4.5e-19 68.1 0.0 6.4e-19 67.6 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|397780837|ref|YP_006545310.1| - 0.0063 14.9 0.1 0.65 8.3 0.0 2.5 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF128 PF01995.11 gi|397780838|ref|YP_006545311.1| - 1.3e-69 233.7 0.0 1.6e-69 233.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|397780838|ref|YP_006545311.1| - 9e-20 70.1 0.2 2.3e-19 68.8 0.1 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain SelB-wing_3 PF09107.6 gi|397780838|ref|YP_006545311.1| - 0.025 13.9 0.0 0.05 12.9 0.0 1.5 1 0 0 1 1 1 0 Elongation factor SelB, winged helix Ribosomal_S19e PF01090.14 gi|397780838|ref|YP_006545311.1| - 0.046 13.1 0.0 0.082 12.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e DUF3684 PF12449.3 gi|397780838|ref|YP_006545311.1| - 0.12 9.9 0.0 0.15 9.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3684) Tubulin PF00091.20 gi|397780839|ref|YP_006545312.1| - 2.6e-06 27.4 0.0 0.00025 20.9 0.0 2.2 2 0 0 2 2 2 2 Tubulin/FtsZ family, GTPase domain Bac_luciferase PF00296.15 gi|397780840|ref|YP_006545313.1| - 1.3e-52 178.8 0.0 1.4e-52 178.7 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase GFO_IDH_MocA PF01408.17 gi|397780840|ref|YP_006545313.1| - 0.081 13.4 0.0 4.9 7.7 0.0 2.8 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold MTD PF01993.13 gi|397780842|ref|YP_006545315.1| - 2.2e-105 351.6 7.7 2.5e-105 351.4 5.3 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase TFX_C PF14601.1 gi|397780843|ref|YP_006545316.1| - 5.9e-30 102.9 0.0 9.1e-30 102.2 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|397780843|ref|YP_006545316.1| - 7.4e-08 31.5 0.1 1.3e-07 30.8 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|397780843|ref|YP_006545316.1| - 7e-06 25.2 0.4 1.2e-05 24.5 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|397780843|ref|YP_006545316.1| - 0.0017 17.7 0.1 0.0044 16.4 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 UPF0122 PF04297.9 gi|397780843|ref|YP_006545316.1| - 0.0059 16.6 0.2 0.012 15.6 0.2 1.6 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_38 PF13936.1 gi|397780843|ref|YP_006545316.1| - 0.0069 15.9 0.1 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|397780843|ref|YP_006545316.1| - 0.019 14.7 0.2 0.081 12.7 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|397780843|ref|YP_006545316.1| - 0.031 14.4 0.1 0.082 13.1 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|397780843|ref|YP_006545316.1| - 0.035 13.7 0.3 0.062 12.9 0.2 1.4 1 0 0 1 1 1 0 Homeodomain-like domain LXG PF04740.7 gi|397780843|ref|YP_006545316.1| - 0.041 13.6 0.1 0.046 13.5 0.0 1.1 1 0 0 1 1 1 0 LXG domain of WXG superfamily CPSase_L_D3 PF02787.14 gi|397780843|ref|YP_006545316.1| - 0.059 13.1 0.3 0.11 12.2 0.1 1.6 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DUF2481 PF10654.4 gi|397780843|ref|YP_006545316.1| - 0.068 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) B-block_TFIIIC PF04182.7 gi|397780843|ref|YP_006545316.1| - 0.13 12.1 0.2 0.76 9.6 0.0 2.1 1 1 1 2 2 2 0 B-block binding subunit of TFIIIC Ribosomal_L3 PF00297.17 gi|397780844|ref|YP_006545317.1| - 1.7e-80 270.2 1.5 2e-80 269.9 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|397780845|ref|YP_006545318.1| - 1.4e-43 148.5 0.6 1.6e-43 148.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|397780846|ref|YP_006545319.1| - 1e-14 54.1 0.9 1.6e-14 53.5 0.6 1.4 1 1 0 1 1 1 1 Ribosomal protein L23 RRM_6 PF14259.1 gi|397780846|ref|YP_006545319.1| - 0.00091 19.1 0.1 0.0012 18.7 0.1 1.2 1 0 0 1 1 1 1 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) RRM_3 PF08777.6 gi|397780846|ref|YP_006545319.1| - 0.0018 18.1 0.1 0.0022 17.8 0.1 1.3 1 0 0 1 1 1 1 RNA binding motif RRM_1 PF00076.17 gi|397780846|ref|YP_006545319.1| - 0.0061 16.1 0.1 0.0093 15.5 0.1 1.3 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Calcipressin PF04847.7 gi|397780846|ref|YP_006545319.1| - 0.019 14.5 0.2 0.024 14.1 0.1 1.1 1 0 0 1 1 1 0 Calcipressin WhiA_N PF10298.4 gi|397780846|ref|YP_006545319.1| - 0.083 12.7 0.1 0.098 12.5 0.1 1.1 1 0 0 1 1 1 0 WhiA N-terminal LAGLIDADG-like domain Ribosomal_L2_C PF03947.13 gi|397780847|ref|YP_006545320.1| - 2.8e-39 133.8 1.2 4.1e-39 133.3 0.8 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|397780847|ref|YP_006545320.1| - 2e-14 53.2 0.0 9.5e-14 51.1 0.0 2.2 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|397780848|ref|YP_006545321.1| - 4.1e-23 80.7 0.1 5.6e-23 80.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.14 gi|397780849|ref|YP_006545322.1| - 1.2e-32 111.9 0.3 1.4e-32 111.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.15 gi|397780850|ref|YP_006545323.1| - 4.4e-17 62.0 0.5 7.7e-17 61.2 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|397780850|ref|YP_006545323.1| - 1.1e-14 53.7 0.1 2e-14 52.8 0.0 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|397780850|ref|YP_006545323.1| - 3.4e-05 23.3 0.5 0.00011 21.7 0.0 2.1 3 0 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|397780850|ref|YP_006545323.1| - 0.048 13.3 0.3 0.16 11.6 0.1 2.0 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.18 gi|397780851|ref|YP_006545324.1| - 3.2e-16 58.7 2.0 3.5e-16 58.6 1.4 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein UPF0086 PF01868.11 gi|397780852|ref|YP_006545325.1| - 9.4e-34 114.9 0.1 1e-33 114.8 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Myosin_N PF02736.14 gi|397780852|ref|YP_006545325.1| - 0.14 11.8 0.2 0.7 9.6 0.1 1.9 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Ribosomal_S17 PF00366.15 gi|397780853|ref|YP_006545326.1| - 7.1e-27 93.2 3.8 8.9e-27 92.9 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.14 gi|397780854|ref|YP_006545327.1| - 1.8e-35 121.3 0.0 2e-35 121.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e UnbV_ASPIC PF07593.7 gi|397780854|ref|YP_006545327.1| - 0.084 12.5 0.1 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 ASPIC and UnbV KOW PF00467.24 gi|397780855|ref|YP_006545328.1| - 5.5e-08 32.2 0.9 5.5e-08 32.2 0.6 2.2 2 0 0 2 2 2 1 KOW motif Ribosomal_S4e PF00900.15 gi|397780856|ref|YP_006545329.1| - 1.4e-25 88.7 0.2 2.8e-25 87.7 0.1 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|397780856|ref|YP_006545329.1| - 1.3e-12 47.3 0.9 2.4e-12 46.4 0.6 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.24 gi|397780856|ref|YP_006545329.1| - 1.3e-05 24.7 1.5 1.3e-05 24.7 1.0 2.1 2 0 0 2 2 2 1 KOW motif S4 PF01479.20 gi|397780856|ref|YP_006545329.1| - 0.0011 18.3 1.0 0.0062 15.9 0.1 2.3 2 0 0 2 2 2 1 S4 domain S4_2 PF13275.1 gi|397780856|ref|YP_006545329.1| - 0.05 13.2 0.1 0.89 9.1 0.0 2.5 2 0 0 2 2 2 0 S4 domain Ribosomal_L5_C PF00673.16 gi|397780857|ref|YP_006545330.1| - 6e-27 93.2 0.0 9.5e-27 92.5 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|397780857|ref|YP_006545330.1| - 1.9e-16 59.5 0.1 3.8e-16 58.5 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|397780858|ref|YP_006545331.1| - 5.1e-21 73.8 4.6 5.9e-21 73.5 3.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|397780858|ref|YP_006545331.1| - 0.0037 16.9 0.7 0.0046 16.6 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_L37ae PF01780.14 gi|397780858|ref|YP_006545331.1| - 0.0047 16.7 1.9 0.0057 16.5 1.3 1.2 1 0 0 1 1 1 1 Ribosomal L37ae protein family PHF5 PF03660.9 gi|397780858|ref|YP_006545331.1| - 0.025 14.6 0.3 0.027 14.5 0.2 1.1 1 0 0 1 1 1 0 PHF5-like protein FYVE PF01363.16 gi|397780858|ref|YP_006545331.1| - 0.034 14.0 0.6 0.042 13.7 0.4 1.2 1 0 0 1 1 1 0 FYVE zinc finger DUF2318 PF10080.4 gi|397780858|ref|YP_006545331.1| - 0.047 13.4 0.3 0.054 13.2 0.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Cript PF10235.4 gi|397780858|ref|YP_006545331.1| - 0.048 14.0 0.5 0.056 13.7 0.3 1.2 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT A2L_zn_ribbon PF08792.5 gi|397780858|ref|YP_006545331.1| - 0.053 12.9 1.9 0.077 12.4 1.3 1.2 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-RING_2 PF13639.1 gi|397780858|ref|YP_006545331.1| - 0.44 10.4 3.1 2.2 8.1 2.1 1.9 1 1 0 1 1 1 0 Ring finger domain Prim_Zn_Ribbon PF08273.7 gi|397780858|ref|YP_006545331.1| - 2.2 8.4 5.9 9.2 6.4 3.8 1.9 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Ribosomal_S8 PF00410.14 gi|397780859|ref|YP_006545332.1| - 1.5e-25 89.5 0.0 2e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|397780860|ref|YP_006545333.1| - 1.1e-27 96.3 0.1 1.5e-12 47.7 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_L32e PF01655.13 gi|397780861|ref|YP_006545334.1| - 1.2e-36 125.0 0.0 1.5e-36 124.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.15 gi|397780862|ref|YP_006545335.1| - 3.3e-56 189.1 8.3 3.7e-56 189.0 5.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L18p PF00861.17 gi|397780863|ref|YP_006545336.1| - 2.4e-32 111.6 0.0 3.2e-32 111.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_S5 PF00333.15 gi|397780864|ref|YP_006545337.1| - 1.9e-28 97.9 3.6 3.8e-28 97.0 2.5 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|397780864|ref|YP_006545337.1| - 1e-23 82.3 0.1 1.8e-23 81.5 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L21p PF00829.16 gi|397780864|ref|YP_006545337.1| - 0.0051 16.9 0.3 0.011 15.8 0.1 1.5 2 0 0 2 2 2 1 Ribosomal prokaryotic L21 protein Ribosomal_L30 PF00327.15 gi|397780865|ref|YP_006545338.1| - 5.8e-22 77.0 0.4 1.1e-21 76.1 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|397780866|ref|YP_006545339.1| - 2.8e-26 92.4 1.6 3.2e-26 92.1 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|397780867|ref|YP_006545340.1| - 1.3e-96 323.5 22.2 1.6e-96 323.2 15.4 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|397780867|ref|YP_006545340.1| - 2.2e-11 43.0 0.6 7.6e-11 41.3 0.4 2.0 1 0 0 1 1 1 1 Plug domain of Sec61p AAA_18 PF13238.1 gi|397780868|ref|YP_006545341.1| - 1.1e-15 58.1 0.0 1.4e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|397780868|ref|YP_006545341.1| - 1.5e-06 29.0 0.0 1.9e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|397780868|ref|YP_006545341.1| - 1.7e-06 27.8 0.0 2e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.1 gi|397780868|ref|YP_006545341.1| - 1.7e-05 24.7 0.0 2.7e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|397780868|ref|YP_006545341.1| - 2.8e-05 23.9 0.3 5e-05 23.0 0.2 1.4 1 0 0 1 1 1 1 NTPase AAA_19 PF13245.1 gi|397780868|ref|YP_006545341.1| - 3.9e-05 23.3 0.5 0.00011 21.8 0.4 1.7 1 0 0 1 1 1 1 Part of AAA domain Thymidylate_kin PF02223.12 gi|397780868|ref|YP_006545341.1| - 9.6e-05 21.8 0.0 0.41 10.0 0.0 2.5 2 1 1 3 3 3 2 Thymidylate kinase AAA_16 PF13191.1 gi|397780868|ref|YP_006545341.1| - 0.00024 21.1 0.0 0.00029 20.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|397780868|ref|YP_006545341.1| - 0.00027 20.9 0.3 0.00046 20.1 0.2 1.6 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|397780868|ref|YP_006545341.1| - 0.0017 17.9 0.2 0.0088 15.6 0.1 1.9 1 1 0 2 2 2 1 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|397780868|ref|YP_006545341.1| - 0.0026 17.4 1.2 0.029 14.0 0.8 2.2 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|397780868|ref|YP_006545341.1| - 0.0063 15.3 1.2 0.011 14.5 0.4 1.6 1 1 0 2 2 2 1 ArgK protein AAA_22 PF13401.1 gi|397780868|ref|YP_006545341.1| - 0.0065 16.6 0.1 0.013 15.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|397780868|ref|YP_006545341.1| - 0.0092 15.5 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA PF00004.24 gi|397780868|ref|YP_006545341.1| - 0.012 15.7 0.2 0.022 14.9 0.1 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|397780868|ref|YP_006545341.1| - 0.013 15.3 0.0 0.018 14.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|397780868|ref|YP_006545341.1| - 0.018 14.6 1.2 2.1 7.8 0.1 2.1 1 1 1 2 2 2 0 AAA domain Sec34 PF04136.10 gi|397780868|ref|YP_006545341.1| - 0.02 14.6 0.0 0.03 14.0 0.0 1.2 1 0 0 1 1 1 0 Sec34-like family KTI12 PF08433.5 gi|397780868|ref|YP_006545341.1| - 0.02 14.0 0.0 0.023 13.9 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 SRP54 PF00448.17 gi|397780868|ref|YP_006545341.1| - 0.022 14.2 0.1 0.028 13.8 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.18 gi|397780868|ref|YP_006545341.1| - 0.033 14.1 0.2 0.074 13.0 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.14 gi|397780868|ref|YP_006545341.1| - 0.033 13.6 0.2 0.068 12.6 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|397780868|ref|YP_006545341.1| - 0.036 13.6 1.8 0.089 12.3 1.3 1.7 1 1 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|397780868|ref|YP_006545341.1| - 0.043 12.6 0.0 1.8 7.4 0.0 2.1 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain DUF2075 PF09848.4 gi|397780868|ref|YP_006545341.1| - 0.07 12.0 0.0 0.093 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Miro PF08477.8 gi|397780868|ref|YP_006545341.1| - 0.077 13.4 0.2 0.19 12.2 0.1 1.7 2 1 0 2 2 2 0 Miro-like protein Arch_ATPase PF01637.13 gi|397780868|ref|YP_006545341.1| - 0.082 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Zeta_toxin PF06414.7 gi|397780868|ref|YP_006545341.1| - 0.086 11.9 0.4 0.3 10.1 0.3 1.9 1 1 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|397780868|ref|YP_006545341.1| - 0.097 12.0 0.1 0.16 11.3 0.1 1.7 1 1 0 1 1 1 0 AAA-like domain AAA_24 PF13479.1 gi|397780868|ref|YP_006545341.1| - 0.2 11.2 1.3 0.34 10.4 0.9 1.6 1 1 0 1 1 1 0 AAA domain DUF106 PF01956.11 gi|397780869|ref|YP_006545342.1| - 1.5e-40 138.5 3.8 2e-40 138.0 2.6 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF106 DUF2207 PF09972.4 gi|397780869|ref|YP_006545342.1| - 0.017 13.7 0.2 0.017 13.7 0.2 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) COX16 PF14138.1 gi|397780869|ref|YP_006545342.1| - 0.035 14.2 0.7 0.063 13.4 0.5 1.4 1 0 0 1 1 1 0 Cytochrome c oxidase assembly protein COX16 DUF2208 PF09973.4 gi|397780869|ref|YP_006545342.1| - 0.23 10.6 6.2 0.08 12.1 2.1 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2208) Cytidylate_kin2 PF13189.1 gi|397780870|ref|YP_006545343.1| - 2.6e-21 76.3 0.1 2.7e-20 73.0 0.1 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.1 gi|397780870|ref|YP_006545343.1| - 4.9e-12 46.7 0.1 8.2e-12 46.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|397780870|ref|YP_006545343.1| - 7.6e-12 45.6 0.0 1e-11 45.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|397780870|ref|YP_006545343.1| - 7.9e-08 31.8 0.1 1.1e-07 31.4 0.1 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA_28 PF13521.1 gi|397780870|ref|YP_006545343.1| - 0.00021 21.2 0.0 0.00029 20.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|397780870|ref|YP_006545343.1| - 0.00086 19.2 0.1 0.0031 17.3 0.0 1.8 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.1 gi|397780870|ref|YP_006545343.1| - 0.0011 18.8 0.0 0.006 16.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|397780870|ref|YP_006545343.1| - 0.0017 18.5 0.0 0.0028 17.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SKI PF01202.17 gi|397780870|ref|YP_006545343.1| - 0.0018 18.1 0.2 0.024 14.5 0.1 2.1 1 1 0 1 1 1 1 Shikimate kinase AAA_19 PF13245.1 gi|397780870|ref|YP_006545343.1| - 0.12 12.1 0.0 0.31 10.8 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain ATP-synt_D PF01813.12 gi|397780871|ref|YP_006545344.1| - 5e-52 176.3 3.0 5.8e-52 176.1 2.1 1.0 1 0 0 1 1 1 1 ATP synthase subunit D PIN PF01850.16 gi|397780871|ref|YP_006545344.1| - 0.021 15.1 3.3 1.1 9.5 0.2 2.2 2 0 0 2 2 2 0 PIN domain Cep57_CLD_2 PF14197.1 gi|397780871|ref|YP_006545344.1| - 1.8 8.5 7.4 5.8 6.9 0.4 2.3 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 vATP-synt_AC39 PF01992.11 gi|397780872|ref|YP_006545345.1| - 2.5e-53 181.3 0.0 3e-53 181.1 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit His_biosynth PF00977.16 gi|397780873|ref|YP_006545346.1| - 2e-86 288.9 0.1 2.3e-86 288.7 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|397780873|ref|YP_006545346.1| - 0.0002 20.3 0.0 0.0017 17.2 0.0 2.0 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|397780873|ref|YP_006545346.1| - 0.00058 19.0 0.2 0.1 11.7 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|397780873|ref|YP_006545346.1| - 0.0084 15.2 0.2 0.14 11.2 0.0 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.7 gi|397780873|ref|YP_006545346.1| - 0.015 14.3 0.0 0.03 13.3 0.0 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator PcrB PF01884.12 gi|397780873|ref|YP_006545346.1| - 0.022 14.0 0.3 0.099 11.8 0.1 1.9 1 1 1 2 2 2 0 PcrB family NMO PF03060.10 gi|397780873|ref|YP_006545346.1| - 0.043 12.9 3.7 3.2 6.8 0.5 2.4 2 1 0 2 2 2 0 Nitronate monooxygenase IMPDH PF00478.20 gi|397780873|ref|YP_006545346.1| - 0.051 12.4 0.5 0.25 10.1 0.0 1.9 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DUF111 PF01969.12 gi|397780873|ref|YP_006545346.1| - 0.11 11.2 0.0 0.16 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF111 B5 PF03484.10 gi|397780874|ref|YP_006545347.1| - 5.4e-18 64.5 0.0 1.2e-16 60.3 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|397780874|ref|YP_006545347.1| - 4.3e-15 55.6 0.0 6.9e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|397780875|ref|YP_006545348.1| - 3.2e-91 304.9 0.0 4e-91 304.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|397780875|ref|YP_006545348.1| - 3.2e-05 23.5 0.0 8.8e-05 22.1 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|397780875|ref|YP_006545348.1| - 0.002 16.9 1.4 0.024 13.4 0.1 2.7 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) tRNA-synt_1b PF00579.20 gi|397780876|ref|YP_006545349.1| - 2e-28 99.3 0.0 2.6e-18 66.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Sep15_SelM PF08806.6 gi|397780876|ref|YP_006545349.1| - 0.041 13.6 0.2 1.4 8.7 0.0 2.5 2 0 0 2 2 2 0 Sep15/SelM redox domain tRNA_int_endo PF01974.12 gi|397780877|ref|YP_006545350.1| - 4.2e-44 148.2 2.5 1.8e-22 78.9 0.2 2.2 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|397780877|ref|YP_006545350.1| - 2.8e-28 97.2 0.1 1.9e-13 49.7 0.1 2.7 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|397780877|ref|YP_006545350.1| - 7.7e-07 28.4 0.6 0.00079 18.8 0.1 2.4 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term PQQ_3 PF13570.1 gi|397780878|ref|YP_006545351.1| - 0.0011 19.2 32.0 0.058 13.6 0.2 7.3 8 0 0 8 8 8 4 PQQ-like domain DUF1654 PF07867.6 gi|397780878|ref|YP_006545351.1| - 0.096 12.0 0.0 8.2 5.8 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1654) DUF2064 PF09837.4 gi|397780878|ref|YP_006545351.1| - 0.7 9.5 11.5 11 5.6 0.0 5.0 6 0 0 6 6 6 0 Uncharacterized protein conserved in bacteria (DUF2064) PKD PF00801.15 gi|397780879|ref|YP_006545352.1| - 2.4e-39 132.9 19.1 3.2e-15 55.6 3.0 4.0 3 0 0 3 3 3 3 PKD domain AP_endonuc_2 PF01261.19 gi|590000687|ref|YP_006545353.2| - 8.3e-30 103.6 0.8 1.1e-29 103.3 0.5 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Iso_dh PF00180.15 gi|590000688|ref|YP_009001420.1| - 7.4e-91 304.6 0.0 5.4e-90 301.8 0.0 1.8 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|397780882|ref|YP_006545355.1| - 3.6e-16 59.4 0.1 6.9e-16 58.5 0.1 1.3 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|397780882|ref|YP_006545355.1| - 0.0072 15.7 0.1 0.17 11.2 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Aconitase PF00330.15 gi|397780883|ref|YP_006545356.1| - 1.4e-67 228.2 5.9 2.1e-45 155.0 0.4 2.8 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|397780883|ref|YP_006545356.1| - 0.0023 16.5 0.0 0.0035 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) HMGL-like PF00682.14 gi|397780884|ref|YP_006545357.1| - 4e-71 239.4 0.6 5e-71 239.1 0.4 1.1 1 0 0 1 1 1 1 HMGL-like TPP_enzyme_C PF02775.16 gi|397780885|ref|YP_006545358.1| - 7.3e-08 32.1 0.2 7.3e-08 32.1 0.1 2.4 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|397780885|ref|YP_006545358.1| - 0.0045 16.5 7.7 0.025 14.0 2.7 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Radical_SAM PF04055.16 gi|397780886|ref|YP_006545359.1| - 2.9e-11 43.8 0.0 5.4e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF1743 PF08489.6 gi|397780887|ref|YP_006545360.1| - 1.1e-23 83.1 0.0 1.8e-22 79.2 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF1743) NSP11 PF06471.7 gi|397780887|ref|YP_006545360.1| - 0.07 11.3 0.0 0.18 9.9 0.0 1.5 2 0 0 2 2 2 0 NSP11 DUF1743 PF08489.6 gi|397780888|ref|YP_006545361.1| - 5.3e-15 55.1 0.3 1.6e-14 53.6 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) TruB_C PF09142.6 gi|397780888|ref|YP_006545361.1| - 0.33 10.6 3.0 0.59 9.8 0.2 2.8 3 0 0 3 3 3 0 tRNA Pseudouridine synthase II, C terminal FTR_C PF02741.10 gi|397780889|ref|YP_006545362.1| - 4.6e-70 234.2 2.8 8.1e-70 233.4 1.9 1.4 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.13 gi|397780889|ref|YP_006545362.1| - 4e-61 204.9 0.1 6.7e-61 204.2 0.1 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase Fer4 PF00037.22 gi|397780890|ref|YP_006545363.1| - 8.4e-18 63.1 12.9 2.1e-09 36.5 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397780890|ref|YP_006545363.1| - 1.5e-16 60.5 19.8 1.7e-12 47.5 7.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397780890|ref|YP_006545363.1| - 6.5e-13 47.9 12.3 9.6e-07 28.4 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|397780890|ref|YP_006545363.1| - 7.2e-13 49.0 16.6 3.2e-10 40.6 5.4 1.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|397780890|ref|YP_006545363.1| - 1.1e-12 47.0 11.5 1.3e-06 28.0 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397780890|ref|YP_006545363.1| - 9.1e-12 44.6 19.1 7e-09 35.3 7.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397780890|ref|YP_006545363.1| - 1.6e-11 44.3 8.9 2.4e-11 43.7 6.1 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397780890|ref|YP_006545363.1| - 2.1e-09 36.9 11.6 0.00014 21.8 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|397780890|ref|YP_006545363.1| - 2.8e-09 36.6 12.5 5e-08 32.6 8.8 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397780890|ref|YP_006545363.1| - 2.1e-08 34.4 7.0 0.00062 20.1 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|397780890|ref|YP_006545363.1| - 2.8e-08 33.6 8.8 8.2e-08 32.1 6.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397780890|ref|YP_006545363.1| - 3.3e-07 30.5 21.3 2.9e-06 27.5 7.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|397780890|ref|YP_006545363.1| - 8.9e-06 25.8 23.1 0.0094 16.4 5.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|397780890|ref|YP_006545363.1| - 1.4e-05 25.5 13.0 0.015 15.8 1.7 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|397780890|ref|YP_006545363.1| - 1.5e-05 24.8 3.4 0.00012 21.9 2.3 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|397780890|ref|YP_006545363.1| - 0.033 14.5 16.3 0.65 10.4 2.6 2.6 1 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|397780890|ref|YP_006545363.1| - 0.052 13.3 7.4 0.1 12.4 0.1 2.5 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Molybdop_Fe4S4 PF04879.11 gi|397780890|ref|YP_006545363.1| - 0.93 9.3 5.8 0.29 10.9 0.5 2.2 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain Fer4 PF00037.22 gi|397780891|ref|YP_006545364.1| - 6.9e-45 148.9 93.6 1.4e-07 30.8 3.3 8.9 8 1 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397780891|ref|YP_006545364.1| - 2.5e-37 127.0 67.6 2.2e-12 47.1 6.3 5.2 3 1 2 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397780891|ref|YP_006545364.1| - 4.8e-30 103.1 69.1 1.2e-08 34.5 5.8 5.9 4 2 2 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397780891|ref|YP_006545364.1| - 9.5e-29 98.0 88.8 2.7e-05 23.8 1.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_16 PF13484.1 gi|397780891|ref|YP_006545364.1| - 4e-28 97.9 64.4 1.8e-08 35.0 4.9 6.4 5 1 1 6 6 6 6 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|397780891|ref|YP_006545364.1| - 1.7e-27 95.4 71.6 6.1e-10 39.2 6.5 6.1 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397780891|ref|YP_006545364.1| - 1.2e-26 92.3 64.4 2.7e-05 23.9 7.7 6.9 6 1 1 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397780891|ref|YP_006545364.1| - 8.8e-24 81.9 87.2 1.1e-05 25.0 2.2 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397780891|ref|YP_006545364.1| - 3.3e-17 62.2 66.4 5.2e-06 26.3 5.4 5.6 3 3 3 6 6 6 6 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397780891|ref|YP_006545364.1| - 3.3e-16 59.3 54.9 0.00016 21.9 3.9 6.5 5 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397780891|ref|YP_006545364.1| - 2.1e-11 44.2 65.9 0.0085 16.6 0.1 8.2 7 1 0 7 7 7 5 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|397780891|ref|YP_006545364.1| - 8.2e-11 41.6 105.4 0.0037 17.7 3.2 8.5 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_18 PF13746.1 gi|397780891|ref|YP_006545364.1| - 2.8e-10 40.4 60.1 0.0044 17.4 0.3 8.2 8 0 0 8 8 8 6 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397780891|ref|YP_006545364.1| - 4.7e-08 32.7 84.0 0.0016 18.5 2.3 8.4 8 1 0 8 8 8 5 4Fe-4S binding domain Fer4_11 PF13247.1 gi|397780891|ref|YP_006545364.1| - 1e-07 31.7 44.9 0.0017 18.2 2.1 5.7 3 2 1 6 6 6 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|397780891|ref|YP_006545364.1| - 0.0044 17.3 86.4 0.12 12.7 1.5 8.4 7 1 0 7 7 7 4 4Fe-4S single cluster domain PRP21_like_P PF12230.3 gi|397780891|ref|YP_006545364.1| - 0.21 11.0 1.4 14 5.0 0.0 2.5 2 0 0 2 2 2 0 Pre-mRNA splicing factor PRP21 like protein Fer4_8 PF13183.1 gi|397780892|ref|YP_006545365.1| - 4.5e-12 45.7 6.0 7.7e-12 45.0 4.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397780892|ref|YP_006545365.1| - 9.7e-10 38.6 3.0 1.9e-09 37.7 2.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397780892|ref|YP_006545365.1| - 1.6e-07 31.4 8.3 7.9e-06 26.0 6.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397780892|ref|YP_006545365.1| - 7.8e-07 28.7 5.4 1.6e-06 27.7 3.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397780892|ref|YP_006545365.1| - 0.0005 20.3 11.3 0.014 15.7 8.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397780892|ref|YP_006545365.1| - 0.0012 19.1 10.9 0.19 12.1 2.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397780892|ref|YP_006545365.1| - 0.0018 18.9 8.1 0.27 12.0 0.1 2.5 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|397780892|ref|YP_006545365.1| - 0.0029 17.4 12.9 0.035 14.0 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|397780892|ref|YP_006545365.1| - 0.0053 16.9 10.7 0.066 13.5 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|397780892|ref|YP_006545365.1| - 0.025 14.4 7.4 0.071 12.9 5.1 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|397780892|ref|YP_006545365.1| - 0.041 13.4 13.6 0.21 11.2 0.7 2.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397780892|ref|YP_006545365.1| - 0.52 10.2 11.8 0.92 9.4 1.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|397780892|ref|YP_006545365.1| - 2.7 8.7 15.1 0.89 10.2 1.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain CCG PF02754.11 gi|397780893|ref|YP_006545366.1| - 9.8e-31 105.6 0.4 1.4e-17 63.4 0.1 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Fer4 PF00037.22 gi|397780894|ref|YP_006545367.1| - 3.2e-16 58.1 42.5 0.00011 21.6 3.3 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397780894|ref|YP_006545367.1| - 1.4e-15 57.3 26.5 4.4e-08 33.3 7.1 3.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|397780894|ref|YP_006545367.1| - 2e-15 57.1 0.0 8e-14 51.9 0.0 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_21 PF14697.1 gi|397780894|ref|YP_006545367.1| - 2.2e-14 53.0 27.3 2.5e-08 33.6 6.0 4.0 4 0 0 4 4 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397780894|ref|YP_006545367.1| - 6.1e-14 52.0 24.3 2.9e-07 30.6 7.0 3.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397780894|ref|YP_006545367.1| - 4.3e-12 46.5 14.6 0.01 16.5 0.5 4.8 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|397780894|ref|YP_006545367.1| - 8.1e-12 44.9 21.9 1.3e-07 31.5 3.4 3.3 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397780894|ref|YP_006545367.1| - 8.4e-11 41.4 30.8 0.00016 21.4 9.2 4.3 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397780894|ref|YP_006545367.1| - 3e-10 39.5 36.4 0.00095 18.9 1.6 4.9 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|397780894|ref|YP_006545367.1| - 8e-08 32.5 27.5 2.7e-07 30.8 2.4 4.2 3 1 1 4 4 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397780894|ref|YP_006545367.1| - 1.2e-07 31.1 42.8 0.0045 16.8 1.8 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain FAD_oxidored PF12831.2 gi|397780894|ref|YP_006545367.1| - 2.2e-07 30.3 0.2 5.9e-07 28.9 0.1 1.7 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_18 PF13746.1 gi|397780894|ref|YP_006545367.1| - 2.3e-07 31.1 26.9 0.0084 16.5 0.3 5.4 5 0 0 5 5 5 4 4Fe-4S dicluster domain FAD_binding_2 PF00890.19 gi|397780894|ref|YP_006545367.1| - 8.7e-06 24.8 0.5 1.5e-05 24.0 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|397780894|ref|YP_006545367.1| - 5.1e-05 22.3 0.0 9.9e-05 21.3 0.0 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|397780894|ref|YP_006545367.1| - 5.8e-05 23.0 0.0 5.8e-05 23.0 0.0 2.4 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|397780894|ref|YP_006545367.1| - 0.00053 20.3 0.9 0.00053 20.3 0.6 3.1 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|397780894|ref|YP_006545367.1| - 0.00066 18.6 0.3 0.00066 18.6 0.2 3.1 3 0 0 3 3 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|397780894|ref|YP_006545367.1| - 0.00077 19.5 0.4 0.0071 16.4 0.1 2.6 3 1 1 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_4 PF12800.2 gi|397780894|ref|YP_006545367.1| - 0.0019 18.3 46.4 0.011 15.9 1.2 6.1 6 0 0 6 6 6 4 4Fe-4S binding domain FAD_binding_3 PF01494.14 gi|397780894|ref|YP_006545367.1| - 0.0021 17.1 0.8 0.0052 15.8 0.5 1.7 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|397780894|ref|YP_006545367.1| - 0.0028 16.7 0.0 0.0062 15.6 0.0 1.5 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|397780894|ref|YP_006545367.1| - 0.038 12.4 1.4 0.067 11.6 1.0 1.4 1 0 0 1 1 1 0 HI0933-like protein Amino_oxidase PF01593.19 gi|397780894|ref|YP_006545367.1| - 0.094 11.7 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Fer4_15 PF13459.1 gi|397780894|ref|YP_006545367.1| - 0.21 12.1 33.4 0.18 12.4 0.9 5.4 4 1 1 5 5 5 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|397780894|ref|YP_006545367.1| - 0.25 11.7 32.1 3.7 8.0 2.1 5.3 5 0 0 5 5 5 0 4Fe-4S single cluster domain FlpD PF02662.11 gi|397780895|ref|YP_006545368.1| - 6.6e-52 174.4 0.0 7.4e-52 174.2 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Molydop_binding PF01568.16 gi|397780896|ref|YP_006545369.1| - 2.7e-17 62.5 0.0 3.2e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|397780897|ref|YP_006545370.1| - 5.4e-13 48.4 0.0 1.1e-12 47.4 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.11 gi|397780897|ref|YP_006545370.1| - 0.086 12.6 0.2 0.24 11.2 0.1 1.8 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Amidohydro_3 PF07969.6 gi|397780898|ref|YP_006545371.1| - 1.3e-58 199.1 2.4 1.6e-58 198.8 1.6 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|397780898|ref|YP_006545371.1| - 4.9e-11 42.2 0.3 2e-10 40.3 0.2 2.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|397780898|ref|YP_006545371.1| - 1.7e-05 24.6 0.9 0.0016 18.2 0.1 2.5 2 1 0 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.15 gi|397780898|ref|YP_006545371.1| - 0.032 14.3 1.5 0.032 14.3 1.0 1.7 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain GXGXG PF01493.14 gi|397780899|ref|YP_006545372.1| - 1.1e-39 135.6 26.1 2e-39 134.7 18.1 1.4 1 1 0 1 1 1 1 GXGXG motif Img2 PF05046.9 gi|397780899|ref|YP_006545372.1| - 0.15 12.3 0.1 9.7 6.5 0.0 3.2 2 1 0 3 3 3 0 Mitochondrial large subunit ribosomal protein (Img2) MCR_beta PF02241.13 gi|397780900|ref|YP_006545373.1| - 2.5e-119 397.2 5.5 3.5e-119 396.7 3.8 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|397780900|ref|YP_006545373.1| - 2.2e-64 216.2 1.1 3.3e-64 215.7 0.8 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF1338 PF07063.8 gi|397780900|ref|YP_006545373.1| - 0.089 11.8 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1338) SKG6 PF08693.5 gi|397780900|ref|YP_006545373.1| - 0.66 9.3 3.3 1.4 8.3 2.3 1.4 1 0 0 1 1 1 0 Transmembrane alpha-helix domain MCR_D PF02505.9 gi|397780901|ref|YP_006545374.1| - 2.9e-40 137.3 0.0 3.5e-40 137.0 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_C PF04609.7 gi|397780902|ref|YP_006545375.1| - 2.1e-33 115.2 7.0 2.4e-30 105.2 2.5 3.0 1 1 1 2 2 2 2 Methyl-coenzyme M reductase operon protein C MCR_gamma PF02240.11 gi|397780903|ref|YP_006545376.1| - 1.3e-117 391.3 0.2 1.5e-117 391.1 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.10 gi|397780904|ref|YP_006545377.1| - 3.1e-133 442.9 0.1 4.1e-133 442.5 0.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|397780904|ref|YP_006545377.1| - 9.7e-66 219.5 2.1 9.7e-66 219.5 1.4 1.7 2 0 0 2 2 2 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_beta_N PF02783.10 gi|397780904|ref|YP_006545377.1| - 0.1 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain MtrE PF04206.7 gi|397780905|ref|YP_006545378.1| - 1.5e-104 348.7 12.2 1.8e-104 348.5 8.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E DUF4381 PF14316.1 gi|397780905|ref|YP_006545378.1| - 0.33 11.0 6.5 0.84 9.7 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) MerC PF03203.9 gi|397780905|ref|YP_006545378.1| - 6.4 7.1 11.4 0.048 14.0 0.8 2.3 3 0 0 3 3 3 0 MerC mercury resistance protein MtrD PF04207.7 gi|397780906|ref|YP_006545379.1| - 7.3e-69 231.5 27.2 8e-69 231.4 17.9 1.7 1 1 1 2 2 2 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrC PF04211.8 gi|397780907|ref|YP_006545380.1| - 8.6e-63 211.8 31.3 4.7e-61 206.1 21.7 2.0 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C CD99L2 PF12301.3 gi|397780907|ref|YP_006545380.1| - 1.2 8.8 3.8 2.5 7.7 2.6 1.6 1 0 0 1 1 1 0 CD99 antigen like protein 2 MtrB PF05440.7 gi|397780908|ref|YP_006545381.1| - 9e-19 67.3 0.2 1.2e-18 66.8 0.1 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrA PF04208.9 gi|397780909|ref|YP_006545382.1| - 1.1e-73 246.4 1.6 1.4e-73 246.0 1.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|397780909|ref|YP_006545382.1| - 0.0062 15.7 4.2 0.0062 15.7 2.9 2.7 2 1 0 2 2 2 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrF PF09472.5 gi|397780910|ref|YP_006545383.1| - 6.5e-25 86.1 4.0 7.2e-25 86.0 2.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.9 gi|397780911|ref|YP_006545384.1| - 6.6e-74 247.1 1.9 9.1e-74 246.6 1.3 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrG PF04210.8 gi|397780911|ref|YP_006545384.1| - 6.7e-22 76.9 0.6 6.7e-22 76.9 0.4 2.2 2 0 0 2 2 2 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF1469 PF07332.6 gi|397780911|ref|YP_006545384.1| - 4.3 7.0 5.7 0.45 10.2 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) MtrH PF02007.13 gi|397780912|ref|YP_006545385.1| - 9.3e-99 330.1 0.1 1.3e-98 329.6 0.1 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit cobW PF02492.14 gi|397780913|ref|YP_006545386.1| - 1.7e-12 47.1 0.0 2.3e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|397780913|ref|YP_006545386.1| - 0.0015 17.6 0.0 0.0023 17.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|397780913|ref|YP_006545386.1| - 0.0015 18.2 0.3 0.0037 16.9 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain KTI12 PF08433.5 gi|397780913|ref|YP_006545386.1| - 0.0068 15.6 0.0 0.0093 15.2 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 RecA PF00154.16 gi|397780913|ref|YP_006545386.1| - 0.13 11.3 0.1 0.4 9.7 0.0 1.7 2 0 0 2 2 2 0 recA bacterial DNA recombination protein ABC_tran PF00005.22 gi|397780914|ref|YP_006545387.1| - 1.7e-16 60.7 0.0 2.8e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780914|ref|YP_006545387.1| - 4.8e-08 33.3 0.1 0.0016 18.5 0.1 2.3 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|397780914|ref|YP_006545387.1| - 4.1e-05 23.6 0.0 7e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|397780914|ref|YP_006545387.1| - 0.0012 18.1 0.1 0.011 14.9 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|397780914|ref|YP_006545387.1| - 0.006 16.7 0.1 0.031 14.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|397780914|ref|YP_006545387.1| - 0.011 15.2 0.0 0.041 13.4 0.0 2.0 1 1 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|397780914|ref|YP_006545387.1| - 0.018 14.4 0.1 0.065 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|397780914|ref|YP_006545387.1| - 0.022 14.4 0.0 0.058 13.0 0.0 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|397780914|ref|YP_006545387.1| - 0.033 13.9 0.2 0.53 9.9 0.1 2.2 1 1 0 1 1 1 0 Archaeal ATPase AAA_33 PF13671.1 gi|397780914|ref|YP_006545387.1| - 0.068 13.0 0.1 0.2 11.5 0.0 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|397780914|ref|YP_006545387.1| - 0.08 12.5 0.1 0.36 10.4 0.0 2.0 2 0 0 2 2 2 0 NACHT domain FtsK_SpoIIIE PF01580.13 gi|397780914|ref|YP_006545387.1| - 0.085 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|397780914|ref|YP_006545387.1| - 0.097 12.9 0.1 0.23 11.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|397780914|ref|YP_006545387.1| - 0.15 12.3 0.4 1.2 9.4 0.3 2.2 1 1 0 1 1 1 0 AAA domain DUF364 PF04016.7 gi|397780915|ref|YP_006545388.1| - 1e-31 109.2 0.0 1.4e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|397780915|ref|YP_006545388.1| - 2.5e-12 46.7 0.0 4.4e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) PhdYeFM_antitox PF02604.14 gi|397780916|ref|YP_006545389.1| - 7.2e-07 28.7 0.0 9.8e-07 28.2 0.0 1.3 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system GTP_EFTU_D2 PF03144.20 gi|590000689|ref|YP_006545390.2| - 1.7e-09 37.6 0.1 3.2e-09 36.7 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|590000689|ref|YP_006545390.2| - 1.1e-06 28.1 0.1 2.1e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Cytokin_check_N PF10407.4 gi|590000689|ref|YP_006545390.2| - 0.17 11.5 0.0 1.5 8.4 0.0 2.1 2 0 0 2 2 2 0 Cdc14 phosphatase binding protein N-terminus FecCD PF01032.13 gi|397780918|ref|YP_006545391.1| - 1.2e-90 303.5 34.5 1.6e-90 303.1 23.9 1.2 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|397780919|ref|YP_006545392.1| - 4.9e-32 111.1 0.0 6.8e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780919|ref|YP_006545392.1| - 1.9e-10 41.2 0.1 3.6e-06 27.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397780919|ref|YP_006545392.1| - 1.3e-08 34.3 0.1 2.7e-08 33.3 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|397780919|ref|YP_006545392.1| - 3e-06 26.6 0.0 6.7e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|397780919|ref|YP_006545392.1| - 5.9e-06 26.4 0.1 0.11 12.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|397780919|ref|YP_006545392.1| - 0.00038 20.8 0.0 0.00065 20.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|397780919|ref|YP_006545392.1| - 0.00095 19.1 0.1 0.0025 17.8 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.10 gi|397780919|ref|YP_006545392.1| - 0.0018 17.0 0.0 0.0027 16.4 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein ArgK PF03308.11 gi|397780919|ref|YP_006545392.1| - 0.0027 16.5 0.1 0.0049 15.6 0.1 1.3 1 0 0 1 1 1 1 ArgK protein T2SE PF00437.15 gi|397780919|ref|YP_006545392.1| - 0.0029 16.5 0.0 0.0065 15.4 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA PF00004.24 gi|397780919|ref|YP_006545392.1| - 0.003 17.7 0.0 0.27 11.4 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|397780919|ref|YP_006545392.1| - 0.0034 17.2 0.1 0.03 14.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain ABC_ATPase PF09818.4 gi|397780919|ref|YP_006545392.1| - 0.0038 15.8 0.7 0.42 9.1 0.1 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|397780919|ref|YP_006545392.1| - 0.0043 17.8 0.0 0.012 16.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|397780919|ref|YP_006545392.1| - 0.0048 16.6 0.0 0.0098 15.6 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|397780919|ref|YP_006545392.1| - 0.0055 16.1 0.0 0.18 11.2 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain ATP_bind_1 PF03029.12 gi|397780919|ref|YP_006545392.1| - 0.01 15.3 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|397780919|ref|YP_006545392.1| - 0.015 14.9 0.0 0.38 10.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|397780919|ref|YP_006545392.1| - 0.016 14.9 0.0 0.05 13.3 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|397780919|ref|YP_006545392.1| - 0.017 15.0 0.0 0.22 11.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|397780919|ref|YP_006545392.1| - 0.019 14.6 0.0 0.04 13.5 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|397780919|ref|YP_006545392.1| - 0.019 14.6 0.0 0.093 12.3 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_15 PF13175.1 gi|397780919|ref|YP_006545392.1| - 0.021 13.8 0.8 0.14 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|397780919|ref|YP_006545392.1| - 0.024 14.0 0.0 0.042 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|397780919|ref|YP_006545392.1| - 0.024 14.2 0.0 0.072 12.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain SbcCD_C PF13558.1 gi|397780919|ref|YP_006545392.1| - 0.025 14.4 0.1 0.2 11.5 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|397780919|ref|YP_006545392.1| - 0.028 13.5 0.0 0.051 12.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|397780919|ref|YP_006545392.1| - 0.041 13.0 0.0 0.079 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|397780919|ref|YP_006545392.1| - 0.052 13.1 0.0 0.088 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|397780919|ref|YP_006545392.1| - 0.054 12.3 0.1 0.12 11.1 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_28 PF13521.1 gi|397780919|ref|YP_006545392.1| - 0.06 13.3 0.1 0.15 12.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|397780919|ref|YP_006545392.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|397780919|ref|YP_006545392.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SRP54 PF00448.17 gi|397780919|ref|YP_006545392.1| - 0.12 11.7 0.0 0.27 10.6 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain HTH_1 PF00126.22 gi|397780920|ref|YP_006545393.1| - 0.011 15.4 0.1 4.3 7.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family RHH_1 PF01402.16 gi|397780920|ref|YP_006545393.1| - 0.16 11.9 0.5 2.7 8.0 0.1 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF4430 PF14478.1 gi|397780922|ref|YP_006545395.1| - 1e-47 160.0 20.6 1.7e-15 56.8 0.8 4.8 4 0 0 4 4 4 4 Domain of unknown function (DUF4430) PQQ_3 PF13570.1 gi|397780922|ref|YP_006545395.1| - 6.3e-44 147.0 42.9 7.3e-08 32.4 1.2 10.7 11 0 0 11 11 11 8 PQQ-like domain PQQ_2 PF13360.1 gi|397780922|ref|YP_006545395.1| - 2.8e-43 148.1 15.8 2.3e-19 69.7 0.5 4.7 3 1 2 5 5 5 3 PQQ-like domain PQQ PF01011.16 gi|397780922|ref|YP_006545395.1| - 1.6e-26 90.4 17.4 9e-05 21.8 0.2 8.7 8 0 0 8 8 8 7 PQQ enzyme repeat NifT PF06988.6 gi|397780922|ref|YP_006545395.1| - 7.1e-05 22.1 0.0 1.3 8.5 0.0 3.9 3 0 0 3 3 3 2 NifT/FixU protein Peripla_BP_2 PF01497.13 gi|397780923|ref|YP_006545396.1| - 1.4e-45 155.3 0.0 2.2e-45 154.6 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Prenyltrans_2 PF13249.1 gi|397780923|ref|YP_006545396.1| - 1.6e-33 115.4 5.2 5.6e-24 84.7 1.6 3.3 1 1 0 2 2 2 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|397780923|ref|YP_006545396.1| - 3.3e-23 81.7 0.8 2.1e-10 40.6 1.3 4.2 2 1 2 4 4 4 4 Prenyltransferase-like Prenyltrans PF00432.16 gi|397780923|ref|YP_006545396.1| - 8.7e-18 63.5 0.5 4.7e-05 22.8 0.1 4.7 4 0 0 4 4 4 4 Prenyltransferase and squalene oxidase repeat A2M_comp PF07678.9 gi|397780923|ref|YP_006545396.1| - 2.9e-06 26.7 0.0 0.091 11.9 0.0 4.0 3 1 1 4 4 4 2 A-macroglobulin complement component PQQ_2 PF13360.1 gi|590000690|ref|YP_009001421.1| - 1.7e-18 66.9 8.8 2e-10 40.5 2.8 2.9 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|590000690|ref|YP_009001421.1| - 1e-13 51.0 28.7 0.0022 18.2 0.5 7.9 6 2 2 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|590000690|ref|YP_009001421.1| - 4e-10 38.7 2.8 0.09 12.3 0.2 6.2 6 0 0 6 6 6 3 PQQ enzyme repeat WD40 PF00400.27 gi|590000690|ref|YP_009001421.1| - 1.1e-07 31.4 6.5 0.56 10.1 0.4 5.4 5 0 0 5 5 5 3 WD domain, G-beta repeat DUF1513 PF07433.6 gi|590000690|ref|YP_009001421.1| - 0.068 12.0 0.1 0.78 8.5 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1513) AP_endonuc_2 PF01261.19 gi|590000691|ref|YP_006545397.2| - 7.6e-19 67.8 3.1 1e-18 67.4 2.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel CbiQ PF02361.11 gi|397780926|ref|YP_006545399.1| - 3.6e-29 101.9 9.5 4.3e-29 101.6 6.6 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|590000692|ref|YP_009001422.1| - 3.2e-58 195.9 0.0 3.2e-30 105.1 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|590000692|ref|YP_009001422.1| - 1.1e-21 78.0 0.0 4.7e-07 30.0 0.0 4.1 4 0 0 4 4 4 3 AAA domain SMC_N PF02463.14 gi|590000692|ref|YP_009001422.1| - 5.7e-16 58.4 0.1 4.3e-07 29.3 0.0 3.6 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|590000692|ref|YP_009001422.1| - 1.2e-09 37.4 0.1 0.00051 19.5 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|590000692|ref|YP_009001422.1| - 6.3e-09 36.4 0.1 0.00047 20.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|590000692|ref|YP_009001422.1| - 3e-08 33.8 3.0 0.0062 16.5 0.4 2.9 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|590000692|ref|YP_009001422.1| - 5.5e-08 33.0 4.6 0.0044 17.1 0.0 3.9 3 2 0 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|590000692|ref|YP_009001422.1| - 1.4e-07 31.1 2.4 0.015 14.6 0.0 3.9 4 0 0 4 4 4 2 AAA domain AAA_17 PF13207.1 gi|590000692|ref|YP_009001422.1| - 3.1e-07 31.2 0.8 0.0038 18.0 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|590000692|ref|YP_009001422.1| - 6e-07 29.2 4.8 0.29 10.5 0.1 4.1 3 1 1 4 4 4 2 AAA-like domain SbcCD_C PF13558.1 gi|590000692|ref|YP_009001422.1| - 9.1e-07 28.7 0.5 0.056 13.3 0.1 3.4 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.10 gi|590000692|ref|YP_009001422.1| - 2e-06 27.6 0.2 0.016 14.8 0.0 2.7 2 0 0 2 2 2 2 NTPase MobB PF03205.9 gi|590000692|ref|YP_009001422.1| - 2.1e-06 27.4 0.5 0.03 14.0 0.1 2.7 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|590000692|ref|YP_009001422.1| - 2.2e-06 27.2 0.3 0.071 12.7 0.0 2.3 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 KaiC PF06745.8 gi|590000692|ref|YP_009001422.1| - 6.9e-06 25.3 0.1 0.098 11.7 0.0 3.0 3 0 0 3 3 3 2 KaiC AAA_18 PF13238.1 gi|590000692|ref|YP_009001422.1| - 6.9e-06 26.3 0.6 0.085 13.1 0.2 2.7 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|590000692|ref|YP_009001422.1| - 1.1e-05 25.0 4.9 0.039 13.7 0.1 3.8 4 0 0 4 4 4 2 Part of AAA domain NACHT PF05729.7 gi|590000692|ref|YP_009001422.1| - 1.1e-05 25.1 0.7 0.0077 15.9 0.0 2.7 2 0 0 2 2 2 1 NACHT domain Arch_ATPase PF01637.13 gi|590000692|ref|YP_009001422.1| - 1.2e-05 25.1 0.0 0.21 11.2 0.0 2.7 3 0 0 3 3 2 2 Archaeal ATPase T2SE PF00437.15 gi|590000692|ref|YP_009001422.1| - 1.3e-05 24.2 0.2 0.0024 16.8 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_30 PF13604.1 gi|590000692|ref|YP_009001422.1| - 0.00012 21.7 1.2 0.2 11.1 0.0 2.7 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|590000692|ref|YP_009001422.1| - 0.00015 21.6 0.0 0.8 9.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain ATP_bind_1 PF03029.12 gi|590000692|ref|YP_009001422.1| - 0.00018 21.1 1.0 0.4 10.1 0.1 2.3 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein AAA_24 PF13479.1 gi|590000692|ref|YP_009001422.1| - 0.0003 20.4 0.4 0.42 10.1 0.0 2.5 3 0 0 3 3 2 2 AAA domain DUF258 PF03193.11 gi|590000692|ref|YP_009001422.1| - 0.00032 19.9 0.1 0.32 10.1 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 PhoH PF02562.11 gi|590000692|ref|YP_009001422.1| - 0.00038 19.7 0.5 0.041 13.1 0.0 2.9 4 0 0 4 4 2 1 PhoH-like protein NB-ARC PF00931.17 gi|590000692|ref|YP_009001422.1| - 0.00055 18.8 0.3 0.3 9.9 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA PF00004.24 gi|590000692|ref|YP_009001422.1| - 0.00086 19.5 0.5 1.4 9.1 0.0 3.2 4 0 0 4 4 3 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|590000692|ref|YP_009001422.1| - 0.00095 18.9 0.1 0.18 11.5 0.0 2.7 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|590000692|ref|YP_009001422.1| - 0.00099 18.2 0.2 0.52 9.3 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin PduV-EutP PF10662.4 gi|590000692|ref|YP_009001422.1| - 0.001 18.5 0.1 1.5 8.3 0.0 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|590000692|ref|YP_009001422.1| - 0.0015 18.5 2.7 0.37 10.7 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.1 gi|590000692|ref|YP_009001422.1| - 0.0018 18.1 2.8 0.81 9.5 0.2 2.9 2 1 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|590000692|ref|YP_009001422.1| - 0.0019 17.3 0.4 0.91 8.6 0.0 3.0 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI APS_kinase PF01583.15 gi|590000692|ref|YP_009001422.1| - 0.0024 17.5 0.4 0.38 10.3 0.0 2.6 3 0 0 3 3 2 1 Adenylylsulphate kinase cobW PF02492.14 gi|590000692|ref|YP_009001422.1| - 0.0029 17.0 3.7 0.74 9.2 0.0 3.1 4 0 0 4 4 4 2 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|590000692|ref|YP_009001422.1| - 0.0043 17.5 0.8 0.29 11.6 0.0 2.4 2 0 0 2 2 2 1 Miro-like protein SRP54 PF00448.17 gi|590000692|ref|YP_009001422.1| - 0.0045 16.4 0.5 0.7 9.2 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.13 gi|590000692|ref|YP_009001422.1| - 0.0055 16.1 1.2 0.7 9.3 0.0 3.2 3 0 0 3 3 3 1 FtsK/SpoIIIE family RNA_helicase PF00910.17 gi|590000692|ref|YP_009001422.1| - 0.0065 16.6 0.1 4.3 7.5 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Sigma54_activ_2 PF14532.1 gi|590000692|ref|YP_009001422.1| - 0.01 15.8 0.0 0.64 10.0 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain RecA PF00154.16 gi|590000692|ref|YP_009001422.1| - 0.011 14.8 0.1 4.2 6.3 0.0 2.3 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_15 PF13175.1 gi|590000692|ref|YP_009001422.1| - 0.014 14.4 0.0 0.45 9.5 0.0 2.8 3 0 0 3 3 3 0 AAA ATPase domain Zot PF05707.7 gi|590000692|ref|YP_009001422.1| - 0.017 14.5 1.4 11 5.3 0.0 3.5 4 0 0 4 4 3 0 Zonular occludens toxin (Zot) DEAD PF00270.24 gi|590000692|ref|YP_009001422.1| - 0.018 14.5 0.4 1.4 8.4 0.0 3.1 3 1 0 3 3 3 0 DEAD/DEAH box helicase IstB_IS21 PF01695.12 gi|590000692|ref|YP_009001422.1| - 0.048 13.0 1.7 0.7 9.2 0.0 2.9 4 0 0 4 4 2 0 IstB-like ATP binding protein ABC_ATPase PF09818.4 gi|590000692|ref|YP_009001422.1| - 0.096 11.2 6.8 5.1 5.5 0.1 4.1 4 1 0 4 4 4 0 Predicted ATPase of the ABC class PRK PF00485.13 gi|590000692|ref|YP_009001422.1| - 0.1 12.1 0.7 3.6 7.0 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_13 PF13166.1 gi|590000692|ref|YP_009001422.1| - 0.15 10.4 0.1 1.1 7.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|590000692|ref|YP_009001422.1| - 0.28 9.8 0.0 0.42 9.2 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit DUF2075 PF09848.4 gi|590000692|ref|YP_009001422.1| - 0.59 9.0 1.4 2.2 7.1 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Ilm1 PF10311.4 gi|397780927|ref|YP_006545400.1| - 0.1 12.1 0.3 0.1 12.1 0.2 2.5 1 1 0 2 2 2 0 Increased loss of mitochondrial DNA protein 1 Fst_toxin PF13955.1 gi|397780927|ref|YP_006545400.1| - 0.22 11.2 0.3 0.22 11.2 0.2 3.0 3 0 0 3 3 3 0 Toxin Fst, type I toxin-antitoxin system DUF3530 PF12048.3 gi|397780928|ref|YP_006545401.1| - 0.038 12.9 1.7 0.062 12.2 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) Hist_deacetyl PF00850.14 gi|397780929|ref|YP_006545402.1| - 3.1e-76 256.6 0.0 4e-76 256.2 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain AdoHcyase PF05221.12 gi|397780930|ref|YP_006545403.1| - 5.5e-52 176.3 0.0 6.8e-52 176.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|397780930|ref|YP_006545403.1| - 7.6e-51 172.1 0.8 1.6e-50 171.1 0.1 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|397780930|ref|YP_006545403.1| - 2e-09 37.0 0.0 4.1e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|397780930|ref|YP_006545403.1| - 1e-08 34.5 0.1 1.7e-08 33.7 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|397780930|ref|YP_006545403.1| - 0.0021 18.0 0.0 0.0049 16.8 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|397780930|ref|YP_006545403.1| - 0.018 14.6 0.7 0.053 13.0 0.2 2.0 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Rad50_zn_hook PF04423.9 gi|397780932|ref|YP_006545405.1| - 0.055 12.9 0.3 0.055 12.9 0.2 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif DZR PF12773.2 gi|397780932|ref|YP_006545405.1| - 0.064 13.0 13.0 0.13 12.0 7.2 2.5 2 1 1 3 3 3 0 Double zinc ribbon FdhE PF04216.7 gi|397780932|ref|YP_006545405.1| - 0.19 11.3 7.9 0.22 11.1 5.5 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.1 gi|397780932|ref|YP_006545405.1| - 0.28 10.4 13.1 0.18 11.0 0.9 3.6 3 1 0 3 3 3 0 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|397780932|ref|YP_006545405.1| - 0.53 10.3 8.2 0.075 13.0 0.6 2.5 1 1 1 2 2 2 0 DnaJ central domain Zn_Tnp_IS1595 PF12760.2 gi|397780932|ref|YP_006545405.1| - 1.5 8.7 22.0 4.3 7.2 7.3 2.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|397780932|ref|YP_006545405.1| - 1.8 8.5 21.2 2.8 7.9 0.1 4.1 3 1 0 3 3 3 0 Zinc ribbon domain HypA PF01155.14 gi|397780932|ref|YP_006545405.1| - 1.9 8.2 9.8 1.5 8.5 1.1 2.8 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family SBP_bac_11 PF13531.1 gi|397780934|ref|YP_006545407.1| - 1.3e-53 182.0 0.3 1.5e-53 181.8 0.2 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|397780934|ref|YP_006545407.1| - 1.6e-16 60.9 1.2 6.8e-15 55.5 0.9 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|397780934|ref|YP_006545407.1| - 7.5e-06 25.8 0.3 0.046 13.4 0.1 2.1 1 1 1 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|397780934|ref|YP_006545407.1| - 3.1e-05 22.9 0.0 5e-05 22.3 0.0 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like_2 PF12849.2 gi|397780934|ref|YP_006545407.1| - 0.00015 21.3 1.6 0.0003 20.3 1.1 1.4 1 0 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.17 gi|397780935|ref|YP_006545408.1| - 3.8e-20 72.1 13.2 3.8e-20 72.1 9.2 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Otopetrin PF03189.8 gi|397780935|ref|YP_006545408.1| - 0.38 9.7 3.5 1.4 7.8 0.0 2.7 3 1 0 3 3 3 0 Otopetrin ABC_tran PF00005.22 gi|397780936|ref|YP_006545409.1| - 6.6e-35 120.3 0.0 1e-34 119.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397780936|ref|YP_006545409.1| - 1e-09 38.8 0.0 0.0001 22.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|397780936|ref|YP_006545409.1| - 1.4e-05 24.5 0.1 2.5e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|397780936|ref|YP_006545409.1| - 1.7e-05 24.1 0.0 0.12 11.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|397780936|ref|YP_006545409.1| - 2.4e-05 24.7 0.0 3.5e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|397780936|ref|YP_006545409.1| - 0.00043 19.4 0.0 0.023 13.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|397780936|ref|YP_006545409.1| - 0.00045 20.2 3.0 0.0057 16.6 2.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|397780936|ref|YP_006545409.1| - 0.0022 17.1 0.1 0.0037 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NACHT PF05729.7 gi|397780936|ref|YP_006545409.1| - 0.0029 17.2 0.0 1.3 8.6 0.0 2.2 2 0 0 2 2 2 2 NACHT domain ABC_ATPase PF09818.4 gi|397780936|ref|YP_006545409.1| - 0.0044 15.6 0.0 0.19 10.2 0.0 2.7 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|397780936|ref|YP_006545409.1| - 0.0046 16.4 0.1 1.2 8.4 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_19 PF13245.1 gi|397780936|ref|YP_006545409.1| - 0.0092 15.7 0.6 0.28 10.9 0.0 2.5 2 1 0 2 2 2 1 Part of AAA domain ATP-synt_ab PF00006.20 gi|397780936|ref|YP_006545409.1| - 0.021 14.3 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF2813 PF11398.3 gi|397780936|ref|YP_006545409.1| - 0.031 13.3 0.0 0.042 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_25 PF13481.1 gi|397780936|ref|YP_006545409.1| - 0.045 13.1 0.1 0.79 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|397780936|ref|YP_006545409.1| - 0.049 13.2 0.0 0.6 9.6 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|397780936|ref|YP_006545409.1| - 0.051 13.5 0.8 25 4.8 0.1 2.9 2 1 1 3 3 3 0 AAA domain Dynamin_N PF00350.18 gi|397780936|ref|YP_006545409.1| - 0.067 13.0 0.1 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Dynamin family HAD PF12710.2 gi|397780936|ref|YP_006545409.1| - 0.07 13.2 0.0 0.079 13.1 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase MMR_HSR1 PF01926.18 gi|397780936|ref|YP_006545409.1| - 0.08 12.9 0.3 0.12 12.3 0.2 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|397780936|ref|YP_006545409.1| - 0.08 13.0 0.7 0.77 9.9 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|397780936|ref|YP_006545409.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|397780936|ref|YP_006545409.1| - 0.14 12.0 1.2 2 8.3 0.2 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit OGG_N PF07934.7 gi|397780937|ref|YP_006545410.1| - 3e-25 88.4 0.0 5.5e-25 87.6 0.0 1.4 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|397780937|ref|YP_006545410.1| - 6e-11 42.5 0.0 9.7e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Radical_SAM PF04055.16 gi|397780938|ref|YP_006545411.1| - 3e-21 76.3 0.1 4.6e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|397780938|ref|YP_006545411.1| - 3.7e-05 23.7 0.0 7e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|397780938|ref|YP_006545411.1| - 0.00037 20.6 0.0 0.00076 19.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Dala_Dala_lig_C PF07478.8 gi|397780939|ref|YP_006545412.1| - 3.3e-27 95.1 0.0 4.7e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Methyltransf_18 PF12847.2 gi|397780939|ref|YP_006545412.1| - 1.3e-17 64.3 0.1 5.6e-17 62.3 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397780939|ref|YP_006545412.1| - 1.4e-16 60.4 0.0 3.2e-16 59.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|397780939|ref|YP_006545412.1| - 6.9e-16 58.5 0.0 1.6e-15 57.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain ATP-grasp_4 PF13535.1 gi|397780939|ref|YP_006545412.1| - 1.1e-14 54.6 0.0 5.9e-14 52.2 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain Methyltransf_25 PF13649.1 gi|397780939|ref|YP_006545412.1| - 6.4e-14 52.1 0.0 3.8e-13 49.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397780939|ref|YP_006545412.1| - 2.7e-12 46.7 0.1 1.9e-11 43.9 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|397780939|ref|YP_006545412.1| - 6.5e-12 45.0 0.0 5.7e-11 41.9 0.0 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|397780939|ref|YP_006545412.1| - 5e-09 36.2 0.0 1.1e-08 35.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|397780939|ref|YP_006545412.1| - 1.3e-07 31.0 0.0 2.1e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB ATPgrasp_Ter PF15632.1 gi|397780939|ref|YP_006545412.1| - 1.2e-06 27.5 0.0 0.013 14.2 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Methyltransf_12 PF08242.7 gi|397780939|ref|YP_006545412.1| - 1.1e-05 25.8 0.0 3.5e-05 24.1 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|397780939|ref|YP_006545412.1| - 1.9e-05 24.1 0.0 3.2e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|397780939|ref|YP_006545412.1| - 0.0013 17.7 0.0 0.0022 17.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|397780939|ref|YP_006545412.1| - 0.0022 17.1 0.0 0.0033 16.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|397780939|ref|YP_006545412.1| - 0.0028 17.1 0.0 0.0074 15.8 0.0 1.6 2 0 0 2 2 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ATP-grasp_3 PF02655.9 gi|397780939|ref|YP_006545412.1| - 0.0029 17.5 0.0 0.015 15.1 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain MetW PF07021.7 gi|397780939|ref|YP_006545412.1| - 0.013 14.8 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW TTL PF03133.10 gi|397780939|ref|YP_006545412.1| - 0.016 14.1 0.0 0.029 13.3 0.0 1.4 1 0 0 1 1 1 0 Tubulin-tyrosine ligase family Methyltransf_4 PF02390.12 gi|397780939|ref|YP_006545412.1| - 0.21 10.6 0.0 0.39 9.7 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase zinc_ribbon_6 PF14599.1 gi|397780940|ref|YP_006545413.1| - 0.00056 19.6 3.1 0.019 14.7 2.8 2.1 1 1 1 2 2 2 1 Zinc-ribbon C1_1 PF00130.17 gi|397780940|ref|YP_006545413.1| - 0.05 13.3 1.3 0.074 12.7 0.9 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|397780940|ref|YP_006545413.1| - 0.67 9.9 5.1 1 9.3 3.6 1.3 1 0 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|397780940|ref|YP_006545413.1| - 1.3 8.5 4.7 3.4 7.1 3.3 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|397780940|ref|YP_006545413.1| - 1.8 8.3 5.1 3.6 7.3 2.4 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain ABC2_membrane PF01061.19 gi|397780941|ref|YP_006545414.1| - 7.9e-25 87.2 21.6 7.9e-25 87.2 15.0 1.7 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|397780941|ref|YP_006545414.1| - 5.3e-08 32.2 32.0 6.6e-08 31.9 22.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein Caveolin PF01146.12 gi|397780941|ref|YP_006545414.1| - 4.4 6.8 6.9 5.5 6.5 3.0 2.5 1 1 0 2 2 2 0 Caveolin ABC_tran PF00005.22 gi|397780942|ref|YP_006545415.1| - 3.5e-18 66.2 0.0 7.8e-18 65.0 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|397780942|ref|YP_006545415.1| - 6.8e-11 42.6 0.1 8.6e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|397780942|ref|YP_006545415.1| - 0.062 12.3 0.0 0.082 11.9 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain TOBE PF03459.12 gi|397780943|ref|YP_006545416.1| - 5.6e-20 71.2 0.5 6.2e-20 71.0 0.4 1.0 1 0 0 1 1 1 1 TOBE domain TOBE_3 PF12857.2 gi|397780943|ref|YP_006545416.1| - 0.0019 17.9 0.0 0.011 15.5 0.0 1.9 1 1 0 1 1 1 1 TOBE-like domain DUF4244 PF14029.1 gi|397780943|ref|YP_006545416.1| - 0.12 11.4 0.6 2.3 7.3 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF4244) MCH PF02289.11 gi|397780944|ref|YP_006545417.1| - 3.4e-132 440.2 0.9 3.8e-132 440.0 0.7 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) AAA_16 PF13191.1 gi|397780945|ref|YP_006545418.1| - 1.9e-10 41.0 0.0 4e-10 39.9 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|397780945|ref|YP_006545418.1| - 1.4e-07 31.7 0.0 2.7e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|397780945|ref|YP_006545418.1| - 6.4e-07 29.0 0.5 2.7e-06 27.0 0.1 2.3 2 1 0 2 2 2 1 CDC6, C terminal AAA_33 PF13671.1 gi|397780945|ref|YP_006545418.1| - 0.003 17.4 0.0 0.0086 15.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|397780945|ref|YP_006545418.1| - 0.0035 17.0 0.2 0.076 12.7 0.1 2.4 2 0 0 2 2 2 1 Part of AAA domain Arch_ATPase PF01637.13 gi|397780945|ref|YP_006545418.1| - 0.011 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|397780945|ref|YP_006545418.1| - 0.042 14.0 0.0 0.072 13.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|397780945|ref|YP_006545418.1| - 0.066 12.0 0.0 0.13 11.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.1 gi|397780945|ref|YP_006545418.1| - 0.076 12.9 0.1 1.3 8.9 0.0 2.3 1 1 1 2 2 2 0 AAA domain NACHT PF05729.7 gi|397780945|ref|YP_006545418.1| - 0.092 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain DUF3615 PF12274.3 gi|397780945|ref|YP_006545418.1| - 0.14 12.5 0.2 16 5.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3615) AAA_11 PF13086.1 gi|397780945|ref|YP_006545418.1| - 0.15 11.6 0.0 0.21 11.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF4428 PF14471.1 gi|397780946|ref|YP_006545419.1| - 0.16 11.7 2.3 0.26 11.0 1.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) Beta_helix PF13229.1 gi|397780948|ref|YP_006545421.1| - 7.9e-10 38.7 3.8 5.4e-05 22.9 0.1 3.7 1 1 3 4 4 4 4 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|397780948|ref|YP_006545421.1| - 1.1e-08 35.4 2.1 4.4e-08 33.5 0.7 2.3 2 1 0 2 2 2 1 Pectate lyase superfamily protein Pectate_lyase_3 PF12708.2 gi|397780949|ref|YP_006545422.1| - 8.5e-11 42.4 0.8 1.5e-08 35.0 0.1 2.8 2 1 0 3 3 3 2 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|397780949|ref|YP_006545422.1| - 2.9e-08 33.6 9.7 0.00041 20.1 0.5 3.4 2 1 1 3 3 3 2 Right handed beta helix region DUF2749 PF10907.3 gi|397780949|ref|YP_006545422.1| - 0.2 11.5 1.3 0.34 10.7 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) CARDB PF07705.6 gi|397780950|ref|YP_006545423.1| - 2.6e-31 107.6 0.2 5.6e-15 55.2 0.0 3.2 3 0 0 3 3 3 2 CARDB Beta_helix PF13229.1 gi|397780950|ref|YP_006545423.1| - 2.9e-11 43.3 13.7 2.2e-05 24.2 2.7 3.8 2 2 0 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|397780950|ref|YP_006545423.1| - 4.7e-05 23.6 5.3 4.7e-05 23.6 3.7 3.5 3 1 0 4 4 4 1 Pectate lyase superfamily protein FG-GAP PF01839.18 gi|397780950|ref|YP_006545423.1| - 0.0062 16.1 4.0 11 5.8 0.2 4.7 4 0 0 4 4 4 1 FG-GAP repeat EF-hand_8 PF13833.1 gi|397780950|ref|YP_006545423.1| - 0.037 13.6 0.3 7.3 6.3 0.0 2.4 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_5 PF13202.1 gi|397780950|ref|YP_006545423.1| - 2.3 7.7 5.7 12 5.4 0.1 2.6 3 0 0 3 3 3 0 EF hand Polysacc_synt PF01943.12 gi|397780951|ref|YP_006545424.1| - 2.9e-11 43.1 31.5 2.9e-11 43.1 21.9 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|397780951|ref|YP_006545424.1| - 7.6e-09 35.3 52.7 0.0001 21.8 13.4 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|397780951|ref|YP_006545424.1| - 1.5e-05 24.8 9.4 1.5e-05 24.8 6.5 3.9 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF2206 PF09971.4 gi|397780952|ref|YP_006545425.1| - 4.8e-107 357.9 0.0 4.8e-107 357.9 0.0 2.4 2 1 0 2 2 2 1 Predicted membrane protein (DUF2206) DUF1616 PF07760.6 gi|397780952|ref|YP_006545425.1| - 1.9e-42 145.3 17.2 1.9e-42 145.3 12.0 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF1616) PMT_2 PF13231.1 gi|397780952|ref|YP_006545425.1| - 0.00028 20.8 12.4 0.00028 20.8 8.6 4.9 4 2 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_1 PF00534.15 gi|397780954|ref|YP_006545426.1| - 1.2e-23 83.4 0.0 2e-23 82.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397780954|ref|YP_006545426.1| - 5e-15 55.8 0.0 8.7e-15 55.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|397780954|ref|YP_006545426.1| - 1.6e-12 47.8 0.0 4.1e-12 46.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|397780954|ref|YP_006545426.1| - 1.7e-07 31.3 0.0 3.6e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|397780954|ref|YP_006545426.1| - 1.7e-06 27.8 0.1 3.1e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|397780954|ref|YP_006545426.1| - 5.3e-06 26.3 0.0 8.6e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_hydro_4 PF02056.11 gi|397780954|ref|YP_006545426.1| - 0.11 11.8 0.1 0.22 10.8 0.1 1.4 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase Beta_helix PF13229.1 gi|397780955|ref|YP_006545428.1| - 2.1e-12 47.0 8.0 0.00015 21.5 0.0 3.3 1 1 2 3 3 3 3 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|397780955|ref|YP_006545428.1| - 7.1e-08 32.8 6.7 6.2e-06 26.5 2.4 2.7 1 1 1 2 2 2 2 Pectate lyase superfamily protein Glycos_transf_1 PF00534.15 gi|397780956|ref|YP_006545429.1| - 3.5e-32 111.1 0.0 7e-32 110.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|397780956|ref|YP_006545429.1| - 1.8e-22 80.1 0.5 7.7e-22 78.1 0.3 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|397780956|ref|YP_006545429.1| - 3.4e-17 62.8 0.0 7.9e-17 61.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|397780956|ref|YP_006545429.1| - 3.6e-16 59.3 0.1 1.3e-15 57.6 0.1 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|397780956|ref|YP_006545429.1| - 6.2e-10 39.2 0.0 1.5e-09 37.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|397780956|ref|YP_006545429.1| - 2.2e-08 33.9 0.0 0.00028 20.4 0.0 2.2 2 0 0 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|397780956|ref|YP_006545429.1| - 0.011 15.6 0.1 0.027 14.3 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_N PF04413.11 gi|397780956|ref|YP_006545429.1| - 0.17 11.0 0.0 0.28 10.3 0.0 1.3 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PGA_cap PF09587.5 gi|397780957|ref|YP_006545430.1| - 1.5e-66 224.3 0.0 1.8e-66 224.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap Epimerase_2 PF02350.14 gi|397780958|ref|YP_006545431.1| - 1.3e-09 37.2 0.0 1.4e-09 37.1 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Epimerase PF01370.16 gi|397780959|ref|YP_006545432.1| - 2.2e-43 148.4 0.1 2.7e-43 148.0 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|397780959|ref|YP_006545432.1| - 4.5e-16 58.5 0.2 9.5e-13 47.6 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.12 gi|397780959|ref|YP_006545432.1| - 3e-14 52.6 0.0 3.4e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|397780959|ref|YP_006545432.1| - 7.8e-14 51.0 0.0 1.4e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|397780959|ref|YP_006545432.1| - 2.6e-10 40.5 0.0 3.8e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|397780959|ref|YP_006545432.1| - 1.9e-06 27.0 0.0 0.00015 20.7 0.0 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|397780959|ref|YP_006545432.1| - 0.00026 20.9 0.1 0.014 15.3 0.1 2.2 1 1 1 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|397780959|ref|YP_006545432.1| - 0.084 12.5 0.1 0.49 10.0 0.1 2.0 1 1 1 2 2 2 0 KR domain NmrA PF05368.8 gi|397780959|ref|YP_006545432.1| - 0.085 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family NAD_binding_2 PF03446.10 gi|397780959|ref|YP_006545432.1| - 0.17 11.6 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Methyltransf_23 PF13489.1 gi|590000693|ref|YP_009001423.1| - 1.6e-14 53.9 0.0 2.2e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|590000693|ref|YP_009001423.1| - 2.8e-07 30.9 0.0 4.6e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|590000693|ref|YP_009001423.1| - 5.5e-07 30.1 0.0 9.1e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NAS PF03059.11 gi|590000693|ref|YP_009001423.1| - 2e-05 23.8 0.2 3.6e-05 23.0 0.0 1.4 2 0 0 2 2 2 1 Nicotianamine synthase protein Methyltransf_12 PF08242.7 gi|590000693|ref|YP_009001423.1| - 4.5e-05 23.8 0.1 8.8e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|590000693|ref|YP_009001423.1| - 0.00012 21.6 0.2 0.00019 21.0 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Epimerase PF01370.16 gi|397780961|ref|YP_006545434.1| - 8.5e-50 169.3 0.0 1e-49 169.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|397780961|ref|YP_006545434.1| - 6.5e-16 58.0 0.0 5.2e-13 48.5 0.0 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|397780961|ref|YP_006545434.1| - 1.5e-15 56.6 0.0 2.8e-15 55.7 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|397780961|ref|YP_006545434.1| - 1e-10 41.0 0.0 2.3e-10 39.8 0.0 1.5 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|397780961|ref|YP_006545434.1| - 3.2e-07 30.5 0.0 4.5e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|397780961|ref|YP_006545434.1| - 5.3e-07 29.7 0.0 8.8e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_4 PF07993.7 gi|397780961|ref|YP_006545434.1| - 1.6e-06 27.2 0.0 3.3e-05 22.9 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.8 gi|397780961|ref|YP_006545434.1| - 1.7e-06 27.4 0.0 3.5e-06 26.4 0.0 1.6 2 0 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|397780961|ref|YP_006545434.1| - 0.0012 18.5 0.0 0.0025 17.4 0.0 1.6 1 1 0 1 1 1 1 KR domain TrkA_N PF02254.13 gi|397780961|ref|YP_006545434.1| - 0.0017 18.3 0.0 0.0027 17.6 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain ELFV_dehydrog PF00208.16 gi|397780961|ref|YP_006545434.1| - 0.11 12.0 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Glycos_transf_1 PF00534.15 gi|397780962|ref|YP_006545435.1| - 1.3e-18 67.0 0.0 2.2e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397780962|ref|YP_006545435.1| - 2.3e-18 66.6 0.0 4e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|397780962|ref|YP_006545435.1| - 8.9e-17 61.6 0.0 1.4e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|397780962|ref|YP_006545435.1| - 6.2e-08 32.5 0.8 1.2e-07 31.5 0.3 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|397780962|ref|YP_006545435.1| - 0.00042 20.5 0.0 0.00092 19.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|397780962|ref|YP_006545435.1| - 0.00093 19.0 0.3 0.0097 15.7 0.2 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like GCR1_C PF12550.3 gi|397780962|ref|YP_006545435.1| - 0.056 13.3 0.3 0.18 11.7 0.2 1.8 1 0 0 1 1 1 0 Transcriptional activator of glycolytic enzymes Pectate_lyase_3 PF12708.2 gi|397780963|ref|YP_006545436.1| - 1.6e-11 44.7 3.9 3.2e-11 43.7 0.5 2.3 1 1 0 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|397780963|ref|YP_006545436.1| - 5.5e-06 26.2 10.4 0.026 14.2 7.2 3.0 1 1 0 1 1 1 1 Right handed beta helix region DegT_DnrJ_EryC1 PF01041.12 gi|397780965|ref|YP_006545438.1| - 4.2e-117 391.2 0.0 4.9e-117 391.0 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|397780965|ref|YP_006545438.1| - 1.7e-07 30.6 0.0 2.5e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|397780965|ref|YP_006545438.1| - 4.6e-05 21.8 0.0 6.9e-05 21.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|397780965|ref|YP_006545438.1| - 0.0039 15.9 0.0 0.0042 15.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V LamB_YcsF PF03746.11 gi|397780965|ref|YP_006545438.1| - 0.016 14.3 0.0 0.03 13.4 0.0 1.4 1 0 0 1 1 1 0 LamB/YcsF family Epimerase PF01370.16 gi|397780966|ref|YP_006545439.1| - 9.8e-67 224.8 0.0 1.2e-66 224.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|397780966|ref|YP_006545439.1| - 1.9e-23 82.6 0.0 2.5e-23 82.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|397780966|ref|YP_006545439.1| - 7.3e-21 74.3 0.0 1.9e-20 72.9 0.0 1.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|397780966|ref|YP_006545439.1| - 7.1e-20 70.9 0.6 1.5e-18 66.6 0.4 2.2 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|397780966|ref|YP_006545439.1| - 6.9e-18 64.5 0.0 9.4e-18 64.0 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|397780966|ref|YP_006545439.1| - 4.9e-08 33.1 0.0 7.4e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Epimerase_Csub PF13950.1 gi|397780966|ref|YP_006545439.1| - 7.2e-06 25.8 0.0 1.4e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit adh_short PF00106.20 gi|397780966|ref|YP_006545439.1| - 0.00075 19.4 0.0 0.0017 18.2 0.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase Saccharop_dh PF03435.13 gi|397780966|ref|YP_006545439.1| - 0.00077 18.5 0.0 0.0011 17.9 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|397780966|ref|YP_006545439.1| - 0.0013 17.9 0.0 0.0019 17.5 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Glycos_transf_1 PF00534.15 gi|397780967|ref|YP_006545440.1| - 8.7e-28 96.8 0.0 1.2e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397780967|ref|YP_006545440.1| - 4.3e-20 72.2 0.0 9.2e-20 71.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|397780967|ref|YP_006545440.1| - 9.2e-20 70.9 0.0 1.5e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|397780967|ref|YP_006545440.1| - 1e-12 48.5 0.0 7.6e-12 45.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|397780967|ref|YP_006545440.1| - 1.4e-11 44.4 0.0 2.2e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|397780967|ref|YP_006545440.1| - 3.7e-10 39.9 0.1 1e-09 38.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 PEGA PF08308.6 gi|397780968|ref|YP_006545441.1| - 3.1e-16 58.9 0.0 9.6e-16 57.3 0.0 1.9 1 0 0 1 1 1 1 PEGA domain Beta_helix PF13229.1 gi|397780968|ref|YP_006545441.1| - 2.1e-07 30.8 9.9 0.0045 16.7 0.9 2.3 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|397780968|ref|YP_006545441.1| - 1.2e-06 28.8 5.7 1.2e-05 25.5 2.5 2.8 1 1 1 2 2 2 1 Pectate lyase superfamily protein GATase_7 PF13537.1 gi|397780970|ref|YP_006545443.1| - 7.2e-11 41.8 0.1 1.3e-10 41.0 0.1 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|397780970|ref|YP_006545443.1| - 1.6e-06 28.0 0.0 2.7e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain Peptidase_C13 PF01650.13 gi|397780970|ref|YP_006545443.1| - 0.045 13.0 0.1 0.058 12.6 0.1 1.3 1 0 0 1 1 1 0 Peptidase C13 family SGIII PF15467.1 gi|397780970|ref|YP_006545443.1| - 0.1 11.6 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Secretogranin-3 DUF3700 PF12481.3 gi|397780970|ref|YP_006545443.1| - 0.18 11.0 1.1 0.23 10.6 0.1 1.6 2 0 0 2 2 2 0 Aluminium induced protein Polysacc_synt PF01943.12 gi|397780972|ref|YP_006545445.1| - 6.5e-32 110.8 23.5 6.5e-32 110.8 16.3 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|397780972|ref|YP_006545445.1| - 9.2e-18 64.4 56.1 3.2e-14 52.9 13.6 3.4 3 0 0 3 3 3 3 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|397780972|ref|YP_006545445.1| - 3.2e-13 49.7 25.3 3.2e-13 49.7 17.6 3.2 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|397780972|ref|YP_006545445.1| - 5e-07 28.5 27.8 0.00071 18.1 11.0 2.2 2 0 0 2 2 2 2 MviN-like protein PMT_2 PF13231.1 gi|397780973|ref|YP_006545446.1| - 0.0011 18.8 22.4 0.0011 18.8 15.5 4.1 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF3963 PF13124.1 gi|397780973|ref|YP_006545446.1| - 0.0014 18.3 0.1 0.01 15.6 0.0 2.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3963) Glycos_transf_1 PF00534.15 gi|397780974|ref|YP_006545447.1| - 4.7e-27 94.4 0.0 6.9e-27 93.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397780974|ref|YP_006545447.1| - 1e-22 80.7 0.1 1.7e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|397780974|ref|YP_006545447.1| - 2.8e-14 53.1 0.0 5.1e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|397780974|ref|YP_006545447.1| - 7.8e-10 39.1 0.0 1.3e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|397780974|ref|YP_006545447.1| - 0.00014 21.6 0.1 0.00032 20.4 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 DUF1972 PF09314.6 gi|397780974|ref|YP_006545447.1| - 0.0019 17.6 0.0 0.0035 16.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1972) Glycos_transf_1 PF00534.15 gi|397780975|ref|YP_006545448.1| - 6.2e-30 103.8 0.0 9.6e-30 103.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397780975|ref|YP_006545448.1| - 7.4e-17 61.7 0.0 2.1e-16 60.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|397780975|ref|YP_006545448.1| - 2.6e-09 37.2 0.0 5.2e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|397780976|ref|YP_006545449.1| - 4.8e-27 94.4 0.0 9.6e-27 93.4 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|397780976|ref|YP_006545449.1| - 4.4e-18 65.9 0.0 1e-17 64.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|397780976|ref|YP_006545449.1| - 2.9e-15 56.4 0.0 4e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|397780976|ref|YP_006545449.1| - 1.6e-13 50.9 0.0 3.9e-13 49.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|397780976|ref|YP_006545449.1| - 7.1e-08 32.3 0.0 1.3e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|397780976|ref|YP_006545449.1| - 1.1e-05 25.5 0.0 2.5e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|397780976|ref|YP_006545449.1| - 5.2e-05 21.9 0.0 0.0039 15.7 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase family 20 DDE_3 PF13358.1 gi|397780977|ref|YP_006545450.1| - 5.5e-17 61.8 0.0 7.9e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|397780978|ref|YP_006545451.1| - 6.6e-23 81.0 0.1 1.1e-22 80.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|397780978|ref|YP_006545451.1| - 3.5e-11 43.7 0.1 8.1e-11 42.5 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_23 PF13384.1 gi|397780978|ref|YP_006545451.1| - 3.1e-06 26.6 0.0 7.8e-05 22.1 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain FA_FANCE PF11510.3 gi|397780978|ref|YP_006545451.1| - 0.12 11.4 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Fanconi Anaemia group E protein FANCE DUF98 PF01947.11 gi|397780979|ref|YP_006545452.1| - 5.2e-25 87.9 0.0 8.2e-25 87.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF98) GHMP_kinases_N PF00288.21 gi|397780979|ref|YP_006545452.1| - 3.4e-08 33.4 0.4 8.3e-08 32.1 0.2 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|397780979|ref|YP_006545452.1| - 9.3e-08 32.1 0.0 2.5e-07 30.8 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal UTRA PF07702.8 gi|397780979|ref|YP_006545452.1| - 0.00014 21.4 0.6 0.022 14.3 0.0 2.4 2 0 0 2 2 2 2 UTRA domain Antibiotic_NAT PF02522.9 gi|397780979|ref|YP_006545452.1| - 0.1 11.7 0.0 0.64 9.2 0.0 2.0 2 0 0 2 2 2 0 Aminoglycoside 3-N-acetyltransferase PhosphMutase PF10143.4 gi|397780980|ref|YP_006545453.1| - 7.4e-54 181.9 0.0 1e-53 181.5 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|397780980|ref|YP_006545453.1| - 1e-46 159.3 0.0 1.3e-46 159.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|397780980|ref|YP_006545453.1| - 0.022 14.1 0.0 0.048 12.9 0.0 1.6 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase Epimerase PF01370.16 gi|397780981|ref|YP_006545454.1| - 2.4e-44 151.5 0.0 3e-44 151.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|397780981|ref|YP_006545454.1| - 1.3e-15 57.0 0.0 2.2e-15 56.3 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|397780981|ref|YP_006545454.1| - 1.6e-15 56.6 0.0 1.9e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|397780981|ref|YP_006545454.1| - 9.7e-15 54.1 0.1 4.6e-11 42.1 0.0 2.1 1 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|397780981|ref|YP_006545454.1| - 2.7e-14 52.7 0.0 3.3e-13 49.2 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|397780981|ref|YP_006545454.1| - 9.6e-10 38.7 0.0 1.6e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|397780981|ref|YP_006545454.1| - 2.1e-05 24.5 0.2 7.7e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|397780981|ref|YP_006545454.1| - 0.018 14.7 0.2 0.034 13.8 0.1 1.5 1 1 0 1 1 1 0 KR domain NmrA PF05368.8 gi|397780981|ref|YP_006545454.1| - 0.019 14.1 0.0 0.031 13.5 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family Fasciclin PF02469.17 gi|397780982|ref|YP_006545455.1| - 2.1e-33 115.0 5.1 6.2e-33 113.5 3.5 1.8 1 1 0 1 1 1 1 Fasciclin domain DUF4098 PF13345.1 gi|397780982|ref|YP_006545455.1| - 0.0093 15.8 1.3 0.0093 15.8 0.9 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4098) DUF493 PF04359.9 gi|397780982|ref|YP_006545455.1| - 0.12 12.7 0.0 0.32 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF493) Aldedh PF00171.17 gi|397780983|ref|YP_006545456.1| - 2.7e-155 517.2 0.0 3e-155 517.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|397780983|ref|YP_006545456.1| - 0.0059 15.8 0.0 0.0092 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1487) Peptidase_M20 PF01546.23 gi|397780983|ref|YP_006545456.1| - 0.16 11.4 1.3 0.28 10.6 0.5 1.6 1 1 0 1 1 1 0 Peptidase family M20/M25/M40 MFS_1 PF07690.11 gi|397780984|ref|YP_006545457.1| - 3.4e-15 55.6 50.9 3.4e-15 55.6 35.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Beta-Casp PF10996.3 gi|397780985|ref|YP_006545458.1| - 1.7e-32 111.9 0.0 3.7e-32 110.9 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|397780985|ref|YP_006545458.1| - 1.7e-19 70.2 0.1 3e-19 69.4 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|397780985|ref|YP_006545458.1| - 9.1e-12 44.6 0.4 7.4e-11 41.6 0.0 2.6 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|397780985|ref|YP_006545458.1| - 1.9e-08 34.0 0.0 4.9e-08 32.7 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|397780985|ref|YP_006545458.1| - 2.1e-07 30.4 0.4 2.9e-06 26.7 0.1 2.7 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|397780985|ref|YP_006545458.1| - 7.4e-05 22.5 0.0 0.0002 21.1 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|397780985|ref|YP_006545458.1| - 0.00054 19.5 0.3 0.0017 17.9 0.2 1.9 1 0 0 1 1 1 1 KH domain 3H PF02829.9 gi|397780985|ref|YP_006545458.1| - 0.048 13.6 0.5 7.7 6.6 0.1 2.9 2 1 1 3 3 3 0 3H domain KH_3 PF13014.1 gi|397780985|ref|YP_006545458.1| - 0.062 12.9 0.7 0.19 11.4 0.5 1.9 1 0 0 1 1 1 0 KH domain KH_4 PF13083.1 gi|397780985|ref|YP_006545458.1| - 0.069 12.7 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 KH domain Proteasome PF00227.21 gi|397780986|ref|YP_006545459.1| - 2.3e-60 203.1 0.7 2.7e-60 202.9 0.5 1.0 1 0 0 1 1 1 1 Proteasome subunit CBS PF00571.23 gi|397780987|ref|YP_006545460.1| - 9.2e-46 153.3 11.0 1.1e-16 60.3 0.2 4.2 4 0 0 4 4 4 4 CBS domain H_kinase_N PF12282.3 gi|397780987|ref|YP_006545460.1| - 0.028 14.0 0.1 20 4.7 0.0 3.3 3 0 0 3 3 3 0 Signal transduction histidine kinase IF3_N PF05198.11 gi|397780987|ref|YP_006545460.1| - 0.083 12.8 0.1 2.5 8.0 0.0 2.8 3 0 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain Usp PF00582.21 gi|397780988|ref|YP_006545461.1| - 1.4e-36 125.7 0.6 1.6e-36 125.5 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Nitro_FeMo-Co PF02579.12 gi|397780988|ref|YP_006545461.1| - 0.054 13.5 0.1 0.11 12.5 0.0 1.6 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Amidohydro_1 PF01979.15 gi|590000694|ref|YP_006545462.2| - 7.3e-15 55.4 0.4 1.3e-12 48.0 0.3 2.1 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.17 gi|590000694|ref|YP_006545462.2| - 4e-10 39.1 0.0 5.6e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|590000694|ref|YP_006545462.2| - 0.00091 18.9 0.1 0.0021 17.8 0.0 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|590000694|ref|YP_006545462.2| - 0.06 12.5 8.4 0.54 9.4 5.1 2.6 1 1 1 2 2 2 0 Amidohydrolase family F420_ligase PF01996.11 gi|397780990|ref|YP_006545463.1| - 4.9e-62 208.9 0.1 5.8e-62 208.7 0.0 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase CTP_transf_1 PF01148.15 gi|397780992|ref|YP_006545465.1| - 1e-06 28.6 12.7 5.8e-06 26.1 8.8 2.1 1 1 0 1 1 1 1 Cytidylyltransferase family FUSC_2 PF13515.1 gi|397780992|ref|YP_006545465.1| - 0.91 9.4 15.8 24 4.8 7.1 2.6 1 1 1 2 2 2 0 Fusaric acid resistance protein-like YIEGIA PF14045.1 gi|397780992|ref|YP_006545465.1| - 9.7 4.7 6.9 0.89 8.1 0.2 2.2 3 0 0 3 3 3 0 YIEGIA protein SNARE_assoc PF09335.6 gi|397780993|ref|YP_006545466.1| - 0.028 14.6 2.3 0.13 12.4 0.5 2.0 1 1 1 2 2 2 0 SNARE associated Golgi protein FA_desaturase PF00487.19 gi|397780993|ref|YP_006545466.1| - 0.052 12.9 2.9 0.072 12.5 2.0 1.2 1 0 0 1 1 1 0 Fatty acid desaturase NB PF04159.8 gi|397780993|ref|YP_006545466.1| - 0.15 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 NB glycoprotein DUF4063 PF13272.1 gi|397780993|ref|YP_006545466.1| - 0.16 11.8 0.7 0.31 10.8 0.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4063) UPF0020 PF01170.13 gi|397780994|ref|YP_006545467.1| - 9.8e-32 109.9 0.0 1.5e-31 109.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|397780994|ref|YP_006545467.1| - 1.7e-15 57.0 0.1 3.3e-15 56.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397780994|ref|YP_006545467.1| - 1.4e-06 28.0 0.0 2e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|397780994|ref|YP_006545467.1| - 1.7e-06 27.7 0.0 0.0001 21.8 0.0 2.1 2 0 0 2 2 2 1 DNA methylase Methyltransf_11 PF08241.7 gi|397780994|ref|YP_006545467.1| - 4.3e-06 27.1 0.0 1e-05 25.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397780994|ref|YP_006545467.1| - 3e-05 24.5 0.0 5.6e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397780994|ref|YP_006545467.1| - 0.0003 20.5 0.0 0.0069 16.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|397780994|ref|YP_006545467.1| - 0.012 14.7 0.0 0.11 11.4 0.0 2.0 2 0 0 2 2 2 0 N-6 DNA Methylase MethyltransfD12 PF02086.10 gi|397780994|ref|YP_006545467.1| - 0.047 13.1 0.0 0.068 12.6 0.0 1.1 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_12 PF08242.7 gi|397780994|ref|YP_006545467.1| - 0.11 13.0 0.0 0.31 11.5 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain DUF4388 PF14332.1 gi|397780995|ref|YP_006545468.1| - 0.00099 18.9 0.1 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4388) CTV_P6 PF06706.6 gi|397780996|ref|YP_006545469.1| - 0.0017 17.8 0.2 0.0026 17.1 0.1 1.3 1 0 0 1 1 1 1 Citrus tristeza virus 6-kDa protein CbiA PF01656.18 gi|397780997|ref|YP_006545470.1| - 2.1e-28 99.0 0.1 2.8e-28 98.6 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|397780997|ref|YP_006545470.1| - 2.3e-14 53.6 0.0 3.1e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|397780997|ref|YP_006545470.1| - 7e-10 38.5 0.6 7.9e-09 35.0 0.4 2.0 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.1 gi|397780997|ref|YP_006545470.1| - 6e-06 26.0 3.4 9.4e-06 25.3 0.1 2.1 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|397780997|ref|YP_006545470.1| - 6.6e-06 25.3 3.6 6.1e-05 22.2 0.7 2.7 3 0 0 3 3 3 1 Anion-transporting ATPase MipZ PF09140.6 gi|397780997|ref|YP_006545470.1| - 0.00011 21.3 0.3 0.09 11.8 0.1 2.1 2 0 0 2 2 2 2 ATPase MipZ YhjQ PF06564.7 gi|397780997|ref|YP_006545470.1| - 0.0029 17.0 0.0 0.026 13.8 0.0 2.0 1 1 0 1 1 1 1 YhjQ protein VirC1 PF07015.6 gi|397780997|ref|YP_006545470.1| - 0.0053 15.8 0.3 0.0084 15.2 0.2 1.2 1 0 0 1 1 1 1 VirC1 protein ParA PF10609.4 gi|397780997|ref|YP_006545470.1| - 0.026 14.3 1.9 0.065 13.1 0.7 2.0 1 1 1 2 2 2 0 ParA/MinD ATPase like SRP54 PF00448.17 gi|397780997|ref|YP_006545470.1| - 0.038 13.4 1.2 0.08 12.3 0.8 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|397780997|ref|YP_006545470.1| - 0.043 13.5 0.2 0.084 12.5 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.15 gi|397780997|ref|YP_006545470.1| - 0.052 13.2 0.2 0.086 12.4 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_24 PF13479.1 gi|397780997|ref|YP_006545470.1| - 0.053 13.1 0.0 0.074 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|397780997|ref|YP_006545470.1| - 0.11 11.8 0.3 0.17 11.2 0.2 1.5 1 1 0 1 1 1 0 AAA domain Fer4 PF00037.22 gi|397780998|ref|YP_006545471.1| - 8.5e-12 44.1 16.5 8.5e-07 28.3 2.5 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397780998|ref|YP_006545471.1| - 4.9e-10 38.8 16.5 1.6e-06 27.7 2.6 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397780998|ref|YP_006545471.1| - 7.4e-10 38.4 22.2 7.2e-08 32.1 8.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397780998|ref|YP_006545471.1| - 6.9e-09 35.4 12.6 2.6e-08 33.5 8.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397780998|ref|YP_006545471.1| - 8.3e-09 35.7 10.9 8.3e-09 35.7 7.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397780998|ref|YP_006545471.1| - 3.8e-08 33.4 9.8 6.2e-08 32.7 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397780998|ref|YP_006545471.1| - 3.1e-07 29.9 18.2 9.2e-05 22.1 2.8 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|397780998|ref|YP_006545471.1| - 3.7e-07 30.6 10.9 1.2e-05 25.7 1.4 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|397780998|ref|YP_006545471.1| - 3.7e-06 26.8 16.0 0.0055 16.9 2.2 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397780998|ref|YP_006545471.1| - 7.2e-06 25.9 13.5 0.0022 17.9 1.9 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397780998|ref|YP_006545471.1| - 1.8e-05 25.3 8.2 0.031 15.0 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|397780998|ref|YP_006545471.1| - 7.4e-05 23.0 13.9 0.0029 17.8 1.8 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|397780998|ref|YP_006545471.1| - 9e-05 22.7 12.7 0.0011 19.3 1.3 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|397780998|ref|YP_006545471.1| - 0.00011 22.5 15.7 0.0091 16.3 3.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|397780998|ref|YP_006545471.1| - 0.093 12.6 6.8 1.9 8.4 0.1 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain GF_recep_IV PF14843.1 gi|397780998|ref|YP_006545471.1| - 0.097 12.2 5.6 0.14 11.7 3.8 1.3 1 0 0 1 1 1 0 Growth factor receptor domain IV Fer4_19 PF06902.6 gi|397780998|ref|YP_006545471.1| - 0.8 9.5 7.2 2.2 8.1 5.0 1.8 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_3 PF12798.2 gi|397780998|ref|YP_006545471.1| - 3 8.6 23.6 1.6 9.4 3.7 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain V4R PF02830.13 gi|397780999|ref|YP_006545472.1| - 0.0045 16.7 0.0 0.019 14.7 0.0 2.0 2 0 0 2 2 2 1 V4R domain ATC_hydrolase PF14196.1 gi|397780999|ref|YP_006545472.1| - 0.0084 16.5 0.0 0.013 15.9 0.0 1.2 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase RSV_NS2 PF03113.9 gi|397780999|ref|YP_006545472.1| - 0.099 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Respiratory synctial virus non-structural protein NS2 Oxidored_q6 PF01058.17 gi|397781000|ref|YP_006545473.1| - 1.4e-27 95.8 0.3 4.9e-27 94.1 0.0 1.9 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.14 gi|397781001|ref|YP_006545474.1| - 3e-38 131.8 0.0 9.2e-20 70.8 0.0 2.9 2 1 1 3 3 3 3 Nickel-dependent hydrogenase Robl_LC7 PF03259.12 gi|397781002|ref|YP_006545475.1| - 2.3e-16 59.1 0.6 2.9e-16 58.8 0.4 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|397781002|ref|YP_006545475.1| - 3.7e-07 29.7 0.0 4.2e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting Robl_LC7 PF03259.12 gi|397781003|ref|YP_006545476.1| - 3.4e-07 29.7 0.1 2.4e-06 27.0 0.0 2.3 3 0 0 3 3 3 1 Roadblock/LC7 domain Cupin_2 PF07883.6 gi|397781004|ref|YP_006545477.1| - 4.4e-17 61.3 0.1 6.1e-17 60.8 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|397781004|ref|YP_006545477.1| - 0.00065 19.3 0.0 0.00082 19.0 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|397781004|ref|YP_006545477.1| - 0.0092 15.3 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.13 gi|397781004|ref|YP_006545477.1| - 0.01 15.4 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase CENP-C_C PF11699.3 gi|397781004|ref|YP_006545477.1| - 0.021 14.7 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Cupin_1 PF00190.17 gi|397781004|ref|YP_006545477.1| - 0.024 14.0 0.0 0.027 13.8 0.0 1.2 1 0 0 1 1 1 0 Cupin JmjC PF02373.17 gi|397781004|ref|YP_006545477.1| - 0.13 12.5 0.1 0.25 11.6 0.0 1.5 2 0 0 2 2 2 0 JmjC domain, hydroxylase DEDD_Tnp_IS110 PF01548.12 gi|397781005|ref|YP_006545478.1| - 1.2e-31 109.3 0.0 1.9e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 Transposase Transposase_20 PF02371.11 gi|397781005|ref|YP_006545478.1| - 5.6e-24 84.0 0.0 1.3e-23 82.9 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family WI12 PF07107.6 gi|397781005|ref|YP_006545478.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Wound-induced protein WI12 Na_H_Exchanger PF00999.16 gi|397781007|ref|YP_006545480.1| - 4.4e-48 163.7 49.7 5.4e-48 163.4 34.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|397781007|ref|YP_006545480.1| - 3.3e-14 52.2 0.2 6e-14 51.3 0.1 1.5 1 0 0 1 1 1 1 TrkA-C domain DUF169 PF02596.10 gi|397781009|ref|YP_006545481.1| - 3.4e-28 98.5 0.0 4.1e-28 98.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 HTH_Tnp_4 PF13613.1 gi|397781011|ref|YP_006545484.1| - 0.013 15.0 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DUF2481 PF10654.4 gi|397781011|ref|YP_006545484.1| - 0.092 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) DUF1673 PF07895.6 gi|397781012|ref|YP_006545485.1| - 9.9e-26 90.5 0.0 1.2e-25 90.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) Trp_oprn_chp PF09534.5 gi|397781012|ref|YP_006545485.1| - 0.012 15.1 1.0 0.012 15.1 0.7 2.0 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF1183 PF06682.7 gi|397781012|ref|YP_006545485.1| - 0.065 12.8 0.4 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1183) DUF2892 PF11127.3 gi|397781012|ref|YP_006545485.1| - 2.1 8.2 0.0 2.1 8.2 0.0 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF2892) DUF1673 PF07895.6 gi|397781013|ref|YP_006545486.1| - 7e-13 48.5 0.0 8.6e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) DoxX_2 PF13564.1 gi|397781013|ref|YP_006545486.1| - 0.047 13.6 12.2 1.8 8.5 0.5 3.3 3 1 1 4 4 4 0 DoxX-like family DUF4131 PF13567.1 gi|397781013|ref|YP_006545486.1| - 2.1 7.7 15.3 2.5 7.4 2.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) FA_desaturase PF00487.19 gi|397781013|ref|YP_006545486.1| - 2.7 7.3 11.0 0.17 11.3 0.3 2.1 1 1 1 2 2 2 0 Fatty acid desaturase ABC_tran PF00005.22 gi|397781014|ref|YP_006545487.1| - 1.4e-23 83.7 0.0 1.8e-23 83.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397781014|ref|YP_006545487.1| - 1.8e-11 44.5 1.1 1.5e-09 38.2 0.8 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|397781014|ref|YP_006545487.1| - 2.2e-05 24.0 0.0 0.017 14.5 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|397781014|ref|YP_006545487.1| - 0.0001 22.3 0.0 0.00052 20.0 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|397781014|ref|YP_006545487.1| - 0.00083 19.5 0.0 0.0047 17.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|397781014|ref|YP_006545487.1| - 0.00097 19.0 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_29 PF13555.1 gi|397781014|ref|YP_006545487.1| - 0.0012 18.3 0.0 0.004 16.6 0.0 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|397781014|ref|YP_006545487.1| - 0.0052 16.0 0.0 0.023 13.9 0.0 1.8 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain FtsK_SpoIIIE PF01580.13 gi|397781014|ref|YP_006545487.1| - 0.0086 15.5 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF258 PF03193.11 gi|397781014|ref|YP_006545487.1| - 0.0096 15.1 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|397781014|ref|YP_006545487.1| - 0.018 14.9 0.0 0.034 14.0 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF815 PF05673.8 gi|397781014|ref|YP_006545487.1| - 0.018 13.9 0.0 0.029 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_23 PF13476.1 gi|397781014|ref|YP_006545487.1| - 0.019 15.3 0.0 0.028 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|397781014|ref|YP_006545487.1| - 0.036 14.5 0.0 0.065 13.7 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA PF00004.24 gi|397781014|ref|YP_006545487.1| - 0.067 13.3 0.0 0.17 12.0 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CoA_trans PF01144.18 gi|397781014|ref|YP_006545487.1| - 0.075 12.1 0.0 0.15 11.1 0.0 1.5 2 0 0 2 2 2 0 Coenzyme A transferase AAA_14 PF13173.1 gi|397781014|ref|YP_006545487.1| - 0.078 12.8 0.0 0.35 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|397781014|ref|YP_006545487.1| - 0.088 11.8 0.0 2.9 6.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|397781014|ref|YP_006545487.1| - 0.096 11.1 0.3 3.6 5.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|397781014|ref|YP_006545487.1| - 0.16 11.9 0.0 0.32 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain HTH_20 PF12840.2 gi|397781015|ref|YP_006545488.1| - 2e-10 40.3 0.0 3.1e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|397781015|ref|YP_006545488.1| - 8.8e-05 22.0 0.0 0.00024 20.7 0.0 1.7 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|397781015|ref|YP_006545488.1| - 0.0003 20.4 0.0 0.00067 19.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|397781015|ref|YP_006545488.1| - 0.00078 18.7 0.0 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|397781015|ref|YP_006545488.1| - 0.0026 17.3 0.0 0.004 16.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|397781015|ref|YP_006545488.1| - 0.0049 16.4 0.0 0.011 15.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|397781015|ref|YP_006545488.1| - 0.0076 15.9 0.1 0.022 14.4 0.0 1.7 2 0 0 2 2 2 1 MarR family DUF742 PF05331.6 gi|397781015|ref|YP_006545488.1| - 0.016 14.8 0.1 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_27 PF13463.1 gi|397781015|ref|YP_006545488.1| - 0.016 15.4 0.0 0.025 14.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain tRNA-synt_2c PF01411.14 gi|397781016|ref|YP_006545489.1| - 2.3e-116 389.3 0.0 2.9e-116 388.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|397781016|ref|YP_006545489.1| - 3.9e-12 45.7 1.1 1e-11 44.3 0.8 1.8 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.9 gi|397781016|ref|YP_006545489.1| - 1.4e-09 37.7 2.5 3.2e-09 36.5 1.7 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain SWIM PF04434.12 gi|397781017|ref|YP_006545490.1| - 5.8e-06 25.6 0.1 8.2e-06 25.1 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger NIF3 PF01784.13 gi|397781018|ref|YP_006545491.1| - 2.8e-43 148.2 0.0 3.6e-43 147.8 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) PEGA PF08308.6 gi|397781019|ref|YP_006545492.1| - 6.6e-88 288.5 15.9 1.9e-21 75.5 0.1 5.3 5 0 0 5 5 5 5 PEGA domain CarboxypepD_reg PF13620.1 gi|397781019|ref|YP_006545492.1| - 6.5e-16 58.1 14.1 4.2e-07 29.9 0.0 5.7 6 1 1 7 7 7 3 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|397781019|ref|YP_006545492.1| - 1.5e-08 34.5 0.0 0.014 15.4 0.0 4.5 4 1 1 5 5 5 2 Domain of unknown function (DUF4480) Big_1 PF02369.11 gi|397781019|ref|YP_006545492.1| - 0.0098 15.7 4.0 7.9 6.4 0.0 4.3 3 1 1 4 4 4 2 Bacterial Ig-like domain (group 1) fn3_3 PF14686.1 gi|397781019|ref|YP_006545492.1| - 0.0099 15.9 3.0 5.6 7.1 0.0 3.5 3 0 0 3 3 3 2 Polysaccharide lyase family 4, domain II DUF2012 PF09430.5 gi|397781019|ref|YP_006545492.1| - 0.047 13.5 0.0 6.1 6.7 0.0 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF2012) DUF39 PF01837.11 gi|397781020|ref|YP_006545493.1| - 8.2e-145 481.6 0.0 1.1e-144 481.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|397781020|ref|YP_006545493.1| - 1.8e-25 88.4 5.1 2.5e-12 46.3 0.2 2.5 2 0 0 2 2 2 2 CBS domain Fer4 PF00037.22 gi|397781021|ref|YP_006545494.1| - 2.2e-13 49.1 10.0 1.4e-06 27.6 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|397781021|ref|YP_006545494.1| - 1.1e-10 41.6 22.2 1e-07 32.0 7.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397781021|ref|YP_006545494.1| - 2.2e-10 40.7 9.1 3.9e-10 39.9 6.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397781021|ref|YP_006545494.1| - 7.8e-10 38.1 10.2 2.2e-05 24.0 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397781021|ref|YP_006545494.1| - 3.6e-09 36.5 2.4 0.00013 21.8 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397781021|ref|YP_006545494.1| - 4.6e-09 35.6 12.4 0.00037 20.2 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397781021|ref|YP_006545494.1| - 1.7e-08 34.1 20.7 6.7e-07 29.0 7.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397781021|ref|YP_006545494.1| - 2.9e-08 33.4 7.5 4.8e-08 32.7 5.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397781021|ref|YP_006545494.1| - 3.2e-08 34.2 8.2 0.00065 20.3 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|397781021|ref|YP_006545494.1| - 6.3e-08 32.8 2.3 0.0028 17.9 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397781021|ref|YP_006545494.1| - 2.1e-07 31.2 10.5 3.8e-05 24.0 0.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397781021|ref|YP_006545494.1| - 2.8e-07 30.3 13.2 0.0018 18.4 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|397781021|ref|YP_006545494.1| - 7.8e-05 22.9 9.4 0.0012 19.1 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|397781021|ref|YP_006545494.1| - 0.00016 21.9 19.2 0.027 15.0 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain NIL PF09383.5 gi|397781021|ref|YP_006545494.1| - 0.00017 21.0 0.1 0.00027 20.4 0.0 1.3 1 0 0 1 1 1 1 NIL domain Fer4_15 PF13459.1 gi|397781021|ref|YP_006545494.1| - 0.003 18.0 15.5 0.0032 17.9 2.3 2.6 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|397781021|ref|YP_006545494.1| - 0.0044 16.8 3.0 0.017 14.9 2.1 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain HCV_NS2 PF01538.13 gi|397781021|ref|YP_006545494.1| - 3 7.2 5.3 2.8 7.3 0.8 2.1 1 1 1 2 2 2 0 Hepatitis C virus non-structural protein NS2 ApbE PF02424.10 gi|590000696|ref|YP_006545495.2| - 1e-24 87.2 4.3 2e-24 86.2 3.0 1.5 1 1 0 1 1 1 1 ApbE family MarR_2 PF12802.2 gi|397781024|ref|YP_006545497.1| - 3e-05 23.6 0.0 4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|397781024|ref|YP_006545497.1| - 0.0081 15.8 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|397781024|ref|YP_006545497.1| - 0.015 15.5 0.0 0.023 15.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|397781024|ref|YP_006545497.1| - 0.047 13.0 0.0 0.098 12.0 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|397781024|ref|YP_006545497.1| - 0.047 13.4 0.0 0.061 13.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|397781024|ref|YP_006545497.1| - 0.096 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain B-block_TFIIIC PF04182.7 gi|397781024|ref|YP_006545497.1| - 0.1 12.4 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Trm56 PF01994.11 gi|590000697|ref|YP_009001425.1| - 5.6e-49 164.9 0.0 6.7e-49 164.6 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.1 gi|590000697|ref|YP_009001425.1| - 0.079 12.1 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP ATP-grasp_3 PF02655.9 gi|590000698|ref|YP_006545498.2| - 4.9e-30 104.5 0.0 7.1e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|590000698|ref|YP_006545498.2| - 5.8e-14 52.2 0.0 1.9e-13 50.5 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|590000698|ref|YP_006545498.2| - 7.7e-07 28.1 0.0 2.6e-05 23.1 0.0 2.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|590000698|ref|YP_006545498.2| - 0.00043 19.6 0.0 0.089 12.0 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain TFIIE_alpha PF02002.12 gi|397781026|ref|YP_006545499.1| - 5.1e-21 74.1 3.5 5.1e-21 74.1 2.4 1.5 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.7 gi|397781026|ref|YP_006545499.1| - 2.3e-05 23.6 8.3 7.3e-05 22.0 1.7 1.9 1 1 1 2 2 2 2 TFIIB zinc-binding HypA PF01155.14 gi|397781026|ref|YP_006545499.1| - 0.0058 16.3 0.3 0.011 15.3 0.2 1.6 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF4182 PF13790.1 gi|397781026|ref|YP_006545499.1| - 0.014 15.1 1.9 0.064 13.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) Phage_rep_org_N PF09681.5 gi|397781026|ref|YP_006545499.1| - 0.019 14.5 0.1 0.18 11.3 0.0 2.2 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_IclR PF09339.5 gi|397781026|ref|YP_006545499.1| - 0.04 13.5 0.0 0.074 12.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_9 PF08221.6 gi|397781026|ref|YP_006545499.1| - 0.065 13.1 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.15 gi|397781026|ref|YP_006545499.1| - 0.07 13.2 0.1 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator GntR PF00392.16 gi|397781026|ref|YP_006545499.1| - 0.089 12.2 0.1 0.21 11.0 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Spt4 PF06093.8 gi|397781026|ref|YP_006545499.1| - 0.11 12.3 0.4 0.21 11.5 0.3 1.4 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Zn_Tnp_IS1595 PF12760.2 gi|397781026|ref|YP_006545499.1| - 0.17 11.7 1.4 1.6 8.6 1.2 2.4 2 1 1 3 3 3 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|397781026|ref|YP_006545499.1| - 0.54 9.9 2.4 3.4 7.3 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2296 PF10058.4 gi|397781026|ref|YP_006545499.1| - 1.3 8.8 4.0 8.5 6.2 2.8 2.1 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) LEM PF03020.10 gi|397781026|ref|YP_006545499.1| - 1.6 8.2 3.8 15 5.1 2.7 2.5 1 1 0 1 1 1 0 LEM domain Sgf11 PF08209.6 gi|397781026|ref|YP_006545499.1| - 2.6 7.4 4.1 16 4.9 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) HD PF01966.17 gi|397781027|ref|YP_006545500.1| - 4e-15 55.9 1.5 6.1e-15 55.3 1.0 1.3 1 0 0 1 1 1 1 HD domain ACT PF01842.20 gi|590000699|ref|YP_006545501.2| - 0.01 15.3 0.1 0.046 13.2 0.0 2.1 2 1 1 3 3 3 0 ACT domain TaqI_C PF12950.2 gi|397781029|ref|YP_006545502.1| - 3.8e-23 81.5 0.0 8.4e-23 80.3 0.0 1.6 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Eco57I PF07669.6 gi|397781029|ref|YP_006545502.1| - 2.6e-16 59.8 0.0 5.5e-16 58.8 0.0 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_26 PF13659.1 gi|397781029|ref|YP_006545502.1| - 7.3e-16 58.2 0.0 1.6e-15 57.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|397781029|ref|YP_006545502.1| - 4.2e-14 52.3 0.0 9.5e-09 34.7 0.0 3.3 3 0 0 3 3 3 2 N-6 DNA Methylase HSDR_N PF04313.9 gi|397781029|ref|YP_006545502.1| - 2.9e-12 46.7 0.1 1.3e-09 38.0 0.1 2.6 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.13 gi|397781029|ref|YP_006545502.1| - 0.00012 21.6 0.0 0.012 15.1 0.0 2.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 HSDR_N_2 PF13588.1 gi|397781029|ref|YP_006545502.1| - 0.00041 20.1 0.0 0.00094 18.9 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Methyltransf_31 PF13847.1 gi|397781029|ref|YP_006545502.1| - 0.13 11.8 0.0 3 7.4 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain HEAT_2 PF13646.1 gi|397781030|ref|YP_006545503.1| - 3.6e-125 408.5 75.0 3.8e-13 49.5 0.1 16.7 4 3 15 20 20 20 19 HEAT repeats Arm PF00514.18 gi|397781030|ref|YP_006545503.1| - 4.8e-45 149.9 26.7 0.0059 16.3 0.0 24.5 17 6 10 27 27 27 10 Armadillo/beta-catenin-like repeat HEAT_PBS PF03130.11 gi|397781030|ref|YP_006545503.1| - 1.2e-39 130.7 154.9 0.014 15.8 0.0 32.0 32 1 0 32 32 32 14 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|397781030|ref|YP_006545503.1| - 7.1e-37 122.1 13.0 0.045 13.8 0.0 19.3 21 0 0 21 21 21 8 HEAT repeat HEAT_EZ PF13513.1 gi|397781030|ref|YP_006545503.1| - 4.8e-28 96.8 117.5 0.00046 20.5 0.0 23.3 16 6 9 25 25 25 12 HEAT-like repeat Aconitase_B_N PF11791.3 gi|397781030|ref|YP_006545503.1| - 1.2e-09 38.1 14.4 19 5.0 0.0 14.5 13 5 6 19 19 19 0 Aconitate B N-terminal domain DUF1546 PF07571.8 gi|397781030|ref|YP_006545503.1| - 0.00032 20.7 2.4 12 6.0 0.0 8.2 8 2 1 10 10 10 1 Protein of unknown function (DUF1546) DUF1581 PF07619.6 gi|397781030|ref|YP_006545503.1| - 0.018 15.0 2.0 49 3.9 0.0 5.5 5 1 1 6 6 6 0 Protein of unknown function (DUF1581) Cnd1 PF12717.2 gi|397781030|ref|YP_006545503.1| - 0.046 13.5 0.0 16 5.2 0.0 4.9 6 1 0 6 6 6 0 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|397781030|ref|YP_006545503.1| - 0.26 9.5 0.0 33 2.6 0.0 4.0 4 1 0 4 4 4 0 Adaptin N terminal region FKBP_C PF00254.23 gi|397781031|ref|YP_006545504.1| - 9.7e-13 47.9 0.0 1.9e-12 47.0 0.0 1.6 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase AAA_16 PF13191.1 gi|397781032|ref|YP_006545505.1| - 6.1e-15 55.6 0.5 6.1e-15 55.6 0.4 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|397781032|ref|YP_006545505.1| - 7.8e-05 22.8 0.0 0.00053 20.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|397781032|ref|YP_006545505.1| - 0.00015 21.0 0.0 0.0022 17.1 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF258 NACHT PF05729.7 gi|397781032|ref|YP_006545505.1| - 0.001 18.7 0.0 0.025 14.2 0.0 2.5 3 0 0 3 3 2 1 NACHT domain RuvB_N PF05496.7 gi|397781032|ref|YP_006545505.1| - 0.0026 16.8 0.0 0.0046 16.0 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus MMR_HSR1 PF01926.18 gi|397781032|ref|YP_006545505.1| - 0.0036 17.2 0.0 0.014 15.3 0.0 2.0 2 1 0 2 2 1 1 50S ribosome-binding GTPase TPR_12 PF13424.1 gi|397781032|ref|YP_006545505.1| - 0.0041 17.0 3.7 0.055 13.4 0.8 3.2 2 1 1 3 3 2 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|397781032|ref|YP_006545505.1| - 0.013 15.1 1.0 1.1 8.9 0.1 3.4 2 1 1 3 3 3 0 TPR repeat AAA_10 PF12846.2 gi|397781032|ref|YP_006545505.1| - 0.014 14.8 0.0 0.027 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain ArgK PF03308.11 gi|397781032|ref|YP_006545505.1| - 0.015 14.1 0.0 0.027 13.2 0.0 1.3 1 0 0 1 1 1 0 ArgK protein RNA_helicase PF00910.17 gi|397781032|ref|YP_006545505.1| - 0.022 14.9 0.0 0.04 14.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|397781032|ref|YP_006545505.1| - 0.027 14.7 0.0 0.098 12.9 0.0 1.8 2 0 0 2 2 2 0 ABC transporter AAA_17 PF13207.1 gi|397781032|ref|YP_006545505.1| - 0.028 15.2 0.7 0.073 13.8 0.1 2.2 2 1 0 2 2 1 0 AAA domain AAA_25 PF13481.1 gi|397781032|ref|YP_006545505.1| - 0.04 13.3 0.0 0.11 11.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain TPR_3 PF07720.7 gi|397781032|ref|YP_006545505.1| - 0.049 13.4 0.2 1.2 9.0 0.2 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_18 PF13238.1 gi|397781032|ref|YP_006545505.1| - 0.056 13.7 0.0 0.24 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|397781032|ref|YP_006545505.1| - 0.057 13.1 0.0 0.29 10.9 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain Arch_ATPase PF01637.13 gi|397781032|ref|YP_006545505.1| - 0.061 13.0 0.0 0.11 12.1 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase AAA_28 PF13521.1 gi|397781032|ref|YP_006545505.1| - 0.069 13.1 0.0 0.36 10.7 0.0 2.3 3 0 0 3 3 1 0 AAA domain TPR_10 PF13374.1 gi|397781032|ref|YP_006545505.1| - 0.081 12.8 1.2 1.1 9.2 0.1 3.4 2 1 1 3 3 3 0 Tetratricopeptide repeat Mg_chelatase PF01078.16 gi|397781032|ref|YP_006545505.1| - 0.088 11.9 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|397781032|ref|YP_006545505.1| - 0.12 12.5 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|397781032|ref|YP_006545505.1| - 0.14 11.0 0.0 4 6.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|397781032|ref|YP_006545505.1| - 0.14 11.9 0.0 0.45 10.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|397781032|ref|YP_006545505.1| - 0.15 11.9 0.0 0.35 10.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|397781032|ref|YP_006545505.1| - 0.2 12.1 0.0 0.39 11.2 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein TPR_16 PF13432.1 gi|397781032|ref|YP_006545505.1| - 0.58 10.9 10.0 19 6.1 0.4 4.7 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|397781032|ref|YP_006545505.1| - 3.5 7.7 8.2 5.5 7.1 0.0 4.5 4 1 1 5 5 5 0 Tetratricopeptide repeat CYTH PF01928.16 gi|397781033|ref|YP_006545506.1| - 7.3e-31 107.2 0.1 8e-31 107.1 0.1 1.0 1 0 0 1 1 1 1 CYTH domain Metallophos_2 PF12850.2 gi|397781034|ref|YP_006545507.1| - 1.7e-16 60.4 0.1 2.5e-16 59.9 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|397781034|ref|YP_006545507.1| - 2e-11 43.6 1.0 3.3e-11 42.9 0.7 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|397781034|ref|YP_006545507.1| - 1.1e-07 31.2 0.0 5.9e-07 28.9 0.0 2.0 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Radical_SAM PF04055.16 gi|397781035|ref|YP_006545508.1| - 1.6e-24 86.9 0.1 2.5e-24 86.3 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|397781035|ref|YP_006545508.1| - 1.4e-07 31.4 0.0 2.7e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain PRC PF05239.11 gi|397781036|ref|YP_006545509.1| - 6.6e-18 64.3 0.0 7.8e-18 64.1 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain ABC_tran PF00005.22 gi|397781037|ref|YP_006545510.1| - 1.3e-20 74.0 3.1 5.8e-09 36.3 0.2 4.8 4 1 0 4 4 4 3 ABC transporter AAA_21 PF13304.1 gi|397781037|ref|YP_006545510.1| - 5.9e-09 36.3 3.2 0.049 13.5 0.0 4.4 4 0 0 4 4 4 3 AAA domain AAA_29 PF13555.1 gi|397781037|ref|YP_006545510.1| - 6.2e-09 35.2 0.2 0.0044 16.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.14 gi|397781037|ref|YP_006545510.1| - 8.7e-09 34.9 0.0 0.19 10.9 0.0 4.1 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|397781037|ref|YP_006545510.1| - 2.5e-08 34.1 1.5 0.61 10.2 0.0 4.6 4 0 0 4 4 4 3 AAA domain AAA_33 PF13671.1 gi|397781037|ref|YP_006545510.1| - 4.1e-07 29.9 0.1 0.04 13.8 0.0 3.8 4 0 0 4 4 4 2 AAA domain AAA_14 PF13173.1 gi|397781037|ref|YP_006545510.1| - 9.7e-07 28.7 0.1 0.1 12.5 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|397781037|ref|YP_006545510.1| - 4.7e-06 26.1 0.0 0.18 11.1 0.0 3.2 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|397781037|ref|YP_006545510.1| - 1.2e-05 25.5 0.3 0.21 11.9 0.2 3.2 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|397781037|ref|YP_006545510.1| - 2.1e-05 23.7 0.0 0.13 11.4 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|397781037|ref|YP_006545510.1| - 2.6e-05 24.2 4.1 0.23 11.4 0.0 3.7 3 1 0 3 3 2 2 AAA ATPase domain AAA_15 PF13175.1 gi|397781037|ref|YP_006545510.1| - 3.3e-05 23.1 0.3 1.1 8.2 0.0 4.1 4 0 0 4 4 4 1 AAA ATPase domain AAA_23 PF13476.1 gi|397781037|ref|YP_006545510.1| - 3.4e-05 24.2 7.7 0.042 14.1 0.1 3.1 4 0 0 4 4 2 2 AAA domain AAA_19 PF13245.1 gi|397781037|ref|YP_006545510.1| - 3.6e-05 23.4 0.1 0.52 10.1 0.0 3.5 3 0 0 3 3 3 2 Part of AAA domain DnaJ_CXXCXGXG PF00684.14 gi|397781037|ref|YP_006545510.1| - 8e-05 22.6 5.6 0.012 15.6 0.2 3.4 3 0 0 3 3 3 1 DnaJ central domain AAA_17 PF13207.1 gi|397781037|ref|YP_006545510.1| - 0.0001 23.1 5.8 0.23 12.2 0.4 4.0 4 0 0 4 4 3 2 AAA domain Viral_helicase1 PF01443.13 gi|397781037|ref|YP_006545510.1| - 0.00027 20.5 0.0 0.12 11.8 0.0 2.8 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase APS_kinase PF01583.15 gi|397781037|ref|YP_006545510.1| - 0.00031 20.4 0.0 0.63 9.6 0.0 2.5 2 0 0 2 2 2 2 Adenylylsulphate kinase KaiC PF06745.8 gi|397781037|ref|YP_006545510.1| - 0.00034 19.8 0.1 0.47 9.5 0.0 2.9 2 0 0 2 2 2 2 KaiC AAA_10 PF12846.2 gi|397781037|ref|YP_006545510.1| - 0.00046 19.7 0.0 0.33 10.3 0.0 3.0 3 0 0 3 3 2 1 AAA-like domain Lar_restr_allev PF14354.1 gi|397781037|ref|YP_006545510.1| - 0.00072 19.8 5.7 3.8 7.8 0.1 3.6 3 0 0 3 3 3 0 Restriction alleviation protein Lar cobW PF02492.14 gi|397781037|ref|YP_006545510.1| - 0.00076 18.9 0.2 0.26 10.7 0.0 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain DUF2075 PF09848.4 gi|397781037|ref|YP_006545510.1| - 0.0014 17.6 0.0 0.63 8.9 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|397781037|ref|YP_006545510.1| - 0.0014 18.3 4.3 3.9 7.1 0.0 4.1 3 1 0 3 3 3 0 NTPase T2SE PF00437.15 gi|397781037|ref|YP_006545510.1| - 0.0027 16.6 0.1 1.5 7.6 0.0 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein NACHT PF05729.7 gi|397781037|ref|YP_006545510.1| - 0.0029 17.2 0.0 1.4 8.5 0.0 2.4 2 0 0 2 2 2 1 NACHT domain Arch_ATPase PF01637.13 gi|397781037|ref|YP_006545510.1| - 0.006 16.3 4.1 2.8 7.5 0.0 3.8 4 0 0 4 4 4 1 Archaeal ATPase MobB PF03205.9 gi|397781037|ref|YP_006545510.1| - 0.0071 16.0 0.1 1.6 8.4 0.0 3.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|397781037|ref|YP_006545510.1| - 0.0079 16.3 0.0 2.5 8.3 0.0 2.9 2 0 0 2 2 2 1 RNA helicase PRK PF00485.13 gi|397781037|ref|YP_006545510.1| - 0.0079 15.7 0.0 1.4 8.4 0.0 2.6 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family ArgK PF03308.11 gi|397781037|ref|YP_006545510.1| - 0.0082 14.9 0.2 7.1 5.3 0.0 3.2 3 0 0 3 3 3 0 ArgK protein DAP3 PF10236.4 gi|397781037|ref|YP_006545510.1| - 0.0082 15.1 0.1 1.5 7.6 0.1 2.5 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 zf-ISL3 PF14690.1 gi|397781037|ref|YP_006545510.1| - 0.011 15.7 2.6 0.91 9.6 0.0 4.1 4 0 0 4 4 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 MMR_HSR1 PF01926.18 gi|397781037|ref|YP_006545510.1| - 0.014 15.3 0.4 7 6.6 0.0 3.8 4 0 0 4 4 3 0 50S ribosome-binding GTPase Miro PF08477.8 gi|397781037|ref|YP_006545510.1| - 0.019 15.4 0.1 18 5.8 0.0 4.0 4 0 0 4 4 3 0 Miro-like protein BCA_ABC_TP_C PF12399.3 gi|397781037|ref|YP_006545510.1| - 0.022 14.4 7.4 0.33 10.6 0.8 2.9 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter AAA_28 PF13521.1 gi|397781037|ref|YP_006545510.1| - 0.03 14.2 0.9 8.5 6.3 0.0 3.0 3 0 0 3 3 2 0 AAA domain AAA_30 PF13604.1 gi|397781037|ref|YP_006545510.1| - 0.043 13.3 0.1 9.7 5.7 0.0 3.0 3 0 0 3 3 3 0 AAA domain SbcCD_C PF13558.1 gi|397781037|ref|YP_006545510.1| - 0.055 13.3 2.1 14 5.6 0.1 3.9 3 2 0 3 3 3 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.7 gi|397781037|ref|YP_006545510.1| - 0.055 12.5 0.5 2.9 6.9 0.0 2.9 3 0 0 3 3 3 0 Zeta toxin KTI12 PF08433.5 gi|397781037|ref|YP_006545510.1| - 0.16 11.1 0.0 9 5.4 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Zn-ribbon_8 PF09723.5 gi|397781037|ref|YP_006545510.1| - 0.95 9.4 11.4 1.1 9.2 0.3 3.7 3 1 0 3 3 3 0 Zinc ribbon domain UvrC_HhH_N PF08459.6 gi|397781038|ref|YP_006545511.1| - 6.7e-54 181.6 0.0 1.4e-53 180.5 0.0 1.6 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.19 gi|397781038|ref|YP_006545511.1| - 4.2e-11 43.0 0.0 1.1e-10 41.7 0.0 1.7 1 0 0 1 1 1 1 GIY-YIG catalytic domain UVR PF02151.14 gi|397781038|ref|YP_006545511.1| - 9.8e-11 40.8 1.1 2.1e-10 39.7 0.8 1.6 1 0 0 1 1 1 1 UvrB/uvrC motif UvrB PF12344.3 gi|397781039|ref|YP_006545512.1| - 5.8e-22 76.9 1.7 1.5e-21 75.6 1.2 1.8 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|397781039|ref|YP_006545512.1| - 5.6e-16 58.1 0.1 1.1e-15 57.2 0.1 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|397781039|ref|YP_006545512.1| - 1.2e-11 44.8 0.0 1.4e-10 41.3 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|397781039|ref|YP_006545512.1| - 7e-10 38.1 4.7 7e-10 38.1 3.3 2.6 3 0 0 3 3 3 1 UvrB/uvrC motif DEAD PF00270.24 gi|397781039|ref|YP_006545512.1| - 3e-05 23.5 0.0 0.0019 17.7 0.0 2.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|397781039|ref|YP_006545512.1| - 4.5e-05 23.1 0.1 0.065 12.8 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|397781039|ref|YP_006545512.1| - 0.0011 18.7 1.2 0.12 12.1 0.0 3.1 3 0 0 3 3 3 1 Part of AAA domain Kinesin PF00225.18 gi|397781039|ref|YP_006545512.1| - 0.072 11.7 0.0 0.12 11.0 0.0 1.2 1 0 0 1 1 1 0 Kinesin motor domain AAA_22 PF13401.1 gi|397781039|ref|YP_006545512.1| - 0.13 12.4 0.0 1.8 8.7 0.0 2.8 3 0 0 3 3 3 0 AAA domain Viral_helicase1 PF01443.13 gi|397781039|ref|YP_006545512.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase eRF1_1 PF03463.10 gi|590000700|ref|YP_006545513.2| - 3e-34 117.4 0.0 4.5e-34 116.8 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|590000700|ref|YP_006545513.2| - 3.9e-19 68.9 1.5 7.9e-19 67.9 0.3 2.1 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|590000700|ref|YP_006545513.2| - 7.6e-10 39.2 0.0 4.6e-09 36.6 0.0 2.0 1 1 0 1 1 1 1 eRF1 domain 2 FbpA PF05833.6 gi|590000701|ref|YP_006545514.2| - 7.3e-65 219.2 0.0 9.5e-65 218.8 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|590000701|ref|YP_006545514.2| - 3.8e-26 90.8 0.1 7.7e-26 89.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF814) ABC_tran PF00005.22 gi|397781043|ref|YP_006545516.1| - 2.5e-40 137.9 0.0 6.7e-20 71.7 0.0 2.4 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|397781043|ref|YP_006545516.1| - 3.4e-18 65.7 1.0 3.6e-07 29.6 0.0 3.5 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|397781043|ref|YP_006545516.1| - 4.7e-16 59.6 2.6 0.0014 18.6 0.4 4.4 2 2 1 3 3 3 3 AAA domain RLI PF04068.10 gi|397781043|ref|YP_006545516.1| - 1.2e-10 40.7 2.3 3.1e-10 39.4 1.6 1.8 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|397781043|ref|YP_006545516.1| - 6.3e-08 31.9 3.4 6.3e-08 31.9 2.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397781043|ref|YP_006545516.1| - 5.1e-07 29.2 10.7 1.6e-05 24.5 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_17 PF13207.1 gi|397781043|ref|YP_006545516.1| - 2.1e-06 28.5 0.3 0.0095 16.7 0.1 2.9 2 2 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|397781043|ref|YP_006545516.1| - 3.3e-06 26.6 2.4 0.0068 15.8 0.2 3.5 3 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|397781043|ref|YP_006545516.1| - 1.2e-05 24.7 2.3 0.0091 15.5 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain Fer4_21 PF14697.1 gi|397781043|ref|YP_006545516.1| - 1.4e-05 24.8 8.6 2.2e-05 24.2 6.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_23 PF13476.1 gi|397781043|ref|YP_006545516.1| - 5e-05 23.7 0.0 0.24 11.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain Fer4_7 PF12838.2 gi|397781043|ref|YP_006545516.1| - 0.00014 22.1 9.4 0.00025 21.3 6.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397781043|ref|YP_006545516.1| - 0.00027 20.6 12.1 0.00091 19.0 1.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain DUF258 PF03193.11 gi|397781043|ref|YP_006545516.1| - 0.00042 19.5 0.2 0.64 9.1 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|397781043|ref|YP_006545516.1| - 0.00052 20.1 0.0 1 9.5 0.0 2.7 2 0 0 2 2 2 1 RNA helicase Fer4_10 PF13237.1 gi|397781043|ref|YP_006545516.1| - 0.00073 19.2 9.3 0.0063 16.2 1.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_22 PF13401.1 gi|397781043|ref|YP_006545516.1| - 0.0017 18.5 2.0 1.1 9.3 0.1 3.4 3 1 0 3 3 3 1 AAA domain Rad17 PF03215.10 gi|397781043|ref|YP_006545516.1| - 0.0019 16.9 0.0 0.013 14.1 0.0 2.1 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein SbcCD_C PF13558.1 gi|397781043|ref|YP_006545516.1| - 0.0019 18.0 0.0 2.9 7.8 0.0 3.3 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|397781043|ref|YP_006545516.1| - 0.004 17.3 0.0 2.8 8.1 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Fer4_9 PF13187.1 gi|397781043|ref|YP_006545516.1| - 0.0044 17.2 8.7 0.0085 16.3 6.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_16 PF13191.1 gi|397781043|ref|YP_006545516.1| - 0.0045 16.9 4.7 0.35 10.8 0.0 3.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|397781043|ref|YP_006545516.1| - 0.0053 17.0 0.9 5.4 7.3 0.0 3.3 3 1 0 3 3 2 0 AAA domain NACHT PF05729.7 gi|397781043|ref|YP_006545516.1| - 0.0055 16.3 0.5 0.49 10.0 0.0 2.8 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.9 gi|397781043|ref|YP_006545516.1| - 0.015 14.9 0.1 5.3 6.7 0.0 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|397781043|ref|YP_006545516.1| - 0.039 13.5 0.2 13 5.2 0.1 2.8 3 0 0 3 3 2 0 AAA domain MobB PF03205.9 gi|397781043|ref|YP_006545516.1| - 0.039 13.6 0.8 3 7.5 0.0 2.8 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|397781043|ref|YP_006545516.1| - 0.043 12.8 0.1 0.96 8.4 0.0 2.6 2 1 1 3 3 3 0 AAA ATPase domain AAA_14 PF13173.1 gi|397781043|ref|YP_006545516.1| - 0.044 13.6 1.1 9.7 6.1 0.0 3.0 3 1 0 3 3 3 0 AAA domain VirE PF05272.6 gi|397781043|ref|YP_006545516.1| - 0.073 12.5 0.1 15 4.9 0.0 2.7 3 0 0 3 3 2 0 Virulence-associated protein E AAA_31 PF13614.1 gi|397781043|ref|YP_006545516.1| - 0.084 12.8 0.0 0.88 9.4 0.0 2.7 3 0 0 3 3 3 0 AAA domain Miro PF08477.8 gi|397781043|ref|YP_006545516.1| - 0.1 13.1 0.1 4.9 7.6 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein AAA_10 PF12846.2 gi|397781043|ref|YP_006545516.1| - 0.1 12.0 3.0 6.9 6.0 0.4 2.5 2 1 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|397781043|ref|YP_006545516.1| - 0.11 12.4 4.5 0.43 10.4 0.1 3.1 3 1 0 3 3 2 0 AAA domain NTPase_1 PF03266.10 gi|397781043|ref|YP_006545516.1| - 0.15 11.8 1.6 23 4.6 0.1 3.3 3 0 0 3 3 3 0 NTPase Fer4_4 PF12800.2 gi|397781043|ref|YP_006545516.1| - 0.17 12.3 11.6 0.074 13.4 1.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain DUF87 PF01935.12 gi|397781043|ref|YP_006545516.1| - 0.22 11.2 4.2 9.9 5.8 0.1 2.8 3 0 0 3 3 2 0 Domain of unknown function DUF87 AAA_28 PF13521.1 gi|397781043|ref|YP_006545516.1| - 0.23 11.4 0.9 19 5.1 0.0 3.0 3 0 0 3 3 2 0 AAA domain Fer4_8 PF13183.1 gi|397781043|ref|YP_006545516.1| - 0.25 11.3 7.0 0.53 10.3 4.8 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_13 PF13166.1 gi|397781043|ref|YP_006545516.1| - 0.36 9.2 0.0 15 3.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|397781043|ref|YP_006545516.1| - 0.43 9.4 1.1 3.2 6.5 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain Mg_chelatase PF01078.16 gi|397781043|ref|YP_006545516.1| - 0.54 9.3 1.6 13 4.8 0.0 2.6 3 0 0 3 3 2 0 Magnesium chelatase, subunit ChlI Fer4_18 PF13746.1 gi|397781043|ref|YP_006545516.1| - 0.71 10.3 7.7 0.14 12.6 2.1 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain ArgK PF03308.11 gi|397781043|ref|YP_006545516.1| - 1.9 7.2 4.6 14 4.3 0.3 2.2 2 0 0 2 2 2 0 ArgK protein Fer4_3 PF12798.2 gi|397781043|ref|YP_006545516.1| - 2.3 8.9 14.9 0.055 14.0 3.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|397781043|ref|YP_006545516.1| - 3.5 8.4 8.8 0.12 13.1 0.9 2.0 1 1 2 3 3 2 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|397781043|ref|YP_006545516.1| - 3.7 7.9 8.6 0.6 10.4 1.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Reg_prop PF07494.6 gi|397781044|ref|YP_006545517.1| - 9.9e-05 21.9 3.4 2.5 8.4 0.0 4.8 5 0 0 5 5 5 3 Two component regulator propeller CheD PF03975.8 gi|397781045|ref|YP_006545518.1| - 8.5e-27 93.1 0.0 1e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|397781046|ref|YP_006545519.1| - 3.1e-20 71.6 5.0 4.1e-12 45.6 0.1 2.7 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|397781046|ref|YP_006545519.1| - 4.8e-08 32.7 3.8 2.3e-05 24.1 0.4 2.7 3 1 0 3 3 3 2 Chemotaxis phosphatase CheX MMS1_N PF10433.4 gi|397781046|ref|YP_006545519.1| - 0.13 10.4 0.0 0.18 9.9 0.0 1.1 1 0 0 1 1 1 0 Mono-functional DNA-alkylating methyl methanesulfonate N-term HATPase_c PF02518.21 gi|397781047|ref|YP_006545520.1| - 2.8e-24 84.9 0.0 1.1e-23 83.0 0.0 2.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.18 gi|397781047|ref|YP_006545520.1| - 1.3e-23 82.8 0.8 4.6e-23 81.0 0.6 2.1 1 0 0 1 1 1 1 Hpt domain CheW PF01584.14 gi|397781047|ref|YP_006545520.1| - 4.9e-21 74.6 1.3 9.5e-21 73.7 0.9 1.5 1 0 0 1 1 1 1 CheW-like domain P2 PF07194.6 gi|397781047|ref|YP_006545520.1| - 1.8e-18 66.1 0.0 4.7e-18 64.8 0.0 1.7 1 0 0 1 1 1 1 P2 response regulator binding domain H-kinase_dim PF02895.9 gi|397781047|ref|YP_006545520.1| - 2.9e-16 59.5 2.8 2.9e-16 59.5 2.0 2.1 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_2 PF13581.1 gi|397781047|ref|YP_006545520.1| - 0.00071 19.3 0.0 0.0022 17.7 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|397781047|ref|YP_006545520.1| - 0.017 14.7 0.1 0.042 13.5 0.1 1.7 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|397781047|ref|YP_006545520.1| - 0.029 14.0 0.1 0.15 11.8 0.0 2.1 1 1 0 1 1 1 0 GHKL domain Snf7 PF03357.16 gi|397781047|ref|YP_006545520.1| - 1.1 8.6 4.7 14 5.0 0.0 3.2 4 0 0 4 4 4 0 Snf7 CheB_methylest PF01339.12 gi|397781048|ref|YP_006545521.1| - 1.6e-63 213.4 0.5 4.8e-62 208.6 0.2 2.2 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.19 gi|397781048|ref|YP_006545521.1| - 1.2e-24 86.4 0.2 2.6e-24 85.3 0.2 1.6 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.14 gi|397781048|ref|YP_006545521.1| - 0.082 12.7 0.0 0.97 9.3 0.0 2.5 1 1 0 1 1 1 0 B12 binding domain Response_reg PF00072.19 gi|397781049|ref|YP_006545522.1| - 1.1e-29 102.7 0.3 1.2e-29 102.5 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheF-arch PF04283.7 gi|397781050|ref|YP_006545523.1| - 2.2e-22 79.3 0.0 1.1e-21 77.0 0.0 1.9 1 1 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea Rtt106 PF08512.7 gi|397781050|ref|YP_006545523.1| - 0.00034 20.5 0.0 0.00079 19.3 0.0 1.5 1 0 0 1 1 1 1 Histone chaperone Rttp106-like DUF4226 PF10774.4 gi|397781051|ref|YP_006545524.1| - 0.2 11.7 1.5 6.7 6.8 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) BAG PF02179.11 gi|397781051|ref|YP_006545524.1| - 0.4 10.8 6.0 0.099 12.7 0.4 2.6 3 0 0 3 3 3 0 BAG domain T2SF PF00482.18 gi|397781052|ref|YP_006545525.1| - 3.4e-11 43.1 7.9 1.8e-06 27.8 0.1 3.4 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|397781053|ref|YP_006545526.1| - 1.3e-45 155.3 0.0 1.9e-45 154.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|397781053|ref|YP_006545526.1| - 0.0011 18.4 0.0 0.0025 17.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|397781053|ref|YP_006545526.1| - 0.0034 17.5 0.0 0.016 15.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|397781053|ref|YP_006545526.1| - 0.004 17.4 0.0 0.01 16.1 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.1 gi|397781053|ref|YP_006545526.1| - 0.13 12.1 0.0 0.48 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain KaiC PF06745.8 gi|397781054|ref|YP_006545527.1| - 1.8e-24 86.1 0.3 2.1e-24 85.9 0.2 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|397781054|ref|YP_006545527.1| - 1.2e-10 41.1 0.0 1.8e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain PAXNEB PF05625.6 gi|397781054|ref|YP_006545527.1| - 5.2e-05 22.2 1.1 0.0017 17.2 0.1 2.1 2 0 0 2 2 2 1 PAXNEB protein Rad51 PF08423.6 gi|397781054|ref|YP_006545527.1| - 0.00073 18.5 0.2 0.0062 15.4 0.1 2.0 1 1 0 1 1 1 1 Rad51 AAA_22 PF13401.1 gi|397781054|ref|YP_006545527.1| - 0.03 14.4 0.0 0.089 12.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF835 PF05763.7 gi|397781054|ref|YP_006545527.1| - 0.038 13.5 0.1 0.065 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF835) DnaB_C PF03796.10 gi|397781054|ref|YP_006545527.1| - 0.039 12.8 0.1 0.23 10.3 0.0 1.8 1 1 0 2 2 2 0 DnaB-like helicase C terminal domain Elong_Iki1 PF10483.4 gi|397781054|ref|YP_006545527.1| - 0.04 13.3 0.0 0.05 12.9 0.0 1.2 1 0 0 1 1 1 0 Elongator subunit Iki1 AAA_15 PF13175.1 gi|397781054|ref|YP_006545527.1| - 0.13 11.2 0.2 0.47 9.4 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain Arch_flagellin PF01917.11 gi|397781055|ref|YP_006545528.1| - 0.052 13.1 3.7 0.11 12.1 2.6 1.6 1 1 0 1 1 1 0 Archaebacterial flagellin Peptidase_M35 PF02102.10 gi|397781055|ref|YP_006545528.1| - 0.11 11.1 0.1 0.14 10.7 0.1 1.1 1 0 0 1 1 1 0 Deuterolysin metalloprotease (M35) family Arch_flagellin PF01917.11 gi|397781056|ref|YP_006545529.1| - 2.6e-06 27.2 0.4 1.7e-05 24.5 0.3 1.9 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_fla_DE PF04659.8 gi|397781057|ref|YP_006545530.1| - 9.9e-05 22.0 0.0 0.00019 21.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal flagella protein Arch_flagellin PF01917.11 gi|397781058|ref|YP_006545531.1| - 4.7e-30 104.6 4.0 6.6e-30 104.1 2.8 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|397781059|ref|YP_006545532.1| - 1.2e-27 96.7 1.2 1.7e-27 96.3 0.8 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin PDDEXK_3 PF13366.1 gi|397781061|ref|YP_006545534.1| - 6.1e-37 126.2 0.0 7.2e-37 126.0 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|397781061|ref|YP_006545534.1| - 0.016 15.1 0.0 0.017 15.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF83 Arginase PF00491.16 gi|397781062|ref|YP_006545535.1| - 1.1e-70 238.0 0.9 1.3e-70 237.8 0.6 1.0 1 0 0 1 1 1 1 Arginase family eIF-5a PF01287.15 gi|590000702|ref|YP_006545536.2| - 2.2e-08 33.9 0.3 3.9e-08 33.1 0.2 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|590000702|ref|YP_006545536.2| - 0.00016 21.4 0.0 0.00032 20.5 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.15 gi|590000702|ref|YP_006545536.2| - 0.074 12.7 0.2 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain Inositol_P PF00459.20 gi|397781063|ref|YP_006545537.1| - 1e-37 129.9 0.0 1.2e-37 129.7 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|397781063|ref|YP_006545537.1| - 0.00049 19.0 0.0 0.00073 18.4 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase DUF1515 PF07439.6 gi|397781063|ref|YP_006545537.1| - 0.078 12.7 0.0 0.21 11.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1515) NAD_kinase PF01513.16 gi|397781065|ref|YP_006545538.1| - 5.2e-53 179.6 0.0 5.7e-53 179.5 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|397781065|ref|YP_006545538.1| - 0.1 12.0 0.1 0.18 11.2 0.1 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain DUF169 PF02596.10 gi|397781066|ref|YP_006545539.1| - 5.5e-68 228.6 0.0 6.2e-68 228.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 ACT PF01842.20 gi|397781067|ref|YP_006545540.1| - 2e-05 23.9 1.2 0.0023 17.3 0.1 2.6 2 1 1 3 3 3 2 ACT domain T2SM_b PF10741.4 gi|397781067|ref|YP_006545540.1| - 0.047 13.3 1.1 0.38 10.3 0.1 2.1 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M subtype b Radical_SAM PF04055.16 gi|397781067|ref|YP_006545540.1| - 0.081 13.0 0.2 0.69 10.0 0.2 2.0 1 1 0 1 1 1 0 Radical SAM superfamily Saccharop_dh_N PF04455.7 gi|397781067|ref|YP_006545540.1| - 0.095 12.8 0.2 0.53 10.4 0.0 2.0 1 1 1 2 2 2 0 LOR/SDH bifunctional enzyme conserved region ACT_5 PF13710.1 gi|397781067|ref|YP_006545540.1| - 0.62 9.9 3.2 3.3 7.5 0.7 2.6 2 1 0 2 2 2 0 ACT domain Homoserine_dh PF00742.14 gi|397781068|ref|YP_006545541.1| - 5.8e-58 195.4 0.1 8.9e-58 194.8 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|397781068|ref|YP_006545541.1| - 4e-11 43.3 0.1 8.1e-11 42.3 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|397781068|ref|YP_006545541.1| - 0.0077 15.8 0.1 0.015 14.8 0.0 1.6 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase F420_oxidored PF03807.12 gi|397781068|ref|YP_006545541.1| - 0.0094 16.3 1.8 0.043 14.2 1.3 2.3 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|397781068|ref|YP_006545541.1| - 0.025 14.2 0.6 0.044 13.4 0.4 1.5 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|397781068|ref|YP_006545541.1| - 0.04 13.7 0.0 0.068 13.0 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.19 gi|397781068|ref|YP_006545541.1| - 0.056 13.4 0.9 0.15 12.0 0.2 1.9 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TrmB PF01978.14 gi|397781069|ref|YP_006545542.1| - 1.3e-07 31.2 0.0 2.3e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|397781069|ref|YP_006545542.1| - 1.2e-06 27.9 1.1 1.2e-05 24.7 0.0 3.0 4 0 0 4 4 4 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|397781069|ref|YP_006545542.1| - 2.6e-05 23.8 0.0 7.8e-05 22.2 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|397781069|ref|YP_006545542.1| - 3.9e-05 23.1 0.1 9.4e-05 21.9 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|397781069|ref|YP_006545542.1| - 5.5e-05 23.2 0.1 0.00012 22.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|397781069|ref|YP_006545542.1| - 0.00012 21.9 0.0 0.00031 20.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_43 PF09904.4 gi|397781069|ref|YP_006545542.1| - 0.011 15.5 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DUF1743 PF08489.6 gi|397781069|ref|YP_006545542.1| - 0.011 15.4 0.1 1.6 8.5 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1743) Terminase_5 PF06056.7 gi|397781069|ref|YP_006545542.1| - 0.012 15.1 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Fe_dep_repress PF01325.14 gi|397781069|ref|YP_006545542.1| - 0.015 15.2 0.0 0.051 13.5 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain PCI PF01399.22 gi|397781069|ref|YP_006545542.1| - 0.03 14.6 0.0 0.057 13.7 0.0 1.3 1 0 0 1 1 1 0 PCI domain HTH_20 PF12840.2 gi|397781069|ref|YP_006545542.1| - 0.034 13.9 0.2 0.12 12.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|397781069|ref|YP_006545542.1| - 0.045 13.1 0.0 0.1 12.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|397781069|ref|YP_006545542.1| - 0.077 12.7 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|397781069|ref|YP_006545542.1| - 0.13 12.3 0.0 0.32 11.1 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.15 gi|397781069|ref|YP_006545542.1| - 0.13 11.9 0.0 0.45 10.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF2284 PF10050.4 gi|397781070|ref|YP_006545543.1| - 5.1e-49 166.0 0.0 5.8e-49 165.8 0.0 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) NAD_binding_5 PF07994.7 gi|397781071|ref|YP_006545544.1| - 4.8e-58 196.9 0.0 1.3e-57 195.5 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|397781071|ref|YP_006545544.1| - 3.4e-32 110.5 0.0 4.7e-32 110.1 0.0 1.2 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Fae PF08714.6 gi|397781072|ref|YP_006545545.1| - 9.5e-71 236.6 1.1 1.1e-70 236.5 0.8 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) AA_permease_2 PF13520.1 gi|397781073|ref|YP_006545546.1| - 1.3e-50 172.1 42.8 1.6e-50 171.8 29.7 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|397781073|ref|YP_006545546.1| - 9.4e-42 142.9 38.3 1.2e-41 142.6 26.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|397781073|ref|YP_006545546.1| - 0.0048 16.7 0.5 0.0048 16.7 0.4 4.1 4 1 1 5 5 5 1 C-terminus of AA_permease PrsW-protease PF13367.1 gi|397781074|ref|YP_006545547.1| - 7.4e-40 136.1 18.0 1e-39 135.7 12.5 1.1 1 0 0 1 1 1 1 Protease prsW family NAD_binding_7 PF13241.1 gi|397781076|ref|YP_006545549.1| - 3.1e-22 78.7 0.0 4.6e-22 78.2 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|397781076|ref|YP_006545549.1| - 0.00086 18.3 0.0 0.0009 18.3 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase YopR_core PF09025.5 gi|397781076|ref|YP_006545549.1| - 0.0076 16.2 0.1 0.12 12.3 0.0 2.1 2 0 0 2 2 2 1 YopR Core NAD_binding_10 PF13460.1 gi|397781076|ref|YP_006545549.1| - 0.0079 16.2 0.1 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Shikimate_DH PF01488.15 gi|397781076|ref|YP_006545549.1| - 0.021 14.9 0.0 0.039 14.0 0.0 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Pyr_redox PF00070.22 gi|397781076|ref|YP_006545549.1| - 0.023 15.1 0.2 0.07 13.5 0.1 1.9 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|397781077|ref|YP_006545550.1| - 5.8e-35 120.3 0.0 1e-34 119.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.10 gi|397781077|ref|YP_006545550.1| - 5.3e-31 107.2 0.0 8.9e-31 106.5 0.0 1.4 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.15 gi|397781077|ref|YP_006545550.1| - 1.6e-17 63.2 1.1 3.2e-17 62.3 0.8 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|397781077|ref|YP_006545550.1| - 0.00011 22.4 0.0 0.00034 20.9 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.10 gi|397781077|ref|YP_006545550.1| - 0.0013 17.6 0.3 0.0021 16.8 0.2 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family 2-Hacid_dh_C PF02826.14 gi|397781077|ref|YP_006545550.1| - 0.0026 16.9 0.1 0.0049 16.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|397781077|ref|YP_006545550.1| - 0.003 17.4 0.0 0.0061 16.4 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|397781077|ref|YP_006545550.1| - 0.0089 15.0 0.1 0.014 14.3 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|397781077|ref|YP_006545550.1| - 0.029 14.6 0.1 0.1 12.8 0.0 1.9 1 0 0 1 1 1 0 Putative NAD(P)-binding ALAD PF00490.16 gi|397781078|ref|YP_006545551.1| - 2.6e-133 443.8 0.0 3e-133 443.7 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase DUF3918 PF13056.1 gi|397781078|ref|YP_006545551.1| - 0.69 9.2 6.7 3.1 7.1 2.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3918) Aminotran_3 PF00202.16 gi|397781079|ref|YP_006545552.1| - 2.7e-63 213.9 0.0 3.5e-63 213.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Porphobil_deam PF01379.15 gi|397781080|ref|YP_006545553.1| - 3.2e-61 205.9 0.0 4.3e-61 205.5 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|397781080|ref|YP_006545553.1| - 1.2e-07 31.7 0.4 2.4e-07 30.7 0.3 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.15 gi|397781080|ref|YP_006545553.1| - 0.045 12.9 0.0 0.76 8.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 TP_methylase PF00590.15 gi|397781081|ref|YP_006545554.1| - 8.5e-51 172.6 0.7 9.9e-51 172.4 0.5 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases NAD_binding_8 PF13450.1 gi|397781081|ref|YP_006545554.1| - 0.066 13.2 0.4 14 5.8 0.0 3.3 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain ILVD_EDD PF00920.16 gi|397781082|ref|YP_006545555.1| - 1.5e-213 709.9 2.3 1.7e-213 709.7 1.6 1.0 1 0 0 1 1 1 1 Dehydratase family Pro_CA PF00484.14 gi|397781083|ref|YP_006545556.1| - 8e-48 162.3 0.0 9.4e-48 162.0 0.0 1.0 1 0 0 1 1 1 1 Carbonic anhydrase Osmo_CC PF08946.5 gi|397781084|ref|YP_006545557.1| - 0.046 13.7 0.3 0.11 12.5 0.2 1.6 1 1 0 1 1 1 0 Osmosensory transporter coiled coil FMN_red PF03358.10 gi|397781085|ref|YP_006545558.1| - 8.7e-19 67.5 0.0 1.3e-18 66.9 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|397781085|ref|YP_006545558.1| - 0.00011 21.8 0.0 0.00016 21.2 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold Fer4_2 PF12797.2 gi|397781085|ref|YP_006545558.1| - 0.094 12.6 0.9 0.21 11.5 0.6 1.6 1 0 0 1 1 1 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|397781085|ref|YP_006545558.1| - 0.38 10.7 3.4 0.8 9.6 2.4 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain CPSase_sm_chain PF00988.17 gi|397781086|ref|YP_006545559.1| - 4.2e-43 145.9 0.1 6.2e-43 145.4 0.1 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|397781086|ref|YP_006545559.1| - 2e-37 128.5 0.0 3.2e-37 127.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|397781086|ref|YP_006545559.1| - 6.5e-11 42.0 0.2 3e-09 36.6 0.1 2.3 1 1 0 1 1 1 1 Peptidase C26 CPSase_L_D2 PF02786.12 gi|397781087|ref|YP_006545560.1| - 1.9e-105 350.7 0.1 1.2e-67 227.2 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|397781087|ref|YP_006545560.1| - 5.3e-48 161.7 1.0 6.8e-25 87.3 0.0 3.4 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|397781087|ref|YP_006545560.1| - 3.3e-42 144.2 0.0 6e-20 71.7 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_D3 PF02787.14 gi|397781087|ref|YP_006545560.1| - 3.5e-33 113.9 0.0 9.7e-33 112.5 0.0 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|397781087|ref|YP_006545560.1| - 4e-26 91.5 0.0 2.5e-07 29.7 0.0 4.2 4 0 0 4 4 4 4 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|397781087|ref|YP_006545560.1| - 6.2e-21 74.1 0.1 2.3e-19 69.0 0.0 3.3 4 0 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.17 gi|397781087|ref|YP_006545560.1| - 3e-16 59.2 0.0 5.4e-07 29.1 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|397781087|ref|YP_006545560.1| - 6.1e-15 55.1 0.0 2.4e-06 27.0 0.0 3.2 2 2 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|397781087|ref|YP_006545560.1| - 2.9e-13 50.0 0.0 5.6e-06 26.3 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.14 gi|397781087|ref|YP_006545560.1| - 6.3e-08 32.4 0.0 0.0023 17.4 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|397781087|ref|YP_006545560.1| - 0.0018 17.5 0.0 0.28 10.3 0.0 3.3 4 0 0 4 4 4 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|397781087|ref|YP_006545560.1| - 0.0057 16.0 0.1 2.7 7.3 0.0 3.5 4 0 0 4 4 4 1 ATP-grasp domain DUF2857 PF11198.3 gi|397781087|ref|YP_006545560.1| - 0.029 13.9 0.0 0.078 12.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2857) Jag_N PF14804.1 gi|397781087|ref|YP_006545560.1| - 0.11 12.5 2.6 0.22 11.5 0.0 2.8 3 0 0 3 3 2 0 Jag N-terminus OpuAC PF04069.7 gi|397781088|ref|YP_006545561.1| - 1.1e-71 241.2 1.3 1.2e-71 241.0 0.9 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system OpuAC PF04069.7 gi|397781089|ref|YP_006545562.1| - 2.2e-69 233.6 0.5 2.6e-69 233.4 0.4 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.17 gi|397781090|ref|YP_006545563.1| - 2.1e-26 92.5 14.4 2.1e-26 92.5 10.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Herpes_LMP1 PF05297.6 gi|397781090|ref|YP_006545563.1| - 1.9 7.3 11.6 2.8 6.7 8.1 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) ABC_tran PF00005.22 gi|397781091|ref|YP_006545564.1| - 2e-31 109.1 0.0 3.2e-31 108.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter CBS PF00571.23 gi|397781091|ref|YP_006545564.1| - 6e-16 57.9 1.6 7.6e-07 28.8 0.1 2.6 2 0 0 2 2 2 2 CBS domain AAA_21 PF13304.1 gi|397781091|ref|YP_006545564.1| - 1.7e-11 44.6 0.1 1.3e-06 28.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|397781091|ref|YP_006545564.1| - 0.00014 21.3 0.7 0.032 13.6 0.1 2.2 1 1 1 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|397781091|ref|YP_006545564.1| - 0.00017 21.6 0.5 0.00064 19.7 0.3 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|397781091|ref|YP_006545564.1| - 0.00051 19.5 0.0 0.0009 18.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|397781091|ref|YP_006545564.1| - 0.0033 17.5 1.0 0.077 13.1 0.7 2.5 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|397781091|ref|YP_006545564.1| - 0.0062 15.7 0.0 0.015 14.4 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|397781091|ref|YP_006545564.1| - 0.0072 16.2 0.0 0.014 15.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|397781091|ref|YP_006545564.1| - 0.0084 14.7 0.1 1.2 7.6 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|397781091|ref|YP_006545564.1| - 0.014 15.7 0.0 0.025 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|397781091|ref|YP_006545564.1| - 0.017 14.1 0.0 3.3 6.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|397781091|ref|YP_006545564.1| - 0.019 14.6 0.0 0.054 13.2 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|397781091|ref|YP_006545564.1| - 0.021 14.3 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|397781091|ref|YP_006545564.1| - 0.036 13.1 0.0 0.059 12.4 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin APS_kinase PF01583.15 gi|397781091|ref|YP_006545564.1| - 0.053 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase PEPCK_ATP PF01293.15 gi|397781091|ref|YP_006545564.1| - 0.25 9.8 0.0 0.39 9.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Arginosuc_synth PF00764.14 gi|397781092|ref|YP_006545565.1| - 5.9e-166 552.2 0.0 6.8e-166 552.1 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|397781092|ref|YP_006545565.1| - 0.0012 18.4 0.0 0.0017 17.9 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|397781092|ref|YP_006545565.1| - 0.0027 17.0 0.0 0.0052 16.1 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|397781092|ref|YP_006545565.1| - 0.011 14.6 0.0 0.022 13.6 0.0 1.4 2 0 0 2 2 2 0 NAD synthase ArgK PF03308.11 gi|397781092|ref|YP_006545565.1| - 0.078 11.7 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Pyridox_oxidase PF01243.15 gi|397781093|ref|YP_006545566.1| - 2.1e-17 62.9 0.0 2.8e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|397781093|ref|YP_006545566.1| - 0.018 14.6 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) DUF2114 PF09887.4 gi|397781094|ref|YP_006545567.1| - 1.2e-228 758.8 0.1 1.3e-228 758.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) OTCace PF00185.19 gi|397781096|ref|YP_006545569.1| - 3.7e-54 182.8 0.0 1.3e-53 181.0 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|397781096|ref|YP_006545569.1| - 6.6e-51 171.6 0.1 9.6e-51 171.1 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OCD_Mu_crystall PF02423.10 gi|397781096|ref|YP_006545569.1| - 0.071 11.8 0.0 0.11 11.1 0.0 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family GARS_A PF01071.14 gi|397781097|ref|YP_006545570.1| - 5.8e-57 192.4 0.0 8.3e-57 191.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|397781097|ref|YP_006545570.1| - 1e-30 106.1 0.2 2.2e-30 105.0 0.2 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|397781097|ref|YP_006545570.1| - 7.2e-20 70.9 0.8 2.4e-19 69.2 0.0 2.3 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|397781097|ref|YP_006545570.1| - 7.8e-16 58.3 0.0 1.6e-15 57.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|397781097|ref|YP_006545570.1| - 1.3e-07 30.6 0.0 1.8e-06 26.9 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|397781097|ref|YP_006545570.1| - 0.0011 18.8 0.0 0.0019 18.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|397781097|ref|YP_006545570.1| - 0.0043 16.5 0.0 0.0085 15.5 0.0 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain DUF2007 PF09413.5 gi|397781097|ref|YP_006545570.1| - 0.026 14.3 0.0 3.6 7.4 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF2007) ATP-grasp PF02222.17 gi|397781097|ref|YP_006545570.1| - 0.028 13.7 0.0 0.39 10.0 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp domain Phage_GPD PF05954.6 gi|397781097|ref|YP_006545570.1| - 0.1 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Phage late control gene D protein (GPD) Pribosyltran PF00156.22 gi|397781098|ref|YP_006545571.1| - 4.8e-14 52.1 2.6 8.2e-14 51.3 1.8 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pro_Al_protease PF02983.9 gi|397781098|ref|YP_006545571.1| - 4.7 7.2 7.7 24 4.9 0.1 2.5 2 0 0 2 2 2 0 Alpha-lytic protease prodomain DUF46 PF01864.12 gi|590000704|ref|YP_006545572.2| - 3e-46 157.4 1.5 3.5e-46 157.2 1.0 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|590000704|ref|YP_006545572.2| - 1e-07 31.9 0.7 1e-07 31.9 0.5 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family DUF204 PF02659.10 gi|590000704|ref|YP_006545572.2| - 0.48 10.5 3.5 15 5.8 0.1 2.8 3 1 0 3 3 3 0 Domain of unknown function DUF Radical_SAM PF04055.16 gi|397781100|ref|YP_006545573.1| - 1.6e-21 77.1 2.3 7.2e-20 71.8 0.0 2.6 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|397781100|ref|YP_006545573.1| - 1.3e-08 34.8 0.3 6.6e-08 32.5 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|397781100|ref|YP_006545573.1| - 2.6e-07 30.8 0.4 1.2e-06 28.7 0.0 2.0 1 1 1 2 2 2 1 4Fe-4S single cluster domain GHL1-3 PF11308.3 gi|397781100|ref|YP_006545573.1| - 0.063 12.6 0.0 15 4.8 0.0 2.8 3 0 0 3 3 3 0 Glycosyl hydrolases related to GH101 family, GHL1-GHL3 TF_Zn_Ribbon PF08271.7 gi|397781100|ref|YP_006545573.1| - 0.65 9.3 8.5 0.58 9.5 0.1 3.5 4 0 0 4 4 4 0 TFIIB zinc-binding OCD_Mu_crystall PF02423.10 gi|397781101|ref|YP_006545574.1| - 7.7e-90 300.8 1.7 9.8e-90 300.4 1.2 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|397781101|ref|YP_006545574.1| - 2.5e-08 34.0 0.0 4.9e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|397781101|ref|YP_006545574.1| - 4.8e-07 30.1 0.0 9.2e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|397781101|ref|YP_006545574.1| - 0.054 12.4 0.0 0.079 11.9 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|397781101|ref|YP_006545574.1| - 0.12 11.5 0.0 0.42 9.7 0.0 1.8 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1628 PF07790.6 gi|590000706|ref|YP_006545575.2| - 3e-05 24.6 0.0 6.4e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF3309 PF11752.3 gi|590000706|ref|YP_006545575.2| - 0.32 10.8 3.5 0.55 10.0 2.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3309) Usp PF00582.21 gi|397781103|ref|YP_006545576.1| - 3.8e-36 124.3 2.8 4.4e-36 124.1 1.9 1.0 1 0 0 1 1 1 1 Universal stress protein family PDDEXK_1 PF12705.2 gi|397781103|ref|YP_006545576.1| - 0.036 13.4 0.0 0.045 13.1 0.0 1.0 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF99 PF01949.11 gi|397781105|ref|YP_006545577.1| - 4.3e-62 208.5 0.0 4.9e-62 208.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Glycos_transf_2 PF00535.21 gi|397781104|ref|YP_006545578.1| - 2.1e-21 76.3 0.0 3.6e-21 75.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|397781104|ref|YP_006545578.1| - 5.4e-10 39.4 0.0 7.6e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|397781104|ref|YP_006545578.1| - 4.9e-05 23.5 0.0 0.00015 21.9 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 DUF751 PF05421.6 gi|397781104|ref|YP_006545578.1| - 0.05 13.9 5.6 0.073 13.3 2.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF751) HTH_39 PF14090.1 gi|397781104|ref|YP_006545578.1| - 0.12 11.8 0.5 0.41 10.1 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain Aldolase_II PF00596.16 gi|590000707|ref|YP_006545579.2| - 7.6e-35 120.1 0.0 8.7e-35 119.9 0.0 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain F420_oxidored PF03807.12 gi|397781107|ref|YP_006545580.1| - 2.7e-17 62.9 0.0 4.3e-17 62.3 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.12 gi|397781107|ref|YP_006545580.1| - 0.0015 17.4 0.1 0.005 15.7 0.0 1.7 2 0 0 2 2 2 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|397781107|ref|YP_006545580.1| - 0.0029 17.3 0.0 0.0048 16.6 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.19 gi|397781107|ref|YP_006545580.1| - 0.12 12.7 0.1 0.31 11.3 0.0 1.8 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Thioredoxin PF00085.15 gi|397781108|ref|YP_006545581.1| - 1.1e-19 69.9 0.0 1.4e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|397781108|ref|YP_006545581.1| - 1.7e-10 41.0 0.1 3.7e-10 39.9 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|397781108|ref|YP_006545581.1| - 4.3e-10 39.5 0.0 6.6e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|397781108|ref|YP_006545581.1| - 3.5e-06 26.9 0.0 5.2e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.5 gi|397781108|ref|YP_006545581.1| - 1.4e-05 24.6 0.0 2.9e-05 23.6 0.0 1.5 1 1 1 2 2 2 1 Redoxin AhpC-TSA PF00578.16 gi|397781108|ref|YP_006545581.1| - 9.2e-05 22.1 0.0 0.00011 21.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family DSBA PF01323.15 gi|397781108|ref|YP_006545581.1| - 0.00023 20.7 0.0 0.048 13.2 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain TraF PF13728.1 gi|397781108|ref|YP_006545581.1| - 0.0011 18.4 0.0 0.0014 18.1 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.1 gi|397781108|ref|YP_006545581.1| - 0.0016 18.2 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain DUF953 PF06110.6 gi|397781108|ref|YP_006545581.1| - 0.0018 17.6 0.0 0.0025 17.2 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF953) Glutaredoxin PF00462.19 gi|397781108|ref|YP_006545581.1| - 0.01 15.8 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin Thioredoxin_9 PF14595.1 gi|397781108|ref|YP_006545581.1| - 0.01 15.3 0.0 0.013 15.0 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin HyaE PF07449.6 gi|397781108|ref|YP_006545581.1| - 0.068 13.0 0.0 0.076 12.9 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE TrbC_Ftype PF09673.5 gi|397781108|ref|YP_006545581.1| - 0.087 12.4 0.0 0.12 11.9 0.0 1.3 1 1 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein SecD_SecF PF02355.11 gi|397781109|ref|YP_006545582.1| - 1.2e-10 40.9 10.9 1.2e-10 40.9 7.6 2.0 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|397781109|ref|YP_006545582.1| - 0.00098 18.2 0.1 0.0025 16.9 0.1 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.10 gi|397781109|ref|YP_006545582.1| - 0.12 11.1 19.6 0.19 10.4 13.6 1.3 1 0 0 1 1 1 0 MMPL family SecD_SecF PF02355.11 gi|397781110|ref|YP_006545583.1| - 1.7e-36 125.2 11.3 2.7e-36 124.5 7.8 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|397781110|ref|YP_006545583.1| - 0.0059 15.7 0.1 0.016 14.3 0.1 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif Bax1-I PF01027.15 gi|397781110|ref|YP_006545583.1| - 6.7 6.2 24.9 0.094 12.3 8.9 2.6 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 DUF2551 PF10826.3 gi|397781111|ref|YP_006545584.1| - 4.5e-35 119.3 0.4 5.3e-35 119.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.11 gi|397781111|ref|YP_006545584.1| - 0.059 13.4 0.0 0.074 13.1 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor Archease PF01951.11 gi|397781113|ref|YP_006545586.1| - 2.9e-34 117.9 0.0 3.2e-34 117.8 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.12 gi|397781114|ref|YP_006545587.1| - 6.5e-152 506.3 0.0 7.3e-152 506.2 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DDE_Tnp_1_2 PF13586.1 gi|397781114|ref|YP_006545587.1| - 0.14 12.3 0.1 26 5.0 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain BPL_N PF09825.4 gi|397781115|ref|YP_006545588.1| - 0.0013 17.5 0.1 0.027 13.2 0.0 2.0 2 0 0 2 2 2 2 Biotin-protein ligase, N terminal DUF2111 PF09884.4 gi|397781116|ref|YP_006545589.1| - 1e-34 118.1 1.2 1.4e-34 117.7 0.8 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) TPR_10 PF13374.1 gi|397781116|ref|YP_006545589.1| - 0.13 12.2 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat BPL_LplA_LipB PF03099.14 gi|397781117|ref|YP_006545590.1| - 3.7e-18 65.7 0.0 5.9e-18 65.0 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|397781117|ref|YP_006545590.1| - 1.3e-15 56.7 0.0 2.7e-15 55.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|397781117|ref|YP_006545590.1| - 1.8e-10 40.3 0.3 4.2e-10 39.1 0.2 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|397781117|ref|YP_006545590.1| - 1.2e-07 30.9 0.0 2.4e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|397781117|ref|YP_006545590.1| - 0.00025 20.6 0.0 0.0012 18.5 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_1 PF00126.22 gi|397781117|ref|YP_006545590.1| - 0.00045 19.8 0.1 0.0092 15.6 0.0 2.6 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_AsnC-type PF13404.1 gi|397781117|ref|YP_006545590.1| - 0.00079 18.9 0.0 0.002 17.6 0.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|397781117|ref|YP_006545590.1| - 0.0021 17.5 0.0 0.0049 16.4 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|397781117|ref|YP_006545590.1| - 0.0037 17.1 0.0 0.0067 16.3 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|397781117|ref|YP_006545590.1| - 0.004 17.2 0.0 0.026 14.6 0.0 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|397781117|ref|YP_006545590.1| - 0.0053 16.8 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_39 PF14090.1 gi|397781117|ref|YP_006545590.1| - 0.0068 15.8 0.0 0.019 14.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|397781117|ref|YP_006545590.1| - 0.014 15.0 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|397781117|ref|YP_006545590.1| - 0.018 14.7 0.0 0.043 13.5 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.1 gi|397781117|ref|YP_006545590.1| - 0.037 13.8 0.0 0.13 12.1 0.0 1.9 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|397781117|ref|YP_006545590.1| - 0.07 12.8 0.1 0.24 11.1 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain BioY PF02632.9 gi|397781118|ref|YP_006545591.1| - 4.3e-39 133.5 19.2 5.5e-39 133.1 13.3 1.1 1 0 0 1 1 1 1 BioY family DUF3816 PF12822.2 gi|397781118|ref|YP_006545591.1| - 1 9.2 22.7 3.5 7.4 15.8 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) Tic20 PF09685.5 gi|397781118|ref|YP_006545591.1| - 3.1 7.8 15.0 0.6 10.1 3.2 2.2 1 1 0 2 2 2 0 Tic20-like protein ABC_tran PF00005.22 gi|397781119|ref|YP_006545592.1| - 4.9e-21 75.4 0.0 7.2e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|397781119|ref|YP_006545592.1| - 5.4e-10 38.8 0.0 4.5e-05 22.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|397781119|ref|YP_006545592.1| - 1.9e-08 34.6 0.0 2.2e-05 24.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|397781119|ref|YP_006545592.1| - 1.8e-05 24.8 0.1 0.023 14.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|397781119|ref|YP_006545592.1| - 6.7e-05 22.4 0.1 0.089 12.2 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain DEAD PF00270.24 gi|397781119|ref|YP_006545592.1| - 0.00026 20.5 0.0 0.099 12.1 0.0 2.1 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|397781119|ref|YP_006545592.1| - 0.00028 20.9 1.3 0.00092 19.2 0.9 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|397781119|ref|YP_006545592.1| - 0.00053 19.6 0.5 0.29 10.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|397781119|ref|YP_006545592.1| - 0.0015 18.4 0.9 0.0094 15.8 0.6 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|397781119|ref|YP_006545592.1| - 0.0023 17.3 0.0 0.0055 16.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|397781119|ref|YP_006545592.1| - 0.0026 17.9 0.2 0.092 12.9 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|397781119|ref|YP_006545592.1| - 0.0081 16.5 0.0 0.011 16.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|397781119|ref|YP_006545592.1| - 0.014 14.9 0.2 0.067 12.6 0.1 2.0 1 1 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|397781119|ref|YP_006545592.1| - 0.021 14.4 0.1 0.078 12.6 0.0 1.9 2 1 0 2 2 2 0 NACHT domain DUF3035 PF11233.3 gi|397781119|ref|YP_006545592.1| - 0.031 14.3 0.2 0.049 13.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3035) AAA_17 PF13207.1 gi|397781119|ref|YP_006545592.1| - 0.034 14.9 0.4 0.073 13.8 0.2 1.6 2 0 0 2 2 1 0 AAA domain MobB PF03205.9 gi|397781119|ref|YP_006545592.1| - 0.077 12.7 0.1 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|397781119|ref|YP_006545592.1| - 0.08 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DLIC PF05783.6 gi|397781119|ref|YP_006545592.1| - 0.091 11.4 0.0 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ETF PF01012.16 gi|397781119|ref|YP_006545592.1| - 0.096 12.3 1.6 0.15 11.7 1.1 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein domain ATP_bind_1 PF03029.12 gi|397781119|ref|YP_006545592.1| - 0.1 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|397781119|ref|YP_006545592.1| - 0.12 12.9 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_33 PF13671.1 gi|397781119|ref|YP_006545592.1| - 0.12 12.2 0.1 0.53 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|397781119|ref|YP_006545592.1| - 0.13 12.2 0.3 0.39 10.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|397781119|ref|YP_006545592.1| - 0.14 11.9 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF87 PhoH PF02562.11 gi|397781119|ref|YP_006545592.1| - 0.15 11.2 0.0 0.34 10.1 0.0 1.5 2 0 0 2 2 2 0 PhoH-like protein AAA_13 PF13166.1 gi|397781119|ref|YP_006545592.1| - 0.19 10.1 0.0 1 7.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|397781120|ref|YP_006545593.1| - 9e-13 48.7 0.1 1.4e-10 41.5 0.0 2.1 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397781120|ref|YP_006545593.1| - 1e-06 28.9 0.0 0.00025 21.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397781120|ref|YP_006545593.1| - 8.1e-05 21.9 0.0 0.041 13.1 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|397781120|ref|YP_006545593.1| - 0.00052 20.8 0.1 0.001 19.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|397781120|ref|YP_006545593.1| - 0.0037 16.7 0.1 0.0061 16.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|397781120|ref|YP_006545593.1| - 0.0059 16.9 0.0 0.0087 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|397781120|ref|YP_006545593.1| - 0.012 15.6 0.1 0.02 14.8 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|397781120|ref|YP_006545593.1| - 0.012 15.7 0.0 0.02 15.0 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|397781120|ref|YP_006545593.1| - 0.02 14.2 0.1 0.2 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|397781120|ref|YP_006545593.1| - 0.023 14.4 0.2 0.048 13.4 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain SbcCD_C PF13558.1 gi|397781120|ref|YP_006545593.1| - 0.043 13.7 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|397781120|ref|YP_006545593.1| - 0.14 11.5 0.1 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_23 PF13476.1 gi|397781120|ref|YP_006545593.1| - 0.2 11.9 0.2 0.3 11.3 0.1 1.1 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|397781120|ref|YP_006545593.1| - 0.22 10.3 0.6 0.33 9.8 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein CbiQ PF02361.11 gi|397781121|ref|YP_006545594.1| - 0.039 13.5 10.2 0.79 9.2 7.1 2.2 1 1 0 1 1 1 0 Cobalt transport protein PYC_OADA PF02436.13 gi|397781122|ref|YP_006545595.1| - 3.6e-64 215.8 0.3 1.9e-63 213.4 0.0 2.1 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|397781122|ref|YP_006545595.1| - 1.3e-40 139.6 0.0 1.7e-40 139.1 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|397781122|ref|YP_006545595.1| - 9.9e-20 69.9 2.3 2.4e-19 68.7 1.6 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|397781122|ref|YP_006545595.1| - 3.6e-12 45.7 0.7 4.4e-05 23.0 0.1 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.1 gi|397781122|ref|YP_006545595.1| - 5.3e-06 26.7 1.0 0.0091 16.3 0.0 3.2 3 0 0 3 3 3 2 HlyD family secretion protein HlyD PF00529.15 gi|397781122|ref|YP_006545595.1| - 4.8e-05 22.8 1.3 0.017 14.4 0.1 2.3 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|397781122|ref|YP_006545595.1| - 0.00033 19.9 0.4 0.24 10.5 0.0 2.3 1 1 1 2 2 2 2 HlyD family secretion protein GCV_H PF01597.14 gi|397781122|ref|YP_006545595.1| - 0.0049 16.5 0.1 0.011 15.4 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage H-protein CPSase_L_D2 PF02786.12 gi|397781123|ref|YP_006545596.1| - 5.1e-76 254.6 0.3 7.2e-76 254.1 0.2 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|397781123|ref|YP_006545596.1| - 1.7e-43 147.2 0.0 4.4e-43 145.8 0.0 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|397781123|ref|YP_006545596.1| - 1.6e-39 134.1 0.0 3.6e-39 133.0 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATPgrasp_Ter PF15632.1 gi|397781123|ref|YP_006545596.1| - 2e-14 53.0 0.0 4.5e-14 51.9 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|397781123|ref|YP_006545596.1| - 1.2e-13 51.2 0.0 2.1e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|397781123|ref|YP_006545596.1| - 1.2e-11 44.4 0.0 2.6e-11 43.3 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|397781123|ref|YP_006545596.1| - 5.3e-11 42.3 0.1 2e-10 40.4 0.0 1.9 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|397781123|ref|YP_006545596.1| - 3.7e-06 26.8 0.0 6.2e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|397781123|ref|YP_006545596.1| - 7.9e-06 25.3 0.0 1.4e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|397781123|ref|YP_006545596.1| - 3.1e-05 23.6 0.0 5.7e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|397781123|ref|YP_006545596.1| - 0.0023 17.1 0.0 0.0048 16.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain zf-ribbon_3 PF13248.1 gi|590000708|ref|YP_009001428.1| - 5.1e-05 22.3 1.2 0.0001 21.3 0.8 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|590000708|ref|YP_009001428.1| - 0.00038 20.2 1.4 0.00072 19.3 0.9 1.5 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|590000708|ref|YP_009001428.1| - 0.011 15.2 2.6 0.025 14.0 1.8 1.7 1 0 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|590000708|ref|YP_009001428.1| - 0.13 11.9 1.0 0.43 10.3 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit RecR PF02132.10 gi|590000708|ref|YP_009001428.1| - 0.5 9.8 2.7 11 5.5 1.9 2.5 1 1 0 1 1 1 0 RecR protein Nudix_N_2 PF14803.1 gi|590000708|ref|YP_009001428.1| - 2.4 7.9 6.2 18 5.1 0.1 3.1 3 0 0 3 3 3 0 Nudix N-terminal Fic PF02661.13 gi|397781126|ref|YP_006545599.1| - 1.4e-25 89.7 0.8 5.2e-25 87.9 0.0 2.3 3 0 0 3 3 3 1 Fic/DOC family DUF3109 PF11307.3 gi|397781127|ref|YP_006545600.1| - 0.02 14.3 0.0 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3109) DZR PF12773.2 gi|397781127|ref|YP_006545600.1| - 0.043 13.6 0.1 0.058 13.2 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Amnionless PF14828.1 gi|397781127|ref|YP_006545600.1| - 0.093 11.2 0.1 0.11 10.9 0.1 1.0 1 0 0 1 1 1 0 Amnionless zf-NADH-PPase PF09297.6 gi|397781127|ref|YP_006545600.1| - 2.7 7.5 7.8 0.46 10.0 0.4 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain NTP_transf_2 PF01909.18 gi|397781128|ref|YP_006545601.1| - 7.1e-16 58.3 0.1 8.9e-16 58.0 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF4095 PF13338.1 gi|397781129|ref|YP_006545602.1| - 2e-28 99.0 0.0 2.9e-28 98.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4095) Sulfolobus_pRN PF05584.6 gi|397781129|ref|YP_006545602.1| - 3.7e-07 30.0 0.0 8.3e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_IclR PF09339.5 gi|397781129|ref|YP_006545602.1| - 2.7e-05 23.6 0.0 0.00014 21.3 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|397781129|ref|YP_006545602.1| - 0.00027 20.5 0.1 0.00054 19.5 0.0 1.4 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|397781129|ref|YP_006545602.1| - 0.00028 20.5 0.0 0.00046 19.8 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator TrmB PF01978.14 gi|397781129|ref|YP_006545602.1| - 0.0048 16.5 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_25 PF13413.1 gi|397781129|ref|YP_006545602.1| - 0.0076 15.8 0.1 0.051 13.2 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|397781129|ref|YP_006545602.1| - 0.0099 15.6 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|397781129|ref|YP_006545602.1| - 0.067 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Post_transc_reg PF13797.1 gi|397781129|ref|YP_006545602.1| - 0.12 12.0 0.1 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Post-transcriptional regulator DUF1814 PF08843.6 gi|397781130|ref|YP_006545603.1| - 2.6e-26 92.8 0.2 3.5e-26 92.4 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) HTH_psq PF05225.11 gi|397781130|ref|YP_006545603.1| - 1.7e-05 24.2 0.1 0.0015 18.0 0.0 2.6 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_23 PF13384.1 gi|397781130|ref|YP_006545603.1| - 0.091 12.4 0.0 0.24 11.1 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Hypoth_Ymh PF09509.5 gi|397781130|ref|YP_006545603.1| - 0.098 12.2 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (Hypoth_ymh) HTH_IclR PF09339.5 gi|397781132|ref|YP_006545605.1| - 0.01 15.3 0.1 0.032 13.7 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|397781132|ref|YP_006545605.1| - 0.015 15.5 0.0 0.056 13.7 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|397781132|ref|YP_006545605.1| - 0.097 12.2 0.1 0.41 10.2 0.0 2.1 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain SNF2_N PF00176.18 gi|397781133|ref|YP_006545606.1| - 3.5e-25 88.4 0.0 1.2e-24 86.6 0.0 1.7 1 1 0 1 1 1 1 SNF2 family N-terminal domain DUF3883 PF13020.1 gi|397781133|ref|YP_006545606.1| - 2.5e-17 62.3 0.0 6.6e-17 61.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) Helicase_C PF00271.26 gi|397781133|ref|YP_006545606.1| - 4.9e-16 58.3 0.0 1.5e-15 56.8 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|397781133|ref|YP_006545606.1| - 1.1e-10 41.6 0.0 4.2e-10 39.7 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|397781133|ref|YP_006545606.1| - 3.8e-09 36.2 0.0 1.5e-08 34.3 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|397781133|ref|YP_006545606.1| - 5.8e-05 22.2 0.0 0.00016 20.8 0.0 1.7 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Helicase_RecD PF05127.9 gi|397781133|ref|YP_006545606.1| - 0.012 15.2 0.0 0.037 13.6 0.0 1.8 1 1 0 1 1 1 0 Helicase AAA_22 PF13401.1 gi|397781133|ref|YP_006545606.1| - 0.024 14.8 0.1 0.39 10.8 0.0 3.0 2 1 1 3 3 3 0 AAA domain Atg14 PF10186.4 gi|397781133|ref|YP_006545606.1| - 0.27 10.1 8.4 1.3 7.9 0.3 3.3 3 0 0 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 DUF1156 PF06634.7 gi|397781134|ref|YP_006545607.1| - 3.6e-10 39.4 0.8 6.8e-10 38.5 0.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1156) DUF1016 PF06250.6 gi|397781135|ref|YP_006545608.1| - 3.8e-103 344.8 0.0 3e-78 263.0 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF1016) DUF1156 PF06634.7 gi|397781137|ref|YP_006545610.1| - 1e-27 95.6 1.2 2.6e-27 94.3 0.8 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) MethyltransfD12 PF02086.10 gi|397781137|ref|YP_006545610.1| - 3e-05 23.5 0.0 7.7e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_26 PF13659.1 gi|397781137|ref|YP_006545610.1| - 0.007 16.3 0.0 0.079 12.9 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|397781137|ref|YP_006545610.1| - 0.011 15.3 0.0 1 8.9 0.0 2.5 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 DUF262 PF03235.9 gi|397781138|ref|YP_006545611.1| - 2.6e-30 106.0 5.5 3.2e-30 105.7 2.3 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|397781138|ref|YP_006545611.1| - 3.2e-11 43.2 0.9 9.7e-11 41.7 0.6 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) DUF499 PF04465.7 gi|397781139|ref|YP_006545612.1| - 1.8e-25 88.8 0.0 3.6e-25 87.8 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF499) RbsD_FucU PF05025.8 gi|397781140|ref|YP_006545613.1| - 0.083 13.2 0.0 0.083 13.2 0.0 1.0 1 0 0 1 1 1 0 RbsD / FucU transport protein family NTP_transf_2 PF01909.18 gi|397781141|ref|YP_006545614.1| - 7.7e-15 54.9 0.2 8.8e-15 54.8 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|397781141|ref|YP_006545614.1| - 0.1 12.6 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase beta palm DUF86 PF01934.12 gi|397781142|ref|YP_006545615.1| - 1.5e-28 98.8 0.1 1.8e-28 98.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF759 PF05537.6 gi|397781142|ref|YP_006545615.1| - 0.05 12.3 0.0 0.065 11.9 0.0 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) zf-FCS PF06467.9 gi|397781144|ref|YP_006545617.1| - 0.0044 16.6 0.1 1.5 8.5 0.0 2.2 2 0 0 2 2 2 2 MYM-type Zinc finger with FCS sequence motif YokU PF14122.1 gi|397781144|ref|YP_006545617.1| - 0.0073 16.0 0.1 0.01 15.5 0.1 1.3 1 1 0 1 1 1 1 YokU-like protein Mut7-C PF01927.11 gi|397781144|ref|YP_006545617.1| - 0.023 14.6 0.0 0.026 14.4 0.0 1.1 1 0 0 1 1 1 0 Mut7-C RNAse domain zf-C4_ClpX PF06689.8 gi|397781144|ref|YP_006545617.1| - 0.026 14.0 2.4 0.55 9.7 0.1 2.3 2 0 0 2 2 2 0 ClpX C4-type zinc finger E6 PF00518.12 gi|397781144|ref|YP_006545617.1| - 0.028 14.7 0.3 0.034 14.4 0.2 1.2 1 0 0 1 1 1 0 Early Protein (E6) RNA_pol_N PF01194.12 gi|397781144|ref|YP_006545617.1| - 0.16 12.0 2.8 1 9.4 1.9 2.0 1 1 0 1 1 1 0 RNA polymerases N / 8 kDa subunit zf-dskA_traR PF01258.12 gi|397781144|ref|YP_006545617.1| - 0.33 10.7 0.2 0.33 10.7 0.1 2.6 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger HEAT_2 PF13646.1 gi|397781148|ref|YP_006545621.1| - 2.1e-06 27.9 0.1 4.3e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 HEAT repeats Arm PF00514.18 gi|397781148|ref|YP_006545621.1| - 0.065 13.0 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Armadillo/beta-catenin-like repeat DUF1415 PF07209.7 gi|397781150|ref|YP_006545623.1| - 0.04 13.6 0.1 0.069 12.8 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1415) Cas_APE2256 PF09651.5 gi|397781152|ref|YP_006545624.1| - 8.2e-06 25.5 0.7 0.0018 17.9 0.0 3.1 3 0 0 3 3 3 1 CRISPR-associated protein (Cas_APE2256) Penicillinase_R PF03965.11 gi|397781152|ref|YP_006545624.1| - 0.024 14.7 0.2 0.054 13.5 0.1 1.5 1 0 0 1 1 1 0 Penicillinase repressor NTP_transf_2 PF01909.18 gi|397781153|ref|YP_006545626.1| - 6.4e-06 26.4 0.0 1.1e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_IclR PF09339.5 gi|397781153|ref|YP_006545626.1| - 2.3e-05 23.9 0.1 4.9e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|397781153|ref|YP_006545626.1| - 0.0029 17.2 0.0 0.0053 16.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|397781153|ref|YP_006545626.1| - 0.0087 15.4 0.0 0.028 13.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|397781153|ref|YP_006545626.1| - 0.013 15.1 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|397781153|ref|YP_006545626.1| - 0.018 14.8 0.0 0.037 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|397781153|ref|YP_006545626.1| - 0.025 14.9 0.1 0.097 13.0 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain CBM_X PF06204.6 gi|397781153|ref|YP_006545626.1| - 0.062 12.7 0.0 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 Putative carbohydrate binding domain DUF977 PF06163.6 gi|397781153|ref|YP_006545626.1| - 0.072 12.8 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Adenyl_cycl_N PF12633.2 gi|397781153|ref|YP_006545626.1| - 0.081 12.4 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain NTP_transf_2 PF01909.18 gi|397781154|ref|YP_006545627.1| - 2.9e-17 62.7 0.0 3.4e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|397781155|ref|YP_006545628.1| - 1e-25 89.6 0.4 1.2e-25 89.4 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 IPPT PF01715.12 gi|397781155|ref|YP_006545628.1| - 0.09 11.7 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 IPP transferase NTP_transf_2 PF01909.18 gi|397781156|ref|YP_006545629.1| - 2.8e-09 37.1 0.0 3.1e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain HEPN PF05168.9 gi|397781157|ref|YP_006545630.1| - 1.8e-08 34.2 0.1 2.2e-08 33.9 0.0 1.0 1 0 0 1 1 1 1 HEPN domain CobA_CobO_BtuR PF02572.10 gi|397781159|ref|YP_006545632.1| - 2.3e-59 199.8 0.0 2.5e-59 199.7 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IstB_IS21 PF01695.12 gi|397781159|ref|YP_006545632.1| - 0.0013 18.1 0.1 0.55 9.6 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein KdpA PF03814.10 gi|397781160|ref|YP_006545633.1| - 1.8e-202 673.2 28.7 2.1e-202 673.0 19.9 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit DUF2818 PF10993.3 gi|397781160|ref|YP_006545633.1| - 0.19 12.2 0.0 0.19 12.2 0.0 3.4 5 0 0 5 5 5 0 Protein of unknown function (DUF2818) Hydrolase PF00702.21 gi|397781161|ref|YP_006545634.1| - 2.7e-34 119.4 1.6 5e-34 118.5 1.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|397781161|ref|YP_006545634.1| - 2.4e-31 108.5 0.4 2.4e-31 108.5 0.3 1.7 2 0 0 2 2 2 1 E1-E2 ATPase HAD PF12710.2 gi|397781161|ref|YP_006545634.1| - 5.7e-11 42.9 0.0 1.4e-10 41.6 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|397781161|ref|YP_006545634.1| - 0.00058 19.5 0.2 0.0011 18.6 0.2 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NOD PF06816.8 gi|397781161|ref|YP_006545634.1| - 0.011 14.8 0.1 0.025 13.6 0.0 1.6 1 0 0 1 1 1 0 NOTCH protein KdpC PF02669.10 gi|397781162|ref|YP_006545635.1| - 9.2e-54 181.9 0.1 1.1e-53 181.7 0.1 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain KdpD PF02702.12 gi|590000709|ref|YP_006545636.2| - 5.7e-76 254.3 0.0 8.6e-76 253.7 0.0 1.3 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain GAF_3 PF13492.1 gi|590000709|ref|YP_006545636.2| - 1.9e-09 37.7 0.0 5.1e-09 36.3 0.0 1.8 1 0 0 1 1 1 1 GAF domain DUF4118 PF13493.1 gi|590000709|ref|YP_006545636.2| - 7.2e-09 35.7 11.5 1.3e-08 34.9 8.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) Usp PF00582.21 gi|590000709|ref|YP_006545636.2| - 4.7e-07 30.0 0.1 1.6e-06 28.3 0.0 2.0 1 0 0 1 1 1 1 Universal stress protein family Rubredoxin PF00301.15 gi|397781164|ref|YP_006545637.1| - 3e-39 132.6 9.1 1.1e-19 70.0 1.3 2.1 2 0 0 2 2 2 2 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|397781164|ref|YP_006545637.1| - 5.9e-05 22.2 11.3 0.027 13.7 1.6 4.0 3 1 0 3 3 3 1 TFIIB zinc-binding DZR PF12773.2 gi|397781164|ref|YP_006545637.1| - 0.00011 21.9 1.2 0.086 12.6 0.2 3.3 2 1 1 3 3 3 1 Double zinc ribbon zf-HIT PF04438.11 gi|397781164|ref|YP_006545637.1| - 0.00013 21.5 9.1 1.3 8.7 0.0 4.1 4 0 0 4 4 4 1 HIT zinc finger OrfB_Zn_ribbon PF07282.6 gi|397781164|ref|YP_006545637.1| - 0.00076 19.0 0.5 0.48 10.1 0.0 3.0 3 0 0 3 3 3 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|397781164|ref|YP_006545637.1| - 0.00094 18.9 4.2 0.096 12.5 0.1 3.0 3 0 0 3 3 3 1 Transposase zinc-ribbon domain Elf1 PF05129.8 gi|397781164|ref|YP_006545637.1| - 0.0026 17.4 0.3 1.4 8.7 0.0 3.1 2 1 1 3 3 3 1 Transcription elongation factor Elf1 like IBR PF01485.16 gi|397781164|ref|YP_006545637.1| - 0.0044 16.8 0.3 2.2 8.2 0.0 2.2 2 0 0 2 2 2 1 IBR domain zf-C3HC4_3 PF13920.1 gi|397781164|ref|YP_006545637.1| - 0.0053 16.4 1.7 0.011 15.3 0.1 2.2 2 1 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) FdhE PF04216.7 gi|397781164|ref|YP_006545637.1| - 0.0071 16.0 1.6 0.075 12.7 0.2 2.2 2 0 0 2 2 2 1 Protein involved in formate dehydrogenase formation DUF3449 PF11931.3 gi|397781164|ref|YP_006545637.1| - 0.011 15.3 1.8 1.1 8.7 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF3449) zf-H2C2_2 PF13465.1 gi|397781164|ref|YP_006545637.1| - 0.014 15.6 8.1 6.8 7.1 0.1 4.0 4 0 0 4 4 4 0 Zinc-finger double domain Desulfoferrod_N PF06397.7 gi|397781164|ref|YP_006545637.1| - 0.017 14.4 14.2 0.044 13.1 0.2 4.1 4 0 0 4 4 4 0 Desulfoferrodoxin, N-terminal domain zf-Di19 PF05605.7 gi|397781164|ref|YP_006545637.1| - 0.022 14.8 2.7 3.9 7.6 0.0 2.8 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding DUF2296 PF10058.4 gi|397781164|ref|YP_006545637.1| - 0.03 14.0 6.9 7.5 6.3 0.0 4.0 4 0 0 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) Lar_restr_allev PF14354.1 gi|397781164|ref|YP_006545637.1| - 0.047 13.9 6.4 0.96 9.7 0.2 2.8 3 0 0 3 3 3 0 Restriction alleviation protein Lar DUF1610 PF07754.6 gi|397781164|ref|YP_006545637.1| - 0.082 13.0 16.6 0.37 10.9 0.1 4.1 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|397781164|ref|YP_006545637.1| - 0.11 12.4 8.9 18 5.4 0.1 4.1 4 0 0 4 4 4 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|397781164|ref|YP_006545637.1| - 0.16 11.4 7.3 17 5.0 0.1 3.9 4 0 0 4 4 4 0 A2L zinc ribbon domain zf-RING_5 PF14634.1 gi|397781164|ref|YP_006545637.1| - 0.18 11.5 4.6 22 4.9 0.0 3.5 3 1 0 3 3 3 0 zinc-RING finger domain zf-C2H2_6 PF13912.1 gi|397781164|ref|YP_006545637.1| - 0.19 11.7 6.1 17 5.4 0.1 3.5 3 0 0 3 3 3 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.1 gi|397781164|ref|YP_006545637.1| - 0.24 10.9 0.2 0.24 10.9 0.1 3.9 4 0 0 4 4 4 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|397781164|ref|YP_006545637.1| - 0.25 11.1 8.8 0.46 10.2 1.1 3.1 3 1 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C2H2_3 PF13878.1 gi|397781164|ref|YP_006545637.1| - 0.29 10.7 6.3 10 5.8 0.1 3.7 4 0 0 4 4 4 0 zinc-finger of acetyl-transferase ESCO RRN7 PF11781.3 gi|397781164|ref|YP_006545637.1| - 0.31 10.5 11.7 8.5 5.9 2.8 3.8 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Nudix_N_2 PF14803.1 gi|397781164|ref|YP_006545637.1| - 0.36 10.5 13.4 0.74 9.5 1.5 4.1 4 1 0 4 4 3 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|397781164|ref|YP_006545637.1| - 0.41 9.9 12.5 1.9 7.8 0.2 4.2 4 0 0 4 4 4 0 zinc-ribbon domain C1_1 PF00130.17 gi|397781164|ref|YP_006545637.1| - 0.47 10.2 3.2 5.5 6.8 0.0 2.9 3 1 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-nanos PF05741.8 gi|397781164|ref|YP_006545637.1| - 0.66 9.9 7.2 11 6.0 0.0 3.5 4 0 0 4 4 4 0 Nanos RNA binding domain zf-C2H2_4 PF13894.1 gi|397781164|ref|YP_006545637.1| - 0.94 9.9 9.1 14 6.2 0.0 3.5 4 0 0 4 4 3 0 C2H2-type zinc finger Cys_rich_CPCC PF14206.1 gi|397781164|ref|YP_006545637.1| - 1.9 8.0 12.0 23 4.6 0.1 3.9 4 0 0 4 4 4 0 Cysteine-rich CPCC DNA_ligase_ZBD PF03119.11 gi|397781164|ref|YP_006545637.1| - 3.2 7.5 9.5 3.7 7.3 0.9 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain GATA PF00320.22 gi|397781164|ref|YP_006545637.1| - 3.4 7.1 6.9 2 7.8 0.3 2.6 3 0 0 3 3 2 0 GATA zinc finger Ribosomal_S27 PF01599.14 gi|397781164|ref|YP_006545637.1| - 4.8 7.0 10.2 1.8 8.4 0.6 2.6 3 0 0 3 3 2 0 Ribosomal protein S27a zf-C2H2 PF00096.21 gi|397781164|ref|YP_006545637.1| - 5.4 7.5 14.1 14 6.3 0.2 3.7 4 0 0 4 4 4 0 Zinc finger, C2H2 type Flavodoxin_5 PF12724.2 gi|397781165|ref|YP_006545638.1| - 1.4e-32 112.6 0.0 2e-32 112.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|397781165|ref|YP_006545638.1| - 1.6e-05 24.3 0.0 2.3e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|397781165|ref|YP_006545638.1| - 6.2e-05 23.0 0.0 0.0001 22.2 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|397781165|ref|YP_006545638.1| - 0.0025 17.3 0.2 1.8 8.0 0.0 2.3 1 1 1 2 2 2 2 NADPH-dependent FMN reductase SBP_bac_5 PF00496.17 gi|397781165|ref|YP_006545638.1| - 0.0092 14.8 0.0 0.012 14.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Flavodoxin_4 PF12682.2 gi|397781165|ref|YP_006545638.1| - 0.01 15.2 0.0 0.2 10.9 0.1 2.6 2 1 0 2 2 2 0 Flavodoxin DsbC_N PF10411.4 gi|397781165|ref|YP_006545638.1| - 0.077 12.2 0.0 0.42 9.9 0.0 2.0 2 0 0 2 2 2 0 Disulfide bond isomerase protein N-terminus DsbD PF02683.10 gi|397781166|ref|YP_006545639.1| - 5.2e-15 55.6 17.4 5.2e-15 55.6 12.1 1.4 2 0 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region DUF2910 PF11139.3 gi|397781166|ref|YP_006545639.1| - 1.9e-09 36.9 20.0 1.9e-09 36.9 13.9 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF2910) Gate PF07670.9 gi|397781166|ref|YP_006545639.1| - 0.018 14.9 3.3 0.018 14.9 2.3 2.9 3 2 0 3 3 3 0 Nucleoside recognition Thioredoxin_3 PF13192.1 gi|397781166|ref|YP_006545639.1| - 0.057 13.2 0.0 0.12 12.1 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin domain Thioredoxin_4 PF13462.1 gi|397781166|ref|YP_006545639.1| - 0.14 12.2 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin Thioredoxin PF00085.15 gi|397781166|ref|YP_006545639.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin ATP_bind_4 PF01902.12 gi|397781169|ref|YP_006545642.1| - 6.5e-69 231.6 0.0 7.3e-69 231.4 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|397781169|ref|YP_006545642.1| - 0.059 12.8 0.0 0.096 12.1 0.0 1.5 1 1 0 1 1 1 0 Asparagine synthase GATase PF00117.23 gi|397781170|ref|YP_006545643.1| - 2.8e-12 46.5 0.0 3.3e-12 46.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|397781170|ref|YP_006545643.1| - 0.053 12.9 0.0 6.6 6.1 0.0 2.3 2 0 0 2 2 2 0 Peptidase C26 HATPase_c PF02518.21 gi|397781172|ref|YP_006545645.1| - 6.4e-24 83.8 0.0 1.6e-23 82.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|397781172|ref|YP_006545645.1| - 7.6e-20 71.9 0.5 2.9e-19 70.0 0.1 2.2 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|397781172|ref|YP_006545645.1| - 1.4e-15 57.5 0.0 5.7e-15 55.5 0.0 2.1 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|397781172|ref|YP_006545645.1| - 1.3e-10 41.5 0.0 3e-10 40.4 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|397781172|ref|YP_006545645.1| - 8.2e-10 38.9 0.0 4.9e-09 36.5 0.0 2.3 2 0 0 2 2 2 1 PAS domain Response_reg PF00072.19 gi|397781172|ref|YP_006545645.1| - 1.2e-07 31.7 0.0 1.6e-06 28.1 0.0 2.7 2 1 0 2 2 2 1 Response regulator receiver domain PAS PF00989.19 gi|397781172|ref|YP_006545645.1| - 2.6e-07 30.4 0.0 6.4e-07 29.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|397781172|ref|YP_006545645.1| - 8.1e-07 29.0 0.0 3.4e-06 27.0 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|397781172|ref|YP_006545645.1| - 9.4e-06 25.6 0.1 0.00056 19.9 0.0 2.7 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|397781172|ref|YP_006545645.1| - 1.6e-05 24.7 0.0 6.3e-05 22.7 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|397781172|ref|YP_006545645.1| - 4.3e-05 23.1 0.0 8.6e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.1 gi|397781172|ref|YP_006545645.1| - 0.00017 21.2 0.0 0.00066 19.4 0.0 2.0 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|397781172|ref|YP_006545645.1| - 0.0035 17.2 0.1 0.017 15.0 0.1 2.2 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Methyltransf_26 PF13659.1 gi|397781172|ref|YP_006545645.1| - 0.0037 17.2 0.1 0.25 11.4 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|397781172|ref|YP_006545645.1| - 0.071 13.9 0.0 0.39 11.5 0.0 2.2 1 0 0 1 1 1 0 Methyltransferase domain DUF512 PF04459.7 gi|397781173|ref|YP_006545646.1| - 7.7e-26 90.4 0.0 1.1e-25 89.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|397781173|ref|YP_006545646.1| - 6.6e-17 62.1 5.4 1.4e-15 57.8 3.5 2.6 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|397781173|ref|YP_006545646.1| - 0.012 15.7 1.2 0.042 13.9 0.8 1.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|397781173|ref|YP_006545646.1| - 0.21 11.6 3.1 1.6 8.7 2.4 2.3 2 1 0 2 2 2 0 4Fe-4S single cluster domain DUF504 PF04457.7 gi|397781174|ref|YP_006545647.1| - 8e-14 51.5 0.0 1.1e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF504) OrfB_Zn_ribbon PF07282.6 gi|397781175|ref|YP_006545648.1| - 6.2e-21 73.8 0.2 1.3e-20 72.7 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|397781175|ref|YP_006545648.1| - 1.2e-12 47.6 0.5 5.3e-12 45.6 0.4 1.8 1 1 0 1 1 1 1 Probable transposase PIN PF01850.16 gi|397781175|ref|YP_006545648.1| - 0.15 12.3 0.0 0.31 11.3 0.0 1.5 1 0 0 1 1 1 0 PIN domain N6_N4_Mtase PF01555.13 gi|397781178|ref|YP_006545651.1| - 1.8e-45 155.2 0.0 2.2e-45 154.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|397781178|ref|YP_006545651.1| - 6.5e-13 48.7 0.1 2.6e-05 24.2 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|397781178|ref|YP_006545651.1| - 0.00021 20.9 0.1 0.19 11.2 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 DUF1616 PF07760.6 gi|397781180|ref|YP_006545653.1| - 7.7e-49 166.3 0.0 9.3e-49 166.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) YTV PF07639.6 gi|397781180|ref|YP_006545653.1| - 0.083 12.6 0.2 2.5 7.9 0.0 2.2 2 0 0 2 2 2 0 YTV Arch_flagellin PF01917.11 gi|397781181|ref|YP_006545654.1| - 1.3e-11 44.4 6.1 3.5e-10 39.8 4.2 2.0 1 1 0 1 1 1 1 Archaebacterial flagellin Spore_SspJ PF09575.5 gi|397781181|ref|YP_006545654.1| - 0.074 13.2 0.2 0.13 12.5 0.1 1.4 1 0 0 1 1 1 0 Small spore protein J (Spore_SspJ) Arch_flagellin PF01917.11 gi|397781182|ref|YP_006545655.1| - 1.4e-19 70.4 0.2 1.9e-19 70.0 0.1 1.2 1 1 0 1 1 1 1 Archaebacterial flagellin Rab5ip PF07019.7 gi|397781182|ref|YP_006545655.1| - 0.011 15.8 0.7 0.019 15.0 0.5 1.4 1 0 0 1 1 1 0 Rab5-interacting protein (Rab5ip) DUF457 PF04307.9 gi|397781183|ref|YP_006545656.1| - 2.5e-17 62.6 15.6 3.3e-17 62.2 9.9 1.8 1 1 1 2 2 2 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF347 PF03988.7 gi|397781183|ref|YP_006545656.1| - 0.0047 16.7 0.1 0.0047 16.7 0.1 3.3 3 1 2 5 5 5 1 Repeat of Unknown Function (DUF347) Zn_dep_PLPC PF00882.13 gi|397781183|ref|YP_006545656.1| - 0.014 15.0 0.0 0.043 13.4 0.0 1.5 1 1 0 1 1 1 0 Zinc dependent phospholipase C Acyl_transf_3 PF01757.17 gi|397781183|ref|YP_006545656.1| - 0.052 12.3 7.0 0.072 11.9 4.9 1.3 1 0 0 1 1 1 0 Acyltransferase family Transglut_core PF01841.14 gi|397781185|ref|YP_006545658.1| - 1.1e-11 44.8 0.0 2.2e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Fer4_20 PF14691.1 gi|397781187|ref|YP_006545660.1| - 1.3e-44 150.3 2.6 2e-44 149.7 1.8 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|397781187|ref|YP_006545660.1| - 5.6e-24 85.1 5.9 7e-10 39.1 0.3 4.5 3 2 1 4 4 4 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|397781187|ref|YP_006545660.1| - 4.1e-14 52.7 3.9 2.2e-08 34.4 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|397781187|ref|YP_006545660.1| - 8.2e-13 48.8 0.1 2.1e-06 27.9 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|397781187|ref|YP_006545660.1| - 3.5e-09 36.5 1.8 1.6e-08 34.4 0.2 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|397781187|ref|YP_006545660.1| - 1.2e-08 34.7 2.8 0.00023 20.7 0.1 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|397781187|ref|YP_006545660.1| - 2.2e-08 33.3 1.5 0.00042 19.2 0.2 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|397781187|ref|YP_006545660.1| - 5.6e-08 32.9 0.2 0.0094 16.1 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|397781187|ref|YP_006545660.1| - 8.6e-08 31.6 7.9 3.3e-05 23.1 0.7 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|397781187|ref|YP_006545660.1| - 2.3e-07 30.0 7.1 1.4e-06 27.4 0.5 3.0 3 0 0 3 3 3 1 FAD binding domain Thi4 PF01946.12 gi|397781187|ref|YP_006545660.1| - 2.6e-07 29.9 0.3 4.7e-06 25.8 0.0 2.2 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.14 gi|397781187|ref|YP_006545660.1| - 7.2e-07 28.5 2.5 8.3e-05 21.8 0.2 2.1 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|397781187|ref|YP_006545660.1| - 6.9e-06 24.7 4.9 5.1e-05 21.9 0.5 2.1 2 0 0 2 2 2 1 HI0933-like protein 2-Hacid_dh_C PF02826.14 gi|397781187|ref|YP_006545660.1| - 8.8e-06 24.9 0.1 0.0024 17.0 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.19 gi|397781187|ref|YP_006545660.1| - 1.4e-05 24.2 5.4 0.00015 20.8 1.0 2.7 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|397781187|ref|YP_006545660.1| - 2.1e-05 24.3 0.5 0.2 11.4 0.3 2.4 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CPSase_L_chain PF00289.17 gi|397781187|ref|YP_006545660.1| - 9.8e-05 22.4 0.4 0.012 15.7 0.0 2.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain 3HCDH_N PF02737.13 gi|397781187|ref|YP_006545660.1| - 0.00011 21.9 2.1 0.078 12.6 0.2 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|397781187|ref|YP_006545660.1| - 0.00036 20.2 0.1 0.12 11.8 0.0 2.2 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|397781187|ref|YP_006545660.1| - 0.00084 18.7 0.2 0.01 15.2 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FMO-like PF00743.14 gi|397781187|ref|YP_006545660.1| - 0.0011 17.2 0.0 0.21 9.7 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like Amino_oxidase PF01593.19 gi|397781187|ref|YP_006545660.1| - 0.0014 17.8 1.1 0.0014 17.8 0.8 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase XdhC_C PF13478.1 gi|397781187|ref|YP_006545660.1| - 0.0025 18.1 0.5 0.094 13.0 0.0 2.9 3 0 0 3 3 3 1 XdhC Rossmann domain NAD_binding_9 PF13454.1 gi|397781187|ref|YP_006545660.1| - 0.0027 17.4 1.2 0.048 13.4 0.3 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Shikimate_DH PF01488.15 gi|397781187|ref|YP_006545660.1| - 0.0033 17.5 0.2 0.58 10.2 0.0 2.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|397781187|ref|YP_006545660.1| - 0.0061 16.9 1.2 5.5 7.5 0.0 2.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent YjeF_N PF03853.10 gi|397781187|ref|YP_006545660.1| - 0.026 14.1 0.1 7.1 6.1 0.0 2.4 2 0 0 2 2 2 0 YjeF-related protein N-terminus Oxidored_nitro PF00148.14 gi|397781187|ref|YP_006545660.1| - 0.026 13.1 0.1 0.11 11.0 0.0 1.9 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase Glyco_transf_4 PF13439.1 gi|397781187|ref|YP_006545660.1| - 0.03 14.0 0.3 7.1 6.3 0.0 2.2 2 0 0 2 2 2 0 Glycosyltransferase Family 4 IlvN PF07991.7 gi|397781187|ref|YP_006545660.1| - 0.032 13.5 0.1 5.3 6.3 0.0 2.3 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|397781187|ref|YP_006545660.1| - 0.036 14.0 0.4 9.1 6.3 0.0 2.8 3 0 0 3 3 2 0 TrkA-N domain ApbA PF02558.11 gi|397781187|ref|YP_006545660.1| - 0.043 13.2 0.5 0.15 11.4 0.1 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.9 gi|397781187|ref|YP_006545660.1| - 0.044 12.4 2.2 0.073 11.6 0.5 1.8 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_10 PF13460.1 gi|397781187|ref|YP_006545660.1| - 0.047 13.6 5.0 2.5 8.0 0.5 3.1 3 0 0 3 3 3 0 NADH(P)-binding Rossmann-like PF10727.4 gi|397781187|ref|YP_006545660.1| - 0.052 13.2 0.4 0.17 11.5 0.1 2.0 3 0 0 3 3 1 0 Rossmann-like domain DJ-1_PfpI PF01965.19 gi|397781187|ref|YP_006545660.1| - 0.083 12.3 0.4 2.4 7.6 0.0 2.8 2 1 1 3 3 3 0 DJ-1/PfpI family K_oxygenase PF13434.1 gi|397781187|ref|YP_006545660.1| - 0.093 11.6 0.1 12 4.7 0.0 2.6 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|397781187|ref|YP_006545660.1| - 0.13 11.1 1.2 0.74 8.6 0.3 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein AdoHcyase_NAD PF00670.16 gi|397781187|ref|YP_006545660.1| - 0.22 11.3 3.4 5.7 6.7 0.0 3.0 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DHODB_Fe-S_bind PF10418.4 gi|397781188|ref|YP_006545661.1| - 1.3e-12 47.0 2.6 1.3e-12 47.0 1.8 2.0 3 0 0 3 3 3 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|397781188|ref|YP_006545661.1| - 3.3e-10 40.4 0.0 5.3e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2_3 PF13085.1 gi|397781188|ref|YP_006545661.1| - 0.046 13.5 0.2 0.087 12.6 0.2 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FAD_binding_6 PF00970.19 gi|397781188|ref|YP_006545661.1| - 0.071 13.2 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase FAD-binding domain DUF2244 PF10003.4 gi|397781189|ref|YP_006545662.1| - 0.006 15.9 0.8 0.0061 15.9 0.6 1.0 1 0 0 1 1 1 1 Integral membrane protein (DUF2244) DUF2854 PF11016.3 gi|397781189|ref|YP_006545662.1| - 0.0095 15.4 0.1 0.0095 15.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2854) DUF3188 PF11384.3 gi|397781189|ref|YP_006545662.1| - 0.099 12.2 3.7 0.56 9.8 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) DUF3185 PF11381.3 gi|397781189|ref|YP_006545662.1| - 0.37 10.5 9.7 0.56 10.0 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF973 PF06157.6 gi|397781189|ref|YP_006545662.1| - 0.96 8.3 4.9 1.1 8.1 3.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) PGPGW PF09656.5 gi|397781189|ref|YP_006545662.1| - 4.7 6.5 11.0 7.1 6.0 7.6 1.3 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) SKG6 PF08693.5 gi|397781189|ref|YP_006545662.1| - 5.7 6.3 10.3 0.28 10.5 0.9 2.1 2 0 0 2 2 2 0 Transmembrane alpha-helix domain UbiA PF01040.13 gi|397781189|ref|YP_006545662.1| - 10 5.2 8.3 11 5.0 5.7 1.0 1 0 0 1 1 1 0 UbiA prenyltransferase family YbjQ_1 PF01906.12 gi|397781190|ref|YP_006545663.1| - 1.2e-38 131.7 2.3 1.3e-38 131.5 1.6 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.1 gi|397781190|ref|YP_006545663.1| - 0.003 17.4 0.3 0.0049 16.7 0.2 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4156) SeleniumBinding PF11524.3 gi|397781190|ref|YP_006545663.1| - 0.0047 17.0 0.8 0.98 9.6 0.1 2.2 1 1 0 2 2 2 2 Selenium binding protein DUF456 PF04306.8 gi|397781190|ref|YP_006545663.1| - 0.16 11.9 0.1 0.16 11.9 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF456) PUA PF01472.15 gi|397781192|ref|YP_006545665.1| - 3.4e-13 49.0 0.3 1.8e-11 43.5 0.1 2.3 2 0 0 2 2 2 1 PUA domain TGT PF01702.13 gi|397781192|ref|YP_006545665.1| - 0.00027 20.3 0.2 0.0044 16.3 0.1 2.1 1 1 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT PF01702.13 gi|397781193|ref|YP_006545666.1| - 4.4e-49 166.9 0.0 5.6e-49 166.5 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase AMMECR1 PF01871.12 gi|397781194|ref|YP_006545667.1| - 1.5e-59 199.9 0.0 1.7e-59 199.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 CBS PF00571.23 gi|397781196|ref|YP_006545669.1| - 1.7e-23 82.1 0.5 8.6e-12 44.6 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.17 gi|397781196|ref|YP_006545669.1| - 5.8e-13 48.4 0.2 1.1e-12 47.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|397781196|ref|YP_006545669.1| - 5.2e-12 45.7 1.0 8.9e-12 45.0 0.7 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|397781196|ref|YP_006545669.1| - 1e-09 38.2 0.0 1.8e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|397781196|ref|YP_006545669.1| - 1.9e-05 24.7 0.0 4e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|397781196|ref|YP_006545669.1| - 0.00014 21.3 0.1 0.00033 20.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|397781196|ref|YP_006545669.1| - 0.0026 17.5 0.1 0.0073 16.0 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain LacI PF00356.16 gi|397781196|ref|YP_006545669.1| - 0.022 14.3 2.2 1 9.0 1.1 3.1 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family HTH_Crp_2 PF13545.1 gi|397781196|ref|YP_006545669.1| - 0.069 12.9 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Pou PF00157.12 gi|397781196|ref|YP_006545669.1| - 0.1 12.2 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Pou domain - N-terminal to homeobox domain TIM PF00121.13 gi|397781197|ref|YP_006545670.1| - 2.8e-28 98.6 0.1 2e-26 92.5 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|397781197|ref|YP_006545670.1| - 0.00047 19.3 0.3 0.00077 18.6 0.2 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|397781197|ref|YP_006545670.1| - 0.012 14.6 0.0 0.021 13.8 0.0 1.4 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase B5 PF03484.10 gi|397781198|ref|YP_006545671.1| - 0.097 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetase B5 domain AAA PF00004.24 gi|397781199|ref|YP_006545672.1| - 1.5e-44 151.4 0.2 5.6e-44 149.5 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|397781199|ref|YP_006545672.1| - 1.6e-08 34.7 0.2 2.6e-07 30.7 0.2 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|397781199|ref|YP_006545672.1| - 6.2e-08 32.4 0.3 2.3e-07 30.6 0.0 2.1 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|397781199|ref|YP_006545672.1| - 7e-07 29.3 0.0 1.5e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|397781199|ref|YP_006545672.1| - 3.8e-06 27.0 1.3 0.00047 20.2 0.1 3.0 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|397781199|ref|YP_006545672.1| - 1.8e-05 23.8 0.0 4.5e-05 22.6 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|397781199|ref|YP_006545672.1| - 3.6e-05 23.4 0.2 8.5e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|397781199|ref|YP_006545672.1| - 4.6e-05 24.2 0.1 0.00028 21.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|397781199|ref|YP_006545672.1| - 0.0003 19.8 0.0 0.00049 19.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|397781199|ref|YP_006545672.1| - 0.0005 19.9 0.0 0.0014 18.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|397781199|ref|YP_006545672.1| - 0.00056 18.7 0.0 0.00094 18.0 0.0 1.3 1 0 0 1 1 1 1 TIP49 C-terminus AAA_33 PF13671.1 gi|397781199|ref|YP_006545672.1| - 0.00075 19.3 0.1 0.0022 17.8 0.1 2.0 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|397781199|ref|YP_006545672.1| - 0.0009 18.7 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_28 PF13521.1 gi|397781199|ref|YP_006545672.1| - 0.0011 19.0 0.7 0.002 18.0 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|397781199|ref|YP_006545672.1| - 0.0012 18.2 2.7 0.2 11.0 0.1 2.8 2 1 1 3 3 3 2 AAA domain AAA_18 PF13238.1 gi|397781199|ref|YP_006545672.1| - 0.0012 19.1 0.2 0.0056 16.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|397781199|ref|YP_006545672.1| - 0.0022 17.1 0.9 0.32 10.0 0.0 3.2 3 0 0 3 3 3 1 KaiC AAA_11 PF13086.1 gi|397781199|ref|YP_006545672.1| - 0.0024 17.5 0.1 0.12 11.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|397781199|ref|YP_006545672.1| - 0.0037 16.8 0.0 0.0075 15.8 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|397781199|ref|YP_006545672.1| - 0.0057 16.1 0.2 0.1 12.0 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.7 gi|397781199|ref|YP_006545672.1| - 0.0069 16.0 0.1 0.2 11.3 0.0 2.3 1 1 1 2 2 2 1 NACHT domain Sigma54_activ_2 PF14532.1 gi|397781199|ref|YP_006545672.1| - 0.0077 16.2 0.1 0.039 14.0 0.0 2.2 2 1 0 2 2 1 1 Sigma-54 interaction domain Tektin PF03148.9 gi|397781199|ref|YP_006545672.1| - 0.0099 14.4 3.9 0.022 13.3 2.7 1.5 1 0 0 1 1 1 1 Tektin family IncA PF04156.9 gi|397781199|ref|YP_006545672.1| - 0.012 15.2 3.0 0.024 14.2 2.1 1.4 1 0 0 1 1 1 0 IncA protein ResIII PF04851.10 gi|397781199|ref|YP_006545672.1| - 0.013 15.3 0.5 0.24 11.2 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|397781199|ref|YP_006545672.1| - 0.013 15.0 0.5 0.046 13.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|397781199|ref|YP_006545672.1| - 0.014 14.4 0.2 0.033 13.2 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin Mg_chelatase PF01078.16 gi|397781199|ref|YP_006545672.1| - 0.016 14.3 0.1 0.034 13.3 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|397781199|ref|YP_006545672.1| - 0.028 13.6 0.1 0.069 12.3 0.0 1.6 2 0 0 2 2 1 0 PhoH-like protein NTPase_1 PF03266.10 gi|397781199|ref|YP_006545672.1| - 0.029 14.0 0.2 0.2 11.3 0.0 2.5 2 1 0 2 2 2 0 NTPase RNA_helicase PF00910.17 gi|397781199|ref|YP_006545672.1| - 0.031 14.4 0.0 0.057 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|397781199|ref|YP_006545672.1| - 0.037 12.8 0.0 0.063 12.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Torsin PF06309.6 gi|397781199|ref|YP_006545672.1| - 0.048 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Torsin DUF2075 PF09848.4 gi|397781199|ref|YP_006545672.1| - 0.099 11.6 0.3 0.3 10.0 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) IL2 PF00715.12 gi|397781199|ref|YP_006545672.1| - 0.14 11.9 0.1 0.5 10.0 0.0 1.8 2 0 0 2 2 2 0 Interleukin 2 Phage_lysis PF03245.8 gi|397781199|ref|YP_006545672.1| - 0.16 11.9 1.8 0.37 10.7 1.3 1.5 1 0 0 1 1 1 0 Bacteriophage Rz lysis protein CCDC155 PF14662.1 gi|397781199|ref|YP_006545672.1| - 0.26 10.8 5.5 0.11 12.0 1.5 2.0 3 0 0 3 3 2 0 Coiled-coil region of CCDC155 APG6 PF04111.7 gi|397781199|ref|YP_006545672.1| - 0.64 9.0 4.1 1.2 8.1 2.9 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 Tup_N PF08581.5 gi|397781199|ref|YP_006545672.1| - 1.6 8.9 10.4 0.4 10.9 3.2 2.8 4 0 0 4 4 2 0 Tup N-terminal TMF_DNA_bd PF12329.3 gi|397781199|ref|YP_006545672.1| - 4.3 7.2 7.7 1.4 8.7 3.0 1.9 2 0 0 2 2 1 0 TATA element modulatory factor 1 DNA binding bZIP_2 PF07716.10 gi|397781199|ref|YP_006545672.1| - 6.5 6.6 12.4 2.9 7.8 2.7 2.6 1 1 1 2 2 2 0 Basic region leucine zipper AAA_23 PF13476.1 gi|397781199|ref|YP_006545672.1| - 7.8 6.7 8.2 52 4.0 0.0 2.5 3 0 0 3 3 2 0 AAA domain HTH_19 PF12844.2 gi|397781200|ref|YP_006545673.1| - 0.00057 19.8 1.5 0.00087 19.2 0.3 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|397781200|ref|YP_006545673.1| - 0.0039 17.3 0.0 0.0085 16.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|397781200|ref|YP_006545673.1| - 0.0076 15.8 1.3 0.014 15.0 0.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|397781200|ref|YP_006545673.1| - 0.011 15.5 0.4 0.011 15.5 0.3 1.8 2 0 0 2 2 2 0 Helix-turn-helix DeoC PF01791.4 gi|397781201|ref|YP_006545674.1| - 1.2e-47 162.2 0.0 1.3e-47 162.0 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PucR PF07905.6 gi|397781201|ref|YP_006545674.1| - 0.012 15.1 0.0 0.081 12.4 0.0 2.1 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family AP_endonuc_2 PF01261.19 gi|397781201|ref|YP_006545674.1| - 0.032 13.5 0.3 0.2 10.9 0.2 2.1 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel PEP_mutase PF13714.1 gi|397781201|ref|YP_006545674.1| - 0.04 13.1 0.3 0.83 8.8 0.0 2.2 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase DeoC PF01791.4 gi|397781202|ref|YP_006545675.1| - 1.6e-50 171.6 0.0 1.9e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PEP_mutase PF13714.1 gi|397781202|ref|YP_006545675.1| - 0.00032 19.9 1.4 0.041 13.1 0.1 2.9 1 1 3 4 4 4 1 Phosphoenolpyruvate phosphomutase His_biosynth PF00977.16 gi|397781202|ref|YP_006545675.1| - 0.018 14.2 0.1 0.17 11.1 0.0 2.1 2 0 0 2 2 2 0 Histidine biosynthesis protein Dus PF01207.12 gi|397781202|ref|YP_006545675.1| - 0.028 13.2 1.9 11 4.7 0.0 3.1 3 0 0 3 3 3 0 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|397781202|ref|YP_006545675.1| - 0.057 12.5 0.0 5.6 6.0 0.1 2.3 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI DHQS PF01959.11 gi|397781203|ref|YP_006545676.1| - 4.4e-129 430.1 2.5 5.3e-129 429.9 1.7 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Hint PF01079.15 gi|397781203|ref|YP_006545676.1| - 0.0099 15.0 0.1 1.9 7.6 0.0 2.5 2 0 0 2 2 2 2 Hint module UPF0086 PF01868.11 gi|397781203|ref|YP_006545676.1| - 0.11 12.1 0.1 1.6 8.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function UPF0086 PDH PF02153.12 gi|397781204|ref|YP_006545677.1| - 5.9e-36 123.6 0.0 7.5e-36 123.3 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|397781204|ref|YP_006545677.1| - 3.5e-05 24.1 3.4 0.084 13.3 0.1 2.7 1 1 1 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|397781204|ref|YP_006545677.1| - 0.0028 17.4 1.7 0.16 11.8 1.1 2.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|397781204|ref|YP_006545677.1| - 0.0032 17.1 0.7 0.88 9.1 0.4 2.4 1 1 1 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain B12-binding PF02310.14 gi|397781204|ref|YP_006545677.1| - 0.021 14.6 0.2 0.5 10.2 0.0 2.6 2 1 0 2 2 2 0 B12 binding domain NAD_Gly3P_dh_N PF01210.18 gi|397781204|ref|YP_006545677.1| - 0.22 11.2 1.0 0.68 9.6 0.0 2.0 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDT PF00800.13 gi|397781205|ref|YP_006545678.1| - 3.3e-41 140.8 0.0 3.9e-41 140.5 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|397781205|ref|YP_006545678.1| - 1.1e-12 47.0 0.0 8.3e-12 44.3 0.0 2.2 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|397781205|ref|YP_006545678.1| - 0.022 15.0 0.0 0.046 14.0 0.0 1.5 1 0 0 1 1 1 0 ACT domain ACT_5 PF13710.1 gi|397781205|ref|YP_006545678.1| - 0.046 13.5 0.3 0.11 12.2 0.1 1.8 2 0 0 2 2 2 0 ACT domain EPSP_synthase PF00275.15 gi|397781206|ref|YP_006545679.1| - 1.1e-110 369.9 0.0 1.2e-110 369.7 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DUF732 PF05305.9 gi|397781206|ref|YP_006545679.1| - 0.83 9.7 6.5 0.73 9.9 0.0 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF732) SKI PF01202.17 gi|397781207|ref|YP_006545680.1| - 1.5e-40 138.6 0.0 3.7e-40 137.3 0.0 1.6 1 0 0 1 1 1 1 Shikimate kinase Shikimate_dh_N PF08501.6 gi|397781207|ref|YP_006545680.1| - 1.8e-24 85.5 0.0 3.2e-24 84.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|397781207|ref|YP_006545680.1| - 2.6e-08 34.0 0.0 4.7e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AAA_17 PF13207.1 gi|397781207|ref|YP_006545680.1| - 5.9e-08 33.5 0.0 5e-07 30.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|397781207|ref|YP_006545680.1| - 0.00014 22.1 0.0 0.00057 20.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|397781207|ref|YP_006545680.1| - 0.00046 20.1 0.0 0.0013 18.6 0.0 1.8 2 0 0 2 2 2 1 Cytidylate kinase-like family AAA_33 PF13671.1 gi|397781207|ref|YP_006545680.1| - 0.00068 19.5 0.0 0.0019 18.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|397781207|ref|YP_006545680.1| - 0.0058 16.8 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|397781207|ref|YP_006545680.1| - 0.011 15.4 1.4 3.2 7.5 0.3 2.9 2 0 0 2 2 2 0 Part of AAA domain 2-Hacid_dh_C PF02826.14 gi|397781207|ref|YP_006545680.1| - 0.018 14.2 0.0 0.052 12.7 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|397781207|ref|YP_006545680.1| - 0.018 15.0 0.1 0.037 14.0 0.1 1.6 1 0 0 1 1 1 0 NADH(P)-binding AAA_28 PF13521.1 gi|397781207|ref|YP_006545680.1| - 0.061 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|397781207|ref|YP_006545680.1| - 0.16 11.8 0.0 0.54 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Chorismate_synt PF01264.16 gi|397781208|ref|YP_006545681.1| - 9.4e-132 438.6 6.4 1.5e-66 224.2 0.0 2.0 1 1 1 2 2 2 2 Chorismate synthase DHquinase_I PF01487.10 gi|397781210|ref|YP_006545683.1| - 6e-42 143.8 0.0 7e-42 143.5 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase P5CR_dimer PF14748.1 gi|397781211|ref|YP_006545684.1| - 5.9e-16 58.4 0.8 1.1e-15 57.5 0.6 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|397781211|ref|YP_006545684.1| - 9.8e-15 54.7 0.1 1.9e-14 53.8 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|397781211|ref|YP_006545684.1| - 3.7e-06 26.8 0.2 7.3e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase CPSase_L_chain PF00289.17 gi|397781211|ref|YP_006545684.1| - 0.0066 16.5 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain ApbA PF02558.11 gi|397781211|ref|YP_006545684.1| - 0.018 14.5 1.0 0.094 12.1 0.7 2.3 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|397781211|ref|YP_006545684.1| - 0.022 15.2 0.0 0.037 14.5 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|397781211|ref|YP_006545684.1| - 0.13 12.2 0.5 5.1 7.1 0.0 2.6 1 1 2 3 3 3 0 TrkA-N domain PDH PF02153.12 gi|397781211|ref|YP_006545684.1| - 0.15 10.9 0.1 0.21 10.4 0.1 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase YcfA PF07927.7 gi|397781212|ref|YP_006545685.1| - 1.6e-16 59.9 0.8 1.9e-16 59.7 0.5 1.1 1 0 0 1 1 1 1 YcfA-like protein UPF0150 PF03681.10 gi|397781213|ref|YP_006545686.1| - 1.9e-19 69.0 0.2 2.3e-19 68.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|397781213|ref|YP_006545686.1| - 0.02 14.9 0.0 0.025 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) Peptidase_U32 PF01136.14 gi|397781214|ref|YP_006545687.1| - 3.8e-101 336.8 0.0 8.2e-78 260.5 0.0 2.9 2 1 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|397781214|ref|YP_006545687.1| - 3.5e-22 78.7 0.0 7.9e-22 77.6 0.0 1.6 1 0 0 1 1 1 1 Collagenase AAA PF00004.24 gi|397781216|ref|YP_006545689.1| - 7e-45 152.4 0.1 5.4e-44 149.5 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|397781216|ref|YP_006545689.1| - 1.9e-08 34.3 0.0 5.9e-08 32.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|397781216|ref|YP_006545689.1| - 6.3e-06 26.2 0.0 6e-05 23.1 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|397781216|ref|YP_006545689.1| - 9.1e-06 25.4 0.2 6.5e-05 22.6 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|397781216|ref|YP_006545689.1| - 1.4e-05 25.2 0.1 0.0004 20.5 0.1 2.7 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|397781216|ref|YP_006545689.1| - 2.2e-05 23.6 0.1 7.6e-05 21.8 0.0 1.9 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|397781216|ref|YP_006545689.1| - 0.0004 20.0 0.0 0.0011 18.6 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|397781216|ref|YP_006545689.1| - 0.0005 19.5 0.0 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|397781216|ref|YP_006545689.1| - 0.00082 18.1 0.1 0.0021 16.8 0.0 1.6 2 0 0 2 2 2 1 TIP49 C-terminus AAA_17 PF13207.1 gi|397781216|ref|YP_006545689.1| - 0.00089 20.0 0.0 0.0031 18.3 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|397781216|ref|YP_006545689.1| - 0.0012 18.7 0.0 0.0028 17.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|397781216|ref|YP_006545689.1| - 0.004 17.0 0.2 0.026 14.3 0.0 2.6 3 1 0 3 3 3 1 AAA domain Mg_chelatase PF01078.16 gi|397781216|ref|YP_006545689.1| - 0.0057 15.8 0.1 0.019 14.1 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|397781216|ref|YP_006545689.1| - 0.0068 15.5 0.0 0.015 14.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|397781216|ref|YP_006545689.1| - 0.0077 16.5 0.2 0.041 14.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|397781216|ref|YP_006545689.1| - 0.01 15.3 0.2 0.06 12.8 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain DUF815 PF05673.8 gi|397781216|ref|YP_006545689.1| - 0.01 14.7 0.0 0.019 13.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|397781216|ref|YP_006545689.1| - 0.012 14.9 0.5 0.23 10.8 0.1 2.6 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|397781216|ref|YP_006545689.1| - 0.018 14.9 0.1 0.059 13.3 0.0 2.0 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|397781216|ref|YP_006545689.1| - 0.021 14.9 0.0 0.042 14.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|397781216|ref|YP_006545689.1| - 0.022 14.3 0.1 0.063 12.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|397781216|ref|YP_006545689.1| - 0.025 13.4 0.0 0.046 12.5 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|397781216|ref|YP_006545689.1| - 0.032 13.4 0.2 0.18 11.0 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein NACHT PF05729.7 gi|397781216|ref|YP_006545689.1| - 0.032 13.8 0.0 3.8 7.1 0.0 2.3 1 1 1 2 2 2 0 NACHT domain Sigma54_activ_2 PF14532.1 gi|397781216|ref|YP_006545689.1| - 0.04 13.9 0.0 0.13 12.2 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_3 PF07726.6 gi|397781216|ref|YP_006545689.1| - 0.047 13.2 0.0 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|397781216|ref|YP_006545689.1| - 0.082 12.0 0.1 0.42 9.7 0.0 2.0 1 1 1 2 2 2 0 KaiC DUF972 PF06156.8 gi|397781216|ref|YP_006545689.1| - 0.11 12.8 1.1 4 7.8 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF972) GrpE PF01025.14 gi|397781216|ref|YP_006545689.1| - 0.13 11.8 1.2 0.34 10.4 0.8 1.8 2 0 0 2 2 1 0 GrpE DUF2075 PF09848.4 gi|397781216|ref|YP_006545689.1| - 0.13 11.2 0.0 0.22 10.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF126 PF01989.11 gi|397781217|ref|YP_006545690.1| - 2.1e-37 126.6 0.3 2.6e-37 126.3 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF126 DnaJ PF00226.26 gi|397781218|ref|YP_006545691.1| - 3.6e-26 90.6 0.4 4.4e-26 90.3 0.3 1.1 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|397781218|ref|YP_006545691.1| - 0.0086 15.4 0.1 0.086 12.2 0.0 2.0 2 0 0 2 2 2 1 A repeated domain in UCH-protein DUF3353 PF11833.3 gi|397781218|ref|YP_006545691.1| - 0.48 9.8 2.7 0.88 9.0 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) Rubredoxin PF00301.15 gi|590000712|ref|YP_006545692.2| - 5.4e-37 125.4 7.7 9.2e-19 67.0 0.3 2.2 2 0 0 2 2 2 2 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|590000712|ref|YP_006545692.2| - 0.00053 19.7 7.4 0.069 12.9 0.1 3.2 3 0 0 3 3 3 1 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|590000712|ref|YP_006545692.2| - 0.00084 19.5 14.5 0.76 10.1 0.4 4.2 4 0 0 4 4 4 2 Zinc-finger double domain zf-C2H2_4 PF13894.1 gi|590000712|ref|YP_006545692.2| - 0.0055 16.9 10.4 6.6 7.3 0.0 4.1 4 0 0 4 4 4 0 C2H2-type zinc finger zf-nanos PF05741.8 gi|590000712|ref|YP_006545692.2| - 0.0062 16.4 8.2 0.81 9.7 0.0 4.0 4 0 0 4 4 4 1 Nanos RNA binding domain OrfB_Zn_ribbon PF07282.6 gi|590000712|ref|YP_006545692.2| - 0.007 16.0 1.7 0.4 10.3 0.0 3.1 3 1 0 3 3 3 1 Putative transposase DNA-binding domain Elf1 PF05129.8 gi|590000712|ref|YP_006545692.2| - 0.009 15.6 2.2 2.5 7.8 0.0 3.6 2 1 1 3 3 3 1 Transcription elongation factor Elf1 like Nudix_N_2 PF14803.1 gi|590000712|ref|YP_006545692.2| - 0.013 15.2 8.2 6.3 6.5 0.0 4.1 4 0 0 4 4 4 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|590000712|ref|YP_006545692.2| - 0.013 14.7 11.4 4.1 6.7 0.1 4.0 4 0 0 4 4 4 0 TFIIB zinc-binding DZR PF12773.2 gi|590000712|ref|YP_006545692.2| - 0.015 15.1 4.8 1.6 8.6 1.6 3.2 2 1 0 2 2 2 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|590000712|ref|YP_006545692.2| - 0.049 13.4 3.9 14 5.5 0.1 3.4 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) IBR PF01485.16 gi|590000712|ref|YP_006545692.2| - 0.053 13.4 1.0 7.5 6.5 0.1 2.2 2 0 0 2 2 2 0 IBR domain zf-Mss51 PF13824.1 gi|590000712|ref|YP_006545692.2| - 0.064 13.1 5.9 1.6 8.6 0.2 3.3 3 1 1 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-BED PF02892.10 gi|590000712|ref|YP_006545692.2| - 0.069 12.9 4.4 0.73 9.6 0.2 2.7 3 0 0 3 3 3 0 BED zinc finger HypA PF01155.14 gi|590000712|ref|YP_006545692.2| - 0.082 12.6 0.4 12 5.5 0.0 2.3 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF2296 PF10058.4 gi|590000712|ref|YP_006545692.2| - 0.095 12.4 9.7 4.1 7.2 0.0 4.0 4 0 0 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C2H2 PF00096.21 gi|590000712|ref|YP_006545692.2| - 0.11 12.8 17.1 11 6.5 0.4 4.2 4 0 0 4 4 4 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|590000712|ref|YP_006545692.2| - 0.2 11.6 12.9 8.9 6.3 0.3 4.1 4 0 0 4 4 4 0 Zinc ribbon domain PyrI_C PF02748.10 gi|590000712|ref|YP_006545692.2| - 0.41 10.1 5.1 2.1 7.8 1.0 2.5 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Rad50_zn_hook PF04423.9 gi|590000712|ref|YP_006545692.2| - 0.52 9.8 2.9 8.4 5.9 0.1 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-HIT PF04438.11 gi|590000712|ref|YP_006545692.2| - 0.95 9.1 19.1 6.2 6.5 0.0 4.1 4 0 0 4 4 4 0 HIT zinc finger C1_3 PF07649.7 gi|590000712|ref|YP_006545692.2| - 1.6 8.8 14.7 12 6.0 0.1 4.2 4 0 0 4 4 4 0 C1-like domain zf-C2H2_3 PF13878.1 gi|590000712|ref|YP_006545692.2| - 1.8 8.1 9.3 7.3 6.2 0.2 3.7 4 0 0 4 4 4 0 zinc-finger of acetyl-transferase ESCO zf-AN1 PF01428.11 gi|590000712|ref|YP_006545692.2| - 2.7 7.9 5.4 66 3.4 0.2 3.7 4 0 0 4 4 4 0 AN1-like Zinc finger RRN7 PF11781.3 gi|590000712|ref|YP_006545692.2| - 2.7 7.5 0.0 2.7 7.5 0.0 3.4 4 0 0 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 Tnp_zf-ribbon_2 PF13842.1 gi|590000712|ref|YP_006545692.2| - 3.8 8.0 9.9 11 6.5 0.0 3.6 3 1 1 4 4 4 0 DDE_Tnp_1-like zinc-ribbon DUF1610 PF07754.6 gi|590000712|ref|YP_006545692.2| - 4 7.6 17.4 1.5 9.0 0.2 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) zf-H2C2_5 PF13909.1 gi|590000712|ref|YP_006545692.2| - 4.1 7.8 14.2 3.2 8.1 1.3 3.9 4 0 0 4 4 4 0 C2H2-type zinc-finger domain zf-ribbon_3 PF13248.1 gi|590000712|ref|YP_006545692.2| - 4.3 6.6 11.8 7.1 5.9 0.2 3.8 4 0 0 4 4 4 0 zinc-ribbon domain UPF0547 PF10571.4 gi|590000712|ref|YP_006545692.2| - 6.9 6.4 13.8 12 5.7 0.1 4.1 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.5 gi|590000712|ref|YP_006545692.2| - 7.7 6.1 14.8 21 4.7 0.1 4.0 4 0 0 4 4 4 0 A2L zinc ribbon domain Rpr2 PF04032.11 gi|590000712|ref|YP_006545692.2| - 8.1 6.3 6.5 5.6 6.8 1.3 2.5 3 1 0 3 3 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain RQC PF09382.5 gi|397781220|ref|YP_006545693.1| - 7.7e-25 86.6 0.0 1.6e-24 85.6 0.0 1.6 1 0 0 1 1 1 1 RQC domain Helicase_C PF00271.26 gi|397781220|ref|YP_006545693.1| - 6.4e-21 74.0 0.0 1.1e-18 66.8 0.0 2.5 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.24 gi|397781220|ref|YP_006545693.1| - 1.1e-18 67.2 0.0 1.9e-18 66.5 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase HRDC PF00570.18 gi|397781220|ref|YP_006545693.1| - 1.4e-18 66.3 0.0 2.6e-18 65.5 0.0 1.5 1 0 0 1 1 1 1 HRDC domain ResIII PF04851.10 gi|397781220|ref|YP_006545693.1| - 0.0043 16.9 0.0 0.036 13.9 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Exo_endo_phos PF03372.18 gi|397781221|ref|YP_006545694.1| - 6.5e-13 49.1 0.1 8.3e-13 48.8 0.1 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Filamin PF00630.14 gi|397781222|ref|YP_006545695.1| - 0.0018 18.7 0.0 0.0055 17.2 0.0 1.8 1 0 0 1 1 1 1 Filamin/ABP280 repeat Big_1 PF02369.11 gi|397781222|ref|YP_006545695.1| - 0.019 14.8 3.3 0.019 14.8 2.3 2.8 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 1) DUF3381 PF11861.3 gi|397781222|ref|YP_006545695.1| - 0.028 13.9 8.1 0.052 13.0 5.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3381) PKD PF00801.15 gi|397781222|ref|YP_006545695.1| - 0.062 13.0 5.6 0.2 11.4 3.9 2.0 1 1 0 1 1 1 0 PKD domain Big_3_4 PF13754.1 gi|397781222|ref|YP_006545695.1| - 0.51 10.6 11.7 0.061 13.6 3.4 2.8 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) He_PIG PF05345.7 gi|397781222|ref|YP_006545695.1| - 0.97 9.5 12.1 0.099 12.6 3.4 2.8 2 1 0 2 2 2 0 Putative Ig domain E1-E2_ATPase PF00122.15 gi|397781223|ref|YP_006545696.1| - 8.8e-53 178.6 0.7 1.9e-52 177.6 0.5 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|397781223|ref|YP_006545696.1| - 1.7e-46 159.3 0.8 3.4e-46 158.3 0.5 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|397781223|ref|YP_006545696.1| - 2.8e-16 60.2 0.0 5.4e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|397781223|ref|YP_006545696.1| - 1.8e-05 24.4 0.0 0.0006 19.4 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase SHOCT PF09851.4 gi|397781224|ref|YP_006545697.1| - 1.3e-07 30.8 3.4 1.7e-07 30.4 2.3 1.2 1 0 0 1 1 1 1 Short C-terminal domain Acyl_transf_3 PF01757.17 gi|397781224|ref|YP_006545697.1| - 0.00054 18.8 4.3 0.00062 18.6 3.0 1.0 1 0 0 1 1 1 1 Acyltransferase family DUF805 PF05656.9 gi|397781224|ref|YP_006545697.1| - 0.00055 19.7 2.3 0.00062 19.5 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF805) UPF0104 PF03706.8 gi|397781224|ref|YP_006545697.1| - 0.0032 16.7 0.2 0.0033 16.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF1707 PF08044.6 gi|397781224|ref|YP_006545697.1| - 0.013 15.1 0.4 0.026 14.2 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) DUF2142 PF09913.4 gi|397781224|ref|YP_006545697.1| - 0.014 14.0 1.6 0.017 13.8 1.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) GvpG PF05120.7 gi|397781224|ref|YP_006545697.1| - 0.02 14.6 0.2 0.03 14.1 0.1 1.2 1 0 0 1 1 1 0 Gas vesicle protein G DUF2975 PF11188.3 gi|397781224|ref|YP_006545697.1| - 0.28 10.8 4.9 0.37 10.5 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) TMEM156 PF15106.1 gi|397781224|ref|YP_006545697.1| - 0.67 9.1 2.5 0.31 10.2 0.2 1.5 1 1 1 2 2 2 0 TMEM156 protein family ABC2_membrane_3 PF12698.2 gi|397781224|ref|YP_006545697.1| - 0.78 8.7 3.7 0.98 8.3 2.6 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein PQ-loop PF04193.9 gi|397781224|ref|YP_006545697.1| - 4.8 6.8 7.0 18 4.9 0.1 2.1 2 0 0 2 2 2 0 PQ loop repeat PLDc_N PF13396.1 gi|397781224|ref|YP_006545697.1| - 9.4 5.9 14.8 21 4.8 9.1 2.4 1 1 1 2 2 2 0 Phospholipase_D-nuclease N-terminal PAS_9 PF13426.1 gi|397781225|ref|YP_006545698.1| - 8.7e-33 112.8 0.0 3.1e-13 49.9 0.0 4.4 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|397781225|ref|YP_006545698.1| - 3.1e-29 101.0 0.2 2.2e-16 59.6 0.0 3.6 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|397781225|ref|YP_006545698.1| - 2.9e-24 85.2 2.7 1.1e-12 47.9 0.0 4.1 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|397781225|ref|YP_006545698.1| - 1.5e-19 69.7 0.0 2.8e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|397781225|ref|YP_006545698.1| - 1.8e-19 68.8 1.0 4.2e-08 32.7 0.0 3.9 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.1 gi|397781225|ref|YP_006545698.1| - 3.1e-14 53.6 0.5 3.9e-13 50.1 0.1 2.6 3 0 0 3 3 2 1 GAF domain GAF_3 PF13492.1 gi|397781225|ref|YP_006545698.1| - 8.2e-11 42.1 0.0 3e-10 40.3 0.0 2.0 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.2 gi|397781225|ref|YP_006545698.1| - 1.6e-09 37.7 0.1 5.8e-05 23.0 0.0 3.5 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|397781225|ref|YP_006545698.1| - 1.4e-07 31.4 0.0 0.0012 18.8 0.0 3.2 4 0 0 4 4 4 2 PAS fold GAF PF01590.21 gi|397781225|ref|YP_006545698.1| - 6.8e-07 29.5 0.1 7.9e-05 22.8 0.0 3.6 3 1 0 3 3 3 1 GAF domain PAS_10 PF13596.1 gi|397781225|ref|YP_006545698.1| - 5.6e-05 23.3 0.0 0.00066 19.9 0.0 2.5 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|397781225|ref|YP_006545698.1| - 0.00052 19.7 0.2 0.0014 18.4 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Tbf5 PF06331.7 gi|397781225|ref|YP_006545698.1| - 0.11 12.2 0.0 1.8 8.4 0.0 2.9 3 0 0 3 3 3 0 Transcription factor TFIIH complex subunit Tfb5 HATPase_c_3 PF13589.1 gi|397781225|ref|YP_006545698.1| - 0.22 11.1 0.0 0.4 10.3 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDDEXK_1 PF12705.2 gi|397781226|ref|YP_006545699.1| - 1.3e-43 149.2 0.0 2e-43 148.6 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Exonuc_V_gamma PF04257.9 gi|397781226|ref|YP_006545699.1| - 1.6e-09 36.4 0.0 0.00024 19.2 0.0 2.1 2 0 0 2 2 2 2 Exodeoxyribonuclease V, gamma subunit UvrD_C PF13361.1 gi|397781226|ref|YP_006545699.1| - 0.031 13.7 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.16 gi|397781227|ref|YP_006545700.1| - 7.6e-56 189.6 0.0 9.4e-28 97.4 0.0 2.2 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|397781227|ref|YP_006545700.1| - 4.6e-48 164.4 0.0 6.6e-48 163.9 0.0 1.2 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|397781227|ref|YP_006545700.1| - 2.2e-16 60.0 0.0 9.5e-16 57.9 0.0 2.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|397781227|ref|YP_006545700.1| - 1.5e-11 43.8 0.2 9.2e-11 41.3 0.1 2.5 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|397781227|ref|YP_006545700.1| - 2.2e-10 40.6 0.0 7.8e-05 22.7 0.0 2.5 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|397781227|ref|YP_006545700.1| - 1e-05 25.1 0.6 0.79 9.1 0.0 4.1 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|397781227|ref|YP_006545700.1| - 6.2e-05 22.6 2.0 0.00041 19.9 0.1 2.8 3 0 0 3 3 3 1 AAA domain PhoH PF02562.11 gi|397781227|ref|YP_006545700.1| - 0.012 14.8 0.6 0.85 8.8 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_12 PF13087.1 gi|397781227|ref|YP_006545700.1| - 0.4 10.0 0.0 3.3 7.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain E1-E2_ATPase PF00122.15 gi|397781228|ref|YP_006545701.1| - 1.2e-51 174.9 0.1 1.2e-51 174.9 0.1 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|397781228|ref|YP_006545701.1| - 4.6e-49 167.7 3.0 8.6e-49 166.8 1.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|397781228|ref|YP_006545701.1| - 1.9e-19 70.5 0.0 4.8e-19 69.2 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|397781228|ref|YP_006545701.1| - 0.00072 19.2 1.6 0.0024 17.4 0.7 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase GerE PF00196.14 gi|397781228|ref|YP_006545701.1| - 0.0063 15.8 0.0 4.1 6.7 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family PAS_4 PF08448.5 gi|397781229|ref|YP_006545702.1| - 2.7e-53 178.6 11.8 1.2e-13 51.0 0.0 5.8 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.1 gi|397781229|ref|YP_006545702.1| - 2.9e-51 172.1 0.0 6.2e-12 45.8 0.0 5.5 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|397781229|ref|YP_006545702.1| - 6.5e-40 135.4 0.0 8.5e-14 51.2 0.0 5.5 5 0 0 5 5 5 5 PAS fold PAS_3 PF08447.6 gi|397781229|ref|YP_006545702.1| - 3.2e-34 116.8 0.0 8.8e-17 60.9 0.0 5.1 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.1 gi|397781229|ref|YP_006545702.1| - 3.4e-32 109.2 0.5 1.2e-10 40.8 0.0 5.7 5 0 0 5 5 5 5 PAS domain PAS_7 PF12860.2 gi|397781229|ref|YP_006545702.1| - 9.5e-05 22.3 0.5 0.28 11.1 0.0 4.6 4 2 0 4 4 4 1 PAS fold GAF_2 PF13185.1 gi|397781229|ref|YP_006545702.1| - 0.00049 20.6 0.6 0.41 11.1 0.1 4.0 5 0 0 5 5 5 1 GAF domain HisKA PF00512.20 gi|397781229|ref|YP_006545702.1| - 0.0016 18.4 6.0 0.0017 18.3 0.0 3.7 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|397781229|ref|YP_006545702.1| - 0.0065 16.5 0.2 0.23 11.5 0.0 3.6 3 2 0 3 3 3 1 GAF domain OrfB_IS605 PF01385.14 gi|397781230|ref|YP_006545703.1| - 4.4e-43 147.2 0.0 1e-42 146.0 0.0 1.6 1 1 1 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|397781230|ref|YP_006545703.1| - 0.00031 20.3 0.1 0.0018 17.9 0.0 2.3 2 1 0 2 2 2 1 Putative transposase DNA-binding domain PAS_4 PF08448.5 gi|397781231|ref|YP_006545704.1| - 1e-12 48.0 0.2 2.2e-12 46.9 0.1 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|397781231|ref|YP_006545704.1| - 1.5e-12 47.7 0.0 1.9e-11 44.2 0.0 2.4 2 1 1 3 3 3 1 PAS domain HATPase_c PF02518.21 gi|397781231|ref|YP_006545704.1| - 5.2e-11 42.2 0.1 9.1e-11 41.4 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|397781231|ref|YP_006545704.1| - 3.4e-10 39.7 0.0 1.1e-09 38.0 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.6 gi|397781231|ref|YP_006545704.1| - 0.00087 19.3 0.0 0.0018 18.3 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|397781231|ref|YP_006545704.1| - 0.0011 18.7 0.4 0.0042 16.9 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|397781231|ref|YP_006545704.1| - 0.0022 18.0 0.0 0.0063 16.5 0.0 1.8 1 1 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|397781231|ref|YP_006545704.1| - 0.031 13.9 0.0 0.051 13.2 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|397781231|ref|YP_006545704.1| - 0.044 13.5 0.0 0.079 12.6 0.0 1.3 1 0 0 1 1 1 0 GHKL domain Methyltransf_2 PF00891.13 gi|397781232|ref|YP_006545705.1| - 2e-15 56.6 0.0 4.2e-15 55.6 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|397781232|ref|YP_006545705.1| - 4.9e-10 39.9 0.0 9.6e-10 39.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397781232|ref|YP_006545705.1| - 5.6e-08 32.6 0.0 8.2e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397781232|ref|YP_006545705.1| - 1e-07 32.3 0.0 2e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Dimerisation PF08100.6 gi|397781232|ref|YP_006545705.1| - 0.002 17.9 0.0 0.018 14.8 0.0 2.2 2 0 0 2 2 2 1 Dimerisation domain Methyltransf_31 PF13847.1 gi|397781232|ref|YP_006545705.1| - 0.0022 17.5 0.0 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|397781232|ref|YP_006545705.1| - 0.0032 16.9 0.0 0.0057 16.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.9 gi|397781232|ref|YP_006545705.1| - 0.012 14.9 0.0 0.022 14.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|397781232|ref|YP_006545705.1| - 0.018 15.0 0.0 0.039 13.9 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|397781232|ref|YP_006545705.1| - 0.051 14.0 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DUF364 PF04016.7 gi|397781233|ref|YP_006545706.1| - 1.2e-48 164.2 0.0 1.7e-48 163.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|397781233|ref|YP_006545706.1| - 2.5e-21 75.5 0.0 5e-21 74.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) DUF4350 PF14258.1 gi|397781233|ref|YP_006545706.1| - 0.0029 17.7 0.7 0.078 13.1 0.0 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4350) RuvB_N PF05496.7 gi|397781234|ref|YP_006545707.1| - 3.3e-108 360.1 0.0 4e-108 359.8 0.0 1.1 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus RuvB_C PF05491.8 gi|397781234|ref|YP_006545707.1| - 3.2e-30 103.5 0.1 9.9e-30 101.9 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB C-terminus AAA PF00004.24 gi|397781234|ref|YP_006545707.1| - 3.5e-16 59.5 0.0 2.8e-15 56.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|397781234|ref|YP_006545707.1| - 6.3e-09 35.6 0.0 0.00022 20.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|397781234|ref|YP_006545707.1| - 1.8e-06 27.3 0.1 0.00062 18.9 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|397781234|ref|YP_006545707.1| - 1e-05 25.6 0.1 0.016 15.3 0.0 2.3 1 1 1 2 2 2 2 AAA domain TIP49 PF06068.8 gi|397781234|ref|YP_006545707.1| - 1.5e-05 23.9 0.2 0.00034 19.4 0.0 2.3 2 0 0 2 2 2 1 TIP49 C-terminus AAA_17 PF13207.1 gi|397781234|ref|YP_006545707.1| - 0.00011 22.9 0.0 0.00022 22.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|397781234|ref|YP_006545707.1| - 0.00037 20.0 0.0 0.022 14.3 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|397781234|ref|YP_006545707.1| - 0.00056 19.4 0.0 0.87 9.0 0.0 2.2 1 1 1 2 2 2 2 Sigma-54 interaction domain AAA_16 PF13191.1 gi|397781234|ref|YP_006545707.1| - 0.00073 19.5 0.1 0.0041 17.1 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|397781234|ref|YP_006545707.1| - 0.00074 19.8 0.0 0.0012 19.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|397781234|ref|YP_006545707.1| - 0.00074 19.2 0.0 0.0092 15.6 0.0 2.5 3 0 0 3 3 3 1 Bacterial dnaA protein AAA_19 PF13245.1 gi|397781234|ref|YP_006545707.1| - 0.0019 17.8 0.6 0.0038 16.9 0.1 1.8 2 0 0 2 2 1 1 Part of AAA domain Rad17 PF03215.10 gi|397781234|ref|YP_006545707.1| - 0.0064 15.2 0.0 0.0085 14.8 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein Sigma54_activ_2 PF14532.1 gi|397781234|ref|YP_006545707.1| - 0.0072 16.3 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_33 PF13671.1 gi|397781234|ref|YP_006545707.1| - 0.0088 15.9 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|397781234|ref|YP_006545707.1| - 0.013 15.3 0.0 0.42 10.4 0.0 2.2 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_10 PF12846.2 gi|397781234|ref|YP_006545707.1| - 0.014 14.8 0.0 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|397781234|ref|YP_006545707.1| - 0.018 14.9 0.0 0.054 13.3 0.0 1.8 2 1 0 2 2 1 0 AAA domain AAA_28 PF13521.1 gi|397781234|ref|YP_006545707.1| - 0.02 14.8 0.0 0.043 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|397781234|ref|YP_006545707.1| - 0.021 14.5 0.1 0.25 11.0 0.0 2.2 1 1 0 2 2 2 0 NTPase ResIII PF04851.10 gi|397781234|ref|YP_006545707.1| - 0.032 14.0 0.1 6.7 6.4 0.0 2.1 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|397781234|ref|YP_006545707.1| - 0.034 14.3 0.0 0.052 13.7 0.0 1.3 1 0 0 1 1 1 0 RNA helicase MobB PF03205.9 gi|397781234|ref|YP_006545707.1| - 0.038 13.6 0.0 0.12 12.0 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|397781234|ref|YP_006545707.1| - 0.073 12.1 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin MCM PF00493.18 gi|397781234|ref|YP_006545707.1| - 0.084 11.6 0.1 1.4 7.6 0.1 2.1 1 1 0 1 1 1 0 MCM2/3/5 family NACHT PF05729.7 gi|397781234|ref|YP_006545707.1| - 0.084 12.5 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.12 gi|397781234|ref|YP_006545707.1| - 0.098 12.0 1.5 0.27 10.6 0.1 2.3 2 1 0 2 2 1 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|397781234|ref|YP_006545707.1| - 0.1 11.4 0.0 0.19 10.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain UPF0079 PF02367.12 gi|397781234|ref|YP_006545707.1| - 0.12 11.9 0.0 0.24 11.0 0.0 1.5 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|397781234|ref|YP_006545707.1| - 0.12 12.6 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter RuvA_N PF01330.16 gi|397781235|ref|YP_006545708.1| - 1.4e-17 63.2 0.0 2.8e-17 62.2 0.0 1.5 1 0 0 1 1 1 1 RuvA N terminal domain RuvA_C PF07499.8 gi|397781235|ref|YP_006545708.1| - 3.3e-13 49.5 0.2 5.9e-13 48.7 0.1 1.4 1 0 0 1 1 1 1 RuvA, C-terminal domain HHH_5 PF14520.1 gi|397781235|ref|YP_006545708.1| - 5.9e-13 48.7 0.4 1.4e-10 41.2 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|397781235|ref|YP_006545708.1| - 3.7e-05 23.1 0.4 0.027 14.1 0.0 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix motif Transposase_20 PF02371.11 gi|397781235|ref|YP_006545708.1| - 4.7e-05 23.4 0.1 0.11 12.5 0.0 2.3 2 0 0 2 2 2 2 Transposase IS116/IS110/IS902 family 5_3_exonuc PF01367.15 gi|397781235|ref|YP_006545708.1| - 0.0012 19.0 0.1 1.5 9.0 0.0 2.3 1 1 1 2 2 2 2 5'-3' exonuclease, C-terminal SAM fold Se-cys_synth_N PF12390.3 gi|397781235|ref|YP_006545708.1| - 0.0042 17.1 0.8 0.037 14.1 0.2 2.3 2 0 0 2 2 2 1 Selenocysteine synthase N terminal IMS_HHH PF11798.3 gi|397781235|ref|YP_006545708.1| - 0.0044 16.9 0.4 0.16 12.0 0.0 3.0 3 0 0 3 3 3 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|397781235|ref|YP_006545708.1| - 0.005 16.3 0.0 1.5 8.3 0.0 2.9 4 0 0 4 4 4 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|397781235|ref|YP_006545708.1| - 0.018 14.9 0.0 0.086 12.7 0.0 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|397781235|ref|YP_006545708.1| - 0.038 13.9 0.0 2.1 8.3 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF348 PF03990.9 gi|397781235|ref|YP_006545708.1| - 0.06 12.9 1.4 0.55 9.8 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF348) RuvC PF02075.12 gi|397781236|ref|YP_006545709.1| - 1.3e-52 177.5 0.0 1.5e-52 177.3 0.0 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC DegT_DnrJ_EryC1 PF01041.12 gi|397781237|ref|YP_006545710.1| - 2.3e-130 434.8 0.3 2.5e-130 434.7 0.2 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|397781237|ref|YP_006545710.1| - 1.2e-06 27.8 0.4 1.8e-06 27.3 0.3 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|397781237|ref|YP_006545710.1| - 4.3e-06 25.9 0.0 5.8e-06 25.4 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|397781237|ref|YP_006545710.1| - 5e-05 22.2 0.0 6.9e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|397781237|ref|YP_006545710.1| - 0.00036 18.9 0.0 0.00047 18.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GFO_IDH_MocA PF01408.17 gi|397781238|ref|YP_006545711.1| - 1.8e-17 63.9 0.2 2.7e-17 63.3 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|397781238|ref|YP_006545711.1| - 5.3e-07 29.6 0.1 9.1e-07 28.8 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|397781238|ref|YP_006545711.1| - 1.4e-05 24.3 0.2 2.5e-05 23.4 0.1 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|397781238|ref|YP_006545711.1| - 0.0005 20.4 0.3 0.002 18.5 0.1 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.14 gi|397781238|ref|YP_006545711.1| - 0.0012 19.2 0.1 0.0027 18.1 0.1 1.6 1 0 0 1 1 1 1 CoA binding domain OCD_Mu_crystall PF02423.10 gi|397781238|ref|YP_006545711.1| - 0.018 13.8 0.4 0.027 13.2 0.3 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family IlvN PF07991.7 gi|397781238|ref|YP_006545711.1| - 0.037 13.4 0.1 0.076 12.3 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain KTSC PF13619.1 gi|397781239|ref|YP_006545712.1| - 2.1e-24 84.9 0.0 2.3e-24 84.7 0.0 1.0 1 0 0 1 1 1 1 KTSC domain DUF1748 PF08520.5 gi|397781239|ref|YP_006545712.1| - 0.13 11.9 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF1748) Arch_ATPase PF01637.13 gi|397781241|ref|YP_006545714.1| - 2e-33 116.0 0.0 2.7e-33 115.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|397781241|ref|YP_006545714.1| - 3e-29 101.0 0.0 8e-29 99.7 0.0 1.7 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|397781241|ref|YP_006545714.1| - 1.1e-07 31.8 0.0 1.9e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|397781241|ref|YP_006545714.1| - 1.1e-05 25.5 0.0 1.7e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain HTH_5 PF01022.15 gi|397781241|ref|YP_006545714.1| - 0.00013 21.5 0.2 0.0003 20.4 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family AAA_22 PF13401.1 gi|397781241|ref|YP_006545714.1| - 0.0016 18.5 0.0 0.0042 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain MarR_2 PF12802.2 gi|397781241|ref|YP_006545714.1| - 0.0089 15.6 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|397781241|ref|YP_006545714.1| - 0.027 14.0 0.0 0.07 12.7 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|397781241|ref|YP_006545714.1| - 0.032 14.0 0.0 0.08 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_36 PF13730.1 gi|397781241|ref|YP_006545714.1| - 0.046 13.8 0.1 0.096 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TPR_11 PF13414.1 gi|397781242|ref|YP_006545715.1| - 4.5e-07 29.4 0.5 4.5e-07 29.4 0.4 3.5 2 1 2 4 4 4 2 TPR repeat TPR_16 PF13432.1 gi|397781242|ref|YP_006545715.1| - 1.1e-05 25.9 3.5 0.67 10.6 0.1 3.4 1 1 2 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|397781242|ref|YP_006545715.1| - 1.6e-05 24.9 5.7 1.6e-05 24.9 3.9 2.4 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.1 gi|397781242|ref|YP_006545715.1| - 5.6e-05 23.0 8.0 5.8e-05 22.9 0.1 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|397781242|ref|YP_006545715.1| - 6e-05 22.6 14.3 0.00097 18.8 0.5 4.0 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|397781242|ref|YP_006545715.1| - 9.6e-05 22.6 0.1 2.2 9.1 0.0 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|397781242|ref|YP_006545715.1| - 0.00079 19.3 8.8 0.024 14.5 0.8 3.8 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|397781242|ref|YP_006545715.1| - 0.0012 19.1 1.5 0.24 11.7 0.1 3.1 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|397781242|ref|YP_006545715.1| - 0.28 11.0 13.1 1.3 8.9 1.7 4.6 4 1 0 4 4 4 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|397781242|ref|YP_006545715.1| - 0.47 10.1 19.5 0.21 11.2 1.9 4.8 5 0 0 5 5 5 0 Tetratricopeptide repeat MIT PF04212.13 gi|397781242|ref|YP_006545715.1| - 4.3 7.3 9.1 0.63 9.9 0.5 3.4 4 0 0 4 4 4 0 MIT (microtubule interacting and transport) domain eIF-1a PF01176.14 gi|397781243|ref|YP_006545716.1| - 0.11 11.8 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 DUF86 PF01934.12 gi|397781244|ref|YP_006545717.1| - 1.1e-23 83.1 0.0 1.3e-23 82.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Orthopox_F14 PF06076.7 gi|397781244|ref|YP_006545717.1| - 0.12 12.4 0.1 0.2 11.7 0.1 1.4 1 0 0 1 1 1 0 Orthopoxvirus F14 protein NTP_transf_2 PF01909.18 gi|397781245|ref|YP_006545718.1| - 0.0046 17.2 0.0 0.0065 16.7 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF4651 PF15513.1 gi|397781245|ref|YP_006545718.1| - 0.02 14.3 0.0 0.055 12.9 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4651) HMGL-like PF00682.14 gi|397781245|ref|YP_006545718.1| - 0.13 11.8 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 HMGL-like DUF4428 PF14471.1 gi|397781246|ref|YP_006545719.1| - 0.0002 21.0 0.8 0.044 13.5 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4428) Mg_chelatase PF01078.16 gi|397781246|ref|YP_006545719.1| - 0.029 13.5 0.0 1.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|397781246|ref|YP_006545719.1| - 0.059 13.5 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Prim_Zn_Ribbon PF08273.7 gi|397781246|ref|YP_006545719.1| - 1.2 9.2 8.1 2.9 8.0 1.7 2.7 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Pertussis_S1 PF02917.9 gi|397781247|ref|YP_006545720.1| - 0.02 14.4 0.0 0.023 14.2 0.0 1.1 1 0 0 1 1 1 0 Pertussis toxin, subunit 1 AAA_16 PF13191.1 gi|397781249|ref|YP_006545722.1| - 1.3e-13 51.3 1.7 5.2e-13 49.3 0.5 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|397781249|ref|YP_006545722.1| - 3e-11 43.5 0.0 1.8e-10 41.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|397781249|ref|YP_006545722.1| - 1.7e-06 27.8 0.0 3.5e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_19 PF13245.1 gi|397781249|ref|YP_006545722.1| - 3.9e-06 26.5 0.2 3.9e-06 26.5 0.1 2.5 4 0 0 4 4 1 1 Part of AAA domain AAA PF00004.24 gi|397781249|ref|YP_006545722.1| - 9.5e-05 22.6 0.0 0.00023 21.3 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|397781249|ref|YP_006545722.1| - 0.00029 19.8 0.0 0.0015 17.5 0.0 2.0 3 0 0 3 3 3 1 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|397781249|ref|YP_006545722.1| - 0.00046 20.0 0.0 0.0021 17.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|397781249|ref|YP_006545722.1| - 0.0009 18.8 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|397781249|ref|YP_006545722.1| - 0.0023 16.8 0.0 0.0034 16.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|397781249|ref|YP_006545722.1| - 0.005 16.5 0.0 0.056 13.1 0.0 2.0 1 1 0 1 1 1 1 Archaeal ATPase AAA_30 PF13604.1 gi|397781249|ref|YP_006545722.1| - 0.0053 16.3 0.0 0.016 14.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|397781249|ref|YP_006545722.1| - 0.013 14.4 0.0 0.019 13.8 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.9 gi|397781249|ref|YP_006545722.1| - 0.016 14.9 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|397781249|ref|YP_006545722.1| - 0.024 14.3 0.0 0.059 13.0 0.0 1.7 1 0 0 1 1 1 0 NTPase AAA_17 PF13207.1 gi|397781249|ref|YP_006545722.1| - 0.025 15.3 1.0 0.27 12.0 0.4 2.5 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|397781249|ref|YP_006545722.1| - 0.035 14.0 0.0 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|397781249|ref|YP_006545722.1| - 0.039 13.8 0.0 0.095 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.7 gi|397781249|ref|YP_006545722.1| - 0.06 12.3 0.0 0.13 11.3 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus RNA_helicase PF00910.17 gi|397781249|ref|YP_006545722.1| - 0.077 13.1 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MobB PF03205.9 gi|397781249|ref|YP_006545722.1| - 0.078 12.6 0.0 0.34 10.6 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Sigma54_activat PF00158.21 gi|397781249|ref|YP_006545722.1| - 0.14 11.5 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.1 gi|397781249|ref|YP_006545722.1| - 0.17 12.1 0.4 1.3 9.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|397781249|ref|YP_006545722.1| - 0.21 10.5 0.0 0.29 10.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Syntaxin PF00804.20 gi|397781251|ref|YP_006545724.1| - 0.12 12.5 0.1 0.13 12.4 0.1 1.1 1 0 0 1 1 1 0 Syntaxin Epimerase PF01370.16 gi|397781253|ref|YP_006545726.1| - 4.3e-09 36.1 0.0 5.2e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.13 gi|397781253|ref|YP_006545726.1| - 0.00014 21.7 0.0 0.00019 21.4 0.0 1.1 1 0 0 1 1 1 1 TrkA-N domain 3Beta_HSD PF01073.14 gi|397781253|ref|YP_006545726.1| - 0.00019 20.2 0.0 0.00023 19.9 0.0 1.0 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|397781253|ref|YP_006545726.1| - 0.0006 19.8 0.0 0.00072 19.6 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|397781253|ref|YP_006545726.1| - 0.002 18.0 0.0 0.0025 17.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Saccharop_dh PF03435.13 gi|397781253|ref|YP_006545726.1| - 0.01 14.8 0.0 0.011 14.7 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|397781253|ref|YP_006545726.1| - 0.03 13.7 0.0 0.039 13.3 0.0 1.1 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CmcI PF04989.7 gi|397781253|ref|YP_006545726.1| - 0.033 13.5 0.0 0.041 13.1 0.0 1.0 1 0 0 1 1 1 0 Cephalosporin hydroxylase NmrA PF05368.8 gi|397781253|ref|YP_006545726.1| - 0.039 13.2 0.0 0.051 12.8 0.0 1.0 1 0 0 1 1 1 0 NmrA-like family KR PF08659.5 gi|397781253|ref|YP_006545726.1| - 0.14 11.8 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 KR domain Plasmid_stabil PF05016.9 gi|397781254|ref|YP_006545727.1| - 0.0021 18.4 0.1 0.0025 18.1 0.0 1.2 1 0 0 1 1 1 1 Plasmid stabilisation system protein Plasmid_Txe PF06769.8 gi|397781254|ref|YP_006545727.1| - 0.027 14.2 0.1 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 Plasmid encoded toxin Txe Plasmid_killer PF05015.8 gi|397781254|ref|YP_006545727.1| - 0.059 13.5 0.0 0.068 13.3 0.0 1.4 1 1 0 1 1 1 0 Plasmid maintenance system killer protein DegT_DnrJ_EryC1 PF01041.12 gi|397781256|ref|YP_006545729.1| - 2.3e-130 434.8 0.8 2.6e-130 434.6 0.6 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|397781256|ref|YP_006545729.1| - 6.5e-08 31.9 0.0 7.1e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|397781256|ref|YP_006545729.1| - 2e-06 27.1 0.6 3.2e-06 26.4 0.5 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|397781256|ref|YP_006545729.1| - 1.4e-05 24.0 0.1 2e-05 23.4 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|397781256|ref|YP_006545729.1| - 0.00057 18.2 0.1 0.00084 17.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|397781256|ref|YP_006545729.1| - 0.0026 16.3 0.0 0.0044 15.6 0.0 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain GFO_IDH_MocA PF01408.17 gi|590000715|ref|YP_009001432.1| - 3.2e-18 66.3 0.2 5.2e-18 65.6 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|590000715|ref|YP_009001432.1| - 8.3e-08 32.2 0.4 1.4e-07 31.5 0.3 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|590000715|ref|YP_009001432.1| - 6.1e-05 22.2 0.1 0.00012 21.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|590000715|ref|YP_009001432.1| - 0.0032 17.8 0.5 0.01 16.2 0.2 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.10 gi|590000715|ref|YP_009001432.1| - 0.01 14.6 0.3 0.017 13.9 0.2 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family CoA_binding PF02629.14 gi|590000715|ref|YP_009001432.1| - 0.011 16.1 0.5 0.026 15.0 0.3 1.6 1 0 0 1 1 1 0 CoA binding domain IlvN PF07991.7 gi|590000715|ref|YP_009001432.1| - 0.033 13.5 0.0 0.058 12.7 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Semialdhyde_dh PF01118.19 gi|590000715|ref|YP_009001432.1| - 0.33 11.2 1.9 4.8 7.4 0.5 2.9 2 2 1 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain Epimerase_2 PF02350.14 gi|590000716|ref|YP_006545730.2| - 1.9e-108 362.3 0.0 2.2e-108 362.1 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_1_4 PF13692.1 gi|590000716|ref|YP_006545730.2| - 0.0055 16.8 0.2 0.089 12.9 0.0 2.5 2 1 0 2 2 2 1 Glycosyl transferases group 1 DUF354 PF04007.7 gi|590000716|ref|YP_006545730.2| - 0.039 12.8 0.0 0.059 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) Glyco_transf_28 PF03033.15 gi|590000716|ref|YP_006545730.2| - 0.076 12.7 0.2 0.26 11.0 0.2 2.0 1 1 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Acylphosphatase PF00708.13 gi|397781259|ref|YP_006545732.1| - 2.6e-24 85.1 0.3 4.8e-24 84.2 0.2 1.4 1 0 0 1 1 1 1 Acylphosphatase TMF_TATA_bd PF12325.3 gi|397781259|ref|YP_006545732.1| - 0.023 14.4 1.2 0.037 13.7 0.8 1.4 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding ProRS-C_2 PF09181.5 gi|397781259|ref|YP_006545732.1| - 0.03 14.2 0.0 0.067 13.1 0.0 1.6 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal UDPG_MGDP_dh_N PF03721.9 gi|397781260|ref|YP_006545733.1| - 1.9e-33 115.3 0.0 3e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|397781260|ref|YP_006545733.1| - 2.1e-18 66.4 0.0 5.5e-18 65.0 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|397781260|ref|YP_006545733.1| - 2.2e-18 66.2 0.0 4.1e-18 65.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain Semialdhyde_dh PF01118.19 gi|397781260|ref|YP_006545733.1| - 0.0096 16.2 0.1 0.049 13.9 0.0 2.3 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|397781260|ref|YP_006545733.1| - 0.02 14.0 0.0 7.5 5.6 0.0 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GPI PF06560.6 gi|397781262|ref|YP_006545735.1| - 3.6e-47 159.7 0.0 4.9e-47 159.3 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|397781262|ref|YP_006545735.1| - 0.00031 20.1 0.7 0.0013 18.1 0.1 2.3 2 1 0 2 2 2 1 Cupin domain Cupin_1 PF00190.17 gi|397781262|ref|YP_006545735.1| - 0.017 14.5 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Cupin JmjC PF02373.17 gi|397781262|ref|YP_006545735.1| - 0.14 12.4 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 JmjC domain, hydroxylase Polysacc_synt PF01943.12 gi|397781266|ref|YP_006545739.1| - 5.1e-34 117.7 26.8 5.1e-34 117.7 18.6 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|397781266|ref|YP_006545739.1| - 1.2e-21 77.3 25.4 1.2e-21 77.3 17.6 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|397781266|ref|YP_006545739.1| - 3.6e-13 49.4 38.3 1.2e-08 34.7 9.7 3.0 2 1 1 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|397781266|ref|YP_006545739.1| - 2.4e-12 46.8 9.9 2.4e-12 46.8 6.9 4.9 2 2 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|397781266|ref|YP_006545739.1| - 0.017 13.5 39.7 0.0048 15.3 24.4 1.9 1 1 1 2 2 2 0 MviN-like protein YwiC PF14256.1 gi|397781267|ref|YP_006545740.1| - 0.42 10.7 0.1 0.42 10.7 0.0 3.3 2 1 0 2 2 2 0 YwiC-like protein Glycos_transf_1 PF00534.15 gi|397781268|ref|YP_006545741.1| - 1e-34 119.4 0.0 2.9e-34 117.9 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397781268|ref|YP_006545741.1| - 1.2e-15 57.8 0.0 2e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|397781268|ref|YP_006545741.1| - 1.8e-13 50.6 0.0 3.6e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|397781268|ref|YP_006545741.1| - 1.9e-06 28.1 0.0 4.9e-06 26.7 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|397781268|ref|YP_006545741.1| - 0.00055 20.1 0.1 0.005 17.0 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|397781268|ref|YP_006545741.1| - 0.0053 16.6 0.4 0.011 15.5 0.3 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|397781269|ref|YP_006545742.1| - 6.5e-38 129.8 0.1 1e-37 129.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397781269|ref|YP_006545742.1| - 9.9e-16 58.1 0.0 1.6e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|397781269|ref|YP_006545742.1| - 1.3e-09 38.0 5.8 1.9e-08 34.2 4.0 2.3 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|397781269|ref|YP_006545742.1| - 1.4e-05 25.2 0.0 3e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|397781269|ref|YP_006545742.1| - 3.8e-05 23.4 0.3 0.0019 17.9 0.2 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|397781269|ref|YP_006545742.1| - 0.00023 21.3 0.0 0.00034 20.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Hexapep_2 PF14602.1 gi|590000717|ref|YP_009001433.1| - 0.091 12.3 1.9 0.1 12.1 0.3 1.8 2 0 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.19 gi|590000718|ref|YP_009001434.1| - 3e-07 29.6 16.0 4.5e-05 22.7 2.5 3.5 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|590000718|ref|YP_009001434.1| - 4.7e-06 26.0 10.6 0.0028 17.1 2.1 3.2 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase adh_short PF00106.20 gi|590000719|ref|YP_009001435.1| - 4e-34 117.9 0.1 6.2e-34 117.3 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|590000719|ref|YP_009001435.1| - 9.1e-32 110.7 1.3 1.2e-31 110.3 0.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|590000719|ref|YP_009001435.1| - 4.5e-16 59.0 0.1 6.8e-16 58.4 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|590000719|ref|YP_009001435.1| - 1.2e-05 24.8 0.1 1.9e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|590000719|ref|YP_009001435.1| - 0.0046 15.8 0.6 0.0079 15.1 0.4 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Eno-Rase_NADH_b PF12242.3 gi|590000719|ref|YP_009001435.1| - 0.055 13.2 0.1 0.22 11.3 0.0 2.0 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_binding_10 PF13460.1 gi|590000719|ref|YP_009001435.1| - 0.094 12.7 0.1 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 NADH(P)-binding LuxC PF05893.9 gi|397781270|ref|YP_006545743.1| - 2.4e-75 253.7 0.0 2.9e-75 253.4 0.0 1.0 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) LuxE PF04443.7 gi|397781271|ref|YP_006545744.1| - 6.8e-48 163.2 0.0 8e-48 162.9 0.0 1.0 1 0 0 1 1 1 1 Acyl-protein synthetase, LuxE AMP-binding PF00501.23 gi|397781271|ref|YP_006545744.1| - 0.0016 16.9 0.0 0.0041 15.5 0.0 1.6 2 0 0 2 2 2 1 AMP-binding enzyme zf-CSL PF05207.8 gi|397781271|ref|YP_006545744.1| - 0.063 12.8 0.8 6.1 6.4 0.0 2.5 2 0 0 2 2 2 0 CSL zinc finger AMP-binding PF00501.23 gi|397781272|ref|YP_006545745.1| - 3.4e-76 256.3 0.0 4.2e-76 256.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|397781272|ref|YP_006545745.1| - 7.1e-10 39.6 0.0 1.7e-09 38.5 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain SBBP PF06739.6 gi|397781272|ref|YP_006545745.1| - 0.00083 19.0 0.3 0.019 14.7 0.1 2.5 2 0 0 2 2 2 1 Beta-propeller repeat ACPS PF01648.15 gi|590000720|ref|YP_009001436.1| - 1.4e-15 57.0 0.1 1.6e-15 56.8 0.1 1.0 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily Polysacc_deac_1 PF01522.16 gi|397781273|ref|YP_006545746.1| - 2.4e-21 75.6 0.0 3.5e-21 75.1 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF3473 PF11959.3 gi|397781273|ref|YP_006545746.1| - 1e-20 73.5 0.1 1.7e-20 72.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) Glycos_transf_2 PF00535.21 gi|397781274|ref|YP_006545747.1| - 9.3e-41 139.3 0.0 2.1e-21 76.3 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|397781274|ref|YP_006545747.1| - 5.7e-14 52.4 0.7 1.9e-06 27.8 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|397781274|ref|YP_006545747.1| - 3.2e-07 30.5 0.1 0.0084 16.3 0.0 3.1 2 1 1 3 3 3 2 Glycosyl transferase family 2 DUF4282 PF14110.1 gi|397781274|ref|YP_006545747.1| - 3.4 7.9 6.8 7.3 6.8 4.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) Plasmid_stabil PF05016.9 gi|397781275|ref|YP_006545748.1| - 7.9e-07 29.3 0.1 9.3e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|397781275|ref|YP_006545748.1| - 0.00087 19.2 0.0 0.0011 18.9 0.0 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) Plasmid_killer PF05015.8 gi|397781275|ref|YP_006545748.1| - 0.018 15.1 0.0 0.038 14.1 0.0 1.6 1 1 0 1 1 1 0 Plasmid maintenance system killer protein Exonuc_V_gamma PF04257.9 gi|397781276|ref|YP_006545749.1| - 0.02 12.8 0.0 0.022 12.7 0.0 1.0 1 0 0 1 1 1 0 Exodeoxyribonuclease V, gamma subunit RHH_1 PF01402.16 gi|397781276|ref|YP_006545749.1| - 2 8.4 5.9 35 4.5 0.0 3.3 3 1 0 4 4 4 0 Ribbon-helix-helix protein, copG family DUF86 PF01934.12 gi|397781278|ref|YP_006545751.1| - 1.1e-23 83.1 0.0 1.3e-23 82.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 PhdYeFM_antitox PF02604.14 gi|397781279|ref|YP_006545752.1| - 0.00021 20.7 0.0 0.00028 20.4 0.0 1.2 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system Plasmid_stabil PF05016.9 gi|397781280|ref|YP_006545753.1| - 0.0021 18.4 0.1 0.0038 17.6 0.1 1.5 1 1 0 1 1 1 1 Plasmid stabilisation system protein HEPN PF05168.9 gi|397781282|ref|YP_006545755.1| - 2.1e-13 50.2 0.1 2.9e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 HEPN domain HEPN PF05168.9 gi|397781283|ref|YP_006545756.1| - 0.00015 21.6 0.0 0.00016 21.5 0.0 1.0 1 0 0 1 1 1 1 HEPN domain PhdYeFM_antitox PF02604.14 gi|397781285|ref|YP_006545758.1| - 4.8e-08 32.4 0.1 6.3e-08 32.0 0.1 1.2 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system DUF1327 PF07041.6 gi|397781285|ref|YP_006545758.1| - 0.0094 15.8 0.0 0.011 15.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1327) NADHdh PF00146.16 gi|397781293|ref|YP_006545766.1| - 0.0029 16.7 3.8 0.0032 16.5 2.6 1.1 1 0 0 1 1 1 1 NADH dehydrogenase LtrA PF06772.6 gi|397781293|ref|YP_006545766.1| - 0.029 13.2 3.6 0.033 13.1 2.5 1.0 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) DUF423 PF04241.10 gi|397781293|ref|YP_006545766.1| - 0.036 13.9 0.6 0.036 13.9 0.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF423) DUF606 PF04657.8 gi|397781293|ref|YP_006545766.1| - 0.21 11.6 5.2 0.26 11.3 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF606 Peptidase_M50B PF13398.1 gi|397781293|ref|YP_006545766.1| - 0.77 9.1 9.0 0.9 8.8 6.3 1.1 1 0 0 1 1 1 0 Peptidase M50B-like MNHE PF01899.11 gi|397781293|ref|YP_006545766.1| - 1.9 8.0 7.1 2.4 7.8 4.9 1.1 1 0 0 1 1 1 0 Na+/H+ ion antiporter subunit DUF2644 PF10841.3 gi|397781293|ref|YP_006545766.1| - 4.2 7.4 6.9 3.2 7.8 0.3 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2644) DUF1430 PF07242.6 gi|397781293|ref|YP_006545766.1| - 6.3 6.9 10.4 1.5 8.9 3.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1430) O-antigen_lig PF13425.1 gi|397781293|ref|YP_006545766.1| - 7.9 6.4 12.3 10 6.0 8.5 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein VIT1 PF01988.14 gi|397781293|ref|YP_006545766.1| - 8.1 5.8 8.7 9.1 5.6 6.0 1.0 1 0 0 1 1 1 0 VIT family 2TM PF13239.1 gi|397781293|ref|YP_006545766.1| - 9.7 6.3 7.5 2.4 8.2 3.1 1.6 1 1 0 1 1 1 0 2TM domain CarboxypepD_reg PF13620.1 gi|397781294|ref|YP_006545767.1| - 0.00017 21.6 3.5 0.0033 17.4 0.3 2.8 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4129 PF13559.1 gi|397781294|ref|YP_006545767.1| - 0.016 15.1 1.2 0.016 15.1 0.8 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) DUF4350 PF14258.1 gi|397781295|ref|YP_006545768.1| - 7.4e-05 22.8 0.2 0.001 19.2 0.1 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|397781295|ref|YP_006545768.1| - 0.0055 16.2 0.0 0.0075 15.7 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system AAA_3 PF07726.6 gi|397781296|ref|YP_006545769.1| - 2.8e-52 175.7 0.1 5e-52 174.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|397781296|ref|YP_006545769.1| - 2.8e-12 46.5 0.0 6.7e-12 45.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|397781296|ref|YP_006545769.1| - 8.4e-08 31.3 0.0 7.6e-07 28.2 0.0 1.9 2 0 0 2 2 2 1 MCM2/3/5 family RuvB_N PF05496.7 gi|397781296|ref|YP_006545769.1| - 2.9e-06 26.5 0.0 9.3e-06 24.8 0.0 1.8 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|397781296|ref|YP_006545769.1| - 3.1e-06 27.4 0.0 7.6e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|397781296|ref|YP_006545769.1| - 0.00014 21.4 0.0 0.00034 20.3 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|397781296|ref|YP_006545769.1| - 0.00041 20.6 0.0 0.00062 20.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|397781296|ref|YP_006545769.1| - 0.003 17.0 0.0 0.11 11.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|397781296|ref|YP_006545769.1| - 0.006 17.4 0.0 0.015 16.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|397781296|ref|YP_006545769.1| - 0.033 13.7 0.0 0.1 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|397781296|ref|YP_006545769.1| - 0.038 13.1 0.0 0.31 10.1 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.10 gi|397781296|ref|YP_006545769.1| - 0.08 12.6 0.0 0.41 10.3 0.0 2.2 3 0 0 3 3 3 0 NTPase Malate_synthase PF01274.17 gi|397781296|ref|YP_006545769.1| - 0.097 10.6 0.0 0.12 10.3 0.0 1.1 1 0 0 1 1 1 0 Malate synthase AAA_22 PF13401.1 gi|397781296|ref|YP_006545769.1| - 0.14 12.2 0.2 16 5.6 0.0 2.6 2 1 1 3 3 3 0 AAA domain DUF58 PF01882.13 gi|397781297|ref|YP_006545770.1| - 2e-12 47.0 0.0 6.9e-12 45.3 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF58 O-antigen_lig PF13425.1 gi|397781298|ref|YP_006545771.1| - 1.7 8.6 6.8 2.2 8.2 4.7 1.3 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF4131 PF13567.1 gi|397781299|ref|YP_006545772.1| - 0.042 13.2 0.2 0.067 12.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3185 PF11381.3 gi|397781299|ref|YP_006545772.1| - 0.045 13.5 2.0 0.12 12.1 1.4 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3185) NfeD PF01957.13 gi|397781299|ref|YP_006545772.1| - 0.68 10.0 4.5 1.3 9.1 3.1 1.5 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF1616 PF07760.6 gi|397781300|ref|YP_006545773.1| - 5.6e-104 347.2 0.9 6.3e-104 347.1 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) MFS_1 PF07690.11 gi|397781300|ref|YP_006545773.1| - 6.9e-05 21.7 8.7 9.7e-05 21.2 6.0 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily SH3_5 PF08460.5 gi|397781301|ref|YP_006545774.1| - 0.17 11.7 1.2 1.2 9.1 0.0 2.7 3 0 0 3 3 3 0 Bacterial SH3 domain NHL PF01436.16 gi|397781302|ref|YP_006545775.1| - 2.2e-92 298.6 30.7 2.7e-11 42.8 0.0 12.7 12 0 0 12 12 12 12 NHL repeat SGL PF08450.7 gi|397781302|ref|YP_006545775.1| - 1.1e-42 146.1 22.0 0.00023 20.6 0.1 12.0 2 2 9 12 12 12 11 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|397781302|ref|YP_006545775.1| - 2.4e-32 110.3 53.4 0.0023 17.6 0.1 12.9 12 0 0 12 12 12 11 Beta-propeller repeat PKD PF00801.15 gi|397781302|ref|YP_006545775.1| - 1.5e-14 53.4 2.9 3.8e-14 52.1 2.0 1.7 1 0 0 1 1 1 1 PKD domain SdiA-regulated PF06977.6 gi|397781302|ref|YP_006545775.1| - 1.4e-11 43.8 3.8 0.033 13.1 0.0 9.7 6 4 6 12 12 12 2 SdiA-regulated US22 PF02393.11 gi|397781302|ref|YP_006545775.1| - 1.4e-07 31.5 1.6 21 5.1 0.0 8.4 5 3 0 6 6 6 0 US22 like Reg_prop PF07494.6 gi|397781302|ref|YP_006545775.1| - 0.00021 20.9 7.5 88 3.6 0.0 10.5 13 0 0 13 13 13 0 Two component regulator propeller Ldl_recept_b PF00058.12 gi|397781302|ref|YP_006545775.1| - 0.00071 19.8 4.4 79 3.6 0.0 8.0 9 0 0 9 9 9 0 Low-density lipoprotein receptor repeat class B MRJP PF03022.11 gi|397781302|ref|YP_006545775.1| - 0.0048 16.1 0.2 37 3.3 0.0 5.1 4 2 0 5 5 5 0 Major royal jelly protein Dockerin_1 PF00404.13 gi|397781302|ref|YP_006545775.1| - 0.05 13.3 5.6 0.81 9.4 0.0 3.4 3 0 0 3 3 3 0 Dockerin type I repeat EF-hand_1 PF00036.27 gi|397781302|ref|YP_006545775.1| - 1.9 7.9 4.7 55 3.4 0.0 4.1 4 0 0 4 4 4 0 EF hand DUF3821 PF12863.2 gi|397781303|ref|YP_006545776.1| - 3e-15 56.4 0.2 5.2e-12 45.8 0.0 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF3821) PKD PF00801.15 gi|397781304|ref|YP_006545777.1| - 1.9e-17 62.7 5.2 1.9e-17 62.7 3.6 1.9 2 0 0 2 2 2 1 PKD domain A2M_N PF01835.14 gi|397781304|ref|YP_006545777.1| - 0.0016 18.6 0.1 0.0027 17.9 0.0 1.3 1 0 0 1 1 1 1 MG2 domain Dockerin_1 PF00404.13 gi|397781304|ref|YP_006545777.1| - 0.014 15.0 11.1 0.39 10.5 0.9 3.0 3 0 0 3 3 3 0 Dockerin type I repeat gerPA PF10676.4 gi|397781304|ref|YP_006545777.1| - 0.035 13.9 1.0 4.5 7.1 0.0 2.5 2 0 0 2 2 2 0 Spore germination protein gerPA/gerPF FG-GAP PF01839.18 gi|397781304|ref|YP_006545777.1| - 0.19 11.4 6.7 2.5 7.8 0.1 3.3 3 0 0 3 3 3 0 FG-GAP repeat EF-hand_5 PF13202.1 gi|397781304|ref|YP_006545777.1| - 2 7.8 5.2 19 4.7 0.5 2.5 2 0 0 2 2 2 0 EF hand VCBS PF13517.1 gi|397781304|ref|YP_006545777.1| - 4.4 7.7 8.8 4.6 7.6 0.5 3.2 3 1 1 4 4 4 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Peptidase_S8 PF00082.17 gi|397781305|ref|YP_006545778.1| - 1.4e-60 204.8 4.3 2.1e-60 204.2 3.0 1.2 1 0 0 1 1 1 1 Subtilase family TIG PF01833.19 gi|397781305|ref|YP_006545778.1| - 0.037 14.0 0.4 0.14 12.1 0.0 2.3 2 0 0 2 2 2 0 IPT/TIG domain GspH PF12019.3 gi|397781305|ref|YP_006545778.1| - 0.69 10.0 7.2 5.2 7.2 0.0 4.4 4 1 1 5 5 5 0 Type II transport protein GspH Dockerin_1 PF00404.13 gi|397781305|ref|YP_006545778.1| - 8.4 6.2 13.0 1.9 8.3 0.5 3.2 2 0 0 2 2 2 0 Dockerin type I repeat PKD PF00801.15 gi|397781306|ref|YP_006545779.1| - 7.4e-15 54.4 3.9 2.8e-14 52.6 2.7 2.1 1 1 0 1 1 1 1 PKD domain gerPA PF10676.4 gi|397781306|ref|YP_006545779.1| - 0.02 14.6 0.6 2 8.2 0.0 2.5 2 1 0 2 2 2 0 Spore germination protein gerPA/gerPF VCBS PF13517.1 gi|397781306|ref|YP_006545779.1| - 0.71 10.2 5.9 15 6.0 1.5 2.8 2 1 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Dockerin_1 PF00404.13 gi|397781306|ref|YP_006545779.1| - 0.74 9.6 11.6 0.26 11.0 0.9 2.9 3 0 0 3 3 3 0 Dockerin type I repeat Kelch_4 PF13418.1 gi|590000723|ref|YP_009001439.1| - 1.3e-46 156.1 51.4 1.4e-07 31.1 1.2 9.7 8 1 1 9 9 9 9 Galactose oxidase, central domain Kelch_6 PF13964.1 gi|590000723|ref|YP_009001439.1| - 6.9e-32 108.2 20.7 0.0067 16.5 0.1 9.5 9 0 0 9 9 9 9 Kelch motif Kelch_5 PF13854.1 gi|590000723|ref|YP_009001439.1| - 2.4e-30 103.9 23.6 0.00075 19.3 0.1 9.9 10 0 0 10 10 10 9 Kelch motif Kelch_2 PF07646.10 gi|590000723|ref|YP_009001439.1| - 1.2e-26 91.3 39.0 0.00076 19.1 0.9 9.5 9 0 0 9 9 9 9 Kelch motif BNR_2 PF13088.1 gi|590000723|ref|YP_009001439.1| - 6.5e-20 71.5 39.0 6.5e-12 45.3 7.9 4.3 1 1 3 4 4 4 4 BNR repeat-like domain Glyoxal_oxid_N PF07250.6 gi|590000723|ref|YP_009001439.1| - 1.5e-18 66.7 16.6 3.9e-05 22.8 0.1 6.3 1 1 5 7 7 7 7 Glyoxal oxidase N-terminus Kelch_3 PF13415.1 gi|590000723|ref|YP_009001439.1| - 3.2e-17 62.1 57.5 0.0067 16.5 0.3 10.1 10 0 0 10 10 10 7 Galactose oxidase, central domain BNR PF02012.15 gi|590000723|ref|YP_009001439.1| - 3e-14 50.4 71.2 0.071 12.9 1.6 10.5 10 0 0 10 10 9 9 BNR/Asp-box repeat Kelch_1 PF01344.20 gi|590000723|ref|YP_009001439.1| - 8e-14 50.9 11.7 0.32 10.5 0.0 9.0 8 0 0 8 8 8 4 Kelch motif FecR PF04773.8 gi|590000723|ref|YP_009001439.1| - 7.3e-07 29.3 0.1 5.7 7.2 0.0 6.9 4 3 2 7 7 7 1 FecR protein Secretin PF00263.16 gi|590000723|ref|YP_009001439.1| - 7.6e-07 28.6 0.7 2.9 7.2 0.0 6.9 5 2 2 7 7 7 1 Bacterial type II and III secretion system protein DUF4185 PF13810.1 gi|590000723|ref|YP_009001439.1| - 0.0012 17.8 63.8 0.58 8.9 1.3 9.0 4 2 3 9 9 9 8 Domain of unknown function (DUF4185) Lactamase_B PF00753.22 gi|590000723|ref|YP_009001439.1| - 2.5 7.7 6.6 2.2 7.8 0.1 3.4 3 1 1 4 4 4 0 Metallo-beta-lactamase superfamily NHL PF01436.16 gi|590000724|ref|YP_006545780.2| - 1.5e-112 362.2 39.8 6.5e-12 44.7 0.0 13.5 13 0 0 13 13 13 12 NHL repeat PKD PF00801.15 gi|590000724|ref|YP_006545780.2| - 9.5e-54 179.0 41.0 8.6e-17 60.6 1.9 6.3 6 0 0 6 6 6 4 PKD domain SGL PF08450.7 gi|590000724|ref|YP_006545780.2| - 8.5e-35 120.2 23.3 0.0002 20.8 0.0 12.1 2 1 10 12 12 12 12 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|590000724|ref|YP_006545780.2| - 1.7e-20 72.4 54.2 0.016 14.9 0.4 13.0 12 0 0 12 12 12 8 Beta-propeller repeat CarboxypepD_reg PF13620.1 gi|590000724|ref|YP_006545780.2| - 0.0017 18.3 13.8 0.015 15.2 0.1 5.1 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain BatD PF13584.1 gi|590000724|ref|YP_006545780.2| - 0.032 12.8 0.0 0.053 12.1 0.0 1.2 1 0 0 1 1 1 0 Oxygen tolerance GCD14 PF08704.5 gi|590000724|ref|YP_006545780.2| - 0.072 12.5 2.7 27 4.1 0.0 4.6 6 1 1 7 7 7 0 tRNA methyltransferase complex GCD14 subunit Dockerin_1 PF00404.13 gi|590000724|ref|YP_006545780.2| - 0.37 10.5 7.8 5.1 6.9 1.2 3.0 2 0 0 2 2 2 0 Dockerin type I repeat PKD PF00801.15 gi|397781308|ref|YP_006545781.1| - 4.9e-30 103.0 23.9 1.3e-15 56.8 4.0 3.3 3 0 0 3 3 3 2 PKD domain SBBP PF06739.6 gi|397781308|ref|YP_006545781.1| - 3.5e-09 36.2 44.3 0.024 14.3 2.0 8.8 8 0 0 8 8 8 7 Beta-propeller repeat Cohesin PF00963.13 gi|397781309|ref|YP_006545782.1| - 0.0002 21.2 5.5 0.00043 20.1 3.3 1.9 1 1 1 2 2 2 1 Cohesin domain CARDB PF07705.6 gi|397781310|ref|YP_006545783.1| - 4.2e-06 26.7 26.5 0.0092 16.0 0.4 7.0 7 1 0 7 7 7 3 CARDB Thiol-ester_cl PF10569.4 gi|397781310|ref|YP_006545783.1| - 0.0017 17.5 1.1 0.0024 17.0 0.0 1.9 2 0 0 2 2 2 1 Alpha-macro-globulin thiol-ester bond-forming region Prenyltrans_1 PF13243.1 gi|397781310|ref|YP_006545783.1| - 0.027 14.4 4.6 0.88 9.6 0.2 3.5 3 0 0 3 3 3 0 Prenyltransferase-like EF-hand_4 PF12763.2 gi|397781310|ref|YP_006545783.1| - 0.24 11.1 2.1 0.44 10.3 0.7 2.1 2 0 0 2 2 2 0 Cytoskeletal-regulatory complex EF hand Dockerin_1 PF00404.13 gi|397781310|ref|YP_006545783.1| - 4.8 7.0 11.2 3.1 7.6 0.9 3.3 2 0 0 2 2 2 0 Dockerin type I repeat Y_Y_Y PF07495.8 gi|397781311|ref|YP_006545784.1| - 0.032 13.9 0.3 2.9 7.6 0.0 3.3 4 0 0 4 4 4 0 Y_Y_Y domain Cadherin PF00028.12 gi|397781311|ref|YP_006545784.1| - 0.05 13.8 2.2 13 6.1 0.0 4.6 4 1 1 5 5 5 0 Cadherin domain DUF912 PF06024.7 gi|397781311|ref|YP_006545784.1| - 0.061 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) CM1 PF03026.10 gi|397781312|ref|YP_006545785.1| - 0.062 12.3 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Influenza C virus M1 protein ST7 PF04184.7 gi|397781313|ref|YP_006545786.1| - 4e-11 41.8 0.2 4.9e-06 25.0 0.2 2.2 2 0 0 2 2 2 2 ST7 protein TPR_14 PF13428.1 gi|397781313|ref|YP_006545786.1| - 6.1e-07 29.5 8.9 0.0004 20.7 0.0 5.1 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|397781313|ref|YP_006545786.1| - 4.4e-05 23.0 3.5 0.00024 20.7 0.0 4.0 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|397781313|ref|YP_006545786.1| - 7.4e-05 22.3 1.7 0.025 14.2 0.1 3.7 3 2 0 3 3 3 1 TPR repeat TPR_16 PF13432.1 gi|397781313|ref|YP_006545786.1| - 0.00053 20.5 0.2 0.00053 20.5 0.1 4.6 3 2 2 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|397781313|ref|YP_006545786.1| - 0.0013 18.9 4.7 0.022 15.1 0.1 4.2 4 1 0 4 4 4 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|397781313|ref|YP_006545786.1| - 0.0016 18.0 0.1 0.019 14.5 0.0 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|397781313|ref|YP_006545786.1| - 0.0018 17.9 2.6 0.036 13.8 0.0 3.9 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|397781313|ref|YP_006545786.1| - 0.0096 15.6 0.0 0.065 13.0 0.0 2.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|397781313|ref|YP_006545786.1| - 0.011 15.6 6.1 0.047 13.6 0.0 3.7 3 1 2 5 5 5 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|397781313|ref|YP_006545786.1| - 0.026 14.9 0.3 1 9.9 0.0 3.6 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF2264 PF10022.4 gi|397781313|ref|YP_006545786.1| - 0.064 11.8 0.1 0.089 11.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2264) DUF4240 PF14024.1 gi|397781313|ref|YP_006545786.1| - 0.089 12.6 0.1 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4240) Apc3 PF12895.2 gi|397781313|ref|YP_006545786.1| - 0.098 12.8 0.0 0.36 11.0 0.0 2.1 1 1 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 DUF4398 PF14346.1 gi|397781313|ref|YP_006545786.1| - 2.9 7.9 7.6 0.58 10.2 0.6 2.6 2 1 1 3 3 2 0 Domain of unknown function (DUF4398) Cation_efflux PF01545.16 gi|397781314|ref|YP_006545787.1| - 0.046 12.8 0.2 0.054 12.5 0.1 1.0 1 0 0 1 1 1 0 Cation efflux family IncA PF04156.9 gi|397781314|ref|YP_006545787.1| - 0.18 11.3 0.2 0.18 11.4 0.2 1.1 1 0 0 1 1 1 0 IncA protein FixQ PF05545.6 gi|397781314|ref|YP_006545787.1| - 4.7 6.9 6.5 0.76 9.4 1.0 2.0 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ ABC_tran PF00005.22 gi|397781316|ref|YP_006545789.1| - 8.5e-28 97.3 0.0 1.2e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397781316|ref|YP_006545789.1| - 1.3e-13 51.6 0.1 8.4e-10 39.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|397781316|ref|YP_006545789.1| - 0.00071 18.7 0.0 0.002 17.2 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain DUF4162 PF13732.1 gi|397781316|ref|YP_006545789.1| - 0.011 16.2 0.0 0.02 15.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|397781316|ref|YP_006545789.1| - 0.015 15.6 0.0 0.018 15.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|397781316|ref|YP_006545789.1| - 0.028 13.9 0.2 0.055 12.9 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|397781316|ref|YP_006545789.1| - 0.13 11.5 0.0 13 4.9 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|397781316|ref|YP_006545789.1| - 0.13 12.2 0.0 0.25 11.2 0.0 1.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC2_membrane_2 PF12679.2 gi|397781317|ref|YP_006545790.1| - 1.1e-47 162.2 7.5 1.3e-47 162.0 5.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|397781317|ref|YP_006545790.1| - 1.3e-18 66.9 5.9 1.3e-18 66.9 4.1 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|397781317|ref|YP_006545790.1| - 5.4e-08 32.2 14.5 4.7e-07 29.1 9.2 2.3 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|397781317|ref|YP_006545790.1| - 4.4e-06 26.1 12.8 4.4e-06 26.1 8.9 2.3 3 0 0 3 3 3 1 ABC-2 family transporter protein Oxidored-like PF09791.4 gi|397781317|ref|YP_006545790.1| - 0.19 11.2 1.2 7.2 6.1 0.2 2.4 2 0 0 2 2 2 0 Oxidoreductase-like protein, N-terminal YqhR PF11085.3 gi|397781317|ref|YP_006545790.1| - 0.44 10.0 5.8 0.99 8.9 4.0 1.6 1 0 0 1 1 1 0 Conserved membrane protein YqhR NPCBM_assoc PF10633.4 gi|397781318|ref|YP_006545791.1| - 1.4e-27 95.4 5.6 4.9e-21 74.5 0.9 4.6 5 0 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.1 gi|397781318|ref|YP_006545791.1| - 4.4e-13 49.0 1.1 4.4e-13 49.0 0.8 2.4 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|397781318|ref|YP_006545791.1| - 8.3e-06 25.7 0.1 1.9e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|397781318|ref|YP_006545791.1| - 2.5e-05 23.9 0.0 0.00013 21.6 0.0 2.3 2 0 0 2 2 2 1 PEGA domain CARDB PF07705.6 gi|397781318|ref|YP_006545791.1| - 2.8e-05 24.0 0.7 0.013 15.5 0.0 3.5 3 1 0 3 3 3 1 CARDB Transglut_N PF00868.15 gi|397781318|ref|YP_006545791.1| - 0.00012 22.1 0.0 0.91 9.5 0.0 3.4 2 1 1 3 3 3 2 Transglutaminase family FixG_C PF11614.3 gi|397781318|ref|YP_006545791.1| - 0.0074 16.3 0.0 6 6.9 0.0 3.5 4 0 0 4 4 4 1 IG-like fold at C-terminal of FixG, putative oxidoreductase Big_1 PF02369.11 gi|397781318|ref|YP_006545791.1| - 0.043 13.7 0.4 0.12 12.3 0.3 1.8 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) DUF11 PF01345.13 gi|397781318|ref|YP_006545791.1| - 0.78 9.8 9.1 9.9 6.2 0.1 3.9 4 1 2 6 6 6 0 Domain of unknown function DUF11 PAS_9 PF13426.1 gi|397781319|ref|YP_006545792.1| - 1e-29 102.9 0.0 1.8e-10 41.0 0.0 4.1 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|397781319|ref|YP_006545792.1| - 1.1e-24 86.3 0.0 3.1e-08 33.3 0.0 4.8 5 0 0 5 5 5 3 PAS fold Response_reg PF00072.19 gi|397781319|ref|YP_006545792.1| - 5.2e-22 77.9 0.0 1.3e-21 76.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.6 gi|397781319|ref|YP_006545792.1| - 1.3e-21 76.5 0.2 4.3e-12 45.9 0.0 3.9 3 1 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|397781319|ref|YP_006545792.1| - 7.7e-19 67.7 1.0 6.9e-09 35.7 0.0 4.1 3 1 1 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|397781319|ref|YP_006545792.1| - 7e-16 57.9 0.1 1.4e-15 56.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|397781319|ref|YP_006545792.1| - 2.3e-10 40.7 0.1 1e-09 38.7 0.0 2.1 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|397781319|ref|YP_006545792.1| - 1.2e-09 38.3 0.2 3.6e-09 36.7 0.0 1.9 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|397781319|ref|YP_006545792.1| - 8e-09 35.0 0.0 0.047 13.5 0.0 3.9 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.1 gi|397781319|ref|YP_006545792.1| - 1.7e-07 31.8 0.1 8.5e-07 29.5 0.0 2.2 2 0 0 2 2 1 1 GAF domain HisKA PF00512.20 gi|397781319|ref|YP_006545792.1| - 0.00013 21.8 2.8 0.00015 21.6 0.1 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|397781319|ref|YP_006545792.1| - 0.0061 16.2 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|397781319|ref|YP_006545792.1| - 0.016 14.9 0.0 0.04 13.7 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain SPOB_a PF14689.1 gi|397781319|ref|YP_006545792.1| - 0.027 14.0 0.1 0.07 12.7 0.0 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PIN PF01850.16 gi|397781320|ref|YP_006545793.1| - 0.00025 21.3 0.2 0.00051 20.3 0.1 1.7 1 1 0 1 1 1 1 PIN domain ThiF PF00899.16 gi|397781322|ref|YP_006545795.1| - 9.8e-44 148.4 0.8 1.3e-43 148.0 0.5 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|397781322|ref|YP_006545795.1| - 1.4e-19 69.4 0.0 2.2e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain ApbA PF02558.11 gi|397781322|ref|YP_006545795.1| - 0.0027 17.1 0.4 0.0039 16.6 0.2 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|397781322|ref|YP_006545795.1| - 0.0086 16.1 0.1 0.013 15.5 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|397781322|ref|YP_006545795.1| - 0.1 12.2 0.5 0.16 11.6 0.3 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|397781322|ref|YP_006545795.1| - 2.1 7.1 9.0 0.73 8.6 3.0 2.2 1 1 2 3 3 3 0 FAD dependent oxidoreductase ThiS PF02597.15 gi|397781323|ref|YP_006545796.1| - 3.1e-15 56.3 0.1 3.6e-15 56.1 0.1 1.0 1 0 0 1 1 1 1 ThiS family SLBB PF10531.4 gi|397781323|ref|YP_006545796.1| - 0.11 12.4 0.0 0.34 10.8 0.0 1.8 2 0 0 2 2 2 0 SLBB domain MoaE PF02391.12 gi|397781324|ref|YP_006545797.1| - 3.8e-31 107.2 0.2 4.4e-31 107.0 0.2 1.1 1 0 0 1 1 1 1 MoaE protein YcaO PF02624.11 gi|397781325|ref|YP_006545798.1| - 1.9e-97 326.7 2.8 2.7e-97 326.2 1.3 1.6 2 0 0 2 2 2 1 YcaO-like family TfuA PF07812.7 gi|397781326|ref|YP_006545799.1| - 8e-47 157.6 0.1 1.3e-46 156.9 0.1 1.3 1 0 0 1 1 1 1 TfuA-like protein TAT_signal PF10518.4 gi|397781327|ref|YP_006545800.1| - 4.9 7.4 6.6 3 8.0 3.1 1.8 1 1 1 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence HTH_5 PF01022.15 gi|397781330|ref|YP_006545803.1| - 3.4e-09 36.2 0.2 7.6e-09 35.1 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|397781330|ref|YP_006545803.1| - 2.7e-06 27.0 0.4 4.8e-06 26.2 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|397781330|ref|YP_006545803.1| - 7.1e-06 25.6 0.1 1e-05 25.0 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|397781330|ref|YP_006545803.1| - 2.8e-05 23.4 0.3 0.0001 21.6 0.2 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|397781330|ref|YP_006545803.1| - 0.00018 21.3 0.0 0.00027 20.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|397781330|ref|YP_006545803.1| - 0.00031 20.3 0.3 0.00062 19.3 0.1 1.6 1 1 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|397781330|ref|YP_006545803.1| - 0.001 18.6 0.1 0.0021 17.6 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|397781330|ref|YP_006545803.1| - 0.0022 17.9 0.3 0.0039 17.1 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|397781330|ref|YP_006545803.1| - 0.0023 17.4 0.7 0.0067 16.0 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|397781330|ref|YP_006545803.1| - 0.018 15.2 0.1 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.7 gi|397781330|ref|YP_006545803.1| - 0.023 14.3 0.2 0.049 13.2 0.1 1.6 1 0 0 1 1 1 0 HTH domain MarR PF01047.17 gi|397781330|ref|YP_006545803.1| - 0.039 13.6 0.0 0.064 12.9 0.0 1.4 1 0 0 1 1 1 0 MarR family FaeA PF04703.7 gi|397781330|ref|YP_006545803.1| - 0.041 14.0 0.1 0.068 13.3 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_CodY PF08222.6 gi|397781330|ref|YP_006545803.1| - 0.069 12.4 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain GntR PF00392.16 gi|397781330|ref|YP_006545803.1| - 0.095 12.1 0.1 0.16 11.4 0.1 1.4 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family TauE PF01925.14 gi|397781331|ref|YP_006545804.1| - 0.0022 17.5 1.2 0.0023 17.4 0.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Tetraspannin PF00335.15 gi|397781331|ref|YP_006545804.1| - 0.012 14.9 0.1 0.012 14.8 0.1 1.1 1 0 0 1 1 1 0 Tetraspanin family BacA PF02673.13 gi|397781331|ref|YP_006545804.1| - 0.013 14.6 1.0 0.015 14.5 0.7 1.0 1 0 0 1 1 1 0 Bacitracin resistance protein BacA Halogen_Hydrol PF10112.4 gi|397781331|ref|YP_006545804.1| - 0.038 13.3 0.7 0.048 13.0 0.5 1.2 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein GMP_synt_C PF00958.17 gi|397781331|ref|YP_006545804.1| - 0.045 13.4 0.1 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 GMP synthase C terminal domain UPF0016 PF01169.14 gi|397781331|ref|YP_006545804.1| - 0.1 12.7 4.5 0.16 12.1 3.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein family UPF0016 Wzy_C PF04932.10 gi|397781331|ref|YP_006545804.1| - 0.2 11.4 1.9 0.22 11.2 1.3 1.2 1 0 0 1 1 1 0 O-Antigen ligase PspB PF06667.7 gi|397781331|ref|YP_006545804.1| - 0.24 11.3 3.7 0.4 10.6 2.6 1.4 1 1 0 1 1 1 0 Phage shock protein B DUF21 PF01595.15 gi|397781331|ref|YP_006545804.1| - 0.29 10.3 4.6 0.42 9.8 3.2 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF21 7tm_7 PF08395.7 gi|397781331|ref|YP_006545804.1| - 0.8 8.6 3.3 1.1 8.2 2.3 1.4 1 1 0 1 1 1 0 7tm Chemosensory receptor SIT PF15330.1 gi|397781331|ref|YP_006545804.1| - 4 7.6 5.3 1 9.4 0.2 2.0 2 0 0 2 2 2 0 SHP2-interacting transmembrane adaptor protein, SIT RuBisCO_large PF00016.15 gi|397781332|ref|YP_006545805.1| - 4.7e-77 258.8 4.0 5.9e-77 258.5 2.8 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|397781332|ref|YP_006545805.1| - 2.7e-24 85.2 0.0 8.4e-24 83.6 0.0 1.9 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain PG_binding_2 PF08823.6 gi|397781332|ref|YP_006545805.1| - 0.49 10.5 4.1 16 5.6 0.1 3.3 3 1 1 4 4 4 0 Putative peptidoglycan binding domain Rubrerythrin PF02915.12 gi|397781334|ref|YP_006545807.1| - 7.7e-18 65.1 3.6 1e-17 64.7 2.5 1.2 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|397781334|ref|YP_006545807.1| - 9.7e-08 32.2 1.8 1.4e-05 25.2 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) Ferritin_2 PF13668.1 gi|397781334|ref|YP_006545807.1| - 4.3e-06 26.7 2.8 5.4e-05 23.1 1.8 2.0 1 1 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.7 gi|397781334|ref|YP_006545807.1| - 0.0044 16.8 2.0 0.28 10.9 0.2 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF892) CEP19 PF14933.1 gi|397781334|ref|YP_006545807.1| - 0.093 13.0 0.5 5.9 7.1 0.0 2.1 1 1 1 2 2 2 0 CEP19-like protein Repressor_Mnt PF11423.3 gi|397781334|ref|YP_006545807.1| - 0.83 9.0 0.0 0.83 9.0 0.0 2.4 3 0 0 3 3 3 0 Regulatory protein Mnt PAS_9 PF13426.1 gi|397781335|ref|YP_006545808.1| - 7.2e-40 135.5 0.0 1.2e-09 38.5 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|397781335|ref|YP_006545808.1| - 6.7e-37 125.7 0.0 8.1e-14 51.3 0.0 4.5 4 1 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|397781335|ref|YP_006545808.1| - 2.5e-33 114.4 1.4 1.2e-07 31.7 0.1 4.4 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|397781335|ref|YP_006545808.1| - 9e-27 91.9 0.5 1.2e-09 37.6 0.0 4.6 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|397781335|ref|YP_006545808.1| - 2e-25 88.7 0.0 4.6e-16 58.6 0.0 3.7 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.2 gi|397781335|ref|YP_006545808.1| - 9.1e-06 25.6 0.1 0.00016 21.6 0.0 3.0 3 0 0 3 3 3 1 PAS fold HisKA PF00512.20 gi|397781335|ref|YP_006545808.1| - 7.1e-05 22.7 0.3 7.1e-05 22.7 0.2 3.5 4 1 0 4 4 4 1 His Kinase A (phospho-acceptor) domain MEKHLA PF08670.6 gi|397781335|ref|YP_006545808.1| - 0.15 11.5 0.0 0.64 9.5 0.0 2.0 2 0 0 2 2 2 0 MEKHLA domain Phosphorylase PF00343.15 gi|397781336|ref|YP_006545809.1| - 1.1e-22 79.7 0.0 6.2e-17 60.7 0.0 3.9 4 0 0 4 4 4 4 Carbohydrate phosphorylase YHS PF04945.8 gi|397781336|ref|YP_006545809.1| - 1.8e-10 40.5 0.0 3.4e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 YHS domain E1-E2_ATPase PF00122.15 gi|397781337|ref|YP_006545810.1| - 1.3e-65 220.6 5.7 1.3e-65 220.6 3.9 2.5 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|397781337|ref|YP_006545810.1| - 1.2e-30 107.5 1.8 2.3e-30 106.6 1.3 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|397781337|ref|YP_006545810.1| - 8.7e-17 61.9 0.0 1.7e-16 60.9 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|397781337|ref|YP_006545810.1| - 7.5e-15 54.1 1.2 1.1e-14 53.6 0.0 2.0 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|397781337|ref|YP_006545810.1| - 1e-05 25.2 0.1 0.00038 20.1 0.1 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase NUDIX PF00293.23 gi|397781337|ref|YP_006545810.1| - 0.027 14.1 0.0 0.076 12.6 0.0 1.7 1 1 0 1 1 1 0 NUDIX domain PPDK_N PF01326.14 gi|397781338|ref|YP_006545811.1| - 5.2e-90 301.8 0.0 1.1e-89 300.7 0.0 1.5 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|397781338|ref|YP_006545811.1| - 6.9e-58 195.8 0.0 1.1e-57 195.2 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|397781338|ref|YP_006545811.1| - 3.4e-24 84.1 0.2 8.4e-24 82.9 0.2 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain 2-Hacid_dh_C PF02826.14 gi|397781339|ref|YP_006545812.1| - 8.1e-53 178.1 0.0 1.2e-52 177.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|397781339|ref|YP_006545812.1| - 1.7e-33 114.8 0.0 2.1e-33 114.6 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|397781339|ref|YP_006545812.1| - 7.2e-09 35.6 0.0 1.4e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|397781339|ref|YP_006545812.1| - 1.2e-05 25.6 0.0 0.00015 22.1 0.0 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|397781339|ref|YP_006545812.1| - 0.0015 18.3 0.0 0.019 14.8 0.0 2.1 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|397781339|ref|YP_006545812.1| - 0.015 15.0 0.3 4.9 6.8 0.1 3.1 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|397781339|ref|YP_006545812.1| - 0.018 14.4 0.0 0.034 13.5 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|397781339|ref|YP_006545812.1| - 0.027 14.1 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|397781339|ref|YP_006545812.1| - 0.034 14.4 0.1 0.14 12.4 0.0 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_10 PF13460.1 gi|397781339|ref|YP_006545812.1| - 0.042 13.8 0.1 0.085 12.8 0.1 1.7 1 1 0 1 1 1 0 NADH(P)-binding GFO_IDH_MocA PF01408.17 gi|397781339|ref|YP_006545812.1| - 0.072 13.6 0.0 0.21 12.1 0.0 1.8 2 0 0 2 2 1 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.15 gi|397781340|ref|YP_006545813.1| - 2.1e-55 186.4 0.3 2.8e-55 186.0 0.2 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|397781340|ref|YP_006545813.1| - 2.7e-51 173.5 0.0 2.3e-50 170.4 0.0 2.1 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|397781340|ref|YP_006545813.1| - 0.016 15.6 0.0 0.068 13.5 0.0 2.1 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|397781340|ref|YP_006545813.1| - 0.1 13.1 0.0 1 9.8 0.0 2.4 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NTP_transf_2 PF01909.18 gi|397781342|ref|YP_006545815.1| - 2.6e-08 34.0 0.0 7.5e-08 32.5 0.0 1.7 2 0 0 2 2 2 1 Nucleotidyltransferase domain MarR_2 PF12802.2 gi|397781342|ref|YP_006545815.1| - 0.00081 19.0 0.1 0.0021 17.6 0.1 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|397781342|ref|YP_006545815.1| - 0.019 14.6 0.0 0.038 13.7 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.1 gi|397781342|ref|YP_006545815.1| - 0.1 12.1 0.0 19 4.9 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|397781342|ref|YP_006545815.1| - 0.11 12.8 0.1 0.64 10.3 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HEPN PF05168.9 gi|397781343|ref|YP_006545816.1| - 2.5e-11 43.4 0.1 2.7e-11 43.3 0.1 1.1 1 0 0 1 1 1 1 HEPN domain DUF4398 PF14346.1 gi|397781343|ref|YP_006545816.1| - 0.033 14.2 0.0 0.043 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) Big_2 PF02368.13 gi|397781344|ref|YP_006545817.1| - 5.8e-131 426.6 196.6 7.1e-15 54.6 5.7 17.6 18 0 0 18 18 18 11 Bacterial Ig-like domain (group 2) LRR_4 PF12799.2 gi|397781344|ref|YP_006545817.1| - 8.5e-90 293.3 56.6 6.2e-15 54.4 1.9 8.9 6 1 3 9 9 9 9 Leucine Rich repeats (2 copies) NHL PF01436.16 gi|397781344|ref|YP_006545817.1| - 2.9e-53 175.2 7.9 7.5e-11 41.4 0.1 7.5 6 0 0 6 6 6 6 NHL repeat LRR_8 PF13855.1 gi|397781344|ref|YP_006545817.1| - 2e-33 113.9 45.0 2.4e-07 30.3 3.2 6.6 2 2 4 7 7 7 7 Leucine rich repeat SGL PF08450.7 gi|397781344|ref|YP_006545817.1| - 2e-20 73.2 13.3 8e-11 41.7 1.6 5.9 4 1 1 5 5 5 4 SMP-30/Gluconolaconase/LRE-like region LRR_6 PF13516.1 gi|397781344|ref|YP_006545817.1| - 5.6e-19 66.0 52.9 0.25 11.5 0.1 15.8 12 2 3 15 15 15 8 Leucine Rich repeat LRR_1 PF00560.28 gi|397781344|ref|YP_006545817.1| - 1.6e-15 54.7 56.4 0.17 12.0 0.2 15.6 15 0 0 15 15 15 7 Leucine Rich Repeat PKD PF00801.15 gi|397781344|ref|YP_006545817.1| - 3.1e-15 55.6 5.5 3.1e-15 55.6 3.8 12.2 12 1 1 13 13 12 1 PKD domain SBBP PF06739.6 gi|397781344|ref|YP_006545817.1| - 3e-09 36.4 17.8 0.096 12.4 0.0 7.5 6 0 0 6 6 6 3 Beta-propeller repeat LRR_9 PF14580.1 gi|397781344|ref|YP_006545817.1| - 3.8e-09 36.3 13.6 0.00052 19.6 0.5 4.9 2 1 3 5 5 5 2 Leucine-rich repeat DUF3244 PF11589.3 gi|397781344|ref|YP_006545817.1| - 5.5e-05 22.8 0.5 1.1 9.0 0.0 4.1 3 0 0 3 3 3 1 Domain of unknown function (DUF3244) YdfZ PF14001.1 gi|397781344|ref|YP_006545817.1| - 0.00014 22.0 0.2 6 7.2 0.0 4.8 5 0 0 5 5 5 1 YdfZ protein LRR_7 PF13504.1 gi|397781344|ref|YP_006545817.1| - 0.00034 20.3 49.2 6.8 7.3 0.1 13.7 15 0 0 15 15 13 2 Leucine rich repeat CP_ATPgrasp_1 PF04174.8 gi|397781344|ref|YP_006545817.1| - 2.7 6.5 5.9 16 4.0 0.1 3.1 3 0 0 3 3 3 0 A circularly permuted ATPgrasp His_Phos_1 PF00300.17 gi|397781345|ref|YP_006545818.1| - 6.1e-41 140.1 0.0 7.6e-41 139.8 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) PGK PF00162.14 gi|397781346|ref|YP_006545819.1| - 3.3e-146 486.7 0.0 3.8e-146 486.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase PFK PF00365.15 gi|397781347|ref|YP_006545820.1| - 8.6e-99 330.0 2.5 9.9e-99 329.8 1.7 1.0 1 0 0 1 1 1 1 Phosphofructokinase ABC_tran PF00005.22 gi|397781348|ref|YP_006545821.1| - 3.2e-26 92.2 0.0 5.5e-26 91.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397781348|ref|YP_006545821.1| - 3.4e-16 60.0 0.0 6.2e-11 42.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|397781348|ref|YP_006545821.1| - 0.00034 19.7 0.0 0.0014 17.7 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.17 gi|397781348|ref|YP_006545821.1| - 0.00061 19.2 0.0 0.0017 17.8 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_13 PF13166.1 gi|397781348|ref|YP_006545821.1| - 0.015 13.8 0.1 1.8 6.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|397781348|ref|YP_006545821.1| - 0.018 15.3 0.4 0.041 14.1 0.3 1.5 1 0 0 1 1 1 0 AAA domain DUF4162 PF13732.1 gi|397781348|ref|YP_006545821.1| - 0.039 14.4 0.0 0.078 13.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|397781348|ref|YP_006545821.1| - 0.043 13.2 0.3 1.3 8.4 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain SMC_N PF02463.14 gi|397781348|ref|YP_006545821.1| - 0.056 12.6 0.3 0.35 10.0 0.2 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|397781348|ref|YP_006545821.1| - 0.056 13.6 0.6 0.43 10.7 0.4 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|397781348|ref|YP_006545821.1| - 0.082 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|397781348|ref|YP_006545821.1| - 0.086 12.9 0.5 0.76 9.9 0.3 2.2 1 1 1 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|397781348|ref|YP_006545821.1| - 0.095 12.2 0.1 0.2 11.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain GTP_EFTU PF00009.22 gi|397781348|ref|YP_006545821.1| - 0.12 11.7 0.3 0.24 10.7 0.0 1.6 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_33 PF13671.1 gi|397781348|ref|YP_006545821.1| - 0.13 12.0 0.3 0.24 11.2 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|397781348|ref|YP_006545821.1| - 0.23 11.4 1.3 1.6 8.6 0.5 2.3 1 1 0 1 1 1 0 AAA ATPase domain ABC2_membrane PF01061.19 gi|397781349|ref|YP_006545822.1| - 9e-26 90.3 17.0 1.3e-25 89.8 11.8 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|397781349|ref|YP_006545822.1| - 3.3e-09 36.2 17.8 3.3e-09 36.2 12.4 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|397781349|ref|YP_006545822.1| - 0.0069 15.2 22.6 0.0054 15.6 11.9 2.2 1 1 0 2 2 2 1 ABC-2 family transporter protein Trp_oprn_chp PF09534.5 gi|397781349|ref|YP_006545822.1| - 2.1 7.8 8.9 2.2 7.8 2.4 2.2 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) bPH_2 PF03703.9 gi|397781350|ref|YP_006545823.1| - 3.7e-20 71.7 0.1 5.1e-20 71.2 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain FtsX PF02687.16 gi|397781350|ref|YP_006545823.1| - 0.15 11.8 1.6 0.22 11.2 1.1 1.2 1 0 0 1 1 1 0 FtsX-like permease family bPH_4 PF06713.6 gi|397781350|ref|YP_006545823.1| - 0.16 11.8 0.6 0.27 11.1 0.0 1.8 2 1 0 2 2 2 0 Bacterial PH domain bPH_2 PF03703.9 gi|397781351|ref|YP_006545824.1| - 7.9e-21 73.8 1.8 1.1e-07 31.7 0.0 3.4 3 0 0 3 3 3 3 Bacterial PH domain DUF4131 PF13567.1 gi|397781351|ref|YP_006545824.1| - 0.56 9.5 4.4 1 8.7 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF1673 PF07895.6 gi|397781351|ref|YP_006545824.1| - 0.58 9.6 6.9 0.24 10.8 0.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1673) Wzy_C PF04932.10 gi|397781351|ref|YP_006545824.1| - 6.6 6.4 9.2 1 9.1 1.6 2.4 2 1 0 2 2 2 0 O-Antigen ligase Pyridox_oxidase PF01243.15 gi|397781352|ref|YP_006545825.1| - 6e-09 35.8 0.0 8.5e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase C1_1 PF00130.17 gi|397781354|ref|YP_006545827.1| - 0.0021 17.7 2.5 0.0025 17.5 1.8 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) FYDLN_acid PF09538.5 gi|397781354|ref|YP_006545827.1| - 0.035 14.6 1.3 0.039 14.5 0.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-RING_4 PF14570.1 gi|397781354|ref|YP_006545827.1| - 0.041 13.4 3.8 0.097 12.2 2.6 1.7 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-CHY PF05495.7 gi|397781354|ref|YP_006545827.1| - 0.041 14.0 2.3 0.058 13.5 1.6 1.3 1 1 0 1 1 1 0 CHY zinc finger DZR PF12773.2 gi|397781354|ref|YP_006545827.1| - 0.11 12.3 5.5 0.34 10.7 3.8 1.7 1 1 0 1 1 1 0 Double zinc ribbon UPF0167 PF03691.9 gi|397781354|ref|YP_006545827.1| - 0.12 11.7 2.6 0.12 11.7 1.8 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0167) OrfB_Zn_ribbon PF07282.6 gi|397781354|ref|YP_006545827.1| - 0.13 11.9 3.0 1.1 8.9 1.2 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain ADK_lid PF05191.9 gi|397781354|ref|YP_006545827.1| - 0.17 11.5 1.5 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.7 gi|397781354|ref|YP_006545827.1| - 0.19 11.0 4.7 3.7 6.9 0.5 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding Cas_CXXC_CXXC PF09706.5 gi|397781354|ref|YP_006545827.1| - 0.22 11.7 2.3 5.8 7.1 0.3 2.1 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) Prok-RING_1 PF14446.1 gi|397781354|ref|YP_006545827.1| - 0.38 10.5 6.2 3.8 7.3 4.3 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Lar_restr_allev PF14354.1 gi|397781354|ref|YP_006545827.1| - 0.6 10.4 4.6 0.76 10.1 3.2 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-C2H2_4 PF13894.1 gi|397781354|ref|YP_006545827.1| - 0.63 10.5 4.0 7.2 7.1 0.4 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|397781354|ref|YP_006545827.1| - 0.77 9.7 5.8 2.4 8.1 4.0 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|397781354|ref|YP_006545827.1| - 0.92 9.0 4.1 1.3 8.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|397781354|ref|YP_006545827.1| - 0.92 9.5 5.1 1.9 8.5 0.4 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-nanos PF05741.8 gi|397781354|ref|YP_006545827.1| - 1.1 9.2 4.0 6.6 6.7 0.3 2.2 1 1 1 2 2 2 0 Nanos RNA binding domain PHD PF00628.24 gi|397781354|ref|YP_006545827.1| - 1.3 8.7 8.4 9.5 6.0 1.0 2.2 1 1 1 2 2 2 0 PHD-finger zf-H2C2_2 PF13465.1 gi|397781354|ref|YP_006545827.1| - 1.4 9.3 4.0 3.6 8.0 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain adh_short PF00106.20 gi|397781355|ref|YP_006545828.1| - 5.7e-20 71.9 3.0 1.1e-19 70.9 0.6 2.0 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|397781355|ref|YP_006545828.1| - 4.1e-09 36.3 0.6 8.7e-09 35.2 0.4 1.5 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|397781355|ref|YP_006545828.1| - 2e-07 31.0 0.0 4e-07 30.0 0.0 1.5 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase HEM4 PF02602.10 gi|397781355|ref|YP_006545828.1| - 5.2e-05 22.5 1.1 9.8e-05 21.7 0.3 1.7 2 0 0 2 2 2 1 Uroporphyrinogen-III synthase HemD Epimerase PF01370.16 gi|397781355|ref|YP_006545828.1| - 0.00018 21.0 0.0 0.00022 20.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|397781355|ref|YP_006545828.1| - 0.028 14.4 0.1 0.046 13.7 0.1 1.5 1 0 0 1 1 1 0 NADH(P)-binding Glycos_transf_2 PF00535.21 gi|397781355|ref|YP_006545828.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 Herpes_UL33 PF03581.8 gi|397781355|ref|YP_006545828.1| - 0.16 11.8 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus UL33-like protein AMP-binding PF00501.23 gi|397781356|ref|YP_006545829.1| - 8.2e-90 301.1 0.0 9.8e-90 300.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|397781356|ref|YP_006545829.1| - 1e-18 68.0 0.2 1.9e-18 67.1 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain GATase PF00117.23 gi|397781357|ref|YP_006545830.1| - 5.3e-31 107.5 0.0 6e-31 107.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|397781357|ref|YP_006545830.1| - 3e-06 26.9 0.1 4.9e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|397781357|ref|YP_006545830.1| - 8.6e-05 22.0 0.1 0.026 13.9 0.0 2.5 3 0 0 3 3 3 2 Peptidase C26 SNO PF01174.14 gi|397781357|ref|YP_006545830.1| - 0.00037 20.1 0.0 0.0049 16.5 0.0 2.0 2 0 0 2 2 2 1 SNO glutamine amidotransferase family PAPS_reduct PF01507.14 gi|397781358|ref|YP_006545831.1| - 2.4e-45 154.4 0.0 3.2e-45 154.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.15 gi|397781358|ref|YP_006545831.1| - 9e-17 60.5 0.2 1.5e-16 59.8 0.2 1.3 1 0 0 1 1 1 1 PUA domain MnhB PF04039.8 gi|397781359|ref|YP_006545832.1| - 2.4e-13 50.2 14.7 4.5e-13 49.3 10.2 1.4 1 1 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Cytochrom_B_N PF00033.14 gi|397781359|ref|YP_006545832.1| - 0.33 10.2 6.9 0.55 9.5 4.7 1.6 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Herpes_US9 PF06072.6 gi|397781359|ref|YP_006545832.1| - 0.77 9.6 3.4 0.83 9.5 0.3 2.3 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 DUF2273 PF10031.4 gi|397781359|ref|YP_006545832.1| - 1.3 8.6 7.9 2.9 7.5 1.2 2.8 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) DUF2116 PF09889.4 gi|397781359|ref|YP_006545832.1| - 1.4 8.7 5.4 0.5 10.2 0.5 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Claudin_2 PF13903.1 gi|397781359|ref|YP_006545832.1| - 1.6 8.3 5.7 0.31 10.7 0.9 1.8 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF805 PF05656.9 gi|397781359|ref|YP_006545832.1| - 3.4 7.5 5.4 0.81 9.5 1.6 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF805) FeoB_C PF07664.7 gi|397781359|ref|YP_006545832.1| - 3.5 7.1 9.6 2.1 7.7 1.2 2.8 2 1 0 2 2 2 0 Ferrous iron transport protein B C terminus TFIIS_C PF01096.13 gi|397781362|ref|YP_006545834.1| - 6.7e-15 54.4 8.1 6.7e-15 54.4 5.6 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|397781362|ref|YP_006545834.1| - 4.1e-07 29.5 2.5 4.1e-07 29.5 1.7 2.8 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|397781362|ref|YP_006545834.1| - 3.3e-05 23.5 11.4 0.0033 17.1 2.3 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|397781362|ref|YP_006545834.1| - 0.0064 16.1 10.3 0.14 11.7 0.4 2.5 1 1 0 2 2 2 2 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.1 gi|397781362|ref|YP_006545834.1| - 0.011 15.2 1.4 0.37 10.3 0.2 4.2 4 0 0 4 4 4 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|397781362|ref|YP_006545834.1| - 0.015 15.0 0.3 0.015 15.0 0.2 2.7 2 1 0 2 2 2 0 zinc-ribbons FUR PF01475.14 gi|397781362|ref|YP_006545834.1| - 0.027 14.4 0.4 0.2 11.5 0.1 2.2 2 1 0 2 2 2 0 Ferric uptake regulator family DZR PF12773.2 gi|397781362|ref|YP_006545834.1| - 0.073 12.9 0.6 0.073 12.9 0.4 2.9 2 1 0 2 2 2 0 Double zinc ribbon DUF2387 PF09526.5 gi|397781362|ref|YP_006545834.1| - 0.11 12.4 11.9 0.14 12.0 1.0 2.9 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) Mcm10 PF09332.6 gi|397781362|ref|YP_006545834.1| - 0.12 11.6 2.2 1 8.6 0.6 2.1 2 0 0 2 2 2 0 Mcm10 replication factor zf-ribbon_3 PF13248.1 gi|397781362|ref|YP_006545834.1| - 0.24 10.6 17.0 0.063 12.5 1.9 3.5 3 1 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|397781362|ref|YP_006545834.1| - 0.31 10.4 18.0 0.18 11.1 0.4 4.1 3 2 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|397781362|ref|YP_006545834.1| - 0.36 10.5 19.4 0.44 10.2 0.4 4.2 4 0 0 4 4 4 0 zinc-ribbon domain Baculo_LEF5_C PF11792.3 gi|397781362|ref|YP_006545834.1| - 0.46 9.9 0.1 0.46 9.9 0.1 3.1 4 0 0 4 4 4 0 Baculoviridae late expression factor 5 C-terminal domain PhnA_Zn_Ribbon PF08274.7 gi|397781362|ref|YP_006545834.1| - 0.7 9.7 7.9 2.4 8.0 0.4 3.2 3 1 0 3 3 3 0 PhnA Zinc-Ribbon Ogr_Delta PF04606.7 gi|397781362|ref|YP_006545834.1| - 0.75 9.4 8.7 2.9 7.6 1.6 3.1 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger DNA_RNApol_7kD PF03604.8 gi|397781362|ref|YP_006545834.1| - 1.7 8.1 12.7 0.36 10.3 1.2 3.3 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit IBR PF01485.16 gi|397781362|ref|YP_006545834.1| - 2.1 8.3 13.2 1.8 8.4 0.8 2.8 2 1 0 2 2 2 0 IBR domain zf-TFIIB PF13453.1 gi|397781362|ref|YP_006545834.1| - 3.9 6.7 15.4 3.8 6.7 0.0 3.4 2 2 1 3 3 3 0 Transcription factor zinc-finger Prok-RING_1 PF14446.1 gi|397781362|ref|YP_006545834.1| - 4.1 7.2 9.8 6.3 6.6 0.3 3.2 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Rubredoxin PF00301.15 gi|397781362|ref|YP_006545834.1| - 5.2 7.0 13.2 4 7.4 0.0 4.0 4 0 0 4 4 4 0 Rubredoxin zf-ISL3 PF14690.1 gi|397781362|ref|YP_006545834.1| - 7.1 6.7 13.2 72 3.5 0.2 4.1 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.1 gi|397781362|ref|YP_006545834.1| - 8.1 6.2 11.7 27 4.5 0.1 4.0 4 0 0 4 4 4 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|397781362|ref|YP_006545834.1| - 8.6 5.9 19.9 6.1 6.4 0.2 4.2 4 0 0 4 4 4 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|397781362|ref|YP_006545834.1| - 9.2 6.6 11.3 9.9 6.5 2.0 3.1 1 1 2 3 3 3 0 Restriction alleviation protein Lar Exosortase_EpsH PF09721.5 gi|397781361|ref|YP_006545835.1| - 1.4e-43 149.0 21.6 2.3e-43 148.3 15.0 1.2 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) DUF788 PF05620.6 gi|397781361|ref|YP_006545835.1| - 7.2 6.4 6.0 7.6 6.3 0.3 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF788) FrhB_FdhB_C PF04432.8 gi|397781363|ref|YP_006545836.1| - 3.8e-41 140.1 0.2 3.8e-41 140.1 0.1 1.6 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|397781363|ref|YP_006545836.1| - 5.5e-25 87.0 0.2 2.2e-24 85.0 0.1 2.0 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|397781363|ref|YP_006545836.1| - 3.2e-08 33.4 15.1 3.2e-08 33.4 10.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|397781363|ref|YP_006545836.1| - 1.3e-07 30.9 14.3 0.00075 18.9 2.4 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397781363|ref|YP_006545836.1| - 3.1e-06 26.8 14.0 0.00089 19.0 0.1 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397781363|ref|YP_006545836.1| - 3e-05 24.3 14.5 0.0013 19.0 0.6 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397781363|ref|YP_006545836.1| - 0.00023 21.4 17.9 0.00023 21.4 12.4 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397781363|ref|YP_006545836.1| - 0.00082 19.1 15.4 0.03 14.1 0.4 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|397781363|ref|YP_006545836.1| - 0.0017 18.1 13.5 0.0047 16.7 2.2 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397781363|ref|YP_006545836.1| - 0.0032 17.8 23.3 0.0072 16.6 14.3 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397781363|ref|YP_006545836.1| - 0.0036 17.0 3.3 0.0036 17.0 2.3 3.5 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|397781363|ref|YP_006545836.1| - 0.007 16.6 22.6 0.02 15.1 13.6 3.1 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397781363|ref|YP_006545836.1| - 0.032 14.5 4.4 0.032 14.5 3.1 3.8 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|397781363|ref|YP_006545836.1| - 0.044 14.5 12.6 0.25 12.1 0.3 3.1 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|397781363|ref|YP_006545836.1| - 9.2 6.9 15.1 2.7 8.6 0.2 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|397781364|ref|YP_006545837.1| - 7.9e-91 304.9 0.0 1e-90 304.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|397781364|ref|YP_006545837.1| - 9.5e-31 105.8 0.0 1.7e-30 105.0 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|397781364|ref|YP_006545837.1| - 6.3e-22 77.1 1.4 1.2e-21 76.2 1.0 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain SIS PF01380.17 gi|397781364|ref|YP_006545837.1| - 0.11 12.0 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 SIS domain FmdE PF02663.9 gi|397781365|ref|YP_006545838.1| - 1.2e-29 102.9 0.0 1.4e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|397781365|ref|YP_006545838.1| - 0.012 15.2 1.1 0.39 10.4 1.6 2.8 2 1 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger TF_Zn_Ribbon PF08271.7 gi|397781365|ref|YP_006545838.1| - 0.082 12.2 0.1 0.27 10.5 0.1 1.9 1 0 0 1 1 1 0 TFIIB zinc-binding UPF0066 PF01980.11 gi|397781366|ref|YP_006545839.1| - 4.5e-34 116.9 0.0 6.6e-34 116.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 FmdE PF02663.9 gi|397781366|ref|YP_006545839.1| - 1.6e-11 44.1 0.1 2.4e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon MoeA_N PF03453.12 gi|397781367|ref|YP_006545840.1| - 2.8e-35 121.0 0.0 2.1e-34 118.2 0.0 2.2 1 1 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.2 gi|397781367|ref|YP_006545840.1| - 3.5e-31 107.6 0.1 2e-30 105.1 0.1 1.9 2 0 0 2 2 2 1 PBP superfamily domain MoCF_biosynth PF00994.19 gi|397781367|ref|YP_006545840.1| - 3.4e-27 94.6 0.1 6.4e-27 93.7 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|397781367|ref|YP_006545840.1| - 1e-12 47.7 0.0 3.3e-12 46.1 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) Phosphonate-bd PF12974.2 gi|397781367|ref|YP_006545840.1| - 0.00013 21.4 0.0 0.00022 20.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.15 gi|397781367|ref|YP_006545840.1| - 0.0074 15.4 0.5 0.0074 15.4 0.4 2.5 3 0 0 3 3 3 1 LysR substrate binding domain SnoaL_3 PF13474.1 gi|397781368|ref|YP_006545841.1| - 1.7e-30 105.5 0.1 1.8e-30 105.4 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|397781368|ref|YP_006545841.1| - 1.5e-12 47.6 0.2 1.7e-12 47.4 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_2 PF12680.2 gi|397781368|ref|YP_006545841.1| - 4e-09 36.7 0.9 5.1e-09 36.4 0.6 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.7 gi|397781368|ref|YP_006545841.1| - 0.0008 18.9 0.0 0.001 18.6 0.0 1.3 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase CaMKII_AD PF08332.5 gi|397781368|ref|YP_006545841.1| - 0.036 13.9 0.0 0.05 13.5 0.0 1.2 1 0 0 1 1 1 0 Calcium/calmodulin dependent protein kinase II Association SnoaL_4 PF13577.1 gi|397781368|ref|YP_006545841.1| - 0.14 12.1 0.4 0.23 11.3 0.2 1.4 1 1 0 1 1 1 0 SnoaL-like domain META PF03724.11 gi|397781369|ref|YP_006545842.1| - 2.4e-42 142.8 0.0 7.2e-21 73.9 0.0 2.1 2 0 0 2 2 2 2 META domain Inh PF02974.9 gi|397781369|ref|YP_006545842.1| - 0.0016 17.9 0.0 1.3 8.5 0.0 2.6 2 0 0 2 2 2 2 Protease inhibitor Inh META PF03724.11 gi|397781370|ref|YP_006545843.1| - 4.6e-96 315.2 0.0 6.4e-25 86.9 0.0 4.1 4 0 0 4 4 4 4 META domain Inh PF02974.9 gi|397781370|ref|YP_006545843.1| - 8e-06 25.3 0.0 2 8.0 0.0 4.4 4 0 0 4 4 4 2 Protease inhibitor Inh TPR_1 PF00515.23 gi|397781371|ref|YP_006545844.1| - 6.1e-48 158.5 3.2 1.2e-11 43.6 0.0 5.1 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|397781371|ref|YP_006545844.1| - 1.4e-42 140.1 5.1 4.6e-09 35.5 0.0 5.1 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|397781371|ref|YP_006545844.1| - 3.3e-42 141.9 5.6 2.5e-15 55.8 0.0 3.1 1 1 1 3 3 3 3 TPR repeat TPR_17 PF13431.1 gi|397781371|ref|YP_006545844.1| - 2.1e-31 105.4 8.8 5.7e-07 29.2 0.0 5.8 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|397781371|ref|YP_006545844.1| - 5.7e-31 106.2 3.0 3.5e-13 49.2 0.1 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|397781371|ref|YP_006545844.1| - 6e-31 106.4 9.6 9.5e-11 42.0 0.5 4.1 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|397781371|ref|YP_006545844.1| - 2e-28 96.0 0.5 6e-05 22.5 0.0 5.1 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|397781371|ref|YP_006545844.1| - 5.1e-25 85.6 8.8 8.8e-07 29.0 0.6 5.1 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|397781371|ref|YP_006545844.1| - 1.6e-24 85.5 11.7 9.1e-11 41.4 2.9 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|397781371|ref|YP_006545844.1| - 3.5e-21 75.2 4.1 5e-10 39.5 0.4 2.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|397781371|ref|YP_006545844.1| - 6.2e-21 72.4 5.9 0.00015 21.3 0.0 5.1 3 1 2 5 5 5 4 Tetratricopeptide repeat TPR_10 PF13374.1 gi|397781371|ref|YP_006545844.1| - 2.3e-14 52.7 10.5 0.0071 16.2 0.1 5.0 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|397781371|ref|YP_006545844.1| - 4.1e-14 51.9 0.1 0.085 13.3 0.0 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat MIT PF04212.13 gi|397781371|ref|YP_006545844.1| - 2.5e-11 43.2 2.2 0.079 12.8 0.1 5.1 5 0 0 5 5 5 2 MIT (microtubule interacting and transport) domain Apc3 PF12895.2 gi|397781371|ref|YP_006545844.1| - 9.7e-11 41.6 0.2 0.00035 20.6 0.1 2.6 1 1 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.9 gi|397781371|ref|YP_006545844.1| - 1.7e-08 34.0 4.1 3.4 8.3 0.0 5.6 5 1 0 5 5 5 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|397781371|ref|YP_006545844.1| - 2.1e-08 33.5 0.5 7.7e-06 25.1 0.1 3.8 1 1 1 2 2 2 1 Tetratricopeptide repeat DUF3856 PF12968.2 gi|397781371|ref|YP_006545844.1| - 8.2e-08 32.1 0.5 0.0037 17.0 0.1 3.5 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|397781371|ref|YP_006545844.1| - 8.2e-08 31.4 0.2 0.0045 15.7 0.0 2.9 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|397781371|ref|YP_006545844.1| - 8.4e-07 28.7 1.1 1.2 9.0 0.0 4.8 4 1 1 5 5 5 2 Fis1 C-terminal tetratricopeptide repeat DDT PF02791.12 gi|397781371|ref|YP_006545844.1| - 1e-05 25.2 0.1 0.076 12.7 0.0 3.1 1 1 3 4 4 4 2 DDT domain BTAD PF03704.12 gi|397781371|ref|YP_006545844.1| - 1.4e-05 25.4 2.3 0.075 13.3 0.4 3.1 1 1 3 4 4 4 3 Bacterial transcriptional activator domain FAT PF02259.18 gi|397781371|ref|YP_006545844.1| - 3.4e-05 23.0 0.0 2 7.3 0.0 3.4 1 1 3 4 4 4 2 FAT domain PPR PF01535.15 gi|397781371|ref|YP_006545844.1| - 5.8e-05 22.7 1.3 4.8 7.3 0.0 5.3 5 0 0 5 5 5 0 PPR repeat Coatomer_E PF04733.9 gi|397781371|ref|YP_006545844.1| - 0.00013 21.2 0.3 0.19 10.9 0.1 2.4 1 1 1 2 2 2 2 Coatomer epsilon subunit Alkyl_sulf_dimr PF14863.1 gi|397781371|ref|YP_006545844.1| - 0.00028 21.1 0.2 0.39 10.9 0.0 2.6 2 1 1 3 3 3 1 Alkyl sulfatase dimerisation TMEM213 PF15192.1 gi|397781371|ref|YP_006545844.1| - 0.00045 20.1 0.0 7.4 6.6 0.0 3.5 4 0 0 4 4 3 0 TMEM213 family TPR_5 PF12688.2 gi|397781371|ref|YP_006545844.1| - 0.0055 16.7 0.7 8.5 6.4 0.0 3.7 2 1 1 3 3 3 0 Tetratrico peptide repeat PPTA PF01239.17 gi|397781371|ref|YP_006545844.1| - 0.012 14.9 0.0 1.6 8.2 0.0 3.3 3 1 0 3 3 3 0 Protein prenyltransferase alpha subunit repeat Bacteriocin_IIi PF11758.3 gi|397781371|ref|YP_006545844.1| - 0.014 15.0 0.5 1.7 8.3 0.0 3.3 4 0 0 4 4 3 0 Aureocin-like type II bacteriocin Rapsyn_N PF10579.4 gi|397781371|ref|YP_006545844.1| - 0.094 12.5 0.0 2.5 7.9 0.0 2.4 1 1 2 3 3 3 0 Rapsyn N-terminal myristoylation and linker region TPR_21 PF09976.4 gi|397781371|ref|YP_006545844.1| - 0.12 12.3 0.1 1.4 8.8 0.0 2.5 3 1 0 3 3 3 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|397781371|ref|YP_006545844.1| - 0.17 11.2 1.1 4.8 6.5 0.2 3.3 4 1 0 4 4 4 0 26S proteasome subunit RPN7 DisA-linker PF10635.4 gi|397781372|ref|YP_006545845.1| - 0.042 13.3 2.1 0.044 13.2 1.5 1.0 1 0 0 1 1 1 0 DisA bacterial checkpoint controller linker region DDE_Tnp_1 PF01609.16 gi|397781373|ref|YP_006545846.1| - 1.8e-05 24.3 0.0 2.9e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain Glyco_hydro_77 PF02446.12 gi|397781375|ref|YP_006545848.1| - 6e-145 483.5 0.0 7.4e-145 483.3 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase Lebercilin PF15619.1 gi|397781375|ref|YP_006545848.1| - 0.036 13.4 0.5 0.053 12.9 0.4 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease TPR_2 PF07719.12 gi|397781376|ref|YP_006545849.1| - 1.2e-156 496.4 79.5 7.6e-07 28.5 0.0 30.1 30 0 0 30 30 30 28 Tetratricopeptide repeat TPR_1 PF00515.23 gi|397781376|ref|YP_006545849.1| - 3.4e-147 472.7 40.0 3e-07 29.7 0.0 30.0 30 0 0 30 30 30 26 Tetratricopeptide repeat TPR_11 PF13414.1 gi|397781376|ref|YP_006545849.1| - 5.3e-147 477.6 56.3 5.3e-12 45.2 0.1 16.8 7 4 9 19 19 19 19 TPR repeat TPR_16 PF13432.1 gi|397781376|ref|YP_006545849.1| - 1.4e-141 458.9 99.7 3.1e-12 46.8 0.9 18.4 10 5 9 20 20 20 20 Tetratricopeptide repeat TPR_19 PF14559.1 gi|397781376|ref|YP_006545849.1| - 1.3e-116 381.0 36.3 1.5e-08 34.8 0.0 17.2 10 5 5 17 17 17 17 Tetratricopeptide repeat TPR_8 PF13181.1 gi|397781376|ref|YP_006545849.1| - 1.9e-111 355.7 1.7 2.9e-05 23.5 0.0 29.8 27 3 3 30 30 30 18 Tetratricopeptide repeat TPR_14 PF13428.1 gi|397781376|ref|YP_006545849.1| - 1.3e-108 345.4 96.7 2.6e-05 24.4 0.1 29.7 3 3 27 30 30 30 29 Tetratricopeptide repeat TPR_17 PF13431.1 gi|397781376|ref|YP_006545849.1| - 6.1e-89 284.9 30.7 0.0013 18.8 0.0 28.6 29 1 1 30 30 29 19 Tetratricopeptide repeat TPR_12 PF13424.1 gi|397781376|ref|YP_006545849.1| - 2.5e-84 277.2 78.2 1.4e-07 31.3 0.0 19.6 5 3 13 19 19 19 19 Tetratricopeptide repeat TPR_7 PF13176.1 gi|397781376|ref|YP_006545849.1| - 1.1e-76 246.6 60.9 0.00038 20.0 0.1 29.3 29 1 1 30 30 30 17 Tetratricopeptide repeat TPR_9 PF13371.1 gi|397781376|ref|YP_006545849.1| - 7.2e-71 234.0 86.0 1.9e-07 30.8 0.0 18.3 4 3 15 21 21 21 21 Tetratricopeptide repeat Apc3 PF12895.2 gi|397781376|ref|YP_006545849.1| - 4.9e-69 228.4 4.0 6.5e-07 29.3 0.0 12.5 8 4 5 13 13 13 13 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|397781376|ref|YP_006545849.1| - 2.9e-58 190.4 46.5 0.016 15.6 0.1 27.9 30 0 0 30 30 28 10 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|397781376|ref|YP_006545849.1| - 3.1e-35 119.8 13.9 0.37 10.7 0.0 20.4 15 4 5 20 20 20 5 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|397781376|ref|YP_006545849.1| - 1.5e-32 113.0 3.7 2.1e-05 23.5 0.0 12.5 7 3 7 14 14 14 7 NMDA receptor-regulated protein 1 TPR_20 PF14561.1 gi|397781376|ref|YP_006545849.1| - 1.4e-29 102.0 28.6 0.04 14.0 0.0 16.9 6 5 12 18 18 17 6 Tetratricopeptide repeat TPR_4 PF07721.9 gi|397781376|ref|YP_006545849.1| - 4.4e-25 85.4 130.6 0.27 11.7 0.3 28.7 30 0 0 30 30 27 8 Tetratricopeptide repeat TPR_15 PF13429.1 gi|397781376|ref|YP_006545849.1| - 2.1e-23 82.7 28.4 0.0022 17.0 1.7 11.3 3 3 7 10 10 10 7 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|397781376|ref|YP_006545849.1| - 1.2e-21 77.4 6.3 0.0022 18.2 0.1 10.5 7 1 4 11 11 11 3 Alkyl sulfatase dimerisation BTAD PF03704.12 gi|397781376|ref|YP_006545849.1| - 1.2e-21 77.5 69.8 0.012 15.9 0.3 14.3 5 3 11 16 16 16 7 Bacterial transcriptional activator domain DUF3856 PF12968.2 gi|397781376|ref|YP_006545849.1| - 4.2e-19 68.7 30.8 1.3 8.8 0.0 19.4 8 3 8 19 19 18 3 Domain of Unknown Function (DUF3856) TPR_10 PF13374.1 gi|397781376|ref|YP_006545849.1| - 3.2e-11 42.7 117.3 0.13 12.2 0.2 26.3 30 0 0 30 30 27 4 Tetratricopeptide repeat TPR_21 PF09976.4 gi|397781376|ref|YP_006545849.1| - 5.9e-11 42.5 24.0 0.049 13.5 0.4 8.5 8 1 1 9 9 9 3 Tetratricopeptide repeat TPR_5 PF12688.2 gi|397781376|ref|YP_006545849.1| - 2.3e-09 37.3 32.6 0.041 13.9 0.9 11.6 6 5 6 13 13 13 3 Tetratrico peptide repeat SNAP PF14938.1 gi|397781376|ref|YP_006545849.1| - 2e-08 33.7 10.1 0.075 12.1 0.0 7.5 2 2 2 7 7 7 2 Soluble NSF attachment protein, SNAP Coatomer_E PF04733.9 gi|397781376|ref|YP_006545849.1| - 2.1e-08 33.7 0.0 1.4 8.0 0.0 7.2 4 4 1 6 6 6 2 Coatomer epsilon subunit MIT PF04212.13 gi|397781376|ref|YP_006545849.1| - 1.5e-06 28.0 28.4 0.44 10.4 0.0 14.7 17 3 1 19 19 15 1 MIT (microtubule interacting and transport) domain Type_III_YscG PF09477.5 gi|397781376|ref|YP_006545849.1| - 5.3e-06 26.4 16.6 1 9.4 0.0 9.8 5 3 6 12 12 10 2 Bacterial type II secretion system chaperone protein (type_III_yscG) RPN7 PF10602.4 gi|397781376|ref|YP_006545849.1| - 9.2e-06 25.1 9.4 11 5.3 0.0 9.6 8 3 2 10 10 10 0 26S proteasome subunit RPN7 Paf67 PF10255.4 gi|397781376|ref|YP_006545849.1| - 5.9e-05 22.1 0.1 2.7 6.7 0.0 5.7 5 1 1 6 6 6 1 RNA polymerase I-associated factor PAF67 SHNi-TPR PF10516.4 gi|397781376|ref|YP_006545849.1| - 6.6e-05 22.0 1.7 0.95 8.7 0.0 6.1 7 0 0 7 7 7 1 SHNi-TPR SPOB_a PF14689.1 gi|397781376|ref|YP_006545849.1| - 0.00015 21.2 0.3 27 4.4 0.0 7.7 10 0 0 10 10 9 0 Sensor_kinase_SpoOB-type, alpha-helical domain TPR_3 PF07720.7 gi|397781376|ref|YP_006545849.1| - 0.00021 20.9 16.2 20 5.1 0.0 12.0 14 0 0 14 14 11 0 Tetratricopeptide repeat Rapsyn_N PF10579.4 gi|397781376|ref|YP_006545849.1| - 0.00044 19.9 0.0 7.6 6.4 0.0 6.8 8 0 0 8 8 7 0 Rapsyn N-terminal myristoylation and linker region ChAPs PF09295.5 gi|397781376|ref|YP_006545849.1| - 0.00075 18.3 0.0 0.14 10.8 0.0 3.3 3 1 1 5 5 4 1 ChAPs (Chs5p-Arf1p-binding proteins) PPR PF01535.15 gi|397781376|ref|YP_006545849.1| - 0.0036 17.1 27.8 34 4.7 0.1 13.9 19 0 0 19 19 11 0 PPR repeat Sec16_C PF12931.2 gi|397781376|ref|YP_006545849.1| - 0.033 13.9 0.5 0.62 9.7 0.1 3.3 4 0 0 4 4 2 0 Sec23-binding domain of Sec16 Nterm_IS4 PF13006.2 gi|397781376|ref|YP_006545849.1| - 0.086 12.8 0.0 6.2 6.9 0.0 3.1 3 0 0 3 3 2 0 Insertion element 4 transposase N-terminal FKBP_C PF00254.23 gi|397781377|ref|YP_006545850.1| - 5.1e-26 90.5 0.0 7.6e-26 89.9 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase SM-ATX PF14438.1 gi|397781377|ref|YP_006545850.1| - 0.0082 16.0 3.1 0.022 14.6 0.2 2.3 2 0 0 2 2 2 1 Ataxin 2 SM domain BPL_C PF02237.12 gi|397781377|ref|YP_006545850.1| - 0.02 14.5 0.5 0.045 13.4 0.3 1.6 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain DUF2642 PF10842.3 gi|397781377|ref|YP_006545850.1| - 0.052 13.0 0.1 0.094 12.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2642) CDC48_2 PF02933.12 gi|397781377|ref|YP_006545850.1| - 0.16 11.6 0.8 1 9.0 0.1 2.3 2 1 0 2 2 2 0 Cell division protein 48 (CDC48), domain 2 DUF21 PF01595.15 gi|397781378|ref|YP_006545851.1| - 1.5e-51 174.3 5.1 2.1e-51 173.8 3.6 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|397781378|ref|YP_006545851.1| - 1.9e-23 82.0 0.0 4.9e-23 80.7 0.0 1.8 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|397781378|ref|YP_006545851.1| - 2.6e-13 49.5 0.5 2.3e-05 24.1 0.1 2.5 2 0 0 2 2 2 2 CBS domain ABC2_membrane_3 PF12698.2 gi|397781378|ref|YP_006545851.1| - 7.7 5.4 7.2 0.69 8.8 1.3 1.8 2 0 0 2 2 2 0 ABC-2 family transporter protein Amino_oxidase PF01593.19 gi|397781379|ref|YP_006545852.1| - 2.3e-15 56.6 0.0 3.3e-09 36.3 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|397781379|ref|YP_006545852.1| - 1.5e-12 47.3 0.5 6.1e-12 45.3 0.1 2.1 1 1 1 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|397781379|ref|YP_006545852.1| - 1.1e-05 25.7 0.2 2.2e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|397781379|ref|YP_006545852.1| - 0.00036 20.6 0.0 0.12 12.3 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|397781379|ref|YP_006545852.1| - 0.0017 17.3 1.0 0.0025 16.7 0.2 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|397781379|ref|YP_006545852.1| - 0.0025 16.9 0.1 0.0036 16.4 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|397781379|ref|YP_006545852.1| - 0.035 13.8 0.0 0.084 12.5 0.0 1.6 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Glycos_transf_1 PF00534.15 gi|397781380|ref|YP_006545853.1| - 5.5e-24 84.5 0.0 7.9e-24 83.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397781380|ref|YP_006545853.1| - 2.9e-13 50.1 0.0 5.3e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|397781380|ref|YP_006545853.1| - 2.3e-09 37.2 0.0 4e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|397781380|ref|YP_006545853.1| - 3.8e-05 23.8 0.0 9e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|397781381|ref|YP_006545854.1| - 3e-32 111.6 0.0 4.2e-32 111.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|397781381|ref|YP_006545854.1| - 1.7e-14 54.1 0.2 2.5e-14 53.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|397781381|ref|YP_006545854.1| - 7.3e-10 38.3 0.0 9.2e-10 38.0 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|397781381|ref|YP_006545854.1| - 1.6e-05 24.2 0.1 2.7e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|397781381|ref|YP_006545854.1| - 8.7e-05 22.3 0.1 0.00013 21.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 4HBT PF03061.17 gi|397781382|ref|YP_006545855.1| - 8.6e-11 41.8 0.4 1.3e-10 41.2 0.3 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|397781382|ref|YP_006545855.1| - 1.8e-07 31.2 0.1 2.6e-07 30.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|397781382|ref|YP_006545855.1| - 3.1e-05 23.8 1.1 3.3e-05 23.7 0.3 1.4 2 0 0 2 2 2 1 Thioesterase-like superfamily YiiD_Cterm PF09500.5 gi|397781382|ref|YP_006545855.1| - 0.011 15.2 0.1 0.24 10.9 0.0 2.3 1 1 0 1 1 1 0 Putative thioesterase (yiiD_Cterm) PMSR PF01625.16 gi|397781383|ref|YP_006545856.1| - 1.6e-66 223.0 0.0 1.7e-66 222.8 0.0 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Abhydrolase_9 PF10081.4 gi|397781383|ref|YP_006545856.1| - 0.064 11.9 0.0 0.1 11.2 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta-hydrolase family DUF2148 PF09918.4 gi|397781384|ref|YP_006545857.1| - 4.6e-33 112.7 0.3 7.9e-33 112.0 0.2 1.4 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.8 gi|397781384|ref|YP_006545857.1| - 0.00074 19.0 1.3 0.0017 17.8 0.9 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster GHMP_kinases_N PF00288.21 gi|397781385|ref|YP_006545858.1| - 9.5e-06 25.5 0.2 2.4e-05 24.2 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF373 PF04123.8 gi|397781386|ref|YP_006545859.1| - 2.4e-112 375.3 6.6 3.2e-112 374.9 4.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Reticulon PF02453.12 gi|397781386|ref|YP_006545859.1| - 0.069 12.7 4.2 6 6.4 0.0 2.3 2 0 0 2 2 2 0 Reticulon DUF1352 PF07086.7 gi|397781386|ref|YP_006545859.1| - 0.078 12.6 2.8 0.14 11.7 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1352) DUF2895 PF11444.3 gi|397781387|ref|YP_006545860.1| - 0.056 12.6 3.1 0.14 11.3 2.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2895) DUF3584 PF12128.3 gi|397781387|ref|YP_006545860.1| - 3.3 4.9 46.7 4.4 4.4 32.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) OrfB_Zn_ribbon PF07282.6 gi|397781388|ref|YP_006545861.1| - 2.7e-06 26.9 0.1 4.1e-06 26.3 0.1 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|397781388|ref|YP_006545861.1| - 0.035 13.4 0.7 0.056 12.7 0.5 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Cas_CXXC_CXXC PF09706.5 gi|397781388|ref|YP_006545861.1| - 0.14 12.3 0.0 0.29 11.3 0.0 1.5 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) FtsZ_C PF12327.3 gi|397781389|ref|YP_006545862.1| - 2.7e-33 113.9 0.2 1.2e-32 111.8 0.0 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|397781389|ref|YP_006545862.1| - 3.8e-32 111.8 0.7 1.2e-31 110.2 0.5 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain CPSase_L_chain PF00289.17 gi|397781389|ref|YP_006545862.1| - 0.037 14.1 0.9 0.71 10.0 0.0 2.8 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Methyltransf_15 PF09445.5 gi|397781389|ref|YP_006545862.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase RHH_1 PF01402.16 gi|397781390|ref|YP_006545863.1| - 2e-08 33.7 0.1 2.7e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HHH_5 PF14520.1 gi|397781390|ref|YP_006545863.1| - 0.12 12.6 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix domain Aminotran_1_2 PF00155.16 gi|397781391|ref|YP_006545864.1| - 1.2e-36 126.4 0.0 4e-34 118.1 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class I and II NTP_transf_3 PF12804.2 gi|397781392|ref|YP_006545865.1| - 5.7e-17 62.2 0.0 6.4e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|397781392|ref|YP_006545865.1| - 0.0019 17.5 0.0 0.0024 17.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.14 gi|397781392|ref|YP_006545865.1| - 0.0094 15.5 0.0 0.019 14.6 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|397781392|ref|YP_006545865.1| - 0.029 13.8 0.0 0.043 13.3 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Saccharop_dh_N PF04455.7 gi|397781393|ref|YP_006545866.1| - 1.7e-40 137.2 0.0 3.4e-40 136.3 0.0 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.17 gi|397781393|ref|YP_006545866.1| - 0.015 15.0 0.4 0.066 12.9 0.0 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain AA_kinase PF00696.23 gi|397781393|ref|YP_006545866.1| - 0.017 14.6 0.1 0.038 13.5 0.1 1.5 1 0 0 1 1 1 0 Amino acid kinase family Porphobil_deam PF01379.15 gi|397781393|ref|YP_006545866.1| - 0.093 11.6 0.0 0.31 9.9 0.0 2.0 1 1 0 1 1 1 0 Porphobilinogen deaminase, dipyromethane cofactor binding domain Radical_SAM PF04055.16 gi|397781395|ref|YP_006545867.1| - 5.3e-10 39.7 0.0 9.3e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Big_3_4 PF13754.1 gi|397781394|ref|YP_006545868.1| - 0.006 16.8 2.1 0.057 13.7 0.5 4.4 5 1 0 5 5 5 2 Bacterial Ig-like domain (group 3) DUF4480 PF13715.1 gi|397781394|ref|YP_006545868.1| - 0.0074 16.3 0.5 0.058 13.4 0.1 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4480) DUF4198 PF10670.4 gi|397781394|ref|YP_006545868.1| - 0.021 14.8 0.3 0.064 13.2 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) Cna_B PF05738.8 gi|397781394|ref|YP_006545868.1| - 0.029 14.1 2.5 1.5 8.6 0.1 2.9 3 0 0 3 3 3 0 Cna protein B-type domain GPI-anchored PF10342.4 gi|397781394|ref|YP_006545868.1| - 0.058 13.8 0.6 3.7 8.1 0.0 2.7 2 0 0 2 2 2 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family DUF3244 PF11589.3 gi|397781394|ref|YP_006545868.1| - 0.075 12.7 0.1 0.81 9.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3244) Big_1 PF02369.11 gi|397781394|ref|YP_006545868.1| - 1 9.3 4.8 2.8 7.9 0.0 3.1 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) Pyridox_oxidase PF01243.15 gi|397781396|ref|YP_006545869.1| - 1.5e-20 72.9 0.0 1.9e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|397781396|ref|YP_006545869.1| - 0.014 14.9 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) Pyridox_oxase_2 PF12766.2 gi|397781396|ref|YP_006545869.1| - 0.11 12.7 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase HTH_20 PF12840.2 gi|397781397|ref|YP_006545870.1| - 5.7e-10 38.8 0.4 1.9e-09 37.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|397781397|ref|YP_006545870.1| - 1.1e-07 31.3 0.2 2.9e-07 30.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|397781397|ref|YP_006545870.1| - 5.2e-05 22.8 0.2 0.00066 19.2 0.0 2.3 1 1 1 2 2 2 1 MarR family HTH_34 PF13601.1 gi|397781397|ref|YP_006545870.1| - 0.00061 19.7 0.2 0.0013 18.7 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|397781397|ref|YP_006545870.1| - 0.0056 16.0 0.0 0.012 14.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rio2_N PF09202.6 gi|397781397|ref|YP_006545870.1| - 0.067 13.2 0.1 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Rio2, N-terminal HTH_45 PF14947.1 gi|397781397|ref|YP_006545870.1| - 0.077 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.1 gi|397781397|ref|YP_006545870.1| - 0.13 12.5 0.1 0.51 10.7 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain PemK PF02452.12 gi|397781398|ref|YP_006545871.1| - 3e-08 33.8 0.0 3.7e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 PemK-like protein PAS_4 PF08448.5 gi|397781399|ref|YP_006545872.1| - 4.9e-33 113.4 2.1 4.5e-15 55.6 0.2 3.9 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|397781399|ref|YP_006545872.1| - 8.5e-24 83.9 0.0 7.7e-08 32.6 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|397781399|ref|YP_006545872.1| - 2.1e-17 62.9 0.0 6e-07 29.2 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|397781399|ref|YP_006545872.1| - 2.3e-09 37.2 0.0 3.6e-07 30.2 0.0 3.3 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|397781399|ref|YP_006545872.1| - 7e-07 28.8 0.2 0.0031 17.3 0.1 3.5 3 0 0 3 3 3 2 PAS domain HisKA PF00512.20 gi|397781399|ref|YP_006545872.1| - 0.00033 20.6 1.5 0.0017 18.3 0.3 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|397781399|ref|YP_006545872.1| - 0.0064 16.5 0.4 0.34 10.9 0.0 2.9 3 0 0 3 3 3 1 PAS fold PAS_10 PF13596.1 gi|397781399|ref|YP_006545872.1| - 0.11 12.8 0.0 5.9 7.2 0.0 3.1 4 0 0 4 4 4 0 PAS domain Acylphosphatase PF00708.13 gi|397781400|ref|YP_006545873.1| - 7.4e-27 93.2 0.1 8.4e-27 93.1 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase Nitroreductase PF00881.19 gi|397781401|ref|YP_006545874.1| - 1.5e-34 119.1 0.0 1.9e-34 118.8 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|397781401|ref|YP_006545874.1| - 0.0028 16.8 0.4 2 7.5 0.1 3.0 2 1 0 2 2 2 2 Putative TM nitroreductase Trypsin_2 PF13365.1 gi|397781402|ref|YP_006545875.1| - 1.3e-22 80.0 0.3 2.1e-22 79.3 0.2 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|397781402|ref|YP_006545875.1| - 2.6e-10 40.0 0.0 4.5e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|397781402|ref|YP_006545875.1| - 7.2e-10 38.8 0.0 3.1e-09 36.7 0.0 1.8 1 1 0 1 1 1 1 Trypsin PDZ PF00595.19 gi|397781402|ref|YP_006545875.1| - 1.2e-06 28.6 0.0 2.2e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|397781402|ref|YP_006545875.1| - 0.00011 20.8 0.7 0.085 11.2 0.0 2.1 2 0 0 2 2 2 2 Peptidase S46 GRASP55_65 PF04495.9 gi|397781402|ref|YP_006545875.1| - 0.0031 17.5 0.0 0.0082 16.1 0.0 1.7 2 0 0 2 2 2 1 GRASP55/65 PDZ-like domain Abhydrolase_5 PF12695.2 gi|397781403|ref|YP_006545876.1| - 1.8e-22 79.6 0.4 2.3e-22 79.2 0.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|397781403|ref|YP_006545876.1| - 5.6e-14 52.5 2.7 2.9e-09 37.1 1.2 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|397781403|ref|YP_006545876.1| - 5.3e-10 38.9 0.0 7.2e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|397781403|ref|YP_006545876.1| - 5.6e-07 29.3 0.1 4.9e-05 23.0 0.1 2.1 1 1 0 2 2 2 1 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|397781403|ref|YP_006545876.1| - 8.4e-06 25.6 0.3 0.006 16.3 0.2 2.1 1 1 1 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S9 PF00326.16 gi|397781403|ref|YP_006545876.1| - 0.00015 21.0 0.0 0.02 14.1 0.0 2.2 1 1 1 2 2 2 1 Prolyl oligopeptidase family FSH1 PF03959.8 gi|397781403|ref|YP_006545876.1| - 0.0002 20.8 0.0 0.00032 20.1 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) PGAP1 PF07819.8 gi|397781403|ref|YP_006545876.1| - 0.00041 19.9 0.2 0.0091 15.6 0.1 2.5 1 1 2 3 3 3 1 PGAP1-like protein Abhydrolase_4 PF08386.5 gi|397781403|ref|YP_006545876.1| - 0.0013 18.5 0.0 0.0024 17.7 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.11 gi|397781403|ref|YP_006545876.1| - 0.006 16.0 0.0 0.008 15.6 0.0 1.2 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase PAF-AH_p_II PF03403.8 gi|397781403|ref|YP_006545876.1| - 0.0088 14.3 0.0 0.01 14.1 0.0 1.1 1 0 0 1 1 1 1 Platelet-activating factor acetylhydrolase, isoform II AXE1 PF05448.7 gi|397781403|ref|YP_006545876.1| - 0.0088 14.5 0.0 0.31 9.5 0.2 2.1 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Lipase_3 PF01764.20 gi|397781403|ref|YP_006545876.1| - 0.026 14.1 0.0 0.043 13.4 0.0 1.5 1 0 0 1 1 1 0 Lipase (class 3) Peptidase_S15 PF02129.13 gi|397781403|ref|YP_006545876.1| - 0.029 13.8 0.0 0.88 8.9 0.2 2.1 1 1 1 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) DUF2048 PF09752.4 gi|397781403|ref|YP_006545876.1| - 0.097 11.5 0.4 0.14 10.9 0.3 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) Aminotran_1_2 PF00155.16 gi|397781404|ref|YP_006545877.1| - 1.3e-39 136.2 0.0 1.5e-39 135.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|397781404|ref|YP_006545877.1| - 2e-09 36.6 0.0 2.9e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|397781404|ref|YP_006545877.1| - 0.00011 20.6 0.0 0.00017 20.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|397781404|ref|YP_006545877.1| - 0.00013 21.1 0.0 0.00019 20.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|397781404|ref|YP_006545877.1| - 0.0097 14.5 0.0 0.3 9.7 0.0 2.2 2 0 0 2 2 2 1 Allinase GDPD PF03009.12 gi|397781405|ref|YP_006545878.1| - 1.9e-38 132.4 0.0 1.8e-36 125.9 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|397781405|ref|YP_006545878.1| - 0.0085 16.2 0.1 0.037 14.2 0.3 2.0 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family DUF2795 PF11387.3 gi|397781406|ref|YP_006545879.1| - 6.9e-16 57.8 0.1 1.1e-15 57.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) SBP_bac_3 PF00497.15 gi|397781407|ref|YP_006545880.1| - 1.9e-55 187.5 0.7 2.2e-55 187.3 0.5 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.2 gi|397781407|ref|YP_006545880.1| - 0.017 14.4 0.1 0.085 12.2 0.1 1.9 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|397781407|ref|YP_006545880.1| - 0.11 12.0 0.3 1.9 8.0 0.1 2.2 1 1 1 2 2 2 0 NMT1/THI5 like EamA PF00892.15 gi|397781408|ref|YP_006545881.1| - 2.3e-19 69.6 29.0 7.1e-13 48.6 6.0 2.3 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|397781408|ref|YP_006545881.1| - 0.00071 19.7 10.6 0.00071 19.7 7.4 3.5 2 2 2 4 4 4 2 Multidrug resistance efflux transporter BPD_transp_1 PF00528.17 gi|397781409|ref|YP_006545882.1| - 3.3e-20 72.3 12.8 3.3e-20 72.3 8.9 1.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|397781410|ref|YP_006545883.1| - 7.1e-35 120.2 0.0 9.5e-35 119.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397781410|ref|YP_006545883.1| - 5.2e-14 52.8 0.0 1.9e-08 34.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397781410|ref|YP_006545883.1| - 1.4e-05 24.4 0.1 0.0023 17.2 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|397781410|ref|YP_006545883.1| - 4.2e-05 23.6 0.2 0.00021 21.3 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|397781410|ref|YP_006545883.1| - 4.3e-05 22.9 0.0 7.8e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|397781410|ref|YP_006545883.1| - 5e-05 22.5 0.0 7.1e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|397781410|ref|YP_006545883.1| - 0.00013 21.1 0.0 0.096 11.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|397781410|ref|YP_006545883.1| - 0.0014 18.1 0.2 0.13 11.6 0.0 2.3 1 1 0 2 2 2 1 AAA-like domain AAA_14 PF13173.1 gi|397781410|ref|YP_006545883.1| - 0.0022 17.9 0.0 0.0087 15.9 0.0 1.8 1 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|397781410|ref|YP_006545883.1| - 0.0033 16.8 0.4 0.12 11.7 0.0 2.3 1 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|397781410|ref|YP_006545883.1| - 0.0033 17.5 0.3 0.029 14.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|397781410|ref|YP_006545883.1| - 0.0039 17.0 0.2 0.04 13.8 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|397781410|ref|YP_006545883.1| - 0.004 17.3 0.0 0.032 14.4 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|397781410|ref|YP_006545883.1| - 0.0043 17.4 0.0 0.0056 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|397781410|ref|YP_006545883.1| - 0.0064 15.1 0.2 1 7.8 0.1 2.8 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_13 PF13166.1 gi|397781410|ref|YP_006545883.1| - 0.012 14.1 0.0 1.3 7.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|397781410|ref|YP_006545883.1| - 0.014 14.9 0.1 0.039 13.5 0.0 1.7 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|397781410|ref|YP_006545883.1| - 0.026 14.4 0.1 0.085 12.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|397781410|ref|YP_006545883.1| - 0.03 14.1 0.0 0.074 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|397781410|ref|YP_006545883.1| - 0.042 13.6 0.0 0.096 12.4 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain IstB_IS21 PF01695.12 gi|397781410|ref|YP_006545883.1| - 0.064 12.6 0.0 0.28 10.5 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein MobB PF03205.9 gi|397781410|ref|YP_006545883.1| - 0.066 12.9 0.1 0.16 11.7 0.0 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|397781410|ref|YP_006545883.1| - 0.085 13.6 0.5 0.16 12.7 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|397781410|ref|YP_006545883.1| - 0.12 12.1 0.0 0.39 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|397781410|ref|YP_006545883.1| - 0.12 11.4 0.0 0.38 9.8 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI BPD_transp_1 PF00528.17 gi|397781411|ref|YP_006545884.1| - 2e-15 56.7 18.7 2e-15 56.7 13.0 1.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2754 PF10953.3 gi|397781411|ref|YP_006545884.1| - 9.7 6.3 8.3 1.1 9.3 2.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2754) DeoC PF01791.4 gi|397781412|ref|YP_006545885.1| - 1.1e-36 126.3 0.0 1.4e-36 126.0 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase PfkB PF00294.19 gi|397781412|ref|YP_006545885.1| - 0.1 11.7 1.7 0.59 9.2 0.7 2.1 1 1 1 2 2 2 0 pfkB family carbohydrate kinase DUF2191 PF09957.4 gi|397781412|ref|YP_006545885.1| - 0.1 12.4 0.2 1 9.2 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) PFK PF00365.15 gi|397781413|ref|YP_006545886.1| - 1.1e-95 319.9 8.5 3.8e-94 314.7 5.9 2.0 1 1 0 1 1 1 1 Phosphofructokinase GARS_N PF02844.10 gi|397781413|ref|YP_006545886.1| - 0.087 13.3 0.0 0.32 11.4 0.0 2.0 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain ABC_membrane PF00664.18 gi|397781415|ref|YP_006545888.1| - 6.2e-39 134.0 10.7 8.3e-39 133.6 7.4 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|397781415|ref|YP_006545888.1| - 6.3e-34 117.2 0.0 1.7e-33 115.8 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|397781415|ref|YP_006545888.1| - 6.1e-07 29.6 0.0 0.00066 19.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397781415|ref|YP_006545888.1| - 1.8e-05 24.0 0.1 0.00081 18.6 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF87 PF01935.12 gi|397781415|ref|YP_006545888.1| - 0.001 18.9 0.2 0.0033 17.2 0.0 1.9 2 0 0 2 2 1 1 Domain of unknown function DUF87 AAA_29 PF13555.1 gi|397781415|ref|YP_006545888.1| - 0.0017 17.8 0.0 0.0038 16.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|397781415|ref|YP_006545888.1| - 0.0027 16.8 0.0 0.0051 15.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|397781415|ref|YP_006545888.1| - 0.0034 16.8 1.0 0.28 10.6 0.0 2.9 3 0 0 3 3 3 1 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|397781415|ref|YP_006545888.1| - 0.006 16.0 0.4 0.031 13.6 0.1 2.3 2 1 0 2 2 2 1 AAA-like domain T2SE PF00437.15 gi|397781415|ref|YP_006545888.1| - 0.0077 15.1 0.0 0.048 12.5 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|397781415|ref|YP_006545888.1| - 0.0079 15.9 0.4 1.9 8.1 0.0 2.3 2 0 0 2 2 2 1 NTPase MobB PF03205.9 gi|397781415|ref|YP_006545888.1| - 0.011 15.4 0.1 0.026 14.2 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|397781415|ref|YP_006545888.1| - 0.013 15.5 0.2 0.031 14.2 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|397781415|ref|YP_006545888.1| - 0.014 14.6 0.0 0.026 13.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|397781415|ref|YP_006545888.1| - 0.016 15.1 0.1 0.032 14.1 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|397781415|ref|YP_006545888.1| - 0.018 14.7 0.1 0.018 14.7 0.0 2.3 2 0 0 2 2 1 0 Part of AAA domain UPF0079 PF02367.12 gi|397781415|ref|YP_006545888.1| - 0.018 14.6 0.0 0.036 13.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DEAD PF00270.24 gi|397781415|ref|YP_006545888.1| - 0.02 14.4 0.2 0.071 12.5 0.1 1.8 1 1 0 1 1 1 0 DEAD/DEAH box helicase NACHT PF05729.7 gi|397781415|ref|YP_006545888.1| - 0.02 14.5 0.1 0.38 10.3 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|397781415|ref|YP_006545888.1| - 0.022 15.5 0.0 0.048 14.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|397781415|ref|YP_006545888.1| - 0.027 13.8 0.0 0.064 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|397781415|ref|YP_006545888.1| - 0.055 13.6 0.1 0.18 11.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|397781415|ref|YP_006545888.1| - 0.085 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.1 gi|397781415|ref|YP_006545888.1| - 0.1 12.9 0.0 0.17 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|397781415|ref|YP_006545888.1| - 0.11 11.2 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Dynamin_N PF00350.18 gi|397781415|ref|YP_006545888.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Dynamin family AAA_14 PF13173.1 gi|397781415|ref|YP_006545888.1| - 0.14 12.0 0.0 0.91 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF4191 PF13829.1 gi|397781415|ref|YP_006545888.1| - 1 8.4 4.5 0.13 11.3 0.2 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4191) RRN7 PF11781.3 gi|397781416|ref|YP_006545889.1| - 0.0036 16.7 4.9 0.0036 16.7 3.4 2.8 3 1 0 3 3 3 1 RNA polymerase I-specific transcription initiation factor Rrn7 C_GCAxxG_C_C PF09719.5 gi|397781416|ref|YP_006545889.1| - 0.014 15.1 1.4 0.031 14.0 1.0 1.5 1 0 0 1 1 1 0 Putative redox-active protein (C_GCAxxG_C_C) Prok-RING_4 PF14447.1 gi|397781416|ref|YP_006545889.1| - 0.027 13.9 2.8 0.027 13.9 1.9 2.7 2 1 1 3 3 3 0 Prokaryotic RING finger family 4 ArfGap PF01412.13 gi|397781416|ref|YP_006545889.1| - 0.028 14.2 1.1 0.051 13.3 0.7 1.3 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf zf-C3HC4_3 PF13920.1 gi|397781416|ref|YP_006545889.1| - 0.17 11.6 9.3 0.056 13.1 2.4 2.9 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_2 PF13923.1 gi|397781416|ref|YP_006545889.1| - 5.8 7.0 8.6 3.4 7.7 3.1 2.7 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) ATPase_gene1 PF09527.5 gi|397781417|ref|YP_006545890.1| - 0.00079 19.1 4.4 0.001 18.8 3.0 1.2 1 0 0 1 1 1 1 Putative F0F1-ATPase subunit (ATPase_gene1) DUF1275 PF06912.6 gi|397781417|ref|YP_006545890.1| - 0.024 13.8 0.6 0.029 13.5 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) Presenilin PF01080.12 gi|397781417|ref|YP_006545890.1| - 0.052 12.3 0.3 0.054 12.3 0.2 1.0 1 0 0 1 1 1 0 Presenilin EmrE PF13536.1 gi|397781417|ref|YP_006545890.1| - 0.11 12.7 1.2 0.14 12.3 0.8 1.2 1 0 0 1 1 1 0 Multidrug resistance efflux transporter T2SM PF04612.7 gi|397781417|ref|YP_006545890.1| - 0.17 11.6 0.4 0.2 11.4 0.3 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M UPF0154 PF03672.8 gi|397781417|ref|YP_006545890.1| - 0.46 10.1 2.8 0.99 9.0 0.4 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) DUF2273 PF10031.4 gi|397781417|ref|YP_006545890.1| - 0.66 9.6 4.5 0.29 10.7 0.8 1.9 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) FtsX PF02687.16 gi|397781417|ref|YP_006545890.1| - 0.99 9.1 7.7 0.81 9.4 0.4 2.0 1 1 1 2 2 2 0 FtsX-like permease family DUF1049 PF06305.6 gi|397781417|ref|YP_006545890.1| - 2.6 7.6 5.3 6 6.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) ABM PF03992.11 gi|397781418|ref|YP_006545891.1| - 8.4e-12 44.9 0.1 1.1e-11 44.6 0.1 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase E1-E2_ATPase PF00122.15 gi|397781419|ref|YP_006545892.1| - 1.2e-55 188.0 0.5 1.2e-55 188.0 0.3 2.6 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|397781419|ref|YP_006545892.1| - 4.3e-23 82.8 0.2 1e-22 81.6 0.1 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|397781419|ref|YP_006545892.1| - 1.7e-17 63.5 8.6 1.7e-17 63.5 5.9 3.1 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.21 gi|397781419|ref|YP_006545892.1| - 3.6e-17 61.5 0.0 9.2e-17 60.2 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|397781419|ref|YP_006545892.1| - 3.4e-14 53.4 0.1 8.7e-14 52.1 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|397781419|ref|YP_006545892.1| - 1e-09 38.1 0.0 2.3e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|397781419|ref|YP_006545892.1| - 9.3e-06 25.3 0.4 0.0043 16.6 0.2 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase PAS_9 PF13426.1 gi|397781420|ref|YP_006545893.1| - 7.7e-43 145.1 0.0 4.9e-12 46.1 0.0 6.5 6 0 0 6 6 6 6 PAS domain PAS_4 PF08448.5 gi|397781420|ref|YP_006545893.1| - 4.1e-42 142.6 7.8 2e-19 69.6 0.1 6.7 6 0 0 6 6 6 5 PAS fold PAS_8 PF13188.1 gi|397781420|ref|YP_006545893.1| - 3e-34 115.7 0.6 7.2e-08 32.0 0.0 5.7 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|397781420|ref|YP_006545893.1| - 1.6e-29 101.9 0.1 5.1e-10 39.1 0.0 6.7 6 1 0 6 6 6 4 PAS fold PAS_3 PF08447.6 gi|397781420|ref|YP_006545893.1| - 2.8e-24 85.0 2.8 8.7e-12 44.9 0.0 5.5 5 1 0 5 5 5 3 PAS fold PAS_10 PF13596.1 gi|397781420|ref|YP_006545893.1| - 1e-06 28.9 0.0 0.00064 19.9 0.0 3.7 4 0 0 4 4 4 1 PAS domain PAS_7 PF12860.2 gi|397781420|ref|YP_006545893.1| - 5.1e-06 26.4 2.5 0.13 12.3 0.0 6.2 6 2 0 6 6 6 1 PAS fold HisKA PF00512.20 gi|397781420|ref|YP_006545893.1| - 0.0015 18.4 0.2 0.0015 18.4 0.2 4.3 4 1 0 4 4 4 1 His Kinase A (phospho-acceptor) domain DUF1579 PF07617.6 gi|397781422|ref|YP_006545895.1| - 0.01 15.4 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1579) PQQ_2 PF13360.1 gi|397781423|ref|YP_006545896.1| - 6.7e-32 110.8 10.6 4e-10 39.5 0.2 4.3 1 1 2 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|397781423|ref|YP_006545896.1| - 1e-28 97.3 19.4 8.6e-08 31.3 0.3 8.2 8 0 0 8 8 8 6 PQQ enzyme repeat PQQ_3 PF13570.1 gi|397781423|ref|YP_006545896.1| - 3.4e-13 49.3 32.9 2.2e-06 27.7 0.2 9.4 8 1 0 8 8 8 4 PQQ-like domain Cupredoxin_1 PF13473.1 gi|397781423|ref|YP_006545896.1| - 4.9e-12 45.6 0.1 2.2e-11 43.5 0.0 2.0 1 1 1 2 2 2 1 Cupredoxin-like domain DUF4399 PF14347.1 gi|397781423|ref|YP_006545896.1| - 8.7e-08 32.0 0.2 3.6e-07 30.1 0.1 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4399) Copper-bind PF00127.15 gi|397781423|ref|YP_006545896.1| - 1.8e-05 24.9 1.8 4.7e-05 23.5 0.1 2.6 3 0 0 3 3 3 1 Copper binding proteins, plastocyanin/azurin family COX2 PF00116.15 gi|397781423|ref|YP_006545896.1| - 0.093 12.5 0.0 0.28 11.0 0.0 1.8 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|397781424|ref|YP_006545897.1| - 1.3e-12 47.4 1.2 1.8e-11 43.8 0.0 2.5 2 1 1 3 3 3 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|397781424|ref|YP_006545897.1| - 5.3e-09 36.1 1.7 7.7e-08 32.4 0.1 2.5 1 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family DUF4399 PF14347.1 gi|397781424|ref|YP_006545897.1| - 3e-07 30.3 0.2 7.2e-07 29.1 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4399) Cu-oxidase_2 PF07731.9 gi|397781424|ref|YP_006545897.1| - 0.019 14.4 2.1 5.2 6.5 0.0 3.0 2 1 0 2 2 2 0 Multicopper oxidase DUF1034 PF06280.7 gi|397781424|ref|YP_006545897.1| - 0.033 14.6 1.7 0.033 14.6 1.2 2.6 2 2 0 2 2 2 0 Fn3-like domain (DUF1034) Cu-oxidase_3 PF07732.10 gi|397781424|ref|YP_006545897.1| - 0.44 10.2 6.2 0.88 9.3 1.5 2.7 2 1 0 2 2 2 0 Multicopper oxidase DUF488 PF04343.8 gi|397781425|ref|YP_006545898.1| - 2.5e-34 118.2 1.2 2.8e-34 118.1 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 MerR-DNA-bind PF09278.6 gi|397781425|ref|YP_006545898.1| - 0.023 15.1 0.6 0.048 14.0 0.2 1.7 1 1 0 1 1 1 0 MerR, DNA binding DUF3416 PF11896.3 gi|397781425|ref|YP_006545898.1| - 0.088 12.7 1.0 0.11 12.4 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3416) Prismane PF03063.15 gi|397781426|ref|YP_006545899.1| - 1.4e-124 416.2 0.0 1.7e-124 416.0 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family TrmB PF01978.14 gi|397781427|ref|YP_006545900.1| - 1.5e-20 72.6 0.0 2.3e-20 72.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|397781427|ref|YP_006545900.1| - 0.049 13.2 0.0 0.15 11.6 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF2115 PF09888.4 gi|397781428|ref|YP_006545901.1| - 1.2e-46 158.7 0.0 1.7e-46 158.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) DUF2180 PF09947.4 gi|397781428|ref|YP_006545901.1| - 0.1 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2180) Cupin_2 PF07883.6 gi|397781429|ref|YP_006545902.1| - 1.7e-15 56.2 0.3 2.6e-15 55.6 0.1 1.4 2 0 0 2 2 2 1 Cupin domain Cupin_1 PF00190.17 gi|397781429|ref|YP_006545902.1| - 4.7e-05 22.8 0.0 6.6e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|397781429|ref|YP_006545902.1| - 7.3e-05 22.4 0.0 9.5e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Pirin_C PF05726.8 gi|397781429|ref|YP_006545902.1| - 0.012 15.6 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain AraC_binding_2 PF14525.1 gi|397781429|ref|YP_006545902.1| - 0.13 11.8 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_7 PF12973.2 gi|397781429|ref|YP_006545902.1| - 0.14 11.9 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain Fer4_5 PF12801.2 gi|397781430|ref|YP_006545903.1| - 4.1e-14 52.1 10.4 1.6e-10 40.5 0.4 5.2 5 1 1 6 6 6 2 4Fe-4S binding domain Fer4 PF00037.22 gi|397781430|ref|YP_006545903.1| - 4.4e-10 38.7 26.1 4.1e-05 22.9 2.3 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|397781430|ref|YP_006545903.1| - 1.8e-08 34.5 18.2 5.3e-05 23.4 10.2 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|397781430|ref|YP_006545903.1| - 1.4e-07 31.1 20.2 5.8e-07 29.2 9.8 3.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397781430|ref|YP_006545903.1| - 1.5e-07 30.9 28.3 4.8e-05 23.0 2.8 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|397781430|ref|YP_006545903.1| - 6.5e-07 29.2 17.2 0.00028 20.8 10.1 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|397781430|ref|YP_006545903.1| - 1.2e-06 28.7 21.0 0.0004 20.7 10.4 3.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|397781430|ref|YP_006545903.1| - 2.6e-06 27.5 31.9 0.028 14.9 3.5 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|397781430|ref|YP_006545903.1| - 3.1e-05 23.7 16.5 0.001 18.8 1.7 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397781430|ref|YP_006545903.1| - 4.7e-05 24.0 16.9 0.1 13.3 0.8 4.0 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|397781430|ref|YP_006545903.1| - 0.00023 20.8 4.0 0.00023 20.8 2.8 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|397781430|ref|YP_006545903.1| - 0.00056 20.0 4.1 0.00056 20.0 2.8 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|397781430|ref|YP_006545903.1| - 0.0015 18.9 26.1 0.034 14.5 2.9 4.0 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|397781430|ref|YP_006545903.1| - 0.0044 17.3 21.3 0.24 11.7 2.2 3.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397781430|ref|YP_006545903.1| - 0.43 11.1 10.5 0.82 10.2 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Cupin_2 PF07883.6 gi|397781431|ref|YP_006545904.1| - 4.8e-12 45.1 0.0 6.1e-12 44.8 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|397781431|ref|YP_006545904.1| - 2.9e-07 30.2 0.0 3.9e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain EutQ PF06249.7 gi|397781431|ref|YP_006545904.1| - 0.0011 18.5 0.0 0.0011 18.4 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_3 PF05899.7 gi|397781431|ref|YP_006545904.1| - 0.0013 18.0 0.0 0.0019 17.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|397781431|ref|YP_006545904.1| - 0.0016 18.1 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Cupin DUF1498 PF07385.7 gi|397781431|ref|YP_006545904.1| - 0.038 13.1 0.0 0.047 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1498) DUF1255 PF06865.6 gi|397781431|ref|YP_006545904.1| - 0.053 13.7 0.0 0.098 12.9 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1255) Asp_Arg_Hydrox PF05118.10 gi|397781431|ref|YP_006545904.1| - 0.099 12.4 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase MFS_1 PF07690.11 gi|397781433|ref|YP_006545906.1| - 6.8e-56 189.4 77.1 4.9e-47 160.3 33.6 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|397781433|ref|YP_006545906.1| - 2.5e-08 32.9 14.9 2.5e-08 32.9 10.3 2.7 3 0 0 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|397781433|ref|YP_006545906.1| - 2.2e-07 29.4 5.2 2.2e-07 29.4 3.6 2.7 2 1 1 3 3 3 2 Transmembrane secretion effector PUCC PF03209.10 gi|397781433|ref|YP_006545906.1| - 0.037 12.7 22.8 0.45 9.1 3.5 2.8 2 1 0 2 2 2 0 PUCC protein OATP PF03137.15 gi|397781433|ref|YP_006545906.1| - 0.04 11.9 12.4 0.074 11.1 2.0 2.5 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family OKR_DC_1 PF01276.15 gi|397781434|ref|YP_006545907.1| - 6.9e-163 542.0 0.0 8.4e-163 541.7 0.0 1.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain OKR_DC_1_C PF03711.10 gi|397781434|ref|YP_006545907.1| - 1.7e-41 141.5 0.0 3.4e-41 140.5 0.0 1.5 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, C-terminal domain OKR_DC_1_N PF03709.10 gi|397781434|ref|YP_006545907.1| - 3.2e-29 101.3 0.0 3.2e-28 98.1 0.0 2.2 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain Beta_elim_lyase PF01212.16 gi|397781434|ref|YP_006545907.1| - 0.0009 18.4 0.0 0.0017 17.5 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|397781434|ref|YP_006545907.1| - 0.0024 16.9 0.1 0.0041 16.2 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|397781434|ref|YP_006545907.1| - 0.031 13.2 0.0 0.071 12.0 0.0 1.6 1 0 0 1 1 1 0 Aminotransferase class I and II Glyco_hydro_57 PF03065.10 gi|397781435|ref|YP_006545908.1| - 2.2e-29 102.5 0.0 1.2e-28 100.0 0.0 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Glycos_transf_1 PF00534.15 gi|397781436|ref|YP_006545909.1| - 2e-30 105.4 0.0 3.1e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|397781436|ref|YP_006545909.1| - 3.8e-16 59.6 0.0 2.5e-15 56.9 0.0 2.2 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|397781436|ref|YP_006545909.1| - 9.6e-16 58.0 0.1 2.2e-15 56.8 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|397781436|ref|YP_006545909.1| - 9.6e-16 58.1 0.0 2.3e-15 56.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|397781436|ref|YP_006545909.1| - 2.4e-15 56.6 0.6 7.6e-07 28.8 0.1 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.1 gi|397781436|ref|YP_006545909.1| - 1.3e-09 38.1 0.0 2.9e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|397781436|ref|YP_006545909.1| - 0.16 11.7 0.0 0.37 10.6 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase 4-like Alpha-amylase_C PF02806.13 gi|397781437|ref|YP_006545910.1| - 1.3e-21 76.5 0.0 3.1e-21 75.3 0.0 1.7 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain CBM_48 PF02922.13 gi|397781437|ref|YP_006545910.1| - 3.5e-17 62.2 0.1 3.4e-16 59.0 0.0 2.5 2 0 0 2 2 2 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.19 gi|397781437|ref|YP_006545910.1| - 7.1e-16 58.4 0.0 3.5e-10 39.7 0.1 2.9 2 1 1 3 3 3 2 Alpha amylase, catalytic domain Glyco_hydro_70 PF02324.11 gi|397781437|ref|YP_006545910.1| - 0.011 13.5 0.0 0.02 12.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 70 DUF3536 PF12055.3 gi|397781438|ref|YP_006545911.1| - 9.9e-74 248.0 0.0 1.8e-73 247.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3536) Glyco_hydro_57 PF03065.10 gi|397781438|ref|YP_006545911.1| - 3.8e-18 65.5 0.0 3.7e-17 62.2 0.0 2.2 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|397781438|ref|YP_006545911.1| - 0.01 15.4 0.0 0.32 10.6 0.0 2.7 2 1 0 3 3 3 0 Polysaccharide deacetylase Glyco_hydro_77 PF02446.12 gi|397781439|ref|YP_006545912.1| - 1.5e-141 472.3 0.0 1.9e-141 472.0 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase RNA_bind PF08675.6 gi|397781439|ref|YP_006545912.1| - 0.018 15.0 0.1 0.099 12.6 0.0 2.1 2 0 0 2 2 2 0 RNA binding domain DUF3417 PF11897.3 gi|397781441|ref|YP_006545914.1| - 2.4e-40 137.1 0.5 1.2e-39 134.9 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.15 gi|397781441|ref|YP_006545914.1| - 6.5e-24 83.8 0.0 2.2e-19 68.8 0.0 3.3 2 1 0 2 2 2 2 Carbohydrate phosphorylase DUF2795 PF11387.3 gi|397781442|ref|YP_006545915.1| - 3.9e-38 129.0 1.6 4.4e-18 64.8 0.2 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2795) TBPIP PF07106.8 gi|397781442|ref|YP_006545915.1| - 0.028 13.9 0.2 0.75 9.3 0.0 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_6 PF01418.12 gi|397781442|ref|YP_006545915.1| - 0.14 11.9 0.1 24 4.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family Ish1 PF10281.4 gi|397781442|ref|YP_006545915.1| - 0.15 12.1 0.5 1.8 8.7 0.1 2.7 3 0 0 3 3 3 0 Putative stress-responsive nuclear envelope protein DUF2121 PF09894.4 gi|397781443|ref|YP_006545916.1| - 2.1e-64 216.3 0.8 2.3e-64 216.2 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) eIF-1a PF01176.14 gi|397781444|ref|YP_006545917.1| - 8.6e-21 73.1 0.6 1e-20 72.8 0.4 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RRM_1 PF00076.17 gi|397781445|ref|YP_006545918.1| - 5.6e-23 80.3 0.2 6.5e-23 80.1 0.1 1.1 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_6 PF14259.1 gi|397781445|ref|YP_006545918.1| - 9.2e-20 70.4 0.0 1.1e-19 70.1 0.0 1.1 1 0 0 1 1 1 1 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) RRM_5 PF13893.1 gi|397781445|ref|YP_006545918.1| - 4.3e-18 64.9 0.0 5.2e-18 64.6 0.0 1.1 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_3 PF08777.6 gi|397781445|ref|YP_006545918.1| - 0.00034 20.4 0.0 0.00039 20.2 0.0 1.1 1 0 0 1 1 1 1 RNA binding motif Calcipressin PF04847.7 gi|397781445|ref|YP_006545918.1| - 0.037 13.6 0.0 0.042 13.4 0.0 1.1 1 0 0 1 1 1 0 Calcipressin GSDH PF07995.6 gi|397781446|ref|YP_006545919.1| - 7.1e-31 107.4 0.3 1.7e-17 63.5 0.0 2.3 2 0 0 2 2 2 2 Glucose / Sorbosone dehydrogenase Big_2 PF02368.13 gi|397781448|ref|YP_006545921.1| - 1.5e-91 300.3 90.3 3.6e-15 55.6 8.0 10.4 10 0 0 10 10 10 9 Bacterial Ig-like domain (group 2) PD40 PF07676.7 gi|397781448|ref|YP_006545921.1| - 7.5e-06 25.4 8.0 0.033 13.8 0.1 4.9 5 0 0 5 5 5 3 WD40-like Beta Propeller Repeat NlpE PF04170.7 gi|397781448|ref|YP_006545921.1| - 1.2 9.5 5.8 5.9 7.3 0.0 3.8 4 0 0 4 4 4 0 NlpE N-terminal domain CTDII PF01556.13 gi|397781449|ref|YP_006545922.1| - 6.7e-30 102.8 0.3 1.9e-19 69.3 0.0 3.5 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|397781449|ref|YP_006545922.1| - 3.9e-28 96.9 2.0 6.2e-28 96.3 1.4 1.3 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|397781449|ref|YP_006545922.1| - 1.7e-12 47.2 18.1 3.1e-12 46.3 12.5 1.5 1 0 0 1 1 1 1 DnaJ central domain Lar_restr_allev PF14354.1 gi|397781449|ref|YP_006545922.1| - 0.098 12.9 10.4 30 4.9 7.2 2.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar FdhE PF04216.7 gi|397781449|ref|YP_006545922.1| - 0.18 11.5 11.6 0.032 13.9 5.2 1.7 2 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation zf-TFIIB PF13453.1 gi|397781449|ref|YP_006545922.1| - 0.69 9.1 11.6 0.14 11.3 1.5 3.2 3 0 0 3 3 3 0 Transcription factor zinc-finger DZR PF12773.2 gi|397781449|ref|YP_006545922.1| - 0.84 9.5 13.6 3.4 7.5 2.1 2.1 1 1 2 3 3 3 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|397781449|ref|YP_006545922.1| - 1.6 8.5 8.4 5.7 6.7 0.9 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|397781449|ref|YP_006545922.1| - 4.5 6.9 10.4 1.8 8.2 0.8 2.4 1 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family HSP70 PF00012.15 gi|397781450|ref|YP_006545923.1| - 4.7e-244 810.8 19.2 8.4e-215 714.2 8.1 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|397781450|ref|YP_006545923.1| - 4.8e-20 71.4 3.6 1.6e-19 69.7 2.5 1.8 1 1 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.11 gi|397781450|ref|YP_006545923.1| - 0.0024 17.5 0.0 0.0057 16.3 0.0 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.1 gi|397781450|ref|YP_006545923.1| - 0.012 15.3 10.7 0.086 12.6 4.1 4.4 2 1 0 2 2 2 0 Cell division protein FtsA Hydantoinase_A PF01968.13 gi|397781450|ref|YP_006545923.1| - 0.039 13.0 0.2 0.039 13.0 0.1 2.5 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase MtrB PF05440.7 gi|397781450|ref|YP_006545923.1| - 0.087 12.8 0.2 0.5 10.4 0.0 2.3 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B Arr-ms PF12120.3 gi|397781450|ref|YP_006545923.1| - 0.13 12.1 0.2 0.42 10.5 0.1 1.9 1 1 0 1 1 1 0 Rifampin ADP-ribosyl transferase DUF3347 PF11827.3 gi|397781450|ref|YP_006545923.1| - 6.6 6.6 11.7 19 5.1 7.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) GrpE PF01025.14 gi|397781451|ref|YP_006545924.1| - 1.7e-45 154.5 0.8 2e-45 154.3 0.5 1.0 1 0 0 1 1 1 1 GrpE Myosin_tail_1 PF01576.14 gi|397781451|ref|YP_006545924.1| - 0.0022 15.8 0.9 0.0022 15.8 0.6 1.6 1 1 1 2 2 2 1 Myosin tail IncA PF04156.9 gi|397781451|ref|YP_006545924.1| - 0.037 13.6 1.1 0.042 13.4 0.8 1.2 1 0 0 1 1 1 0 IncA protein ApoLp-III PF07464.6 gi|397781451|ref|YP_006545924.1| - 0.05 13.6 1.4 0.067 13.2 1.0 1.2 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) PilJ PF13675.1 gi|397781451|ref|YP_006545924.1| - 0.072 13.4 0.7 0.2 11.9 0.4 1.7 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term RE_XamI PF09572.5 gi|397781451|ref|YP_006545924.1| - 0.11 11.9 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 XamI restriction endonuclease DUF3829 PF12889.2 gi|397781451|ref|YP_006545924.1| - 1.1 8.4 4.5 0.65 9.1 0.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) AICARFT_IMPCHas PF01808.13 gi|397781452|ref|YP_006545925.1| - 3.8e-104 348.1 0.6 4.6e-104 347.8 0.4 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.17 gi|397781452|ref|YP_006545925.1| - 2e-22 78.9 0.0 5.1e-22 77.6 0.0 1.8 1 0 0 1 1 1 1 MGS-like domain DUF4013 PF13197.1 gi|397781453|ref|YP_006545926.1| - 2.5e-05 23.7 0.3 3.2e-05 23.3 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) DUF4013 PF13197.1 gi|397781454|ref|YP_006545927.1| - 1.4e-31 109.0 29.2 1.4e-31 109.0 20.2 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) HMGL-like PF00682.14 gi|397781455|ref|YP_006545928.1| - 8.3e-65 218.7 0.7 8.3e-65 218.7 0.5 1.9 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|397781455|ref|YP_006545928.1| - 9.2e-34 116.0 0.9 1.6e-33 115.3 0.7 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Hepsin-SRCR PF09272.5 gi|397781455|ref|YP_006545928.1| - 0.075 13.2 0.0 0.19 11.9 0.0 1.7 1 0 0 1 1 1 0 Hepsin, SRCR TPP_enzyme_N PF02776.13 gi|397781456|ref|YP_006545929.1| - 3.9e-61 205.4 0.1 7e-60 201.4 0.1 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|397781456|ref|YP_006545929.1| - 7.3e-56 187.9 0.0 7.2e-55 184.7 0.0 2.4 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|397781456|ref|YP_006545929.1| - 1.1e-51 174.2 0.2 1.8e-51 173.5 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|397781456|ref|YP_006545929.1| - 0.055 12.9 0.1 0.098 12.1 0.0 1.4 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DUF3400 PF11880.3 gi|397781456|ref|YP_006545929.1| - 0.09 12.0 0.6 0.34 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3400) ALS_ss_C PF10369.4 gi|397781457|ref|YP_006545930.1| - 3.5e-31 106.7 0.7 3.5e-31 106.7 0.5 1.7 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|397781457|ref|YP_006545930.1| - 4.3e-20 71.2 0.2 5.6e-19 67.7 0.0 2.2 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|397781457|ref|YP_006545930.1| - 3.4e-13 48.7 1.2 3.5e-12 45.5 0.1 2.6 2 1 1 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|397781457|ref|YP_006545930.1| - 6.9e-05 23.1 0.1 0.00014 22.1 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.1 gi|397781457|ref|YP_006545930.1| - 0.0022 17.6 0.4 2 8.1 0.1 2.9 2 2 0 2 2 2 2 ACT domain YbbR PF07949.7 gi|397781457|ref|YP_006545930.1| - 0.0034 17.4 1.3 0.0073 16.4 0.3 1.9 2 0 0 2 2 2 1 YbbR-like protein Sigma_1s PF02454.11 gi|397781457|ref|YP_006545930.1| - 0.008 15.9 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Sigma 1s protein G8 PF10162.4 gi|397781457|ref|YP_006545930.1| - 0.064 13.0 0.0 0.16 11.7 0.0 1.6 2 0 0 2 2 2 0 G8 domain SSF PF00474.12 gi|397781459|ref|YP_006545932.1| - 8.8e-61 205.7 29.0 1.1e-60 205.3 20.1 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family SNF PF00209.13 gi|397781460|ref|YP_006545933.1| - 1.5e-69 234.8 35.5 2e-36 125.5 12.9 2.1 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF4519 PF15012.1 gi|397781460|ref|YP_006545933.1| - 0.017 14.9 1.6 0.048 13.5 1.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) DUF4501 PF14946.1 gi|397781460|ref|YP_006545933.1| - 1.7 8.1 3.2 25 4.3 1.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4501) FGase PF05013.7 gi|397781461|ref|YP_006545934.1| - 1.7e-53 181.7 0.0 2e-53 181.5 0.0 1.0 1 0 0 1 1 1 1 N-formylglutamate amidohydrolase Helicase_C PF00271.26 gi|397781462|ref|YP_006545935.1| - 1.5e-23 82.4 0.0 5.3e-22 77.4 0.0 3.0 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|397781462|ref|YP_006545935.1| - 3.9e-18 65.4 0.0 7e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|397781462|ref|YP_006545935.1| - 9.3e-05 22.3 0.0 0.0011 18.7 0.0 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SKI PF01202.17 gi|397781462|ref|YP_006545935.1| - 0.0097 15.7 0.0 0.023 14.5 0.0 1.6 1 0 0 1 1 1 1 Shikimate kinase PspC PF04024.7 gi|397781463|ref|YP_006545936.1| - 1.2e-25 88.7 2.1 1.3e-25 88.5 1.5 1.0 1 0 0 1 1 1 1 PspC domain DUF2456 PF10445.4 gi|397781463|ref|YP_006545936.1| - 0.7 9.8 4.6 0.53 10.2 2.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2456) DegT_DnrJ_EryC1 PF01041.12 gi|397781464|ref|YP_006545937.1| - 9.2e-73 245.3 0.1 8.5e-61 205.9 0.1 2.1 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|397781464|ref|YP_006545937.1| - 8.3e-06 24.7 0.0 1.3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|397781464|ref|YP_006545937.1| - 1.1e-05 24.5 0.0 1.7e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Acetyltransf_6 PF13480.1 gi|397781465|ref|YP_006545938.1| - 1.4e-13 51.0 0.0 2.5e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|397781465|ref|YP_006545938.1| - 0.012 14.2 0.0 3.7 6.1 0.0 2.9 3 0 0 3 3 3 0 FemAB family DUF2179 PF10035.4 gi|397781466|ref|YP_006545939.1| - 4.1e-08 32.6 0.0 9.4e-08 31.5 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2179) Na_H_Exchanger PF00999.16 gi|397781467|ref|YP_006545940.1| - 3.9e-63 213.2 55.0 5.1e-63 212.8 38.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|397781467|ref|YP_006545940.1| - 1.8e-26 92.4 0.2 4.7e-26 91.0 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|397781467|ref|YP_006545940.1| - 5.1e-14 51.6 0.1 1.3e-13 50.3 0.0 1.7 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_2 PF03446.10 gi|397781467|ref|YP_006545940.1| - 0.0011 18.8 0.1 0.0023 17.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|397781467|ref|YP_006545940.1| - 0.0027 17.7 0.1 0.0087 16.0 0.0 1.8 2 0 0 2 2 2 1 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|397781467|ref|YP_006545940.1| - 0.016 14.3 0.0 0.036 13.2 0.0 1.6 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|397781467|ref|YP_006545940.1| - 0.023 14.8 0.2 0.43 10.7 0.0 2.3 1 1 1 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain 3HCDH_N PF02737.13 gi|397781467|ref|YP_006545940.1| - 0.051 13.2 0.1 0.29 10.7 0.0 2.1 2 1 1 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HycI PF01750.13 gi|590000730|ref|YP_006545941.2| - 9.4e-15 54.3 0.1 1.2e-14 54.0 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Pneumo_matrix PF03393.11 gi|590000730|ref|YP_006545941.2| - 0.17 10.7 0.0 0.21 10.4 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus matrix protein RimK PF08443.6 gi|397781468|ref|YP_006545942.1| - 2.1e-25 89.3 0.0 4.6e-25 88.2 0.0 1.5 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|397781468|ref|YP_006545942.1| - 6.7e-12 44.8 0.0 2.1e-10 40.0 0.0 2.1 1 1 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|397781468|ref|YP_006545942.1| - 9e-10 38.5 0.0 2.6e-09 37.0 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|397781468|ref|YP_006545942.1| - 2.3e-09 37.2 0.0 3.3e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|397781468|ref|YP_006545942.1| - 0.004 15.9 0.0 0.31 9.7 0.0 2.0 1 1 1 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_YheCD PF14398.1 gi|397781468|ref|YP_006545942.1| - 0.018 13.8 0.0 0.049 12.4 0.0 1.6 2 0 0 2 2 2 0 YheC/D like ATP-grasp ATP-grasp PF02222.17 gi|397781468|ref|YP_006545942.1| - 0.067 12.5 0.0 0.094 12.0 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain UPF0058 PF01893.11 gi|397781470|ref|YP_006545943.1| - 5.2e-21 74.4 0.2 6.2e-21 74.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DDE_Tnp_1 PF01609.16 gi|397781471|ref|YP_006545944.1| - 0.0072 15.8 0.1 0.019 14.5 0.1 1.7 1 1 0 1 1 1 1 Transposase DDE domain Toprim_4 PF13662.1 gi|397781472|ref|YP_006545945.1| - 8.3e-09 35.3 0.1 2.6e-08 33.7 0.1 1.9 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|397781472|ref|YP_006545945.1| - 0.0076 16.2 0.3 0.036 14.0 0.1 2.2 1 1 0 1 1 1 1 Toprim domain DUF3804 PF12707.2 gi|397781472|ref|YP_006545945.1| - 0.12 11.9 0.1 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3804) DUF167 PF02594.11 gi|397781473|ref|YP_006545946.1| - 4.8e-20 71.2 0.0 5.9e-20 70.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Amidohydro_4 PF13147.1 gi|397781474|ref|YP_006545947.1| - 4.3e-17 63.0 13.6 1.5e-16 61.2 9.4 1.8 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|397781474|ref|YP_006545947.1| - 1e-09 38.5 0.0 2.1e-09 37.4 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|397781474|ref|YP_006545947.1| - 8.8e-09 35.0 0.6 2.4e-08 33.6 0.4 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|397781474|ref|YP_006545947.1| - 0.05 12.8 7.6 2.5 7.2 3.5 2.5 1 1 1 2 2 2 0 Amidohydrolase family DUF2156 PF09924.4 gi|397781475|ref|YP_006545948.1| - 7.2e-47 159.6 0.0 8.2e-47 159.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2156) DUF1601 PF07671.6 gi|397781475|ref|YP_006545948.1| - 0.03 13.9 0.1 0.11 12.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1601) Acetyltransf_1 PF00583.19 gi|397781476|ref|YP_006545949.1| - 3.2e-14 52.7 0.0 4.5e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|397781476|ref|YP_006545949.1| - 1.9e-12 47.1 0.0 2.6e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|397781476|ref|YP_006545949.1| - 3.7e-09 36.7 0.0 4.9e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|397781476|ref|YP_006545949.1| - 1e-06 28.6 0.0 1.4e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|397781476|ref|YP_006545949.1| - 0.0031 17.2 0.0 0.0053 16.4 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|397781476|ref|YP_006545949.1| - 0.01 15.9 0.1 0.012 15.7 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|397781476|ref|YP_006545949.1| - 0.035 13.9 0.0 0.055 13.3 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase MerT PF02411.10 gi|397781476|ref|YP_006545949.1| - 0.089 12.6 0.3 0.12 12.1 0.2 1.2 1 0 0 1 1 1 0 MerT mercuric transport protein AIRS_C PF02769.17 gi|397781477|ref|YP_006545950.1| - 6.5e-31 107.4 1.4 9.9e-31 106.8 1.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|397781477|ref|YP_006545950.1| - 5e-17 61.9 0.9 1.2e-16 60.6 0.6 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain HypA PF01155.14 gi|397781478|ref|YP_006545951.1| - 8.6e-24 83.4 0.4 9.8e-24 83.2 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|397781478|ref|YP_006545951.1| - 0.6 9.8 3.4 8 6.2 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HupF_HypC PF01455.13 gi|397781479|ref|YP_006545952.1| - 1.8e-21 75.8 0.1 2.3e-21 75.5 0.1 1.1 1 0 0 1 1 1 1 HupF/HypC family Methyltransf_11 PF08241.7 gi|397781480|ref|YP_006545953.1| - 2.9e-19 69.3 0.0 4.4e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|397781480|ref|YP_006545953.1| - 2.2e-14 53.6 0.0 3.4e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397781480|ref|YP_006545953.1| - 1.3e-13 50.9 0.0 1.8e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397781480|ref|YP_006545953.1| - 6.4e-12 46.0 0.0 8.8e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397781480|ref|YP_006545953.1| - 8.6e-10 38.9 0.0 1.3e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397781480|ref|YP_006545953.1| - 1.2e-09 37.9 0.0 1.7e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|397781480|ref|YP_006545953.1| - 1.3e-09 38.0 1.3 2.9e-09 36.9 0.9 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|397781480|ref|YP_006545953.1| - 4.6e-06 25.9 0.0 6.4e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TPMT PF05724.6 gi|397781480|ref|YP_006545953.1| - 4.9e-05 22.8 0.0 0.00075 18.9 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.9 gi|397781480|ref|YP_006545953.1| - 0.00026 20.4 0.0 0.00033 20.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|397781480|ref|YP_006545953.1| - 0.0014 18.0 0.0 0.002 17.5 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) DUF3419 PF11899.3 gi|397781480|ref|YP_006545953.1| - 0.0025 16.6 0.0 1.4 7.5 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3419) TehB PF03848.9 gi|397781480|ref|YP_006545953.1| - 0.015 14.4 0.0 0.022 13.9 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB CMAS PF02353.15 gi|397781480|ref|YP_006545953.1| - 0.078 12.0 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|397781480|ref|YP_006545953.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW GAF PF01590.21 gi|397781481|ref|YP_006545954.1| - 0.13 12.4 0.1 0.34 11.0 0.1 1.7 1 0 0 1 1 1 0 GAF domain SelR PF01641.13 gi|397781483|ref|YP_006545956.1| - 7.6e-51 170.9 0.0 9e-51 170.7 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|397781483|ref|YP_006545956.1| - 0.022 14.7 0.1 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly CARDB PF07705.6 gi|397781484|ref|YP_006545957.1| - 0.046 13.7 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 CARDB Phage_Coat_A PF05357.8 gi|397781484|ref|YP_006545957.1| - 0.19 11.3 1.2 0.41 10.2 0.8 1.6 1 1 0 1 1 1 0 Phage Coat Protein A FMN_red PF03358.10 gi|397781485|ref|YP_006545958.1| - 6e-31 107.0 0.0 8.8e-31 106.4 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|397781485|ref|YP_006545958.1| - 1.1e-14 54.4 0.0 1.8e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin-like fold HEAT_2 PF13646.1 gi|397781486|ref|YP_006545959.1| - 6.2e-142 462.2 87.8 1.2e-20 73.5 1.2 13.9 3 3 9 17 17 17 16 HEAT repeats HEAT PF02985.17 gi|397781486|ref|YP_006545959.1| - 1.6e-67 217.5 24.8 0.0039 17.1 0.0 22.2 21 2 2 23 23 22 16 HEAT repeat HEAT_PBS PF03130.11 gi|397781486|ref|YP_006545959.1| - 2.5e-57 185.5 117.7 8.6e-06 25.7 0.1 26.6 27 2 0 27 27 26 15 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|397781486|ref|YP_006545959.1| - 3.1e-39 132.5 79.3 0.0027 18.1 0.1 21.0 17 5 5 22 22 21 15 HEAT-like repeat Arm PF00514.18 gi|397781486|ref|YP_006545959.1| - 2.6e-34 115.8 13.4 0.0024 17.6 0.0 19.6 22 1 1 23 23 23 6 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|397781486|ref|YP_006545959.1| - 2.5e-08 32.7 0.0 0.045 12.0 0.0 6.0 5 2 0 5 5 5 2 Adaptin N terminal region Aconitase_B_N PF11791.3 gi|397781486|ref|YP_006545959.1| - 2.6e-07 30.5 9.3 1.8 8.3 0.0 8.8 8 2 3 12 12 12 3 Aconitate B N-terminal domain Vac14_Fab1_bd PF12755.2 gi|397781486|ref|YP_006545959.1| - 5.6e-07 29.8 0.0 0.25 11.7 0.0 7.2 5 2 2 8 8 7 1 Vacuolar 14 Fab1-binding region Cnd1 PF12717.2 gi|397781486|ref|YP_006545959.1| - 2.2e-05 24.3 0.2 0.65 9.8 0.0 6.8 7 3 1 8 8 8 1 non-SMC mitotic condensation complex subunit 1 Vitellogenin_N PF01347.17 gi|397781486|ref|YP_006545959.1| - 0.0047 15.2 0.0 1.5 6.9 0.0 3.4 3 1 0 4 4 4 1 Lipoprotein amino terminal region RasGEF_N_2 PF14663.1 gi|397781486|ref|YP_006545959.1| - 0.017 15.0 0.0 59 3.6 0.0 5.3 5 3 2 7 7 7 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain DUF4042 PF13251.1 gi|397781486|ref|YP_006545959.1| - 0.091 12.2 0.1 51 3.2 0.0 5.1 6 1 0 6 6 6 0 Domain of unknown function (DUF4042) Cohesin_HEAT PF12765.2 gi|397781486|ref|YP_006545959.1| - 0.22 11.5 9.3 2.9 7.9 0.1 5.5 5 0 0 5 5 5 0 HEAT repeat associated with sister chromatid cohesion Cnd3 PF12719.2 gi|397781486|ref|YP_006545959.1| - 0.46 9.4 0.1 13 4.6 0.0 3.6 5 1 0 5 5 5 0 Nuclear condensing complex subunits, C-term domain IFRD PF05004.8 gi|397781486|ref|YP_006545959.1| - 2.9 6.8 5.9 24 3.8 0.2 4.5 3 1 2 5 5 5 0 Interferon-related developmental regulator (IFRD) Glycos_transf_1 PF00534.15 gi|397781488|ref|YP_006545961.1| - 1.1e-31 109.5 0.0 1.6e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397781488|ref|YP_006545961.1| - 8e-19 68.1 0.1 2.2e-18 66.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|397781488|ref|YP_006545961.1| - 1.4e-16 61.0 0.8 5.7e-16 59.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|397781488|ref|YP_006545961.1| - 5.5e-13 49.0 0.1 9.9e-13 48.1 0.1 1.4 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|397781488|ref|YP_006545961.1| - 4.9e-12 45.8 0.0 7e-06 25.7 0.0 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.1 gi|397781488|ref|YP_006545961.1| - 3.7e-09 36.7 0.0 8.8e-09 35.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Mut7-C PF01927.11 gi|397781489|ref|YP_006545962.1| - 7.3e-12 45.4 0.5 7.9e-12 45.3 0.3 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF164 PF02591.10 gi|397781489|ref|YP_006545962.1| - 0.0039 16.9 1.0 0.011 15.5 0.7 1.6 1 1 0 1 1 1 1 Putative zinc ribbon domain UPF0547 PF10571.4 gi|397781489|ref|YP_006545962.1| - 0.23 11.1 1.3 10 5.9 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-met PF12874.2 gi|397781489|ref|YP_006545962.1| - 0.39 10.9 1.6 12 6.2 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of C2H2 type Mut7-C PF01927.11 gi|397781490|ref|YP_006545963.1| - 1.2e-20 73.9 0.0 1.4e-20 73.7 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain Radical_SAM PF04055.16 gi|397781491|ref|YP_006545964.1| - 1.3e-17 64.5 0.0 5.6e-17 62.4 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|397781491|ref|YP_006545964.1| - 0.00026 21.1 0.9 0.0004 20.5 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.1 gi|397781491|ref|YP_006545964.1| - 0.0091 15.1 0.5 0.0091 15.1 0.4 2.3 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|397781491|ref|YP_006545964.1| - 0.071 12.7 0.1 0.071 12.7 0.0 3.1 3 0 0 3 3 3 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|397781491|ref|YP_006545964.1| - 0.1 11.9 3.8 1.2 8.5 0.0 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding DZR PF12773.2 gi|397781491|ref|YP_006545964.1| - 0.1 12.4 0.1 0.1 12.4 0.1 3.1 3 0 0 3 3 3 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|397781491|ref|YP_006545964.1| - 0.11 12.0 4.4 0.55 9.7 0.0 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DUF1272 PF06906.6 gi|397781491|ref|YP_006545964.1| - 0.38 10.6 6.3 12 5.8 0.0 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF1272) zf-TFIIB PF13453.1 gi|397781491|ref|YP_006545964.1| - 0.67 9.1 4.5 1 8.6 1.2 2.7 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.1 gi|397781491|ref|YP_006545964.1| - 2.3 7.8 10.3 0.18 11.3 0.3 3.4 3 1 0 3 3 3 0 zinc-ribbon domain AA_kinase PF00696.23 gi|397781492|ref|YP_006545965.1| - 3.4e-25 88.9 2.5 4.1e-25 88.7 1.7 1.1 1 0 0 1 1 1 1 Amino acid kinase family TMP-TENI PF02581.12 gi|397781492|ref|YP_006545965.1| - 0.035 13.2 0.5 2.5 7.1 0.0 2.9 3 0 0 3 3 3 0 Thiamine monophosphate synthase/TENI HhH-GPD PF00730.20 gi|397781493|ref|YP_006545966.1| - 7.7e-26 90.4 0.0 1.1e-25 89.9 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|397781493|ref|YP_006545966.1| - 1.4e-09 37.0 0.0 3e-09 36.0 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|397781493|ref|YP_006545966.1| - 1.1e-06 28.5 0.3 2.8e-06 27.2 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|397781493|ref|YP_006545966.1| - 0.00074 19.6 0.0 0.0032 17.6 0.0 2.0 1 1 0 1 1 1 1 Helix-hairpin-helix domain Nitroreductase PF00881.19 gi|397781494|ref|YP_006545967.1| - 3.1e-28 98.6 0.1 5.5e-28 97.8 0.0 1.4 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|397781494|ref|YP_006545967.1| - 0.0028 16.8 0.0 0.031 13.4 0.0 2.2 2 1 0 2 2 2 1 Putative TM nitroreductase DUF1894 PF08979.6 gi|397781495|ref|YP_006545968.1| - 2.3e-24 85.2 0.0 2.9e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) PhoU_div PF01865.11 gi|397781496|ref|YP_006545969.1| - 3.1e-19 69.0 9.1 3.4e-19 68.8 6.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 tRNA-synt_1e PF01406.14 gi|397781496|ref|YP_006545969.1| - 0.022 13.8 0.4 0.028 13.5 0.3 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Glu-tRNAGln PF02686.10 gi|397781496|ref|YP_006545969.1| - 0.1 12.4 0.2 0.41 10.4 0.0 2.1 2 0 0 2 2 2 0 Glu-tRNAGln amidotransferase C subunit GatB_Yqey PF02637.13 gi|397781496|ref|YP_006545969.1| - 0.16 11.7 1.3 0.26 10.9 0.8 1.6 1 1 0 1 1 1 0 GatB domain PHO4 PF01384.15 gi|397781497|ref|YP_006545970.1| - 1.3e-93 313.2 49.0 7.3e-60 202.3 16.3 2.1 2 0 0 2 2 2 2 Phosphate transporter family RsbRD_N PF14361.1 gi|397781497|ref|YP_006545970.1| - 0.013 15.9 0.0 0.04 14.3 0.0 1.7 2 0 0 2 2 2 0 RsbT co-antagonist protein rsbRD N-terminal domain Aminotran_5 PF00266.14 gi|397781498|ref|YP_006545971.1| - 6.8e-124 413.3 0.0 9.9e-124 412.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V PAPS_reduct PF01507.14 gi|397781498|ref|YP_006545971.1| - 3.8e-33 114.7 0.0 6.1e-33 114.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family DegT_DnrJ_EryC1 PF01041.12 gi|397781498|ref|YP_006545971.1| - 8e-09 35.0 0.1 1.3e-08 34.2 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|397781498|ref|YP_006545971.1| - 6.3e-07 28.8 0.0 1.1e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|397781498|ref|YP_006545971.1| - 6.7e-07 28.5 0.0 1.8e-06 27.1 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class I and II Pyridoxal_deC PF00282.14 gi|397781498|ref|YP_006545971.1| - 0.012 14.1 0.0 0.02 13.3 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain ATP_bind_4 PF01902.12 gi|397781498|ref|YP_006545971.1| - 0.049 13.0 0.0 0.086 12.1 0.0 1.3 1 0 0 1 1 1 0 ATP-binding region FdhD-NarQ PF02634.10 gi|397781499|ref|YP_006545972.1| - 1.3e-51 175.3 0.1 1.6e-51 175.0 0.1 1.1 1 0 0 1 1 1 1 FdhD/NarQ family YoaP PF14268.1 gi|397781499|ref|YP_006545972.1| - 0.1 11.8 0.0 0.22 10.7 0.0 1.6 1 0 0 1 1 1 0 YoaP-like DUF4260 PF14079.1 gi|397781499|ref|YP_006545972.1| - 0.16 11.8 0.0 0.35 10.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4260) Na_H_Exchanger PF00999.16 gi|397781500|ref|YP_006545973.1| - 5e-70 235.9 56.9 5.7e-70 235.7 39.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Rubrerythrin PF02915.12 gi|397781501|ref|YP_006545974.1| - 3e-18 66.4 2.6 7.7e-18 65.1 1.8 1.6 1 1 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|397781501|ref|YP_006545974.1| - 4.1e-08 33.4 0.3 8.4e-06 26.0 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.1 gi|397781501|ref|YP_006545974.1| - 1.2e-05 25.2 0.0 2.4e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 Ferritin-like domain DUF3231 PF11553.3 gi|397781501|ref|YP_006545974.1| - 0.0015 18.0 0.1 0.032 13.7 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3231) DUF3066 PF11266.3 gi|397781501|ref|YP_006545974.1| - 0.0056 16.4 0.2 0.97 9.0 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3066) DUF892 PF05974.7 gi|397781501|ref|YP_006545974.1| - 0.0059 16.4 0.3 1.3 8.8 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF892) Ferritin PF00210.19 gi|397781501|ref|YP_006545974.1| - 0.0097 15.6 1.3 0.24 11.1 0.2 2.2 2 0 0 2 2 2 1 Ferritin-like domain COQ7 PF03232.8 gi|397781501|ref|YP_006545974.1| - 0.025 14.0 0.5 2.7 7.4 0.0 2.1 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 dsDNA_bind PF01984.15 gi|397781501|ref|YP_006545974.1| - 0.11 12.4 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Double-stranded DNA-binding domain DUF2335 PF10097.4 gi|397781501|ref|YP_006545974.1| - 0.3 10.7 3.8 5.3 6.7 0.2 2.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2335) tRNA-Thr_ED PF08915.6 gi|397781502|ref|YP_006545975.1| - 1.8e-53 180.1 0.0 3.1e-53 179.4 0.0 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|397781502|ref|YP_006545975.1| - 1.3e-20 73.6 0.0 2.1e-20 73.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|397781502|ref|YP_006545975.1| - 1e-16 60.6 0.2 2e-16 59.6 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain Glycoamylase PF10091.4 gi|397781502|ref|YP_006545975.1| - 0.011 14.8 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 Putative glucoamylase dUTPase PF00692.14 gi|397781503|ref|YP_006545976.1| - 1.1e-12 47.5 0.0 1.5e-12 47.0 0.0 1.3 1 1 0 1 1 1 1 dUTPase DCD PF06559.6 gi|397781503|ref|YP_006545976.1| - 2.9e-11 42.3 0.0 3.7e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) SpoU_methylase PF00588.14 gi|397781504|ref|YP_006545977.1| - 1.7e-27 96.0 0.0 2.3e-27 95.6 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family PcrB PF01884.12 gi|397781505|ref|YP_006545978.1| - 3e-60 203.3 0.0 3.5e-60 203.1 0.0 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.15 gi|397781505|ref|YP_006545978.1| - 0.017 13.6 0.1 0.031 12.8 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|397781505|ref|YP_006545978.1| - 0.02 14.1 0.0 0.068 12.4 0.0 1.8 2 0 0 2 2 2 0 Histidine biosynthesis protein Topoisom_bac PF01131.15 gi|397781506|ref|YP_006545979.1| - 2e-114 382.5 0.0 2.8e-114 382.1 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|397781506|ref|YP_006545979.1| - 8.4e-18 64.1 0.2 2.2e-17 62.8 0.1 1.8 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.1 gi|397781506|ref|YP_006545979.1| - 6.3e-11 42.2 6.2 1.3e-05 25.3 0.1 5.0 5 0 0 5 5 5 2 Helix-hairpin-helix domain zf-C4_Topoisom PF01396.14 gi|397781506|ref|YP_006545979.1| - 3.4e-09 36.0 0.5 7.6e-09 34.9 0.3 1.6 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Cdd1 PF11731.3 gi|397781506|ref|YP_006545979.1| - 0.00012 21.8 0.0 0.0049 16.7 0.0 2.9 3 0 0 3 3 3 1 Pathogenicity locus HHH PF00633.18 gi|397781506|ref|YP_006545979.1| - 0.00031 20.2 0.1 0.0013 18.2 0.1 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif TfoX_C PF04994.8 gi|397781506|ref|YP_006545979.1| - 0.099 12.5 0.0 3.2 7.7 0.0 2.9 2 1 0 2 2 2 0 TfoX C-terminal domain GatB_N PF02934.10 gi|397781507|ref|YP_006545980.1| - 4.8e-113 376.8 0.0 6.1e-113 376.4 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|397781507|ref|YP_006545980.1| - 3.8e-39 133.7 0.0 5.6e-39 133.2 0.0 1.2 1 0 0 1 1 1 1 GatB domain Amidase PF01425.16 gi|397781508|ref|YP_006545981.1| - 8e-147 489.6 0.2 9.7e-147 489.3 0.2 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|397781509|ref|YP_006545982.1| - 7.1e-18 64.1 0.0 1.1e-17 63.5 0.0 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit SinI PF08671.5 gi|397781509|ref|YP_006545982.1| - 0.13 11.6 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 Anti-repressor SinI DUF1127 PF06568.6 gi|397781509|ref|YP_006545982.1| - 0.17 11.3 0.1 0.41 10.0 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1127) Asn_synthase PF00733.16 gi|397781510|ref|YP_006545983.1| - 7.5e-33 114.0 0.0 3.5e-32 111.9 0.0 1.8 1 1 0 1 1 1 1 Asparagine synthase Gate PF07670.9 gi|397781511|ref|YP_006545984.1| - 1e-14 54.3 26.3 3.8e-09 36.4 6.5 3.1 2 1 1 3 3 3 2 Nucleoside recognition HCV_NS4a PF01006.15 gi|397781511|ref|YP_006545984.1| - 0.51 9.9 4.4 2 7.9 3.1 2.1 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a MarR_2 PF12802.2 gi|397781512|ref|YP_006545985.1| - 0.00013 21.5 0.0 0.00029 20.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|397781512|ref|YP_006545985.1| - 0.00032 20.2 0.0 0.00057 19.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|397781512|ref|YP_006545985.1| - 0.0023 17.5 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|397781512|ref|YP_006545985.1| - 0.0078 15.9 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Mga PF05043.8 gi|397781512|ref|YP_006545985.1| - 0.0089 16.2 0.0 0.016 15.4 0.0 1.3 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_28 PF13518.1 gi|397781512|ref|YP_006545985.1| - 0.0095 15.9 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Crp PF00325.15 gi|397781512|ref|YP_006545985.1| - 0.0096 15.3 0.2 0.051 13.0 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_6 PF01418.12 gi|397781512|ref|YP_006545985.1| - 0.017 14.8 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_29 PF13551.1 gi|397781512|ref|YP_006545985.1| - 0.045 13.8 0.0 0.1 12.7 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn helix TrmB PF01978.14 gi|397781512|ref|YP_006545985.1| - 0.081 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB LacI PF00356.16 gi|397781512|ref|YP_006545985.1| - 0.081 12.5 0.1 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family GntR PF00392.16 gi|397781512|ref|YP_006545985.1| - 0.13 11.6 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|397781512|ref|YP_006545985.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|397781512|ref|YP_006545985.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain PRiA4_ORF3 PF07929.6 gi|397781513|ref|YP_006545986.1| - 0.00021 20.7 0.0 0.00028 20.3 0.0 1.2 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein DZR PF12773.2 gi|397781513|ref|YP_006545986.1| - 0.044 13.5 4.4 0.1 12.4 3.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-SNAP50_C PF12251.3 gi|397781513|ref|YP_006545986.1| - 0.082 12.2 3.7 0.14 11.5 2.6 1.3 1 0 0 1 1 1 0 snRNA-activating protein of 50kDa MW C terminal UPF0167 PF03691.9 gi|397781513|ref|YP_006545986.1| - 0.16 11.3 3.0 0.88 8.9 1.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0167) Herpes_UL92 PF03048.9 gi|397781513|ref|YP_006545986.1| - 0.18 11.3 2.2 0.31 10.5 1.6 1.4 1 0 0 1 1 1 0 UL92 family ABC_tran PF00005.22 gi|397781515|ref|YP_006545988.1| - 3.4e-28 98.6 0.0 6e-28 97.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397781515|ref|YP_006545988.1| - 3.7e-13 50.1 0.0 1.4e-08 35.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|397781515|ref|YP_006545988.1| - 9.1e-07 29.3 0.0 1.4e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|397781515|ref|YP_006545988.1| - 0.00018 20.9 0.2 0.00036 20.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|397781515|ref|YP_006545988.1| - 0.00042 20.6 0.1 0.00065 20.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|397781515|ref|YP_006545988.1| - 0.014 15.5 0.4 0.16 12.1 0.3 2.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|397781515|ref|YP_006545988.1| - 0.014 14.6 0.0 0.27 10.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|397781515|ref|YP_006545988.1| - 0.036 13.8 0.2 0.14 11.9 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_16 PF13191.1 gi|397781515|ref|YP_006545988.1| - 0.04 13.8 0.1 0.093 12.7 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.1 gi|397781515|ref|YP_006545988.1| - 0.04 12.9 0.0 0.44 9.5 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain FluMu_gp41 PF10109.4 gi|397781515|ref|YP_006545988.1| - 0.047 13.6 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 Mu-like prophage FluMu protein gp41 AAA_22 PF13401.1 gi|397781515|ref|YP_006545988.1| - 0.048 13.7 0.0 0.13 12.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|397781515|ref|YP_006545988.1| - 0.049 12.7 0.0 0.11 11.6 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.17 gi|397781515|ref|YP_006545988.1| - 0.077 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain G-alpha PF00503.15 gi|397781515|ref|YP_006545988.1| - 0.096 11.3 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit ABC2_membrane PF01061.19 gi|397781516|ref|YP_006545989.1| - 9.2e-30 103.3 14.1 9.2e-30 103.3 9.8 1.8 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|397781516|ref|YP_006545989.1| - 1.1e-16 60.8 20.6 1.1e-16 60.8 14.3 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|397781516|ref|YP_006545989.1| - 0.00052 18.9 17.8 0.00052 18.9 12.4 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|397781516|ref|YP_006545989.1| - 0.00056 19.1 20.2 0.00079 18.6 14.0 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|397781516|ref|YP_006545989.1| - 0.18 11.0 19.6 0.37 10.0 13.6 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein TroA PF01297.12 gi|397781517|ref|YP_006545990.1| - 2.1e-10 40.2 0.0 3.5e-10 39.5 0.0 1.5 1 1 0 1 1 1 1 Periplasmic solute binding protein family ABC-3 PF00950.12 gi|397781518|ref|YP_006545991.1| - 2.4e-42 145.0 35.8 2.9e-42 144.7 24.8 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|397781518|ref|YP_006545991.1| - 7.5e-08 31.5 38.2 2.5e-07 29.8 26.5 1.7 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|397781519|ref|YP_006545992.1| - 5.3e-27 94.7 0.0 7e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397781519|ref|YP_006545992.1| - 6e-10 39.5 0.1 0.00017 21.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|397781519|ref|YP_006545992.1| - 2.5e-05 24.7 0.0 3.5e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|397781519|ref|YP_006545992.1| - 7.8e-05 22.0 0.2 0.065 12.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|397781519|ref|YP_006545992.1| - 0.0011 18.8 0.2 0.037 13.9 0.1 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|397781519|ref|YP_006545992.1| - 0.0017 17.5 0.8 0.99 8.3 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain Zeta_toxin PF06414.7 gi|397781519|ref|YP_006545992.1| - 0.0023 17.0 0.0 0.0035 16.4 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|397781519|ref|YP_006545992.1| - 0.0027 17.1 0.0 0.0062 16.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|397781519|ref|YP_006545992.1| - 0.0052 16.3 0.0 0.012 15.1 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|397781519|ref|YP_006545992.1| - 0.012 14.9 0.1 0.048 13.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|397781519|ref|YP_006545992.1| - 0.02 14.6 0.7 0.053 13.2 0.2 2.0 2 0 0 2 2 1 0 Part of AAA domain ArgK PF03308.11 gi|397781519|ref|YP_006545992.1| - 0.023 13.4 0.2 0.95 8.1 0.1 2.1 1 1 1 2 2 2 0 ArgK protein cobW PF02492.14 gi|397781519|ref|YP_006545992.1| - 0.023 14.1 0.1 0.048 13.1 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|397781519|ref|YP_006545992.1| - 0.024 13.5 0.0 0.038 12.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.24 gi|397781519|ref|YP_006545992.1| - 0.028 14.6 0.2 1.1 9.4 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|397781519|ref|YP_006545992.1| - 0.052 13.2 0.1 0.12 12.0 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|397781519|ref|YP_006545992.1| - 0.055 13.4 0.3 0.17 11.8 0.0 1.8 2 1 1 3 3 2 0 AAA ATPase domain NTPase_1 PF03266.10 gi|397781519|ref|YP_006545992.1| - 0.055 13.1 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 NTPase UPF0079 PF02367.12 gi|397781519|ref|YP_006545992.1| - 0.063 12.9 0.1 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|397781519|ref|YP_006545992.1| - 0.065 12.6 0.3 1.2 8.4 0.2 2.1 1 1 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|397781519|ref|YP_006545992.1| - 0.066 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|397781519|ref|YP_006545992.1| - 0.069 13.2 0.2 0.2 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AFG1_ATPase PF03969.11 gi|397781519|ref|YP_006545992.1| - 0.07 11.9 0.2 0.36 9.5 0.0 1.9 2 0 0 2 2 2 0 AFG1-like ATPase ABC_ATPase PF09818.4 gi|397781519|ref|YP_006545992.1| - 0.12 10.9 0.1 1.2 7.6 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|397781519|ref|YP_006545992.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_33 PF13671.1 gi|397781519|ref|YP_006545992.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain FmdE PF02663.9 gi|397781520|ref|YP_006545993.1| - 2.7e-16 59.6 0.0 3.2e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon PEGA PF08308.6 gi|397781522|ref|YP_006545995.1| - 3.2e-82 270.3 26.2 1.9e-17 62.7 0.3 7.1 7 0 0 7 7 7 5 PEGA domain PKD PF00801.15 gi|397781522|ref|YP_006545995.1| - 9.9e-62 204.6 56.2 1.1e-17 63.5 3.5 7.8 7 1 1 8 8 8 4 PKD domain I-set PF07679.11 gi|397781522|ref|YP_006545995.1| - 5.4e-07 29.3 0.7 1.1 9.1 0.0 4.1 3 0 0 3 3 3 3 Immunoglobulin I-set domain DUF1533 PF07550.6 gi|397781522|ref|YP_006545995.1| - 0.00015 21.7 2.4 19 5.3 0.0 5.5 5 0 0 5 5 5 1 Protein of unknown function (DUF1533) FeThRed_A PF02941.10 gi|397781522|ref|YP_006545995.1| - 0.00024 20.9 0.0 3 7.8 0.0 4.1 4 0 0 4 4 4 1 Ferredoxin thioredoxin reductase variable alpha chain Cadherin PF00028.12 gi|397781522|ref|YP_006545995.1| - 0.0031 17.7 7.3 2.5 8.4 0.2 4.4 4 0 0 4 4 4 2 Cadherin domain Y_Y_Y PF07495.8 gi|397781522|ref|YP_006545995.1| - 0.011 15.5 1.3 10 5.9 0.0 3.5 3 0 0 3 3 3 0 Y_Y_Y domain DUF3344 PF11824.3 gi|397781523|ref|YP_006545996.1| - 5.7e-107 357.1 28.4 6.1e-58 196.3 5.6 3.6 3 0 0 3 3 3 2 Protein of unknown function (DUF3344) PEGA PF08308.6 gi|397781523|ref|YP_006545996.1| - 1.5e-69 229.6 17.9 1.4e-17 63.2 0.4 6.5 5 0 0 5 5 5 4 PEGA domain CARDB PF07705.6 gi|397781523|ref|YP_006545996.1| - 2.9e-36 123.5 33.3 1.5e-19 69.8 2.3 6.4 7 0 0 7 7 7 2 CARDB NosD PF05048.8 gi|397781523|ref|YP_006545996.1| - 1.2e-33 116.2 13.0 1.2e-33 116.2 9.0 2.1 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) PKD PF00801.15 gi|397781523|ref|YP_006545996.1| - 1.1e-14 53.8 9.1 1.1e-14 53.8 6.3 7.9 5 2 2 7 7 7 1 PKD domain CarboxypepD_reg PF13620.1 gi|397781523|ref|YP_006545996.1| - 3.2e-14 52.7 49.7 1.5e-05 24.9 1.4 8.6 8 0 0 8 8 8 5 Carboxypeptidase regulatory-like domain Big_2 PF02368.13 gi|397781523|ref|YP_006545996.1| - 1.2e-13 50.7 14.9 1.2e-13 50.7 10.4 7.7 7 1 1 8 8 8 1 Bacterial Ig-like domain (group 2) Beta_helix PF13229.1 gi|397781523|ref|YP_006545996.1| - 4.5e-08 33.0 19.5 4.5e-08 33.0 13.5 4.0 4 0 0 4 4 4 1 Right handed beta helix region DUF3344 PF11824.3 gi|397781524|ref|YP_006545997.1| - 1e-47 162.7 22.0 1e-47 162.7 15.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3344) HycI PF01750.13 gi|397781525|ref|YP_006545998.1| - 1.7e-15 56.7 0.1 6.3e-08 32.2 0.0 2.1 2 0 0 2 2 2 2 Hydrogenase maturation protease ABC_tran PF00005.22 gi|397781526|ref|YP_006545999.1| - 0.072 13.3 0.0 0.074 13.3 0.0 1.2 1 0 0 1 1 1 0 ABC transporter NB-ARC PF00931.17 gi|397781526|ref|YP_006545999.1| - 0.1 11.3 0.1 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain Peripla_BP_2 PF01497.13 gi|397781528|ref|YP_006546001.1| - 3.5e-29 101.6 0.0 5.9e-29 100.8 0.0 1.4 2 0 0 2 2 2 1 Periplasmic binding protein EF-hand_5 PF13202.1 gi|397781528|ref|YP_006546001.1| - 0.027 13.8 0.0 0.32 10.4 0.0 2.6 3 0 0 3 3 3 0 EF hand FecCD PF01032.13 gi|397781529|ref|YP_006546002.1| - 7.2e-85 284.5 41.1 8.9e-85 284.2 28.5 1.1 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|397781530|ref|YP_006546003.1| - 5e-35 120.7 0.0 6.4e-35 120.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397781530|ref|YP_006546003.1| - 3.7e-11 43.5 0.0 1.2e-05 25.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397781530|ref|YP_006546003.1| - 2.8e-07 30.0 0.1 2.5e-06 26.9 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|397781530|ref|YP_006546003.1| - 9.7e-05 22.4 1.9 0.00034 20.6 1.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|397781530|ref|YP_006546003.1| - 0.00013 22.0 0.4 0.001 19.1 0.3 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|397781530|ref|YP_006546003.1| - 0.00016 21.5 0.4 0.0026 17.6 0.3 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|397781530|ref|YP_006546003.1| - 0.00025 20.5 0.0 0.00071 19.0 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|397781530|ref|YP_006546003.1| - 0.00041 19.0 0.5 0.033 12.7 0.1 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|397781530|ref|YP_006546003.1| - 0.00058 20.2 0.0 0.00067 20.0 0.0 1.3 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|397781530|ref|YP_006546003.1| - 0.0022 17.6 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|397781530|ref|YP_006546003.1| - 0.0033 17.6 0.0 0.03 14.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|397781530|ref|YP_006546003.1| - 0.0048 16.3 0.1 0.14 11.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|397781530|ref|YP_006546003.1| - 0.0049 15.9 0.0 0.26 10.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain MobB PF03205.9 gi|397781530|ref|YP_006546003.1| - 0.0062 16.2 0.0 0.014 15.0 0.0 1.6 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|397781530|ref|YP_006546003.1| - 0.0077 16.1 0.0 0.014 15.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|397781530|ref|YP_006546003.1| - 0.022 13.9 0.1 0.055 12.6 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|397781530|ref|YP_006546003.1| - 0.032 13.3 0.0 0.056 12.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.1 gi|397781530|ref|YP_006546003.1| - 0.038 13.7 0.2 0.32 10.7 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain DUF258 PF03193.11 gi|397781530|ref|YP_006546003.1| - 0.059 12.5 0.0 0.084 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|397781530|ref|YP_006546003.1| - 0.081 13.7 0.3 0.15 12.9 0.2 1.9 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|397781530|ref|YP_006546003.1| - 0.083 11.5 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein cobW PF02492.14 gi|397781530|ref|YP_006546003.1| - 0.088 12.2 0.0 0.2 11.1 0.0 1.6 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.9 gi|397781530|ref|YP_006546003.1| - 0.11 12.2 0.0 0.57 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.1 gi|397781530|ref|YP_006546003.1| - 0.2 10.0 0.0 0.54 8.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain CobN-Mg_chel PF02514.11 gi|397781531|ref|YP_006546004.1| - 0 1202.4 0.0 0 1202.2 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase VWA_2 PF13519.1 gi|397781533|ref|YP_006546006.1| - 2.1e-22 80.0 0.0 5.1e-22 78.7 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|397781533|ref|YP_006546006.1| - 2.7e-13 50.0 0.0 4.3e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|397781533|ref|YP_006546006.1| - 5.8e-11 41.9 0.6 1.1e-06 27.9 0.0 2.7 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|397781533|ref|YP_006546006.1| - 3.1e-09 36.0 2.9 4.7e-08 32.2 1.6 2.7 2 1 0 2 2 2 1 MCM2/3/5 family AAA_5 PF07728.9 gi|397781533|ref|YP_006546006.1| - 1e-08 35.0 0.2 2.7e-05 23.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Mg_chelatase_2 PF13335.1 gi|397781533|ref|YP_006546006.1| - 0.0014 19.0 3.6 0.0038 17.5 2.5 1.9 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|397781533|ref|YP_006546006.1| - 0.014 14.9 0.1 1.1 8.8 0.0 2.8 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|397781533|ref|YP_006546006.1| - 0.016 15.1 1.1 0.14 12.1 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain Sigma54_activat PF00158.21 gi|397781533|ref|YP_006546006.1| - 0.032 13.6 0.1 3.5 7.0 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA PF00004.24 gi|397781533|ref|YP_006546006.1| - 0.041 14.0 0.0 2.3 8.4 0.0 3.4 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) VWA_3 PF13768.1 gi|397781533|ref|YP_006546006.1| - 0.068 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 von Willebrand factor type A domain Lyase_1 PF00206.15 gi|397781534|ref|YP_006546007.1| - 2.1e-51 174.9 0.1 3.5e-51 174.2 0.0 1.3 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|397781534|ref|YP_006546007.1| - 2e-24 85.3 0.9 5.5e-24 83.9 0.2 2.0 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus HAMP PF00672.20 gi|397781534|ref|YP_006546007.1| - 0.26 11.5 2.5 9.5 6.4 0.0 3.0 3 0 0 3 3 3 0 HAMP domain CorA PF01544.13 gi|397781535|ref|YP_006546008.1| - 2.6e-73 246.6 0.0 3.4e-73 246.2 0.0 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF2207 PF09972.4 gi|397781535|ref|YP_006546008.1| - 0.052 12.1 0.5 0.066 11.7 0.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CbiA PF01656.18 gi|397781536|ref|YP_006546009.1| - 1.5e-23 83.2 0.0 1.8e-23 82.9 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|397781536|ref|YP_006546009.1| - 5.8e-06 25.5 0.0 9.1e-06 24.9 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_16 PF13191.1 gi|397781536|ref|YP_006546009.1| - 5.5e-05 23.2 0.0 0.00019 21.5 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain MobB PF03205.9 gi|397781536|ref|YP_006546009.1| - 0.00022 20.9 0.0 0.0016 18.1 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|397781536|ref|YP_006546009.1| - 0.00024 20.7 3.1 0.00069 19.3 0.6 2.5 2 0 0 2 2 2 1 Part of AAA domain VirC1 PF07015.6 gi|397781536|ref|YP_006546009.1| - 0.00058 19.0 0.0 0.036 13.1 0.0 2.1 2 0 0 2 2 2 1 VirC1 protein AAA_31 PF13614.1 gi|397781536|ref|YP_006546009.1| - 0.00071 19.5 0.0 0.0094 15.8 0.0 2.4 2 1 0 2 2 1 1 AAA domain ArgK PF03308.11 gi|397781536|ref|YP_006546009.1| - 0.00093 18.0 0.1 0.0015 17.3 0.1 1.2 1 0 0 1 1 1 1 ArgK protein MipZ PF09140.6 gi|397781536|ref|YP_006546009.1| - 0.0013 17.8 0.1 0.0083 15.2 0.1 1.9 2 0 0 2 2 2 1 ATPase MipZ YhjQ PF06564.7 gi|397781536|ref|YP_006546009.1| - 0.0016 17.8 0.0 0.0095 15.3 0.0 2.0 1 1 0 1 1 1 1 YhjQ protein APS_kinase PF01583.15 gi|397781536|ref|YP_006546009.1| - 0.0036 16.9 0.0 0.0051 16.4 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_30 PF13604.1 gi|397781536|ref|YP_006546009.1| - 0.0053 16.3 0.1 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|397781536|ref|YP_006546009.1| - 0.0057 16.2 0.0 0.011 15.3 0.0 1.5 1 1 1 2 2 2 1 AAA domain T2SE PF00437.15 gi|397781536|ref|YP_006546009.1| - 0.0064 15.4 0.1 0.0088 14.9 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|397781536|ref|YP_006546009.1| - 0.0069 15.7 0.1 0.039 13.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain TPP_enzyme_N PF02776.13 gi|397781536|ref|YP_006546009.1| - 0.0073 15.8 0.7 4.4 6.7 0.0 2.9 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_NifH PF00142.13 gi|397781536|ref|YP_006546009.1| - 0.012 14.7 0.0 0.022 13.9 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF2075 PF09848.4 gi|397781536|ref|YP_006546009.1| - 0.014 14.3 0.0 0.021 13.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|397781536|ref|YP_006546009.1| - 0.016 15.3 0.0 0.06 13.4 0.0 1.9 2 1 1 3 3 2 0 AAA domain Zeta_toxin PF06414.7 gi|397781536|ref|YP_006546009.1| - 0.016 14.2 0.0 0.031 13.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|397781536|ref|YP_006546009.1| - 0.031 13.7 0.0 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain KAP_NTPase PF07693.9 gi|397781536|ref|YP_006546009.1| - 0.04 12.8 0.0 0.051 12.5 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain Helicase_RecD PF05127.9 gi|397781536|ref|YP_006546009.1| - 0.073 12.7 0.0 0.091 12.3 0.0 1.3 1 0 0 1 1 1 0 Helicase Thymidylate_kin PF02223.12 gi|397781536|ref|YP_006546009.1| - 0.079 12.3 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase TrmB PF01978.14 gi|397781536|ref|YP_006546009.1| - 0.085 12.5 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AAA_17 PF13207.1 gi|397781536|ref|YP_006546009.1| - 0.09 13.6 1.8 0.17 12.7 1.3 1.8 1 1 0 1 1 1 0 AAA domain HTH_23 PF13384.1 gi|397781536|ref|YP_006546009.1| - 0.091 12.4 0.0 0.29 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain NACHT PF05729.7 gi|397781536|ref|YP_006546009.1| - 0.12 12.0 0.2 0.29 10.8 0.1 1.6 2 0 0 2 2 2 0 NACHT domain Sigma54_activat PF00158.21 gi|397781536|ref|YP_006546009.1| - 0.13 11.7 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.1 gi|397781536|ref|YP_006546009.1| - 0.13 12.5 0.3 0.25 11.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|397781536|ref|YP_006546009.1| - 0.17 10.4 0.0 0.37 9.3 0.0 1.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.12 gi|397781536|ref|YP_006546009.1| - 0.19 11.4 0.1 0.34 10.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 DUF4445 PF14574.1 gi|397781538|ref|YP_006546011.1| - 4.4e-143 476.4 0.2 5.2e-143 476.2 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer2 PF00111.22 gi|397781538|ref|YP_006546011.1| - 3.2e-10 39.6 0.6 1e-09 38.0 0.4 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain CdhD PF03599.11 gi|397781539|ref|YP_006546012.1| - 4e-89 298.7 0.0 4.9e-89 298.5 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|397781539|ref|YP_006546012.1| - 2.8e-14 52.3 2.0 4.5e-14 51.7 1.4 1.3 1 0 0 1 1 1 1 Putative Fe-S cluster CdhD PF03599.11 gi|397781540|ref|YP_006546013.1| - 6.9e-39 133.4 0.0 8e-39 133.2 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit CdhC PF03598.10 gi|397781541|ref|YP_006546014.1| - 2.7e-185 615.6 0.0 3.3e-185 615.4 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit PAS_9 PF13426.1 gi|397781542|ref|YP_006546015.1| - 2.6e-23 82.3 0.0 1.3e-06 28.7 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.1 gi|397781542|ref|YP_006546015.1| - 1.5e-20 72.2 0.3 5.3e-06 26.0 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|397781542|ref|YP_006546015.1| - 2.4e-20 72.5 0.0 6.4e-07 29.3 0.0 3.4 3 1 0 3 3 3 3 PAS fold PAS PF00989.19 gi|397781542|ref|YP_006546015.1| - 1.9e-15 56.5 0.0 0.00076 19.2 0.0 3.4 3 0 0 3 3 3 3 PAS fold HTH_11 PF08279.7 gi|397781542|ref|YP_006546015.1| - 3.2e-07 29.8 0.1 1e-05 25.1 0.0 2.6 2 0 0 2 2 2 1 HTH domain PAS_7 PF12860.2 gi|397781542|ref|YP_006546015.1| - 4.5e-07 29.8 0.1 0.0057 16.6 0.0 3.6 3 2 0 3 3 3 2 PAS fold HTH_IclR PF09339.5 gi|397781542|ref|YP_006546015.1| - 1.2e-06 27.9 0.0 2.6e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|397781542|ref|YP_006546015.1| - 7.7e-06 25.3 0.0 1.9e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|397781542|ref|YP_006546015.1| - 2.7e-05 23.6 0.0 6.7e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain PAS_10 PF13596.1 gi|397781542|ref|YP_006546015.1| - 3.9e-05 23.8 0.0 0.16 12.2 0.0 2.6 2 1 0 2 2 2 2 PAS domain HTH_5 PF01022.15 gi|397781542|ref|YP_006546015.1| - 5.8e-05 22.6 0.0 0.00014 21.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|397781542|ref|YP_006546015.1| - 0.00013 21.6 0.0 0.0003 20.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|397781542|ref|YP_006546015.1| - 0.00024 20.4 0.0 0.00057 19.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|397781542|ref|YP_006546015.1| - 0.00088 18.9 0.0 0.0022 17.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|397781542|ref|YP_006546015.1| - 0.0025 17.2 0.0 0.021 14.3 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|397781542|ref|YP_006546015.1| - 0.0032 17.1 0.0 0.0079 15.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.1 gi|397781542|ref|YP_006546015.1| - 0.0035 17.4 0.0 0.013 15.6 0.0 2.0 2 0 0 2 2 1 1 Winged helix-turn helix TetR_N PF00440.18 gi|397781542|ref|YP_006546015.1| - 0.0045 16.5 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_28 PF13518.1 gi|397781542|ref|YP_006546015.1| - 0.0063 16.5 0.0 0.015 15.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|397781542|ref|YP_006546015.1| - 0.0084 15.8 0.0 0.035 13.8 0.0 2.0 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_3 PF01381.17 gi|397781542|ref|YP_006546015.1| - 0.01 15.6 0.1 0.025 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix RPA_C PF08784.6 gi|397781542|ref|YP_006546015.1| - 0.018 15.4 0.0 0.061 13.7 0.0 1.9 2 0 0 2 2 1 0 Replication protein A C terminal KorB PF08535.5 gi|397781542|ref|YP_006546015.1| - 0.02 15.0 0.0 0.057 13.5 0.0 1.8 1 0 0 1 1 1 0 KorB domain HTH_40 PF14493.1 gi|397781542|ref|YP_006546015.1| - 0.021 15.0 0.0 0.085 13.0 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain DUF977 PF06163.6 gi|397781542|ref|YP_006546015.1| - 0.024 14.3 0.0 0.39 10.4 0.0 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) HTH_7 PF02796.10 gi|397781542|ref|YP_006546015.1| - 0.037 13.8 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase Rrf2 PF02082.15 gi|397781542|ref|YP_006546015.1| - 0.038 14.0 0.0 0.088 12.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator NUMOD1 PF07453.8 gi|397781542|ref|YP_006546015.1| - 0.041 13.7 0.0 0.12 12.3 0.0 1.8 1 0 0 1 1 1 0 NUMOD1 domain TBPIP PF07106.8 gi|397781542|ref|YP_006546015.1| - 0.048 13.1 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_45 PF14947.1 gi|397781542|ref|YP_006546015.1| - 0.05 13.4 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix Terminase_5 PF06056.7 gi|397781542|ref|YP_006546015.1| - 0.05 13.1 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) CUE PF02845.11 gi|397781542|ref|YP_006546015.1| - 0.086 12.3 0.1 2.2 7.8 0.1 2.7 3 0 0 3 3 2 0 CUE domain MarR PF01047.17 gi|397781542|ref|YP_006546015.1| - 0.095 12.4 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 MarR family Lipocalin_5 PF13924.1 gi|397781542|ref|YP_006546015.1| - 0.097 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Lipocalin-like domain HTH_36 PF13730.1 gi|397781542|ref|YP_006546015.1| - 0.12 12.5 0.0 0.39 10.8 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain DUF2316 PF10078.4 gi|397781542|ref|YP_006546015.1| - 0.13 12.2 0.0 0.49 10.4 0.0 1.9 2 0 0 2 2 1 0 Uncharacterized protein conserved in bacteria (DUF2316) Fe_dep_repress PF01325.14 gi|397781542|ref|YP_006546015.1| - 0.14 12.1 0.0 0.32 10.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Bac_luciferase PF00296.15 gi|397781543|ref|YP_006546016.1| - 4.2e-63 213.3 0.0 4.7e-63 213.1 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Cupin_2 PF07883.6 gi|397781544|ref|YP_006546017.1| - 3.4e-14 52.0 0.3 4.5e-14 51.6 0.2 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|397781544|ref|YP_006546017.1| - 8.6e-08 31.9 0.0 1.2e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|397781544|ref|YP_006546017.1| - 0.0003 20.1 0.0 0.00052 19.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DUF1498 PF07385.7 gi|397781544|ref|YP_006546017.1| - 0.0017 17.5 0.0 0.0022 17.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1498) Cupin_1 PF00190.17 gi|397781544|ref|YP_006546017.1| - 0.0035 16.7 0.0 0.005 16.2 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.2 gi|397781544|ref|YP_006546017.1| - 0.0047 16.7 0.0 0.0065 16.2 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain DUF4437 PF14499.1 gi|397781544|ref|YP_006546017.1| - 0.011 14.6 0.0 0.014 14.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4437) MannoseP_isomer PF01050.13 gi|397781544|ref|YP_006546017.1| - 0.019 14.5 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_6 PF12852.2 gi|397781544|ref|YP_006546017.1| - 0.038 13.6 0.1 0.043 13.4 0.1 1.2 1 0 0 1 1 1 0 Cupin EutQ PF06249.7 gi|397781544|ref|YP_006546017.1| - 0.12 11.8 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ CorA PF01544.13 gi|397781545|ref|YP_006546018.1| - 2.2e-78 263.2 0.0 2.9e-78 262.8 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein GoLoco PF02188.12 gi|397781545|ref|YP_006546018.1| - 0.61 9.4 3.3 6.1 6.3 0.2 2.7 2 0 0 2 2 2 0 GoLoco motif Yip1 PF04893.12 gi|397781546|ref|YP_006546019.1| - 0.0014 18.1 2.1 0.0016 17.9 1.4 1.0 1 0 0 1 1 1 1 Yip1 domain DUF3816 PF12822.2 gi|397781546|ref|YP_006546019.1| - 0.0032 17.3 2.3 0.0035 17.2 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) Colicin_V PF02674.11 gi|397781546|ref|YP_006546019.1| - 0.0074 16.1 4.3 0.0086 15.9 3.0 1.0 1 0 0 1 1 1 1 Colicin V production protein DUF1282 PF06930.7 gi|397781546|ref|YP_006546019.1| - 0.026 14.1 5.5 0.032 13.8 3.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1282) Sulfate_transp PF00916.15 gi|397781546|ref|YP_006546019.1| - 0.036 13.0 0.8 0.036 13.0 0.5 1.5 1 1 0 1 1 1 0 Sulfate transporter family CopD PF05425.8 gi|397781546|ref|YP_006546019.1| - 0.043 14.0 4.4 0.05 13.8 3.1 1.1 1 0 0 1 1 1 0 Copper resistance protein D DUF3149 PF11346.3 gi|397781546|ref|YP_006546019.1| - 0.11 12.1 2.8 0.17 11.4 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) Abhydrolase_9_N PF15420.1 gi|397781546|ref|YP_006546019.1| - 0.13 12.0 3.0 0.14 11.8 2.1 1.0 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus DUF2973 PF11189.3 gi|397781546|ref|YP_006546019.1| - 0.23 11.2 3.2 0.33 10.7 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2973) DUF1469 PF07332.6 gi|397781546|ref|YP_006546019.1| - 3.7 7.3 13.6 5.4 6.7 9.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) DUF4235 PF14019.1 gi|397781546|ref|YP_006546019.1| - 4.6 7.1 10.2 49 3.8 7.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4235) DUF4064 PF13273.1 gi|397781546|ref|YP_006546019.1| - 7.1 6.8 9.5 29 4.8 6.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF4277 PF14104.1 gi|397781547|ref|YP_006546020.1| - 7e-44 148.7 0.1 1.5e-43 147.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|397781547|ref|YP_006546020.1| - 2.6e-09 36.9 4.1 3.2e-09 36.6 0.2 2.6 2 1 0 2 2 2 1 Transposase DDE domain PGA_cap PF09587.5 gi|397781548|ref|YP_006546021.1| - 7.2e-64 215.5 0.0 8.9e-64 215.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap AMP-binding PF00501.23 gi|397781549|ref|YP_006546022.1| - 1.1e-07 30.6 0.0 1.6e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme DUF4262 PF14081.1 gi|397781549|ref|YP_006546022.1| - 0.022 14.8 0.0 0.1 12.7 0.0 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4262) Acetyltransf_6 PF13480.1 gi|397781551|ref|YP_006546024.1| - 1.7e-12 47.4 0.1 1.1e-11 44.8 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|397781551|ref|YP_006546024.1| - 0.012 14.3 0.0 0.36 9.4 0.0 2.6 3 0 0 3 3 3 0 FemAB family Acetyltransf_6 PF13480.1 gi|397781552|ref|YP_006546025.1| - 3e-10 40.2 0.0 6.5e-10 39.1 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|397781552|ref|YP_006546025.1| - 2.2e-05 23.3 0.0 0.0028 16.4 0.1 2.6 3 0 0 3 3 3 2 FemAB family Acetyltransf_6 PF13480.1 gi|397781553|ref|YP_006546026.1| - 5.9e-10 39.2 0.2 1.3e-09 38.1 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|397781553|ref|YP_006546026.1| - 0.00062 18.5 0.0 0.025 13.2 0.0 2.6 2 1 1 3 3 3 2 FemAB family AMP-binding PF00501.23 gi|397781554|ref|YP_006546027.1| - 1.2e-09 37.0 0.0 1.7e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding PF00501.23 gi|397781555|ref|YP_006546028.1| - 9e-08 30.9 0.0 1.3e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme DUF4262 PF14081.1 gi|397781555|ref|YP_006546028.1| - 0.027 14.6 0.0 0.1 12.7 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4262) Prefoldin_3 PF13758.1 gi|397781556|ref|YP_006546029.1| - 0.085 12.6 0.1 0.59 9.9 0.0 2.1 2 0 0 2 2 2 0 Prefoldin subunit GFO_IDH_MocA PF01408.17 gi|397781557|ref|YP_006546030.1| - 5.7e-26 91.3 0.0 3.4e-22 79.2 0.0 2.4 2 0 0 2 2 2 2 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.21 gi|397781557|ref|YP_006546030.1| - 1.9e-18 66.2 0.1 5e-18 64.8 0.1 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|397781557|ref|YP_006546030.1| - 3.8e-08 34.2 0.0 1e-07 32.8 0.0 1.8 1 0 0 1 1 1 1 Zinc-binding dehydrogenase GFO_IDH_MocA_C PF02894.12 gi|397781557|ref|YP_006546030.1| - 1.2e-05 25.1 0.0 2.8e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain UDPG_MGDP_dh_N PF03721.9 gi|397781557|ref|YP_006546030.1| - 1.7e-05 24.2 0.3 4.8e-05 22.8 0.2 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|397781557|ref|YP_006546030.1| - 4.5e-05 22.6 0.2 0.00013 21.1 0.1 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|397781557|ref|YP_006546030.1| - 0.00013 21.8 0.5 0.0003 20.7 0.3 1.7 1 0 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.13 gi|397781557|ref|YP_006546030.1| - 0.00097 18.8 0.2 0.0024 17.5 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|397781557|ref|YP_006546030.1| - 0.0067 16.2 0.1 0.014 15.2 0.1 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Methyltransf_18 PF12847.2 gi|397781557|ref|YP_006546030.1| - 0.022 15.3 0.2 0.062 13.8 0.1 1.8 2 0 0 2 2 2 0 Methyltransferase domain ADH_N PF08240.7 gi|397781557|ref|YP_006546030.1| - 0.03 14.1 0.8 0.13 11.9 0.5 2.1 1 1 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain Prenyltrans_1 PF13243.1 gi|397781558|ref|YP_006546031.1| - 1.5e-13 50.7 1.9 0.00045 20.2 0.2 3.3 1 1 2 3 3 3 3 Prenyltransferase-like Prenyltrans_2 PF13249.1 gi|397781558|ref|YP_006546031.1| - 1.4e-07 31.9 0.1 1.4e-06 28.6 0.0 2.3 2 0 0 2 2 2 1 Prenyltransferase-like Prenyltrans PF00432.16 gi|397781558|ref|YP_006546031.1| - 0.0019 17.6 0.0 0.0071 15.8 0.0 2.0 2 0 0 2 2 2 1 Prenyltransferase and squalene oxidase repeat Antiterm PF03589.8 gi|397781558|ref|YP_006546031.1| - 0.048 13.7 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Antitermination protein Glycos_transf_1 PF00534.15 gi|397781559|ref|YP_006546032.1| - 1.1e-23 83.5 0.0 1.4e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|397781559|ref|YP_006546032.1| - 1.3e-15 57.7 0.0 2e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|397781559|ref|YP_006546032.1| - 3.2e-15 56.6 1.1 4.7e-15 56.0 0.8 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|397781559|ref|YP_006546032.1| - 2.9e-10 40.2 0.1 5.3e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|397781559|ref|YP_006546032.1| - 1e-05 25.3 0.0 0.00029 20.5 0.0 2.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 UDPG_MGDP_dh_N PF03721.9 gi|397781560|ref|YP_006546033.1| - 2.7e-49 167.0 0.0 4.5e-49 166.3 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|397781560|ref|YP_006546033.1| - 4.6e-26 90.8 0.0 7.5e-26 90.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|397781560|ref|YP_006546033.1| - 8.6e-21 74.0 0.0 2.1e-20 72.8 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|397781560|ref|YP_006546033.1| - 4.4e-05 23.3 0.0 0.00013 21.8 0.0 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|397781560|ref|YP_006546033.1| - 0.00018 21.0 0.0 0.00028 20.3 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|397781560|ref|YP_006546033.1| - 0.012 14.5 0.6 0.022 13.6 0.4 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|397781560|ref|YP_006546033.1| - 0.016 14.9 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|397781560|ref|YP_006546033.1| - 0.045 14.1 0.1 0.18 12.1 0.1 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SPATA6 PF14909.1 gi|397781560|ref|YP_006546033.1| - 0.06 13.4 0.0 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 Spermatogenesis-assoc protein 6 2-Hacid_dh_C PF02826.14 gi|397781560|ref|YP_006546033.1| - 0.069 12.2 0.0 0.15 11.2 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GalP_UDP_transf PF01087.17 gi|397781560|ref|YP_006546033.1| - 0.075 13.0 0.1 0.22 11.5 0.0 1.7 2 0 0 2 2 2 0 Galactose-1-phosphate uridyl transferase, N-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|397781560|ref|YP_006546033.1| - 0.13 12.0 0.0 0.56 9.9 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|397781560|ref|YP_006546033.1| - 0.13 12.2 0.0 0.36 10.8 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain GPAT_N PF14829.1 gi|397781560|ref|YP_006546033.1| - 0.17 11.5 0.0 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase N-terminal Epimerase_2 PF02350.14 gi|397781561|ref|YP_006546034.1| - 1.7e-115 385.5 0.0 1.9e-115 385.3 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|397781561|ref|YP_006546034.1| - 2.6e-05 23.2 0.0 8.3e-05 21.6 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.1 gi|397781561|ref|YP_006546034.1| - 0.016 15.3 0.0 0.029 14.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Gemin6 PF06372.7 gi|397781561|ref|YP_006546034.1| - 0.14 11.4 0.0 2.1 7.6 0.0 2.2 2 0 0 2 2 2 0 Gemin6 protein Glycos_transf_2 PF00535.21 gi|397781562|ref|YP_006546035.1| - 1.4e-18 67.1 0.0 2.1e-18 66.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|397781562|ref|YP_006546035.1| - 2.8e-05 24.0 0.0 3.9e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|397781562|ref|YP_006546035.1| - 0.00026 21.2 0.0 0.00044 20.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Trep_Strep PF09605.5 gi|397781562|ref|YP_006546035.1| - 0.35 10.5 5.3 0.56 9.8 3.7 1.2 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) PseudoU_synth_1 PF01416.15 gi|397781563|ref|YP_006546036.1| - 1.3e-30 105.9 0.0 3.5e-17 62.7 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase PHP_C PF13263.1 gi|397781564|ref|YP_006546037.1| - 1.4e-17 62.9 1.3 2.9e-17 61.9 0.6 1.8 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|397781564|ref|YP_006546037.1| - 2.4e-14 53.4 0.0 3.6e-14 52.9 0.0 1.4 1 1 0 1 1 1 1 PHP domain DUF4346 PF14251.1 gi|397781565|ref|YP_006546038.1| - 9e-06 25.4 0.0 1.9e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.17 gi|397781565|ref|YP_006546038.1| - 3.5e-05 23.2 0.0 0.00024 20.5 0.0 2.3 2 1 0 2 2 2 1 Pterin binding enzyme Fasciclin PF02469.17 gi|397781566|ref|YP_006546039.1| - 2.1e-32 111.8 0.1 3.8e-32 110.9 0.1 1.4 1 0 0 1 1 1 1 Fasciclin domain Cupredoxin_1 PF13473.1 gi|397781566|ref|YP_006546039.1| - 2e-05 24.3 0.0 3.8e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|397781566|ref|YP_006546039.1| - 0.0032 17.6 1.1 0.024 14.8 0.8 2.3 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF4098 PF13345.1 gi|397781566|ref|YP_006546039.1| - 0.0037 17.1 3.9 0.0037 17.1 2.7 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4098) Prok-JAB PF14464.1 gi|397781567|ref|YP_006546040.1| - 8.3e-09 34.9 0.0 1.1e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.10 gi|397781567|ref|YP_006546040.1| - 0.066 12.8 0.1 0.077 12.6 0.1 1.4 1 1 0 1 1 1 0 RadC-like JAB domain CTP_transf_2 PF01467.21 gi|397781568|ref|YP_006546041.1| - 2.1e-16 60.3 0.0 4.5e-16 59.2 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase Sm_multidrug_ex PF06695.6 gi|397781569|ref|YP_006546042.1| - 9.9e-10 38.6 2.6 9.9e-10 38.6 1.8 2.1 1 1 1 2 2 2 1 Putative small multi-drug export protein DUF3169 PF11368.3 gi|397781569|ref|YP_006546042.1| - 4.7 6.3 5.4 1.9 7.6 1.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3169) PAS_9 PF13426.1 gi|397781570|ref|YP_006546043.1| - 6.4e-19 68.2 0.0 1.5e-09 38.1 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|397781570|ref|YP_006546043.1| - 1.8e-16 60.1 2.4 1.4e-09 37.9 0.0 3.3 3 1 0 3 3 3 2 PAS fold GAF_2 PF13185.1 gi|397781570|ref|YP_006546043.1| - 1.2e-15 58.2 0.3 9.2e-11 42.4 0.0 3.2 3 0 0 3 3 3 2 GAF domain PAS PF00989.19 gi|397781570|ref|YP_006546043.1| - 2.1e-15 56.4 0.0 1.8e-07 30.9 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|397781570|ref|YP_006546043.1| - 5.3e-13 48.3 0.1 6.8e-06 25.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.1 gi|397781570|ref|YP_006546043.1| - 1e-09 38.5 0.0 3.1e-09 37.0 0.0 1.8 2 0 0 2 2 2 1 GAF domain HisKA PF00512.20 gi|397781570|ref|YP_006546043.1| - 3.2e-08 33.4 0.1 8.8e-08 32.0 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|397781570|ref|YP_006546043.1| - 1.4e-05 25.2 0.0 3.6e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.2 gi|397781570|ref|YP_006546043.1| - 0.0027 17.7 1.8 0.38 10.7 0.0 3.6 2 2 0 2 2 2 1 PAS fold DUF3782 PF12644.2 gi|397781570|ref|YP_006546043.1| - 0.12 12.1 0.3 6.2 6.6 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) NAGidase PF07555.8 gi|397781570|ref|YP_006546043.1| - 0.14 11.0 0.1 0.24 10.2 0.1 1.3 1 0 0 1 1 1 0 beta-N-acetylglucosaminidase DUF45 PF01863.12 gi|397781572|ref|YP_006546045.1| - 6.6e-41 140.3 0.0 1.3e-40 139.4 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|397781572|ref|YP_006546045.1| - 0.0077 16.1 0.4 0.013 15.4 0.2 1.2 1 0 0 1 1 1 1 WLM domain MerR_1 PF13411.1 gi|397781573|ref|YP_006546046.1| - 0.00074 19.2 0.0 0.002 17.8 0.0 1.7 1 0 0 1 1 1 1 MerR HTH family regulatory protein KfrA_N PF11740.3 gi|397781573|ref|YP_006546046.1| - 0.0075 16.7 4.2 0.012 16.0 2.9 1.4 1 0 0 1 1 1 1 Plasmid replication region DNA-binding N-term CENP-Q PF13094.1 gi|397781573|ref|YP_006546046.1| - 0.01 15.8 1.0 0.014 15.3 0.7 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Mnd1 PF03962.10 gi|397781573|ref|YP_006546046.1| - 0.021 14.5 0.9 0.03 13.9 0.6 1.2 1 0 0 1 1 1 0 Mnd1 family SF-assemblin PF06705.6 gi|397781573|ref|YP_006546046.1| - 0.046 12.8 3.9 0.065 12.3 2.7 1.2 1 0 0 1 1 1 0 SF-assemblin/beta giardin PPDK_N PF01326.14 gi|397781573|ref|YP_006546046.1| - 0.049 12.6 0.7 0.074 12.0 0.5 1.3 1 1 0 1 1 1 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Syntaxin-6_N PF09177.6 gi|397781573|ref|YP_006546046.1| - 0.051 13.9 0.6 0.092 13.1 0.4 1.3 1 0 0 1 1 1 0 Syntaxin 6, N-terminal DUF4061 PF13270.1 gi|397781573|ref|YP_006546046.1| - 0.054 13.5 1.0 0.14 12.2 0.7 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4061) TSC22 PF01166.13 gi|397781573|ref|YP_006546046.1| - 0.077 12.9 0.2 0.18 11.8 0.1 1.6 1 0 0 1 1 1 0 TSC-22/dip/bun family RasGAP_C PF03836.10 gi|397781573|ref|YP_006546046.1| - 0.078 12.6 0.3 0.16 11.6 0.2 1.5 1 0 0 1 1 1 0 RasGAP C-terminus IncA PF04156.9 gi|397781573|ref|YP_006546046.1| - 0.091 12.3 0.7 0.13 11.8 0.5 1.2 1 0 0 1 1 1 0 IncA protein IL5 PF02025.10 gi|397781573|ref|YP_006546046.1| - 0.11 12.4 0.1 0.2 11.6 0.1 1.4 1 0 0 1 1 1 0 Interleukin 5 Med21 PF11221.3 gi|397781573|ref|YP_006546046.1| - 0.29 11.0 6.1 0.52 10.2 4.2 1.3 1 0 0 1 1 1 0 Subunit 21 of Mediator complex DUF1192 PF06698.6 gi|397781573|ref|YP_006546046.1| - 0.88 9.4 6.6 1.8 8.4 4.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1192) DUF61 PF01886.11 gi|397781576|ref|YP_006546048.1| - 5.9e-33 113.5 0.0 6.6e-33 113.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Peptidase_M28 PF04389.12 gi|590000731|ref|YP_006546049.2| - 4.3e-33 114.5 0.7 6.7e-33 113.9 0.5 1.2 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.23 gi|590000731|ref|YP_006546049.2| - 2.6e-07 30.3 0.1 4.2e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|590000731|ref|YP_006546049.2| - 0.00047 19.0 0.0 0.0036 16.1 0.0 1.9 1 1 1 2 2 2 1 M42 glutamyl aminopeptidase Nicastrin PF05450.10 gi|590000731|ref|YP_006546049.2| - 0.0079 15.4 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Nicastrin Methyltransf_18 PF12847.2 gi|397781577|ref|YP_006546050.1| - 1.3e-11 45.0 0.0 2.4e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397781577|ref|YP_006546050.1| - 6e-08 32.4 0.0 8.2e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|397781577|ref|YP_006546050.1| - 1.2e-06 28.3 0.0 1.9e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|397781577|ref|YP_006546050.1| - 3.4e-06 27.4 0.0 6.4e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|397781577|ref|YP_006546050.1| - 2.5e-05 23.7 0.0 3.8e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 RrnaAD PF00398.15 gi|397781577|ref|YP_006546050.1| - 3.1e-05 23.1 0.0 4.4e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|397781577|ref|YP_006546050.1| - 3.3e-05 23.8 0.1 5.5e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|397781577|ref|YP_006546050.1| - 6.8e-05 22.4 0.0 0.0001 21.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|397781577|ref|YP_006546050.1| - 0.00011 22.6 0.0 0.00022 21.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|397781577|ref|YP_006546050.1| - 0.00013 21.1 0.0 0.00018 20.6 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Ubie_methyltran PF01209.13 gi|397781577|ref|YP_006546050.1| - 0.00021 20.5 0.0 0.00031 19.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|397781577|ref|YP_006546050.1| - 0.00071 18.9 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|397781577|ref|YP_006546050.1| - 0.0035 16.4 0.0 0.0056 15.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|397781577|ref|YP_006546050.1| - 0.0041 17.4 0.0 0.0073 16.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|397781577|ref|YP_006546050.1| - 0.0088 14.9 0.0 0.012 14.5 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Met_10 PF02475.11 gi|397781577|ref|YP_006546050.1| - 0.026 14.0 0.0 0.065 12.8 0.0 1.5 1 1 0 1 1 1 0 Met-10+ like-protein GCD14 PF08704.5 gi|397781577|ref|YP_006546050.1| - 0.11 12.0 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit DUF938 PF06080.7 gi|397781577|ref|YP_006546050.1| - 0.16 11.4 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Gln-synt_C PF00120.19 gi|397781578|ref|YP_006546051.1| - 1.2e-44 152.4 0.0 2.1e-44 151.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|397781578|ref|YP_006546051.1| - 1.4e-11 43.7 0.0 3.4e-11 42.5 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DUF4440 PF14534.1 gi|397781580|ref|YP_006546053.1| - 4.8e-11 42.8 0.0 5.7e-11 42.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.1 gi|397781580|ref|YP_006546053.1| - 3.9e-09 36.5 0.0 5e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_2 PF12680.2 gi|397781580|ref|YP_006546053.1| - 2e-07 31.3 0.1 2.6e-07 30.9 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.1 gi|397781580|ref|YP_006546053.1| - 0.0004 20.2 0.0 0.00056 19.8 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.15 gi|397781580|ref|YP_006546053.1| - 0.043 14.1 0.0 0.058 13.7 0.0 1.3 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain LEH PF07858.7 gi|397781580|ref|YP_006546053.1| - 0.1 12.6 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Limonene-1,2-epoxide hydrolase catalytic domain SNARE_assoc PF09335.6 gi|397781582|ref|YP_006546055.1| - 3.8e-20 72.3 4.5 3.8e-20 72.3 3.1 2.1 3 0 0 3 3 3 1 SNARE associated Golgi protein DUF162 PF02589.10 gi|397781583|ref|YP_006546056.1| - 3.2e-31 108.3 0.5 3.9e-31 108.0 0.4 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 MS_channel PF00924.13 gi|397781584|ref|YP_006546057.1| - 6.5e-51 172.6 0.9 1e-50 171.9 0.7 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|397781584|ref|YP_006546057.1| - 0.0027 17.3 1.5 0.0027 17.3 1.1 2.3 2 0 0 2 2 2 1 Conserved TM helix Met_asp_mut_E PF06368.6 gi|397781584|ref|YP_006546057.1| - 0.045 11.9 0.0 0.05 11.7 0.0 1.2 1 0 0 1 1 1 0 Methylaspartate mutase E chain (MutE) ABC2_membrane_5 PF13346.1 gi|397781584|ref|YP_006546057.1| - 0.078 12.2 7.5 0.11 11.8 5.2 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein IBV_3C PF03620.8 gi|397781585|ref|YP_006546058.1| - 1 9.2 4.1 3.3 7.6 1.0 2.3 1 1 1 2 2 2 0 IBV 3C protein DUF308 PF03729.8 gi|397781585|ref|YP_006546058.1| - 1.8 8.6 34.0 4.3 7.4 9.1 2.4 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) RNB PF00773.14 gi|397781586|ref|YP_006546059.1| - 1.8e-64 218.0 0.0 2.3e-64 217.7 0.0 1.1 1 0 0 1 1 1 1 RNB domain S1 PF00575.18 gi|397781586|ref|YP_006546059.1| - 0.032 14.3 0.1 1.3 9.1 0.0 3.0 2 1 0 2 2 2 0 S1 RNA binding domain HTH_29 PF13551.1 gi|397781588|ref|YP_006546061.1| - 4.4e-24 84.7 0.0 6.6e-24 84.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|397781588|ref|YP_006546061.1| - 1.2e-09 38.8 0.0 4.9e-09 36.8 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|397781588|ref|YP_006546061.1| - 8.4e-05 22.0 0.0 0.00084 18.9 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain NUMOD1 PF07453.8 gi|397781588|ref|YP_006546061.1| - 0.041 13.7 0.2 0.1 12.4 0.0 1.8 2 0 0 2 2 2 0 NUMOD1 domain HTH_Crp_2 PF13545.1 gi|397781588|ref|YP_006546061.1| - 0.042 13.6 0.0 0.13 12.0 0.0 1.8 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|397781588|ref|YP_006546061.1| - 0.16 11.2 0.5 17 4.8 0.1 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 Calici_coat_C PF08435.6 gi|397781589|ref|YP_006546062.1| - 0.017 14.4 0.0 0.023 13.9 0.0 1.2 1 0 0 1 1 1 0 Calicivirus coat protein C-terminal DUF4366 PF14283.1 gi|397781589|ref|YP_006546062.1| - 0.06 12.7 0.0 0.14 11.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Alpha_GJ PF03229.8 gi|397781589|ref|YP_006546062.1| - 0.29 11.4 7.0 0.13 12.6 1.4 2.4 2 0 0 2 2 2 0 Alphavirus glycoprotein J SBP_bac_5 PF00496.17 gi|397781590|ref|YP_006546063.1| - 1.7e-62 211.4 0.0 2.3e-62 211.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|397781591|ref|YP_006546064.1| - 1.4e-38 132.3 13.1 1.4e-38 132.3 9.1 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TadE PF07811.7 gi|397781591|ref|YP_006546064.1| - 0.27 11.1 0.2 0.27 11.1 0.1 3.5 5 0 0 5 5 5 0 TadE-like protein BPD_transp_1 PF00528.17 gi|397781592|ref|YP_006546065.1| - 1.6e-18 66.9 11.7 1.6e-18 66.9 8.1 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|397781592|ref|YP_006546065.1| - 0.051 12.9 0.2 0.051 12.9 0.1 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|397781593|ref|YP_006546066.1| - 2.3e-25 89.5 0.0 2.9e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|397781593|ref|YP_006546066.1| - 9.4e-17 61.1 0.5 1.8e-16 60.2 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|397781593|ref|YP_006546066.1| - 1.6e-10 41.4 0.0 6.3e-07 29.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|397781593|ref|YP_006546066.1| - 0.0015 17.9 0.1 0.0029 17.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|397781593|ref|YP_006546066.1| - 0.0032 16.7 0.0 0.0053 16.0 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|397781593|ref|YP_006546066.1| - 0.0058 16.3 0.5 0.46 10.2 0.1 2.5 2 0 0 2 2 2 1 Part of AAA domain T2SE PF00437.15 gi|397781593|ref|YP_006546066.1| - 0.016 14.1 0.3 0.031 13.1 0.1 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|397781593|ref|YP_006546066.1| - 0.041 13.0 0.0 0.12 11.5 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|397781593|ref|YP_006546066.1| - 0.049 13.6 1.0 0.095 12.6 0.7 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|397781593|ref|YP_006546066.1| - 0.063 13.4 0.1 0.22 11.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|397781593|ref|YP_006546066.1| - 0.099 12.0 0.0 0.21 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|397781593|ref|YP_006546066.1| - 0.099 11.5 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DEAD PF00270.24 gi|397781593|ref|YP_006546066.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.3 1 1 0 1 1 1 0 DEAD/DEAH box helicase IstB_IS21 PF01695.12 gi|397781593|ref|YP_006546066.1| - 0.13 11.6 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.13 gi|397781593|ref|YP_006546066.1| - 0.17 11.3 0.6 0.28 10.6 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|397781594|ref|YP_006546067.1| - 3.7e-33 114.7 0.0 4.8e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397781594|ref|YP_006546067.1| - 8.7e-09 35.7 0.0 3.6e-05 23.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain oligo_HPY PF08352.7 gi|397781594|ref|YP_006546067.1| - 0.00019 21.7 0.0 0.0004 20.6 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.1 gi|397781594|ref|YP_006546067.1| - 0.001 19.1 0.3 0.0047 16.9 0.1 1.9 1 1 0 2 2 2 1 AAA ATPase domain ATP-synt_ab PF00006.20 gi|397781594|ref|YP_006546067.1| - 0.0011 18.5 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|397781594|ref|YP_006546067.1| - 0.0049 16.9 0.2 0.028 14.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|397781594|ref|YP_006546067.1| - 0.0072 15.5 0.0 0.028 13.6 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_5 PF07728.9 gi|397781594|ref|YP_006546067.1| - 0.019 14.7 0.1 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|397781594|ref|YP_006546067.1| - 0.029 14.6 0.2 0.049 13.9 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|397781594|ref|YP_006546067.1| - 0.045 13.2 0.1 0.073 12.6 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|397781594|ref|YP_006546067.1| - 0.048 13.8 0.0 0.081 13.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|397781594|ref|YP_006546067.1| - 0.062 12.4 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|397781594|ref|YP_006546067.1| - 0.069 12.7 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain KaiC PF06745.8 gi|397781594|ref|YP_006546067.1| - 0.072 12.2 0.1 0.12 11.4 0.1 1.3 1 0 0 1 1 1 0 KaiC SbcCD_C PF13558.1 gi|397781594|ref|YP_006546067.1| - 0.084 12.7 0.0 1.2 9.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|397781594|ref|YP_006546067.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|397781594|ref|YP_006546067.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|397781594|ref|YP_006546067.1| - 0.16 11.4 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF711 PF05167.7 gi|397781595|ref|YP_006546068.1| - 1.4e-178 593.6 2.5 1.8e-178 593.3 1.7 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) MinC_N PF05209.8 gi|397781595|ref|YP_006546068.1| - 0.15 11.8 0.0 0.41 10.4 0.0 1.7 1 0 0 1 1 1 0 Septum formation inhibitor MinC, N-terminal domain ACT_6 PF13740.1 gi|397781596|ref|YP_006546069.1| - 2.8e-13 49.3 0.0 3.2e-13 49.2 0.0 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|397781596|ref|YP_006546069.1| - 2.5e-09 36.4 0.0 3.1e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|397781596|ref|YP_006546069.1| - 0.00045 19.6 0.1 0.0007 19.0 0.0 1.4 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|397781596|ref|YP_006546069.1| - 0.00091 19.5 0.5 0.0013 18.9 0.3 1.2 1 0 0 1 1 1 1 ACT domain ASCH PF04266.9 gi|397781599|ref|YP_006546072.1| - 0.028 14.7 0.0 0.035 14.4 0.0 1.2 1 0 0 1 1 1 0 ASCH domain DUF3850 PF12961.2 gi|397781599|ref|YP_006546072.1| - 0.06 13.3 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3850) EVE PF01878.13 gi|397781600|ref|YP_006546073.1| - 0.0034 17.4 0.0 0.0069 16.4 0.0 1.5 1 0 0 1 1 1 1 EVE domain PIN_3 PF13470.1 gi|397781600|ref|YP_006546073.1| - 0.0064 17.1 0.1 0.012 16.2 0.1 1.5 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|397781600|ref|YP_006546073.1| - 0.0087 16.3 0.3 0.02 15.2 0.2 1.7 1 1 0 1 1 1 1 PIN domain SARA PF11409.3 gi|397781600|ref|YP_006546073.1| - 0.19 11.6 0.7 0.38 10.7 0.5 1.4 1 0 0 1 1 1 0 Smad anchor for receptor activation (SARA) PDDEXK_4 PF14281.1 gi|397781601|ref|YP_006546074.1| - 0.003 17.4 0.0 0.0032 17.3 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cupin_2 PF07883.6 gi|397781603|ref|YP_006546076.1| - 2e-08 33.5 0.0 3.1e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|397781603|ref|YP_006546076.1| - 0.0002 20.6 0.0 0.00046 19.5 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF861) DUF165 PF02592.10 gi|397781604|ref|YP_006546077.1| - 3.8e-37 127.6 7.2 3.8e-37 127.6 5.0 1.6 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 ABM PF03992.11 gi|397781605|ref|YP_006546078.1| - 0.00057 19.8 0.0 0.00071 19.5 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Tox-REase-5 PF15648.1 gi|397781605|ref|YP_006546078.1| - 0.0084 16.3 0.0 0.01 16.0 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease fold toxin 5 B1 PF02246.10 gi|397781605|ref|YP_006546078.1| - 0.13 12.1 0.1 0.22 11.3 0.1 1.4 1 1 0 1 1 1 0 Protein L b1 domain SKI PF01202.17 gi|397781606|ref|YP_006546079.1| - 8.6e-37 126.4 0.0 1.1e-36 126.1 0.0 1.1 1 0 0 1 1 1 1 Shikimate kinase AAA_17 PF13207.1 gi|397781606|ref|YP_006546079.1| - 5.6e-10 40.0 0.0 8.6e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|397781606|ref|YP_006546079.1| - 9.2e-07 29.2 0.2 3.5e-06 27.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|397781606|ref|YP_006546079.1| - 5.3e-06 26.3 0.0 1e-05 25.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|397781606|ref|YP_006546079.1| - 0.00097 19.0 0.1 0.0016 18.3 0.1 1.6 1 1 0 1 1 1 1 Cytidylate kinase-like family RuvB_N PF05496.7 gi|397781606|ref|YP_006546079.1| - 0.0018 17.4 0.0 0.0025 16.8 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|397781606|ref|YP_006546079.1| - 0.0024 17.3 0.0 0.0046 16.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|397781606|ref|YP_006546079.1| - 0.0066 16.6 0.1 0.0086 16.2 0.1 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|397781606|ref|YP_006546079.1| - 0.012 14.9 0.0 3.3 7.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain ADK PF00406.17 gi|397781606|ref|YP_006546079.1| - 0.017 14.9 0.1 0.17 11.7 0.1 2.1 1 1 0 1 1 1 0 Adenylate kinase Zeta_toxin PF06414.7 gi|397781606|ref|YP_006546079.1| - 0.056 12.5 0.0 0.095 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin CmcI PF04989.7 gi|397781606|ref|YP_006546079.1| - 0.079 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase Rad17 PF03215.10 gi|397781606|ref|YP_006546079.1| - 0.094 11.3 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|397781606|ref|YP_006546079.1| - 0.096 12.2 0.4 0.23 11.0 0.3 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|397781606|ref|YP_006546079.1| - 0.11 12.7 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_28 PF13521.1 gi|397781606|ref|YP_006546079.1| - 0.12 12.3 0.0 0.25 11.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|397781606|ref|YP_006546079.1| - 0.14 11.8 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase HxlR PF01638.12 gi|397781607|ref|YP_006546080.1| - 5e-25 86.9 0.0 6.3e-25 86.6 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.1 gi|397781607|ref|YP_006546080.1| - 2.2e-05 23.7 0.3 4.6e-05 22.7 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|397781607|ref|YP_006546080.1| - 6.4e-05 22.6 0.0 8.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|397781607|ref|YP_006546080.1| - 0.00028 20.5 0.0 0.00048 19.7 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|397781607|ref|YP_006546080.1| - 0.00028 20.5 0.0 0.0005 19.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|397781607|ref|YP_006546080.1| - 0.0039 16.9 0.0 0.0066 16.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|397781607|ref|YP_006546080.1| - 0.0047 16.9 0.0 0.007 16.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|397781607|ref|YP_006546080.1| - 0.0069 16.2 0.0 0.0087 15.8 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC GntR PF00392.16 gi|397781607|ref|YP_006546080.1| - 0.0078 15.6 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|397781607|ref|YP_006546080.1| - 0.018 14.8 0.1 0.043 13.6 0.0 1.7 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|397781607|ref|YP_006546080.1| - 0.062 13.6 0.0 0.092 13.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|397781607|ref|YP_006546080.1| - 0.08 12.7 0.0 0.13 12.0 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix LexA_DNA_bind PF01726.11 gi|397781607|ref|YP_006546080.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain NTP_transf_2 PF01909.18 gi|397781609|ref|YP_006546082.1| - 2.8e-12 46.7 0.0 3.5e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|397781609|ref|YP_006546082.1| - 0.12 11.9 0.1 0.2 11.2 0.1 1.4 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 AAA_14 PF13173.1 gi|397781610|ref|YP_006546083.1| - 1e-33 115.9 0.1 4.3e-33 113.9 0.0 2.0 2 1 1 3 3 3 1 AAA domain DUF4143 PF13635.1 gi|397781610|ref|YP_006546083.1| - 8.2e-14 51.5 0.1 1.5e-13 50.7 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|397781610|ref|YP_006546083.1| - 1.2e-07 31.7 0.1 6.7e-06 25.9 0.0 2.4 1 1 1 2 2 2 1 Archaeal ATPase AAA_25 PF13481.1 gi|397781610|ref|YP_006546083.1| - 4.7e-07 29.3 0.0 7.7e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|397781610|ref|YP_006546083.1| - 3.8e-06 27.0 0.0 0.00052 20.1 0.0 2.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|397781610|ref|YP_006546083.1| - 2.3e-05 24.4 0.0 6.2e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|397781610|ref|YP_006546083.1| - 0.0098 15.6 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain UPF0079 PF02367.12 gi|397781610|ref|YP_006546083.1| - 0.044 13.4 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|397781610|ref|YP_006546083.1| - 0.097 12.3 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Zot PF05707.7 gi|397781610|ref|YP_006546083.1| - 0.15 11.5 0.0 0.46 9.9 0.0 1.7 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) PHP PF02811.14 gi|397781611|ref|YP_006546084.1| - 1.2e-05 25.1 0.0 2.6e-05 24.0 0.0 1.5 2 0 0 2 2 2 1 PHP domain PHP_C PF13263.1 gi|397781611|ref|YP_006546084.1| - 0.002 17.5 0.0 0.0065 15.9 0.0 1.9 1 0 0 1 1 1 1 PHP-associated Cupredoxin_1 PF13473.1 gi|397781612|ref|YP_006546085.1| - 0.0011 18.7 0.1 0.0026 17.6 0.0 1.7 1 1 0 1 1 1 1 Cupredoxin-like domain DUF4453 PF14627.1 gi|397781612|ref|YP_006546085.1| - 0.019 15.0 0.2 0.038 14.1 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4453) DUF3157 PF11355.3 gi|397781612|ref|YP_006546085.1| - 2.9 7.1 8.0 1.5 8.0 3.9 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3157) GATase_3 PF07685.9 gi|397781613|ref|YP_006546086.1| - 8.1e-30 103.5 0.0 1.3e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|397781613|ref|YP_006546086.1| - 2.5e-23 82.5 0.0 4.7e-23 81.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|397781613|ref|YP_006546086.1| - 6.8e-17 61.7 0.1 1.1e-11 44.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain DJ-1_PfpI PF01965.19 gi|397781613|ref|YP_006546086.1| - 0.0085 15.5 0.1 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family DUF1611 PF07755.6 gi|397781613|ref|YP_006546086.1| - 0.019 13.6 0.2 0.048 12.3 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1611) SNO PF01174.14 gi|397781613|ref|YP_006546086.1| - 0.033 13.8 0.0 0.052 13.1 0.0 1.2 1 0 0 1 1 1 0 SNO glutamine amidotransferase family NACHT PF05729.7 gi|397781613|ref|YP_006546086.1| - 0.037 13.6 0.1 0.064 12.9 0.1 1.3 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|397781613|ref|YP_006546086.1| - 0.05 13.3 0.0 0.5 10.0 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|397781613|ref|YP_006546086.1| - 0.076 13.8 0.0 0.15 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|397781613|ref|YP_006546086.1| - 0.15 12.0 0.1 0.3 11.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain CbiM PF01891.11 gi|397781614|ref|YP_006546087.1| - 7.6e-55 185.6 22.0 8.6e-55 185.5 15.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|397781614|ref|YP_006546087.1| - 0.067 13.0 27.2 0.028 14.3 17.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3816) CbiN PF02553.10 gi|397781615|ref|YP_006546088.1| - 1.3e-22 79.5 1.1 1.7e-22 79.1 0.8 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.11 gi|397781616|ref|YP_006546089.1| - 4e-39 134.4 8.9 5.1e-39 134.1 6.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|397781617|ref|YP_006546090.1| - 2.1e-29 102.5 0.0 3.2e-29 101.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397781617|ref|YP_006546090.1| - 2.6e-20 73.5 0.0 6.3e-13 49.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|397781617|ref|YP_006546090.1| - 3.6e-07 29.6 0.0 6.3e-05 22.3 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|397781617|ref|YP_006546090.1| - 2.8e-06 26.1 0.0 0.00013 20.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|397781617|ref|YP_006546090.1| - 6.6e-06 25.4 0.0 0.003 16.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|397781617|ref|YP_006546090.1| - 2.7e-05 23.5 0.3 5e-05 22.7 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|397781617|ref|YP_006546090.1| - 0.0037 17.1 0.2 0.039 13.8 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|397781617|ref|YP_006546090.1| - 0.015 14.6 0.1 0.039 13.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|397781617|ref|YP_006546090.1| - 0.06 12.5 0.1 0.1 11.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|397781617|ref|YP_006546090.1| - 0.063 13.5 0.0 0.09 13.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|397781617|ref|YP_006546090.1| - 0.12 12.3 0.5 1.3 9.0 0.1 2.5 1 1 1 2 2 2 0 AAA ATPase domain PK PF00224.16 gi|397781618|ref|YP_006546091.1| - 7.3e-115 383.2 4.5 9.5e-115 382.9 3.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|397781618|ref|YP_006546091.1| - 8.2e-21 73.7 0.0 3.5e-20 71.6 0.0 2.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|397781618|ref|YP_006546091.1| - 0.0003 19.7 0.4 0.00083 18.2 0.3 1.8 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Cation_efflux PF01545.16 gi|397781619|ref|YP_006546092.1| - 9.5e-63 211.9 4.9 1.1e-62 211.7 3.4 1.0 1 0 0 1 1 1 1 Cation efflux family PRA1 PF03208.14 gi|397781619|ref|YP_006546092.1| - 3.4 7.0 5.3 1.1 8.5 1.4 1.8 1 1 1 2 2 2 0 PRA1 family protein Metal_resist PF13801.1 gi|397781620|ref|YP_006546093.1| - 0.015 15.2 1.0 0.015 15.2 0.7 2.8 3 0 0 3 3 3 0 Heavy-metal resistance Cauli_DNA-bind PF03310.8 gi|397781620|ref|YP_006546093.1| - 0.021 14.6 0.2 0.041 13.7 0.1 1.5 1 0 0 1 1 1 0 Caulimovirus DNA-binding protein adh_short PF00106.20 gi|397781620|ref|YP_006546093.1| - 0.058 13.3 0.5 0.13 12.2 0.3 1.5 1 0 0 1 1 1 0 short chain dehydrogenase Pinin_SDK_N PF04697.8 gi|397781620|ref|YP_006546093.1| - 0.073 13.1 0.1 0.11 12.5 0.1 1.4 1 1 0 1 1 1 0 pinin/SDK conserved region CTP_transf_1 PF01148.15 gi|590000732|ref|YP_009001445.1| - 2.6e-08 33.8 6.6 2.6e-08 33.8 4.6 2.6 1 1 1 2 2 2 1 Cytidylyltransferase family DUF1440 PF07274.7 gi|590000732|ref|YP_009001445.1| - 0.27 11.2 1.6 0.97 9.4 0.0 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1440) DUF1700 PF08006.6 gi|590000732|ref|YP_009001445.1| - 3.4 6.9 10.4 0.68 9.2 4.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1700) DUF2559 PF10832.3 gi|397781622|ref|YP_006546095.1| - 0.37 10.6 2.2 5 6.9 0.9 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF2559) Sm_multidrug_ex PF06695.6 gi|397781624|ref|YP_006546097.1| - 8.6e-11 42.0 2.9 8.6e-11 42.0 2.0 1.9 3 0 0 3 3 3 1 Putative small multi-drug export protein DUF1469 PF07332.6 gi|397781624|ref|YP_006546097.1| - 0.0031 17.2 2.4 0.0031 17.2 1.6 2.7 2 1 0 2 2 2 1 Protein of unknown function (DUF1469) Arch_ATPase PF01637.13 gi|397781625|ref|YP_006546098.1| - 2.6e-26 92.7 0.0 3.9e-26 92.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|397781625|ref|YP_006546098.1| - 5.7e-18 64.8 0.0 1.1e-17 64.0 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|397781625|ref|YP_006546098.1| - 2.2e-07 30.8 0.0 4.4e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|397781625|ref|YP_006546098.1| - 1.1e-05 25.5 0.0 2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|397781625|ref|YP_006546098.1| - 0.00027 20.9 0.1 0.0048 16.9 0.0 2.3 1 1 0 2 2 2 1 AAA ATPase domain TrmB PF01978.14 gi|397781625|ref|YP_006546098.1| - 0.16 11.6 0.0 0.84 9.3 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DEAD PF00270.24 gi|397781627|ref|YP_006546100.1| - 1e-06 28.3 0.0 6.5e-06 25.7 0.0 2.2 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|397781627|ref|YP_006546100.1| - 0.00046 19.9 0.0 0.0012 18.6 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Cas_GSU0053 PF09617.5 gi|397781629|ref|YP_006546102.1| - 2.9e-31 108.5 0.0 4.4e-31 107.9 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein GSU0053 (Cas_GSU0053) Cas_GSU0054 PF09609.5 gi|397781630|ref|YP_006546103.1| - 7e-38 130.7 2.0 1.8e-28 99.7 0.1 2.9 2 1 0 2 2 2 2 CRISPR-associated protein, GSU0054 family (Cas_GSU0054) Cas_Cas1 PF01867.11 gi|397781631|ref|YP_006546104.1| - 1e-85 287.2 0.0 1.2e-85 286.9 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Cas_Cas4 PF01930.12 gi|397781631|ref|YP_006546104.1| - 2.2e-21 76.4 0.0 3.5e-21 75.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|397781631|ref|YP_006546104.1| - 4.1e-12 46.0 0.0 7.7e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily zf-CCCH_2 PF14608.1 gi|590000734|ref|YP_009001446.1| - 0.0026 17.7 7.0 32 4.7 0.1 4.5 4 0 0 4 4 4 4 Zinc finger C-x8-C-x5-C-x3-H type HTH_16 PF12645.2 gi|590000735|ref|YP_009001447.1| - 0.14 12.0 0.1 0.28 11.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain zf-CCCH_2 PF14608.1 gi|590000736|ref|YP_009001448.1| - 0.023 14.6 3.4 36 4.5 0.1 3.5 3 0 0 3 3 3 0 Zinc finger C-x8-C-x5-C-x3-H type DUF4031 PF13223.1 gi|590000738|ref|YP_009001450.1| - 0.036 14.2 9.9 0.71 10.0 1.6 3.8 3 1 0 3 3 3 0 Protein of unknown function (DUF4031) ACTH_domain PF00976.13 gi|590000738|ref|YP_009001450.1| - 0.1 12.4 0.1 0.5 10.2 0.0 2.1 2 0 0 2 2 2 0 Corticotropin ACTH domain Xpo1 PF08389.7 gi|590000738|ref|YP_009001450.1| - 0.14 12.0 0.1 6.2 6.7 0.0 2.7 2 1 1 3 3 3 0 Exportin 1-like protein zf-CCCH_2 PF14608.1 gi|590000738|ref|YP_009001450.1| - 0.38 10.8 2.2 11 6.2 0.2 2.4 2 0 0 2 2 2 0 Zinc finger C-x8-C-x5-C-x3-H type zf-CCCH_2 PF14608.1 gi|590000739|ref|YP_009001451.1| - 0.028 14.4 6.4 61 3.8 0.0 4.3 4 0 0 4 4 4 0 Zinc finger C-x8-C-x5-C-x3-H type DUF4031 PF13223.1 gi|590000739|ref|YP_009001451.1| - 0.031 14.4 6.7 26 5.0 0.3 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF4031) zf-CCCH_2 PF14608.1 gi|590000740|ref|YP_009001452.1| - 0.42 10.7 15.9 41 4.3 0.1 5.3 5 1 1 6 6 6 0 Zinc finger C-x8-C-x5-C-x3-H type Tachystatin_B PF11478.3 gi|590000740|ref|YP_009001452.1| - 6.2 6.6 9.3 2.7 7.8 0.1 3.7 4 0 0 4 4 4 0 Antimicrobial chitin binding protein tachystatin B zf-CCCH_2 PF14608.1 gi|590000741|ref|YP_009001453.1| - 0.11 12.5 0.5 19 5.4 0.0 2.4 2 0 0 2 2 2 0 Zinc finger C-x8-C-x5-C-x3-H type zf-CCCH_2 PF14608.1 gi|590000744|ref|YP_009001456.1| - 0.026 14.5 3.4 32 4.7 0.1 3.2 3 0 0 3 3 3 0 Zinc finger C-x8-C-x5-C-x3-H type zf-CCCH_2 PF14608.1 gi|590000745|ref|YP_009001457.1| - 0.099 12.6 10.7 98 3.1 0.1 5.2 5 0 0 5 5 5 0 Zinc finger C-x8-C-x5-C-x3-H type Xpo1 PF08389.7 gi|590000745|ref|YP_009001457.1| - 0.12 12.3 0.4 10 5.9 0.0 3.9 3 1 0 4 4 4 0 Exportin 1-like protein AAA_22 PF13401.1 gi|397781634|ref|YP_006546107.1| - 0.085 13.0 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain UPF0561 PF10573.4 gi|397781636|ref|YP_006546109.1| - 0.074 12.9 0.0 0.13 12.1 0.0 1.4 1 1 0 1 1 1 0 Uncharacterised protein family UPF0561 Rhodanese PF00581.15 gi|397781638|ref|YP_006546111.1| - 5.5e-23 81.4 0.0 3e-11 43.6 0.0 2.6 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|397781638|ref|YP_006546111.1| - 1.7e-15 57.1 1.1 5.9e-15 55.4 0.1 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily ATP-grasp_5 PF13549.1 gi|397781639|ref|YP_006546112.1| - 2e-66 223.4 0.1 2.8e-66 222.9 0.1 1.2 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|397781639|ref|YP_006546112.1| - 6.2e-53 178.1 0.2 3.5e-52 175.6 0.1 2.2 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|397781639|ref|YP_006546112.1| - 2.2e-27 95.5 0.0 8e-27 93.7 0.0 2.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|397781639|ref|YP_006546112.1| - 8.8e-12 45.3 0.0 2.5e-11 43.9 0.0 1.9 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_4 PF13535.1 gi|397781639|ref|YP_006546112.1| - 0.00042 20.0 0.0 0.0012 18.5 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain Peripla_BP_2 PF01497.13 gi|397781640|ref|YP_006546113.1| - 1.6e-24 86.3 0.0 2.5e-24 85.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|397781641|ref|YP_006546114.1| - 8.1e-88 294.2 34.4 1e-87 293.8 23.8 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|397781642|ref|YP_006546115.1| - 7.2e-29 100.8 0.0 9.1e-29 100.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397781642|ref|YP_006546115.1| - 4.6e-12 46.4 0.3 5.6e-05 23.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|397781642|ref|YP_006546115.1| - 2.4e-05 24.7 0.0 3.6e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|397781642|ref|YP_006546115.1| - 2.6e-05 23.6 0.0 0.00035 20.0 0.0 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|397781642|ref|YP_006546115.1| - 0.00035 19.8 0.0 0.0005 19.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|397781642|ref|YP_006546115.1| - 0.00042 20.4 1.7 0.01 15.9 1.2 2.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|397781642|ref|YP_006546115.1| - 0.00054 19.2 0.1 0.0028 16.9 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|397781642|ref|YP_006546115.1| - 0.0017 18.3 0.3 0.0037 17.2 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|397781642|ref|YP_006546115.1| - 0.0017 16.9 0.4 2.7 6.4 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_14 PF13173.1 gi|397781642|ref|YP_006546115.1| - 0.0025 17.7 0.0 0.021 14.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|397781642|ref|YP_006546115.1| - 0.0041 16.8 0.0 0.014 15.1 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA_15 PF13175.1 gi|397781642|ref|YP_006546115.1| - 0.01 14.9 0.0 0.23 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|397781642|ref|YP_006546115.1| - 0.015 14.9 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Rad17 PF03215.10 gi|397781642|ref|YP_006546115.1| - 0.016 13.8 0.0 0.024 13.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein SbcCD_C PF13558.1 gi|397781642|ref|YP_006546115.1| - 0.03 14.2 0.1 0.25 11.2 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|397781642|ref|YP_006546115.1| - 0.035 13.6 0.0 0.053 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|397781642|ref|YP_006546115.1| - 0.036 13.2 0.0 0.06 12.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|397781642|ref|YP_006546115.1| - 0.047 13.3 0.1 0.097 12.3 0.1 1.5 1 0 0 1 1 1 0 NACHT domain SRP54 PF00448.17 gi|397781642|ref|YP_006546115.1| - 0.048 13.0 0.0 0.085 12.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|397781642|ref|YP_006546115.1| - 0.052 13.2 0.0 0.097 12.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|397781642|ref|YP_006546115.1| - 0.053 12.4 0.0 0.16 10.8 0.0 1.8 1 1 1 2 2 2 0 Type II/IV secretion system protein AAA_25 PF13481.1 gi|397781642|ref|YP_006546115.1| - 0.061 12.7 0.3 0.19 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|397781642|ref|YP_006546115.1| - 0.072 12.5 0.2 0.15 11.4 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain AAA PF00004.24 gi|397781642|ref|YP_006546115.1| - 0.076 13.2 0.3 0.38 10.9 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|397781642|ref|YP_006546115.1| - 0.086 12.5 0.0 1.1 8.9 0.0 2.4 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|397781642|ref|YP_006546115.1| - 0.088 11.6 0.1 0.34 9.7 0.0 1.9 2 1 0 2 2 2 0 NB-ARC domain AAA_13 PF13166.1 gi|397781642|ref|YP_006546115.1| - 0.12 10.8 0.1 5.3 5.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|397781642|ref|YP_006546115.1| - 0.13 11.8 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|397781642|ref|YP_006546115.1| - 0.14 11.8 0.0 0.28 10.8 0.0 1.6 1 1 0 1 1 1 0 NTPase AAA_17 PF13207.1 gi|397781642|ref|YP_006546115.1| - 0.18 12.5 0.3 0.4 11.5 0.2 1.9 1 1 0 1 1 1 0 AAA domain DUF1622 PF07784.6 gi|397781643|ref|YP_006546116.1| - 1.9e-24 85.1 2.3 2.4e-24 84.7 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1622) 2HCT PF03390.10 gi|397781643|ref|YP_006546116.1| - 0.024 13.0 0.2 0.028 12.8 0.1 1.0 1 0 0 1 1 1 0 2-hydroxycarboxylate transporter family NUDIX PF00293.23 gi|397781644|ref|YP_006546117.1| - 7.6e-15 54.7 0.3 9.2e-15 54.4 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain UDG PF03167.14 gi|397781645|ref|YP_006546118.1| - 4e-37 127.0 0.0 5.2e-37 126.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily tRNA-synt_2 PF00152.15 gi|397781646|ref|YP_006546119.1| - 1.2e-99 333.2 2.9 1.6e-99 332.8 2.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|397781646|ref|YP_006546119.1| - 2.2e-13 49.8 0.5 4.5e-13 48.8 0.4 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|397781646|ref|YP_006546119.1| - 5.2e-06 25.8 0.9 0.0071 15.5 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) DUF2196 PF09962.4 gi|397781647|ref|YP_006546120.1| - 4.8e-33 112.7 1.9 5.5e-33 112.5 1.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) RecO_N_2 PF13114.1 gi|397781647|ref|YP_006546120.1| - 0.098 12.3 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 RecO N terminal HATPase_c PF02518.21 gi|590000746|ref|YP_006546121.2| - 7.4e-21 73.9 0.0 1.6e-20 72.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|590000746|ref|YP_006546121.2| - 5.6e-10 39.2 0.0 5.6e-10 39.2 0.0 2.2 2 0 0 2 2 2 1 HAMP domain HATPase_c_2 PF13581.1 gi|590000746|ref|YP_006546121.2| - 0.018 14.8 0.0 0.063 13.0 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain TIP49 PF06068.8 gi|590000746|ref|YP_006546121.2| - 0.036 12.7 0.1 0.06 12.0 0.1 1.2 1 0 0 1 1 1 0 TIP49 C-terminus Dak2 PF02734.12 gi|590000746|ref|YP_006546121.2| - 0.13 11.9 0.0 0.31 10.6 0.0 1.6 1 0 0 1 1 1 0 DAK2 domain Apt1 PF10351.4 gi|590000746|ref|YP_006546121.2| - 0.14 10.9 0.6 0.21 10.3 0.4 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain Fib_alpha PF08702.5 gi|590000746|ref|YP_006546121.2| - 0.38 10.8 1.0 0.69 10.0 0.7 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family HisKA PF00512.20 gi|590000746|ref|YP_006546121.2| - 1.6 8.7 5.2 0.34 10.9 0.3 2.4 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.21 gi|397781649|ref|YP_006546122.1| - 4.9e-20 71.3 0.0 2.2e-19 69.1 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|397781649|ref|YP_006546122.1| - 4.4e-09 36.3 0.8 1.4e-08 34.8 0.6 1.9 1 0 0 1 1 1 1 HAMP domain HATPase_c_2 PF13581.1 gi|397781649|ref|YP_006546122.1| - 0.001 18.8 1.2 0.0013 18.4 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Apt1 PF10351.4 gi|397781649|ref|YP_006546122.1| - 0.028 13.2 0.1 0.042 12.7 0.1 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain OrfB_IS605 PF01385.14 gi|397781650|ref|YP_006546123.1| - 4.8e-46 156.9 0.3 6.6e-46 156.5 0.2 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|397781650|ref|YP_006546123.1| - 2.1e-22 78.5 0.2 4.6e-22 77.4 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|397781650|ref|YP_006546123.1| - 1.5e-19 68.9 0.7 3.6e-19 67.7 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|397781650|ref|YP_006546123.1| - 0.0034 16.5 0.5 0.66 9.2 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|397781650|ref|YP_006546123.1| - 0.023 14.4 1.3 0.052 13.3 0.9 1.6 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|397781650|ref|YP_006546123.1| - 0.027 14.1 0.7 0.072 12.8 0.5 1.7 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|397781650|ref|YP_006546123.1| - 0.17 11.5 0.3 0.4 10.3 0.2 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|397781650|ref|YP_006546123.1| - 0.18 11.3 1.8 0.37 10.3 1.2 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|397781650|ref|YP_006546123.1| - 0.59 9.6 4.1 4.9 6.7 0.4 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|397781650|ref|YP_006546123.1| - 1.2 9.0 6.5 20 5.1 4.5 2.4 1 1 0 1 1 1 0 Rubredoxin zf-RanBP PF00641.13 gi|397781650|ref|YP_006546123.1| - 6.9 5.8 8.5 13 4.9 0.4 2.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others Cpn60_TCP1 PF00118.19 gi|397781651|ref|YP_006546124.1| - 2.9e-168 560.4 11.9 3.4e-168 560.2 8.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family HTH_3 PF01381.17 gi|397781652|ref|YP_006546125.1| - 3.8e-09 36.2 0.1 1.3e-08 34.5 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|397781652|ref|YP_006546125.1| - 3.4e-08 33.5 0.5 1.6e-07 31.3 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|397781652|ref|YP_006546125.1| - 4.5e-08 33.0 0.0 1.3e-07 31.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|397781652|ref|YP_006546125.1| - 0.00026 20.5 0.1 0.001 18.6 0.1 1.9 2 0 0 2 2 2 1 HTH domain HTH_25 PF13413.1 gi|397781652|ref|YP_006546125.1| - 0.0043 16.6 0.3 0.029 14.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|397781652|ref|YP_006546125.1| - 0.0089 15.6 0.0 0.033 13.8 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain MarR_2 PF12802.2 gi|397781652|ref|YP_006546125.1| - 0.012 15.2 0.0 0.034 13.8 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|397781652|ref|YP_006546125.1| - 0.069 12.5 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.7 gi|397781652|ref|YP_006546125.1| - 0.096 12.2 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_38 PF13936.1 gi|397781652|ref|YP_006546125.1| - 0.1 12.2 0.1 0.38 10.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain NUMOD1 PF07453.8 gi|397781652|ref|YP_006546125.1| - 0.1 12.4 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 NUMOD1 domain MerR_1 PF13411.1 gi|397781652|ref|YP_006546125.1| - 0.1 12.3 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_28 PF13518.1 gi|397781652|ref|YP_006546125.1| - 0.11 12.4 0.0 0.31 11.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AraC PF00165.18 gi|397781652|ref|YP_006546125.1| - 0.11 12.3 0.0 0.35 10.7 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family TetR_N PF00440.18 gi|397781652|ref|YP_006546125.1| - 0.12 11.9 0.0 0.76 9.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Sigma70_r4 PF04545.11 gi|397781652|ref|YP_006546125.1| - 0.18 11.1 0.8 1.1 8.6 0.1 2.4 3 0 0 3 3 3 0 Sigma-70, region 4 DUF1743 PF08489.6 gi|397781653|ref|YP_006546126.1| - 1.3e-39 134.5 0.0 2e-39 134.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|397781653|ref|YP_006546126.1| - 0.0024 17.6 0.0 0.0052 16.6 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Zn_Tnp_IS1595 PF12760.2 gi|397781653|ref|YP_006546126.1| - 0.059 13.1 0.8 0.15 11.9 0.6 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain tRNA_anti_2 PF13742.1 gi|397781653|ref|YP_006546126.1| - 0.18 11.6 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain DS PF01916.12 gi|397781654|ref|YP_006546127.1| - 1.9e-83 280.0 0.0 2.2e-83 279.8 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase OMPdecase PF00215.19 gi|397781655|ref|YP_006546128.1| - 1.4e-36 126.0 0.1 1.7e-36 125.7 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NRDD PF13597.1 gi|397781656|ref|YP_006546129.1| - 8.4e-13 47.2 4.3 8.4e-13 47.2 3.0 2.7 1 1 1 2 2 2 1 Anaerobic ribonucleoside-triphosphate reductase PolC_DP2 PF03833.8 gi|397781656|ref|YP_006546129.1| - 0.0034 15.1 4.3 0.0044 14.7 3.0 1.2 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-ribbon_3 PF13248.1 gi|397781656|ref|YP_006546129.1| - 0.01 15.0 16.8 0.55 9.5 0.4 3.9 2 2 2 4 4 4 3 zinc-ribbon domain DZR PF12773.2 gi|397781656|ref|YP_006546129.1| - 0.011 15.5 16.4 0.29 10.9 3.0 3.2 1 1 1 2 2 2 0 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|397781656|ref|YP_006546129.1| - 0.083 12.7 12.1 0.7 9.7 2.7 3.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|397781656|ref|YP_006546129.1| - 0.17 11.4 18.9 1.6 8.3 0.1 3.7 2 2 1 3 3 3 0 zinc-ribbon domain RecR PF02132.10 gi|397781656|ref|YP_006546129.1| - 0.18 11.2 9.3 0.59 9.6 1.2 3.1 2 1 1 3 3 3 0 RecR protein Zn_Tnp_IS1595 PF12760.2 gi|397781656|ref|YP_006546129.1| - 0.2 11.4 22.3 1 9.1 2.0 4.4 2 1 1 3 3 3 0 Transposase zinc-ribbon domain TerY-C PF15616.1 gi|397781656|ref|YP_006546129.1| - 0.32 10.9 14.9 1.3 8.9 10.3 2.0 1 1 0 1 1 1 0 TerY-C metal binding domain zf-C4_Topoisom PF01396.14 gi|397781656|ref|YP_006546129.1| - 0.73 9.3 10.0 2 7.9 0.1 3.7 2 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-NADH-PPase PF09297.6 gi|397781656|ref|YP_006546129.1| - 4.9 6.7 13.3 32 4.1 0.5 3.6 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain FYVE PF01363.16 gi|397781656|ref|YP_006546129.1| - 4.9 7.1 18.9 0.044 13.6 3.9 2.4 1 1 1 2 2 2 0 FYVE zinc finger CbiZ PF01955.13 gi|397781657|ref|YP_006546130.1| - 4.8e-53 179.7 0.3 6.3e-53 179.4 0.2 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase zf-like PF04071.7 gi|397781657|ref|YP_006546130.1| - 2.2e-31 107.4 3.6 3.1e-31 106.9 2.5 1.2 1 0 0 1 1 1 1 Cysteine-rich small domain GP4 PF03010.9 gi|397781657|ref|YP_006546130.1| - 0.42 10.2 2.4 1.2 8.7 1.7 1.7 1 1 0 1 1 1 0 GP4 DUF1858 PF08984.6 gi|397781658|ref|YP_006546131.1| - 1.3e-10 40.7 0.0 1.7e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1858) ScdA_N PF04405.9 gi|397781658|ref|YP_006546131.1| - 0.014 14.7 0.0 0.16 11.3 0.0 2.0 1 1 0 1 1 1 0 Domain of Unknown function (DUF542) tRNA_anti-codon PF01336.20 gi|397781659|ref|YP_006546132.1| - 1.3e-09 37.7 0.0 0.00022 20.9 0.0 2.5 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain HTH_7 PF02796.10 gi|397781662|ref|YP_006546135.1| - 5.4e-11 42.1 0.0 1.5e-10 40.7 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain of resolvase Resolvase PF00239.16 gi|397781662|ref|YP_006546135.1| - 2e-10 40.7 0.0 2.8e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_23 PF13384.1 gi|397781662|ref|YP_006546135.1| - 9.4e-07 28.2 0.1 3.2e-06 26.6 0.1 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|397781662|ref|YP_006546135.1| - 3.4e-06 26.9 0.1 3.2e-05 23.8 0.0 2.8 3 0 0 3 3 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|397781662|ref|YP_006546135.1| - 6.6e-06 25.7 0.0 1.5e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.1 gi|397781662|ref|YP_006546135.1| - 0.00015 21.8 0.8 0.0012 18.9 0.0 2.6 2 1 1 3 3 2 1 Winged helix-turn helix HTH_psq PF05225.11 gi|397781662|ref|YP_006546135.1| - 0.00017 21.0 0.2 0.00077 18.9 0.0 2.2 2 0 0 2 2 2 1 helix-turn-helix, Psq domain CENP-B_N PF04218.8 gi|397781662|ref|YP_006546135.1| - 0.00098 18.5 0.0 0.025 13.9 0.0 2.4 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain SpoIIID PF12116.3 gi|397781662|ref|YP_006546135.1| - 0.0016 18.3 0.3 0.67 9.9 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_3 PF01381.17 gi|397781662|ref|YP_006546135.1| - 0.0033 17.2 0.0 0.0078 16.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.11 gi|397781662|ref|YP_006546135.1| - 0.0056 15.9 0.0 0.014 14.7 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_32 PF13565.1 gi|397781662|ref|YP_006546135.1| - 0.0071 17.1 1.0 0.029 15.1 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|397781662|ref|YP_006546135.1| - 0.011 15.1 0.0 0.031 13.7 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|397781662|ref|YP_006546135.1| - 0.016 14.3 0.1 0.043 13.0 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_26 PF13443.1 gi|397781662|ref|YP_006546135.1| - 0.016 15.3 0.0 0.31 11.2 0.0 2.4 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain LacI PF00356.16 gi|397781662|ref|YP_006546135.1| - 0.018 14.6 0.0 0.063 12.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_5 PF01022.15 gi|397781662|ref|YP_006546135.1| - 0.019 14.6 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|397781662|ref|YP_006546135.1| - 0.019 14.7 0.1 0.05 13.4 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|397781662|ref|YP_006546135.1| - 0.023 14.2 0.0 0.07 12.7 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain PAX PF00292.13 gi|397781662|ref|YP_006546135.1| - 0.046 13.4 0.3 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 'Paired box' domain MarR PF01047.17 gi|397781662|ref|YP_006546135.1| - 0.057 13.1 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.1 gi|397781662|ref|YP_006546135.1| - 0.064 12.8 0.1 0.17 11.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2481 PF10654.4 gi|397781662|ref|YP_006546135.1| - 0.066 12.9 0.0 0.2 11.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) HTH_27 PF13463.1 gi|397781662|ref|YP_006546135.1| - 0.073 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|397781662|ref|YP_006546135.1| - 0.074 12.7 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.1 gi|397781662|ref|YP_006546135.1| - 0.077 12.4 0.1 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|397781662|ref|YP_006546135.1| - 0.091 12.9 0.2 0.63 10.2 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_17 PF12728.2 gi|397781662|ref|YP_006546135.1| - 0.093 12.9 1.7 0.21 11.8 0.0 2.5 3 1 0 3 3 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|397781662|ref|YP_006546135.1| - 0.13 11.8 0.6 0.31 10.6 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease DHBP_synthase PF00926.14 gi|397781663|ref|YP_006546136.1| - 4.6e-63 211.9 0.0 5.4e-63 211.7 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|397781665|ref|YP_006546137.1| - 1.3e-44 150.6 0.0 2.8e-44 149.6 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function DUF120 MarR PF01047.17 gi|397781665|ref|YP_006546137.1| - 4.8e-05 22.9 0.0 0.0023 17.6 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|397781665|ref|YP_006546137.1| - 0.00057 19.6 0.1 0.0043 16.7 0.0 2.4 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|397781665|ref|YP_006546137.1| - 0.00088 18.8 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|397781665|ref|YP_006546137.1| - 0.031 13.9 0.0 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.1 gi|397781665|ref|YP_006546137.1| - 0.041 13.2 0.0 0.086 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|397781665|ref|YP_006546137.1| - 0.051 13.1 0.1 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.7 gi|397781665|ref|YP_006546137.1| - 0.12 11.9 0.0 0.3 10.6 0.0 1.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_3 PF01381.17 gi|397781664|ref|YP_006546138.1| - 1.3e-07 31.3 0.0 2.5e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|397781664|ref|YP_006546138.1| - 0.00026 21.1 0.0 0.0005 20.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|397781664|ref|YP_006546138.1| - 0.00075 19.4 0.0 0.0014 18.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain ACP_syn_III_C PF08541.5 gi|397781666|ref|YP_006546139.1| - 8.9e-11 41.6 0.0 1.8e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.12 gi|397781666|ref|YP_006546139.1| - 3.5e-06 26.6 0.0 5.2e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|397781666|ref|YP_006546139.1| - 0.00058 19.4 0.0 0.023 14.1 0.0 2.1 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|397781666|ref|YP_006546139.1| - 0.0025 17.4 1.5 0.0025 17.4 1.0 2.5 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_C PF02803.13 gi|397781667|ref|YP_006546140.1| - 2.4e-12 46.3 1.6 2.4e-12 46.3 1.1 2.5 3 1 0 3 3 3 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|397781667|ref|YP_006546140.1| - 1.8e-11 43.5 4.3 1.1e-10 40.9 0.1 2.5 3 0 0 3 3 3 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|397781667|ref|YP_006546140.1| - 0.00034 20.1 7.3 0.00034 20.1 5.0 3.9 4 1 0 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|397781667|ref|YP_006546140.1| - 0.013 15.3 0.4 0.74 9.6 0.1 2.7 2 0 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|397781668|ref|YP_006546141.1| - 2.1e-19 69.4 0.1 3.1e-19 68.9 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|397781668|ref|YP_006546141.1| - 1e-11 44.3 1.3 1e-11 44.3 0.9 1.8 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_5 PF13719.1 gi|397781668|ref|YP_006546141.1| - 0.02 14.4 0.8 4.6 6.9 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|397781668|ref|YP_006546141.1| - 0.023 14.5 0.4 0.036 13.8 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|397781668|ref|YP_006546141.1| - 0.032 13.9 0.3 8.8 6.1 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain HMG-CoA_red PF00368.13 gi|397781669|ref|YP_006546142.1| - 9e-142 472.1 5.8 1e-141 471.9 4.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Met_10 PF02475.11 gi|397781670|ref|YP_006546143.1| - 4.1e-48 163.6 0.0 5.5e-48 163.2 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|397781670|ref|YP_006546143.1| - 2.4e-08 34.0 2.6 5.6e-08 32.8 1.8 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|397781670|ref|YP_006546143.1| - 7.3e-07 28.7 0.0 1e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|397781670|ref|YP_006546143.1| - 7.7e-07 29.6 0.1 1.4e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|397781670|ref|YP_006546143.1| - 9e-05 21.7 0.0 0.00013 21.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|397781670|ref|YP_006546143.1| - 0.00016 21.1 0.0 0.00028 20.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|397781670|ref|YP_006546143.1| - 0.00038 20.0 0.0 0.00052 19.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.6 gi|397781670|ref|YP_006546143.1| - 0.0016 17.2 0.0 0.0022 16.7 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_31 PF13847.1 gi|397781670|ref|YP_006546143.1| - 0.003 17.1 0.0 0.0041 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|397781670|ref|YP_006546143.1| - 0.0061 15.5 0.0 0.0079 15.1 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PCMT PF01135.14 gi|397781670|ref|YP_006546143.1| - 0.076 12.5 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|397781670|ref|YP_006546143.1| - 0.19 10.7 0.0 0.31 10.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DNA_methylase PF00145.12 gi|397781670|ref|YP_006546143.1| - 0.21 10.6 0.0 0.44 9.6 0.0 1.5 2 0 0 2 2 2 0 C-5 cytosine-specific DNA methylase Acetyltransf_1 PF00583.19 gi|397781672|ref|YP_006546144.1| - 6.6e-20 70.9 0.5 1e-19 70.3 0.4 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|397781672|ref|YP_006546144.1| - 2.4e-14 53.4 0.0 3.4e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|397781672|ref|YP_006546144.1| - 4.6e-14 52.3 0.1 7.2e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|397781672|ref|YP_006546144.1| - 1.3e-09 37.9 0.2 4.3e-09 36.2 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|397781672|ref|YP_006546144.1| - 1.5e-09 37.4 0.1 2.5e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|397781672|ref|YP_006546144.1| - 2.3e-05 24.3 0.1 3.8e-05 23.5 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|397781672|ref|YP_006546144.1| - 0.00089 18.8 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|397781672|ref|YP_006546144.1| - 0.00096 18.5 0.0 0.0013 18.1 0.0 1.3 1 0 0 1 1 1 1 GNAT acetyltransferase 2 Acetyltransf_4 PF13420.1 gi|397781672|ref|YP_006546144.1| - 0.0017 18.2 0.0 0.0031 17.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|397781672|ref|YP_006546144.1| - 0.0069 16.5 0.0 0.021 14.9 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|397781672|ref|YP_006546144.1| - 0.0096 15.6 0.0 0.036 13.7 0.0 1.9 2 0 0 2 2 2 1 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.1 gi|397781672|ref|YP_006546144.1| - 0.098 12.5 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF1015 PF06245.6 gi|397781671|ref|YP_006546145.1| - 5.1e-124 413.9 0.0 5.7e-124 413.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) HisG PF01634.13 gi|397781673|ref|YP_006546146.1| - 2.1e-37 128.1 0.0 2.9e-37 127.7 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|397781673|ref|YP_006546146.1| - 2.5e-21 75.4 0.1 8.1e-21 73.7 0.0 1.9 2 0 0 2 2 2 1 HisG, C-terminal domain Vps35 PF03635.12 gi|397781673|ref|YP_006546146.1| - 0.17 10.0 0.0 0.17 10.0 0.0 1.0 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 FmdE PF02663.9 gi|397781674|ref|YP_006546147.1| - 8.3e-42 142.1 0.0 1e-41 141.8 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|397781674|ref|YP_006546147.1| - 9.2e-08 31.6 2.9 1.9e-07 30.7 2.0 1.6 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger OrfB_Zn_ribbon PF07282.6 gi|397781674|ref|YP_006546147.1| - 0.024 14.2 0.4 0.042 13.4 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RRN7 PF11781.3 gi|397781674|ref|YP_006546147.1| - 0.035 13.6 2.3 0.035 13.6 1.6 1.9 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF4428 PF14471.1 gi|397781674|ref|YP_006546147.1| - 0.065 12.9 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) Zn-ribbon_8 PF09723.5 gi|397781674|ref|YP_006546147.1| - 0.28 11.1 1.9 0.85 9.6 1.3 1.9 1 0 0 1 1 1 0 Zinc ribbon domain Big_4 PF07532.6 gi|397781680|ref|YP_006546153.1| - 0.0054 16.2 0.3 0.01 15.2 0.2 1.5 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 4) DUF1628 PF07790.6 gi|397781680|ref|YP_006546153.1| - 0.14 12.8 0.9 3.2 8.5 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1628) eIF-1a PF01176.14 gi|397781681|ref|YP_006546154.1| - 2.6e-22 78.0 0.7 3.1e-22 77.7 0.5 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF2238 PF09997.4 gi|397781682|ref|YP_006546155.1| - 0.035 13.4 8.2 0.049 13.0 4.0 2.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2238) Metallophos PF00149.23 gi|397781683|ref|YP_006546156.1| - 4.3e-07 29.5 0.6 9.3e-06 25.1 0.0 2.1 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|397781683|ref|YP_006546156.1| - 1.1e-05 25.2 0.4 3.9e-05 23.5 0.2 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF4520 PF15016.1 gi|397781683|ref|YP_006546156.1| - 0.037 13.6 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4520) Mrr_cat PF04471.7 gi|590000747|ref|YP_006546157.2| - 3.6e-09 36.4 0.0 6.6e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease ATP-cone PF03477.11 gi|590000747|ref|YP_006546157.2| - 2.2e-06 28.0 0.0 1.1e-05 25.7 0.0 2.1 2 0 0 2 2 2 1 ATP cone domain TerB PF05099.8 gi|590000747|ref|YP_006546157.2| - 0.00088 19.0 0.7 0.0051 16.5 0.1 2.4 2 1 0 2 2 2 1 Tellurite resistance protein TerB UPF0102 PF02021.12 gi|590000747|ref|YP_006546157.2| - 0.02 14.7 0.1 0.046 13.6 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 HHH_5 PF14520.1 gi|590000747|ref|YP_006546157.2| - 0.024 14.8 4.4 0.35 11.0 0.1 3.0 3 1 0 3 3 3 0 Helix-hairpin-helix domain Hjc PF01870.13 gi|590000747|ref|YP_006546157.2| - 0.03 13.9 0.2 0.12 12.0 0.0 2.1 2 0 0 2 2 2 0 Archaeal holliday junction resolvase (hjc) ApbA_C PF08546.6 gi|397781685|ref|YP_006546158.1| - 9.7e-32 109.5 0.0 1.3e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|397781685|ref|YP_006546158.1| - 4.9e-22 77.9 0.1 6.9e-22 77.5 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DUF2188 PF09954.4 gi|397781686|ref|YP_006546159.1| - 0.17 11.8 1.0 0.38 10.6 0.7 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) Flavodoxin_4 PF12682.2 gi|397781687|ref|YP_006546160.1| - 4.3e-08 32.6 0.0 1.2e-07 31.2 0.0 1.6 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|397781687|ref|YP_006546160.1| - 1.9e-06 27.9 0.0 0.00043 20.2 0.0 2.5 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|397781687|ref|YP_006546160.1| - 4.7e-05 23.4 0.0 0.00056 19.9 0.0 2.2 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|397781687|ref|YP_006546160.1| - 0.0005 19.6 0.1 0.00066 19.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Tub PF01167.13 gi|397781687|ref|YP_006546160.1| - 0.015 14.2 0.0 0.018 14.0 0.0 1.1 1 0 0 1 1 1 0 Tub family Flavodoxin_3 PF12641.2 gi|397781687|ref|YP_006546160.1| - 0.057 12.8 0.0 0.18 11.1 0.0 1.7 1 1 1 2 2 2 0 Flavodoxin domain BofA PF07441.6 gi|397781688|ref|YP_006546161.1| - 2.6e-17 62.5 23.1 3.1e-17 62.3 16.0 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Presenilin PF01080.12 gi|397781688|ref|YP_006546161.1| - 5.1 5.8 12.3 5.1 5.8 8.5 1.0 1 0 0 1 1 1 0 Presenilin DUF3341 PF11821.3 gi|397781688|ref|YP_006546161.1| - 5.5 6.4 7.1 1.8 8.0 1.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3341) DUF1301 PF06979.7 gi|397781688|ref|YP_006546161.1| - 7.7 6.6 7.1 3.3 7.8 3.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1301) FtsX PF02687.16 gi|397781688|ref|YP_006546161.1| - 8.7 6.1 17.3 59 3.4 12.0 1.9 1 1 0 1 1 1 0 FtsX-like permease family Transglut_core PF01841.14 gi|397781689|ref|YP_006546162.1| - 2.7e-07 30.7 0.1 4.5e-07 30.0 0.0 1.4 1 1 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.1 gi|397781689|ref|YP_006546162.1| - 0.00067 19.4 0.5 0.0012 18.5 0.3 1.5 1 1 0 1 1 1 1 Transglutaminase-like superfamily Peptidase_C93 PF06035.6 gi|397781689|ref|YP_006546162.1| - 0.033 13.6 0.0 0.057 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial transglutaminase-like cysteine proteinase BTLCP Transglut_core2 PF13369.1 gi|397781689|ref|YP_006546162.1| - 0.083 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase-like superfamily HI0933_like PF03486.9 gi|590000748|ref|YP_006546163.2| - 1.7e-120 402.2 0.0 1.9e-120 402.0 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.19 gi|590000748|ref|YP_006546163.2| - 1.2e-13 50.7 1.7 2.1e-06 26.9 0.2 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|590000748|ref|YP_006546163.2| - 3.8e-11 42.4 7.7 1.7e-06 27.1 0.3 2.9 2 1 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|590000748|ref|YP_006546163.2| - 7.9e-11 42.3 0.0 3.5e-10 40.2 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|590000748|ref|YP_006546163.2| - 3e-07 30.3 1.2 1.3e-06 28.3 0.2 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|590000748|ref|YP_006546163.2| - 3.6e-07 30.2 6.3 3.9e-06 26.9 4.4 2.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|590000748|ref|YP_006546163.2| - 8.2e-07 28.4 0.6 1.2e-06 27.8 0.4 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|590000748|ref|YP_006546163.2| - 2.1e-06 26.8 3.0 0.0016 17.4 0.1 2.6 3 0 0 3 3 3 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|590000748|ref|YP_006546163.2| - 0.00049 19.2 0.0 0.00082 18.5 0.0 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.1 gi|590000748|ref|YP_006546163.2| - 0.00053 19.7 0.3 0.0031 17.2 0.2 2.1 1 1 0 1 1 1 1 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|590000748|ref|YP_006546163.2| - 0.0015 18.9 0.0 0.11 12.9 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|590000748|ref|YP_006546163.2| - 0.015 14.3 0.3 0.061 12.3 0.2 1.8 2 0 0 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.7 gi|590000748|ref|YP_006546163.2| - 0.026 13.4 0.4 0.063 12.1 0.0 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein LEA_2 PF03168.8 gi|590000749|ref|YP_009001458.1| - 3.9e-14 52.8 0.1 5.5e-14 52.3 0.1 1.2 1 0 0 1 1 1 1 Late embryogenesis abundant protein UbiA PF01040.13 gi|590000750|ref|YP_006546168.2| - 1.7e-29 102.8 34.8 1.7e-29 102.8 24.1 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family Lsr2 PF11774.3 gi|397781691|ref|YP_006546164.1| - 0.081 12.8 0.8 0.12 12.2 0.6 1.2 1 0 0 1 1 1 0 Lsr2 DUF1294 PF06961.8 gi|397781692|ref|YP_006546165.1| - 6.8e-21 73.9 1.2 1.1e-20 73.3 0.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) DUF4118 PF13493.1 gi|397781692|ref|YP_006546165.1| - 2.5 8.3 7.8 0.78 9.9 1.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4118) 7TMR-DISM_7TM PF07695.6 gi|397781692|ref|YP_006546165.1| - 6.3 6.4 11.0 93 2.5 7.7 1.9 1 1 0 1 1 1 0 7TM diverse intracellular signalling SnoaL PF07366.7 gi|397781693|ref|YP_006546166.1| - 0.22 11.0 1.9 3 7.4 0.2 2.2 1 1 1 2 2 2 0 SnoaL-like polyketide cyclase Rubredoxin PF00301.15 gi|590000751|ref|YP_006546167.2| - 4.8e-19 67.9 3.0 5.4e-19 67.7 2.1 1.1 1 0 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|590000751|ref|YP_006546167.2| - 0.056 13.0 1.9 3.4 7.2 0.0 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-MIZ PF02891.15 gi|590000751|ref|YP_006546167.2| - 0.21 11.1 0.2 0.21 11.1 0.1 2.0 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger DUF282 PF03380.9 gi|590000751|ref|YP_006546167.2| - 0.25 11.1 0.2 0.25 11.1 0.2 1.7 2 0 0 2 2 2 0 Caenorhabditis protein of unknown function, DUF282 TF_Zn_Ribbon PF08271.7 gi|590000751|ref|YP_006546167.2| - 0.34 10.2 2.6 4.3 6.7 0.3 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C2H2_4 PF13894.1 gi|590000751|ref|YP_006546167.2| - 0.41 11.0 2.6 14 6.2 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-LSD1 PF06943.7 gi|590000751|ref|YP_006546167.2| - 0.46 10.1 8.4 0.18 11.4 1.3 2.2 2 0 0 2 2 2 0 LSD1 zinc finger UPF0547 PF10571.4 gi|590000751|ref|YP_006546167.2| - 2.7 7.7 6.2 2 8.1 0.6 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 UbiA PF01040.13 gi|590000752|ref|YP_009001459.1| - 9.1e-27 93.8 31.3 1.8e-26 92.9 21.7 1.5 1 1 0 1 1 1 1 UbiA prenyltransferase family RseC_MucC PF04246.7 gi|590000752|ref|YP_009001459.1| - 0.16 11.5 0.0 0.16 11.5 0.0 3.3 4 1 0 4 4 4 0 Positive regulator of sigma(E), RseC/MucC TcpE PF12648.2 gi|590000752|ref|YP_009001459.1| - 1.1 9.4 0.0 1.1 9.4 0.0 2.9 3 1 0 3 3 3 0 TcpE family Acyl_transf_3 PF01757.17 gi|397781696|ref|YP_006546169.1| - 2.7e-15 56.0 27.3 2.7e-15 56.0 18.9 2.0 1 1 1 2 2 2 2 Acyltransferase family Cupredoxin_1 PF13473.1 gi|397781697|ref|YP_006546170.1| - 7.2e-11 41.9 0.0 1e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|397781697|ref|YP_006546170.1| - 1.4e-07 31.6 0.1 2.4e-07 30.9 0.1 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_2 PF07731.9 gi|397781697|ref|YP_006546170.1| - 0.0042 16.6 0.1 0.23 10.9 0.0 2.2 2 0 0 2 2 2 1 Multicopper oxidase DUF1034 PF06280.7 gi|397781697|ref|YP_006546170.1| - 0.041 14.2 0.2 0.078 13.3 0.1 1.5 2 0 0 2 2 2 0 Fn3-like domain (DUF1034) TOBE PF03459.12 gi|397781697|ref|YP_006546170.1| - 0.1 12.6 0.3 0.34 11.0 0.1 1.8 2 0 0 2 2 2 0 TOBE domain SoxE PF06525.6 gi|397781697|ref|YP_006546170.1| - 0.12 11.6 0.0 0.2 10.9 0.0 1.5 2 0 0 2 2 2 0 Sulfocyanin (SoxE) Cu-oxidase_3 PF07732.10 gi|397781697|ref|YP_006546170.1| - 0.14 11.8 0.1 0.97 9.1 0.1 2.2 1 1 0 1 1 1 0 Multicopper oxidase DUF2298 PF10060.4 gi|397781698|ref|YP_006546171.1| - 4e-92 309.5 37.9 4e-92 309.5 26.2 1.9 2 0 0 2 2 2 1 Uncharacterized membrane protein (DUF2298) NIR_SIR PF01077.17 gi|397781699|ref|YP_006546172.1| - 2.1e-28 98.6 0.0 3.2e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|397781699|ref|YP_006546172.1| - 7.3e-18 63.9 0.1 1.7e-17 62.8 0.1 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.2 gi|397781699|ref|YP_006546172.1| - 2.5e-09 37.3 12.2 2.5e-09 37.3 8.5 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|397781699|ref|YP_006546172.1| - 3.9e-09 35.7 23.6 1.3e-05 24.5 3.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|397781699|ref|YP_006546172.1| - 3.8e-08 32.9 36.4 1.6e-06 27.7 8.6 2.4 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397781699|ref|YP_006546172.1| - 4e-08 32.7 18.9 2.5e-05 23.9 2.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|397781699|ref|YP_006546172.1| - 7.1e-07 29.4 13.9 7.1e-07 29.4 9.6 2.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|397781699|ref|YP_006546172.1| - 6.6e-06 25.8 11.3 6.6e-06 25.8 7.8 2.6 1 1 2 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|397781699|ref|YP_006546172.1| - 0.0011 18.9 20.2 0.012 15.5 8.7 2.6 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397781699|ref|YP_006546172.1| - 0.0018 18.9 10.1 0.017 15.8 0.7 2.9 3 1 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|397781699|ref|YP_006546172.1| - 0.0031 17.3 13.0 0.0084 15.9 2.2 3.2 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|397781699|ref|YP_006546172.1| - 0.011 16.1 4.9 0.011 16.1 3.4 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|397781699|ref|YP_006546172.1| - 0.018 15.3 3.3 0.018 15.3 2.3 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|397781699|ref|YP_006546172.1| - 0.042 14.4 7.1 0.042 14.4 4.9 4.1 4 0 0 4 4 4 0 4Fe-4S binding domain VCX_VCY PF15231.1 gi|397781699|ref|YP_006546172.1| - 0.18 12.1 0.2 0.27 11.6 0.2 1.2 1 0 0 1 1 1 0 Variable charge X/Y family Fer4_17 PF13534.1 gi|397781699|ref|YP_006546172.1| - 0.2 12.0 18.1 0.12 12.6 0.7 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|397781699|ref|YP_006546172.1| - 9.9 6.8 20.8 2.1 8.9 2.3 3.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain DUF3108 PF11306.3 gi|397781700|ref|YP_006546173.1| - 0.021 14.4 0.3 0.048 13.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3108) Big_3_4 PF13754.1 gi|397781700|ref|YP_006546173.1| - 0.33 11.3 6.8 18 5.7 0.0 4.3 4 1 1 5 5 5 0 Bacterial Ig-like domain (group 3) DUF86 PF01934.12 gi|397781703|ref|YP_006546176.1| - 5.3e-26 90.6 0.0 6.3e-26 90.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF759 PF05537.6 gi|397781703|ref|YP_006546176.1| - 0.032 12.9 0.0 0.042 12.6 0.0 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) TP6A_N PF04406.9 gi|397781703|ref|YP_006546176.1| - 0.1 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Type IIB DNA topoisomerase ThiC PF01964.13 gi|397781704|ref|YP_006546177.1| - 5.5e-142 473.2 0.5 6.3e-142 473.0 0.4 1.0 1 0 0 1 1 1 1 ThiC family AP_endonuc_2 PF01261.19 gi|397781704|ref|YP_006546177.1| - 0.026 13.8 0.0 0.054 12.7 0.0 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF1498 PF07385.7 gi|397781704|ref|YP_006546177.1| - 0.065 12.3 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1498) zinc_ribbon_6 PF14599.1 gi|397781705|ref|YP_006546178.1| - 0.0024 17.6 3.8 0.061 13.1 3.0 2.1 1 1 1 2 2 2 1 Zinc-ribbon Molybdop_Fe4S4 PF04879.11 gi|397781705|ref|YP_006546178.1| - 0.013 15.2 2.1 0.017 14.9 1.5 1.2 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain C1_1 PF00130.17 gi|397781705|ref|YP_006546178.1| - 0.031 13.9 1.6 0.044 13.5 1.1 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.6 gi|397781705|ref|YP_006546178.1| - 0.033 13.8 1.8 0.037 13.6 1.3 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF326 PF03860.11 gi|397781705|ref|YP_006546178.1| - 0.25 11.2 0.8 0.25 11.2 0.6 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) Zn-ribbon_8 PF09723.5 gi|397781705|ref|YP_006546178.1| - 0.56 10.1 5.2 0.78 9.7 3.6 1.2 1 0 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|397781705|ref|YP_006546178.1| - 0.95 8.9 5.0 2.8 7.4 3.5 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit CbiA PF01656.18 gi|397781706|ref|YP_006546179.1| - 3.7e-27 95.0 0.0 4.5e-27 94.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|397781706|ref|YP_006546179.1| - 1.9e-11 43.0 14.3 1.1e-05 24.8 2.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|397781706|ref|YP_006546179.1| - 2.9e-09 37.1 10.6 0.00019 21.7 0.2 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|397781706|ref|YP_006546179.1| - 2.8e-08 34.3 6.2 0.00093 19.8 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|397781706|ref|YP_006546179.1| - 6.9e-07 29.0 6.4 1.5e-06 27.9 4.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain ParA PF10609.4 gi|397781706|ref|YP_006546179.1| - 1.6e-06 27.8 0.1 3.6e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 ParA/MinD ATPase like Fer4_10 PF13237.1 gi|397781706|ref|YP_006546179.1| - 2e-05 24.2 10.8 5e-05 23.0 7.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|397781706|ref|YP_006546179.1| - 4.4e-05 23.6 10.1 0.024 14.8 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|397781706|ref|YP_006546179.1| - 7.2e-05 22.4 19.0 0.0034 17.1 2.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|397781706|ref|YP_006546179.1| - 0.00025 20.7 14.4 0.009 15.8 1.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_26 PF13500.1 gi|397781706|ref|YP_006546179.1| - 0.00028 20.5 0.6 0.0091 15.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain Fer4_4 PF12800.2 gi|397781706|ref|YP_006546179.1| - 0.0018 18.4 13.6 0.029 14.6 1.8 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|397781706|ref|YP_006546179.1| - 0.0022 18.5 8.6 0.047 14.2 0.3 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain AAA_19 PF13245.1 gi|397781706|ref|YP_006546179.1| - 0.0069 16.1 3.0 0.1 12.3 0.1 3.2 3 0 0 3 3 3 1 Part of AAA domain Fer4_8 PF13183.1 gi|397781706|ref|YP_006546179.1| - 0.011 15.7 11.6 0.11 12.4 7.8 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain ArsA_ATPase PF02374.10 gi|397781706|ref|YP_006546179.1| - 0.011 14.7 1.9 0.069 12.1 0.8 2.0 2 0 0 2 2 2 0 Anion-transporting ATPase Fer4_11 PF13247.1 gi|397781706|ref|YP_006546179.1| - 0.019 14.8 5.2 0.036 13.9 3.6 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|397781706|ref|YP_006546179.1| - 0.028 14.8 9.8 0.47 10.9 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain AAA PF00004.24 gi|397781706|ref|YP_006546179.1| - 0.04 14.1 0.6 0.085 13.0 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|397781706|ref|YP_006546179.1| - 0.074 13.8 0.0 0.17 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|397781706|ref|YP_006546179.1| - 0.076 12.5 0.9 1.5 8.3 0.3 2.3 2 0 0 2 2 2 0 AAA domain Fer4_17 PF13534.1 gi|397781706|ref|YP_006546179.1| - 0.078 13.3 12.4 0.34 11.2 1.5 2.4 1 1 3 4 4 4 0 4Fe-4S dicluster domain DUF4318 PF14201.1 gi|397781706|ref|YP_006546179.1| - 0.08 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4318) PhoH PF02562.11 gi|397781706|ref|YP_006546179.1| - 0.096 11.9 0.8 1.7 7.8 0.4 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_22 PF13401.1 gi|397781706|ref|YP_006546179.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|397781706|ref|YP_006546179.1| - 0.11 11.6 0.2 2.2 7.3 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI GTP_EFTU PF00009.22 gi|397781706|ref|YP_006546179.1| - 0.18 11.2 0.0 0.51 9.7 0.0 1.7 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain NAD_binding_10 PF13460.1 gi|397781706|ref|YP_006546179.1| - 1.8 8.4 3.9 10 6.1 0.1 2.3 2 0 0 2 2 2 0 NADH(P)-binding Fer4_3 PF12798.2 gi|397781706|ref|YP_006546179.1| - 2.1 9.1 22.9 0.11 13.1 5.5 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain CbiA PF01656.18 gi|590000753|ref|YP_006546180.2| - 5e-28 97.8 0.0 7.3e-28 97.3 0.0 1.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|590000753|ref|YP_006546180.2| - 1.6e-08 33.8 14.3 2.1e-05 23.8 0.9 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_NifH PF00142.13 gi|590000753|ref|YP_006546180.2| - 5.3e-08 32.3 0.0 0.00037 19.7 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|590000753|ref|YP_006546180.2| - 2.5e-07 30.7 0.0 4.2e-06 26.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain Fer4_7 PF12838.2 gi|590000753|ref|YP_006546180.2| - 4.3e-06 27.0 9.7 0.0035 17.6 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|590000753|ref|YP_006546180.2| - 1.5e-05 24.6 11.5 0.0039 16.9 0.3 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|590000753|ref|YP_006546180.2| - 1.6e-05 24.6 9.0 0.00015 21.5 6.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|590000753|ref|YP_006546180.2| - 8.3e-05 22.7 10.4 0.0024 18.0 7.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|590000753|ref|YP_006546180.2| - 0.0001 22.5 5.8 0.058 13.7 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain MipZ PF09140.6 gi|590000753|ref|YP_006546180.2| - 0.00015 20.9 0.0 0.0002 20.5 0.0 1.1 1 0 0 1 1 1 1 ATPase MipZ Fer4_21 PF14697.1 gi|590000753|ref|YP_006546180.2| - 0.00043 20.0 4.8 0.00043 20.0 3.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain ArsA_ATPase PF02374.10 gi|590000753|ref|YP_006546180.2| - 0.00059 18.9 0.2 0.00083 18.4 0.1 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_8 PF13183.1 gi|590000753|ref|YP_006546180.2| - 0.0012 18.8 12.4 0.011 15.7 7.7 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|590000753|ref|YP_006546180.2| - 0.002 18.8 6.7 0.039 14.6 0.8 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain AAA_25 PF13481.1 gi|590000753|ref|YP_006546180.2| - 0.0026 17.1 0.0 0.0072 15.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.1 gi|590000753|ref|YP_006546180.2| - 0.007 15.9 0.1 0.078 12.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|590000753|ref|YP_006546180.2| - 0.021 14.5 0.4 0.18 11.6 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_17 PF13207.1 gi|590000753|ref|YP_006546180.2| - 0.022 15.5 0.0 0.039 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Fer4_2 PF12797.2 gi|590000753|ref|YP_006546180.2| - 0.042 13.7 16.8 0.097 12.6 1.7 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|590000753|ref|YP_006546180.2| - 0.063 13.8 19.9 0.085 13.4 4.5 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain YhjQ PF06564.7 gi|590000753|ref|YP_006546180.2| - 0.065 12.5 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 YhjQ protein VirC1 PF07015.6 gi|590000753|ref|YP_006546180.2| - 0.076 12.0 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein MobB PF03205.9 gi|590000753|ref|YP_006546180.2| - 0.083 12.6 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Fer4_18 PF13746.1 gi|590000753|ref|YP_006546180.2| - 0.12 12.8 9.1 1.2 9.6 1.0 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|590000753|ref|YP_006546180.2| - 0.14 12.7 5.9 6.7 7.3 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|590000753|ref|YP_006546180.2| - 0.17 12.3 16.4 0.36 11.2 1.8 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Nitro_FeMo-Co PF02579.12 gi|590000754|ref|YP_009001460.1| - 1.6e-22 79.3 0.1 1.8e-22 79.1 0.1 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor 2-Hacid_dh_C PF02826.14 gi|590000754|ref|YP_009001460.1| - 0.07 12.2 0.1 0.096 11.8 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Nitro_FeMo-Co PF02579.12 gi|590000755|ref|YP_006546181.2| - 1.9e-20 72.7 0.0 2.4e-20 72.3 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Imm2 PF14426.1 gi|590000755|ref|YP_006546181.2| - 0.0098 15.8 0.0 0.016 15.1 0.0 1.4 1 1 0 1 1 1 1 Immunity protein Imm2 AAA_32 PF13654.1 gi|397781709|ref|YP_006546182.1| - 8e-191 635.1 0.9 9.5e-191 634.8 0.6 1.0 1 0 0 1 1 1 1 AAA domain Lon_C PF05362.8 gi|397781709|ref|YP_006546182.1| - 5.1e-09 35.7 0.3 2.2e-08 33.6 0.0 2.0 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain AAA_16 PF13191.1 gi|397781709|ref|YP_006546182.1| - 0.0032 17.4 0.4 0.0032 17.4 0.3 2.4 2 1 0 2 2 2 1 AAA ATPase domain VPR PF00522.13 gi|397781709|ref|YP_006546182.1| - 0.022 14.5 0.1 0.064 13.0 0.1 1.8 1 0 0 1 1 1 0 VPR/VPX protein Lsr2 PF11774.3 gi|397781709|ref|YP_006546182.1| - 0.027 14.3 0.1 0.094 12.6 0.1 1.9 1 0 0 1 1 1 0 Lsr2 Aminotran_5 PF00266.14 gi|397781710|ref|YP_006546183.1| - 2.7e-91 306.0 0.0 3.1e-91 305.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|397781710|ref|YP_006546183.1| - 1.5e-08 34.0 0.9 2e-08 33.6 0.6 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|397781710|ref|YP_006546183.1| - 3.6e-08 32.9 0.1 4.6e-08 32.5 0.1 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|397781710|ref|YP_006546183.1| - 0.0012 17.1 0.0 0.0017 16.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme PGM_PMM_I PF02878.11 gi|397781711|ref|YP_006546184.1| - 2.2e-28 98.4 0.0 4.5e-28 97.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|397781711|ref|YP_006546184.1| - 4.9e-23 81.3 0.0 9e-23 80.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|397781711|ref|YP_006546184.1| - 6.9e-22 77.7 0.0 1.2e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|397781711|ref|YP_006546184.1| - 2e-08 34.1 0.0 5.1e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_23 PF13489.1 gi|397781712|ref|YP_006546185.1| - 7.1e-12 45.3 0.0 1e-11 44.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397781712|ref|YP_006546185.1| - 2.1e-10 41.1 0.0 3.9e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|397781712|ref|YP_006546185.1| - 4.9e-10 38.8 0.0 7.6e-10 38.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.1 gi|397781712|ref|YP_006546185.1| - 1.4e-09 37.6 0.0 2.2e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|397781712|ref|YP_006546185.1| - 3.6e-08 33.7 0.0 7.4e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|397781712|ref|YP_006546185.1| - 1e-07 32.3 0.0 2e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|397781712|ref|YP_006546185.1| - 3.4e-07 29.8 0.0 6.9e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|397781712|ref|YP_006546185.1| - 7.8e-07 29.1 0.0 1.1e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|397781712|ref|YP_006546185.1| - 1.3e-06 27.9 0.0 2e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_25 PF13649.1 gi|397781712|ref|YP_006546185.1| - 8.5e-06 26.0 0.0 1.5e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|397781712|ref|YP_006546185.1| - 0.00026 19.7 0.0 0.00059 18.6 0.0 1.5 2 0 0 2 2 2 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.12 gi|397781712|ref|YP_006546185.1| - 0.0013 17.8 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase GidB PF02527.10 gi|397781712|ref|YP_006546185.1| - 0.0098 15.0 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_15 PF09445.5 gi|397781712|ref|YP_006546185.1| - 0.014 14.9 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.13 gi|397781712|ref|YP_006546185.1| - 0.016 14.3 0.0 0.021 13.9 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|397781712|ref|YP_006546185.1| - 0.02 14.4 0.0 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|397781712|ref|YP_006546185.1| - 0.036 13.2 0.0 0.056 12.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB DUF134 PF02001.11 gi|397781713|ref|YP_006546186.1| - 5.1e-26 90.6 0.1 6.3e-26 90.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|397781713|ref|YP_006546186.1| - 3.2e-06 26.5 0.1 4.7e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.6 gi|397781713|ref|YP_006546186.1| - 1e-05 25.2 0.1 1.4e-05 24.8 0.1 1.2 1 0 0 1 1 1 1 ECF sigma factor HTH_23 PF13384.1 gi|397781713|ref|YP_006546186.1| - 9e-05 21.9 1.1 0.00011 21.7 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_8 PF02954.14 gi|397781713|ref|YP_006546186.1| - 0.00013 21.4 0.1 0.00013 21.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_17 PF12728.2 gi|397781713|ref|YP_006546186.1| - 0.00089 19.4 1.4 0.0037 17.4 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|397781713|ref|YP_006546186.1| - 0.0028 16.9 0.1 0.0028 16.9 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|397781713|ref|YP_006546186.1| - 0.0083 15.9 1.1 0.0095 15.7 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|397781713|ref|YP_006546186.1| - 0.0094 16.1 5.3 0.014 15.5 3.5 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain NUMOD1 PF07453.8 gi|397781713|ref|YP_006546186.1| - 0.015 15.1 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 NUMOD1 domain HTH_11 PF08279.7 gi|397781713|ref|YP_006546186.1| - 0.015 14.9 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_1 PF00126.22 gi|397781713|ref|YP_006546186.1| - 0.025 14.3 0.1 0.04 13.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.1 gi|397781713|ref|YP_006546186.1| - 0.025 14.5 0.1 0.025 14.5 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|397781713|ref|YP_006546186.1| - 0.098 12.8 0.2 0.098 12.8 0.2 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_10 PF04967.7 gi|397781713|ref|YP_006546186.1| - 0.11 12.0 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain NHL PF01436.16 gi|397781715|ref|YP_006546188.1| - 9.4e-22 75.8 23.9 3.7e-06 26.6 0.9 7.6 7 0 0 7 7 7 6 NHL repeat SBBP PF06739.6 gi|397781715|ref|YP_006546188.1| - 1.1e-10 41.1 17.1 0.014 15.1 0.0 7.2 6 0 0 6 6 6 3 Beta-propeller repeat SGL PF08450.7 gi|397781715|ref|YP_006546188.1| - 1.5e-10 40.8 8.3 0.15 11.4 0.0 6.4 3 2 3 6 6 6 5 SMP-30/Gluconolaconase/LRE-like region Poly_export PF02563.11 gi|397781715|ref|YP_006546188.1| - 0.039 13.7 1.1 0.79 9.5 0.0 3.7 4 1 1 5 5 5 0 Polysaccharide biosynthesis/export protein YfkB PF08756.5 gi|397781715|ref|YP_006546188.1| - 0.28 10.7 0.4 20 4.7 0.0 2.5 2 0 0 2 2 2 0 YfkB-like domain DUF328 PF03883.9 gi|397781716|ref|YP_006546189.1| - 1.1e-05 24.8 0.0 1.9e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF328) FAD-oxidase_C PF02913.14 gi|397781716|ref|YP_006546189.1| - 0.094 12.0 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 FAD linked oxidases, C-terminal domain Virulence_RhuM PF13310.1 gi|397781717|ref|YP_006546190.1| - 8.3e-70 234.7 0.9 1.1e-69 234.4 0.6 1.1 1 0 0 1 1 1 1 Virulence protein RhuM family UPF0118 PF01594.11 gi|397781718|ref|YP_006546191.1| - 1.3e-40 139.3 42.8 1.5e-40 139.1 29.7 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 Sulfate_transp PF00916.15 gi|397781719|ref|YP_006546192.1| - 3.2e-45 154.3 7.2 3.2e-45 154.3 5.0 1.6 2 0 0 2 2 2 1 Sulfate transporter family Sulfate_tra_GLY PF13792.1 gi|397781719|ref|YP_006546192.1| - 1.9e-16 59.4 3.9 1.9e-16 59.4 2.7 4.3 5 0 0 5 5 5 1 Sulfate transporter N-terminal domain with GLY motif STAS PF01740.16 gi|397781719|ref|YP_006546192.1| - 0.097 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 STAS domain UPF0118 PF01594.11 gi|397781720|ref|YP_006546193.1| - 9.7e-42 143.0 35.0 1.5e-41 142.5 24.3 1.2 1 1 0 1 1 1 1 Domain of unknown function DUF20 DUF1269 PF06897.7 gi|397781721|ref|YP_006546194.1| - 1.4e-41 140.6 0.1 1.9e-41 140.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) Gly-zipper_YMGG PF13441.1 gi|397781721|ref|YP_006546194.1| - 4.3e-05 22.9 2.9 9.4e-05 21.8 2.0 1.5 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.1 gi|397781721|ref|YP_006546194.1| - 6.4e-05 22.5 2.2 6.4e-05 22.5 1.5 1.5 2 0 0 2 2 2 1 Glycine zipper DUF456 PF04306.8 gi|397781721|ref|YP_006546194.1| - 0.00085 19.3 1.5 0.0014 18.6 1.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF456) Bacteriocin_IIc PF10439.4 gi|397781721|ref|YP_006546194.1| - 0.014 15.5 1.7 0.028 14.5 1.2 1.5 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Gly-zipper_OmpA PF13436.1 gi|397781721|ref|YP_006546194.1| - 0.018 14.6 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain DUF2238 PF09997.4 gi|397781722|ref|YP_006546195.1| - 1.2e-05 24.7 5.6 4.6e-05 22.8 3.7 2.1 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF998 PF06197.8 gi|397781722|ref|YP_006546195.1| - 0.0016 17.7 8.6 0.0016 17.7 5.9 1.7 2 1 0 2 2 2 1 Protein of unknown function (DUF998) CoA_binding_3 PF13727.1 gi|397781722|ref|YP_006546195.1| - 0.51 10.1 5.6 0.56 10.0 2.6 1.9 2 1 0 2 2 2 0 CoA-binding domain Caveolin PF01146.12 gi|397781722|ref|YP_006546195.1| - 1.1 8.8 4.1 0.4 10.2 0.7 1.8 2 0 0 2 2 2 0 Caveolin DUF2085 PF09858.4 gi|397781722|ref|YP_006546195.1| - 4.7 7.3 6.5 2.6 8.1 0.4 2.7 2 1 1 3 3 3 0 Predicted membrane protein (DUF2085) UPF0114 PF03350.11 gi|397781722|ref|YP_006546195.1| - 7.7 6.4 8.8 0.24 11.3 0.5 2.3 3 0 0 3 3 3 0 Uncharacterized protein family, UPF0114 PHP_C PF13263.1 gi|397781723|ref|YP_006546196.1| - 3.1e-12 45.8 2.5 4.5e-12 45.2 0.4 2.1 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|397781723|ref|YP_006546196.1| - 7.2e-12 45.4 0.0 1.6e-11 44.3 0.0 1.6 1 1 0 1 1 1 1 PHP domain PLDc_2 PF13091.1 gi|397781724|ref|YP_006546197.1| - 7e-35 119.5 0.0 1.6e-22 79.5 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|397781724|ref|YP_006546197.1| - 9.7e-13 47.4 6.7 3.3e-06 26.7 1.0 2.6 2 0 0 2 2 2 2 Phospholipase D Active site motif PLDc_N PF13396.1 gi|397781724|ref|YP_006546197.1| - 2.2e-10 40.0 4.4 4e-10 39.1 3.1 1.4 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal CbiQ PF02361.11 gi|397781724|ref|YP_006546197.1| - 0.039 13.5 0.5 0.053 13.0 0.3 1.3 1 0 0 1 1 1 0 Cobalt transport protein DUF3810 PF12725.2 gi|397781724|ref|YP_006546197.1| - 0.046 12.6 0.4 0.069 12.0 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Glucos_trans_II PF14264.1 gi|397781724|ref|YP_006546197.1| - 1.7 7.5 6.8 2.5 7.0 4.7 1.1 1 0 0 1 1 1 0 Glucosyl transferase GtrII Sm_multidrug_ex PF06695.6 gi|397781725|ref|YP_006546198.1| - 1.9e-05 24.8 4.5 1.9e-05 24.8 3.1 2.4 1 1 2 3 3 3 1 Putative small multi-drug export protein DUF308 PF03729.8 gi|397781726|ref|YP_006546199.1| - 3.9e-17 61.9 53.9 5.4e-11 42.3 12.3 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) SpoIIAA-like PF11964.3 gi|397781727|ref|YP_006546200.1| - 2.6e-24 85.5 0.1 3e-24 85.3 0.1 1.0 1 0 0 1 1 1 1 SpoIIAA-like Tub_2 PF04525.7 gi|397781728|ref|YP_006546201.1| - 3.1e-20 72.3 0.0 4.4e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 Tubby C 2 TFX_C PF14601.1 gi|397781728|ref|YP_006546201.1| - 0.047 13.4 0.0 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 DNA_binding protein, TFX, C-term DNA_ligase_OB PF03120.11 gi|397781728|ref|YP_006546201.1| - 0.087 12.4 0.1 0.39 10.3 0.0 2.0 1 1 0 2 2 2 0 NAD-dependent DNA ligase OB-fold domain UPF0118 PF01594.11 gi|397781729|ref|YP_006546202.1| - 7.1e-39 133.6 28.8 9.3e-39 133.3 20.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF2613 PF11021.3 gi|397781729|ref|YP_006546202.1| - 0.094 12.4 0.2 0.094 12.4 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2613) Methyltransf_26 PF13659.1 gi|397781730|ref|YP_006546203.1| - 0.00014 21.8 0.7 0.00034 20.6 0.5 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397781730|ref|YP_006546203.1| - 0.011 16.2 0.2 0.022 15.3 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|397781730|ref|YP_006546203.1| - 0.015 14.4 0.0 0.021 13.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|397781730|ref|YP_006546203.1| - 0.019 14.3 0.0 0.031 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain zf-RING_3 PF14369.1 gi|397781730|ref|YP_006546203.1| - 0.14 12.1 0.2 0.14 12.1 0.2 2.9 3 0 0 3 3 3 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|397781730|ref|YP_006546203.1| - 0.77 9.7 4.9 1.2 9.1 0.3 2.6 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|397781730|ref|YP_006546203.1| - 2.6 7.4 9.7 9.2 5.6 2.9 3.1 2 1 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|397781730|ref|YP_006546203.1| - 9.3 6.0 9.2 16 5.3 0.7 2.9 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Ldh_1_N PF00056.18 gi|397781731|ref|YP_006546204.1| - 4.8e-32 110.7 0.0 6.6e-32 110.2 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|397781731|ref|YP_006546204.1| - 5.8e-27 94.5 0.0 1.1e-26 93.6 0.0 1.5 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.11 gi|397781731|ref|YP_006546204.1| - 0.018 14.3 0.0 0.037 13.3 0.0 1.5 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase EF1_GNE PF00736.14 gi|397781732|ref|YP_006546205.1| - 6.5e-18 64.2 0.1 7.4e-18 64.0 0.1 1.1 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain AA_kinase PF00696.23 gi|397781733|ref|YP_006546206.1| - 6.1e-12 45.5 0.0 4.5e-10 39.4 0.0 2.1 1 1 0 1 1 1 1 Amino acid kinase family PLDc_2 PF13091.1 gi|397781734|ref|YP_006546207.1| - 1.9e-33 114.9 0.0 4.8e-17 61.8 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain Regulator_TrmB PF11495.3 gi|397781734|ref|YP_006546207.1| - 5.9e-07 28.6 0.0 0.022 13.7 0.0 2.3 2 0 0 2 2 2 2 Archaeal transcriptional regulator TrmB PLDc PF00614.17 gi|397781734|ref|YP_006546207.1| - 3.1e-06 26.7 2.1 0.016 15.0 0.3 2.7 3 0 0 3 3 3 2 Phospholipase D Active site motif DUF1669 PF07894.7 gi|397781734|ref|YP_006546207.1| - 0.071 12.2 0.0 35 3.4 0.0 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF1669) HTH_3 PF01381.17 gi|397781735|ref|YP_006546208.1| - 5.3e-07 29.3 0.3 9e-07 28.6 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|397781735|ref|YP_006546208.1| - 7.3e-07 28.6 0.6 2.2e-06 27.1 0.3 1.8 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|397781735|ref|YP_006546208.1| - 2e-05 23.7 1.3 2.9e-05 23.2 0.9 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|397781735|ref|YP_006546208.1| - 2.7e-05 23.8 0.0 3.7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|397781735|ref|YP_006546208.1| - 3.5e-05 23.0 0.1 5.6e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_31 PF13560.1 gi|397781735|ref|YP_006546208.1| - 0.00022 21.3 0.8 0.00036 20.6 0.5 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|397781735|ref|YP_006546208.1| - 0.00027 20.9 0.1 0.00036 20.5 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|397781735|ref|YP_006546208.1| - 0.002 18.3 0.0 0.002 18.3 0.0 2.0 3 0 0 3 3 2 1 Cro/C1-type HTH DNA-binding domain MarR_2 PF12802.2 gi|397781735|ref|YP_006546208.1| - 0.0026 17.4 0.2 0.0048 16.5 0.1 1.6 1 1 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|397781735|ref|YP_006546208.1| - 0.0027 17.1 0.5 0.0039 16.6 0.4 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|397781735|ref|YP_006546208.1| - 0.0037 16.8 0.1 0.0068 16.0 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_10 PF04967.7 gi|397781735|ref|YP_006546208.1| - 0.0061 16.1 0.1 0.0097 15.4 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Fe_dep_repress PF01325.14 gi|397781735|ref|YP_006546208.1| - 0.008 16.1 0.2 0.014 15.3 0.2 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|397781735|ref|YP_006546208.1| - 0.0099 15.8 0.3 0.026 14.5 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain DUF134 PF02001.11 gi|397781735|ref|YP_006546208.1| - 0.011 15.5 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_Tnp_1 PF01527.15 gi|397781735|ref|YP_006546208.1| - 0.013 15.4 0.1 0.28 11.1 0.0 2.2 2 0 0 2 2 2 0 Transposase HTH_17 PF12728.2 gi|397781735|ref|YP_006546208.1| - 0.016 15.4 0.1 0.15 12.3 0.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|397781735|ref|YP_006546208.1| - 0.021 14.4 0.1 0.13 11.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Phage_NinH PF06322.6 gi|397781735|ref|YP_006546208.1| - 0.038 13.6 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 Phage NinH protein CENP-B_N PF04218.8 gi|397781735|ref|YP_006546208.1| - 0.064 12.6 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Phage_CI_repr PF07022.8 gi|397781735|ref|YP_006546208.1| - 0.066 13.3 0.1 0.16 12.0 0.0 1.6 1 1 1 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain KorB PF08535.5 gi|397781735|ref|YP_006546208.1| - 0.072 13.2 0.1 0.14 12.3 0.0 1.5 2 0 0 2 2 1 0 KorB domain HTH_1 PF00126.22 gi|397781735|ref|YP_006546208.1| - 0.087 12.5 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Phage_AlpA PF05930.7 gi|397781735|ref|YP_006546208.1| - 0.093 12.4 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_20 PF12840.2 gi|397781735|ref|YP_006546208.1| - 0.098 12.4 0.1 0.24 11.2 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|397781735|ref|YP_006546208.1| - 0.11 11.7 0.1 0.22 10.7 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.5 gi|397781735|ref|YP_006546208.1| - 0.13 11.9 0.0 0.31 10.6 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|397781735|ref|YP_006546208.1| - 0.14 11.8 0.1 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|397781736|ref|YP_006546209.1| - 3.2e-07 29.6 0.0 4.7e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|397781736|ref|YP_006546209.1| - 0.00012 21.6 0.0 0.00014 21.4 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|397781736|ref|YP_006546209.1| - 0.00034 20.3 0.1 0.00044 19.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|397781736|ref|YP_006546209.1| - 0.004 16.6 0.1 0.031 13.8 0.1 1.9 1 1 1 2 2 2 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|397781736|ref|YP_006546209.1| - 0.0042 17.3 0.0 0.005 17.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|397781736|ref|YP_006546209.1| - 0.0053 16.2 0.2 0.0087 15.5 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|397781736|ref|YP_006546209.1| - 0.0055 16.3 0.0 0.0061 16.2 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|397781736|ref|YP_006546209.1| - 0.011 15.2 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|397781736|ref|YP_006546209.1| - 0.011 15.1 0.1 0.015 14.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|397781736|ref|YP_006546209.1| - 0.011 15.3 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2540 PF10802.3 gi|397781736|ref|YP_006546209.1| - 0.039 13.6 0.2 0.34 10.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2540) HTH_9 PF08221.6 gi|397781736|ref|YP_006546209.1| - 0.081 12.8 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|397781736|ref|YP_006546209.1| - 0.088 12.6 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2513 PF10711.4 gi|397781736|ref|YP_006546209.1| - 0.091 12.8 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Sigma70_r4_2 PF08281.7 gi|397781736|ref|YP_006546209.1| - 0.094 12.1 0.0 0.18 11.2 0.0 1.4 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.1 gi|397781736|ref|YP_006546209.1| - 0.13 12.3 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Tox-ART-HYE1 PF15634.1 gi|397781737|ref|YP_006546210.1| - 0.02 13.8 0.0 0.024 13.5 0.0 1.1 1 0 0 1 1 1 0 HYE1 signature containing ADP-ribosyltransferase tRNA_anti-codon PF01336.20 gi|397781737|ref|YP_006546210.1| - 0.077 12.8 0.2 0.77 9.6 0.2 2.2 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.2 gi|397781737|ref|YP_006546210.1| - 0.35 10.3 1.8 0.52 9.7 0.0 1.8 1 1 1 2 2 2 0 tRNA_anti-like FeThRed_B PF02943.10 gi|397781740|ref|YP_006546213.1| - 1.8e-23 82.3 0.0 1.8e-23 82.3 0.0 1.4 2 0 0 2 2 2 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.10 gi|397781740|ref|YP_006546213.1| - 0.0015 17.9 2.1 0.0037 16.6 1.4 1.6 1 0 0 1 1 1 1 RecR protein Rubredoxin PF00301.15 gi|397781740|ref|YP_006546213.1| - 0.089 12.6 8.4 4.8 7.1 5.8 2.6 1 1 0 1 1 1 0 Rubredoxin zf-like PF04071.7 gi|397781740|ref|YP_006546213.1| - 0.87 9.3 3.9 0.77 9.4 0.4 2.1 2 0 0 2 2 2 0 Cysteine-rich small domain Glutaredoxin PF00462.19 gi|397781741|ref|YP_006546214.1| - 2e-11 43.6 0.1 3.2e-11 43.0 0.0 1.4 2 0 0 2 2 2 1 Glutaredoxin GST_N_2 PF13409.1 gi|397781741|ref|YP_006546214.1| - 0.0028 17.6 0.0 0.0039 17.1 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.1 gi|397781741|ref|YP_006546214.1| - 0.016 15.3 0.0 0.02 15.1 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|397781741|ref|YP_006546214.1| - 0.023 14.9 0.0 0.024 14.9 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.1 gi|397781741|ref|YP_006546214.1| - 0.038 13.7 0.0 0.069 12.9 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin domain ArsC PF03960.10 gi|397781741|ref|YP_006546214.1| - 0.12 12.4 0.1 7.4 6.6 0.0 2.1 1 1 1 2 2 2 0 ArsC family Lamp PF01299.12 gi|590000756|ref|YP_009001461.1| - 4.7 6.2 9.0 5.4 6.0 6.2 1.1 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) PIN PF01850.16 gi|397781742|ref|YP_006546215.1| - 0.00057 20.2 0.0 0.0014 18.9 0.0 1.8 1 1 0 1 1 1 1 PIN domain AMP-binding PF00501.23 gi|397781743|ref|YP_006546216.1| - 4.9e-18 64.7 0.0 6.5e-18 64.3 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Na_sulph_symp PF00939.14 gi|397781744|ref|YP_006546217.1| - 4.7e-89 299.4 50.1 5.7e-89 299.1 34.7 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|397781744|ref|YP_006546217.1| - 7.5e-18 64.2 51.3 2e-07 29.9 11.1 3.1 2 1 1 3 3 3 3 Citrate transporter PsbQ PF05757.6 gi|397781744|ref|YP_006546217.1| - 0.14 11.5 0.4 0.33 10.3 0.0 1.7 2 0 0 2 2 2 0 Oxygen evolving enhancer protein 3 (PsbQ) DUF3821 PF12863.2 gi|397781745|ref|YP_006546218.1| - 9.5e-23 80.9 0.0 1.3e-22 80.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) HEAT_2 PF13646.1 gi|397781746|ref|YP_006546219.1| - 1.5e-17 63.6 4.8 3.1e-17 62.6 2.9 1.7 1 1 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.11 gi|397781746|ref|YP_006546219.1| - 3.3e-12 45.6 14.2 1.4e-06 28.1 0.2 3.2 3 0 0 3 3 3 2 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|397781746|ref|YP_006546219.1| - 1.4e-09 37.2 6.0 0.0013 18.6 0.0 3.6 3 1 1 4 4 4 3 HEAT repeat HEAT_EZ PF13513.1 gi|397781746|ref|YP_006546219.1| - 1.2e-07 32.0 9.7 0.0033 17.8 1.8 2.7 2 1 1 3 3 3 2 HEAT-like repeat Arm PF00514.18 gi|397781746|ref|YP_006546219.1| - 0.0035 17.1 0.1 0.091 12.6 0.0 2.3 1 1 1 2 2 2 1 Armadillo/beta-catenin-like repeat XPC-binding PF09280.6 gi|397781746|ref|YP_006546219.1| - 0.1 12.0 0.0 6 6.4 0.0 2.1 2 0 0 2 2 2 0 XPC-binding domain DUF2984 PF11203.3 gi|397781746|ref|YP_006546219.1| - 0.18 11.9 2.0 0.16 12.0 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2984) DUF333 PF03891.10 gi|397781747|ref|YP_006546220.1| - 2e-21 75.4 0.1 5e-21 74.2 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF333) AAA_10 PF12846.2 gi|397781747|ref|YP_006546220.1| - 0.0013 18.1 2.2 0.32 10.3 0.0 3.6 4 0 0 4 4 4 1 AAA-like domain AAA_25 PF13481.1 gi|397781747|ref|YP_006546220.1| - 0.0086 15.4 0.9 35 3.7 0.0 3.9 3 1 1 4 4 4 0 AAA domain DUF2846 PF11008.3 gi|397781747|ref|YP_006546220.1| - 0.081 12.7 0.0 35 4.2 0.0 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF2846) PapC_C PF13953.1 gi|397781747|ref|YP_006546220.1| - 0.16 11.6 5.4 5.7 6.6 0.0 3.9 4 1 0 4 4 4 0 PapC C-terminal domain DUF1522 PF07482.6 gi|397781747|ref|YP_006546220.1| - 0.17 12.0 1.4 0.46 10.6 0.1 2.3 3 0 0 3 3 3 0 Domain of Unknown Function (DUF1522) RHH_1 PF01402.16 gi|397781749|ref|YP_006546222.1| - 0.5 10.3 3.0 17 5.5 0.1 2.9 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family Plasmid_stabil PF05016.9 gi|397781750|ref|YP_006546223.1| - 2.1e-09 37.6 0.2 2.4e-09 37.4 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Plasmid_killer PF05015.8 gi|397781750|ref|YP_006546223.1| - 0.0072 16.4 0.0 0.016 15.3 0.0 1.6 1 1 0 1 1 1 1 Plasmid maintenance system killer protein KTSC PF13619.1 gi|397781752|ref|YP_006546225.1| - 7.4e-23 79.9 0.1 8.8e-23 79.7 0.1 1.0 1 0 0 1 1 1 1 KTSC domain KTSC PF13619.1 gi|397781753|ref|YP_006546226.1| - 2.2e-17 62.4 0.0 2.6e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 KTSC domain PAS_9 PF13426.1 gi|397781754|ref|YP_006546227.1| - 4.5e-40 136.2 0.0 2e-14 53.8 0.1 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|397781754|ref|YP_006546227.1| - 5.5e-33 113.2 4.5 9.5e-13 48.1 0.0 3.8 4 0 0 4 4 4 3 PAS fold PAS PF00989.19 gi|397781754|ref|YP_006546227.1| - 1.7e-29 101.8 0.0 4.3e-10 39.3 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|397781754|ref|YP_006546227.1| - 3.3e-21 74.3 0.1 4.7e-08 32.5 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|397781754|ref|YP_006546227.1| - 6.6e-13 48.5 0.0 0.00019 21.4 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_7 PF12860.2 gi|397781754|ref|YP_006546227.1| - 1.4e-11 44.4 0.2 1.4e-05 25.0 0.0 4.2 4 1 0 4 4 3 2 PAS fold HTH_IclR PF09339.5 gi|397781754|ref|YP_006546227.1| - 6.6e-07 28.8 0.8 3e-06 26.7 0.1 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|397781754|ref|YP_006546227.1| - 8.7e-07 28.6 0.0 8.7e-07 28.6 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain GAF_2 PF13185.1 gi|397781754|ref|YP_006546227.1| - 1.8e-06 28.5 1.6 0.0024 18.3 0.1 2.5 2 0 0 2 2 2 2 GAF domain MarR_2 PF12802.2 gi|397781754|ref|YP_006546227.1| - 2.8e-05 23.6 0.1 7.8e-05 22.2 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|397781754|ref|YP_006546227.1| - 5.1e-05 22.7 0.1 0.00013 21.4 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain PAS_10 PF13596.1 gi|397781754|ref|YP_006546227.1| - 0.00018 21.7 0.0 0.002 18.3 0.0 2.5 2 0 0 2 2 2 1 PAS domain HTH_5 PF01022.15 gi|397781754|ref|YP_006546227.1| - 0.00046 19.7 0.0 0.00084 18.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|397781754|ref|YP_006546227.1| - 0.00064 19.3 0.1 0.0018 17.9 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|397781754|ref|YP_006546227.1| - 0.00067 19.2 0.0 0.0023 17.5 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain GAF_3 PF13492.1 gi|397781754|ref|YP_006546227.1| - 0.00091 19.3 0.4 0.3 11.2 0.1 4.0 3 1 0 3 3 3 1 GAF domain HTH_Crp_2 PF13545.1 gi|397781754|ref|YP_006546227.1| - 0.0012 18.5 0.2 0.013 15.2 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain KorB PF08535.5 gi|397781754|ref|YP_006546227.1| - 0.002 18.2 0.0 0.0054 16.8 0.0 1.7 1 0 0 1 1 1 1 KorB domain HTH_24 PF13412.1 gi|397781754|ref|YP_006546227.1| - 0.0025 17.1 0.0 0.0046 16.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|397781754|ref|YP_006546227.1| - 0.0059 16.0 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|397781754|ref|YP_006546227.1| - 0.014 14.9 0.1 0.035 13.7 0.0 1.7 1 0 0 1 1 1 0 HTH domain MarR PF01047.17 gi|397781754|ref|YP_006546227.1| - 0.035 13.8 0.1 0.069 12.8 0.0 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|397781754|ref|YP_006546227.1| - 0.041 13.9 0.1 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.1 gi|397781754|ref|YP_006546227.1| - 0.095 12.7 0.2 0.48 10.4 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|397781754|ref|YP_006546227.1| - 0.1 12.8 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.18 gi|397781754|ref|YP_006546227.1| - 0.13 11.9 0.0 3.6 7.3 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family NUMOD1 PF07453.8 gi|397781754|ref|YP_006546227.1| - 0.14 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain GerE PF00196.14 gi|397781754|ref|YP_006546227.1| - 0.15 11.3 0.1 0.31 10.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HEAT_2 PF13646.1 gi|397781755|ref|YP_006546228.1| - 2e-13 50.3 3.3 2.1e-07 31.1 0.4 2.2 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.11 gi|397781755|ref|YP_006546228.1| - 6.9e-10 38.4 15.1 4.1e-06 26.7 0.1 4.3 4 0 0 4 4 4 3 PBS lyase HEAT-like repeat Arm PF00514.18 gi|397781755|ref|YP_006546228.1| - 5.6e-05 22.8 1.2 0.093 12.5 0.0 3.5 3 1 1 4 4 4 2 Armadillo/beta-catenin-like repeat ERAP1_C PF11838.3 gi|397781755|ref|YP_006546228.1| - 0.092 11.9 0.0 0.097 11.8 0.0 1.1 1 0 0 1 1 1 0 ERAP1-like C-terminal domain HEAT_EZ PF13513.1 gi|397781755|ref|YP_006546228.1| - 1.8 9.1 9.2 1.1 9.8 0.8 3.2 1 1 3 4 4 4 0 HEAT-like repeat TarH PF02203.10 gi|397781757|ref|YP_006546230.1| - 0.022 14.5 0.4 0.038 13.8 0.3 1.4 1 0 0 1 1 1 0 Tar ligand binding domain homologue TPR_12 PF13424.1 gi|397781757|ref|YP_006546230.1| - 0.032 14.1 3.2 0.065 13.1 2.2 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat Tape_meas_lam_C PF09718.5 gi|397781757|ref|YP_006546230.1| - 0.036 13.9 1.4 0.25 11.2 0.1 2.4 1 1 2 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) DUF553 PF04473.7 gi|397781758|ref|YP_006546231.1| - 0.11 11.8 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase-like domain TauE PF01925.14 gi|397781759|ref|YP_006546232.1| - 3e-39 134.8 46.8 3e-39 134.8 32.4 2.0 1 1 1 2 2 2 1 Sulfite exporter TauE/SafE DUF677 PF05055.7 gi|397781759|ref|YP_006546232.1| - 0.33 9.5 1.4 0.61 8.6 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF677) SepZ PF06066.6 gi|397781759|ref|YP_006546232.1| - 2 8.4 20.5 0.21 11.5 2.3 3.6 3 1 0 3 3 3 0 SepZ DUF3417 PF11897.3 gi|397781760|ref|YP_006546233.1| - 4.7e-36 123.3 0.2 1.7e-35 121.5 0.1 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.15 gi|397781760|ref|YP_006546233.1| - 2.1e-19 68.9 0.0 2.7e-13 48.7 0.0 3.1 3 0 0 3 3 3 3 Carbohydrate phosphorylase ABC_tran PF00005.22 gi|397781761|ref|YP_006546234.1| - 2.6e-24 86.0 0.0 3.5e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|397781761|ref|YP_006546234.1| - 1.4e-14 54.7 0.1 5e-10 39.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|397781761|ref|YP_006546234.1| - 2.7e-05 23.4 0.0 0.00053 19.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|397781761|ref|YP_006546234.1| - 0.0098 16.2 0.1 0.015 15.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|397781761|ref|YP_006546234.1| - 0.017 14.6 0.1 0.029 13.8 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|397781761|ref|YP_006546234.1| - 0.017 15.9 0.0 0.098 13.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|397781761|ref|YP_006546234.1| - 0.049 13.4 0.0 0.081 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|397781761|ref|YP_006546234.1| - 0.088 12.3 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|397781761|ref|YP_006546234.1| - 0.12 11.7 0.2 0.27 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain Mg_chelatase PF01078.16 gi|397781761|ref|YP_006546234.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SMC_N PF02463.14 gi|397781761|ref|YP_006546234.1| - 0.16 11.1 0.1 1.1 8.4 0.0 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|397781761|ref|YP_006546234.1| - 0.18 10.2 0.0 1.4 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF4523 PF15023.1 gi|397781762|ref|YP_006546235.1| - 0.092 12.2 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4523) UPF0029 PF01205.14 gi|590000758|ref|YP_009001463.1| - 1.1e-24 86.1 0.0 1.3e-24 85.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DSPc PF00782.15 gi|397781763|ref|YP_006546236.1| - 1e-10 41.3 0.0 1.4e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|397781763|ref|YP_006546236.1| - 0.017 14.4 0.0 0.025 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein-tyrosine phosphatase ROK PF00480.15 gi|397781764|ref|YP_006546237.1| - 8.8e-41 139.6 0.2 1.2e-40 139.2 0.1 1.1 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.16 gi|397781764|ref|YP_006546237.1| - 0.023 14.0 0.1 0.034 13.4 0.0 1.2 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain DUF4445 PF14574.1 gi|397781764|ref|YP_006546237.1| - 0.03 12.5 0.6 0.042 12.0 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4445) Glucokinase PF02685.11 gi|397781764|ref|YP_006546237.1| - 0.034 12.9 0.0 0.067 11.9 0.0 1.5 1 1 0 1 1 1 0 Glucokinase Transp_cyt_pur PF02133.10 gi|397781764|ref|YP_006546237.1| - 0.048 12.2 1.0 0.07 11.6 0.7 1.2 1 0 0 1 1 1 0 Permease for cytosine/purines, uracil, thiamine, allantoin Hexokinase_1 PF00349.16 gi|397781764|ref|YP_006546237.1| - 0.16 11.3 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 Hexokinase FeoA PF04023.9 gi|397781765|ref|YP_006546238.1| - 4.1e-18 65.1 1.8 4.5e-18 64.9 1.3 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.13 gi|397781766|ref|YP_006546239.1| - 3.2e-50 169.4 0.0 4.8e-50 168.8 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|397781766|ref|YP_006546239.1| - 1.7e-28 98.7 24.2 2.8e-15 56.1 4.6 3.4 4 0 0 4 4 4 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|397781766|ref|YP_006546239.1| - 7.3e-16 58.1 0.0 1.2e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|397781766|ref|YP_006546239.1| - 6e-13 48.0 0.6 6e-13 48.0 0.4 2.9 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus GTP_EFTU PF00009.22 gi|397781766|ref|YP_006546239.1| - 0.0035 16.8 0.0 0.015 14.7 0.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.5 gi|397781766|ref|YP_006546239.1| - 0.0044 16.2 0.0 0.0071 15.5 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|397781766|ref|YP_006546239.1| - 0.008 16.6 0.0 0.014 15.8 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein PduV-EutP PF10662.4 gi|397781766|ref|YP_006546239.1| - 0.023 14.2 0.0 0.073 12.5 0.0 1.8 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AIG1 PF04548.11 gi|397781766|ref|YP_006546239.1| - 0.023 13.8 0.0 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 AIG1 family Gtr1_RagA PF04670.7 gi|397781766|ref|YP_006546239.1| - 0.024 13.8 0.0 0.047 12.8 0.0 1.5 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region FUSC-like PF12805.2 gi|397781766|ref|YP_006546239.1| - 3.9 6.3 5.7 9.1 5.1 4.0 1.5 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS Fe_dep_repress PF01325.14 gi|397781767|ref|YP_006546240.1| - 3e-18 65.5 0.1 4.1e-18 65.0 0.1 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|397781767|ref|YP_006546240.1| - 7.5e-17 60.7 0.2 1.1e-16 60.2 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR PF01047.17 gi|397781767|ref|YP_006546240.1| - 2.3e-07 30.4 0.0 4.9e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|397781767|ref|YP_006546240.1| - 6.7e-07 28.8 0.1 4e-06 26.3 0.0 2.2 3 0 0 3 3 3 1 MarR family HTH_24 PF13412.1 gi|397781767|ref|YP_006546240.1| - 9e-06 24.9 0.2 1.6e-05 24.1 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|397781767|ref|YP_006546240.1| - 4.4e-05 23.7 0.0 0.00024 21.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|397781767|ref|YP_006546240.1| - 4.5e-05 23.0 0.0 0.00034 20.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|397781767|ref|YP_006546240.1| - 7e-05 22.4 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|397781767|ref|YP_006546240.1| - 0.00072 19.1 0.1 0.0039 16.7 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|397781767|ref|YP_006546240.1| - 0.0015 18.2 0.0 0.0032 17.2 0.0 1.7 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_12 PF08461.5 gi|397781767|ref|YP_006546240.1| - 0.0029 17.2 0.0 0.0052 16.4 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain GntR PF00392.16 gi|397781767|ref|YP_006546240.1| - 0.0071 15.7 0.0 0.015 14.6 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family B-block_TFIIIC PF04182.7 gi|397781767|ref|YP_006546240.1| - 0.0077 16.0 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC Rrf2 PF02082.15 gi|397781767|ref|YP_006546240.1| - 0.008 16.2 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.1 gi|397781767|ref|YP_006546240.1| - 0.0086 15.8 0.0 0.038 13.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix FeoC PF09012.5 gi|397781767|ref|YP_006546240.1| - 0.016 14.8 0.0 0.032 13.9 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_10 PF04967.7 gi|397781767|ref|YP_006546240.1| - 0.025 14.1 0.0 0.054 13.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_20 PF12840.2 gi|397781767|ref|YP_006546240.1| - 0.045 13.5 0.1 0.33 10.7 0.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|397781767|ref|YP_006546240.1| - 0.061 12.8 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain DUF2250 PF10007.4 gi|397781767|ref|YP_006546240.1| - 0.069 13.0 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_29 PF13551.1 gi|397781767|ref|YP_006546240.1| - 0.11 12.5 0.0 0.19 11.9 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn helix Methyltransf_26 PF13659.1 gi|397781768|ref|YP_006546241.1| - 4.6e-11 42.7 0.1 8.4e-11 41.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|397781768|ref|YP_006546241.1| - 6.8e-10 39.5 0.3 1.3e-09 38.5 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|397781768|ref|YP_006546241.1| - 1.1e-09 38.0 0.0 1.3e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|397781768|ref|YP_006546241.1| - 1.1e-07 31.1 0.0 1.5e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.1 gi|397781768|ref|YP_006546241.1| - 2.8e-06 27.1 0.0 7.1e-06 25.8 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|397781768|ref|YP_006546241.1| - 2.9e-05 24.3 0.0 4.3e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|397781768|ref|YP_006546241.1| - 3.2e-05 24.3 0.0 4.8e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|397781768|ref|YP_006546241.1| - 0.00014 21.4 0.0 0.00019 21.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|397781768|ref|YP_006546241.1| - 0.00044 19.6 0.0 0.00066 19.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW UPF0020 PF01170.13 gi|397781768|ref|YP_006546241.1| - 0.0006 19.4 0.0 0.00089 18.8 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|397781768|ref|YP_006546241.1| - 0.00075 19.9 0.0 0.0011 19.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|397781768|ref|YP_006546241.1| - 0.0012 18.3 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|397781768|ref|YP_006546241.1| - 0.021 15.6 0.0 0.039 14.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain GCD14 PF08704.5 gi|397781768|ref|YP_006546241.1| - 0.055 12.9 0.0 0.079 12.4 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_32 PF13679.1 gi|397781768|ref|YP_006546241.1| - 0.066 12.8 0.0 0.095 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|397781768|ref|YP_006546241.1| - 0.14 11.2 0.0 0.19 10.7 0.0 1.1 1 0 0 1 1 1 0 Putative methyltransferase DUF72 PF01904.13 gi|397781769|ref|YP_006546242.1| - 9.2e-42 143.3 0.0 1.1e-41 143.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF367 PF04034.8 gi|397781770|ref|YP_006546243.1| - 2e-40 137.3 0.0 2.7e-40 136.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|397781770|ref|YP_006546243.1| - 9e-05 21.9 0.1 0.00013 21.4 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Nuc_deoxyrib_tr PF05014.10 gi|397781771|ref|YP_006546244.1| - 1.7e-31 108.3 0.0 3.7e-31 107.3 0.0 1.5 2 0 0 2 2 2 1 Nucleoside 2-deoxyribosyltransferase DUF523 PF04463.7 gi|397781771|ref|YP_006546244.1| - 5.8e-11 42.3 0.0 1e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF523) TIR_2 PF13676.1 gi|397781771|ref|YP_006546244.1| - 0.00091 19.3 0.2 0.0024 17.9 0.1 1.7 1 1 0 1 1 1 1 TIR domain PAS_4 PF08448.5 gi|397781772|ref|YP_006546245.1| - 1.7e-56 188.9 0.1 2.4e-15 56.4 0.0 4.2 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.1 gi|397781772|ref|YP_006546245.1| - 2.5e-48 162.7 0.0 2.7e-13 50.1 0.0 4.1 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|397781772|ref|YP_006546245.1| - 3.8e-38 129.7 0.0 4.6e-10 39.2 0.0 4.3 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|397781772|ref|YP_006546245.1| - 2.2e-23 81.2 0.8 0.00019 21.1 0.1 4.5 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|397781772|ref|YP_006546245.1| - 2.2e-20 72.5 0.0 5.8e-08 32.7 0.0 4.2 4 0 0 4 4 4 3 PAS fold HTH_IclR PF09339.5 gi|397781772|ref|YP_006546245.1| - 3.1e-08 33.0 0.0 6.9e-08 31.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|397781772|ref|YP_006546245.1| - 3.8e-06 26.1 0.0 9.7e-06 24.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TBPIP PF07106.8 gi|397781772|ref|YP_006546245.1| - 4.4e-05 23.0 0.0 7.8e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) PAS_7 PF12860.2 gi|397781772|ref|YP_006546245.1| - 6.8e-05 22.8 0.8 17 5.4 0.1 5.0 4 1 0 4 4 4 0 PAS fold HTH_20 PF12840.2 gi|397781772|ref|YP_006546245.1| - 0.0002 21.1 0.2 0.00071 19.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|397781772|ref|YP_006546245.1| - 0.00023 20.6 0.3 0.0016 18.0 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_5 PF01022.15 gi|397781772|ref|YP_006546245.1| - 0.00055 19.5 0.0 0.0013 18.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|397781772|ref|YP_006546245.1| - 0.00059 19.4 0.1 0.0014 18.2 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|397781772|ref|YP_006546245.1| - 0.00073 19.1 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|397781772|ref|YP_006546245.1| - 0.0016 18.0 0.0 0.0067 16.0 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_3 PF01381.17 gi|397781772|ref|YP_006546245.1| - 0.0025 17.6 0.0 0.0062 16.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_38 PF13936.1 gi|397781772|ref|YP_006546245.1| - 0.0028 17.1 0.0 0.01 15.3 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|397781772|ref|YP_006546245.1| - 0.018 15.2 0.0 0.039 14.1 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain TrmB PF01978.14 gi|397781772|ref|YP_006546245.1| - 0.019 14.6 0.1 0.056 13.1 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_31 PF13560.1 gi|397781772|ref|YP_006546245.1| - 0.02 15.0 0.0 0.068 13.3 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain DUF977 PF06163.6 gi|397781772|ref|YP_006546245.1| - 0.022 14.5 0.0 0.048 13.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_28 PF13518.1 gi|397781772|ref|YP_006546245.1| - 0.03 14.3 0.0 0.1 12.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|397781772|ref|YP_006546245.1| - 0.064 13.5 0.0 0.33 11.3 0.0 2.3 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_7 PF02796.10 gi|397781772|ref|YP_006546245.1| - 0.071 12.9 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Crp_2 PF13545.1 gi|397781772|ref|YP_006546245.1| - 0.076 12.8 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|397781772|ref|YP_006546245.1| - 0.084 13.0 0.1 0.27 11.4 0.0 1.9 2 0 0 2 2 1 0 Winged helix-turn helix RPA_C PF08784.6 gi|397781772|ref|YP_006546245.1| - 0.096 13.1 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_10 PF04967.7 gi|397781772|ref|YP_006546245.1| - 0.1 12.2 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_19 PF12844.2 gi|397781772|ref|YP_006546245.1| - 0.12 12.4 0.0 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|397781772|ref|YP_006546245.1| - 0.14 12.3 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain LemA PF04011.7 gi|397781773|ref|YP_006546246.1| - 9.7e-54 181.2 0.0 1.2e-53 181.0 0.0 1.0 1 0 0 1 1 1 1 LemA family Trp_repressor PF01371.14 gi|397781773|ref|YP_006546246.1| - 0.016 15.1 0.2 2.5 8.0 0.0 2.3 2 0 0 2 2 2 0 Trp repressor protein IncA PF04156.9 gi|397781773|ref|YP_006546246.1| - 0.068 12.7 0.7 0.2 11.2 0.5 1.8 1 1 0 1 1 1 0 IncA protein THOC7 PF05615.8 gi|397781773|ref|YP_006546246.1| - 0.13 12.5 0.1 0.96 9.7 0.1 2.0 1 1 0 1 1 1 0 Tho complex subunit 7 DUF1628 PF07790.6 gi|397781773|ref|YP_006546246.1| - 0.18 12.5 1.7 0.37 11.5 1.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) DUF2207 PF09972.4 gi|397781774|ref|YP_006546247.1| - 9.5e-93 311.5 0.0 1.1e-92 311.2 0.0 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) U5_2-snRNA_bdg PF10597.4 gi|397781774|ref|YP_006546247.1| - 0.21 11.1 0.4 0.75 9.3 0.2 1.8 2 0 0 2 2 2 0 U5-snRNA binding site 2 of PrP8 Acetyltransf_3 PF13302.1 gi|397781776|ref|YP_006546249.1| - 3.7e-34 117.9 0.0 4.8e-34 117.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|397781776|ref|YP_006546249.1| - 1.5e-09 37.7 0.6 3e-09 36.7 0.4 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|397781776|ref|YP_006546249.1| - 4.8e-09 36.3 0.0 5.9e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|397781777|ref|YP_006546250.1| - 4.3e-29 101.4 0.0 5.6e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|397781777|ref|YP_006546250.1| - 3.2e-09 36.6 0.5 5.3e-09 35.9 0.4 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|397781777|ref|YP_006546250.1| - 3e-08 33.7 0.0 4.4e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Gp_dh_C PF02800.15 gi|397781778|ref|YP_006546251.1| - 5.2e-23 81.2 0.0 9.7e-23 80.3 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|397781778|ref|YP_006546251.1| - 1.2e-19 70.7 0.5 5.6e-19 68.5 0.2 2.1 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|397781778|ref|YP_006546251.1| - 4.7e-12 45.9 0.2 9.8e-12 44.8 0.2 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus TrkA_N PF02254.13 gi|397781778|ref|YP_006546251.1| - 6.3e-06 26.1 0.4 3.8e-05 23.6 0.2 2.3 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|397781778|ref|YP_006546251.1| - 4.5e-05 22.6 0.2 0.0051 15.9 0.2 2.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|397781778|ref|YP_006546251.1| - 8.5e-05 22.8 0.1 0.00021 21.5 0.1 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|397781778|ref|YP_006546251.1| - 0.00049 20.4 0.1 0.0013 19.1 0.1 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|397781778|ref|YP_006546251.1| - 0.0015 17.6 0.2 0.0023 17.0 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|397781778|ref|YP_006546251.1| - 0.0038 17.7 0.2 0.024 15.1 0.1 2.4 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DUF2630 PF10944.3 gi|397781778|ref|YP_006546251.1| - 0.13 12.3 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2630) tRNA-synt_1b PF00579.20 gi|397781779|ref|YP_006546252.1| - 2.1e-53 181.3 0.0 2.7e-53 180.9 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|397781779|ref|YP_006546252.1| - 1.2e-05 24.1 0.0 0.11 11.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (K) RIO1 PF01163.17 gi|397781780|ref|YP_006546253.1| - 1.4e-58 197.3 0.0 2e-58 196.8 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|397781780|ref|YP_006546253.1| - 2.8e-07 30.5 0.3 0.00016 21.4 0.0 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|397781780|ref|YP_006546253.1| - 3.6e-05 22.9 0.0 0.00044 19.3 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|397781780|ref|YP_006546253.1| - 0.00013 21.2 0.0 0.00023 20.3 0.0 1.3 1 1 0 1 1 1 1 Protein kinase domain KH_1 PF00013.24 gi|397781781|ref|YP_006546254.1| - 6.6e-20 70.5 10.6 2.2e-12 46.4 1.3 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|397781781|ref|YP_006546254.1| - 1.1e-09 37.7 9.6 4.4e-06 26.2 1.4 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|397781781|ref|YP_006546254.1| - 3.2e-05 23.4 5.6 0.0004 19.9 0.4 2.5 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|397781781|ref|YP_006546254.1| - 0.7 9.5 6.1 1.2 8.8 0.1 3.1 2 2 1 3 3 3 0 KH domain DEAD PF00270.24 gi|397781782|ref|YP_006546255.1| - 3.5e-27 94.9 0.0 7.5e-27 93.8 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|397781782|ref|YP_006546255.1| - 7.2e-10 38.6 0.0 1.5e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|397781782|ref|YP_006546255.1| - 1e-05 25.6 0.3 3.5e-05 23.8 0.2 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|397781782|ref|YP_006546255.1| - 6.5e-05 22.8 0.0 0.00013 21.8 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Sec63 PF02889.11 gi|397781782|ref|YP_006546255.1| - 8.1e-05 21.9 0.0 0.0036 16.5 0.0 2.0 2 0 0 2 2 2 1 Sec63 Brl domain DNA_pol_lambd_f PF10391.4 gi|397781782|ref|YP_006546255.1| - 0.12 11.9 0.0 0.28 10.7 0.0 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda CGI-121 PF08617.5 gi|397781783|ref|YP_006546256.1| - 3e-06 26.9 0.0 4.7e-06 26.3 0.0 1.3 1 1 0 1 1 1 1 Kinase binding protein CGI-121 MoCF_biosynth PF00994.19 gi|397781784|ref|YP_006546257.1| - 7.3e-35 119.4 0.1 8.7e-35 119.2 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain