# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- BioW PF03744.13 gi|134045047|ref|YP_001096533.1| - 2e-79 266.5 2.9 2.3e-79 266.4 2.9 1.0 1 0 0 1 1 1 1 6-carboxyhexanoate--CoA ligase Abhydro_lipase PF04083.16 gi|134045047|ref|YP_001096533.1| - 0.051 13.1 0.0 0.096 12.3 0.0 1.5 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region TetR_C_10 PF16295.5 gi|134045047|ref|YP_001096533.1| - 0.068 13.5 0.1 0.15 12.4 0.1 1.7 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Peptidase_S76 PF13611.6 gi|134045047|ref|YP_001096533.1| - 0.11 12.9 3.2 0.31 11.4 1.9 2.3 2 1 0 2 2 2 0 Serine peptidase of plant viral polyprotein, P1 TnsE_C PF18623.1 gi|134045047|ref|YP_001096533.1| - 0.77 9.7 7.4 1.8 8.4 0.5 2.8 2 1 1 3 3 3 0 TnsE C-terminal domain Aminotran_1_2 PF00155.21 gi|134045048|ref|YP_001096534.1| - 1.1e-59 202.5 0.0 1.3e-59 202.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|134045048|ref|YP_001096534.1| - 2.9e-08 32.6 0.0 4.5e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|134045048|ref|YP_001096534.1| - 3e-07 30.1 0.0 4.6e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|134045048|ref|YP_001096534.1| - 0.00018 20.9 0.0 0.00041 19.7 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|134045048|ref|YP_001096534.1| - 0.00041 19.2 0.0 0.00073 18.4 0.0 1.4 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Aminotran_5 PF00266.19 gi|134045048|ref|YP_001096534.1| - 0.0008 18.5 0.1 0.0019 17.2 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V SHMT PF00464.19 gi|134045048|ref|YP_001096534.1| - 0.00092 17.9 0.1 0.0021 16.8 0.1 1.5 1 1 0 1 1 1 1 Serine hydroxymethyltransferase AAA_26 PF13500.6 gi|134045049|ref|YP_001096535.1| - 2.4e-41 141.7 0.0 2.9e-41 141.5 0.0 1.0 1 0 0 1 1 1 1 AAA domain Trans_reg_C PF00486.28 gi|134045050|ref|YP_001096536.1| - 0.018 15.1 0.1 0.032 14.3 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal HMG_box_2 PF09011.10 gi|134045050|ref|YP_001096536.1| - 0.11 13.1 0.1 0.2 12.3 0.1 1.5 1 1 0 1 1 1 0 HMG-box domain Gate PF07670.14 gi|134045051|ref|YP_001096537.1| - 1.4e-08 35.0 17.3 9.9e-05 22.6 3.8 2.5 2 0 0 2 2 2 2 Nucleoside recognition RseC_MucC PF04246.12 gi|134045051|ref|YP_001096537.1| - 2.6 8.0 7.1 0.29 11.1 0.2 2.8 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC TatD_DNase PF01026.21 gi|134045052|ref|YP_001096538.1| - 4.7e-60 203.1 0.0 5.3e-60 202.9 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.14 gi|134045052|ref|YP_001096538.1| - 0.11 12.2 0.0 5.6 6.7 0.0 2.6 2 1 0 3 3 3 0 Amidohydrolase DUF749 PF05370.11 gi|134045053|ref|YP_001096539.1| - 1e-34 118.5 0.8 1.2e-34 118.3 0.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF749) DUF2096 PF09869.9 gi|134045054|ref|YP_001096540.1| - 6.7e-53 179.2 4.9 7.5e-53 179.1 4.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2096) AGOG PF09171.10 gi|134045054|ref|YP_001096540.1| - 0.017 14.4 0.1 0.23 10.7 0.0 2.0 2 0 0 2 2 2 0 N-glycosylase/DNA lyase Flu_NS2 PF00601.19 gi|134045054|ref|YP_001096540.1| - 0.072 13.4 1.3 0.18 12.1 0.1 2.2 2 1 0 2 2 2 0 Influenza non-structural protein (NS2) PDZ_1 PF12812.7 gi|134045054|ref|YP_001096540.1| - 0.094 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 PDZ-like domain MtrH PF02007.18 gi|134045055|ref|YP_001096541.1| - 1.9e-144 480.3 3.0 2.2e-144 480.1 3.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit FBPase PF00316.20 gi|134045055|ref|YP_001096541.1| - 0.086 12.3 0.1 0.57 9.6 0.0 2.1 2 0 0 2 2 2 0 Fructose-1-6-bisphosphatase, N-terminal domain MtrG PF04210.13 gi|134045056|ref|YP_001096542.1| - 6.2e-28 96.4 0.2 7e-28 96.3 0.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G MtrF PF09472.10 gi|134045056|ref|YP_001096542.1| - 0.0028 17.0 0.0 0.0048 16.2 0.0 1.4 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF2207 PF09972.9 gi|134045056|ref|YP_001096542.1| - 0.029 13.1 0.0 0.03 13.1 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) MtrA PF04208.14 gi|134045057|ref|YP_001096543.1| - 9.5e-81 269.5 2.8 1.3e-80 269.1 2.8 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|134045057|ref|YP_001096543.1| - 2.9e-20 71.4 0.1 4.8e-20 70.7 0.1 1.4 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.14 gi|134045058|ref|YP_001096544.1| - 8.3e-81 269.7 2.8 1.1e-80 269.3 2.8 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrB PF05440.12 gi|134045059|ref|YP_001096545.1| - 2.8e-35 120.6 0.1 3.4e-35 120.3 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrC PF04211.13 gi|134045060|ref|YP_001096546.1| - 3e-99 331.5 24.9 3.3e-99 331.3 24.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C DUF1218 PF06749.12 gi|134045060|ref|YP_001096546.1| - 0.043 14.3 4.0 0.043 14.3 4.0 3.7 3 2 0 3 3 3 0 Protein of unknown function (DUF1218) CPP1-like PF11833.8 gi|134045060|ref|YP_001096546.1| - 8.5 6.0 14.5 0.48 10.0 0.2 2.8 2 1 1 3 3 3 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like MtrD PF04207.12 gi|134045061|ref|YP_001096547.1| - 1.5e-94 315.8 27.6 1.9e-94 315.4 27.6 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrE PF04206.12 gi|134045062|ref|YP_001096548.1| - 6.9e-128 425.6 11.3 7.9e-128 425.5 11.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E DUF2085 PF09858.9 gi|134045062|ref|YP_001096548.1| - 0.38 11.2 0.1 0.38 11.2 0.1 2.4 3 0 0 3 3 3 0 Predicted membrane protein (DUF2085) MCR_alpha_N PF02745.15 gi|134045063|ref|YP_001096549.1| - 5.2e-146 485.1 0.0 6.9e-146 484.7 0.0 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|134045063|ref|YP_001096549.1| - 4e-67 224.5 4.5 7.5e-67 223.6 4.5 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_gamma PF02240.16 gi|134045064|ref|YP_001096550.1| - 5.8e-128 425.3 0.8 6.5e-128 425.1 0.8 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.12 gi|134045065|ref|YP_001096551.1| - 9e-10 38.1 0.3 1.7e-09 37.1 0.2 1.4 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.14 gi|134045066|ref|YP_001096552.1| - 4.4e-55 185.5 0.0 5e-55 185.3 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.18 gi|134045067|ref|YP_001096553.1| - 1.1e-136 454.3 8.8 1.5e-136 453.9 8.8 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|134045067|ref|YP_001096553.1| - 7.4e-81 270.1 3.0 1.3e-80 269.3 3.0 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain CAF1-p150_N PF15557.6 gi|134045067|ref|YP_001096553.1| - 0.0035 17.3 0.1 0.78 9.6 0.0 2.2 2 0 0 2 2 2 2 CAF1 complex subunit p150, region binding to PCNA Radical_SAM PF04055.21 gi|134045068|ref|YP_001096554.1| - 1.8e-14 54.5 10.6 9.8e-13 48.8 8.4 3.0 2 1 0 2 2 2 1 Radical SAM superfamily Flavoprotein PF02441.19 gi|134045070|ref|YP_001096556.1| - 1.7e-27 96.1 0.0 2.1e-27 95.8 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein SRP54 PF00448.22 gi|134045071|ref|YP_001096557.1| - 5.8e-72 241.4 1.0 1.2e-71 240.4 1.0 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|134045071|ref|YP_001096557.1| - 8.6e-29 100.1 7.4 1e-28 99.9 0.9 3.4 4 0 0 4 4 3 1 Signal peptide binding domain SRP54_N PF02881.19 gi|134045071|ref|YP_001096557.1| - 7.5e-17 61.3 3.8 7.5e-17 61.3 3.8 2.9 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.6 gi|134045071|ref|YP_001096557.1| - 2.1e-06 28.1 0.0 5.5e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|134045071|ref|YP_001096557.1| - 4.2e-06 26.5 1.8 2.8e-05 23.8 1.8 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|134045071|ref|YP_001096557.1| - 4.4e-06 26.8 0.0 1.3e-05 25.3 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.6 gi|134045071|ref|YP_001096557.1| - 7.7e-05 23.1 0.0 0.00017 22.0 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|134045071|ref|YP_001096557.1| - 0.00049 19.9 0.1 0.0012 18.6 0.1 1.7 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|134045071|ref|YP_001096557.1| - 0.00071 18.9 0.1 0.0021 17.4 0.1 1.8 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 gi|134045071|ref|YP_001096557.1| - 0.0019 18.0 0.0 0.0042 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|134045071|ref|YP_001096557.1| - 0.002 18.5 0.4 0.002 18.5 0.4 2.9 2 1 0 2 2 2 1 AAA domain 6PF2K PF01591.18 gi|134045071|ref|YP_001096557.1| - 0.0022 17.3 1.1 0.0039 16.5 0.0 2.0 3 0 0 3 3 3 1 6-phosphofructo-2-kinase ParA PF10609.9 gi|134045071|ref|YP_001096557.1| - 0.0046 16.4 0.1 0.0088 15.5 0.1 1.5 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase G-alpha PF00503.20 gi|134045071|ref|YP_001096557.1| - 0.0053 16.0 0.1 0.0099 15.1 0.0 1.6 1 1 0 1 1 1 1 G-protein alpha subunit LpxK PF02606.14 gi|134045071|ref|YP_001096557.1| - 0.0062 15.7 0.2 0.058 12.5 0.0 2.0 1 1 1 2 2 2 1 Tetraacyldisaccharide-1-P 4'-kinase AAA_33 PF13671.6 gi|134045071|ref|YP_001096557.1| - 0.0073 16.5 0.0 0.019 15.1 0.0 1.8 2 0 0 2 2 1 1 AAA domain CLP1_P PF16575.5 gi|134045071|ref|YP_001096557.1| - 0.0081 16.0 0.1 1.2 8.8 0.0 2.6 1 1 1 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|134045071|ref|YP_001096557.1| - 0.0096 15.8 0.0 0.025 14.5 0.0 1.7 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_25 PF13481.6 gi|134045071|ref|YP_001096557.1| - 0.01 15.4 1.0 0.4 10.2 0.2 2.3 1 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|134045071|ref|YP_001096557.1| - 0.015 15.7 0.1 0.076 13.4 0.1 2.1 1 1 0 1 1 1 0 RNA helicase AAA PF00004.29 gi|134045071|ref|YP_001096557.1| - 0.017 15.5 2.6 0.058 13.8 0.6 3.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|134045071|ref|YP_001096557.1| - 0.018 15.2 0.5 5.2 7.2 0.0 2.7 2 0 0 2 2 2 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|134045071|ref|YP_001096557.1| - 0.018 14.1 0.2 0.73 8.8 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein MobB PF03205.14 gi|134045071|ref|YP_001096557.1| - 0.019 14.9 0.1 0.056 13.3 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B SWI2_SNF2 PF18766.1 gi|134045071|ref|YP_001096557.1| - 0.02 14.5 0.7 0.04 13.6 0.1 1.8 1 1 1 2 2 2 0 SWI2/SNF2 ATPase AAA_8 PF12780.7 gi|134045071|ref|YP_001096557.1| - 0.02 14.2 0.5 0.067 12.5 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 NACHT PF05729.12 gi|134045071|ref|YP_001096557.1| - 0.023 14.6 0.1 0.13 12.1 0.0 2.2 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.6 gi|134045071|ref|YP_001096557.1| - 0.024 15.2 0.2 0.098 13.2 0.2 2.2 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|134045071|ref|YP_001096557.1| - 0.029 14.3 0.4 0.49 10.3 0.0 2.5 2 0 0 2 2 2 0 NTPase DUF2075 PF09848.9 gi|134045071|ref|YP_001096557.1| - 0.031 13.5 0.3 0.059 12.6 0.3 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Thymidylate_kin PF02223.17 gi|134045071|ref|YP_001096557.1| - 0.046 13.4 0.1 0.18 11.5 0.1 2.0 1 0 0 1 1 1 0 Thymidylate kinase ABC_tran PF00005.27 gi|134045071|ref|YP_001096557.1| - 0.051 14.1 0.1 0.13 12.7 0.1 1.8 1 0 0 1 1 1 0 ABC transporter PFOR_II PF17147.4 gi|134045071|ref|YP_001096557.1| - 0.051 13.9 1.5 5.6 7.3 0.0 3.7 4 0 0 4 4 3 0 Pyruvate:ferredoxin oxidoreductase core domain II KTI12 PF08433.10 gi|134045071|ref|YP_001096557.1| - 0.052 13.0 0.1 0.13 11.7 0.1 1.8 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_19 PF13245.6 gi|134045071|ref|YP_001096557.1| - 0.076 13.4 0.1 0.17 12.2 0.1 1.6 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|134045071|ref|YP_001096557.1| - 0.076 12.0 2.5 0.24 10.3 0.0 2.6 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|134045071|ref|YP_001096557.1| - 0.079 13.0 0.6 0.37 10.8 0.6 2.3 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|134045071|ref|YP_001096557.1| - 0.08 13.2 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain HTH_1 PF00126.27 gi|134045071|ref|YP_001096557.1| - 0.087 12.8 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family ResIII PF04851.15 gi|134045071|ref|YP_001096557.1| - 0.13 12.3 2.3 0.36 10.8 1.4 2.3 2 1 0 2 2 1 0 Type III restriction enzyme, res subunit SRPRB PF09439.10 gi|134045071|ref|YP_001096557.1| - 0.16 11.4 5.1 4 6.8 0.1 2.7 3 0 0 3 3 2 0 Signal recognition particle receptor beta subunit MMR_HSR1 PF01926.23 gi|134045071|ref|YP_001096557.1| - 0.18 11.9 5.3 0.067 13.3 1.4 2.3 2 1 0 2 2 1 0 50S ribosome-binding GTPase RHH_3 PF12651.7 gi|134045071|ref|YP_001096557.1| - 0.34 10.9 2.4 1.8 8.6 0.0 3.2 3 0 0 3 3 2 0 Ribbon-helix-helix domain T3SS_basalb_I PF17001.5 gi|134045071|ref|YP_001096557.1| - 7.9 7.1 8.7 16 6.2 0.1 3.7 4 0 0 4 4 3 0 Type III secretion basal body protein I, YscI, HrpB, PscI F420_oxidored PF03807.17 gi|134045072|ref|YP_001096558.1| - 6.7e-20 71.5 2.1 7.6e-20 71.3 0.4 2.0 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.17 gi|134045072|ref|YP_001096558.1| - 0.0015 17.6 0.0 0.0024 16.9 0.0 1.4 1 0 0 1 1 1 1 Prephenate dehydrogenase ApbA PF02558.16 gi|134045072|ref|YP_001096558.1| - 0.0048 16.5 0.1 0.012 15.3 0.1 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.24 gi|134045072|ref|YP_001096558.1| - 0.028 14.9 0.3 0.071 13.6 0.1 1.7 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.24 gi|134045073|ref|YP_001096559.1| - 1.1e-28 100.1 0.0 1.4e-28 99.8 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|134045073|ref|YP_001096559.1| - 0.00012 21.0 0.3 0.00023 20.1 0.1 1.5 2 0 0 2 2 2 1 D-mannonate dehydratase (UxuA) AP_endonuc_2_N PF07582.12 gi|134045073|ref|YP_001096559.1| - 0.07 12.9 0.0 0.2 11.4 0.0 1.8 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus FBA_2 PF07735.17 gi|134045073|ref|YP_001096559.1| - 0.089 12.9 1.9 0.19 11.9 0.2 2.3 3 0 0 3 3 3 0 F-box associated Fumerase_C PF05683.12 gi|134045074|ref|YP_001096560.1| - 2.8e-41 141.1 0.0 3.1e-41 141.0 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Ribosomal_S19 PF00203.21 gi|134045075|ref|YP_001096561.1| - 1.6e-24 85.6 0.5 2.8e-24 84.8 0.5 1.4 1 0 0 1 1 1 1 Ribosomal protein S19 OAD_beta PF03977.13 gi|134045075|ref|YP_001096561.1| - 0.17 10.8 0.1 0.22 10.5 0.1 1.0 1 0 0 1 1 1 0 Na+-transporting oxaloacetate decarboxylase beta subunit Ribosomal_L2_C PF03947.18 gi|134045076|ref|YP_001096562.1| - 4e-45 153.1 1.5 6.4e-45 152.4 1.5 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|134045076|ref|YP_001096562.1| - 3.9e-21 74.8 0.0 1.3e-20 73.2 0.0 1.9 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain PRC PF05239.16 gi|134045076|ref|YP_001096562.1| - 0.057 13.5 0.1 0.17 12.0 0.1 1.8 1 0 0 1 1 1 0 PRC-barrel domain Ribosomal_L23 PF00276.20 gi|134045077|ref|YP_001096563.1| - 6.5e-17 61.7 4.5 4.4e-16 59.0 4.5 1.8 1 1 0 1 1 1 1 Ribosomal protein L23 NKWYS PF10364.9 gi|134045077|ref|YP_001096563.1| - 0.09 12.9 0.2 0.1 12.7 0.2 1.0 1 0 0 1 1 1 0 Putative capsular polysaccharide synthesis protein Ribosomal_L4 PF00573.22 gi|134045078|ref|YP_001096564.1| - 2.8e-40 138.1 0.9 3.1e-40 137.9 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family OST_P2 PF18235.1 gi|134045078|ref|YP_001096564.1| - 0.072 13.0 0.1 0.37 10.7 0.0 2.1 3 0 0 3 3 3 0 Oligosaccharyltransferase Peripheral 2 domain Ribosomal_L3 PF00297.22 gi|134045079|ref|YP_001096565.1| - 1e-91 307.7 5.9 1.9e-91 306.8 5.9 1.4 1 1 0 1 1 1 1 Ribosomal protein L3 Translin PF01997.16 gi|134045080|ref|YP_001096566.1| - 2.8e-08 34.0 6.8 2e-07 31.2 6.8 2.1 1 1 0 1 1 1 1 Translin family Carb_kinase PF01256.17 gi|134045081|ref|YP_001096567.1| - 1.7e-08 34.3 0.0 2.1e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase DUF3343 PF11823.8 gi|134045082|ref|YP_001096568.1| - 3.5e-11 42.4 0.0 5.7e-11 41.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3343) Sulf_transp PF04143.14 gi|134045083|ref|YP_001096569.1| - 8.1e-10 38.8 13.6 1.3e-09 38.1 13.6 1.4 1 0 0 1 1 1 1 Sulphur transport Bacteriocin_IIc PF10439.9 gi|134045083|ref|YP_001096569.1| - 0.021 14.9 0.6 0.021 14.9 0.6 3.3 1 1 1 2 2 2 0 Bacteriocin class II with double-glycine leader peptide Sulf_transp PF04143.14 gi|134045084|ref|YP_001096570.1| - 0.00086 19.0 10.6 0.0019 17.9 10.7 1.5 1 1 0 1 1 1 1 Sulphur transport S1FA PF04689.13 gi|134045084|ref|YP_001096570.1| - 7.5 6.8 7.0 7.9 6.7 1.3 2.4 2 0 0 2 2 2 0 DNA binding protein S1FA tRNA_anti-codon PF01336.25 gi|134045085|ref|YP_001096571.1| - 4.3e-10 39.4 0.2 2.1e-05 24.4 0.1 2.2 1 1 1 2 2 2 2 OB-fold nucleic acid binding domain DUF4131 PF13567.6 gi|134045085|ref|YP_001096571.1| - 0.00051 19.7 0.0 0.00076 19.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) DUF1460 PF07313.12 gi|134045085|ref|YP_001096571.1| - 0.0019 17.6 0.3 0.026 13.9 0.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1460) DUF3006 PF11213.8 gi|134045085|ref|YP_001096571.1| - 0.026 14.7 0.4 1 9.7 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3006) RMI2 PF16100.5 gi|134045085|ref|YP_001096571.1| - 0.16 11.7 0.1 10 6.0 0.1 2.2 1 1 1 2 2 2 0 RecQ-mediated genome instability protein 2 TctA PF01970.16 gi|134045086|ref|YP_001096572.1| - 1e-52 179.3 39.1 1.3e-52 179.0 39.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family AAA_18 PF13238.6 gi|134045087|ref|YP_001096573.1| - 7.1e-10 39.5 0.2 1e-09 39.0 0.2 1.2 1 0 0 1 1 1 1 AAA domain Peptidase_C13 PF01650.18 gi|134045088|ref|YP_001096574.1| - 0.049 13.1 0.3 0.61 9.6 0.1 2.0 1 1 1 2 2 2 0 Peptidase C13 family Fes1 PF08609.10 gi|134045088|ref|YP_001096574.1| - 0.13 13.2 0.0 0.2 12.5 0.0 1.3 1 0 0 1 1 1 0 Nucleotide exchange factor Fes1 PGK PF00162.19 gi|134045089|ref|YP_001096575.1| - 1.4e-111 373.1 1.5 1.6e-111 372.9 1.5 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase AIRS PF00586.24 gi|134045090|ref|YP_001096576.1| - 1.2e-16 61.1 0.5 6.8e-16 58.7 0.3 2.1 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|134045090|ref|YP_001096576.1| - 6.8e-11 42.5 0.0 1.1e-10 41.8 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Methyltransf_11 PF08241.12 gi|134045092|ref|YP_001096578.1| - 1.3e-15 57.8 0.1 5.3e-15 55.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|134045092|ref|YP_001096578.1| - 1.4e-10 41.8 0.1 4.8e-10 40.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|134045092|ref|YP_001096578.1| - 2.7e-09 37.1 0.0 5.3e-09 36.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|134045092|ref|YP_001096578.1| - 8.2e-09 35.4 6.0 8.1e-07 29.0 2.0 3.0 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_12 PF08242.12 gi|134045092|ref|YP_001096578.1| - 6.1e-08 33.3 0.1 3.4e-07 30.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|134045092|ref|YP_001096578.1| - 4.4e-06 26.7 0.1 5.4e-06 26.4 0.1 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.18 gi|134045092|ref|YP_001096578.1| - 9e-06 25.2 0.8 1.9e-05 24.2 0.8 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|134045092|ref|YP_001096578.1| - 2.6e-05 23.5 0.2 6e-05 22.3 0.1 1.5 1 1 1 2 2 2 1 DREV methyltransferase PDT PF00800.18 gi|134045093|ref|YP_001096579.1| - 1.5e-54 184.6 0.2 1.8e-54 184.3 0.2 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|134045093|ref|YP_001096579.1| - 3.1e-07 30.0 0.0 6.8e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 ACT domain Aminotran_1_2 PF00155.21 gi|134045094|ref|YP_001096580.1| - 2.4e-39 135.5 0.0 3e-39 135.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Ribonucleas_3_3 PF14622.6 gi|134045095|ref|YP_001096581.1| - 2.8e-36 124.5 0.1 4.7e-36 123.8 0.1 1.3 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 gi|134045095|ref|YP_001096581.1| - 3.9e-22 78.9 0.1 7.6e-22 77.9 0.1 1.5 1 0 0 1 1 1 1 Ribonuclease III domain dsrm PF00035.26 gi|134045095|ref|YP_001096581.1| - 5.5e-14 52.6 1.2 1.2e-13 51.6 1.2 1.6 1 0 0 1 1 1 1 Double-stranded RNA binding motif Staufen_C PF16482.5 gi|134045095|ref|YP_001096581.1| - 0.069 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Staufen C-terminal domain Ribosomal_S5 PF00333.20 gi|134045095|ref|YP_001096581.1| - 0.13 12.3 0.7 0.23 11.5 0.7 1.4 1 0 0 1 1 1 0 Ribosomal protein S5, N-terminal domain PmbA_TldD PF01523.16 gi|134045096|ref|YP_001096582.1| - 1.5e-54 185.8 3.5 1.8e-54 185.5 3.5 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase SecD_SecF PF02355.16 gi|134045097|ref|YP_001096583.1| - 6.8e-38 130.0 13.7 6.8e-38 130.0 13.7 1.4 2 0 0 2 2 2 1 Protein export membrane protein Patched PF02460.18 gi|134045097|ref|YP_001096583.1| - 6e-06 24.7 11.5 7.7e-06 24.3 11.5 1.1 1 0 0 1 1 1 1 Patched family SecD_SecF PF02355.16 gi|134045098|ref|YP_001096584.1| - 1.5e-16 60.4 10.1 3.2e-16 59.3 10.1 1.5 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|134045098|ref|YP_001096584.1| - 2.4e-06 26.8 0.3 5e-06 25.8 0.3 1.5 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.18 gi|134045098|ref|YP_001096584.1| - 0.019 13.1 11.7 0.027 12.6 11.7 1.1 1 0 0 1 1 1 0 Patched family MMPL PF03176.15 gi|134045098|ref|YP_001096584.1| - 4.9 6.0 17.8 0.095 11.6 10.8 1.6 2 0 0 2 2 2 0 MMPL family LPG_synthase_TM PF03706.13 gi|134045099|ref|YP_001096585.1| - 3.8e-52 177.7 24.8 4.4e-52 177.5 24.8 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF2120 PF09893.9 gi|134045100|ref|YP_001096586.1| - 6.4e-43 146.1 0.8 7.3e-43 145.9 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2120) cobW PF02492.19 gi|134045101|ref|YP_001096587.1| - 3.5e-26 91.8 1.8 4.7e-26 91.4 1.8 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|134045101|ref|YP_001096587.1| - 1.4e-07 30.8 1.4 9.7e-07 28.0 1.4 1.9 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|134045101|ref|YP_001096587.1| - 0.00012 22.0 0.4 0.14 12.0 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase MobB PF03205.14 gi|134045101|ref|YP_001096587.1| - 0.00053 19.9 0.1 0.0013 18.6 0.1 1.9 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|134045101|ref|YP_001096587.1| - 0.0098 15.8 0.1 0.025 14.5 0.0 1.7 2 0 0 2 2 2 1 NTPase AAA PF00004.29 gi|134045101|ref|YP_001096587.1| - 0.01 16.3 0.1 0.028 14.9 0.0 1.9 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|134045101|ref|YP_001096587.1| - 0.025 14.2 0.2 0.076 12.6 0.2 2.0 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|134045101|ref|YP_001096587.1| - 0.058 13.4 0.0 0.084 12.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|134045101|ref|YP_001096587.1| - 0.073 13.4 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|134045101|ref|YP_001096587.1| - 0.088 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region BPD_transp_1 PF00528.22 gi|134045102|ref|YP_001096588.1| - 1.8e-20 73.5 11.3 1.8e-20 73.5 11.3 2.0 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|134045103|ref|YP_001096589.1| - 5e-33 114.5 0.0 8.1e-33 113.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|134045103|ref|YP_001096589.1| - 8.5e-07 28.6 0.0 0.027 13.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|134045103|ref|YP_001096589.1| - 3.5e-06 26.6 0.0 1.1e-05 25.1 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|134045103|ref|YP_001096589.1| - 2.4e-05 24.3 0.9 0.14 12.0 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|134045103|ref|YP_001096589.1| - 0.00075 20.1 0.5 0.0018 18.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|134045103|ref|YP_001096589.1| - 0.0035 17.3 0.0 0.0093 15.9 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|134045103|ref|YP_001096589.1| - 0.0071 16.1 4.1 0.016 15.0 4.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|134045103|ref|YP_001096589.1| - 0.0073 16.7 0.0 0.012 16.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|134045103|ref|YP_001096589.1| - 0.013 14.9 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MukB PF04310.12 gi|134045103|ref|YP_001096589.1| - 0.078 12.8 0.0 0.22 11.3 0.0 1.6 2 0 0 2 2 2 0 MukB N-terminal SbcCD_C PF13558.6 gi|134045103|ref|YP_001096589.1| - 0.16 12.2 0.0 3 8.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Peptidase_M50 PF02163.22 gi|134045104|ref|YP_001096590.1| - 4e-07 29.6 12.5 0.00045 19.6 0.2 3.1 1 1 1 2 2 2 2 Peptidase family M50 SMC_ScpA PF02616.14 gi|134045105|ref|YP_001096591.1| - 6.4e-12 45.9 1.7 6.4e-11 42.6 1.7 2.2 1 1 0 1 1 1 1 Segregation and condensation protein ScpA DUF5105 PF17118.5 gi|134045105|ref|YP_001096591.1| - 0.039 13.7 4.3 0.14 11.9 2.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5105) GP3_package PF16677.5 gi|134045105|ref|YP_001096591.1| - 0.07 13.3 0.1 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 DNA-packaging protein gp3 RRN3 PF05327.11 gi|134045105|ref|YP_001096591.1| - 0.078 11.5 0.5 0.081 11.5 0.5 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Cpn60_TCP1 PF00118.24 gi|134045106|ref|YP_001096592.1| - 4.7e-181 602.7 29.7 5.3e-181 602.5 29.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF915 PF06028.11 gi|134045106|ref|YP_001096592.1| - 0.025 13.9 0.5 0.63 9.3 0.1 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) PDH PF02153.17 gi|134045107|ref|YP_001096593.1| - 1.1e-79 267.1 0.1 1.6e-79 266.6 0.1 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|134045107|ref|YP_001096593.1| - 8.9e-10 39.0 0.3 3.5e-09 37.1 0.1 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|134045107|ref|YP_001096593.1| - 3.2e-08 33.9 0.1 3e-07 30.8 0.0 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|134045107|ref|YP_001096593.1| - 3.2e-05 23.5 0.2 0.00024 20.7 0.1 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain FDX-ACB PF03147.14 gi|134045107|ref|YP_001096593.1| - 0.00063 20.1 0.1 0.0033 17.8 0.1 2.2 1 0 0 1 1 1 1 Ferredoxin-fold anticodon binding domain ABC_transp_aux PF09822.9 gi|134045107|ref|YP_001096593.1| - 0.00072 19.1 2.6 0.65 9.4 0.2 3.0 2 1 0 3 3 3 2 ABC-type uncharacterized transport system TipAS PF07739.13 gi|134045107|ref|YP_001096593.1| - 0.016 15.8 0.2 6.2 7.4 0.0 2.4 2 0 0 2 2 2 0 TipAS antibiotic-recognition domain NAD_Gly3P_dh_N PF01210.23 gi|134045107|ref|YP_001096593.1| - 0.021 14.8 0.1 0.064 13.2 0.1 1.8 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short PF00106.25 gi|134045107|ref|YP_001096593.1| - 0.027 13.9 0.2 0.11 11.9 0.0 2.1 3 0 0 3 3 3 0 short chain dehydrogenase TIR_2 PF13676.6 gi|134045107|ref|YP_001096593.1| - 0.049 14.2 0.0 3.2 8.4 0.0 2.7 2 0 0 2 2 2 0 TIR domain SpoU_sub_bind PF08032.12 gi|134045107|ref|YP_001096593.1| - 0.18 12.1 0.9 1.2 9.5 0.0 2.9 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding PTPS_related PF10131.9 gi|134045107|ref|YP_001096593.1| - 0.19 10.0 0.4 2.2 6.5 0.1 2.0 2 0 0 2 2 2 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein Ldh_1_C PF02866.18 gi|134045107|ref|YP_001096593.1| - 0.7 9.8 4.4 0.58 10.1 0.3 2.4 3 0 0 3 3 3 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain AlaDh_PNT_C PF01262.21 gi|134045108|ref|YP_001096594.1| - 5.2e-86 287.4 4.8 6.9e-86 287.0 4.8 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.15 gi|134045108|ref|YP_001096594.1| - 1.8e-48 164.3 0.4 3.2e-48 163.5 0.1 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, N-terminal domain 2-Hacid_dh_C PF02826.19 gi|134045108|ref|YP_001096594.1| - 2.9e-07 30.0 0.3 1.1e-06 28.1 0.2 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|134045108|ref|YP_001096594.1| - 3.2e-06 27.6 0.4 7.5e-06 26.4 0.4 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|134045108|ref|YP_001096594.1| - 6.5e-06 25.6 0.1 1.1e-05 24.8 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase THF_DHG_CYH_C PF02882.19 gi|134045108|ref|YP_001096594.1| - 4.6e-05 22.8 4.3 0.00085 18.7 0.6 2.5 1 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Shikimate_DH PF01488.20 gi|134045108|ref|YP_001096594.1| - 0.00086 19.4 0.1 0.0019 18.2 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|134045108|ref|YP_001096594.1| - 0.0024 17.8 0.4 0.0044 16.9 0.4 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|134045108|ref|YP_001096594.1| - 0.0031 17.5 0.4 0.0092 16.0 0.4 1.8 1 1 0 1 1 1 1 Zinc-binding dehydrogenase GIDA PF01134.22 gi|134045108|ref|YP_001096594.1| - 0.0042 16.2 0.3 0.0063 15.7 0.3 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|134045108|ref|YP_001096594.1| - 0.0055 17.1 0.3 0.013 16.0 0.3 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|134045108|ref|YP_001096594.1| - 0.01 16.0 1.4 0.017 15.3 0.5 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_oxidored PF12831.7 gi|134045108|ref|YP_001096594.1| - 0.058 12.7 3.2 0.08 12.3 3.2 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|134045108|ref|YP_001096594.1| - 0.058 13.6 0.3 0.45 10.8 0.5 2.4 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 gi|134045108|ref|YP_001096594.1| - 0.92 9.0 4.6 4.9 6.7 4.6 2.1 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ala_racemase_N PF01168.20 gi|134045109|ref|YP_001096595.1| - 2.7e-75 252.8 0.0 3.7e-75 252.3 0.0 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Ala_racemase_C PF00842.21 gi|134045109|ref|YP_001096595.1| - 1.3e-46 157.4 0.1 2.2e-46 156.7 0.1 1.4 1 0 0 1 1 1 1 Alanine racemase, C-terminal domain Na_Ala_symp PF01235.17 gi|134045110|ref|YP_001096596.1| - 1.6e-149 498.5 30.6 2e-149 498.2 30.6 1.0 1 0 0 1 1 1 1 Sodium:alanine symporter family Amidase PF01425.21 gi|134045111|ref|YP_001096597.1| - 6.4e-123 411.0 0.0 7.4e-123 410.8 0.0 1.0 1 0 0 1 1 1 1 Amidase SBP_bac_3 PF00497.20 gi|134045113|ref|YP_001096599.1| - 1.1e-44 152.5 0.3 1.3e-44 152.3 0.3 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|134045113|ref|YP_001096599.1| - 0.0077 16.4 0.2 0.038 14.2 0.1 2.4 1 1 1 2 2 2 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|134045113|ref|YP_001096599.1| - 0.018 15.0 0.1 0.066 13.1 0.1 2.0 1 1 1 2 2 2 0 NMT1/THI5 like DUF555 PF04475.12 gi|134045114|ref|YP_001096600.1| - 2.2e-44 149.9 0.2 2.5e-44 149.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zf-ribbon_3 PF13248.6 gi|134045114|ref|YP_001096600.1| - 0.062 12.7 0.1 0.098 12.1 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DUF357 PF04010.13 gi|134045115|ref|YP_001096601.1| - 1.3e-26 92.5 0.1 1.5e-26 92.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) POR PF01558.18 gi|134045116|ref|YP_001096602.1| - 2.3e-38 132.0 0.1 3e-38 131.7 0.1 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|134045117|ref|YP_001096603.1| - 2.2e-13 49.4 18.1 2.4e-07 30.3 3.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134045117|ref|YP_001096603.1| - 7e-10 38.6 16.4 3.5e-05 23.7 2.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134045117|ref|YP_001096603.1| - 1.4e-09 38.0 12.9 1.8e-09 37.6 12.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134045117|ref|YP_001096603.1| - 4.4e-08 32.7 9.1 0.00086 19.3 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134045117|ref|YP_001096603.1| - 9.2e-08 32.6 24.8 3.8e-06 27.4 13.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045117|ref|YP_001096603.1| - 1.2e-07 31.7 25.3 1.8e-05 24.8 15.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045117|ref|YP_001096603.1| - 2.4e-07 30.8 27.8 9.4e-06 25.7 14.6 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045117|ref|YP_001096603.1| - 1.4e-06 29.1 14.5 0.0038 18.1 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|134045117|ref|YP_001096603.1| - 0.0019 18.7 9.7 0.23 12.0 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134045117|ref|YP_001096603.1| - 0.014 15.8 18.3 0.064 13.8 6.9 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|134045117|ref|YP_001096603.1| - 0.037 14.6 2.5 0.037 14.6 2.5 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|134045117|ref|YP_001096603.1| - 0.12 12.9 15.0 1.2 9.6 4.1 2.2 1 1 2 3 3 2 0 4Fe-4S dicluster domain CH_2 PF06294.11 gi|134045117|ref|YP_001096603.1| - 0.14 12.3 0.0 0.16 12.1 0.0 1.3 1 1 0 1 1 1 0 CH-like domain in sperm protein Fer4_15 PF13459.6 gi|134045117|ref|YP_001096603.1| - 0.37 11.6 16.6 1.3 9.8 4.0 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|134045117|ref|YP_001096603.1| - 0.94 10.4 12.6 10 7.0 2.9 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|134045118|ref|YP_001096604.1| - 1.2e-78 264.0 1.4 1.6e-78 263.6 1.4 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|134045118|ref|YP_001096604.1| - 6.9e-30 103.4 0.1 1.5e-29 102.3 0.1 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|134045118|ref|YP_001096604.1| - 1.8e-06 27.8 0.0 4.7e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain PEP-utilisers_N PF05524.13 gi|134045118|ref|YP_001096604.1| - 0.047 13.9 0.1 0.19 11.9 0.0 2.1 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal GTP_EFTU_D4 PF14578.6 gi|134045118|ref|YP_001096604.1| - 0.1 12.5 0.3 0.31 11.0 0.1 2.0 2 0 0 2 2 2 0 Elongation factor Tu domain 4 TPP_enzyme_C PF02775.21 gi|134045119|ref|YP_001096605.1| - 6.3e-28 97.5 0.8 6.3e-28 97.5 0.8 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|134045119|ref|YP_001096605.1| - 0.011 14.9 0.1 0.014 14.6 0.1 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_11 PF13247.6 gi|134045120|ref|YP_001096606.1| - 4.7e-14 52.3 14.4 4.7e-14 52.3 14.4 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134045120|ref|YP_001096606.1| - 6.3e-12 45.0 37.1 4.6e-07 29.6 1.9 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|134045120|ref|YP_001096606.1| - 9.9e-12 44.2 37.6 2.2e-10 39.9 2.5 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134045120|ref|YP_001096606.1| - 6.8e-10 39.0 25.8 6.9e-06 26.1 9.3 3.3 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045120|ref|YP_001096606.1| - 8.2e-10 39.1 33.0 0.00016 22.2 1.6 3.7 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134045120|ref|YP_001096606.1| - 4.4e-09 35.9 33.4 5.1e-06 26.3 0.8 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134045120|ref|YP_001096606.1| - 2.5e-08 33.9 29.7 0.0007 19.7 10.6 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045120|ref|YP_001096606.1| - 3.2e-08 33.6 33.6 8.5e-05 22.6 10.6 3.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|134045120|ref|YP_001096606.1| - 4.2e-07 30.5 44.6 0.048 14.6 5.9 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|134045120|ref|YP_001096606.1| - 5.8e-06 27.1 30.5 0.013 16.4 1.1 4.4 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|134045120|ref|YP_001096606.1| - 0.0003 21.1 35.3 0.00062 20.1 2.3 4.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|134045120|ref|YP_001096606.1| - 0.0071 16.9 1.3 0.0071 16.9 1.3 4.0 4 0 0 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|134045120|ref|YP_001096606.1| - 0.012 16.3 23.9 0.6 10.9 9.7 4.3 3 1 1 4 4 4 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|134045120|ref|YP_001096606.1| - 0.036 14.6 2.7 0.036 14.6 2.7 4.4 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|134045121|ref|YP_001096607.1| - 2.3e-18 65.2 39.0 6.3e-09 35.3 5.4 6.0 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134045121|ref|YP_001096607.1| - 1.9e-14 53.0 45.0 2e-06 27.6 4.2 4.8 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134045121|ref|YP_001096607.1| - 3.3e-14 53.2 68.7 5.5e-07 30.1 13.3 3.8 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045121|ref|YP_001096607.1| - 3.5e-12 47.1 33.4 0.0028 18.6 2.2 4.3 2 1 2 4 4 4 4 4Fe-4S double cluster binding domain Fer4_11 PF13247.6 gi|134045121|ref|YP_001096607.1| - 3.8e-12 46.2 17.7 3.8e-12 46.2 17.7 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045121|ref|YP_001096607.1| - 9.7e-12 44.9 68.2 5.5e-06 26.4 11.7 3.3 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134045121|ref|YP_001096607.1| - 3.7e-11 42.4 34.6 0.00011 22.1 2.5 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134045121|ref|YP_001096607.1| - 1.4e-10 41.2 38.5 1.7e-07 31.2 14.6 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|134045121|ref|YP_001096607.1| - 1.9e-10 40.9 42.1 0.0031 18.3 6.7 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|134045121|ref|YP_001096607.1| - 3e-10 40.1 48.9 7.1e-06 26.0 13.1 3.9 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045121|ref|YP_001096607.1| - 1.5e-06 28.6 31.1 0.0036 17.8 2.5 4.4 2 1 3 5 5 5 5 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134045121|ref|YP_001096607.1| - 1.8e-05 24.9 36.8 0.0005 20.4 1.9 4.9 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|134045121|ref|YP_001096607.1| - 0.00016 22.0 30.3 0.055 13.9 1.9 4.3 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|134045121|ref|YP_001096607.1| - 0.0032 17.6 33.5 0.17 12.1 11.1 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Chromo_shadow PF01393.19 gi|134045121|ref|YP_001096607.1| - 0.13 12.4 1.2 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 Chromo shadow domain Fer4_20 PF14691.6 gi|134045121|ref|YP_001096607.1| - 0.18 11.6 31.9 0.44 10.3 3.7 4.1 2 1 2 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.6 gi|134045121|ref|YP_001096607.1| - 6.2 7.6 29.0 7.5 7.4 13.1 4.8 3 1 0 3 3 3 0 4Fe-4S single cluster domain Metallophos_2 PF12850.7 gi|134045122|ref|YP_001096608.1| - 2.5e-30 105.9 0.0 2.9e-30 105.6 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|134045122|ref|YP_001096608.1| - 4.5e-06 27.3 0.4 0.005 17.4 0.1 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Tubulin PF00091.25 gi|134045123|ref|YP_001096609.1| - 8.6e-41 140.3 0.6 1.4e-40 139.6 0.6 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|134045123|ref|YP_001096609.1| - 2.7e-33 114.1 1.4 9.6e-33 112.4 0.5 2.5 2 0 0 2 2 2 1 FtsZ family, C-terminal domain ThiF PF00899.21 gi|134045123|ref|YP_001096609.1| - 0.0051 16.2 0.1 0.013 14.8 0.0 1.7 2 0 0 2 2 2 1 ThiF family 2-Hacid_dh_C PF02826.19 gi|134045123|ref|YP_001096609.1| - 0.024 14.0 1.1 2 7.8 0.1 2.9 1 1 3 4 4 4 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|134045123|ref|YP_001096609.1| - 0.038 14.3 2.8 0.59 10.4 0.2 3.2 2 1 1 3 3 3 0 TrkA-N domain Tubulin_2 PF13809.6 gi|134045123|ref|YP_001096609.1| - 1.8 7.7 5.8 4.1 6.5 1.3 2.2 1 1 1 2 2 2 0 Tubulin like HTH_3 PF01381.22 gi|134045124|ref|YP_001096610.1| - 0.00099 19.1 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix PrpR_N PF06506.11 gi|134045124|ref|YP_001096610.1| - 0.0057 16.3 1.2 0.011 15.3 0.8 1.7 1 1 1 2 2 2 1 Propionate catabolism activator HTH_26 PF13443.6 gi|134045124|ref|YP_001096610.1| - 0.11 13.0 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF1188 PF06690.11 gi|134045125|ref|YP_001096611.1| - 1.2e-95 319.8 4.4 1.3e-95 319.6 4.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) SMODS PF18144.1 gi|134045125|ref|YP_001096611.1| - 0.062 13.5 0.6 1.9 8.7 0.0 2.2 2 0 0 2 2 2 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DUF3236 PF11576.8 gi|134045126|ref|YP_001096612.1| - 2.3e-66 222.2 2.8 2.5e-66 222.1 2.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3236) tRNA-synt_2d PF01409.20 gi|134045127|ref|YP_001096613.1| - 4.6e-91 304.6 0.0 6.4e-91 304.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|134045127|ref|YP_001096613.1| - 2.4e-12 46.8 0.0 8.3e-10 38.5 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|134045127|ref|YP_001096613.1| - 4.3e-07 29.3 0.6 8.3e-05 21.8 0.1 3.3 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) PheRS_DBD3 PF18553.1 gi|134045127|ref|YP_001096613.1| - 0.0075 16.5 0.1 0.031 14.6 0.1 2.2 1 0 0 1 1 1 1 PheRS DNA binding domain 3 ox_reductase_C PF08635.10 gi|134045127|ref|YP_001096613.1| - 0.061 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative oxidoreductase C terminal domain Radical_SAM_C PF16199.5 gi|134045128|ref|YP_001096614.1| - 7.3e-23 80.4 0.5 1.3e-22 79.6 0.5 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|134045128|ref|YP_001096614.1| - 1.2e-12 48.5 0.4 2.8e-12 47.3 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily DUF366 PF04017.12 gi|134045129|ref|YP_001096615.1| - 1.1e-68 230.3 2.9 1.3e-68 230.1 2.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) PCI PF01399.27 gi|134045129|ref|YP_001096615.1| - 0.08 13.5 0.3 0.16 12.5 0.1 1.6 2 0 0 2 2 2 0 PCI domain S_layer_C PF05124.12 gi|134045130|ref|YP_001096616.1| - 1.3e-26 94.0 11.0 1.3e-26 94.0 11.0 2.9 2 2 0 2 2 2 1 S-layer like family, C-terminal region BcsB PF03170.13 gi|134045130|ref|YP_001096616.1| - 0.0023 16.4 0.0 0.01 14.2 0.0 1.8 1 1 1 2 2 2 1 Bacterial cellulose synthase subunit Pribosyltran PF00156.27 gi|134045131|ref|YP_001096617.1| - 6.6e-14 51.7 2.1 9.2e-14 51.3 2.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|134045131|ref|YP_001096617.1| - 0.00013 21.5 0.1 0.00039 19.9 0.1 1.7 1 1 1 2 2 2 1 Uracil phosphoribosyltransferase PTRF_SDPR PF15237.6 gi|134045131|ref|YP_001096617.1| - 0.003 17.2 0.1 0.005 16.5 0.1 1.4 1 0 0 1 1 1 1 PTRF/SDPR family DUF460 PF04312.13 gi|134045131|ref|YP_001096617.1| - 0.017 14.8 1.8 0.022 14.5 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF460) Amidohydro_1 PF01979.20 gi|134045132|ref|YP_001096618.1| - 6.7e-78 262.4 0.4 7.9e-78 262.2 0.4 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|134045132|ref|YP_001096618.1| - 1.4e-17 64.4 0.0 2.3e-13 50.4 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|134045132|ref|YP_001096618.1| - 3.7e-05 23.2 0.0 7.2e-05 22.3 0.0 1.6 2 0 0 2 2 2 1 TatD related DNase KTI12 PF08433.10 gi|134045133|ref|YP_001096619.1| - 2.8e-54 184.4 3.6 8.2e-53 179.6 3.6 2.0 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|134045133|ref|YP_001096619.1| - 3.2e-15 56.6 0.0 4.8e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|134045133|ref|YP_001096619.1| - 5.9e-10 39.8 0.3 1.5e-09 38.5 0.0 1.8 2 1 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|134045133|ref|YP_001096619.1| - 6.3e-06 26.2 0.0 1.6e-05 24.8 0.0 1.6 1 1 0 1 1 1 1 Adenylylsulphate kinase CPT PF07931.12 gi|134045133|ref|YP_001096619.1| - 3.3e-05 23.8 0.0 0.18 11.6 0.1 2.2 1 1 1 2 2 2 2 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 gi|134045133|ref|YP_001096619.1| - 6e-05 22.4 0.0 0.0001 21.7 0.0 1.5 1 1 0 1 1 1 1 Zeta toxin SKI PF01202.22 gi|134045133|ref|YP_001096619.1| - 0.0005 20.2 0.0 0.00082 19.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate kinase dNK PF01712.19 gi|134045133|ref|YP_001096619.1| - 0.00081 19.3 1.6 0.054 13.4 0.2 2.8 2 1 1 3 3 3 1 Deoxynucleoside kinase MMR_HSR1 PF01926.23 gi|134045133|ref|YP_001096619.1| - 0.0035 17.4 2.2 0.023 14.8 2.1 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|134045133|ref|YP_001096619.1| - 0.0064 16.5 0.3 0.0064 16.5 0.3 1.8 2 1 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|134045133|ref|YP_001096619.1| - 0.013 15.1 0.2 1.6 8.4 0.0 2.5 2 0 0 2 2 2 0 Thymidylate kinase ArsA_ATPase PF02374.15 gi|134045133|ref|YP_001096619.1| - 0.028 13.6 0.1 0.028 13.6 0.1 2.1 2 2 0 2 2 2 0 Anion-transporting ATPase AAA_24 PF13479.6 gi|134045133|ref|YP_001096619.1| - 0.028 14.1 0.1 0.067 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|134045133|ref|YP_001096619.1| - 0.033 14.1 0.7 0.071 13.0 0.1 1.8 2 1 1 3 3 3 0 NTPase DnaB_C PF03796.15 gi|134045133|ref|YP_001096619.1| - 0.038 13.3 0.4 0.11 11.8 0.0 1.9 2 1 1 3 3 3 0 DnaB-like helicase C terminal domain AAA_17 PF13207.6 gi|134045133|ref|YP_001096619.1| - 0.07 13.5 0.0 0.49 10.8 0.0 2.4 1 1 0 1 1 1 0 AAA domain KIP1 PF07765.12 gi|134045133|ref|YP_001096619.1| - 0.13 12.3 0.7 3.6 7.8 0.0 2.5 2 0 0 2 2 2 0 KIP1-like protein NAD_kinase PF01513.21 gi|134045134|ref|YP_001096620.1| - 7.2e-65 219.1 0.5 2.8e-64 217.1 0.5 1.9 1 1 0 1 1 1 1 ATP-NAD kinase Inositol_P PF00459.25 gi|134045134|ref|YP_001096620.1| - 3.5e-26 92.3 0.1 3.1e-25 89.2 0.1 2.0 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|134045134|ref|YP_001096620.1| - 0.0003 20.3 0.0 0.00083 18.9 0.0 1.7 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain DAGK_cat PF00781.24 gi|134045134|ref|YP_001096620.1| - 0.00075 19.1 0.0 0.0021 17.7 0.0 1.7 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain PmbA_TldD PF01523.16 gi|134045135|ref|YP_001096621.1| - 9.8e-64 215.9 1.6 9.8e-64 215.9 1.6 1.3 2 0 0 2 2 2 1 Putative modulator of DNA gyrase CDC24_OB1 PF17246.2 gi|134045135|ref|YP_001096621.1| - 0.014 15.5 0.6 0.34 11.0 0.1 2.2 2 0 0 2 2 2 0 Cell division control protein 24, OB domain 1 G5 PF07501.12 gi|134045135|ref|YP_001096621.1| - 0.019 15.4 1.9 0.22 12.0 0.3 2.4 2 0 0 2 2 2 0 G5 domain DUF5358 PF17311.2 gi|134045135|ref|YP_001096621.1| - 0.06 13.4 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5358) Aldedh PF00171.22 gi|134045136|ref|YP_001096622.1| - 1.4e-149 498.6 0.3 1.7e-149 498.3 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family MS_channel PF00924.18 gi|134045137|ref|YP_001096623.1| - 3.5e-44 150.8 0.1 3.5e-44 150.8 0.1 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|134045137|ref|YP_001096623.1| - 0.00051 20.0 2.1 0.00051 20.0 2.1 2.8 1 1 1 2 2 2 1 Conserved TM helix PTS_EIIC PF02378.18 gi|134045137|ref|YP_001096623.1| - 0.051 12.6 8.2 0.076 12.0 8.2 1.2 1 0 0 1 1 1 0 Phosphotransferase system, EIIC HemY_N PF07219.13 gi|134045137|ref|YP_001096623.1| - 5.8 7.2 5.0 1.3 9.3 0.3 2.1 3 0 0 3 3 3 0 HemY protein N-terminus MoCF_biosynth PF00994.24 gi|134045138|ref|YP_001096624.1| - 4.2e-24 84.8 0.1 5e-24 84.6 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain ABC_tran PF00005.27 gi|134045139|ref|YP_001096625.1| - 4e-31 108.3 0.0 8e-31 107.4 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|134045139|ref|YP_001096625.1| - 2.1e-14 54.1 0.6 5.1e-11 42.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|134045139|ref|YP_001096625.1| - 2.9e-08 33.4 0.0 1.1e-07 31.6 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|134045139|ref|YP_001096625.1| - 0.0028 17.4 0.3 1 9.0 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|134045139|ref|YP_001096625.1| - 0.0042 17.6 0.4 0.0067 17.0 0.4 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|134045139|ref|YP_001096625.1| - 0.011 15.5 0.1 0.021 14.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|134045139|ref|YP_001096625.1| - 0.013 14.2 0.0 0.24 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|134045139|ref|YP_001096625.1| - 0.022 14.4 0.1 0.038 13.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|134045139|ref|YP_001096625.1| - 0.056 13.7 0.0 0.45 10.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|134045139|ref|YP_001096625.1| - 0.22 11.8 0.0 1.3 9.3 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Cthe_2159 PF14262.6 gi|134045140|ref|YP_001096626.1| - 3.8e-36 124.8 26.5 5.2e-36 124.3 26.5 1.2 1 0 0 1 1 1 1 Carbohydrate-binding domain-containing protein Cthe_2159 AIDA PF16168.5 gi|134045140|ref|YP_001096626.1| - 0.031 14.4 1.7 0.031 14.4 1.7 4.6 3 1 1 5 5 5 0 Adhesin of bacterial autotransporter system, probable stalk Cadherin_3 PF16184.5 gi|134045140|ref|YP_001096626.1| - 0.093 12.7 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Cadherin-like CbiQ PF02361.16 gi|134045141|ref|YP_001096627.1| - 8.8e-49 166.1 8.8 1.2e-48 165.7 8.8 1.1 1 0 0 1 1 1 1 Cobalt transport protein CbiN PF02553.15 gi|134045142|ref|YP_001096628.1| - 2e-30 104.5 0.2 2.6e-30 104.2 0.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiM PF01891.16 gi|134045143|ref|YP_001096629.1| - 2.5e-52 177.7 18.0 2.8e-52 177.6 18.0 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region Aconitase PF00330.20 gi|134045144|ref|YP_001096630.1| - 1.6e-90 304.4 7.6 2.5e-88 297.1 7.6 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DisA_N PF02457.16 gi|134045145|ref|YP_001096631.1| - 1.5e-21 76.2 0.3 3.4e-21 75.0 0.1 1.7 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding PK_C PF02887.16 gi|134045145|ref|YP_001096631.1| - 4.5e-09 36.5 1.6 6.9e-08 32.7 0.1 3.0 3 1 0 3 3 3 1 Pyruvate kinase, alpha/beta domain GATase_3 PF07685.14 gi|134045146|ref|YP_001096632.1| - 9.9e-35 119.9 0.1 1.4e-34 119.4 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|134045146|ref|YP_001096632.1| - 1.1e-18 67.6 0.1 2e-18 66.7 0.1 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|134045146|ref|YP_001096632.1| - 6.5e-18 65.3 0.9 1e-11 45.0 0.0 2.5 2 1 0 3 3 3 2 AAA domain SNO PF01174.19 gi|134045146|ref|YP_001096632.1| - 0.023 14.5 0.0 0.059 13.2 0.0 1.7 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DUF1611 PF07755.11 gi|134045146|ref|YP_001096632.1| - 0.16 11.3 0.1 0.4 9.9 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain Herpes_LMP1 PF05297.11 gi|134045147|ref|YP_001096633.1| - 8 5.5 7.0 16 4.6 6.3 1.5 1 1 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) E1_FCCH PF16190.5 gi|134045149|ref|YP_001096635.1| - 0.011 15.9 0.9 0.075 13.2 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-activating enzyme E1 FCCH domain tRNA-synt_1 PF00133.22 gi|134045150|ref|YP_001096636.1| - 9e-173 575.8 8.7 1.4e-172 575.1 8.7 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|134045150|ref|YP_001096636.1| - 4.9e-26 91.5 3.4 1.3e-25 90.1 3.4 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|134045150|ref|YP_001096636.1| - 6.2e-24 84.5 4.9 3.5e-09 35.9 0.1 4.0 4 1 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|134045150|ref|YP_001096636.1| - 2.4e-09 37.0 0.2 2.1e-07 30.6 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|134045150|ref|YP_001096636.1| - 7.8e-07 28.3 0.3 0.00018 20.6 0.0 3.2 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|134045150|ref|YP_001096636.1| - 2.7e-06 27.0 0.2 7.9e-06 25.5 0.2 1.8 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DUF1036 PF06282.11 gi|134045150|ref|YP_001096636.1| - 0.16 12.5 0.1 0.41 11.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1036) DUF356 PF04009.12 gi|134045151|ref|YP_001096637.1| - 2.1e-40 137.2 1.7 2.5e-40 137.0 1.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) PIN_5 PF08745.11 gi|134045152|ref|YP_001096638.1| - 2.3e-88 295.0 0.3 2.6e-88 294.8 0.3 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease Collectrin PF16959.5 gi|134045152|ref|YP_001096638.1| - 0.017 14.9 0.0 0.029 14.2 0.0 1.4 1 1 0 1 1 1 0 Renal amino acid transporter SRI PF08236.11 gi|134045152|ref|YP_001096638.1| - 0.033 14.4 0.0 4.6 7.5 0.0 2.5 3 0 0 3 3 3 0 SRI (Set2 Rpb1 interacting) domain Rep_2 PF01719.17 gi|134045152|ref|YP_001096638.1| - 0.035 13.9 0.2 0.067 13.0 0.1 1.6 1 1 1 2 2 2 0 Plasmid replication protein HIGH_NTase1_ass PF16581.5 gi|134045153|ref|YP_001096639.1| - 2e-81 272.9 17.3 2e-81 272.9 17.3 1.4 2 0 0 2 2 2 1 Cytidyltransferase-related C-terminal region HIGH_NTase1 PF05636.11 gi|134045153|ref|YP_001096639.1| - 9.1e-21 74.5 1.5 1.9e-13 50.4 0.0 2.2 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase Erf4 PF10256.9 gi|134045153|ref|YP_001096639.1| - 0.0019 18.3 1.0 2.2 8.4 0.0 3.0 2 1 0 2 2 2 2 Golgin subfamily A member 7/ERF4 family Citrate_ly_lig PF08218.11 gi|134045153|ref|YP_001096639.1| - 0.0029 17.3 0.3 0.14 11.8 0.0 3.3 2 1 1 3 3 3 1 Citrate lyase ligase C-terminal domain ATP-sulfurylase PF01747.17 gi|134045153|ref|YP_001096639.1| - 0.01 15.3 0.0 0.047 13.2 0.0 2.0 2 0 0 2 2 2 0 ATP-sulfurylase CTP_transf_like PF01467.26 gi|134045153|ref|YP_001096639.1| - 0.13 12.5 0.1 1.5 9.0 0.1 2.7 1 1 0 1 1 1 0 Cytidylyltransferase-like Prefoldin PF02996.17 gi|134045154|ref|YP_001096640.1| - 2.3e-18 66.2 8.9 3.3e-18 65.7 8.9 1.3 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|134045154|ref|YP_001096640.1| - 2.6e-05 24.1 15.2 0.001 19.0 5.6 2.2 1 1 1 2 2 2 2 Prefoldin subunit LRRFIP PF09738.9 gi|134045154|ref|YP_001096640.1| - 0.0016 18.0 3.2 0.0016 18.0 3.2 2.0 2 0 0 2 2 2 1 LRRFIP family DHR10 PF18595.1 gi|134045154|ref|YP_001096640.1| - 0.002 18.1 12.9 0.0031 17.6 5.0 2.2 2 0 0 2 2 2 1 Designed helical repeat protein 10 domain Tektin PF03148.14 gi|134045154|ref|YP_001096640.1| - 0.0021 16.9 3.9 0.0021 16.9 3.9 2.0 2 0 0 2 2 2 1 Tektin family IFT57 PF10498.9 gi|134045154|ref|YP_001096640.1| - 0.0099 14.9 2.0 0.0099 14.9 2.0 2.0 2 0 0 2 2 2 1 Intra-flagellar transport protein 57 Filament PF00038.21 gi|134045154|ref|YP_001096640.1| - 0.025 14.2 8.5 0.12 12.0 1.9 2.0 2 0 0 2 2 2 0 Intermediate filament protein DUF641 PF04859.12 gi|134045154|ref|YP_001096640.1| - 0.03 14.6 10.3 0.44 10.9 1.5 2.1 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) Glyco_hydro_38N PF01074.22 gi|134045154|ref|YP_001096640.1| - 0.035 13.5 0.0 0.059 12.7 0.0 1.5 1 1 0 1 1 1 0 Glycosyl hydrolases family 38 N-terminal domain DUF155 PF02582.14 gi|134045154|ref|YP_001096640.1| - 0.036 14.2 2.5 0.64 10.1 0.5 2.1 2 0 0 2 2 2 0 Uncharacterised ACR, YagE family COG1723 Syntaxin-6_N PF09177.11 gi|134045154|ref|YP_001096640.1| - 0.044 14.3 3.9 1.9 9.1 1.3 2.2 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Atg14 PF10186.9 gi|134045154|ref|YP_001096640.1| - 0.058 12.5 5.3 0.038 13.1 0.9 1.9 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1759 PF03564.15 gi|134045154|ref|YP_001096640.1| - 0.086 12.8 2.1 7 6.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1759) ATG16 PF08614.11 gi|134045154|ref|YP_001096640.1| - 0.11 12.8 8.9 0.082 13.1 2.4 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Golgin_A5 PF09787.9 gi|134045154|ref|YP_001096640.1| - 0.13 11.7 11.9 0.3 10.5 11.9 1.6 1 1 0 1 1 1 0 Golgin subfamily A member 5 DUF1664 PF07889.12 gi|134045154|ref|YP_001096640.1| - 0.16 12.0 8.5 2.4 8.2 1.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) UPF0242 PF06785.11 gi|134045154|ref|YP_001096640.1| - 0.2 11.8 15.9 2.1 8.4 15.9 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF724 PF05266.14 gi|134045154|ref|YP_001096640.1| - 0.22 11.3 8.3 0.47 10.3 3.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Mt_ATP-synt_D PF05873.12 gi|134045154|ref|YP_001096640.1| - 0.25 11.2 4.8 2.5 8.0 1.9 2.2 2 0 0 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) FlxA PF14282.6 gi|134045154|ref|YP_001096640.1| - 0.27 11.3 13.5 0.18 11.8 5.6 2.3 2 0 0 2 2 2 0 FlxA-like protein BRE1 PF08647.11 gi|134045154|ref|YP_001096640.1| - 0.34 11.0 12.9 2.5 8.2 3.7 2.3 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase COG2 PF06148.11 gi|134045154|ref|YP_001096640.1| - 0.46 10.6 7.7 0.62 10.1 2.2 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Med4 PF10018.9 gi|134045154|ref|YP_001096640.1| - 0.6 9.8 9.5 0.79 9.4 2.2 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 BLOC1_2 PF10046.9 gi|134045154|ref|YP_001096640.1| - 0.8 10.1 13.4 2.4 8.5 1.9 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 APG6_N PF17675.1 gi|134045154|ref|YP_001096640.1| - 0.88 10.1 9.4 0.5 10.9 1.9 2.1 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF948 PF06103.11 gi|134045154|ref|YP_001096640.1| - 0.98 9.7 6.5 1.6 9.0 2.5 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) BST2 PF16716.5 gi|134045154|ref|YP_001096640.1| - 0.98 10.0 12.8 0.54 10.9 5.0 2.3 2 0 0 2 2 2 0 Bone marrow stromal antigen 2 AAA_13 PF13166.6 gi|134045154|ref|YP_001096640.1| - 0.99 8.0 10.8 1.7 7.2 5.1 1.9 1 1 1 2 2 2 0 AAA domain TMPIT PF07851.13 gi|134045154|ref|YP_001096640.1| - 1 8.5 7.2 1.5 8.0 2.3 2.0 2 0 0 2 2 2 0 TMPIT-like protein DUF16 PF01519.16 gi|134045154|ref|YP_001096640.1| - 1.1 9.8 10.3 5.1 7.6 3.8 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF16 PRKG1_interact PF15898.5 gi|134045154|ref|YP_001096640.1| - 1.2 10.0 9.5 0.82 10.6 2.9 2.2 2 0 0 2 2 2 0 cGMP-dependent protein kinase interacting domain WEMBL PF05701.11 gi|134045154|ref|YP_001096640.1| - 1.4 7.6 14.4 0.16 10.6 6.5 2.0 1 1 0 2 2 2 0 Weak chloroplast movement under blue light XhlA PF10779.9 gi|134045154|ref|YP_001096640.1| - 1.4 9.2 11.3 1.8 8.9 0.8 2.7 2 1 1 3 3 3 0 Haemolysin XhlA CLZ PF16526.5 gi|134045154|ref|YP_001096640.1| - 1.5 9.2 11.3 1.8 8.9 3.5 2.3 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF4349 PF14257.6 gi|134045154|ref|YP_001096640.1| - 1.7 8.0 8.3 0.36 10.2 4.8 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) LPP PF04728.13 gi|134045154|ref|YP_001096640.1| - 2 8.8 7.9 7.3 7.1 0.7 3.0 2 1 1 3 3 3 0 Lipoprotein leucine-zipper DUF3450 PF11932.8 gi|134045154|ref|YP_001096640.1| - 2.2 7.5 12.6 3 7.1 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) OmpH PF03938.14 gi|134045154|ref|YP_001096640.1| - 2.3 8.6 14.1 0.61 10.4 4.9 2.2 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Fib_alpha PF08702.10 gi|134045154|ref|YP_001096640.1| - 2.8 8.1 10.0 0.86 9.8 1.9 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family APG17 PF04108.12 gi|134045154|ref|YP_001096640.1| - 3.6 6.6 11.2 0.58 9.2 3.5 2.0 1 1 0 2 2 2 0 Autophagy protein Apg17 ZapB PF06005.12 gi|134045154|ref|YP_001096640.1| - 4.1 7.9 14.2 6 7.4 1.5 2.3 2 0 0 2 2 2 0 Cell division protein ZapB HIP1_clath_bdg PF16515.5 gi|134045154|ref|YP_001096640.1| - 4.2 8.1 14.5 1.8 9.2 4.8 2.2 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 KxDL PF10241.9 gi|134045154|ref|YP_001096640.1| - 4.7 7.6 9.8 0.97 9.8 3.3 2.4 2 1 0 2 2 2 0 Uncharacterized conserved protein DivIC PF04977.15 gi|134045154|ref|YP_001096640.1| - 4.8 7.0 13.3 3.5 7.4 0.8 2.5 2 1 0 2 2 2 0 Septum formation initiator THOC7 PF05615.13 gi|134045154|ref|YP_001096640.1| - 4.8 7.5 11.9 1 9.6 5.3 2.1 2 0 0 2 2 2 0 Tho complex subunit 7 YabA PF06156.13 gi|134045154|ref|YP_001096640.1| - 7.9 7.2 10.3 10 6.8 0.7 2.2 2 0 0 2 2 2 0 Initiation control protein YabA Cauli_DNA-bind PF03310.13 gi|134045154|ref|YP_001096640.1| - 8.2 6.5 7.9 1.6 8.8 2.3 2.0 1 1 0 2 2 2 0 Caulimovirus DNA-binding protein ACCA PF03255.14 gi|134045154|ref|YP_001096640.1| - 9.5 6.1 8.5 2.4 8.0 2.7 2.0 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MNHE PF01899.16 gi|134045155|ref|YP_001096641.1| - 1.8e-17 63.5 0.0 1.8e-17 63.5 0.0 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit SDH_alpha PF03313.15 gi|134045156|ref|YP_001096642.1| - 1e-24 87.7 1.2 1.1e-24 87.5 0.6 1.4 1 1 1 2 2 2 1 Serine dehydratase alpha chain HTH_11 PF08279.12 gi|134045157|ref|YP_001096643.1| - 3.6e-10 39.6 0.1 5e-10 39.2 0.1 1.2 1 0 0 1 1 1 1 HTH domain HrcA_DNA-bdg PF03444.15 gi|134045157|ref|YP_001096643.1| - 3.1e-05 23.5 0.0 4.6e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|134045158|ref|YP_001096644.1| - 7.9e-17 61.5 2.7 2.1e-07 31.3 0.5 2.4 2 0 0 2 2 2 2 CBS domain sCache_3_2 PF17203.4 gi|134045158|ref|YP_001096644.1| - 0.09 12.9 0.1 2.6 8.2 0.1 2.2 2 0 0 2 2 2 0 Single cache domain 3 Fer4 PF00037.27 gi|134045159|ref|YP_001096645.1| - 1.1e-40 135.9 58.3 7.2e-08 31.9 1.6 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134045159|ref|YP_001096645.1| - 1.5e-28 97.6 56.7 1.8e-05 24.6 2.1 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134045159|ref|YP_001096645.1| - 3e-27 94.9 48.3 6e-10 39.6 10.7 4.5 3 2 2 5 5 5 5 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134045159|ref|YP_001096645.1| - 1.6e-26 92.2 54.2 1.5e-09 37.8 11.1 4.9 4 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045159|ref|YP_001096645.1| - 6.5e-26 90.3 79.4 7e-08 32.5 10.4 4.2 2 1 3 5 5 5 5 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045159|ref|YP_001096645.1| - 1.6e-25 89.8 44.8 9.7e-05 23.2 1.4 6.2 6 0 0 6 6 6 6 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|134045159|ref|YP_001096645.1| - 4.3e-24 84.4 53.9 6.9e-07 29.3 13.3 5.2 3 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134045159|ref|YP_001096645.1| - 9.3e-22 75.7 49.6 0.00027 20.9 2.6 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_8 PF13183.6 gi|134045159|ref|YP_001096645.1| - 1.1e-15 57.8 44.7 2.7e-05 24.5 6.6 5.3 3 1 2 5 5 5 5 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045159|ref|YP_001096645.1| - 1.3e-13 51.2 43.9 3.6e-06 27.4 5.2 5.2 2 1 2 5 5 5 5 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134045159|ref|YP_001096645.1| - 1.1e-11 44.2 60.5 0.019 15.5 4.3 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_13 PF13370.6 gi|134045159|ref|YP_001096645.1| - 6.5e-10 39.4 50.8 0.012 16.1 2.7 6.6 6 0 0 6 6 6 6 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|134045159|ref|YP_001096645.1| - 1.8e-09 37.8 67.7 0.067 14.2 5.1 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_18 PF13746.6 gi|134045159|ref|YP_001096645.1| - 1e-06 28.9 47.9 0.065 13.4 1.7 4.7 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|134045159|ref|YP_001096645.1| - 0.00028 21.7 47.2 0.36 11.7 1.6 6.1 2 1 4 7 7 6 4 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134045159|ref|YP_001096645.1| - 2.8 8.7 51.4 2 9.2 0.6 7.5 5 3 0 5 5 5 0 4Fe-4S single cluster domain Fer4 PF00037.27 gi|134045160|ref|YP_001096646.1| - 3.3e-28 96.3 33.5 2.2e-07 30.4 2.5 4.1 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134045160|ref|YP_001096646.1| - 3.8e-23 80.6 34.2 5.9e-08 32.5 2.4 4.1 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134045160|ref|YP_001096646.1| - 4.2e-22 78.5 22.5 1.1e-09 38.7 9.3 3.1 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045160|ref|YP_001096646.1| - 3.3e-18 65.6 60.7 9e-08 32.2 10.2 3.0 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045160|ref|YP_001096646.1| - 3e-17 62.5 31.7 1.9e-07 31.1 11.0 3.4 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045160|ref|YP_001096646.1| - 1.1e-15 58.3 30.1 1.6e-06 29.0 11.1 4.0 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|134045160|ref|YP_001096646.1| - 1.9e-15 55.9 31.6 0.00015 21.7 2.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134045160|ref|YP_001096646.1| - 6.8e-15 55.0 32.7 3e-09 36.9 13.6 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045160|ref|YP_001096646.1| - 4.8e-10 39.8 26.1 0.0029 18.1 10.6 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134045160|ref|YP_001096646.1| - 1e-08 35.5 31.6 0.00067 20.1 11.1 3.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|134045160|ref|YP_001096646.1| - 4.5e-07 30.4 44.7 0.018 15.9 4.2 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_22 PF17179.4 gi|134045160|ref|YP_001096646.1| - 5.1e-06 27.2 22.0 0.1 13.4 0.4 4.1 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134045160|ref|YP_001096646.1| - 2.6e-05 24.4 33.7 0.036 14.6 3.1 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_13 PF13370.6 gi|134045160|ref|YP_001096646.1| - 0.00016 22.2 30.9 0.42 11.2 3.6 4.3 4 0 0 4 4 4 4 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|134045160|ref|YP_001096646.1| - 0.00045 20.4 30.2 0.39 10.9 2.0 4.0 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134045160|ref|YP_001096646.1| - 0.44 11.3 31.3 1.3 9.9 2.3 5.1 4 3 0 4 4 4 0 4Fe-4S single cluster domain Fer4 PF00037.27 gi|134045161|ref|YP_001096647.1| - 4.7e-52 171.8 83.7 8.5e-09 34.9 4.2 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134045161|ref|YP_001096647.1| - 1.5e-38 129.3 82.6 4.6e-06 26.5 2.6 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134045161|ref|YP_001096647.1| - 9.5e-35 118.5 131.1 4e-09 36.5 8.5 6.0 1 1 8 9 9 9 9 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045161|ref|YP_001096647.1| - 1e-34 118.8 69.0 2.4e-10 40.9 11.7 5.4 2 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134045161|ref|YP_001096647.1| - 2.1e-34 115.5 79.4 5.5e-05 23.0 2.3 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_10 PF13237.6 gi|134045161|ref|YP_001096647.1| - 6.1e-34 115.9 66.2 2.6e-08 33.8 12.7 6.8 4 3 2 6 6 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045161|ref|YP_001096647.1| - 1.3e-32 112.5 56.3 2.3e-07 31.7 4.5 7.3 6 1 1 7 7 7 6 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|134045161|ref|YP_001096647.1| - 6e-31 106.4 71.7 9.7e-11 41.6 10.3 5.4 3 2 2 5 5 5 5 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134045161|ref|YP_001096647.1| - 3e-19 67.9 79.0 0.01 16.2 2.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_8 PF13183.6 gi|134045161|ref|YP_001096647.1| - 2.1e-18 66.5 68.7 0.00046 20.6 0.1 7.7 4 2 4 8 8 7 7 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045161|ref|YP_001096647.1| - 1.8e-14 54.0 73.0 0.00033 21.1 8.2 7.9 3 3 6 9 9 9 6 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|134045161|ref|YP_001096647.1| - 4.7e-12 46.0 96.6 0.026 15.4 5.3 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_22 PF17179.4 gi|134045161|ref|YP_001096647.1| - 6.1e-09 36.6 61.9 0.25 12.2 0.1 8.2 5 3 4 9 9 9 4 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|134045161|ref|YP_001096647.1| - 7.4e-09 36.0 72.3 0.18 12.4 1.1 8.6 8 0 0 8 8 8 8 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|134045161|ref|YP_001096647.1| - 4.7e-06 26.8 66.7 0.00011 22.4 8.3 6.1 2 2 3 5 5 5 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134045161|ref|YP_001096647.1| - 0.00012 22.8 64.4 0.29 11.9 0.2 9.5 7 3 3 10 10 10 5 4Fe-4S single cluster domain YABBY PF04690.13 gi|134045161|ref|YP_001096647.1| - 0.051 14.1 0.6 0.051 14.1 0.6 3.6 3 1 0 3 3 3 0 YABBY protein Complex1_49kDa PF00346.19 gi|134045162|ref|YP_001096648.1| - 5.4e-43 147.0 0.3 1.4e-33 116.1 0.1 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|134045162|ref|YP_001096648.1| - 5.5e-13 48.6 2.3 5.5e-13 48.6 2.3 3.4 3 1 0 3 3 3 2 Nickel-dependent hydrogenase Oxidored_q6 PF01058.22 gi|134045163|ref|YP_001096649.1| - 5.7e-28 97.4 0.5 7.1e-28 97.0 0.5 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF1959 PF09218.10 gi|134045164|ref|YP_001096650.1| - 1.7e-49 166.7 0.4 2.1e-49 166.5 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1959) DUF2104 PF09877.9 gi|134045165|ref|YP_001096651.1| - 2.4e-30 104.7 4.8 3e-30 104.4 4.8 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2104) DUF751 PF05421.11 gi|134045165|ref|YP_001096651.1| - 0.014 16.1 0.2 0.014 16.1 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF751) YrhK PF14145.6 gi|134045165|ref|YP_001096651.1| - 0.025 14.4 1.6 0.051 13.4 0.6 1.9 1 1 1 2 2 2 0 YrhK-like protein DUF973 PF06157.11 gi|134045165|ref|YP_001096651.1| - 0.075 12.1 4.3 0.17 10.9 4.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF973) LptF_LptG PF03739.14 gi|134045165|ref|YP_001096651.1| - 0.81 8.5 5.6 0.83 8.4 2.6 1.9 1 1 1 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG SVM_signal PF12113.8 gi|134045166|ref|YP_001096652.1| - 0.083 12.8 0.4 0.083 12.8 0.4 3.4 3 1 0 3 3 3 0 SVM protein signal sequence DUF3981 PF13139.6 gi|134045166|ref|YP_001096652.1| - 1 9.8 6.6 1.3 9.4 6.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3981) Gram_pos_anchor PF00746.21 gi|134045166|ref|YP_001096652.1| - 1.5 8.8 0.0 1.5 8.8 0.0 2.7 3 0 0 3 3 3 0 LPXTG cell wall anchor motif PRA1 PF03208.19 gi|134045166|ref|YP_001096652.1| - 2.8 7.6 9.3 3.5 7.3 9.3 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF4131 PF13567.6 gi|134045166|ref|YP_001096652.1| - 7.7 6.1 6.3 14 5.2 6.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) NADHdh PF00146.21 gi|134045167|ref|YP_001096653.1| - 2.5e-26 92.7 22.4 3.1e-26 92.4 22.4 1.1 1 0 0 1 1 1 1 NADH dehydrogenase DUF4199 PF13858.6 gi|134045168|ref|YP_001096654.1| - 0.0051 17.2 1.3 0.0058 17.0 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4199) Tetraspanin PF00335.20 gi|134045168|ref|YP_001096654.1| - 0.011 15.5 0.2 0.013 15.2 0.2 1.0 1 0 0 1 1 1 0 Tetraspanin family Rab5ip PF07019.12 gi|134045168|ref|YP_001096654.1| - 0.017 15.7 0.5 0.019 15.6 0.5 1.1 1 0 0 1 1 1 0 Rab5-interacting protein (Rab5ip) DUF4064 PF13273.6 gi|134045168|ref|YP_001096654.1| - 0.025 14.8 2.9 0.15 12.3 3.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) Phage_holin_5_2 PF16079.5 gi|134045168|ref|YP_001096654.1| - 0.031 14.6 0.2 0.036 14.4 0.2 1.1 1 0 0 1 1 1 0 Phage holin family Hol44, in holin superfamily V EMP70 PF02990.16 gi|134045168|ref|YP_001096654.1| - 0.049 12.3 0.2 0.049 12.3 0.2 1.0 1 0 0 1 1 1 0 Endomembrane protein 70 DUF2207 PF09972.9 gi|134045168|ref|YP_001096654.1| - 0.06 12.1 0.2 0.069 11.9 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) NADHdeh_related PF10125.9 gi|134045169|ref|YP_001096655.1| - 1.7e-99 331.6 14.6 1.9e-99 331.5 14.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_M PF00361.20 gi|134045169|ref|YP_001096655.1| - 6.3e-06 25.6 4.3 6.3e-06 25.6 4.3 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter SUR7 PF06687.12 gi|134045169|ref|YP_001096655.1| - 1.6 8.3 7.3 3.8 7.1 7.3 1.7 1 1 0 1 1 1 0 SUR7/PalI family DHHC PF01529.20 gi|134045169|ref|YP_001096655.1| - 8.4 6.5 6.8 1.4 9.0 2.9 1.7 2 0 0 2 2 2 0 DHHC palmitoyltransferase DUF2105 PF09878.9 gi|134045170|ref|YP_001096656.1| - 1.4e-84 282.8 10.2 1.6e-84 282.6 10.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2105) MnhB PF04039.13 gi|134045170|ref|YP_001096656.1| - 0.012 16.0 7.0 0.012 16.0 7.0 2.3 2 1 0 2 2 2 0 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|134045171|ref|YP_001096657.1| - 1.2e-67 226.1 0.5 1.4e-67 225.9 0.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) DUF2107 PF09880.9 gi|134045172|ref|YP_001096658.1| - 5.4e-35 119.3 4.6 6.3e-35 119.1 4.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) DUF2108 PF09881.9 gi|134045173|ref|YP_001096659.1| - 8.8e-27 92.9 8.6 1e-26 92.7 8.6 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2108) TssN PF17555.2 gi|134045173|ref|YP_001096659.1| - 0.086 12.2 3.6 0.094 12.1 3.6 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF2109 PF09882.9 gi|134045174|ref|YP_001096660.1| - 7.7e-33 112.4 6.9 8.7e-33 112.2 6.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2109) CarS-like PF01864.17 gi|134045174|ref|YP_001096660.1| - 0.036 14.1 1.5 0.043 13.8 1.5 1.1 1 0 0 1 1 1 0 CDP-archaeol synthase PhaG_MnhG_YufB PF03334.14 gi|134045174|ref|YP_001096660.1| - 0.25 11.6 5.2 0.33 11.2 5.2 1.1 1 0 0 1 1 1 0 Na+/H+ antiporter subunit DUF5408 PF17402.2 gi|134045174|ref|YP_001096660.1| - 1.4 8.9 7.0 0.49 10.3 4.6 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5408) FtsK_4TM PF13491.6 gi|134045175|ref|YP_001096661.1| - 1.7 8.3 11.3 2.6 7.7 1.1 2.6 2 1 1 3 3 3 0 4TM region of DNA translocase FtsK/SpoIIIE NiFe_hyd_3_EhaA PF17367.2 gi|134045176|ref|YP_001096662.1| - 7.4e-17 61.3 8.0 8.3e-17 61.1 8.0 1.0 1 0 0 1 1 1 1 NiFe-hydrogenase-type-3 Eha complex subunit A ATPase_gene1 PF09527.10 gi|134045176|ref|YP_001096662.1| - 0.3 11.3 8.0 0.071 13.3 1.2 2.3 1 1 1 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter PhoQ_Sensor PF08918.10 gi|134045176|ref|YP_001096662.1| - 0.76 9.6 3.7 9.1 6.1 0.6 2.0 1 1 1 2 2 2 0 PhoQ Sensor DUF2613 PF11021.8 gi|134045176|ref|YP_001096662.1| - 0.89 9.7 0.1 0.89 9.7 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2613) LapA_dom PF06305.11 gi|134045176|ref|YP_001096662.1| - 4.4 7.2 7.3 8.7 6.3 0.1 2.8 2 1 0 2 2 2 0 Lipopolysaccharide assembly protein A domain HTH_3 PF01381.22 gi|134045177|ref|YP_001096663.1| - 2.3e-10 40.4 0.2 5.2e-10 39.2 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|134045177|ref|YP_001096663.1| - 9.1e-08 32.0 0.3 3.1e-07 30.3 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|134045177|ref|YP_001096663.1| - 5.9e-05 23.3 0.0 0.00013 22.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|134045177|ref|YP_001096663.1| - 9.9e-05 22.1 0.2 0.0011 18.8 0.0 2.3 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_37 PF13744.6 gi|134045177|ref|YP_001096663.1| - 0.00041 20.3 0.1 0.00096 19.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HNF-1_N PF04814.13 gi|134045177|ref|YP_001096663.1| - 0.0064 17.1 0.0 0.0099 16.5 0.0 1.3 1 0 0 1 1 1 1 Hepatocyte nuclear factor 1 (HNF-1), N terminus HTH_25 PF13413.6 gi|134045177|ref|YP_001096663.1| - 0.047 13.5 0.1 0.19 11.6 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|134045177|ref|YP_001096663.1| - 0.075 13.1 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA zf-ZPR1 PF03367.13 gi|134045178|ref|YP_001096664.1| - 4.2e-39 134.0 0.1 4.9e-39 133.7 0.1 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|134045178|ref|YP_001096664.1| - 0.081 13.3 0.9 0.11 12.9 0.1 1.7 2 0 0 2 2 2 0 Restriction alleviation protein Lar GATase PF00117.28 gi|134045179|ref|YP_001096665.1| - 5.5e-41 140.4 0.1 6.1e-41 140.3 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|134045179|ref|YP_001096665.1| - 1.4e-14 54.4 0.2 1.6e-12 47.7 0.0 2.4 1 1 1 2 2 2 2 Peptidase C26 SNO PF01174.19 gi|134045179|ref|YP_001096665.1| - 0.0046 16.8 0.2 0.32 10.8 0.2 2.4 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_M24 PF00557.24 gi|134045180|ref|YP_001096666.1| - 5.8e-36 124.2 0.0 6.9e-36 123.9 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 MMR_HSR1_Xtn PF16897.5 gi|134045181|ref|YP_001096667.1| - 7.7e-33 112.7 0.3 1.3e-32 111.9 0.3 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|134045181|ref|YP_001096667.1| - 1.1e-21 77.1 0.0 2.7e-21 75.8 0.0 1.7 1 1 1 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|134045181|ref|YP_001096667.1| - 2.2e-21 75.7 0.0 4e-21 74.8 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|134045181|ref|YP_001096667.1| - 8.7e-14 51.3 0.8 1.8e-12 47.0 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|134045181|ref|YP_001096667.1| - 9.4e-07 28.9 0.7 0.03 14.2 0.0 3.0 3 0 0 3 3 3 2 RsgA GTPase GTP_EFTU PF00009.27 gi|134045181|ref|YP_001096667.1| - 0.00023 20.8 1.0 3.1 7.3 0.1 3.6 2 2 1 3 3 3 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|134045181|ref|YP_001096667.1| - 0.0037 16.7 0.3 0.98 8.8 0.0 2.8 2 2 0 2 2 2 1 ADP-ribosylation factor family cobW PF02492.19 gi|134045181|ref|YP_001096667.1| - 0.0043 16.6 2.0 2.7 7.5 0.0 2.9 2 1 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain RRG8 PF17068.5 gi|134045181|ref|YP_001096667.1| - 0.021 14.2 1.2 0.037 13.4 1.2 1.3 1 0 0 1 1 1 0 Required for respiratory growth protein 8 mitochondrial MeaB PF03308.16 gi|134045181|ref|YP_001096667.1| - 0.024 13.7 0.4 0.046 12.7 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Dynamin_N PF00350.23 gi|134045181|ref|YP_001096667.1| - 0.03 14.4 0.2 0.43 10.6 0.1 2.4 1 1 0 2 2 2 0 Dynamin family ATP_bind_1 PF03029.17 gi|134045181|ref|YP_001096667.1| - 0.042 13.6 0.1 4.9 6.9 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRPRB PF09439.10 gi|134045181|ref|YP_001096667.1| - 0.048 13.1 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_16 PF13191.6 gi|134045181|ref|YP_001096667.1| - 0.054 13.9 0.0 0.2 12.0 0.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|134045181|ref|YP_001096667.1| - 0.057 13.7 0.1 0.097 12.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|134045181|ref|YP_001096667.1| - 0.1 12.8 0.1 1.2 9.4 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase YchF-GTPase_C PF06071.13 gi|134045181|ref|YP_001096667.1| - 0.14 12.4 0.0 5 7.4 0.0 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF933) Ras PF00071.22 gi|134045181|ref|YP_001096667.1| - 0.17 11.5 0.2 18 4.9 0.0 2.4 2 0 0 2 2 2 0 Ras family HTH_5 PF01022.20 gi|134045182|ref|YP_001096668.1| - 4.6e-20 71.2 0.4 6.4e-20 70.8 0.4 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|134045182|ref|YP_001096668.1| - 6.5e-14 51.7 0.0 7.7e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|134045182|ref|YP_001096668.1| - 9.5e-07 28.3 0.1 1.3e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|134045182|ref|YP_001096668.1| - 0.00035 20.7 0.0 0.00048 20.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|134045182|ref|YP_001096668.1| - 0.00089 19.1 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|134045182|ref|YP_001096668.1| - 0.0047 17.3 0.0 0.0067 16.8 0.0 1.3 1 1 0 1 1 1 1 Penicillinase repressor DUF4423 PF14394.6 gi|134045182|ref|YP_001096668.1| - 0.0079 15.9 0.0 0.017 14.9 0.0 1.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) MarR PF01047.22 gi|134045182|ref|YP_001096668.1| - 0.035 14.0 0.1 0.048 13.6 0.1 1.2 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|134045182|ref|YP_001096668.1| - 0.048 14.0 0.0 0.074 13.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.9 gi|134045182|ref|YP_001096668.1| - 0.11 12.6 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MobB PF03205.14 gi|134045183|ref|YP_001096669.1| - 8.9e-20 70.9 0.1 1.2e-19 70.6 0.1 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.13 gi|134045183|ref|YP_001096669.1| - 3.8e-08 32.8 2.2 7e-08 32.0 2.2 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.19 gi|134045183|ref|YP_001096669.1| - 0.0036 16.9 0.8 0.0072 15.9 0.4 1.8 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 gi|134045183|ref|YP_001096669.1| - 0.017 14.7 0.1 0.026 14.1 0.1 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_14 PF13173.6 gi|134045183|ref|YP_001096669.1| - 0.072 13.1 0.1 0.16 12.0 0.0 1.6 1 1 1 2 2 2 0 AAA domain Radical_SAM PF04055.21 gi|134045184|ref|YP_001096670.1| - 1.1e-17 65.0 0.2 2.4e-17 63.8 0.2 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|134045184|ref|YP_001096670.1| - 1.6e-15 57.1 0.0 3.9e-15 56.0 0.0 1.7 1 0 0 1 1 1 1 Wyosine base formation DUF2119 PF09892.9 gi|134045184|ref|YP_001096670.1| - 0.094 12.1 0.2 0.25 10.7 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2119) PhosphMutase PF10143.9 gi|134045185|ref|YP_001096671.1| - 1.9e-55 187.4 0.0 4.3e-55 186.2 0.0 1.6 2 0 0 2 2 2 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|134045185|ref|YP_001096671.1| - 5.6e-47 160.2 0.1 6.4e-47 160.0 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|134045185|ref|YP_001096671.1| - 0.0011 18.6 0.6 0.005 16.5 0.1 2.1 3 0 0 3 3 3 1 Type I phosphodiesterase / nucleotide pyrophosphatase CAP PF00188.26 gi|134045186|ref|YP_001096672.1| - 1.8e-17 64.4 1.0 5.7e-17 62.7 0.0 2.2 2 0 0 2 2 2 1 Cysteine-rich secretory protein family VCX_VCY PF15231.6 gi|134045186|ref|YP_001096672.1| - 0.073 13.8 2.6 0.13 12.9 2.6 1.4 1 0 0 1 1 1 0 Variable charge X/Y family Nop14 PF04147.12 gi|134045186|ref|YP_001096672.1| - 0.14 10.4 10.1 0.18 10.0 10.1 1.1 1 0 0 1 1 1 0 Nop14-like family CDC45 PF02724.14 gi|134045186|ref|YP_001096672.1| - 0.18 10.1 5.9 0.23 9.7 5.9 1.2 1 0 0 1 1 1 0 CDC45-like protein Pex14_N PF04695.13 gi|134045186|ref|YP_001096672.1| - 0.88 10.2 5.8 1.5 9.5 5.8 1.3 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF908 PF06012.12 gi|134045186|ref|YP_001096672.1| - 0.96 8.8 9.7 1.3 8.4 9.7 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF908) SDA1 PF05285.12 gi|134045186|ref|YP_001096672.1| - 1.2 8.5 11.4 1.6 8.1 11.4 1.1 1 0 0 1 1 1 0 SDA1 DNA_pol_phi PF04931.13 gi|134045186|ref|YP_001096672.1| - 1.5 6.9 12.6 2 6.4 12.6 1.1 1 0 0 1 1 1 0 DNA polymerase phi Tir_receptor_C PF07489.11 gi|134045186|ref|YP_001096672.1| - 1.5 8.7 17.2 0.86 9.5 14.4 2.0 2 0 0 2 2 2 0 Translocated intimin receptor (Tir) C-terminus Presenilin PF01080.17 gi|134045186|ref|YP_001096672.1| - 4.9 5.8 6.4 6.8 5.3 6.4 1.1 1 0 0 1 1 1 0 Presenilin TP6A_N PF04406.14 gi|134045187|ref|YP_001096673.1| - 2.6e-14 52.9 0.0 4.5e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Acetyltransf_8 PF13523.6 gi|134045187|ref|YP_001096673.1| - 0.009 15.7 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Tubulin PF00091.25 gi|134045188|ref|YP_001096674.1| - 2.3e-43 148.7 3.1 4.1e-43 147.9 3.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|134045188|ref|YP_001096674.1| - 4.1e-33 113.5 3.6 5e-33 113.3 0.9 2.6 2 1 0 2 2 2 1 FtsZ family, C-terminal domain AlaDh_PNT_C PF01262.21 gi|134045188|ref|YP_001096674.1| - 0.001 18.4 1.1 0.0018 17.6 1.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ZT_dimer PF16916.5 gi|134045188|ref|YP_001096674.1| - 0.011 15.8 0.0 0.044 13.9 0.0 2.0 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter NAD_binding_2 PF03446.15 gi|134045188|ref|YP_001096674.1| - 0.07 13.3 2.9 0.25 11.5 0.3 2.8 2 1 1 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase Tubulin_2 PF13809.6 gi|134045188|ref|YP_001096674.1| - 0.24 10.5 5.2 0.31 10.2 1.2 2.3 1 1 1 2 2 2 0 Tubulin like SecE PF00584.20 gi|134045189|ref|YP_001096675.1| - 1.5e-07 31.2 0.0 1.9e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|134045190|ref|YP_001096676.1| - 1.3e-22 79.5 0.0 2e-22 78.9 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|134045190|ref|YP_001096676.1| - 1.3e-07 31.3 0.5 1.3e-07 31.3 0.5 1.8 2 0 0 2 2 2 1 KOW motif NusG PF02357.19 gi|134045190|ref|YP_001096676.1| - 0.00022 21.7 0.1 0.0071 16.8 0.0 2.6 2 1 0 2 2 2 1 Transcription termination factor nusG Ribosomal_L11_N PF03946.14 gi|134045191|ref|YP_001096677.1| - 5.3e-24 83.8 0.6 1.3e-23 82.6 0.6 1.6 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|134045191|ref|YP_001096677.1| - 1.1e-21 77.1 1.6 1.9e-21 76.4 1.6 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain DUF4479 PF14794.6 gi|134045191|ref|YP_001096677.1| - 0.011 15.6 0.7 0.043 13.7 0.0 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4479) Adenylsucc_synt PF00709.21 gi|134045192|ref|YP_001096678.1| - 2.3e-86 290.3 5.5 5.3e-43 147.5 0.1 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase CytochromB561_N PF09786.9 gi|134045192|ref|YP_001096678.1| - 0.038 13.0 0.0 0.049 12.6 0.0 1.1 1 0 0 1 1 1 0 Cytochrome B561, N terminal AAA_18 PF13238.6 gi|134045193|ref|YP_001096679.1| - 2e-08 34.8 0.2 5.6e-08 33.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain ATP-cone PF03477.16 gi|134045193|ref|YP_001096679.1| - 2.9e-07 31.0 0.7 8.2e-07 29.5 0.0 2.0 2 0 0 2 2 2 1 ATP cone domain AAA_33 PF13671.6 gi|134045193|ref|YP_001096679.1| - 6.6e-05 23.1 0.0 0.0017 18.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|134045193|ref|YP_001096679.1| - 0.0059 15.9 0.1 1.2 8.4 0.0 3.0 3 0 0 3 3 3 1 Zeta toxin AAA_17 PF13207.6 gi|134045193|ref|YP_001096679.1| - 0.018 15.4 0.2 0.49 10.8 0.0 2.9 1 1 1 2 2 2 0 AAA domain Cytidylate_kin2 PF13189.6 gi|134045193|ref|YP_001096679.1| - 0.038 14.1 0.0 0.088 12.9 0.0 1.8 1 1 0 1 1 1 0 Cytidylate kinase-like family PRK PF00485.18 gi|134045193|ref|YP_001096679.1| - 0.051 13.3 0.0 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.6 gi|134045193|ref|YP_001096679.1| - 0.066 13.5 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|134045193|ref|YP_001096679.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase TrkH PF02386.16 gi|134045194|ref|YP_001096680.1| - 5.1e-52 177.0 25.3 2.7e-29 102.0 10.7 2.1 1 1 1 2 2 2 2 Cation transport protein TFIIS_C PF01096.18 gi|134045195|ref|YP_001096681.1| - 5.4e-18 64.6 8.3 5.4e-18 64.6 8.3 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|134045195|ref|YP_001096681.1| - 2.8e-09 36.7 0.8 2.8e-09 36.7 0.8 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|134045195|ref|YP_001096681.1| - 0.00057 19.8 12.7 0.00073 19.5 3.9 2.6 2 1 0 2 2 2 1 Transposase zinc-ribbon domain DUF1283 PF06932.11 gi|134045195|ref|YP_001096681.1| - 0.011 16.0 0.5 0.015 15.5 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1283) DUF2752 PF10825.8 gi|134045195|ref|YP_001096681.1| - 0.011 15.8 0.2 0.011 15.8 0.2 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF2752) FAM183 PF14886.6 gi|134045195|ref|YP_001096681.1| - 0.034 14.9 0.1 0.037 14.8 0.1 1.1 1 0 0 1 1 1 0 FAM183A and FAM183B related zinc-ribbons_6 PF07191.12 gi|134045195|ref|YP_001096681.1| - 0.037 14.0 10.8 0.086 12.8 0.3 2.8 1 1 0 2 2 2 0 zinc-ribbons zinc_ribbon_4 PF13717.6 gi|134045195|ref|YP_001096681.1| - 0.072 13.0 20.0 0.2 11.6 0.6 4.6 4 1 1 5 5 5 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|134045195|ref|YP_001096681.1| - 0.091 12.3 8.6 17 5.1 0.1 4.2 4 0 0 4 4 4 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|134045195|ref|YP_001096681.1| - 0.12 12.3 10.6 0.83 9.6 3.5 2.6 2 1 0 2 2 2 0 Putative transposase DNA-binding domain TackOD1 PF18551.1 gi|134045195|ref|YP_001096681.1| - 0.23 11.1 9.9 0.23 11.1 3.1 2.7 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 DZR PF12773.7 gi|134045195|ref|YP_001096681.1| - 0.34 11.0 11.6 1 9.5 0.5 3.0 2 1 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|134045195|ref|YP_001096681.1| - 0.95 9.0 14.5 1.3 8.5 0.1 3.5 3 1 0 3 3 3 0 zinc-ribbon domain VP_N-CPKC PF11475.8 gi|134045195|ref|YP_001096681.1| - 1.2 9.2 6.8 21 5.1 0.1 3.4 3 0 0 3 3 3 0 Virion protein N terminal domain TerY_C PF15616.6 gi|134045195|ref|YP_001096681.1| - 1.8 8.7 8.5 0.62 10.2 1.5 2.2 1 1 1 2 2 2 0 TerY-C metal binding domain DUF2387 PF09526.10 gi|134045195|ref|YP_001096681.1| - 3 8.0 16.9 8 6.7 3.8 2.9 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) Auto_anti-p27 PF06677.12 gi|134045195|ref|YP_001096681.1| - 5.4 7.3 14.6 0.2 11.8 4.3 2.8 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RecR PF02132.15 gi|134045195|ref|YP_001096681.1| - 6.5 6.4 11.0 7.2 6.3 2.7 3.6 3 1 0 3 3 3 0 RecR protein A2L_zn_ribbon PF08792.10 gi|134045195|ref|YP_001096681.1| - 7 6.5 17.2 5.3 6.9 0.4 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|134045195|ref|YP_001096681.1| - 9.9 6.4 16.6 23 5.2 0.9 4.1 3 1 0 3 3 3 0 Zinc ribbon domain Sec61_beta PF03911.16 gi|134045196|ref|YP_001096682.1| - 1e-14 54.2 0.3 1.2e-14 54.0 0.3 1.1 1 0 0 1 1 1 1 Sec61beta family DUF711 PF05167.12 gi|134045197|ref|YP_001096683.1| - 1.2e-173 577.7 9.9 1.5e-173 577.4 9.9 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) DCD PF06559.11 gi|134045198|ref|YP_001096684.1| - 2e-07 30.2 0.0 1.4e-05 24.0 0.0 2.4 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|134045198|ref|YP_001096684.1| - 4.7e-07 29.5 0.0 8.5e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 dUTPase Trm56 PF01994.16 gi|134045199|ref|YP_001096685.1| - 1.4e-50 170.2 0.0 2e-50 169.7 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.6 gi|134045199|ref|YP_001096685.1| - 0.0019 17.6 0.0 0.0025 17.2 0.0 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP STT3 PF02516.14 gi|134045200|ref|YP_001096686.1| - 4.4e-89 299.6 33.7 5.8e-89 299.2 33.7 1.1 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Glycos_transf_4 PF00953.21 gi|134045201|ref|YP_001096687.1| - 1.5e-26 93.3 19.2 2.6e-26 92.5 16.1 2.6 1 1 0 1 1 1 1 Glycosyl transferase family 4 SecY PF00344.20 gi|134045202|ref|YP_001096688.1| - 3.3e-66 223.6 22.1 4.2e-66 223.3 22.1 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|134045202|ref|YP_001096688.1| - 0.0047 16.7 0.6 0.11 12.3 0.1 3.2 3 0 0 3 3 3 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|134045203|ref|YP_001096689.1| - 1.8e-24 86.9 0.5 2.3e-24 86.5 0.5 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|134045203|ref|YP_001096689.1| - 0.02 14.3 0.0 0.02 14.3 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein 60S L18 and 50S L18e DUF4542 PF15075.6 gi|134045203|ref|YP_001096689.1| - 0.087 13.2 0.8 0.13 12.6 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4542) Ribosomal_L30 PF00327.20 gi|134045204|ref|YP_001096690.1| - 1.7e-15 56.6 0.2 1.7e-15 56.6 0.2 1.6 2 0 0 2 2 2 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.20 gi|134045205|ref|YP_001096691.1| - 5.4e-26 90.4 2.5 1.6e-25 88.9 2.5 1.9 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|134045205|ref|YP_001096691.1| - 1.4e-23 82.1 0.1 2.1e-23 81.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 gi|134045206|ref|YP_001096692.1| - 1.8e-29 102.9 1.9 1.2e-17 64.4 0.1 2.9 2 1 1 3 3 3 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|134045206|ref|YP_001096692.1| - 4e-10 40.5 0.2 6.8e-10 39.8 0.2 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|134045206|ref|YP_001096692.1| - 3.8e-05 24.0 0.0 5.9e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|134045207|ref|YP_001096693.1| - 5.1e-55 185.5 11.8 5.6e-55 185.4 11.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e baeRF_family12 PF18856.1 gi|134045207|ref|YP_001096693.1| - 0.0026 18.3 0.9 0.0048 17.5 0.9 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 12 Ribosomal_L32e PF01655.18 gi|134045208|ref|YP_001096694.1| - 1.9e-33 115.1 0.0 2.5e-33 114.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|134045209|ref|YP_001096695.1| - 4.9e-30 104.0 8.2 3.2e-16 59.7 0.8 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HSP20 PF00011.21 gi|134045209|ref|YP_001096695.1| - 0.084 13.0 2.2 16 5.7 0.1 3.1 2 1 1 3 3 3 0 Hsp20/alpha crystallin family ChpA-C PF03777.13 gi|134045209|ref|YP_001096695.1| - 0.23 11.4 3.6 2.4 8.1 0.1 2.7 3 0 0 3 3 3 0 ChpA-C Ribosomal_S8 PF00410.19 gi|134045210|ref|YP_001096696.1| - 2.1e-25 89.1 0.0 2.7e-25 88.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|134045211|ref|YP_001096697.1| - 6.6e-13 48.2 2.7 7e-13 48.1 2.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DZR PF12773.7 gi|134045211|ref|YP_001096697.1| - 0.0085 16.1 0.2 0.012 15.6 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon Prim_Zn_Ribbon PF08273.12 gi|134045211|ref|YP_001096697.1| - 0.015 15.6 2.1 0.099 12.9 0.4 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DUF1289 PF06945.13 gi|134045211|ref|YP_001096697.1| - 0.025 14.4 0.8 3.9 7.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1289) Ribosomal_L5_C PF00673.21 gi|134045212|ref|YP_001096698.1| - 2e-22 79.1 0.0 3.5e-22 78.4 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|134045212|ref|YP_001096698.1| - 2e-17 63.3 0.1 3.2e-17 62.6 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Tn916-Xis PF09035.10 gi|134045212|ref|YP_001096698.1| - 0.086 13.1 0.0 41 4.5 0.0 3.0 3 0 0 3 3 3 0 Excisionase from transposon Tn916 Ribosomal_S4e PF00900.20 gi|134045213|ref|YP_001096699.1| - 2.2e-22 78.7 0.3 4.1e-22 77.9 0.3 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|134045213|ref|YP_001096699.1| - 6e-18 64.7 3.9 1e-17 63.9 3.9 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|134045213|ref|YP_001096699.1| - 7.9e-07 28.7 0.6 7.5e-06 25.6 0.0 2.4 2 0 0 2 2 2 1 S4 domain KOW PF00467.29 gi|134045213|ref|YP_001096699.1| - 0.00058 19.7 1.3 0.0011 18.9 0.1 2.2 3 0 0 3 3 3 1 KOW motif Ribosomal_L26 PF16906.5 gi|134045214|ref|YP_001096700.1| - 9e-29 99.8 0.3 1.1e-28 99.5 0.3 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|134045214|ref|YP_001096700.1| - 6.3e-07 29.1 2.9 6.5e-07 29.1 1.8 1.6 2 0 0 2 2 2 1 KOW motif SH3_2 PF07653.17 gi|134045214|ref|YP_001096700.1| - 0.014 15.0 0.1 0.021 14.5 0.1 1.3 1 0 0 1 1 1 0 Variant SH3 domain tRNA_anti-like PF12869.7 gi|134045214|ref|YP_001096700.1| - 0.14 11.7 2.0 0.97 9.0 0.6 2.0 1 1 1 2 2 2 0 tRNA_anti-like Ribosomal_L14 PF00238.19 gi|134045215|ref|YP_001096701.1| - 1.1e-32 112.6 0.1 1.5e-32 112.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|134045216|ref|YP_001096702.1| - 2.5e-23 82.0 2.2 3.2e-23 81.6 2.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|134045216|ref|YP_001096702.1| - 0.0026 18.1 0.0 0.0053 17.1 0.0 1.6 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal UPF0086 PF01868.16 gi|134045217|ref|YP_001096703.1| - 3.6e-22 78.1 0.7 4.1e-22 77.9 0.7 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 SUI1 PF01253.22 gi|134045218|ref|YP_001096704.1| - 6.3e-21 74.7 0.5 8e-21 74.4 0.5 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.15 gi|134045218|ref|YP_001096704.1| - 0.0046 16.7 0.7 0.0067 16.2 0.7 1.2 1 0 0 1 1 1 1 DTW domain Img2 PF05046.14 gi|134045218|ref|YP_001096704.1| - 0.03 14.6 0.1 0.042 14.2 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) Ribosomal_L29 PF00831.23 gi|134045219|ref|YP_001096705.1| - 5.5e-21 74.3 0.2 6.5e-21 74.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein SAB PF04382.13 gi|134045219|ref|YP_001096705.1| - 0.026 14.6 0.2 2.7 8.1 0.0 2.3 2 0 0 2 2 2 0 SAB domain DUF1192 PF06698.11 gi|134045219|ref|YP_001096705.1| - 0.83 9.8 6.5 0.37 10.9 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Ribosomal_S3_C PF00189.20 gi|134045220|ref|YP_001096706.1| - 2.1e-24 85.9 1.7 2.5e-24 85.6 0.8 1.6 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|134045220|ref|YP_001096706.1| - 3.7e-13 49.1 0.2 8.6e-13 47.9 0.2 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|134045220|ref|YP_001096706.1| - 0.0033 17.2 2.4 0.012 15.4 0.0 2.7 3 0 0 3 3 3 1 KH domain KH_4 PF13083.6 gi|134045220|ref|YP_001096706.1| - 0.035 14.0 0.0 0.075 12.9 0.0 1.7 1 0 0 1 1 1 0 KH domain Ribosomal_L22 PF00237.19 gi|134045221|ref|YP_001096707.1| - 9.4e-28 96.5 0.2 1.3e-27 96.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e EF1_GNE PF00736.19 gi|134045223|ref|YP_001096709.1| - 4.6e-15 55.6 1.3 5.1e-15 55.4 1.3 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain Limkain-b1 PF11608.8 gi|134045223|ref|YP_001096709.1| - 0.055 13.6 0.0 0.081 13.0 0.0 1.3 1 0 0 1 1 1 0 Limkain b1 DUF1610 PF07754.11 gi|134045224|ref|YP_001096710.1| - 3.7e-15 55.6 4.8 3.7e-15 55.6 4.8 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 gi|134045224|ref|YP_001096710.1| - 0.00017 21.1 17.8 0.00092 18.8 4.2 3.6 2 2 0 2 2 2 1 zinc-ribbon domain zf-CHY PF05495.12 gi|134045224|ref|YP_001096710.1| - 0.0014 19.1 10.8 0.0023 18.4 10.8 1.4 1 1 0 1 1 1 1 CHY zinc finger Elf1 PF05129.13 gi|134045224|ref|YP_001096710.1| - 0.0057 16.7 10.3 0.36 10.9 10.4 2.7 1 1 0 1 1 1 1 Transcription elongation factor Elf1 like DZR PF12773.7 gi|134045224|ref|YP_001096710.1| - 0.0068 16.4 13.6 0.085 12.9 13.4 2.2 1 1 0 1 1 1 1 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|134045224|ref|YP_001096710.1| - 0.0094 16.1 10.7 0.0098 16.0 5.8 2.0 1 1 1 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|134045224|ref|YP_001096710.1| - 0.011 15.8 13.0 0.012 15.6 2.1 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|134045224|ref|YP_001096710.1| - 0.033 13.8 13.2 3.2 7.4 0.2 4.0 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger RecR PF02132.15 gi|134045224|ref|YP_001096710.1| - 0.034 13.7 2.4 0.034 13.7 2.4 2.6 1 1 1 2 2 2 0 RecR protein PhnA_Zn_Ribbon PF08274.12 gi|134045224|ref|YP_001096710.1| - 0.038 14.0 12.5 0.49 10.4 2.9 3.5 3 1 0 3 3 3 0 PhnA Zinc-Ribbon Prok-RING_1 PF14446.6 gi|134045224|ref|YP_001096710.1| - 0.04 13.8 0.9 0.04 13.8 0.9 2.9 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.12 gi|134045224|ref|YP_001096710.1| - 0.078 13.0 11.6 0.72 9.9 11.6 2.0 1 1 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|134045224|ref|YP_001096710.1| - 0.1 12.8 15.3 0.14 12.3 5.0 2.9 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|134045224|ref|YP_001096710.1| - 0.18 11.7 16.8 1.3 9.0 4.1 3.8 2 1 1 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|134045224|ref|YP_001096710.1| - 0.21 11.6 12.2 0.14 12.1 1.5 2.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|134045224|ref|YP_001096710.1| - 0.22 11.0 18.6 2.7 7.5 0.8 3.7 3 1 0 3 3 3 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|134045224|ref|YP_001096710.1| - 0.24 11.9 16.7 1.9 9.1 0.4 3.9 3 1 1 4 4 4 0 Zinc-finger double domain tRNA-synt_1f PF01921.18 gi|134045224|ref|YP_001096710.1| - 0.43 9.4 0.9 0.41 9.5 0.9 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (K) zf-C2HC5 PF06221.13 gi|134045224|ref|YP_001096710.1| - 0.45 10.5 12.3 1.1 9.4 0.2 2.3 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type NMDAR2_C PF10565.9 gi|134045224|ref|YP_001096710.1| - 0.48 9.2 5.6 0.52 9.1 5.6 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus zf-RING_2 PF13639.6 gi|134045224|ref|YP_001096710.1| - 0.49 10.8 10.1 0.86 10.0 10.1 1.5 1 1 0 1 1 1 0 Ring finger domain DUF2752 PF10825.8 gi|134045224|ref|YP_001096710.1| - 0.7 10.0 5.5 2.4 8.3 0.1 2.4 3 0 0 3 3 2 0 Protein of unknown function (DUF2752) zf-Mss51 PF13824.6 gi|134045224|ref|YP_001096710.1| - 0.84 9.8 10.3 4.4 7.5 2.3 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-NADH-PPase PF09297.11 gi|134045224|ref|YP_001096710.1| - 0.91 9.2 12.0 9.4 6.0 0.1 3.9 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Anti-TRAP PF15777.5 gi|134045224|ref|YP_001096710.1| - 0.93 9.5 12.6 0.17 11.9 5.8 2.1 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF1272 PF06906.11 gi|134045224|ref|YP_001096710.1| - 1.1 9.5 16.0 82 3.4 16.0 3.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-RING_5 PF14634.6 gi|134045224|ref|YP_001096710.1| - 1.4 8.9 13.6 51 3.9 13.5 2.5 1 1 0 1 1 1 0 zinc-RING finger domain DUF2072 PF09845.9 gi|134045224|ref|YP_001096710.1| - 1.5 9.1 10.6 0.35 11.1 4.7 2.0 1 1 1 2 2 2 0 Zn-ribbon containing protein zf-C3HC4_3 PF13920.6 gi|134045224|ref|YP_001096710.1| - 1.5 8.7 14.7 24 4.9 14.7 2.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PolC_DP2 PF03833.13 gi|134045224|ref|YP_001096710.1| - 2.3 6.0 9.2 2.6 5.8 9.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 TF_Zn_Ribbon PF08271.12 gi|134045224|ref|YP_001096710.1| - 2.3 7.8 15.5 0.19 11.2 2.5 3.0 2 1 1 3 3 3 0 TFIIB zinc-binding zf-C6H2 PF15801.5 gi|134045224|ref|YP_001096710.1| - 2.3 8.6 11.8 4.6 7.6 2.0 2.7 1 1 1 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding Zn_Tnp_IS1595 PF12760.7 gi|134045224|ref|YP_001096710.1| - 2.4 8.2 17.6 1 9.4 4.9 3.3 1 1 1 3 3 3 0 Transposase zinc-ribbon domain Prok-RING_4 PF14447.6 gi|134045224|ref|YP_001096710.1| - 2.8 7.9 11.7 32 4.5 11.6 2.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 DUF35_N PF12172.8 gi|134045224|ref|YP_001096710.1| - 3 7.8 12.5 11 6.0 0.3 3.7 3 1 1 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L37ae PF01780.19 gi|134045224|ref|YP_001096710.1| - 3.2 7.9 9.1 4.6 7.4 0.5 3.0 1 1 2 3 3 3 0 Ribosomal L37ae protein family zinc_ribbon_10 PF10058.9 gi|134045224|ref|YP_001096710.1| - 3.3 7.5 15.7 1.5 8.6 3.0 3.4 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|134045224|ref|YP_001096710.1| - 3.8 7.5 17.8 5.8 6.9 6.3 3.1 2 1 2 4 4 4 0 HIT zinc finger zf-MYND PF01753.18 gi|134045224|ref|YP_001096710.1| - 5.6 7.2 14.8 3.2 7.9 7.9 2.6 1 1 0 2 2 2 0 MYND finger zf-C3HC4_4 PF15227.6 gi|134045224|ref|YP_001096710.1| - 5.6 7.2 12.9 0.51 10.5 2.2 2.4 2 1 0 2 2 2 0 zinc finger of C3HC4-type, RING DiS_P_DiS PF06750.13 gi|134045224|ref|YP_001096710.1| - 6.3 7.0 10.1 11 6.2 2.2 2.7 1 1 2 3 3 3 0 Bacterial Peptidase A24 N-terminal domain Dynactin_p62 PF05502.13 gi|134045224|ref|YP_001096710.1| - 6.9 5.3 10.1 7.9 5.1 10.1 1.0 1 0 0 1 1 1 0 Dynactin p62 family Zn_Tnp_IS91 PF14319.6 gi|134045224|ref|YP_001096710.1| - 7.3 6.7 11.2 1.1 9.3 1.6 2.2 1 1 1 2 2 2 0 Transposase zinc-binding domain XPA_N PF01286.18 gi|134045224|ref|YP_001096710.1| - 8.3 6.6 16.4 28 4.9 6.0 3.8 2 1 2 4 4 4 0 XPA protein N-terminal Rubredoxin PF00301.20 gi|134045224|ref|YP_001096710.1| - 9.5 6.3 14.3 3.7 7.6 1.5 3.3 1 1 3 4 4 4 0 Rubredoxin AA_kinase PF00696.28 gi|134045225|ref|YP_001096711.1| - 1.5e-17 64.0 0.4 2.1e-15 57.0 0.4 2.1 1 1 0 1 1 1 1 Amino acid kinase family CutC PF03932.14 gi|134045225|ref|YP_001096711.1| - 0.0097 15.4 0.1 0.016 14.7 0.1 1.3 1 0 0 1 1 1 1 CutC family Peptidase_M20 PF01546.28 gi|134045226|ref|YP_001096712.1| - 2.7e-31 108.9 0.0 3.4e-31 108.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|134045226|ref|YP_001096712.1| - 9.2e-16 57.7 0.0 1.7e-15 56.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF1700 PF08006.11 gi|134045226|ref|YP_001096712.1| - 0.0079 15.8 2.0 0.016 14.7 2.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1700) Peptidase_M28 PF04389.17 gi|134045226|ref|YP_001096712.1| - 0.027 14.2 0.0 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M28 DUF5382 PF17354.2 gi|134045226|ref|YP_001096712.1| - 0.05 12.4 0.1 0.081 11.8 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5382) Methyltransf_18 PF12847.7 gi|134045226|ref|YP_001096712.1| - 0.084 12.8 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF1031 PF06275.11 gi|134045226|ref|YP_001096712.1| - 4.6 7.6 8.5 17 5.7 0.4 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1031) SMC_N PF02463.19 gi|134045227|ref|YP_001096713.1| - 9.2e-52 175.7 65.0 6.6e-51 172.9 65.0 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|134045227|ref|YP_001096713.1| - 1.3e-30 106.1 0.0 5.6e-30 104.1 0.0 2.2 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_21 PF13304.6 gi|134045227|ref|YP_001096713.1| - 8.4e-08 32.4 41.7 0.00054 19.9 18.8 5.4 2 2 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|134045227|ref|YP_001096713.1| - 6.4e-07 29.0 0.0 1.3e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MscS_porin PF12795.7 gi|134045227|ref|YP_001096713.1| - 1.1e-06 28.4 67.1 2.5e-05 24.0 6.3 5.5 3 1 2 5 5 5 3 Mechanosensitive ion channel porin domain AAA_15 PF13175.6 gi|134045227|ref|YP_001096713.1| - 4.4e-06 26.7 38.8 4.4e-06 26.7 38.8 4.4 2 2 2 4 4 2 2 AAA ATPase domain CALCOCO1 PF07888.11 gi|134045227|ref|YP_001096713.1| - 0.001 18.0 39.6 0.001 18.0 39.6 5.4 2 2 4 6 6 5 2 Calcium binding and coiled-coil domain (CALCOCO1) like APG6_N PF17675.1 gi|134045227|ref|YP_001096713.1| - 0.0019 18.7 26.6 0.0019 18.7 26.6 8.4 4 3 5 9 9 8 3 Apg6 coiled-coil region DUF3450 PF11932.8 gi|134045227|ref|YP_001096713.1| - 0.0044 16.4 13.7 0.0044 16.4 13.7 7.5 3 2 3 7 7 7 3 Protein of unknown function (DUF3450) BRE1 PF08647.11 gi|134045227|ref|YP_001096713.1| - 0.0045 17.0 23.5 0.0045 17.0 23.5 10.8 7 3 5 12 12 11 3 BRE1 E3 ubiquitin ligase Spc7 PF08317.11 gi|134045227|ref|YP_001096713.1| - 0.043 12.7 127.4 0.1 11.4 26.4 7.2 2 2 5 7 7 7 0 Spc7 kinetochore protein ABC_tran PF00005.27 gi|134045227|ref|YP_001096713.1| - 0.12 12.9 0.1 0.12 12.9 0.1 6.5 3 2 1 4 4 2 0 ABC transporter DUF4407 PF14362.6 gi|134045227|ref|YP_001096713.1| - 1.5 8.1 60.8 0.24 10.7 5.9 4.8 2 2 2 4 4 4 0 Domain of unknown function (DUF4407) Baculo_PEP_C PF04513.12 gi|134045227|ref|YP_001096713.1| - 1.5 8.9 43.5 0.05 13.6 4.1 6.2 3 3 3 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_23 PF13476.6 gi|134045227|ref|YP_001096713.1| - 2.6 8.5 164.9 6.9 7.1 25.4 7.5 2 2 2 4 4 1 0 AAA domain Aminotran_1_2 PF00155.21 gi|134045228|ref|YP_001096714.1| - 6.3e-34 117.7 0.0 8.5e-34 117.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|134045228|ref|YP_001096714.1| - 0.062 12.6 0.0 0.14 11.4 0.0 1.5 1 0 0 1 1 1 0 Beta-eliminating lyase Helicase_C PF00271.31 gi|134045229|ref|YP_001096715.1| - 1.9e-27 95.8 1.3 4.3e-23 81.8 0.1 3.6 3 0 0 3 3 3 2 Helicase conserved C-terminal domain ERCC4 PF02732.15 gi|134045229|ref|YP_001096715.1| - 1.5e-22 80.5 0.3 4.7e-22 78.9 0.3 1.9 1 0 0 1 1 1 1 ERCC4 domain ResIII PF04851.15 gi|134045229|ref|YP_001096715.1| - 1.9e-20 73.6 9.2 2.1e-20 73.4 0.1 3.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|134045229|ref|YP_001096715.1| - 3.1e-18 66.2 5.3 3.2e-18 66.1 0.1 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase HHH_2 PF12826.7 gi|134045229|ref|YP_001096715.1| - 3.9e-11 42.9 0.0 4.6e-10 39.4 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|134045229|ref|YP_001096715.1| - 7.4e-11 41.3 0.5 1.4e-07 31.0 0.1 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|134045229|ref|YP_001096715.1| - 5.1e-10 39.8 0.0 1.9e-09 38.0 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|134045229|ref|YP_001096715.1| - 0.00034 20.8 0.1 0.012 15.8 0.0 3.6 3 1 0 3 3 3 1 Helix-hairpin-helix motif Helicase_RecD PF05127.14 gi|134045229|ref|YP_001096715.1| - 0.0015 18.4 3.4 0.0046 16.8 0.0 3.2 4 1 0 4 4 4 1 Helicase SecA_DEAD PF07517.14 gi|134045229|ref|YP_001096715.1| - 0.018 14.3 1.7 0.17 11.2 0.0 2.6 2 1 1 3 3 3 0 SecA DEAD-like domain 5_3_exonuc PF01367.20 gi|134045229|ref|YP_001096715.1| - 0.023 15.3 0.0 0.023 15.3 0.0 4.2 4 2 1 5 5 4 0 5'-3' exonuclease, C-terminal SAM fold Polysacc_deac_1 PF01522.21 gi|134045229|ref|YP_001096715.1| - 0.025 14.5 0.0 0.6 10.0 0.0 2.6 2 0 0 2 2 2 0 Polysaccharide deacetylase TetR_C_37 PF18665.1 gi|134045229|ref|YP_001096715.1| - 4.3 8.0 11.1 0.87 10.2 1.3 3.6 4 0 0 4 4 3 0 Tetracyclin repressor-like, C-terminal domain DHquinase_I PF01487.15 gi|134045230|ref|YP_001096716.1| - 1.6e-62 211.8 0.3 1.8e-62 211.6 0.3 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DUF371 PF04027.13 gi|134045231|ref|YP_001096717.1| - 8.3e-53 177.9 3.8 9.2e-53 177.8 3.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF1521 PF07481.11 gi|134045231|ref|YP_001096717.1| - 0.03 14.4 1.1 0.046 13.7 1.1 1.4 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1521) DUF3990 PF13151.6 gi|134045231|ref|YP_001096717.1| - 0.062 13.0 0.0 0.1 12.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3990) RtcB PF01139.17 gi|134045232|ref|YP_001096718.1| - 4.6e-183 609.1 0.2 5.3e-183 608.9 0.2 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Semialdhyde_dhC PF02774.18 gi|134045233|ref|YP_001096719.1| - 1.4e-39 136.1 0.0 1.9e-39 135.7 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|134045233|ref|YP_001096719.1| - 2.2e-36 124.9 0.0 4.5e-36 123.9 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|134045233|ref|YP_001096719.1| - 0.00092 20.0 0.0 0.0017 19.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|134045233|ref|YP_001096719.1| - 0.001 19.2 0.0 0.0019 18.3 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_C PF02800.20 gi|134045233|ref|YP_001096719.1| - 0.0011 18.6 0.1 0.026 14.1 0.0 2.3 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DXP_reductoisom PF02670.16 gi|134045233|ref|YP_001096719.1| - 0.003 18.3 0.0 0.0059 17.3 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.6 gi|134045233|ref|YP_001096719.1| - 0.12 12.3 0.0 0.24 11.2 0.0 1.5 1 1 0 1 1 1 0 NAD(P)H-binding zinc_ribbon_4 PF13717.6 gi|134045234|ref|YP_001096720.1| - 0.001 19.0 0.7 1.4 8.9 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Elf1 PF05129.13 gi|134045234|ref|YP_001096720.1| - 0.0014 18.6 1.8 0.0015 18.5 1.8 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Cys_rich_CPXG PF14255.6 gi|134045234|ref|YP_001096720.1| - 0.012 15.5 1.7 0.072 13.0 1.7 1.9 1 1 0 1 1 1 0 Cysteine-rich CPXCG zf-NADH-PPase PF09297.11 gi|134045234|ref|YP_001096720.1| - 0.048 13.3 1.1 3.9 7.2 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|134045234|ref|YP_001096720.1| - 0.089 12.6 3.8 0.86 9.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|134045234|ref|YP_001096720.1| - 0.17 11.4 7.5 3.1 7.3 2.0 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|134045234|ref|YP_001096720.1| - 0.19 11.6 7.4 0.14 12.1 2.1 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf_UBZ PF18439.1 gi|134045234|ref|YP_001096720.1| - 0.21 11.2 2.5 1.8 8.3 0.2 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-TFIIB PF13453.6 gi|134045234|ref|YP_001096720.1| - 1.1 8.7 6.3 1.7 8.0 6.3 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger DUF2614 PF11023.8 gi|134045234|ref|YP_001096720.1| - 1.7 8.7 4.4 2.7 8.1 1.5 1.9 1 1 1 2 2 2 0 Zinc-ribbon containing domain Thioredoxin_3 PF13192.6 gi|134045235|ref|YP_001096721.1| - 3.7e-18 65.3 0.7 4.1e-18 65.2 0.7 1.0 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.14 gi|134045235|ref|YP_001096721.1| - 0.086 13.3 0.1 0.11 13.0 0.1 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Zeta_toxin PF06414.12 gi|134045235|ref|YP_001096721.1| - 0.11 11.7 0.1 0.23 10.7 0.1 1.6 1 1 0 1 1 1 0 Zeta toxin Memo PF01875.17 gi|134045236|ref|YP_001096722.1| - 1.2e-84 283.7 0.1 1.4e-84 283.5 0.1 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|134045236|ref|YP_001096722.1| - 2.7e-05 23.4 0.0 3.3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase LeuA_dimer PF08502.10 gi|134045236|ref|YP_001096722.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 LeuA allosteric (dimerisation) domain DUF389 PF04087.14 gi|134045237|ref|YP_001096723.1| - 4.4e-28 98.1 17.5 1e-27 96.9 17.5 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF389) FrhB_FdhB_C PF04432.13 gi|134045238|ref|YP_001096724.1| - 4.1e-45 153.4 0.1 5.9e-45 152.9 0.1 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|134045238|ref|YP_001096724.1| - 9.9e-25 86.5 1.8 2.4e-24 85.3 0.5 2.0 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Oxidored_q6 PF01058.22 gi|134045239|ref|YP_001096725.1| - 7.1e-29 100.3 0.8 7.1e-29 100.3 0.8 2.2 2 1 0 2 2 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|134045239|ref|YP_001096725.1| - 4.7e-11 42.0 19.3 5.9e-08 32.2 1.7 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134045239|ref|YP_001096725.1| - 1.4e-06 28.1 19.0 6.5e-05 22.8 2.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134045239|ref|YP_001096725.1| - 2e-06 27.9 11.0 2e-06 27.9 11.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134045239|ref|YP_001096725.1| - 2.4e-06 27.3 12.1 0.00027 20.9 2.5 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134045239|ref|YP_001096725.1| - 7.2e-06 26.5 12.8 7.2e-06 26.5 12.8 2.8 2 2 1 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045239|ref|YP_001096725.1| - 2.4e-05 24.4 14.4 2.4e-05 24.4 14.4 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134045239|ref|YP_001096725.1| - 5.6e-05 23.8 7.2 0.015 16.1 0.2 3.1 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|134045239|ref|YP_001096725.1| - 9.9e-05 22.4 12.9 9.9e-05 22.4 12.9 3.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045239|ref|YP_001096725.1| - 0.00023 22.0 11.2 0.0018 19.1 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|134045239|ref|YP_001096725.1| - 0.0042 17.5 3.4 0.0042 17.5 3.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|134045239|ref|YP_001096725.1| - 0.0058 17.1 16.2 0.15 12.6 2.1 3.4 3 0 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|134045239|ref|YP_001096725.1| - 0.056 14.0 2.1 0.056 14.0 2.1 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|134045239|ref|YP_001096725.1| - 0.85 10.5 18.7 0.9 10.4 5.0 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain HycI PF01750.18 gi|134045240|ref|YP_001096726.1| - 8.9e-31 106.4 2.1 1.1e-30 106.2 2.1 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease NiFeSe_Hases PF00374.19 gi|134045241|ref|YP_001096727.1| - 2.3e-28 99.4 4.6 2.6e-16 59.6 0.2 3.9 1 1 3 4 4 4 4 Nickel-dependent hydrogenase Beta-Casp PF10996.8 gi|134045242|ref|YP_001096728.1| - 1.6e-20 73.4 0.0 3.7e-20 72.3 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|134045242|ref|YP_001096728.1| - 1.1e-13 50.9 0.0 2.3e-13 49.9 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|134045242|ref|YP_001096728.1| - 1.3e-13 50.8 0.3 4.5e-13 49.1 0.1 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|134045242|ref|YP_001096728.1| - 2.4e-13 50.6 0.1 1.5e-12 47.9 0.1 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|134045242|ref|YP_001096728.1| - 2.8e-10 40.0 0.0 4.4e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|134045242|ref|YP_001096728.1| - 9e-06 25.7 0.1 2.3e-05 24.4 0.1 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lipl32 PF12103.8 gi|134045242|ref|YP_001096728.1| - 0.057 13.1 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Surface lipoprotein of Spirochaetales order Amidohydro_1 PF01979.20 gi|134045243|ref|YP_001096729.1| - 1.2e-40 139.9 0.0 1.5e-40 139.6 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|134045243|ref|YP_001096729.1| - 0.00049 19.7 0.0 0.033 13.7 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|134045243|ref|YP_001096729.1| - 0.19 11.0 0.0 0.31 10.3 0.0 1.3 1 0 0 1 1 1 0 Adenosine/AMP deaminase Thymidylat_synt PF00303.19 gi|134045244|ref|YP_001096730.1| - 7.5e-20 71.2 0.4 4e-19 68.8 0.3 1.7 1 1 1 2 2 2 1 Thymidylate synthase EGF_CA PF07645.15 gi|134045245|ref|YP_001096731.1| - 0.025 14.8 0.0 0.03 14.5 0.0 1.1 1 0 0 1 1 1 0 Calcium-binding EGF domain AHD PF17793.1 gi|134045245|ref|YP_001096731.1| - 0.088 12.6 0.0 0.11 12.3 0.0 1.4 1 1 0 1 1 1 0 ANC1 homology domain (AHD) DUF553 PF04473.12 gi|134045246|ref|YP_001096732.1| - 3.7e-39 133.7 0.8 8.1e-39 132.6 0.8 1.6 1 0 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.19 gi|134045246|ref|YP_001096732.1| - 0.0029 18.0 0.0 0.012 16.0 0.0 2.0 2 1 0 2 2 2 1 Transglutaminase-like superfamily PspC PF04024.12 gi|134045247|ref|YP_001096733.1| - 5.5e-23 80.5 2.8 6.4e-23 80.3 2.8 1.1 1 0 0 1 1 1 1 PspC domain GCD14 PF08704.10 gi|134045248|ref|YP_001096734.1| - 1.6e-27 96.8 0.1 3.4e-25 89.2 0.0 2.8 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|134045248|ref|YP_001096734.1| - 2e-06 27.7 0.6 0.051 13.4 0.0 2.4 1 1 1 2 2 2 2 Methyltransferase domain PCMT PF01135.19 gi|134045248|ref|YP_001096734.1| - 3.1e-06 27.1 0.1 5.9e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|134045248|ref|YP_001096734.1| - 0.0001 21.5 0.2 0.00015 21.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.18 gi|134045248|ref|YP_001096734.1| - 0.0019 17.6 0.1 0.045 13.1 0.0 2.1 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|134045248|ref|YP_001096734.1| - 0.014 16.1 0.0 0.15 12.8 0.0 2.4 1 1 2 3 3 3 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|134045248|ref|YP_001096734.1| - 0.029 15.4 0.0 0.12 13.5 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|134045248|ref|YP_001096734.1| - 0.059 12.8 0.1 0.23 10.9 0.1 2.1 1 1 0 1 1 1 0 Putative methyltransferase RNase_HII PF01351.18 gi|134045249|ref|YP_001096735.1| - 8.3e-54 182.4 1.3 9.8e-54 182.2 1.3 1.0 1 0 0 1 1 1 1 Ribonuclease HII MecA_N PF05223.11 gi|134045249|ref|YP_001096735.1| - 0.0082 16.4 4.2 0.23 11.7 0.3 2.4 2 0 0 2 2 2 2 NTF2-like N-terminal transpeptidase domain DUF1297 PF06973.12 gi|134045250|ref|YP_001096736.1| - 3.5e-83 277.8 0.0 4.7e-83 277.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|134045250|ref|YP_001096736.1| - 2.7e-47 159.7 0.0 3.8e-47 159.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) PGM_PMM_I PF02878.16 gi|134045251|ref|YP_001096737.1| - 3.2e-22 78.7 0.0 6.2e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|134045251|ref|YP_001096737.1| - 8.7e-21 74.5 0.0 3.7e-20 72.5 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|134045251|ref|YP_001096737.1| - 1.2e-17 64.2 0.0 2e-17 63.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|134045251|ref|YP_001096737.1| - 3.7e-12 46.3 0.0 1e-11 44.8 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Ribosomal_S10 PF00338.22 gi|134045252|ref|YP_001096738.1| - 8.6e-28 96.4 0.1 9.6e-28 96.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Mrx7 PF10906.8 gi|134045252|ref|YP_001096738.1| - 0.079 13.2 0.1 0.13 12.5 0.1 1.4 1 0 0 1 1 1 0 MIOREX complex component 7 PriA_C PF18074.1 gi|134045252|ref|YP_001096738.1| - 0.14 13.0 0.0 0.25 12.2 0.0 1.4 1 0 0 1 1 1 0 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|134045253|ref|YP_001096739.1| - 1.4e-50 171.6 0.0 1.6e-50 171.4 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|134045253|ref|YP_001096739.1| - 2.2e-36 124.5 0.4 1.1e-35 122.3 0.1 2.3 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|134045253|ref|YP_001096739.1| - 1.9e-16 60.2 1.8 8.7e-16 58.1 1.0 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|134045253|ref|YP_001096739.1| - 2.4e-07 30.6 1.2 6.6e-07 29.1 1.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.23 gi|134045253|ref|YP_001096739.1| - 1.3e-06 28.4 0.1 6.8e-06 26.2 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|134045253|ref|YP_001096739.1| - 0.002 17.6 1.6 0.011 15.3 0.3 2.6 3 1 0 3 3 3 1 Ferrous iron transport protein B PduV-EutP PF10662.9 gi|134045253|ref|YP_001096739.1| - 0.015 15.1 0.3 0.13 12.0 0.1 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Gtr1_RagA PF04670.12 gi|134045253|ref|YP_001096739.1| - 0.06 12.7 0.1 0.11 11.8 0.1 1.4 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region Ras PF00071.22 gi|134045253|ref|YP_001096739.1| - 0.11 12.1 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Ras family Dynamin_N PF00350.23 gi|134045253|ref|YP_001096739.1| - 0.15 12.1 0.0 12 5.9 0.0 2.4 2 0 0 2 2 2 0 Dynamin family GTP_EFTU PF00009.27 gi|134045254|ref|YP_001096740.1| - 1e-63 214.4 0.0 1.7e-63 213.7 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 gi|134045254|ref|YP_001096740.1| - 1.6e-26 92.1 0.0 8.8e-26 89.8 0.0 2.3 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_IV PF03764.18 gi|134045254|ref|YP_001096740.1| - 2e-23 82.5 0.3 6.1e-23 80.9 0.3 1.9 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|134045254|ref|YP_001096740.1| - 1e-21 76.8 0.6 2.4e-21 75.6 0.3 1.8 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|134045254|ref|YP_001096740.1| - 9e-13 48.4 0.0 3.5e-12 46.5 0.0 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 2 Ribosomal_S7 PF00177.21 gi|134045255|ref|YP_001096741.1| - 1.2e-36 125.6 4.6 1.5e-36 125.3 4.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.25 gi|134045256|ref|YP_001096742.1| - 1.9e-49 166.1 1.2 2.3e-49 165.8 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_5 PF13184.6 gi|134045257|ref|YP_001096743.1| - 9e-17 60.9 2.9 2.2e-16 59.7 0.3 2.3 2 0 0 2 2 2 1 NusA-like KH domain KH_2 PF07650.17 gi|134045257|ref|YP_001096743.1| - 3.4e-13 49.2 5.4 3.1e-11 42.9 0.4 2.4 1 1 1 2 2 2 2 KH domain KH_1 PF00013.29 gi|134045257|ref|YP_001096743.1| - 1.7e-06 27.8 4.0 0.0013 18.5 0.3 3.0 2 2 1 3 3 3 2 KH domain KH_4 PF13083.6 gi|134045257|ref|YP_001096743.1| - 0.0047 16.8 0.7 0.3 11.0 0.4 2.5 2 0 0 2 2 2 1 KH domain Ribosomal_L7Ae PF01248.26 gi|134045258|ref|YP_001096744.1| - 2.6e-23 81.6 0.1 2.9e-23 81.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family FKBP_C PF00254.28 gi|134045258|ref|YP_001096744.1| - 0.1 12.9 0.0 0.13 12.6 0.0 1.3 1 0 0 1 1 1 0 FKBP-type peptidyl-prolyl cis-trans isomerase DUF89 PF01937.19 gi|134045258|ref|YP_001096744.1| - 0.1 11.5 0.0 0.12 11.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF89 RNA_pol_Rpb1_5 PF04998.17 gi|134045259|ref|YP_001096745.1| - 3.6e-56 190.5 1.2 4.5e-56 190.2 1.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_1 PF04997.12 gi|134045260|ref|YP_001096746.1| - 1e-100 337.1 0.0 2e-100 336.1 0.0 1.5 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|134045260|ref|YP_001096746.1| - 9.7e-69 230.8 0.3 1.6e-68 230.2 0.3 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|134045260|ref|YP_001096746.1| - 7.3e-30 104.0 0.0 1.4e-29 103.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|134045260|ref|YP_001096746.1| - 1.3e-28 99.0 0.0 3.2e-28 97.8 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|134045260|ref|YP_001096746.1| - 4.9e-27 95.0 0.1 1.7e-26 93.3 0.1 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 5 MqsA_antitoxin PF15731.5 gi|134045260|ref|YP_001096746.1| - 0.056 13.5 1.7 6.5 6.9 0.0 3.4 3 1 1 4 4 4 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA TraB PF01963.17 gi|134045260|ref|YP_001096746.1| - 0.15 12.0 0.1 0.3 10.9 0.1 1.5 1 0 0 1 1 1 0 TraB family BING4CT PF08149.11 gi|134045260|ref|YP_001096746.1| - 0.16 11.8 0.2 2 8.3 0.0 2.8 4 0 0 4 4 4 0 BING4CT (NUC141) domain DUF758 PF05527.11 gi|134045260|ref|YP_001096746.1| - 0.17 11.9 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF758) zf-ribbon_3 PF13248.6 gi|134045260|ref|YP_001096746.1| - 0.4 10.2 9.6 2.7 7.5 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain RNA_pol_Rpb2_6 PF00562.28 gi|134045261|ref|YP_001096747.1| - 2.3e-126 422.0 0.0 2.8e-126 421.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|134045261|ref|YP_001096747.1| - 3.4e-28 97.9 0.0 8.3e-28 96.6 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|134045261|ref|YP_001096747.1| - 1.5e-21 76.5 0.0 2.9e-21 75.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|134045261|ref|YP_001096747.1| - 4.1e-11 43.3 5.0 1.5e-10 41.4 5.0 2.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 TF_Zn_Ribbon PF08271.12 gi|134045261|ref|YP_001096747.1| - 0.0042 16.6 2.7 0.043 13.3 2.6 2.4 1 1 1 2 2 2 2 TFIIB zinc-binding RNA_pol_Rpb2_45 PF10385.9 gi|134045261|ref|YP_001096747.1| - 0.013 15.7 0.6 0.057 13.7 0.5 2.1 2 0 0 2 2 2 0 RNA polymerase beta subunit external 1 domain Nudix_N_2 PF14803.6 gi|134045261|ref|YP_001096747.1| - 0.03 14.3 0.4 8.9 6.3 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS91 PF14319.6 gi|134045261|ref|YP_001096747.1| - 0.12 12.5 0.3 0.23 11.5 0.3 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain Sec61_beta PF03911.16 gi|134045261|ref|YP_001096747.1| - 0.14 12.2 0.1 0.38 10.8 0.1 1.8 1 0 0 1 1 1 0 Sec61beta family DZR PF12773.7 gi|134045261|ref|YP_001096747.1| - 0.15 12.1 0.3 0.29 11.2 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ead_Ea22 PF13935.6 gi|134045261|ref|YP_001096747.1| - 0.15 12.7 0.2 0.45 11.2 0.2 1.8 2 0 0 2 2 2 0 Ead/Ea22-like protein zf-ribbon_3 PF13248.6 gi|134045261|ref|YP_001096747.1| - 0.18 11.2 2.0 1.9 8.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|134045261|ref|YP_001096747.1| - 0.27 11.4 1.4 0.63 10.2 1.4 1.6 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|134045261|ref|YP_001096747.1| - 0.37 10.6 2.5 2.1 8.1 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|134045261|ref|YP_001096747.1| - 0.55 10.4 2.0 1.3 9.2 1.2 2.0 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_Rpb2_1 PF04563.15 gi|134045262|ref|YP_001096748.1| - 7e-54 182.4 0.2 8.4e-54 182.2 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|134045262|ref|YP_001096748.1| - 7.9e-29 100.6 0.0 1.2e-28 100.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|134045262|ref|YP_001096748.1| - 9.6e-28 96.2 0.0 1.9e-27 95.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.19 gi|134045263|ref|YP_001096749.1| - 1.5e-26 92.0 0.1 1.6e-26 91.9 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain MinC_N PF05209.13 gi|134045263|ref|YP_001096749.1| - 0.11 12.4 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Septum formation inhibitor MinC, N-terminal domain HcyBio PF01837.16 gi|134045264|ref|YP_001096750.1| - 1.4e-142 474.7 1.4 1.7e-142 474.4 1.4 1.1 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|134045264|ref|YP_001096750.1| - 2.7e-26 91.8 4.5 5.5e-14 52.3 0.2 3.2 3 0 0 3 3 3 2 CBS domain PRC PF05239.16 gi|134045264|ref|YP_001096750.1| - 0.035 14.2 0.0 0.64 10.1 0.0 2.6 2 0 0 2 2 2 0 PRC-barrel domain GCV_H PF01597.19 gi|134045264|ref|YP_001096750.1| - 0.064 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Glycine cleavage H-protein Ribosomal_L9_C PF03948.14 gi|134045264|ref|YP_001096750.1| - 0.073 13.5 0.9 7.2 7.1 0.0 3.4 3 0 0 3 3 3 0 Ribosomal protein L9, C-terminal domain Fer4 PF00037.27 gi|134045265|ref|YP_001096751.1| - 5.5e-18 64.0 17.7 7.3e-09 35.1 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134045265|ref|YP_001096751.1| - 2.5e-12 46.3 17.5 4.4e-07 29.7 5.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134045265|ref|YP_001096751.1| - 6.4e-12 45.4 22.0 5.4e-08 32.9 12.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134045265|ref|YP_001096751.1| - 7.4e-12 45.2 13.6 1.1e-11 44.7 13.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045265|ref|YP_001096751.1| - 1.5e-11 44.7 10.8 4.2e-11 43.3 11.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045265|ref|YP_001096751.1| - 5.9e-11 42.3 8.9 2.9e-05 24.1 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045265|ref|YP_001096751.1| - 8.8e-10 39.4 10.1 6.6e-05 23.8 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|134045265|ref|YP_001096751.1| - 2e-09 37.0 10.8 0.00024 21.0 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain NIL PF09383.10 gi|134045265|ref|YP_001096751.1| - 1.2e-08 34.7 0.0 1.8e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 NIL domain Fer4_4 PF12800.7 gi|134045265|ref|YP_001096751.1| - 1.7e-06 28.0 15.4 0.0034 17.8 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|134045265|ref|YP_001096751.1| - 6.6e-05 23.4 15.9 0.0091 16.5 2.8 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|134045265|ref|YP_001096751.1| - 7e-05 23.2 13.7 0.044 14.2 13.8 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|134045265|ref|YP_001096751.1| - 0.00027 21.7 20.7 0.061 14.3 5.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|134045265|ref|YP_001096751.1| - 0.00045 20.4 13.1 0.015 15.5 2.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045265|ref|YP_001096751.1| - 0.00078 19.9 12.4 0.04 14.5 1.5 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain ALS_ss_C PF10369.9 gi|134045265|ref|YP_001096751.1| - 0.0018 18.4 0.1 0.0029 17.8 0.1 1.3 1 0 0 1 1 1 1 Small subunit of acetolactate synthase Fer4_22 PF17179.4 gi|134045265|ref|YP_001096751.1| - 0.01 16.7 11.2 0.25 12.2 1.4 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134045265|ref|YP_001096751.1| - 0.067 13.9 19.1 0.17 12.6 4.3 3.5 2 2 1 3 3 3 0 4Fe-4S single cluster domain ThiS PF02597.20 gi|134045266|ref|YP_001096752.1| - 2.6e-06 28.0 0.0 3.1e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 ThiS family RL10P_insert PF17777.1 gi|134045266|ref|YP_001096752.1| - 0.022 14.7 0.2 0.097 12.7 0.0 1.8 1 1 1 2 2 2 0 Insertion domain in 60S ribosomal protein L10P ATP_bind_3 PF01171.20 gi|134045267|ref|YP_001096753.1| - 2.4e-13 50.2 0.0 5.3e-13 49.1 0.0 1.5 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|134045267|ref|YP_001096753.1| - 1.2e-07 30.9 0.0 1.5e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|134045267|ref|YP_001096753.1| - 3e-06 26.6 0.0 5.1e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 NAD synthase RecR PF02132.15 gi|134045267|ref|YP_001096753.1| - 0.0036 16.8 0.8 0.0036 16.8 0.8 4.0 5 0 0 5 5 5 1 RecR protein Trans_coact PF16805.5 gi|134045267|ref|YP_001096753.1| - 0.027 14.6 0.1 0.11 12.7 0.1 2.0 2 0 0 2 2 2 0 Phage late-transcription coactivator zn-ribbon_14 PF16503.5 gi|134045267|ref|YP_001096753.1| - 0.032 13.8 2.6 0.032 13.8 2.6 4.2 4 1 0 4 4 4 0 Zinc-ribbon ETC_C1_NDUFA4 PF04800.12 gi|134045267|ref|YP_001096753.1| - 0.12 12.6 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 ETC complex I subunit conserved region DZR PF12773.7 gi|134045267|ref|YP_001096753.1| - 8.6 6.5 8.2 11 6.2 1.8 3.2 3 0 0 3 3 3 0 Double zinc ribbon Hexapep PF00132.24 gi|134045268|ref|YP_001096754.1| - 1.3e-12 46.9 5.0 9.1e-10 37.9 3.9 3.3 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|134045268|ref|YP_001096754.1| - 1.3e-08 34.4 3.9 6.7e-08 32.1 1.9 2.4 2 0 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase ThiI PF02568.14 gi|134045269|ref|YP_001096755.1| - 2.9e-69 232.6 0.0 5.2e-69 231.8 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|134045269|ref|YP_001096755.1| - 2.6e-21 76.2 3.2 2.6e-21 76.2 3.2 2.4 4 0 0 4 4 4 1 THUMP domain QueC PF06508.13 gi|134045269|ref|YP_001096755.1| - 1.5e-05 24.6 0.3 0.00034 20.2 0.3 2.8 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|134045269|ref|YP_001096755.1| - 4e-05 22.6 0.0 9.4e-05 21.4 0.0 1.7 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|134045270|ref|YP_001096756.1| - 7.3e-19 68.2 0.0 2.6e-18 66.4 0.0 1.8 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|134045270|ref|YP_001096756.1| - 4.1e-06 25.8 0.0 5.9e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Ribosomal_L36 PF00444.18 gi|134045270|ref|YP_001096756.1| - 0.025 14.8 1.1 0.76 10.0 0.1 3.1 3 0 0 3 3 3 0 Ribosomal protein L36 PAPS_reduct PF01507.19 gi|134045270|ref|YP_001096756.1| - 0.081 13.0 0.0 0.87 9.6 0.0 2.4 2 1 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family Thi4 PF01946.17 gi|134045271|ref|YP_001096757.1| - 1.1e-81 273.5 1.6 1.6e-81 273.0 1.6 1.2 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|134045271|ref|YP_001096757.1| - 2.2e-10 40.2 5.0 2.3e-06 27.0 0.4 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.24 gi|134045271|ref|YP_001096757.1| - 2.3e-10 40.6 4.3 2.9e-07 30.4 1.8 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|134045271|ref|YP_001096757.1| - 2e-09 37.2 1.6 8.1e-09 35.2 0.8 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|134045271|ref|YP_001096757.1| - 2.4e-09 37.1 1.1 3.6e-09 36.5 1.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|134045271|ref|YP_001096757.1| - 1.1e-08 35.1 0.2 4.5e-08 33.2 0.3 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|134045271|ref|YP_001096757.1| - 1.4e-07 31.1 1.4 6.8e-07 28.8 1.2 1.9 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|134045271|ref|YP_001096757.1| - 1.4e-06 27.3 0.2 1.4e-06 27.3 0.2 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|134045271|ref|YP_001096757.1| - 2.1e-05 23.9 0.2 0.00029 20.2 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|134045271|ref|YP_001096757.1| - 0.0003 21.3 1.0 0.0017 18.8 0.1 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|134045271|ref|YP_001096757.1| - 0.00054 19.1 1.6 0.0007 18.8 0.4 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|134045271|ref|YP_001096757.1| - 0.0026 17.1 0.2 0.0062 15.9 0.0 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|134045271|ref|YP_001096757.1| - 0.0035 16.4 0.1 0.024 13.7 0.1 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|134045271|ref|YP_001096757.1| - 0.0084 16.1 0.2 0.016 15.2 0.2 1.5 1 0 0 1 1 1 1 FAD-NAD(P)-binding Shikimate_DH PF01488.20 gi|134045271|ref|YP_001096757.1| - 0.01 15.9 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase K_oxygenase PF13434.6 gi|134045271|ref|YP_001096757.1| - 0.012 14.8 0.0 0.017 14.2 0.0 1.1 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|134045271|ref|YP_001096757.1| - 0.014 14.3 0.3 0.095 11.5 0.1 1.9 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.21 gi|134045271|ref|YP_001096757.1| - 0.065 12.6 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 ThiF family Acetyltransf_1 PF00583.25 gi|134045272|ref|YP_001096758.1| - 1.4e-16 60.7 0.1 1.8e-16 60.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|134045272|ref|YP_001096758.1| - 1.2e-11 44.6 0.1 1.4e-11 44.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|134045272|ref|YP_001096758.1| - 1.4e-10 41.5 0.1 2e-10 41.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|134045272|ref|YP_001096758.1| - 0.0021 17.7 0.0 0.003 17.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|134045272|ref|YP_001096758.1| - 0.0029 18.3 0.1 0.0068 17.1 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|134045272|ref|YP_001096758.1| - 0.027 14.4 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_6 PF13480.7 gi|134045272|ref|YP_001096758.1| - 0.054 13.6 0.0 0.077 13.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Radical_SAM PF04055.21 gi|134045273|ref|YP_001096759.1| - 3.8e-24 86.0 0.1 7e-24 85.1 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|134045273|ref|YP_001096759.1| - 6.2e-08 32.7 0.0 1.6e-07 31.3 0.0 1.7 2 0 0 2 2 2 1 B12 binding domain MGS PF02142.22 gi|134045273|ref|YP_001096759.1| - 0.23 11.7 1.5 2.9 8.1 0.0 2.9 3 0 0 3 3 3 0 MGS-like domain NAD_synthase PF02540.17 gi|134045274|ref|YP_001096760.1| - 1.4e-84 283.0 0.0 1.8e-84 282.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|134045274|ref|YP_001096760.1| - 2.6e-07 29.8 0.0 0.00015 20.7 0.0 2.9 3 0 0 3 3 3 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|134045274|ref|YP_001096760.1| - 1.2e-05 25.2 0.0 1.7e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase HTH_23 PF13384.6 gi|134045274|ref|YP_001096760.1| - 0.03 14.1 0.0 0.67 9.8 0.0 2.4 1 1 1 2 2 2 0 Homeodomain-like domain YihI PF04220.12 gi|134045274|ref|YP_001096760.1| - 0.089 12.5 0.9 0.15 11.8 0.9 1.3 1 0 0 1 1 1 0 Der GTPase activator (YihI) CATSPERG PF15064.6 gi|134045274|ref|YP_001096760.1| - 0.11 10.3 0.0 0.14 9.9 0.0 1.1 1 0 0 1 1 1 0 Cation channel sperm-associated protein subunit gamma Tubulin PF00091.25 gi|134045274|ref|YP_001096760.1| - 0.12 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Tubulin/FtsZ family, GTPase domain QueC PF06508.13 gi|134045274|ref|YP_001096760.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC RibD_C PF01872.17 gi|134045275|ref|YP_001096761.1| - 6.1e-61 205.7 0.0 8.7e-61 205.2 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain Toprim_2 PF13155.6 gi|134045275|ref|YP_001096761.1| - 1.7e-08 34.7 0.0 3.5e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 Toprim-like Toprim_4 PF13662.6 gi|134045275|ref|YP_001096761.1| - 1.1e-06 29.0 0.0 3e-06 27.6 0.0 1.8 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.22 gi|134045275|ref|YP_001096761.1| - 2.9e-06 27.4 0.2 9.4e-05 22.6 0.0 2.6 2 1 0 2 2 2 1 Toprim domain Toprim_3 PF13362.6 gi|134045275|ref|YP_001096761.1| - 0.00052 20.3 0.0 0.0011 19.3 0.0 1.5 1 0 0 1 1 1 1 Toprim domain Radical_SAM PF04055.21 gi|134045275|ref|YP_001096761.1| - 0.031 14.7 0.1 0.071 13.5 0.1 1.7 1 0 0 1 1 1 0 Radical SAM superfamily Hydrolase PF00702.26 gi|134045275|ref|YP_001096761.1| - 0.079 13.2 0.0 0.15 12.3 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase MatK_N PF01824.18 gi|134045275|ref|YP_001096761.1| - 0.14 11.8 0.1 0.21 11.2 0.1 1.2 1 0 0 1 1 1 0 MatK/TrnK amino terminal region CBFD_NFYB_HMF PF00808.23 gi|134045276|ref|YP_001096762.1| - 9.2e-21 73.9 1.7 1e-20 73.8 1.7 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|134045276|ref|YP_001096762.1| - 1.3e-10 41.7 0.4 1.5e-10 41.6 0.4 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-S PF15630.6 gi|134045276|ref|YP_001096762.1| - 8.4e-07 29.3 0.1 8.9e-07 29.2 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein CENP-T_C PF15511.6 gi|134045276|ref|YP_001096762.1| - 2e-06 27.8 0.2 2.3e-06 27.7 0.2 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TFIID-31kDa PF02291.15 gi|134045276|ref|YP_001096762.1| - 6.1e-06 26.3 0.1 6.8e-06 26.2 0.1 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TAF PF02969.17 gi|134045276|ref|YP_001096762.1| - 4.4e-05 23.6 2.0 4.6e-05 23.5 2.0 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID_20kDa PF03847.13 gi|134045276|ref|YP_001096762.1| - 0.0014 19.1 0.3 0.0015 19.0 0.3 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A DUF1931 PF09123.11 gi|134045276|ref|YP_001096762.1| - 0.026 14.6 0.6 0.028 14.6 0.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) TFIID-18kDa PF02269.16 gi|134045276|ref|YP_001096762.1| - 0.03 14.3 0.1 0.031 14.3 0.1 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit Transketolase_C PF02780.20 gi|134045277|ref|YP_001096763.1| - 0.028 14.3 0.0 0.075 12.9 0.0 1.6 2 0 0 2 2 2 0 Transketolase, C-terminal domain ScsC_N PF18312.1 gi|134045277|ref|YP_001096763.1| - 0.29 11.0 2.0 1.5 8.7 0.3 2.6 3 0 0 3 3 3 0 Copper resistance protein ScsC N-terminal domain Prenyltransf PF01255.19 gi|134045278|ref|YP_001096764.1| - 3.9e-79 265.3 0.0 4.6e-79 265.1 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase PrcB_C PF14343.6 gi|134045279|ref|YP_001096765.1| - 0.00027 21.0 2.0 0.00046 20.3 2.0 1.4 1 0 0 1 1 1 1 PrcB C-terminal Lactamase_B_2 PF12706.7 gi|134045280|ref|YP_001096766.1| - 1.1e-14 54.5 0.0 1.4e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|134045280|ref|YP_001096766.1| - 1.6e-05 24.9 0.0 0.00033 20.6 0.0 2.2 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|134045280|ref|YP_001096766.1| - 3e-05 24.1 0.1 5.2e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF3310 PF11753.8 gi|134045280|ref|YP_001096766.1| - 0.011 15.9 1.3 0.13 12.5 0.1 2.8 3 0 0 3 3 3 0 Protein of unknwon function (DUF3310) Sh_2 PF17512.2 gi|134045280|ref|YP_001096766.1| - 0.013 15.3 0.3 0.02 14.7 0.3 1.2 1 0 0 1 1 1 0 Metapneumovirus Small hydrophobic protein PIN_9 PF18477.1 gi|134045281|ref|YP_001096767.1| - 1.1e-22 80.5 0.0 1.2e-22 80.4 0.0 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|134045281|ref|YP_001096767.1| - 9.5e-09 35.6 0.0 1.2e-08 35.2 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN PF01850.21 gi|134045281|ref|YP_001096767.1| - 6.4e-06 26.7 0.2 0.0022 18.5 0.2 2.1 1 1 0 1 1 1 1 PIN domain PIN_4 PF13638.6 gi|134045281|ref|YP_001096767.1| - 9.8e-05 22.6 1.2 0.015 15.6 0.1 2.1 1 1 1 2 2 2 2 PIN domain PaaA_PaaC PF05138.12 gi|134045281|ref|YP_001096767.1| - 0.1 11.7 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 Phenylacetic acid catabolic protein AAA_23 PF13476.6 gi|134045282|ref|YP_001096768.1| - 1.1e-24 88.0 19.7 1.1e-24 88.0 19.7 8.1 1 1 6 7 7 7 1 AAA domain AAA_29 PF13555.6 gi|134045282|ref|YP_001096768.1| - 6.2e-07 29.1 0.0 1.2e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|134045282|ref|YP_001096768.1| - 6.5e-07 29.4 65.1 6.5e-07 29.4 65.1 4.5 1 1 3 4 4 4 1 AAA ATPase domain Rad50_zn_hook PF04423.14 gi|134045282|ref|YP_001096768.1| - 1.4e-06 28.0 5.9 1.4e-06 28.0 5.9 10.3 12 2 1 13 13 13 1 Rad50 zinc hook motif SbcCD_C PF13558.6 gi|134045282|ref|YP_001096768.1| - 4.1e-06 27.0 0.0 8.3e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|134045282|ref|YP_001096768.1| - 0.00012 21.6 78.6 0.0014 18.1 78.6 3.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|134045282|ref|YP_001096768.1| - 0.0041 16.7 0.2 0.0041 16.7 0.2 3.4 5 1 1 6 6 6 1 AAA domain Occludin_ELL PF07303.13 gi|134045282|ref|YP_001096768.1| - 0.024 15.4 1.7 0.024 15.4 1.7 9.7 1 1 8 10 10 10 0 Occludin homology domain MukB PF04310.12 gi|134045282|ref|YP_001096768.1| - 0.54 10.0 0.0 0.54 10.0 0.0 4.7 5 0 0 5 5 5 0 MukB N-terminal AAA_22 PF13401.6 gi|134045282|ref|YP_001096768.1| - 0.58 10.4 8.5 4 7.7 0.0 4.8 4 2 0 4 4 4 0 AAA domain Metallophos PF00149.28 gi|134045283|ref|YP_001096769.1| - 1.6e-14 54.9 0.9 1.6e-14 54.9 0.9 2.0 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|134045283|ref|YP_001096769.1| - 7.7e-11 42.4 0.0 1.5e-10 41.6 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Thioredoxin_8 PF13905.6 gi|134045284|ref|YP_001096770.1| - 0.0012 19.2 1.4 0.0075 16.6 0.7 2.1 1 1 1 2 2 2 1 Thioredoxin-like UPF0122 PF04297.14 gi|134045284|ref|YP_001096770.1| - 0.021 15.0 1.4 0.039 14.2 1.4 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like COG2 PF06148.11 gi|134045284|ref|YP_001096770.1| - 0.022 14.8 0.4 0.038 14.1 0.3 1.4 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 RmuC PF02646.16 gi|134045284|ref|YP_001096770.1| - 0.046 12.9 0.3 0.11 11.6 0.4 1.6 1 1 1 2 2 2 0 RmuC family INTS5_C PF14838.6 gi|134045284|ref|YP_001096770.1| - 0.051 12.2 0.0 0.057 12.1 0.0 1.1 1 0 0 1 1 1 0 Integrator complex subunit 5 C-terminus PRC2_HTH_1 PF18118.1 gi|134045284|ref|YP_001096770.1| - 0.069 14.0 0.7 0.28 12.0 0.3 2.1 1 1 1 2 2 2 0 Polycomb repressive complex 2 tri-helical domain Phage_integrase PF00589.22 gi|134045285|ref|YP_001096771.1| - 6.7e-36 123.7 0.2 9.9e-36 123.1 0.2 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|134045285|ref|YP_001096771.1| - 6.6e-07 29.7 0.4 2.3e-06 28.0 0.4 1.9 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|134045285|ref|YP_001096771.1| - 0.00016 21.9 4.0 0.00036 20.8 2.1 2.6 2 1 0 2 2 2 1 Phage integrase SAM-like domain HxlR PF01638.17 gi|134045286|ref|YP_001096772.1| - 4.3e-05 23.3 0.5 5.9e-05 22.9 0.5 1.3 1 1 0 1 1 1 1 HxlR-like helix-turn-helix TFIIE_alpha PF02002.17 gi|134045286|ref|YP_001096772.1| - 0.0035 17.2 3.8 0.0062 16.4 3.9 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit DUF4423 PF14394.6 gi|134045286|ref|YP_001096772.1| - 0.0039 16.9 0.3 0.0047 16.6 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) B-block_TFIIIC PF04182.12 gi|134045286|ref|YP_001096772.1| - 0.015 15.5 1.6 0.033 14.3 1.3 1.7 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.6 gi|134045286|ref|YP_001096772.1| - 0.047 13.9 0.4 0.073 13.3 0.4 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|134045286|ref|YP_001096772.1| - 0.46 10.5 6.6 2.3 8.3 6.3 2.0 1 1 0 1 1 1 0 Winged helix-turn-helix DUF4352 PF11611.8 gi|134045287|ref|YP_001096773.1| - 8.6e-14 51.9 0.7 1.7e-13 50.9 0.7 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4352) DUF1647 PF07801.11 gi|134045287|ref|YP_001096773.1| - 0.18 11.5 5.4 0.56 9.9 5.4 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1647) HEPN_Apea PF18739.1 gi|134045288|ref|YP_001096774.1| - 1.4e-05 25.4 0.3 1.4e-05 25.4 0.3 3.8 2 2 1 3 3 3 1 Apea-like HEPN HTH_5 PF01022.20 gi|134045289|ref|YP_001096775.1| - 7.8e-07 28.9 1.0 1.2e-06 28.3 0.5 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|134045289|ref|YP_001096775.1| - 2.2e-05 24.3 0.0 3.1e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|134045289|ref|YP_001096775.1| - 3.8e-05 23.8 0.1 6.1e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|134045289|ref|YP_001096775.1| - 5.9e-05 23.0 0.0 7.4e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.14 gi|134045289|ref|YP_001096775.1| - 8.7e-05 22.4 0.3 8.7e-05 22.4 0.3 1.7 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|134045289|ref|YP_001096775.1| - 0.0002 21.2 0.1 0.00036 20.4 0.1 1.4 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|134045289|ref|YP_001096775.1| - 0.00036 20.3 4.1 0.00049 19.9 4.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.10 gi|134045289|ref|YP_001096775.1| - 0.00038 20.2 0.0 0.00054 19.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|134045289|ref|YP_001096775.1| - 0.0024 17.7 0.1 0.004 17.0 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|134045289|ref|YP_001096775.1| - 0.0034 17.2 0.2 0.0044 16.8 0.2 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Replic_Relax PF13814.6 gi|134045289|ref|YP_001096775.1| - 0.015 15.4 0.0 0.017 15.2 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation RTP PF02334.16 gi|134045289|ref|YP_001096775.1| - 0.05 14.2 1.7 0.067 13.8 1.7 1.3 1 1 0 1 1 1 0 Replication terminator protein DUF2250 PF10007.9 gi|134045289|ref|YP_001096775.1| - 0.08 13.1 3.2 0.51 10.5 1.0 2.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Apis_Csd PF11671.8 gi|134045289|ref|YP_001096775.1| - 7.4 6.6 9.3 29 4.6 0.1 2.1 1 1 1 2 2 2 0 Complementary sex determiner protein DUF2080 PF09853.9 gi|134045290|ref|YP_001096776.1| - 2.2e-08 33.7 1.6 2.4e-08 33.6 1.6 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) RecR PF02132.15 gi|134045293|ref|YP_001096779.1| - 0.026 14.1 0.2 0.45 10.1 0.0 2.6 2 0 0 2 2 2 0 RecR protein DUF2433 PF10360.9 gi|134045293|ref|YP_001096779.1| - 0.039 14.1 0.2 8.3 6.5 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2433) zf-RING_5 PF14634.6 gi|134045293|ref|YP_001096779.1| - 0.066 13.2 3.9 1.1 9.3 0.9 2.4 2 0 0 2 2 2 0 zinc-RING finger domain FYVE_2 PF02318.16 gi|134045293|ref|YP_001096779.1| - 0.091 13.0 0.3 0.091 13.0 0.3 2.3 3 0 0 3 3 3 0 FYVE-type zinc finger zf-C3HC4_3 PF13920.6 gi|134045293|ref|YP_001096779.1| - 0.32 10.9 2.1 0.73 9.7 0.5 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Auto_anti-p27 PF06677.12 gi|134045293|ref|YP_001096779.1| - 0.35 11.0 3.1 0.74 10.0 3.1 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Glyco_hydro_4 PF02056.16 gi|134045295|ref|YP_001096781.1| - 0.07 12.7 0.1 0.078 12.5 0.1 1.1 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase Zot PF05707.12 gi|134045298|ref|YP_001096784.1| - 0.025 14.2 0.1 0.062 12.9 0.0 1.7 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) AAA PF00004.29 gi|134045298|ref|YP_001096784.1| - 0.039 14.4 0.2 0.059 13.8 0.2 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Methyltransf_10 PF05971.12 gi|134045299|ref|YP_001096785.1| - 1.1e-14 54.5 0.1 1.5e-14 54.1 0.1 1.1 1 0 0 1 1 1 1 RNA methyltransferase MTS PF05175.14 gi|134045299|ref|YP_001096785.1| - 4.9e-10 39.2 0.0 6.2e-09 35.6 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain PrmA PF06325.13 gi|134045299|ref|YP_001096785.1| - 7.5e-09 35.4 0.1 1.1e-08 34.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|134045299|ref|YP_001096785.1| - 2.2e-08 34.7 0.0 3.9e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|134045299|ref|YP_001096785.1| - 1.6e-07 31.2 0.0 3.7e-07 30.0 0.0 1.6 2 0 0 2 2 2 1 Lysine methyltransferase Methyltransf_31 PF13847.6 gi|134045299|ref|YP_001096785.1| - 3.1e-07 30.3 0.0 4.7e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|134045299|ref|YP_001096785.1| - 6e-06 26.2 0.0 1.6e-05 24.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|134045299|ref|YP_001096785.1| - 1e-05 26.1 0.0 4e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|134045299|ref|YP_001096785.1| - 0.0003 20.0 0.1 0.00057 19.1 0.1 1.4 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.7 gi|134045299|ref|YP_001096785.1| - 0.00034 20.6 0.1 0.00065 19.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|134045299|ref|YP_001096785.1| - 0.0059 16.4 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF2393 PF09624.10 gi|134045299|ref|YP_001096785.1| - 0.011 15.8 0.5 0.021 14.8 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) Methyltransf_12 PF08242.12 gi|134045299|ref|YP_001096785.1| - 0.014 16.2 0.0 0.026 15.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|134045299|ref|YP_001096785.1| - 0.023 14.3 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|134045299|ref|YP_001096785.1| - 0.03 14.0 0.0 0.078 12.7 0.0 1.6 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 RrnaAD PF00398.20 gi|134045299|ref|YP_001096785.1| - 0.076 12.1 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.10 gi|134045299|ref|YP_001096785.1| - 0.1 12.2 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.6 gi|134045299|ref|YP_001096785.1| - 0.18 12.9 0.0 0.31 12.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain HycI PF01750.18 gi|134045301|ref|YP_001096787.1| - 8.2e-33 113.0 0.9 9.5e-33 112.8 0.9 1.0 1 0 0 1 1 1 1 Hydrogenase maturation protease GTP_EFTU PF00009.27 gi|134045302|ref|YP_001096788.1| - 4.3e-38 130.8 0.7 7.2e-38 130.1 0.7 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|134045302|ref|YP_001096788.1| - 1.5e-12 47.7 8.8 3.8e-12 46.4 1.8 3.7 4 0 0 4 4 4 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|134045302|ref|YP_001096788.1| - 1.2e-08 35.0 0.1 2.7e-08 33.9 0.1 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|134045302|ref|YP_001096788.1| - 6e-05 22.6 0.1 0.00066 19.2 0.1 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B MeaB PF03308.16 gi|134045302|ref|YP_001096788.1| - 6.1e-05 22.1 1.6 7.8e-05 21.8 0.1 1.9 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1_Xtn PF16897.5 gi|134045302|ref|YP_001096788.1| - 0.00049 20.1 0.1 0.0024 17.9 0.1 2.2 1 1 0 1 1 1 1 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|134045302|ref|YP_001096788.1| - 0.00067 19.4 1.1 0.0092 15.7 1.1 2.4 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|134045302|ref|YP_001096788.1| - 0.0007 19.5 1.0 0.0079 16.1 0.2 2.2 1 1 1 2 2 2 1 RsgA GTPase RIBIOP_C PF04950.12 gi|134045302|ref|YP_001096788.1| - 0.0068 15.9 0.1 0.014 14.9 0.1 1.5 1 0 0 1 1 1 1 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal GTP_EFTU_D4 PF14578.6 gi|134045302|ref|YP_001096788.1| - 0.0071 16.2 2.5 0.0094 15.8 1.1 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 SRPRB PF09439.10 gi|134045302|ref|YP_001096788.1| - 0.0072 15.8 0.1 0.056 12.9 0.0 2.1 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|134045302|ref|YP_001096788.1| - 0.013 14.8 0.3 0.3 10.3 0.0 2.2 2 0 0 2 2 2 0 Septin AAA_13 PF13166.6 gi|134045302|ref|YP_001096788.1| - 0.031 12.9 0.0 0.05 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain MnmE_helical PF12631.7 gi|134045302|ref|YP_001096788.1| - 0.042 14.0 0.0 0.075 13.2 0.0 1.4 1 0 0 1 1 1 0 MnmE helical domain Antimicrobial_9 PF08104.11 gi|134045302|ref|YP_001096788.1| - 0.64 10.1 5.8 3.8 7.6 1.1 2.7 2 0 0 2 2 2 0 Ponericin L family GHMP_kinases_N PF00288.26 gi|134045303|ref|YP_001096789.1| - 4.2e-15 55.7 0.1 4.2e-15 55.7 0.1 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|134045303|ref|YP_001096789.1| - 2.1e-10 40.8 0.1 4.5e-10 39.8 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal DYW_deaminase PF14432.6 gi|134045303|ref|YP_001096789.1| - 0.072 13.0 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 DYW family of nucleic acid deaminases GalKase_gal_bdg PF10509.9 gi|134045303|ref|YP_001096789.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Galactokinase galactose-binding signature Syntaxin_2 PF14523.6 gi|134045303|ref|YP_001096789.1| - 0.12 12.8 1.1 0.4 11.1 0.2 2.2 2 0 0 2 2 2 0 Syntaxin-like protein MMR_HSR1 PF01926.23 gi|134045304|ref|YP_001096790.1| - 5.9e-19 68.2 2.2 4.4e-15 55.8 0.0 2.8 3 0 0 3 3 3 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|134045304|ref|YP_001096790.1| - 3.9e-14 52.5 1.6 4.9e-09 35.9 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|134045304|ref|YP_001096790.1| - 5.7e-09 36.1 0.5 2e-08 34.3 0.5 1.9 1 1 0 1 1 1 1 RsgA GTPase Dynamin_N PF00350.23 gi|134045304|ref|YP_001096790.1| - 4.8e-08 33.2 5.8 0.038 14.1 0.2 3.5 2 1 1 3 3 3 3 Dynamin family GTP_EFTU PF00009.27 gi|134045304|ref|YP_001096790.1| - 4.8e-06 26.3 1.9 6.7e-05 22.5 0.1 3.0 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|134045304|ref|YP_001096790.1| - 0.0009 19.2 2.3 0.0009 19.2 2.3 2.2 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain Roc PF08477.13 gi|134045304|ref|YP_001096790.1| - 0.0015 18.7 4.5 0.84 9.9 0.1 3.7 3 1 1 4 4 4 2 Ras of Complex, Roc, domain of DAPkinase AIG1 PF04548.16 gi|134045304|ref|YP_001096790.1| - 0.0034 16.7 2.2 0.017 14.4 0.0 2.7 3 1 0 3 3 3 1 AIG1 family cobW PF02492.19 gi|134045304|ref|YP_001096790.1| - 0.0039 16.8 0.7 0.26 10.9 0.1 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|134045304|ref|YP_001096790.1| - 0.035 13.1 0.8 0.59 9.1 0.1 2.5 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|134045304|ref|YP_001096790.1| - 0.19 12.3 2.3 0.78 10.3 0.0 2.7 3 0 0 3 3 3 0 AAA domain Rad10 PF03834.14 gi|134045304|ref|YP_001096790.1| - 0.22 11.5 2.0 0.55 10.3 0.4 2.2 2 0 0 2 2 2 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) ABC_tran PF00005.27 gi|134045304|ref|YP_001096790.1| - 0.81 10.2 6.0 4.1 7.9 4.8 2.5 1 1 1 2 2 2 0 ABC transporter Chorismate_synt PF01264.21 gi|134045305|ref|YP_001096791.1| - 8.1e-133 442.2 0.0 9.1e-133 442.0 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Pyr_redox_2 PF07992.14 gi|134045306|ref|YP_001096792.1| - 1.8e-26 93.0 0.2 1.6e-24 86.7 0.0 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|134045306|ref|YP_001096792.1| - 1.9e-16 60.4 1.7 1.4e-09 38.4 0.0 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|134045306|ref|YP_001096792.1| - 6.5e-11 42.0 0.2 0.00024 20.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|134045306|ref|YP_001096792.1| - 2.6e-09 37.2 2.0 1e-08 35.3 0.1 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|134045306|ref|YP_001096792.1| - 2.7e-07 31.0 0.0 0.00085 19.7 0.0 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|134045306|ref|YP_001096792.1| - 3.8e-07 30.2 0.0 0.03 14.2 0.0 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|134045306|ref|YP_001096792.1| - 2.3e-06 26.9 0.0 8.2e-06 25.1 0.0 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|134045306|ref|YP_001096792.1| - 2.5e-05 23.2 0.1 7e-05 21.7 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|134045306|ref|YP_001096792.1| - 4.3e-05 23.3 1.6 8.5e-05 22.3 0.2 2.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|134045306|ref|YP_001096792.1| - 0.0001 21.7 0.0 0.025 13.9 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|134045306|ref|YP_001096792.1| - 0.00026 20.4 0.0 0.32 10.3 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|134045306|ref|YP_001096792.1| - 0.00031 20.1 0.2 0.00098 18.4 0.0 1.9 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|134045306|ref|YP_001096792.1| - 0.00038 19.8 1.0 0.00097 18.5 0.4 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|134045306|ref|YP_001096792.1| - 0.00048 19.3 2.6 0.00059 19.0 0.5 2.1 3 0 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.7 gi|134045306|ref|YP_001096792.1| - 0.0019 17.6 0.0 0.0029 17.0 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|134045306|ref|YP_001096792.1| - 0.0025 16.9 0.1 0.0044 16.1 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein ApbA PF02558.16 gi|134045306|ref|YP_001096792.1| - 0.01 15.5 0.1 0.93 9.1 0.0 2.4 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Amino_oxidase PF01593.24 gi|134045306|ref|YP_001096792.1| - 0.015 14.6 0.0 0.5 9.6 0.0 2.3 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase PglD_N PF17836.1 gi|134045306|ref|YP_001096792.1| - 0.017 15.8 2.1 0.34 11.6 0.1 2.9 2 1 0 2 2 2 0 PglD N-terminal domain K_oxygenase PF13434.6 gi|134045306|ref|YP_001096792.1| - 0.021 14.0 0.0 0.16 11.1 0.0 2.3 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_Gly3P_dh_N PF01210.23 gi|134045306|ref|YP_001096792.1| - 0.022 14.7 0.0 2.2 8.3 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.6 gi|134045306|ref|YP_001096792.1| - 0.026 15.0 0.0 1.7 9.2 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain Trp_halogenase PF04820.14 gi|134045306|ref|YP_001096792.1| - 0.035 13.0 0.2 0.12 11.1 0.0 1.8 2 0 0 2 2 2 0 Tryptophan halogenase AdoHcyase_NAD PF00670.21 gi|134045306|ref|YP_001096792.1| - 0.041 14.0 0.1 0.11 12.6 0.0 1.8 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_9 PF13454.6 gi|134045306|ref|YP_001096792.1| - 0.08 12.9 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|134045306|ref|YP_001096792.1| - 0.13 11.8 0.3 18 4.8 0.0 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.20 gi|134045306|ref|YP_001096792.1| - 0.14 12.2 0.0 0.59 10.2 0.0 2.1 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase SNARE_assoc PF09335.11 gi|134045307|ref|YP_001096793.1| - 7.4e-18 65.2 4.3 7.4e-18 65.2 4.3 1.6 1 1 1 2 2 2 1 SNARE associated Golgi protein Sm_multidrug_ex PF06695.11 gi|134045307|ref|YP_001096793.1| - 0.019 15.6 0.8 0.04 14.6 0.7 1.7 1 1 0 1 1 1 0 Putative small multi-drug export protein HupF_HypC PF01455.18 gi|134045308|ref|YP_001096794.1| - 4.2e-21 74.9 0.0 5.4e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 HupF/HypC family Cyclase PF04199.13 gi|134045308|ref|YP_001096794.1| - 0.051 13.8 0.0 0.062 13.5 0.0 1.1 1 0 0 1 1 1 0 Putative cyclase Fer4 PF00037.27 gi|134045309|ref|YP_001096795.1| - 1.1e-10 40.9 18.6 5.1e-08 32.4 3.1 3.0 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|134045309|ref|YP_001096795.1| - 2.1e-09 37.4 21.8 2.5e-07 30.7 12.0 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045309|ref|YP_001096795.1| - 3.8e-08 33.8 25.3 4.9e-07 30.3 13.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134045309|ref|YP_001096795.1| - 4.3e-08 32.9 16.0 6.7e-05 22.8 4.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134045309|ref|YP_001096795.1| - 1.3e-07 31.7 10.5 1.7e-07 31.3 10.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134045309|ref|YP_001096795.1| - 2.4e-07 30.8 12.4 3.7e-07 30.2 12.4 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045309|ref|YP_001096795.1| - 1.2e-06 29.3 9.3 0.00059 20.7 1.4 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|134045309|ref|YP_001096795.1| - 9.1e-05 22.3 14.6 0.011 15.8 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|134045309|ref|YP_001096795.1| - 0.0016 18.8 13.2 0.091 13.3 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|134045309|ref|YP_001096795.1| - 0.0049 17.0 2.8 0.0049 17.0 2.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|134045309|ref|YP_001096795.1| - 0.0069 17.3 18.7 0.015 16.1 5.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_19 PF06902.11 gi|134045309|ref|YP_001096795.1| - 0.019 15.0 4.6 0.023 14.8 4.6 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_15 PF13459.6 gi|134045309|ref|YP_001096795.1| - 0.035 14.8 14.9 0.044 14.5 2.3 2.6 1 1 2 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|134045309|ref|YP_001096795.1| - 0.04 14.5 14.5 1.4 9.5 14.5 2.3 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|134045309|ref|YP_001096795.1| - 0.13 12.9 10.9 0.44 11.1 1.4 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134045309|ref|YP_001096795.1| - 0.45 11.0 13.8 0.31 11.5 1.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Enolase_N PF03952.16 gi|134045310|ref|YP_001096796.1| - 2.2e-07 31.1 0.0 5.7e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 Enolase, N-terminal domain RNA_pol_Rpb6 PF01192.22 gi|134045311|ref|YP_001096797.1| - 6.8e-10 38.7 0.0 7.8e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|134045312|ref|YP_001096798.1| - 5e-26 90.8 0.3 5.5e-26 90.6 0.3 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|134045312|ref|YP_001096798.1| - 0.00079 19.6 0.3 0.0012 19.1 0.3 1.3 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) DUF4116 PF13475.6 gi|134045312|ref|YP_001096798.1| - 0.12 12.1 2.0 1.5 8.6 1.4 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4116) Ribosomal_S9 PF00380.19 gi|134045313|ref|YP_001096799.1| - 9.8e-25 87.4 0.4 1.1e-24 87.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|134045314|ref|YP_001096800.1| - 1e-08 35.5 1.6 1.7e-06 28.3 1.6 2.1 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|134045315|ref|YP_001096801.1| - 3.9e-11 42.7 0.0 4.2e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|134045315|ref|YP_001096801.1| - 5.7e-09 36.7 2.6 1.7e-08 35.2 2.6 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DUF4816 PF16086.5 gi|134045315|ref|YP_001096801.1| - 0.038 13.9 1.7 0.074 13.0 1.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4816) RNA_pol_A_bac PF01000.26 gi|134045316|ref|YP_001096802.1| - 5.9e-22 78.2 0.1 5e-20 71.9 0.0 2.5 2 1 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|134045316|ref|YP_001096802.1| - 7.4e-14 50.9 0.0 1e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.19 gi|134045317|ref|YP_001096803.1| - 1.2e-43 148.0 1.3 1.3e-43 147.8 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|134045317|ref|YP_001096803.1| - 0.013 15.2 0.2 0.017 14.9 0.2 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) DUF3010 PF11215.8 gi|134045317|ref|YP_001096803.1| - 0.037 14.3 0.0 0.041 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3010) S4 PF01479.25 gi|134045318|ref|YP_001096804.1| - 1.2e-19 69.7 1.0 1.4e-17 63.1 0.2 2.4 2 0 0 2 2 2 2 S4 domain Ribosomal_S13 PF00416.22 gi|134045319|ref|YP_001096805.1| - 4.7e-36 124.0 0.1 5.4e-36 123.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|134045319|ref|YP_001096805.1| - 0.07 11.9 0.0 0.076 11.8 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) tRNA-synt_1f PF01921.18 gi|134045320|ref|YP_001096806.1| - 5.5e-138 459.8 0.1 5.5e-138 459.8 0.1 1.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|134045320|ref|YP_001096806.1| - 4.4e-05 22.4 0.0 0.022 13.5 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|134045320|ref|YP_001096806.1| - 5.6e-05 22.6 0.3 1.4 8.2 0.0 3.7 4 0 0 4 4 4 2 tRNA synthetases class I (C) catalytic domain DUF2387 PF09526.10 gi|134045320|ref|YP_001096806.1| - 0.039 14.1 1.7 0.1 12.7 0.2 2.2 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) FlaC_arch PF05377.11 gi|134045320|ref|YP_001096806.1| - 2.5 8.6 7.5 1.4 9.3 0.3 2.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) SBP_bac_3 PF00497.20 gi|134045321|ref|YP_001096807.1| - 0.039 13.4 0.1 0.081 12.3 0.1 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 TPP_enzyme_C PF02775.21 gi|134045322|ref|YP_001096808.1| - 1.2e-37 129.0 0.0 1.9e-37 128.4 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR PF01558.18 gi|134045323|ref|YP_001096809.1| - 6.2e-36 124.1 0.1 7.3e-36 123.9 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DnaJ_CXXCXGXG PF00684.19 gi|134045324|ref|YP_001096810.1| - 3.4e-10 40.1 22.8 2.1e-09 37.6 8.8 3.5 2 1 2 4 4 4 3 DnaJ central domain S1 PF00575.23 gi|134045324|ref|YP_001096810.1| - 1.1e-07 32.1 1.7 2.2e-07 31.1 0.4 2.2 2 0 0 2 2 2 1 S1 RNA binding domain DHH PF01368.20 gi|134045324|ref|YP_001096810.1| - 0.00011 22.4 0.0 0.0002 21.5 0.0 1.5 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.25 gi|134045324|ref|YP_001096810.1| - 0.00027 20.9 0.1 0.0012 18.8 0.2 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Anti-TRAP PF15777.5 gi|134045324|ref|YP_001096810.1| - 0.00084 19.3 25.6 0.047 13.7 2.1 4.5 3 1 1 4 4 4 2 Tryptophan RNA-binding attenuator protein inhibitory protein RMI2 PF16100.5 gi|134045324|ref|YP_001096810.1| - 0.0026 17.6 0.3 0.0052 16.6 0.3 1.4 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 S1_2 PF13509.6 gi|134045324|ref|YP_001096810.1| - 0.1 12.7 0.1 0.29 11.2 0.1 1.8 1 0 0 1 1 1 0 S1 domain DUF1356 PF07092.12 gi|134045324|ref|YP_001096810.1| - 0.77 9.0 3.8 0.33 10.2 0.4 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1356) DUF5351 PF17302.2 gi|134045324|ref|YP_001096810.1| - 2.8 8.2 29.7 5.6 7.2 1.2 5.7 5 0 0 5 5 5 0 Family of unknown function (DUF5351) CxC3 PF18804.1 gi|134045324|ref|YP_001096810.1| - 4.3 7.2 5.3 1.7 8.5 0.8 2.3 2 1 0 2 2 2 0 CxC3 like cysteine cluster associated with KDZ transposases XPG_I PF00867.18 gi|134045325|ref|YP_001096811.1| - 1.4e-26 92.6 1.5 2.1e-26 92.1 0.1 2.1 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.17 gi|134045325|ref|YP_001096811.1| - 2.8e-17 63.0 0.0 5.4e-17 62.1 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|134045325|ref|YP_001096811.1| - 0.21 12.2 2.2 0.37 11.4 0.1 2.5 1 1 2 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold DUF808 PF05661.12 gi|134045326|ref|YP_001096812.1| - 0.031 13.3 0.2 0.041 12.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF808) Fer4 PF00037.27 gi|134045327|ref|YP_001096813.1| - 3.2e-12 45.7 17.6 1.8e-06 27.5 5.0 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|134045327|ref|YP_001096813.1| - 5.3e-08 32.8 13.1 0.00039 20.7 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|134045327|ref|YP_001096813.1| - 1.7e-07 32.0 9.5 0.00028 21.7 0.8 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|134045327|ref|YP_001096813.1| - 2.2e-07 31.4 13.0 5.9e-07 30.0 13.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134045327|ref|YP_001096813.1| - 6.6e-07 29.4 15.4 0.001 19.2 4.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045327|ref|YP_001096813.1| - 8.1e-07 29.1 14.4 0.0011 19.0 3.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045327|ref|YP_001096813.1| - 1.1e-06 28.7 11.0 1.9e-06 27.9 11.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134045327|ref|YP_001096813.1| - 2.7e-06 27.2 16.6 0.0019 18.2 4.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134045327|ref|YP_001096813.1| - 3.6e-06 26.7 13.2 0.0026 17.8 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|134045327|ref|YP_001096813.1| - 0.00061 20.3 12.3 0.055 14.0 1.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134045327|ref|YP_001096813.1| - 0.0022 18.4 12.7 0.064 13.7 2.0 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|134045327|ref|YP_001096813.1| - 0.012 16.1 13.2 0.45 11.1 4.2 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|134045327|ref|YP_001096813.1| - 0.033 15.1 20.3 0.21 12.6 8.5 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|134045327|ref|YP_001096813.1| - 0.34 11.8 12.4 1.9 9.4 1.1 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|134045327|ref|YP_001096813.1| - 1.7 8.9 12.2 4.7 7.4 12.2 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134045327|ref|YP_001096813.1| - 2.8 8.7 17.2 2.5 8.9 3.7 3.1 2 2 1 3 3 3 0 4Fe-4S single cluster domain IMP_cyclohyd PF07826.11 gi|134045328|ref|YP_001096814.1| - 2e-70 236.3 0.8 2.4e-70 236.1 0.8 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein CBS PF00571.28 gi|134045328|ref|YP_001096814.1| - 0.064 13.7 0.2 0.16 12.5 0.2 1.7 1 0 0 1 1 1 0 CBS domain DUF2119 PF09892.9 gi|134045329|ref|YP_001096815.1| - 4.4e-67 225.1 1.8 5e-67 224.9 1.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) AstE_AspA PF04952.14 gi|134045329|ref|YP_001096815.1| - 0.12 11.4 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Succinylglutamate desuccinylase / Aspartoacylase family RNA_polI_A14 PF08203.11 gi|134045329|ref|YP_001096815.1| - 0.14 12.9 0.0 0.34 11.7 0.0 1.7 1 0 0 1 1 1 0 Yeast RNA polymerase I subunit RPA14 TAL_FSA PF00923.19 gi|134045330|ref|YP_001096816.1| - 1.9e-64 217.8 0.5 9.6e-64 215.5 0.5 1.9 1 1 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase Methyltrans_SAM PF10672.9 gi|134045331|ref|YP_001096817.1| - 3.2e-12 46.2 0.1 4.6e-12 45.7 0.1 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Met_10 PF02475.16 gi|134045331|ref|YP_001096817.1| - 2.7e-11 43.6 1.4 4.6e-11 42.8 1.4 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|134045331|ref|YP_001096817.1| - 3.3e-09 36.6 0.0 5.8e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|134045331|ref|YP_001096817.1| - 1.2e-08 34.8 0.1 2.2e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|134045331|ref|YP_001096817.1| - 2.4e-08 33.7 0.7 4.5e-08 32.8 0.7 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|134045331|ref|YP_001096817.1| - 1.2e-07 31.5 0.2 2.3e-07 30.5 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|134045331|ref|YP_001096817.1| - 1.4e-07 31.0 0.2 2.4e-07 30.3 0.2 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_25 PF13649.6 gi|134045331|ref|YP_001096817.1| - 2.8e-07 31.2 0.0 6.7e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|134045331|ref|YP_001096817.1| - 5e-07 29.4 0.2 1e-06 28.4 0.2 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase FtsJ PF01728.19 gi|134045331|ref|YP_001096817.1| - 3.3e-06 27.3 0.1 1.2e-05 25.5 0.0 1.9 3 0 0 3 3 2 1 FtsJ-like methyltransferase PUA PF01472.20 gi|134045331|ref|YP_001096817.1| - 2.7e-05 24.1 0.0 0.00061 19.7 0.0 2.4 2 0 0 2 2 2 1 PUA domain Ubie_methyltran PF01209.18 gi|134045331|ref|YP_001096817.1| - 6.8e-05 22.3 0.2 0.00014 21.3 0.2 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PUA_3 PF17785.1 gi|134045331|ref|YP_001096817.1| - 7.8e-05 22.4 0.0 0.00018 21.2 0.0 1.7 1 0 0 1 1 1 1 PUA-like domain Methyltr_RsmB-F PF01189.17 gi|134045331|ref|YP_001096817.1| - 0.00016 21.4 0.2 0.00085 19.0 0.0 2.2 2 1 1 3 3 3 1 16S rRNA methyltransferase RsmB/F Methyltransf_18 PF12847.7 gi|134045331|ref|YP_001096817.1| - 0.0008 19.4 0.1 0.0024 17.8 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|134045331|ref|YP_001096817.1| - 0.00099 19.7 0.1 0.0022 18.6 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|134045331|ref|YP_001096817.1| - 0.0013 18.6 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|134045331|ref|YP_001096817.1| - 0.0015 18.1 0.1 0.0038 16.7 0.1 1.6 1 0 0 1 1 1 1 Putative methyltransferase DHquinase_II PF01220.19 gi|134045331|ref|YP_001096817.1| - 0.0022 17.7 0.2 0.0054 16.4 0.2 1.7 1 1 0 1 1 1 1 Dehydroquinase class II Methyltransf_12 PF08242.12 gi|134045331|ref|YP_001096817.1| - 0.0042 17.8 0.0 0.012 16.4 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|134045331|ref|YP_001096817.1| - 0.021 14.8 0.1 0.053 13.5 0.0 1.8 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Methyltransf_10 PF05971.12 gi|134045331|ref|YP_001096817.1| - 0.024 14.0 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 RNA methyltransferase CMAS PF02353.20 gi|134045331|ref|YP_001096817.1| - 0.039 13.2 0.1 0.1 11.9 0.0 1.6 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase UPF0020 PF01170.18 gi|134045331|ref|YP_001096817.1| - 0.047 13.4 0.0 0.082 12.6 0.0 1.5 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PPS_PS PF02006.16 gi|134045332|ref|YP_001096818.1| - 2.7e-72 242.0 3.0 3.4e-72 241.7 3.0 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase PhaP_Bmeg PF09602.10 gi|134045332|ref|YP_001096818.1| - 0.052 13.5 0.1 0.26 11.2 0.0 2.0 2 0 0 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) FIST PF08495.10 gi|134045333|ref|YP_001096819.1| - 2e-20 73.5 0.0 2.1e-19 70.2 0.0 2.0 2 0 0 2 2 2 1 FIST N domain MarR PF01047.22 gi|134045333|ref|YP_001096819.1| - 0.0011 18.9 0.0 0.0025 17.7 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|134045333|ref|YP_001096819.1| - 0.0015 18.4 0.0 0.0035 17.2 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|134045333|ref|YP_001096819.1| - 0.014 15.3 0.0 0.039 13.9 0.0 1.8 1 0 0 1 1 1 0 HTH domain RuvB_C PF05491.13 gi|134045333|ref|YP_001096819.1| - 0.021 14.7 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_20 PF12840.7 gi|134045333|ref|YP_001096819.1| - 0.068 13.2 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Lin0512_fam PF09585.10 gi|134045333|ref|YP_001096819.1| - 0.18 11.8 0.0 21 5.2 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical protein (Lin0512_fam) HTH_30 PF13556.6 gi|134045333|ref|YP_001096819.1| - 0.2 11.5 0.0 0.39 10.5 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Response_reg PF00072.24 gi|134045334|ref|YP_001096820.1| - 8.2e-30 103.3 2.6 9.2e-30 103.1 2.6 1.0 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.15 gi|134045334|ref|YP_001096820.1| - 0.0082 16.4 0.1 0.0099 16.1 0.1 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain sCache_3_3 PF17202.4 gi|134045335|ref|YP_001096821.1| - 2.3e-34 118.0 1.0 2.2e-33 114.8 0.5 2.5 2 0 0 2 2 2 1 Single cache domain 3 HATPase_c PF02518.26 gi|134045335|ref|YP_001096821.1| - 2e-31 108.8 0.5 1.1e-30 106.4 0.1 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_3-Cache_2 PF17201.4 gi|134045335|ref|YP_001096821.1| - 8.3e-27 94.2 0.8 8.3e-27 94.2 0.8 1.9 2 0 0 2 2 2 1 Cache 3/Cache 2 fusion domain HisKA PF00512.25 gi|134045335|ref|YP_001096821.1| - 3.5e-18 65.4 2.6 5e-18 64.9 0.1 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain dCache_3 PF14827.6 gi|134045335|ref|YP_001096821.1| - 2.7e-15 56.7 0.6 5.3e-15 55.7 0.6 1.4 1 0 0 1 1 1 1 Double sensory domain of two-component sensor kinase HAMP PF00672.25 gi|134045335|ref|YP_001096821.1| - 1.3e-14 54.3 0.1 4.8e-14 52.5 0.0 2.0 2 0 0 2 2 2 1 HAMP domain sCache_3_2 PF17203.4 gi|134045335|ref|YP_001096821.1| - 2e-10 40.9 0.2 1.3e-05 25.3 0.0 2.8 2 1 0 2 2 2 2 Single cache domain 3 dCache_1 PF02743.18 gi|134045335|ref|YP_001096821.1| - 3.7e-08 33.5 11.1 0.00013 21.8 3.8 2.6 1 1 1 2 2 2 2 Cache domain HATPase_c_3 PF13589.6 gi|134045335|ref|YP_001096821.1| - 2.4e-05 24.2 0.0 9.3e-05 22.3 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|134045335|ref|YP_001096821.1| - 9.3e-05 22.3 0.0 0.00031 20.6 0.0 1.9 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|134045335|ref|YP_001096821.1| - 0.02 14.9 0.0 0.045 13.7 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Myb_DNA-bind_3 PF12776.7 gi|134045335|ref|YP_001096821.1| - 0.02 15.9 0.3 0.22 12.5 0.1 2.6 2 0 0 2 2 2 0 Myb/SANT-like DNA-binding domain Chlorosome_CsmC PF11098.8 gi|134045335|ref|YP_001096821.1| - 0.023 14.7 0.5 0.023 14.7 0.5 2.2 2 0 0 2 2 2 0 Chlorosome envelope protein C EIF_2_alpha PF07541.12 gi|134045335|ref|YP_001096821.1| - 0.2 11.8 0.1 0.2 11.8 0.1 2.2 3 0 0 3 3 2 0 Eukaryotic translation initiation factor 2 alpha subunit DALR_2 PF09190.11 gi|134045335|ref|YP_001096821.1| - 0.34 11.4 2.8 6.3 7.4 0.1 2.6 2 0 0 2 2 2 0 DALR domain SeleniumBinding PF11524.8 gi|134045336|ref|YP_001096822.1| - 3.7e-39 133.0 1.2 4.1e-39 132.9 1.2 1.0 1 0 0 1 1 1 1 Selenium binding protein Form_Nir_trans PF01226.17 gi|134045337|ref|YP_001096823.1| - 4.3e-75 252.1 34.4 4.9e-75 251.9 34.4 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter NPHI_C PF08469.10 gi|134045338|ref|YP_001096824.1| - 0.051 13.6 0.1 0.084 12.9 0.1 1.2 1 0 0 1 1 1 0 Nucleoside triphosphatase I C-terminal Enoyl_reductase PF12241.8 gi|134045338|ref|YP_001096824.1| - 0.079 12.3 0.1 0.11 11.8 0.1 1.2 1 0 0 1 1 1 0 Trans-2-enoyl-CoA reductase catalytic region DUF4131 PF13567.6 gi|134045338|ref|YP_001096824.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) VirB3 PF05101.13 gi|134045338|ref|YP_001096824.1| - 0.29 11.4 3.2 0.5 10.6 3.2 1.4 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein Pro_CA PF00484.19 gi|134045339|ref|YP_001096825.1| - 1.3e-16 61.3 0.3 4.4e-15 56.3 0.3 2.0 1 1 0 1 1 1 1 Carbonic anhydrase NUMOD3 PF07460.11 gi|134045339|ref|YP_001096825.1| - 0.19 12.0 0.0 0.47 10.7 0.0 1.7 1 0 0 1 1 1 0 NUMOD3 motif (2 copies) Molybdopterin PF00384.22 gi|134045340|ref|YP_001096826.1| - 9.2e-103 344.5 0.0 1.8e-102 343.5 0.0 1.5 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|134045340|ref|YP_001096826.1| - 2.5e-32 111.2 0.1 5.1e-32 110.2 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|134045340|ref|YP_001096826.1| - 4e-18 65.1 2.1 1.1e-17 63.7 2.1 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain SIS PF01380.22 gi|134045340|ref|YP_001096826.1| - 0.0031 17.4 0.1 0.0062 16.4 0.1 1.4 1 0 0 1 1 1 1 SIS domain FrhB_FdhB_C PF04432.13 gi|134045341|ref|YP_001096827.1| - 2.3e-34 118.5 0.3 2.3e-34 118.5 0.3 2.1 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|134045341|ref|YP_001096827.1| - 1.1e-21 76.7 0.0 2e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_17 PF13534.6 gi|134045341|ref|YP_001096827.1| - 1.8e-07 31.6 17.3 4.3e-06 27.2 14.1 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045341|ref|YP_001096827.1| - 3.6e-06 27.0 15.7 0.00051 20.1 0.4 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|134045341|ref|YP_001096827.1| - 2.3e-05 24.0 21.4 0.001 18.8 4.3 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134045341|ref|YP_001096827.1| - 3.4e-05 23.9 17.1 0.00089 19.4 0.2 3.6 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134045341|ref|YP_001096827.1| - 3.4e-05 24.2 16.7 0.00028 21.3 15.3 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045341|ref|YP_001096827.1| - 0.00022 21.7 18.7 0.019 15.5 3.6 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|134045341|ref|YP_001096827.1| - 0.00034 20.8 10.5 0.13 12.5 0.4 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134045341|ref|YP_001096827.1| - 0.0011 19.3 2.8 0.0011 19.3 2.8 4.0 4 1 0 4 4 3 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|134045341|ref|YP_001096827.1| - 0.009 16.8 19.7 0.36 11.7 1.3 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045341|ref|YP_001096827.1| - 0.016 16.2 18.0 0.037 15.0 0.4 3.5 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|134045341|ref|YP_001096827.1| - 0.041 14.0 5.0 0.041 14.0 5.0 3.3 4 0 0 4 4 3 0 4Fe-4S binding domain PBSX_XtrA PF17356.2 gi|134045341|ref|YP_001096827.1| - 0.095 12.6 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 Phage-like element PBSX protein XtrA Fer4_20 PF14691.6 gi|134045341|ref|YP_001096827.1| - 0.16 11.8 0.2 0.16 11.8 0.2 2.5 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.7 gi|134045341|ref|YP_001096827.1| - 1.3 9.3 26.7 0.064 13.4 3.6 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|134045341|ref|YP_001096827.1| - 1.7 9.2 16.4 7.7 7.1 6.3 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|134045341|ref|YP_001096827.1| - 4.2 7.6 23.4 93 3.3 9.4 3.3 3 1 1 4 4 3 0 4Fe-4S dicluster domain ADP_PFK_GK PF04587.15 gi|134045342|ref|YP_001096828.1| - 3e-118 395.1 4.1 3.4e-118 394.9 4.1 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region UPF0242 PF06785.11 gi|134045342|ref|YP_001096828.1| - 0.058 13.5 1.9 0.18 11.9 1.9 1.8 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus PGI PF00342.19 gi|134045343|ref|YP_001096829.1| - 1.7e-38 132.5 0.5 6.9e-37 127.2 0.5 2.1 1 1 0 1 1 1 1 Phosphoglucose isomerase SIS PF01380.22 gi|134045343|ref|YP_001096829.1| - 0.15 11.9 0.0 0.41 10.5 0.0 1.8 1 0 0 1 1 1 0 SIS domain Glyco_transf_5 PF08323.11 gi|134045344|ref|YP_001096830.1| - 1.5e-27 96.8 0.0 3.6e-27 95.6 0.0 1.6 1 1 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|134045344|ref|YP_001096830.1| - 2.9e-20 72.5 0.0 7.3e-20 71.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|134045344|ref|YP_001096830.1| - 8.2e-17 61.9 0.0 1.4e-16 61.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|134045344|ref|YP_001096830.1| - 5.9e-07 29.6 0.0 2e-06 27.9 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|134045344|ref|YP_001096830.1| - 0.18 12.2 0.0 0.37 11.2 0.0 1.4 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|134045345|ref|YP_001096831.1| - 2.3e-43 147.7 0.0 3.3e-43 147.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|134045345|ref|YP_001096831.1| - 5.5e-31 107.8 0.0 2.1e-30 106.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|134045345|ref|YP_001096831.1| - 5.1e-29 101.4 0.0 8.9e-29 100.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|134045345|ref|YP_001096831.1| - 3.3e-24 85.9 0.7 1.3e-11 44.7 0.1 2.6 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|134045345|ref|YP_001096831.1| - 5e-19 69.3 0.0 1.3e-18 68.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|134045345|ref|YP_001096831.1| - 2e-09 37.6 0.0 4.2e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|134045345|ref|YP_001096831.1| - 2.5e-07 31.0 0.0 4.5e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|134045345|ref|YP_001096831.1| - 0.0038 16.0 0.0 0.3 9.7 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase family 20 Glyco_hydro_15 PF00723.21 gi|134045346|ref|YP_001096832.1| - 6.7e-19 68.0 1.0 5.1e-13 48.6 0.3 3.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 DUF4965 PF16335.5 gi|134045346|ref|YP_001096832.1| - 0.00025 20.7 0.2 0.00057 19.6 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4965) Prenyltrans PF00432.21 gi|134045346|ref|YP_001096832.1| - 0.0026 17.5 1.4 0.028 14.2 0.0 3.2 4 0 0 4 4 4 1 Prenyltransferase and squalene oxidase repeat Glyco_transf_36 PF06165.11 gi|134045346|ref|YP_001096832.1| - 0.033 13.6 0.1 0.092 12.1 0.1 1.8 1 1 0 1 1 1 0 Glycosyltransferase family 36 Glyco_hydro_57 PF03065.15 gi|134045347|ref|YP_001096833.1| - 2.4e-64 217.6 2.4 4.4e-64 216.7 2.4 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|134045347|ref|YP_001096833.1| - 3.5e-05 23.7 0.0 6e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2115 PF09888.9 gi|134045347|ref|YP_001096833.1| - 0.057 13.9 0.7 0.12 12.9 0.7 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) MMR_HSR1 PF01926.23 gi|134045348|ref|YP_001096834.1| - 6.2e-18 64.9 0.2 9.4e-18 64.4 0.2 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|134045348|ref|YP_001096834.1| - 4.1e-12 45.9 0.9 3.7e-11 42.8 0.9 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|134045348|ref|YP_001096834.1| - 0.0002 21.3 0.3 0.12 12.2 0.4 2.5 2 1 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|134045348|ref|YP_001096834.1| - 0.0025 17.4 0.6 0.079 12.5 0.7 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MeaB PF03308.16 gi|134045348|ref|YP_001096834.1| - 0.0083 15.1 0.2 1.5 7.7 0.0 2.3 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB SRPRB PF09439.10 gi|134045348|ref|YP_001096834.1| - 0.021 14.2 0.2 0.042 13.3 0.2 1.5 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit PduV-EutP PF10662.9 gi|134045348|ref|YP_001096834.1| - 0.056 13.2 0.4 0.13 12.0 0.4 1.7 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Gtr1_RagA PF04670.12 gi|134045348|ref|YP_001096834.1| - 0.067 12.5 1.6 0.14 11.5 1.6 1.6 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region DUF1749 PF08538.10 gi|134045348|ref|YP_001096834.1| - 0.068 12.2 0.1 0.61 9.1 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1749) ABC_tran PF00005.27 gi|134045348|ref|YP_001096834.1| - 0.19 12.2 0.5 0.32 11.5 0.5 1.7 1 1 0 1 1 1 0 ABC transporter Roc PF08477.13 gi|134045348|ref|YP_001096834.1| - 0.34 11.1 3.3 0.23 11.7 0.5 2.1 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|134045348|ref|YP_001096834.1| - 0.56 10.2 8.5 0.08 13.0 1.9 2.7 2 1 0 2 2 2 0 Dynamin family Ribosomal_L16 PF00252.18 gi|134045349|ref|YP_001096835.1| - 5.2e-29 100.9 0.2 6.3e-29 100.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF4189 PF13827.6 gi|134045349|ref|YP_001096835.1| - 0.0069 16.9 0.0 0.012 16.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4189) UbiD PF01977.16 gi|134045350|ref|YP_001096836.1| - 5.7e-86 288.9 0.0 7e-86 288.6 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Peptidase_C31 PF05410.13 gi|134045350|ref|YP_001096836.1| - 0.016 15.3 0.0 0.45 10.6 0.0 2.5 2 0 0 2 2 2 0 Porcine arterivirus-type cysteine proteinase alpha DUF1577 PF07614.11 gi|134045350|ref|YP_001096836.1| - 0.28 10.2 1.8 0.56 9.3 1.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1577) UPF0058 PF01893.16 gi|134045351|ref|YP_001096837.1| - 2.4e-31 107.8 0.3 2.9e-31 107.6 0.3 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Toprim_4 PF13662.6 gi|134045352|ref|YP_001096838.1| - 6.7e-13 48.9 0.1 1.9e-12 47.4 0.1 1.9 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|134045352|ref|YP_001096838.1| - 3e-05 24.4 0.0 8.6e-05 22.9 0.0 1.8 1 1 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|134045352|ref|YP_001096838.1| - 0.0025 18.0 0.5 0.015 15.5 0.2 2.5 1 1 0 1 1 1 1 Toprim domain DUF3799 PF12684.7 gi|134045352|ref|YP_001096838.1| - 0.05 13.4 0.4 0.1 12.4 0.4 1.4 1 0 0 1 1 1 0 PDDEXK-like domain of unknown function (DUF3799) RPN6_C_helix PF18503.1 gi|134045352|ref|YP_001096838.1| - 0.089 12.6 0.7 15 5.4 0.1 2.8 2 0 0 2 2 2 0 26S proteasome subunit RPN6 C-terminal helix domain DUF2334 PF10096.9 gi|134045353|ref|YP_001096839.1| - 2.6e-32 112.2 2.2 3.2e-32 111.9 2.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Polysacc_deac_1 PF01522.21 gi|134045353|ref|YP_001096839.1| - 0.025 14.5 0.0 0.14 12.1 0.0 2.0 1 1 1 2 2 2 0 Polysaccharide deacetylase PulA_N1 PF17999.1 gi|134045353|ref|YP_001096839.1| - 0.075 13.8 4.9 3 8.6 0.3 2.6 2 1 0 2 2 2 0 Pullulanase N1-terminal domain DEAD PF00270.29 gi|134045354|ref|YP_001096840.1| - 3.9e-20 72.3 0.0 8.5e-20 71.2 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|134045354|ref|YP_001096840.1| - 3.5e-15 56.3 0.0 3e-14 53.3 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|134045354|ref|YP_001096840.1| - 7.3e-11 42.4 0.0 1.6e-10 41.3 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit MIX PF18529.1 gi|134045354|ref|YP_001096840.1| - 0.13 12.0 0.2 0.51 10.0 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial membrane-anchored proteins Class_IIIsignal PF04021.12 gi|134045355|ref|YP_001096841.1| - 3.7e-10 39.5 0.5 5e-10 39.0 0.5 1.2 1 0 0 1 1 1 1 Class III signal peptide DUF4244 PF14029.6 gi|134045355|ref|YP_001096841.1| - 0.053 13.0 0.0 0.07 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4244) Neurensin PF14927.6 gi|134045355|ref|YP_001096841.1| - 0.061 13.0 0.1 0.065 12.9 0.1 1.1 1 0 0 1 1 1 0 Neurensin Inhibitor_I53 PF11714.8 gi|134045355|ref|YP_001096841.1| - 0.1 12.8 0.4 0.16 12.2 0.4 1.3 1 1 0 1 1 1 0 Thrombin inhibitor Madanin AAA_17 PF13207.6 gi|134045356|ref|YP_001096842.1| - 5.3e-15 56.0 0.0 8.6e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|134045356|ref|YP_001096842.1| - 9.3e-13 48.9 0.1 1.4e-12 48.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|134045356|ref|YP_001096842.1| - 0.00063 19.9 0.1 0.00073 19.7 0.1 1.4 1 1 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|134045356|ref|YP_001096842.1| - 0.002 18.3 0.1 1.8 8.7 0.0 2.4 2 1 0 2 2 2 2 AAA domain CoaE PF01121.20 gi|134045356|ref|YP_001096842.1| - 0.0024 17.5 0.1 0.017 14.8 0.0 2.0 2 0 0 2 2 2 1 Dephospho-CoA kinase KTI12 PF08433.10 gi|134045356|ref|YP_001096842.1| - 0.0083 15.6 0.1 0.014 14.8 0.1 1.4 1 1 0 1 1 1 1 Chromatin associated protein KTI12 MeaB PF03308.16 gi|134045356|ref|YP_001096842.1| - 0.03 13.3 1.1 0.049 12.6 0.1 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|134045356|ref|YP_001096842.1| - 0.036 14.0 2.4 1.4 8.8 0.3 2.3 1 1 0 2 2 2 0 NTPase APS_kinase PF01583.20 gi|134045356|ref|YP_001096842.1| - 0.036 14.0 0.0 0.071 13.0 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Acetyltransf_1 PF00583.25 gi|134045357|ref|YP_001096843.1| - 3.2e-15 56.4 0.2 3.9e-15 56.1 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|134045357|ref|YP_001096843.1| - 6.6e-11 42.2 0.0 9e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|134045357|ref|YP_001096843.1| - 4.4e-10 39.8 0.1 6.8e-10 39.2 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|134045357|ref|YP_001096843.1| - 3.4e-05 23.7 0.0 9.4e-05 22.3 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|134045357|ref|YP_001096843.1| - 0.0095 16.6 0.0 0.012 16.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|134045357|ref|YP_001096843.1| - 0.029 14.5 0.0 0.25 11.5 0.0 2.0 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|134045357|ref|YP_001096843.1| - 0.036 14.2 0.1 0.047 13.8 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|134045357|ref|YP_001096843.1| - 0.053 13.0 0.0 0.074 12.5 0.0 1.3 1 1 0 1 1 1 0 Putative acetyl-transferase CRCB PF02537.15 gi|134045358|ref|YP_001096844.1| - 1.6e-25 89.2 9.2 1.9e-25 89.0 9.2 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) Cytochrom_B558a PF05038.13 gi|134045358|ref|YP_001096844.1| - 0.19 11.3 3.1 4.6 6.8 0.1 2.1 2 0 0 2 2 2 0 Cytochrome Cytochrome b558 alpha-subunit DUF190 PF02641.15 gi|134045359|ref|YP_001096845.1| - 7e-30 103.2 0.0 7.9e-30 103.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 FAD_binding_2 PF00890.24 gi|134045360|ref|YP_001096846.1| - 8.1e-96 321.6 0.0 1.3e-95 321.0 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|134045360|ref|YP_001096846.1| - 4.6e-18 65.4 0.0 1.8e-17 63.5 0.0 1.9 1 1 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|134045360|ref|YP_001096846.1| - 1.7e-08 34.1 1.9 0.00074 18.8 0.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Cupin_2 PF07883.11 gi|134045361|ref|YP_001096847.1| - 3.3e-15 55.5 0.0 9.1e-15 54.1 0.0 1.7 2 0 0 2 2 2 1 Cupin domain HTH_19 PF12844.7 gi|134045361|ref|YP_001096847.1| - 1.8e-11 43.8 0.0 4.4e-11 42.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|134045361|ref|YP_001096847.1| - 1.1e-06 28.6 0.0 2.2e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|134045361|ref|YP_001096847.1| - 1.2e-06 28.7 0.0 1.8e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Cupin_3 PF05899.12 gi|134045361|ref|YP_001096847.1| - 0.00036 20.2 0.0 0.00071 19.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|134045361|ref|YP_001096847.1| - 0.00043 20.2 0.0 0.00081 19.3 0.0 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_25 PF13413.6 gi|134045361|ref|YP_001096847.1| - 0.016 15.1 0.0 0.044 13.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-C_C PF11699.8 gi|134045361|ref|YP_001096847.1| - 0.073 13.3 0.0 0.25 11.6 0.0 1.9 2 1 1 3 3 3 0 Mif2/CENP-C like MannoseP_isomer PF01050.18 gi|134045361|ref|YP_001096847.1| - 0.085 12.7 0.0 0.13 12.1 0.0 1.5 1 1 0 1 1 1 0 Mannose-6-phosphate isomerase AMP-binding PF00501.28 gi|134045362|ref|YP_001096848.1| - 3.3e-77 259.9 0.0 3.9e-77 259.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|134045362|ref|YP_001096848.1| - 3.3e-24 85.6 0.4 1.1e-23 83.9 0.2 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Ku_PK_bind PF08785.11 gi|134045362|ref|YP_001096848.1| - 0.054 13.7 0.4 7.8 6.7 0.0 3.6 4 0 0 4 4 4 0 Ku C terminal domain like DUF4844 PF16133.5 gi|134045362|ref|YP_001096848.1| - 0.077 13.6 1.0 0.19 12.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4844) Fer4_7 PF12838.7 gi|134045363|ref|YP_001096849.1| - 2.6e-08 34.3 9.9 3.9e-08 33.7 9.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134045363|ref|YP_001096849.1| - 6.4e-08 32.6 6.4 8.9e-08 32.2 6.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|134045363|ref|YP_001096849.1| - 4.4e-06 26.3 15.0 0.0065 16.2 4.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134045363|ref|YP_001096849.1| - 5.9e-06 26.4 21.6 9.3e-05 22.5 11.4 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134045363|ref|YP_001096849.1| - 8.3e-06 25.6 14.0 0.0012 18.8 2.0 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|134045363|ref|YP_001096849.1| - 6.2e-05 23.0 25.5 0.0014 18.7 13.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134045363|ref|YP_001096849.1| - 0.0001 22.2 14.7 0.015 15.4 4.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|134045363|ref|YP_001096849.1| - 0.00061 20.3 6.6 0.016 15.7 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|134045363|ref|YP_001096849.1| - 0.0013 19.5 7.7 0.033 15.0 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045363|ref|YP_001096849.1| - 0.0013 19.6 12.9 0.051 14.5 1.6 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|134045363|ref|YP_001096849.1| - 0.0069 16.8 3.7 0.0069 16.8 3.7 2.7 2 1 1 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|134045363|ref|YP_001096849.1| - 0.055 14.0 14.1 5.2 7.7 13.8 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134045363|ref|YP_001096849.1| - 0.15 12.5 14.0 0.23 11.9 3.4 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|134045363|ref|YP_001096849.1| - 0.22 12.6 4.1 0.22 12.6 4.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|134045363|ref|YP_001096849.1| - 0.95 10.2 9.5 0.54 11.0 1.3 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|134045363|ref|YP_001096849.1| - 0.99 9.6 10.0 3.1 8.0 2.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|134045364|ref|YP_001096850.1| - 7.9e-54 182.8 0.0 1e-53 182.5 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|134045364|ref|YP_001096850.1| - 1.8e-27 95.6 0.0 3.4e-27 94.7 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|134045364|ref|YP_001096850.1| - 0.00012 22.0 0.0 0.00021 21.1 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain POR PF01558.18 gi|134045365|ref|YP_001096851.1| - 5.7e-38 130.8 0.0 8.8e-38 130.1 0.0 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|134045365|ref|YP_001096851.1| - 5.6e-24 84.7 0.3 1.1e-23 83.8 0.3 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RraA-like PF03737.15 gi|134045366|ref|YP_001096852.1| - 2.3e-42 144.7 0.3 2.3e-42 144.7 0.3 2.1 2 1 0 2 2 2 1 Aldolase/RraA OMPdecase PF00215.24 gi|134045366|ref|YP_001096852.1| - 3.3e-21 75.9 4.0 1.6e-20 73.7 4.0 2.0 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family HMGL-like PF00682.19 gi|134045366|ref|YP_001096852.1| - 7.8e-05 22.4 0.8 0.13 11.8 0.1 2.3 2 0 0 2 2 2 2 HMGL-like PcrB PF01884.17 gi|134045366|ref|YP_001096852.1| - 0.0001 21.8 2.0 0.00016 21.2 0.3 2.0 2 1 0 2 2 2 1 PcrB family Aldolase PF01081.19 gi|134045366|ref|YP_001096852.1| - 0.00065 19.2 5.0 0.27 10.6 0.8 2.4 1 1 1 2 2 2 2 KDPG and KHG aldolase Ribul_P_3_epim PF00834.19 gi|134045366|ref|YP_001096852.1| - 0.0013 18.2 1.2 0.0047 16.3 1.0 2.0 1 1 1 2 2 2 1 Ribulose-phosphate 3 epimerase family IMPDH PF00478.25 gi|134045366|ref|YP_001096852.1| - 0.045 12.8 10.7 0.17 10.9 3.3 2.9 2 1 1 3 3 3 0 IMP dehydrogenase / GMP reductase domain Response_reg PF00072.24 gi|134045366|ref|YP_001096852.1| - 0.059 13.5 0.3 12 6.1 0.1 2.7 2 0 0 2 2 2 0 Response regulator receiver domain QRPTase_C PF01729.19 gi|134045366|ref|YP_001096852.1| - 0.11 12.3 1.0 0.82 9.4 1.0 2.3 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain DUF1786 PF08735.10 gi|134045367|ref|YP_001096853.1| - 2.9e-83 279.0 0.0 3.4e-83 278.8 0.0 1.0 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) GatD_N PF18195.1 gi|134045367|ref|YP_001096853.1| - 0.025 13.9 1.6 1.3 8.4 0.1 3.1 2 1 1 3 3 3 0 GatD N-terminal domain UPF0489 PF12640.7 gi|134045368|ref|YP_001096854.1| - 3.2e-18 66.6 5.3 8.4e-18 65.2 0.1 2.2 2 0 0 2 2 2 1 UPF0489 domain Arginase PF00491.21 gi|134045368|ref|YP_001096854.1| - 0.087 12.3 0.0 0.095 12.2 0.0 1.2 1 0 0 1 1 1 0 Arginase family Asparaginase PF00710.20 gi|134045369|ref|YP_001096855.1| - 2.3e-60 203.4 1.3 2.5e-60 203.3 0.4 1.5 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|134045369|ref|YP_001096855.1| - 6.3e-32 110.2 0.0 1.9e-29 102.2 0.0 2.5 2 0 0 2 2 2 2 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|134045369|ref|YP_001096855.1| - 3.3e-17 61.5 2.4 3.3e-17 61.5 2.4 1.9 2 0 0 2 2 2 1 GatD N-terminal domain FMN_bind PF04205.14 gi|134045369|ref|YP_001096855.1| - 0.087 13.4 0.7 2.9 8.5 0.0 2.9 2 1 0 2 2 2 0 FMN-binding domain GatB_N PF02934.15 gi|134045370|ref|YP_001096856.1| - 4.6e-73 246.0 0.0 4.8e-72 242.6 0.0 2.4 2 1 0 2 2 2 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|134045370|ref|YP_001096856.1| - 2.3e-28 98.9 3.6 2.3e-28 98.9 3.6 3.2 4 0 0 4 4 4 1 GatB domain GAD PF02938.14 gi|134045370|ref|YP_001096856.1| - 9.7e-23 80.2 0.5 3.4e-22 78.5 0.1 2.2 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|134045370|ref|YP_001096856.1| - 7.1e-07 29.4 0.9 7.1e-07 29.4 0.9 2.4 2 0 0 2 2 2 1 Yqey-like protein HEPN_RiboL-PSP PF18735.1 gi|134045370|ref|YP_001096856.1| - 0.011 15.7 8.6 0.013 15.4 1.4 2.5 2 0 0 2 2 2 0 RiboL-PSP-HEPN Activator-TraM PF11657.8 gi|134045370|ref|YP_001096856.1| - 0.2 11.5 2.9 0.28 11.0 0.2 2.5 2 0 0 2 2 2 0 Transcriptional activator TraM TraB PF01963.17 gi|134045370|ref|YP_001096856.1| - 0.28 11.0 3.3 0.24 11.3 0.7 2.1 2 0 0 2 2 2 0 TraB family DUF4435 PF14491.6 gi|134045370|ref|YP_001096856.1| - 3.3 7.5 10.4 7.1 6.4 0.9 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF4435) UPF0122 PF04297.14 gi|134045370|ref|YP_001096856.1| - 6.4 7.1 13.1 3.5 7.9 0.8 4.0 4 0 0 4 4 4 0 Putative helix-turn-helix protein, YlxM / p13 like DUF87 PF01935.17 gi|134045371|ref|YP_001096857.1| - 2.6e-49 168.4 4.9 4.1e-49 167.7 4.9 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|134045371|ref|YP_001096857.1| - 9.4e-16 57.8 0.9 2.7e-15 56.3 0.2 2.3 2 0 0 2 2 2 1 HAS barrel domain DUF853 PF05872.12 gi|134045371|ref|YP_001096857.1| - 3.3e-09 35.9 0.0 4.4e-05 22.3 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Zot PF05707.12 gi|134045371|ref|YP_001096857.1| - 0.0023 17.6 0.0 0.0076 15.9 0.0 1.9 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) CENP-P PF13096.6 gi|134045371|ref|YP_001096857.1| - 0.0027 17.4 0.2 0.0056 16.4 0.2 1.5 1 0 0 1 1 1 1 CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P AAA_19 PF13245.6 gi|134045371|ref|YP_001096857.1| - 0.0053 17.1 0.0 1.7 8.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain TrwB_AAD_bind PF10412.9 gi|134045371|ref|YP_001096857.1| - 0.0058 15.6 0.0 0.019 13.9 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain CxxCxxCC PF03692.15 gi|134045372|ref|YP_001096858.1| - 1e-08 35.7 4.1 1e-08 35.7 4.1 2.3 2 1 0 2 2 2 1 Putative zinc- or iron-chelating domain Phage_int_SAM_4 PF13495.6 gi|134045372|ref|YP_001096858.1| - 0.23 12.0 3.7 3.5 8.2 3.7 2.5 2 1 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Ter PF05472.11 gi|134045373|ref|YP_001096859.1| - 0.15 11.1 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 DNA replication terminus site-binding protein (Ter protein) zf-ribbon_3 PF13248.6 gi|134045374|ref|YP_001096860.1| - 3.1e-17 61.3 22.4 3e-07 29.6 4.0 3.2 3 0 0 3 3 3 3 zinc-ribbon domain DZR PF12773.7 gi|134045374|ref|YP_001096860.1| - 1.7e-13 50.4 34.5 7.8e-08 32.2 13.6 2.3 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|134045374|ref|YP_001096860.1| - 3.2e-09 37.4 13.5 0.031 15.0 0.9 3.2 3 0 0 3 3 3 3 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|134045374|ref|YP_001096860.1| - 4.1e-07 29.5 21.8 0.00031 20.4 0.4 3.4 3 0 0 3 3 3 3 zinc-ribbon domain UPF0547 PF10571.9 gi|134045374|ref|YP_001096860.1| - 0.0033 17.5 1.2 0.0033 17.5 1.2 3.6 3 1 0 3 3 3 1 Uncharacterised protein family UPF0547 zf-MYND PF01753.18 gi|134045374|ref|YP_001096860.1| - 0.014 15.5 15.8 0.2 11.8 2.4 3.4 3 1 0 3 3 3 0 MYND finger TackOD1 PF18551.1 gi|134045374|ref|YP_001096860.1| - 0.017 14.8 0.3 0.017 14.8 0.3 2.8 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|134045374|ref|YP_001096860.1| - 0.062 13.4 21.8 2.6 8.2 7.3 4.3 2 2 0 2 2 2 0 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|134045374|ref|YP_001096860.1| - 0.12 12.4 20.3 0.7 9.9 1.7 3.9 1 1 3 4 4 4 0 Putative zinc finger motif, C2HC5-type Zn_ribbon_recom PF13408.6 gi|134045374|ref|YP_001096860.1| - 0.54 10.8 15.0 6 7.5 0.3 3.7 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain OrfB_Zn_ribbon PF07282.11 gi|134045374|ref|YP_001096860.1| - 1 9.3 18.1 2.3 8.2 2.1 4.1 2 1 2 4 4 4 0 Putative transposase DNA-binding domain DUF678 PF05077.12 gi|134045374|ref|YP_001096860.1| - 2.3 8.4 10.7 10 6.3 0.1 4.1 4 1 0 4 4 4 0 Protein of unknown function (DUF678) RecO_C PF02565.15 gi|134045374|ref|YP_001096860.1| - 3.8 7.3 6.6 3.6 7.4 0.5 2.4 1 1 1 2 2 2 0 Recombination protein O C terminal C1_1 PF00130.22 gi|134045374|ref|YP_001096860.1| - 4.5 7.2 21.1 2.7 8.0 7.2 3.9 1 1 3 4 4 4 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF1451 PF07295.11 gi|134045374|ref|YP_001096860.1| - 4.5 7.3 20.8 1.1 9.2 4.9 3.5 2 2 2 4 4 4 0 Zinc-ribbon containing domain Zn_ribbon_SprT PF17283.2 gi|134045374|ref|YP_001096860.1| - 5.2 7.1 19.7 4.1 7.4 1.0 4.6 3 2 1 4 4 4 0 SprT-like zinc ribbon domain zf-C3HC4_3 PF13920.6 gi|134045374|ref|YP_001096860.1| - 5.7 6.9 20.1 6.4 6.7 1.6 3.7 2 2 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-C4pol PF14260.6 gi|134045374|ref|YP_001096860.1| - 6.4 7.3 14.7 72 4.0 7.9 2.7 1 1 2 3 3 3 0 C4-type zinc-finger of DNA polymerase delta NMT1_2 PF13379.6 gi|134045375|ref|YP_001096861.1| - 1.2e-27 97.2 0.2 2.1e-27 96.4 0.2 1.4 1 1 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|134045375|ref|YP_001096861.1| - 2.2e-05 24.5 0.0 0.00098 19.1 0.0 2.2 2 0 0 2 2 2 2 NMT1/THI5 like CbiA PF01656.23 gi|134045376|ref|YP_001096862.1| - 0.0001 22.4 0.0 0.00011 22.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|134045376|ref|YP_001096862.1| - 0.18 11.3 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ Pyr_redox_2 PF07992.14 gi|134045377|ref|YP_001096863.1| - 1.1e-60 205.4 5.6 1.1e-60 205.4 5.6 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|134045377|ref|YP_001096863.1| - 1.2e-23 83.5 5.8 3.4e-19 69.2 0.7 4.1 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|134045377|ref|YP_001096863.1| - 2.3e-22 79.3 1.0 8.8e-21 74.2 0.2 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|134045377|ref|YP_001096863.1| - 5.8e-16 58.6 5.9 1e-13 51.3 1.6 3.0 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|134045377|ref|YP_001096863.1| - 1.3e-09 37.3 5.4 0.041 12.6 0.0 4.4 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.6 gi|134045377|ref|YP_001096863.1| - 6.2e-08 32.8 0.0 0.00063 19.9 0.0 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|134045377|ref|YP_001096863.1| - 1.7e-07 30.7 6.9 0.0021 17.2 0.1 4.7 3 2 1 5 5 5 2 FAD binding domain DAO PF01266.24 gi|134045377|ref|YP_001096863.1| - 4.5e-07 29.8 9.0 0.051 13.1 0.0 4.2 3 1 1 4 4 4 3 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|134045377|ref|YP_001096863.1| - 6.9e-05 22.1 1.5 0.24 10.4 0.0 3.2 2 1 1 3 3 3 2 Lycopene cyclase protein Thi4 PF01946.17 gi|134045377|ref|YP_001096863.1| - 7.7e-05 22.0 3.0 0.0051 16.1 0.1 3.5 3 0 0 3 3 3 1 Thi4 family TrkA_N PF02254.18 gi|134045377|ref|YP_001096863.1| - 0.00048 20.4 1.1 0.38 11.0 0.1 3.2 2 1 0 2 2 2 1 TrkA-N domain ApbA PF02558.16 gi|134045377|ref|YP_001096863.1| - 0.00064 19.4 0.7 1.3 8.6 0.2 3.2 3 0 0 3 3 3 2 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|134045377|ref|YP_001096863.1| - 0.0008 19.8 0.8 1.4 9.4 0.1 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding K_oxygenase PF13434.6 gi|134045377|ref|YP_001096863.1| - 0.0022 17.2 0.0 0.086 12.0 0.0 2.2 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|134045377|ref|YP_001096863.1| - 0.0041 17.1 0.6 5.6 6.9 0.0 3.4 3 1 1 4 4 4 1 FAD-NAD(P)-binding PALP PF00291.25 gi|134045377|ref|YP_001096863.1| - 0.0061 16.0 0.1 0.062 12.7 0.0 2.2 1 1 1 2 2 2 1 Pyridoxal-phosphate dependent enzyme Trp_halogenase PF04820.14 gi|134045377|ref|YP_001096863.1| - 0.017 14.0 3.3 0.13 11.0 0.0 2.7 3 0 0 3 3 3 0 Tryptophan halogenase FAD_oxidored PF12831.7 gi|134045377|ref|YP_001096863.1| - 0.018 14.4 3.1 1.3 8.3 0.0 2.8 2 1 1 3 3 3 0 FAD dependent oxidoreductase Sigma70_r1_1 PF03979.14 gi|134045377|ref|YP_001096863.1| - 0.029 14.4 2.3 0.053 13.6 0.1 2.3 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 GIDA PF01134.22 gi|134045377|ref|YP_001096863.1| - 0.067 12.3 13.0 1.6 7.7 0.4 4.1 3 1 1 4 4 4 0 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|134045377|ref|YP_001096863.1| - 0.11 11.8 0.7 14 4.8 0.1 2.6 3 0 0 3 3 3 0 FAD binding domain LpxI_N PF17930.1 gi|134045377|ref|YP_001096863.1| - 0.18 11.7 1.0 0.97 9.3 0.5 2.4 2 1 0 2 2 1 0 LpxI N-terminal domain GFO_IDH_MocA PF01408.22 gi|134045377|ref|YP_001096863.1| - 0.19 12.5 1.4 37 5.2 0.0 3.2 3 1 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold ALAD PF00490.21 gi|134045378|ref|YP_001096864.1| - 1e-145 484.9 0.0 1.1e-145 484.7 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase NERD PF08378.11 gi|134045379|ref|YP_001096865.1| - 5.9e-17 62.1 1.2 2e-16 60.4 0.5 1.9 1 1 1 2 2 2 1 Nuclease-related domain DNA_ligase_ZBD PF03119.16 gi|134045379|ref|YP_001096865.1| - 0.0028 17.6 2.3 0.0051 16.8 2.3 1.4 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.11 gi|134045379|ref|YP_001096865.1| - 0.0039 16.8 0.5 0.0065 16.1 0.5 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|134045379|ref|YP_001096865.1| - 0.071 12.9 1.2 0.071 12.9 1.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|134045379|ref|YP_001096865.1| - 0.14 11.7 1.1 0.27 10.9 1.1 1.4 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger OrfB_Zn_ribbon PF07282.11 gi|134045379|ref|YP_001096865.1| - 3.4 7.7 9.7 2.4 8.2 2.3 3.4 4 0 0 4 4 4 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|134045379|ref|YP_001096865.1| - 4.7 6.7 7.5 0.22 11.0 0.9 2.2 2 1 0 2 2 2 0 zinc-ribbon domain HEPN PF05168.14 gi|134045380|ref|YP_001096866.1| - 0.0045 17.1 0.2 0.0089 16.2 0.2 1.6 1 0 0 1 1 1 1 HEPN domain tRNA_synthFbeta PF17759.1 gi|134045381|ref|YP_001096867.1| - 3.1e-44 151.0 0.0 4.4e-44 150.5 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|134045381|ref|YP_001096867.1| - 1e-16 60.9 1.7 2.2e-15 56.7 0.1 3.3 4 0 0 4 4 4 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|134045381|ref|YP_001096867.1| - 1.1e-14 54.5 0.1 2e-14 53.6 0.1 1.4 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|134045381|ref|YP_001096867.1| - 4e-12 46.2 0.2 2e-09 37.5 0.0 3.0 2 0 0 2 2 2 2 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|134045381|ref|YP_001096867.1| - 1.6e-07 31.1 0.1 2.7e-07 30.3 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) DUF2067 PF09840.9 gi|134045381|ref|YP_001096867.1| - 0.014 15.0 0.8 0.033 13.7 0.2 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) AIRS_C PF02769.22 gi|134045382|ref|YP_001096868.1| - 3.6e-27 95.4 0.0 7.3e-27 94.4 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|134045382|ref|YP_001096868.1| - 6.6e-13 49.1 0.4 1.1e-12 48.5 0.4 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF89 PF01937.19 gi|134045383|ref|YP_001096869.1| - 1.9e-62 211.3 1.9 2.2e-62 211.1 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 CBS PF00571.28 gi|134045384|ref|YP_001096870.1| - 1.2e-44 150.5 16.6 1.4e-12 47.9 0.1 4.1 4 0 0 4 4 4 4 CBS domain FAD_binding_4 PF01565.23 gi|134045384|ref|YP_001096870.1| - 0.13 12.0 0.1 13 5.5 0.0 2.5 2 0 0 2 2 2 0 FAD binding domain CBS PF00571.28 gi|134045385|ref|YP_001096871.1| - 7.9e-28 96.7 3.1 5.1e-13 49.3 0.2 2.3 2 0 0 2 2 2 2 CBS domain zf-RRN7 PF11781.8 gi|134045385|ref|YP_001096871.1| - 1.2e-05 24.9 2.1 1.9e-05 24.3 2.1 1.2 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 C1_2 PF03107.16 gi|134045385|ref|YP_001096871.1| - 0.0062 16.8 1.0 0.0096 16.2 1.0 1.2 1 0 0 1 1 1 1 C1 domain TF_Zn_Ribbon PF08271.12 gi|134045385|ref|YP_001096871.1| - 0.037 13.6 4.2 0.07 12.7 4.2 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding ADK_lid PF05191.14 gi|134045385|ref|YP_001096871.1| - 0.08 12.9 1.2 6.3 6.9 0.1 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid Gin PF10764.9 gi|134045385|ref|YP_001096871.1| - 0.26 11.3 4.3 0.77 9.8 4.3 1.8 1 0 0 1 1 1 0 Inhibitor of sigma-G Gin zf-HIT PF04438.16 gi|134045385|ref|YP_001096871.1| - 0.52 10.2 4.9 1.5 8.8 4.9 1.7 1 1 0 1 1 1 0 HIT zinc finger zf-CCHC_2 PF13696.6 gi|134045385|ref|YP_001096871.1| - 0.75 9.7 3.1 2.8 7.8 0.7 2.1 2 0 0 2 2 2 0 Zinc knuckle PTPS PF01242.19 gi|134045386|ref|YP_001096872.1| - 8.7e-26 90.3 0.0 1e-25 90.1 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase GXGXG PF01493.19 gi|134045387|ref|YP_001096873.1| - 1.2e-10 41.3 19.1 7.5e-10 38.7 19.3 2.1 1 1 0 1 1 1 1 GXGXG motif Toast_rack_N PF17115.5 gi|134045387|ref|YP_001096873.1| - 0.15 12.4 1.7 6.8 7.1 0.1 3.5 2 1 1 3 3 3 0 N-terminal domain of toast_rack, DUF2154 Amidohydro_3 PF07969.11 gi|134045388|ref|YP_001096874.1| - 6.3e-75 253.4 0.0 9.9e-75 252.8 0.0 1.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|134045388|ref|YP_001096874.1| - 0.00017 21.0 0.0 0.064 12.6 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Molydop_binding PF01568.21 gi|134045389|ref|YP_001096875.1| - 3.6e-22 78.5 0.0 4.4e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|134045389|ref|YP_001096875.1| - 0.0069 16.5 0.0 0.024 14.8 0.0 1.8 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain SH3_2 PF07653.17 gi|134045389|ref|YP_001096875.1| - 0.055 13.1 0.0 0.078 12.7 0.0 1.3 1 0 0 1 1 1 0 Variant SH3 domain Fer4 PF00037.27 gi|134045390|ref|YP_001096876.1| - 1.6e-17 62.5 17.6 9e-09 34.8 4.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|134045390|ref|YP_001096876.1| - 1.4e-12 47.5 20.3 3.5e-09 36.6 11.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045390|ref|YP_001096876.1| - 2e-12 47.5 22.1 1.3e-09 38.5 11.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134045390|ref|YP_001096876.1| - 1.2e-11 44.1 15.0 3.8e-06 26.7 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134045390|ref|YP_001096876.1| - 8.6e-11 41.8 5.2 1.4e-10 41.1 5.2 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045390|ref|YP_001096876.1| - 1e-09 39.2 9.5 0.00011 23.1 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|134045390|ref|YP_001096876.1| - 6.8e-09 35.3 13.3 0.00034 20.6 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134045390|ref|YP_001096876.1| - 1.3e-08 34.8 11.0 0.00013 22.1 1.4 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134045390|ref|YP_001096876.1| - 1.9e-06 28.2 10.3 6.5e-06 26.5 10.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|134045390|ref|YP_001096876.1| - 2.2e-06 28.2 23.4 0.0037 18.1 9.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|134045390|ref|YP_001096876.1| - 5e-06 26.6 13.0 0.0012 19.2 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|134045390|ref|YP_001096876.1| - 2.7e-05 24.9 6.4 0.025 15.4 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045390|ref|YP_001096876.1| - 0.00012 22.5 10.4 0.0012 19.4 10.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134045390|ref|YP_001096876.1| - 0.00025 21.7 11.9 0.057 14.2 0.2 3.1 2 1 1 3 3 3 3 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|134045390|ref|YP_001096876.1| - 0.018 15.6 15.3 0.57 10.8 3.6 3.0 2 2 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I MTHFR_C PF12225.8 gi|134045390|ref|YP_001096876.1| - 0.033 13.8 3.7 0.24 11.0 0.3 2.2 2 0 0 2 2 2 0 Methylene-tetrahydrofolate reductase C terminal Fer4_18 PF13746.6 gi|134045390|ref|YP_001096876.1| - 5.4 7.2 12.3 4.7 7.5 1.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|134045391|ref|YP_001096877.1| - 6.3e-47 155.6 98.6 1.3e-07 31.1 4.2 8.4 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134045391|ref|YP_001096877.1| - 2.4e-33 114.5 69.2 4.8e-10 39.9 7.6 5.4 4 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045391|ref|YP_001096877.1| - 1.9e-27 96.0 66.2 0.00096 20.0 0.5 8.2 8 0 0 8 8 8 8 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|134045391|ref|YP_001096877.1| - 5.4e-27 92.7 96.8 0.00034 20.5 4.6 8.5 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134045391|ref|YP_001096877.1| - 4.4e-24 83.1 78.4 0.00029 20.8 3.1 8.5 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134045391|ref|YP_001096877.1| - 1.3e-23 82.9 76.9 1.8e-05 24.8 14.3 5.9 1 1 7 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134045391|ref|YP_001096877.1| - 5e-23 81.0 84.8 5.5e-06 26.4 17.0 6.1 2 1 5 8 8 8 8 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045391|ref|YP_001096877.1| - 3.2e-22 78.4 84.3 7.5e-06 26.0 12.7 6.9 2 2 5 7 7 7 7 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045391|ref|YP_001096877.1| - 5.6e-10 39.6 79.2 0.022 15.3 14.6 7.1 4 3 3 7 7 7 7 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134045391|ref|YP_001096877.1| - 2.5e-09 37.4 84.0 0.028 14.9 1.8 6.7 2 2 5 8 8 8 7 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134045391|ref|YP_001096877.1| - 2.6e-09 36.9 93.2 0.0063 16.9 1.5 8.5 8 1 0 8 8 8 7 4Fe-4S binding domain Fer4_22 PF17179.4 gi|134045391|ref|YP_001096877.1| - 3.4e-05 24.6 69.2 0.085 13.7 1.1 8.1 6 2 4 10 10 10 4 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134045391|ref|YP_001096877.1| - 0.016 16.0 70.6 0.73 10.6 0.3 9.4 8 2 0 8 8 8 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|134045391|ref|YP_001096877.1| - 0.042 14.8 5.1 0.042 14.8 5.1 8.6 9 0 0 9 9 8 0 4Fe-4S binding domain Fer4 PF00037.27 gi|134045392|ref|YP_001096878.1| - 6.1e-11 41.7 18.5 2.4e-07 30.3 5.8 2.8 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134045392|ref|YP_001096878.1| - 4.3e-07 29.7 18.0 0.00015 21.7 5.6 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134045392|ref|YP_001096878.1| - 2.5e-06 28.0 11.1 0.00016 22.2 12.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045392|ref|YP_001096878.1| - 6.9e-06 26.1 11.9 1.1e-05 25.5 11.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134045392|ref|YP_001096878.1| - 1.1e-05 25.5 14.4 2e-05 24.6 14.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134045392|ref|YP_001096878.1| - 2e-05 24.4 15.5 0.0099 15.9 5.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|134045392|ref|YP_001096878.1| - 6.5e-05 23.0 16.0 0.00045 20.3 16.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045392|ref|YP_001096878.1| - 0.00028 21.4 7.4 0.09 13.3 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain HTH_3 PF01381.22 gi|134045392|ref|YP_001096878.1| - 0.0039 17.2 0.1 0.009 16.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|134045392|ref|YP_001096878.1| - 0.0054 16.7 0.1 0.012 15.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fer4_15 PF13459.6 gi|134045392|ref|YP_001096878.1| - 0.0066 17.2 12.1 0.065 14.0 3.1 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|134045392|ref|YP_001096878.1| - 0.0096 16.7 7.4 0.14 13.0 0.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134045392|ref|YP_001096878.1| - 0.0097 16.3 10.0 0.67 10.4 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain HTH_23 PF13384.6 gi|134045392|ref|YP_001096878.1| - 0.013 15.3 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Fer4_19 PF06902.11 gi|134045392|ref|YP_001096878.1| - 0.035 14.2 6.6 0.062 13.4 6.6 1.4 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.6 gi|134045392|ref|YP_001096878.1| - 0.046 14.3 15.4 0.49 11.0 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|134045392|ref|YP_001096878.1| - 0.44 11.5 15.8 1.5 9.8 6.4 2.6 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|134045392|ref|YP_001096878.1| - 2 9.1 19.2 4.2 8.1 3.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain ThiF PF00899.21 gi|134045393|ref|YP_001096879.1| - 1.3e-09 37.8 0.0 1.4e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 ThiF family NadA PF02445.16 gi|134045394|ref|YP_001096880.1| - 1.1e-102 343.3 3.2 1.2e-102 343.1 3.2 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Asparaginase PF00710.20 gi|134045394|ref|YP_001096880.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 Asparaginase, N-terminal SepSecS PF05889.13 gi|134045396|ref|YP_001096882.1| - 6.6e-33 114.0 0.1 9.6e-33 113.4 0.1 1.3 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|134045396|ref|YP_001096882.1| - 2.1e-16 59.9 0.0 2.9e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|134045396|ref|YP_001096882.1| - 0.00044 19.1 0.0 0.00063 18.6 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Aminotran_1_2 PF00155.21 gi|134045396|ref|YP_001096882.1| - 0.001 18.3 0.0 0.0014 17.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|134045396|ref|YP_001096882.1| - 0.018 14.4 0.0 0.024 13.9 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|134045396|ref|YP_001096882.1| - 0.049 12.9 0.0 0.085 12.1 0.0 1.4 1 1 0 1 1 1 0 Beta-eliminating lyase NAD_synthase PF02540.17 gi|134045397|ref|YP_001096883.1| - 4e-07 29.4 0.5 3e-06 26.5 0.0 2.3 2 1 1 3 3 3 1 NAD synthase QueC PF06508.13 gi|134045397|ref|YP_001096883.1| - 2.7e-06 27.0 0.4 1.9e-05 24.3 0.1 2.1 2 1 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|134045397|ref|YP_001096883.1| - 1.5e-05 24.8 0.0 3.5e-05 23.7 0.0 1.6 2 0 0 2 2 2 1 PP-loop family PAPS_reduct PF01507.19 gi|134045397|ref|YP_001096883.1| - 0.011 15.7 0.0 0.018 15.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.19 gi|134045397|ref|YP_001096883.1| - 0.013 14.8 0.3 0.072 12.4 0.3 2.1 1 1 0 1 1 1 0 Arginosuccinate synthase Asn_synthase PF00733.21 gi|134045397|ref|YP_001096883.1| - 0.016 14.9 0.0 0.038 13.7 0.0 1.6 1 0 0 1 1 1 0 Asparagine synthase DnaB_C PF03796.15 gi|134045397|ref|YP_001096883.1| - 0.07 12.5 0.7 0.52 9.6 0.0 2.2 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain Radical_SAM PF04055.21 gi|134045398|ref|YP_001096884.1| - 6.3e-15 56.0 0.5 1.6e-14 54.6 0.3 1.7 2 1 0 2 2 2 1 Radical SAM superfamily BATS PF06968.13 gi|134045398|ref|YP_001096884.1| - 1.7e-13 50.5 0.0 3.1e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain DUF1611 PF07755.11 gi|134045398|ref|YP_001096884.1| - 0.17 11.1 0.0 0.32 10.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain DUF1523 PF07509.11 gi|134045399|ref|YP_001096885.1| - 0.043 13.2 0.0 0.043 13.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1523) zf-UBP_var PF17807.1 gi|134045400|ref|YP_001096886.1| - 0.14 11.9 0.5 17 5.3 0.0 2.5 2 0 0 2 2 2 0 Variant UBP zinc finger MoaE PF02391.17 gi|134045401|ref|YP_001096887.1| - 1.1e-30 106.2 0.1 1.2e-30 106.0 0.1 1.0 1 0 0 1 1 1 1 MoaE protein ThiF PF00899.21 gi|134045402|ref|YP_001096888.1| - 1.1e-60 205.0 0.0 1.3e-60 204.7 0.0 1.0 1 0 0 1 1 1 1 ThiF family UDPG_MGDP_dh_N PF03721.14 gi|134045402|ref|YP_001096888.1| - 0.0015 18.2 1.9 0.0088 15.6 1.5 2.3 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SLATT_fungal PF18142.1 gi|134045402|ref|YP_001096888.1| - 0.0056 16.7 0.0 0.0089 16.0 0.0 1.4 1 0 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain ApbA PF02558.16 gi|134045402|ref|YP_001096888.1| - 0.0089 15.7 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|134045402|ref|YP_001096888.1| - 0.037 13.4 0.2 0.069 12.5 0.1 1.5 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|134045402|ref|YP_001096888.1| - 0.048 13.9 1.0 0.13 12.6 1.0 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|134045402|ref|YP_001096888.1| - 0.058 13.3 0.1 0.081 12.8 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ldh_1_N PF00056.23 gi|134045402|ref|YP_001096888.1| - 0.093 12.8 1.5 0.29 11.2 1.5 1.8 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain FdhD-NarQ PF02634.15 gi|134045403|ref|YP_001096889.1| - 2e-53 181.5 0.0 4.6e-45 154.1 0.0 2.0 1 1 1 2 2 2 2 FdhD/NarQ family PAPS_reduct PF01507.19 gi|134045404|ref|YP_001096890.1| - 1.1e-09 38.6 0.1 1.9e-09 37.8 0.1 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|134045404|ref|YP_001096890.1| - 9.1e-06 25.4 0.3 3.8e-05 23.4 0.1 2.1 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|134045404|ref|YP_001096890.1| - 2.6e-05 23.8 0.0 6.9e-05 22.4 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|134045404|ref|YP_001096890.1| - 6.6e-05 22.2 0.0 0.00013 21.2 0.0 1.5 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.20 gi|134045404|ref|YP_001096890.1| - 0.00012 21.9 0.0 0.00021 21.1 0.0 1.4 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|134045404|ref|YP_001096890.1| - 0.00073 18.4 0.1 0.0013 17.6 0.1 1.5 1 1 0 1 1 1 1 tRNA methyl transferase Diphthami_syn_2 PF01902.17 gi|134045404|ref|YP_001096890.1| - 0.072 12.6 1.2 0.14 11.6 0.0 2.2 3 0 0 3 3 3 0 Diphthamide synthase Asn_synthase PF00733.21 gi|134045404|ref|YP_001096890.1| - 0.092 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase PglD_N PF17836.1 gi|134045405|ref|YP_001096891.1| - 0.022 15.4 0.5 0.067 13.8 0.1 1.9 2 0 0 2 2 2 0 PglD N-terminal domain NTP_transf_2 PF01909.23 gi|134045406|ref|YP_001096892.1| - 4.6e-05 23.6 0.3 0.00025 21.3 0.0 2.3 2 0 0 2 2 2 1 Nucleotidyltransferase domain FB_lectin PF07367.11 gi|134045406|ref|YP_001096892.1| - 0.0017 18.3 0.5 0.0087 16.0 0.0 2.3 1 1 0 2 2 2 1 Fungal fruit body lectin FUN14 PF04930.15 gi|134045407|ref|YP_001096893.1| - 2.7e-05 24.5 15.6 0.00013 22.3 15.6 1.9 1 1 0 1 1 1 1 FUN14 family Gemini_AL3 PF01407.17 gi|134045407|ref|YP_001096893.1| - 0.17 11.8 0.1 0.2 11.5 0.1 1.2 1 0 0 1 1 1 0 Geminivirus AL3 protein TP_methylase PF00590.20 gi|134045409|ref|YP_001096895.1| - 3e-31 109.0 0.0 3.4e-31 108.8 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases FAD_binding_3 PF01494.19 gi|134045410|ref|YP_001096896.1| - 8.2e-10 38.4 0.0 0.00023 20.6 0.0 2.8 2 1 0 2 2 2 2 FAD binding domain Thi4 PF01946.17 gi|134045410|ref|YP_001096896.1| - 0.00044 19.6 0.1 0.00058 19.2 0.1 1.4 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|134045410|ref|YP_001096896.1| - 0.00093 18.0 0.2 0.0021 16.9 0.0 1.6 2 0 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.14 gi|134045410|ref|YP_001096896.1| - 0.0038 16.1 0.0 0.47 9.3 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|134045410|ref|YP_001096896.1| - 0.0069 15.7 0.2 0.017 14.3 0.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|134045410|ref|YP_001096896.1| - 0.014 14.4 0.0 1.1 8.2 0.0 2.4 2 1 0 2 2 2 0 Lycopene cyclase protein MgtE_N PF03448.17 gi|134045410|ref|YP_001096896.1| - 0.17 12.5 0.0 0.41 11.3 0.0 1.6 1 0 0 1 1 1 0 MgtE intracellular N domain Pyr_redox_3 PF13738.6 gi|134045410|ref|YP_001096896.1| - 0.2 10.9 3.7 0.082 12.1 0.4 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase SBP_bac_3 PF00497.20 gi|134045411|ref|YP_001096897.1| - 2.3e-48 164.6 0.2 2.5e-48 164.4 0.2 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|134045411|ref|YP_001096897.1| - 1.6e-06 27.9 0.1 0.00011 21.8 0.1 2.8 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Lig_chan-Glu_bd PF10613.9 gi|134045411|ref|YP_001096897.1| - 0.00025 21.2 0.1 0.017 15.3 0.1 2.6 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|134045411|ref|YP_001096897.1| - 0.011 15.7 0.0 0.14 12.1 0.0 2.2 1 1 1 2 2 2 0 NMT1/THI5 like DUF2114 PF09887.9 gi|134045412|ref|YP_001096898.1| - 3.2e-217 721.4 5.5 3.7e-217 721.2 5.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Rad51 PF08423.11 gi|134045413|ref|YP_001096899.1| - 4.1e-81 272.0 0.1 5.1e-81 271.7 0.1 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|134045413|ref|YP_001096899.1| - 1e-13 51.6 0.5 2.7e-13 50.3 0.5 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|134045413|ref|YP_001096899.1| - 5.3e-10 39.2 0.6 3.1e-08 33.4 0.6 2.1 1 1 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|134045413|ref|YP_001096899.1| - 2e-09 37.3 0.0 2.9e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|134045413|ref|YP_001096899.1| - 2.5e-07 30.3 0.6 1.5e-06 27.8 0.6 2.2 1 1 0 1 1 1 1 KaiC HHH PF00633.23 gi|134045413|ref|YP_001096899.1| - 6.2e-06 25.8 0.7 0.0033 17.2 0.1 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|134045413|ref|YP_001096899.1| - 0.00036 20.7 0.0 0.88 9.9 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|134045413|ref|YP_001096899.1| - 0.00097 18.9 0.0 0.013 15.3 0.0 2.8 2 1 1 3 3 2 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|134045413|ref|YP_001096899.1| - 0.0017 18.5 0.0 0.045 14.0 0.0 2.6 1 1 1 2 2 2 1 Pathogenicity locus IMS_HHH PF11798.8 gi|134045413|ref|YP_001096899.1| - 0.0021 18.3 0.4 0.028 14.8 0.0 2.8 3 0 0 3 3 3 1 IMS family HHH motif DnaB_C PF03796.15 gi|134045413|ref|YP_001096899.1| - 0.0049 16.2 0.3 0.084 12.2 0.3 2.1 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain HHH_2 PF12826.7 gi|134045413|ref|YP_001096899.1| - 0.0065 16.6 0.2 0.019 15.1 0.1 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|134045413|ref|YP_001096899.1| - 0.015 15.7 0.1 0.59 10.5 0.0 2.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|134045413|ref|YP_001096899.1| - 0.015 15.9 0.3 2.5 8.8 0.1 2.9 2 1 0 2 2 1 0 5'-3' exonuclease, C-terminal SAM fold BAF PF02961.14 gi|134045413|ref|YP_001096899.1| - 0.015 15.7 0.4 6 7.4 0.0 3.8 4 0 0 4 4 4 0 Barrier to autointegration factor AAA_33 PF13671.6 gi|134045413|ref|YP_001096899.1| - 0.028 14.6 0.0 0.079 13.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain CobU PF02283.16 gi|134045413|ref|YP_001096899.1| - 0.05 13.2 0.1 0.37 10.3 0.0 2.3 2 1 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Transposase_20 PF02371.16 gi|134045413|ref|YP_001096899.1| - 0.064 13.6 0.0 19 5.6 0.0 2.4 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family Bac_DNA_binding PF00216.21 gi|134045413|ref|YP_001096899.1| - 0.075 13.2 0.3 2.6 8.3 0.0 2.8 1 1 1 2 2 2 0 Bacterial DNA-binding protein PAXNEB PF05625.11 gi|134045413|ref|YP_001096899.1| - 0.082 12.0 0.0 0.46 9.6 0.0 1.9 2 0 0 2 2 2 0 PAXNEB protein Methyltransf_31 PF13847.6 gi|134045414|ref|YP_001096900.1| - 8.5e-10 38.6 0.2 1e-09 38.3 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|134045414|ref|YP_001096900.1| - 1e-08 35.7 0.0 2.1e-08 34.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|134045414|ref|YP_001096900.1| - 5.8e-07 29.2 0.0 9.9e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|134045414|ref|YP_001096900.1| - 7.4e-07 29.0 0.1 9.9e-07 28.6 0.1 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PCMT PF01135.19 gi|134045414|ref|YP_001096900.1| - 8.9e-07 28.9 0.0 4.7e-06 26.5 0.0 1.9 1 1 1 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.10 gi|134045414|ref|YP_001096900.1| - 1.2e-06 28.2 0.8 1.7e-06 27.7 0.8 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|134045414|ref|YP_001096900.1| - 1.3e-05 25.2 0.3 1.7e-05 24.8 0.3 1.1 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|134045414|ref|YP_001096900.1| - 1.7e-05 24.1 0.2 2.3e-05 23.6 0.2 1.2 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Met_10 PF02475.16 gi|134045414|ref|YP_001096900.1| - 2.2e-05 24.3 0.2 3.7e-05 23.6 0.1 1.4 1 1 0 1 1 1 1 Met-10+ like-protein CMAS PF02353.20 gi|134045414|ref|YP_001096900.1| - 2.4e-05 23.8 0.0 4.6e-05 22.8 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.12 gi|134045414|ref|YP_001096900.1| - 4.2e-05 24.1 0.0 7.6e-05 23.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|134045414|ref|YP_001096900.1| - 6.3e-05 22.5 0.2 0.0003 20.3 0.0 2.0 2 0 0 2 2 2 1 Putative methyltransferase PrmA PF06325.13 gi|134045414|ref|YP_001096900.1| - 0.00028 20.4 0.9 0.00067 19.1 0.9 1.7 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.12 gi|134045414|ref|YP_001096900.1| - 0.00028 21.6 0.1 0.00046 20.9 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|134045414|ref|YP_001096900.1| - 0.00054 19.7 0.0 0.00093 18.9 0.0 1.4 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_23 PF13489.6 gi|134045414|ref|YP_001096900.1| - 0.00092 19.1 0.0 0.001 18.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF1889 PF08986.10 gi|134045414|ref|YP_001096900.1| - 0.02 15.3 0.1 0.031 14.7 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1889) TehB PF03848.14 gi|134045414|ref|YP_001096900.1| - 0.028 13.8 0.7 0.039 13.4 0.5 1.3 1 1 0 1 1 1 0 Tellurite resistance protein TehB UPF0020 PF01170.18 gi|134045414|ref|YP_001096900.1| - 0.15 11.7 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Phosphorylase PF00343.20 gi|134045415|ref|YP_001096901.1| - 4.5e-16 58.3 2.7 1.5e-12 46.7 0.7 3.1 2 1 0 2 2 2 2 Carbohydrate phosphorylase UPF0515 PF15135.6 gi|134045415|ref|YP_001096901.1| - 0.0034 16.8 0.2 0.0052 16.2 0.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein UPF0515 DUF3417 PF11897.8 gi|134045415|ref|YP_001096901.1| - 0.47 10.9 5.8 1.4 9.4 0.0 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF3417) Helicase_C_2 PF13307.6 gi|134045416|ref|YP_001096902.1| - 1e-25 90.9 0.0 7.1e-25 88.1 0.0 2.1 2 0 0 2 2 2 1 Helicase C-terminal domain ResIII PF04851.15 gi|134045416|ref|YP_001096902.1| - 6.5e-10 39.3 0.2 3.1e-09 37.0 0.1 2.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|134045416|ref|YP_001096902.1| - 1.3e-09 38.1 1.3 9.1e-07 28.8 0.0 3.5 3 1 1 4 4 4 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|134045416|ref|YP_001096902.1| - 6e-06 26.6 0.0 0.0021 18.4 0.0 2.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain zf-FPG_IleRS PF06827.14 gi|134045416|ref|YP_001096902.1| - 0.00041 20.1 1.3 0.0012 18.6 0.6 2.2 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS SecA_DEAD PF07517.14 gi|134045416|ref|YP_001096902.1| - 0.014 14.7 1.4 0.049 12.9 0.1 2.5 2 2 0 2 2 2 0 SecA DEAD-like domain AAA_22 PF13401.6 gi|134045416|ref|YP_001096902.1| - 0.022 15.0 0.0 9 6.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF3447 PF11929.8 gi|134045416|ref|YP_001096902.1| - 0.078 13.0 4.0 0.25 11.3 4.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3447) DEAD_2 PF06733.15 gi|134045416|ref|YP_001096902.1| - 0.1 12.2 8.4 0.36 10.4 8.4 1.9 1 1 0 1 1 1 0 DEAD_2 Saccharop_dh_N PF04455.12 gi|134045417|ref|YP_001096903.1| - 1.4e-36 124.9 0.0 3.6e-36 123.6 0.0 1.7 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region DUF2100 PF09873.9 gi|134045418|ref|YP_001096904.1| - 1.3e-92 309.5 14.2 1.5e-92 309.4 14.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2100) Aminotran_1_2 PF00155.21 gi|134045419|ref|YP_001096905.1| - 2.2e-58 198.2 0.0 2.7e-58 197.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|134045419|ref|YP_001096905.1| - 1.4e-12 47.3 0.0 1.1e-10 41.0 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|134045419|ref|YP_001096905.1| - 5e-07 28.6 0.1 7.2e-07 28.1 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|134045419|ref|YP_001096905.1| - 2.3e-06 26.7 0.1 6.9e-06 25.2 0.1 1.6 1 1 0 2 2 2 1 Allinase DegT_DnrJ_EryC1 PF01041.17 gi|134045419|ref|YP_001096905.1| - 1.5e-05 24.5 0.6 3.9e-05 23.1 0.5 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family DNA_pol_E_B PF04042.16 gi|134045419|ref|YP_001096905.1| - 0.1 11.9 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase alpha/epsilon subunit B ANF_receptor PF01094.28 gi|134045419|ref|YP_001096905.1| - 0.13 11.3 0.0 0.24 10.4 0.0 1.4 1 1 0 1 1 1 0 Receptor family ligand binding region GATase_3 PF07685.14 gi|134045420|ref|YP_001096906.1| - 2.1e-44 151.5 0.3 4.8e-44 150.3 0.1 1.7 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|134045420|ref|YP_001096906.1| - 5.2e-21 75.0 0.1 1.4e-20 73.6 0.0 1.7 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|134045420|ref|YP_001096906.1| - 1.9e-20 73.5 0.1 1e-19 71.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 gi|134045420|ref|YP_001096906.1| - 4.1e-05 23.5 0.2 0.001 19.0 0.0 3.0 3 1 1 4 4 4 1 Molybdopterin guanine dinucleotide synthesis protein B SNO PF01174.19 gi|134045420|ref|YP_001096906.1| - 0.00024 21.0 0.1 0.00054 19.8 0.1 1.6 1 0 0 1 1 1 1 SNO glutamine amidotransferase family BPL_N PF09825.9 gi|134045420|ref|YP_001096906.1| - 0.024 13.7 0.0 0.041 13.0 0.0 1.2 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal DUF1611 PF07755.11 gi|134045420|ref|YP_001096906.1| - 0.025 13.9 0.0 1.7 7.9 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain GATase_5 PF13507.6 gi|134045420|ref|YP_001096906.1| - 0.034 13.2 0.0 0.063 12.4 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CTP_synth_N PF06418.14 gi|134045420|ref|YP_001096906.1| - 0.054 12.8 0.3 0.19 11.0 0.2 1.9 2 0 0 2 2 2 0 CTP synthase N-terminus DJ-1_PfpI PF01965.24 gi|134045420|ref|YP_001096906.1| - 0.073 12.9 0.0 0.29 10.9 0.0 1.9 2 0 0 2 2 2 0 DJ-1/PfpI family HisKA PF00512.25 gi|134045420|ref|YP_001096906.1| - 0.2 11.7 0.0 6.1 7.0 0.0 2.9 3 1 0 3 3 3 0 His Kinase A (phospho-acceptor) domain SpoOE-like PF09388.10 gi|134045421|ref|YP_001096907.1| - 0.047 13.6 3.3 3.3 7.7 0.0 3.3 3 0 0 3 3 3 0 Spo0E like sporulation regulatory protein PI-TkoII_IV PF18714.1 gi|134045421|ref|YP_001096907.1| - 0.2 11.1 0.1 0.2 11.1 0.1 2.4 2 1 0 2 2 2 0 DNA polymerase II intein Domain IV OB_aCoA_assoc PF01796.17 gi|134045422|ref|YP_001096908.1| - 2.1e-21 75.6 0.1 3.1e-21 75.1 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|134045422|ref|YP_001096908.1| - 7.2e-12 44.9 0.8 1e-11 44.5 0.8 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|134045422|ref|YP_001096908.1| - 0.0088 15.9 2.2 0.41 10.6 0.0 2.5 2 0 0 2 2 2 1 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|134045422|ref|YP_001096908.1| - 0.023 14.8 0.7 0.041 14.0 0.7 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-FPG_IleRS PF06827.14 gi|134045422|ref|YP_001096908.1| - 0.055 13.3 1.8 4.1 7.3 0.3 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS FdhE PF04216.12 gi|134045422|ref|YP_001096908.1| - 0.22 11.4 0.2 0.18 11.7 0.2 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-C2H2_3 PF13878.6 gi|134045422|ref|YP_001096908.1| - 0.23 11.3 0.3 0.23 11.3 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO UPF0547 PF10571.9 gi|134045422|ref|YP_001096908.1| - 2.2 8.4 6.7 6 7.1 1.4 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Thiolase_N PF00108.23 gi|134045423|ref|YP_001096909.1| - 2.8e-28 99.0 1.3 3.1e-28 98.9 0.2 1.6 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|134045423|ref|YP_001096909.1| - 2.1e-12 46.8 0.1 5.6e-12 45.4 0.1 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|134045423|ref|YP_001096909.1| - 3.1e-06 26.9 5.5 4e-06 26.6 3.2 2.2 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|134045423|ref|YP_001096909.1| - 0.00032 20.5 0.9 0.012 15.5 0.5 2.5 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 gi|134045424|ref|YP_001096910.1| - 1.2e-10 41.4 0.0 5.2e-10 39.4 0.0 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|134045424|ref|YP_001096910.1| - 1.1e-05 25.3 0.6 0.0039 16.9 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|134045424|ref|YP_001096910.1| - 6e-05 22.5 0.3 9.1e-05 21.9 0.3 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.17 gi|134045424|ref|YP_001096910.1| - 0.0018 18.2 0.1 0.0027 17.6 0.1 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.10 gi|134045424|ref|YP_001096910.1| - 0.018 14.9 4.1 0.025 14.4 1.4 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HTH_3 PF01381.22 gi|134045425|ref|YP_001096911.1| - 1.4e-08 34.7 0.0 1.9e-07 31.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|134045425|ref|YP_001096911.1| - 6.8e-06 26.0 0.1 3.9e-05 23.6 0.0 2.3 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|134045425|ref|YP_001096911.1| - 0.054 13.8 0.0 0.095 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DRTGG PF07085.12 gi|134045425|ref|YP_001096911.1| - 0.12 12.2 0.1 1.1 9.0 0.1 2.2 1 1 0 1 1 1 0 DRTGG domain NurA PF09376.10 gi|134045426|ref|YP_001096912.1| - 2.2e-40 138.9 7.2 3e-40 138.5 7.2 1.1 1 0 0 1 1 1 1 NurA domain Get5_bdg PF16843.5 gi|134045426|ref|YP_001096912.1| - 0.26 10.8 2.7 0.75 9.3 0.7 2.8 2 1 0 2 2 2 0 Binding domain to Get4 on Get5, Golgi to ER traffic protein GTP_EFTU PF00009.27 gi|134045427|ref|YP_001096913.1| - 1.3e-31 109.6 0.4 4.2e-31 108.0 0.4 1.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|134045427|ref|YP_001096913.1| - 2.2e-31 107.9 0.3 6.1e-31 106.5 0.3 1.8 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|134045427|ref|YP_001096913.1| - 5.6e-08 33.1 1.3 1.9e-07 31.4 1.3 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|134045427|ref|YP_001096913.1| - 4.3e-05 23.5 0.7 0.00036 20.5 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|134045427|ref|YP_001096913.1| - 0.0004 20.5 0.0 0.0012 18.9 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|134045427|ref|YP_001096913.1| - 0.0021 18.0 0.1 0.005 16.8 0.1 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|134045427|ref|YP_001096913.1| - 0.049 13.4 0.3 3 7.6 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MeaB PF03308.16 gi|134045427|ref|YP_001096913.1| - 0.059 12.3 0.1 0.53 9.2 0.0 2.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Arf PF00025.21 gi|134045427|ref|YP_001096913.1| - 0.11 11.9 0.0 0.36 10.3 0.0 1.8 2 0 0 2 2 2 0 ADP-ribosylation factor family Nop10p PF04135.12 gi|134045427|ref|YP_001096913.1| - 0.36 10.9 4.1 0.71 10.0 4.1 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family Ribosomal_S6e PF01092.19 gi|134045428|ref|YP_001096914.1| - 2.1e-38 131.1 0.7 2.5e-38 130.9 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e Gln-synt_C PF00120.24 gi|134045429|ref|YP_001096915.1| - 1.4e-135 451.8 0.0 1.7e-135 451.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|134045429|ref|YP_001096915.1| - 4.2e-31 106.5 0.1 1.2e-30 105.1 0.0 1.8 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain EPSP_synthase PF00275.20 gi|134045430|ref|YP_001096916.1| - 1.6e-133 445.5 0.1 1.8e-133 445.3 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Leucyl-specific PF14795.6 gi|134045430|ref|YP_001096916.1| - 0.016 15.3 0.5 0.6 10.2 0.2 2.9 2 1 0 2 2 2 0 Leucine-tRNA synthetase-specific domain Peptidase_M24 PF00557.24 gi|134045431|ref|YP_001096917.1| - 1.8e-50 171.6 0.1 2.2e-50 171.2 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 ATP-cone PF03477.16 gi|134045431|ref|YP_001096917.1| - 0.0058 17.2 2.3 0.19 12.3 0.2 2.7 2 1 0 2 2 2 1 ATP cone domain PRD PF00874.20 gi|134045431|ref|YP_001096917.1| - 0.049 13.9 0.2 0.049 13.9 0.2 3.0 3 0 0 3 3 3 0 PRD domain CGI-121 PF08617.10 gi|134045431|ref|YP_001096917.1| - 0.11 12.6 3.3 0.27 11.3 3.3 1.7 1 1 0 1 1 1 0 Kinase binding protein CGI-121 CbiD PF01888.17 gi|134045432|ref|YP_001096918.1| - 7.8e-92 307.1 2.7 1.1e-91 306.7 2.7 1.2 1 0 0 1 1 1 1 CbiD DUF1727 PF08353.10 gi|134045432|ref|YP_001096918.1| - 0.026 14.4 0.0 0.068 13.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1727) TrmO PF01980.16 gi|134045433|ref|YP_001096919.1| - 3.3e-25 88.6 0.0 3.9e-25 88.4 0.0 1.0 1 0 0 1 1 1 1 tRNA-methyltransferase O SNase PF00565.17 gi|134045434|ref|YP_001096920.1| - 1.4e-27 96.3 0.0 1.8e-27 95.9 0.0 1.1 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Pirin PF02678.16 gi|134045434|ref|YP_001096920.1| - 0.19 11.7 0.2 0.46 10.5 0.1 1.7 2 1 0 2 2 2 0 Pirin Orn_Arg_deC_N PF02784.16 gi|134045435|ref|YP_001096921.1| - 7.1e-58 195.9 1.1 1.1e-57 195.3 0.2 1.6 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|134045435|ref|YP_001096921.1| - 5.4e-23 81.1 0.0 1.5e-22 79.6 0.0 1.9 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|134045435|ref|YP_001096921.1| - 0.11 12.1 0.0 0.49 10.0 0.0 1.9 2 0 0 2 2 2 0 Alanine racemase, N-terminal domain PhoU PF01895.19 gi|134045436|ref|YP_001096922.1| - 1.8e-16 60.3 14.4 1.3e-13 51.2 4.6 3.1 3 1 0 3 3 2 2 PhoU domain HTH_24 PF13412.6 gi|134045436|ref|YP_001096922.1| - 4.3e-05 23.0 0.1 8.9e-05 22.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|134045436|ref|YP_001096922.1| - 0.00098 19.0 0.0 0.002 17.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|134045436|ref|YP_001096922.1| - 0.0017 18.3 0.0 0.0033 17.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|134045436|ref|YP_001096922.1| - 0.0019 18.1 0.0 0.0054 16.6 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|134045436|ref|YP_001096922.1| - 0.005 16.8 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|134045436|ref|YP_001096922.1| - 0.0055 17.0 0.0 0.018 15.3 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator Sigma70_r4 PF04545.16 gi|134045436|ref|YP_001096922.1| - 0.017 14.6 0.0 0.049 13.2 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 MarR PF01047.22 gi|134045436|ref|YP_001096922.1| - 0.018 14.9 0.0 0.048 13.6 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|134045436|ref|YP_001096922.1| - 0.026 14.3 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|134045436|ref|YP_001096922.1| - 0.09 12.8 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_3 PF01381.22 gi|134045436|ref|YP_001096922.1| - 0.12 12.4 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix Latarcin PF10279.9 gi|134045436|ref|YP_001096922.1| - 0.21 12.0 1.5 1.4 9.3 0.0 2.5 2 0 0 2 2 2 0 Latarcin precursor DUF677 PF05055.12 gi|134045436|ref|YP_001096922.1| - 0.41 9.5 6.6 0.048 12.6 0.8 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF677) ABC_tran PF00005.27 gi|134045437|ref|YP_001096923.1| - 5.6e-33 114.3 0.0 8.4e-33 113.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA PF00004.29 gi|134045437|ref|YP_001096923.1| - 2.3e-06 28.0 0.1 2.7e-05 24.6 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 gi|134045437|ref|YP_001096923.1| - 3.9e-06 26.9 0.0 0.034 14.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|134045437|ref|YP_001096923.1| - 6.8e-05 22.7 0.0 0.015 15.0 0.0 2.3 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|134045437|ref|YP_001096923.1| - 6.9e-05 22.4 0.1 0.096 12.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|134045437|ref|YP_001096923.1| - 0.00049 20.1 0.0 0.0047 16.9 0.0 2.0 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|134045437|ref|YP_001096923.1| - 0.0015 19.0 0.0 0.0025 18.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|134045437|ref|YP_001096923.1| - 0.0016 18.7 0.1 0.0058 16.9 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|134045437|ref|YP_001096923.1| - 0.0019 18.8 0.0 0.0035 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|134045437|ref|YP_001096923.1| - 0.0023 17.6 0.0 0.0042 16.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|134045437|ref|YP_001096923.1| - 0.0023 17.9 0.1 0.082 12.8 0.0 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|134045437|ref|YP_001096923.1| - 0.0025 18.3 0.0 0.9 10.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|134045437|ref|YP_001096923.1| - 0.0035 17.3 0.0 0.0067 16.3 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|134045437|ref|YP_001096923.1| - 0.016 14.9 0.0 0.35 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|134045437|ref|YP_001096923.1| - 0.019 14.9 0.7 4.7 7.1 0.1 2.5 2 0 0 2 2 2 0 NTPase NB-ARC PF00931.22 gi|134045437|ref|YP_001096923.1| - 0.023 13.9 0.0 0.045 12.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 gi|134045437|ref|YP_001096923.1| - 0.058 13.4 0.0 0.28 11.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|134045437|ref|YP_001096923.1| - 0.071 12.6 0.0 0.16 11.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|134045437|ref|YP_001096923.1| - 0.09 13.0 0.0 0.41 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|134045437|ref|YP_001096923.1| - 0.094 12.9 0.0 0.18 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|134045437|ref|YP_001096923.1| - 0.1 13.0 0.1 0.38 11.2 0.0 2.0 2 0 0 2 2 2 0 RNA helicase MMR_HSR1 PF01926.23 gi|134045437|ref|YP_001096923.1| - 0.1 12.7 0.1 0.52 10.4 0.1 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 gi|134045437|ref|YP_001096923.1| - 0.11 12.7 0.0 0.24 11.6 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|134045437|ref|YP_001096923.1| - 0.15 12.0 0.2 0.95 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) BPD_transp_1 PF00528.22 gi|134045438|ref|YP_001096924.1| - 1.2e-18 67.5 12.1 1.2e-18 67.5 12.1 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Collagen PF01391.18 gi|134045440|ref|YP_001096926.1| - 1.3e-09 37.7 36.8 2.5e-08 33.6 19.9 3.6 3 0 0 3 3 3 2 Collagen triple helix repeat (20 copies) CaiF_GrlA PF07180.11 gi|134045440|ref|YP_001096926.1| - 7.2e-07 29.3 0.0 0.1 12.6 0.0 3.2 3 0 0 3 3 3 2 CaiF/GrlA transcriptional regulator PA-IIL PF07472.11 gi|134045440|ref|YP_001096926.1| - 0.00034 20.9 0.0 15 5.9 0.0 3.9 3 0 0 3 3 3 3 Fucose-binding lectin II (PA-IIL) Pheromone PF08015.11 gi|134045440|ref|YP_001096926.1| - 0.099 13.7 2.9 4.6 8.4 0.0 3.2 2 1 1 3 3 3 0 Fungal mating-type pheromone Big_7 PF17957.1 gi|134045441|ref|YP_001096927.1| - 2.3e-10 41.1 7.1 0.0044 17.7 0.0 5.8 6 0 0 6 6 6 3 Bacterial Ig domain Radical_SAM PF04055.21 gi|134045442|ref|YP_001096928.1| - 4.1e-13 50.1 2.9 4.9e-13 49.8 0.3 2.4 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|134045442|ref|YP_001096928.1| - 8e-07 29.4 2.5 3.4e-06 27.4 0.4 2.8 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|134045442|ref|YP_001096928.1| - 2.7e-06 27.5 1.2 7.9e-06 26.0 0.2 2.4 2 1 0 2 2 2 1 4Fe-4S single cluster domain DUF1677 PF07911.13 gi|134045442|ref|YP_001096928.1| - 0.063 13.7 0.6 3.4 8.1 0.0 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1677) GHMP_kinases_C PF08544.13 gi|134045442|ref|YP_001096928.1| - 0.13 12.7 0.3 7.6 7.0 0.0 2.9 2 0 0 2 2 2 0 GHMP kinases C terminal MCH PF02289.16 gi|134045443|ref|YP_001096929.1| - 1.5e-128 428.5 0.1 1.7e-128 428.3 0.1 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) FKBP_C PF00254.28 gi|134045444|ref|YP_001096930.1| - 1.6e-24 86.0 0.0 2.8e-24 85.2 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Rib_5-P_isom_A PF06026.14 gi|134045445|ref|YP_001096931.1| - 2.5e-58 196.5 0.1 3.5e-58 196.0 0.1 1.2 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|134045445|ref|YP_001096931.1| - 8e-06 25.9 0.0 4.2e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 DeoR C terminal sensor domain UPF0147 PF03685.13 gi|134045446|ref|YP_001096932.1| - 1.5e-35 121.1 1.9 1.7e-35 120.9 1.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) PPDK_N PF01326.19 gi|134045446|ref|YP_001096932.1| - 0.031 13.6 0.3 0.038 13.3 0.3 1.1 1 0 0 1 1 1 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain UPF0253 PF06786.12 gi|134045446|ref|YP_001096932.1| - 0.1 12.9 0.2 7.4 6.9 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Aldolase_II PF00596.21 gi|134045447|ref|YP_001096933.1| - 1.1e-43 149.3 0.0 1.3e-43 149.1 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain SOR_SNZ PF01680.17 gi|134045447|ref|YP_001096933.1| - 0.062 13.1 0.0 0.085 12.6 0.0 1.2 1 0 0 1 1 1 0 SOR/SNZ family Lon_C PF05362.13 gi|134045448|ref|YP_001096934.1| - 2.2e-19 69.9 0.1 5.3e-19 68.6 0.1 1.6 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|134045448|ref|YP_001096934.1| - 3.4e-19 69.0 0.0 3.7e-16 59.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|134045448|ref|YP_001096934.1| - 2.5e-12 46.6 0.2 7.9e-05 22.1 0.0 2.9 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|134045448|ref|YP_001096934.1| - 1.5e-10 41.0 0.0 7.6e-07 29.0 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.6 gi|134045448|ref|YP_001096934.1| - 8.6e-08 32.1 0.0 2.4e-07 30.6 0.0 1.8 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.23 gi|134045448|ref|YP_001096934.1| - 1e-07 31.3 1.9 0.0046 16.1 0.7 3.1 2 1 0 2 2 2 2 MCM P-loop domain AAA_5 PF07728.14 gi|134045448|ref|YP_001096934.1| - 1.4e-06 28.3 0.0 0.054 13.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|134045448|ref|YP_001096934.1| - 2.2e-06 27.5 0.2 0.035 13.9 0.0 3.0 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|134045448|ref|YP_001096934.1| - 0.0024 17.4 0.0 0.0071 15.9 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_3 PF07726.11 gi|134045448|ref|YP_001096934.1| - 0.0037 17.1 0.0 1.9 8.4 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|134045448|ref|YP_001096934.1| - 0.0044 17.5 0.1 0.2 12.1 0.0 2.9 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|134045448|ref|YP_001096934.1| - 0.0073 16.6 0.2 0.036 14.3 0.0 2.2 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|134045448|ref|YP_001096934.1| - 0.0089 16.4 0.0 0.018 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|134045448|ref|YP_001096934.1| - 0.013 15.4 0.0 0.03 14.2 0.0 1.6 1 0 0 1 1 1 0 NACHT domain DUF2913 PF11140.8 gi|134045448|ref|YP_001096934.1| - 0.039 13.7 0.3 0.078 12.7 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2913) AAA_30 PF13604.6 gi|134045448|ref|YP_001096934.1| - 0.069 12.9 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|134045448|ref|YP_001096934.1| - 0.1 13.0 0.1 0.94 9.8 0.0 2.5 3 0 0 3 3 3 0 AAA domain IstB_IS21 PF01695.17 gi|134045448|ref|YP_001096934.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein MARVEL PF01284.23 gi|134045448|ref|YP_001096934.1| - 0.26 11.3 4.2 0.47 10.5 4.2 1.3 1 0 0 1 1 1 0 Membrane-associating domain PRANC PF09372.10 gi|134045448|ref|YP_001096934.1| - 2.1 8.7 0.0 2.1 8.7 0.0 3.5 4 1 0 4 4 3 0 PRANC domain HycI PF01750.18 gi|134045449|ref|YP_001096935.1| - 9.8e-21 73.9 1.4 1.5e-20 73.4 1.4 1.3 1 1 0 1 1 1 1 Hydrogenase maturation protease Acetyltransf_1 PF00583.25 gi|134045450|ref|YP_001096936.1| - 2e-13 50.6 0.0 2.8e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|134045450|ref|YP_001096936.1| - 3.5e-10 40.2 0.4 9e-10 38.9 0.4 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|134045450|ref|YP_001096936.1| - 1e-09 38.4 0.0 2.6e-09 37.1 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|134045450|ref|YP_001096936.1| - 4.1e-09 36.3 0.1 6.6e-09 35.6 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|134045450|ref|YP_001096936.1| - 1.5e-05 25.2 3.2 0.00014 22.0 3.2 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|134045450|ref|YP_001096936.1| - 0.00016 21.2 1.8 0.00024 20.6 1.4 1.3 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_9 PF13527.7 gi|134045450|ref|YP_001096936.1| - 0.0011 19.0 0.0 0.084 13.0 0.0 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain CRISPR_Cas9_WED PF18061.1 gi|134045450|ref|YP_001096936.1| - 0.0012 18.9 1.2 0.0022 18.1 0.3 1.7 1 1 1 2 2 2 1 CRISPR-Cas9 WED domain ComR_TPR PF18710.1 gi|134045450|ref|YP_001096936.1| - 0.01 15.4 0.3 0.012 15.2 0.3 1.2 1 0 0 1 1 1 0 ComR tetratricopeptide Acetyltransf_3 PF13302.7 gi|134045450|ref|YP_001096936.1| - 0.012 16.2 0.0 0.023 15.4 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_18 PF18014.1 gi|134045450|ref|YP_001096936.1| - 0.03 14.2 0.0 6.6 6.6 0.0 2.3 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|134045450|ref|YP_001096936.1| - 0.041 13.6 0.0 0.064 12.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Pox_polyA_pol_N PF12630.7 gi|134045450|ref|YP_001096936.1| - 0.15 12.4 3.7 0.38 11.1 0.1 2.4 1 1 0 2 2 2 0 Poxvirus poly(A) polymerase N-terminal domain ABC_tran PF00005.27 gi|134045451|ref|YP_001096937.1| - 1.1e-32 113.4 0.1 1.6e-32 112.9 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|134045451|ref|YP_001096937.1| - 8.5e-08 32.3 1.0 0.0024 17.8 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|134045451|ref|YP_001096937.1| - 8.7e-05 22.2 0.0 0.00019 21.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|134045451|ref|YP_001096937.1| - 0.00086 18.8 3.8 0.018 14.5 3.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|134045451|ref|YP_001096937.1| - 0.0013 19.3 2.4 0.0015 19.0 0.4 1.9 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|134045451|ref|YP_001096937.1| - 0.0019 18.0 5.8 0.0021 17.9 1.2 2.2 2 1 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|134045451|ref|YP_001096937.1| - 0.0036 17.2 0.8 0.0053 16.7 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_14 PF13173.6 gi|134045451|ref|YP_001096937.1| - 0.0042 17.1 0.8 0.17 11.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|134045451|ref|YP_001096937.1| - 0.0057 16.1 0.0 0.0096 15.3 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|134045451|ref|YP_001096937.1| - 0.0063 16.8 2.2 0.15 12.4 2.2 2.1 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|134045451|ref|YP_001096937.1| - 0.0066 15.5 0.0 0.01 14.8 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SbcCD_C PF13558.6 gi|134045451|ref|YP_001096937.1| - 0.015 15.5 0.0 0.51 10.6 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATP_bind_1 PF03029.17 gi|134045451|ref|YP_001096937.1| - 0.016 15.0 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|134045451|ref|YP_001096937.1| - 0.025 15.0 0.0 0.036 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain APS_kinase PF01583.20 gi|134045451|ref|YP_001096937.1| - 0.042 13.7 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_27 PF13514.6 gi|134045451|ref|YP_001096937.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|134045451|ref|YP_001096937.1| - 0.15 12.0 3.7 0.24 11.3 1.1 2.1 1 1 1 2 2 2 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|134045451|ref|YP_001096937.1| - 0.19 11.4 0.0 0.27 10.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|134045451|ref|YP_001096937.1| - 0.23 10.6 4.4 1.1 8.4 4.4 2.1 1 1 0 1 1 1 0 NB-ARC domain FecCD PF01032.18 gi|134045452|ref|YP_001096938.1| - 1.3e-96 323.3 31.4 1.5e-96 323.1 31.4 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|134045452|ref|YP_001096938.1| - 4.2e-05 23.2 16.8 4.2e-05 23.2 16.8 1.7 2 0 0 2 2 2 1 ABC 3 transport family TNFR_16_TM PF18422.1 gi|134045452|ref|YP_001096938.1| - 1.5 8.9 8.5 5.2 7.1 0.1 3.4 3 0 0 3 3 3 0 Tumor necrosis factor receptor member 16 trans-membrane domain Peripla_BP_2 PF01497.18 gi|134045453|ref|YP_001096939.1| - 8.2e-33 113.9 0.1 1.3e-32 113.3 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|134045454|ref|YP_001096940.1| - 1.4e-22 80.4 0.0 2e-22 79.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|134045455|ref|YP_001096941.1| - 5.7e-23 81.7 0.0 8.1e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Dimerisation2 PF16864.5 gi|134045456|ref|YP_001096942.1| - 1.2e-07 31.6 0.1 2.3e-07 30.7 0.1 1.5 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_2 PF00891.18 gi|134045456|ref|YP_001096942.1| - 1.3e-07 31.1 0.0 2.1e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_31 PF13847.6 gi|134045456|ref|YP_001096942.1| - 0.00016 21.5 0.0 0.0006 19.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Dimerisation PF08100.11 gi|134045456|ref|YP_001096942.1| - 0.0058 16.6 0.1 0.45 10.6 0.1 2.7 2 0 0 2 2 2 1 Dimerisation domain Methyltransf_12 PF08242.12 gi|134045456|ref|YP_001096942.1| - 0.025 15.3 0.0 0.064 14.0 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|134045456|ref|YP_001096942.1| - 0.11 13.2 0.0 0.2 12.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain AhpC-TSA PF00578.21 gi|134045457|ref|YP_001096943.1| - 1.6e-28 99.1 0.0 2.2e-28 98.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|134045457|ref|YP_001096943.1| - 1.6e-12 47.4 0.0 2.3e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|134045457|ref|YP_001096943.1| - 1.8e-07 30.9 0.1 3.3e-07 30.0 0.1 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Zip PF02535.22 gi|134045458|ref|YP_001096944.1| - 1.4e-19 70.5 21.7 1.2e-10 41.1 11.9 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter Cation_efflux PF01545.21 gi|134045458|ref|YP_001096944.1| - 0.025 14.3 2.4 0.025 14.3 2.4 3.6 3 2 0 3 3 3 0 Cation efflux family Ferritin PF00210.24 gi|134045459|ref|YP_001096945.1| - 1.4e-21 76.9 0.0 1.7e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.6 gi|134045459|ref|YP_001096945.1| - 0.0097 16.1 0.0 0.012 15.8 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like domain CDP-OH_P_transf PF01066.21 gi|134045460|ref|YP_001096946.1| - 4.4e-14 53.0 2.4 4.4e-14 53.0 2.4 3.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase UPF0139 PF03669.13 gi|134045460|ref|YP_001096946.1| - 4.2 7.3 6.7 0.77 9.7 0.1 2.6 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0139) Glycos_transf_2 PF00535.26 gi|134045461|ref|YP_001096947.1| - 1.2e-24 87.0 0.1 1.6e-24 86.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|134045461|ref|YP_001096947.1| - 0.0005 20.0 0.0 0.00059 19.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|134045461|ref|YP_001096947.1| - 0.0028 18.1 0.0 0.0045 17.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 UPF0051 PF01458.17 gi|134045462|ref|YP_001096948.1| - 9.6e-61 205.2 0.4 1.2e-60 204.9 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|134045463|ref|YP_001096949.1| - 7.6e-22 78.3 0.0 1.1e-21 77.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|134045463|ref|YP_001096949.1| - 6.6e-08 32.7 0.2 0.0027 17.6 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|134045463|ref|YP_001096949.1| - 6e-07 29.5 0.1 5.9e-06 26.3 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase SMC_N PF02463.19 gi|134045463|ref|YP_001096949.1| - 6.2e-05 22.5 0.1 0.037 13.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|134045463|ref|YP_001096949.1| - 0.00062 19.5 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|134045463|ref|YP_001096949.1| - 0.00089 19.8 0.5 0.0018 18.8 0.2 1.6 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|134045463|ref|YP_001096949.1| - 0.0012 19.0 0.0 0.0019 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|134045463|ref|YP_001096949.1| - 0.0029 17.4 0.0 0.0043 16.8 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|134045463|ref|YP_001096949.1| - 0.0029 17.7 0.1 0.011 15.8 0.1 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|134045463|ref|YP_001096949.1| - 0.0046 16.6 0.0 0.0077 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|134045463|ref|YP_001096949.1| - 0.018 15.0 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea cobW PF02492.19 gi|134045463|ref|YP_001096949.1| - 0.019 14.5 0.0 0.044 13.4 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|134045463|ref|YP_001096949.1| - 0.023 14.7 0.0 0.075 13.1 0.0 1.7 2 0 0 2 2 2 0 Dynamin family AAA_25 PF13481.6 gi|134045463|ref|YP_001096949.1| - 0.024 14.2 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|134045463|ref|YP_001096949.1| - 0.034 14.6 0.2 0.26 11.7 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|134045463|ref|YP_001096949.1| - 0.045 14.1 0.0 0.056 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|134045463|ref|YP_001096949.1| - 0.06 13.6 0.0 0.26 11.5 0.0 1.8 1 1 0 2 2 2 0 AAA domain AIG1 PF04548.16 gi|134045463|ref|YP_001096949.1| - 0.087 12.1 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 AIG1 family IstB_IS21 PF01695.17 gi|134045463|ref|YP_001096949.1| - 0.16 11.7 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Flavoprotein PF02441.19 gi|134045464|ref|YP_001096950.1| - 1.9e-19 70.0 0.0 7.2e-19 68.1 0.0 1.8 1 1 0 1 1 1 1 Flavoprotein FMN_red PF03358.15 gi|134045465|ref|YP_001096951.1| - 7.4e-34 116.7 0.0 9e-34 116.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|134045465|ref|YP_001096951.1| - 5.6e-09 36.0 0.0 7.4e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|134045465|ref|YP_001096951.1| - 0.045 14.0 0.0 0.071 13.3 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain E1-E2_ATPase PF00122.20 gi|134045466|ref|YP_001096952.1| - 4.5e-54 182.7 3.0 5.1e-54 182.5 1.4 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|134045466|ref|YP_001096952.1| - 5.1e-40 138.0 0.5 8.2e-40 137.3 0.5 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|134045466|ref|YP_001096952.1| - 2e-14 53.8 5.8 4.3e-14 52.7 2.3 2.8 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|134045466|ref|YP_001096952.1| - 0.014 15.1 0.2 0.014 15.1 0.2 3.5 3 1 1 4 4 4 0 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|134045467|ref|YP_001096953.1| - 3.5e-13 49.8 0.2 4.3e-13 49.5 0.2 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain RRM_3 PF08777.11 gi|134045467|ref|YP_001096953.1| - 0.0043 17.1 0.0 0.0049 16.9 0.0 1.1 1 0 0 1 1 1 1 RNA binding motif YokU PF14122.6 gi|134045467|ref|YP_001096953.1| - 0.084 12.9 0.6 0.1 12.6 0.6 1.1 1 0 0 1 1 1 0 YokU-like protein, putative antitoxin CutA1 PF03091.15 gi|134045468|ref|YP_001096954.1| - 3.1e-22 78.3 0.1 3.4e-22 78.1 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Lactamase_B PF00753.27 gi|134045469|ref|YP_001096955.1| - 2.9e-12 47.0 0.0 5.2e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.25 gi|134045469|ref|YP_001096955.1| - 1.3e-09 38.4 0.0 2.1e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.7 gi|134045469|ref|YP_001096955.1| - 8.6e-06 25.4 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_5 PF12724.7 gi|134045469|ref|YP_001096955.1| - 0.017 15.4 0.0 0.032 14.5 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain SF3a60_bindingd PF12108.8 gi|134045469|ref|YP_001096955.1| - 0.057 13.3 0.3 0.36 10.8 0.1 2.2 2 0 0 2 2 2 0 Splicing factor SF3a60 binding domain DrsE PF02635.15 gi|134045470|ref|YP_001096956.1| - 4.3e-07 30.3 0.0 4.8e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DALR_2 PF09190.11 gi|134045470|ref|YP_001096956.1| - 0.009 16.5 0.0 0.019 15.4 0.0 1.6 2 0 0 2 2 2 1 DALR domain U62_UL91 PF17442.2 gi|134045470|ref|YP_001096956.1| - 0.11 12.5 0.3 4.8 7.2 0.1 2.2 2 0 0 2 2 2 0 Functional domain of U62 and UL91 proteins HypA PF01155.19 gi|134045471|ref|YP_001096957.1| - 0.029 14.4 2.1 0.029 14.4 2.1 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|134045471|ref|YP_001096957.1| - 0.033 14.3 4.0 0.033 14.3 4.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|134045471|ref|YP_001096957.1| - 0.092 12.2 12.4 3.3 7.2 7.5 2.7 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|134045471|ref|YP_001096957.1| - 0.14 12.2 8.3 0.29 11.2 8.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-tcix PF14952.6 gi|134045471|ref|YP_001096957.1| - 0.33 10.6 10.1 1.6 8.4 5.2 2.3 2 1 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF4379 PF14311.6 gi|134045471|ref|YP_001096957.1| - 0.34 11.3 10.1 0.14 12.5 7.2 1.9 1 1 1 2 2 2 0 Probable Zinc-ribbon domain Fer4_2 PF12797.7 gi|134045471|ref|YP_001096957.1| - 0.36 11.0 8.3 2.7 8.3 4.7 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain DUF2072 PF09845.9 gi|134045471|ref|YP_001096957.1| - 0.66 10.2 7.0 0.26 11.6 5.1 1.3 1 1 0 1 1 1 0 Zn-ribbon containing protein HalOD2 PF18547.1 gi|134045471|ref|YP_001096957.1| - 0.67 9.9 10.7 0.85 9.6 0.7 2.6 2 1 0 2 2 2 0 Halobacterial output domain 2 OrfB_Zn_ribbon PF07282.11 gi|134045471|ref|YP_001096957.1| - 0.68 9.9 8.1 7 6.7 0.2 2.3 1 1 0 2 2 2 0 Putative transposase DNA-binding domain Rubredoxin_2 PF18073.1 gi|134045471|ref|YP_001096957.1| - 0.77 9.5 13.5 4.8 7.0 9.5 3.0 2 1 0 2 2 2 0 Rubredoxin metal binding domain NRDD PF13597.6 gi|134045471|ref|YP_001096957.1| - 0.79 8.4 5.0 0.72 8.6 5.0 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zinc_ribbon_4 PF13717.6 gi|134045471|ref|YP_001096957.1| - 0.95 9.4 8.0 2.7 8.0 0.2 2.7 3 0 0 3 3 3 0 zinc-ribbon domain C1_1 PF00130.22 gi|134045471|ref|YP_001096957.1| - 1.2 9.1 8.7 1.7 8.6 0.5 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.6 gi|134045471|ref|YP_001096957.1| - 1.3 8.8 15.5 3.5 7.5 0.8 3.3 3 0 0 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.9 gi|134045471|ref|YP_001096957.1| - 1.4 9.1 17.4 1.1 9.4 0.6 3.1 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF983 PF06170.12 gi|134045471|ref|YP_001096957.1| - 5 7.6 6.0 3.3 8.2 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) ADK_lid PF05191.14 gi|134045471|ref|YP_001096957.1| - 7.1 6.7 9.0 1.7 8.7 5.3 1.9 2 1 0 2 2 2 0 Adenylate kinase, active site lid Ferritin PF00210.24 gi|134045472|ref|YP_001096958.1| - 1.2e-40 138.7 3.7 1.6e-40 138.3 3.7 1.1 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|134045472|ref|YP_001096958.1| - 6.9e-06 26.5 1.3 8.8e-06 26.2 1.3 1.2 1 0 0 1 1 1 1 Rubrerythrin MTH865 PF07747.11 gi|134045473|ref|YP_001096959.1| - 1e-19 70.1 0.0 1.3e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 MTH865-like family Desulfoferrodox PF01880.18 gi|134045474|ref|YP_001096960.1| - 8.3e-31 106.5 1.0 9.7e-31 106.2 1.0 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin CMD PF02627.20 gi|134045475|ref|YP_001096961.1| - 9.5e-11 41.6 0.0 1.1e-10 41.4 0.0 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family VASP_tetra PF08776.11 gi|134045475|ref|YP_001096961.1| - 0.076 12.6 0.1 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 VASP tetramerisation domain CCG PF02754.16 gi|134045476|ref|YP_001096962.1| - 1.1e-37 128.0 2.4 1.5e-19 70.0 0.4 2.9 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_9 PF13187.6 gi|134045477|ref|YP_001096963.1| - 4.3e-11 42.8 17.3 3.5e-09 36.7 7.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134045477|ref|YP_001096963.1| - 4.3e-10 39.9 6.3 6.6e-10 39.3 5.5 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045477|ref|YP_001096963.1| - 3.7e-09 37.0 8.2 5e-09 36.6 6.5 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045477|ref|YP_001096963.1| - 1.5e-08 34.6 6.4 1.5e-08 34.6 6.4 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045477|ref|YP_001096963.1| - 2.3e-06 28.1 8.7 7.2e-06 26.5 8.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045477|ref|YP_001096963.1| - 6.1e-05 23.9 9.2 0.015 16.2 1.2 2.6 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|134045477|ref|YP_001096963.1| - 0.00019 21.1 13.0 0.023 14.5 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134045477|ref|YP_001096963.1| - 0.0013 18.7 12.3 0.018 15.1 3.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|134045477|ref|YP_001096963.1| - 0.0028 18.0 12.8 0.2 12.2 4.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134045477|ref|YP_001096963.1| - 0.015 15.4 8.5 0.069 13.3 8.5 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134045477|ref|YP_001096963.1| - 0.019 15.1 13.2 0.36 11.0 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|134045477|ref|YP_001096963.1| - 0.39 11.8 16.7 2.2 9.4 3.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|134045477|ref|YP_001096963.1| - 0.64 9.8 9.9 0.22 11.3 1.1 2.3 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|134045477|ref|YP_001096963.1| - 0.84 9.9 8.0 3.3 8.0 0.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|134045477|ref|YP_001096963.1| - 4.7 8.1 11.6 16 6.4 0.5 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Complex1_49kDa PF00346.19 gi|134045478|ref|YP_001096964.1| - 1.7e-47 161.8 0.1 9.9e-37 126.5 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|134045478|ref|YP_001096964.1| - 5.1e-12 45.5 6.8 4e-11 42.5 1.3 3.1 2 1 1 3 3 3 3 Nickel-dependent hydrogenase CBS PF00571.28 gi|134045479|ref|YP_001096965.1| - 1.8e-16 60.3 0.1 8.4e-09 35.8 0.0 2.1 2 0 0 2 2 2 2 CBS domain DUF1462 PF07315.11 gi|134045479|ref|YP_001096965.1| - 0.044 14.1 0.4 0.1 12.9 0.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1462) Aconitase PF00330.20 gi|134045480|ref|YP_001096966.1| - 3.1e-93 313.3 6.3 3.6e-91 306.5 6.3 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) LSM PF01423.22 gi|134045481|ref|YP_001096967.1| - 9.7e-18 63.6 0.2 1.1e-17 63.5 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|134045481|ref|YP_001096967.1| - 0.00031 20.8 0.0 0.00032 20.8 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain Hfq PF17209.3 gi|134045481|ref|YP_001096967.1| - 0.02 14.5 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Hfq protein DUF150_C PF17384.2 gi|134045481|ref|YP_001096967.1| - 0.051 13.7 0.1 0.057 13.5 0.1 1.1 1 0 0 1 1 1 0 RimP C-terminal SH3 domain Ribosomal_L37e PF01907.19 gi|134045482|ref|YP_001096968.1| - 1.9e-23 82.4 11.2 2.2e-23 82.1 11.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e FYVE_2 PF02318.16 gi|134045482|ref|YP_001096968.1| - 0.0073 16.5 2.7 0.008 16.4 2.7 1.0 1 0 0 1 1 1 1 FYVE-type zinc finger zf-piccolo PF05715.13 gi|134045482|ref|YP_001096968.1| - 0.015 15.5 3.4 0.068 13.3 3.4 1.9 1 1 0 1 1 1 0 Piccolo Zn-finger Ribosomal_L32p PF01783.23 gi|134045482|ref|YP_001096968.1| - 0.018 15.3 2.4 0.029 14.6 2.4 1.4 1 0 0 1 1 1 0 Ribosomal L32p protein family DZR PF12773.7 gi|134045482|ref|YP_001096968.1| - 0.022 14.8 1.2 0.028 14.5 1.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-RING_10 PF16685.5 gi|134045482|ref|YP_001096968.1| - 0.023 14.8 1.2 0.028 14.5 1.2 1.2 1 0 0 1 1 1 0 zinc RING finger of MSL2 DUF35_N PF12172.8 gi|134045482|ref|YP_001096968.1| - 0.031 14.2 3.8 0.041 13.8 3.8 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RING_5 PF14634.6 gi|134045482|ref|YP_001096968.1| - 0.054 13.5 2.8 0.075 13.0 2.8 1.2 1 0 0 1 1 1 0 zinc-RING finger domain Zn_Tnp_IS1595 PF12760.7 gi|134045482|ref|YP_001096968.1| - 0.27 11.3 5.6 4.5 7.3 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain GATase_7 PF13537.6 gi|134045483|ref|YP_001096969.1| - 3.3e-24 85.2 0.0 5.1e-24 84.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|134045483|ref|YP_001096969.1| - 1.2e-21 77.4 0.0 2e-21 76.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|134045483|ref|YP_001096969.1| - 2.2e-08 33.3 0.0 4.7e-08 32.3 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|134045483|ref|YP_001096969.1| - 1.2e-06 28.2 0.1 2.6e-06 27.0 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_2 PF00310.21 gi|134045483|ref|YP_001096969.1| - 0.0005 18.9 0.1 1.5 7.5 0.1 3.0 2 1 1 3 3 3 3 Glutamine amidotransferases class-II MctB PF11382.8 gi|134045483|ref|YP_001096969.1| - 0.16 11.6 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 Copper transport outer membrane protein, MctB AAA_31 PF13614.6 gi|134045484|ref|YP_001096970.1| - 2.8e-28 99.0 0.6 4.8e-28 98.3 0.6 1.4 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|134045484|ref|YP_001096970.1| - 2.4e-21 76.3 2.9 1.4e-20 73.8 2.9 2.1 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|134045484|ref|YP_001096970.1| - 9.6e-21 74.2 0.2 1.4e-20 73.6 0.2 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|134045484|ref|YP_001096970.1| - 7.8e-17 61.6 0.8 3.5e-08 33.2 0.1 2.0 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|134045484|ref|YP_001096970.1| - 5.4e-14 52.2 0.0 6.3e-13 48.7 0.0 1.9 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|134045484|ref|YP_001096970.1| - 5.9e-11 42.1 2.0 1.4e-09 37.6 0.1 2.9 3 0 0 3 3 3 1 Anion-transporting ATPase MipZ PF09140.11 gi|134045484|ref|YP_001096970.1| - 4.6e-10 39.2 0.1 1.1e-09 37.9 0.1 1.6 2 1 0 2 2 2 1 ATPase MipZ AAA_26 PF13500.6 gi|134045484|ref|YP_001096970.1| - 8.2e-09 35.6 2.5 1e-07 32.0 2.5 2.2 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|134045484|ref|YP_001096970.1| - 0.00077 19.1 3.2 0.0036 17.0 1.1 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|134045484|ref|YP_001096970.1| - 0.0051 16.6 0.0 0.0089 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|134045484|ref|YP_001096970.1| - 0.018 14.6 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|134045484|ref|YP_001096970.1| - 0.021 14.7 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase VirC1 PF07015.11 gi|134045484|ref|YP_001096970.1| - 0.022 14.1 1.5 0.04 13.2 0.4 1.8 2 0 0 2 2 2 0 VirC1 protein CLP1_P PF16575.5 gi|134045484|ref|YP_001096970.1| - 0.022 14.5 0.2 0.05 13.4 0.2 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop FTHFS PF01268.19 gi|134045484|ref|YP_001096970.1| - 0.098 10.8 0.6 0.14 10.4 0.6 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase BacA PF02673.18 gi|134045485|ref|YP_001096971.1| - 1.1e-67 228.5 16.6 1.2e-67 228.3 16.6 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA TPR_2 PF07719.17 gi|134045486|ref|YP_001096972.1| - 3.7e-13 48.5 2.7 3.5e-07 29.8 0.0 2.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|134045486|ref|YP_001096972.1| - 6.4e-13 47.9 1.9 5.2e-07 29.2 0.1 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|134045486|ref|YP_001096972.1| - 2.6e-08 33.4 2.2 0.0054 16.9 0.2 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|134045486|ref|YP_001096972.1| - 1.7e-06 28.1 0.2 2.9e-06 27.4 0.2 1.4 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.6 gi|134045486|ref|YP_001096972.1| - 4.1e-06 27.3 0.0 7.8e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|134045486|ref|YP_001096972.1| - 5e-06 26.1 2.6 0.00092 18.8 0.4 2.6 1 1 1 2 2 2 2 TPR repeat TPR_14 PF13428.6 gi|134045486|ref|YP_001096972.1| - 5.6e-06 26.7 0.0 9.9e-05 22.9 0.0 2.6 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|134045486|ref|YP_001096972.1| - 3.1e-05 24.1 0.2 0.00061 20.0 0.1 2.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|134045486|ref|YP_001096972.1| - 3.2e-05 24.1 0.3 0.036 14.3 0.1 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|134045486|ref|YP_001096972.1| - 0.00027 21.4 0.0 0.00056 20.4 0.0 1.6 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|134045486|ref|YP_001096972.1| - 0.0011 19.4 0.1 0.26 12.0 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|134045486|ref|YP_001096972.1| - 0.0013 18.5 0.1 0.096 12.6 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|134045486|ref|YP_001096972.1| - 0.0025 17.9 0.0 0.32 11.2 0.0 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|134045486|ref|YP_001096972.1| - 0.0032 17.4 0.1 0.81 9.9 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat MIT PF04212.18 gi|134045486|ref|YP_001096972.1| - 0.018 15.1 1.5 0.48 10.5 0.2 2.3 1 1 2 3 3 3 0 MIT (microtubule interacting and transport) domain DUF4796 PF16044.5 gi|134045486|ref|YP_001096972.1| - 0.13 11.8 0.4 0.16 11.6 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4796) Metallophos PF00149.28 gi|134045487|ref|YP_001096973.1| - 2.6e-09 37.9 2.5 9.9e-08 32.7 0.5 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|134045487|ref|YP_001096973.1| - 9.3e-09 35.7 0.0 1.5e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|134045487|ref|YP_001096973.1| - 0.015 14.6 0.1 0.025 13.9 0.1 1.6 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily DEAD_assoc PF08494.11 gi|134045488|ref|YP_001096974.1| - 6.8e-47 159.7 0.0 1.1e-46 159.1 0.0 1.3 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|134045488|ref|YP_001096974.1| - 3e-29 102.0 0.0 8.1e-29 100.6 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|134045488|ref|YP_001096974.1| - 5.4e-18 65.4 0.1 8.2e-16 58.3 0.0 3.2 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|134045488|ref|YP_001096974.1| - 6.7e-10 39.2 0.3 1.6e-08 34.7 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|134045488|ref|YP_001096974.1| - 0.097 11.4 0.0 0.26 10.0 0.0 1.6 1 1 0 1 1 1 0 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|134045488|ref|YP_001096974.1| - 0.098 12.9 0.8 1.1 9.6 0.8 2.5 1 1 0 1 1 1 0 AAA domain Fer4 PF00037.27 gi|134045489|ref|YP_001096975.1| - 4.6e-15 54.7 16.4 1.9e-07 30.6 4.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134045489|ref|YP_001096975.1| - 1.3e-13 51.3 36.2 7.2e-08 32.9 13.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045489|ref|YP_001096975.1| - 7.2e-13 48.5 36.0 1.2e-07 31.8 13.7 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045489|ref|YP_001096975.1| - 5.4e-12 45.6 23.6 1.6e-08 34.5 14.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134045489|ref|YP_001096975.1| - 2e-10 40.3 15.5 5.2e-06 26.3 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134045489|ref|YP_001096975.1| - 2.2e-09 37.3 9.7 3.3e-09 36.7 9.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134045489|ref|YP_001096975.1| - 3.5e-09 36.2 12.7 1.3e-05 25.0 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|134045489|ref|YP_001096975.1| - 1.1e-08 35.9 10.0 4.2e-05 24.4 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|134045489|ref|YP_001096975.1| - 7.6e-07 29.2 17.2 0.0004 20.7 5.9 2.2 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|134045489|ref|YP_001096975.1| - 9.8e-06 25.9 13.0 0.0013 19.2 13.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045489|ref|YP_001096975.1| - 2.3e-05 24.8 14.2 0.026 15.1 1.9 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|134045489|ref|YP_001096975.1| - 4.3e-05 24.0 15.7 0.0015 19.1 15.7 2.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|134045489|ref|YP_001096975.1| - 0.00013 22.6 13.7 0.018 15.7 13.7 2.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|134045489|ref|YP_001096975.1| - 0.00039 21.1 20.6 0.082 13.9 4.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_19 PF06902.11 gi|134045489|ref|YP_001096975.1| - 0.0023 18.0 3.8 0.0032 17.5 3.8 1.3 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_11 PF13247.6 gi|134045489|ref|YP_001096975.1| - 0.0044 17.1 6.4 0.0053 16.8 6.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|134045489|ref|YP_001096975.1| - 0.0058 17.4 11.6 0.0089 16.9 1.4 2.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|134045489|ref|YP_001096975.1| - 0.016 15.4 11.3 0.038 14.2 2.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain TMP-TENI PF02581.17 gi|134045490|ref|YP_001096976.1| - 8e-63 211.0 0.2 1.1e-62 210.6 0.2 1.2 1 0 0 1 1 1 1 Thiamine monophosphate synthase DUF561 PF04481.12 gi|134045490|ref|YP_001096976.1| - 1.2e-06 27.9 5.0 0.001 18.3 1.1 3.0 2 1 1 3 3 3 2 Protein of unknown function (DUF561) NMO PF03060.15 gi|134045490|ref|YP_001096976.1| - 3.2e-05 23.5 1.2 5.5e-05 22.7 1.2 1.4 1 1 0 1 1 1 1 Nitronate monooxygenase NanE PF04131.14 gi|134045490|ref|YP_001096976.1| - 0.00067 18.9 0.2 0.00095 18.4 0.2 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|134045490|ref|YP_001096976.1| - 0.001 18.4 0.1 0.0018 17.6 0.1 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|134045490|ref|YP_001096976.1| - 0.0089 15.5 2.7 0.073 12.5 0.3 2.1 1 1 1 2 2 2 1 Histidine biosynthesis protein Phage_Coat_B PF05356.11 gi|134045490|ref|YP_001096976.1| - 0.027 14.4 0.3 0.12 12.2 0.1 2.1 2 0 0 2 2 2 0 Phage Coat protein B HK PF02110.15 gi|134045491|ref|YP_001096977.1| - 3.3e-80 269.0 0.5 3.7e-80 268.9 0.5 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|134045491|ref|YP_001096977.1| - 5.2e-05 22.8 0.1 6.8e-05 22.5 0.1 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|134045491|ref|YP_001096977.1| - 0.00015 21.2 0.3 0.00046 19.6 0.3 1.8 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase TP_methylase PF00590.20 gi|134045491|ref|YP_001096977.1| - 0.0021 18.0 0.0 0.0039 17.2 0.0 1.4 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF3833 PF12915.7 gi|134045491|ref|YP_001096977.1| - 0.014 14.9 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3833) HTH_AsnC-type PF13404.6 gi|134045492|ref|YP_001096978.1| - 4.6e-14 52.0 0.0 6.7e-14 51.4 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|134045492|ref|YP_001096978.1| - 1.5e-13 50.0 0.0 2.7e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|134045492|ref|YP_001096978.1| - 8.6e-13 48.1 0.0 1.8e-12 47.0 0.0 1.5 2 0 0 2 2 1 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 gi|134045492|ref|YP_001096978.1| - 5.5e-05 23.1 0.0 0.0001 22.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.11 gi|134045492|ref|YP_001096978.1| - 9.5e-05 22.4 0.0 0.00016 21.6 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_11 PF08279.12 gi|134045492|ref|YP_001096978.1| - 0.00011 22.1 0.0 0.0002 21.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 gi|134045492|ref|YP_001096978.1| - 0.00021 21.4 0.0 0.00031 20.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|134045492|ref|YP_001096978.1| - 0.00023 21.0 0.0 0.00034 20.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|134045492|ref|YP_001096978.1| - 0.00028 20.7 0.0 0.00049 19.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|134045492|ref|YP_001096978.1| - 0.00043 20.1 0.0 0.0019 18.1 0.0 1.8 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|134045492|ref|YP_001096978.1| - 0.00059 20.0 0.1 0.0014 18.8 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|134045492|ref|YP_001096978.1| - 0.00098 18.9 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HxlR PF01638.17 gi|134045492|ref|YP_001096978.1| - 0.0023 17.7 0.0 0.0047 16.7 0.0 1.6 1 1 1 2 2 2 1 HxlR-like helix-turn-helix DUF2621 PF11084.8 gi|134045492|ref|YP_001096978.1| - 0.0036 17.3 0.1 0.0067 16.4 0.0 1.5 2 0 0 2 2 1 1 Protein of unknown function (DUF2621) TrmB PF01978.19 gi|134045492|ref|YP_001096978.1| - 0.004 17.0 0.1 0.0056 16.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|134045492|ref|YP_001096978.1| - 0.0042 16.8 0.0 0.0064 16.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Mga PF05043.13 gi|134045492|ref|YP_001096978.1| - 0.0049 17.4 0.0 0.01 16.4 0.0 1.5 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_12 PF08461.10 gi|134045492|ref|YP_001096978.1| - 0.0093 15.9 0.0 0.02 14.8 0.0 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Sigma70_r4_2 PF08281.12 gi|134045492|ref|YP_001096978.1| - 0.0096 15.6 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Phage_antitermQ PF06530.12 gi|134045492|ref|YP_001096978.1| - 0.01 15.7 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 Phage antitermination protein Q HTH_27 PF13463.6 gi|134045492|ref|YP_001096978.1| - 0.012 16.1 0.0 0.03 14.8 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_9 PF08221.11 gi|134045492|ref|YP_001096978.1| - 0.021 14.9 0.0 0.045 13.9 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TFIIE_alpha PF02002.17 gi|134045492|ref|YP_001096978.1| - 0.026 14.4 0.3 0.046 13.6 0.1 1.5 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_34 PF13601.6 gi|134045492|ref|YP_001096978.1| - 0.028 14.6 0.0 0.067 13.4 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|134045492|ref|YP_001096978.1| - 0.038 14.0 0.0 0.061 13.3 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DDRGK PF09756.9 gi|134045492|ref|YP_001096978.1| - 0.046 13.3 0.1 0.071 12.7 0.1 1.3 1 0 0 1 1 1 0 DDRGK domain Sigma70_r4 PF04545.16 gi|134045492|ref|YP_001096978.1| - 0.047 13.2 0.0 0.086 12.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_1 PF00126.27 gi|134045492|ref|YP_001096978.1| - 0.048 13.6 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.20 gi|134045492|ref|YP_001096978.1| - 0.05 14.0 0.0 0.092 13.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_Tnp_ISL3 PF13542.6 gi|134045492|ref|YP_001096978.1| - 0.076 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.12 gi|134045492|ref|YP_001096978.1| - 0.091 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|134045492|ref|YP_001096978.1| - 0.092 12.9 0.0 0.17 12.0 0.0 1.4 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_38 PF13936.6 gi|134045492|ref|YP_001096978.1| - 0.12 12.1 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|134045492|ref|YP_001096978.1| - 0.14 12.2 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_47 PF16221.5 gi|134045492|ref|YP_001096978.1| - 0.16 11.6 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 winged helix-turn-helix Rubrerythrin PF02915.17 gi|134045493|ref|YP_001096979.1| - 5.8e-17 62.4 9.0 5.1e-15 56.1 8.6 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|134045493|ref|YP_001096979.1| - 1.2e-09 38.2 5.2 1e-07 32.0 5.2 2.0 1 1 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.12 gi|134045493|ref|YP_001096979.1| - 0.0025 17.9 1.6 0.072 13.1 0.2 2.2 1 1 0 2 2 2 1 Domain of unknown function (DUF892) FA_desaturase_2 PF03405.14 gi|134045493|ref|YP_001096979.1| - 0.0097 14.8 1.1 0.54 9.0 0.1 2.0 1 1 1 2 2 2 2 Fatty acid desaturase CDC37_C PF08564.10 gi|134045493|ref|YP_001096979.1| - 0.23 11.6 3.6 0.44 10.7 3.6 1.5 1 1 0 1 1 1 0 Cdc37 C terminal domain Flavodoxin_1 PF00258.25 gi|134045494|ref|YP_001096980.1| - 1.9e-12 47.6 0.0 5.5e-12 46.1 0.0 1.7 2 0 0 2 2 2 1 Flavodoxin Lactamase_B PF00753.27 gi|134045494|ref|YP_001096980.1| - 2.7e-11 43.8 0.0 6.8e-11 42.5 0.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily PGM_PMM_I PF02878.16 gi|134045494|ref|YP_001096980.1| - 0.014 15.1 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Ldh_2 PF02615.14 gi|134045495|ref|YP_001096981.1| - 1.1e-111 373.3 0.9 1.2e-111 373.1 0.9 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase tRNA_int_endo PF01974.17 gi|134045496|ref|YP_001096982.1| - 3.1e-30 104.1 0.2 5e-30 103.4 0.2 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|134045496|ref|YP_001096982.1| - 5.7e-16 57.9 0.6 9.6e-16 57.2 0.6 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.10 gi|134045496|ref|YP_001096982.1| - 0.00062 20.0 0.0 0.0012 19.1 0.0 1.5 1 0 0 1 1 1 1 Sen15 protein eRF1_2 PF03464.15 gi|134045497|ref|YP_001096983.1| - 3.2e-44 150.5 0.0 6.7e-44 149.4 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|134045497|ref|YP_001096983.1| - 2.1e-29 102.3 0.6 5.5e-29 100.9 0.6 1.8 1 0 0 1 1 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|134045497|ref|YP_001096983.1| - 6.4e-16 58.9 0.0 8e-15 55.3 0.0 2.1 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 acVLRF1 PF18859.1 gi|134045497|ref|YP_001096983.1| - 3.9e-11 43.3 0.0 6.3e-11 42.7 0.0 1.3 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_1 PF03463.15 gi|134045497|ref|YP_001096983.1| - 7e-10 39.0 0.0 1.4e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 RNA_POL_M_15KD PF02150.16 gi|134045497|ref|YP_001096983.1| - 0.0041 17.0 0.5 1.9 8.4 0.0 2.8 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit HypA PF01155.19 gi|134045497|ref|YP_001096983.1| - 0.021 14.8 0.1 0.042 13.9 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LUC7 PF03194.15 gi|134045497|ref|YP_001096983.1| - 0.073 12.7 0.2 0.073 12.7 0.2 1.5 2 0 0 2 2 2 0 LUC7 N_terminus YhfH PF14149.6 gi|134045497|ref|YP_001096983.1| - 0.093 12.7 0.7 0.27 11.3 0.7 1.8 1 0 0 1 1 1 0 YhfH-like protein Ral PF11058.8 gi|134045497|ref|YP_001096983.1| - 0.094 12.3 0.1 0.23 11.0 0.1 1.6 1 0 0 1 1 1 0 Antirestriction protein Ral Lar_restr_allev PF14354.6 gi|134045497|ref|YP_001096983.1| - 0.12 12.8 1.7 5.3 7.5 0.2 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar DnaJ_CXXCXGXG PF00684.19 gi|134045497|ref|YP_001096983.1| - 0.12 12.7 0.3 0.25 11.7 0.3 1.5 1 0 0 1 1 1 0 DnaJ central domain Zn-ribbon_8 PF09723.10 gi|134045497|ref|YP_001096983.1| - 0.15 12.2 4.0 0.071 13.2 1.0 2.0 2 0 0 2 2 2 0 Zinc ribbon domain ArsC PF03960.15 gi|134045497|ref|YP_001096983.1| - 0.21 11.6 0.7 26 4.9 0.0 2.4 2 0 0 2 2 2 0 ArsC family Rad50_zn_hook PF04423.14 gi|134045497|ref|YP_001096983.1| - 4.2 7.3 6.7 0.49 10.3 0.2 2.9 3 0 0 3 3 3 0 Rad50 zinc hook motif UPF0047 PF01894.17 gi|134045498|ref|YP_001096984.1| - 2.8e-39 133.9 0.0 3.2e-39 133.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Pro_isomerase PF00160.21 gi|134045499|ref|YP_001096985.1| - 2.2e-46 158.0 2.8 2.5e-46 157.8 2.8 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Pro_isomerase PF00160.21 gi|134045500|ref|YP_001096986.1| - 1.2e-44 152.4 2.0 1.4e-44 152.2 2.0 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Tex_N PF09371.10 gi|134045501|ref|YP_001096987.1| - 4.3e-67 225.3 6.1 1e-66 224.1 6.1 1.7 1 0 0 1 1 1 1 Tex-like protein N-terminal domain Tex_YqgF PF16921.5 gi|134045501|ref|YP_001096987.1| - 3.2e-56 189.2 0.4 8.5e-56 187.8 0.4 1.8 1 0 0 1 1 1 1 Tex protein YqgF-like domain HHH_3 PF12836.7 gi|134045501|ref|YP_001096987.1| - 5.1e-28 97.1 2.7 6.9e-28 96.7 0.2 2.7 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_9 PF17674.1 gi|134045501|ref|YP_001096987.1| - 7.1e-24 84.5 3.1 2.2e-23 82.9 0.3 3.3 3 0 0 3 3 3 1 HHH domain S1 PF00575.23 gi|134045501|ref|YP_001096987.1| - 3.9e-17 62.3 2.0 3.9e-17 62.3 2.0 2.2 3 0 0 3 3 3 1 S1 RNA binding domain HHH_7 PF14635.6 gi|134045501|ref|YP_001096987.1| - 5.3e-10 39.6 0.6 2.1e-09 37.7 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif YqgF PF14639.6 gi|134045501|ref|YP_001096987.1| - 9e-09 35.3 3.3 2.2e-08 34.0 0.6 2.9 2 1 0 2 2 2 1 Holliday-junction resolvase-like of SPT6 NAD_Gly3P_dh_N PF01210.23 gi|134045501|ref|YP_001096987.1| - 0.042 13.8 1.3 0.41 10.6 0.2 2.7 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KIP1 PF07765.12 gi|134045501|ref|YP_001096987.1| - 0.046 13.8 0.8 0.21 11.7 0.8 2.1 1 0 0 1 1 1 0 KIP1-like protein HHH_6 PF14579.6 gi|134045501|ref|YP_001096987.1| - 0.047 13.9 0.2 0.27 11.5 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif Methyltr_RsmB-F PF01189.17 gi|134045502|ref|YP_001096988.1| - 2.9e-59 200.1 0.1 3.8e-59 199.7 0.1 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|134045502|ref|YP_001096988.1| - 6e-10 39.1 0.3 9e-10 38.6 0.3 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|134045502|ref|YP_001096988.1| - 1.3e-06 28.8 0.0 6.7e-05 23.3 0.0 2.4 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|134045502|ref|YP_001096988.1| - 1.4e-05 25.3 0.0 2.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|134045502|ref|YP_001096988.1| - 3.3e-05 23.4 0.4 0.00032 20.2 0.1 2.3 3 0 0 3 3 3 1 Putative methyltransferase Ubie_methyltran PF01209.18 gi|134045502|ref|YP_001096988.1| - 4.4e-05 22.9 0.2 0.00018 20.9 0.2 2.0 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family DUF2431 PF10354.9 gi|134045502|ref|YP_001096988.1| - 0.0001 22.6 0.0 0.00015 22.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2431) Methyltransf_25 PF13649.6 gi|134045502|ref|YP_001096988.1| - 0.00028 21.5 0.0 0.0019 18.9 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|134045502|ref|YP_001096988.1| - 0.0018 17.9 0.2 0.013 15.1 0.2 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|134045502|ref|YP_001096988.1| - 0.0024 17.5 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|134045502|ref|YP_001096988.1| - 0.0095 15.6 0.2 0.02 14.5 0.0 1.7 2 0 0 2 2 2 1 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.11 gi|134045502|ref|YP_001096988.1| - 0.048 12.6 1.6 0.087 11.8 0.4 2.1 2 1 0 2 2 2 0 tRNA (Uracil-5-)-methyltransferase Met_10 PF02475.16 gi|134045502|ref|YP_001096988.1| - 0.068 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein DUF4116 PF13475.6 gi|134045502|ref|YP_001096988.1| - 0.072 12.8 0.7 0.19 11.5 0.1 2.1 2 0 0 2 2 1 0 Domain of unknown function (DUF4116) Fibrillarin PF01269.17 gi|134045502|ref|YP_001096988.1| - 0.093 11.8 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin motB PF17613.2 gi|134045502|ref|YP_001096988.1| - 0.13 12.1 0.1 0.44 10.4 0.0 1.8 1 1 0 1 1 1 0 Modifier of transcription PCMT PF01135.19 gi|134045502|ref|YP_001096988.1| - 0.19 11.5 0.0 0.76 9.5 0.0 1.8 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Exosortase_EpsH PF09721.10 gi|134045503|ref|YP_001096989.1| - 4.4e-11 42.8 8.0 5.2e-11 42.6 8.0 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) PIG-P PF08510.12 gi|134045503|ref|YP_001096989.1| - 0.57 10.1 8.5 0.095 12.6 4.3 1.9 2 1 0 2 2 2 0 PIG-P AIRS PF00586.24 gi|134045504|ref|YP_001096990.1| - 7.3e-22 77.8 0.0 1.3e-20 73.8 0.0 2.2 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Radical_SAM PF04055.21 gi|134045505|ref|YP_001096991.1| - 5.6e-17 62.6 0.1 1.4e-16 61.3 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|134045505|ref|YP_001096991.1| - 1.6e-05 24.9 0.0 4.8e-05 23.4 0.0 1.8 1 0 0 1 1 1 1 B12 binding domain Vps53_N PF04100.12 gi|134045505|ref|YP_001096991.1| - 0.0035 16.4 0.8 1.4 7.8 0.1 2.2 2 0 0 2 2 2 2 Vps53-like, N-terminal DUF2408 PF10303.9 gi|134045505|ref|YP_001096991.1| - 0.019 15.6 0.2 0.042 14.4 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) MMR_HSR1_C PF08438.10 gi|134045506|ref|YP_001096992.1| - 5.7e-33 113.8 0.9 1.5e-32 112.5 0.2 2.0 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|134045506|ref|YP_001096992.1| - 1.2e-22 80.2 0.1 8.8e-22 77.3 0.0 2.5 2 1 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|134045506|ref|YP_001096992.1| - 4e-13 49.2 0.1 8e-13 48.2 0.1 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|134045506|ref|YP_001096992.1| - 1.5e-09 37.6 0.8 8.4e-08 31.9 0.3 2.6 2 0 0 2 2 2 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|134045506|ref|YP_001096992.1| - 0.00064 19.9 2.1 0.045 13.9 0.1 3.0 2 1 1 3 3 3 1 Protein of unknown function (DUF933) GTP_EFTU PF00009.27 gi|134045506|ref|YP_001096992.1| - 0.0067 16.0 2.3 1.4 8.5 0.1 3.4 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain MeaB PF03308.16 gi|134045506|ref|YP_001096992.1| - 0.01 14.8 0.1 0.21 10.6 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Arf PF00025.21 gi|134045506|ref|YP_001096992.1| - 0.039 13.4 0.4 0.77 9.2 0.1 2.9 4 0 0 4 4 4 0 ADP-ribosylation factor family HD PF01966.22 gi|134045507|ref|YP_001096993.1| - 0.00044 20.5 0.4 0.00086 19.5 0.2 1.5 1 1 0 1 1 1 1 HD domain Phage_term_smal PF05944.12 gi|134045507|ref|YP_001096993.1| - 0.097 12.6 0.7 0.17 11.9 0.0 1.8 2 0 0 2 2 2 0 Phage small terminase subunit IL15 PF02372.15 gi|134045507|ref|YP_001096993.1| - 0.45 10.5 6.5 0.31 11.0 1.4 2.3 2 0 0 2 2 2 0 Interleukin 15 HATPase_c PF02518.26 gi|134045508|ref|YP_001096994.1| - 3.8e-32 111.1 1.9 9.4e-32 109.8 0.3 2.4 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase sCache_3_3 PF17202.4 gi|134045508|ref|YP_001096994.1| - 1.1e-23 83.6 2.3 1.5e-23 83.3 0.3 2.2 2 0 0 2 2 2 1 Single cache domain 3 dCache_3 PF14827.6 gi|134045508|ref|YP_001096994.1| - 6e-20 71.9 0.6 1.4e-19 70.7 0.1 1.9 2 0 0 2 2 2 1 Double sensory domain of two-component sensor kinase HisKA PF00512.25 gi|134045508|ref|YP_001096994.1| - 4e-19 68.4 0.9 2.1e-18 66.1 0.5 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Cache_3-Cache_2 PF17201.4 gi|134045508|ref|YP_001096994.1| - 1.2e-17 64.2 1.0 4.3e-17 62.3 0.2 2.2 1 1 0 2 2 2 1 Cache 3/Cache 2 fusion domain HAMP PF00672.25 gi|134045508|ref|YP_001096994.1| - 8.2e-10 38.9 0.0 1.7e-09 37.9 0.0 1.6 1 0 0 1 1 1 1 HAMP domain sCache_3_2 PF17203.4 gi|134045508|ref|YP_001096994.1| - 1.1e-07 32.0 0.3 0.00026 21.1 0.0 3.0 1 1 0 2 2 2 2 Single cache domain 3 HATPase_c_3 PF13589.6 gi|134045508|ref|YP_001096994.1| - 5.2e-06 26.3 0.1 1.4e-05 24.9 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|134045508|ref|YP_001096994.1| - 1.4e-05 24.9 0.1 4.9e-05 23.2 0.1 2.0 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|134045508|ref|YP_001096994.1| - 0.015 15.3 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF4446 PF14584.6 gi|134045508|ref|YP_001096994.1| - 0.019 15.0 5.7 0.042 13.8 0.1 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4446) Seryl_tRNA_N PF02403.22 gi|134045508|ref|YP_001096994.1| - 0.021 15.0 2.0 0.051 13.8 1.3 2.1 2 0 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain ACP_PD PF04336.12 gi|134045508|ref|YP_001096994.1| - 0.06 13.8 0.5 2.2 8.7 0.1 2.9 3 1 0 3 3 2 0 Acyl carrier protein phosphodiesterase Nsp1_C PF05064.13 gi|134045508|ref|YP_001096994.1| - 0.062 13.1 0.5 0.24 11.2 0.1 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region VMA21 PF09446.10 gi|134045508|ref|YP_001096994.1| - 0.15 12.2 2.9 0.29 11.3 0.1 2.4 2 0 0 2 2 2 0 VMA21-like domain zf-ribbon_3 PF13248.6 gi|134045509|ref|YP_001096995.1| - 0.014 14.7 13.1 0.37 10.3 0.8 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|134045509|ref|YP_001096995.1| - 0.022 15.2 13.4 0.03 14.8 0.3 3.8 4 0 0 4 4 3 0 Zinc finger, C2H2 type zf-C2H2_jaz PF12171.8 gi|134045509|ref|YP_001096995.1| - 0.053 13.8 0.5 0.053 13.8 0.5 3.6 5 0 0 5 5 5 0 Zinc-finger double-stranded RNA-binding Anti-TRAP PF15777.5 gi|134045509|ref|YP_001096995.1| - 0.056 13.4 7.1 1.5 8.9 0.2 2.4 2 1 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-C2H2_4 PF13894.6 gi|134045509|ref|YP_001096995.1| - 0.092 13.6 12.2 0.14 13.0 0.3 3.7 3 0 0 3 3 3 0 C2H2-type zinc finger zinc_ribbon_9 PF14369.6 gi|134045509|ref|YP_001096995.1| - 0.13 12.5 0.1 0.13 12.5 0.1 3.3 2 1 1 3 3 3 0 zinc-ribbon IBR PF01485.21 gi|134045509|ref|YP_001096995.1| - 0.14 12.4 13.3 0.059 13.6 6.8 2.3 2 1 0 2 2 2 0 IBR domain, a half RING-finger domain tRNA-synt_1g PF09334.11 gi|134045509|ref|YP_001096995.1| - 0.22 10.3 6.0 0.036 12.8 2.4 1.5 1 1 1 2 2 2 0 tRNA synthetases class I (M) TF_Zn_Ribbon PF08271.12 gi|134045509|ref|YP_001096995.1| - 0.61 9.7 13.6 3.4 7.2 0.4 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding Mu-like_Com PF10122.9 gi|134045509|ref|YP_001096995.1| - 0.76 9.3 4.8 0.46 10.0 0.5 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com DUF3797 PF12677.7 gi|134045509|ref|YP_001096995.1| - 0.82 9.6 11.5 1.4 8.9 0.9 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) zf-H2C2_2 PF13465.6 gi|134045509|ref|YP_001096995.1| - 1 9.9 18.0 0.77 10.3 3.6 3.6 3 1 0 3 3 3 0 Zinc-finger double domain DUF2614 PF11023.8 gi|134045509|ref|YP_001096995.1| - 1.2 9.2 3.9 12 6.0 0.1 2.4 1 1 1 2 2 2 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|134045509|ref|YP_001096995.1| - 1.6 9.0 11.2 1.2 9.3 3.2 2.6 2 1 0 2 2 2 0 Zinc ribbon domain zf-AN1 PF01428.16 gi|134045509|ref|YP_001096995.1| - 2.4 8.4 14.4 3.2 8.0 1.1 3.3 2 1 1 3 3 3 0 AN1-like Zinc finger OrfB_Zn_ribbon PF07282.11 gi|134045509|ref|YP_001096995.1| - 2.7 8.0 9.3 0.38 10.7 2.9 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain C1_4 PF07975.12 gi|134045509|ref|YP_001096995.1| - 2.9 8.2 11.1 1.3 9.3 3.5 2.8 2 1 1 3 3 3 0 TFIIH C1-like domain Sgf11 PF08209.11 gi|134045509|ref|YP_001096995.1| - 3.3 7.3 12.9 0.49 10.0 1.1 3.6 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) TRAF6_Z2 PF18048.1 gi|134045509|ref|YP_001096995.1| - 4 7.6 11.3 0.75 9.9 1.4 3.2 2 1 1 3 3 3 0 TNF receptor-associated factor 6 zinc finger 2 Lar_restr_allev PF14354.6 gi|134045509|ref|YP_001096995.1| - 4.5 7.7 12.4 1.3e+02 3.0 12.4 2.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-RING_7 PF02591.15 gi|134045509|ref|YP_001096995.1| - 4.5 7.5 8.5 20 5.5 0.2 3.2 3 0 0 3 3 3 0 C4-type zinc ribbon domain YacG PF03884.14 gi|134045509|ref|YP_001096995.1| - 4.8 7.0 14.3 19 5.1 0.5 3.3 3 0 0 3 3 3 0 DNA gyrase inhibitor YacG Rad50_zn_hook PF04423.14 gi|134045509|ref|YP_001096995.1| - 6.7 6.6 8.4 2.5 8.0 0.1 3.2 2 1 1 3 3 3 0 Rad50 zinc hook motif zf-Di19 PF05605.12 gi|134045509|ref|YP_001096995.1| - 7.6 6.9 13.7 4.8 7.6 1.6 3.3 2 1 1 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding CxxCxxCC PF03692.15 gi|134045510|ref|YP_001096996.1| - 2.5e-15 56.9 1.7 3.9e-15 56.3 1.7 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Peptidase_M42 PF05343.14 gi|134045511|ref|YP_001096997.1| - 8.6e-108 359.8 4.0 9.9e-108 359.6 4.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|134045511|ref|YP_001096997.1| - 8.5e-11 41.9 0.1 1.3e-10 41.3 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|134045511|ref|YP_001096997.1| - 0.00011 22.0 0.0 0.0019 17.9 0.0 2.6 2 1 0 2 2 2 1 Peptidase family M28 Transketolase_N PF00456.21 gi|134045512|ref|YP_001096998.1| - 1.2e-55 188.8 0.0 1.9e-55 188.2 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|134045512|ref|YP_001096998.1| - 1.7e-09 37.3 0.1 9.6e-07 28.3 0.0 2.3 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase XFP_N PF09364.10 gi|134045512|ref|YP_001096998.1| - 2.3e-05 23.4 0.1 3.4e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 XFP N-terminal domain E1_dh PF00676.20 gi|134045512|ref|YP_001096998.1| - 6.1e-05 22.1 0.1 8.4e-05 21.7 0.1 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 gi|134045512|ref|YP_001096998.1| - 0.0013 18.6 0.1 0.0082 15.9 0.1 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ribul_P_3_epim PF00834.19 gi|134045513|ref|YP_001096999.1| - 7.2e-73 244.2 0.4 8.3e-73 244.0 0.4 1.0 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family OMPdecase PF00215.24 gi|134045513|ref|YP_001096999.1| - 0.015 14.9 0.1 0.031 13.9 0.1 1.4 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.17 gi|134045513|ref|YP_001096999.1| - 0.018 14.5 0.5 0.039 13.4 0.4 1.6 1 1 0 1 1 1 0 PcrB family TMP-TENI PF02581.17 gi|134045513|ref|YP_001096999.1| - 0.026 13.9 0.1 0.095 12.0 0.0 1.8 2 0 0 2 2 2 0 Thiamine monophosphate synthase ThiG PF05690.14 gi|134045513|ref|YP_001096999.1| - 0.05 12.9 0.1 0.075 12.3 0.1 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|134045513|ref|YP_001096999.1| - 0.093 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein Transket_pyr PF02779.24 gi|134045514|ref|YP_001097000.1| - 1.4e-42 145.3 0.1 2e-42 144.9 0.1 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|134045514|ref|YP_001097000.1| - 4.5e-30 104.1 0.1 7.2e-30 103.4 0.1 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain Regulator_TrmB PF11495.8 gi|134045515|ref|YP_001097001.1| - 4.2e-06 26.1 0.0 7.2e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB O_anti_polymase PF01901.16 gi|134045516|ref|YP_001097002.1| - 3.7e-94 315.7 35.9 4.4e-94 315.5 35.9 1.1 1 0 0 1 1 1 1 Putative O-antigen polymerase ETRAMP PF09716.10 gi|134045516|ref|YP_001097002.1| - 0.57 10.3 2.6 19 5.4 0.4 2.8 1 1 1 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) O_anti_polymase PF01901.16 gi|134045517|ref|YP_001097003.1| - 3.1e-72 243.7 55.5 4.8e-72 243.0 55.5 1.3 1 1 0 1 1 1 1 Putative O-antigen polymerase DUF1689 PF07954.11 gi|134045517|ref|YP_001097003.1| - 9 6.7 8.2 13 6.2 0.5 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1689) DUF373 PF04123.13 gi|134045518|ref|YP_001097004.1| - 1.1e-83 281.4 12.1 1.3e-83 281.2 12.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Chordopox_L2 PF05803.12 gi|134045518|ref|YP_001097004.1| - 2.2 8.2 9.7 0.69 9.8 5.9 2.2 2 0 0 2 2 2 0 Chordopoxvirus L2 protein Phage_holin_5_2 PF16079.5 gi|134045518|ref|YP_001097004.1| - 8.6 6.8 7.8 0.48 10.8 1.5 2.3 3 0 0 3 3 3 0 Phage holin family Hol44, in holin superfamily V CorA PF01544.18 gi|134045519|ref|YP_001097005.1| - 1.4e-63 214.9 9.7 1.7e-63 214.7 9.7 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF4212 PF13937.6 gi|134045519|ref|YP_001097005.1| - 0.07 13.5 3.0 0.18 12.2 3.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) Internalin_N PF12354.8 gi|134045519|ref|YP_001097005.1| - 0.091 12.9 0.3 0.22 11.6 0.3 1.6 1 0 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal DUF489 PF04356.12 gi|134045519|ref|YP_001097005.1| - 0.23 11.5 2.0 0.34 10.9 2.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF489) DUF996 PF06195.13 gi|134045519|ref|YP_001097005.1| - 1.9 8.8 9.0 21 5.4 9.0 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF996) SRP19 PF01922.17 gi|134045520|ref|YP_001097006.1| - 1.5e-22 80.3 0.2 1.7e-22 80.2 0.2 1.0 1 0 0 1 1 1 1 SRP19 protein DUF3801 PF12687.7 gi|134045520|ref|YP_001097006.1| - 0.007 16.4 0.4 0.0074 16.4 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3801) ZapB PF06005.12 gi|134045521|ref|YP_001097007.1| - 0.00018 21.9 7.3 0.00029 21.2 7.3 1.3 1 0 0 1 1 1 1 Cell division protein ZapB LRRFIP PF09738.9 gi|134045521|ref|YP_001097007.1| - 0.014 14.9 14.9 0.015 14.8 14.9 1.0 1 0 0 1 1 1 0 LRRFIP family SlyX PF04102.12 gi|134045521|ref|YP_001097007.1| - 0.03 14.9 1.2 0.11 13.1 1.2 1.9 1 1 0 1 1 1 0 SlyX HIP1_clath_bdg PF16515.5 gi|134045521|ref|YP_001097007.1| - 0.061 13.9 5.7 0.035 14.7 3.9 1.6 1 1 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Spc7 PF08317.11 gi|134045521|ref|YP_001097007.1| - 0.15 11.0 11.6 0.19 10.6 11.6 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein TMF_TATA_bd PF12325.8 gi|134045521|ref|YP_001097007.1| - 0.2 11.9 12.3 0.14 12.4 9.9 1.7 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding APG6_N PF17675.1 gi|134045521|ref|YP_001097007.1| - 1.1 9.8 16.1 1.3 9.6 16.1 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region V_ATPase_I PF01496.19 gi|134045521|ref|YP_001097007.1| - 2 6.3 7.3 2 6.2 7.3 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ATP-grasp_2 PF08442.10 gi|134045522|ref|YP_001097008.1| - 6.9e-58 195.5 3.5 7.1e-58 195.5 2.3 1.6 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|134045522|ref|YP_001097008.1| - 1.8e-10 40.9 0.9 2.8e-10 40.2 0.1 1.8 2 0 0 2 2 2 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|134045522|ref|YP_001097008.1| - 1.3e-08 34.5 0.6 2.5e-08 33.6 0.6 1.5 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|134045522|ref|YP_001097008.1| - 5.3e-05 22.8 0.1 7.9e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|134045522|ref|YP_001097008.1| - 0.018 14.8 0.8 0.16 11.7 0.8 2.3 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DUF5097 PF17020.5 gi|134045522|ref|YP_001097008.1| - 0.043 14.2 0.2 0.088 13.2 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5097) DUF3879 PF12995.7 gi|134045522|ref|YP_001097008.1| - 0.085 12.6 0.0 0.35 10.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function, E. rectale Gene description (DUF3879) PyrI PF01948.18 gi|134045523|ref|YP_001097009.1| - 4.2e-29 100.7 6.5 4.2e-29 100.7 6.5 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|134045523|ref|YP_001097009.1| - 5.1e-17 61.5 9.3 5.1e-17 61.5 9.3 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Big_8 PF17961.1 gi|134045523|ref|YP_001097009.1| - 0.018 15.2 0.2 0.03 14.5 0.2 1.5 1 0 0 1 1 1 0 Bacterial Ig domain TfuA PF07812.12 gi|134045524|ref|YP_001097010.1| - 5.5e-41 139.1 0.0 8.7e-41 138.4 0.0 1.3 1 0 0 1 1 1 1 TfuA-like protein Phage_int_SAM_5 PF13102.6 gi|134045524|ref|YP_001097010.1| - 0.039 14.3 0.4 0.41 11.0 0.0 2.4 1 1 1 2 2 2 0 Phage integrase SAM-like domain PLDc_2 PF13091.6 gi|134045525|ref|YP_001097011.1| - 1.4e-22 80.0 1.5 1.8e-22 79.6 1.5 1.2 1 0 0 1 1 1 1 PLD-like domain PP_kinase_C_1 PF17941.1 gi|134045525|ref|YP_001097011.1| - 0.0005 19.7 0.5 0.00073 19.1 0.5 1.3 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 PLDc PF00614.22 gi|134045525|ref|YP_001097011.1| - 0.0056 16.8 0.5 0.0099 16.0 0.5 1.4 1 0 0 1 1 1 1 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|134045525|ref|YP_001097011.1| - 0.022 13.9 0.5 0.026 13.7 0.5 1.1 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB Frigida PF07899.11 gi|134045525|ref|YP_001097011.1| - 0.038 13.3 0.2 0.048 12.9 0.2 1.2 1 0 0 1 1 1 0 Frigida-like protein H2TH PF06831.14 gi|134045525|ref|YP_001097011.1| - 0.07 13.1 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Formamidopyrimidine-DNA glycosylase H2TH domain Aminotran_3 PF00202.21 gi|134045526|ref|YP_001097012.1| - 5.7e-126 420.4 0.1 6.6e-126 420.2 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|134045526|ref|YP_001097012.1| - 4.2e-07 29.5 0.0 6e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|134045526|ref|YP_001097012.1| - 4.4e-05 22.8 0.0 0.00013 21.3 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|134045526|ref|YP_001097012.1| - 0.006 15.9 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|134045526|ref|YP_001097012.1| - 0.012 14.6 0.0 0.017 14.1 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V AAA_11 PF13086.6 gi|134045526|ref|YP_001097012.1| - 0.036 13.9 0.0 0.057 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain TrmB PF01978.19 gi|134045527|ref|YP_001097013.1| - 6e-08 32.5 0.4 1.2e-07 31.5 0.4 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|134045527|ref|YP_001097013.1| - 0.0002 20.9 0.0 0.00072 19.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|134045527|ref|YP_001097013.1| - 0.0004 20.2 0.0 0.0008 19.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF1495 PF07381.11 gi|134045527|ref|YP_001097013.1| - 0.001 18.9 0.3 0.0037 17.0 0.1 1.9 1 1 1 2 2 2 1 Winged helix DNA-binding domain (DUF1495) HTH_IclR PF09339.10 gi|134045527|ref|YP_001097013.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|134045527|ref|YP_001097013.1| - 0.021 15.0 0.1 0.069 13.4 0.1 2.0 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Lge1 PF11488.8 gi|134045527|ref|YP_001097013.1| - 0.052 13.7 0.7 9.2 6.5 0.1 2.4 2 0 0 2 2 2 0 Transcriptional regulatory protein LGE1 DUF1904 PF08921.11 gi|134045527|ref|YP_001097013.1| - 0.055 13.8 0.6 4.4 7.6 0.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF1904) HTH_9 PF08221.11 gi|134045527|ref|YP_001097013.1| - 0.076 13.1 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|134045527|ref|YP_001097013.1| - 0.11 12.8 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.7 gi|134045527|ref|YP_001097013.1| - 0.18 11.7 0.0 0.36 10.8 0.0 1.5 1 0 0 1 1 1 0 MarR family PhoU PF01895.19 gi|134045528|ref|YP_001097014.1| - 4.9e-32 110.2 7.4 6.3e-19 68.2 4.8 2.2 2 0 0 2 2 2 2 PhoU domain BAR_3 PF16746.5 gi|134045528|ref|YP_001097014.1| - 4.1 7.0 8.1 5.1 6.7 0.2 2.5 2 1 1 3 3 3 0 BAR domain of APPL family ABC_tran PF00005.27 gi|134045529|ref|YP_001097015.1| - 4.1e-30 105.1 0.0 5.6e-30 104.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|134045529|ref|YP_001097015.1| - 3e-09 37.1 0.2 0.00013 21.9 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|134045529|ref|YP_001097015.1| - 3.7e-06 26.5 0.2 0.00047 19.7 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|134045529|ref|YP_001097015.1| - 1.4e-05 25.0 0.0 3.8e-05 23.6 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|134045529|ref|YP_001097015.1| - 0.00014 22.4 0.1 0.00026 21.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|134045529|ref|YP_001097015.1| - 0.00039 20.4 0.0 0.00087 19.2 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|134045529|ref|YP_001097015.1| - 0.00094 19.2 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|134045529|ref|YP_001097015.1| - 0.0012 18.5 0.1 0.0041 16.8 0.0 1.9 1 1 1 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|134045529|ref|YP_001097015.1| - 0.0014 18.9 0.0 0.0025 18.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|134045529|ref|YP_001097015.1| - 0.0058 17.0 0.0 0.0084 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|134045529|ref|YP_001097015.1| - 0.023 15.3 0.0 0.053 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|134045529|ref|YP_001097015.1| - 0.059 13.1 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ITI_HC_C PF06668.12 gi|134045529|ref|YP_001097015.1| - 0.076 12.7 0.0 0.2 11.3 0.0 1.8 2 0 0 2 2 2 0 Inter-alpha-trypsin inhibitor heavy chain C-terminus AAA_33 PF13671.6 gi|134045529|ref|YP_001097015.1| - 0.091 12.9 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|134045529|ref|YP_001097015.1| - 0.095 11.5 0.1 0.45 9.3 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.22 gi|134045530|ref|YP_001097016.1| - 2.6e-22 79.5 16.6 2.6e-22 79.5 16.6 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Sigma_reg_N PF13800.6 gi|134045530|ref|YP_001097016.1| - 0.27 11.5 0.0 0.27 11.5 0.0 3.5 3 0 0 3 3 3 0 Sigma factor regulator N-terminal CrgA PF06781.12 gi|134045530|ref|YP_001097016.1| - 2.2 8.4 4.7 1.2 9.2 0.1 2.9 3 0 0 3 3 3 0 Cell division protein CrgA DUF5383 PF17355.2 gi|134045530|ref|YP_001097016.1| - 4.7 7.6 4.6 3.9 7.8 0.5 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5383) DUF1772 PF08592.11 gi|134045530|ref|YP_001097016.1| - 7 7.0 14.5 0.78 10.1 1.0 3.2 1 1 3 4 4 4 0 Domain of unknown function (DUF1772) BPD_transp_1 PF00528.22 gi|134045531|ref|YP_001097017.1| - 5.6e-32 111.0 12.2 5.6e-32 111.0 12.2 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|134045532|ref|YP_001097018.1| - 6.7e-40 137.5 2.0 7.5e-39 134.1 2.0 1.9 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|134045532|ref|YP_001097018.1| - 4.8e-17 61.7 0.1 6.5e-17 61.3 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|134045532|ref|YP_001097018.1| - 4.1e-07 30.0 0.0 4.1e-06 26.7 0.0 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|134045532|ref|YP_001097018.1| - 3.1e-06 26.8 0.0 4.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|134045532|ref|YP_001097018.1| - 0.0085 15.9 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|134045532|ref|YP_001097018.1| - 0.012 15.5 0.0 0.033 14.2 0.0 1.6 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein Peptidase_S80 PF07230.11 gi|134045532|ref|YP_001097018.1| - 0.11 10.8 0.0 0.14 10.4 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage T4-like capsid assembly protein (Gp20) PPDK_N PF01326.19 gi|134045533|ref|YP_001097019.1| - 2.1e-118 395.3 1.4 3.6e-118 394.6 1.4 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|134045533|ref|YP_001097019.1| - 3.4e-87 292.3 0.2 7.1e-87 291.2 0.2 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|134045533|ref|YP_001097019.1| - 3.6e-26 90.7 1.3 1.1e-25 89.2 1.3 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|134045533|ref|YP_001097019.1| - 0.0001 21.5 0.3 0.00025 20.3 0.3 1.6 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family RNA_pol_Rpb1_7 PF04990.12 gi|134045533|ref|YP_001097019.1| - 0.014 15.4 0.7 0.032 14.2 0.7 1.6 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 7 Epimerase_2 PF02350.19 gi|134045533|ref|YP_001097019.1| - 0.018 13.9 0.0 0.04 12.8 0.0 1.7 1 1 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase CTP_transf_like PF01467.26 gi|134045534|ref|YP_001097020.1| - 6e-13 49.2 0.0 7e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like PTS_IIB PF02302.17 gi|134045534|ref|YP_001097020.1| - 0.0078 16.9 0.2 0.011 16.4 0.2 1.3 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit Propep_M14 PF02244.16 gi|134045534|ref|YP_001097020.1| - 0.042 14.3 0.2 3.8 8.0 0.1 2.4 2 0 0 2 2 2 0 Carboxypeptidase activation peptide FAD_syn PF06574.12 gi|134045534|ref|YP_001097020.1| - 0.048 13.5 1.3 0.1 12.5 1.3 1.7 1 1 0 1 1 1 0 FAD synthetase Mem_trans PF03547.18 gi|134045535|ref|YP_001097021.1| - 2.9e-39 134.6 30.8 4.8e-21 74.6 7.1 2.1 1 1 1 2 2 2 2 Membrane transport protein PRTase_3 PF15610.6 gi|134045535|ref|YP_001097021.1| - 0.1 11.8 0.1 0.16 11.2 0.1 1.2 1 0 0 1 1 1 0 PRTase ComF-like Phage_holin_5_2 PF16079.5 gi|134045535|ref|YP_001097021.1| - 1.9 8.9 15.6 0.45 10.9 1.1 3.8 3 3 1 4 4 4 0 Phage holin family Hol44, in holin superfamily V DDDD PF10161.9 gi|134045535|ref|YP_001097021.1| - 3.6 7.4 5.9 17 5.2 0.1 3.2 3 0 0 3 3 3 0 Putative mitochondrial precursor protein NTP_transferase PF00483.23 gi|134045536|ref|YP_001097022.1| - 1.6e-33 116.3 0.0 2.4e-33 115.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|134045536|ref|YP_001097022.1| - 6.6e-11 42.8 0.0 8.5e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|134045536|ref|YP_001097022.1| - 0.0003 20.6 0.0 0.00076 19.3 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|134045536|ref|YP_001097022.1| - 0.0028 17.5 0.0 0.0043 16.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Epimerase PF01370.21 gi|134045537|ref|YP_001097023.1| - 1.1e-58 198.5 0.0 1.4e-58 198.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|134045537|ref|YP_001097023.1| - 1.4e-57 195.6 0.0 9e-57 192.9 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|134045537|ref|YP_001097023.1| - 3.1e-28 98.6 0.0 4.1e-28 98.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|134045537|ref|YP_001097023.1| - 2.7e-15 56.2 0.0 3.2e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|134045537|ref|YP_001097023.1| - 5.7e-15 55.2 0.1 2.5e-13 49.8 0.1 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|134045537|ref|YP_001097023.1| - 1.8e-14 53.5 0.0 1.6e-10 40.6 0.0 2.6 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|134045537|ref|YP_001097023.1| - 3.6e-09 36.8 0.0 7e-09 35.8 0.0 1.6 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|134045537|ref|YP_001097023.1| - 1.4e-07 31.4 0.0 2.9e-07 30.3 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|134045537|ref|YP_001097023.1| - 0.0028 17.1 0.4 0.028 13.9 0.0 2.5 1 1 1 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|134045537|ref|YP_001097023.1| - 0.032 14.1 0.1 0.27 11.1 0.1 2.0 1 1 0 2 2 2 0 KR domain 3HCDH_N PF02737.18 gi|134045537|ref|YP_001097023.1| - 0.072 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF3782 PF12644.7 gi|134045537|ref|YP_001097023.1| - 0.15 12.3 0.5 1.7 8.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) UDPG_MGDP_dh_N PF03721.14 gi|134045538|ref|YP_001097024.1| - 2e-57 193.8 0.0 4.6e-57 192.6 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|134045538|ref|YP_001097024.1| - 1.1e-33 115.3 0.1 2.1e-33 114.4 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|134045538|ref|YP_001097024.1| - 1.1e-22 80.4 0.1 3.9e-22 78.7 0.1 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|134045538|ref|YP_001097024.1| - 5.1e-06 26.8 0.0 0.00031 20.9 0.0 2.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|134045538|ref|YP_001097024.1| - 0.00022 21.7 0.1 0.11 13.0 0.0 3.8 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|134045538|ref|YP_001097024.1| - 0.0053 16.7 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|134045538|ref|YP_001097024.1| - 0.017 14.5 0.1 0.16 11.3 0.0 2.5 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|134045538|ref|YP_001097024.1| - 0.055 13.4 0.0 2.1 8.4 0.0 2.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|134045538|ref|YP_001097024.1| - 0.15 11.3 0.1 0.32 10.3 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Epimerase PF01370.21 gi|134045539|ref|YP_001097025.1| - 7.3e-56 189.3 0.0 8.8e-56 189.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|134045539|ref|YP_001097025.1| - 3.2e-54 184.6 0.0 8e-54 183.2 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|134045539|ref|YP_001097025.1| - 6e-18 65.0 0.0 4.3e-17 62.2 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|134045539|ref|YP_001097025.1| - 9.2e-16 57.8 0.0 1.1e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|134045539|ref|YP_001097025.1| - 1.3e-15 57.2 0.1 1.6e-15 56.8 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|134045539|ref|YP_001097025.1| - 1.9e-07 30.5 0.0 1.4e-06 27.7 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|134045539|ref|YP_001097025.1| - 0.0097 15.8 0.0 0.026 14.4 0.0 1.6 1 1 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|134045539|ref|YP_001097025.1| - 0.015 14.8 0.0 0.031 13.7 0.0 1.6 1 0 0 1 1 1 0 short chain dehydrogenase Ldh_1_N PF00056.23 gi|134045539|ref|YP_001097025.1| - 0.023 14.8 0.2 0.066 13.3 0.0 1.9 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|134045539|ref|YP_001097025.1| - 0.041 14.1 0.0 0.078 13.2 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|134045539|ref|YP_001097025.1| - 0.21 11.5 0.0 0.97 9.3 0.0 2.0 1 1 0 1 1 1 0 KR domain Asn_synthase PF00733.21 gi|134045540|ref|YP_001097026.1| - 8e-76 256.0 0.0 1.2e-75 255.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|134045540|ref|YP_001097026.1| - 1.3e-41 141.3 0.0 9.9e-41 138.5 0.0 2.3 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|134045540|ref|YP_001097026.1| - 1.7e-36 125.4 0.0 4e-36 124.2 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|134045540|ref|YP_001097026.1| - 0.0061 16.0 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 Aluminium induced protein Glycos_transf_1 PF00534.20 gi|134045541|ref|YP_001097027.1| - 4.8e-28 97.8 1.4 2.9e-27 95.3 1.3 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|134045541|ref|YP_001097027.1| - 6.4e-19 68.7 0.0 1.3e-18 67.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|134045541|ref|YP_001097027.1| - 1.6e-13 51.1 0.0 2.7e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|134045541|ref|YP_001097027.1| - 1.4e-10 41.4 0.3 8.8e-09 35.5 0.2 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|134045541|ref|YP_001097027.1| - 0.0029 18.0 0.0 0.0056 17.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Phage_rep_O PF04492.13 gi|134045541|ref|YP_001097027.1| - 0.038 14.6 0.1 0.12 13.0 0.1 1.8 1 0 0 1 1 1 0 Bacteriophage replication protein O PEPCK_ATP PF01293.20 gi|134045542|ref|YP_001097028.1| - 1.7e-06 27.0 0.1 4.2e-06 25.7 0.1 1.8 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxykinase Hpr_kinase_C PF07475.12 gi|134045542|ref|YP_001097028.1| - 0.024 14.2 0.0 0.087 12.3 0.0 1.9 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain Polysacc_synt_2 PF02719.15 gi|134045544|ref|YP_001097030.1| - 9.4e-111 369.6 0.1 1.1e-110 369.4 0.1 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|134045544|ref|YP_001097030.1| - 2.1e-23 82.7 0.1 3.5e-23 82.0 0.1 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 gi|134045544|ref|YP_001097030.1| - 1.1e-21 77.5 0.0 6.1e-21 75.0 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|134045544|ref|YP_001097030.1| - 1e-18 67.9 0.0 2e-18 66.9 0.0 1.5 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|134045544|ref|YP_001097030.1| - 6.3e-12 45.2 0.0 1.6e-10 40.6 0.0 2.1 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|134045544|ref|YP_001097030.1| - 1.1e-11 44.9 0.0 1.7e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|134045544|ref|YP_001097030.1| - 9.2e-11 41.4 1.2 5e-09 35.7 1.1 2.3 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|134045544|ref|YP_001097030.1| - 1.3e-06 28.0 0.0 2.4e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|134045544|ref|YP_001097030.1| - 1.5e-06 28.0 0.0 2.1e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Ldh_1_N PF00056.23 gi|134045544|ref|YP_001097030.1| - 0.00045 20.3 0.2 0.00092 19.3 0.2 1.5 1 1 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain KR PF08659.10 gi|134045544|ref|YP_001097030.1| - 0.00048 20.1 0.1 0.0014 18.6 0.1 1.7 1 1 0 1 1 1 1 KR domain T2SSE PF00437.20 gi|134045544|ref|YP_001097030.1| - 0.0038 16.3 0.4 0.021 13.9 0.2 2.4 2 2 1 3 3 3 1 Type II/IV secretion system protein Shikimate_DH PF01488.20 gi|134045544|ref|YP_001097030.1| - 0.005 16.9 0.1 0.01 15.9 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|134045544|ref|YP_001097030.1| - 0.01 16.1 0.1 0.032 14.5 0.1 1.9 1 1 0 1 1 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|134045544|ref|YP_001097030.1| - 0.057 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|134045544|ref|YP_001097030.1| - 0.083 13.5 0.0 0.33 11.5 0.0 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DegT_DnrJ_EryC1 PF01041.17 gi|134045545|ref|YP_001097031.1| - 4e-109 365.2 0.0 4.5e-109 365.1 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|134045545|ref|YP_001097031.1| - 5.9e-08 32.3 0.0 5.4e-07 29.1 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|134045545|ref|YP_001097031.1| - 5.2e-06 25.9 0.0 1.3e-05 24.6 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|134045545|ref|YP_001097031.1| - 2.2e-05 23.6 0.0 0.00065 18.8 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|134045545|ref|YP_001097031.1| - 0.0053 15.3 0.0 0.0087 14.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Acetyltransf_6 PF13480.7 gi|134045546|ref|YP_001097032.1| - 0.00026 21.2 0.0 0.00046 20.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|134045546|ref|YP_001097032.1| - 0.00049 19.1 1.0 0.0064 15.4 0.1 2.1 1 1 1 2 2 2 1 FemAB family FemAB_like PF04339.12 gi|134045546|ref|YP_001097032.1| - 0.003 16.7 0.3 0.004 16.3 0.3 1.2 1 0 0 1 1 1 1 Peptidogalycan biosysnthesis/recognition KNOX2 PF03791.13 gi|134045546|ref|YP_001097032.1| - 0.057 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 KNOX2 domain Epimerase_2 PF02350.19 gi|134045547|ref|YP_001097033.1| - 1e-76 258.1 0.0 1.2e-76 257.8 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyphos_transf PF04464.14 gi|134045547|ref|YP_001097033.1| - 0.0053 15.8 0.0 0.0095 14.9 0.0 1.4 1 0 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NeuB PF03102.14 gi|134045549|ref|YP_001097035.1| - 1.1e-100 336.1 0.1 1.3e-100 335.8 0.1 1.1 1 0 0 1 1 1 1 NeuB family SAF PF08666.12 gi|134045549|ref|YP_001097035.1| - 4.3e-11 43.3 0.3 8.6e-11 42.3 0.3 1.6 1 0 0 1 1 1 1 SAF domain HMGL-like PF00682.19 gi|134045549|ref|YP_001097035.1| - 0.11 12.1 0.4 16 5.0 0.0 3.0 3 0 0 3 3 3 0 HMGL-like NTS PF15447.6 gi|134045549|ref|YP_001097035.1| - 0.12 12.9 1.0 0.3 11.6 1.0 1.7 1 0 0 1 1 1 0 N-terminal segments of PfEMP1 CTP_transf_3 PF02348.19 gi|134045550|ref|YP_001097036.1| - 3.6e-26 92.4 0.0 4.8e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|134045550|ref|YP_001097036.1| - 3.8e-05 23.5 0.0 0.00025 20.9 0.0 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.7 gi|134045550|ref|YP_001097036.1| - 0.27 11.6 0.0 0.34 11.3 0.0 1.2 1 0 0 1 1 1 0 MobA-like NTP transferase domain Polysacc_synt PF01943.17 gi|134045551|ref|YP_001097037.1| - 5.9e-47 160.3 30.0 5.9e-47 160.3 30.0 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|134045551|ref|YP_001097037.1| - 1.7e-23 83.3 25.6 1.7e-23 83.3 25.6 4.1 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|134045551|ref|YP_001097037.1| - 7.6e-08 31.9 21.1 7.6e-08 31.9 21.1 3.2 3 1 0 3 3 3 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|134045551|ref|YP_001097037.1| - 2.5e-07 30.5 26.0 6.3e-06 25.9 9.8 4.3 3 2 1 4 4 4 2 MatE MurJ PF03023.14 gi|134045551|ref|YP_001097037.1| - 1.9e-06 26.8 45.3 2.8e-06 26.2 45.3 1.2 1 0 0 1 1 1 1 Lipid II flippase MurJ Glycos_transf_1 PF00534.20 gi|134045552|ref|YP_001097038.1| - 2.6e-31 108.5 0.1 4.5e-31 107.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|134045552|ref|YP_001097038.1| - 1.4e-21 77.3 0.0 2.2e-21 76.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|134045552|ref|YP_001097038.1| - 1.8e-16 60.6 0.0 8.9e-16 58.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|134045552|ref|YP_001097038.1| - 1.3e-07 31.8 0.1 2.6e-07 30.8 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|134045552|ref|YP_001097038.1| - 3.5e-05 24.1 0.0 7.7e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|134045552|ref|YP_001097038.1| - 0.014 15.9 0.0 0.022 15.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain CbiK PF06180.11 gi|134045552|ref|YP_001097038.1| - 0.07 12.4 1.0 3.7 6.8 0.2 2.1 1 1 1 2 2 2 0 Cobalt chelatase (CbiK) Ribosomal_S13 PF00416.22 gi|134045554|ref|YP_001097040.1| - 0.11 12.9 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S13/S18 PGM_PMM_I PF02878.16 gi|134045555|ref|YP_001097041.1| - 2.5e-36 124.4 0.0 8.1e-36 122.8 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|134045555|ref|YP_001097041.1| - 9.7e-25 87.0 0.0 1.7e-24 86.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|134045555|ref|YP_001097041.1| - 1.5e-20 73.7 0.1 6.5e-20 71.7 0.0 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|134045555|ref|YP_001097041.1| - 8e-12 45.2 0.0 2.4e-11 43.7 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain NTP_transferase PF00483.23 gi|134045556|ref|YP_001097042.1| - 9.2e-42 143.3 0.0 1.3e-41 142.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|134045556|ref|YP_001097042.1| - 1.2e-18 66.0 22.0 1.9e-06 27.4 1.2 4.6 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|134045556|ref|YP_001097042.1| - 8.4e-13 49.0 0.0 1.2e-12 48.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|134045556|ref|YP_001097042.1| - 0.00029 20.5 26.3 0.0038 16.9 0.2 5.3 5 1 0 6 6 6 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|134045556|ref|YP_001097042.1| - 0.00031 20.6 0.0 0.00081 19.2 0.0 1.6 1 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Bactofilin PF04519.13 gi|134045556|ref|YP_001097042.1| - 0.011 16.0 2.4 0.041 14.2 2.4 1.9 1 1 0 1 1 1 0 Polymer-forming cytoskeletal CTP_transf_3 PF02348.19 gi|134045556|ref|YP_001097042.1| - 0.13 12.2 0.2 0.36 10.7 0.2 1.7 1 1 0 1 1 1 0 Cytidylyltransferase Fucokinase PF07959.12 gi|134045556|ref|YP_001097042.1| - 0.26 10.2 4.1 16 4.3 1.2 3.3 2 1 2 4 4 4 0 L-fucokinase DUF4954 PF16314.5 gi|134045556|ref|YP_001097042.1| - 0.9 7.6 8.8 0.34 9.0 5.8 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4954) dUTPase PF00692.19 gi|134045557|ref|YP_001097043.1| - 6.9e-07 29.0 0.0 1e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|134045557|ref|YP_001097043.1| - 8.6e-05 21.5 0.0 0.0001 21.2 0.0 1.1 1 0 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF4040 PF13244.6 gi|134045558|ref|YP_001097044.1| - 1.2e-15 57.4 3.2 1.4e-15 57.1 3.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) YwiC PF14256.6 gi|134045559|ref|YP_001097045.1| - 0.013 15.8 1.6 0.016 15.5 1.6 1.1 1 0 0 1 1 1 0 YwiC-like protein PhaG_MnhG_YufB PF03334.14 gi|134045559|ref|YP_001097045.1| - 0.013 15.7 5.1 0.11 12.7 5.1 2.2 1 1 0 1 1 1 0 Na+/H+ antiporter subunit DUF2109 PF09882.9 gi|134045559|ref|YP_001097045.1| - 0.1 12.6 4.7 0.67 10.0 4.7 1.9 1 1 0 1 1 1 0 Predicted membrane protein (DUF2109) Aminotran_1_2 PF00155.21 gi|134045560|ref|YP_001097046.1| - 7e-70 236.0 0.0 8.4e-70 235.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|134045560|ref|YP_001097046.1| - 1.2e-09 37.9 0.0 1.8e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|134045560|ref|YP_001097046.1| - 4.2e-09 35.4 0.0 6.3e-09 34.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|134045560|ref|YP_001097046.1| - 5e-07 29.0 0.0 1e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|134045560|ref|YP_001097046.1| - 3.3e-05 23.3 0.0 6.3e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Glyco_hydro_20 PF00728.22 gi|134045560|ref|YP_001097046.1| - 0.15 11.4 0.0 11 5.3 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 20, catalytic domain RNA_binding PF01877.17 gi|134045561|ref|YP_001097047.1| - 1.2e-12 48.1 2.7 4.2e-11 43.2 2.6 2.2 1 1 0 1 1 1 1 RNA binding MMU163 PF17119.5 gi|134045561|ref|YP_001097047.1| - 0.082 12.1 0.1 0.095 11.8 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial protein up-regulated during meiosis DUF977 PF06163.11 gi|134045562|ref|YP_001097048.1| - 0.016 15.2 0.0 2.6 8.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) HTH_24 PF13412.6 gi|134045562|ref|YP_001097048.1| - 0.019 14.5 0.5 0.061 12.9 0.2 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding RPA_C PF08784.11 gi|134045562|ref|YP_001097048.1| - 0.025 15.2 0.0 0.04 14.6 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal MSP PF01716.18 gi|134045562|ref|YP_001097048.1| - 0.048 12.9 0.0 0.065 12.4 0.0 1.3 1 0 0 1 1 1 0 Manganese-stabilising protein / photosystem II polypeptide TFIIE_alpha PF02002.17 gi|134045562|ref|YP_001097048.1| - 0.054 13.4 1.4 0.054 13.4 1.4 2.2 1 1 2 3 3 3 0 TFIIE alpha subunit Peptidase_S49 PF01343.18 gi|134045563|ref|YP_001097049.1| - 8.4e-47 159.0 2.1 1.3e-46 158.4 2.1 1.3 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.16 gi|134045563|ref|YP_001097049.1| - 0.017 14.1 0.0 0.029 13.4 0.0 1.3 1 0 0 1 1 1 0 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|134045563|ref|YP_001097049.1| - 0.028 14.3 0.2 0.11 12.4 0.1 1.9 2 0 0 2 2 2 0 Clp protease Succ_CoA_lig PF13607.6 gi|134045563|ref|YP_001097049.1| - 0.038 13.8 0.0 0.069 12.9 0.0 1.4 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain Na_Ca_ex PF01699.24 gi|134045564|ref|YP_001097050.1| - 2.7e-51 173.5 43.6 6.2e-27 94.4 20.6 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Flg_bb_rod PF00460.20 gi|134045564|ref|YP_001097050.1| - 0.042 13.8 0.5 0.094 12.7 0.5 1.6 1 0 0 1 1 1 0 Flagella basal body rod protein CCG PF02754.16 gi|134045565|ref|YP_001097051.1| - 8.7e-42 141.2 6.0 4.4e-21 74.9 0.0 3.2 3 0 0 3 3 3 2 Cysteine-rich domain Fer2_3 PF13085.6 gi|134045565|ref|YP_001097051.1| - 1e-22 80.2 0.2 5e-22 78.0 0.1 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|134045565|ref|YP_001097051.1| - 2.7e-11 43.7 4.4 2.7e-11 43.7 4.4 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045565|ref|YP_001097051.1| - 9.7e-09 35.3 5.5 9.7e-09 35.3 5.5 3.4 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045565|ref|YP_001097051.1| - 1e-08 35.6 5.8 1e-08 35.6 5.8 3.4 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|134045565|ref|YP_001097051.1| - 1.2e-07 31.9 10.6 0.00023 21.4 0.4 3.4 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045565|ref|YP_001097051.1| - 1.4e-07 31.5 8.2 1.4e-07 31.5 8.2 3.6 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045565|ref|YP_001097051.1| - 9.3e-07 29.3 7.2 9.3e-07 29.3 7.2 3.2 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer2 PF00111.27 gi|134045565|ref|YP_001097051.1| - 6.5e-06 26.0 0.1 6.5e-06 26.0 0.1 2.6 3 0 0 3 3 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_16 PF13484.6 gi|134045565|ref|YP_001097051.1| - 2.1e-05 25.4 20.2 0.00012 22.9 8.8 3.6 4 1 2 6 6 4 3 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|134045565|ref|YP_001097051.1| - 0.00096 20.0 14.4 0.023 15.5 0.2 4.3 4 1 0 4 4 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|134045565|ref|YP_001097051.1| - 0.0028 17.4 4.1 0.0028 17.4 4.1 4.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134045565|ref|YP_001097051.1| - 0.0085 16.1 2.2 0.0085 16.1 2.2 4.6 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|134045565|ref|YP_001097051.1| - 0.011 16.6 4.6 0.011 16.6 4.6 3.9 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134045565|ref|YP_001097051.1| - 0.012 15.7 2.7 0.012 15.7 2.7 4.5 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|134045565|ref|YP_001097051.1| - 0.022 15.2 1.3 0.022 15.2 1.3 4.7 5 0 0 5 5 4 0 4Fe-4S binding domain SpoVIF PF14069.6 gi|134045565|ref|YP_001097051.1| - 0.035 13.9 0.0 0.12 12.2 0.0 1.9 1 0 0 1 1 1 0 Stage VI sporulation protein F DUF547 PF04784.14 gi|134045565|ref|YP_001097051.1| - 0.049 13.7 0.1 0.14 12.2 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function, DUF547 Fer2_4 PF13510.6 gi|134045565|ref|YP_001097051.1| - 0.093 12.8 0.0 0.27 11.3 0.0 1.8 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Desulfoferrod_N PF06397.12 gi|134045565|ref|YP_001097051.1| - 0.74 9.5 7.8 1.1 8.9 2.5 2.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain FlgM PF04316.13 gi|134045566|ref|YP_001097052.1| - 0.0092 16.3 0.5 0.017 15.5 0.5 1.3 1 0 0 1 1 1 1 Anti-sigma-28 factor, FlgM Apis_Csd PF11671.8 gi|134045567|ref|YP_001097053.1| - 0.0044 17.0 0.7 0.012 15.6 0.7 1.7 1 0 0 1 1 1 1 Complementary sex determiner protein HTH_34 PF13601.6 gi|134045568|ref|YP_001097054.1| - 0.0002 21.5 0.0 0.00025 21.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|134045568|ref|YP_001097054.1| - 0.0003 20.3 0.0 0.00041 19.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|134045568|ref|YP_001097054.1| - 0.0025 17.7 0.0 0.0049 16.8 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_45 PF14947.6 gi|134045568|ref|YP_001097054.1| - 0.0037 17.2 0.5 0.0063 16.5 0.5 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_12 PF08461.10 gi|134045568|ref|YP_001097054.1| - 0.0072 16.3 0.1 0.012 15.5 0.1 1.4 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|134045568|ref|YP_001097054.1| - 0.028 14.3 0.0 0.069 13.0 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|134045568|ref|YP_001097054.1| - 0.14 12.2 0.0 0.22 11.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MarC PF01914.17 gi|134045569|ref|YP_001097055.1| - 0.0023 17.4 0.6 0.0033 16.8 0.6 1.2 1 0 0 1 1 1 1 MarC family integral membrane protein DUF2976 PF11190.8 gi|134045569|ref|YP_001097055.1| - 0.0043 16.8 0.9 0.0043 16.8 0.9 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF2976) DUF4271 PF14093.6 gi|134045569|ref|YP_001097055.1| - 0.022 14.7 9.4 0.026 14.5 9.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) GpcrRhopsn4 PF10192.9 gi|134045569|ref|YP_001097055.1| - 0.024 14.0 7.4 0.028 13.8 7.4 1.0 1 0 0 1 1 1 0 Rhodopsin-like GPCR transmembrane domain DUF3754 PF12576.8 gi|134045569|ref|YP_001097055.1| - 0.051 13.5 3.5 0.11 12.4 3.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3754) DUF2569 PF10754.9 gi|134045569|ref|YP_001097055.1| - 0.074 13.5 5.4 0.089 13.2 5.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) ABC2_membrane_5 PF13346.6 gi|134045569|ref|YP_001097055.1| - 0.12 12.0 14.9 0.42 10.1 14.9 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein OSTMP1 PF09777.9 gi|134045569|ref|YP_001097055.1| - 4.2 6.7 7.0 3.3 7.0 0.7 2.2 1 1 1 2 2 2 0 Osteopetrosis-associated transmembrane protein 1 precursor Acetyltransf_7 PF13508.7 gi|134045570|ref|YP_001097056.1| - 2.5e-07 31.0 0.0 3.4e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|134045570|ref|YP_001097056.1| - 4.6e-07 30.1 0.0 5.2e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|134045570|ref|YP_001097056.1| - 1.1e-06 28.6 0.0 1.8e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|134045570|ref|YP_001097056.1| - 0.00018 21.4 0.0 0.00029 20.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein MoaC PF01967.21 gi|134045571|ref|YP_001097057.1| - 3.4e-49 166.4 4.6 3.8e-49 166.3 4.6 1.0 1 0 0 1 1 1 1 MoaC family eIF2_C PF09173.11 gi|134045571|ref|YP_001097057.1| - 0.39 11.0 2.7 0.66 10.3 1.0 2.1 1 1 1 2 2 2 0 Initiation factor eIF2 gamma, C terminal Rrf2 PF02082.20 gi|134045572|ref|YP_001097058.1| - 7.2e-08 32.7 0.1 2.3e-07 31.1 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator ACT_4 PF13291.6 gi|134045572|ref|YP_001097058.1| - 9.4e-05 22.9 0.6 0.00018 22.0 0.6 1.6 1 1 0 1 1 1 1 ACT domain HrcA_DNA-bdg PF03444.15 gi|134045572|ref|YP_001097058.1| - 0.00021 20.9 0.0 0.00042 19.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_5 PF01022.20 gi|134045572|ref|YP_001097058.1| - 0.00027 20.7 0.0 0.00048 19.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|134045572|ref|YP_001097058.1| - 0.002 18.1 0.0 0.0036 17.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|134045572|ref|YP_001097058.1| - 0.0026 17.7 1.7 0.047 13.7 0.2 2.3 2 1 0 2 2 2 1 Winged helix-turn-helix TrmB PF01978.19 gi|134045572|ref|YP_001097058.1| - 0.0048 16.7 0.0 0.0085 16.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB ACT_6 PF13740.6 gi|134045572|ref|YP_001097058.1| - 0.0061 16.5 0.1 0.017 15.1 0.0 1.8 2 0 0 2 2 2 1 ACT domain Replic_Relax PF13814.6 gi|134045572|ref|YP_001097058.1| - 0.011 15.8 0.0 0.012 15.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation MarR_2 PF12802.7 gi|134045572|ref|YP_001097058.1| - 0.031 14.2 0.0 0.12 12.3 0.0 1.8 2 0 0 2 2 2 0 MarR family ACT PF01842.25 gi|134045572|ref|YP_001097058.1| - 0.032 14.0 0.5 0.14 11.9 0.2 2.1 1 1 1 2 2 2 0 ACT domain RQC PF09382.10 gi|134045572|ref|YP_001097058.1| - 0.055 13.3 0.0 0.079 12.7 0.0 1.3 1 0 0 1 1 1 0 RQC domain HTH_29 PF13551.6 gi|134045572|ref|YP_001097058.1| - 0.064 13.3 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix CYTH PF01928.21 gi|134045573|ref|YP_001097059.1| - 4.3e-33 114.7 5.3 4.8e-33 114.6 5.3 1.0 1 0 0 1 1 1 1 CYTH domain PurS PF02700.14 gi|134045573|ref|YP_001097059.1| - 0.051 13.7 0.7 1 9.5 0.0 3.2 4 0 0 4 4 4 0 Phosphoribosylformylglycinamidine (FGAM) synthase HMA PF00403.26 gi|134045573|ref|YP_001097059.1| - 0.062 13.7 1.0 13 6.3 0.1 2.6 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF4250 PF14056.6 gi|134045573|ref|YP_001097059.1| - 0.069 13.1 1.2 1 9.4 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) YusW PF14039.6 gi|134045573|ref|YP_001097059.1| - 0.28 11.7 5.3 0.31 11.6 0.4 2.7 2 1 0 2 2 2 0 YusW-like protein DUF2481 PF10654.9 gi|134045573|ref|YP_001097059.1| - 0.37 10.8 4.7 0.12 12.3 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2481) HMGL-like PF00682.19 gi|134045574|ref|YP_001097060.1| - 1.1e-91 307.1 2.0 2.5e-91 305.9 2.0 1.6 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|134045574|ref|YP_001097060.1| - 2.6e-31 108.3 5.1 6e-31 107.1 5.1 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.24 gi|134045574|ref|YP_001097060.1| - 0.034 13.6 0.0 0.15 11.5 0.0 2.1 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Hydrolase_6 PF13344.6 gi|134045574|ref|YP_001097060.1| - 0.1 12.7 0.0 1 9.5 0.0 2.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Lon_C PF05362.13 gi|134045575|ref|YP_001097061.1| - 2.9e-10 40.0 0.0 5.1e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain UPF0029 PF01205.19 gi|134045576|ref|YP_001097062.1| - 6.5e-29 100.4 0.0 9.9e-29 99.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|134045576|ref|YP_001097062.1| - 3.5e-10 39.6 0.0 6.7e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) tRNA-synt_1e PF01406.19 gi|134045577|ref|YP_001097063.1| - 2.8e-136 453.8 0.3 4.3e-136 453.2 0.3 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|134045577|ref|YP_001097063.1| - 8e-18 64.4 5.5 5.2e-09 35.3 0.1 2.4 3 0 0 3 3 3 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|134045577|ref|YP_001097063.1| - 4.7e-11 43.0 0.1 1.2e-10 41.7 0.1 1.7 1 0 0 1 1 1 1 DALR domain tRNA-synt_1f PF01921.18 gi|134045577|ref|YP_001097063.1| - 1.7e-08 33.8 0.1 5.6e-06 25.5 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|134045577|ref|YP_001097063.1| - 1.9e-07 29.7 0.3 2.8e-06 25.9 0.0 2.4 3 0 0 3 3 3 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.21 gi|134045577|ref|YP_001097063.1| - 0.002 17.1 0.1 0.0062 15.5 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain PRD PF00874.20 gi|134045577|ref|YP_001097063.1| - 5.6 7.3 8.8 0.31 11.4 0.6 3.1 3 1 0 3 3 3 0 PRD domain Pyr_redox_2 PF07992.14 gi|134045578|ref|YP_001097064.1| - 1.4e-17 63.9 0.1 1e-05 24.9 0.0 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|134045578|ref|YP_001097064.1| - 4.5e-10 39.6 0.0 4.4e-05 23.2 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|134045578|ref|YP_001097064.1| - 8.4e-10 37.9 0.0 2.4e-06 26.5 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|134045578|ref|YP_001097064.1| - 2.6e-08 33.4 0.5 0.0074 15.4 0.0 2.8 3 0 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|134045578|ref|YP_001097064.1| - 1.3e-06 28.5 0.0 9.5e-06 25.8 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|134045578|ref|YP_001097064.1| - 2.6e-06 26.8 0.1 5.6e-06 25.8 0.0 1.6 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|134045578|ref|YP_001097064.1| - 2.9e-06 26.8 0.1 8.5e-05 21.9 0.0 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|134045578|ref|YP_001097064.1| - 5.4e-06 25.8 0.0 9.6e-06 24.9 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|134045578|ref|YP_001097064.1| - 1.8e-05 25.2 0.1 0.29 11.7 0.0 2.8 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|134045578|ref|YP_001097064.1| - 7.1e-05 22.2 0.0 0.00023 20.5 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|134045578|ref|YP_001097064.1| - 0.0012 18.0 0.0 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|134045578|ref|YP_001097064.1| - 0.1 11.9 0.0 0.21 10.9 0.0 1.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase DUF1722 PF08349.11 gi|134045579|ref|YP_001097065.1| - 5.3e-36 123.5 0.3 1.1e-35 122.5 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) DUF523 PF04463.12 gi|134045579|ref|YP_001097065.1| - 9.3e-31 106.7 0.1 1.4e-30 106.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) ER PF01133.17 gi|134045579|ref|YP_001097065.1| - 0.12 12.4 1.6 1.4 9.0 0.1 2.8 2 1 1 3 3 3 0 Enhancer of rudimentary WSN PF02206.18 gi|134045579|ref|YP_001097065.1| - 0.45 10.5 2.1 1.6 8.7 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function YcaO PF02624.16 gi|134045580|ref|YP_001097066.1| - 4.6e-77 259.5 0.0 5.9e-77 259.1 0.0 1.1 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding DUF167 PF02594.16 gi|134045581|ref|YP_001097067.1| - 1.6e-20 73.0 0.6 2.3e-20 72.5 0.6 1.3 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Z1 PF10593.9 gi|134045581|ref|YP_001097067.1| - 0.0063 16.0 0.7 0.0064 16.0 0.7 1.0 1 0 0 1 1 1 1 Z1 domain ISG65-75 PF11727.8 gi|134045581|ref|YP_001097067.1| - 0.038 13.2 1.3 0.039 13.2 1.3 1.1 1 0 0 1 1 1 0 Invariant surface glycoprotein Fer4_8 PF13183.6 gi|134045582|ref|YP_001097068.1| - 4.4e-10 39.9 6.6 8e-10 39.0 6.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045582|ref|YP_001097068.1| - 1.8e-09 38.0 6.8 3.7e-09 37.0 6.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045582|ref|YP_001097068.1| - 2.7e-09 37.0 7.0 5.1e-09 36.1 7.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045582|ref|YP_001097068.1| - 3.5e-09 36.7 7.8 9.2e-09 35.3 8.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045582|ref|YP_001097068.1| - 9.2e-06 26.2 10.0 2.6e-05 24.7 10.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045582|ref|YP_001097068.1| - 3.4e-05 24.7 4.1 0.12 13.4 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|134045582|ref|YP_001097068.1| - 0.00076 19.2 12.0 0.034 14.0 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134045582|ref|YP_001097068.1| - 0.0024 18.0 6.8 0.0058 16.7 6.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134045582|ref|YP_001097068.1| - 0.0034 17.4 12.1 0.11 12.7 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|134045582|ref|YP_001097068.1| - 0.027 15.0 14.0 0.085 13.4 3.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|134045582|ref|YP_001097068.1| - 0.23 12.5 16.6 0.56 11.3 3.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|134045582|ref|YP_001097068.1| - 0.57 10.0 9.1 0.14 11.9 1.2 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.7 gi|134045582|ref|YP_001097068.1| - 0.82 9.9 11.3 4.3 7.6 2.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|134045582|ref|YP_001097068.1| - 1.7 8.8 8.5 5.6 7.2 1.1 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain CCG PF02754.16 gi|134045583|ref|YP_001097069.1| - 6.3e-38 128.9 4.5 2.5e-18 66.0 0.3 2.5 3 0 0 3 3 3 2 Cysteine-rich domain LDcluster4 PF18306.1 gi|134045583|ref|YP_001097069.1| - 0.094 12.3 0.5 0.24 11.0 0.0 1.8 2 0 0 2 2 2 0 SLOG cluster4 family HTH_24 PF13412.6 gi|134045584|ref|YP_001097070.1| - 7e-13 47.9 0.3 1.4e-12 46.9 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|134045584|ref|YP_001097070.1| - 5.1e-05 23.2 0.1 9.8e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|134045584|ref|YP_001097070.1| - 0.0019 18.1 0.1 0.0038 17.1 0.1 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|134045584|ref|YP_001097070.1| - 0.0025 17.7 0.0 0.0049 16.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|134045584|ref|YP_001097070.1| - 0.0055 16.7 0.1 0.016 15.2 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4423 PF14394.6 gi|134045584|ref|YP_001097070.1| - 0.015 15.0 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_10 PF04967.12 gi|134045584|ref|YP_001097070.1| - 0.022 14.5 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain GerE PF00196.19 gi|134045584|ref|YP_001097070.1| - 0.023 14.3 0.1 0.067 12.7 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family MarR PF01047.22 gi|134045584|ref|YP_001097070.1| - 0.023 14.6 0.1 0.051 13.5 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_3 PF01381.22 gi|134045584|ref|YP_001097070.1| - 0.032 14.3 0.1 0.075 13.1 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix HTH_27 PF13463.6 gi|134045584|ref|YP_001097070.1| - 0.039 14.5 0.0 0.069 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|134045584|ref|YP_001097070.1| - 0.13 12.3 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain SurE PF01975.17 gi|134045585|ref|YP_001097071.1| - 5e-53 179.8 0.1 6.1e-53 179.5 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE NYN PF01936.18 gi|134045586|ref|YP_001097072.1| - 8.5e-25 88.0 0.1 1.3e-24 87.4 0.1 1.2 1 0 0 1 1 1 1 NYN domain DUF4651 PF15513.6 gi|134045586|ref|YP_001097072.1| - 0.049 13.4 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4651) MrpF_PhaF PF04066.13 gi|134045587|ref|YP_001097073.1| - 0.00025 21.4 4.2 0.00025 21.4 4.2 1.6 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) K1 PF02960.14 gi|134045587|ref|YP_001097073.1| - 0.0014 18.7 0.7 0.0018 18.4 0.5 1.4 1 1 0 1 1 1 1 K1 glycoprotein DUF202 PF02656.15 gi|134045587|ref|YP_001097073.1| - 0.47 10.9 4.6 0.8 10.2 4.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF61 PF01886.16 gi|134045588|ref|YP_001097074.1| - 5.4e-35 120.2 4.5 6e-35 120.1 4.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 DUF22 PF01629.16 gi|134045589|ref|YP_001097075.1| - 2.2e-17 62.7 0.4 2.7e-17 62.4 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF22 Haemocyan_bet_s PF14830.6 gi|134045589|ref|YP_001097075.1| - 0.092 12.7 0.0 0.15 12.1 0.0 1.5 1 1 0 1 1 1 0 Haemocyanin beta-sandwich ATP-synt_D PF01813.17 gi|134045590|ref|YP_001097076.1| - 1.5e-63 214.2 9.2 1.7e-63 214.1 9.2 1.0 1 0 0 1 1 1 1 ATP synthase subunit D LepB_N PF18640.1 gi|134045590|ref|YP_001097076.1| - 0.091 12.4 1.7 0.16 11.5 0.3 1.8 1 1 1 2 2 2 0 LepB N-terminal domain Exonuc_VII_S PF02609.16 gi|134045590|ref|YP_001097076.1| - 0.25 11.4 5.4 0.63 10.1 0.4 2.9 2 0 0 2 2 2 0 Exonuclease VII small subunit TPD52 PF04201.15 gi|134045590|ref|YP_001097076.1| - 7.9 6.1 7.6 0.99 9.0 1.3 2.2 2 1 0 2 2 2 0 Tumour protein D52 family ATP-synt_ab PF00006.25 gi|134045591|ref|YP_001097077.1| - 1.1e-66 224.6 0.0 1.4e-66 224.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|134045591|ref|YP_001097077.1| - 7.5e-10 39.2 1.4 7.5e-10 39.2 1.4 2.0 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|134045591|ref|YP_001097077.1| - 0.0071 16.5 0.9 0.02 15.0 0.9 1.8 1 0 0 1 1 1 1 HAS barrel domain Ribosomal_L16 PF00252.18 gi|134045591|ref|YP_001097077.1| - 0.046 13.7 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L16p/L10e ATP-synt_ab PF00006.25 gi|134045592|ref|YP_001097078.1| - 2.2e-90 302.0 0.0 4.4e-90 301.0 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|134045592|ref|YP_001097078.1| - 3.7e-44 149.5 0.5 8.2e-44 148.4 0.5 1.6 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|134045592|ref|YP_001097078.1| - 8.3e-13 48.7 6.7 1.2e-12 48.1 5.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|134045592|ref|YP_001097078.1| - 0.04 13.9 2.9 0.069 13.1 0.4 2.3 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain AAA_22 PF13401.6 gi|134045592|ref|YP_001097078.1| - 0.098 12.9 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_F PF01990.17 gi|134045593|ref|YP_001097079.1| - 9.7e-20 70.7 0.8 1.1e-19 70.5 0.8 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit PucR PF07905.11 gi|134045593|ref|YP_001097079.1| - 0.091 13.0 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family vATP-synt_AC39 PF01992.16 gi|134045594|ref|YP_001097080.1| - 1.6e-83 281.0 1.9 1.9e-83 280.8 1.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit MerR-DNA-bind PF09278.11 gi|134045594|ref|YP_001097080.1| - 0.0035 17.8 0.4 1.5 9.4 0.3 3.3 3 0 0 3 3 3 1 MerR, DNA binding Glyco_hydro_79n PF03662.14 gi|134045594|ref|YP_001097080.1| - 0.13 11.2 0.0 0.23 10.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 79, N-terminal domain MerR_1 PF13411.6 gi|134045594|ref|YP_001097080.1| - 6.3 7.0 6.1 33 4.7 0.3 3.4 3 0 0 3 3 3 0 MerR HTH family regulatory protein vATP-synt_E PF01991.18 gi|134045595|ref|YP_001097081.1| - 1.2e-34 119.5 20.3 1.3e-34 119.3 20.3 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF3552 PF12072.8 gi|134045595|ref|YP_001097081.1| - 0.0015 18.0 21.4 0.015 14.7 18.3 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3552) HrpE PF06188.12 gi|134045595|ref|YP_001097081.1| - 0.33 10.8 8.0 0.75 9.6 2.1 2.1 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF87 PF01935.17 gi|134045595|ref|YP_001097081.1| - 0.86 9.6 6.6 1.8 8.6 6.6 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain Activator-TraM PF11657.8 gi|134045595|ref|YP_001097081.1| - 1.4 8.7 13.4 1.3 8.9 9.0 2.3 1 1 1 2 2 2 0 Transcriptional activator TraM V-ATPase_G_2 PF16999.5 gi|134045595|ref|YP_001097081.1| - 6.1 7.3 20.7 3.4 8.1 17.1 2.3 2 2 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit ATP-synt_C PF00137.21 gi|134045596|ref|YP_001097082.1| - 8.1e-48 160.6 50.5 3.2e-17 62.6 11.3 3.2 3 0 0 3 3 3 3 ATP synthase subunit C V_ATPase_I PF01496.19 gi|134045597|ref|YP_001097083.1| - 3e-30 104.9 4.2 2.2e-16 59.0 0.0 2.8 3 0 0 3 3 3 2 V-type ATPase 116kDa subunit family EFG_C PF00679.24 gi|134045597|ref|YP_001097083.1| - 0.011 15.7 0.0 0.75 9.9 0.0 2.8 2 1 0 2 2 2 0 Elongation factor G C-terminus Holin_BhlA PF10960.8 gi|134045597|ref|YP_001097083.1| - 0.4 10.7 1.8 24 5.0 0.1 2.9 2 0 0 2 2 2 0 BhlA holin family UPF0552 PF10574.9 gi|134045598|ref|YP_001097084.1| - 0.009 15.4 0.9 0.009 15.4 0.9 1.2 1 0 0 1 1 1 1 Arp2/3-interacting proteins Arpin V-ATPase_G_2 PF16999.5 gi|134045598|ref|YP_001097084.1| - 0.019 15.4 17.0 0.022 15.2 17.0 1.2 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit vATP-synt_E PF01991.18 gi|134045598|ref|YP_001097084.1| - 0.11 11.9 17.0 0.16 11.4 17.0 1.2 1 0 0 1 1 1 0 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.18 gi|134045598|ref|YP_001097084.1| - 0.14 12.2 19.6 0.18 11.9 19.6 1.2 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) HATPase_c_5 PF14501.6 gi|134045598|ref|YP_001097084.1| - 0.17 11.8 3.8 0.18 11.8 3.2 1.3 1 1 0 1 1 1 0 GHKL domain DUF3552 PF12072.8 gi|134045598|ref|YP_001097084.1| - 0.78 9.1 21.9 7 6.0 21.8 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) tRNA_bind_2 PF13725.6 gi|134045598|ref|YP_001097084.1| - 2.7 7.6 9.5 3.1 7.4 9.5 1.1 1 0 0 1 1 1 0 Possible tRNA binding domain YtxH PF12732.7 gi|134045598|ref|YP_001097084.1| - 6.8 7.3 11.8 25 5.5 11.5 1.9 1 1 0 1 1 1 0 YtxH-like protein DivIVA PF05103.13 gi|134045598|ref|YP_001097084.1| - 8.7 6.4 18.5 23 5.1 18.5 1.7 1 1 0 1 1 1 0 DivIVA protein SPOUT_MTase PF02590.17 gi|134045599|ref|YP_001097085.1| - 2.2e-59 199.8 0.5 2.5e-59 199.7 0.5 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase Flo11 PF10182.9 gi|134045599|ref|YP_001097085.1| - 0.018 15.2 0.0 0.032 14.4 0.0 1.4 1 0 0 1 1 1 0 Flo11 domain Spore_Cse60 PF10957.8 gi|134045599|ref|YP_001097085.1| - 0.2 11.7 1.6 9 6.4 0.0 2.4 2 0 0 2 2 2 0 Sporulation protein Cse60 Band_7 PF01145.25 gi|134045600|ref|YP_001097086.1| - 2.1e-36 125.6 2.7 3.2e-36 125.0 2.7 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family NfeD PF01957.18 gi|134045601|ref|YP_001097087.1| - 5.4e-17 61.9 0.1 9.8e-17 61.1 0.1 1.4 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Thymidylate_kin PF02223.17 gi|134045602|ref|YP_001097088.1| - 4.5e-45 153.6 0.7 5.4e-45 153.4 0.7 1.1 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|134045602|ref|YP_001097088.1| - 2.8e-10 40.4 2.0 2.7e-09 37.2 2.0 1.9 1 1 0 1 1 1 1 Deoxynucleoside kinase SKI PF01202.22 gi|134045602|ref|YP_001097088.1| - 1.8e-07 31.4 0.3 0.0048 17.0 0.0 2.2 2 0 0 2 2 2 2 Shikimate kinase AAA_18 PF13238.6 gi|134045602|ref|YP_001097088.1| - 2.5e-07 31.3 0.2 6.1e-07 30.0 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|134045602|ref|YP_001097088.1| - 5.9e-05 23.5 0.4 0.00029 21.3 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|134045602|ref|YP_001097088.1| - 0.00054 20.4 1.0 0.0019 18.6 1.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|134045602|ref|YP_001097088.1| - 0.0013 19.0 0.0 0.002 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|134045602|ref|YP_001097088.1| - 0.0085 15.9 0.0 2.5 7.8 0.0 2.3 2 0 0 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|134045602|ref|YP_001097088.1| - 0.014 15.6 0.1 0.12 12.5 0.1 2.2 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|134045602|ref|YP_001097088.1| - 0.02 15.2 0.1 0.073 13.5 0.0 2.0 1 1 0 2 2 2 0 RNA helicase RuvB_N PF05496.12 gi|134045602|ref|YP_001097088.1| - 0.054 13.2 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain ABC_tran PF00005.27 gi|134045602|ref|YP_001097088.1| - 0.061 13.8 0.0 0.1 13.1 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_22 PF13401.6 gi|134045602|ref|YP_001097088.1| - 0.064 13.5 0.1 0.14 12.4 0.1 1.8 1 1 1 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|134045602|ref|YP_001097088.1| - 0.16 12.0 2.9 0.22 11.5 0.2 2.3 1 1 1 2 2 2 0 AAA domain HEAT PF02985.22 gi|134045603|ref|YP_001097089.1| - 4.3e-13 48.3 0.1 2.1 8.8 0.0 10.0 10 0 0 10 10 10 2 HEAT repeat HEAT_2 PF13646.6 gi|134045603|ref|YP_001097089.1| - 9.3e-13 48.4 0.0 0.00043 20.6 0.0 8.3 7 2 3 10 10 10 2 HEAT repeats HEAT_EZ PF13513.6 gi|134045603|ref|YP_001097089.1| - 1.1e-06 29.0 0.0 0.082 13.4 0.0 5.7 5 1 1 6 6 6 1 HEAT-like repeat Cnd1 PF12717.7 gi|134045603|ref|YP_001097089.1| - 2e-06 27.9 17.3 0.074 13.1 0.0 7.3 5 3 2 7 7 7 3 non-SMC mitotic condensation complex subunit 1 TFCD_C PF12612.8 gi|134045603|ref|YP_001097089.1| - 0.018 14.9 0.0 0.17 11.7 0.0 2.7 3 0 0 3 3 3 0 Tubulin folding cofactor D C terminal DUF5578 PF17741.1 gi|134045603|ref|YP_001097089.1| - 0.026 14.0 0.2 2.5 7.5 0.0 3.7 4 1 1 5 5 5 0 Family of unknown function (DUF5578) Arm PF00514.23 gi|134045603|ref|YP_001097089.1| - 0.11 12.5 0.7 37 4.5 0.1 3.8 3 0 0 3 3 3 0 Armadillo/beta-catenin-like repeat Desulfoferrodox PF01880.18 gi|134045603|ref|YP_001097089.1| - 0.14 12.7 0.0 0.34 11.5 0.0 1.6 1 0 0 1 1 1 0 Desulfoferrodoxin tRNA_anti-codon PF01336.25 gi|134045604|ref|YP_001097090.1| - 2.4e-45 152.4 9.4 8.1e-12 45.0 0.2 6.2 5 1 1 6 6 6 5 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|134045604|ref|YP_001097090.1| - 3.4e-17 62.9 4.7 5.5e-05 23.0 0.0 5.1 5 0 0 5 5 5 4 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|134045604|ref|YP_001097090.1| - 9.8e-16 57.5 4.9 9.2e-05 22.3 0.0 5.1 4 1 0 5 5 5 3 Replication protein A OB domain Rep_fac-A_C PF08646.10 gi|134045604|ref|YP_001097090.1| - 9.7e-09 35.1 0.3 0.00011 22.0 0.1 3.3 3 0 0 3 3 3 2 Replication factor-A C terminal domain DUF3127 PF11325.8 gi|134045604|ref|YP_001097090.1| - 3e-07 30.6 2.0 0.00012 22.3 0.2 4.2 5 0 0 5 5 5 1 Domain of unknown function (DUF3127) FYVE PF01363.21 gi|134045604|ref|YP_001097090.1| - 0.012 15.8 0.1 0.02 15.0 0.1 1.4 1 0 0 1 1 1 0 FYVE zinc finger TF_Zn_Ribbon PF08271.12 gi|134045604|ref|YP_001097090.1| - 0.013 15.0 2.8 0.045 13.3 2.8 1.9 1 0 0 1 1 1 0 TFIIB zinc-binding DUF5088 PF17008.5 gi|134045604|ref|YP_001097090.1| - 0.021 14.6 0.7 0.92 9.2 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF5088) DZR PF12773.7 gi|134045604|ref|YP_001097090.1| - 0.046 13.8 0.4 0.084 12.9 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon NinF PF05810.12 gi|134045604|ref|YP_001097090.1| - 0.048 13.5 0.3 0.13 12.2 0.2 1.7 2 0 0 2 2 2 0 NinF protein T6SS_Vgr PF13296.6 gi|134045604|ref|YP_001097090.1| - 0.1 12.8 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 Putative type VI secretion system Rhs element Vgr zinc-ribbons_6 PF07191.12 gi|134045604|ref|YP_001097090.1| - 0.14 12.2 0.3 0.24 11.4 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_2 PF13240.6 gi|134045604|ref|YP_001097090.1| - 0.33 10.7 1.0 0.7 9.7 1.0 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF3006 PF11213.8 gi|134045604|ref|YP_001097090.1| - 1.8 8.8 7.9 20 5.5 0.0 4.6 6 0 0 6 6 4 0 Protein of unknown function (DUF3006) AAA_17 PF13207.6 gi|134045605|ref|YP_001097091.1| - 2e-35 122.2 0.1 2.5e-35 121.8 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|134045605|ref|YP_001097091.1| - 2e-09 38.1 0.0 3.6e-09 37.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|134045605|ref|YP_001097091.1| - 0.0012 18.8 0.5 0.0027 17.6 0.5 1.6 1 0 0 1 1 1 1 NTPase 6PF2K PF01591.18 gi|134045605|ref|YP_001097091.1| - 0.0026 17.1 0.0 0.0037 16.6 0.0 1.2 1 0 0 1 1 1 1 6-phosphofructo-2-kinase ATP_bind_1 PF03029.17 gi|134045605|ref|YP_001097091.1| - 0.0037 17.1 0.6 0.0074 16.1 0.2 1.6 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|134045605|ref|YP_001097091.1| - 0.023 13.7 0.0 0.04 12.9 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|134045605|ref|YP_001097091.1| - 0.029 14.1 0.1 0.038 13.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|134045605|ref|YP_001097091.1| - 0.034 13.6 0.1 0.058 12.8 0.1 1.4 1 1 0 1 1 1 0 Chromatin associated protein KTI12 AAA_19 PF13245.6 gi|134045605|ref|YP_001097091.1| - 0.035 14.4 1.4 0.043 14.2 1.4 1.6 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|134045605|ref|YP_001097091.1| - 0.052 13.1 0.0 0.075 12.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|134045605|ref|YP_001097091.1| - 0.062 13.5 0.1 0.15 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF3918 PF13056.6 gi|134045605|ref|YP_001097091.1| - 0.069 12.8 0.1 0.19 11.4 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3918) Torsin PF06309.11 gi|134045605|ref|YP_001097091.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Torsin AAA_16 PF13191.6 gi|134045605|ref|YP_001097091.1| - 0.11 12.9 0.0 0.16 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|134045605|ref|YP_001097091.1| - 0.12 12.6 0.1 0.29 11.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain EMC3_TMCO1 PF01956.16 gi|134045606|ref|YP_001097092.1| - 7.3e-26 90.9 11.8 9.1e-26 90.6 11.8 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|134045606|ref|YP_001097092.1| - 0.0033 17.4 11.6 0.0094 15.9 11.6 1.9 1 1 0 1 1 1 1 60Kd inner membrane protein DUF1003 PF06210.11 gi|134045606|ref|YP_001097092.1| - 0.0063 16.6 3.9 0.0063 16.6 3.9 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1003) V-ATPase_C PF03223.15 gi|134045606|ref|YP_001097092.1| - 0.011 15.1 0.1 0.015 14.7 0.1 1.1 1 0 0 1 1 1 0 V-ATPase subunit C DUF2208 PF09973.9 gi|134045606|ref|YP_001097092.1| - 0.076 12.6 8.7 0.15 11.7 8.7 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) DUF4199 PF13858.6 gi|134045606|ref|YP_001097092.1| - 0.3 11.5 14.0 0.023 15.1 8.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) T2SSF PF00482.23 gi|134045606|ref|YP_001097092.1| - 3 7.8 7.4 1.9 8.5 0.5 2.2 1 1 0 2 2 2 0 Type II secretion system (T2SS), protein F SBP_bac_3 PF00497.20 gi|134045607|ref|YP_001097093.1| - 4e-44 150.7 0.2 4.5e-44 150.5 0.2 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|134045607|ref|YP_001097093.1| - 2.5e-05 24.4 0.1 0.00034 20.8 0.1 2.6 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site ABC2_membrane_3 PF12698.7 gi|134045607|ref|YP_001097093.1| - 0.00027 20.1 8.9 0.0015 17.7 8.9 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein Ribosomal_L50 PF10501.9 gi|134045608|ref|YP_001097094.1| - 0.059 13.5 0.5 0.31 11.2 0.5 1.8 1 1 1 2 2 2 0 Ribosomal subunit 39S FbpA PF05833.11 gi|134045609|ref|YP_001097095.1| - 7e-77 259.1 25.8 9.4e-77 258.7 25.8 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|134045609|ref|YP_001097095.1| - 5.5e-23 81.7 0.0 1.4e-22 80.4 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain APG6_N PF17675.1 gi|134045609|ref|YP_001097095.1| - 5.1 7.6 20.0 4.6 7.8 9.0 2.7 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF4022 PF13214.6 gi|134045610|ref|YP_001097096.1| - 0.014 15.7 0.4 0.017 15.3 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4022) DUF3634 PF12321.8 gi|134045610|ref|YP_001097096.1| - 0.044 14.2 1.0 0.049 14.0 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3634) Halogen_Hydrol PF10112.9 gi|134045610|ref|YP_001097096.1| - 0.11 12.5 1.4 0.12 12.3 1.4 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein tRNA-synt_1d PF00750.19 gi|134045611|ref|YP_001097097.1| - 2.5e-33 115.5 3.4 4.3e-33 114.7 3.4 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|134045611|ref|YP_001097097.1| - 1.3e-32 112.4 4.9 6.8e-32 110.1 0.3 3.5 3 0 0 3 3 3 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|134045611|ref|YP_001097097.1| - 1e-18 67.7 0.1 1.3e-17 64.1 0.1 2.9 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|134045611|ref|YP_001097097.1| - 1.8e-06 27.1 0.1 0.1 11.5 0.0 3.5 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|134045611|ref|YP_001097097.1| - 5.3e-05 22.7 0.2 0.00015 21.2 0.1 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain RAMPs PF03787.15 gi|134045611|ref|YP_001097097.1| - 0.0003 20.9 0.8 0.00062 19.9 0.8 1.5 1 0 0 1 1 1 1 RAMP superfamily tRNA-synt_1g PF09334.11 gi|134045611|ref|YP_001097097.1| - 0.0017 17.2 0.7 3.3 6.4 0.0 3.9 5 0 0 5 5 5 2 tRNA synthetases class I (M) Cep57_CLD_2 PF14197.6 gi|134045611|ref|YP_001097097.1| - 6.3 7.0 7.5 0.46 10.6 1.0 2.5 3 0 0 3 3 3 0 Centrosome localisation domain of PPC89 Fe-S_assembly PF04384.13 gi|134045612|ref|YP_001097098.1| - 0.082 13.5 0.0 0.24 12.0 0.0 1.8 2 0 0 2 2 2 0 Iron-sulphur cluster assembly MCM PF00493.23 gi|134045613|ref|YP_001097099.1| - 4.6e-75 251.5 0.0 7.8e-75 250.8 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain MCM_lid PF17855.1 gi|134045613|ref|YP_001097099.1| - 3.1e-21 75.6 0.4 2.1e-19 69.7 0.1 3.1 3 0 0 3 3 3 1 MCM AAA-lid domain MCM_OB PF17207.3 gi|134045613|ref|YP_001097099.1| - 1.9e-15 56.8 1.0 3.6e-15 55.9 0.3 1.8 2 0 0 2 2 2 1 MCM OB domain Mg_chelatase PF01078.21 gi|134045613|ref|YP_001097099.1| - 2.5e-10 40.1 0.0 6.8e-07 28.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|134045613|ref|YP_001097099.1| - 5.1e-08 33.0 0.0 9.8e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|134045613|ref|YP_001097099.1| - 0.035 14.5 0.0 0.084 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_3 PF07726.11 gi|134045613|ref|YP_001097099.1| - 0.061 13.2 0.0 0.82 9.5 0.0 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) B5 PF03484.15 gi|134045613|ref|YP_001097099.1| - 0.07 13.4 2.1 34 4.8 0.0 4.2 4 0 0 4 4 4 0 tRNA synthetase B5 domain AAA_22 PF13401.6 gi|134045613|ref|YP_001097099.1| - 0.089 13.1 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|134045613|ref|YP_001097099.1| - 0.15 11.8 0.6 0.28 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain Sar8_2 PF03058.14 gi|134045613|ref|YP_001097099.1| - 0.44 11.1 2.9 0.87 10.2 1.7 2.1 2 0 0 2 2 2 0 Sar8.2 family TetR_N PF00440.23 gi|134045614|ref|YP_001097100.1| - 1.7e-16 59.8 0.0 3.3e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|134045614|ref|YP_001097100.1| - 5.3e-05 23.4 0.7 0.00011 22.3 0.1 1.7 2 1 0 2 2 2 1 Helix-turn-helix of insertion element transposase UPF0122 PF04297.14 gi|134045614|ref|YP_001097100.1| - 0.00042 20.5 1.2 0.00042 20.5 1.2 2.2 2 0 0 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like DUF5055 PF16478.5 gi|134045614|ref|YP_001097100.1| - 0.016 15.4 3.9 0.56 10.5 0.1 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF5055) DUF3837 PF12939.7 gi|134045614|ref|YP_001097100.1| - 0.019 15.3 1.1 0.019 15.3 1.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3837) HTH_40 PF14493.6 gi|134045614|ref|YP_001097100.1| - 0.028 14.9 3.8 0.037 14.5 0.9 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|134045614|ref|YP_001097100.1| - 0.066 12.8 0.1 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|134045614|ref|YP_001097100.1| - 0.069 13.0 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4375 PF14300.6 gi|134045614|ref|YP_001097100.1| - 0.14 12.4 5.7 3.7 7.8 3.8 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4375) HAD_2 PF13419.6 gi|134045614|ref|YP_001097100.1| - 0.45 10.6 6.6 0.56 10.3 0.9 2.1 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase MMPL PF03176.15 gi|134045615|ref|YP_001097101.1| - 9.6e-39 133.2 4.4 9.6e-39 133.2 4.4 1.7 2 0 0 2 2 2 1 MMPL family Patched PF02460.18 gi|134045615|ref|YP_001097101.1| - 1.4e-11 43.3 5.6 1.7e-11 43.0 3.8 1.8 2 0 0 2 2 2 1 Patched family SecD_SecF PF02355.16 gi|134045615|ref|YP_001097101.1| - 9e-08 31.7 8.1 9e-08 31.7 8.1 1.5 2 0 0 2 2 2 1 Protein export membrane protein ACR_tran PF00873.19 gi|134045615|ref|YP_001097101.1| - 7.4e-07 27.3 11.0 7.4e-07 27.3 11.0 1.8 2 1 0 2 2 2 1 AcrB/AcrD/AcrF family DUF2207 PF09972.9 gi|134045615|ref|YP_001097101.1| - 0.4 9.4 3.1 1.8 7.2 0.1 2.8 3 0 0 3 3 3 0 Predicted membrane protein (DUF2207) NPCBM_assoc PF10633.9 gi|134045616|ref|YP_001097102.1| - 1.3e-13 50.9 0.1 0.00064 19.9 0.0 5.0 4 1 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|134045616|ref|YP_001097102.1| - 6.4e-10 39.2 17.8 0.027 14.7 0.2 5.4 3 2 1 5 5 5 3 CARDB DUF11 PF01345.18 gi|134045616|ref|YP_001097102.1| - 6.3e-05 23.2 3.9 0.23 11.8 0.1 4.4 4 1 0 4 4 4 1 Domain of unknown function DUF11 DUF4352 PF11611.8 gi|134045616|ref|YP_001097102.1| - 0.00073 19.8 9.5 0.038 14.3 1.8 3.5 2 1 0 2 2 2 2 Domain of unknown function (DUF4352) TRAP_beta PF05753.14 gi|134045616|ref|YP_001097102.1| - 0.0014 18.1 1.2 0.32 10.4 0.0 3.3 3 0 0 3 3 3 1 Translocon-associated protein beta (TRAPB) AP3B1_C PF14796.6 gi|134045616|ref|YP_001097102.1| - 0.013 15.7 3.6 0.63 10.3 0.1 2.9 3 0 0 3 3 3 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal DUF756 PF05506.12 gi|134045616|ref|YP_001097102.1| - 0.033 15.1 0.3 19 6.2 0.0 4.2 2 2 2 4 4 4 0 Domain of unknown function (DUF756) ASH PF15780.5 gi|134045616|ref|YP_001097102.1| - 0.042 14.0 0.1 3.4 7.9 0.1 2.9 2 0 0 2 2 2 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Gram_pos_anchor PF00746.21 gi|134045616|ref|YP_001097102.1| - 0.097 12.6 0.4 0.097 12.6 0.4 2.7 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Pentapeptide_2 PF01469.18 gi|134045616|ref|YP_001097102.1| - 0.31 10.9 5.4 8.2 6.4 0.4 2.8 2 0 0 2 2 2 0 Pentapeptide repeats (8 copies) CBM49 PF09478.10 gi|134045616|ref|YP_001097102.1| - 2.8 8.3 5.9 7.2 7.0 0.2 3.8 4 0 0 4 4 4 0 Carbohydrate binding domain CBM49 AI-2E_transport PF01594.16 gi|134045617|ref|YP_001097103.1| - 6.9e-48 163.5 32.9 2.3e-47 161.7 32.9 1.7 1 1 0 1 1 1 1 AI-2E family transporter PEGA PF08308.11 gi|134045618|ref|YP_001097104.1| - 1.5e-20 72.8 0.4 4.7e-20 71.3 0.2 1.9 2 0 0 2 2 2 1 PEGA domain HMGL-like PF00682.19 gi|134045619|ref|YP_001097105.1| - 7.3e-80 268.3 1.8 7.3e-80 268.3 1.8 2.0 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|134045619|ref|YP_001097105.1| - 3.6e-26 91.6 1.9 7.5e-26 90.6 1.9 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AA_kinase PF00696.28 gi|134045620|ref|YP_001097106.1| - 8.3e-57 192.5 1.3 1.3e-56 191.9 1.3 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT PF01842.25 gi|134045620|ref|YP_001097106.1| - 3.6e-15 55.4 0.3 2.1e-06 27.4 0.1 2.8 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|134045620|ref|YP_001097106.1| - 2e-12 46.7 1.1 4.9e-06 26.2 0.0 2.8 2 0 0 2 2 2 2 ACT domain CBS PF00571.28 gi|134045621|ref|YP_001097107.1| - 5.4e-43 145.2 16.1 1.1e-12 48.2 0.9 4.3 4 0 0 4 4 4 4 CBS domain PRC PF05239.16 gi|134045621|ref|YP_001097107.1| - 0.029 14.5 2.2 37 4.5 0.1 4.1 3 1 0 3 3 3 0 PRC-barrel domain DUF3659 PF12396.8 gi|134045621|ref|YP_001097107.1| - 0.11 12.4 0.5 2.8 7.9 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) CBFD_NFYB_HMF PF00808.23 gi|134045622|ref|YP_001097108.1| - 1.5e-10 41.2 3.3 1.5e-10 41.2 3.3 1.5 2 0 0 2 2 2 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|134045622|ref|YP_001097108.1| - 2.4e-05 24.7 1.7 2.4e-05 24.7 1.7 1.7 2 0 0 2 2 2 1 Core histone H2A/H2B/H3/H4 DUF1931 PF09123.11 gi|134045622|ref|YP_001097108.1| - 0.0041 17.2 2.6 0.0047 17.0 2.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) DUF4071 PF13281.6 gi|134045622|ref|YP_001097108.1| - 0.016 14.3 2.8 0.019 14.0 2.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) CENP-S PF15630.6 gi|134045622|ref|YP_001097108.1| - 0.072 13.5 0.8 0.072 13.5 0.8 1.7 1 1 1 2 2 2 0 CENP-S protein CENP-T_C PF15511.6 gi|134045622|ref|YP_001097108.1| - 0.084 13.0 1.0 0.15 12.2 1.0 1.5 1 1 0 1 1 1 0 Centromere kinetochore component CENP-T histone fold RasGAP PF00616.19 gi|134045622|ref|YP_001097108.1| - 0.13 11.9 1.9 0.16 11.7 1.9 1.3 1 1 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase HMGL-like PF00682.19 gi|134045623|ref|YP_001097109.1| - 0.0002 21.0 0.0 0.0063 16.1 0.0 2.5 3 0 0 3 3 3 2 HMGL-like CPSase_L_D2 PF02786.17 gi|134045624|ref|YP_001097110.1| - 2.4e-116 386.6 4.3 2.3e-78 262.5 0.2 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|134045624|ref|YP_001097110.1| - 1.3e-39 135.4 0.4 5.1e-39 133.4 0.1 2.3 2 1 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|134045624|ref|YP_001097110.1| - 3.3e-20 72.1 0.9 8.5e-19 67.5 0.0 3.7 5 0 0 5 5 4 1 MGS-like domain Dala_Dala_lig_C PF07478.13 gi|134045624|ref|YP_001097110.1| - 8.3e-17 61.4 2.0 1.3e-08 34.7 0.2 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|134045624|ref|YP_001097110.1| - 2.7e-16 59.6 1.4 8.2e-10 38.5 0.2 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|134045624|ref|YP_001097110.1| - 2.3e-14 53.2 0.0 1.5e-06 28.0 0.0 2.8 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|134045624|ref|YP_001097110.1| - 3.4e-12 46.7 1.7 9.6e-06 25.7 0.1 2.5 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|134045624|ref|YP_001097110.1| - 2e-09 37.5 1.5 9.7e-05 22.2 0.3 2.6 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|134045624|ref|YP_001097110.1| - 3.1e-06 26.9 1.8 0.00093 18.8 0.3 3.0 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.6 gi|134045624|ref|YP_001097110.1| - 0.005 16.3 0.8 1.7 8.0 0.0 2.9 3 0 0 3 3 3 2 ATP-grasp domain HTH_23 PF13384.6 gi|134045624|ref|YP_001097110.1| - 0.023 14.5 0.0 2 8.3 0.0 3.5 4 0 0 4 4 4 0 Homeodomain-like domain vATP-synt_E PF01991.18 gi|134045624|ref|YP_001097110.1| - 0.065 12.6 0.8 5.6 6.3 0.2 3.0 2 1 1 3 3 3 0 ATP synthase (E/31 kDa) subunit Epimerase PF01370.21 gi|134045624|ref|YP_001097110.1| - 0.13 11.7 0.0 0.33 10.4 0.0 1.6 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ID PF18543.1 gi|134045624|ref|YP_001097110.1| - 0.14 12.2 0.7 7.7 6.6 0.1 3.2 2 1 1 3 3 3 0 Intracellular delivery domain Exo_endo_phos PF03372.23 gi|134045625|ref|YP_001097111.1| - 3e-23 82.6 0.0 3.4e-23 82.4 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|134045625|ref|YP_001097111.1| - 6.9e-05 22.7 0.1 0.00019 21.2 0.1 1.7 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase tRNA-synt_1c PF00749.21 gi|134045626|ref|YP_001097112.1| - 3e-76 256.3 0.0 4.2e-76 255.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|134045626|ref|YP_001097112.1| - 1.7e-30 106.1 0.1 3.3e-30 105.2 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1f PF01921.18 gi|134045626|ref|YP_001097112.1| - 0.00044 19.3 0.0 0.34 9.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) DegS PF05384.11 gi|134045626|ref|YP_001097112.1| - 0.053 13.0 0.7 3.6 7.1 0.3 2.4 2 0 0 2 2 2 0 Sensor protein DegS PseudoU_synth_2 PF00849.22 gi|134045627|ref|YP_001097113.1| - 2.9e-32 112.0 0.2 4.4e-32 111.4 0.2 1.3 1 0 0 1 1 1 1 RNA pseudouridylate synthase HATPase_c_5 PF14501.6 gi|134045627|ref|YP_001097113.1| - 0.01 15.8 0.4 0.029 14.2 0.4 1.8 1 0 0 1 1 1 0 GHKL domain Amidohydro_1 PF01979.20 gi|134045628|ref|YP_001097114.1| - 1.6e-20 73.7 1.2 4.9e-20 72.1 1.2 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|134045628|ref|YP_001097114.1| - 7.5e-09 35.6 0.0 3.4e-06 26.8 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family IGPS PF00218.21 gi|134045629|ref|YP_001097115.1| - 2.5e-53 180.9 0.8 2.9e-53 180.7 0.8 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase Glycos_transf_3 PF00591.21 gi|134045630|ref|YP_001097116.1| - 1.1e-75 254.5 0.0 1.4e-75 254.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|134045630|ref|YP_001097116.1| - 4.6e-13 48.8 0.4 1.1e-12 47.5 0.4 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Chorismate_bind PF00425.18 gi|134045631|ref|YP_001097117.1| - 4.8e-90 301.6 0.0 2.3e-89 299.4 0.0 1.8 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|134045631|ref|YP_001097117.1| - 1.3e-18 67.6 2.2 8.2e-17 61.7 0.3 2.6 2 1 0 2 2 2 2 Anthranilate synthase component I, N terminal region JCAD PF15351.6 gi|134045631|ref|YP_001097117.1| - 0.12 10.1 0.0 0.15 9.8 0.0 1.1 1 0 0 1 1 1 0 Junctional protein associated with coronary artery disease GATase PF00117.28 gi|134045632|ref|YP_001097118.1| - 6.1e-45 153.3 0.0 7.2e-45 153.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|134045632|ref|YP_001097118.1| - 7.8e-12 45.4 0.2 5.2e-11 42.7 0.2 1.9 1 1 0 1 1 1 1 Peptidase C26 PRAI PF00697.22 gi|134045633|ref|YP_001097119.1| - 1.8e-28 99.6 0.1 2.1e-28 99.4 0.1 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PALP PF00291.25 gi|134045634|ref|YP_001097120.1| - 4.3e-45 154.4 0.2 5e-45 154.2 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 gi|134045635|ref|YP_001097121.1| - 2.8e-79 265.6 0.0 3.1e-79 265.5 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|134045635|ref|YP_001097121.1| - 2e-07 30.7 0.0 7.8e-07 28.8 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein PA PF02225.22 gi|134045635|ref|YP_001097121.1| - 3.1e-05 23.9 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 2 PA domain FMN_dh PF01070.18 gi|134045635|ref|YP_001097121.1| - 0.0011 18.1 0.0 0.0014 17.7 0.0 1.1 1 0 0 1 1 1 1 FMN-dependent dehydrogenase PcrB PF01884.17 gi|134045635|ref|YP_001097121.1| - 0.073 12.5 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 PcrB family NanE PF04131.14 gi|134045635|ref|YP_001097121.1| - 0.097 11.8 0.1 0.16 11.1 0.1 1.4 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Nre_N PF04894.12 gi|134045636|ref|YP_001097122.1| - 1.3e-101 340.0 0.0 1.6e-101 339.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|134045636|ref|YP_001097122.1| - 2.5e-38 130.4 0.1 4.5e-38 129.6 0.1 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Sbt_1 PF05982.12 gi|134045637|ref|YP_001097123.1| - 0.03 13.6 4.8 0.038 13.3 4.8 1.0 1 0 0 1 1 1 0 Na+-dependent bicarbonate transporter superfamily Asp-Al_Ex PF06826.12 gi|134045637|ref|YP_001097123.1| - 0.088 12.6 6.4 0.12 12.2 6.4 1.1 1 0 0 1 1 1 0 Predicted Permease Membrane Region Lys_export PF03956.13 gi|134045638|ref|YP_001097124.1| - 9.7e-54 181.8 16.9 1.2e-53 181.5 16.9 1.0 1 0 0 1 1 1 1 Lysine exporter LysO Beta_helix PF13229.6 gi|134045639|ref|YP_001097125.1| - 2e-18 66.8 35.8 5.6e-09 36.0 8.4 2.3 1 1 0 2 2 2 2 Right handed beta helix region NosD PF05048.13 gi|134045639|ref|YP_001097125.1| - 1.3e-16 60.6 27.1 2.4e-11 43.4 16.8 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) NosD PF05048.13 gi|134045640|ref|YP_001097126.1| - 2e-10 40.4 11.5 4.5e-10 39.2 11.5 1.7 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|134045640|ref|YP_001097126.1| - 2.5e-10 40.4 16.7 2.5e-10 40.4 16.7 1.5 1 1 0 1 1 1 1 Right handed beta helix region Invasin_D3 PF09134.10 gi|134045640|ref|YP_001097126.1| - 0.15 12.4 0.1 0.31 11.4 0.1 1.5 1 0 0 1 1 1 0 Invasin, domain 3 DUF2202 PF09968.9 gi|134045641|ref|YP_001097127.1| - 3.7e-74 248.0 1.0 5.1e-74 247.5 1.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Rubrerythrin PF02915.17 gi|134045641|ref|YP_001097127.1| - 0.053 13.9 0.0 0.13 12.7 0.0 1.7 1 1 0 1 1 1 0 Rubrerythrin ParE_toxin PF05016.15 gi|134045642|ref|YP_001097128.1| - 1.1e-09 38.7 0.6 1.3e-09 38.5 0.6 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE YafQ_toxin PF15738.5 gi|134045642|ref|YP_001097128.1| - 4.9e-07 30.0 4.1 8e-07 29.3 4.1 1.3 1 1 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE-like_toxin PF15781.5 gi|134045642|ref|YP_001097128.1| - 3.4e-06 26.9 1.0 4.4e-06 26.6 1.0 1.1 1 0 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system YoeB_toxin PF06769.14 gi|134045642|ref|YP_001097128.1| - 1.2e-05 25.3 0.8 1.8e-05 24.7 0.8 1.3 1 0 0 1 1 1 1 YoeB-like toxin of bacterial type II toxin-antitoxin system PAS_9 PF13426.7 gi|134045642|ref|YP_001097128.1| - 0.0087 16.3 0.1 0.0097 16.2 0.1 1.1 1 0 0 1 1 1 1 PAS domain HigB-like_toxin PF05015.13 gi|134045642|ref|YP_001097128.1| - 0.013 15.9 1.3 0.017 15.5 1.3 1.2 1 0 0 1 1 1 0 RelE-like toxin of type II toxin-antitoxin system HigB RHH_1 PF01402.21 gi|134045643|ref|YP_001097129.1| - 0.0018 18.1 0.0 0.022 14.7 0.0 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RelB PF04221.12 gi|134045643|ref|YP_001097129.1| - 0.0056 16.6 0.0 0.006 16.5 0.0 1.3 1 1 0 1 1 1 1 RelB antitoxin DUF2683 PF10884.8 gi|134045643|ref|YP_001097129.1| - 0.0067 16.7 1.2 0.0077 16.5 1.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2683) Lipocalin PF00061.23 gi|134045643|ref|YP_001097129.1| - 0.0069 16.6 0.2 0.97 9.6 0.1 2.1 1 1 1 2 2 2 2 Lipocalin / cytosolic fatty-acid binding protein family RHH_5 PF07878.11 gi|134045643|ref|YP_001097129.1| - 0.02 14.8 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 MatP_C PF17414.2 gi|134045643|ref|YP_001097129.1| - 0.038 14.2 0.0 0.057 13.6 0.0 1.2 1 0 0 1 1 1 0 MatP C-terminal ribbon-helix-helix domain Transketolase_N PF00456.21 gi|134045643|ref|YP_001097129.1| - 0.045 12.7 0.0 0.05 12.6 0.0 1.0 1 0 0 1 1 1 0 Transketolase, thiamine diphosphate binding domain ParD_like PF11903.8 gi|134045643|ref|YP_001097129.1| - 0.047 13.8 0.0 0.054 13.6 0.0 1.2 1 0 0 1 1 1 0 ParD-like antitoxin of type II bacterial toxin-antitoxin system ParG PF09274.10 gi|134045643|ref|YP_001097129.1| - 0.049 13.8 0.2 0.99 9.6 0.0 2.0 2 0 0 2 2 2 0 ParG Alpha_kinase PF02816.18 gi|134045643|ref|YP_001097129.1| - 0.053 13.6 0.8 0.058 13.5 0.8 1.0 1 0 0 1 1 1 0 Alpha-kinase family Fib_alpha PF08702.10 gi|134045644|ref|YP_001097130.1| - 0.0012 19.1 3.8 0.0012 19.1 3.8 2.4 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family APG17 PF04108.12 gi|134045644|ref|YP_001097130.1| - 0.0099 15.0 10.7 0.32 10.1 5.0 2.8 1 1 0 2 2 2 2 Autophagy protein Apg17 TrmB PF01978.19 gi|134045644|ref|YP_001097130.1| - 0.023 14.6 0.1 0.049 13.5 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB XhlA PF10779.9 gi|134045644|ref|YP_001097130.1| - 0.026 14.7 0.1 0.026 14.7 0.1 4.2 3 2 1 4 4 4 0 Haemolysin XhlA MerR-DNA-bind PF09278.11 gi|134045644|ref|YP_001097130.1| - 0.082 13.5 0.2 0.19 12.3 0.2 1.6 1 0 0 1 1 1 0 MerR, DNA binding HemX PF04375.14 gi|134045644|ref|YP_001097130.1| - 0.09 12.0 6.9 0.079 12.2 3.7 2.3 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase HTH_39 PF14090.6 gi|134045644|ref|YP_001097130.1| - 0.094 12.5 0.0 0.28 11.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HigB-like_toxin PF05015.13 gi|134045644|ref|YP_001097130.1| - 0.14 12.6 4.9 0.21 12.0 3.9 1.9 1 1 1 2 2 2 0 RelE-like toxin of type II toxin-antitoxin system HigB KxDL PF10241.9 gi|134045644|ref|YP_001097130.1| - 0.15 12.4 8.0 4.2 7.7 0.2 3.6 2 1 1 3 3 3 0 Uncharacterized conserved protein DUF1633 PF07794.11 gi|134045644|ref|YP_001097130.1| - 0.26 9.4 2.3 0.3 9.2 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1633) APG6_N PF17675.1 gi|134045644|ref|YP_001097130.1| - 0.46 11.0 12.9 0.26 11.8 7.7 2.2 1 1 0 2 2 2 0 Apg6 coiled-coil region DUF948 PF06103.11 gi|134045644|ref|YP_001097130.1| - 0.51 10.6 3.3 0.74 10.1 0.3 2.7 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) TK PF00265.18 gi|134045644|ref|YP_001097130.1| - 0.61 9.9 5.3 0.19 11.6 2.2 1.7 2 0 0 2 2 2 0 Thymidine kinase WYL_3 PF18488.1 gi|134045644|ref|YP_001097130.1| - 0.67 10.4 5.2 3.6 8.0 0.3 3.2 3 0 0 3 3 3 0 WYL domain MitMem_reg PF13012.6 gi|134045644|ref|YP_001097130.1| - 0.92 10.0 7.6 6.2 7.3 4.6 2.7 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function BLOC1_2 PF10046.9 gi|134045644|ref|YP_001097130.1| - 1.4 9.2 15.2 0.11 12.8 2.3 3.5 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PCRF PF03462.18 gi|134045644|ref|YP_001097130.1| - 8.3 6.2 10.9 5.8 6.7 4.5 2.3 1 1 1 2 2 2 0 PCRF domain IBV_3C PF03620.13 gi|134045645|ref|YP_001097131.1| - 0.064 13.7 0.0 0.091 13.3 0.0 1.2 1 0 0 1 1 1 0 IBV 3C protein APH PF01636.23 gi|134045646|ref|YP_001097132.1| - 7.4e-21 75.2 0.0 9.3e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 gi|134045646|ref|YP_001097132.1| - 0.017 14.5 0.2 0.029 13.7 0.1 1.5 2 0 0 2 2 2 0 Ecdysteroid kinase Choline_kinase PF01633.20 gi|134045646|ref|YP_001097132.1| - 0.25 10.9 4.9 0.065 12.8 0.9 2.1 2 1 0 2 2 2 0 Choline/ethanolamine kinase Gate PF07670.14 gi|134045647|ref|YP_001097133.1| - 5.1e-08 33.2 19.2 4.2e-06 27.0 2.2 2.8 2 2 0 2 2 2 2 Nucleoside recognition CbiA PF01656.23 gi|134045648|ref|YP_001097134.1| - 8e-15 55.0 0.1 1e-14 54.7 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|134045648|ref|YP_001097134.1| - 8.4e-08 32.0 0.0 0.00046 19.7 0.1 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|134045648|ref|YP_001097134.1| - 2.3e-07 30.5 2.9 9.1e-05 22.0 0.3 2.2 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|134045648|ref|YP_001097134.1| - 8.9e-07 28.6 0.6 5.5e-06 26.0 0.1 2.3 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|134045648|ref|YP_001097134.1| - 1.3e-06 28.5 0.1 2.4e-06 27.6 0.1 1.7 1 1 1 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|134045648|ref|YP_001097134.1| - 0.00022 21.8 0.2 0.00042 20.8 0.2 1.5 1 0 0 1 1 1 1 ABC transporter SRP54 PF00448.22 gi|134045648|ref|YP_001097134.1| - 0.00026 20.7 0.1 0.0033 17.1 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_26 PF13500.6 gi|134045648|ref|YP_001097134.1| - 0.00055 19.8 0.6 0.0025 17.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.10 gi|134045648|ref|YP_001097134.1| - 0.00056 19.4 0.1 0.001 18.6 0.1 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 ArsA_ATPase PF02374.15 gi|134045648|ref|YP_001097134.1| - 0.0013 17.9 0.1 0.0021 17.3 0.1 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase RNA_helicase PF00910.22 gi|134045648|ref|YP_001097134.1| - 0.0021 18.4 0.0 0.011 16.1 0.0 2.2 3 0 0 3 3 3 1 RNA helicase CLP1_P PF16575.5 gi|134045648|ref|YP_001097134.1| - 0.0044 16.8 0.1 0.0096 15.7 0.0 1.6 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MMR_HSR1 PF01926.23 gi|134045648|ref|YP_001097134.1| - 0.0049 16.9 0.0 0.81 9.8 0.0 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|134045648|ref|YP_001097134.1| - 0.0049 16.2 0.0 0.0076 15.5 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin MeaB PF03308.16 gi|134045648|ref|YP_001097134.1| - 0.0054 15.8 0.1 0.01 14.9 0.1 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|134045648|ref|YP_001097134.1| - 0.0086 16.0 0.4 0.057 13.3 0.2 2.1 2 0 0 2 2 2 1 NTPase AAA_24 PF13479.6 gi|134045648|ref|YP_001097134.1| - 0.012 15.3 0.2 0.03 14.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|134045648|ref|YP_001097134.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase TrwB_AAD_bind PF10412.9 gi|134045648|ref|YP_001097134.1| - 0.018 14.0 0.0 0.028 13.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|134045648|ref|YP_001097134.1| - 0.028 14.8 0.0 0.032 14.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.14 gi|134045648|ref|YP_001097134.1| - 0.035 14.0 0.4 0.29 11.0 0.1 2.4 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|134045648|ref|YP_001097134.1| - 0.04 13.8 0.1 0.094 12.6 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_10 PF12846.7 gi|134045648|ref|YP_001097134.1| - 0.043 12.7 0.1 0.1 11.5 0.1 1.6 2 0 0 2 2 2 0 AAA-like domain ATPase_2 PF01637.18 gi|134045648|ref|YP_001097134.1| - 0.048 13.6 0.0 0.075 12.9 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|134045648|ref|YP_001097134.1| - 0.048 13.9 0.1 0.094 13.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|134045648|ref|YP_001097134.1| - 0.049 13.3 0.1 0.081 12.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain TrkA_N PF02254.18 gi|134045648|ref|YP_001097134.1| - 0.05 13.9 0.3 0.75 10.1 0.1 2.4 2 0 0 2 2 2 0 TrkA-N domain DUF87 PF01935.17 gi|134045648|ref|YP_001097134.1| - 0.061 13.4 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain IstB_IS21 PF01695.17 gi|134045648|ref|YP_001097134.1| - 0.067 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|134045648|ref|YP_001097134.1| - 0.067 12.4 0.2 0.11 11.7 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain GTP_EFTU PF00009.27 gi|134045648|ref|YP_001097134.1| - 0.093 12.3 0.4 3.9 7.0 0.1 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.17 gi|134045648|ref|YP_001097134.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF815 PF05673.13 gi|134045648|ref|YP_001097134.1| - 0.14 11.3 0.1 0.22 10.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_33 PF13671.6 gi|134045648|ref|YP_001097134.1| - 0.16 12.1 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|134045648|ref|YP_001097134.1| - 0.19 11.5 0.1 0.28 10.9 0.1 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Methyltransf_11 PF08241.12 gi|134045649|ref|YP_001097135.1| - 5.3e-25 87.9 0.0 1e-24 87.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|134045649|ref|YP_001097135.1| - 3.2e-23 82.2 0.0 5.1e-23 81.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|134045649|ref|YP_001097135.1| - 2.2e-22 79.6 0.0 3.9e-22 78.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|134045649|ref|YP_001097135.1| - 1e-19 70.8 0.0 2e-19 69.8 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|134045649|ref|YP_001097135.1| - 2.6e-18 66.4 0.0 4.2e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|134045649|ref|YP_001097135.1| - 1.3e-16 61.2 0.0 2.2e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|134045649|ref|YP_001097135.1| - 2.1e-10 40.4 0.0 3.6e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|134045649|ref|YP_001097135.1| - 8.4e-09 35.2 0.0 1.3e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|134045649|ref|YP_001097135.1| - 4.1e-08 32.9 0.0 1.5e-07 31.0 0.0 1.9 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_9 PF08003.11 gi|134045649|ref|YP_001097135.1| - 3e-07 29.7 0.0 4.7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) DREV PF05219.12 gi|134045649|ref|YP_001097135.1| - 6.3e-07 28.8 0.0 2.1e-06 27.0 0.0 1.8 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_29 PF03141.16 gi|134045649|ref|YP_001097135.1| - 8.1e-05 21.4 0.0 0.00011 20.9 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase TehB PF03848.14 gi|134045649|ref|YP_001097135.1| - 0.00011 21.7 0.0 0.019 14.4 0.0 2.4 2 0 0 2 2 2 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|134045649|ref|YP_001097135.1| - 0.00015 21.2 0.0 0.00026 20.4 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|134045649|ref|YP_001097135.1| - 0.00021 21.2 0.0 0.00036 20.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|134045649|ref|YP_001097135.1| - 0.0004 19.7 0.2 0.0096 15.2 0.1 2.3 1 1 1 2 2 2 1 O-methyltransferase domain PCMT PF01135.19 gi|134045649|ref|YP_001097135.1| - 0.00045 20.0 0.0 0.00088 19.1 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|134045649|ref|YP_001097135.1| - 0.00059 19.5 0.0 0.00083 19.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_8 PF05148.15 gi|134045649|ref|YP_001097135.1| - 0.002 18.0 0.0 0.029 14.2 0.0 2.2 1 1 0 1 1 1 1 Hypothetical methyltransferase tRNA_U5-meth_tr PF05958.11 gi|134045649|ref|YP_001097135.1| - 0.0031 16.6 0.0 0.0043 16.1 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_15 PF09445.10 gi|134045649|ref|YP_001097135.1| - 0.0051 16.4 0.2 0.017 14.7 0.1 1.8 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|134045649|ref|YP_001097135.1| - 0.011 15.1 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_32 PF13679.6 gi|134045649|ref|YP_001097135.1| - 0.014 15.4 0.0 0.022 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|134045649|ref|YP_001097135.1| - 0.015 15.1 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein MetW PF07021.12 gi|134045649|ref|YP_001097135.1| - 0.026 14.1 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW UPF0020 PF01170.18 gi|134045649|ref|YP_001097135.1| - 0.058 13.1 0.0 0.15 11.7 0.0 1.7 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Radical_SAM PF04055.21 gi|134045650|ref|YP_001097136.1| - 2.5e-07 31.2 0.0 7.9e-07 29.6 0.0 1.9 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|134045650|ref|YP_001097136.1| - 0.0012 19.1 0.1 0.0058 16.9 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|134045650|ref|YP_001097136.1| - 0.016 15.4 0.0 0.042 14.0 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain YmzC PF14157.6 gi|134045650|ref|YP_001097136.1| - 0.1 12.7 1.1 0.2 11.8 0.2 2.0 2 0 0 2 2 2 0 YmzC-like protein Na_Ca_ex PF01699.24 gi|134045651|ref|YP_001097137.1| - 8.7e-51 171.8 33.5 6.5e-26 91.1 16.2 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein PspC PF04024.12 gi|134045651|ref|YP_001097137.1| - 0.76 9.6 0.0 0.76 9.6 0.0 3.9 3 2 0 3 3 3 0 PspC domain EVE PF01878.18 gi|134045652|ref|YP_001097138.1| - 2.6e-20 72.9 0.6 2.8e-20 72.8 0.6 1.0 1 0 0 1 1 1 1 EVE domain Dev_Cell_Death PF10539.9 gi|134045652|ref|YP_001097138.1| - 0.014 15.2 0.0 0.028 14.3 0.0 1.6 1 1 0 1 1 1 0 Development and cell death domain TBP PF00352.21 gi|134045653|ref|YP_001097139.1| - 8.2e-46 153.9 0.2 2.2e-25 88.4 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|134045653|ref|YP_001097139.1| - 5.4e-06 26.4 0.0 0.00021 21.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3378) YodL PF14191.6 gi|134045653|ref|YP_001097139.1| - 0.041 14.7 0.1 0.42 11.5 0.0 2.1 1 1 1 2 2 2 0 YodL-like Methylase_S PF01420.19 gi|134045654|ref|YP_001097140.1| - 1e-06 29.1 7.4 1.4e-06 28.7 7.4 1.2 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain N6_Mtase PF02384.16 gi|134045655|ref|YP_001097141.1| - 1.7e-114 382.3 0.2 7.8e-114 380.1 0.0 1.9 2 0 0 2 2 2 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|134045655|ref|YP_001097141.1| - 4.4e-28 98.6 5.0 4.4e-28 98.6 5.0 2.0 2 0 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|134045655|ref|YP_001097141.1| - 4.2e-07 29.9 0.0 5.8e-06 26.1 0.0 2.3 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|134045655|ref|YP_001097141.1| - 8.1e-07 28.7 0.0 1.7e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Eco57I PF07669.11 gi|134045655|ref|YP_001097141.1| - 1e-05 25.9 0.0 4e-05 24.1 0.0 2.0 1 1 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.6 gi|134045655|ref|YP_001097141.1| - 0.00018 21.3 0.0 0.00075 19.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|134045655|ref|YP_001097141.1| - 0.029 14.0 0.0 0.073 12.6 0.0 1.7 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase AviRa PF11599.8 gi|134045655|ref|YP_001097141.1| - 0.068 12.6 0.1 0.22 11.0 0.0 1.8 2 0 0 2 2 2 0 RRNA methyltransferase AviRa DUF2730 PF10805.8 gi|134045655|ref|YP_001097141.1| - 0.14 12.3 0.9 0.42 10.7 0.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) DUF4927 PF16279.5 gi|134045655|ref|YP_001097141.1| - 0.26 12.3 2.6 0.33 12.0 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4927) Methylase_S PF01420.19 gi|134045656|ref|YP_001097142.1| - 1.4e-29 103.4 10.6 5.8e-24 85.2 1.0 2.3 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain Mvb12 PF09452.10 gi|134045656|ref|YP_001097142.1| - 0.023 15.1 0.2 0.59 10.6 0.0 2.6 2 0 0 2 2 2 0 ESCRT-I subunit Mvb12 SWI2_SNF2 PF18766.1 gi|134045657|ref|YP_001097143.1| - 8.3e-80 267.7 3.0 2.7e-79 266.0 3.0 2.0 1 0 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|134045657|ref|YP_001097143.1| - 3.1e-32 112.1 6.2 3.1e-32 112.1 6.2 2.8 2 1 1 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|134045657|ref|YP_001097143.1| - 4.3e-20 72.4 1.2 4.3e-20 72.4 1.2 3.0 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DUF3387 PF11867.8 gi|134045657|ref|YP_001097143.1| - 2.6e-10 40.2 12.2 2.6e-10 40.2 12.2 3.0 4 0 0 4 4 4 1 Domain of unknown function (DUF3387) FAD_SOX PF18371.1 gi|134045657|ref|YP_001097143.1| - 0.043 14.2 0.1 0.37 11.2 0.1 2.7 1 0 0 1 1 1 0 Flavin adenine dinucleotide (FAD)-dependent sulfhydryl oxidase Helicase_C PF00271.31 gi|134045657|ref|YP_001097143.1| - 0.12 12.7 0.7 3.1 8.2 0.0 3.3 3 0 0 3 3 3 0 Helicase conserved C-terminal domain RNase_J_C PF17770.1 gi|134045657|ref|YP_001097143.1| - 1 10.4 7.5 4.9 8.3 0.1 4.4 3 0 0 3 3 3 0 Ribonuclease J C-terminal domain Myb_DNA-bind_4 PF13837.6 gi|134045657|ref|YP_001097143.1| - 5.1 7.5 6.9 0.57 10.6 0.5 2.8 3 0 0 3 3 3 0 Myb/SANT-like DNA-binding domain DUF45 PF01863.17 gi|134045658|ref|YP_001097144.1| - 4e-62 209.9 4.5 4.5e-62 209.8 4.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 SprT-like PF10263.9 gi|134045658|ref|YP_001097144.1| - 4.2e-05 23.4 0.1 0.0001 22.1 0.1 1.7 1 0 0 1 1 1 1 SprT-like family WLM PF08325.10 gi|134045658|ref|YP_001097144.1| - 0.00035 20.7 0.6 0.00055 20.1 0.1 1.5 2 0 0 2 2 2 1 WLM domain CP2 PF04516.15 gi|134045658|ref|YP_001097144.1| - 0.019 14.3 2.0 0.026 13.8 2.0 1.1 1 0 0 1 1 1 0 CP2 transcription factor DUF4259 PF14078.6 gi|134045659|ref|YP_001097145.1| - 0.31 11.8 0.2 0.31 11.8 0.2 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4259) CompInhib_SCIN PF11546.8 gi|134045659|ref|YP_001097145.1| - 0.44 10.6 5.5 0.22 11.6 0.5 2.6 3 0 0 3 3 3 0 Staphylococcal complement inhibitor SCIN DEAD PF00270.29 gi|134045660|ref|YP_001097146.1| - 1.7e-08 34.4 0.0 7.1e-08 32.4 0.0 2.1 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|134045660|ref|YP_001097146.1| - 5.6e-07 29.7 1.3 5.6e-07 29.7 1.3 4.9 6 0 0 6 6 6 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|134045660|ref|YP_001097146.1| - 7.3e-06 26.3 1.8 4e-05 23.9 0.4 3.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF4250 PF14056.6 gi|134045660|ref|YP_001097146.1| - 0.0029 17.5 1.5 0.018 14.9 0.3 3.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4250) HATPase_c_4 PF13749.6 gi|134045661|ref|YP_001097147.1| - 1.3e-22 79.7 0.0 3.1e-22 78.5 0.0 1.7 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|134045661|ref|YP_001097147.1| - 1.6e-22 80.1 0.3 4.2e-22 78.8 0.3 1.8 1 0 0 1 1 1 1 Putative DNA-binding domain HTH_24 PF13412.6 gi|134045661|ref|YP_001097147.1| - 6.9e-05 22.3 1.3 0.00018 21.0 1.3 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|134045661|ref|YP_001097147.1| - 0.046 13.6 4.4 0.12 12.2 0.6 2.5 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_5 PF01022.20 gi|134045661|ref|YP_001097147.1| - 0.12 12.2 0.1 0.29 11.0 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|134045662|ref|YP_001097148.1| - 1.4e-06 28.2 0.1 1.8e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|134045662|ref|YP_001097148.1| - 4.7e-06 26.4 0.1 8.8e-06 25.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|134045662|ref|YP_001097148.1| - 6.1e-06 26.6 0.1 1.2e-05 25.8 0.1 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|134045662|ref|YP_001097148.1| - 8.1e-06 25.9 0.2 1e-05 25.6 0.2 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|134045662|ref|YP_001097148.1| - 1.2e-05 25.1 0.0 1.5e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|134045662|ref|YP_001097148.1| - 4.1e-05 23.5 1.8 6e-05 23.0 1.8 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.10 gi|134045662|ref|YP_001097148.1| - 0.00015 21.5 0.0 0.00032 20.4 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HxlR PF01638.17 gi|134045662|ref|YP_001097148.1| - 0.00031 20.5 0.4 0.00036 20.3 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Rrf2 PF02082.20 gi|134045662|ref|YP_001097148.1| - 0.002 18.4 0.2 0.0037 17.6 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator Phage_rep_O PF04492.13 gi|134045662|ref|YP_001097148.1| - 0.01 16.4 0.1 0.012 16.2 0.1 1.2 1 0 0 1 1 1 1 Bacteriophage replication protein O HTH_24 PF13412.6 gi|134045662|ref|YP_001097148.1| - 0.014 14.9 0.1 0.033 13.7 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|134045662|ref|YP_001097148.1| - 0.052 13.4 0.9 0.065 13.1 0.1 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF4357 PF14267.6 gi|134045663|ref|YP_001097149.1| - 1.5e-21 76.1 0.3 2.6e-21 75.3 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4357) RAMA PF18755.1 gi|134045663|ref|YP_001097149.1| - 0.00014 22.2 0.2 0.00031 21.1 0.2 1.7 1 1 0 1 1 1 1 Restriction Enzyme Adenine Methylase Associated Ribosomal_L22e PF01776.17 gi|134045663|ref|YP_001097149.1| - 0.0023 18.3 1.5 0.0046 17.3 1.5 1.5 1 0 0 1 1 1 1 Ribosomal L22e protein family GIY-YIG PF01541.24 gi|134045663|ref|YP_001097149.1| - 0.005 17.1 0.2 0.017 15.4 0.2 2.0 1 1 0 1 1 1 1 GIY-YIG catalytic domain DBD_HTH PF18430.1 gi|134045664|ref|YP_001097150.1| - 0.057 13.2 0.6 10 6.0 0.1 2.4 2 0 0 2 2 2 0 Putative DNA-binding domain NTase_sub_bind PF08780.11 gi|134045665|ref|YP_001097151.1| - 2.4e-25 88.9 0.6 2.7e-25 88.8 0.6 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase substrate binding protein like HEPN_Apea PF18739.1 gi|134045665|ref|YP_001097151.1| - 0.0039 17.6 8.5 0.0092 16.4 8.5 1.5 1 1 0 1 1 1 1 Apea-like HEPN Fic PF02661.18 gi|134045666|ref|YP_001097152.1| - 5.5e-24 84.9 0.0 2.3e-23 82.9 0.0 2.0 2 0 0 2 2 2 1 Fic/DOC family Fic_N PF13784.6 gi|134045666|ref|YP_001097152.1| - 7.9e-19 67.5 0.1 1.6e-18 66.5 0.1 1.5 1 0 0 1 1 1 1 Fic/DOC family N-terminal DUF2089 PF09862.9 gi|134045666|ref|YP_001097152.1| - 0.004 17.2 0.3 0.008 16.2 0.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Dimerisation2 PF16864.5 gi|134045666|ref|YP_001097152.1| - 0.0049 16.8 0.0 0.0096 15.9 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain DBD_HTH PF18430.1 gi|134045666|ref|YP_001097152.1| - 0.13 12.0 0.4 0.33 10.7 0.4 1.6 1 0 0 1 1 1 0 Putative DNA-binding domain Polbeta PF18765.1 gi|134045667|ref|YP_001097153.1| - 1.3e-18 66.8 3.2 1.5e-18 66.7 3.2 1.0 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|134045667|ref|YP_001097153.1| - 5.4e-17 61.9 2.4 6.3e-17 61.6 2.4 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.6 gi|134045667|ref|YP_001097153.1| - 0.027 14.7 0.1 0.031 14.5 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm Polbeta PF18765.1 gi|134045668|ref|YP_001097154.1| - 4e-14 52.5 2.8 5.2e-14 52.1 2.8 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|134045668|ref|YP_001097154.1| - 2.1e-13 50.3 1.6 2.3e-13 50.2 1.6 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.6 gi|134045668|ref|YP_001097154.1| - 0.0024 18.1 0.1 0.0034 17.6 0.1 1.4 1 1 0 1 1 1 1 DNA polymerase beta palm PadR PF03551.14 gi|134045669|ref|YP_001097155.1| - 7.8e-05 22.6 1.0 0.00036 20.4 1.0 2.3 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|134045669|ref|YP_001097155.1| - 0.0022 18.1 3.5 0.0023 18.1 0.2 2.4 2 1 1 3 3 3 1 Winged helix DNA-binding domain DUF2540 PF10802.8 gi|134045670|ref|YP_001097156.1| - 2.1e-27 95.0 0.8 2.6e-27 94.7 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2540) DUF2958 PF11171.8 gi|134045670|ref|YP_001097156.1| - 0.17 12.2 0.0 0.3 11.4 0.0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2958) Phage_integrase PF00589.22 gi|134045671|ref|YP_001097157.1| - 4e-25 88.6 0.0 5.9e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|134045671|ref|YP_001097157.1| - 5.4e-05 23.6 4.4 0.00016 22.0 0.2 2.7 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain zf-C2HC_2 PF13913.6 gi|134045672|ref|YP_001097158.1| - 0.15 12.0 0.1 2 8.4 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DUF262 PF03235.14 gi|134045673|ref|YP_001097159.1| - 3.2e-06 27.5 0.2 6.3e-06 26.5 0.2 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF262 Phage_integrase PF00589.22 gi|134045674|ref|YP_001097160.1| - 8.9e-30 103.7 0.0 1.4e-29 103.1 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|134045674|ref|YP_001097160.1| - 7.6e-10 39.1 0.5 7.6e-10 39.1 0.5 1.7 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|134045674|ref|YP_001097160.1| - 0.0044 17.3 1.6 0.0044 17.3 1.6 2.6 2 1 0 3 3 3 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|134045674|ref|YP_001097160.1| - 0.0078 16.5 0.3 0.25 11.7 0.2 2.6 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.22 gi|134045675|ref|YP_001097161.1| - 5.6e-36 123.9 2.7 3.9e-33 114.7 0.0 2.4 1 1 1 2 2 2 2 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|134045675|ref|YP_001097161.1| - 2.6e-10 40.6 4.5 2.6e-10 40.6 4.5 2.3 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|134045675|ref|YP_001097161.1| - 0.083 13.2 0.9 0.56 10.5 0.3 2.4 1 1 2 3 3 3 0 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|134045675|ref|YP_001097161.1| - 0.6 10.5 11.6 0.33 11.3 1.2 3.8 2 1 1 3 3 3 0 Phage integrase SAM-like domain DUF4263 PF14082.6 gi|134045677|ref|YP_001097163.1| - 0.0022 18.3 0.6 0.0074 16.6 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4263) RAMA PF18755.1 gi|134045677|ref|YP_001097163.1| - 0.0041 17.5 0.4 0.021 15.3 0.4 2.1 1 1 0 1 1 1 1 Restriction Enzyme Adenine Methylase Associated NucS PF01939.16 gi|134045677|ref|YP_001097163.1| - 0.015 14.7 0.2 0.025 13.9 0.2 1.3 1 0 0 1 1 1 0 Endonuclease NucS HSDR_N PF04313.14 gi|134045677|ref|YP_001097163.1| - 0.037 14.0 0.4 0.073 13.0 0.4 1.5 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) EVE PF01878.18 gi|134045678|ref|YP_001097164.1| - 1.9e-19 70.1 0.1 2.1e-19 70.0 0.1 1.0 1 0 0 1 1 1 1 EVE domain Dev_Cell_Death PF10539.9 gi|134045678|ref|YP_001097164.1| - 0.0057 16.5 0.0 0.03 14.2 0.0 2.0 1 1 0 1 1 1 1 Development and cell death domain GrpE PF01025.19 gi|134045679|ref|YP_001097165.1| - 0.053 13.2 0.0 0.058 13.1 0.0 1.1 1 0 0 1 1 1 0 GrpE SWI2_SNF2 PF18766.1 gi|134045680|ref|YP_001097166.1| - 2.2e-26 92.9 5.1 1.7e-25 90.0 3.4 2.9 2 1 0 2 2 2 1 SWI2/SNF2 ATPase ResIII PF04851.15 gi|134045680|ref|YP_001097166.1| - 3.6e-15 56.4 2.0 3.6e-15 56.4 2.0 3.3 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit HSDR_N PF04313.14 gi|134045680|ref|YP_001097166.1| - 4.8e-12 46.2 3.2 5e-12 46.2 0.9 2.3 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DEAD PF00270.29 gi|134045680|ref|YP_001097166.1| - 5.3e-11 42.6 0.8 5e-06 26.4 0.5 3.7 3 1 0 3 3 3 2 DEAD/DEAH box helicase Methylase_S PF01420.19 gi|134045681|ref|YP_001097167.1| - 2.6e-21 76.6 4.4 4.8e-11 43.2 0.8 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain N6_Mtase PF02384.16 gi|134045682|ref|YP_001097168.1| - 2.7e-58 197.7 0.1 4.2e-58 197.1 0.1 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|134045682|ref|YP_001097168.1| - 1e-20 74.7 0.0 2.5e-20 73.5 0.0 1.6 1 0 0 1 1 1 1 HsdM N-terminal domain Eco57I PF07669.11 gi|134045682|ref|YP_001097168.1| - 0.04 14.4 0.0 0.12 12.9 0.0 1.8 1 1 0 1 1 1 0 Eco57I restriction-modification methylase NCBP3 PF10309.9 gi|134045682|ref|YP_001097168.1| - 0.043 13.7 0.1 2.3 8.2 0.1 2.6 2 0 0 2 2 2 0 Nuclear cap-binding protein subunit 3 TaqI_C PF12950.7 gi|134045683|ref|YP_001097169.1| - 0.0049 16.9 0.4 0.0081 16.2 0.4 1.5 1 1 0 1 1 1 1 TaqI-like C-terminal specificity domain FumaraseC_C PF10415.9 gi|134045683|ref|YP_001097169.1| - 0.019 15.4 1.1 30 5.1 0.1 3.9 4 1 0 4 4 4 0 Fumarase C C-terminus MCM PF00493.23 gi|134045684|ref|YP_001097170.1| - 6.1e-61 205.4 0.1 9.7e-61 204.7 0.1 1.3 1 0 0 1 1 1 1 MCM P-loop domain MCM_lid PF17855.1 gi|134045684|ref|YP_001097170.1| - 1.2e-15 57.7 0.2 2.2e-15 56.8 0.2 1.5 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_OB PF17207.3 gi|134045684|ref|YP_001097170.1| - 4.9e-11 42.6 0.4 1.4e-10 41.1 0.2 1.8 2 0 0 2 2 2 1 MCM OB domain Mg_chelatase PF01078.21 gi|134045684|ref|YP_001097170.1| - 6.6e-08 32.2 1.0 2.3e-06 27.2 0.0 2.8 3 1 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|134045684|ref|YP_001097170.1| - 6.5e-06 26.2 0.1 8.3e-05 22.6 0.0 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|134045684|ref|YP_001097170.1| - 0.0025 17.7 0.0 0.014 15.2 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|134045684|ref|YP_001097170.1| - 0.0072 16.0 0.0 1.1 9.0 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.6 gi|134045684|ref|YP_001097170.1| - 0.021 15.4 1.6 3.8 8.1 0.2 3.4 3 1 0 3 3 3 0 AAA domain AAA_22 PF13401.6 gi|134045684|ref|YP_001097170.1| - 0.071 13.4 0.7 1.8 8.8 0.2 2.9 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|134045684|ref|YP_001097170.1| - 0.071 13.5 1.0 0.57 10.5 0.5 2.6 2 1 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.6 gi|134045684|ref|YP_001097170.1| - 0.14 12.5 0.4 4.4 7.6 0.0 2.6 2 1 0 2 2 2 0 AAA domain TfuA PF07812.12 gi|134045685|ref|YP_001097171.1| - 0.18 11.5 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 TfuA-like protein PC4 PF02229.16 gi|134045686|ref|YP_001097172.1| - 4e-12 45.6 0.1 4.6e-12 45.4 0.1 1.1 1 0 0 1 1 1 1 Transcriptional Coactivator p15 (PC4) FrhB_FdhB_C PF04432.13 gi|134045687|ref|YP_001097173.1| - 2e-46 157.6 0.0 3.2e-46 157.0 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|134045687|ref|YP_001097173.1| - 2.5e-26 91.6 0.2 5.3e-26 90.6 0.2 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term NMT1_2 PF13379.6 gi|134045687|ref|YP_001097173.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 NMT1-like family NgoMIV_restric PF09015.10 gi|134045687|ref|YP_001097173.1| - 0.15 11.1 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 NgoMIV restriction enzyme Oxidored_q6 PF01058.22 gi|134045688|ref|YP_001097174.1| - 1.3e-30 105.9 0.1 1.3e-30 105.9 0.1 2.0 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|134045688|ref|YP_001097174.1| - 1.2e-10 40.7 16.3 2.6e-07 30.2 2.5 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134045688|ref|YP_001097174.1| - 8.9e-08 32.1 11.3 5.3e-07 29.7 8.9 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045688|ref|YP_001097174.1| - 9.7e-08 32.0 10.2 9.7e-08 32.0 10.2 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045688|ref|YP_001097174.1| - 1.1e-06 29.1 12.1 1.9e-05 25.2 11.1 2.7 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045688|ref|YP_001097174.1| - 0.00011 22.3 11.4 0.00011 22.3 11.4 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134045688|ref|YP_001097174.1| - 0.00096 19.1 14.4 0.0013 18.8 2.6 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134045688|ref|YP_001097174.1| - 0.0062 16.6 2.6 0.0062 16.6 2.6 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|134045688|ref|YP_001097174.1| - 0.026 15.3 1.3 0.026 15.3 1.3 3.4 3 1 1 4 4 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|134045688|ref|YP_001097174.1| - 0.03 14.7 15.0 0.15 12.5 1.3 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045688|ref|YP_001097174.1| - 0.5 11.3 16.1 0.2 12.6 1.8 2.9 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|134045688|ref|YP_001097174.1| - 0.83 10.3 19.4 0.3 11.7 3.6 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|134045688|ref|YP_001097174.1| - 5.8 7.8 17.9 2.7 8.9 5.9 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045688|ref|YP_001097174.1| - 6.8 7.3 21.5 0.52 10.9 2.6 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|134045688|ref|YP_001097174.1| - 8.4 7.0 20.6 0.87 10.2 1.3 3.4 5 0 0 5 5 4 0 4Fe-4S single cluster domain of Ferredoxin I HycI PF01750.18 gi|134045689|ref|YP_001097175.1| - 1.6e-26 92.7 0.7 2.1e-26 92.3 0.7 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease Methyltransf_31 PF13847.6 gi|134045689|ref|YP_001097175.1| - 0.09 12.6 0.1 0.19 11.5 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain NiFeSe_Hases PF00374.19 gi|134045690|ref|YP_001097176.1| - 9.4e-32 110.6 9.4 4.6e-16 58.8 0.0 5.0 1 1 3 5 5 5 5 Nickel-dependent hydrogenase FlpD PF02662.16 gi|134045691|ref|YP_001097177.1| - 1.2e-52 177.0 0.0 1.4e-52 176.9 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Oxidored_q6 PF01058.22 gi|134045692|ref|YP_001097178.1| - 1.4e-35 122.0 0.1 2.3e-35 121.3 0.1 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.19 gi|134045693|ref|YP_001097179.1| - 5.8e-40 137.6 0.4 3.3e-24 85.6 0.0 3.1 1 1 0 3 3 3 3 Nickel-dependent hydrogenase Fer4 PF00037.27 gi|134045694|ref|YP_001097180.1| - 4.8e-61 200.3 126.1 3.2e-07 29.9 4.9 12.1 12 0 0 12 12 12 12 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134045694|ref|YP_001097180.1| - 9.8e-51 170.1 90.3 1.2e-10 41.8 9.1 7.2 7 0 0 7 7 7 6 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045694|ref|YP_001097180.1| - 2.6e-39 133.1 96.9 3.9e-08 33.3 8.0 8.5 3 1 7 10 10 10 10 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045694|ref|YP_001097180.1| - 2.2e-37 126.9 108.6 1e-07 32.0 9.0 8.4 3 3 6 9 9 9 9 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134045694|ref|YP_001097180.1| - 1.6e-36 122.8 126.7 2.8e-06 27.1 1.1 12.2 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_16 PF13484.6 gi|134045694|ref|YP_001097180.1| - 1e-34 119.2 97.9 0.00078 20.3 0.6 12.1 9 2 4 13 13 13 12 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|134045694|ref|YP_001097180.1| - 8.9e-32 107.2 113.0 0.00036 20.4 2.0 12.2 12 0 0 12 12 12 12 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134045694|ref|YP_001097180.1| - 4.6e-31 106.7 96.6 1.9e-07 31.1 9.8 8.4 5 3 3 8 8 8 8 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134045694|ref|YP_001097180.1| - 1e-21 77.1 98.2 6.4e-06 26.5 8.3 9.1 7 3 1 8 8 8 7 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045694|ref|YP_001097180.1| - 6.1e-19 68.3 106.3 2.5e-05 24.7 7.0 10.7 5 3 6 11 11 11 10 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134045694|ref|YP_001097180.1| - 3.1e-16 58.5 117.5 0.0011 19.3 3.1 12.1 12 0 0 12 12 12 9 4Fe-4S binding domain Fer4_3 PF12798.7 gi|134045694|ref|YP_001097180.1| - 5.2e-13 48.9 146.6 0.0028 18.5 5.9 12.3 12 0 0 12 12 12 8 4Fe-4S binding domain Fer4_18 PF13746.6 gi|134045694|ref|YP_001097180.1| - 7.5e-09 35.8 94.0 0.00064 19.9 9.0 8.0 2 2 6 8 8 8 5 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|134045694|ref|YP_001097180.1| - 2.3e-05 25.1 91.9 0.051 14.4 1.0 12.0 10 2 2 13 13 13 5 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134045694|ref|YP_001097180.1| - 0.0016 19.2 96.3 0.19 12.5 0.4 12.7 10 3 1 11 11 11 4 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|134045694|ref|YP_001097180.1| - 0.0048 17.4 114.7 0.065 13.8 2.8 12.3 11 1 1 12 12 12 5 4Fe-4S single cluster domain of Ferredoxin I Telethonin PF09470.10 gi|134045694|ref|YP_001097180.1| - 0.062 13.2 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Telethonin protein Fer4 PF00037.27 gi|134045695|ref|YP_001097181.1| - 8.6e-21 72.9 43.5 2.9e-06 26.9 2.9 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain Pyr_redox_2 PF07992.14 gi|134045695|ref|YP_001097181.1| - 1.2e-20 74.0 0.0 8.1e-20 71.2 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|134045695|ref|YP_001097181.1| - 2.5e-16 60.0 34.1 4.9e-08 33.4 10.4 4.5 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045695|ref|YP_001097181.1| - 2.2e-15 56.5 29.2 1.3e-08 34.9 6.4 3.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045695|ref|YP_001097181.1| - 7.8e-15 55.6 19.9 0.0032 18.3 0.3 5.5 5 0 0 5 5 5 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|134045695|ref|YP_001097181.1| - 8.2e-15 54.7 32.5 4.9e-08 33.0 7.2 4.7 5 0 0 5 5 5 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045695|ref|YP_001097181.1| - 3.9e-14 52.5 28.1 3.8e-06 26.9 10.5 4.5 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134045695|ref|YP_001097181.1| - 1.3e-13 50.4 48.0 7.6e-05 22.6 3.2 5.5 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134045695|ref|YP_001097181.1| - 2.6e-10 39.8 46.6 0.00034 20.5 2.2 5.6 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|134045695|ref|YP_001097181.1| - 5.6e-07 29.9 30.0 0.0033 17.8 1.0 5.1 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134045695|ref|YP_001097181.1| - 9.9e-07 29.4 21.1 0.002 18.8 0.4 4.8 3 1 1 4 4 4 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|134045695|ref|YP_001097181.1| - 2.6e-06 28.2 22.5 0.029 15.2 0.2 4.7 3 1 1 4 4 4 3 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|134045695|ref|YP_001097181.1| - 8.6e-06 25.1 1.5 1.3e-05 24.5 1.5 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|134045695|ref|YP_001097181.1| - 4.1e-05 23.7 0.0 8.7e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|134045695|ref|YP_001097181.1| - 5.6e-05 22.7 1.1 9.4e-05 21.9 1.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_17 PF13534.6 gi|134045695|ref|YP_001097181.1| - 0.00012 22.5 36.2 0.017 15.7 11.2 5.2 3 2 4 7 7 7 4 4Fe-4S dicluster domain DAO PF01266.24 gi|134045695|ref|YP_001097181.1| - 0.00018 21.2 0.3 0.081 12.5 1.4 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer4_4 PF12800.7 gi|134045695|ref|YP_001097181.1| - 0.00029 21.1 44.0 0.0015 18.9 1.3 5.4 5 0 0 5 5 4 3 4Fe-4S binding domain GIDA PF01134.22 gi|134045695|ref|YP_001097181.1| - 0.0003 20.0 0.7 0.0061 15.7 0.2 2.4 2 0 0 2 2 2 1 Glucose inhibited division protein A Fer4_13 PF13370.6 gi|134045695|ref|YP_001097181.1| - 0.00056 20.4 26.4 0.093 13.3 1.5 4.9 4 0 0 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I HI0933_like PF03486.14 gi|134045695|ref|YP_001097181.1| - 0.0012 17.7 1.6 0.0048 15.6 1.0 1.9 1 1 1 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|134045695|ref|YP_001097181.1| - 0.0018 17.6 0.6 0.017 14.4 0.4 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|134045695|ref|YP_001097181.1| - 0.0045 16.3 0.1 0.0071 15.7 0.1 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 gi|134045695|ref|YP_001097181.1| - 0.0054 16.0 0.0 0.055 12.8 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|134045695|ref|YP_001097181.1| - 0.023 15.2 0.1 0.11 13.0 0.3 2.1 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|134045695|ref|YP_001097181.1| - 0.039 13.2 0.0 0.083 12.1 0.0 1.5 1 0 0 1 1 1 0 Thi4 family FAD_binding_3 PF01494.19 gi|134045695|ref|YP_001097181.1| - 0.057 12.7 0.5 0.086 12.1 0.5 1.2 1 0 0 1 1 1 0 FAD binding domain DUF1847 PF08901.11 gi|134045696|ref|YP_001097182.1| - 2.1e-64 215.9 1.9 3.1e-64 215.3 1.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1847) Pyridox_ox_2 PF12900.7 gi|134045697|ref|YP_001097183.1| - 1.3e-19 70.6 0.0 1.5e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|134045697|ref|YP_001097183.1| - 0.0031 17.7 0.0 0.0044 17.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|134045697|ref|YP_001097183.1| - 0.034 13.7 0.0 0.056 13.0 0.0 1.3 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like DUF4875 PF16175.5 gi|134045697|ref|YP_001097183.1| - 0.055 13.6 0.0 0.082 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4875) Fer4_NifH PF00142.18 gi|134045698|ref|YP_001097184.1| - 1.8e-128 427.7 4.1 2e-128 427.5 4.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|134045698|ref|YP_001097184.1| - 1.4e-08 34.9 0.0 2.1e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|134045698|ref|YP_001097184.1| - 1.3e-05 25.2 0.1 1.3e-05 25.2 0.1 2.2 3 0 0 3 3 3 1 AAA domain ParA PF10609.9 gi|134045698|ref|YP_001097184.1| - 0.00024 20.6 1.6 0.002 17.7 1.6 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase RNA_helicase PF00910.22 gi|134045698|ref|YP_001097184.1| - 0.0021 18.4 0.4 0.052 14.0 0.0 2.3 2 0 0 2 2 2 1 RNA helicase ArsA_ATPase PF02374.15 gi|134045698|ref|YP_001097184.1| - 0.0089 15.2 0.1 0.024 13.9 0.1 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|134045698|ref|YP_001097184.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|134045698|ref|YP_001097184.1| - 0.17 11.4 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain P-II PF00543.22 gi|134045699|ref|YP_001097185.1| - 2.7e-32 111.4 1.1 3.1e-32 111.2 1.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|134045699|ref|YP_001097185.1| - 0.0014 18.8 0.7 0.029 14.6 0.3 2.4 1 1 1 2 2 2 1 Cyclic-di-AMP receptor P-II PF00543.22 gi|134045700|ref|YP_001097186.1| - 5.5e-32 110.4 0.1 7.9e-32 109.9 0.1 1.2 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.19 gi|134045701|ref|YP_001097187.1| - 1.4e-118 396.2 0.0 1.6e-118 396.0 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|134045702|ref|YP_001097188.1| - 1.3e-119 399.6 0.0 1.4e-119 399.4 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase ThiF PF00899.21 gi|134045702|ref|YP_001097188.1| - 0.0071 15.7 0.1 0.025 14.0 0.0 1.9 2 0 0 2 2 2 1 ThiF family Oxidored_nitro PF00148.19 gi|134045703|ref|YP_001097189.1| - 5.5e-121 404.0 0.2 6.4e-121 403.8 0.2 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|134045704|ref|YP_001097190.1| - 1.7e-130 435.3 0.1 2e-130 435.2 0.1 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Nitro_FeMo-Co PF02579.17 gi|134045705|ref|YP_001097191.1| - 6e-19 68.2 0.0 6.8e-19 68.0 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor AnfO_nitrog PF09582.10 gi|134045705|ref|YP_001097191.1| - 0.00072 18.9 0.0 0.0008 18.8 0.0 1.2 1 0 0 1 1 1 1 Iron only nitrogenase protein AnfO (AnfO_nitrog) LAM_C PF12544.8 gi|134045706|ref|YP_001097192.1| - 7.3e-41 139.3 0.0 1.9e-40 137.9 0.0 1.7 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Radical_SAM PF04055.21 gi|134045706|ref|YP_001097192.1| - 6.2e-11 43.0 1.0 2.1e-10 41.2 0.0 2.3 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|134045706|ref|YP_001097192.1| - 1.9e-08 34.4 4.2 2.8e-06 27.4 0.0 3.6 4 0 0 4 4 4 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|134045706|ref|YP_001097192.1| - 1.1e-07 32.2 0.1 2.5e-06 27.8 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3996 PF13161.6 gi|134045706|ref|YP_001097192.1| - 0.012 15.4 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3996) Acetyltransf_10 PF13673.7 gi|134045707|ref|YP_001097193.1| - 2.2e-08 34.1 0.2 2.1e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|134045707|ref|YP_001097193.1| - 1.4e-07 31.7 0.0 2.8e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|134045707|ref|YP_001097193.1| - 2e-05 24.7 0.1 3.5e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|134045707|ref|YP_001097193.1| - 8.3e-05 22.9 0.1 0.0003 21.2 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|134045707|ref|YP_001097193.1| - 0.00072 19.3 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_4 PF13420.7 gi|134045707|ref|YP_001097193.1| - 0.0072 16.5 7.9 0.039 14.1 3.7 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.10 gi|134045707|ref|YP_001097193.1| - 0.047 13.9 0.1 0.15 12.3 0.1 1.8 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region MSG PF02349.15 gi|134045707|ref|YP_001097193.1| - 0.069 13.3 3.9 4.6 7.5 0.8 2.5 2 0 0 2 2 2 0 Major surface glycoprotein Filamin PF00630.19 gi|134045707|ref|YP_001097193.1| - 0.11 13.3 0.1 0.26 12.1 0.1 1.6 1 1 0 1 1 1 0 Filamin/ABP280 repeat CBS PF00571.28 gi|134045708|ref|YP_001097194.1| - 6.7e-17 61.7 1.3 1.8e-07 31.5 0.0 2.2 2 0 0 2 2 2 2 CBS domain Baculo_19 PF04798.12 gi|134045708|ref|YP_001097194.1| - 0.019 14.7 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 Baculovirus 19 kDa protein conserved region Acetyltransf_1 PF00583.25 gi|134045708|ref|YP_001097194.1| - 0.12 12.6 0.0 0.75 10.1 0.0 1.9 1 1 0 2 2 2 0 Acetyltransferase (GNAT) family Na_H_Exchanger PF00999.21 gi|134045709|ref|YP_001097195.1| - 1.3e-51 175.6 46.8 1.6e-51 175.3 46.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Aminotran_3 PF00202.21 gi|134045710|ref|YP_001097196.1| - 7.3e-96 321.3 0.0 9.1e-96 321.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III OpuAC PF04069.12 gi|134045711|ref|YP_001097197.1| - 2.8e-69 233.6 0.3 3.2e-69 233.4 0.3 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.22 gi|134045712|ref|YP_001097198.1| - 3.4e-24 85.6 12.9 3.4e-24 85.6 12.9 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|134045713|ref|YP_001097199.1| - 8.4e-34 117.0 0.1 2.1e-33 115.7 0.1 1.7 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|134045713|ref|YP_001097199.1| - 4.2e-07 30.1 0.3 0.015 15.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CBS PF00571.28 gi|134045713|ref|YP_001097199.1| - 9e-05 22.8 0.1 1 9.8 0.0 3.2 4 0 0 4 4 3 2 CBS domain AAA_29 PF13555.6 gi|134045713|ref|YP_001097199.1| - 0.00014 21.5 0.0 0.00028 20.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|134045713|ref|YP_001097199.1| - 0.00023 21.1 0.0 0.00071 19.5 0.0 1.8 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|134045713|ref|YP_001097199.1| - 0.00037 20.9 0.0 0.00064 20.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|134045713|ref|YP_001097199.1| - 0.00049 19.0 0.1 0.5 9.1 0.1 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class ATPase_2 PF01637.18 gi|134045713|ref|YP_001097199.1| - 0.002 18.1 5.5 0.023 14.6 4.7 2.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|134045713|ref|YP_001097199.1| - 0.0024 18.4 5.6 0.0051 17.3 5.4 2.1 1 1 0 1 1 1 1 AAA domain Ribosomal_S17 PF00366.20 gi|134045713|ref|YP_001097199.1| - 0.0024 17.9 0.4 0.27 11.3 0.0 2.7 2 0 0 2 2 2 1 Ribosomal protein S17 AAA_PrkA PF08298.11 gi|134045713|ref|YP_001097199.1| - 0.0063 15.5 0.6 0.049 12.5 0.2 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_22 PF13401.6 gi|134045713|ref|YP_001097199.1| - 0.016 15.5 0.3 0.052 13.8 0.3 2.0 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|134045713|ref|YP_001097199.1| - 0.039 13.4 0.4 3.7 6.9 0.0 2.4 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|134045713|ref|YP_001097199.1| - 0.04 14.5 0.0 0.1 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|134045713|ref|YP_001097199.1| - 0.11 12.3 0.2 2.5 7.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|134045713|ref|YP_001097199.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain TPR_1 PF00515.28 gi|134045714|ref|YP_001097200.1| - 1.4e-13 50.0 0.4 2.4e-13 49.3 0.4 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|134045714|ref|YP_001097200.1| - 6.9e-10 38.3 0.2 1.2e-09 37.5 0.2 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|134045714|ref|YP_001097200.1| - 3.8e-09 36.1 0.2 1e-06 28.3 0.2 2.1 1 1 1 2 2 2 2 TPR repeat TPR_8 PF13181.6 gi|134045714|ref|YP_001097200.1| - 3.9e-08 32.9 0.6 6.3e-08 32.2 0.1 1.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|134045714|ref|YP_001097200.1| - 2e-06 28.0 0.0 2.4e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|134045714|ref|YP_001097200.1| - 6e-06 25.9 0.0 8.3e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|134045714|ref|YP_001097200.1| - 0.0004 20.6 0.3 0.043 14.2 0.0 2.6 2 1 0 2 2 2 1 Tetratricopeptide repeat XS PF03468.14 gi|134045714|ref|YP_001097200.1| - 0.0018 18.5 0.3 0.0021 18.4 0.3 1.1 1 0 0 1 1 1 1 XS domain Fis1_TPR_C PF14853.6 gi|134045714|ref|YP_001097200.1| - 0.011 15.8 0.1 0.013 15.5 0.1 1.2 1 0 0 1 1 1 0 Fis1 C-terminal tetratricopeptide repeat TPR_19 PF14559.6 gi|134045714|ref|YP_001097200.1| - 0.016 15.7 0.0 0.019 15.5 0.0 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|134045714|ref|YP_001097200.1| - 0.027 15.1 0.0 0.035 14.7 0.0 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|134045714|ref|YP_001097200.1| - 0.032 15.0 0.0 0.043 14.6 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|134045714|ref|YP_001097200.1| - 0.035 14.0 0.1 0.064 13.2 0.1 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat MIT PF04212.18 gi|134045714|ref|YP_001097200.1| - 0.07 13.2 0.1 0.092 12.8 0.1 1.3 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain TPR_9 PF13371.6 gi|134045714|ref|YP_001097200.1| - 0.19 11.9 0.0 0.2 11.8 0.0 1.1 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|134045715|ref|YP_001097201.1| - 1.2e-71 233.8 40.9 5.7e-11 41.8 0.4 9.1 9 0 0 9 9 9 9 Tetratricopeptide repeat TPR_2 PF07719.17 gi|134045715|ref|YP_001097201.1| - 8.4e-63 203.5 30.6 3.6e-09 36.0 0.2 9.1 9 0 0 9 9 9 8 Tetratricopeptide repeat TPR_8 PF13181.6 gi|134045715|ref|YP_001097201.1| - 5.6e-50 163.4 38.6 2.2e-07 30.5 0.9 9.2 9 0 0 9 9 9 9 Tetratricopeptide repeat TPR_11 PF13414.6 gi|134045715|ref|YP_001097201.1| - 1.7e-45 152.4 39.6 7.1e-09 35.2 2.5 9.0 5 2 4 9 9 9 7 TPR repeat TPR_12 PF13424.6 gi|134045715|ref|YP_001097201.1| - 4.1e-37 126.3 23.1 8.6e-07 29.2 1.6 8.0 3 3 3 6 6 6 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|134045715|ref|YP_001097201.1| - 1.4e-36 124.8 0.0 6.8e-09 36.2 0.0 5.2 3 2 1 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|134045715|ref|YP_001097201.1| - 4.6e-34 114.3 23.7 7.7e-06 25.9 0.4 8.5 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_14 PF13428.6 gi|134045715|ref|YP_001097201.1| - 1.6e-30 103.1 1.0 0.0034 18.1 0.0 8.4 3 3 6 9 9 8 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|134045715|ref|YP_001097201.1| - 3.3e-30 104.4 17.6 4.4e-07 30.3 0.1 5.2 1 1 5 7 7 7 7 Tetratricopeptide repeat TPR_9 PF13371.6 gi|134045715|ref|YP_001097201.1| - 1.3e-24 86.1 0.3 1.8e-06 28.0 0.0 5.2 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|134045715|ref|YP_001097201.1| - 6.4e-24 82.2 24.9 0.00088 19.1 0.1 8.9 8 1 1 9 9 9 6 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|134045715|ref|YP_001097201.1| - 3.3e-20 72.1 25.1 1.3e-07 31.8 2.6 4.7 2 2 2 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|134045715|ref|YP_001097201.1| - 1.3e-17 63.0 20.9 0.024 14.5 0.1 8.0 9 0 0 9 9 8 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|134045715|ref|YP_001097201.1| - 1.5e-13 50.4 11.8 0.034 14.8 0.1 8.1 9 0 0 9 9 8 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|134045715|ref|YP_001097201.1| - 4e-11 43.2 7.7 0.21 11.7 0.3 7.3 2 2 4 6 6 6 2 Domain of Unknown Function (DUF3856) TPR_3 PF07720.12 gi|134045715|ref|YP_001097201.1| - 1e-10 41.4 27.4 0.034 14.1 1.3 7.6 8 1 0 8 8 8 3 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|134045715|ref|YP_001097201.1| - 2.1e-09 37.4 18.7 0.00053 20.0 4.8 4.3 1 1 3 4 4 4 3 Putative TPR-like repeat MIT PF04212.18 gi|134045715|ref|YP_001097201.1| - 2.4e-08 33.9 28.8 0.037 14.1 0.6 7.7 5 2 2 7 7 7 3 MIT (microtubule interacting and transport) domain NRBF2_MIT PF17169.4 gi|134045715|ref|YP_001097201.1| - 1.9e-07 31.2 11.8 7.6 6.8 0.0 6.7 2 2 5 7 7 7 0 MIT domain of nuclear receptor-binding factor 2 Rapsyn_N PF10579.9 gi|134045715|ref|YP_001097201.1| - 5.3e-07 29.6 0.3 0.0052 16.9 0.0 4.4 3 2 1 4 4 4 1 Rapsyn N-terminal myristoylation and linker region SHNi-TPR PF10516.9 gi|134045715|ref|YP_001097201.1| - 1.4e-06 27.6 21.4 0.61 9.6 0.1 7.8 9 0 0 9 9 9 2 SHNi-TPR TPR_15 PF13429.6 gi|134045715|ref|YP_001097201.1| - 9.4e-06 25.0 0.3 0.022 13.9 0.1 2.3 1 1 0 2 2 2 2 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|134045715|ref|YP_001097201.1| - 5.3e-05 22.8 4.4 0.012 15.0 0.2 2.8 2 2 1 3 3 3 2 Coatomer epsilon subunit NARP1 PF12569.8 gi|134045715|ref|YP_001097201.1| - 0.00034 19.7 14.2 0.15 11.0 1.0 4.6 1 1 3 4 4 4 2 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|134045715|ref|YP_001097201.1| - 0.00072 19.6 22.7 1.5 8.9 0.3 6.8 6 1 1 7 7 7 2 Fis1 C-terminal tetratricopeptide repeat TPR_21 PF09976.9 gi|134045715|ref|YP_001097201.1| - 0.0017 18.1 2.8 12 5.6 0.0 4.3 1 1 2 4 4 4 0 Tetratricopeptide repeat-like domain BTAD PF03704.17 gi|134045715|ref|YP_001097201.1| - 0.002 18.6 2.6 7.8 6.9 0.4 4.5 2 1 2 4 4 4 0 Bacterial transcriptional activator domain DUF1828 PF08861.10 gi|134045715|ref|YP_001097201.1| - 0.0076 16.5 0.2 0.048 13.9 0.1 2.4 1 1 1 2 2 1 1 Domain of unknown function DUF1828 HTH_Bact PF18768.1 gi|134045715|ref|YP_001097201.1| - 0.033 13.8 11.9 19 4.9 0.2 7.0 7 1 0 7 7 7 0 Helix-turn-helix bacterial domain TPR_MalT PF17874.1 gi|134045715|ref|YP_001097201.1| - 0.2 11.0 0.0 10 5.4 0.0 2.9 1 1 3 4 4 4 0 MalT-like TPR region SNAP PF14938.6 gi|134045715|ref|YP_001097201.1| - 0.21 11.0 19.4 4.7 6.6 4.1 5.1 1 1 3 5 5 5 0 Soluble NSF attachment protein, SNAP NSF PF02071.20 gi|134045715|ref|YP_001097201.1| - 1.3 10.1 23.9 16 6.8 0.3 7.2 7 0 0 7 7 6 0 Aromatic-di-Alanine (AdAR) repeat SPO22 PF08631.10 gi|134045715|ref|YP_001097201.1| - 1.6 8.2 16.4 17 4.8 0.0 5.4 4 1 1 5 5 5 0 Meiosis protein SPO22/ZIP4 like SGTA_dimer PF16546.5 gi|134045715|ref|YP_001097201.1| - 2.4 8.0 6.1 2.5 7.9 0.1 3.5 4 1 1 5 5 3 0 Homodimerisation domain of SGTA Strep_SA_rep PF06696.11 gi|134045715|ref|YP_001097201.1| - 3.1 7.9 12.5 1.8e+02 2.3 0.1 6.7 7 0 0 7 7 7 0 Streptococcal surface antigen repeat dCMP_cyt_deam_1 PF00383.23 gi|134045717|ref|YP_001097203.1| - 4e-22 78.0 0.0 5.3e-22 77.6 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|134045717|ref|YP_001097203.1| - 8.1e-21 74.2 0.1 9.5e-21 74.0 0.1 1.0 1 0 0 1 1 1 1 MafB19-like deaminase SNAD4 PF18750.1 gi|134045717|ref|YP_001097203.1| - 4.6e-05 23.5 0.0 0.00039 20.5 0.0 2.1 2 0 0 2 2 2 1 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC2 PF18772.1 gi|134045717|ref|YP_001097203.1| - 0.00083 19.4 0.2 0.013 15.5 0.2 2.0 1 1 0 1 1 1 1 APOBEC2 NAD1 PF18778.1 gi|134045717|ref|YP_001097203.1| - 0.0012 19.0 0.3 0.03 14.4 0.3 2.1 1 1 0 1 1 1 1 Novel AID APOBEC clade 1 APOBEC4_like PF18774.1 gi|134045717|ref|YP_001097203.1| - 0.0035 17.3 0.1 0.037 14.0 0.1 2.0 1 1 0 1 1 1 1 APOBEC4-like -AID/APOBEC-deaminase XOO_2897-deam PF14440.6 gi|134045717|ref|YP_001097203.1| - 0.0098 16.0 0.1 0.017 15.2 0.0 1.5 2 0 0 2 2 2 1 Xanthomonas XOO_2897-like deaminase APOBEC3 PF18771.1 gi|134045717|ref|YP_001097203.1| - 0.011 15.9 0.0 0.02 15.0 0.0 1.4 2 0 0 2 2 2 0 APOBEC3 NAD2 PF18782.1 gi|134045717|ref|YP_001097203.1| - 0.016 15.3 0.1 0.091 12.9 0.1 1.9 1 1 0 1 1 1 0 Novel AID APOBEC clade 2 APOBEC_N PF08210.11 gi|134045717|ref|YP_001097203.1| - 0.034 14.0 0.2 0.17 11.8 0.2 1.8 1 1 0 1 1 1 0 APOBEC-like N-terminal domain Bd3614-deam PF14439.6 gi|134045717|ref|YP_001097203.1| - 0.14 12.3 4.3 0.78 9.8 0.6 2.3 1 1 1 2 2 2 0 Bd3614-like deaminase 2-Hacid_dh_C PF02826.19 gi|134045718|ref|YP_001097204.1| - 9.4e-61 204.3 0.0 7.2e-60 201.4 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|134045718|ref|YP_001097204.1| - 1.2e-26 92.9 0.2 1.4e-26 92.8 0.2 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.12 gi|134045718|ref|YP_001097204.1| - 0.00037 20.1 0.1 0.0017 17.9 0.0 2.0 2 1 1 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|134045718|ref|YP_001097204.1| - 0.00039 20.6 0.2 0.0091 16.2 0.1 2.4 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|134045718|ref|YP_001097204.1| - 0.0017 18.4 3.4 0.0041 17.2 0.4 2.3 2 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MacB_PCD PF12704.7 gi|134045719|ref|YP_001097205.1| - 4.2e-29 102.3 0.4 4.2e-29 102.3 0.4 2.2 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|134045719|ref|YP_001097205.1| - 1.9e-12 47.4 19.2 3.8e-12 46.5 8.4 3.1 3 0 0 3 3 3 2 FtsX-like permease family TMEM237 PF15383.6 gi|134045719|ref|YP_001097205.1| - 0.018 14.1 0.3 0.07 12.2 0.0 1.9 2 0 0 2 2 2 0 Transmembrane protein 237 Porphobil_deam PF01379.20 gi|134045720|ref|YP_001097206.1| - 3.2e-63 212.9 0.0 4e-63 212.6 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|134045720|ref|YP_001097206.1| - 4.5e-11 43.0 0.1 1e-10 41.8 0.1 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain TPR_1 PF00515.28 gi|134045721|ref|YP_001097207.1| - 5.3e-28 95.7 22.9 7.2e-08 31.9 0.0 6.1 7 0 0 7 7 5 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|134045721|ref|YP_001097207.1| - 1.4e-27 93.5 12.2 2.1e-05 24.3 0.0 5.9 6 0 0 6 6 5 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|134045721|ref|YP_001097207.1| - 5.3e-23 80.4 15.4 2e-07 30.6 1.5 4.9 3 1 2 5 5 5 3 TPR repeat TPR_8 PF13181.6 gi|134045721|ref|YP_001097207.1| - 1.6e-22 77.8 20.6 2.2e-05 24.3 0.0 6.9 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|134045721|ref|YP_001097207.1| - 1.4e-20 72.1 9.4 1.3e-05 25.2 0.3 6.0 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|134045721|ref|YP_001097207.1| - 9.1e-18 64.3 4.0 2.1e-06 27.9 1.8 4.5 3 2 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|134045721|ref|YP_001097207.1| - 2.4e-15 56.9 0.0 0.00019 22.0 0.1 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|134045721|ref|YP_001097207.1| - 1e-14 53.8 3.5 0.038 13.9 0.2 5.5 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|134045721|ref|YP_001097207.1| - 3.1e-13 49.3 0.0 0.024 15.4 0.0 5.4 3 1 2 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|134045721|ref|YP_001097207.1| - 5.4e-12 46.1 3.2 0.00062 20.2 0.1 4.0 4 1 1 5 5 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|134045721|ref|YP_001097207.1| - 5.8e-11 41.6 2.4 0.0045 16.9 0.0 5.4 5 0 0 5 5 5 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|134045721|ref|YP_001097207.1| - 7.7e-05 22.8 7.9 0.023 14.9 1.6 3.5 2 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TIR_2 PF13676.6 gi|134045721|ref|YP_001097207.1| - 0.00015 22.3 0.0 0.00047 20.7 0.0 1.9 1 0 0 1 1 1 1 TIR domain TIR PF01582.20 gi|134045721|ref|YP_001097207.1| - 0.0049 16.7 0.5 0.012 15.4 0.5 1.8 1 0 0 1 1 1 1 TIR domain SHNi-TPR PF10516.9 gi|134045721|ref|YP_001097207.1| - 0.008 15.6 2.6 25 4.4 0.1 4.4 4 0 0 4 4 4 0 SHNi-TPR EST1_DNA_bind PF10373.9 gi|134045721|ref|YP_001097207.1| - 0.0086 15.6 5.5 0.011 15.3 0.2 2.6 2 1 0 2 2 2 1 Est1 DNA/RNA binding domain NRBF2_MIT PF17169.4 gi|134045721|ref|YP_001097207.1| - 0.06 13.6 3.7 2.6 8.3 0.0 3.6 4 0 0 4 4 3 0 MIT domain of nuclear receptor-binding factor 2 ANAPC5 PF12862.7 gi|134045721|ref|YP_001097207.1| - 0.068 13.2 0.3 6.1 7.0 0.5 2.9 2 1 0 2 2 2 0 Anaphase-promoting complex subunit 5 TPR_6 PF13174.6 gi|134045721|ref|YP_001097207.1| - 0.088 13.5 4.2 7 7.5 0.0 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat MIT PF04212.18 gi|134045721|ref|YP_001097207.1| - 0.09 12.9 12.5 0.47 10.5 0.0 4.6 4 1 1 5 5 4 0 MIT (microtubule interacting and transport) domain PPR PF01535.20 gi|134045721|ref|YP_001097207.1| - 0.91 9.9 9.3 38 4.9 0.0 4.8 5 0 0 5 5 5 0 PPR repeat GSCFA PF08885.11 gi|134045722|ref|YP_001097208.1| - 0.078 12.6 0.0 0.13 11.9 0.0 1.4 1 1 0 1 1 1 0 GSCFA family S_layer_C PF05124.12 gi|134045723|ref|YP_001097209.1| - 2.3e-64 217.4 11.0 2.3e-64 217.4 11.0 1.8 2 0 0 2 2 2 1 S-layer like family, C-terminal region S_layer_N PF05123.12 gi|134045723|ref|YP_001097209.1| - 2.5e-53 181.8 5.2 2.5e-53 181.8 5.2 2.5 2 1 0 2 2 2 1 S-layer like family, N-terminal region Radical_SAM PF04055.21 gi|134045724|ref|YP_001097210.1| - 5.8e-09 36.5 0.7 9.7e-09 35.8 0.7 1.4 1 0 0 1 1 1 1 Radical SAM superfamily QRPTase_C PF01729.19 gi|134045725|ref|YP_001097211.1| - 1.7e-55 187.4 0.5 2.1e-55 187.0 0.5 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|134045725|ref|YP_001097211.1| - 4.7e-22 77.8 0.0 8.6e-22 77.0 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.19 gi|134045725|ref|YP_001097211.1| - 0.0024 17.3 0.1 0.022 14.1 0.0 2.3 2 0 0 2 2 2 1 Ribulose-phosphate 3 epimerase family IGPS PF00218.21 gi|134045725|ref|YP_001097211.1| - 0.0087 15.3 0.3 0.015 14.5 0.3 1.5 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase RNase_P_Rpp14 PF01900.19 gi|134045726|ref|YP_001097212.1| - 1e-13 51.4 0.1 1.3e-13 51.1 0.1 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family tRNA_bind_4 PF18490.1 gi|134045727|ref|YP_001097213.1| - 1.5e-51 174.4 4.6 2.2e-51 173.8 4.6 1.3 1 0 0 1 1 1 1 tRNA-binding domain tRNA-synt_2b PF00587.25 gi|134045727|ref|YP_001097213.1| - 2.3e-08 34.2 0.0 4.7e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Iso_dh PF00180.20 gi|134045728|ref|YP_001097214.1| - 9.2e-105 350.6 0.0 1.3e-104 350.1 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF2179 PF10035.9 gi|134045729|ref|YP_001097215.1| - 0.37 10.6 2.2 19 5.1 0.1 2.8 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2179) AIRS_C PF02769.22 gi|134045730|ref|YP_001097216.1| - 8.9e-09 35.7 0.0 6.1e-08 33.0 0.0 2.1 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|134045730|ref|YP_001097216.1| - 1.1e-08 35.6 0.1 1.7e-08 35.0 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Cnd1 PF12717.7 gi|134045731|ref|YP_001097217.1| - 5.1e-07 29.9 5.4 1.2e-05 25.5 1.9 2.4 2 0 0 2 2 2 2 non-SMC mitotic condensation complex subunit 1 HEAT_2 PF13646.6 gi|134045731|ref|YP_001097217.1| - 0.092 13.1 0.0 0.28 11.6 0.0 1.9 2 0 0 2 2 2 0 HEAT repeats DUF4156 PF13698.6 gi|134045731|ref|YP_001097217.1| - 0.14 12.5 0.1 6.9 7.1 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4156) UBN_AB PF14075.6 gi|134045731|ref|YP_001097217.1| - 7 6.3 11.4 6.8 6.4 0.8 2.4 1 1 1 2 2 2 0 Ubinuclein conserved middle domain Triabin PF03973.13 gi|134045732|ref|YP_001097218.1| - 0.1 12.5 0.4 0.15 12.0 0.4 1.4 1 0 0 1 1 1 0 Triabin TPR_1 PF00515.28 gi|134045733|ref|YP_001097219.1| - 3.2e-58 191.3 30.9 1.5e-07 30.9 1.0 10.2 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_2 PF07719.17 gi|134045733|ref|YP_001097219.1| - 1.9e-55 180.6 16.4 3.1e-05 23.7 0.0 10.2 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_8 PF13181.6 gi|134045733|ref|YP_001097219.1| - 1.7e-43 143.2 26.4 1.7e-05 24.6 0.0 11.0 11 0 0 11 11 11 10 Tetratricopeptide repeat TPR_11 PF13414.6 gi|134045733|ref|YP_001097219.1| - 6.8e-31 105.7 27.4 7.1e-07 28.8 0.3 9.9 5 3 5 10 10 10 7 TPR repeat TPR_19 PF14559.6 gi|134045733|ref|YP_001097219.1| - 5.1e-30 103.8 0.1 8.6e-06 26.2 0.1 6.8 4 2 2 7 7 7 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|134045733|ref|YP_001097219.1| - 7.9e-29 97.9 20.6 0.0038 17.5 0.0 11.6 12 0 0 12 12 12 6 Tetratricopeptide repeat TPR_12 PF13424.6 gi|134045733|ref|YP_001097219.1| - 8.3e-29 99.7 4.0 8.7e-05 22.7 0.2 8.9 1 1 9 10 10 10 10 Tetratricopeptide repeat TPR_14 PF13428.6 gi|134045733|ref|YP_001097219.1| - 1.1e-27 94.4 0.0 0.02 15.7 0.0 9.5 3 2 7 10 10 9 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|134045733|ref|YP_001097219.1| - 2.7e-26 91.9 0.0 3.5e-05 24.3 0.0 6.1 5 1 1 6 6 6 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|134045733|ref|YP_001097219.1| - 2.9e-21 75.5 10.9 1.1e-06 28.8 0.8 5.6 1 1 6 7 7 7 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|134045733|ref|YP_001097219.1| - 3.8e-21 73.5 2.2 0.059 13.4 0.0 9.1 9 0 0 9 9 9 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|134045733|ref|YP_001097219.1| - 3.5e-19 68.1 11.1 0.032 14.9 0.0 9.8 8 1 1 9 9 9 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|134045733|ref|YP_001097219.1| - 5.6e-18 64.2 0.2 0.3 11.0 0.0 9.7 11 0 0 11 11 10 4 Tetratricopeptide repeat TPR_15 PF13429.6 gi|134045733|ref|YP_001097219.1| - 1e-15 57.8 0.4 3e-05 23.4 0.0 4.1 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|134045733|ref|YP_001097219.1| - 4.9e-11 42.6 0.0 0.14 12.3 0.0 5.2 4 2 0 5 5 5 3 Tetratricopeptide repeat TPR_21 PF09976.9 gi|134045733|ref|YP_001097219.1| - 6.1e-11 42.4 1.5 0.023 14.4 0.0 5.2 1 1 4 6 6 6 4 Tetratricopeptide repeat-like domain Fis1_TPR_C PF14853.6 gi|134045733|ref|YP_001097219.1| - 8.1e-09 35.4 12.2 0.15 12.1 0.4 6.8 6 0 0 6 6 6 2 Fis1 C-terminal tetratricopeptide repeat TPR_3 PF07720.12 gi|134045733|ref|YP_001097219.1| - 1.8e-08 34.2 11.0 0.0033 17.4 0.1 6.5 7 0 0 7 7 7 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|134045733|ref|YP_001097219.1| - 2.8e-08 33.1 11.2 0.0089 15.0 0.3 5.0 2 1 2 5 5 5 4 NMDA receptor-regulated protein 1 ChAPs PF09295.10 gi|134045733|ref|YP_001097219.1| - 7e-08 31.9 2.3 0.0067 15.5 0.1 3.1 1 1 0 3 3 3 2 ChAPs (Chs5p-Arf1p-binding proteins) Coatomer_E PF04733.14 gi|134045733|ref|YP_001097219.1| - 4.1e-06 26.4 3.0 0.27 10.6 0.1 3.5 2 2 1 3 3 3 2 Coatomer epsilon subunit DUF627 PF04781.12 gi|134045733|ref|YP_001097219.1| - 4.2e-06 26.7 0.8 0.8 9.8 0.0 5.3 2 2 0 4 4 4 2 Protein of unknown function (DUF627) DUF3856 PF12968.7 gi|134045733|ref|YP_001097219.1| - 6.2e-06 26.3 0.4 8.2 6.5 0.0 5.5 3 2 2 5 5 5 0 Domain of Unknown Function (DUF3856) TPR_20 PF14561.6 gi|134045733|ref|YP_001097219.1| - 1.5e-05 25.2 0.1 8.9 6.7 0.0 5.4 3 2 3 6 6 5 0 Tetratricopeptide repeat Clathrin PF00637.20 gi|134045733|ref|YP_001097219.1| - 1.9e-05 24.6 16.6 3.9e-05 23.6 4.8 4.0 3 1 1 4 4 3 1 Region in Clathrin and VPS PPR PF01535.20 gi|134045733|ref|YP_001097219.1| - 2.5e-05 24.2 7.3 8.4 6.9 0.1 6.3 8 0 0 8 8 5 0 PPR repeat Alkyl_sulf_dimr PF14863.6 gi|134045733|ref|YP_001097219.1| - 0.00019 21.9 0.1 0.17 12.3 0.0 3.4 3 1 0 3 3 3 1 Alkyl sulfatase dimerisation SRP_TPR_like PF17004.5 gi|134045733|ref|YP_001097219.1| - 0.001 19.1 18.6 0.48 10.5 4.0 4.9 1 1 3 4 4 4 1 Putative TPR-like repeat Foie-gras_1 PF11817.8 gi|134045733|ref|YP_001097219.1| - 0.0016 18.1 0.6 0.96 9.0 0.0 3.9 3 1 0 4 4 4 1 Foie gras liver health family 1 DUF1955 PF09205.10 gi|134045733|ref|YP_001097219.1| - 0.0016 18.2 1.6 0.47 10.2 0.0 4.3 4 1 0 5 5 5 1 Domain of unknown function (DUF1955) RPN7 PF10602.9 gi|134045733|ref|YP_001097219.1| - 0.0018 18.0 7.6 8.6 6.0 0.0 5.5 2 1 3 5 5 5 0 26S proteasome subunit RPN7 SPO22 PF08631.10 gi|134045733|ref|YP_001097219.1| - 0.0028 17.2 3.2 13 5.2 0.0 4.6 4 1 0 4 4 4 0 Meiosis protein SPO22/ZIP4 like DUF4919 PF16266.5 gi|134045733|ref|YP_001097219.1| - 0.0038 17.2 3.4 2.4 8.1 0.1 3.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4919) MIT PF04212.18 gi|134045733|ref|YP_001097219.1| - 0.0044 17.0 18.0 4.2 7.5 0.0 7.9 8 2 2 10 10 8 1 MIT (microtubule interacting and transport) domain YfiO PF13525.6 gi|134045733|ref|YP_001097219.1| - 0.016 14.9 7.8 0.34 10.6 0.4 3.6 2 1 1 3 3 3 0 Outer membrane lipoprotein PPR_2 PF13041.6 gi|134045733|ref|YP_001097219.1| - 0.018 15.2 6.1 16 5.8 0.0 5.1 5 0 0 5 5 5 0 PPR repeat family UPF0227 PF05728.12 gi|134045733|ref|YP_001097219.1| - 0.03 14.2 0.1 0.074 13.0 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) PPTA PF01239.22 gi|134045733|ref|YP_001097219.1| - 0.032 14.0 1.4 3.3 7.6 0.4 3.4 2 0 0 2 2 2 0 Protein prenyltransferase alpha subunit repeat BTAD PF03704.17 gi|134045733|ref|YP_001097219.1| - 0.052 14.0 0.0 52 4.3 0.0 4.0 2 1 1 5 5 5 0 Bacterial transcriptional activator domain TPR_18 PF13512.6 gi|134045733|ref|YP_001097219.1| - 0.12 12.5 2.9 13 5.9 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat FAT PF02259.23 gi|134045733|ref|YP_001097219.1| - 0.16 11.2 3.1 8.8 5.4 0.1 3.1 1 1 0 2 2 2 0 FAT domain Sel1 PF08238.12 gi|134045733|ref|YP_001097219.1| - 0.37 11.5 5.7 68 4.3 0.0 5.1 5 0 0 5 5 4 0 Sel1 repeat CbiQ PF02361.16 gi|134045734|ref|YP_001097220.1| - 4.5e-41 140.9 8.7 5.9e-41 140.5 8.7 1.1 1 0 0 1 1 1 1 Cobalt transport protein Dabb PF07876.12 gi|134045735|ref|YP_001097221.1| - 1.8e-27 95.8 0.9 2e-27 95.7 0.9 1.0 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain tRNA-synt_2d PF01409.20 gi|134045735|ref|YP_001097221.1| - 0.098 12.1 0.1 0.11 11.9 0.1 1.1 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) PDGLE PF13190.6 gi|134045736|ref|YP_001097222.1| - 2.4e-18 65.8 0.5 3e-18 65.5 0.5 1.1 1 0 0 1 1 1 1 PDGLE domain TrbC PF04956.13 gi|134045736|ref|YP_001097222.1| - 0.023 14.9 1.2 0.2 11.9 0.0 2.0 2 0 0 2 2 2 0 TrbC/VIRB2 family FeoB_associated PF12669.7 gi|134045736|ref|YP_001097222.1| - 1.2 9.6 3.3 4.7 7.7 0.1 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DEAD PF00270.29 gi|134045737|ref|YP_001097223.1| - 1.5e-26 93.2 0.0 4.7e-26 91.6 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|134045737|ref|YP_001097223.1| - 1.2e-12 48.2 2.9 3e-12 46.9 0.1 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|134045737|ref|YP_001097223.1| - 2.5e-08 34.2 4.6 1.2e-07 32.1 0.4 3.6 3 1 0 3 3 3 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|134045737|ref|YP_001097223.1| - 0.051 13.4 0.0 0.17 11.7 0.0 1.9 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HHH_5 PF14520.6 gi|134045737|ref|YP_001097223.1| - 0.14 12.8 0.8 0.44 11.2 0.4 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain RNase_T PF00929.24 gi|134045738|ref|YP_001097224.1| - 1.8e-14 54.6 0.1 2.6e-14 54.1 0.1 1.3 1 1 0 1 1 1 1 Exonuclease DNA_pol_A_exo1 PF01612.20 gi|134045738|ref|YP_001097224.1| - 0.00078 19.2 0.5 0.018 14.8 0.1 2.7 2 1 0 2 2 2 1 3'-5' exonuclease RNase_H_2 PF13482.6 gi|134045738|ref|YP_001097224.1| - 0.0013 18.8 0.1 0.0061 16.6 0.1 1.9 1 1 0 1 1 1 1 RNase_H superfamily DUF5051 PF16473.5 gi|134045738|ref|YP_001097224.1| - 0.0067 16.4 0.0 0.017 15.1 0.0 1.8 1 1 0 1 1 1 1 3' exoribonuclease, RNase T-like DNApol_Exo PF18136.1 gi|134045738|ref|YP_001097224.1| - 0.031 13.4 0.0 0.04 13.0 0.0 1.2 1 0 0 1 1 1 0 DNA mitochondrial polymerase exonuclease domain Acetyltransf_3 PF13302.7 gi|134045739|ref|YP_001097225.1| - 3.2e-22 79.7 0.0 3.7e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|134045739|ref|YP_001097225.1| - 2.2e-07 31.1 0.9 2.6e-07 30.9 0.9 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|134045739|ref|YP_001097225.1| - 0.00011 22.4 0.0 0.00014 22.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|134045739|ref|YP_001097225.1| - 0.042 13.5 0.0 0.065 12.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1241 PF06840.11 gi|134045739|ref|YP_001097225.1| - 0.069 12.8 0.9 0.13 11.9 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) CTP_synth_N PF06418.14 gi|134045740|ref|YP_001097226.1| - 7.3e-130 432.0 0.3 9.7e-130 431.6 0.3 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|134045740|ref|YP_001097226.1| - 5.9e-55 186.0 0.0 9.9e-55 185.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|134045740|ref|YP_001097226.1| - 5.5e-07 29.6 0.0 1.5e-06 28.2 0.0 1.7 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|134045740|ref|YP_001097226.1| - 0.0096 16.0 0.0 0.035 14.1 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DJ-1_PfpI PF01965.24 gi|134045740|ref|YP_001097226.1| - 0.11 12.3 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 DJ-1/PfpI family GMP_synt_C PF00958.22 gi|134045741|ref|YP_001097227.1| - 1.6e-36 124.2 0.1 3.2e-36 123.2 0.1 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|134045741|ref|YP_001097227.1| - 6.4e-13 48.4 0.1 2.2e-08 33.5 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ThiI PF02568.14 gi|134045741|ref|YP_001097227.1| - 2.5e-05 23.9 0.0 4.8e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|134045741|ref|YP_001097227.1| - 0.00026 19.9 0.0 0.0029 16.4 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|134045741|ref|YP_001097227.1| - 0.00057 19.7 0.0 0.00096 19.0 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|134045741|ref|YP_001097227.1| - 0.00086 18.9 0.0 0.0071 15.9 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|134045741|ref|YP_001097227.1| - 0.0046 17.0 0.0 0.0079 16.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.19 gi|134045741|ref|YP_001097227.1| - 0.014 14.7 0.2 0.023 14.0 0.2 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase TPR_1 PF00515.28 gi|134045742|ref|YP_001097228.1| - 2.1e-30 103.3 13.8 1.8e-11 43.4 0.2 5.3 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|134045742|ref|YP_001097228.1| - 1e-27 94.0 3.0 4.9e-09 35.6 0.0 4.4 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|134045742|ref|YP_001097228.1| - 9.2e-19 66.0 4.4 1.1e-06 28.4 0.1 4.4 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|134045742|ref|YP_001097228.1| - 5.2e-13 48.4 2.0 0.0013 18.4 0.1 4.3 3 1 1 4 4 4 3 TPR repeat TPR_12 PF13424.6 gi|134045742|ref|YP_001097228.1| - 8.1e-13 48.5 0.0 0.0068 16.7 0.0 4.1 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|134045742|ref|YP_001097228.1| - 6.6e-10 39.0 0.0 0.0032 17.6 0.0 3.5 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|134045742|ref|YP_001097228.1| - 6.8e-10 39.4 0.0 0.0019 18.8 0.0 3.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|134045742|ref|YP_001097228.1| - 8.9e-10 38.6 0.2 0.79 10.5 0.0 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|134045742|ref|YP_001097228.1| - 3.1e-09 36.2 0.1 0.074 13.1 0.0 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|134045742|ref|YP_001097228.1| - 5.7e-09 36.4 0.0 0.029 14.9 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|134045742|ref|YP_001097228.1| - 5.7e-09 36.0 0.0 0.067 14.0 0.0 3.7 3 1 1 4 4 4 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|134045742|ref|YP_001097228.1| - 9.2e-09 35.2 10.8 0.01 15.9 0.3 4.3 4 0 0 4 4 4 3 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|134045742|ref|YP_001097228.1| - 2.1e-08 33.7 0.0 0.11 12.4 0.0 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|134045742|ref|YP_001097228.1| - 6.7e-08 32.7 6.6 0.022 15.0 0.2 3.1 2 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_3 PF07720.12 gi|134045742|ref|YP_001097228.1| - 1.5e-07 31.2 5.8 0.05 13.6 0.1 3.8 4 0 0 4 4 4 3 Tetratricopeptide repeat MIT PF04212.18 gi|134045742|ref|YP_001097228.1| - 6e-06 26.2 7.6 0.12 12.5 0.1 4.4 4 1 0 4 4 4 2 MIT (microtubule interacting and transport) domain Coatomer_E PF04733.14 gi|134045742|ref|YP_001097228.1| - 4.8e-05 22.9 1.5 0.00017 21.1 0.4 1.9 2 0 0 2 2 2 1 Coatomer epsilon subunit TPR_17 PF13431.6 gi|134045742|ref|YP_001097228.1| - 0.00017 21.7 9.1 0.23 11.9 0.0 4.9 7 0 0 7 7 5 2 Tetratricopeptide repeat Sel1 PF08238.12 gi|134045742|ref|YP_001097228.1| - 0.00031 21.3 1.3 0.4 11.4 0.1 3.2 3 0 0 3 3 3 1 Sel1 repeat DUF5113 PF17140.4 gi|134045742|ref|YP_001097228.1| - 0.00071 19.4 6.7 0.48 10.2 0.1 3.8 1 1 2 3 3 3 2 Domain of unknown function (DUF5113) PPR PF01535.20 gi|134045742|ref|YP_001097228.1| - 0.00072 19.6 8.9 8.3 6.9 0.2 4.4 4 0 0 4 4 4 0 PPR repeat TOM20_plant PF06552.12 gi|134045742|ref|YP_001097228.1| - 0.0012 18.7 4.5 0.031 14.0 0.2 2.7 1 1 0 2 2 2 1 Plant specific mitochondrial import receptor subunit TOM20 SRP_TPR_like PF17004.5 gi|134045742|ref|YP_001097228.1| - 0.02 14.9 10.1 0.19 11.8 0.2 2.7 1 1 0 2 2 2 0 Putative TPR-like repeat DUF3887 PF13026.6 gi|134045742|ref|YP_001097228.1| - 0.2 12.5 4.8 14 6.6 0.1 3.1 3 1 1 4 4 3 0 Protein of unknown function (DUF3887) SPO22 PF08631.10 gi|134045742|ref|YP_001097228.1| - 0.36 10.3 5.9 7.9 5.9 0.0 2.9 1 1 0 3 3 3 0 Meiosis protein SPO22/ZIP4 like PPR_2 PF13041.6 gi|134045742|ref|YP_001097228.1| - 2.9 8.2 9.0 18 5.6 0.1 3.9 4 0 0 4 4 4 0 PPR repeat family Polysacc_synt PF01943.17 gi|134045743|ref|YP_001097229.1| - 2.3e-29 102.6 26.0 2.3e-29 102.6 26.0 2.4 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|134045743|ref|YP_001097229.1| - 5.8e-21 75.1 26.0 4.1e-18 65.8 11.6 4.4 4 1 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|134045743|ref|YP_001097229.1| - 1.5e-10 40.9 16.5 1.5e-10 40.9 16.5 4.2 3 2 1 4 4 4 1 MatE MurJ PF03023.14 gi|134045743|ref|YP_001097229.1| - 6.5e-09 34.9 36.9 1.4e-08 33.8 36.9 1.5 1 1 0 1 1 1 1 Lipid II flippase MurJ ArgJ PF01960.18 gi|134045744|ref|YP_001097230.1| - 6.2e-133 443.1 11.4 7.7e-133 442.8 11.4 1.0 1 0 0 1 1 1 1 ArgJ family POC1 PF10450.9 gi|134045744|ref|YP_001097230.1| - 0.015 14.3 0.2 2.4 7.1 0.0 2.3 2 0 0 2 2 2 0 POC1 chaperone AAA_18 PF13238.6 gi|134045745|ref|YP_001097231.1| - 0.00028 21.4 2.6 0.0015 19.1 0.4 2.5 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|134045745|ref|YP_001097231.1| - 0.0086 16.3 0.1 0.15 12.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|134045745|ref|YP_001097231.1| - 0.02 14.6 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|134045745|ref|YP_001097231.1| - 0.029 14.9 0.2 0.051 14.1 0.2 1.9 1 1 0 1 1 1 0 ABC transporter KAP_NTPase PF07693.14 gi|134045745|ref|YP_001097231.1| - 0.043 13.1 0.0 0.061 12.6 0.0 1.6 1 1 0 1 1 1 0 KAP family P-loop domain CoaE PF01121.20 gi|134045745|ref|YP_001097231.1| - 0.12 12.0 0.0 14 5.3 0.0 2.3 2 0 0 2 2 2 0 Dephospho-CoA kinase Rhodanese PF00581.20 gi|134045746|ref|YP_001097232.1| - 1.2e-13 51.5 0.0 2.6e-13 50.4 0.0 1.5 1 1 0 1 1 1 1 Rhodanese-like domain NOG1_N PF17835.1 gi|134045747|ref|YP_001097233.1| - 2.8e-45 154.2 0.4 4.4e-45 153.5 0.4 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|134045747|ref|YP_001097233.1| - 1.7e-20 72.6 0.2 3.7e-20 71.5 0.2 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|134045747|ref|YP_001097233.1| - 1.9e-19 69.8 0.0 3.7e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|134045747|ref|YP_001097233.1| - 1.6e-14 53.7 0.0 2.2e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B PduV-EutP PF10662.9 gi|134045747|ref|YP_001097233.1| - 5.6e-07 29.4 0.1 2.1e-05 24.3 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|134045747|ref|YP_001097233.1| - 2.6e-06 27.5 0.5 0.017 15.0 0.1 2.8 2 1 0 2 2 2 2 RsgA GTPase Arf PF00025.21 gi|134045747|ref|YP_001097233.1| - 0.00037 20.0 0.3 0.12 11.9 0.1 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|134045747|ref|YP_001097233.1| - 0.00087 18.9 0.0 0.23 11.0 0.1 2.8 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain SRPRB PF09439.10 gi|134045747|ref|YP_001097233.1| - 0.01 15.3 0.0 0.023 14.1 0.0 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|134045747|ref|YP_001097233.1| - 0.015 15.4 0.0 0.75 9.8 0.0 2.4 1 1 1 2 2 2 0 Dynamin family MMR_HSR1_Xtn PF16897.5 gi|134045747|ref|YP_001097233.1| - 0.019 15.0 0.0 0.043 13.8 0.0 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain TniB PF05621.11 gi|134045747|ref|YP_001097233.1| - 0.022 14.2 0.0 0.094 12.1 0.0 2.0 2 1 0 2 2 2 0 Bacterial TniB protein AAA_18 PF13238.6 gi|134045747|ref|YP_001097233.1| - 0.029 14.9 0.0 0.068 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|134045747|ref|YP_001097233.1| - 0.04 13.5 0.0 2.8 7.5 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|134045747|ref|YP_001097233.1| - 0.048 14.0 0.0 0.1 13.0 0.0 1.8 2 1 0 2 2 2 0 AAA ATPase domain MapZ_EC1 PF18041.1 gi|134045747|ref|YP_001097233.1| - 0.1 12.8 0.2 8.3 6.7 0.0 2.8 2 1 1 3 3 3 0 MapZ extracellular domain 1 AAA_22 PF13401.6 gi|134045747|ref|YP_001097233.1| - 0.11 12.7 0.1 0.87 9.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain Roc PF08477.13 gi|134045747|ref|YP_001097233.1| - 0.15 12.2 0.0 3.7 7.8 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase DUF126 PF01989.16 gi|134045748|ref|YP_001097234.1| - 6e-25 86.9 0.9 9.7e-25 86.2 0.1 1.7 2 0 0 2 2 2 1 Aconitase X swivel domain Class_IIIsignal PF04021.12 gi|134045749|ref|YP_001097235.1| - 2.6e-09 36.7 1.7 3.6e-09 36.3 1.7 1.2 1 0 0 1 1 1 1 Class III signal peptide AIRS_C PF02769.22 gi|134045750|ref|YP_001097236.1| - 1.4e-22 80.5 0.1 3.2e-22 79.4 0.1 1.6 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|134045750|ref|YP_001097236.1| - 8.6e-13 48.8 0.2 1.8e-12 47.7 0.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain PK_C PF02887.16 gi|134045751|ref|YP_001097237.1| - 1.1e-14 54.6 0.4 1.6e-14 54.2 0.4 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Lactamase_B_2 PF12706.7 gi|134045752|ref|YP_001097238.1| - 7.2e-14 51.8 0.0 1.7e-12 47.3 0.0 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|134045752|ref|YP_001097238.1| - 3.7e-08 33.6 0.0 7.8e-08 32.6 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|134045752|ref|YP_001097238.1| - 4.8e-08 32.6 0.0 8.4e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease PDEase_II PF02112.15 gi|134045752|ref|YP_001097238.1| - 0.028 13.5 0.0 0.061 12.4 0.0 1.5 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II Macro PF01661.21 gi|134045752|ref|YP_001097238.1| - 0.075 13.1 0.1 0.16 12.0 0.1 1.5 1 0 0 1 1 1 0 Macro domain TrmB PF01978.19 gi|134045753|ref|YP_001097239.1| - 7.9e-16 57.7 0.0 1.1e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|134045753|ref|YP_001097239.1| - 0.0023 17.4 0.1 0.0035 16.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|134045753|ref|YP_001097239.1| - 0.0028 17.6 0.1 0.0044 16.9 0.1 1.3 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|134045753|ref|YP_001097239.1| - 0.0029 17.5 0.0 0.0041 17.0 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|134045753|ref|YP_001097239.1| - 0.0079 16.1 0.1 0.012 15.5 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 gi|134045753|ref|YP_001097239.1| - 0.01 15.6 0.1 0.017 14.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|134045753|ref|YP_001097239.1| - 0.028 14.4 0.1 0.051 13.6 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|134045753|ref|YP_001097239.1| - 0.034 14.0 0.0 0.05 13.4 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|134045753|ref|YP_001097239.1| - 0.041 13.8 0.0 0.098 12.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|134045753|ref|YP_001097239.1| - 0.047 13.4 0.1 0.076 12.7 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HrcA_DNA-bdg PF03444.15 gi|134045753|ref|YP_001097239.1| - 0.056 13.1 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RP-C PF03428.13 gi|134045753|ref|YP_001097239.1| - 0.057 13.1 0.1 0.079 12.6 0.1 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain Rrf2 PF02082.20 gi|134045753|ref|YP_001097239.1| - 0.088 13.2 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.20 gi|134045753|ref|YP_001097239.1| - 0.15 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Tnp_Tc3_1 PF11427.8 gi|134045753|ref|YP_001097239.1| - 0.16 11.9 0.1 0.28 11.1 0.1 1.3 1 0 0 1 1 1 0 Tc3 transposase CBS PF00571.28 gi|134045754|ref|YP_001097240.1| - 3.2e-23 81.9 1.6 2.9e-12 46.9 0.7 2.1 2 0 0 2 2 2 2 CBS domain THF_DHG_CYH_C PF02882.19 gi|134045754|ref|YP_001097240.1| - 0.029 13.7 0.1 0.037 13.3 0.1 1.2 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SNARE_assoc PF09335.11 gi|134045755|ref|YP_001097241.1| - 9.2e-17 61.6 9.4 9.2e-17 61.6 9.4 1.6 1 1 1 2 2 2 1 SNARE associated Golgi protein FMN_red PF03358.15 gi|134045757|ref|YP_001097243.1| - 9.1e-41 139.2 0.0 1.2e-40 138.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|134045757|ref|YP_001097243.1| - 3.5e-15 56.3 0.0 4.5e-15 55.9 0.0 1.2 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|134045757|ref|YP_001097243.1| - 0.0066 16.7 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain DUF2284 PF10050.9 gi|134045757|ref|YP_001097243.1| - 0.031 14.0 0.1 0.049 13.4 0.1 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) Tautomerase PF01361.21 gi|134045758|ref|YP_001097244.1| - 7.7e-12 45.0 0.1 8.3e-12 44.9 0.1 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|134045758|ref|YP_001097244.1| - 4.6e-05 23.4 0.0 5e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Tautomerase enzyme DUF473 PF04322.12 gi|134045759|ref|YP_001097245.1| - 1.8e-33 114.9 0.3 2e-33 114.7 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.9 gi|134045760|ref|YP_001097246.1| - 2.5e-43 148.6 0.0 2.8e-43 148.4 0.0 1.0 1 0 0 1 1 1 1 PAC2 family RuvA_C PF07499.13 gi|134045760|ref|YP_001097246.1| - 0.12 12.9 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 RuvA, C-terminal domain NTP_transf_3 PF12804.7 gi|134045761|ref|YP_001097247.1| - 3.4e-11 43.8 0.0 8.8e-11 42.4 0.0 1.7 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|134045761|ref|YP_001097247.1| - 1.2e-10 41.4 0.0 1.9e-10 40.8 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.19 gi|134045761|ref|YP_001097247.1| - 2.1e-07 31.1 0.1 3.8e-07 30.2 0.1 1.6 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|134045761|ref|YP_001097247.1| - 4.4e-07 29.9 0.0 5.3e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PRC PF05239.16 gi|134045762|ref|YP_001097248.1| - 9.8e-14 51.2 0.3 1.1e-13 51.0 0.3 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF2171 PF09939.9 gi|134045762|ref|YP_001097248.1| - 0.011 16.0 0.0 0.014 15.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) DAP_epimerase PF01678.19 gi|134045763|ref|YP_001097249.1| - 2.5e-66 221.3 0.1 4.5e-34 117.2 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.16 gi|134045763|ref|YP_001097249.1| - 1.8e-07 30.9 0.0 2.9e-07 30.2 0.0 1.3 1 1 0 1 1 1 1 Phenazine biosynthesis-like protein Asn_synthase PF00733.21 gi|134045764|ref|YP_001097250.1| - 4.3e-56 191.1 0.1 8.1e-32 111.2 0.1 2.1 1 1 1 2 2 2 2 Asparagine synthase GATase_6 PF13522.6 gi|134045764|ref|YP_001097250.1| - 5.3e-35 120.5 0.0 9.2e-35 119.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|134045764|ref|YP_001097250.1| - 9.7e-30 103.0 0.1 4.2e-29 100.9 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain Diphthami_syn_2 PF01902.17 gi|134045764|ref|YP_001097250.1| - 0.0059 16.1 0.8 0.013 15.1 0.8 1.5 1 0 0 1 1 1 1 Diphthamide synthase DUF1933 PF09147.10 gi|134045764|ref|YP_001097250.1| - 0.055 13.1 0.0 0.15 11.6 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1933) DHODB_Fe-S_bind PF10418.9 gi|134045765|ref|YP_001097251.1| - 1.6e-13 50.2 4.2 3.8e-13 49.0 4.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|134045765|ref|YP_001097251.1| - 1.8e-05 25.3 0.0 7.7e-05 23.3 0.0 1.9 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.12 gi|134045765|ref|YP_001097251.1| - 0.016 15.3 0.3 1.3 9.1 0.2 2.2 2 0 0 2 2 2 0 Ferric reductase NAD binding domain FAD_binding_6 PF00970.24 gi|134045765|ref|YP_001097251.1| - 0.035 14.5 0.0 0.14 12.5 0.0 2.0 1 1 0 1 1 1 0 Oxidoreductase FAD-binding domain Fer2_3 PF13085.6 gi|134045765|ref|YP_001097251.1| - 0.16 12.0 0.9 0.3 11.1 0.9 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain AdoHcyase PF05221.17 gi|134045766|ref|YP_001097252.1| - 3.4e-64 216.9 0.0 7.2e-35 120.6 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|134045766|ref|YP_001097252.1| - 4.1e-53 179.8 3.2 4.3e-53 179.7 0.8 2.0 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|134045766|ref|YP_001097252.1| - 2.5e-09 36.8 0.3 1e-08 34.8 0.1 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|134045766|ref|YP_001097252.1| - 1.2e-05 24.9 0.1 2.6e-05 23.9 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|134045766|ref|YP_001097252.1| - 0.078 12.8 0.4 0.3 11.0 0.2 2.1 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Rpr2 PF04032.16 gi|134045767|ref|YP_001097253.1| - 2.1e-15 56.7 0.3 2.8e-15 56.4 0.3 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain LUC7 PF03194.15 gi|134045767|ref|YP_001097253.1| - 0.0034 17.1 0.7 0.1 12.2 0.7 2.0 1 1 0 1 1 1 1 LUC7 N_terminus A2L_zn_ribbon PF08792.10 gi|134045767|ref|YP_001097253.1| - 0.036 13.8 1.5 0.65 9.8 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF3268 PF11672.8 gi|134045767|ref|YP_001097253.1| - 0.049 14.0 1.4 0.21 12.0 0.4 2.0 2 0 0 2 2 2 0 zinc-finger-containing domain ADK_lid PF05191.14 gi|134045767|ref|YP_001097253.1| - 0.22 11.6 3.1 0.49 10.4 3.1 1.7 1 1 0 1 1 1 0 Adenylate kinase, active site lid DUF4674 PF15719.5 gi|134045767|ref|YP_001097253.1| - 0.26 11.3 7.7 1.7 8.6 0.1 2.8 1 1 1 3 3 3 0 Domain of unknown function (DUF4674) Taxilin PF09728.9 gi|134045768|ref|YP_001097254.1| - 0.00024 20.4 1.6 0.00032 20.0 1.4 1.4 1 1 0 1 1 1 1 Myosin-like coiled-coil protein EIF_2_alpha PF07541.12 gi|134045768|ref|YP_001097254.1| - 0.00085 19.4 4.1 0.0027 17.8 0.9 2.6 2 1 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit DUF1664 PF07889.12 gi|134045768|ref|YP_001097254.1| - 0.014 15.4 3.0 0.14 12.2 0.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|134045768|ref|YP_001097254.1| - 0.076 13.1 12.7 0.25 11.4 8.2 2.6 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Prominin PF05478.11 gi|134045768|ref|YP_001097254.1| - 0.077 10.9 7.0 0.077 11.0 5.8 1.4 1 1 0 1 1 1 0 Prominin SpmSyn_N PF17950.1 gi|134045768|ref|YP_001097254.1| - 0.67 10.2 3.5 1.2 9.3 0.1 2.9 2 1 2 4 4 4 0 S-adenosylmethionine decarboxylase N -terminal CdvA PF18822.1 gi|134045768|ref|YP_001097254.1| - 1.9 8.3 8.7 0.27 11.1 2.1 2.8 2 1 0 3 3 3 0 CdvA-like coiled-coil domain LXG PF04740.12 gi|134045768|ref|YP_001097254.1| - 4.5 6.9 16.8 0.28 10.9 4.2 2.9 1 1 3 4 4 4 0 LXG domain of WXG superfamily DapB_C PF05173.14 gi|134045769|ref|YP_001097255.1| - 3.1e-40 137.0 0.1 4.7e-40 136.4 0.1 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|134045769|ref|YP_001097255.1| - 8.7e-34 116.3 2.3 1.7e-33 115.4 2.3 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Peripla_BP_6 PF13458.6 gi|134045769|ref|YP_001097255.1| - 0.015 15.0 0.1 0.035 13.8 0.1 1.6 1 1 0 1 1 1 0 Periplasmic binding protein Antiterm PF03589.13 gi|134045769|ref|YP_001097255.1| - 0.14 12.5 0.0 0.32 11.3 0.0 1.5 1 0 0 1 1 1 0 Antitermination protein Gp_dh_N PF00044.24 gi|134045769|ref|YP_001097255.1| - 0.52 10.7 2.6 6 7.3 1.5 3.1 2 2 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Methyltrn_RNA_2 PF04013.12 gi|134045770|ref|YP_001097256.1| - 3.1e-68 229.4 0.0 3.5e-68 229.2 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Rol_Rep_N PF18106.1 gi|134045770|ref|YP_001097256.1| - 0.055 13.8 0.0 0.094 13.0 0.0 1.3 1 0 0 1 1 1 0 Rolling Circle replication initiation protein N-terminal domain CheW PF01584.19 gi|134045771|ref|YP_001097257.1| - 1.9e-33 115.0 1.4 2.1e-33 114.9 1.4 1.0 1 0 0 1 1 1 1 CheW-like domain CheB_methylest PF01339.17 gi|134045772|ref|YP_001097258.1| - 2.7e-57 193.2 0.5 3e-56 189.8 0.1 2.3 2 1 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 gi|134045772|ref|YP_001097258.1| - 3.5e-27 94.8 3.4 2.5e-25 88.8 0.9 3.1 2 1 1 3 3 3 2 Response regulator receiver domain DXP_reductoisom PF02670.16 gi|134045772|ref|YP_001097258.1| - 0.033 14.9 2.5 0.066 13.9 0.2 2.4 3 0 0 3 3 3 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase P2 PF07194.11 gi|134045773|ref|YP_001097259.1| - 3.9e-35 119.8 16.0 7.8e-23 80.3 1.7 4.2 4 0 0 4 4 4 2 P2 response regulator binding domain CheW PF01584.19 gi|134045773|ref|YP_001097259.1| - 1.3e-23 83.1 1.9 2.7e-23 82.1 1.9 1.6 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 gi|134045773|ref|YP_001097259.1| - 1e-19 70.6 0.3 4.5e-19 68.5 0.0 2.3 2 0 0 2 2 2 1 Hpt domain HATPase_c PF02518.26 gi|134045773|ref|YP_001097259.1| - 3.5e-17 62.9 3.3 4.3e-17 62.6 0.2 2.8 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 gi|134045773|ref|YP_001097259.1| - 6.6e-16 58.5 1.5 6.6e-16 58.5 1.5 3.7 3 1 0 3 3 3 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 gi|134045773|ref|YP_001097259.1| - 0.00043 20.1 0.7 0.0015 18.4 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase mTERF PF02536.14 gi|134045773|ref|YP_001097259.1| - 0.036 13.0 5.3 0.0087 15.0 1.2 2.1 2 0 0 2 2 2 0 mTERF CheD PF03975.13 gi|134045774|ref|YP_001097260.1| - 1.1e-31 109.1 0.4 1.4e-31 108.8 0.4 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction MCPsignal PF00015.21 gi|134045775|ref|YP_001097261.1| - 1.2e-35 122.8 43.0 6.9e-33 113.9 17.1 4.2 1 1 4 5 5 5 5 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1664 PF07889.12 gi|134045775|ref|YP_001097261.1| - 4.1e-05 23.6 29.9 0.019 15.0 1.0 5.4 2 2 3 5 5 5 4 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|134045775|ref|YP_001097261.1| - 6.6e-05 23.1 26.7 0.27 11.5 1.2 6.0 1 1 3 4 4 4 3 Bacterial protein of unknown function (DUF948) SpecificRecomb PF10136.9 gi|134045775|ref|YP_001097261.1| - 0.00069 18.1 1.8 0.001 17.5 1.8 1.3 1 0 0 1 1 1 1 Site-specific recombinase Spc7 PF08317.11 gi|134045775|ref|YP_001097261.1| - 0.0016 17.4 11.9 0.0016 17.4 11.9 3.3 1 1 2 3 3 3 1 Spc7 kinetochore protein Collagen_mid PF15984.5 gi|134045775|ref|YP_001097261.1| - 0.0022 17.8 1.1 0.018 14.8 0.1 2.3 1 1 1 2 2 2 2 Bacterial collagen, middle region Prominin PF05478.11 gi|134045775|ref|YP_001097261.1| - 0.0023 16.0 6.6 0.0023 16.0 6.6 2.7 1 1 0 2 2 2 1 Prominin Syntaxin-6_N PF09177.11 gi|134045775|ref|YP_001097261.1| - 0.0039 17.7 22.1 0.13 12.8 3.7 4.7 1 1 3 4 4 4 1 Syntaxin 6, N-terminal CK2S PF15011.6 gi|134045775|ref|YP_001097261.1| - 0.0043 17.0 3.4 2 8.3 0.0 2.8 2 0 0 2 2 2 1 Casein Kinase 2 substrate Transcrip_act PF04949.13 gi|134045775|ref|YP_001097261.1| - 0.0059 16.5 0.2 0.0059 16.5 0.2 3.9 3 1 1 4 4 4 1 Transcriptional activator DASH_Dad1 PF08649.10 gi|134045775|ref|YP_001097261.1| - 0.0074 16.5 11.3 0.011 15.9 0.1 5.6 5 1 2 7 7 7 1 DASH complex subunit Dad1 Laminin_I PF06008.14 gi|134045775|ref|YP_001097261.1| - 0.011 15.4 29.2 0.098 12.3 11.1 3.7 1 1 3 4 4 4 0 Laminin Domain I DUF3584 PF12128.8 gi|134045775|ref|YP_001097261.1| - 0.014 13.0 24.5 0.045 11.3 13.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) COG5 PF10392.9 gi|134045775|ref|YP_001097261.1| - 0.019 15.1 12.2 0.039 14.1 2.8 4.0 3 1 0 4 4 4 0 Golgi transport complex subunit 5 ISG65-75 PF11727.8 gi|134045775|ref|YP_001097261.1| - 0.027 13.7 33.0 0.062 12.5 3.5 4.0 2 1 2 4 4 4 0 Invariant surface glycoprotein Fib_alpha PF08702.10 gi|134045775|ref|YP_001097261.1| - 0.036 14.2 24.2 0.028 14.6 6.9 4.7 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family Flagellar_rod PF05149.12 gi|134045775|ref|YP_001097261.1| - 0.072 12.5 14.8 0.012 15.2 6.9 3.1 2 1 0 2 2 2 0 Paraflagellar rod protein Baculo_PEP_C PF04513.12 gi|134045775|ref|YP_001097261.1| - 0.1 12.7 23.1 3.2 7.8 2.3 4.6 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Jnk-SapK_ap_N PF09744.9 gi|134045775|ref|YP_001097261.1| - 0.14 12.4 17.2 0.025 14.8 8.4 3.1 2 1 1 3 3 3 0 JNK_SAPK-associated protein-1 WXG100 PF06013.12 gi|134045775|ref|YP_001097261.1| - 0.22 11.8 20.7 8.1 6.7 0.0 5.9 3 2 2 5 5 5 0 Proteins of 100 residues with WXG SCO1-SenC PF02630.14 gi|134045775|ref|YP_001097261.1| - 0.22 11.4 2.7 2 8.4 0.1 2.8 2 0 0 2 2 2 0 SCO1/SenC Laminin_II PF06009.12 gi|134045775|ref|YP_001097261.1| - 0.38 10.8 32.9 2.2 8.3 1.1 4.8 1 1 4 5 5 5 0 Laminin Domain II YscO PF07321.12 gi|134045775|ref|YP_001097261.1| - 0.39 10.7 18.5 0.13 12.2 0.6 3.1 2 1 1 3 3 3 0 Type III secretion protein YscO DUF745 PF05335.13 gi|134045775|ref|YP_001097261.1| - 0.43 10.3 34.3 0.97 9.1 7.4 4.1 1 1 4 5 5 5 0 Protein of unknown function (DUF745) DUF2959 PF11172.8 gi|134045775|ref|YP_001097261.1| - 1.1 9.4 27.2 1.3 9.1 2.0 4.5 1 1 3 4 4 4 0 Protein of unknown function (DUF2959) DUF3450 PF11932.8 gi|134045775|ref|YP_001097261.1| - 1.6 8.0 27.4 0.94 8.7 7.3 4.5 3 1 2 5 5 5 0 Protein of unknown function (DUF3450) Mt_ATP-synt_D PF05873.12 gi|134045775|ref|YP_001097261.1| - 2.7 7.8 23.2 0.55 10.1 5.4 4.1 3 1 1 4 4 4 0 ATP synthase D chain, mitochondrial (ATP5H) DUF1043 PF06295.12 gi|134045775|ref|YP_001097261.1| - 2.7 8.0 12.5 13 5.8 4.4 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1043) DisA-linker PF10635.9 gi|134045775|ref|YP_001097261.1| - 2.8 7.7 10.9 0.14 11.9 0.4 3.3 4 0 0 4 4 4 0 DisA bacterial checkpoint controller linker region DUF2203 PF09969.9 gi|134045775|ref|YP_001097261.1| - 3.3 8.5 21.3 36 5.1 0.8 4.8 2 1 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) ApoO PF09769.9 gi|134045775|ref|YP_001097261.1| - 3.5 7.6 6.2 23 4.9 0.3 3.9 3 1 1 4 4 4 0 Apolipoprotein O Mce4_CUP1 PF11887.8 gi|134045775|ref|YP_001097261.1| - 4.6 6.6 11.0 1 8.7 2.3 3.2 1 1 3 4 4 4 0 Cholesterol uptake porter CUP1 of Mce4, putative FlaC_arch PF05377.11 gi|134045775|ref|YP_001097261.1| - 5.3 7.5 21.2 2.9 8.4 0.2 5.7 6 1 0 6 6 6 0 Flagella accessory protein C (FlaC) HrpB7 PF09486.10 gi|134045775|ref|YP_001097261.1| - 5.6 7.3 24.5 0.79 10.1 10.1 3.8 3 2 1 4 4 3 0 Bacterial type III secretion protein (HrpB7) Occludin_ELL PF07303.13 gi|134045775|ref|YP_001097261.1| - 7.2 7.4 13.2 24 5.7 1.0 4.7 3 1 2 6 6 5 0 Occludin homology domain Tweety PF04906.13 gi|134045775|ref|YP_001097261.1| - 9.6 4.7 15.6 0.75 8.4 1.0 3.7 2 2 1 3 3 3 0 Tweety CheR PF01739.18 gi|134045776|ref|YP_001097262.1| - 1.3e-56 191.2 1.1 1.6e-56 190.9 1.1 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|134045776|ref|YP_001097262.1| - 1.8e-11 43.6 4.7 4e-11 42.5 0.4 2.8 3 1 0 3 3 3 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|134045776|ref|YP_001097262.1| - 0.0038 17.9 0.3 0.038 14.7 0.3 2.1 1 1 0 1 1 1 1 Methyltransferase domain DUF615 PF04751.14 gi|134045776|ref|YP_001097262.1| - 0.022 14.8 0.2 0.044 13.8 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF615) Methyltransf_25 PF13649.6 gi|134045776|ref|YP_001097262.1| - 0.086 13.6 0.1 5.2 7.8 0.1 2.3 1 1 0 1 1 1 0 Methyltransferase domain HAUS6_N PF14661.6 gi|134045776|ref|YP_001097262.1| - 0.091 12.3 2.1 1.7 8.2 0.0 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus GerE PF00196.19 gi|134045776|ref|YP_001097262.1| - 0.11 12.0 0.2 13 5.4 0.0 2.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family DUF87 PF01935.17 gi|134045776|ref|YP_001097262.1| - 0.23 11.5 4.0 0.37 10.8 4.0 1.5 1 1 0 1 1 1 0 Helicase HerA, central domain CheC PF04509.12 gi|134045777|ref|YP_001097263.1| - 6e-06 26.1 0.9 1.2e-05 25.1 0.5 1.8 2 0 0 2 2 2 1 CheC-like family CheX PF13690.6 gi|134045777|ref|YP_001097263.1| - 0.0024 18.0 0.1 0.0071 16.5 0.1 1.7 1 1 0 1 1 1 1 Chemotaxis phosphatase CheX FliM PF02154.15 gi|134045777|ref|YP_001097263.1| - 0.054 13.4 0.1 0.067 13.1 0.1 1.3 1 0 0 1 1 1 0 Flagellar motor switch protein FliM RRF PF01765.19 gi|134045777|ref|YP_001097263.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Ribosome recycling factor CheX PF13690.6 gi|134045778|ref|YP_001097264.1| - 7.5e-08 32.4 0.5 1.5e-07 31.5 0.5 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX DUF3334 PF11813.8 gi|134045778|ref|YP_001097264.1| - 0.002 17.9 0.5 0.0029 17.4 0.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3334) CheC PF04509.12 gi|134045778|ref|YP_001097264.1| - 0.0028 17.5 0.8 0.0065 16.3 0.8 1.6 1 0 0 1 1 1 1 CheC-like family TRAM PF01938.20 gi|134045778|ref|YP_001097264.1| - 0.022 14.8 0.0 0.054 13.5 0.0 1.6 1 0 0 1 1 1 0 TRAM domain Response_reg PF00072.24 gi|134045779|ref|YP_001097265.1| - 1.7e-30 105.5 0.7 1.9e-30 105.3 0.7 1.0 1 0 0 1 1 1 1 Response regulator receiver domain FAS_meander PF17951.1 gi|134045779|ref|YP_001097265.1| - 0.0067 16.3 0.2 0.0081 16.0 0.2 1.3 1 1 0 1 1 1 1 Fatty acid synthase meander beta sheet domain PA PF02225.22 gi|134045779|ref|YP_001097265.1| - 0.047 13.7 0.1 0.067 13.2 0.1 1.4 1 1 0 1 1 1 0 PA domain CheF-arch PF04283.12 gi|134045780|ref|YP_001097266.1| - 4.1e-56 190.2 0.1 5.5e-56 189.7 0.1 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea UPF0254 PF06787.11 gi|134045781|ref|YP_001097267.1| - 3.1e-59 199.4 0.4 3.5e-59 199.2 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0254) Shikimate_dh_N PF08501.11 gi|134045782|ref|YP_001097268.1| - 5.6e-32 109.9 0.1 1.1e-31 108.9 0.1 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|134045782|ref|YP_001097268.1| - 3.7e-11 42.6 0.0 7.6e-11 41.6 0.0 1.5 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|134045782|ref|YP_001097268.1| - 1.3e-08 35.0 0.1 2.5e-08 34.1 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|134045782|ref|YP_001097268.1| - 0.00038 20.7 0.0 0.004 17.4 0.0 2.2 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain GARS_N PF02844.15 gi|134045782|ref|YP_001097268.1| - 0.083 13.7 0.1 0.21 12.4 0.0 1.7 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain F420_ligase PF01996.16 gi|134045783|ref|YP_001097269.1| - 2e-56 191.1 0.7 2.3e-56 190.9 0.7 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase CobS PF02654.15 gi|134045784|ref|YP_001097270.1| - 4.7e-38 131.5 11.2 5.4e-38 131.3 11.2 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase HAD_2 PF13419.6 gi|134045785|ref|YP_001097271.1| - 1.5e-29 103.3 0.1 2e-29 102.9 0.1 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|134045785|ref|YP_001097271.1| - 2.2e-11 44.4 0.0 1.7e-10 41.5 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|134045785|ref|YP_001097271.1| - 9.2e-10 38.5 0.0 1.5e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|134045785|ref|YP_001097271.1| - 0.0023 18.3 0.0 0.0035 17.8 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PNK3P PF08645.11 gi|134045785|ref|YP_001097271.1| - 0.0038 17.0 0.0 1.9 8.1 0.0 2.2 2 0 0 2 2 2 2 Polynucleotide kinase 3 phosphatase PGP_phosphatase PF09419.10 gi|134045785|ref|YP_001097271.1| - 0.011 15.3 0.0 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.12 gi|134045785|ref|YP_001097271.1| - 0.044 13.5 0.0 0.25 11.0 0.0 2.0 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Ehbp PF10622.9 gi|134045786|ref|YP_001097272.1| - 2.4e-38 130.0 0.6 2.8e-38 129.8 0.6 1.0 1 0 0 1 1 1 1 Energy-converting hydrogenase B subunit P (EhbP) PAPS_reduct PF01507.19 gi|134045787|ref|YP_001097273.1| - 7.6e-43 146.6 0.0 1.6e-42 145.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|134045787|ref|YP_001097273.1| - 8e-10 38.5 0.4 1.7e-09 37.5 0.4 1.6 1 0 0 1 1 1 1 PUA domain DUF2120 PF09893.9 gi|134045787|ref|YP_001097273.1| - 0.00039 20.5 1.0 0.0052 16.9 0.7 2.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2120) TauE PF01925.19 gi|134045788|ref|YP_001097274.1| - 1.7e-50 171.9 32.8 2.1e-50 171.6 32.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE CTP_transf_like PF01467.26 gi|134045789|ref|YP_001097275.1| - 6.4e-16 58.8 0.0 7.4e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|134045789|ref|YP_001097275.1| - 0.018 14.9 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 FAD synthetase Peripla_BP_2 PF01497.18 gi|134045789|ref|YP_001097275.1| - 0.12 11.9 0.1 0.14 11.7 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein AI-2E_transport PF01594.16 gi|134045790|ref|YP_001097276.1| - 1.5e-43 149.2 29.0 1.9e-43 148.9 29.0 1.0 1 0 0 1 1 1 1 AI-2E family transporter ThrE PF06738.12 gi|134045790|ref|YP_001097276.1| - 0.025 13.9 0.3 0.025 13.9 0.3 2.5 2 1 0 2 2 2 0 Putative threonine/serine exporter Ion_trans_N PF08412.10 gi|134045790|ref|YP_001097276.1| - 0.17 11.5 0.0 0.34 10.5 0.0 1.5 1 0 0 1 1 1 0 Ion transport protein N-terminal Caveolin PF01146.17 gi|134045790|ref|YP_001097276.1| - 0.38 10.7 6.5 6.3 6.8 0.1 2.9 2 2 0 2 2 2 0 Caveolin AFOR_N PF02730.15 gi|134045791|ref|YP_001097277.1| - 9.3e-23 81.1 0.0 1.5e-22 80.4 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|134045791|ref|YP_001097277.1| - 1e-19 70.8 0.0 1.6e-19 70.2 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 GatB_N PF02934.15 gi|134045792|ref|YP_001097278.1| - 1.5e-88 296.8 0.0 2.1e-88 296.3 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|134045792|ref|YP_001097278.1| - 1.9e-45 154.3 6.3 3e-45 153.7 6.3 1.3 1 0 0 1 1 1 1 GatB domain His_kinase PF06580.13 gi|134045792|ref|YP_001097278.1| - 0.13 12.6 0.3 7.8 6.9 0.0 3.1 2 1 1 3 3 3 0 Histidine kinase HisG PF01634.18 gi|134045793|ref|YP_001097279.1| - 4.4e-52 176.3 0.2 6.6e-52 175.7 0.2 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|134045793|ref|YP_001097279.1| - 1.1e-25 89.6 0.2 2.5e-25 88.4 0.2 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain Methyltransf_18 PF12847.7 gi|134045793|ref|YP_001097279.1| - 0.038 13.9 0.2 0.075 13.0 0.2 1.6 1 1 0 1 1 1 0 Methyltransferase domain UPF0058 PF01893.16 gi|134045794|ref|YP_001097280.1| - 2.7e-31 107.7 1.1 2.7e-31 107.7 1.1 1.4 2 0 0 2 2 2 1 Uncharacterised protein family UPF0058 tRNA_NucTransf2 PF09249.11 gi|134045795|ref|YP_001097281.1| - 2e-42 144.0 0.1 3.7e-42 143.1 0.1 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|134045795|ref|YP_001097281.1| - 1.1e-12 48.0 0.5 3.9e-12 46.3 0.5 2.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|134045795|ref|YP_001097281.1| - 0.0092 16.2 0.1 0.027 14.6 0.1 1.8 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DUF530 PF04409.12 gi|134045796|ref|YP_001097282.1| - 8.4e-128 427.0 33.9 1.5e-84 284.2 27.6 3.0 1 1 1 2 2 2 2 Protein of unknown function (DUF530) Cyanate_lyase PF02560.14 gi|134045796|ref|YP_001097282.1| - 0.099 12.5 0.4 3.9 7.4 0.0 3.2 2 1 1 3 3 3 0 Cyanate lyase C-terminal domain CobD_Cbib PF03186.13 gi|134045797|ref|YP_001097283.1| - 1.2e-77 260.8 0.0 1.5e-77 260.5 0.0 1.0 1 0 0 1 1 1 1 CobD/Cbib protein EFP_N PF08207.12 gi|134045798|ref|YP_001097284.1| - 1.7e-06 28.0 0.3 2.3e-05 24.3 0.0 2.2 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain eIF-5a PF01287.20 gi|134045798|ref|YP_001097284.1| - 0.00026 21.0 0.5 0.00081 19.5 0.5 1.7 1 1 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP PF01132.20 gi|134045798|ref|YP_001097284.1| - 0.0064 16.5 0.1 0.013 15.6 0.1 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain DUF1609 PF07753.11 gi|134045798|ref|YP_001097284.1| - 0.014 14.9 0.2 0.018 14.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1609) ATP-synt_ab_N PF02874.23 gi|134045798|ref|YP_001097284.1| - 0.018 15.6 0.2 7.6 7.1 0.0 3.2 3 0 0 3 3 3 0 ATP synthase alpha/beta family, beta-barrel domain TP_methylase PF00590.20 gi|134045799|ref|YP_001097285.1| - 5e-28 98.5 0.0 5.9e-28 98.3 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases GRASP55_65 PF04495.14 gi|134045799|ref|YP_001097285.1| - 0.031 14.6 1.2 4.4 7.6 0.2 2.4 2 1 0 2 2 2 0 GRASP55/65 PDZ-like domain DUF3212 PF11486.8 gi|134045799|ref|YP_001097285.1| - 0.046 13.7 0.2 0.1 12.6 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3212) AGOG PF09171.10 gi|134045800|ref|YP_001097286.1| - 0.035 13.4 0.1 0.052 12.9 0.1 1.2 1 0 0 1 1 1 0 N-glycosylase/DNA lyase Rpp20 PF12328.8 gi|134045800|ref|YP_001097286.1| - 0.038 13.9 0.0 0.05 13.6 0.0 1.2 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Phage_integrase PF00589.22 gi|134045801|ref|YP_001097287.1| - 1.4e-37 129.1 0.2 2.2e-37 128.5 0.2 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|134045801|ref|YP_001097287.1| - 4e-07 30.2 0.7 4.2e-06 27.0 0.2 2.7 3 1 1 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|134045801|ref|YP_001097287.1| - 6.6e-05 22.9 1.2 0.00082 19.3 1.2 2.4 1 1 0 1 1 1 1 Archaeal phage integrase Phage_int_SAM_4 PF13495.6 gi|134045801|ref|YP_001097287.1| - 0.00018 21.9 3.8 0.0025 18.2 2.8 2.6 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|134045801|ref|YP_001097287.1| - 0.0047 17.2 9.8 0.02 15.2 3.8 3.3 2 1 1 3 3 3 1 Phage integrase SAM-like domain MarR PF01047.22 gi|134045802|ref|YP_001097288.1| - 0.019 14.9 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 MarR family WYL_3 PF18488.1 gi|134045804|ref|YP_001097290.1| - 0.024 15.0 0.1 0.049 14.0 0.1 1.5 1 0 0 1 1 1 0 WYL domain V-ATPase_H_C PF11698.8 gi|134045804|ref|YP_001097290.1| - 0.049 13.7 0.0 0.07 13.3 0.0 1.3 1 0 0 1 1 1 0 V-ATPase subunit H DUF1659 PF07872.11 gi|134045804|ref|YP_001097290.1| - 0.078 12.6 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1659) TF_Zn_Ribbon PF08271.12 gi|134045805|ref|YP_001097291.1| - 0.099 12.2 3.6 0.2 11.2 3.6 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Sgf11_N PF18519.1 gi|134045805|ref|YP_001097291.1| - 0.1 12.2 0.8 0.22 11.1 0.8 1.5 1 0 0 1 1 1 0 SAGA-associated factor 11 N-terminal domain Cas6b_C PF17262.2 gi|134045806|ref|YP_001097292.1| - 8.8e-44 148.3 0.7 1.5e-43 147.5 0.7 1.4 1 0 0 1 1 1 1 Cas6b C-terminal domain Cas6b_N PF17955.1 gi|134045806|ref|YP_001097292.1| - 2e-22 79.2 0.9 5.1e-22 77.9 0.6 1.8 2 0 0 2 2 2 1 Cas6b N-terminal domain PriA_3primeBD PF17764.1 gi|134045806|ref|YP_001097292.1| - 0.13 12.1 0.1 0.33 10.9 0.0 1.7 2 0 0 2 2 2 0 3′ DNA-binding domain (3′BD) Helicase_C PF00271.31 gi|134045807|ref|YP_001097293.1| - 6.6e-09 36.1 3.4 1.6e-07 31.6 0.9 3.0 1 1 1 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|134045807|ref|YP_001097293.1| - 1.5e-08 34.6 2.8 3.7e-08 33.3 0.1 2.9 3 1 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|134045807|ref|YP_001097293.1| - 1.7e-06 28.1 1.1 1.7e-06 28.1 1.1 2.9 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit HD PF01966.22 gi|134045807|ref|YP_001097293.1| - 0.0023 18.2 2.1 0.0044 17.2 0.4 2.4 2 0 0 2 2 2 1 HD domain HD_6 PF18019.1 gi|134045807|ref|YP_001097293.1| - 0.0083 16.3 0.0 0.017 15.3 0.0 1.4 1 0 0 1 1 1 1 HD domain AAA_22 PF13401.6 gi|134045807|ref|YP_001097293.1| - 0.034 14.4 0.1 17 5.7 0.0 2.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|134045807|ref|YP_001097293.1| - 0.038 13.7 0.1 0.15 11.8 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_19 PF13245.6 gi|134045807|ref|YP_001097293.1| - 0.074 13.4 0.0 0.51 10.7 0.0 2.3 1 1 0 1 1 1 0 AAA domain SWI2_SNF2 PF18766.1 gi|134045807|ref|YP_001097293.1| - 0.16 11.6 0.9 3.2 7.3 0.1 2.9 2 1 0 2 2 2 0 SWI2/SNF2 ATPase Erf4 PF10256.9 gi|134045807|ref|YP_001097293.1| - 0.19 11.9 13.6 3.7 7.7 0.0 3.7 3 0 0 3 3 3 0 Golgin subfamily A member 7/ERF4 family AAA PF00004.29 gi|134045807|ref|YP_001097293.1| - 5.9 7.3 6.3 4.9 7.6 0.0 3.3 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) Cas_Cas5d PF09704.10 gi|134045808|ref|YP_001097294.1| - 6e-05 23.0 0.0 7.6e-05 22.7 0.0 1.4 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Cas_Cas7 PF05107.12 gi|134045809|ref|YP_001097295.1| - 6.3e-57 193.0 0.3 7.9e-57 192.7 0.3 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cas7 Cas_TM1802 PF09484.10 gi|134045810|ref|YP_001097296.1| - 6.2e-81 273.0 46.5 7.4e-81 272.7 46.5 1.1 1 0 0 1 1 1 1 CRISPR-associated protein TM1802 (cas_TM1802) Cas_Cas1 PF01867.16 gi|134045811|ref|YP_001097297.1| - 1.5e-76 257.2 0.4 1.8e-76 257.0 0.4 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF4488 PF14869.6 gi|134045811|ref|YP_001097297.1| - 0.041 13.8 0.3 0.13 12.2 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4488) TypeIII_RM_meth PF12564.8 gi|134045811|ref|YP_001097297.1| - 0.13 12.4 6.4 0.13 12.4 0.8 3.0 3 0 0 3 3 3 0 Type III restriction/modification enzyme methylation subunit CRISPR_Cas2 PF09827.9 gi|134045812|ref|YP_001097298.1| - 9e-21 73.9 0.3 1.1e-20 73.6 0.3 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas4 PF01930.17 gi|134045813|ref|YP_001097299.1| - 2e-16 60.5 7.6 2.9e-16 60.0 7.6 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|134045813|ref|YP_001097299.1| - 5.9e-08 32.9 2.0 8e-08 32.5 1.3 1.4 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Lzipper-MIP1 PF14389.6 gi|134045813|ref|YP_001097299.1| - 0.11 12.8 0.1 0.23 11.8 0.1 1.6 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 DUF2683 PF10884.8 gi|134045814|ref|YP_001097300.1| - 2.2e-38 130.4 2.0 2.5e-38 130.2 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2683) ParE_toxin PF05016.15 gi|134045815|ref|YP_001097301.1| - 1.7e-06 28.5 0.7 2.1e-06 28.3 0.7 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|134045815|ref|YP_001097301.1| - 1.3e-05 25.0 0.1 2e-05 24.5 0.1 1.2 1 0 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system YafQ_toxin PF15738.5 gi|134045815|ref|YP_001097301.1| - 0.00074 19.8 1.7 0.0014 18.9 1.7 1.5 1 1 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ hnRNP_Q_AcD PF18360.1 gi|134045815|ref|YP_001097301.1| - 0.048 13.6 0.0 0.074 13.0 0.0 1.2 1 0 0 1 1 1 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain DUF2711 PF10924.8 gi|134045815|ref|YP_001097301.1| - 0.055 13.1 0.0 0.057 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2711) DUF4041 PF13250.6 gi|134045816|ref|YP_001097302.1| - 3.7e-21 74.8 7.6 7e-21 73.9 3.9 3.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4041) T5orf172 PF10544.9 gi|134045816|ref|YP_001097302.1| - 4.2e-15 56.2 0.0 4.2e-15 56.2 0.0 2.4 2 1 0 2 2 2 1 T5orf172 domain MUG113 PF13455.6 gi|134045816|ref|YP_001097302.1| - 1.3e-14 54.6 0.5 6.8e-14 52.3 0.1 2.4 2 0 0 2 2 2 1 Meiotically up-regulated gene 113 DUF1664 PF07889.12 gi|134045816|ref|YP_001097302.1| - 0.016 15.2 4.8 0.016 15.2 4.8 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF3095 PF11294.8 gi|134045816|ref|YP_001097302.1| - 0.33 10.0 4.5 0.6 9.1 4.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3095) DivIC PF04977.15 gi|134045817|ref|YP_001097303.1| - 0.0012 18.6 1.5 0.0012 18.6 1.5 3.6 1 1 2 3 3 3 1 Septum formation initiator bZIP_2 PF07716.15 gi|134045817|ref|YP_001097303.1| - 0.078 13.1 3.2 0.078 13.1 3.2 4.1 1 1 2 3 3 3 0 Basic region leucine zipper DUF4477 PF14780.6 gi|134045817|ref|YP_001097303.1| - 0.13 11.9 5.9 0.2 11.3 5.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4477) Prefoldin_2 PF01920.20 gi|134045817|ref|YP_001097303.1| - 0.53 10.3 26.5 0.41 10.6 6.7 3.1 1 1 2 3 3 3 0 Prefoldin subunit DUF4110 PF13422.6 gi|134045817|ref|YP_001097303.1| - 0.64 10.1 12.7 0.073 13.2 7.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4110) TMF_TATA_bd PF12325.8 gi|134045817|ref|YP_001097303.1| - 0.84 9.9 23.1 0.09 13.0 15.4 2.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Spc7 PF08317.11 gi|134045817|ref|YP_001097303.1| - 1.5 7.6 23.4 1.9 7.3 23.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein APG6_N PF17675.1 gi|134045817|ref|YP_001097303.1| - 5.2 7.6 26.6 0.68 10.5 14.1 2.3 1 1 1 2 2 2 0 Apg6 coiled-coil region E2F_CC-MB PF16421.5 gi|134045817|ref|YP_001097303.1| - 8.2 6.9 18.2 1.4 9.3 1.8 2.3 2 1 0 2 2 2 0 E2F transcription factor CC-MB domain ZapB PF06005.12 gi|134045817|ref|YP_001097303.1| - 9.7 6.7 34.6 0.2 12.1 7.1 3.4 1 1 2 3 3 3 0 Cell division protein ZapB CoA_binding PF02629.19 gi|134045819|ref|YP_001097305.1| - 2.6e-26 92.1 0.3 2.6e-26 92.1 0.3 2.3 3 0 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.19 gi|134045819|ref|YP_001097305.1| - 8.8e-18 64.6 0.8 1.4e-17 63.9 0.8 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|134045819|ref|YP_001097305.1| - 1.1e-10 41.4 0.1 1.7e-10 40.8 0.1 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|134045819|ref|YP_001097305.1| - 0.00063 20.2 0.0 0.0015 19.0 0.0 1.6 1 0 0 1 1 1 1 CoA binding domain DUF1611_N PF17396.2 gi|134045819|ref|YP_001097305.1| - 0.1 12.9 0.0 0.7 10.2 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain Topoisom_bac PF01131.20 gi|134045820|ref|YP_001097306.1| - 5.8e-125 417.5 1.7 5.8e-125 417.5 1.7 1.9 2 0 0 2 2 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|134045820|ref|YP_001097306.1| - 1.7e-39 133.3 42.7 2.2e-17 62.5 5.9 4.8 5 0 0 5 5 5 3 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|134045820|ref|YP_001097306.1| - 2.5e-19 69.4 0.0 1.3e-18 67.1 0.0 2.3 1 0 0 1 1 1 1 Toprim domain DZR PF12773.7 gi|134045820|ref|YP_001097306.1| - 0.028 14.5 6.4 6.6 6.8 6.4 3.0 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|134045820|ref|YP_001097306.1| - 0.1 12.1 7.8 0.86 9.1 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|134045820|ref|YP_001097306.1| - 0.14 12.2 9.2 15 5.6 0.0 4.9 4 1 0 4 4 4 0 Ogr/Delta-like zinc finger GFA PF04828.14 gi|134045820|ref|YP_001097306.1| - 0.16 12.3 2.8 11 6.5 0.5 2.7 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_9 PF14369.6 gi|134045820|ref|YP_001097306.1| - 0.17 12.2 0.7 9.5 6.6 0.1 2.8 2 0 0 2 2 2 0 zinc-ribbon ADK_lid PF05191.14 gi|134045820|ref|YP_001097306.1| - 0.35 10.9 11.6 1.5 8.9 0.2 3.7 4 0 0 4 4 3 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.10 gi|134045820|ref|YP_001097306.1| - 0.44 10.7 12.6 2.4 8.3 0.6 3.8 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|134045820|ref|YP_001097306.1| - 0.47 10.3 9.2 4.6 7.1 0.2 3.9 3 0 0 3 3 3 0 zinc-ribbon domain DUF2688 PF10892.8 gi|134045820|ref|YP_001097306.1| - 0.72 9.4 4.5 0.31 10.5 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) DUF1272 PF06906.11 gi|134045820|ref|YP_001097306.1| - 1.4 9.1 10.4 12 6.1 0.2 3.8 3 1 0 3 3 3 0 Protein of unknown function (DUF1272) TF_Zn_Ribbon PF08271.12 gi|134045820|ref|YP_001097306.1| - 1.9 8.0 6.2 14 5.3 0.1 3.5 3 0 0 3 3 3 0 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|134045820|ref|YP_001097306.1| - 2.3 8.7 14.7 92 3.5 7.9 3.8 2 2 0 2 2 2 0 Restriction alleviation protein Lar zf-TFIIB PF13453.6 gi|134045820|ref|YP_001097306.1| - 3.2 7.1 7.8 11 5.5 0.2 3.5 3 0 0 3 3 3 0 Transcription factor zinc-finger A2L_zn_ribbon PF08792.10 gi|134045820|ref|YP_001097306.1| - 8.2 6.3 16.9 0.23 11.2 0.3 4.4 4 0 0 4 4 4 0 A2L zinc ribbon domain Pyr_redox_2 PF07992.14 gi|134045821|ref|YP_001097307.1| - 2.2e-45 155.2 0.7 2.4e-45 155.0 0.7 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|134045821|ref|YP_001097307.1| - 3.9e-30 105.2 4.1 1.5e-23 83.5 0.2 2.0 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|134045821|ref|YP_001097307.1| - 1.7e-11 44.5 8.2 3.5e-11 43.5 1.3 3.1 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|134045821|ref|YP_001097307.1| - 5.3e-10 39.0 2.0 5.5e-06 25.7 0.1 3.3 3 0 0 3 3 3 3 FAD binding domain HI0933_like PF03486.14 gi|134045821|ref|YP_001097307.1| - 1.3e-09 37.3 1.8 0.00013 20.8 0.5 3.2 3 0 0 3 3 3 3 HI0933-like protein FAD_oxidored PF12831.7 gi|134045821|ref|YP_001097307.1| - 1.6e-07 31.1 0.1 7.1e-05 22.3 0.0 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|134045821|ref|YP_001097307.1| - 1.9e-05 24.1 0.7 0.0055 16.0 0.2 2.3 2 0 0 2 2 2 2 Thi4 family NAD_binding_8 PF13450.6 gi|134045821|ref|YP_001097307.1| - 0.00011 22.3 0.1 0.0027 17.9 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|134045821|ref|YP_001097307.1| - 0.00022 20.5 0.0 0.15 11.1 0.0 2.5 2 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|134045821|ref|YP_001097307.1| - 0.00038 19.6 9.5 0.029 13.5 0.5 3.6 3 2 1 4 4 4 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|134045821|ref|YP_001097307.1| - 0.0014 18.0 0.0 0.0031 16.8 0.0 1.4 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|134045821|ref|YP_001097307.1| - 0.0036 16.9 0.2 0.067 12.8 0.1 2.7 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|134045821|ref|YP_001097307.1| - 0.0071 16.3 0.1 2.7 7.9 0.0 3.0 3 0 0 3 3 3 1 FAD-NAD(P)-binding IlvN PF07991.12 gi|134045821|ref|YP_001097307.1| - 0.011 15.4 0.1 0.019 14.5 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|134045821|ref|YP_001097307.1| - 0.063 12.6 0.3 6.2 6.0 0.1 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|134045821|ref|YP_001097307.1| - 0.22 10.3 0.8 12 4.6 0.2 2.1 2 0 0 2 2 2 0 Tryptophan halogenase XPA_C PF05181.12 gi|134045822|ref|YP_001097308.1| - 0.026 14.5 0.4 0.074 13.0 0.0 2.0 2 0 0 2 2 2 0 XPA protein C-terminus LIAS_N PF16881.5 gi|134045822|ref|YP_001097308.1| - 0.11 13.0 1.1 1.1 9.7 0.1 2.9 2 1 1 3 3 3 0 N-terminal domain of lipoyl synthase of Radical_SAM family DUF2193 PF09959.9 gi|134045823|ref|YP_001097309.1| - 1.9e-277 920.5 4.0 2.2e-277 920.4 4.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) DUF326 PF03860.16 gi|134045823|ref|YP_001097309.1| - 0.53 10.3 4.2 1.5 8.9 4.2 1.8 1 0 0 1 1 1 0 Domain of Unknown Function (DUF326) DUF2180 PF09947.9 gi|134045824|ref|YP_001097310.1| - 2.3e-36 123.6 5.0 2.6e-36 123.4 5.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Transp_Tc5_C PF04236.15 gi|134045824|ref|YP_001097310.1| - 0.045 14.1 2.6 0.045 14.1 2.6 1.6 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain Tnp_zf-ribbon_2 PF13842.6 gi|134045824|ref|YP_001097310.1| - 0.6 11.0 4.7 0.26 12.1 1.1 2.0 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon MIP PF00230.20 gi|134045825|ref|YP_001097311.1| - 3.7e-51 174.0 19.0 4.1e-51 173.9 19.0 1.0 1 0 0 1 1 1 1 Major intrinsic protein EMP24_GP25L PF01105.24 gi|134045826|ref|YP_001097312.1| - 0.005 16.8 0.9 0.006 16.5 0.9 1.1 1 0 0 1 1 1 1 emp24/gp25L/p24 family/GOLD Orf78 PF06024.12 gi|134045826|ref|YP_001097312.1| - 0.016 15.5 2.1 0.021 15.1 2.1 1.1 1 0 0 1 1 1 0 Orf78 (ac78) DUF2721 PF11026.8 gi|134045826|ref|YP_001097312.1| - 0.017 15.0 0.0 0.023 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) CLN3 PF02487.17 gi|134045826|ref|YP_001097312.1| - 0.026 13.6 0.5 0.029 13.4 0.5 1.1 1 0 0 1 1 1 0 CLN3 protein ABC2_membrane_3 PF12698.7 gi|134045826|ref|YP_001097312.1| - 0.028 13.5 0.8 0.031 13.4 0.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein MSC PF09402.10 gi|134045826|ref|YP_001097312.1| - 0.062 12.8 0.7 0.068 12.6 0.7 1.0 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain eIF-4B PF06273.11 gi|134045826|ref|YP_001097312.1| - 0.15 11.0 3.9 0.19 10.8 3.9 1.0 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B LapA_dom PF06305.11 gi|134045826|ref|YP_001097312.1| - 3.3 7.6 0.0 3.3 7.6 0.0 2.8 2 1 1 3 3 3 0 Lipopolysaccharide assembly protein A domain DivIC PF04977.15 gi|134045826|ref|YP_001097312.1| - 6.8 6.5 10.6 0.38 10.6 4.4 2.1 2 1 0 2 2 2 0 Septum formation initiator FmdE PF02663.14 gi|134045827|ref|YP_001097313.1| - 3.8e-41 140.2 0.1 4.8e-41 139.9 0.1 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|134045827|ref|YP_001097313.1| - 1.6e-08 34.4 0.3 2.5e-08 33.7 0.3 1.4 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.22 gi|134045827|ref|YP_001097313.1| - 0.0014 18.8 0.5 0.0032 17.7 0.5 1.6 1 0 0 1 1 1 1 LIM domain Zn-ribbon_8 PF09723.10 gi|134045827|ref|YP_001097313.1| - 0.018 15.2 0.6 0.043 13.9 0.6 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Diphthamide_syn PF01866.17 gi|134045827|ref|YP_001097313.1| - 0.02 14.4 0.0 0.025 14.0 0.0 1.1 1 0 0 1 1 1 0 Putative diphthamide synthesis protein Lipocalin_4 PF13648.6 gi|134045827|ref|YP_001097313.1| - 0.026 15.5 0.3 0.057 14.4 0.3 1.6 1 0 0 1 1 1 0 Lipocalin-like domain MID_pPIWI_RE PF18157.1 gi|134045827|ref|YP_001097313.1| - 0.14 12.4 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 MID domain of pPIWI_RE DUF4428 PF14471.6 gi|134045827|ref|YP_001097313.1| - 0.2 11.6 6.2 0.14 12.1 3.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Gin PF10764.9 gi|134045827|ref|YP_001097313.1| - 0.22 11.5 2.8 0.98 9.4 3.2 1.9 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin TP_methylase PF00590.20 gi|134045828|ref|YP_001097314.1| - 4e-47 160.9 0.0 4.5e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|134045828|ref|YP_001097314.1| - 0.1 12.9 0.3 0.32 11.3 0.3 1.8 1 1 0 1 1 1 0 Radical SAM superfamily CGI-121 PF08617.10 gi|134045829|ref|YP_001097315.1| - 2.2e-12 47.4 0.7 2.7e-12 47.1 0.7 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 RST PF12174.8 gi|134045829|ref|YP_001097315.1| - 0.048 13.6 0.2 0.12 12.4 0.2 1.6 1 0 0 1 1 1 0 RCD1-SRO-TAF4 (RST) plant domain Histidinol_dh PF00815.20 gi|134045830|ref|YP_001097316.1| - 1.4e-166 554.6 2.7 1.5e-166 554.4 2.7 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DUF2884 PF11101.8 gi|134045830|ref|YP_001097316.1| - 0.047 13.2 0.7 0.1 12.1 0.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2884) DUF1979 PF09322.10 gi|134045830|ref|YP_001097316.1| - 0.14 12.1 0.0 0.42 10.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1979) HutP PF09021.11 gi|134045830|ref|YP_001097316.1| - 0.18 12.2 2.2 0.22 11.8 0.6 1.9 2 0 0 2 2 2 0 HutP DUF948 PF06103.11 gi|134045831|ref|YP_001097317.1| - 0.0012 19.1 1.0 0.0016 18.6 1.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DNA_ligase_A_M PF01068.21 gi|134045832|ref|YP_001097318.1| - 1.1e-56 191.8 0.1 2.7e-56 190.4 0.1 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|134045832|ref|YP_001097318.1| - 1.1e-32 113.7 1.8 4.4e-32 111.8 1.3 2.1 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|134045832|ref|YP_001097318.1| - 4.8e-17 62.4 0.0 1.6e-16 60.7 0.0 2.0 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|134045832|ref|YP_001097318.1| - 5.6e-05 23.5 0.0 0.00011 22.6 0.0 1.4 1 0 0 1 1 1 1 RNA ligase Arc_PepC PF06819.11 gi|134045832|ref|YP_001097318.1| - 0.0015 18.6 0.2 0.0087 16.2 0.2 2.4 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminal Domain DUF1818 PF08848.11 gi|134045832|ref|YP_001097318.1| - 0.056 13.5 0.5 4.1 7.5 0.0 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF1818) BLOC1_2 PF10046.9 gi|134045832|ref|YP_001097318.1| - 0.35 11.2 2.9 23 5.4 0.1 3.7 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Lyase_1 PF00206.20 gi|134045833|ref|YP_001097319.1| - 1.7e-53 182.1 0.7 1.7e-53 182.1 0.7 1.4 2 0 0 2 2 2 1 Lyase ADSL_C PF10397.9 gi|134045833|ref|YP_001097319.1| - 6.8e-24 84.2 1.8 2.8e-23 82.2 0.1 2.7 3 0 0 3 3 3 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|134045833|ref|YP_001097319.1| - 4.3e-06 26.8 0.2 2.3e-05 24.5 0.1 2.3 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal FumaraseC_C PF10415.9 gi|134045833|ref|YP_001097319.1| - 0.0015 18.9 0.8 0.0069 16.8 0.1 2.4 2 0 0 2 2 2 1 Fumarase C C-terminus ASL_C2 PF14698.6 gi|134045833|ref|YP_001097319.1| - 0.0081 16.9 0.4 0.11 13.3 0.0 3.0 3 0 0 3 3 3 1 Argininosuccinate lyase C-terminal Spore_III_AF PF09581.10 gi|134045834|ref|YP_001097320.1| - 0.043 13.9 0.0 0.052 13.6 0.0 1.1 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) Imm17 PF15562.6 gi|134045834|ref|YP_001097320.1| - 0.39 10.6 3.5 0.33 10.9 1.5 1.8 2 0 0 2 2 2 0 Immunity protein 17 DUF166 PF02593.14 gi|134045835|ref|YP_001097321.1| - 2.1e-72 243.3 0.6 2.4e-72 243.0 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function Ribul_P_3_epim PF00834.19 gi|134045835|ref|YP_001097321.1| - 0.092 12.1 0.0 0.19 11.1 0.0 1.4 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family CbiA PF01656.23 gi|134045836|ref|YP_001097322.1| - 8.2e-23 80.9 0.3 1.3e-22 80.2 0.3 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|134045836|ref|YP_001097322.1| - 1.6e-12 47.7 0.8 5.3e-12 46.0 0.8 2.0 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|134045836|ref|YP_001097322.1| - 1.4e-09 37.8 5.8 8.8e-08 31.9 5.8 2.4 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|134045836|ref|YP_001097322.1| - 4.6e-09 35.9 2.9 5.6e-08 32.3 0.1 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|134045836|ref|YP_001097322.1| - 8.8e-09 35.2 7.1 0.00025 20.6 2.2 2.3 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|134045836|ref|YP_001097322.1| - 0.00022 20.8 0.0 0.18 11.3 0.0 2.3 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ AAA_24 PF13479.6 gi|134045836|ref|YP_001097322.1| - 0.00026 20.7 0.3 0.0056 16.4 0.1 2.3 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|134045836|ref|YP_001097322.1| - 0.0003 20.7 1.7 0.04 13.8 0.4 2.6 2 1 1 3 3 3 1 RsgA GTPase GTP_EFTU PF00009.27 gi|134045836|ref|YP_001097322.1| - 0.00036 20.1 0.7 0.014 14.9 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.17 gi|134045836|ref|YP_001097322.1| - 0.002 17.9 0.4 0.0069 16.2 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein DeoC PF01791.9 gi|134045836|ref|YP_001097322.1| - 0.003 17.2 0.2 0.0062 16.2 0.2 1.5 1 0 0 1 1 1 1 DeoC/LacD family aldolase CmcI PF04989.12 gi|134045836|ref|YP_001097322.1| - 0.0038 16.9 0.4 0.071 12.8 0.2 2.1 2 0 0 2 2 2 1 Cephalosporin hydroxylase CLP1_P PF16575.5 gi|134045836|ref|YP_001097322.1| - 0.018 14.8 0.5 0.66 9.7 0.0 2.6 2 1 1 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MMR_HSR1 PF01926.23 gi|134045836|ref|YP_001097322.1| - 0.018 15.1 0.4 5 7.2 0.1 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase Diphthami_syn_2 PF01902.17 gi|134045836|ref|YP_001097322.1| - 0.019 14.5 0.8 0.033 13.7 0.8 1.3 1 0 0 1 1 1 0 Diphthamide synthase NTPase_1 PF03266.15 gi|134045836|ref|YP_001097322.1| - 0.025 14.5 3.4 0.033 14.1 0.2 2.2 2 0 0 2 2 2 0 NTPase AAA_26 PF13500.6 gi|134045836|ref|YP_001097322.1| - 0.026 14.3 2.9 0.063 13.1 0.3 2.7 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|134045836|ref|YP_001097322.1| - 0.036 14.6 0.0 0.075 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain Diphthamide_syn PF01866.17 gi|134045836|ref|YP_001097322.1| - 0.037 13.5 0.6 0.079 12.4 0.3 1.7 2 0 0 2 2 2 0 Putative diphthamide synthesis protein SRP54 PF00448.22 gi|134045836|ref|YP_001097322.1| - 0.038 13.6 1.6 0.17 11.5 0.1 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Methyltransf_32 PF13679.6 gi|134045836|ref|YP_001097322.1| - 0.053 13.5 0.1 0.44 10.5 0.1 2.0 2 0 0 2 2 2 0 Methyltransferase domain PRK PF00485.18 gi|134045836|ref|YP_001097322.1| - 0.079 12.7 0.1 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|134045836|ref|YP_001097322.1| - 0.18 12.2 0.0 0.27 11.6 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|134045836|ref|YP_001097322.1| - 0.19 11.4 2.8 3.5 7.3 2.8 2.1 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|134045836|ref|YP_001097322.1| - 0.23 11.1 3.7 1.5 8.4 3.7 2.1 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.17 gi|134045836|ref|YP_001097322.1| - 4.3 7.4 10.0 11 6.1 1.6 2.5 2 2 0 2 2 2 0 Helicase HerA, central domain CooT PF10133.9 gi|134045837|ref|YP_001097323.1| - 9.9e-19 67.4 2.2 1.1e-18 67.3 2.2 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT STT3_PglB_C PF18527.1 gi|134045837|ref|YP_001097323.1| - 0.009 16.1 0.7 0.028 14.5 0.7 1.7 1 1 0 1 1 1 1 STT3/PglB C-terminal beta-barrel domain Gemin7 PF11095.8 gi|134045837|ref|YP_001097323.1| - 0.064 13.2 0.0 0.072 13.0 0.0 1.2 1 0 0 1 1 1 0 Gem-associated protein 7 (Gemin7) Fer4 PF00037.27 gi|134045838|ref|YP_001097324.1| - 8.3e-12 44.4 36.5 5.8e-08 32.2 1.7 5.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_11 PF13247.6 gi|134045838|ref|YP_001097324.1| - 2.8e-11 43.4 13.6 2.8e-11 43.4 13.6 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045838|ref|YP_001097324.1| - 4.7e-11 42.6 32.0 2.6e-07 30.7 8.8 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045838|ref|YP_001097324.1| - 9.9e-11 42.1 26.3 0.0027 18.3 11.3 4.1 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134045838|ref|YP_001097324.1| - 1.4e-09 37.6 33.4 1.5e-06 28.0 1.8 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134045838|ref|YP_001097324.1| - 8.5e-09 35.0 28.8 0.00075 19.4 1.6 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134045838|ref|YP_001097324.1| - 4.6e-08 33.1 30.7 0.00036 20.6 9.8 3.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|134045838|ref|YP_001097324.1| - 8e-06 26.4 38.6 0.018 15.9 3.2 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|134045838|ref|YP_001097324.1| - 8.8e-06 26.6 25.3 0.59 11.1 5.7 4.5 4 1 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|134045838|ref|YP_001097324.1| - 8.8e-06 25.8 33.4 0.0039 17.3 12.3 3.4 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134045838|ref|YP_001097324.1| - 0.015 15.7 0.9 0.015 15.7 0.9 4.5 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|134045838|ref|YP_001097324.1| - 0.43 11.1 35.5 0.34 11.4 2.8 4.2 2 2 1 3 3 3 0 4Fe-4S dicluster domain CdhD PF03599.16 gi|134045839|ref|YP_001097325.1| - 6.4e-147 489.3 0.4 7.5e-147 489.1 0.4 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|134045839|ref|YP_001097325.1| - 1.1e-15 56.9 3.9 3.1e-15 55.5 3.9 1.8 1 0 0 1 1 1 1 Putative Fe-S cluster Radical_SAM PF04055.21 gi|134045839|ref|YP_001097325.1| - 0.056 13.8 0.1 3.4 8.0 0.1 3.1 2 1 0 2 2 2 0 Radical SAM superfamily CdhD PF03599.16 gi|134045840|ref|YP_001097326.1| - 2.5e-86 289.8 1.5 7e-83 278.5 0.1 3.1 1 1 1 2 2 2 2 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF5643 PF18705.1 gi|134045840|ref|YP_001097326.1| - 0.039 13.9 3.1 0.23 11.5 0.3 2.6 3 0 0 3 3 3 0 Family of unknown function (DUF5643) CbiA PF01656.23 gi|134045841|ref|YP_001097327.1| - 3.7e-18 65.8 0.2 5.4e-18 65.3 0.2 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|134045841|ref|YP_001097327.1| - 7.8e-16 58.5 0.4 1.1e-15 58.0 0.4 1.2 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|134045841|ref|YP_001097327.1| - 5.9e-11 42.1 1.4 1.8e-10 40.5 1.4 2.0 1 1 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|134045841|ref|YP_001097327.1| - 3.2e-07 30.0 3.0 1.8e-06 27.6 3.0 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|134045841|ref|YP_001097327.1| - 3.6e-07 29.9 0.0 6.6e-06 25.8 0.0 2.1 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|134045841|ref|YP_001097327.1| - 1.5e-06 27.9 0.2 0.00024 20.7 0.1 2.2 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|134045841|ref|YP_001097327.1| - 5.5e-05 22.6 0.4 0.035 13.4 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ NTPase_1 PF03266.15 gi|134045841|ref|YP_001097327.1| - 7.1e-05 22.8 0.7 0.13 12.2 0.0 2.3 2 0 0 2 2 2 2 NTPase TrkA_N PF02254.18 gi|134045841|ref|YP_001097327.1| - 0.00046 20.4 1.2 1 9.6 0.2 2.7 2 1 0 2 2 2 2 TrkA-N domain AAA_24 PF13479.6 gi|134045841|ref|YP_001097327.1| - 0.00078 19.2 0.0 0.0026 17.5 0.0 1.8 1 1 1 2 2 2 2 AAA domain AAA PF00004.29 gi|134045841|ref|YP_001097327.1| - 0.028 14.8 0.2 0.11 12.9 0.1 2.1 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|134045841|ref|YP_001097327.1| - 0.028 13.6 1.3 0.11 11.6 0.7 1.9 2 0 0 2 2 2 0 NB-ARC domain DUF87 PF01935.17 gi|134045841|ref|YP_001097327.1| - 0.033 14.3 3.4 0.16 12.0 2.6 2.1 1 1 1 2 2 2 0 Helicase HerA, central domain AAA_16 PF13191.6 gi|134045841|ref|YP_001097327.1| - 0.036 14.5 0.0 0.047 14.1 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 gi|134045841|ref|YP_001097327.1| - 0.041 12.9 0.4 0.081 11.9 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|134045841|ref|YP_001097327.1| - 0.057 13.9 0.2 0.088 13.3 0.1 1.6 1 1 0 1 1 1 0 ABC transporter AAA_14 PF13173.6 gi|134045841|ref|YP_001097327.1| - 0.1 12.7 0.1 0.31 11.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain Toprim_4 PF13662.6 gi|134045841|ref|YP_001097327.1| - 0.11 13.0 0.0 0.27 11.7 0.0 1.8 1 0 0 1 1 1 0 Toprim domain HTH_10 PF04967.12 gi|134045841|ref|YP_001097327.1| - 0.11 12.3 0.0 0.37 10.6 0.0 1.8 2 0 0 2 2 1 0 HTH DNA binding domain MMR_HSR1 PF01926.23 gi|134045841|ref|YP_001097327.1| - 1.1 9.4 3.4 10 6.2 3.4 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_26 PF13500.6 gi|134045841|ref|YP_001097327.1| - 1.3 8.8 4.7 22 4.8 0.3 2.8 2 1 0 2 2 2 0 AAA domain CdhC PF03598.15 gi|134045842|ref|YP_001097328.1| - 8.4e-63 210.9 0.2 1.2e-62 210.3 0.2 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit DUF4795 PF16043.5 gi|134045842|ref|YP_001097328.1| - 0.11 12.1 0.4 0.23 11.1 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) Rep_2 PF01719.17 gi|134045842|ref|YP_001097328.1| - 0.13 12.1 0.9 0.69 9.7 0.1 2.1 2 0 0 2 2 2 0 Plasmid replication protein CO_dh PF02552.16 gi|134045843|ref|YP_001097329.1| - 4.6e-50 169.7 0.0 5.5e-50 169.4 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|134045843|ref|YP_001097329.1| - 4e-06 26.6 0.0 1.2e-05 25.0 0.0 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.20 gi|134045844|ref|YP_001097330.1| - 9.4e-96 321.5 8.4 1.1e-81 275.1 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_9 PF13187.6 gi|134045844|ref|YP_001097330.1| - 1.1e-06 28.7 9.5 1.1e-06 28.7 9.5 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045844|ref|YP_001097330.1| - 1.7e-05 25.3 9.7 1.7e-05 25.3 9.7 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045844|ref|YP_001097330.1| - 5.3e-05 23.2 9.5 5.3e-05 23.2 9.5 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134045844|ref|YP_001097330.1| - 0.0026 18.3 12.0 0.0026 18.3 12.0 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|134045844|ref|YP_001097330.1| - 0.0032 17.2 4.8 0.0032 17.2 4.8 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|134045844|ref|YP_001097330.1| - 0.0055 17.1 13.0 0.0055 17.1 13.0 3.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain CODH_A_N PF18537.1 gi|134045844|ref|YP_001097330.1| - 0.022 14.8 0.0 0.055 13.5 0.0 1.7 1 0 0 1 1 1 0 Carbon monoxide dehydrogenase subunit alpha N-terminal domain Fer4_4 PF12800.7 gi|134045844|ref|YP_001097330.1| - 0.029 14.9 11.1 0.21 12.2 2.3 3.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|134045844|ref|YP_001097330.1| - 0.13 13.1 0.3 0.13 13.1 0.3 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain RrnaAD PF00398.20 gi|134045845|ref|YP_001097331.1| - 1.4e-55 188.2 1.4 1.7e-55 187.9 1.4 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|134045845|ref|YP_001097331.1| - 0.00023 21.8 0.0 0.00054 20.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|134045845|ref|YP_001097331.1| - 0.0012 18.7 0.1 0.0015 18.3 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|134045845|ref|YP_001097331.1| - 0.0013 18.1 0.1 0.0021 17.3 0.1 1.3 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain NodS PF05401.11 gi|134045845|ref|YP_001097331.1| - 0.0019 17.9 0.0 0.0029 17.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_23 PF13489.6 gi|134045845|ref|YP_001097331.1| - 0.0048 16.8 0.0 0.013 15.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|134045845|ref|YP_001097331.1| - 0.0054 17.3 0.0 0.011 16.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|134045845|ref|YP_001097331.1| - 0.015 14.4 0.3 0.054 12.6 0.0 2.0 3 0 0 3 3 3 0 DREV methyltransferase SMC_Nse1 PF07574.13 gi|134045845|ref|YP_001097331.1| - 0.019 14.9 0.1 0.04 13.8 0.1 1.5 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex MTS PF05175.14 gi|134045845|ref|YP_001097331.1| - 0.02 14.5 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|134045845|ref|YP_001097331.1| - 0.058 12.9 0.2 0.21 11.0 0.0 2.0 2 1 1 3 3 3 0 Putative methyltransferase Spore_III_AB PF09548.10 gi|134045845|ref|YP_001097331.1| - 0.1 12.7 0.1 11 6.1 0.0 2.2 2 0 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) PrmA PF06325.13 gi|134045846|ref|YP_001097332.1| - 9.6e-08 31.8 0.1 1.6e-07 31.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|134045846|ref|YP_001097332.1| - 1.8e-07 31.0 0.0 2.7e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|134045846|ref|YP_001097332.1| - 5.5e-05 23.0 0.1 0.00019 21.2 0.1 1.8 1 1 0 1 1 1 1 Met-10+ like-protein N6_N4_Mtase PF01555.18 gi|134045846|ref|YP_001097332.1| - 0.00089 19.0 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 DNA methylase MTS PF05175.14 gi|134045846|ref|YP_001097332.1| - 0.0014 18.2 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MethyltransfD12 PF02086.15 gi|134045846|ref|YP_001097332.1| - 0.0021 17.8 0.1 0.0033 17.1 0.1 1.3 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_25 PF13649.6 gi|134045846|ref|YP_001097332.1| - 0.0029 18.3 0.0 0.006 17.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|134045846|ref|YP_001097332.1| - 0.0031 16.7 0.1 0.0031 16.7 0.1 1.4 2 0 0 2 2 2 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.6 gi|134045846|ref|YP_001097332.1| - 0.043 13.6 0.1 0.08 12.7 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|134045846|ref|YP_001097332.1| - 0.048 13.2 0.1 0.098 12.2 0.1 1.5 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|134045846|ref|YP_001097332.1| - 0.1 12.5 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Topo-VIb_trans PF09239.11 gi|134045847|ref|YP_001097333.1| - 4.6e-54 182.5 0.0 9.7e-54 181.5 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|134045847|ref|YP_001097333.1| - 7.4e-12 45.8 0.1 1.8e-11 44.6 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|134045847|ref|YP_001097333.1| - 5.8e-09 35.9 0.0 1.4e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lip_prot_lig_C PF10437.9 gi|134045847|ref|YP_001097333.1| - 0.032 14.2 0.4 0.13 12.3 0.4 2.1 1 0 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus XPA_C PF05181.12 gi|134045847|ref|YP_001097333.1| - 0.11 12.4 2.2 0.15 12.0 0.1 2.3 2 0 0 2 2 2 0 XPA protein C-terminus HATPase_c_2 PF13581.6 gi|134045847|ref|YP_001097333.1| - 0.13 12.2 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain tRNA_deacylase PF04414.12 gi|134045848|ref|YP_001097334.1| - 7.3e-68 228.1 0.1 1.7e-67 226.9 0.0 1.5 1 1 1 2 2 2 1 D-aminoacyl-tRNA deacylase AIRC PF00731.20 gi|134045849|ref|YP_001097335.1| - 9.5e-18 64.2 1.4 1.6e-17 63.5 1.0 1.5 2 0 0 2 2 2 1 AIR carboxylase DUF2226 PF09987.9 gi|134045850|ref|YP_001097336.1| - 3.9e-21 75.7 32.6 5.6e-18 65.3 20.6 4.1 2 1 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2226) V-ATPase_G PF03179.15 gi|134045850|ref|YP_001097336.1| - 0.019 15.5 4.3 0.019 15.5 4.3 2.3 2 1 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit AbiJ_NTD3 PF18860.1 gi|134045850|ref|YP_001097336.1| - 0.052 13.1 0.4 0.15 11.6 0.4 1.8 1 0 0 1 1 1 0 AbiJ N-terminal domain 3 AHH PF14412.6 gi|134045850|ref|YP_001097336.1| - 0.091 12.8 0.6 0.21 11.6 0.6 1.6 1 0 0 1 1 1 0 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH TM1586_NiRdase PF14512.6 gi|134045850|ref|YP_001097336.1| - 0.66 9.5 4.1 1.5 8.4 0.6 2.8 2 1 1 3 3 3 0 Putative TM nitroreductase HTH_3 PF01381.22 gi|134045852|ref|YP_001097338.1| - 2e-16 59.7 0.1 2.3e-16 59.6 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|134045852|ref|YP_001097338.1| - 4.4e-09 36.2 0.1 4.8e-09 36.1 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|134045852|ref|YP_001097338.1| - 8.3e-08 32.6 0.0 9.2e-08 32.4 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 gi|134045852|ref|YP_001097338.1| - 2.8e-06 27.6 0.0 3.1e-06 27.4 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|134045852|ref|YP_001097338.1| - 0.00086 18.8 0.2 0.0013 18.2 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 MqsA_antitoxin PF15731.5 gi|134045852|ref|YP_001097338.1| - 0.0027 17.8 0.0 0.0028 17.8 0.0 1.1 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_Crp_2 PF13545.6 gi|134045852|ref|YP_001097338.1| - 0.0031 17.5 0.0 0.0044 17.0 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LBP_M PF17385.2 gi|134045852|ref|YP_001097338.1| - 0.052 13.1 0.0 0.058 12.9 0.0 1.0 1 0 0 1 1 1 0 Lacto-N-biose phosphorylase central domain Na_H_Exchanger PF00999.21 gi|134045853|ref|YP_001097339.1| - 3.9e-05 22.6 3.3 4.2e-05 22.5 3.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF4133 PF13571.6 gi|134045853|ref|YP_001097339.1| - 0.081 13.3 0.7 0.081 13.3 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4133) YtpI PF14007.6 gi|134045853|ref|YP_001097339.1| - 0.14 12.3 11.8 1 9.5 2.6 2.2 1 1 1 2 2 2 0 YtpI-like protein MitoNEET_N PF10660.9 gi|134045853|ref|YP_001097339.1| - 1.3 9.1 4.3 11 6.1 0.1 2.8 3 0 0 3 3 3 0 Iron-containing outer mitochondrial membrane protein N-terminus RDD PF06271.12 gi|134045853|ref|YP_001097339.1| - 2.6 8.3 12.8 4.9 7.3 4.7 2.1 2 0 0 2 2 2 0 RDD family Phtf-FEM1B_bdg PF12129.8 gi|134045854|ref|YP_001097340.1| - 0.0092 15.8 1.1 0.013 15.3 1.1 1.2 1 0 0 1 1 1 1 Male germ-cell putative homeodomain transcription factor FA_desaturase PF00487.24 gi|134045854|ref|YP_001097340.1| - 2 8.2 7.9 6.5 6.5 7.9 1.7 1 1 0 1 1 1 0 Fatty acid desaturase HypA PF01155.19 gi|134045855|ref|YP_001097341.1| - 0.028 14.5 0.8 0.03 14.3 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RecR PF02132.15 gi|134045855|ref|YP_001097341.1| - 0.08 12.5 0.9 0.1 12.2 0.9 1.3 1 0 0 1 1 1 0 RecR protein Copper-bind PF00127.20 gi|134045856|ref|YP_001097342.1| - 1.2e-08 35.3 0.5 2.8e-07 30.9 0.5 2.0 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|134045856|ref|YP_001097342.1| - 1.2e-05 25.3 0.0 1.6e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Thioredoxin_3 PF13192.6 gi|134045857|ref|YP_001097343.1| - 4.4e-23 81.1 2.6 4.7e-23 81.0 2.6 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|134045857|ref|YP_001097343.1| - 0.003 17.7 0.1 0.0034 17.6 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin PTS_IIB PF02302.17 gi|134045857|ref|YP_001097343.1| - 0.0043 17.7 0.5 0.005 17.5 0.5 1.1 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit DUF498 PF04430.14 gi|134045857|ref|YP_001097343.1| - 0.034 14.2 0.0 0.05 13.7 0.0 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) TFA2_Winged_2 PF18121.1 gi|134045857|ref|YP_001097343.1| - 0.066 12.9 0.4 0.093 12.4 0.1 1.5 2 0 0 2 2 2 0 TFA2 Winged helix domain 2 ArsP_1 PF03773.13 gi|134045858|ref|YP_001097344.1| - 3.8e-74 249.5 20.6 4.4e-74 249.3 20.6 1.0 1 0 0 1 1 1 1 Predicted permease CM2 PF03021.14 gi|134045858|ref|YP_001097344.1| - 0.047 13.5 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 Influenza C virus M2 protein UPF0154 PF03672.13 gi|134045858|ref|YP_001097344.1| - 2.6 8.1 5.3 0.6 10.2 0.5 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) CobN-Mg_chel PF02514.16 gi|134045859|ref|YP_001097345.1| - 0 1092.9 1.5 0 1084.0 1.0 2.1 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DUF1524 PF07510.11 gi|134045859|ref|YP_001097345.1| - 0.032 14.1 0.1 0.08 12.8 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1524) LPD3 PF18798.1 gi|134045860|ref|YP_001097346.1| - 0.054 13.7 0.1 0.33 11.2 0.0 2.2 2 0 0 2 2 2 0 Large polyvalent protein-associated domain 3 LptF_LptG PF03739.14 gi|134045860|ref|YP_001097346.1| - 0.089 11.6 0.3 0.11 11.3 0.3 1.1 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG Methyltransf_31 PF13847.6 gi|134045861|ref|YP_001097347.1| - 2.7e-16 59.7 0.0 4e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|134045861|ref|YP_001097347.1| - 1.8e-14 54.2 0.0 2.6e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|134045861|ref|YP_001097347.1| - 5.2e-14 52.7 0.0 7.5e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|134045861|ref|YP_001097347.1| - 1.6e-12 47.2 0.1 3.4e-12 46.2 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|134045861|ref|YP_001097347.1| - 4.5e-07 30.5 0.0 7.3e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|134045861|ref|YP_001097347.1| - 3.3e-06 27.0 0.0 1.2e-05 25.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|134045861|ref|YP_001097347.1| - 9.6e-05 22.3 0.0 0.00017 21.5 0.0 1.5 1 0 0 1 1 1 1 Hypothetical methyltransferase PrmA PF06325.13 gi|134045861|ref|YP_001097347.1| - 0.063 12.7 0.0 0.082 12.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 gi|134045861|ref|YP_001097347.1| - 0.17 11.4 0.0 0.32 10.6 0.0 1.4 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|134045861|ref|YP_001097347.1| - 0.21 10.1 0.0 0.29 9.6 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase ArsP_1 PF03773.13 gi|134045862|ref|YP_001097348.1| - 3.6e-10 39.5 12.7 4.2e-10 39.3 12.7 1.0 1 0 0 1 1 1 1 Predicted permease ArsP_1 PF03773.13 gi|134045863|ref|YP_001097349.1| - 0.00014 21.1 11.1 0.00014 21.1 11.1 1.6 1 1 0 1 1 1 1 Predicted permease DUF1418 PF07214.12 gi|134045863|ref|YP_001097349.1| - 1.4 8.8 5.7 0.3 11.0 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1418) YbhQ PF11076.8 gi|134045863|ref|YP_001097349.1| - 2.7 8.0 9.6 4.1 7.4 0.8 2.6 2 1 0 2 2 2 0 Putative inner membrane protein YbhQ Nitro_FeMo-Co PF02579.17 gi|134045864|ref|YP_001097350.1| - 2.8e-11 43.6 0.0 3.1e-11 43.4 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Sacchrp_dh_NADP PF03435.18 gi|134045864|ref|YP_001097350.1| - 0.17 12.2 0.1 0.23 11.7 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Cpn60_TCP1 PF00118.24 gi|134045865|ref|YP_001097351.1| - 0.0025 16.5 1.1 0.42 9.2 0.0 2.1 2 0 0 2 2 2 2 TCP-1/cpn60 chaperonin family EVE PF01878.18 gi|134045865|ref|YP_001097351.1| - 0.056 13.5 0.1 0.18 11.8 0.0 1.9 2 0 0 2 2 2 0 EVE domain LCM PF04072.14 gi|134045866|ref|YP_001097352.1| - 1.7e-46 158.5 0.0 2.5e-46 158.0 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase DUF3864 PF12980.7 gi|134045866|ref|YP_001097352.1| - 0.036 14.4 0.4 12 6.3 0.1 2.7 2 1 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3864) Prenyltrans PF00432.21 gi|134045867|ref|YP_001097353.1| - 5.3e-08 32.5 1.6 0.12 12.2 0.0 4.4 4 0 0 4 4 4 2 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_C PF13243.6 gi|134045867|ref|YP_001097353.1| - 1e-07 31.4 1.2 1e-07 31.4 1.2 2.9 2 1 1 3 3 3 2 Squalene-hopene cyclase C-terminal domain TED_complement PF07678.14 gi|134045867|ref|YP_001097353.1| - 0.00038 19.6 0.0 0.13 11.3 0.0 2.3 2 0 0 2 2 2 2 A-macroglobulin TED domain SQHop_cyclase_N PF13249.6 gi|134045867|ref|YP_001097353.1| - 0.00047 19.4 0.3 7 5.7 0.0 3.3 3 1 0 3 3 3 3 Squalene-hopene cyclase N-terminal domain YitT_membrane PF02588.15 gi|134045868|ref|YP_001097354.1| - 0.0012 18.3 6.1 0.0012 18.3 6.1 2.2 1 1 0 2 2 2 2 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Ly49 PF08391.10 gi|134045869|ref|YP_001097355.1| - 0.18 12.2 4.4 1.5 9.2 0.3 2.4 2 1 0 2 2 2 0 Ly49-like protein, N-terminal region DUF5533 PF17685.1 gi|134045870|ref|YP_001097356.1| - 0.13 12.6 5.0 0.15 12.5 5.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5533) Trypsin_2 PF13365.6 gi|134045871|ref|YP_001097357.1| - 1.1e-15 58.9 0.0 1.3e-15 58.6 0.0 1.1 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|134045871|ref|YP_001097357.1| - 3.8e-09 36.7 0.0 5.4e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Trypsin HGD-D PF06050.13 gi|134045872|ref|YP_001097358.1| - 9.7e-87 291.7 0.3 1.1e-86 291.5 0.3 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component 5_3_exonuc PF01367.20 gi|134045872|ref|YP_001097358.1| - 0.0021 18.6 1.1 0.0071 16.9 0.0 2.3 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold SAM_2 PF07647.17 gi|134045872|ref|YP_001097358.1| - 0.025 14.7 0.0 0.059 13.5 0.0 1.6 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) dsDNA_bind PF01984.20 gi|134045872|ref|YP_001097358.1| - 0.076 13.3 0.7 0.8 10.0 0.0 2.4 2 0 0 2 2 2 0 Double-stranded DNA-binding domain Erf4 PF10256.9 gi|134045872|ref|YP_001097358.1| - 0.085 13.0 0.4 0.4 10.8 0.0 2.2 2 0 0 2 2 2 0 Golgin subfamily A member 7/ERF4 family MFS_1 PF07690.16 gi|134045873|ref|YP_001097359.1| - 2.4e-43 148.4 44.4 2.4e-43 148.4 44.4 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily OAD_gamma PF04277.13 gi|134045873|ref|YP_001097359.1| - 0.049 14.2 0.0 0.049 14.2 0.0 3.5 4 0 0 4 4 4 0 Oxaloacetate decarboxylase, gamma chain URO-D PF01208.17 gi|134045874|ref|YP_001097360.1| - 1.4e-31 109.9 0.0 3.2e-31 108.7 0.0 1.5 1 1 1 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) RACo_C_ter PF14574.6 gi|134045875|ref|YP_001097361.1| - 6e-73 245.1 2.4 9.7e-73 244.4 2.4 1.3 1 0 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|134045875|ref|YP_001097361.1| - 4.6e-60 202.0 2.7 5.3e-60 201.8 0.7 2.0 2 0 0 2 2 2 1 RACo middle region Fer2 PF00111.27 gi|134045875|ref|YP_001097361.1| - 4.9e-11 42.4 0.1 1e-10 41.4 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF228 PF02989.14 gi|134045875|ref|YP_001097361.1| - 0.038 13.8 0.7 0.08 12.7 0.1 1.9 2 0 0 2 2 2 0 Lyme disease proteins of unknown function Parvo_NS1 PF01057.17 gi|134045875|ref|YP_001097361.1| - 0.072 12.2 0.2 0.14 11.3 0.2 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 URO-D PF01208.17 gi|134045876|ref|YP_001097362.1| - 2.1e-83 280.4 0.0 2.3e-83 280.2 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) URO-D PF01208.17 gi|134045877|ref|YP_001097363.1| - 1.9e-85 287.1 0.0 2.1e-85 286.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Sulf_coat_C PF12193.8 gi|134045877|ref|YP_001097363.1| - 0.16 12.1 0.0 0.39 10.8 0.0 1.6 1 0 0 1 1 1 0 Sulfolobus virus coat protein C terminal B12-binding PF02310.19 gi|134045878|ref|YP_001097364.1| - 5.6e-23 81.3 0.1 8.4e-23 80.7 0.1 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|134045878|ref|YP_001097364.1| - 8.5e-16 58.2 0.1 2.2e-15 56.8 0.0 1.8 2 0 0 2 2 2 1 B12 binding domain MCPsignal PF00015.21 gi|134045879|ref|YP_001097365.1| - 3.7e-34 118.0 50.7 2.4e-32 112.1 13.7 5.3 3 2 2 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain sCache_3_3 PF17202.4 gi|134045879|ref|YP_001097365.1| - 4.5e-26 91.4 2.6 6.3e-26 90.9 0.3 2.6 2 0 0 2 2 1 1 Single cache domain 3 dCache_3 PF14827.6 gi|134045879|ref|YP_001097365.1| - 3e-20 72.9 0.2 3e-20 72.9 0.2 2.2 2 0 0 2 2 2 1 Double sensory domain of two-component sensor kinase Cache_3-Cache_2 PF17201.4 gi|134045879|ref|YP_001097365.1| - 9.9e-19 67.7 1.2 9.9e-19 67.7 1.2 3.8 2 2 1 3 3 3 1 Cache 3/Cache 2 fusion domain HAMP PF00672.25 gi|134045879|ref|YP_001097365.1| - 6.8e-14 52.0 0.2 1.1e-08 35.3 0.0 4.5 5 1 0 5 5 3 2 HAMP domain DUF948 PF06103.11 gi|134045879|ref|YP_001097365.1| - 1.2e-07 31.9 39.2 0.052 13.8 3.8 6.8 2 2 3 5 5 5 4 Bacterial protein of unknown function (DUF948) sCache_3_2 PF17203.4 gi|134045879|ref|YP_001097365.1| - 2.7e-06 27.5 0.1 2.7e-06 27.5 0.1 4.4 5 1 0 5 5 5 1 Single cache domain 3 DASH_Dad1 PF08649.10 gi|134045879|ref|YP_001097365.1| - 5.9e-05 23.2 6.9 0.1 12.8 0.1 4.3 3 0 0 3 3 3 2 DASH complex subunit Dad1 DUF1664 PF07889.12 gi|134045879|ref|YP_001097365.1| - 0.0099 15.9 32.1 0.11 12.6 0.7 5.6 3 1 2 5 5 5 1 Protein of unknown function (DUF1664) WXG100 PF06013.12 gi|134045879|ref|YP_001097365.1| - 0.023 14.9 19.0 4.4 7.6 0.0 5.7 5 1 1 6 6 5 0 Proteins of 100 residues with WXG Transcrip_act PF04949.13 gi|134045879|ref|YP_001097365.1| - 0.027 14.3 0.1 0.027 14.3 0.1 4.6 2 1 3 5 5 5 0 Transcriptional activator Collagen_mid PF15984.5 gi|134045879|ref|YP_001097365.1| - 0.04 13.7 0.2 0.04 13.7 0.2 3.6 3 1 1 5 5 4 0 Bacterial collagen, middle region GARP PF16731.5 gi|134045879|ref|YP_001097365.1| - 0.05 13.3 37.5 0.14 11.8 4.9 4.0 4 1 1 5 5 3 0 Glutamic acid/alanine-rich protein of Trypanosoma HisKA PF00512.25 gi|134045879|ref|YP_001097365.1| - 0.11 12.5 2.1 58 3.8 0.0 4.2 4 0 0 4 4 4 0 His Kinase A (phospho-acceptor) domain Mod_r PF07200.13 gi|134045879|ref|YP_001097365.1| - 0.11 12.5 20.0 2.5 8.2 0.8 4.2 3 1 1 4 4 4 0 Modifier of rudimentary (Mod(r)) protein T3SSipB PF16535.5 gi|134045879|ref|YP_001097365.1| - 0.16 12.5 28.9 0.33 11.4 5.3 4.8 2 1 2 5 5 5 0 Type III cell invasion protein SipB Laminin_I PF06008.14 gi|134045879|ref|YP_001097365.1| - 0.2 11.4 34.2 3.1 7.4 0.2 3.8 1 1 1 3 3 3 0 Laminin Domain I Spectrin PF00435.21 gi|134045879|ref|YP_001097365.1| - 0.25 11.9 20.7 2.5 8.6 0.3 5.2 3 2 1 5 5 5 0 Spectrin repeat DASH_Dam1 PF08653.10 gi|134045879|ref|YP_001097365.1| - 0.51 10.2 3.1 8.8 6.2 0.2 4.3 4 0 0 4 4 3 0 DASH complex subunit Dam1 LapA_dom PF06305.11 gi|134045879|ref|YP_001097365.1| - 0.58 10.0 0.0 0.58 10.0 0.0 2.5 3 0 0 3 3 2 0 Lipopolysaccharide assembly protein A domain Prominin PF05478.11 gi|134045879|ref|YP_001097365.1| - 0.73 7.7 27.0 0.17 9.8 14.6 3.6 3 1 1 4 4 4 0 Prominin Syntaxin-6_N PF09177.11 gi|134045879|ref|YP_001097365.1| - 0.84 10.2 25.1 15 6.2 4.3 5.4 1 1 3 4 4 4 0 Syntaxin 6, N-terminal Seryl_tRNA_N PF02403.22 gi|134045879|ref|YP_001097365.1| - 1.7 8.9 36.2 0.29 11.4 5.3 5.9 3 2 2 6 6 6 0 Seryl-tRNA synthetase N-terminal domain CALCOCO1 PF07888.11 gi|134045879|ref|YP_001097365.1| - 2 7.2 19.0 0.095 11.6 9.1 2.2 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like FAM76 PF16046.5 gi|134045879|ref|YP_001097365.1| - 2.1 7.6 5.6 5.6 6.2 5.6 1.8 1 0 0 1 1 1 0 FAM76 protein DUF1043 PF06295.12 gi|134045879|ref|YP_001097365.1| - 2.4 8.2 11.0 2.9 7.9 0.2 3.1 2 1 1 3 3 2 0 Protein of unknown function (DUF1043) Golgin_A5 PF09787.9 gi|134045879|ref|YP_001097365.1| - 3 7.2 25.4 2.6 7.4 10.6 3.4 2 2 1 3 3 3 0 Golgin subfamily A member 5 FlaC_arch PF05377.11 gi|134045879|ref|YP_001097365.1| - 3.5 8.1 30.3 1.7 9.1 0.1 7.5 7 1 1 8 8 8 0 Flagella accessory protein C (FlaC) DUF3549 PF12069.8 gi|134045879|ref|YP_001097365.1| - 3.6 6.5 8.0 1.6 7.7 3.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3549) SPT16 PF08644.11 gi|134045879|ref|YP_001097365.1| - 3.6 7.7 6.8 1.7 8.8 2.2 2.9 2 1 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) Cep57_MT_bd PF06657.13 gi|134045879|ref|YP_001097365.1| - 3.9 8.0 6.6 13 6.3 0.7 3.7 4 0 0 4 4 3 0 Centrosome microtubule-binding domain of Cep57 DUF4407 PF14362.6 gi|134045879|ref|YP_001097365.1| - 5.5 6.2 33.2 2.3 7.5 5.2 3.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) Sec34 PF04136.15 gi|134045879|ref|YP_001097365.1| - 6.5 6.6 18.7 13 5.6 2.3 5.0 3 2 3 7 7 6 0 Sec34-like family DUF4201 PF13870.6 gi|134045879|ref|YP_001097365.1| - 7.8 6.2 14.6 3 7.5 0.0 3.4 3 1 1 4 4 3 0 Domain of unknown function (DUF4201) DUF2959 PF11172.8 gi|134045879|ref|YP_001097365.1| - 8 6.6 28.9 2.5 8.2 10.7 5.1 3 1 1 5 5 5 0 Protein of unknown function (DUF2959) COG2 PF06148.11 gi|134045879|ref|YP_001097365.1| - 9.1 6.4 24.4 7.7 6.6 0.5 5.2 3 1 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 SlyX PF04102.12 gi|134045879|ref|YP_001097365.1| - 9.7 6.9 12.6 0.9 10.2 1.3 4.1 4 1 0 4 4 2 0 SlyX GTP_EFTU_D2 PF03144.25 gi|134045881|ref|YP_001097367.1| - 2.2e-07 31.1 0.4 2.2e-07 31.1 0.4 2.6 3 1 0 3 3 3 1 Elongation factor Tu domain 2 eIF2_C PF09173.11 gi|134045881|ref|YP_001097367.1| - 0.0038 17.5 0.1 0.01 16.1 0.1 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal NAD_binding_3 PF03447.16 gi|134045882|ref|YP_001097368.1| - 4.6e-29 101.4 0.1 8.6e-29 100.6 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DUF108 PF01958.18 gi|134045882|ref|YP_001097368.1| - 1.6e-28 98.9 0.3 2.6e-28 98.2 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 GFO_IDH_MocA PF01408.22 gi|134045882|ref|YP_001097368.1| - 1.5e-08 35.4 0.0 2.9e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|134045882|ref|YP_001097368.1| - 3.2e-06 27.6 0.2 8.6e-06 26.2 0.2 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|134045882|ref|YP_001097368.1| - 0.0039 17.3 0.1 0.01 15.9 0.1 1.7 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DapB_N PF01113.20 gi|134045882|ref|YP_001097368.1| - 0.0099 16.0 0.1 0.021 15.0 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_2 PF03446.15 gi|134045882|ref|YP_001097368.1| - 0.045 13.9 0.1 0.08 13.1 0.1 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase PRC PF05239.16 gi|134045883|ref|YP_001097369.1| - 1.6e-12 47.4 0.5 1.9e-12 47.1 0.5 1.1 1 0 0 1 1 1 1 PRC-barrel domain MethyltransfD12 PF02086.15 gi|134045884|ref|YP_001097370.1| - 1.1e-60 205.5 6.5 1.3e-60 205.3 6.5 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Ribosomal_S3Ae PF01015.18 gi|134045885|ref|YP_001097371.1| - 0.02 14.5 0.1 0.022 14.3 0.1 1.1 1 0 0 1 1 1 0 Ribosomal S3Ae family PolyA_pol_RNAbd PF12627.7 gi|134045885|ref|YP_001097371.1| - 0.035 13.8 0.1 0.067 13.0 0.1 1.5 1 0 0 1 1 1 0 Probable RNA and SrmB- binding site of polymerase A MatE PF01554.18 gi|134045886|ref|YP_001097372.1| - 1.8e-40 138.2 42.9 3.2e-25 88.7 14.9 3.2 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|134045886|ref|YP_001097372.1| - 1.4e-10 41.4 31.8 1.2e-07 31.8 13.9 4.6 1 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Exonuc_VII_L PF02601.15 gi|134045887|ref|YP_001097373.1| - 6.5e-85 285.4 1.0 1.1e-73 248.5 0.1 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|134045887|ref|YP_001097373.1| - 6.1e-30 103.3 0.0 1.5e-29 102.0 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|134045887|ref|YP_001097373.1| - 8.6e-10 38.5 0.0 2.7e-09 36.9 0.0 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DUF4539 PF15072.6 gi|134045887|ref|YP_001097373.1| - 0.017 15.1 0.1 0.82 9.7 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4539) RelB_N PF18506.1 gi|134045887|ref|YP_001097373.1| - 0.068 13.0 0.2 0.53 10.1 0.4 2.4 2 0 0 2 2 2 0 RelB Antitoxin alpha helical domain Com_YlbF PF06133.11 gi|134045887|ref|YP_001097373.1| - 0.71 10.5 7.2 0.4 11.3 2.4 2.5 2 0 0 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA Exonuc_VII_S PF02609.16 gi|134045888|ref|YP_001097374.1| - 1.2e-18 66.9 6.7 1.2e-18 66.9 6.7 1.3 2 0 0 2 2 2 1 Exonuclease VII small subunit YkyA PF10368.9 gi|134045888|ref|YP_001097374.1| - 0.00014 21.6 3.7 0.00015 21.5 3.7 1.0 1 0 0 1 1 1 1 Putative cell-wall binding lipoprotein HGD-D PF06050.13 gi|134045888|ref|YP_001097374.1| - 0.0061 16.4 0.3 0.0063 16.3 0.3 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component TPR_11 PF13414.6 gi|134045888|ref|YP_001097374.1| - 0.048 13.4 0.4 0.087 12.5 0.1 1.6 2 0 0 2 2 2 0 TPR repeat 5_3_exonuc PF01367.20 gi|134045888|ref|YP_001097374.1| - 0.05 14.2 0.6 0.06 13.9 0.6 1.2 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold DUF812 PF05667.11 gi|134045888|ref|YP_001097374.1| - 0.08 11.8 3.6 0.086 11.7 3.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) EamA PF00892.20 gi|134045889|ref|YP_001097375.1| - 2.3e-08 34.3 20.2 2.5e-08 34.2 20.2 1.0 1 0 0 1 1 1 1 EamA-like transporter family Gaa1 PF04114.14 gi|134045889|ref|YP_001097375.1| - 0.21 10.6 10.6 0.23 10.4 10.6 1.0 1 0 0 1 1 1 0 Gaa1-like, GPI transamidase component DUF4418 PF14387.6 gi|134045889|ref|YP_001097375.1| - 1.4 9.1 15.0 3.8 7.8 4.3 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4418) PMP22_Claudin PF00822.20 gi|134045889|ref|YP_001097375.1| - 5 7.0 15.1 0.18 11.6 6.5 2.2 1 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin family UvrA_inter PF17760.1 gi|134045890|ref|YP_001097376.1| - 3.6e-31 107.4 0.3 1.2e-30 105.7 0.0 2.1 2 0 0 2 2 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|134045890|ref|YP_001097376.1| - 4.5e-29 101.0 0.1 4.5e-27 94.6 0.0 3.1 3 0 0 3 3 3 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|134045890|ref|YP_001097376.1| - 2.9e-20 73.2 7.3 7.6e-10 39.4 0.6 4.5 3 2 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|134045890|ref|YP_001097376.1| - 3.8e-09 36.3 7.9 0.05 13.0 4.1 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|134045890|ref|YP_001097376.1| - 3.9e-08 32.9 0.1 0.0051 16.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|134045890|ref|YP_001097376.1| - 7.1e-07 29.8 0.4 0.021 15.2 0.2 3.4 3 1 0 3 3 2 2 AAA ATPase domain AAA_14 PF13173.6 gi|134045890|ref|YP_001097376.1| - 1.2e-06 28.6 0.1 0.097 12.7 0.0 4.0 3 0 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 gi|134045890|ref|YP_001097376.1| - 1.5e-05 25.0 0.4 0.038 13.9 0.1 2.8 2 0 0 2 2 2 2 RsgA GTPase AAA_22 PF13401.6 gi|134045890|ref|YP_001097376.1| - 4.1e-05 23.9 0.3 0.67 10.2 0.0 3.8 4 0 0 4 4 4 2 AAA domain AAA_18 PF13238.6 gi|134045890|ref|YP_001097376.1| - 4.4e-05 24.0 0.5 0.47 11.0 0.1 3.4 3 0 0 3 3 2 2 AAA domain AAA_21 PF13304.6 gi|134045890|ref|YP_001097376.1| - 6.5e-05 22.9 16.8 0.0061 16.4 0.0 4.6 4 1 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system Viral_helicase1 PF01443.18 gi|134045890|ref|YP_001097376.1| - 9e-05 22.3 0.0 0.41 10.3 0.0 3.3 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|134045890|ref|YP_001097376.1| - 0.0002 20.8 0.0 0.071 12.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 gi|134045890|ref|YP_001097376.1| - 0.00025 20.7 0.0 0.46 10.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|134045890|ref|YP_001097376.1| - 0.00025 20.5 0.1 0.38 10.1 0.0 2.7 2 0 0 2 2 2 2 KaiC DnaJ_CXXCXGXG PF00684.19 gi|134045890|ref|YP_001097376.1| - 0.00033 21.0 5.1 0.016 15.6 0.6 3.6 3 0 0 3 3 3 1 DnaJ central domain T2SSE PF00437.20 gi|134045890|ref|YP_001097376.1| - 0.00065 18.8 0.1 0.36 9.9 0.0 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_33 PF13671.6 gi|134045890|ref|YP_001097376.1| - 0.0013 18.9 0.0 1.2 9.3 0.0 2.8 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|134045890|ref|YP_001097376.1| - 0.0014 18.5 0.0 0.79 9.6 0.0 2.6 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_24 PF13479.6 gi|134045890|ref|YP_001097376.1| - 0.0019 17.9 0.8 1.5 8.5 0.0 3.3 3 0 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|134045890|ref|YP_001097376.1| - 0.0051 16.6 26.6 0.078 12.7 0.6 4.8 4 1 0 4 4 4 2 AAA ATPase domain BCA_ABC_TP_C PF12399.8 gi|134045890|ref|YP_001097376.1| - 0.011 15.6 0.2 7.5 6.6 0.0 2.8 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter cobW PF02492.19 gi|134045890|ref|YP_001097376.1| - 0.014 15.0 0.1 2.2 7.9 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|134045890|ref|YP_001097376.1| - 0.017 15.0 7.1 1.2 8.9 0.6 3.4 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|134045890|ref|YP_001097376.1| - 0.021 14.5 0.1 12 5.6 0.0 2.9 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.22 gi|134045890|ref|YP_001097376.1| - 0.025 15.0 0.0 4.1 7.8 0.0 2.9 2 0 0 2 2 2 0 RNA helicase MeaB PF03308.16 gi|134045890|ref|YP_001097376.1| - 0.037 13.0 0.1 7.6 5.4 0.0 2.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|134045890|ref|YP_001097376.1| - 0.069 13.1 0.0 14 5.5 0.0 2.5 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.6 gi|134045890|ref|YP_001097376.1| - 0.088 13.3 0.4 0.088 13.3 0.4 4.2 4 1 0 4 4 4 0 AAA domain NTPase_1 PF03266.15 gi|134045890|ref|YP_001097376.1| - 0.18 11.7 3.8 11 5.9 0.0 3.4 4 0 0 4 4 3 0 NTPase PRD PF00874.20 gi|134045890|ref|YP_001097376.1| - 0.21 11.9 1.5 2.6 8.4 0.2 3.0 2 0 0 2 2 2 0 PRD domain SbcCD_C PF13558.6 gi|134045890|ref|YP_001097376.1| - 0.23 11.7 0.4 13 6.1 0.1 3.0 3 1 0 3 3 2 0 Putative exonuclease SbcCD, C subunit Zn-ribbon_8 PF09723.10 gi|134045890|ref|YP_001097376.1| - 0.73 10.0 8.2 21 5.3 0.2 3.8 3 0 0 3 3 3 0 Zinc ribbon domain UvrC_HhH_N PF08459.11 gi|134045891|ref|YP_001097377.1| - 1.3e-51 174.6 0.0 3e-51 173.4 0.0 1.7 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.24 gi|134045891|ref|YP_001097377.1| - 7.7e-12 45.3 5.7 8.2e-12 45.2 3.1 2.6 2 0 0 2 2 2 1 GIY-YIG catalytic domain UVR PF02151.19 gi|134045891|ref|YP_001097377.1| - 2.3e-05 24.0 4.0 2.3e-05 24.0 4.0 2.1 2 0 0 2 2 2 1 UvrB/uvrC motif T5orf172 PF10544.9 gi|134045891|ref|YP_001097377.1| - 0.05 14.2 0.7 0.21 12.1 0.1 2.2 2 0 0 2 2 2 0 T5orf172 domain UvrB_inter PF17757.1 gi|134045892|ref|YP_001097378.1| - 9.9e-32 109.0 0.3 3.5e-31 107.2 0.3 2.0 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|134045892|ref|YP_001097378.1| - 3e-20 71.8 1.3 7.7e-20 70.5 1.3 1.8 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|134045892|ref|YP_001097378.1| - 1e-17 64.5 0.2 4.5e-17 62.4 0.2 2.1 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|134045892|ref|YP_001097378.1| - 4.1e-14 52.9 0.1 3.9e-12 46.5 0.1 2.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|134045892|ref|YP_001097378.1| - 7.2e-12 44.7 2.1 2.9e-11 42.7 2.1 2.2 1 0 0 1 1 1 1 UvrB/uvrC motif DEAD PF00270.29 gi|134045892|ref|YP_001097378.1| - 1.9e-05 24.5 0.1 0.0015 18.3 0.0 3.4 3 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.6 gi|134045892|ref|YP_001097378.1| - 0.0021 18.4 3.1 0.47 10.8 0.0 2.9 3 1 0 3 3 2 2 AAA domain AAA_30 PF13604.6 gi|134045892|ref|YP_001097378.1| - 0.0042 16.8 0.0 0.13 12.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain SWI2_SNF2 PF18766.1 gi|134045892|ref|YP_001097378.1| - 0.042 13.5 0.3 0.23 11.1 0.0 2.4 4 0 0 4 4 4 0 SWI2/SNF2 ATPase UB2H PF14814.6 gi|134045892|ref|YP_001097378.1| - 0.11 12.6 0.0 0.37 10.8 0.0 2.0 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain TrwB_AAD_bind PF10412.9 gi|134045892|ref|YP_001097378.1| - 0.12 11.2 0.0 0.29 10.0 0.0 1.6 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain UvrD-helicase PF00580.21 gi|134045892|ref|YP_001097378.1| - 0.21 11.1 7.3 7.7 5.9 3.8 2.7 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain UPF0114 PF03350.16 gi|134045893|ref|YP_001097379.1| - 1.4e-34 118.8 9.8 1.4e-34 118.8 9.8 2.0 2 0 0 2 2 2 1 Uncharacterized protein family, UPF0114 Glucos_trans_II PF14264.6 gi|134045893|ref|YP_001097379.1| - 0.012 15.0 2.2 0.012 15.0 2.2 2.7 2 1 0 2 2 2 0 Glucosyl transferase GtrII TMEM208_SND2 PF05620.11 gi|134045893|ref|YP_001097379.1| - 3.6 7.4 6.9 1.6 8.5 0.1 2.4 2 1 1 3 3 3 0 SRP-independent targeting protein 2/TMEM208 SNO PF01174.19 gi|134045895|ref|YP_001097381.1| - 0.029 14.2 0.0 0.046 13.6 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family N6_N4_Mtase PF01555.18 gi|134045895|ref|YP_001097381.1| - 0.084 12.6 0.1 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 DNA methylase ACT PF01842.25 gi|134045897|ref|YP_001097383.1| - 1.5e-13 50.3 0.1 1.9e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|134045897|ref|YP_001097383.1| - 9.8e-06 25.3 0.1 0.032 14.0 0.0 2.5 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|134045897|ref|YP_001097383.1| - 1.6e-05 25.4 0.2 0.0019 18.7 0.1 2.2 2 0 0 2 2 2 1 ACT domain Nitro_FeMo-Co PF02579.17 gi|134045897|ref|YP_001097383.1| - 0.11 12.8 0.0 0.27 11.6 0.0 1.6 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor SMC_N PF02463.19 gi|134045897|ref|YP_001097383.1| - 0.14 11.6 0.0 0.27 10.7 0.0 1.5 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AMP-binding_C_2 PF14535.6 gi|134045898|ref|YP_001097384.1| - 1.1e-34 118.6 0.8 2.3e-34 117.6 0.8 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|134045898|ref|YP_001097384.1| - 7.3e-14 51.2 0.0 9.2e-14 50.9 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|134045898|ref|YP_001097384.1| - 2.5e-05 23.5 0.1 0.0033 16.5 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE POR PF01558.18 gi|134045899|ref|YP_001097385.1| - 3.4e-42 144.5 0.3 3.8e-42 144.3 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|134045900|ref|YP_001097386.1| - 2e-27 95.8 0.1 4.5e-27 94.7 0.1 1.6 2 0 0 2 2 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|134045900|ref|YP_001097386.1| - 2e-14 53.9 0.0 3.3e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|134045900|ref|YP_001097386.1| - 3.4e-09 36.1 7.7 6.2e-05 22.6 1.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134045900|ref|YP_001097386.1| - 3.4e-06 26.9 14.8 0.0014 18.6 1.0 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134045900|ref|YP_001097386.1| - 4.4e-05 23.3 10.4 0.0032 17.5 1.1 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134045900|ref|YP_001097386.1| - 6e-05 23.1 9.5 0.00031 20.8 9.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134045900|ref|YP_001097386.1| - 8.1e-05 23.1 5.0 0.16 12.6 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045900|ref|YP_001097386.1| - 0.00022 21.3 10.2 0.0036 17.4 10.4 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045900|ref|YP_001097386.1| - 0.002 18.3 7.0 0.002 18.3 7.0 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain DXP_synthase_N PF13292.6 gi|134045900|ref|YP_001097386.1| - 0.0071 15.6 0.3 0.13 11.5 0.3 2.2 1 1 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase Fer4_4 PF12800.7 gi|134045900|ref|YP_001097386.1| - 0.011 16.2 10.0 0.85 10.3 1.9 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|134045900|ref|YP_001097386.1| - 0.011 15.3 0.4 0.019 14.6 0.0 1.5 2 0 0 2 2 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transket_pyr PF02779.24 gi|134045900|ref|YP_001097386.1| - 0.014 15.1 0.0 0.066 12.9 0.0 2.1 2 1 0 2 2 2 0 Transketolase, pyrimidine binding domain DUF3216 PF11505.8 gi|134045900|ref|YP_001097386.1| - 0.027 14.7 0.0 0.094 12.9 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3216) Fer4_15 PF13459.6 gi|134045900|ref|YP_001097386.1| - 0.22 12.3 6.8 4.9 8.0 0.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|134045900|ref|YP_001097386.1| - 0.25 12.2 7.4 0.51 11.2 1.6 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134045900|ref|YP_001097386.1| - 0.53 10.8 5.9 4.1 7.9 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045900|ref|YP_001097386.1| - 5.2 8.1 9.1 5 8.1 1.1 2.8 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain PAAR_motif PF05488.13 gi|134045900|ref|YP_001097386.1| - 6.4 7.0 6.0 0.65 10.2 0.2 2.3 2 0 0 2 2 2 0 PAAR motif Fer4_17 PF13534.6 gi|134045900|ref|YP_001097386.1| - 9.5 6.9 12.1 13 6.4 2.5 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain SBP_bac_3 PF00497.20 gi|134045901|ref|YP_001097387.1| - 5.1e-44 150.4 0.0 5.8e-44 150.2 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|134045901|ref|YP_001097387.1| - 7.9e-05 22.8 0.5 0.00065 19.9 0.5 2.2 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|134045901|ref|YP_001097387.1| - 0.00032 20.7 0.3 0.0017 18.4 0.1 1.9 1 1 1 2 2 2 1 NMT1/THI5 like Lipoprotein_9 PF03180.14 gi|134045901|ref|YP_001097387.1| - 0.0054 15.9 0.9 0.077 12.1 0.3 2.1 2 0 0 2 2 2 1 NLPA lipoprotein CorA PF01544.18 gi|134045902|ref|YP_001097388.1| - 5.3e-73 245.9 7.9 6.3e-73 245.6 7.9 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein E1-E2_ATPase PF00122.20 gi|134045903|ref|YP_001097389.1| - 5.1e-52 176.0 0.7 5.1e-52 176.0 0.7 2.7 3 1 1 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|134045903|ref|YP_001097389.1| - 4.5e-37 127.5 11.1 4.5e-37 127.5 11.1 2.4 2 1 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|134045903|ref|YP_001097389.1| - 5.6e-18 66.0 2.3 6.4e-17 62.5 2.3 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|134045903|ref|YP_001097389.1| - 6.8e-17 60.9 0.1 1.4e-16 59.9 0.1 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|134045903|ref|YP_001097389.1| - 5e-15 55.4 0.0 1.3e-14 54.1 0.0 1.7 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|134045903|ref|YP_001097389.1| - 0.0053 16.5 7.3 0.011 15.5 0.1 3.0 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase DUF2975 PF11188.8 gi|134045903|ref|YP_001097389.1| - 0.01 15.7 4.0 0.01 15.7 4.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2975) YGGT PF02325.17 gi|134045903|ref|YP_001097389.1| - 0.027 14.9 0.7 0.11 12.9 0.7 2.0 1 0 0 1 1 1 0 YGGT family Peptidase_U32_C PF16325.5 gi|134045903|ref|YP_001097389.1| - 0.052 13.8 0.5 0.14 12.4 0.1 1.9 2 0 0 2 2 2 0 Peptidase family U32 C-terminal domain HAD PF12710.7 gi|134045903|ref|YP_001097389.1| - 0.068 13.6 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Class_IIIsignal PF04021.12 gi|134045904|ref|YP_001097390.1| - 7.7e-07 28.9 1.7 1.4e-06 28.1 1.7 1.4 1 0 0 1 1 1 1 Class III signal peptide NCBP3 PF10309.9 gi|134045904|ref|YP_001097390.1| - 0.098 12.5 0.3 0.23 11.3 0.2 1.8 2 0 0 2 2 2 0 Nuclear cap-binding protein subunit 3 4HFCP_synth PF04476.13 gi|134045905|ref|YP_001097391.1| - 5.3e-91 304.4 0.1 6e-91 304.2 0.1 1.0 1 0 0 1 1 1 1 4-HFC-P synthase QRPTase_C PF01729.19 gi|134045905|ref|YP_001097391.1| - 0.0038 17.0 0.1 0.11 12.3 0.1 2.7 1 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain GHL6 PF14871.6 gi|134045905|ref|YP_001097391.1| - 0.029 14.5 0.1 2.8 8.1 0.0 2.4 2 1 0 2 2 2 0 Hypothetical glycosyl hydrolase 6 HMGL-like PF00682.19 gi|134045905|ref|YP_001097391.1| - 0.049 13.2 0.8 0.39 10.2 0.1 2.5 1 1 0 2 2 2 0 HMGL-like DeoC PF01791.9 gi|134045905|ref|YP_001097391.1| - 0.066 12.8 8.0 0.37 10.4 3.1 3.3 2 2 0 2 2 2 0 DeoC/LacD family aldolase Na_H_Exchanger PF00999.21 gi|134045906|ref|YP_001097392.1| - 1.8e-47 162.0 34.0 2.2e-47 161.7 34.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family UDPG_MGDP_dh_N PF03721.14 gi|134045907|ref|YP_001097393.1| - 2e-54 184.0 1.8 6.4e-54 182.4 1.9 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|134045907|ref|YP_001097393.1| - 4.3e-27 94.1 1.0 8.6e-27 93.2 0.2 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|134045907|ref|YP_001097393.1| - 2.4e-25 89.0 0.0 8.5e-23 80.8 0.0 2.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|134045907|ref|YP_001097393.1| - 2e-09 37.8 0.1 2.6e-08 34.2 0.0 2.8 3 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|134045907|ref|YP_001097393.1| - 1.2e-07 31.5 0.0 3.7e-07 29.9 0.0 1.9 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|134045907|ref|YP_001097393.1| - 1.8e-05 25.0 3.8 9.1e-05 22.7 0.1 3.3 4 0 0 4 4 3 1 TrkA-N domain 3HCDH_N PF02737.18 gi|134045907|ref|YP_001097393.1| - 5.4e-05 23.2 0.1 0.00014 21.8 0.1 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|134045907|ref|YP_001097393.1| - 6e-05 23.1 0.9 0.013 15.5 0.1 3.7 3 1 1 4 4 4 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|134045907|ref|YP_001097393.1| - 6.3e-05 23.5 0.6 0.0011 19.5 0.0 3.0 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|134045907|ref|YP_001097393.1| - 0.00013 21.4 0.0 0.0003 20.1 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|134045907|ref|YP_001097393.1| - 0.00014 21.3 0.1 0.0076 15.6 0.1 2.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|134045907|ref|YP_001097393.1| - 0.0028 18.2 1.6 0.043 14.4 0.1 3.4 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.21 gi|134045907|ref|YP_001097393.1| - 0.011 15.3 0.0 0.028 13.9 0.0 1.7 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|134045907|ref|YP_001097393.1| - 0.011 16.0 0.3 0.33 11.2 0.0 3.0 3 0 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox_2 PF07992.14 gi|134045907|ref|YP_001097393.1| - 0.013 14.8 0.0 0.031 13.5 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|134045907|ref|YP_001097393.1| - 0.015 15.4 0.5 0.27 11.3 0.0 2.8 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase UPF0146 PF03686.13 gi|134045907|ref|YP_001097393.1| - 0.034 14.0 0.1 0.36 10.7 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0146) IlvN PF07991.12 gi|134045907|ref|YP_001097393.1| - 0.12 12.0 0.3 6.3 6.4 0.0 2.9 3 0 0 3 3 3 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DAO PF01266.24 gi|134045907|ref|YP_001097393.1| - 0.21 11.2 0.1 0.37 10.3 0.1 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Epimerase_2 PF02350.19 gi|134045908|ref|YP_001097394.1| - 1.8e-115 385.5 0.0 2.1e-115 385.3 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 gi|134045908|ref|YP_001097394.1| - 0.027 14.5 0.0 0.27 11.2 0.0 2.4 2 1 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|134045908|ref|YP_001097394.1| - 0.051 13.6 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase 4-like ParA PF10609.9 gi|134045909|ref|YP_001097395.1| - 3.2e-96 321.5 0.5 4.3e-96 321.1 0.5 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|134045909|ref|YP_001097395.1| - 1.4e-12 47.8 0.0 4.1e-12 46.3 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|134045909|ref|YP_001097395.1| - 2.6e-12 47.0 0.7 1.6e-08 34.7 0.3 2.3 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|134045909|ref|YP_001097395.1| - 1.9e-06 27.4 0.6 1.1e-05 24.9 0.6 2.1 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|134045909|ref|YP_001097395.1| - 1.5e-05 24.6 0.6 0.00027 20.5 0.3 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|134045909|ref|YP_001097395.1| - 0.0001 21.6 4.8 0.00032 20.0 1.8 2.6 2 1 1 3 3 3 1 Anion-transporting ATPase APS_kinase PF01583.20 gi|134045909|ref|YP_001097395.1| - 0.00026 20.9 0.1 0.00039 20.3 0.1 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase RsgA_GTPase PF03193.16 gi|134045909|ref|YP_001097395.1| - 0.00094 19.1 0.4 0.0024 17.8 0.4 1.6 1 0 0 1 1 1 1 RsgA GTPase CBP_BcsQ PF06564.12 gi|134045909|ref|YP_001097395.1| - 0.0013 18.3 0.1 0.081 12.4 0.1 2.2 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|134045909|ref|YP_001097395.1| - 0.003 17.4 0.0 0.0052 16.6 0.0 1.4 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|134045909|ref|YP_001097395.1| - 0.0043 16.1 0.0 0.007 15.4 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|134045909|ref|YP_001097395.1| - 0.0056 16.3 0.1 0.027 14.1 0.1 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|134045909|ref|YP_001097395.1| - 0.015 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|134045909|ref|YP_001097395.1| - 0.022 15.3 0.1 0.053 14.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|134045909|ref|YP_001097395.1| - 0.12 11.7 0.2 0.23 10.7 0.0 1.5 2 0 0 2 2 2 0 VirC1 protein AAA_30 PF13604.6 gi|134045909|ref|YP_001097395.1| - 0.13 12.0 0.5 0.2 11.4 0.5 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|134045909|ref|YP_001097395.1| - 0.24 11.3 2.3 0.2 11.6 0.5 1.7 2 0 0 2 2 2 0 NTPase Methyltransf_30 PF05430.11 gi|134045910|ref|YP_001097396.1| - 3.4e-25 88.3 0.0 6.4e-25 87.4 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|134045910|ref|YP_001097396.1| - 0.058 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain RimK PF08443.11 gi|134045911|ref|YP_001097397.1| - 4.6e-31 107.9 0.1 7.7e-31 107.2 0.1 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|134045911|ref|YP_001097397.1| - 5.6e-12 45.4 0.0 8.8e-12 44.8 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|134045911|ref|YP_001097397.1| - 4.6e-06 26.1 0.0 0.0045 16.3 0.0 2.2 1 1 0 2 2 2 2 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|134045911|ref|YP_001097397.1| - 5.4e-05 22.6 0.1 0.019 14.3 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|134045911|ref|YP_001097397.1| - 0.00012 22.2 0.7 0.0011 19.0 0.7 2.1 1 1 0 1 1 1 1 ATP-grasp domain GSP_synth PF03738.14 gi|134045911|ref|YP_001097397.1| - 0.002 17.4 0.0 0.0056 15.9 0.0 1.7 1 1 1 2 2 2 1 Glutathionylspermidine synthase preATP-grasp Rimk_N PF18030.1 gi|134045911|ref|YP_001097397.1| - 0.028 14.8 0.0 0.052 14.0 0.0 1.5 1 0 0 1 1 1 0 RimK PreATP-grasp domain DUF1890 PF09001.11 gi|134045912|ref|YP_001097398.1| - 4.7e-46 156.7 0.1 5.3e-46 156.5 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) PadR PF03551.14 gi|134045913|ref|YP_001097399.1| - 1.1e-15 57.4 0.3 1.9e-15 56.6 0.3 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|134045913|ref|YP_001097399.1| - 8.7e-06 26.1 0.4 1.6e-05 25.2 0.3 1.5 1 1 0 1 1 1 1 Penicillinase repressor HTH_34 PF13601.6 gi|134045913|ref|YP_001097399.1| - 1.2e-05 25.3 0.8 2.8e-05 24.2 0.3 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|134045913|ref|YP_001097399.1| - 5.7e-05 23.5 0.0 9.4e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|134045913|ref|YP_001097399.1| - 0.0002 21.2 0.3 0.00097 19.0 0.3 2.1 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FUR PF01475.19 gi|134045913|ref|YP_001097399.1| - 0.022 14.9 0.1 0.047 13.8 0.1 1.6 1 0 0 1 1 1 0 Ferric uptake regulator family Replic_Relax PF13814.6 gi|134045913|ref|YP_001097399.1| - 0.036 14.1 0.0 0.072 13.1 0.0 1.4 2 0 0 2 2 2 0 Replication-relaxation Cdc6_C PF09079.11 gi|134045913|ref|YP_001097399.1| - 0.038 14.0 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain DOMON PF03351.17 gi|134045913|ref|YP_001097399.1| - 0.076 13.2 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 DOMON domain TEP1_N PF05386.11 gi|134045913|ref|YP_001097399.1| - 0.086 12.4 0.1 0.086 12.4 0.1 2.7 3 0 0 3 3 3 0 TEP1 N-terminal domain Rio2_N PF09202.11 gi|134045913|ref|YP_001097399.1| - 0.11 12.7 0.4 3.9 7.8 0.1 2.6 2 1 1 3 3 3 0 Rio2, N-terminal DUF2098 PF09871.9 gi|134045913|ref|YP_001097399.1| - 0.22 11.9 2.5 0.16 12.3 0.9 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2098) MatE PF01554.18 gi|134045914|ref|YP_001097400.1| - 1.2e-45 155.1 47.2 3.4e-27 95.1 15.3 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|134045914|ref|YP_001097400.1| - 3.4e-07 30.4 21.7 3.4e-07 30.4 21.7 4.6 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|134045914|ref|YP_001097400.1| - 1.1e-05 25.0 29.5 1.1e-05 25.0 29.5 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein DUF1894 PF08979.11 gi|134045915|ref|YP_001097401.1| - 1.4e-31 108.7 0.1 1.6e-31 108.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) tRNA-synt_1 PF00133.22 gi|134045916|ref|YP_001097402.1| - 4.7e-64 216.7 3.7 1.5e-61 208.4 3.7 3.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|134045916|ref|YP_001097402.1| - 2.8e-26 92.2 0.2 7.3e-11 41.4 0.1 3.5 2 1 0 2 2 2 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|134045916|ref|YP_001097402.1| - 7.6e-22 77.9 0.2 2.7e-21 76.1 0.2 2.0 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|134045916|ref|YP_001097402.1| - 3.5e-10 39.7 0.0 1.6e-09 37.5 0.0 2.2 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|134045916|ref|YP_001097402.1| - 0.00045 19.7 0.1 0.0023 17.3 0.0 2.2 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|134045916|ref|YP_001097402.1| - 0.0062 15.5 1.2 0.013 14.5 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) RTC4 PF14474.6 gi|134045916|ref|YP_001097402.1| - 0.13 12.4 0.0 0.61 10.3 0.0 2.1 2 0 0 2 2 2 0 RTC4-like domain IF2_N PF04760.15 gi|134045916|ref|YP_001097402.1| - 0.69 9.8 4.3 1.1 9.1 0.0 3.4 4 0 0 4 4 4 0 Translation initiation factor IF-2, N-terminal region ProRS-C_2 PF09181.10 gi|134045917|ref|YP_001097403.1| - 1.3e-30 105.3 1.1 1.3e-30 105.3 1.1 2.3 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.25 gi|134045917|ref|YP_001097403.1| - 1e-25 90.7 0.0 2.1e-25 89.7 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|134045917|ref|YP_001097403.1| - 2.5e-17 62.8 0.2 5.9e-17 61.6 0.2 1.6 1 0 0 1 1 1 1 Anticodon binding domain DHDPS PF00701.22 gi|134045917|ref|YP_001097403.1| - 0.097 11.4 0.4 0.43 9.2 0.1 1.9 2 0 0 2 2 2 0 Dihydrodipicolinate synthetase family Proteasome PF00227.26 gi|134045918|ref|YP_001097404.1| - 3e-53 180.2 0.4 3.5e-53 179.9 0.4 1.1 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.8 gi|134045919|ref|YP_001097405.1| - 9e-26 90.3 0.0 1.7e-25 89.4 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain KH_7 PF17214.3 gi|134045919|ref|YP_001097405.1| - 6.5e-24 83.7 8.6 3.3e-23 81.4 0.2 4.2 5 0 0 5 5 5 1 KH domain RMMBL PF07521.12 gi|134045919|ref|YP_001097405.1| - 6.8e-14 51.6 0.0 1.7e-13 50.3 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|134045919|ref|YP_001097405.1| - 8.3e-13 48.2 0.0 1.6e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|134045919|ref|YP_001097405.1| - 9.3e-12 45.4 1.0 3.3e-11 43.6 1.0 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|134045919|ref|YP_001097405.1| - 1.4e-10 41.0 0.0 2.5e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|134045919|ref|YP_001097405.1| - 6.2e-06 25.9 0.9 2.8e-05 23.9 0.1 2.4 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|134045919|ref|YP_001097405.1| - 0.0023 17.9 0.0 0.005 16.8 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|134045919|ref|YP_001097405.1| - 0.0079 16.1 0.1 0.027 14.3 0.1 2.0 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|134045919|ref|YP_001097405.1| - 0.13 12.2 0.2 0.71 9.7 0.2 2.2 2 0 0 2 2 2 0 KH domain CW_binding_2 PF04122.12 gi|134045920|ref|YP_001097406.1| - 2.2e-06 28.2 0.3 0.028 15.1 0.0 2.6 2 1 0 2 2 2 2 Putative cell wall binding repeat 2 pXO2-72 PF17443.2 gi|134045921|ref|YP_001097407.1| - 0.056 13.7 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein pXO2-72 HTH_17 PF12728.7 gi|134045921|ref|YP_001097407.1| - 0.1 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fer4_5 PF12801.7 gi|134045922|ref|YP_001097408.1| - 9e-16 57.6 26.4 6.9e-13 48.3 1.6 3.4 2 1 1 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|134045922|ref|YP_001097408.1| - 3.1e-05 24.1 11.4 3.1e-05 24.1 11.4 3.0 3 1 1 4 4 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|134045922|ref|YP_001097408.1| - 4.9e-05 23.0 21.6 0.0022 17.7 1.7 4.8 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134045922|ref|YP_001097408.1| - 0.00028 21.4 15.9 0.0044 17.6 1.7 3.4 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134045922|ref|YP_001097408.1| - 0.00077 19.6 27.7 0.0035 17.5 16.1 3.0 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134045922|ref|YP_001097408.1| - 0.0053 16.9 21.3 0.019 15.1 1.9 3.5 4 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134045922|ref|YP_001097408.1| - 0.0053 16.8 15.3 0.0053 16.8 15.3 2.8 4 1 0 4 4 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134045922|ref|YP_001097408.1| - 0.0086 16.1 2.4 0.0086 16.1 2.4 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|134045922|ref|YP_001097408.1| - 0.046 14.3 8.3 0.046 14.3 8.3 3.5 4 1 0 4 4 3 0 4Fe-4S dicluster domain DUF2254 PF10011.9 gi|134045922|ref|YP_001097408.1| - 0.49 9.2 2.1 0.92 8.3 2.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Fer4_8 PF13183.6 gi|134045922|ref|YP_001097408.1| - 1 9.8 19.1 1.2 9.6 4.5 3.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134045922|ref|YP_001097408.1| - 8.5 7.4 19.7 5.1 8.1 3.4 4.1 4 1 1 5 5 5 0 4Fe-4S double cluster binding domain Xan_ur_permease PF00860.20 gi|134045923|ref|YP_001097409.1| - 4.7e-48 163.8 51.8 5.6e-48 163.6 51.8 1.0 1 0 0 1 1 1 1 Permease family tRNA-synt_2d PF01409.20 gi|134045924|ref|YP_001097410.1| - 3.5e-57 193.7 0.0 1.1e-52 179.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|134045924|ref|YP_001097410.1| - 1.2e-12 47.6 1.2 1.2e-12 47.6 1.2 2.1 2 0 0 2 2 2 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|134045924|ref|YP_001097410.1| - 5.6e-10 39.0 0.0 2.7e-07 30.2 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2b PF00587.25 gi|134045924|ref|YP_001097410.1| - 0.00037 20.5 0.0 0.0015 18.5 0.0 2.2 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) TIM PF00121.18 gi|134045925|ref|YP_001097411.1| - 2.3e-09 37.0 0.0 1.2e-07 31.4 0.0 2.2 1 1 1 2 2 2 2 Triosephosphate isomerase ThiG PF05690.14 gi|134045925|ref|YP_001097411.1| - 4.2e-05 23.0 0.2 5.2e-05 22.7 0.2 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|134045925|ref|YP_001097411.1| - 0.00025 20.2 0.2 0.00038 19.6 0.1 1.4 2 0 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|134045925|ref|YP_001097411.1| - 0.001 18.6 0.4 0.0018 17.8 0.2 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein IGPS PF00218.21 gi|134045925|ref|YP_001097411.1| - 0.0022 17.2 0.2 0.0037 16.5 0.1 1.4 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|134045925|ref|YP_001097411.1| - 0.034 13.5 0.1 0.057 12.8 0.1 1.3 1 1 0 1 1 1 0 Nitronate monooxygenase DeoC PF01791.9 gi|134045926|ref|YP_001097412.1| - 7.2e-67 225.4 0.0 8.6e-67 225.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase Asparaginase_C PF17763.1 gi|134045926|ref|YP_001097412.1| - 0.095 12.9 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain PrmA PF06325.13 gi|134045927|ref|YP_001097413.1| - 4.6e-11 42.7 0.4 6.8e-11 42.1 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|134045927|ref|YP_001097413.1| - 1.6e-08 34.5 0.2 2e-08 34.2 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|134045927|ref|YP_001097413.1| - 7.5e-08 32.1 0.9 4.2e-07 29.7 0.9 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|134045927|ref|YP_001097413.1| - 2e-07 31.6 0.0 3.4e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|134045927|ref|YP_001097413.1| - 3.9e-06 27.4 0.0 7e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|134045927|ref|YP_001097413.1| - 7.1e-06 25.8 0.1 1.4e-05 24.8 0.1 1.5 1 1 0 1 1 1 1 Conserved hypothetical protein 95 AviRa PF11599.8 gi|134045927|ref|YP_001097413.1| - 0.001 18.5 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 RRNA methyltransferase AviRa UPF0020 PF01170.18 gi|134045927|ref|YP_001097413.1| - 0.0012 18.6 0.4 0.0053 16.5 0.4 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.17 gi|134045927|ref|YP_001097413.1| - 0.0023 17.4 0.0 0.0034 16.9 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase N6_Mtase PF02384.16 gi|134045927|ref|YP_001097413.1| - 0.004 16.5 0.1 0.0055 16.0 0.1 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_12 PF08242.12 gi|134045927|ref|YP_001097413.1| - 0.0051 17.5 0.6 0.011 16.4 0.6 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|134045927|ref|YP_001097413.1| - 0.0084 15.7 0.1 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 gi|134045927|ref|YP_001097413.1| - 0.015 15.2 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain RPM2 PF08579.11 gi|134045927|ref|YP_001097413.1| - 0.024 15.1 1.1 0.024 15.1 1.1 2.1 2 0 0 2 2 2 0 Mitochondrial ribonuclease P subunit (RPM2) PCMT PF01135.19 gi|134045927|ref|YP_001097413.1| - 0.057 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|134045927|ref|YP_001097413.1| - 0.094 12.6 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|134045927|ref|YP_001097413.1| - 0.14 12.2 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain HSP20 PF00011.21 gi|134045928|ref|YP_001097414.1| - 2.1e-09 37.5 0.1 2.5e-09 37.2 0.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|134045928|ref|YP_001097414.1| - 0.00011 21.7 0.0 0.00019 20.9 0.0 1.4 1 1 0 1 1 1 1 HSP20-like domain found in ArsA SRP54 PF00448.22 gi|134045929|ref|YP_001097415.1| - 3e-73 245.7 2.7 4.8e-73 245.0 2.7 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|134045929|ref|YP_001097415.1| - 3.6e-11 43.1 11.5 4e-11 43.0 4.5 3.2 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|134045929|ref|YP_001097415.1| - 8.5e-06 25.6 0.6 1.4e-05 24.9 0.6 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|134045929|ref|YP_001097415.1| - 3.5e-05 24.2 0.3 3.5e-05 24.2 0.3 2.6 3 0 0 3 3 2 1 AAA domain Thymidylate_kin PF02223.17 gi|134045929|ref|YP_001097415.1| - 8e-05 22.4 1.8 0.0026 17.5 0.3 3.0 2 2 0 2 2 2 1 Thymidylate kinase Zeta_toxin PF06414.12 gi|134045929|ref|YP_001097415.1| - 0.0001 21.7 0.2 0.0003 20.1 0.2 1.8 1 1 1 2 2 2 1 Zeta toxin APS_kinase PF01583.20 gi|134045929|ref|YP_001097415.1| - 0.00029 20.8 0.0 0.00089 19.2 0.0 1.8 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|134045929|ref|YP_001097415.1| - 0.00047 20.3 0.0 0.00092 19.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|134045929|ref|YP_001097415.1| - 0.0017 18.8 0.1 0.0038 17.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain MobB PF03205.14 gi|134045929|ref|YP_001097415.1| - 0.0037 17.2 3.2 0.015 15.2 0.1 2.4 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|134045929|ref|YP_001097415.1| - 0.004 16.2 0.7 0.013 14.5 0.7 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 gi|134045929|ref|YP_001097415.1| - 0.011 16.0 0.1 0.021 15.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|134045929|ref|YP_001097415.1| - 0.012 15.7 6.0 0.069 13.2 1.5 3.3 2 2 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Peripla_BP_4 PF13407.6 gi|134045929|ref|YP_001097415.1| - 0.015 14.9 8.0 3.9 7.0 0.0 3.8 1 1 2 4 4 4 0 Periplasmic binding protein domain AAA_22 PF13401.6 gi|134045929|ref|YP_001097415.1| - 0.021 15.1 0.0 0.058 13.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain Efg1 PF10153.9 gi|134045929|ref|YP_001097415.1| - 0.05 14.0 1.0 0.11 12.8 1.0 1.6 1 0 0 1 1 1 0 rRNA-processing protein Efg1 DUF2075 PF09848.9 gi|134045929|ref|YP_001097415.1| - 0.065 12.5 2.2 0.06 12.6 0.3 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.10 gi|134045929|ref|YP_001097415.1| - 0.068 12.6 0.0 0.19 11.2 0.0 1.7 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MMR_HSR1 PF01926.23 gi|134045929|ref|YP_001097415.1| - 0.08 13.0 5.3 0.14 12.3 1.9 2.9 1 1 2 3 3 3 0 50S ribosome-binding GTPase AAA PF00004.29 gi|134045929|ref|YP_001097415.1| - 0.091 13.2 2.6 0.11 12.9 0.5 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PPK2 PF03976.14 gi|134045929|ref|YP_001097415.1| - 0.1 12.1 0.2 0.43 10.1 0.0 2.1 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) AAA_7 PF12775.7 gi|134045929|ref|YP_001097415.1| - 0.14 11.6 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region B5 PF03484.15 gi|134045929|ref|YP_001097415.1| - 0.35 11.2 1.9 1.2 9.5 0.9 2.1 1 1 0 1 1 1 0 tRNA synthetase B5 domain ECF-ribofla_trS PF07155.12 gi|134045930|ref|YP_001097416.1| - 9.9e-06 25.7 18.5 1.8e-05 24.8 18.5 1.4 1 1 0 1 1 1 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 gi|134045930|ref|YP_001097416.1| - 0.00029 21.0 25.1 0.00056 20.0 25.1 1.4 1 1 0 1 1 1 1 ECF transporter, substrate-specific component 5TM-5TMR_LYT PF07694.12 gi|134045930|ref|YP_001097416.1| - 0.073 12.6 16.5 0.14 11.6 16.4 1.7 1 1 0 1 1 1 0 5TMR of 5TMR-LYT Xan_ur_permease PF00860.20 gi|134045931|ref|YP_001097417.1| - 8.8e-94 314.4 44.5 1.1e-93 314.1 44.5 1.1 1 0 0 1 1 1 1 Permease family UPRTase PF14681.6 gi|134045932|ref|YP_001097418.1| - 7.6e-47 159.4 0.0 8.9e-47 159.2 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|134045932|ref|YP_001097418.1| - 2.7e-10 40.0 0.2 3.8e-10 39.5 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|134045932|ref|YP_001097418.1| - 0.06 12.8 0.0 0.12 11.8 0.0 1.5 1 1 0 1 1 1 0 Phosphoribosyl transferase Na_H_antiporter PF03553.14 gi|134045933|ref|YP_001097419.1| - 2.6e-66 223.9 30.8 2.6e-66 223.9 30.8 2.1 2 0 0 2 2 2 1 Na+/H+ antiporter family HTH_3 PF01381.22 gi|134045934|ref|YP_001097420.1| - 4.6e-14 52.2 0.6 1.4e-13 50.7 0.6 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|134045934|ref|YP_001097420.1| - 5.9e-09 35.8 0.3 2.5e-08 33.8 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|134045934|ref|YP_001097420.1| - 2.4e-07 31.0 0.0 4.9e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|134045934|ref|YP_001097420.1| - 0.0067 16.2 0.1 0.015 15.0 0.1 1.6 1 0 0 1 1 1 1 MerR family regulatory protein HTH_26 PF13443.6 gi|134045934|ref|YP_001097420.1| - 0.0089 16.4 0.0 0.14 12.6 0.0 2.5 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_7 PF02796.15 gi|134045934|ref|YP_001097420.1| - 0.0091 16.1 0.2 0.023 14.8 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|134045934|ref|YP_001097420.1| - 0.016 15.1 0.8 0.044 13.7 0.1 2.1 2 0 0 2 2 2 0 HTH domain HTH_25 PF13413.6 gi|134045934|ref|YP_001097420.1| - 0.022 14.6 0.9 0.045 13.6 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|134045934|ref|YP_001097420.1| - 0.066 13.4 0.2 0.31 11.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|134045934|ref|YP_001097420.1| - 0.24 11.2 1.2 23 4.8 0.0 2.7 3 0 0 3 3 3 0 DeoR-like helix-turn-helix domain DUF2124 PF09897.9 gi|134045935|ref|YP_001097421.1| - 1.1e-48 164.7 0.0 1.2e-48 164.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) DUF815 PF05673.13 gi|134045936|ref|YP_001097422.1| - 1.7e-95 318.9 0.2 3.4e-95 318.0 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA PF00004.29 gi|134045936|ref|YP_001097422.1| - 1.5e-07 31.9 0.0 4.9e-07 30.2 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|134045936|ref|YP_001097422.1| - 1.4e-06 28.4 0.7 1.4e-06 28.4 0.7 2.7 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|134045936|ref|YP_001097422.1| - 6e-06 26.7 0.6 0.00038 20.9 0.1 2.7 1 1 2 3 3 3 1 AAA ATPase domain ABC_tran PF00005.27 gi|134045936|ref|YP_001097422.1| - 0.00026 21.5 0.4 0.00078 20.0 0.4 1.9 1 1 0 1 1 1 1 ABC transporter AAA_7 PF12775.7 gi|134045936|ref|YP_001097422.1| - 0.00042 19.9 1.7 0.031 13.8 1.5 2.8 1 1 1 2 2 2 1 P-loop containing dynein motor region Torsin PF06309.11 gi|134045936|ref|YP_001097422.1| - 0.0096 16.0 0.2 0.15 12.1 0.0 2.6 2 1 0 2 2 2 1 Torsin AAA_10 PF12846.7 gi|134045936|ref|YP_001097422.1| - 0.02 13.8 0.0 0.034 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain IstB_IS21 PF01695.17 gi|134045936|ref|YP_001097422.1| - 0.022 14.5 0.0 0.061 13.1 0.0 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein MobB PF03205.14 gi|134045936|ref|YP_001097422.1| - 0.024 14.6 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.18 gi|134045936|ref|YP_001097422.1| - 0.032 13.6 0.0 0.064 12.6 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_24 PF13479.6 gi|134045936|ref|YP_001097422.1| - 0.04 13.6 0.0 0.13 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|134045936|ref|YP_001097422.1| - 0.053 14.1 1.1 0.18 12.4 0.0 2.5 3 1 0 3 3 3 0 AAA domain AAA_22 PF13401.6 gi|134045936|ref|YP_001097422.1| - 0.056 13.7 0.1 0.2 11.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|134045936|ref|YP_001097422.1| - 0.065 13.0 0.1 0.14 11.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|134045936|ref|YP_001097422.1| - 0.08 12.8 0.1 0.22 11.4 0.1 1.7 1 0 0 1 1 1 0 RsgA GTPase Roc PF08477.13 gi|134045936|ref|YP_001097422.1| - 0.089 13.0 0.2 0.25 11.6 0.2 1.8 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Zeta_toxin PF06414.12 gi|134045936|ref|YP_001097422.1| - 0.096 12.0 0.0 0.3 10.3 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin TniB PF05621.11 gi|134045936|ref|YP_001097422.1| - 0.1 12.0 0.0 4.4 6.7 0.0 2.5 2 1 0 2 2 2 0 Bacterial TniB protein VirE PF05272.11 gi|134045936|ref|YP_001097422.1| - 0.1 12.3 0.1 0.2 11.4 0.1 1.5 1 1 0 1 1 1 0 Virulence-associated protein E AAA_5 PF07728.14 gi|134045936|ref|YP_001097422.1| - 0.11 12.5 0.0 0.39 10.7 0.0 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|134045936|ref|YP_001097422.1| - 0.14 12.3 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain Hemocyanin_N PF03722.14 gi|134045936|ref|YP_001097422.1| - 0.18 12.3 1.1 0.54 10.8 0.1 2.3 3 0 0 3 3 2 0 Hemocyanin, all-alpha domain MMR_HSR1 PF01926.23 gi|134045936|ref|YP_001097422.1| - 0.28 11.3 3.0 0.74 9.9 0.3 2.7 2 1 1 3 3 3 0 50S ribosome-binding GTPase DUF87 PF01935.17 gi|134045936|ref|YP_001097422.1| - 7 6.7 11.1 0.38 10.8 0.1 3.0 2 1 1 3 3 3 0 Helicase HerA, central domain TPR_1 PF00515.28 gi|134045937|ref|YP_001097423.1| - 9.2e-86 278.5 61.3 7.8e-11 41.3 0.7 11.2 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_2 PF07719.17 gi|134045937|ref|YP_001097423.1| - 4.6e-82 263.7 43.3 1.3e-08 34.3 1.5 11.2 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_8 PF13181.6 gi|134045937|ref|YP_001097423.1| - 9.5e-55 178.3 56.7 5.9e-06 26.1 0.5 11.2 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_11 PF13414.6 gi|134045937|ref|YP_001097423.1| - 2.2e-46 155.2 45.2 2.3e-08 33.6 0.0 11.0 3 2 8 11 11 11 9 TPR repeat TPR_12 PF13424.6 gi|134045937|ref|YP_001097423.1| - 3.7e-39 132.9 24.3 2.8e-07 30.7 0.2 8.9 2 2 7 9 9 9 9 Tetratricopeptide repeat TPR_17 PF13431.6 gi|134045937|ref|YP_001097423.1| - 3.2e-37 124.2 44.7 8.6e-05 22.7 0.1 11.7 12 0 0 12 12 12 10 Tetratricopeptide repeat TPR_16 PF13432.6 gi|134045937|ref|YP_001097423.1| - 1.1e-34 118.8 0.0 3.4e-07 30.8 0.0 7.0 5 2 2 7 7 7 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|134045937|ref|YP_001097423.1| - 5.5e-28 94.9 20.1 0.031 14.3 0.1 11.1 11 0 0 11 11 11 8 Tetratricopeptide repeat TPR_14 PF13428.6 gi|134045937|ref|YP_001097423.1| - 6.2e-27 92.0 0.0 0.069 14.0 0.0 10.1 3 2 8 11 11 10 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|134045937|ref|YP_001097423.1| - 4.5e-24 84.7 3.3 9.8e-05 22.8 0.0 7.4 4 3 4 8 8 8 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|134045937|ref|YP_001097423.1| - 1.3e-18 66.9 31.9 9.7e-07 28.9 2.7 5.5 2 2 3 5 5 5 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|134045937|ref|YP_001097423.1| - 1.5e-18 66.1 18.1 1.1 10.1 0.0 10.9 11 0 0 11 11 11 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|134045937|ref|YP_001097423.1| - 1.9e-17 63.1 0.0 0.00065 19.8 0.0 6.3 3 1 2 7 7 7 4 Tetratricopeptide repeat NARP1 PF12569.8 gi|134045937|ref|YP_001097423.1| - 2.2e-10 40.1 7.1 0.0048 15.9 0.0 5.7 2 2 4 6 6 6 3 NMDA receptor-regulated protein 1 TPR_10 PF13374.6 gi|134045937|ref|YP_001097423.1| - 2.3e-10 40.0 22.1 0.082 12.8 0.7 8.6 10 0 0 10 10 9 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|134045937|ref|YP_001097423.1| - 9.6e-10 38.4 37.2 0.0011 18.9 0.1 9.2 10 0 0 10 10 9 4 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.6 gi|134045937|ref|YP_001097423.1| - 1.1e-06 28.1 0.2 0.003 16.8 0.0 3.6 2 2 1 3 3 3 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|134045937|ref|YP_001097423.1| - 1.7e-06 28.1 7.4 7.4e-05 22.8 0.2 5.4 1 1 4 6 6 6 1 Domain of Unknown Function (DUF3856) TOM20_plant PF06552.12 gi|134045937|ref|YP_001097423.1| - 6.2e-05 22.8 5.1 17 5.1 0.0 6.0 3 3 1 5 5 5 0 Plant specific mitochondrial import receptor subunit TOM20 MAS20 PF02064.15 gi|134045937|ref|YP_001097423.1| - 0.00063 19.8 0.0 0.26 11.4 0.0 4.0 4 0 0 4 4 4 1 MAS20 protein import receptor HTH_Bact PF18768.1 gi|134045937|ref|YP_001097423.1| - 0.0021 17.6 19.6 0.037 13.6 0.5 7.9 7 2 1 8 8 8 1 Helix-turn-helix bacterial domain YozE_SAM_like PF06855.12 gi|134045937|ref|YP_001097423.1| - 0.004 17.3 14.8 44 4.4 0.3 7.0 7 0 0 7 7 7 0 YozE SAM-like fold Alkyl_sulf_dimr PF14863.6 gi|134045937|ref|YP_001097423.1| - 0.0049 17.3 1.0 36 4.8 0.0 4.4 4 1 1 5 5 4 0 Alkyl sulfatase dimerisation DUF5113 PF17140.4 gi|134045937|ref|YP_001097423.1| - 0.006 16.4 27.8 0.67 9.7 0.3 6.7 3 2 4 7 7 7 2 Domain of unknown function (DUF5113) TPR_3 PF07720.12 gi|134045937|ref|YP_001097423.1| - 0.0071 16.3 29.9 0.3 11.1 0.2 8.4 9 0 0 9 9 9 2 Tetratricopeptide repeat DUF627 PF04781.12 gi|134045937|ref|YP_001097423.1| - 0.0073 16.3 12.7 0.66 10.0 0.0 5.4 6 1 1 7 7 6 1 Protein of unknown function (DUF627) SRP_TPR_like PF17004.5 gi|134045937|ref|YP_001097423.1| - 0.02 14.9 0.4 0.02 14.9 0.4 4.3 2 1 2 4 4 4 0 Putative TPR-like repeat Sel1 PF08238.12 gi|134045937|ref|YP_001097423.1| - 0.021 15.5 27.4 10 7.0 0.0 9.4 10 2 0 10 10 9 0 Sel1 repeat ChAPs PF09295.10 gi|134045937|ref|YP_001097423.1| - 0.025 13.6 3.8 0.23 10.4 0.0 3.3 2 1 0 3 3 3 0 ChAPs (Chs5p-Arf1p-binding proteins) BTAD PF03704.17 gi|134045937|ref|YP_001097423.1| - 0.038 14.4 0.1 5.3 7.5 0.0 2.9 3 1 0 3 3 2 0 Bacterial transcriptional activator domain MIT PF04212.18 gi|134045937|ref|YP_001097423.1| - 0.094 12.8 37.6 10 6.3 0.3 9.5 9 2 1 10 10 10 0 MIT (microtubule interacting and transport) domain NRBF2_MIT PF17169.4 gi|134045937|ref|YP_001097423.1| - 0.16 12.2 3.0 18 5.7 0.1 4.9 6 1 0 6 6 5 0 MIT domain of nuclear receptor-binding factor 2 Prefoldin PF02996.17 gi|134045937|ref|YP_001097423.1| - 0.25 11.3 0.0 0.25 11.3 0.0 3.8 5 0 0 5 5 4 0 Prefoldin subunit Sda PF08970.10 gi|134045937|ref|YP_001097423.1| - 1.8 8.4 16.2 8.7 6.2 0.0 6.7 8 0 0 8 8 7 0 Sporulation inhibitor A TAP_C PF03943.13 gi|134045937|ref|YP_001097423.1| - 7.5 6.3 7.2 21 4.9 0.3 5.2 7 0 0 7 7 7 0 TAP C-terminal domain DUF2196 PF09962.9 gi|134045938|ref|YP_001097424.1| - 1.2e-32 111.7 3.6 1.3e-32 111.6 3.6 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) EamA PF00892.20 gi|134045939|ref|YP_001097425.1| - 5.6e-40 136.7 39.0 8.5e-23 81.0 19.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family NCE101 PF11654.8 gi|134045939|ref|YP_001097425.1| - 0.47 10.2 2.2 0.72 9.6 0.1 2.3 2 0 0 2 2 2 0 Non-classical export protein 1 Ribosomal_S3Ae PF01015.18 gi|134045940|ref|YP_001097426.1| - 3.8e-60 202.9 1.0 5e-60 202.5 1.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Lactamase_B_2 PF12706.7 gi|134045940|ref|YP_001097426.1| - 0.045 13.3 0.1 0.06 12.8 0.1 1.1 1 0 0 1 1 1 0 Beta-lactamase superfamily domain UPF0547 PF10571.9 gi|134045941|ref|YP_001097427.1| - 0.065 13.3 2.4 4.9 7.3 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|134045941|ref|YP_001097427.1| - 0.13 13.1 0.7 0.25 12.1 0.7 1.5 1 0 0 1 1 1 0 zinc-ribbon family Ribosomal_S2 PF00318.20 gi|134045942|ref|YP_001097428.1| - 2.4e-26 92.3 0.0 1.1e-14 54.2 0.0 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Phage_lysozyme PF00959.19 gi|134045942|ref|YP_001097428.1| - 0.13 12.7 0.0 0.23 11.9 0.0 1.4 1 0 0 1 1 1 0 Phage lysozyme Na_Pi_cotrans PF02690.15 gi|134045943|ref|YP_001097429.1| - 4.5e-69 230.9 38.2 2.5e-53 179.9 15.3 2.7 1 1 1 2 2 2 2 Na+/Pi-cotransporter PhoU PF01895.19 gi|134045943|ref|YP_001097429.1| - 2.4e-32 111.2 9.8 8.8e-17 61.3 0.7 2.5 2 0 0 2 2 2 2 PhoU domain DUF3972 PF13118.6 gi|134045943|ref|YP_001097429.1| - 0.11 13.0 14.7 0.39 11.2 9.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3972) Tnp_22_trimer PF17489.2 gi|134045943|ref|YP_001097429.1| - 0.99 9.4 5.3 0.19 11.7 0.3 2.3 2 0 0 2 2 2 0 L1 transposable element trimerization domain DUF2115 PF09888.9 gi|134045944|ref|YP_001097430.1| - 3.9e-44 151.1 2.2 4.3e-44 150.9 2.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) VIT1 PF01988.19 gi|134045945|ref|YP_001097431.1| - 4.4e-17 62.7 16.3 9.6e-13 48.5 3.1 2.0 1 1 1 2 2 2 2 VIT family DUF3810 PF12725.7 gi|134045945|ref|YP_001097431.1| - 0.32 10.3 1.8 0.52 9.6 1.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Sulfate_transp PF00916.20 gi|134045946|ref|YP_001097432.1| - 2e-55 188.1 38.5 1.9e-52 178.3 38.5 2.3 1 1 0 1 1 1 1 Sulfate permease family STAS PF01740.21 gi|134045946|ref|YP_001097432.1| - 2.1e-05 24.1 0.1 4.3e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 STAS domain MFS_MOT1 PF16983.5 gi|134045946|ref|YP_001097432.1| - 0.0014 19.0 3.7 0.0014 19.0 3.7 4.3 4 1 0 4 4 4 2 Molybdate transporter of MFS superfamily STAS_2 PF13466.6 gi|134045946|ref|YP_001097432.1| - 0.12 12.7 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 STAS domain DUF4962 PF16332.5 gi|134045946|ref|YP_001097432.1| - 0.13 10.7 0.2 0.2 10.1 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4962) PAPS_reduct PF01507.19 gi|134045948|ref|YP_001097434.1| - 1e-05 25.7 0.0 3.3e-05 24.0 0.0 1.9 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|134045948|ref|YP_001097434.1| - 0.00014 21.1 0.0 0.0002 20.6 0.0 1.2 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.20 gi|134045948|ref|YP_001097434.1| - 0.00098 18.9 0.0 0.0055 16.5 0.0 2.2 2 1 0 2 2 2 1 PP-loop family ThiI PF02568.14 gi|134045948|ref|YP_001097434.1| - 0.0024 17.5 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|134045948|ref|YP_001097434.1| - 0.0029 17.1 0.0 0.008 15.7 0.0 1.7 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC zf-AD PF07776.15 gi|134045948|ref|YP_001097434.1| - 0.019 15.2 2.1 0.39 11.0 1.5 2.9 2 1 0 2 2 2 0 Zinc-finger associated domain (zf-AD) Diphthami_syn_2 PF01902.17 gi|134045948|ref|YP_001097434.1| - 0.022 14.3 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 Diphthamide synthase QueH PF02677.14 gi|134045948|ref|YP_001097434.1| - 0.028 14.5 0.0 0.075 13.1 0.0 1.7 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH tRNA_Me_trans PF03054.16 gi|134045948|ref|YP_001097434.1| - 0.082 11.7 1.5 0.083 11.7 0.1 1.7 2 1 0 2 2 2 0 tRNA methyl transferase DUF2207 PF09972.9 gi|134045949|ref|YP_001097435.1| - 5.2 5.7 25.0 0.36 9.6 7.1 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Pribosyltran PF00156.27 gi|134045950|ref|YP_001097436.1| - 8.8e-13 48.1 0.0 1.7e-12 47.2 0.0 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|134045950|ref|YP_001097436.1| - 0.16 11.4 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Peptidase_U32 PF01136.19 gi|134045951|ref|YP_001097437.1| - 1.2e-79 266.7 0.1 1.8e-79 266.1 0.1 1.2 1 0 0 1 1 1 1 Peptidase family U32 Peptidase_U32_C PF16325.5 gi|134045951|ref|YP_001097437.1| - 0.0027 17.9 1.7 0.0027 17.9 1.7 2.6 3 0 0 3 3 3 1 Peptidase family U32 C-terminal domain DUF3826 PF12875.7 gi|134045951|ref|YP_001097437.1| - 0.031 14.4 0.2 0.065 13.4 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3826) GTP_EFTU_D2 PF03144.25 gi|134045951|ref|YP_001097437.1| - 0.081 13.3 1.9 0.28 11.6 1.3 2.2 1 1 1 2 2 2 0 Elongation factor Tu domain 2 Cys_box PF17869.1 gi|134045951|ref|YP_001097437.1| - 0.082 13.0 0.4 0.22 11.7 0.4 1.7 1 0 0 1 1 1 0 Anosmin cysteine rich domain GTP_EFTU_D4 PF14578.6 gi|134045951|ref|YP_001097437.1| - 0.19 11.6 0.2 0.19 11.6 0.2 2.5 3 0 0 3 3 3 0 Elongation factor Tu domain 4 Phage_sheath_1N PF17481.2 gi|134045951|ref|YP_001097437.1| - 0.81 10.2 2.4 10 6.6 2.4 2.4 1 1 0 1 1 1 0 Phage tail sheath protein beta-sandwich domain Radical_SAM PF04055.21 gi|134045952|ref|YP_001097438.1| - 5.5e-19 69.2 0.2 8.8e-19 68.5 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Glyco_hydro_67M PF07488.12 gi|134045952|ref|YP_001097438.1| - 0.087 11.9 0.1 0.14 11.2 0.1 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 67 middle domain ACT_6 PF13740.6 gi|134045953|ref|YP_001097439.1| - 1.1e-19 70.1 1.1 1.2e-19 70.0 1.1 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|134045953|ref|YP_001097439.1| - 1e-10 41.2 1.0 1.4e-10 40.7 1.0 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|134045953|ref|YP_001097439.1| - 8.8e-06 26.2 2.6 1.1e-05 25.9 1.9 1.5 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|134045953|ref|YP_001097439.1| - 0.0054 16.5 1.0 0.0092 15.8 0.7 1.6 1 1 0 1 1 1 1 ACT domain Thiolase_C PF02803.18 gi|134045953|ref|YP_001097439.1| - 0.11 12.2 0.1 0.12 12.0 0.1 1.1 1 0 0 1 1 1 0 Thiolase, C-terminal domain TRAPP PF04051.16 gi|134045953|ref|YP_001097439.1| - 0.13 12.0 0.1 1.5 8.5 0.1 1.9 1 1 1 2 2 2 0 Transport protein particle (TRAPP) component Mce4_CUP1 PF11887.8 gi|134045953|ref|YP_001097439.1| - 0.17 11.3 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF2113 PF09886.9 gi|134045955|ref|YP_001097441.1| - 2.2e-56 190.1 5.4 2.5e-56 190.0 5.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) ThiS PF02597.20 gi|134045956|ref|YP_001097442.1| - 3.9e-08 33.8 0.1 4.9e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|134045956|ref|YP_001097442.1| - 0.039 14.0 0.2 0.044 13.8 0.2 1.2 1 0 0 1 1 1 0 ThiS-like ubiquitin IlvN PF07991.12 gi|134045957|ref|YP_001097443.1| - 2.1e-75 251.8 0.3 3e-75 251.3 0.3 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|134045957|ref|YP_001097443.1| - 3.2e-62 209.1 1.4 4.8e-62 208.5 1.4 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.15 gi|134045957|ref|YP_001097443.1| - 4.6e-07 30.1 0.0 9.8e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|134045957|ref|YP_001097443.1| - 3.4e-06 26.5 0.0 6e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|134045957|ref|YP_001097443.1| - 7.4e-06 26.5 0.1 1.8e-05 25.2 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|134045957|ref|YP_001097443.1| - 0.00021 21.4 0.1 0.00062 19.9 0.0 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|134045957|ref|YP_001097443.1| - 0.22 11.5 1.2 6.4 6.7 0.1 3.0 3 1 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AAA_15 PF13175.6 gi|134045958|ref|YP_001097444.1| - 0.00048 19.9 1.0 0.00051 19.9 1.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|134045958|ref|YP_001097444.1| - 0.0011 19.0 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain PRK PF00485.18 gi|134045958|ref|YP_001097444.1| - 0.0013 18.5 0.0 0.0027 17.5 0.0 1.5 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.6 gi|134045958|ref|YP_001097444.1| - 0.0021 17.8 0.0 0.0035 17.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|134045958|ref|YP_001097444.1| - 0.003 17.3 0.0 0.0045 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|134045958|ref|YP_001097444.1| - 0.0033 18.0 0.8 0.0046 17.5 0.8 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|134045958|ref|YP_001097444.1| - 0.004 16.6 0.0 0.007 15.8 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|134045958|ref|YP_001097444.1| - 0.0044 16.7 0.0 0.0068 16.1 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|134045958|ref|YP_001097444.1| - 0.005 17.2 0.0 0.0068 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain Pox_A32 PF04665.12 gi|134045958|ref|YP_001097444.1| - 0.0066 15.9 0.0 0.0092 15.5 0.0 1.3 1 1 0 1 1 1 1 Poxvirus A32 protein AAA PF00004.29 gi|134045958|ref|YP_001097444.1| - 0.0074 16.7 0.4 0.22 11.9 0.4 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|134045958|ref|YP_001097444.1| - 0.011 16.2 0.0 0.02 15.4 0.0 1.5 1 1 0 1 1 1 0 ABC transporter G-alpha PF00503.20 gi|134045958|ref|YP_001097444.1| - 0.017 14.3 0.1 0.025 13.8 0.1 1.4 1 1 0 1 1 1 0 G-protein alpha subunit TrwB_AAD_bind PF10412.9 gi|134045958|ref|YP_001097444.1| - 0.028 13.4 0.0 0.041 12.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 gi|134045958|ref|YP_001097444.1| - 0.03 13.4 0.0 0.041 12.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_28 PF13521.6 gi|134045958|ref|YP_001097444.1| - 0.034 14.4 0.0 0.058 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|134045958|ref|YP_001097444.1| - 0.035 14.4 0.0 0.048 13.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain DAP3 PF10236.9 gi|134045958|ref|YP_001097444.1| - 0.042 13.0 0.1 0.13 11.4 0.0 1.7 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 ResIII PF04851.15 gi|134045958|ref|YP_001097444.1| - 0.043 13.8 0.3 0.054 13.5 0.3 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_18 PF13238.6 gi|134045958|ref|YP_001097444.1| - 0.044 14.3 0.0 0.068 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|134045958|ref|YP_001097444.1| - 0.051 12.8 0.0 0.059 12.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain FtsK_SpoIIIE PF01580.18 gi|134045958|ref|YP_001097444.1| - 0.066 12.6 0.2 0.12 11.7 0.0 1.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family NACHT PF05729.12 gi|134045958|ref|YP_001097444.1| - 0.072 13.0 0.0 0.13 12.1 0.0 1.4 1 1 0 1 1 1 0 NACHT domain TniB PF05621.11 gi|134045958|ref|YP_001097444.1| - 0.092 12.1 0.0 0.25 10.7 0.0 1.7 2 0 0 2 2 2 0 Bacterial TniB protein ATP_bind_1 PF03029.17 gi|134045958|ref|YP_001097444.1| - 0.11 12.2 0.1 0.23 11.2 0.1 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 gi|134045958|ref|YP_001097444.1| - 0.13 12.7 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase MlaC PF05494.12 gi|134045960|ref|YP_001097446.1| - 0.018 14.8 0.7 0.03 14.1 0.7 1.4 1 0 0 1 1 1 0 MlaC protein MgtE PF01769.16 gi|134045960|ref|YP_001097446.1| - 0.029 14.8 1.8 0.046 14.1 1.8 1.2 1 0 0 1 1 1 0 Divalent cation transporter TruB_N PF01509.18 gi|134045960|ref|YP_001097446.1| - 0.044 14.2 2.1 0.076 13.4 2.1 1.3 1 0 0 1 1 1 0 TruB family pseudouridylate synthase (N terminal domain) DUF5074 PF16819.5 gi|134045961|ref|YP_001097447.1| - 0.027 14.5 2.2 0.058 13.4 1.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF5074) NusG_II PF07009.11 gi|134045961|ref|YP_001097447.1| - 0.15 12.3 0.9 0.41 10.9 0.2 2.2 1 1 1 2 2 2 0 NusG domain II Baculo_PEP_C PF04513.12 gi|134045964|ref|YP_001097450.1| - 3.9e-05 23.7 5.2 0.00027 21.0 4.3 2.1 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Collagen_mid PF15984.5 gi|134045964|ref|YP_001097450.1| - 0.00014 21.7 12.1 0.004 16.9 13.8 2.0 2 0 0 2 2 2 1 Bacterial collagen, middle region ApoLp-III PF07464.11 gi|134045964|ref|YP_001097450.1| - 0.0017 18.5 1.0 0.007 16.5 1.6 1.6 2 0 0 2 2 2 1 Apolipophorin-III precursor (apoLp-III) Sec10 PF07393.11 gi|134045964|ref|YP_001097450.1| - 0.006 15.1 0.1 0.0079 14.7 0.1 1.1 1 0 0 1 1 1 1 Exocyst complex component Sec10 ATG_C PF09333.11 gi|134045964|ref|YP_001097450.1| - 0.0088 16.4 0.1 0.018 15.4 0.1 1.5 1 0 0 1 1 1 1 Autophagy-related protein C terminal domain REF PF05755.12 gi|134045964|ref|YP_001097450.1| - 0.0096 15.8 0.1 0.023 14.5 0.2 1.6 2 0 0 2 2 2 1 Rubber elongation factor protein (REF) Exo70 PF03081.15 gi|134045964|ref|YP_001097450.1| - 0.083 11.9 2.4 0.13 11.3 2.4 1.3 1 0 0 1 1 1 0 Exo70 exocyst complex subunit DUF1664 PF07889.12 gi|134045964|ref|YP_001097450.1| - 0.12 12.4 1.2 0.37 10.8 1.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Phasin PF05597.11 gi|134045964|ref|YP_001097450.1| - 0.71 9.9 2.1 2.3 8.2 0.4 1.8 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Tape_meas_lam_C PF09718.10 gi|134045964|ref|YP_001097450.1| - 1.1 9.4 12.4 0.38 10.9 4.3 2.9 2 1 1 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Chlorosome_CsmC PF11098.8 gi|134045964|ref|YP_001097450.1| - 1.2 9.1 14.9 2.2 8.2 14.9 1.4 1 0 0 1 1 1 0 Chlorosome envelope protein C Tmemb_cc2 PF10267.9 gi|134045964|ref|YP_001097450.1| - 1.3 8.1 3.4 1.4 7.9 3.4 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Prominin PF05478.11 gi|134045964|ref|YP_001097450.1| - 2.5 5.9 16.1 0.045 11.7 1.1 2.9 2 1 1 3 3 3 0 Prominin SprA-related PF12118.8 gi|134045964|ref|YP_001097450.1| - 2.6 7.1 25.9 3.4 6.7 25.9 1.1 1 0 0 1 1 1 0 SprA-related family Gly-zipper_Omp PF13488.6 gi|134045965|ref|YP_001097451.1| - 0.11 12.5 1.0 0.11 12.5 1.0 2.3 2 1 0 2 2 2 0 Glycine zipper DUF2892 PF11127.8 gi|134045965|ref|YP_001097451.1| - 7.5 6.7 10.7 1.5 8.9 4.4 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2892) DUF3611 PF12263.8 gi|134045968|ref|YP_001097454.1| - 0.017 15.0 0.5 0.021 14.7 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3611) DUF5357 PF17310.2 gi|134045969|ref|YP_001097455.1| - 0.003 16.2 0.0 0.0035 16.0 0.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5357) HTH_Mga PF08280.11 gi|134045971|ref|YP_001097457.1| - 0.012 15.7 4.5 2.3 8.3 0.0 3.8 2 1 2 4 4 4 0 M protein trans-acting positive regulator (MGA) HTH domain Acetyltransf_11 PF13720.6 gi|134045971|ref|YP_001097457.1| - 0.1 13.1 0.8 2.3 8.7 0.1 2.1 2 0 0 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DUF3890 PF13029.6 gi|134045971|ref|YP_001097457.1| - 1.8 9.1 8.1 12 6.5 1.9 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3890) DEAD PF00270.29 gi|134045972|ref|YP_001097458.1| - 1e-24 87.2 0.0 2.5e-24 86.0 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|134045972|ref|YP_001097458.1| - 2e-14 54.0 0.0 4.1e-14 52.9 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|134045972|ref|YP_001097458.1| - 9e-08 32.4 0.7 8.1e-07 29.4 0.1 2.7 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|134045972|ref|YP_001097458.1| - 5.2e-07 30.2 0.7 2.4e-06 28.1 0.3 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|134045972|ref|YP_001097458.1| - 9.5e-07 28.5 0.2 1.4e-05 24.8 0.0 2.8 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|134045972|ref|YP_001097458.1| - 0.0029 17.8 0.1 0.015 15.5 0.0 2.2 2 0 0 2 2 2 1 Pathogenicity locus HHH_4 PF14490.6 gi|134045972|ref|YP_001097458.1| - 0.027 14.5 0.0 0.086 12.8 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain HHH PF00633.23 gi|134045972|ref|YP_001097458.1| - 0.034 14.0 0.1 0.54 10.2 0.0 3.1 3 1 0 3 3 3 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|134045972|ref|YP_001097458.1| - 0.29 11.5 1.3 4.9 7.7 0.1 3.0 3 0 0 3 3 3 0 IMS family HHH motif Arc_PepC_II PF06847.11 gi|134045973|ref|YP_001097459.1| - 0.15 12.6 0.7 43 4.7 0.1 3.2 3 0 0 3 3 3 0 Archaeal Peptidase A24 C-terminus Type II zf-C2H2_12 PF18658.1 gi|134045973|ref|YP_001097459.1| - 0.35 10.5 1.9 0.72 9.5 1.9 1.5 1 0 0 1 1 1 0 Zinc-finger C2H2-type CRC_subunit PF08624.10 gi|134045976|ref|YP_001097462.1| - 0.052 14.0 0.2 0.092 13.2 0.1 1.6 1 1 0 1 1 1 0 Chromatin remodelling complex Rsc7/Swp82 subunit MarR_2 PF12802.7 gi|134045977|ref|YP_001097463.1| - 9.1e-05 22.3 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|134045977|ref|YP_001097463.1| - 9.1e-05 22.3 0.1 0.00013 21.8 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.7 gi|134045977|ref|YP_001097463.1| - 0.0017 18.3 0.0 0.0027 17.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain RPA_C PF08784.11 gi|134045977|ref|YP_001097463.1| - 0.0022 18.6 0.1 0.0098 16.5 0.0 1.8 2 0 0 2 2 2 1 Replication protein A C terminal B-block_TFIIIC PF04182.12 gi|134045977|ref|YP_001097463.1| - 0.0024 18.0 0.0 0.0033 17.6 0.0 1.5 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_34 PF13601.6 gi|134045977|ref|YP_001097463.1| - 0.006 16.7 0.0 0.0095 16.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|134045977|ref|YP_001097463.1| - 0.012 15.4 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix MarR PF01047.22 gi|134045977|ref|YP_001097463.1| - 0.024 14.6 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 MarR family PadR PF03551.14 gi|134045977|ref|YP_001097463.1| - 0.092 12.7 0.1 0.6 10.1 0.0 2.3 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_52 PF18576.1 gi|134045980|ref|YP_001097466.1| - 0.028 14.6 0.2 0.028 14.6 0.2 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|134045980|ref|YP_001097466.1| - 0.039 14.3 0.1 0.074 13.4 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF968 PF06147.11 gi|134045980|ref|YP_001097466.1| - 0.089 13.0 1.1 0.76 10.0 1.2 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF968) WYL PF13280.6 gi|134045981|ref|YP_001097467.1| - 0.00018 21.6 0.0 0.00021 21.4 0.0 1.0 1 0 0 1 1 1 1 WYL domain HTH_24 PF13412.6 gi|134045983|ref|YP_001097469.1| - 1.2e-05 24.7 0.1 1.7e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|134045983|ref|YP_001097469.1| - 9.3e-05 22.5 0.1 0.00012 22.2 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|134045983|ref|YP_001097469.1| - 0.00022 21.1 0.2 0.00037 20.4 0.2 1.4 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_11 PF08279.12 gi|134045983|ref|YP_001097469.1| - 0.00043 20.2 0.0 0.00078 19.3 0.0 1.5 1 1 0 1 1 1 1 HTH domain HTH_45 PF14947.6 gi|134045983|ref|YP_001097469.1| - 0.0017 18.3 0.5 0.0031 17.5 0.5 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix LexA_DNA_bind PF01726.16 gi|134045983|ref|YP_001097469.1| - 0.0075 16.0 0.0 0.016 15.0 0.0 1.5 2 0 0 2 2 2 1 LexA DNA binding domain HTH_5 PF01022.20 gi|134045983|ref|YP_001097469.1| - 0.022 14.6 0.1 0.057 13.3 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|134045983|ref|YP_001097469.1| - 0.08 12.9 0.0 0.23 11.4 0.0 1.6 2 0 0 2 2 2 0 MarR family HTH_22 PF13309.6 gi|134045983|ref|YP_001097469.1| - 0.11 12.5 0.3 9.8 6.3 0.0 2.2 2 0 0 2 2 2 0 HTH domain Put_DNA-bind_N PF06971.13 gi|134045983|ref|YP_001097469.1| - 0.13 12.3 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus FeoC PF09012.10 gi|134045983|ref|YP_001097469.1| - 0.13 12.3 0.0 0.19 11.8 0.0 1.3 1 1 0 1 1 1 0 FeoC like transcriptional regulator HTH_20 PF12840.7 gi|134045983|ref|YP_001097469.1| - 0.17 12.0 0.0 0.26 11.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_integrase PF00589.22 gi|134045984|ref|YP_001097470.1| - 5.2e-33 114.2 0.0 8.4e-33 113.6 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|134045984|ref|YP_001097470.1| - 1.9e-09 37.9 2.6 1.8e-07 31.5 2.2 3.1 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|134045984|ref|YP_001097470.1| - 8e-07 29.3 4.2 4.4e-05 23.7 2.0 2.6 2 1 0 2 2 2 2 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|134045984|ref|YP_001097470.1| - 4.1e-05 23.8 0.2 0.00056 20.2 0.2 2.6 2 2 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain DUF87 PF01935.17 gi|134045984|ref|YP_001097470.1| - 0.013 15.6 0.1 0.022 14.9 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain Stealth_CR2 PF11380.8 gi|134045984|ref|YP_001097470.1| - 1 9.6 6.3 0.59 10.3 0.1 3.0 2 1 1 3 3 3 0 Stealth protein CR2, conserved region 2 EF-hand_7 PF13499.6 gi|134045985|ref|YP_001097471.1| - 0.1 13.1 4.1 0.28 11.7 2.5 2.5 2 1 0 2 2 2 0 EF-hand domain pair TACC_C PF05010.14 gi|134045985|ref|YP_001097471.1| - 0.25 11.1 4.1 0.32 10.7 4.1 1.1 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal SBF PF01758.16 gi|134045986|ref|YP_001097472.1| - 1.6e-41 142.2 20.3 1.6e-41 142.2 20.3 1.9 2 0 0 2 2 2 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|134045986|ref|YP_001097472.1| - 9.1e-19 67.9 19.8 1.1e-18 67.7 19.8 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.18 gi|134045986|ref|YP_001097472.1| - 7e-06 24.7 8.5 7e-06 24.7 8.5 2.7 1 1 1 3 3 3 2 Membrane transport protein zf-RRPl_C4 PF17026.5 gi|134045987|ref|YP_001097473.1| - 0.033 14.3 0.1 0.055 13.6 0.1 1.5 1 0 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type ALS_ss_C PF10369.9 gi|134045988|ref|YP_001097474.1| - 6.4e-29 100.0 1.0 1e-27 96.1 0.1 2.1 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|134045988|ref|YP_001097474.1| - 7.2e-19 67.4 0.6 1.3e-18 66.6 0.2 1.6 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|134045988|ref|YP_001097474.1| - 3.5e-14 52.3 0.1 7e-14 51.3 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|134045988|ref|YP_001097474.1| - 0.00045 20.8 0.4 0.00092 19.8 0.4 1.5 1 0 0 1 1 1 1 ACT domain Acylphosphatase PF00708.18 gi|134045988|ref|YP_001097474.1| - 0.00089 19.6 0.5 0.49 10.8 0.2 2.2 2 0 0 2 2 2 2 Acylphosphatase Saccharop_dh_N PF04455.12 gi|134045988|ref|YP_001097474.1| - 0.0086 16.5 0.1 0.02 15.3 0.1 1.7 2 0 0 2 2 2 1 LOR/SDH bifunctional enzyme conserved region SIMPL PF04402.14 gi|134045988|ref|YP_001097474.1| - 0.02 15.3 0.6 0.027 14.9 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF541) TPP_enzyme_N PF02776.18 gi|134045989|ref|YP_001097475.1| - 2.7e-61 206.2 0.2 1.5e-58 197.2 0.2 2.7 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|134045989|ref|YP_001097475.1| - 1.1e-51 174.7 1.2 2.7e-51 173.4 0.0 2.3 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|134045989|ref|YP_001097475.1| - 2e-51 173.3 0.1 5.7e-51 171.8 0.1 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|134045989|ref|YP_001097475.1| - 0.0031 17.3 0.9 0.027 14.3 0.0 2.4 2 0 0 2 2 2 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Strumpellin PF10266.9 gi|134045989|ref|YP_001097475.1| - 0.07 10.8 0.6 0.096 10.4 0.6 1.0 1 0 0 1 1 1 0 Hereditary spastic paraplegia protein strumpellin Carbam_trans_C PF16861.5 gi|134045990|ref|YP_001097476.1| - 1.2e-55 187.7 0.0 2.4e-55 186.7 0.0 1.5 2 0 0 2 2 2 1 Carbamoyltransferase C-terminus Carbam_trans_N PF02543.15 gi|134045990|ref|YP_001097476.1| - 1.9e-41 142.8 0.1 2.5e-35 122.8 0.1 2.2 1 1 1 2 2 2 2 Carbamoyltransferase N-terminus Peptidase_M22 PF00814.25 gi|134045990|ref|YP_001097476.1| - 1.2e-09 38.2 0.0 1.9e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family Prefoldin_3 PF13758.6 gi|134045990|ref|YP_001097476.1| - 0.096 12.8 0.5 0.43 10.7 0.1 2.3 2 0 0 2 2 2 0 Prefoldin subunit RTC PF01137.21 gi|134045991|ref|YP_001097477.1| - 1.7e-78 262.9 0.0 1.9e-78 262.7 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|134045991|ref|YP_001097477.1| - 1.1e-07 32.3 0.0 3.1e-07 30.9 0.0 1.7 2 0 0 2 2 2 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Archease PF01951.16 gi|134045992|ref|YP_001097478.1| - 1.4e-38 132.2 0.6 1.6e-38 132.1 0.6 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Ldh_1_N PF00056.23 gi|134045994|ref|YP_001097480.1| - 8.8e-28 97.2 1.1 1.2e-27 96.7 1.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|134045994|ref|YP_001097480.1| - 4.3e-22 78.8 0.0 7.2e-22 78.1 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Semialdhyde_dh PF01118.24 gi|134045994|ref|YP_001097480.1| - 0.00015 22.2 0.0 0.00035 21.0 0.0 1.7 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Glyco_hydro_4C PF11975.8 gi|134045994|ref|YP_001097480.1| - 0.019 15.1 0.0 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain Cation_efflux PF01545.21 gi|134045995|ref|YP_001097481.1| - 1.1e-50 172.2 4.9 1.3e-50 171.9 4.9 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|134045995|ref|YP_001097481.1| - 4.9e-23 81.1 5.6 8.7e-23 80.2 5.6 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter UbiA PF01040.18 gi|134045995|ref|YP_001097481.1| - 0.022 14.1 0.0 2.8 7.2 0.0 2.2 2 0 0 2 2 2 0 UbiA prenyltransferase family DUF2207 PF09972.9 gi|134045995|ref|YP_001097481.1| - 0.16 10.7 1.4 0.22 10.2 0.6 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF354 PF04007.12 gi|134045996|ref|YP_001097482.1| - 6.5e-122 406.8 2.2 7.2e-122 406.7 2.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) LpxB PF02684.15 gi|134045996|ref|YP_001097482.1| - 0.057 12.3 0.0 0.088 11.6 0.0 1.3 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase Ribosomal_L7Ae PF01248.26 gi|134045998|ref|YP_001097484.1| - 8.4e-25 86.3 2.7 1e-24 86.1 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|134045998|ref|YP_001097484.1| - 0.018 14.9 0.1 0.026 14.4 0.1 1.3 1 0 0 1 1 1 0 PELOTA RNA binding domain Ribosomal_S28e PF01200.18 gi|134045999|ref|YP_001097485.1| - 1.1e-29 102.2 1.7 1.2e-29 102.0 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|134046000|ref|YP_001097486.1| - 8.7e-23 80.3 5.5 9.2e-23 80.3 5.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|134046000|ref|YP_001097486.1| - 0.00031 20.6 8.4 0.00048 20.0 8.4 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|134046000|ref|YP_001097486.1| - 0.0093 16.1 2.2 0.015 15.3 2.2 1.4 1 0 0 1 1 1 1 YHS domain YacG PF03884.14 gi|134046000|ref|YP_001097486.1| - 0.039 13.7 2.0 0.06 13.1 2.0 1.6 1 1 0 1 1 1 0 DNA gyrase inhibitor YacG DUF2116 PF09889.9 gi|134046000|ref|YP_001097486.1| - 2.1 8.4 5.1 1.7 8.7 2.1 2.1 1 1 1 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Beta_propel PF09826.9 gi|134046001|ref|YP_001097487.1| - 3.7e-118 395.6 8.3 1.9e-117 393.3 8.3 2.1 1 1 0 1 1 1 1 Beta propeller domain Inhibitor_I42 PF09394.10 gi|134046001|ref|YP_001097487.1| - 1.2e-24 86.5 0.8 4e-24 84.8 0.8 2.0 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 CPSF_A PF03178.15 gi|134046001|ref|YP_001097487.1| - 0.0078 15.6 0.1 0.014 14.7 0.1 1.4 1 0 0 1 1 1 1 CPSF A subunit region CHASE4 PF05228.13 gi|134046001|ref|YP_001097487.1| - 0.055 13.7 1.0 0.44 10.8 0.5 2.2 2 0 0 2 2 2 0 CHASE4 domain HTH_5 PF01022.20 gi|134046002|ref|YP_001097488.1| - 1.1e-11 44.4 1.4 3.4e-11 42.8 1.4 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|134046002|ref|YP_001097488.1| - 1.2e-10 41.3 0.0 2.4e-09 37.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|134046002|ref|YP_001097488.1| - 1.2e-06 28.2 0.0 2.3e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|134046002|ref|YP_001097488.1| - 7.9e-06 25.8 1.0 2.2e-05 24.4 1.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|134046002|ref|YP_001097488.1| - 9.1e-06 25.1 0.1 2.6e-05 23.7 0.1 1.8 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|134046002|ref|YP_001097488.1| - 3e-05 23.8 0.0 5.1e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 gi|134046002|ref|YP_001097488.1| - 5e-05 23.6 0.1 8.4e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_27 PF13463.6 gi|134046002|ref|YP_001097488.1| - 7.7e-05 23.1 0.1 0.00013 22.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|134046002|ref|YP_001097488.1| - 9.6e-05 22.2 0.2 0.00025 20.9 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|134046002|ref|YP_001097488.1| - 0.00018 21.3 0.1 0.00029 20.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) PuR_N PF09182.10 gi|134046002|ref|YP_001097488.1| - 0.00041 20.2 0.1 0.15 12.1 0.0 2.3 2 0 0 2 2 2 1 Bacterial purine repressor, N-terminal HTH_11 PF08279.12 gi|134046002|ref|YP_001097488.1| - 0.0011 18.9 0.2 0.0031 17.4 0.2 1.8 1 0 0 1 1 1 1 HTH domain HTH_17 PF12728.7 gi|134046002|ref|YP_001097488.1| - 0.0016 18.6 0.1 0.0035 17.5 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|134046002|ref|YP_001097488.1| - 0.0037 17.0 0.1 0.009 15.8 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain MarR PF01047.22 gi|134046002|ref|YP_001097488.1| - 0.0043 17.0 0.1 0.0087 16.0 0.1 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|134046002|ref|YP_001097488.1| - 0.0062 16.7 0.6 0.011 15.9 0.1 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_9 PF08221.11 gi|134046002|ref|YP_001097488.1| - 0.018 15.1 0.2 0.043 13.9 0.2 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_38 PF13936.6 gi|134046002|ref|YP_001097488.1| - 0.019 14.7 0.2 0.029 14.1 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|134046002|ref|YP_001097488.1| - 0.02 15.4 0.0 0.033 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|134046002|ref|YP_001097488.1| - 0.02 15.3 0.1 0.064 13.7 0.1 1.8 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_41 PF14502.6 gi|134046002|ref|YP_001097488.1| - 0.021 14.5 0.7 0.037 13.7 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain Type2_restr_D3 PF16902.5 gi|134046002|ref|YP_001097488.1| - 0.024 14.6 0.4 1.9 8.4 0.0 2.4 2 0 0 2 2 2 0 Type-2 restriction enzyme D3 domain PadR PF03551.14 gi|134046002|ref|YP_001097488.1| - 0.028 14.4 0.3 0.064 13.2 0.3 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family RepL PF05732.11 gi|134046002|ref|YP_001097488.1| - 0.028 13.8 0.0 0.048 13.1 0.0 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_AsnC-type PF13404.6 gi|134046002|ref|YP_001097488.1| - 0.028 14.2 0.0 0.22 11.4 0.0 2.2 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain SpoIIID PF12116.8 gi|134046002|ref|YP_001097488.1| - 0.031 14.4 0.1 0.063 13.4 0.1 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D HTH_Mga PF08280.11 gi|134046002|ref|YP_001097488.1| - 0.044 13.8 0.5 0.98 9.5 0.2 2.6 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain DUF2513 PF10711.9 gi|134046002|ref|YP_001097488.1| - 0.054 13.8 0.1 0.098 13.0 0.1 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF742 PF05331.11 gi|134046002|ref|YP_001097488.1| - 0.078 12.8 0.0 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF742) Mnd1 PF03962.15 gi|134046002|ref|YP_001097488.1| - 0.082 13.2 0.1 0.17 12.2 0.1 1.6 1 0 0 1 1 1 0 Mnd1 HTH domain DUF2250 PF10007.9 gi|134046002|ref|YP_001097488.1| - 0.085 13.0 4.3 0.57 10.3 2.8 2.5 2 1 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_DeoR PF08220.12 gi|134046002|ref|YP_001097488.1| - 0.1 12.4 0.2 0.46 10.3 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain RP-C PF03428.13 gi|134046002|ref|YP_001097488.1| - 0.1 12.2 0.0 0.36 10.4 0.0 1.8 2 0 0 2 2 2 0 Replication protein C N-terminal domain SH PF01445.17 gi|134046002|ref|YP_001097488.1| - 0.14 12.2 1.9 0.3 11.1 1.9 1.6 1 0 0 1 1 1 0 Viral small hydrophobic protein HTH_23 PF13384.6 gi|134046002|ref|YP_001097488.1| - 0.18 11.6 0.0 0.35 10.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain NPCBM_assoc PF10633.9 gi|134046003|ref|YP_001097489.1| - 0.0013 18.9 0.0 0.078 13.2 0.0 3.1 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|134046003|ref|YP_001097489.1| - 0.002 18.3 4.9 0.0076 16.5 0.2 3.1 3 1 0 3 3 3 1 CARDB TNFR_16_TM PF18422.1 gi|134046003|ref|YP_001097489.1| - 0.0036 17.2 0.5 0.0036 17.2 0.5 1.7 2 0 0 2 2 2 1 Tumor necrosis factor receptor member 16 trans-membrane domain FeoB_associated PF12669.7 gi|134046003|ref|YP_001097489.1| - 0.0038 17.6 0.8 0.0075 16.7 0.8 1.3 1 0 0 1 1 1 1 FeoB-associated Cys-rich membrane protein Arrestin_C PF02752.22 gi|134046003|ref|YP_001097489.1| - 0.0075 16.7 1.2 0.015 15.7 1.2 1.6 1 1 0 1 1 1 1 Arrestin (or S-antigen), C-terminal domain PMP1_2 PF08114.11 gi|134046003|ref|YP_001097489.1| - 0.032 14.0 0.5 0.07 12.9 0.5 1.5 1 0 0 1 1 1 0 ATPase proteolipid family Adeno_GP19K PF04881.13 gi|134046003|ref|YP_001097489.1| - 0.07 13.1 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Adenovirus GP19K DUF2393 PF09624.10 gi|134046003|ref|YP_001097489.1| - 0.095 12.7 0.9 9 6.3 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2393) SARAF PF06682.12 gi|134046003|ref|YP_001097489.1| - 0.17 11.5 0.1 0.25 11.0 0.1 1.2 1 0 0 1 1 1 0 SOCE-associated regulatory factor of calcium homoeostasis MarR_2 PF12802.7 gi|134046004|ref|YP_001097490.1| - 7.8e-06 25.7 0.0 1.2e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|134046004|ref|YP_001097490.1| - 0.00024 21.0 0.0 0.00044 20.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|134046004|ref|YP_001097490.1| - 0.00052 20.2 0.0 0.0013 18.8 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|134046004|ref|YP_001097490.1| - 0.02 14.8 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|134046004|ref|YP_001097490.1| - 0.029 13.9 0.2 0.068 12.7 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|134046004|ref|YP_001097490.1| - 0.048 13.6 0.0 0.088 12.7 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PuR_N PF09182.10 gi|134046004|ref|YP_001097490.1| - 0.077 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal HTH_27 PF13463.6 gi|134046004|ref|YP_001097490.1| - 0.089 13.3 0.0 0.22 12.0 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|134046004|ref|YP_001097490.1| - 0.11 12.5 0.0 0.46 10.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|134046004|ref|YP_001097490.1| - 0.16 11.8 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain ABC_tran PF00005.27 gi|134046005|ref|YP_001097491.1| - 3.9e-32 111.6 0.1 5.6e-32 111.1 0.1 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|134046005|ref|YP_001097491.1| - 2.2e-09 37.1 1.2 2.2e-08 33.8 1.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|134046005|ref|YP_001097491.1| - 5.5e-08 33.0 0.0 0.002 18.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|134046005|ref|YP_001097491.1| - 3.5e-05 23.8 0.3 8e-05 22.6 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase NTPase_1 PF03266.15 gi|134046005|ref|YP_001097491.1| - 0.00021 21.2 1.5 0.38 10.7 0.2 2.2 2 0 0 2 2 2 2 NTPase RNA_helicase PF00910.22 gi|134046005|ref|YP_001097491.1| - 0.00029 21.2 0.1 0.0013 19.1 0.0 2.0 2 0 0 2 2 2 1 RNA helicase Rad17 PF03215.15 gi|134046005|ref|YP_001097491.1| - 0.00038 20.4 0.0 0.0011 18.9 0.0 1.7 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|134046005|ref|YP_001097491.1| - 0.00041 20.0 0.0 0.00079 19.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|134046005|ref|YP_001097491.1| - 0.00067 19.9 0.2 0.0068 16.7 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|134046005|ref|YP_001097491.1| - 0.0014 18.2 0.1 0.019 14.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|134046005|ref|YP_001097491.1| - 0.0026 17.5 0.5 0.38 10.4 0.1 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|134046005|ref|YP_001097491.1| - 0.0037 17.7 0.0 0.0048 17.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|134046005|ref|YP_001097491.1| - 0.0055 16.6 0.2 0.01 15.8 0.1 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|134046005|ref|YP_001097491.1| - 0.013 15.6 0.2 0.021 14.9 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.29 gi|134046005|ref|YP_001097491.1| - 0.015 15.7 0.1 1.3 9.4 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|134046005|ref|YP_001097491.1| - 0.019 15.0 0.0 0.045 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|134046005|ref|YP_001097491.1| - 0.023 15.2 0.5 0.038 14.5 0.5 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|134046005|ref|YP_001097491.1| - 0.025 15.2 0.6 0.14 12.7 0.2 2.2 1 1 1 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|134046005|ref|YP_001097491.1| - 0.025 14.3 0.1 0.16 11.7 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein Septin PF00735.18 gi|134046005|ref|YP_001097491.1| - 0.03 13.6 0.0 0.051 12.9 0.0 1.3 1 0 0 1 1 1 0 Septin AAA_28 PF13521.6 gi|134046005|ref|YP_001097491.1| - 0.084 13.1 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|134046005|ref|YP_001097491.1| - 0.1 12.1 0.1 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|134046005|ref|YP_001097491.1| - 0.12 12.0 0.0 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|134046005|ref|YP_001097491.1| - 0.14 12.4 0.1 1.2 9.4 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MacB_PCD PF12704.7 gi|134046006|ref|YP_001097492.1| - 2.2e-32 113.0 0.3 2.2e-32 113.0 0.3 2.2 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|134046006|ref|YP_001097492.1| - 8.3e-13 48.6 22.7 7e-12 45.7 6.7 3.6 4 0 0 4 4 4 2 FtsX-like permease family TMEM237 PF15383.6 gi|134046006|ref|YP_001097492.1| - 0.045 12.9 0.3 0.18 10.9 0.0 1.9 2 0 0 2 2 2 0 Transmembrane protein 237 Phage_holin_3_6 PF07332.11 gi|134046006|ref|YP_001097492.1| - 0.63 10.1 7.9 22 5.1 0.1 3.2 3 0 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III Rubrerythrin PF02915.17 gi|134046007|ref|YP_001097493.1| - 9.2e-36 123.3 8.7 1.1e-35 123.0 8.7 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|134046007|ref|YP_001097493.1| - 1.3e-11 44.6 3.7 1.6e-11 44.3 3.7 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.12 gi|134046007|ref|YP_001097493.1| - 0.00042 20.4 5.5 0.063 13.3 0.2 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF892) tRNA-synt_1g PF09334.11 gi|134046007|ref|YP_001097493.1| - 0.0007 18.5 1.5 0.00094 18.0 1.5 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (M) zinc_ribbon_2 PF13240.6 gi|134046007|ref|YP_001097493.1| - 0.0015 18.2 3.9 0.0031 17.2 3.9 1.6 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|134046007|ref|YP_001097493.1| - 0.0019 18.2 0.6 0.0036 17.3 0.6 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FA_desaturase_2 PF03405.14 gi|134046007|ref|YP_001097493.1| - 0.002 17.0 1.3 0.14 10.9 0.3 2.1 2 0 0 2 2 2 2 Fatty acid desaturase DZR PF12773.7 gi|134046007|ref|YP_001097493.1| - 0.0055 16.7 3.0 0.0089 16.0 3.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon Tex_N PF09371.10 gi|134046007|ref|YP_001097493.1| - 0.012 15.3 2.0 1.4 8.5 0.1 2.1 2 0 0 2 2 2 0 Tex-like protein N-terminal domain FCH PF00611.23 gi|134046007|ref|YP_001097493.1| - 0.03 14.6 0.5 3.9 7.8 0.0 2.3 2 0 0 2 2 2 0 Fes/CIP4, and EFC/F-BAR homology domain zf-C2HC5 PF06221.13 gi|134046007|ref|YP_001097493.1| - 0.056 13.4 1.2 0.095 12.7 1.2 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF4972 PF16342.5 gi|134046007|ref|YP_001097493.1| - 0.075 12.7 0.6 0.12 12.1 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4972) DNA_RNApol_7kD PF03604.13 gi|134046007|ref|YP_001097493.1| - 0.077 12.7 3.6 0.26 11.0 3.3 1.9 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Arfaptin PF06456.13 gi|134046007|ref|YP_001097493.1| - 0.084 12.4 1.7 0.56 9.7 0.2 2.0 2 0 0 2 2 2 0 Arfaptin-like domain COQ7 PF03232.13 gi|134046007|ref|YP_001097493.1| - 0.13 12.0 4.1 0.45 10.3 0.2 2.2 1 1 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 OrfB_Zn_ribbon PF07282.11 gi|134046007|ref|YP_001097493.1| - 0.16 11.9 1.6 0.41 10.6 1.6 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.18 gi|134046007|ref|YP_001097493.1| - 0.17 11.8 4.5 0.75 9.7 1.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|134046007|ref|YP_001097493.1| - 0.19 11.7 4.2 1.5 8.8 0.8 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain PEPcase_2 PF14010.6 gi|134046007|ref|YP_001097493.1| - 0.25 9.8 2.9 0.29 9.6 0.9 1.7 1 1 1 2 2 2 0 Phosphoenolpyruvate carboxylase zf-ribbon_3 PF13248.6 gi|134046007|ref|YP_001097493.1| - 0.3 10.6 5.9 0.41 10.1 0.9 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|134046007|ref|YP_001097493.1| - 6.8 6.9 12.9 2.5e+02 1.9 11.0 3.3 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 YxiJ PF14176.6 gi|134046008|ref|YP_001097494.1| - 0.0055 17.2 1.1 0.0055 17.2 1.1 2.4 3 1 0 3 3 3 1 YxiJ-like protein EF-hand_14 PF17959.1 gi|134046008|ref|YP_001097494.1| - 0.0066 16.8 0.6 0.044 14.1 0.5 2.6 1 1 1 2 2 2 1 EF-hand domain DUF5343 PF17278.2 gi|134046008|ref|YP_001097494.1| - 0.44 10.6 6.7 0.16 12.0 0.8 2.9 3 0 0 3 3 3 0 Family of unknown function (DUF5343) Fe_dep_repr_C PF02742.15 gi|134046009|ref|YP_001097495.1| - 1.2e-27 95.8 1.7 2e-27 95.1 1.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|134046009|ref|YP_001097495.1| - 1.5e-16 60.3 0.0 2.7e-16 59.5 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|134046009|ref|YP_001097495.1| - 3.3e-07 30.1 0.0 6.2e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|134046009|ref|YP_001097495.1| - 0.00017 21.4 0.0 0.00029 20.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|134046009|ref|YP_001097495.1| - 0.0033 17.3 0.0 0.0061 16.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|134046009|ref|YP_001097495.1| - 0.0086 15.6 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HrcA_DNA-bdg PF03444.15 gi|134046009|ref|YP_001097495.1| - 0.012 15.3 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|134046009|ref|YP_001097495.1| - 0.018 15.4 0.0 0.031 14.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DnaI_N PF07319.11 gi|134046009|ref|YP_001097495.1| - 0.027 15.1 0.4 0.26 12.0 0.0 2.4 3 0 0 3 3 3 0 Primosomal protein DnaI N-terminus HTH_12 PF08461.10 gi|134046009|ref|YP_001097495.1| - 0.029 14.3 0.2 1.8 8.6 0.0 2.6 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain HTH_11 PF08279.12 gi|134046009|ref|YP_001097495.1| - 0.029 14.3 0.0 0.11 12.5 0.0 2.1 2 1 0 2 2 2 0 HTH domain B-block_TFIIIC PF04182.12 gi|134046009|ref|YP_001097495.1| - 0.098 12.8 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2250 PF10007.9 gi|134046009|ref|YP_001097495.1| - 0.11 12.7 0.1 0.25 11.5 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|134046009|ref|YP_001097495.1| - 0.16 12.5 0.0 0.31 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FeoB_N PF02421.18 gi|134046010|ref|YP_001097496.1| - 1.8e-61 206.2 0.6 3e-61 205.5 0.6 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|134046010|ref|YP_001097496.1| - 1.3e-31 109.1 23.1 4.4e-22 78.5 2.8 3.0 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|134046010|ref|YP_001097496.1| - 1.7e-17 63.6 0.1 3.7e-17 62.5 0.1 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|134046010|ref|YP_001097496.1| - 3.5e-17 62.7 2.8 8.1e-17 61.6 2.8 1.7 1 0 0 1 1 1 1 FeoB cytosolic helical domain FeoB_C PF07664.12 gi|134046010|ref|YP_001097496.1| - 1.5e-14 53.4 0.4 5.5e-14 51.6 0.4 2.0 1 0 0 1 1 1 1 Ferrous iron transport protein B C terminus RsgA_GTPase PF03193.16 gi|134046010|ref|YP_001097496.1| - 2.8e-06 27.3 0.4 0.08 12.9 0.1 2.5 2 1 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|134046010|ref|YP_001097496.1| - 0.0005 19.5 0.7 0.00094 18.7 0.0 1.8 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 gi|134046010|ref|YP_001097496.1| - 0.0014 18.2 0.1 0.23 11.0 0.0 2.5 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|134046010|ref|YP_001097496.1| - 0.0097 16.0 0.0 1.2 9.2 0.1 2.5 2 0 0 2 2 2 1 Dynamin family AAA_22 PF13401.6 gi|134046010|ref|YP_001097496.1| - 0.027 14.8 0.0 0.049 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF4279 PF14106.6 gi|134046010|ref|YP_001097496.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4279) ABC_tran PF00005.27 gi|134046010|ref|YP_001097496.1| - 0.12 12.9 0.0 0.23 12.0 0.0 1.5 1 0 0 1 1 1 0 ABC transporter TrmB PF01978.19 gi|134046011|ref|YP_001097497.1| - 6.8e-06 25.9 0.1 1.2e-05 25.1 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.11 gi|134046011|ref|YP_001097497.1| - 0.00049 19.9 0.0 0.00089 19.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.6 gi|134046011|ref|YP_001097497.1| - 0.0097 15.5 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|134046011|ref|YP_001097497.1| - 0.045 13.6 0.1 0.058 13.3 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Fe_dep_repress PF01325.19 gi|134046011|ref|YP_001097497.1| - 0.055 13.7 0.0 0.19 12.0 0.0 1.9 1 1 1 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_40 PF14493.6 gi|134046011|ref|YP_001097497.1| - 0.091 13.2 0.1 0.25 11.8 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain TOBE PF03459.17 gi|134046012|ref|YP_001097498.1| - 2e-19 69.6 0.5 2.2e-19 69.5 0.5 1.0 1 0 0 1 1 1 1 TOBE domain Ribosomal_L34e PF01199.18 gi|134046013|ref|YP_001097499.1| - 1.8e-25 89.1 5.0 1.9e-25 89.0 5.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DZR PF12773.7 gi|134046013|ref|YP_001097499.1| - 0.0028 17.6 0.2 0.0037 17.3 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon Fer2_3 PF13085.6 gi|134046013|ref|YP_001097499.1| - 0.022 14.8 0.1 0.023 14.7 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DUF4428 PF14471.6 gi|134046013|ref|YP_001097499.1| - 0.057 13.3 0.2 0.98 9.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Cytidylate_kin2 PF13189.6 gi|134046014|ref|YP_001097500.1| - 2.1e-20 73.6 0.2 2.1e-18 67.1 0.2 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|134046014|ref|YP_001097500.1| - 1.2e-14 55.0 0.1 1.6e-14 54.5 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|134046014|ref|YP_001097500.1| - 1.4e-12 48.2 0.0 2.9e-12 47.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|134046014|ref|YP_001097500.1| - 2.7e-08 33.8 0.9 5.7e-05 22.9 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|134046014|ref|YP_001097500.1| - 2.4e-05 24.5 0.2 0.00013 22.1 0.2 2.0 1 1 0 1 1 1 1 Adenylate kinase Thymidylate_kin PF02223.17 gi|134046014|ref|YP_001097500.1| - 0.0093 15.7 0.1 0.22 11.2 0.0 2.1 2 0 0 2 2 2 1 Thymidylate kinase SKI PF01202.22 gi|134046014|ref|YP_001097500.1| - 0.048 13.8 1.1 0.11 12.6 1.1 1.6 1 1 0 1 1 1 0 Shikimate kinase PRK PF00485.18 gi|134046014|ref|YP_001097500.1| - 0.061 13.1 0.3 0.16 11.7 0.1 1.7 1 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.6 gi|134046014|ref|YP_001097500.1| - 0.075 13.3 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|134046014|ref|YP_001097500.1| - 0.13 12.0 3.9 2.3 8.1 0.7 2.4 1 1 1 2 2 2 0 Deoxynucleoside kinase KOW PF00467.29 gi|134046015|ref|YP_001097501.1| - 0.00032 20.5 1.3 0.00036 20.4 0.4 1.6 2 0 0 2 2 2 1 KOW motif Ribosomal_L14e PF01929.17 gi|134046015|ref|YP_001097501.1| - 0.002 18.6 0.0 0.003 18.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 Putative_PNPOx PF01243.20 gi|134046016|ref|YP_001097502.1| - 5e-14 52.2 0.0 6.5e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.12 gi|134046016|ref|YP_001097502.1| - 0.0005 19.9 0.0 0.00059 19.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF447) AIM24 PF01987.17 gi|134046017|ref|YP_001097503.1| - 4.7e-55 186.5 1.6 5.2e-55 186.4 1.6 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 MltA PF03562.17 gi|134046017|ref|YP_001097503.1| - 0.022 14.5 0.1 0.26 11.0 0.0 2.0 2 0 0 2 2 2 0 MltA specific insert domain TSP_C PF05735.12 gi|134046017|ref|YP_001097503.1| - 0.075 12.9 0.1 1.1 9.1 0.0 2.4 2 0 0 2 2 2 0 Thrombospondin C-terminal region ADP_ribosyl_GH PF03747.14 gi|134046018|ref|YP_001097504.1| - 2.5e-61 207.9 0.0 3.1e-61 207.6 0.0 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase SurE PF01975.17 gi|134046018|ref|YP_001097504.1| - 0.013 15.3 0.4 0.076 12.8 0.1 1.8 1 1 1 2 2 2 0 Survival protein SurE Cas_Cas02710 PF09670.10 gi|134046018|ref|YP_001097504.1| - 0.05 12.4 0.0 0.073 11.9 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) T3SS_ExsE PF18286.1 gi|134046018|ref|YP_001097504.1| - 0.15 12.0 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Type III secretion system ExsE AP_endonuc_2 PF01261.24 gi|134046019|ref|YP_001097505.1| - 1.3e-15 57.4 0.0 1.8e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel ABC_tran PF00005.27 gi|134046020|ref|YP_001097506.1| - 1.4e-52 177.9 0.0 2.9e-25 89.4 0.0 2.4 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|134046020|ref|YP_001097506.1| - 3.3e-07 30.0 1.9 0.028 13.8 0.1 3.5 2 2 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|134046020|ref|YP_001097506.1| - 4.5e-06 26.3 0.3 0.099 12.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|134046020|ref|YP_001097506.1| - 4.8e-06 26.6 0.2 0.11 12.3 0.0 4.0 3 1 1 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system NB-ARC PF00931.22 gi|134046020|ref|YP_001097506.1| - 2.6e-05 23.6 0.2 0.062 12.5 0.0 2.9 2 1 0 2 2 2 2 NB-ARC domain RsgA_GTPase PF03193.16 gi|134046020|ref|YP_001097506.1| - 4.4e-05 23.4 4.1 0.11 12.3 0.1 2.9 3 0 0 3 3 3 2 RsgA GTPase AAA_18 PF13238.6 gi|134046020|ref|YP_001097506.1| - 0.0002 21.9 0.1 1.2 9.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|134046020|ref|YP_001097506.1| - 0.0016 18.8 0.1 1.9 8.8 0.0 2.7 3 0 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|134046020|ref|YP_001097506.1| - 0.0037 17.5 0.2 2.3 8.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|134046020|ref|YP_001097506.1| - 0.0042 16.8 0.1 1.1 8.9 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_23 PF13476.6 gi|134046020|ref|YP_001097506.1| - 0.0047 17.4 0.0 1.5 9.2 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|134046020|ref|YP_001097506.1| - 0.0083 16.3 0.3 0.83 9.8 0.1 2.8 2 0 0 2 2 2 1 AAA domain PRK PF00485.18 gi|134046020|ref|YP_001097506.1| - 0.014 15.2 0.0 7.4 6.3 0.0 2.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family IstB_IS21 PF01695.17 gi|134046020|ref|YP_001097506.1| - 0.023 14.4 0.0 3.9 7.2 0.0 3.2 3 0 0 3 3 3 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|134046020|ref|YP_001097506.1| - 0.025 14.7 0.4 8.8 6.5 0.0 3.3 3 0 0 3 3 3 0 50S ribosome-binding GTPase MobB PF03205.14 gi|134046020|ref|YP_001097506.1| - 0.029 14.3 0.5 2.5 8.0 0.1 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 gi|134046020|ref|YP_001097506.1| - 0.03 14.2 0.9 6 6.8 0.1 2.8 3 0 0 3 3 3 0 NACHT domain dNK PF01712.19 gi|134046020|ref|YP_001097506.1| - 0.036 13.9 0.0 8.7 6.1 0.0 3.2 2 1 0 2 2 2 0 Deoxynucleoside kinase SbcCD_C PF13558.6 gi|134046020|ref|YP_001097506.1| - 0.039 14.2 0.0 4.4 7.6 0.0 3.0 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.12 gi|134046020|ref|YP_001097506.1| - 0.048 12.9 1.4 6.8 5.9 0.0 3.1 2 1 0 2 2 2 0 Zeta toxin Mg_chelatase PF01078.21 gi|134046020|ref|YP_001097506.1| - 0.098 12.0 0.0 1.2 8.4 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.9 gi|134046020|ref|YP_001097506.1| - 0.11 12.3 0.1 11 5.8 0.0 3.1 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Terminase_2 PF03592.16 gi|134046020|ref|YP_001097506.1| - 0.38 11.2 2.4 5.3 7.5 2.4 2.3 1 1 0 1 1 1 0 Terminase small subunit DUF87 PF01935.17 gi|134046020|ref|YP_001097506.1| - 0.42 10.7 4.6 6.1 6.9 0.1 2.8 2 1 0 2 2 2 0 Helicase HerA, central domain AAA_28 PF13521.6 gi|134046020|ref|YP_001097506.1| - 0.57 10.4 1.8 26 5.0 0.0 3.8 4 1 1 5 5 4 0 AAA domain TsaE PF02367.17 gi|134046020|ref|YP_001097506.1| - 0.63 10.1 2.8 2.3 8.2 0.0 3.0 4 1 0 4 4 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|134046020|ref|YP_001097506.1| - 0.95 9.0 5.1 14 5.2 0.1 3.7 4 0 0 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|134046020|ref|YP_001097506.1| - 1.6 8.4 5.5 12 5.6 0.4 3.2 2 1 1 3 3 3 0 AAA domain VP9 PF09625.10 gi|134046020|ref|YP_001097506.1| - 3.2 8.0 5.1 2.2 8.5 2.2 2.1 2 0 0 2 2 2 0 VP9 protein DUF134 PF02001.16 gi|134046021|ref|YP_001097507.1| - 2.3e-31 108.2 0.0 3.3e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF134 HTH_29 PF13551.6 gi|134046021|ref|YP_001097507.1| - 0.0024 17.8 0.1 0.0079 16.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|134046021|ref|YP_001097507.1| - 0.0037 17.0 0.0 0.006 16.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|134046021|ref|YP_001097507.1| - 0.012 15.1 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.12 gi|134046021|ref|YP_001097507.1| - 0.021 14.6 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|134046021|ref|YP_001097507.1| - 0.025 14.3 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 Nit_Regul_Hom PF10126.9 gi|134046022|ref|YP_001097508.1| - 3.4e-46 155.7 0.2 3.8e-46 155.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII Rad51 PF08423.11 gi|134046023|ref|YP_001097509.1| - 2.5e-22 79.4 0.2 2.9e-22 79.2 0.2 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|134046023|ref|YP_001097509.1| - 1.3e-12 47.7 0.3 1.7e-12 47.4 0.3 1.0 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|134046023|ref|YP_001097509.1| - 9e-11 41.6 2.7 1.4e-10 40.9 2.7 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|134046023|ref|YP_001097509.1| - 8.5e-06 25.5 0.0 1.6e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|134046023|ref|YP_001097509.1| - 1e-05 25.3 0.0 1.6e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|134046023|ref|YP_001097509.1| - 2.7e-05 24.2 1.1 3.1e-05 24.0 1.1 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|134046023|ref|YP_001097509.1| - 0.00018 21.3 0.0 0.00031 20.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Zot PF05707.12 gi|134046023|ref|YP_001097509.1| - 0.00079 19.1 0.0 0.00091 18.9 0.0 1.2 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA PF00004.29 gi|134046023|ref|YP_001097509.1| - 0.0017 18.8 0.2 0.003 18.0 0.2 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|134046023|ref|YP_001097509.1| - 0.0032 17.5 0.0 0.0038 17.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.6 gi|134046023|ref|YP_001097509.1| - 0.0034 17.9 0.1 0.012 16.1 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|134046023|ref|YP_001097509.1| - 0.0087 16.3 0.4 0.046 14.0 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|134046023|ref|YP_001097509.1| - 0.012 15.4 0.3 0.016 15.0 0.3 1.6 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|134046023|ref|YP_001097509.1| - 0.037 13.5 0.0 0.13 11.6 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein AAA_31 PF13614.6 gi|134046023|ref|YP_001097509.1| - 0.053 13.4 0.6 0.069 13.1 0.6 1.4 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|134046023|ref|YP_001097509.1| - 0.057 13.9 0.8 0.082 13.4 0.5 1.4 1 1 0 1 1 1 0 ABC transporter AAA_5 PF07728.14 gi|134046023|ref|YP_001097509.1| - 0.083 12.9 0.0 0.13 12.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|134046023|ref|YP_001097509.1| - 0.1 13.0 0.0 0.12 12.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain DEAD PF00270.29 gi|134046023|ref|YP_001097509.1| - 0.12 12.1 0.0 0.24 11.2 0.0 1.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase DUF1743 PF08489.11 gi|134046024|ref|YP_001097510.1| - 1.5e-35 121.7 0.0 3.4e-35 120.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|134046024|ref|YP_001097510.1| - 6e-06 26.2 0.6 1.9e-05 24.6 0.1 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|134046024|ref|YP_001097510.1| - 0.1 12.3 0.1 0.47 10.1 0.0 1.9 1 1 0 2 2 2 0 Cell division control protein 24, OB domain 3 TruD PF01142.18 gi|134046025|ref|YP_001097511.1| - 1.6e-112 376.4 4.6 1.4e-90 304.1 0.9 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) FMN_red PF03358.15 gi|134046026|ref|YP_001097512.1| - 7.2e-28 97.3 0.0 8.8e-28 97.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|134046026|ref|YP_001097512.1| - 1.1e-08 35.0 0.0 1.4e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold AAL_decarboxy PF03306.13 gi|134046027|ref|YP_001097513.1| - 5e-85 284.3 0.1 5.8e-85 284.1 0.1 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase zinc-ribbons_6 PF07191.12 gi|134046028|ref|YP_001097514.1| - 6.2e-05 22.9 0.5 6.8e-05 22.8 0.5 1.1 1 0 0 1 1 1 1 zinc-ribbons Trm112p PF03966.16 gi|134046028|ref|YP_001097514.1| - 0.00015 22.2 3.1 0.00084 19.9 3.1 1.8 1 1 0 1 1 1 1 Trm112p-like protein zinc_ribbon_4 PF13717.6 gi|134046028|ref|YP_001097514.1| - 0.0004 20.2 1.9 0.036 14.0 0.4 2.1 2 0 0 2 2 2 1 zinc-ribbon domain FYVE PF01363.21 gi|134046028|ref|YP_001097514.1| - 0.0043 17.1 0.1 0.005 16.9 0.1 1.1 1 0 0 1 1 1 1 FYVE zinc finger DnaJ_CXXCXGXG PF00684.19 gi|134046028|ref|YP_001097514.1| - 0.0047 17.3 0.8 0.0058 17.0 0.8 1.1 1 0 0 1 1 1 1 DnaJ central domain zf-DNL PF05180.12 gi|134046028|ref|YP_001097514.1| - 0.0053 16.7 1.0 0.11 12.4 0.2 2.0 2 0 0 2 2 2 1 DNL zinc finger DiS_P_DiS PF06750.13 gi|134046028|ref|YP_001097514.1| - 0.014 15.5 1.4 0.16 12.1 1.4 2.0 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain A2L_zn_ribbon PF08792.10 gi|134046028|ref|YP_001097514.1| - 0.041 13.6 6.1 0.57 10.0 2.1 2.1 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-H2C2_2 PF13465.6 gi|134046028|ref|YP_001097514.1| - 0.068 13.6 3.2 3.2 8.3 0.4 2.1 2 0 0 2 2 2 0 Zinc-finger double domain HypA PF01155.19 gi|134046028|ref|YP_001097514.1| - 0.069 13.2 0.3 0.079 13.0 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|134046028|ref|YP_001097514.1| - 0.096 12.3 1.4 3.1 7.5 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF2614 PF11023.8 gi|134046028|ref|YP_001097514.1| - 0.097 12.8 0.5 0.1 12.7 0.5 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain PADR1 PF08063.12 gi|134046028|ref|YP_001097514.1| - 0.1 12.4 5.6 0.74 9.7 2.7 2.0 1 1 1 2 2 2 0 PADR1 (NUC008) domain Cys_rich_KTR PF14205.6 gi|134046028|ref|YP_001097514.1| - 0.13 12.0 8.9 0.46 10.3 1.3 2.1 1 1 1 2 2 2 0 Cysteine-rich KTR Anti-TRAP PF15777.5 gi|134046028|ref|YP_001097514.1| - 0.62 10.1 5.7 0.29 11.1 0.8 2.0 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF3565 PF12088.8 gi|134046028|ref|YP_001097514.1| - 0.63 10.0 4.1 0.48 10.4 0.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3565) Zn-ribbon_8 PF09723.10 gi|134046028|ref|YP_001097514.1| - 0.74 10.0 4.4 3.3 7.9 0.3 2.0 1 1 0 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.18 gi|134046028|ref|YP_001097514.1| - 1.1 9.1 4.4 11 6.0 0.3 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) LigT_PEase PF02834.16 gi|134046029|ref|YP_001097515.1| - 2.3e-32 111.0 0.0 3.2e-16 59.3 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|134046029|ref|YP_001097515.1| - 3.9e-10 40.0 3.3 1.3e-09 38.2 3.3 1.7 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.6 gi|134046029|ref|YP_001097515.1| - 2.8e-07 30.6 0.0 3.5e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily CPDase PF07823.11 gi|134046029|ref|YP_001097515.1| - 0.029 14.1 0.0 0.058 13.1 0.0 1.5 2 0 0 2 2 2 0 Cyclic phosphodiesterase-like protein SPASM PF13186.6 gi|134046029|ref|YP_001097515.1| - 0.15 12.6 0.1 0.67 10.5 0.0 2.2 1 1 1 2 2 2 0 Iron-sulfur cluster-binding domain DUF4065 PF13274.6 gi|134046029|ref|YP_001097515.1| - 0.5 11.3 5.7 0.17 12.8 0.7 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF4065) HMA PF00403.26 gi|134046029|ref|YP_001097515.1| - 1.2 9.6 11.4 6 7.4 0.5 3.9 3 1 1 4 4 4 0 Heavy-metal-associated domain Lactamase_B PF00753.27 gi|134046030|ref|YP_001097516.1| - 1.5e-11 44.6 0.0 2.9e-10 40.5 0.0 2.1 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|134046030|ref|YP_001097516.1| - 0.0043 16.9 0.2 0.0052 16.7 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|134046030|ref|YP_001097516.1| - 0.017 14.6 0.5 0.19 11.2 0.4 2.2 1 1 1 2 2 2 0 Metallo-beta-lactamase superfamily domain TGT PF01702.18 gi|134046031|ref|YP_001097517.1| - 4e-83 279.5 0.0 5.4e-83 279.0 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.6 gi|134046031|ref|YP_001097517.1| - 6.9e-18 64.6 0.0 2.4e-17 62.8 0.0 1.9 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|134046031|ref|YP_001097517.1| - 1.6e-10 40.8 0.0 4.1e-10 39.5 0.0 1.8 1 0 0 1 1 1 1 PUA domain DUF5591 PF17884.1 gi|134046031|ref|YP_001097517.1| - 5.1e-05 23.2 0.1 0.00013 21.9 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C1 PF14809.6 gi|134046031|ref|YP_001097517.1| - 0.00036 20.8 0.0 0.4 11.0 0.0 2.8 2 1 0 3 3 3 2 C1 domain of tRNA-guanine transglycosylase dimerisation PTH2 PF01981.16 gi|134046032|ref|YP_001097518.1| - 7.1e-42 142.4 0.1 7.8e-42 142.3 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 BcrAD_BadFG PF01869.20 gi|134046033|ref|YP_001097519.1| - 1.3e-61 208.5 6.5 1.7e-61 208.1 6.5 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|134046033|ref|YP_001097519.1| - 0.002 18.5 0.2 0.021 15.2 0.2 2.4 1 1 0 1 1 1 1 Cell division protein FtsA FGGY_C PF02782.16 gi|134046033|ref|YP_001097519.1| - 0.017 14.8 0.8 0.066 12.9 0.1 2.2 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain Hydant_A_N PF05378.13 gi|134046033|ref|YP_001097519.1| - 0.032 13.9 0.6 0.032 13.9 0.6 2.1 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region NRD1_2 PF01995.16 gi|134046034|ref|YP_001097520.1| - 3.7e-130 432.3 6.4 6.7e-66 222.0 0.9 2.2 2 0 0 2 2 2 2 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|134046034|ref|YP_001097520.1| - 1.8e-30 104.7 1.4 3.2e-30 103.9 0.7 1.9 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain RuvB_C PF05491.13 gi|134046034|ref|YP_001097520.1| - 0.08 12.8 0.4 0.57 10.1 0.1 2.6 2 1 0 2 2 2 0 RuvB C-terminal winged helix domain FtsJ PF01728.19 gi|134046035|ref|YP_001097521.1| - 3.1e-52 177.3 0.0 3.9e-52 176.9 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|134046035|ref|YP_001097521.1| - 2.7e-07 30.5 0.1 3e-06 27.1 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|134046035|ref|YP_001097521.1| - 0.00015 21.6 0.0 0.00046 20.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|134046035|ref|YP_001097521.1| - 0.023 15.4 0.4 0.12 13.1 0.3 2.3 1 1 1 2 2 2 0 Methyltransferase domain TrkA_N PF02254.18 gi|134046035|ref|YP_001097521.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain KH_1 PF00013.29 gi|134046036|ref|YP_001097522.1| - 3e-12 46.2 4.1 8e-06 25.6 1.2 2.3 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|134046036|ref|YP_001097522.1| - 8.8e-07 28.9 0.0 3e-06 27.2 0.0 1.8 2 0 0 2 2 2 1 Krr1 KH1 domain KH_2 PF07650.17 gi|134046036|ref|YP_001097522.1| - 0.00042 20.1 4.2 0.006 16.4 0.3 2.3 2 0 0 2 2 2 2 KH domain Peptidase_M16_C PF05193.21 gi|134046036|ref|YP_001097522.1| - 0.058 13.4 0.0 0.083 12.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase M16 inactive domain KH_4 PF13083.6 gi|134046036|ref|YP_001097522.1| - 0.13 12.1 3.2 1.5 8.8 0.1 2.8 2 1 0 2 2 2 0 KH domain RIO1 PF01163.22 gi|134046037|ref|YP_001097523.1| - 1.8e-57 194.0 0.4 1.8e-57 194.0 0.4 1.6 2 0 0 2 2 2 1 RIO1 family APH PF01636.23 gi|134046037|ref|YP_001097523.1| - 0.00036 20.5 0.0 0.00092 19.2 0.0 1.6 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|134046037|ref|YP_001097523.1| - 0.019 13.7 0.0 0.032 13.0 0.0 1.3 1 0 0 1 1 1 0 Fungal protein kinase Ins_P5_2-kin PF06090.12 gi|134046037|ref|YP_001097523.1| - 0.065 12.7 0.0 0.091 12.2 0.0 1.2 1 0 0 1 1 1 0 Inositol-pentakisphosphate 2-kinase eIF-1a PF01176.19 gi|134046038|ref|YP_001097524.1| - 7.1e-20 70.6 1.8 9.6e-20 70.2 1.8 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 OMPdecase PF00215.24 gi|134046039|ref|YP_001097525.1| - 3.6e-38 131.4 1.3 4.2e-38 131.2 1.3 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Class_IIIsignal PF04021.12 gi|134046040|ref|YP_001097526.1| - 0.0003 20.7 0.9 0.00046 20.1 0.9 1.3 1 0 0 1 1 1 1 Class III signal peptide DUF4251 PF14059.6 gi|134046040|ref|YP_001097526.1| - 0.0012 18.8 0.9 0.0021 18.0 0.9 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4251) DUF2835 PF11197.8 gi|134046040|ref|YP_001097526.1| - 0.18 11.7 0.0 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2835) Class_IIIsignal PF04021.12 gi|134046041|ref|YP_001097527.1| - 6.7e-08 32.3 2.9 1.3e-07 31.4 2.9 1.5 1 0 0 1 1 1 1 Class III signal peptide CbiJ PF02571.14 gi|134046042|ref|YP_001097528.1| - 3.6e-59 200.1 0.0 4e-59 200.0 0.0 1.0 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK PhosphMutase PF10143.9 gi|134046043|ref|YP_001097529.1| - 6e-30 104.3 0.0 9.2e-30 103.8 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|134046043|ref|YP_001097529.1| - 0.00076 18.9 0.0 0.0015 18.0 0.0 1.5 1 1 0 1 1 1 1 Metalloenzyme superfamily Fibrillarin PF01269.17 gi|134046044|ref|YP_001097530.1| - 5.7e-99 329.8 0.2 6.4e-99 329.7 0.2 1.0 1 0 0 1 1 1 1 Fibrillarin Nop PF01798.18 gi|134046045|ref|YP_001097531.1| - 3e-65 219.9 0.0 4.6e-65 219.3 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin DUF445 PF04286.12 gi|134046045|ref|YP_001097531.1| - 0.049 13.4 2.7 1.4 8.7 0.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF445) CorA PF01544.18 gi|134046045|ref|YP_001097531.1| - 0.14 11.4 1.0 1.4 8.2 0.1 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein SepSecS PF05889.13 gi|134046046|ref|YP_001097532.1| - 1.5e-144 481.5 0.0 1.8e-144 481.3 0.0 1.0 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Beta_elim_lyase PF01212.21 gi|134046046|ref|YP_001097532.1| - 6.5e-05 22.4 0.0 8.2e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.19 gi|134046046|ref|YP_001097532.1| - 0.034 12.9 0.0 0.052 12.3 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain CbiA PF01656.23 gi|134046048|ref|YP_001097534.1| - 5.4e-27 94.4 0.4 8.9e-27 93.7 0.4 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|134046048|ref|YP_001097534.1| - 8.5e-25 87.6 4.1 5.8e-24 84.9 4.1 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|134046048|ref|YP_001097534.1| - 1.8e-20 73.6 0.6 2.7e-20 73.0 0.6 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|134046048|ref|YP_001097534.1| - 1.5e-13 50.8 3.0 2.3e-06 27.3 0.5 2.0 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|134046048|ref|YP_001097534.1| - 5.2e-11 42.5 0.0 6.7e-11 42.1 0.0 1.3 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|134046048|ref|YP_001097534.1| - 1.7e-09 37.3 0.5 1.4e-08 34.3 0.5 2.0 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|134046048|ref|YP_001097534.1| - 6.9e-08 32.0 3.6 1.8e-06 27.3 0.3 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase AAA_26 PF13500.6 gi|134046048|ref|YP_001097534.1| - 1.8e-06 27.9 7.9 7.2e-06 26.0 1.2 2.4 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|134046048|ref|YP_001097534.1| - 0.00032 20.4 3.0 0.00061 19.5 0.5 2.4 2 1 1 3 3 3 1 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|134046048|ref|YP_001097534.1| - 0.0013 18.5 0.3 0.015 15.1 0.0 2.0 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 gi|134046048|ref|YP_001097534.1| - 0.0049 16.2 0.8 0.0094 15.3 0.8 1.5 1 0 0 1 1 1 1 VirC1 protein AAA_30 PF13604.6 gi|134046048|ref|YP_001097534.1| - 0.012 15.3 1.0 0.021 14.5 1.0 1.6 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|134046048|ref|YP_001097534.1| - 0.014 15.2 0.2 0.053 13.3 0.2 1.8 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein PhoH PF02562.16 gi|134046048|ref|YP_001097534.1| - 0.021 14.3 0.6 2 7.8 0.9 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA PF00004.29 gi|134046048|ref|YP_001097534.1| - 0.037 14.5 0.2 0.099 13.1 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 gi|134046048|ref|YP_001097534.1| - 0.057 13.4 0.0 2.3 8.2 0.1 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|134046048|ref|YP_001097534.1| - 0.076 12.6 0.6 0.17 11.4 0.3 1.7 2 0 0 2 2 2 0 AAA domain DUF853 PF05872.12 gi|134046048|ref|YP_001097534.1| - 0.1 11.2 0.7 0.16 10.5 0.7 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) AAA_24 PF13479.6 gi|134046048|ref|YP_001097534.1| - 0.11 12.2 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain Ninjurin PF04923.12 gi|134046049|ref|YP_001097535.1| - 0.032 14.2 0.2 0.035 14.1 0.2 1.1 1 0 0 1 1 1 0 Ninjurin DUF1542 PF07564.11 gi|134046049|ref|YP_001097535.1| - 0.037 14.1 0.1 0.041 14.0 0.1 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1542) UL45 PF05473.12 gi|134046050|ref|YP_001097536.1| - 0.16 11.6 0.0 0.24 11.0 0.0 1.1 1 0 0 1 1 1 0 UL45 protein, carbohydrate-binding C-type lectin-like Glycos_transf_2 PF00535.26 gi|134046051|ref|YP_001097537.1| - 1.2e-24 87.0 0.2 1.7e-24 86.5 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|134046051|ref|YP_001097537.1| - 1.6e-05 24.5 0.3 2.8e-05 23.7 0.3 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|134046051|ref|YP_001097537.1| - 2e-05 24.6 0.0 2.6e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|134046051|ref|YP_001097537.1| - 0.037 14.6 0.1 0.11 13.0 0.1 1.9 1 1 0 1 1 1 0 Glycosyl transferase family 2 CAP59_mtransfer PF11735.8 gi|134046051|ref|YP_001097537.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 Radical_SAM PF04055.21 gi|134046052|ref|YP_001097538.1| - 4.5e-13 49.9 0.1 2.2e-12 47.7 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.20 gi|134046052|ref|YP_001097538.1| - 0.03 14.3 0.5 0.069 13.1 0.5 1.6 1 0 0 1 1 1 0 TRAM domain TRAM_2 PF18693.1 gi|134046052|ref|YP_001097538.1| - 0.15 12.2 0.2 0.69 10.1 0.2 2.1 1 1 0 1 1 1 0 TRAM domain TP_methylase PF00590.20 gi|134046054|ref|YP_001097540.1| - 3.9e-19 69.5 0.1 4.6e-19 69.2 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases sCache_like PF16736.5 gi|134046054|ref|YP_001097540.1| - 0.01 15.9 0.1 0.027 14.5 0.0 1.7 2 0 0 2 2 2 0 Single Cache-like Rimk_N PF18030.1 gi|134046054|ref|YP_001097540.1| - 0.021 15.2 0.0 11 6.5 0.0 3.0 2 2 1 3 3 3 0 RimK PreATP-grasp domain MuF_C PF18819.1 gi|134046054|ref|YP_001097540.1| - 0.031 14.3 0.1 0.12 12.4 0.1 1.9 2 0 0 2 2 2 0 Phage MuF-C-terminal domain Na_H_Exchanger PF00999.21 gi|134046055|ref|YP_001097541.1| - 4.7e-68 229.7 46.2 5.5e-68 229.5 46.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family HhH-GPD PF00730.25 gi|134046056|ref|YP_001097542.1| - 5e-17 62.3 0.0 7.1e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|134046056|ref|YP_001097542.1| - 1.9e-05 24.3 0.0 5e-05 23.0 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif RanGAP1_C PF07834.11 gi|134046056|ref|YP_001097542.1| - 0.0022 17.7 0.0 0.0033 17.1 0.0 1.3 1 0 0 1 1 1 1 RanGAP1 C-terminal domain HHH_5 PF14520.6 gi|134046056|ref|YP_001097542.1| - 0.0056 17.3 0.1 0.035 14.7 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|134046056|ref|YP_001097542.1| - 0.083 13.0 0.0 0.54 10.4 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif Usp PF00582.26 gi|134046057|ref|YP_001097543.1| - 9.8e-37 126.6 0.3 1.1e-36 126.4 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|134046057|ref|YP_001097543.1| - 0.044 13.2 0.1 0.08 12.4 0.1 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel ETF PF01012.21 gi|134046057|ref|YP_001097543.1| - 0.075 12.9 0.1 6.2 6.7 0.0 2.1 2 0 0 2 2 2 0 Electron transfer flavoprotein domain tRNA-synt_1 PF00133.22 gi|134046058|ref|YP_001097544.1| - 6.7e-149 496.9 3.1 1e-147 493.0 3.1 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|134046058|ref|YP_001097544.1| - 2.9e-30 105.2 1.5 6.8e-30 104.0 1.5 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|134046058|ref|YP_001097544.1| - 1.9e-26 92.8 0.1 4e-15 55.5 0.0 3.5 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|134046058|ref|YP_001097544.1| - 2.8e-05 23.6 0.0 0.22 10.9 0.0 2.8 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|134046058|ref|YP_001097544.1| - 0.00019 21.0 0.0 0.0011 18.6 0.0 2.2 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 VWD PF00094.25 gi|134046058|ref|YP_001097544.1| - 0.0045 17.3 0.0 0.015 15.5 0.0 1.9 1 0 0 1 1 1 1 von Willebrand factor type D domain AzlD PF05437.12 gi|134046059|ref|YP_001097545.1| - 4e-20 71.8 10.0 4.6e-20 71.6 10.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) Sid-5 PF17204.3 gi|134046059|ref|YP_001097545.1| - 0.055 13.6 0.2 0.055 13.6 0.2 1.7 1 1 0 2 2 2 0 Sid-5 family ATP-synt_Eps PF04627.13 gi|134046059|ref|YP_001097545.1| - 0.13 12.3 0.3 0.24 11.4 0.3 1.5 1 0 0 1 1 1 0 Mitochondrial ATP synthase epsilon chain AzlC PF03591.14 gi|134046060|ref|YP_001097546.1| - 9.6e-43 145.9 3.4 9.6e-43 145.9 3.4 1.9 2 1 0 2 2 2 1 AzlC protein Lactamase_B_2 PF12706.7 gi|134046061|ref|YP_001097547.1| - 1.9e-07 30.8 0.0 2.7e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|134046061|ref|YP_001097547.1| - 1.8e-06 28.1 0.0 2.6e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|134046061|ref|YP_001097547.1| - 0.00068 19.1 0.0 0.0015 18.0 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|134046061|ref|YP_001097547.1| - 0.041 13.8 0.0 0.076 12.9 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Radical_SAM PF04055.21 gi|134046062|ref|YP_001097548.1| - 4e-25 89.1 0.3 7e-25 88.3 0.2 1.5 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|134046062|ref|YP_001097548.1| - 9.6e-13 48.6 0.2 2.3e-12 47.4 0.1 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|134046062|ref|YP_001097548.1| - 1.3e-09 38.3 0.8 5e-09 36.3 0.0 2.2 2 1 0 2 2 2 1 4Fe-4S single cluster domain ComA PF02679.15 gi|134046062|ref|YP_001097548.1| - 0.043 13.3 0.1 3.2 7.2 0.0 2.1 1 1 1 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) MAF_flag10 PF01973.18 gi|134046063|ref|YP_001097549.1| - 1.8e-42 144.9 1.3 2.4e-42 144.5 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|134046063|ref|YP_001097549.1| - 0.0015 18.6 0.3 0.0029 17.7 0.3 1.6 1 1 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain Phage_antitermQ PF06530.12 gi|134046063|ref|YP_001097549.1| - 0.029 14.3 0.0 0.13 12.1 0.0 2.0 2 1 0 2 2 2 0 Phage antitermination protein Q CM_2 PF01817.21 gi|134046064|ref|YP_001097550.1| - 1.3e-16 60.7 0.9 1.5e-16 60.5 0.9 1.1 1 0 0 1 1 1 1 Chorismate mutase type II HOOK PF05622.12 gi|134046064|ref|YP_001097550.1| - 0.0037 15.5 0.6 0.0042 15.3 0.6 1.3 1 1 0 1 1 1 1 HOOK protein STAT_alpha PF01017.20 gi|134046064|ref|YP_001097550.1| - 0.018 14.9 0.7 0.02 14.8 0.7 1.1 1 0 0 1 1 1 0 STAT protein, all-alpha domain Ribosomal_S17e PF00833.18 gi|134046065|ref|YP_001097551.1| - 7.8e-19 67.8 1.5 8.3e-19 67.7 1.5 1.0 1 0 0 1 1 1 1 Ribosomal S17 Annexin PF00191.20 gi|134046065|ref|YP_001097551.1| - 0.032 14.3 0.1 0.051 13.7 0.1 1.4 1 1 0 1 1 1 0 Annexin PocR PF10114.9 gi|134046065|ref|YP_001097551.1| - 0.037 13.8 0.1 0.04 13.7 0.1 1.0 1 0 0 1 1 1 0 Sensory domain found in PocR DUF4019 PF13211.6 gi|134046065|ref|YP_001097551.1| - 0.047 14.1 0.1 0.059 13.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) DHDPS PF00701.22 gi|134046066|ref|YP_001097552.1| - 1.6e-93 312.6 0.1 1.7e-93 312.5 0.1 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Glu-tRNAGln PF02686.15 gi|134046067|ref|YP_001097553.1| - 1.5e-06 28.4 1.9 1.8e-06 28.1 1.9 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Choline_kin_N PF04428.14 gi|134046067|ref|YP_001097553.1| - 0.048 13.3 0.0 0.13 12.0 0.0 1.8 1 1 0 1 1 1 0 Choline kinase N terminus Lipase_GDSL_3 PF14606.6 gi|134046067|ref|YP_001097553.1| - 0.17 12.0 0.3 0.19 11.9 0.3 1.1 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family NTP_transf_3 PF12804.7 gi|134046069|ref|YP_001097555.1| - 1.1e-24 87.6 0.0 1.2e-24 87.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain FKBP26_C PF18046.1 gi|134046070|ref|YP_001097556.1| - 7e-19 67.7 0.4 1.7e-18 66.5 0.4 1.7 1 0 0 1 1 1 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|134046070|ref|YP_001097556.1| - 1.3e-11 44.7 0.4 7.2e-11 42.3 0.2 2.1 2 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF3553 PF12073.8 gi|134046070|ref|YP_001097556.1| - 0.094 12.5 0.1 0.37 10.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3553) Radical_SAM PF04055.21 gi|134046071|ref|YP_001097557.1| - 3e-31 109.0 0.0 5.2e-31 108.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|134046071|ref|YP_001097557.1| - 8e-19 67.8 0.2 1.5e-18 67.0 0.2 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|134046071|ref|YP_001097557.1| - 5.4e-11 42.9 0.1 9.3e-11 42.2 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|134046071|ref|YP_001097557.1| - 1.2e-09 38.3 0.1 2.6e-09 37.2 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain S_layer_N PF05123.12 gi|134046072|ref|YP_001097558.1| - 1.3e-78 264.8 10.9 1.3e-78 264.8 10.9 2.2 2 0 0 2 2 2 1 S-layer like family, N-terminal region S_layer_C PF05124.12 gi|134046072|ref|YP_001097558.1| - 4.9e-60 203.3 11.4 4.9e-60 203.3 11.4 2.2 2 0 0 2 2 2 1 S-layer like family, C-terminal region Cupin_2 PF07883.11 gi|134046073|ref|YP_001097559.1| - 1e-13 50.8 0.0 1.4e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Cupin domain HTH_3 PF01381.22 gi|134046073|ref|YP_001097559.1| - 1.8e-11 43.9 0.1 2.7e-11 43.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|134046073|ref|YP_001097559.1| - 3.8e-08 33.5 0.0 5.5e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|134046073|ref|YP_001097559.1| - 3.6e-05 23.5 0.1 8.6e-05 22.3 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|134046073|ref|YP_001097559.1| - 6.1e-05 23.0 0.0 0.00015 21.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|134046073|ref|YP_001097559.1| - 0.00017 21.9 0.0 0.00025 21.4 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain AraC_binding PF02311.19 gi|134046073|ref|YP_001097559.1| - 0.00024 21.0 0.0 0.00039 20.3 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|134046073|ref|YP_001097559.1| - 0.0021 17.7 0.1 0.0037 16.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.18 gi|134046073|ref|YP_001097559.1| - 0.013 15.4 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase SH3_5 PF08460.10 gi|134046073|ref|YP_001097559.1| - 0.11 12.6 0.1 0.19 11.9 0.1 1.4 1 0 0 1 1 1 0 Bacterial SH3 domain 4HBT_2 PF13279.6 gi|134046074|ref|YP_001097560.1| - 1.1e-08 35.6 0.0 1.3e-08 35.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|134046074|ref|YP_001097560.1| - 0.00011 22.5 0.0 0.00015 22.0 0.0 1.4 1 1 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|134046074|ref|YP_001097560.1| - 0.0014 17.9 0.1 0.098 11.9 0.0 2.1 1 1 1 2 2 2 2 Acyl-ACP thioesterase AMP-binding PF00501.28 gi|134046075|ref|YP_001097561.1| - 1e-113 380.2 0.0 1.2e-113 379.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|134046075|ref|YP_001097561.1| - 1.4e-18 67.6 0.0 3e-18 66.6 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF3784 PF12650.7 gi|134046075|ref|YP_001097561.1| - 0.023 14.9 0.4 0.56 10.4 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) ATP-grasp_3 PF02655.14 gi|134046077|ref|YP_001097563.1| - 8.9e-40 136.4 0.2 1.3e-39 135.8 0.2 1.2 1 0 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|134046077|ref|YP_001097563.1| - 3.9e-10 39.9 0.0 6.2e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 pre ATP-grasp 3 domain ATPgrasp_Ter PF15632.6 gi|134046077|ref|YP_001097563.1| - 0.0004 20.1 0.0 0.00069 19.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.6 gi|134046077|ref|YP_001097563.1| - 0.0078 15.5 0.1 0.052 12.8 0.0 2.1 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp DUF2124 PF09897.9 gi|134046078|ref|YP_001097564.1| - 7.9e-45 152.2 0.3 8.9e-45 152.0 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) DJ-1_PfpI PF01965.24 gi|134046078|ref|YP_001097564.1| - 0.013 15.3 0.0 0.022 14.6 0.0 1.4 1 1 0 1 1 1 0 DJ-1/PfpI family HIP1_clath_bdg PF16515.5 gi|134046079|ref|YP_001097565.1| - 0.02 15.5 2.9 0.026 15.1 2.9 1.1 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF2721 PF11026.8 gi|134046079|ref|YP_001097565.1| - 0.022 14.6 0.7 0.026 14.4 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) CENP-H PF05837.12 gi|134046079|ref|YP_001097565.1| - 0.04 14.3 1.1 0.054 13.9 1.1 1.1 1 0 0 1 1 1 0 Centromere protein H (CENP-H) DUF3899 PF13038.6 gi|134046079|ref|YP_001097565.1| - 0.063 13.8 0.0 0.082 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3899) UME PF08064.13 gi|134046079|ref|YP_001097565.1| - 0.077 12.9 0.1 0.08 12.9 0.1 1.2 1 0 0 1 1 1 0 UME (NUC010) domain CMD PF02627.20 gi|134046080|ref|YP_001097566.1| - 1.7e-15 56.9 0.0 2.1e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Met_10 PF02475.16 gi|134046081|ref|YP_001097567.1| - 8.9e-69 231.2 0.5 1.1e-68 230.9 0.5 1.1 1 0 0 1 1 1 1 Met-10+ like-protein RrnaAD PF00398.20 gi|134046081|ref|YP_001097567.1| - 0.00022 20.4 0.0 0.00036 19.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.11 gi|134046081|ref|YP_001097567.1| - 0.0026 16.8 0.1 0.0043 16.1 0.1 1.5 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|134046081|ref|YP_001097567.1| - 0.003 17.1 0.0 0.018 14.6 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|134046081|ref|YP_001097567.1| - 0.01 16.5 0.0 0.039 14.7 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|134046081|ref|YP_001097567.1| - 0.021 14.8 0.2 0.094 12.6 0.0 2.2 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|134046081|ref|YP_001097567.1| - 0.04 13.4 0.0 0.12 11.8 0.0 1.8 1 1 1 2 2 2 0 Putative methyltransferase DUF538 PF04398.12 gi|134046081|ref|YP_001097567.1| - 0.053 14.0 0.4 0.15 12.5 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF538 Methyltransf_31 PF13847.6 gi|134046081|ref|YP_001097567.1| - 0.053 13.3 0.0 0.11 12.3 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|134046081|ref|YP_001097567.1| - 0.11 12.1 0.0 0.27 10.8 0.0 1.6 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F DJ-1_PfpI PF01965.24 gi|134046082|ref|YP_001097568.1| - 1.4e-41 142.0 0.3 1.6e-41 141.9 0.3 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 gi|134046082|ref|YP_001097568.1| - 2.1e-05 24.2 0.0 3e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 C-terminal domain found in long catalases NAD_kinase PF01513.21 gi|134046082|ref|YP_001097568.1| - 0.059 12.6 0.1 0.19 10.9 0.0 1.7 2 0 0 2 2 2 0 ATP-NAD kinase GATase PF00117.28 gi|134046082|ref|YP_001097568.1| - 0.062 13.1 0.0 0.091 12.5 0.0 1.4 1 1 0 1 1 1 0 Glutamine amidotransferase class-I Exonuc_VII_L PF02601.15 gi|134046082|ref|YP_001097568.1| - 0.071 12.7 0.1 0.1 12.1 0.1 1.3 1 1 0 1 1 1 0 Exonuclease VII, large subunit VEGFR-2_TMD PF17988.1 gi|134046083|ref|YP_001097569.1| - 0.083 12.3 0.0 0.67 9.4 0.1 2.1 2 0 0 2 2 2 0 VEGFR-2 Transmembrane domain UPF0146 PF03686.13 gi|134046084|ref|YP_001097570.1| - 5.4e-36 123.3 0.0 6.2e-36 123.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Lipoprotein_15 PF03640.15 gi|134046084|ref|YP_001097570.1| - 0.0072 15.9 0.1 0.011 15.2 0.1 1.3 1 0 0 1 1 1 1 Secreted repeat of unknown function TrkA_N PF02254.18 gi|134046084|ref|YP_001097570.1| - 0.02 15.1 0.1 0.043 14.1 0.0 1.4 2 0 0 2 2 2 0 TrkA-N domain TatD_DNase PF01026.21 gi|134046085|ref|YP_001097571.1| - 2.3e-24 86.2 0.1 2.9e-24 85.8 0.1 1.1 1 0 0 1 1 1 1 TatD related DNase Peptidase_A24 PF01478.18 gi|134046086|ref|YP_001097572.1| - 4.8e-14 52.7 12.8 7e-14 52.1 12.2 1.6 1 1 0 1 1 1 1 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|134046086|ref|YP_001097572.1| - 5e-08 33.3 1.5 5e-08 33.3 1.5 3.6 4 1 0 4 4 4 1 Archaeal Peptidase A24 C-terminus Type II MTS PF05175.14 gi|134046087|ref|YP_001097573.1| - 2.7e-46 157.2 0.1 3.1e-46 157.0 0.1 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|134046087|ref|YP_001097573.1| - 5.7e-11 42.4 0.1 9e-11 41.8 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|134046087|ref|YP_001097573.1| - 1e-10 41.5 0.4 1.4e-10 41.1 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|134046087|ref|YP_001097573.1| - 1.1e-09 38.8 0.0 1.7e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|134046087|ref|YP_001097573.1| - 2e-09 37.6 0.4 3.1e-09 36.9 0.4 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|134046087|ref|YP_001097573.1| - 2.5e-08 33.3 0.2 3.1e-08 33.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_16 PF10294.9 gi|134046087|ref|YP_001097573.1| - 2.6e-08 33.8 0.4 3.4e-08 33.4 0.4 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Cons_hypoth95 PF03602.15 gi|134046087|ref|YP_001097573.1| - 8.4e-08 32.1 0.0 1.1e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|134046087|ref|YP_001097573.1| - 7.8e-07 29.1 0.0 1e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|134046087|ref|YP_001097573.1| - 2.6e-06 28.1 0.0 3.9e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|134046087|ref|YP_001097573.1| - 3.3e-06 27.0 0.8 8.1e-06 25.7 0.2 1.7 1 1 1 2 2 2 1 Met-10+ like-protein CMAS PF02353.20 gi|134046087|ref|YP_001097573.1| - 1.2e-05 24.8 0.1 1.4e-05 24.5 0.1 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|134046087|ref|YP_001097573.1| - 3e-05 23.7 0.2 5.4e-05 22.8 0.2 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltrans_SAM PF10672.9 gi|134046087|ref|YP_001097573.1| - 0.00031 20.0 0.1 0.00037 19.7 0.1 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_11 PF08241.12 gi|134046087|ref|YP_001097573.1| - 0.00033 21.2 0.0 0.00075 20.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.14 gi|134046087|ref|YP_001097573.1| - 0.00039 19.9 3.0 0.00072 19.0 1.1 1.9 1 1 1 2 2 2 1 Tellurite resistance protein TehB tRNA_U5-meth_tr PF05958.11 gi|134046087|ref|YP_001097573.1| - 0.00062 18.8 0.0 0.00077 18.5 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Ubie_methyltran PF01209.18 gi|134046087|ref|YP_001097573.1| - 0.00078 18.8 0.2 0.0016 17.8 0.1 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family GidB PF02527.15 gi|134046087|ref|YP_001097573.1| - 0.0011 18.4 0.1 0.0015 17.9 0.1 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G NodS PF05401.11 gi|134046087|ref|YP_001097573.1| - 0.0021 17.7 0.0 0.0029 17.3 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) UPF0020 PF01170.18 gi|134046087|ref|YP_001097573.1| - 0.0056 16.4 0.1 0.0089 15.7 0.1 1.3 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 TRM PF02005.16 gi|134046087|ref|YP_001097573.1| - 0.0069 15.6 0.1 0.0086 15.3 0.1 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PCMT PF01135.19 gi|134046087|ref|YP_001097573.1| - 0.0091 15.8 0.1 0.012 15.4 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|134046087|ref|YP_001097573.1| - 0.011 15.2 0.2 0.016 14.7 0.2 1.4 1 1 0 1 1 1 0 Putative methyltransferase AviRa PF11599.8 gi|134046087|ref|YP_001097573.1| - 0.057 12.9 0.3 0.21 11.0 0.1 1.9 1 1 1 2 2 2 0 RRNA methyltransferase AviRa OTCace PF00185.24 gi|134046088|ref|YP_001097574.1| - 2.1e-55 187.1 0.0 3.2e-55 186.5 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|134046088|ref|YP_001097574.1| - 7.7e-49 165.5 0.0 1.5e-48 164.6 0.0 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EamA PF00892.20 gi|134046089|ref|YP_001097575.1| - 1.3e-31 109.5 47.6 1.1e-15 58.0 23.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family SBP_bac_3 PF00497.20 gi|134046090|ref|YP_001097576.1| - 1.1e-49 168.9 0.1 1.4e-49 168.6 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|134046090|ref|YP_001097576.1| - 0.0019 17.8 0.4 0.12 11.9 0.4 2.8 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Lig_chan-Glu_bd PF10613.9 gi|134046090|ref|YP_001097576.1| - 0.018 15.3 0.0 0.46 10.7 0.0 2.5 1 1 0 1 1 1 0 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|134046090|ref|YP_001097576.1| - 0.034 14.1 0.1 0.055 13.4 0.1 1.5 1 1 0 1 1 1 0 NMT1/THI5 like DUF2969 PF11184.8 gi|134046090|ref|YP_001097576.1| - 0.21 12.1 1.8 0.41 11.1 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2969) IGPD PF00475.18 gi|134046091|ref|YP_001097577.1| - 5.1e-57 192.2 0.3 6.4e-57 191.9 0.3 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase DHHA1 PF02272.19 gi|134046092|ref|YP_001097578.1| - 7.9e-14 52.2 0.6 7.9e-14 52.2 0.6 2.2 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|134046092|ref|YP_001097578.1| - 0.0024 18.1 0.0 0.0051 17.0 0.0 1.5 1 0 0 1 1 1 1 DHH family AMMECR1 PF01871.17 gi|134046093|ref|YP_001097579.1| - 8.6e-50 168.6 0.0 9.8e-50 168.4 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 PBP_like PF12727.7 gi|134046094|ref|YP_001097580.1| - 1.9e-53 180.4 0.0 3.2e-53 179.7 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|134046094|ref|YP_001097580.1| - 6.9e-44 149.4 0.1 1.1e-43 148.7 0.1 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|134046094|ref|YP_001097580.1| - 1.5e-25 89.6 0.0 2.8e-25 88.7 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|134046094|ref|YP_001097580.1| - 6.2e-12 45.5 0.0 1.4e-11 44.4 0.0 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) DUF1829 PF08862.10 gi|134046094|ref|YP_001097580.1| - 0.068 13.7 0.9 1.3 9.6 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function DUF1829 T2SSE PF00437.20 gi|134046094|ref|YP_001097580.1| - 0.14 11.2 0.2 0.3 10.1 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Radical_SAM PF04055.21 gi|134046095|ref|YP_001097581.1| - 2.8e-20 73.3 0.3 2.8e-20 73.3 0.3 2.2 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|134046095|ref|YP_001097581.1| - 9.2e-06 26.0 0.3 9.2e-06 26.0 0.3 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Zn-ribbon_8 PF09723.10 gi|134046095|ref|YP_001097581.1| - 0.001 19.2 2.9 2.2 8.5 0.2 3.7 3 0 0 3 3 3 2 Zinc ribbon domain Fer4_14 PF13394.6 gi|134046095|ref|YP_001097581.1| - 0.015 15.5 0.1 0.015 15.5 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Zn_Tnp_IS1595 PF12760.7 gi|134046095|ref|YP_001097581.1| - 0.1 12.6 4.9 10 6.2 0.1 3.6 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|134046095|ref|YP_001097581.1| - 0.15 11.8 0.5 0.15 11.8 0.5 3.6 3 0 0 3 3 3 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|134046095|ref|YP_001097581.1| - 1.7 8.6 7.8 6.7 6.8 0.4 3.5 3 0 0 3 3 3 0 PhnA Zinc-Ribbon DUF98 PF01947.16 gi|134046096|ref|YP_001097582.1| - 2e-20 73.2 0.1 1.8e-18 66.9 0.1 2.1 1 1 0 1 1 1 1 p-hydroxybenzoic acid synthase PEP_hydrolase PF09370.10 gi|134046096|ref|YP_001097582.1| - 0.06 12.6 0.0 0.084 12.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like DUF5381 PF17353.2 gi|134046096|ref|YP_001097582.1| - 1.5 8.6 5.5 0.89 9.3 2.5 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5381) Med9 PF07544.13 gi|134046097|ref|YP_001097583.1| - 0.00013 22.0 22.6 0.073 13.2 0.2 4.7 2 2 2 4 4 4 1 RNA polymerase II transcription mediator complex subunit 9 ORF11CD3 PF10549.9 gi|134046097|ref|YP_001097583.1| - 0.016 15.3 0.6 0.056 13.6 0.6 2.1 1 0 0 1 1 1 0 ORF11CD3 domain Tup_N PF08581.10 gi|134046097|ref|YP_001097583.1| - 0.019 15.3 9.1 0.019 15.3 9.1 4.0 1 1 4 5 5 5 0 Tup N-terminal Lebercilin PF15619.6 gi|134046097|ref|YP_001097583.1| - 0.03 14.0 28.5 0.042 13.5 28.5 1.3 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease FAM167 PF11652.8 gi|134046097|ref|YP_001097583.1| - 0.057 13.9 1.2 0.057 13.9 1.2 3.8 1 1 2 3 3 3 0 FAM167 DELLA PF12041.8 gi|134046097|ref|YP_001097583.1| - 0.083 12.8 2.4 1.5 8.8 0.2 2.8 2 1 1 3 3 3 0 Transcriptional regulator DELLA protein N terminal YkyA PF10368.9 gi|134046097|ref|YP_001097583.1| - 0.11 12.1 33.0 0.19 11.4 15.1 2.6 1 1 0 2 2 2 0 Putative cell-wall binding lipoprotein YtxH PF12732.7 gi|134046097|ref|YP_001097583.1| - 0.26 11.9 18.8 5.1e+03 -1.9 18.8 3.7 1 1 0 1 1 1 0 YtxH-like protein ATG16 PF08614.11 gi|134046097|ref|YP_001097583.1| - 0.39 10.9 22.3 0.78 9.9 12.0 2.8 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Occludin_ELL PF07303.13 gi|134046097|ref|YP_001097583.1| - 0.5 11.1 23.0 4.1 8.2 3.1 3.2 1 1 2 3 3 3 0 Occludin homology domain LPP PF04728.13 gi|134046097|ref|YP_001097583.1| - 0.53 10.7 10.3 0.28 11.6 0.4 4.0 4 1 1 5 5 4 0 Lipoprotein leucine-zipper DUF883 PF05957.13 gi|134046097|ref|YP_001097583.1| - 0.55 10.9 12.6 0.83 10.3 1.8 3.0 2 2 0 3 3 3 0 Bacterial protein of unknown function (DUF883) Mce4_CUP1 PF11887.8 gi|134046097|ref|YP_001097583.1| - 0.56 9.6 4.3 7.4 5.9 0.6 2.1 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF4200 PF13863.6 gi|134046097|ref|YP_001097583.1| - 0.74 10.2 35.5 2.1 8.8 16.0 2.9 1 1 0 2 2 2 0 Domain of unknown function (DUF4200) Spc7 PF08317.11 gi|134046097|ref|YP_001097583.1| - 0.81 8.5 31.6 0.093 11.6 13.1 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein Tweety PF04906.13 gi|134046097|ref|YP_001097583.1| - 0.94 8.1 14.1 1.2 7.7 4.2 2.2 1 1 1 2 2 2 0 Tweety Laminin_II PF06009.12 gi|134046097|ref|YP_001097583.1| - 1.1 9.3 23.1 1.3 9.1 8.0 3.0 1 1 2 3 3 3 0 Laminin Domain II MerR-DNA-bind PF09278.11 gi|134046097|ref|YP_001097583.1| - 1.2 9.7 9.1 2.7 8.6 0.0 4.0 3 2 1 4 4 4 0 MerR, DNA binding NPV_P10 PF05531.12 gi|134046097|ref|YP_001097583.1| - 1.3 9.5 14.7 9.3 6.8 7.6 3.5 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein YabA PF06156.13 gi|134046097|ref|YP_001097583.1| - 1.4 9.6 24.5 4.9 7.8 0.4 3.9 1 1 3 4 4 4 0 Initiation control protein YabA MtrB PF05440.12 gi|134046097|ref|YP_001097583.1| - 1.5 9.3 4.8 3.6 8.1 0.1 3.2 1 1 3 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B Troponin PF00992.20 gi|134046097|ref|YP_001097583.1| - 1.6 9.0 28.9 2.9 8.2 13.5 2.4 1 1 1 2 2 2 0 Troponin XhlA PF10779.9 gi|134046097|ref|YP_001097583.1| - 3.3 8.0 31.8 0.17 12.1 5.1 4.8 2 2 3 5 5 5 0 Haemolysin XhlA EF-hand_2 PF09068.11 gi|134046097|ref|YP_001097583.1| - 3.5 7.8 6.9 1.4 9.1 3.0 2.2 1 1 1 2 2 2 0 EF hand Syntaxin_2 PF14523.6 gi|134046097|ref|YP_001097583.1| - 3.7 8.0 21.8 10 6.5 10.0 2.9 1 1 1 2 2 2 0 Syntaxin-like protein DUF948 PF06103.11 gi|134046097|ref|YP_001097583.1| - 5.8 7.2 13.5 1.1 9.6 2.0 3.2 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) FKS1_dom1 PF14288.6 gi|134046097|ref|YP_001097583.1| - 6.1 7.2 9.6 1.4 9.3 3.7 2.4 1 1 1 2 2 2 0 1,3-beta-glucan synthase subunit FKS1, domain-1 DASH_Dam1 PF08653.10 gi|134046097|ref|YP_001097583.1| - 7.6 6.4 6.5 8.2 6.3 0.2 3.5 4 0 0 4 4 4 0 DASH complex subunit Dam1 DUF724 PF05266.14 gi|134046097|ref|YP_001097583.1| - 8.2 6.2 27.1 1.2 9.0 9.9 2.7 1 1 1 2 2 1 0 Protein of unknown function (DUF724) DUF1664 PF07889.12 gi|134046097|ref|YP_001097583.1| - 9.1 6.3 21.0 0.77 9.8 3.9 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) HAD PF12710.7 gi|134046098|ref|YP_001097584.1| - 4.9e-20 72.7 0.0 5.9e-20 72.5 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|134046098|ref|YP_001097584.1| - 3.5e-16 60.1 0.4 4.4e-16 59.8 0.4 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|134046098|ref|YP_001097584.1| - 1.5e-11 44.6 2.2 1e-09 38.6 0.5 2.9 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|134046098|ref|YP_001097584.1| - 4.9e-09 36.5 2.0 8.8e-08 32.4 2.0 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|134046098|ref|YP_001097584.1| - 5.6e-08 32.5 0.1 0.00016 21.2 0.0 2.1 2 0 0 2 2 2 2 Putative Phosphatase S6PP PF05116.13 gi|134046098|ref|YP_001097584.1| - 0.0085 15.6 0.0 0.067 12.7 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Acid_PPase PF12689.7 gi|134046098|ref|YP_001097584.1| - 0.082 12.8 0.0 0.21 11.4 0.0 1.7 2 1 0 2 2 2 0 Acid Phosphatase SAICAR_synt PF01259.18 gi|134046099|ref|YP_001097585.1| - 1.6e-60 204.9 1.4 1.9e-60 204.6 1.4 1.1 1 0 0 1 1 1 1 SAICAR synthetase Iso_dh PF00180.20 gi|134046100|ref|YP_001097586.1| - 1.5e-103 346.7 1.5 1.7e-103 346.5 1.5 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase EF-G-binding_N PF07299.11 gi|134046101|ref|YP_001097587.1| - 0.023 15.2 0.3 0.034 14.7 0.3 1.6 1 1 0 1 1 1 0 Elongation factor G-binding protein, N-terminal DUF123 PF01986.16 gi|134046103|ref|YP_001097589.1| - 2.4e-26 92.0 0.1 5.3e-26 91.0 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF123 HhH-GPD PF00730.25 gi|134046103|ref|YP_001097589.1| - 2.4e-23 82.6 0.0 4.5e-23 81.8 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|134046103|ref|YP_001097589.1| - 1.7e-09 37.0 0.1 6.5e-09 35.2 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif GIY-YIG PF01541.24 gi|134046103|ref|YP_001097589.1| - 0.003 17.8 2.6 0.0054 17.0 0.2 2.4 2 0 0 2 2 2 1 GIY-YIG catalytic domain DUF2247 PF10004.9 gi|134046103|ref|YP_001097589.1| - 0.0094 15.7 0.6 1.7 8.4 0.3 2.6 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2247) DUF763 PF05559.11 gi|134046103|ref|YP_001097589.1| - 0.041 13.1 0.2 0.065 12.4 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF763) HHH_5 PF14520.6 gi|134046103|ref|YP_001097589.1| - 0.045 14.4 0.1 0.63 10.7 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain Tex_N PF09371.10 gi|134046103|ref|YP_001097589.1| - 0.047 13.4 1.0 0.19 11.4 0.0 2.3 2 1 1 3 3 3 0 Tex-like protein N-terminal domain DUF432 PF04254.13 gi|134046104|ref|YP_001097590.1| - 2.7e-26 92.2 0.1 4e-26 91.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF432) IL4_i_Ig PF18258.1 gi|134046104|ref|YP_001097590.1| - 0.036 14.3 0.1 0.051 13.8 0.1 1.3 1 0 0 1 1 1 0 Interleukin-4 inducing immunoglobulin-binding domain MS_channel PF00924.18 gi|134046105|ref|YP_001097591.1| - 9.7e-54 182.0 3.1 9.7e-54 182.0 3.1 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel PgpA PF04608.13 gi|134046105|ref|YP_001097591.1| - 0.0024 17.9 1.9 0.0024 17.9 1.9 1.8 2 0 0 2 2 2 1 Phosphatidylglycerophosphatase A YrvL PF14184.6 gi|134046105|ref|YP_001097591.1| - 0.019 15.1 9.2 0.019 15.1 9.2 2.2 2 0 0 2 2 2 0 Regulatory protein YrvL FAM70 PF14967.6 gi|134046105|ref|YP_001097591.1| - 1.9 7.9 4.5 0.59 9.6 1.1 1.7 2 0 0 2 2 2 0 FAM70 protein HemY_N PF07219.13 gi|134046106|ref|YP_001097592.1| - 0.00081 19.6 10.6 0.0052 17.0 1.0 3.0 3 0 0 3 3 3 2 HemY protein N-terminus DUF2975 PF11188.8 gi|134046106|ref|YP_001097592.1| - 0.00099 19.0 15.6 0.12 12.3 3.4 2.3 2 1 0 2 2 2 2 Protein of unknown function (DUF2975) DAP10 PF07213.11 gi|134046106|ref|YP_001097592.1| - 0.0062 16.5 3.6 0.086 12.8 0.2 2.4 2 0 0 2 2 2 1 DAP10 membrane protein EI24 PF07264.11 gi|134046106|ref|YP_001097592.1| - 0.33 11.2 15.8 1.2 9.4 15.8 2.0 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Anoctamin PF04547.12 gi|134046106|ref|YP_001097592.1| - 0.69 8.7 4.0 2.7 6.7 0.1 2.1 2 0 0 2 2 2 0 Calcium-activated chloride channel NPCC PF08058.11 gi|134046106|ref|YP_001097592.1| - 1.8 8.6 4.3 2.4 8.2 2.1 1.9 2 0 0 2 2 2 0 Nuclear pore complex component RseC_MucC PF04246.12 gi|134046106|ref|YP_001097592.1| - 2.2 8.2 10.1 6.9 6.6 1.2 2.2 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC PHO4 PF01384.20 gi|134046106|ref|YP_001097592.1| - 2.6 7.0 5.0 4.1 6.4 5.0 1.3 1 1 0 1 1 1 0 Phosphate transporter family HEPN PF05168.14 gi|134046107|ref|YP_001097593.1| - 1.8e-05 24.9 2.7 2e-05 24.7 1.4 1.7 1 1 1 2 2 2 1 HEPN domain Sec6 PF06046.13 gi|134046107|ref|YP_001097593.1| - 9.8e-05 20.9 0.8 0.00012 20.7 0.8 1.1 1 0 0 1 1 1 1 Exocyst complex component Sec6 Polbeta PF18765.1 gi|134046108|ref|YP_001097594.1| - 8.5e-09 35.4 0.4 8.5e-09 35.4 0.4 2.0 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|134046108|ref|YP_001097594.1| - 3.2e-07 30.5 0.1 8.8e-07 29.1 0.1 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain HTH_34 PF13601.6 gi|134046108|ref|YP_001097594.1| - 0.0082 16.3 0.5 0.015 15.5 0.5 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Crr6 PF08847.11 gi|134046108|ref|YP_001097594.1| - 0.021 14.5 1.2 0.092 12.4 0.1 2.0 2 0 0 2 2 2 0 Chlororespiratory reduction 6 Adenyl_cycl_N PF12633.7 gi|134046108|ref|YP_001097594.1| - 0.03 14.2 0.1 0.051 13.5 0.1 1.5 1 1 0 1 1 1 0 Adenylate cyclase NT domain Peptidase_M10 PF00413.24 gi|134046108|ref|YP_001097594.1| - 0.077 12.8 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Matrixin HTH_41 PF14502.6 gi|134046108|ref|YP_001097594.1| - 0.15 11.7 0.2 0.27 11.0 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4600 PF15372.6 gi|134046108|ref|YP_001097594.1| - 1.4 9.4 7.9 0.56 10.6 2.4 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4600) Sulfate_transp PF00916.20 gi|134046109|ref|YP_001097595.1| - 6.2e-85 285.2 30.9 6.2e-85 285.2 30.9 1.5 1 1 1 2 2 2 1 Sulfate permease family STAS PF01740.21 gi|134046109|ref|YP_001097595.1| - 2.7e-16 59.3 0.1 4.8e-16 58.4 0.1 1.4 1 0 0 1 1 1 1 STAS domain Fusion_gly PF00523.18 gi|134046109|ref|YP_001097595.1| - 0.082 11.1 0.0 0.13 10.5 0.0 1.3 1 0 0 1 1 1 0 Fusion glycoprotein F0 Class_IIIsignal PF04021.12 gi|134046110|ref|YP_001097596.1| - 2.1e-09 37.1 1.0 3.2e-09 36.5 1.0 1.3 1 0 0 1 1 1 1 Class III signal peptide ANF_receptor PF01094.28 gi|134046110|ref|YP_001097596.1| - 0.055 12.6 0.0 0.06 12.4 0.0 1.0 1 0 0 1 1 1 0 Receptor family ligand binding region DUF3042 PF11240.8 gi|134046110|ref|YP_001097596.1| - 0.6 10.2 2.5 1.3 9.1 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) HTH_24 PF13412.6 gi|134046111|ref|YP_001097597.1| - 5.2e-07 29.1 0.1 1.3e-06 27.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|134046111|ref|YP_001097597.1| - 2.2e-06 27.5 0.2 4.3e-06 26.6 0.2 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|134046111|ref|YP_001097597.1| - 3.3e-06 26.9 0.0 8.3e-06 25.6 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|134046111|ref|YP_001097597.1| - 7.6e-06 25.7 0.1 2.3e-05 24.2 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|134046111|ref|YP_001097597.1| - 8.6e-05 22.3 0.0 0.00016 21.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|134046111|ref|YP_001097597.1| - 0.00017 21.3 0.1 0.00028 20.6 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sulfolobus_pRN PF05584.11 gi|134046111|ref|YP_001097597.1| - 0.0013 18.7 0.2 0.0027 17.7 0.2 1.5 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein DprA_WH PF17782.1 gi|134046111|ref|YP_001097597.1| - 0.0028 17.7 0.0 0.0041 17.2 0.0 1.3 1 0 0 1 1 1 1 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|134046111|ref|YP_001097597.1| - 0.01 15.8 0.2 0.023 14.7 0.2 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|134046111|ref|YP_001097597.1| - 0.013 15.5 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|134046111|ref|YP_001097597.1| - 0.016 14.9 0.1 0.038 13.7 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|134046111|ref|YP_001097597.1| - 0.028 14.3 0.2 0.028 14.3 0.2 1.9 2 1 0 2 2 2 0 TFIIE alpha subunit HTH_11 PF08279.12 gi|134046111|ref|YP_001097597.1| - 0.028 14.4 0.1 0.063 13.2 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_9 PF08221.11 gi|134046111|ref|YP_001097597.1| - 0.042 13.9 0.1 0.16 12.0 0.1 2.0 2 0 0 2 2 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|134046111|ref|YP_001097597.1| - 0.043 14.2 0.6 0.56 10.6 0.0 2.7 2 1 1 3 3 3 0 Transcriptional regulator HTH_26 PF13443.6 gi|134046111|ref|YP_001097597.1| - 0.05 14.0 0.2 0.2 12.1 0.1 2.0 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Smim3 PF17307.2 gi|134046111|ref|YP_001097597.1| - 0.075 12.5 3.0 1.7 8.2 1.0 2.3 2 0 0 2 2 2 0 Small integral membrane protein 3 HTH_3 PF01381.22 gi|134046111|ref|YP_001097597.1| - 0.086 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_36 PF13730.6 gi|134046111|ref|YP_001097597.1| - 0.098 12.6 0.0 0.32 11.0 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.17 gi|134046111|ref|YP_001097597.1| - 0.12 12.2 0.6 0.33 10.8 0.2 1.8 2 0 0 2 2 2 0 HxlR-like helix-turn-helix ATP-cone PF03477.16 gi|134046114|ref|YP_001097600.1| - 5.4e-07 30.1 7.7 0.0097 16.5 1.8 3.6 2 1 1 3 3 3 2 ATP cone domain SurA_N_3 PF13624.6 gi|134046114|ref|YP_001097600.1| - 7.9e-05 22.5 2.4 0.0016 18.3 0.0 2.4 1 1 0 2 2 2 1 SurA N-terminal domain DUF3921 PF13060.6 gi|134046114|ref|YP_001097600.1| - 0.00034 20.6 1.8 0.43 10.6 0.3 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF3921) DUF5352 PF17303.2 gi|134046114|ref|YP_001097600.1| - 0.0005 20.0 0.8 0.81 9.5 0.1 2.1 2 0 0 2 2 2 2 Family of unknown function (DUF5352) DUF4140 PF13600.6 gi|134046114|ref|YP_001097600.1| - 0.00095 19.6 3.9 0.71 10.4 0.9 2.2 2 0 0 2 2 2 2 N-terminal domain of unknown function (DUF4140) PSK_trans_fac PF07704.11 gi|134046114|ref|YP_001097600.1| - 0.0011 19.7 6.0 0.44 11.3 0.6 2.3 2 0 0 2 2 2 2 Rv0623-like transcription factor DUF1013 PF06242.11 gi|134046114|ref|YP_001097600.1| - 0.0032 17.5 4.3 0.22 11.5 0.3 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1013) Poly_export PF02563.16 gi|134046114|ref|YP_001097600.1| - 0.0045 17.2 1.8 3.4 8.0 0.1 3.3 2 2 2 4 4 4 0 Polysaccharide biosynthesis/export protein MCR_C PF04609.12 gi|134046114|ref|YP_001097600.1| - 0.0099 15.0 4.9 0.032 13.3 0.8 2.1 1 1 1 2 2 2 1 Methyl-coenzyme M reductase operon protein C CAAP1 PF15335.6 gi|134046114|ref|YP_001097600.1| - 0.011 16.3 1.2 0.67 10.5 0.0 3.0 2 1 1 3 3 2 0 Caspase activity and apoptosis inhibitor 1 DUF4407 PF14362.6 gi|134046114|ref|YP_001097600.1| - 0.012 14.9 2.0 0.016 14.6 2.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) IPPT PF01715.17 gi|134046114|ref|YP_001097600.1| - 0.013 15.3 4.9 0.066 13.0 4.8 1.9 1 1 0 1 1 1 0 IPP transferase ANAPC2 PF08672.11 gi|134046114|ref|YP_001097600.1| - 0.014 15.9 7.9 2.4 8.7 1.2 4.2 3 1 1 4 4 4 0 Anaphase promoting complex (APC) subunit 2 UPF0180 PF03698.13 gi|134046114|ref|YP_001097600.1| - 0.017 15.3 1.2 3.5 7.9 0.5 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) Cep57_MT_bd PF06657.13 gi|134046114|ref|YP_001097600.1| - 0.019 15.4 11.2 0.77 10.3 1.6 2.7 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 EF-hand_10 PF14788.6 gi|134046114|ref|YP_001097600.1| - 0.027 14.3 1.4 8.3 6.4 0.1 2.5 2 0 0 2 2 2 0 EF hand DXP_reductoisom PF02670.16 gi|134046114|ref|YP_001097600.1| - 0.027 15.2 0.6 9.4 7.0 0.1 2.2 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase L27_1 PF09058.10 gi|134046114|ref|YP_001097600.1| - 0.028 14.4 7.3 1.4 9.0 0.8 2.2 2 0 0 2 2 2 0 L27_1 DUF4403 PF14356.6 gi|134046114|ref|YP_001097600.1| - 0.029 13.0 0.4 0.36 9.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4403) Mod_r PF07200.13 gi|134046114|ref|YP_001097600.1| - 0.039 14.1 11.7 0.26 11.4 2.3 3.1 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein AHD PF17793.1 gi|134046114|ref|YP_001097600.1| - 0.047 13.5 1.5 10 6.0 0.1 2.7 2 2 0 2 2 2 0 ANC1 homology domain (AHD) DUF668 PF05003.12 gi|134046114|ref|YP_001097600.1| - 0.05 14.1 0.9 9.1 6.8 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF668) DUF1456 PF07308.13 gi|134046114|ref|YP_001097600.1| - 0.085 13.2 2.3 11 6.4 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1456) DUF4976 PF16347.5 gi|134046114|ref|YP_001097600.1| - 0.09 13.0 1.4 15 5.9 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4976) RPN13_C PF16550.5 gi|134046114|ref|YP_001097600.1| - 0.097 12.8 3.8 6.9 6.9 0.6 2.6 1 1 1 2 2 2 0 UCH-binding domain DUF2482 PF10655.9 gi|134046114|ref|YP_001097600.1| - 0.12 12.9 10.5 1.3 9.6 0.8 2.7 3 0 0 3 3 2 0 Hypothetical protein of unknown function (DUF2482) Ribosomal_L29 PF00831.23 gi|134046114|ref|YP_001097600.1| - 0.12 12.4 12.3 5.9 6.9 2.4 3.8 2 2 0 2 2 2 0 Ribosomal L29 protein BSD PF03909.17 gi|134046114|ref|YP_001097600.1| - 0.15 12.1 1.5 16 5.6 0.1 2.4 2 0 0 2 2 2 0 BSD domain LtuB PF17455.2 gi|134046114|ref|YP_001097600.1| - 0.16 12.6 0.5 29 5.4 0.1 2.3 2 0 0 2 2 2 0 Late transcription unit B DUF1104 PF06518.11 gi|134046114|ref|YP_001097600.1| - 0.16 12.4 4.2 2.8 8.4 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1104) GrpE PF01025.19 gi|134046114|ref|YP_001097600.1| - 0.16 11.6 9.2 1.6 8.4 1.2 2.2 2 0 0 2 2 2 0 GrpE Inhibitor_I68 PF10468.9 gi|134046114|ref|YP_001097600.1| - 0.18 12.2 1.5 18 5.8 0.1 2.3 2 0 0 2 2 2 0 Carboxypeptidase inhibitor I68 DEK_C PF08766.11 gi|134046114|ref|YP_001097600.1| - 0.19 11.7 9.6 2.7 8.0 0.0 3.8 4 0 0 4 4 4 0 DEK C terminal domain DUF4749 PF15936.5 gi|134046114|ref|YP_001097600.1| - 0.2 12.8 3.2 14 6.9 0.2 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4749) DUF3153 PF11353.8 gi|134046114|ref|YP_001097600.1| - 0.21 11.1 6.8 5.8 6.4 0.2 3.0 2 1 0 3 3 3 0 Protein of unknown function (DUF3153) NAPRTase_C PF17956.1 gi|134046114|ref|YP_001097600.1| - 0.23 11.9 2.3 12 6.4 0.2 2.4 1 1 1 2 2 2 0 Nicotinate phosphoribosyltransferase C-terminal domain Mut7-C PF01927.16 gi|134046114|ref|YP_001097600.1| - 0.23 11.6 1.9 13 5.9 0.2 2.2 1 1 1 2 2 2 0 Mut7-C RNAse domain DUF1978 PF09321.10 gi|134046114|ref|YP_001097600.1| - 0.26 10.6 12.7 2.2 7.5 3.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1978) Phage_holin_7_1 PF16081.5 gi|134046114|ref|YP_001097600.1| - 0.27 11.4 0.0 0.66 10.2 0.0 1.6 2 0 0 2 2 1 0 Mycobacterial 2 TMS Phage Holin (M2 Hol) Family DUF4854 PF16146.5 gi|134046114|ref|YP_001097600.1| - 0.29 11.5 3.8 12 6.3 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4854) POTRA_1 PF08478.10 gi|134046114|ref|YP_001097600.1| - 0.31 11.4 2.5 20 5.6 0.1 2.7 3 0 0 3 3 2 0 POTRA domain, FtsQ-type Pex14_N PF04695.13 gi|134046114|ref|YP_001097600.1| - 0.39 11.3 4.5 10 6.7 0.3 2.3 2 0 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF3539 PF12058.8 gi|134046114|ref|YP_001097600.1| - 0.52 10.5 4.2 10 6.4 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3539) Efg1 PF10153.9 gi|134046114|ref|YP_001097600.1| - 0.67 10.3 5.1 10 6.5 0.4 2.2 2 0 0 2 2 2 0 rRNA-processing protein Efg1 TssC PF17541.2 gi|134046114|ref|YP_001097600.1| - 0.7 8.7 4.5 1.6 7.5 2.5 1.8 1 1 1 2 2 2 0 Type VI secretion system, TssC, VipB Brr6_like_C_C PF10104.9 gi|134046114|ref|YP_001097600.1| - 0.85 9.4 4.0 17 5.2 0.3 2.4 2 0 0 2 2 2 0 Di-sulfide bridge nucleocytoplasmic transport domain Arm-DNA-bind_5 PF17293.2 gi|134046114|ref|YP_001097600.1| - 0.9 10.0 4.7 15 6.1 0.5 2.3 2 0 0 2 2 2 0 Arm DNA-binding domain LPAM_1 PF08139.12 gi|134046114|ref|YP_001097600.1| - 1.2 9.8 2.5 1.8 9.2 2.5 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Prefoldin_2 PF01920.20 gi|134046114|ref|YP_001097600.1| - 1.2 9.1 16.3 4.6 7.3 3.7 2.4 1 1 1 2 2 2 0 Prefoldin subunit DUF87 PF01935.17 gi|134046114|ref|YP_001097600.1| - 1.2 9.1 5.2 2.4 8.2 1.1 2.0 1 1 1 2 2 2 0 Helicase HerA, central domain RPAP1_N PF08621.10 gi|134046114|ref|YP_001097600.1| - 1.3 8.9 14.6 7.8 6.4 3.5 3.2 2 0 0 2 2 2 0 RPAP1-like, N-terminal DUF3987 PF13148.6 gi|134046114|ref|YP_001097600.1| - 1.7 7.5 11.8 0.99 8.3 7.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3987) PET117 PF15786.5 gi|134046114|ref|YP_001097600.1| - 4.3 7.7 12.8 1.7 8.9 1.0 3.4 3 0 0 3 3 3 0 PET assembly of cytochrome c oxidase, mitochondrial Zn_ribbon_2 PF12674.7 gi|134046114|ref|YP_001097600.1| - 4.7 7.9 6.7 4.1 8.1 0.6 2.8 3 0 0 3 3 2 0 Putative zinc ribbon domain DUF5320 PF17253.2 gi|134046114|ref|YP_001097600.1| - 4.9 8.3 7.3 20 6.3 0.1 2.6 3 0 0 3 3 2 0 Family of unknown function (DUF5320) CemA PF03040.14 gi|134046114|ref|YP_001097600.1| - 5.2 6.9 7.8 13 5.6 2.2 2.2 1 1 1 2 2 2 0 CemA family PEP-utilisers_N PF05524.13 gi|134046114|ref|YP_001097600.1| - 5.6 7.2 10.5 11 6.2 1.9 2.2 1 1 1 2 2 2 0 PEP-utilising enzyme, N-terminal DUF3926 PF13080.6 gi|134046114|ref|YP_001097600.1| - 6.2 6.8 7.2 24 5.0 0.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3926) FapA PF03961.13 gi|134046114|ref|YP_001097600.1| - 6.3 5.3 8.1 19 3.7 7.9 1.7 1 1 0 1 1 1 0 Flagellar Assembly Protein A Snapin_Pallidin PF14712.6 gi|134046114|ref|YP_001097600.1| - 6.7 7.2 14.8 12 6.4 3.2 2.6 1 1 1 2 2 2 0 Snapin/Pallidin Phe_tRNA-synt_N PF02912.18 gi|134046114|ref|YP_001097600.1| - 7.1 6.6 10.3 7.9 6.5 0.2 3.4 4 0 0 4 4 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain ABC_tran_CTD PF16326.5 gi|134046114|ref|YP_001097600.1| - 9.4 6.6 19.8 9.9 6.5 5.2 2.8 2 2 0 2 2 2 0 ABC transporter C-terminal domain ABC_tran PF00005.27 gi|134046115|ref|YP_001097601.1| - 1.9e-35 122.4 0.1 3e-35 121.7 0.1 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|134046115|ref|YP_001097601.1| - 2.1e-07 30.6 0.1 3.5e-07 29.9 0.1 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|134046115|ref|YP_001097601.1| - 9.9e-06 25.6 0.0 0.058 13.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|134046115|ref|YP_001097601.1| - 3.1e-05 23.6 0.3 0.00011 21.8 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|134046115|ref|YP_001097601.1| - 0.00094 19.1 0.4 0.098 12.6 0.0 2.2 2 0 0 2 2 2 1 NTPase RsgA_GTPase PF03193.16 gi|134046115|ref|YP_001097601.1| - 0.0022 17.9 0.1 0.0039 17.1 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase G-alpha PF00503.20 gi|134046115|ref|YP_001097601.1| - 0.0033 16.7 0.0 0.004 16.4 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit SIS PF01380.22 gi|134046115|ref|YP_001097601.1| - 0.0038 17.1 0.1 0.014 15.3 0.0 2.0 2 0 0 2 2 2 1 SIS domain AAA_15 PF13175.6 gi|134046115|ref|YP_001097601.1| - 0.0042 16.9 0.8 0.2 11.4 0.4 2.2 1 1 1 2 2 2 1 AAA ATPase domain DUF87 PF01935.17 gi|134046115|ref|YP_001097601.1| - 0.0065 16.6 0.1 0.017 15.3 0.1 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_23 PF13476.6 gi|134046115|ref|YP_001097601.1| - 0.014 15.9 0.1 0.044 14.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|134046115|ref|YP_001097601.1| - 0.017 14.9 0.1 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|134046115|ref|YP_001097601.1| - 0.026 14.6 0.9 0.052 13.6 0.9 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|134046115|ref|YP_001097601.1| - 0.034 14.5 0.2 0.072 13.5 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain FtsK_SpoIIIE PF01580.18 gi|134046115|ref|YP_001097601.1| - 0.036 13.4 0.1 0.062 12.6 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|134046115|ref|YP_001097601.1| - 0.037 14.3 0.1 0.24 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|134046115|ref|YP_001097601.1| - 0.063 12.5 0.2 0.14 11.3 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.22 gi|134046115|ref|YP_001097601.1| - 0.083 13.3 0.2 0.24 11.8 0.1 1.9 2 0 0 2 2 1 0 RNA helicase IstB_IS21 PF01695.17 gi|134046115|ref|YP_001097601.1| - 0.084 12.6 0.0 0.88 9.3 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|134046115|ref|YP_001097601.1| - 0.085 12.6 0.0 0.27 10.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain NPCBM_assoc PF10633.9 gi|134046116|ref|YP_001097602.1| - 2.9e-12 46.7 4.3 5.7e-05 23.3 0.1 5.2 5 1 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|134046116|ref|YP_001097602.1| - 2.2e-08 34.3 8.6 0.0014 18.9 2.7 4.1 2 1 2 4 4 4 4 CARDB DUF11 PF01345.18 gi|134046116|ref|YP_001097602.1| - 0.00043 20.5 7.2 0.15 12.4 0.1 4.1 3 1 1 4 4 4 2 Domain of unknown function DUF11 DUF4832 PF16116.5 gi|134046116|ref|YP_001097602.1| - 0.023 14.6 0.1 2 8.2 0.1 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4832) Y_Y_Y PF07495.13 gi|134046116|ref|YP_001097602.1| - 0.045 13.7 3.0 7.5 6.6 0.0 3.3 4 0 0 4 4 4 0 Y_Y_Y domain CBM49 PF09478.10 gi|134046116|ref|YP_001097602.1| - 0.079 13.3 0.6 2.8 8.3 0.0 3.0 3 0 0 3 3 3 0 Carbohydrate binding domain CBM49 Alpha_adaptinC2 PF02883.20 gi|134046116|ref|YP_001097602.1| - 0.099 13.0 0.0 0.48 10.8 0.0 2.2 3 0 0 3 3 3 0 Adaptin C-terminal domain DUF1344 PF07076.11 gi|134046116|ref|YP_001097602.1| - 0.11 12.5 1.0 4.6 7.2 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1344) DUF2393 PF09624.10 gi|134046116|ref|YP_001097602.1| - 0.2 11.6 0.0 8.7 6.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) TM_helix PF05552.12 gi|134046117|ref|YP_001097603.1| - 0.015 15.3 0.5 0.022 14.7 0.5 1.3 1 0 0 1 1 1 0 Conserved TM helix PRIMA1 PF16101.5 gi|134046117|ref|YP_001097603.1| - 0.032 14.3 0.0 0.035 14.1 0.0 1.2 1 0 0 1 1 1 0 Proline-rich membrane anchor 1 FeoB_associated PF12669.7 gi|134046117|ref|YP_001097603.1| - 0.046 14.1 2.4 0.065 13.6 2.4 1.2 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein Alpha_GJ PF03229.13 gi|134046117|ref|YP_001097603.1| - 0.048 14.2 0.0 0.05 14.2 0.0 1.2 1 0 0 1 1 1 0 Alphavirus glycoprotein J VIT1 PF01988.19 gi|134046117|ref|YP_001097603.1| - 0.057 13.3 0.0 0.061 13.2 0.0 1.1 1 0 0 1 1 1 0 VIT family MacB_PCD PF12704.7 gi|134046118|ref|YP_001097604.1| - 2.1e-27 96.8 2.3 2.1e-27 96.8 2.3 2.7 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|134046118|ref|YP_001097604.1| - 4.9e-18 65.4 20.7 1.7e-17 63.6 9.3 3.4 3 0 0 3 3 3 2 FtsX-like permease family Yip1 PF04893.17 gi|134046118|ref|YP_001097604.1| - 0.015 15.0 8.5 0.088 12.5 7.1 2.2 2 0 0 2 2 2 0 Yip1 domain TPPK_C PF12555.8 gi|134046118|ref|YP_001097604.1| - 0.1 12.7 0.2 0.1 12.7 0.2 2.9 3 1 0 3 3 3 0 Thiamine pyrophosphokinase C terminal E1-E2_ATPase PF00122.20 gi|134046119|ref|YP_001097605.1| - 4.3e-47 160.0 6.5 1e-46 158.8 0.2 3.2 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|134046119|ref|YP_001097605.1| - 6.5e-30 104.2 8.8 6.5e-30 104.2 8.8 2.8 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|134046119|ref|YP_001097605.1| - 3.2e-24 86.4 0.1 9.5e-24 84.8 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|134046119|ref|YP_001097605.1| - 7.3e-10 38.4 0.0 2.3e-09 36.8 0.0 1.9 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|134046119|ref|YP_001097605.1| - 2.3e-05 24.4 0.0 6.2e-05 23.0 0.0 1.8 1 1 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|134046119|ref|YP_001097605.1| - 0.0031 17.3 10.0 0.0034 17.2 0.6 3.0 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|134046119|ref|YP_001097605.1| - 0.0099 16.3 0.0 0.019 15.4 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF3034 PF11231.8 gi|134046119|ref|YP_001097605.1| - 0.071 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3034) DUF2809 PF10990.8 gi|134046119|ref|YP_001097605.1| - 0.077 13.7 0.2 0.077 13.7 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2809) SAND PF01342.21 gi|134046119|ref|YP_001097605.1| - 0.11 12.2 0.5 6.3 6.6 0.1 2.4 2 0 0 2 2 2 0 SAND domain TssN PF17555.2 gi|134046120|ref|YP_001097606.1| - 0.41 10.0 14.1 0.53 9.6 14.1 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN Lactamase_B PF00753.27 gi|134046122|ref|YP_001097608.1| - 5.4e-17 62.4 0.0 5.2e-12 46.2 0.0 2.0 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|134046122|ref|YP_001097608.1| - 0.0004 19.9 0.0 0.00051 19.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|134046122|ref|YP_001097608.1| - 0.0024 17.8 0.3 0.0032 17.4 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF1189 PF06691.11 gi|134046122|ref|YP_001097608.1| - 0.0058 16.2 6.8 0.009 15.6 6.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1189) Lip_prot_lig_C PF10437.9 gi|134046122|ref|YP_001097608.1| - 0.015 15.3 0.4 0.41 10.7 0.5 2.3 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus DNA_pol3_theta PF06440.11 gi|134046122|ref|YP_001097608.1| - 0.018 14.7 0.0 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III, theta subunit QRPTase_C PF01729.19 gi|134046123|ref|YP_001097609.1| - 9e-32 110.2 0.5 1.4e-31 109.5 0.5 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|134046123|ref|YP_001097609.1| - 3.1e-18 65.6 0.0 9e-18 64.1 0.0 1.8 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain TMP-TENI PF02581.17 gi|134046123|ref|YP_001097609.1| - 0.00042 19.7 0.2 0.0012 18.3 0.2 1.8 1 1 0 1 1 1 1 Thiamine monophosphate synthase Ribul_P_3_epim PF00834.19 gi|134046123|ref|YP_001097609.1| - 0.0021 17.5 0.3 0.0044 16.4 0.3 1.7 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family AcetDehyd-dimer PF09290.11 gi|134046123|ref|YP_001097609.1| - 0.095 12.9 1.0 0.25 11.5 0.3 2.0 2 0 0 2 2 2 0 Prokaryotic acetaldehyde dehydrogenase, dimerisation Glycos_transf_2 PF00535.26 gi|134046123|ref|YP_001097609.1| - 0.27 11.0 1.4 33 4.2 0.0 3.1 2 2 0 2 2 2 0 Glycosyl transferase family 2 BPD_transp_1 PF00528.22 gi|134046124|ref|YP_001097610.1| - 3.8e-21 75.7 14.3 5.1e-21 75.2 14.3 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF983 PF06170.12 gi|134046124|ref|YP_001097610.1| - 8 7.0 9.5 0.67 10.4 1.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF983) SBP_bac_11 PF13531.6 gi|134046125|ref|YP_001097611.1| - 4.1e-58 196.9 0.1 4.6e-58 196.7 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|134046125|ref|YP_001097611.1| - 4.2e-21 76.2 0.8 7e-10 39.3 0.1 2.1 1 1 1 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 gi|134046125|ref|YP_001097611.1| - 8e-07 29.0 2.6 2.6e-06 27.3 0.5 2.3 2 1 1 3 3 3 1 PBP superfamily domain SBP_bac_8 PF13416.6 gi|134046125|ref|YP_001097611.1| - 3.2e-05 23.9 0.8 0.017 14.9 0.1 2.1 1 1 1 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|134046125|ref|YP_001097611.1| - 5.3e-05 22.8 0.0 9.3e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|134046125|ref|YP_001097611.1| - 0.0011 18.6 0.5 0.003 17.2 0.5 1.7 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like PF12727.7 gi|134046125|ref|YP_001097611.1| - 0.0013 17.9 0.1 0.0027 16.9 0.1 1.6 1 1 0 1 1 1 1 PBP superfamily domain OpuAC PF04069.12 gi|134046125|ref|YP_001097611.1| - 0.0038 16.8 0.7 0.0084 15.7 0.7 1.7 1 1 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system DUF505 PF04458.12 gi|134046125|ref|YP_001097611.1| - 0.0049 15.3 0.1 0.0058 15.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) LysR_substrate PF03466.20 gi|134046125|ref|YP_001097611.1| - 0.0078 15.6 0.0 0.036 13.4 0.0 2.3 1 1 0 1 1 1 1 LysR substrate binding domain Rhomboid_N PF12122.8 gi|134046125|ref|YP_001097611.1| - 0.19 11.9 0.0 0.43 10.8 0.0 1.5 1 0 0 1 1 1 0 Cytoplasmic N-terminal domain of rhomboid serine protease Cauli_VI PF01693.16 gi|134046128|ref|YP_001097614.1| - 7.7e-19 67.7 1.3 7.7e-19 67.7 1.3 2.1 2 0 0 2 2 2 1 Caulimovirus viroplasmin RNase_H PF00075.24 gi|134046128|ref|YP_001097614.1| - 7.5e-12 45.6 0.3 1.3e-11 44.9 0.3 1.4 1 0 0 1 1 1 1 RNase H RVT_3 PF13456.6 gi|134046128|ref|YP_001097614.1| - 1.2e-05 25.1 0.1 1.8e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like DUF3139 PF11337.8 gi|134046128|ref|YP_001097614.1| - 0.032 14.9 0.3 0.032 14.9 0.3 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3139) DUF45 PF01863.17 gi|134046129|ref|YP_001097615.1| - 2e-61 207.7 1.9 2.2e-61 207.5 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|134046129|ref|YP_001097615.1| - 5.1e-06 26.7 0.6 8.4e-06 26.0 0.4 1.4 1 1 0 1 1 1 1 WLM domain SprT-like PF10263.9 gi|134046129|ref|YP_001097615.1| - 3.5e-05 23.6 0.0 7.6e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 SprT-like family TetR_N PF00440.23 gi|134046131|ref|YP_001097617.1| - 2.3e-15 56.1 0.1 4.2e-15 55.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family DUF2018 PF09442.10 gi|134046131|ref|YP_001097617.1| - 0.047 14.7 0.1 16 6.5 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF2018) HTH_24 PF13412.6 gi|134046131|ref|YP_001097617.1| - 0.052 13.1 0.0 0.18 11.4 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding UPF0122 PF04297.14 gi|134046131|ref|YP_001097617.1| - 0.071 13.4 0.6 0.14 12.4 0.1 1.9 2 1 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_Tnp_1_2 PF13022.6 gi|134046131|ref|YP_001097617.1| - 0.077 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Flp1_like PF16982.5 gi|134046132|ref|YP_001097618.1| - 0.2 11.0 2.5 0.18 11.2 0.6 2.0 2 0 0 2 2 2 0 Putative Flagellin, Flp1-like, domain RRM_4 PF10598.9 gi|134046133|ref|YP_001097619.1| - 0.044 14.1 0.2 0.052 13.9 0.2 1.2 1 0 0 1 1 1 0 RNA recognition motif of the spliceosomal PrP8 BaxI_1 PF12811.7 gi|134046134|ref|YP_001097620.1| - 2e-77 259.9 15.0 2.4e-77 259.6 15.0 1.1 1 0 0 1 1 1 1 Bax inhibitor 1 like Bax1-I PF01027.20 gi|134046134|ref|YP_001097620.1| - 6.4e-10 39.2 27.6 8.5e-10 38.8 27.6 1.2 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 TrbE PF11100.8 gi|134046134|ref|YP_001097620.1| - 0.62 10.3 17.1 4.5 7.6 0.3 4.3 4 0 0 4 4 4 0 Conjugal transfer protein TrbE DUF2964 PF11177.8 gi|134046134|ref|YP_001097620.1| - 4.5 7.5 9.1 37 4.6 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) EII-Sor PF03609.14 gi|134046135|ref|YP_001097621.1| - 0.25 10.7 3.4 0.25 10.7 2.7 1.3 1 1 0 1 1 1 0 PTS system sorbose-specific iic component PMSR PF01625.21 gi|134046138|ref|YP_001097623.1| - 5e-60 202.1 0.2 5.6e-60 202.0 0.2 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase LysE PF01810.18 gi|134046139|ref|YP_001097624.1| - 7.3e-32 110.4 14.4 8.8e-32 110.1 14.4 1.1 1 0 0 1 1 1 1 LysE type translocator PEMT PF04191.13 gi|134046139|ref|YP_001097624.1| - 0.12 12.7 7.7 0.15 12.5 3.3 2.8 1 1 2 3 3 3 0 Phospholipid methyltransferase Phage_holin_3_3 PF16083.5 gi|134046139|ref|YP_001097624.1| - 1.3 9.2 9.5 0.079 13.1 1.4 2.5 2 1 0 2 2 2 0 LydA holin phage, holin superfamily III Phage_holin_3_6 PF07332.11 gi|134046139|ref|YP_001097624.1| - 3.2 7.8 12.3 0.82 9.7 2.6 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III 2TM PF13239.6 gi|134046139|ref|YP_001097624.1| - 5.4 7.4 8.2 10 6.5 0.9 2.5 2 1 0 2 2 2 0 2TM domain AA_permease_2 PF13520.6 gi|134046140|ref|YP_001097625.1| - 2.5e-18 66.1 57.2 3.8e-18 65.6 57.2 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|134046140|ref|YP_001097625.1| - 1.8e-08 33.4 50.5 8.7e-08 31.2 50.5 2.0 1 1 0 1 1 1 1 Amino acid permease DUF2231 PF09990.9 gi|134046140|ref|YP_001097625.1| - 0.026 15.0 1.6 0.026 15.0 1.6 3.2 3 1 0 3 3 3 0 Predicted membrane protein (DUF2231) DUF553 PF04473.12 gi|134046141|ref|YP_001097626.1| - 0.00025 20.6 0.3 0.00067 19.2 0.3 1.8 1 0 0 1 1 1 1 Transglutaminase-like domain DUF3324 PF11797.8 gi|134046141|ref|YP_001097626.1| - 0.0042 17.0 0.3 0.013 15.5 0.3 1.8 1 0 0 1 1 1 1 Protein of unknown function C-terminal (DUF3324) DUF5006 PF16397.5 gi|134046141|ref|YP_001097626.1| - 0.01 15.1 0.0 0.023 13.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5006) LPAM_1 PF08139.12 gi|134046141|ref|YP_001097626.1| - 0.33 11.5 3.0 0.95 10.1 3.0 1.8 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site ECF_trnsprt PF12822.7 gi|134046143|ref|YP_001097628.1| - 3.6e-10 40.2 29.3 4.5e-10 39.9 29.3 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component 5TM-5TMR_LYT PF07694.12 gi|134046143|ref|YP_001097628.1| - 0.0005 19.6 23.4 0.00056 19.5 21.7 1.8 1 1 1 2 2 2 1 5TMR of 5TMR-LYT CbiM PF01891.16 gi|134046143|ref|YP_001097628.1| - 0.0055 16.6 13.9 0.0082 16.0 13.9 1.3 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region BshC PF10079.9 gi|134046144|ref|YP_001097629.1| - 0.06 12.1 0.6 0.07 11.9 0.6 1.0 1 0 0 1 1 1 0 Bacillithiol biosynthesis BshC OppC_N PF12911.7 gi|134046144|ref|YP_001097629.1| - 7 6.7 10.1 49 4.0 10.1 2.0 1 1 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Herpes_US9 PF06072.11 gi|134046145|ref|YP_001097630.1| - 0.075 12.9 0.3 0.17 11.8 0.3 1.6 1 0 0 1 1 1 0 Alphaherpesvirus tegument protein US9 Glycos_transf_4 PF00953.21 gi|134046145|ref|YP_001097630.1| - 0.34 10.9 4.7 0.45 10.5 4.7 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 4 PTS_EIIC PF02378.18 gi|134046145|ref|YP_001097630.1| - 2.1 7.3 6.3 2.6 7.0 6.3 1.2 1 0 0 1 1 1 0 Phosphotransferase system, EIIC DctQ PF04290.12 gi|134046146|ref|YP_001097631.1| - 0.24 11.3 5.2 0.22 11.5 4.2 1.4 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF4133 PF13571.6 gi|134046146|ref|YP_001097631.1| - 5.1 7.5 6.8 32 4.9 6.9 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4133) VIT1 PF01988.19 gi|134046147|ref|YP_001097632.1| - 0.44 10.4 2.2 0.75 9.6 2.2 1.4 1 0 0 1 1 1 0 VIT family SecE PF00584.20 gi|134046147|ref|YP_001097632.1| - 4.5 7.3 13.3 2.5 8.1 0.9 2.4 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex DUF2975 PF11188.8 gi|134046147|ref|YP_001097632.1| - 6.5 6.6 10.4 6 6.8 0.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) DUF2540 PF10802.8 gi|134046148|ref|YP_001097633.1| - 1.5e-12 47.4 0.2 1.8e-12 47.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2540) MCM PF00493.23 gi|134046149|ref|YP_001097634.1| - 1.5e-70 236.8 0.0 2.2e-70 236.3 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_lid PF17855.1 gi|134046149|ref|YP_001097634.1| - 1.6e-24 86.2 0.6 3.9e-24 84.9 0.6 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_OB PF17207.3 gi|134046149|ref|YP_001097634.1| - 2.3e-17 63.0 0.2 4.7e-17 62.0 0.2 1.5 1 0 0 1 1 1 1 MCM OB domain Mg_chelatase PF01078.21 gi|134046149|ref|YP_001097634.1| - 5.8e-08 32.4 0.0 2.1e-06 27.3 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|134046149|ref|YP_001097634.1| - 7.2e-06 26.0 0.0 1.5e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|134046149|ref|YP_001097634.1| - 0.046 13.4 0.0 2.6 7.7 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain MCM_N PF14551.6 gi|134046149|ref|YP_001097634.1| - 0.076 13.6 1.2 0.25 11.9 0.2 2.3 2 0 0 2 2 2 0 MCM N-terminal domain UPF0167 PF03691.14 gi|134046149|ref|YP_001097634.1| - 0.087 12.6 0.5 0.19 11.5 0.2 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0167) HypA PF01155.19 gi|134046149|ref|YP_001097634.1| - 0.098 12.7 0.2 0.4 10.7 0.2 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|134046149|ref|YP_001097634.1| - 0.14 12.3 0.7 0.37 10.9 0.7 1.8 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|134046149|ref|YP_001097634.1| - 0.19 11.5 0.2 8.4 6.2 0.1 2.4 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF2080 PF09853.9 gi|134046151|ref|YP_001097636.1| - 1.3e-22 79.3 0.0 1.6e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) ARS2 PF04959.13 gi|134046152|ref|YP_001097637.1| - 0.11 12.9 3.3 0.21 12.0 3.3 1.4 1 0 0 1 1 1 0 Arsenite-resistance protein 2 BssS PF13991.6 gi|134046152|ref|YP_001097637.1| - 0.21 11.7 1.1 0.31 11.1 0.1 1.9 2 0 0 2 2 2 0 BssS protein family Csm1_N PF18504.1 gi|134046152|ref|YP_001097637.1| - 5.1 7.5 11.3 1.5 9.2 5.3 2.8 2 1 1 3 3 3 0 Csm1 N-terminal domain HxlR PF01638.17 gi|134046154|ref|YP_001097639.1| - 5.8e-07 29.3 0.1 6.3e-07 29.2 0.1 1.2 1 1 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|134046154|ref|YP_001097639.1| - 6e-06 26.1 1.0 1e-05 25.4 0.3 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|134046154|ref|YP_001097639.1| - 0.00023 21.0 0.4 0.00081 19.2 0.2 2.1 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|134046154|ref|YP_001097639.1| - 0.00063 19.6 0.0 0.0043 16.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|134046154|ref|YP_001097639.1| - 0.0053 16.7 0.1 6.2 6.8 0.0 3.0 2 1 1 3 3 3 1 MarR family TFIIE_alpha PF02002.17 gi|134046154|ref|YP_001097639.1| - 0.0098 15.7 0.6 0.017 15.0 0.6 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_45 PF14947.6 gi|134046154|ref|YP_001097639.1| - 0.018 15.0 1.0 0.093 12.7 1.0 2.1 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|134046154|ref|YP_001097639.1| - 0.022 14.7 0.1 0.082 12.9 0.0 1.9 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain DUF2806 PF10987.8 gi|134046154|ref|YP_001097639.1| - 0.029 14.2 0.1 0.23 11.3 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2806) Replic_Relax PF13814.6 gi|134046154|ref|YP_001097639.1| - 0.03 14.4 0.0 0.036 14.1 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_36 PF13730.6 gi|134046154|ref|YP_001097639.1| - 0.033 14.1 0.1 2.6 8.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|134046154|ref|YP_001097639.1| - 0.048 13.8 5.4 1.9 8.6 5.4 2.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) RQC PF09382.10 gi|134046154|ref|YP_001097639.1| - 0.05 13.4 0.1 0.057 13.2 0.1 1.3 1 0 0 1 1 1 0 RQC domain W2 PF02020.18 gi|134046154|ref|YP_001097639.1| - 0.066 13.4 0.1 0.15 12.2 0.1 1.7 1 1 0 1 1 1 0 eIF4-gamma/eIF5/eIF2-epsilon CtsR_C PF17727.1 gi|134046154|ref|YP_001097639.1| - 0.067 13.3 2.3 0.074 13.2 0.2 2.1 3 0 0 3 3 3 0 CtsR C-terminal dimerization domain MarR_2 PF12802.7 gi|134046154|ref|YP_001097639.1| - 0.11 12.4 0.0 0.4 10.6 0.0 1.8 2 1 0 2 2 2 0 MarR family Mnd1 PF03962.15 gi|134046154|ref|YP_001097639.1| - 0.15 12.3 1.7 4.6 7.6 0.0 2.7 3 0 0 3 3 3 0 Mnd1 HTH domain DUF2254 PF10011.9 gi|134046155|ref|YP_001097640.1| - 6.1e-05 22.0 5.9 0.00011 21.2 5.9 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) TMEM107 PF14995.6 gi|134046155|ref|YP_001097640.1| - 0.023 15.1 0.2 0.023 15.1 0.2 2.5 1 1 0 2 2 2 0 Transmembrane protein Cloacin_immun PF03513.14 gi|134046157|ref|YP_001097642.1| - 0.073 13.4 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Cloacin immunity protein HTH_40 PF14493.6 gi|134046160|ref|YP_001097645.1| - 0.083 13.4 2.7 0.27 11.7 0.1 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain Mrr_cat PF04471.12 gi|134046161|ref|YP_001097646.1| - 1.5e-25 89.4 0.0 2.9e-25 88.5 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease DUF2180 PF09947.9 gi|134046161|ref|YP_001097646.1| - 0.07 13.1 1.6 0.19 11.7 1.6 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2180) zf-RING_5 PF14634.6 gi|134046161|ref|YP_001097646.1| - 0.11 12.4 2.7 0.66 10.0 1.9 2.3 2 0 0 2 2 2 0 zinc-RING finger domain zf-AN1 PF01428.16 gi|134046161|ref|YP_001097646.1| - 0.12 12.6 2.1 0.29 11.3 2.1 1.6 1 0 0 1 1 1 0 AN1-like Zinc finger DZR PF12773.7 gi|134046161|ref|YP_001097646.1| - 0.36 10.9 2.5 0.75 9.9 2.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|134046161|ref|YP_001097646.1| - 0.39 10.7 2.5 0.48 10.5 0.7 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prok-RING_4 PF14447.6 gi|134046161|ref|YP_001097646.1| - 1.8 8.5 4.8 2 8.3 2.4 2.2 2 1 0 2 2 2 0 Prokaryotic RING finger family 4 zf-C2HC5 PF06221.13 gi|134046161|ref|YP_001097646.1| - 2.8 8.0 5.5 1.5 8.9 1.0 2.3 1 1 0 2 2 2 0 Putative zinc finger motif, C2HC5-type Fib_alpha PF08702.10 gi|134046162|ref|YP_001097647.1| - 0.012 15.8 4.7 0.012 15.8 4.7 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family APG6_N PF17675.1 gi|134046162|ref|YP_001097647.1| - 0.015 15.8 9.2 0.015 15.8 9.2 2.2 1 1 0 2 2 2 0 Apg6 coiled-coil region NPV_P10 PF05531.12 gi|134046162|ref|YP_001097647.1| - 0.016 15.7 3.9 0.95 10.0 0.1 3.2 1 1 2 3 3 2 0 Nucleopolyhedrovirus P10 protein HBM PF16591.5 gi|134046162|ref|YP_001097647.1| - 0.032 13.6 0.9 0.046 13.2 0.5 1.4 1 1 0 1 1 1 0 Helical bimodular sensor domain DUF1908 PF08926.11 gi|134046162|ref|YP_001097647.1| - 0.047 12.8 1.1 0.078 12.1 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1908) TrmB PF01978.19 gi|134046162|ref|YP_001097647.1| - 0.052 13.4 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MutS_III PF05192.18 gi|134046162|ref|YP_001097647.1| - 0.09 13.0 6.5 0.19 11.9 0.1 2.2 1 1 1 2 2 2 0 MutS domain III DFF-C PF09033.10 gi|134046162|ref|YP_001097647.1| - 0.1 12.5 3.7 0.1 12.5 2.4 1.7 1 1 1 2 2 2 0 DNA Fragmentation factor 45kDa, C terminal domain Fzo_mitofusin PF04799.13 gi|134046162|ref|YP_001097647.1| - 0.14 11.7 9.9 0.095 12.2 4.5 2.7 1 1 0 2 2 2 0 fzo-like conserved region HigB-like_toxin PF05015.13 gi|134046162|ref|YP_001097647.1| - 0.24 11.8 6.8 0.43 11.0 6.1 1.8 1 1 0 1 1 1 0 RelE-like toxin of type II toxin-antitoxin system HigB XhlA PF10779.9 gi|134046162|ref|YP_001097647.1| - 0.34 11.1 0.1 0.34 11.1 0.1 3.9 2 1 3 5 5 4 0 Haemolysin XhlA TK PF00265.18 gi|134046162|ref|YP_001097647.1| - 0.81 9.5 6.6 0.14 12.0 2.6 1.7 2 0 0 2 2 2 0 Thymidine kinase Cortex-I_coil PF09304.10 gi|134046162|ref|YP_001097647.1| - 0.87 9.8 18.1 0.16 12.2 8.7 2.5 2 0 0 2 2 2 0 Cortexillin I, coiled coil KxDL PF10241.9 gi|134046162|ref|YP_001097647.1| - 1.1 9.6 12.9 5.6 7.3 0.2 3.7 2 1 1 3 3 3 0 Uncharacterized conserved protein Mod_r PF07200.13 gi|134046162|ref|YP_001097647.1| - 1.3 9.1 15.2 3.2 7.8 11.6 2.7 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein HemX PF04375.14 gi|134046162|ref|YP_001097647.1| - 1.9 7.7 8.9 1.2 8.4 2.3 2.4 1 1 2 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase PCRF PF03462.18 gi|134046162|ref|YP_001097647.1| - 2.7 7.8 12.4 1.1 9.1 6.1 2.1 1 1 1 2 2 2 0 PCRF domain DHR10 PF18595.1 gi|134046162|ref|YP_001097647.1| - 2.9 8.0 13.5 0.44 10.6 8.0 2.3 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain DUF1664 PF07889.12 gi|134046162|ref|YP_001097647.1| - 3 7.9 10.1 14 5.8 0.4 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|134046162|ref|YP_001097647.1| - 4.2 7.4 14.0 1 9.4 7.1 2.7 1 1 2 3 3 3 0 Laminin Domain II DASH_Dad4 PF08650.10 gi|134046162|ref|YP_001097647.1| - 5.5 7.0 13.7 19 5.3 8.5 3.5 1 1 2 3 3 3 0 DASH complex subunit Dad4 BRI3BP PF14965.6 gi|134046162|ref|YP_001097647.1| - 6 6.4 6.3 0.41 10.1 0.6 1.9 3 0 0 3 3 3 0 Negative regulator of p53/TP53 BLOC1_2 PF10046.9 gi|134046162|ref|YP_001097647.1| - 7 7.0 19.9 1.6 9.1 9.9 3.4 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 RNase_3_N PF18497.1 gi|134046163|ref|YP_001097648.1| - 0.017 15.3 0.3 3.3 8.0 0.2 2.2 1 1 1 2 2 2 0 Ribonuclease III N-terminal domain Atg14 PF10186.9 gi|134046163|ref|YP_001097648.1| - 0.019 14.1 3.5 0.023 13.8 3.5 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2811 PF10929.8 gi|134046163|ref|YP_001097648.1| - 0.03 14.6 0.0 0.048 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2811) IBV_3C PF03620.13 gi|134046163|ref|YP_001097648.1| - 0.082 13.4 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 IBV 3C protein AAA_14 PF13173.6 gi|134046164|ref|YP_001097649.1| - 2.7e-33 114.8 2.9 3e-33 114.6 0.8 2.2 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.6 gi|134046164|ref|YP_001097649.1| - 1.9e-10 41.0 0.3 4.4e-10 39.8 0.3 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_16 PF13191.6 gi|134046164|ref|YP_001097649.1| - 0.1 13.0 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain IL7 PF01415.16 gi|134046164|ref|YP_001097649.1| - 0.13 12.3 1.0 0.33 11.0 0.2 2.0 2 0 0 2 2 2 0 Interleukin 7/9 family MacB_PCD PF12704.7 gi|134046165|ref|YP_001097650.1| - 1.2e-29 104.1 0.1 1.2e-29 104.1 0.1 1.8 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|134046165|ref|YP_001097650.1| - 6.6e-14 52.2 16.2 1.4e-13 51.1 5.3 3.2 3 0 0 3 3 3 2 FtsX-like permease family DUF4064 PF13273.6 gi|134046165|ref|YP_001097650.1| - 0.22 11.8 20.4 2.5 8.4 0.2 3.8 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) Pyridox_ox_2 PF12900.7 gi|134046167|ref|YP_001097652.1| - 1.9e-20 73.3 0.0 2.3e-20 73.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|134046167|ref|YP_001097652.1| - 3.4e-05 24.0 0.0 5.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|134046167|ref|YP_001097652.1| - 0.035 13.7 0.2 0.052 13.1 0.1 1.3 1 1 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like MarR PF01047.22 gi|134046168|ref|YP_001097653.1| - 9.8e-09 35.0 0.0 2.5e-08 33.7 0.0 1.7 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|134046168|ref|YP_001097653.1| - 1.3e-07 31.4 0.0 2.3e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|134046168|ref|YP_001097653.1| - 7e-07 28.7 0.0 1.7e-06 27.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.12 gi|134046168|ref|YP_001097653.1| - 5.6e-05 23.2 0.0 0.00011 22.2 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|134046168|ref|YP_001097653.1| - 0.00014 21.7 0.0 0.00029 20.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|134046168|ref|YP_001097653.1| - 0.0002 21.5 0.0 0.00051 20.2 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|134046168|ref|YP_001097653.1| - 0.0011 19.4 0.0 0.0022 18.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|134046168|ref|YP_001097653.1| - 0.0033 17.3 0.0 0.0056 16.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|134046168|ref|YP_001097653.1| - 0.0077 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|134046168|ref|YP_001097653.1| - 0.0096 15.9 0.0 0.028 14.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix Penicillinase_R PF03965.16 gi|134046168|ref|YP_001097653.1| - 0.012 16.0 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_36 PF13730.6 gi|134046168|ref|YP_001097653.1| - 0.015 15.3 0.0 0.073 13.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|134046168|ref|YP_001097653.1| - 0.025 14.5 0.0 0.071 13.1 0.0 1.7 2 0 0 2 2 2 0 HTH domain HTH_23 PF13384.6 gi|134046168|ref|YP_001097653.1| - 0.035 13.9 0.0 0.076 12.8 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|134046168|ref|YP_001097653.1| - 0.12 12.4 0.0 0.31 11.1 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|134046168|ref|YP_001097653.1| - 0.12 12.4 0.0 0.3 11.2 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|134046168|ref|YP_001097653.1| - 0.15 12.1 0.0 0.33 11.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix FMN_red PF03358.15 gi|134046169|ref|YP_001097654.1| - 3.9e-22 78.7 0.0 5.2e-22 78.2 0.0 1.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|134046169|ref|YP_001097654.1| - 3.5e-13 49.7 0.0 4.6e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|134046169|ref|YP_001097654.1| - 0.014 15.7 0.0 0.18 12.1 0.0 2.1 2 0 0 2 2 2 0 Flavodoxin domain Nitroreductase PF00881.24 gi|134046170|ref|YP_001097655.1| - 4.3e-24 85.5 0.1 2e-13 50.8 0.0 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|134046170|ref|YP_001097655.1| - 4.1e-13 49.4 0.8 9.1e-07 28.7 0.2 3.3 1 1 1 3 3 3 3 Putative TM nitroreductase FMN_red PF03358.15 gi|134046171|ref|YP_001097656.1| - 1.2e-29 103.1 0.0 1.5e-29 102.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|134046171|ref|YP_001097656.1| - 1.1e-10 41.6 0.0 1.2e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|134046171|ref|YP_001097656.1| - 0.12 12.7 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin domain DUF5603 PF18231.1 gi|134046171|ref|YP_001097656.1| - 0.14 12.5 1.9 0.19 12.0 1.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5603) HxlR PF01638.17 gi|134046172|ref|YP_001097657.1| - 5.3e-36 122.4 0.4 6.3e-36 122.1 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|134046172|ref|YP_001097657.1| - 0.012 15.6 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_12 PF08461.10 gi|134046172|ref|YP_001097657.1| - 0.014 15.3 0.0 0.093 12.7 0.0 2.3 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|134046172|ref|YP_001097657.1| - 0.032 14.1 0.0 0.059 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|134046172|ref|YP_001097657.1| - 0.037 13.6 0.0 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|134046172|ref|YP_001097657.1| - 0.049 13.8 0.0 0.069 13.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|134046172|ref|YP_001097657.1| - 0.099 12.6 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.7 gi|134046172|ref|YP_001097657.1| - 0.11 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|134046173|ref|YP_001097658.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain Na_H_Exchanger PF00999.21 gi|134046174|ref|YP_001097659.1| - 1.6e-55 188.4 56.5 2.3e-55 188.0 56.5 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|134046174|ref|YP_001097659.1| - 5.2e-21 75.1 0.4 9.7e-21 74.2 0.4 1.5 1 0 0 1 1 1 1 TrkA-N domain HTH_5 PF01022.20 gi|134046175|ref|YP_001097660.1| - 4.7e-08 32.8 0.3 1e-07 31.7 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|134046175|ref|YP_001097660.1| - 0.00018 21.5 0.0 0.00036 20.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|134046175|ref|YP_001097660.1| - 0.00057 19.8 0.6 0.003 17.5 0.6 2.3 1 1 0 1 1 1 1 Winged helix-turn-helix Rio2_N PF09202.11 gi|134046175|ref|YP_001097660.1| - 0.0016 18.6 0.5 0.097 12.9 0.0 2.4 2 0 0 2 2 2 1 Rio2, N-terminal HTH_34 PF13601.6 gi|134046175|ref|YP_001097660.1| - 0.0038 17.4 0.1 0.011 15.9 0.1 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|134046175|ref|YP_001097660.1| - 0.0051 16.3 0.5 0.015 14.8 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HxlR PF01638.17 gi|134046175|ref|YP_001097660.1| - 0.01 15.6 0.1 0.031 14.1 0.0 1.9 2 0 0 2 2 2 0 HxlR-like helix-turn-helix DUF5043 PF16446.5 gi|134046175|ref|YP_001097660.1| - 0.023 14.7 2.1 0.051 13.6 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5043) Fungal_lectin_2 PF18647.1 gi|134046175|ref|YP_001097660.1| - 0.29 11.6 2.1 0.59 10.6 2.1 1.5 1 0 0 1 1 1 0 Alpha-galactosyl-binding fungal lectin PI3K_P85_iSH2 PF16454.5 gi|134046175|ref|YP_001097660.1| - 7.3 6.2 12.3 1.8 8.1 2.4 2.9 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF2115 PF09888.9 gi|134046177|ref|YP_001097662.1| - 2.3e-36 125.8 3.3 2.6e-36 125.6 3.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) FMN_red PF03358.15 gi|134046178|ref|YP_001097663.1| - 3.5e-25 88.5 0.0 4.4e-25 88.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|134046178|ref|YP_001097663.1| - 1.2e-09 38.2 0.0 1.4e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Streptin-Immun PF11083.8 gi|134046178|ref|YP_001097663.1| - 0.0063 16.9 0.7 0.03 14.7 0.2 2.0 2 0 0 2 2 2 1 Lantibiotic streptin immunity protein MarR PF01047.22 gi|134046179|ref|YP_001097664.1| - 6.5e-15 54.8 0.2 1.3e-13 50.6 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|134046179|ref|YP_001097664.1| - 9.8e-11 42.0 0.1 1.5e-10 41.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|134046179|ref|YP_001097664.1| - 2.9e-08 33.5 0.0 5.2e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|134046179|ref|YP_001097664.1| - 8.3e-08 32.3 0.4 1.4e-07 31.6 0.4 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|134046179|ref|YP_001097664.1| - 7.4e-06 25.4 0.0 1.4e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|134046179|ref|YP_001097664.1| - 4.8e-05 23.5 1.4 0.00012 22.3 1.4 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|134046179|ref|YP_001097664.1| - 0.00037 20.2 0.0 0.00094 18.9 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain TrmB PF01978.19 gi|134046179|ref|YP_001097664.1| - 0.00042 20.1 0.1 0.00073 19.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Toxin_10 PF05431.11 gi|134046179|ref|YP_001097664.1| - 0.0087 15.6 0.1 0.011 15.2 0.1 1.1 1 0 0 1 1 1 1 Insecticidal Crystal Toxin, P42 CmlA_N PF18456.1 gi|134046179|ref|YP_001097664.1| - 0.014 14.7 0.3 0.54 9.5 0.0 2.0 2 0 0 2 2 2 0 Diiron non-heme beta-hydroxylase N-terminal domain HTH_11 PF08279.12 gi|134046179|ref|YP_001097664.1| - 0.024 14.6 0.0 0.069 13.1 0.0 1.8 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|134046179|ref|YP_001097664.1| - 0.037 13.8 0.0 0.059 13.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|134046179|ref|YP_001097664.1| - 0.046 14.1 0.1 0.099 13.0 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator HxlR PF01638.17 gi|134046179|ref|YP_001097664.1| - 0.049 13.5 0.3 0.11 12.4 0.1 1.7 2 0 0 2 2 2 0 HxlR-like helix-turn-helix Ribosomal_S8 PF00410.19 gi|134046179|ref|YP_001097664.1| - 0.06 13.3 0.5 0.07 13.1 0.5 1.3 1 0 0 1 1 1 0 Ribosomal protein S8 ATP-grasp_4 PF13535.6 gi|134046179|ref|YP_001097664.1| - 0.07 12.7 0.3 0.21 11.2 0.2 1.8 1 1 1 2 2 2 0 ATP-grasp domain FeoC PF09012.10 gi|134046179|ref|YP_001097664.1| - 0.074 13.1 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF3116 PF11313.8 gi|134046179|ref|YP_001097664.1| - 0.075 12.9 2.0 0.51 10.2 1.9 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) LMWPc PF01451.21 gi|134046180|ref|YP_001097665.1| - 1.9e-15 57.5 0.1 3.9e-15 56.5 0.1 1.5 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Ssu72 PF04722.13 gi|134046180|ref|YP_001097665.1| - 0.051 13.1 0.4 0.59 9.7 0.1 2.1 1 1 1 2 2 2 0 Ssu72-like protein SBF PF01758.16 gi|134046181|ref|YP_001097666.1| - 2e-44 151.6 16.3 2e-44 151.6 16.3 1.7 2 0 0 2 2 2 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|134046181|ref|YP_001097666.1| - 2.5e-08 33.6 23.1 6e-08 32.4 23.1 1.6 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) DUF2897 PF11446.8 gi|134046181|ref|YP_001097666.1| - 2 8.4 6.8 6.5 6.7 1.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2897) DUF2683 PF10884.8 gi|134046182|ref|YP_001097667.1| - 0.00011 22.4 1.3 0.00048 20.3 1.3 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2683) Lipocalin PF00061.23 gi|134046182|ref|YP_001097667.1| - 0.016 15.4 0.4 1 9.6 0.1 2.1 1 1 1 2 2 2 0 Lipocalin / cytosolic fatty-acid binding protein family DUF5039 PF16442.5 gi|134046182|ref|YP_001097667.1| - 0.043 13.4 0.1 0.048 13.2 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5039) Na_Ca_ex PF01699.24 gi|134046183|ref|YP_001097668.1| - 2.3e-47 160.7 36.4 9e-26 90.6 16.4 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Ac110_PIF PF07280.11 gi|134046183|ref|YP_001097668.1| - 1.6 8.6 10.0 1.2 8.9 0.1 3.4 3 0 0 3 3 3 0 Per os infectivity factor AC110 PIRT PF15099.6 gi|134046183|ref|YP_001097668.1| - 3.2 7.3 6.7 0.77 9.3 0.9 2.5 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family WYL PF13280.6 gi|134046184|ref|YP_001097669.1| - 1.5e-05 25.1 0.0 1.7e-05 24.9 0.0 1.0 1 0 0 1 1 1 1 WYL domain FokI_C PF02980.16 gi|134046185|ref|YP_001097670.1| - 0.057 13.4 0.1 0.086 12.9 0.1 1.3 1 0 0 1 1 1 0 Restriction endonuclease FokI, catalytic domain SNARE_assoc PF09335.11 gi|134046186|ref|YP_001097671.1| - 0.012 16.1 3.2 0.023 15.2 3.0 1.6 1 1 0 1 1 1 0 SNARE associated Golgi protein TMEM40 PF15817.5 gi|134046186|ref|YP_001097671.1| - 2.8 7.7 8.1 2.6 7.8 0.4 2.4 2 1 0 2 2 2 0 Transmembrane protein 40 family RNase_T PF00929.24 gi|134046188|ref|YP_001097673.1| - 3e-11 44.2 0.0 3.5e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Exonuclease RNase_H_2 PF13482.6 gi|134046188|ref|YP_001097673.1| - 0.00096 19.2 0.2 0.0072 16.3 0.2 2.0 1 1 0 1 1 1 1 RNase_H superfamily DUF22 PF01629.16 gi|134046188|ref|YP_001097673.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF22 DUF4351 PF14261.6 gi|134046188|ref|YP_001097673.1| - 0.12 12.5 0.3 0.39 10.8 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4351) DEAD PF00270.29 gi|134046189|ref|YP_001097674.1| - 5.1e-26 91.5 0.0 1.1e-25 90.4 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|134046189|ref|YP_001097674.1| - 9.6e-24 84.0 0.1 2.6e-23 82.6 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|134046189|ref|YP_001097674.1| - 1.2e-14 54.6 0.0 2.8e-13 50.2 0.0 2.9 2 2 1 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|134046189|ref|YP_001097674.1| - 7.2e-07 29.4 0.0 1.5e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HEPN PF05168.14 gi|134046190|ref|YP_001097675.1| - 6.4e-05 23.1 3.5 0.00018 21.6 2.3 2.3 1 1 1 2 2 2 1 HEPN domain HEPN_AbiV PF18728.1 gi|134046190|ref|YP_001097675.1| - 0.0043 17.2 2.2 0.0063 16.7 2.2 1.3 1 1 0 1 1 1 1 AbiV CactinC_cactus PF09732.9 gi|134046190|ref|YP_001097675.1| - 0.025 14.5 0.6 0.037 14.0 0.6 1.2 1 0 0 1 1 1 0 Cactus-binding C-terminus of cactin protein DUF5644 PF18712.1 gi|134046190|ref|YP_001097675.1| - 0.035 14.1 2.7 0.047 13.7 1.2 2.1 2 1 0 2 2 2 0 Family of unknown function (DUF5644) DUF1863 PF08937.11 gi|134046192|ref|YP_001097677.1| - 4.6e-19 69.0 0.0 9.2e-19 68.1 0.0 1.5 1 1 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) Cas_APE2256 PF09651.10 gi|134046194|ref|YP_001097679.1| - 4.5e-05 23.3 1.0 7.7e-05 22.6 0.2 1.8 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_APE2256) Cas_Cas02710 PF09670.10 gi|134046194|ref|YP_001097679.1| - 0.00067 18.6 0.0 0.001 18.0 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) SIR2_2 PF13289.6 gi|134046195|ref|YP_001097680.1| - 1.3e-12 48.0 0.6 3.5e-12 46.6 0.6 1.7 1 0 0 1 1 1 1 SIR2-like domain SIR2 PF02146.17 gi|134046195|ref|YP_001097680.1| - 9.8e-05 22.4 0.0 0.00029 20.8 0.0 2.0 1 1 0 1 1 1 1 Sir2 family N6_Mtase PF02384.16 gi|134046196|ref|YP_001097681.1| - 8.9e-63 212.4 0.0 1.7e-62 211.5 0.0 1.4 1 1 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|134046196|ref|YP_001097681.1| - 3.3e-15 56.9 0.5 3.3e-15 56.9 0.5 2.1 2 0 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|134046196|ref|YP_001097681.1| - 2e-12 47.2 0.0 5e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.11 gi|134046196|ref|YP_001097681.1| - 1.1e-05 25.8 0.0 8.7e-05 23.0 0.0 2.4 3 0 0 3 3 3 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.6 gi|134046196|ref|YP_001097681.1| - 2.5e-05 24.1 0.0 0.089 12.6 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain MTS PF05175.14 gi|134046196|ref|YP_001097681.1| - 0.018 14.6 0.0 0.055 13.0 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase small domain OST_P2 PF18235.1 gi|134046196|ref|YP_001097681.1| - 0.1 12.6 0.1 2.5 8.1 0.0 2.9 3 0 0 3 3 3 0 Oligosaccharyltransferase Peripheral 2 domain Methylase_S PF01420.19 gi|134046197|ref|YP_001097682.1| - 1.2e-44 152.5 12.7 2.3e-37 128.8 3.8 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain ResIII PF04851.15 gi|134046198|ref|YP_001097683.1| - 4.4e-33 114.7 0.1 7.8e-31 107.4 0.0 2.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SWI2_SNF2 PF18766.1 gi|134046198|ref|YP_001097683.1| - 2.5e-17 63.3 0.1 1e-16 61.3 0.0 2.0 2 0 0 2 2 2 1 SWI2/SNF2 ATPase EcoEI_R_C PF08463.10 gi|134046198|ref|YP_001097683.1| - 1.9e-11 44.4 5.6 1.9e-11 44.4 5.6 2.3 2 0 0 2 2 2 1 EcoEI R protein C-terminal Helicase_C PF00271.31 gi|134046198|ref|YP_001097683.1| - 3.7e-08 33.7 0.1 2.8e-07 30.9 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|134046198|ref|YP_001097683.1| - 4.7e-06 26.5 0.1 2.4e-05 24.2 0.0 2.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase HSDR_N PF04313.14 gi|134046198|ref|YP_001097683.1| - 4.4e-05 23.5 0.7 0.0054 16.7 0.7 3.0 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF2075 PF09848.9 gi|134046198|ref|YP_001097683.1| - 0.027 13.7 0.0 0.052 12.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) HSDR_N_2 PF13588.6 gi|134046198|ref|YP_001097683.1| - 0.067 13.2 0.5 0.58 10.2 0.0 2.6 2 0 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) Transglut_core PF01841.19 gi|134046200|ref|YP_001097685.1| - 2.2e-05 24.9 0.2 4.9e-05 23.7 0.2 1.7 1 1 0 1 1 1 1 Transglutaminase-like superfamily DUF4198 PF10670.9 gi|134046200|ref|YP_001097685.1| - 0.0029 18.0 0.0 0.042 14.2 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4198) SpaA PF17802.1 gi|134046200|ref|YP_001097685.1| - 0.049 14.0 1.3 0.62 10.4 0.5 2.4 2 1 0 2 2 2 0 Prealbumin-like fold domain NACHT PF05729.12 gi|134046201|ref|YP_001097686.1| - 1.1e-05 25.4 2.9 0.00022 21.2 0.4 3.3 2 1 0 2 2 2 1 NACHT domain SMC_N PF02463.19 gi|134046201|ref|YP_001097686.1| - 0.036 13.5 1.0 3.7 6.9 0.1 3.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_7 PF12775.7 gi|134046201|ref|YP_001097686.1| - 0.055 13.0 0.1 0.22 11.0 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|134046201|ref|YP_001097686.1| - 0.085 11.9 0.0 0.17 10.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_29 PF13555.6 gi|134046201|ref|YP_001097686.1| - 0.11 12.3 0.1 0.26 11.0 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Peptidase_C39_2 PF13529.6 gi|134046201|ref|YP_001097686.1| - 0.22 12.1 1.1 1.5 9.3 0.4 3.0 1 1 1 2 2 2 0 Peptidase_C39 like family Mg_chelatase PF01078.21 gi|134046201|ref|YP_001097686.1| - 0.22 10.9 0.0 0.45 9.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Myb_DNA-bind_6 PF13921.6 gi|134046201|ref|YP_001097686.1| - 6.2 7.1 6.6 7.7 6.8 0.1 4.3 5 0 0 5 5 5 0 Myb-like DNA-binding domain Cpta_toxin PF07254.12 gi|134046202|ref|YP_001097687.1| - 0.55 10.2 3.9 0.55 10.2 0.9 2.3 3 0 0 3 3 3 0 Membrane-bound toxin component of toxin-antitoxin system Phage_integrase PF00589.22 gi|134046203|ref|YP_001097688.1| - 3e-11 43.4 1.5 6.6e-11 42.3 0.0 2.2 2 2 0 2 2 2 1 Phage integrase family Integrase_1 PF12835.7 gi|134046203|ref|YP_001097688.1| - 3.8e-07 30.3 0.1 1.4e-06 28.5 0.0 2.0 2 0 0 2 2 2 1 Integrase Phage_int_SAM_6 PF18644.1 gi|134046203|ref|YP_001097688.1| - 0.017 15.1 0.2 0.054 13.5 0.2 1.9 1 0 0 1 1 1 0 Phage integrase SAM-like domain DUF494 PF04361.13 gi|134046203|ref|YP_001097688.1| - 0.069 13.0 0.1 0.14 12.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF494) DUF2470 PF10615.9 gi|134046203|ref|YP_001097688.1| - 0.097 13.3 0.1 0.49 11.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2470) RPS31 PF17067.5 gi|134046203|ref|YP_001097688.1| - 0.14 12.3 0.1 3.5 7.9 0.0 2.6 1 1 1 2 2 2 0 Ribosomal protein S31e DUF4357 PF14267.6 gi|134046204|ref|YP_001097689.1| - 5e-17 61.6 0.0 1.6e-16 60.0 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4357) GIY-YIG PF01541.24 gi|134046204|ref|YP_001097689.1| - 0.00026 21.2 0.3 0.00062 20.0 0.3 1.7 1 0 0 1 1 1 1 GIY-YIG catalytic domain DUF2540 PF10802.8 gi|134046205|ref|YP_001097690.1| - 1.9e-20 72.7 0.8 2.1e-20 72.5 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2540) Phage_integrase PF00589.22 gi|134046206|ref|YP_001097691.1| - 4.5e-28 98.2 0.4 1e-27 97.0 0.4 1.6 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|134046206|ref|YP_001097691.1| - 0.00032 21.1 3.7 0.0018 18.7 0.6 3.3 2 1 2 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|134046206|ref|YP_001097691.1| - 0.015 15.7 2.1 0.015 15.7 2.1 3.2 3 2 0 3 3 3 0 Phage integrase SAM-like domain SIMPL PF04402.14 gi|134046206|ref|YP_001097691.1| - 0.12 12.9 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF541) DIRP PF06584.13 gi|134046208|ref|YP_001097693.1| - 0.043 14.0 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 DIRP DEAD PF00270.29 gi|134046209|ref|YP_001097694.1| - 2.8e-50 170.5 0.4 5.8e-50 169.5 0.1 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|134046209|ref|YP_001097694.1| - 6e-33 113.5 1.3 3.8e-31 107.7 0.0 3.3 4 0 0 4 4 4 1 Helicase conserved C-terminal domain DbpA PF03880.15 gi|134046209|ref|YP_001097694.1| - 3.5e-17 62.1 2.8 1.1e-16 60.5 0.8 2.9 2 0 0 2 2 2 1 DbpA RNA binding domain ResIII PF04851.15 gi|134046209|ref|YP_001097694.1| - 2.4e-09 37.4 0.0 5.7e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CMS1 PF14617.6 gi|134046209|ref|YP_001097694.1| - 2.7e-05 23.6 0.9 0.0018 17.7 0.1 2.5 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit AAA_30 PF13604.6 gi|134046209|ref|YP_001097694.1| - 0.00095 18.9 0.0 0.002 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain Helicase_RecD PF05127.14 gi|134046209|ref|YP_001097694.1| - 0.012 15.4 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 Helicase UvrA_inter PF17760.1 gi|134046209|ref|YP_001097694.1| - 0.018 15.1 0.3 0.65 10.1 0.1 3.3 3 1 0 3 3 3 0 UvrA interaction domain Phage_integrase PF00589.22 gi|134046210|ref|YP_001097695.1| - 1.2e-25 90.3 1.4 2.1e-25 89.5 1.4 1.3 1 1 0 1 1 1 1 Phage integrase family DUF3023 PF11224.8 gi|134046210|ref|YP_001097695.1| - 0.029 14.2 0.4 0.069 13.0 0.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3023) SpoIIID PF12116.8 gi|134046211|ref|YP_001097696.1| - 0.012 15.7 0.1 0.033 14.3 0.1 1.8 1 0 0 1 1 1 0 Stage III sporulation protein D HTH_28 PF13518.6 gi|134046211|ref|YP_001097696.1| - 0.013 15.6 0.0 0.036 14.2 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_psq PF05225.16 gi|134046211|ref|YP_001097696.1| - 0.013 15.2 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_40 PF14493.6 gi|134046211|ref|YP_001097696.1| - 0.023 15.2 1.8 0.069 13.6 0.9 2.3 1 1 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|134046211|ref|YP_001097696.1| - 0.024 14.5 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 gi|134046211|ref|YP_001097696.1| - 0.046 13.1 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.19 gi|134046211|ref|YP_001097696.1| - 0.059 12.9 0.5 0.15 11.6 0.5 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF5598 PF18127.1 gi|134046211|ref|YP_001097696.1| - 0.14 12.6 3.9 0.99 9.9 0.1 3.2 2 1 2 4 4 4 0 Domain of unknown function (DUF5598) CBS PF00571.28 gi|134046212|ref|YP_001097697.1| - 2e-24 85.8 2.0 2.5e-11 43.8 0.1 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|134046212|ref|YP_001097697.1| - 2.3e-16 59.8 7.6 2.9e-09 36.6 0.3 3.0 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|134046212|ref|YP_001097697.1| - 1.8e-07 31.0 5.8 1.8e-07 31.0 5.8 2.0 1 1 0 2 2 2 1 Peptidase M50B-like 7TMR-DISM_7TM PF07695.11 gi|134046213|ref|YP_001097698.1| - 0.002 18.0 4.6 0.0022 17.9 4.6 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling DUF2157 PF09925.9 gi|134046213|ref|YP_001097698.1| - 0.006 16.4 2.7 0.0074 16.1 2.7 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2157) Tetraspanin PF00335.20 gi|134046213|ref|YP_001097698.1| - 0.012 15.3 5.0 0.015 15.0 5.0 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF2964 PF11177.8 gi|134046213|ref|YP_001097698.1| - 0.014 15.6 5.4 0.17 12.1 2.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) DUF4714 PF15833.5 gi|134046213|ref|YP_001097698.1| - 0.11 12.4 0.4 0.14 12.1 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4714) TMEM208_SND2 PF05620.11 gi|134046213|ref|YP_001097698.1| - 0.15 11.8 2.3 0.16 11.7 0.1 1.8 1 1 1 2 2 2 0 SRP-independent targeting protein 2/TMEM208 YfhO PF09586.10 gi|134046213|ref|YP_001097698.1| - 0.24 9.6 6.3 0.28 9.4 6.3 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Pox_A14 PF05767.12 gi|134046213|ref|YP_001097698.1| - 0.76 10.0 5.0 0.32 11.2 1.9 1.9 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 Nitro_FeMo-Co PF02579.17 gi|134046214|ref|YP_001097699.1| - 1.4e-21 76.6 0.0 1.6e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Cytochrom_D1 PF02239.16 gi|134046214|ref|YP_001097699.1| - 0.052 12.1 0.0 0.057 12.0 0.0 1.1 1 0 0 1 1 1 0 Cytochrome D1 heme domain CbiA PF01656.23 gi|134046215|ref|YP_001097700.1| - 9.2e-18 64.5 0.0 1.2e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|134046215|ref|YP_001097700.1| - 2.1e-15 56.9 0.0 8.4e-08 32.0 0.0 3.1 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|134046215|ref|YP_001097700.1| - 3.4e-13 48.8 8.0 2.3e-06 27.2 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134046215|ref|YP_001097700.1| - 4.5e-11 42.3 9.7 8.4e-06 25.6 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_31 PF13614.6 gi|134046215|ref|YP_001097700.1| - 8.8e-10 38.8 0.3 3.2e-06 27.2 0.0 2.6 2 1 0 2 2 2 2 AAA domain Fer4_21 PF14697.6 gi|134046215|ref|YP_001097700.1| - 6.6e-08 32.6 9.3 1.3e-07 31.7 9.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134046215|ref|YP_001097700.1| - 8.7e-08 32.6 4.1 0.0019 18.7 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134046215|ref|YP_001097700.1| - 1.5e-07 31.4 9.3 3e-07 30.5 9.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134046215|ref|YP_001097700.1| - 4.7e-06 27.4 7.7 0.00069 20.5 0.8 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|134046215|ref|YP_001097700.1| - 1.7e-05 24.9 12.6 0.0011 19.1 2.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|134046215|ref|YP_001097700.1| - 6.5e-05 22.3 0.1 0.00015 21.0 0.0 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_2 PF12797.7 gi|134046215|ref|YP_001097700.1| - 7e-05 22.7 9.9 0.0025 17.8 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|134046215|ref|YP_001097700.1| - 0.00026 21.4 4.1 0.41 11.1 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_NifH PF00142.18 gi|134046215|ref|YP_001097700.1| - 0.00063 19.3 0.1 0.097 12.1 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|134046215|ref|YP_001097700.1| - 0.0042 16.9 0.0 0.12 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain Fer4_4 PF12800.7 gi|134046215|ref|YP_001097700.1| - 0.0078 16.6 13.9 0.058 13.9 2.1 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain CBP_BcsQ PF06564.12 gi|134046215|ref|YP_001097700.1| - 0.0084 15.6 0.0 0.056 12.9 0.0 2.0 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|134046215|ref|YP_001097700.1| - 0.016 14.5 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ CLP1_P PF16575.5 gi|134046215|ref|YP_001097700.1| - 0.028 14.2 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_18 PF13238.6 gi|134046215|ref|YP_001097700.1| - 0.029 14.9 0.0 0.067 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|134046215|ref|YP_001097700.1| - 0.057 13.0 0.0 0.098 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Fer4_17 PF13534.6 gi|134046215|ref|YP_001097700.1| - 0.068 13.7 14.3 0.28 11.8 2.5 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|134046215|ref|YP_001097700.1| - 0.074 13.9 6.0 3.6 8.5 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain APS_kinase PF01583.20 gi|134046215|ref|YP_001097700.1| - 0.16 11.8 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Fer4_3 PF12798.7 gi|134046215|ref|YP_001097700.1| - 1.5 9.9 16.5 6.2 8.0 3.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|134046215|ref|YP_001097700.1| - 2.7 8.6 10.7 8.1 7.1 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CbiA PF01656.23 gi|134046216|ref|YP_001097701.1| - 4.8e-18 65.4 0.0 6.3e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|134046216|ref|YP_001097701.1| - 4.1e-14 52.6 0.0 3.3e-06 26.7 0.0 2.5 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|134046216|ref|YP_001097701.1| - 3.3e-09 36.2 14.9 2.6e-06 27.0 2.9 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain AAA_31 PF13614.6 gi|134046216|ref|YP_001097701.1| - 5.6e-09 36.2 0.2 0.004 17.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain Fer4_21 PF14697.6 gi|134046216|ref|YP_001097701.1| - 1.4e-06 28.3 12.1 5.3e-06 26.5 12.1 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134046216|ref|YP_001097701.1| - 2.3e-06 27.6 9.4 0.00035 20.6 0.1 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134046216|ref|YP_001097701.1| - 3.7e-06 26.8 12.6 0.0011 19.0 1.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134046216|ref|YP_001097701.1| - 8.5e-06 25.6 12.0 0.00049 20.0 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134046216|ref|YP_001097701.1| - 9.3e-06 26.1 9.7 0.0037 17.8 2.0 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134046216|ref|YP_001097701.1| - 1.8e-05 24.8 6.7 0.0086 16.2 0.8 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|134046216|ref|YP_001097701.1| - 2.5e-05 23.6 0.0 0.00047 19.4 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase RsgA_GTPase PF03193.16 gi|134046216|ref|YP_001097701.1| - 0.00022 21.2 0.2 0.028 14.3 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase Fer4_16 PF13484.6 gi|134046216|ref|YP_001097701.1| - 0.00058 20.8 5.5 0.013 16.4 0.1 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain AAA_15 PF13175.6 gi|134046216|ref|YP_001097701.1| - 0.0018 18.0 0.0 0.0036 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Fer4_NifH PF00142.18 gi|134046216|ref|YP_001097701.1| - 0.002 17.6 2.9 1.3 8.4 0.1 2.8 3 0 0 3 3 3 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family GTP_EFTU PF00009.27 gi|134046216|ref|YP_001097701.1| - 0.0048 16.5 0.2 0.018 14.6 0.0 1.9 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Fer4_8 PF13183.6 gi|134046216|ref|YP_001097701.1| - 0.0062 17.0 5.7 0.075 13.5 0.2 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain DUF5026 PF16429.5 gi|134046216|ref|YP_001097701.1| - 0.013 15.5 0.0 0.029 14.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5026) CBP_BcsQ PF06564.12 gi|134046216|ref|YP_001097701.1| - 0.015 14.8 0.0 5 6.5 0.0 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ AAA_14 PF13173.6 gi|134046216|ref|YP_001097701.1| - 0.018 15.1 0.0 0.037 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|134046216|ref|YP_001097701.1| - 0.022 15.3 0.0 0.18 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|134046216|ref|YP_001097701.1| - 0.023 13.9 0.4 0.15 11.2 0.2 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_16 PF13191.6 gi|134046216|ref|YP_001097701.1| - 0.026 14.9 0.0 0.064 13.6 0.0 1.6 2 0 0 2 2 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|134046216|ref|YP_001097701.1| - 0.039 13.7 0.0 0.084 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|134046216|ref|YP_001097701.1| - 0.067 12.2 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|134046216|ref|YP_001097701.1| - 0.079 12.9 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 NTPase Fer4_15 PF13459.6 gi|134046216|ref|YP_001097701.1| - 0.093 13.5 3.8 2.8 8.8 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF2075 PF09848.9 gi|134046216|ref|YP_001097701.1| - 0.097 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|134046216|ref|YP_001097701.1| - 0.12 11.8 0.1 0.34 10.4 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|134046216|ref|YP_001097701.1| - 0.17 11.6 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Fer4_4 PF12800.7 gi|134046216|ref|YP_001097701.1| - 0.37 11.4 13.6 0.12 13.0 1.6 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|134046216|ref|YP_001097701.1| - 0.46 11.1 13.8 1 10.0 3.0 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Transposase_mut PF00872.18 gi|134046217|ref|YP_001097702.1| - 0.017 14.0 0.0 0.019 13.8 0.0 1.1 1 0 0 1 1 1 0 Transposase, Mutator family HEPN_Cthe2314 PF18730.1 gi|134046217|ref|YP_001097702.1| - 0.034 14.2 0.4 0.039 14.0 0.4 1.0 1 0 0 1 1 1 0 Cthe_2314-like HEPN Cmyb_C PF09316.10 gi|134046217|ref|YP_001097702.1| - 0.062 13.0 0.0 0.074 12.7 0.0 1.1 1 0 0 1 1 1 0 C-myb, C-terminal DUF1604 PF07713.13 gi|134046217|ref|YP_001097702.1| - 0.11 12.4 0.6 0.2 11.5 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1604) Nitro_FeMo-Co PF02579.17 gi|134046218|ref|YP_001097703.1| - 1.4e-14 54.2 0.1 1.7e-14 53.9 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Ribosomal_S27 PF01599.19 gi|134046220|ref|YP_001097705.1| - 1.3e-20 73.3 3.4 1.8e-20 72.8 3.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.6 gi|134046220|ref|YP_001097705.1| - 0.0017 18.2 2.5 0.015 15.2 2.3 2.2 1 1 1 2 2 2 1 Nudix N-terminal GFA PF04828.14 gi|134046220|ref|YP_001097705.1| - 0.0023 18.2 1.7 0.079 13.3 0.1 2.0 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_L37e PF01907.19 gi|134046220|ref|YP_001097705.1| - 0.0051 16.9 1.1 0.008 16.3 1.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L37e Lar_restr_allev PF14354.6 gi|134046220|ref|YP_001097705.1| - 0.0087 16.4 1.4 0.015 15.6 1.4 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar IBR PF01485.21 gi|134046220|ref|YP_001097705.1| - 0.0094 16.2 0.4 0.012 15.8 0.4 1.3 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain zf_C2H2_10 PF18414.1 gi|134046220|ref|YP_001097705.1| - 0.017 14.6 3.9 2.2 7.9 0.1 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-Mss51 PF13824.6 gi|134046220|ref|YP_001097705.1| - 0.018 15.1 1.6 3 8.0 0.1 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|134046220|ref|YP_001097705.1| - 0.03 14.4 0.8 0.85 9.8 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Spt4 PF06093.13 gi|134046220|ref|YP_001097705.1| - 0.048 13.8 1.0 0.07 13.2 1.0 1.3 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-IS66 PF13005.7 gi|134046220|ref|YP_001097705.1| - 0.048 14.1 1.0 2.2 8.8 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DZR PF12773.7 gi|134046220|ref|YP_001097705.1| - 0.056 13.5 1.6 0.082 13.0 1.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|134046220|ref|YP_001097705.1| - 0.086 12.8 2.7 0.16 12.0 2.7 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|134046220|ref|YP_001097705.1| - 0.088 12.3 5.4 0.18 11.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-CCHC_4 PF14392.6 gi|134046220|ref|YP_001097705.1| - 0.09 12.5 0.6 9.5 6.0 0.1 2.2 2 0 0 2 2 2 0 Zinc knuckle RNA_POL_M_15KD PF02150.16 gi|134046220|ref|YP_001097705.1| - 0.1 12.5 4.0 1.9 8.5 4.0 2.3 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-tcix PF14952.6 gi|134046220|ref|YP_001097705.1| - 0.15 11.7 0.6 0.15 11.7 0.6 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF1936 PF09151.10 gi|134046220|ref|YP_001097705.1| - 0.17 11.8 4.5 0.37 10.7 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) zinc_ribbon_2 PF13240.6 gi|134046220|ref|YP_001097705.1| - 0.22 11.3 8.0 0.49 10.2 0.6 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|134046220|ref|YP_001097705.1| - 0.23 11.2 4.0 1.7 8.4 0.3 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_13 PF09855.9 gi|134046220|ref|YP_001097705.1| - 0.68 10.1 4.7 2.6 8.3 0.6 2.3 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ribosomal_S24e PF01282.19 gi|134046221|ref|YP_001097706.1| - 1.3e-21 76.3 0.9 1.5e-21 76.1 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e ASF1_hist_chap PF04729.13 gi|134046221|ref|YP_001097706.1| - 0.053 13.5 0.1 0.057 13.4 0.1 1.2 1 0 0 1 1 1 0 ASF1 like histone chaperone DUF359 PF04019.12 gi|134046222|ref|YP_001097707.1| - 1.2e-38 131.6 0.1 1.4e-38 131.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF4911 PF16256.5 gi|134046222|ref|YP_001097707.1| - 0.084 12.9 0.4 0.45 10.5 0.1 2.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4911) DUF1870 PF08965.10 gi|134046222|ref|YP_001097707.1| - 0.15 12.1 0.0 0.33 11.0 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1870) Spt4 PF06093.13 gi|134046223|ref|YP_001097708.1| - 3.6e-12 46.2 0.8 9.1e-12 44.9 0.8 1.6 1 1 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|134046223|ref|YP_001097708.1| - 0.0015 18.1 2.4 0.0019 17.7 2.4 1.2 1 0 0 1 1 1 1 RecR protein zn-ribbon_14 PF16503.5 gi|134046223|ref|YP_001097708.1| - 0.082 12.4 1.4 0.21 11.1 1.5 1.7 1 1 1 2 2 2 0 Zinc-ribbon SHS2_Rpb7-N PF03876.17 gi|134046224|ref|YP_001097709.1| - 5.2e-17 62.0 0.0 9e-17 61.2 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|134046224|ref|YP_001097709.1| - 3.9e-15 55.9 2.3 8e-15 54.9 2.3 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|134046224|ref|YP_001097709.1| - 0.0024 18.1 0.2 0.011 16.0 0.2 1.9 1 1 0 1 1 1 1 RNA polymerase III subunit Rpc25 DHO_dh PF01180.21 gi|134046225|ref|YP_001097710.1| - 1.1e-81 274.4 7.3 1.2e-81 274.2 7.3 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|134046225|ref|YP_001097710.1| - 8.3e-12 44.8 1.3 8.2e-11 41.6 1.3 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|134046225|ref|YP_001097710.1| - 1.1e-07 31.6 10.5 1.2e-05 24.9 4.8 2.3 1 1 0 2 2 2 2 Nitronate monooxygenase DUF561 PF04481.12 gi|134046225|ref|YP_001097710.1| - 0.0039 16.4 2.0 0.021 14.0 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF561) IMPDH PF00478.25 gi|134046225|ref|YP_001097710.1| - 0.0084 15.1 13.7 0.024 13.6 13.7 1.8 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain PcrB PF01884.17 gi|134046225|ref|YP_001097710.1| - 0.014 14.8 3.4 0.86 9.0 0.1 2.4 2 0 0 2 2 2 0 PcrB family His_biosynth PF00977.21 gi|134046225|ref|YP_001097710.1| - 0.02 14.3 2.0 0.036 13.5 0.2 2.2 3 0 0 3 3 3 0 Histidine biosynthesis protein MuF_C PF18819.1 gi|134046225|ref|YP_001097710.1| - 0.13 12.3 1.9 0.82 9.7 0.0 2.3 2 0 0 2 2 2 0 Phage MuF-C-terminal domain NanE PF04131.14 gi|134046225|ref|YP_001097710.1| - 0.2 10.8 6.4 0.13 11.4 3.3 2.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|134046225|ref|YP_001097710.1| - 0.26 10.3 9.4 0.73 8.8 9.4 1.6 1 1 0 1 1 1 0 FMN-dependent dehydrogenase G3P_antiterm PF04309.12 gi|134046225|ref|YP_001097710.1| - 0.36 10.2 3.9 1.4 8.3 0.4 2.8 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator ThiG PF05690.14 gi|134046225|ref|YP_001097710.1| - 2.2 7.5 8.6 0.069 12.4 1.0 2.1 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG GCS2 PF04107.13 gi|134046227|ref|YP_001097712.1| - 8.8e-40 136.9 0.0 1.2e-39 136.4 0.0 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) RL PF17797.1 gi|134046227|ref|YP_001097712.1| - 0.042 13.8 0.6 0.34 10.9 0.1 2.6 3 0 0 3 3 3 0 RL domain eIF3_p135 PF12807.7 gi|134046227|ref|YP_001097712.1| - 0.12 12.4 1.8 0.15 12.0 0.3 1.9 2 1 0 2 2 2 0 Translation initiation factor eIF3 subunit 135 RimK PF08443.11 gi|134046228|ref|YP_001097713.1| - 3.8e-12 46.2 0.1 6.4e-12 45.5 0.1 1.4 1 1 0 1 1 1 1 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|134046228|ref|YP_001097713.1| - 2.7e-11 43.4 0.4 3.8e-11 42.9 0.4 1.1 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|134046228|ref|YP_001097713.1| - 3.7e-08 33.6 0.5 5.4e-08 33.0 0.5 1.3 1 0 0 1 1 1 1 ATP-grasp domain R2K_2 PF18299.1 gi|134046228|ref|YP_001097713.1| - 6.5e-05 22.8 0.0 9.4e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 2 ATPgrasp_ST PF14397.6 gi|134046228|ref|YP_001097713.1| - 7.2e-05 22.2 0.1 0.014 14.6 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp R2K_3 PF14243.6 gi|134046228|ref|YP_001097713.1| - 0.00014 22.0 0.0 0.00022 21.3 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 ATP-grasp_4 PF13535.6 gi|134046228|ref|YP_001097713.1| - 0.0022 17.6 0.0 0.2 11.2 0.0 2.5 2 0 0 2 2 2 1 ATP-grasp domain TTL PF03133.15 gi|134046228|ref|YP_001097713.1| - 0.0065 15.6 0.1 0.077 12.1 0.0 2.0 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_YheCD PF14398.6 gi|134046228|ref|YP_001097713.1| - 0.016 14.5 0.0 0.046 13.0 0.0 1.7 2 0 0 2 2 2 0 YheC/D like ATP-grasp ATP-grasp PF02222.22 gi|134046228|ref|YP_001097713.1| - 0.065 12.8 0.1 0.25 10.9 0.1 1.9 1 1 0 1 1 1 0 ATP-grasp domain RLAN PF14401.6 gi|134046229|ref|YP_001097714.1| - 5.3e-10 39.1 0.0 1.1e-09 38.1 0.0 1.5 1 1 0 1 1 1 1 RimK-like ATPgrasp N-terminal domain CRISPR_Cas2 PF09827.9 gi|134046229|ref|YP_001097714.1| - 0.11 12.7 0.9 0.49 10.6 0.3 2.3 1 1 1 2 2 2 0 CRISPR associated protein Cas2 DUF378 PF04070.12 gi|134046230|ref|YP_001097715.1| - 8.5e-22 76.8 9.2 9.7e-22 76.6 9.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF378) DUF981 PF06168.11 gi|134046230|ref|YP_001097715.1| - 0.0074 16.2 3.5 0.45 10.4 0.8 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF981) Flavodoxin_4 PF12682.7 gi|134046231|ref|YP_001097716.1| - 1.5e-11 44.2 0.8 1.2e-10 41.4 0.8 1.9 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.15 gi|134046231|ref|YP_001097716.1| - 6.3e-07 29.3 0.0 9.3e-07 28.7 0.0 1.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|134046231|ref|YP_001097716.1| - 6.9e-07 29.1 0.2 0.00064 19.4 0.1 2.2 2 0 0 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|134046231|ref|YP_001097716.1| - 8.8e-06 26.0 0.1 0.00037 20.8 0.0 2.3 2 1 0 2 2 2 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|134046231|ref|YP_001097716.1| - 0.0052 17.0 0.3 3.2 7.9 0.1 2.3 2 1 0 2 2 2 2 Flavodoxin Flavodoxin_2 PF02525.17 gi|134046231|ref|YP_001097716.1| - 0.0096 15.6 0.1 0.033 13.9 0.1 1.8 1 1 0 1 1 1 1 Flavodoxin-like fold TatD_DNase PF01026.21 gi|134046232|ref|YP_001097717.1| - 5.1e-18 65.4 0.1 6.1e-18 65.1 0.1 1.1 1 0 0 1 1 1 1 TatD related DNase C-C_Bond_Lyase PF15617.6 gi|134046232|ref|YP_001097717.1| - 0.064 12.4 0.0 0.094 11.9 0.0 1.2 1 0 0 1 1 1 0 C-C_Bond_Lyase of the TIM-Barrel fold Beta-Casp PF10996.8 gi|134046233|ref|YP_001097718.1| - 1.3e-16 60.8 0.0 2.5e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.27 gi|134046233|ref|YP_001097718.1| - 2.9e-14 53.6 0.0 1e-13 51.8 0.0 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|134046233|ref|YP_001097718.1| - 3.6e-09 36.4 0.0 7.4e-09 35.4 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|134046233|ref|YP_001097718.1| - 1.3e-08 34.5 0.0 2.1e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|134046233|ref|YP_001097718.1| - 5.3e-08 32.6 0.0 1e-07 31.7 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|134046233|ref|YP_001097718.1| - 0.0012 18.7 0.0 0.24 11.3 0.0 3.0 3 1 0 3 3 3 1 Beta-lactamase superfamily domain DUF4342 PF14242.6 gi|134046233|ref|YP_001097718.1| - 0.046 13.7 0.1 10 6.2 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) RNase_P_p30 PF01876.16 gi|134046234|ref|YP_001097719.1| - 2.5e-45 154.6 0.0 2.9e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 DUF211 PF02680.14 gi|134046235|ref|YP_001097720.1| - 7.4e-38 128.6 3.3 8.3e-38 128.4 3.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Fasciclin PF02469.22 gi|134046235|ref|YP_001097720.1| - 0.058 13.6 0.2 0.066 13.4 0.2 1.2 1 0 0 1 1 1 0 Fasciclin domain Oxidored_nitro PF00148.19 gi|134046236|ref|YP_001097721.1| - 4.9e-15 55.2 0.1 2.2e-14 53.0 0.1 1.9 2 1 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase Rep_fac_C PF08542.11 gi|134046237|ref|YP_001097722.1| - 2e-23 82.6 0.3 5.1e-23 81.3 0.1 1.9 2 0 0 2 2 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|134046237|ref|YP_001097722.1| - 5.2e-17 62.1 0.0 1.5e-13 50.8 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 gi|134046237|ref|YP_001097722.1| - 1.2e-16 61.4 0.0 2.6e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|134046237|ref|YP_001097722.1| - 5.4e-08 33.0 0.0 1.3e-07 31.7 0.0 1.8 2 0 0 2 2 2 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|134046237|ref|YP_001097722.1| - 3.1e-07 30.3 0.0 5.8e-06 26.1 0.0 2.6 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|134046237|ref|YP_001097722.1| - 5.7e-06 26.8 0.1 0.00061 20.2 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|134046237|ref|YP_001097722.1| - 2.1e-05 24.6 0.0 4.5e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|134046237|ref|YP_001097722.1| - 3.9e-05 23.9 0.1 7.6e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 AAA C-terminal domain AAA_3 PF07726.11 gi|134046237|ref|YP_001097722.1| - 9.3e-05 22.3 0.0 0.00019 21.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|134046237|ref|YP_001097722.1| - 0.00017 21.1 0.0 0.27 10.6 0.0 2.2 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|134046237|ref|YP_001097722.1| - 0.00051 20.6 0.0 0.0017 18.9 0.0 2.0 1 1 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|134046237|ref|YP_001097722.1| - 0.00061 19.8 0.0 0.0032 17.5 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol3_delta PF06144.13 gi|134046237|ref|YP_001097722.1| - 0.00079 19.2 0.0 0.0015 18.4 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_24 PF13479.6 gi|134046237|ref|YP_001097722.1| - 0.0029 17.3 0.0 0.0078 16.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|134046237|ref|YP_001097722.1| - 0.0059 16.9 0.1 0.83 9.9 0.1 2.5 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|134046237|ref|YP_001097722.1| - 0.019 14.2 0.3 0.068 12.4 0.0 2.1 3 1 0 3 3 3 0 TIP49 P-loop domain RNA_helicase PF00910.22 gi|134046237|ref|YP_001097722.1| - 0.024 15.0 0.0 0.07 13.5 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_5 PF07728.14 gi|134046237|ref|YP_001097722.1| - 0.025 14.6 0.1 0.22 11.5 0.1 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|134046237|ref|YP_001097722.1| - 0.039 13.6 0.0 2.2 8.0 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain TniB PF05621.11 gi|134046237|ref|YP_001097722.1| - 0.045 13.2 0.0 0.11 11.9 0.0 1.7 2 0 0 2 2 1 0 Bacterial TniB protein AAA_28 PF13521.6 gi|134046237|ref|YP_001097722.1| - 0.045 14.0 0.0 0.14 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|134046237|ref|YP_001097722.1| - 0.051 13.3 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein TPR_7 PF13176.6 gi|134046237|ref|YP_001097722.1| - 0.061 13.4 0.0 0.38 10.9 0.0 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_33 PF13671.6 gi|134046237|ref|YP_001097722.1| - 0.074 13.2 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|134046237|ref|YP_001097722.1| - 0.075 12.5 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region KTI12 PF08433.10 gi|134046237|ref|YP_001097722.1| - 0.084 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_25 PF13481.6 gi|134046237|ref|YP_001097722.1| - 0.091 12.3 0.2 0.18 11.4 0.2 1.5 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|134046237|ref|YP_001097722.1| - 0.11 11.8 0.0 0.31 10.4 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family CbiA PF01656.23 gi|134046237|ref|YP_001097722.1| - 0.12 12.4 0.1 0.43 10.6 0.0 1.8 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Viral_helicase1 PF01443.18 gi|134046237|ref|YP_001097722.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Nitroreductase PF00881.24 gi|134046238|ref|YP_001097723.1| - 9.8e-37 126.6 0.0 1.1e-36 126.4 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|134046238|ref|YP_001097723.1| - 1.2e-15 57.7 2.1 7.1e-07 29.0 0.1 3.1 1 1 2 3 3 3 3 Putative TM nitroreductase ILVD_EDD PF00920.21 gi|134046238|ref|YP_001097723.1| - 0.045 12.4 0.5 0.14 10.7 0.1 1.8 2 0 0 2 2 2 0 Dehydratase family LUD_dom PF02589.15 gi|134046239|ref|YP_001097724.1| - 4.8e-45 153.6 0.1 5.4e-45 153.4 0.1 1.0 1 0 0 1 1 1 1 LUD domain CxxCxxCC PF03692.15 gi|134046239|ref|YP_001097724.1| - 0.03 15.0 0.2 0.056 14.1 0.2 1.4 1 0 0 1 1 1 0 Putative zinc- or iron-chelating domain ECF_trnsprt PF12822.7 gi|134046240|ref|YP_001097725.1| - 4e-09 36.8 28.9 5.2e-09 36.4 28.9 1.2 1 0 0 1 1 1 1 ECF transporter, substrate-specific component 5TM-5TMR_LYT PF07694.12 gi|134046240|ref|YP_001097725.1| - 4.1e-05 23.2 18.0 0.0002 20.9 18.0 1.9 1 1 0 1 1 1 1 5TMR of 5TMR-LYT DUF2207 PF09972.9 gi|134046241|ref|YP_001097726.1| - 3.3 6.4 6.0 4.9 5.8 6.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC2_membrane_5 PF13346.6 gi|134046242|ref|YP_001097727.1| - 0.0038 16.8 2.0 0.0044 16.6 2.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein Tmpp129 PF10272.9 gi|134046242|ref|YP_001097727.1| - 0.089 12.1 0.1 0.1 11.9 0.1 1.0 1 0 0 1 1 1 0 Putative transmembrane protein precursor MCR_C PF04609.12 gi|134046244|ref|YP_001097729.1| - 6.5e-115 382.9 2.1 7.8e-115 382.6 2.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF3420 PF11900.8 gi|134046244|ref|YP_001097729.1| - 0.0015 18.6 2.5 0.014 15.6 1.2 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF3420) CBS PF00571.28 gi|134046245|ref|YP_001097730.1| - 6.7e-21 74.5 2.4 2.2e-09 37.6 0.0 3.1 3 0 0 3 3 3 2 CBS domain SNF PF00209.18 gi|134046246|ref|YP_001097731.1| - 2.9e-114 382.6 40.5 1e-75 255.4 22.7 2.0 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family PfkB PF00294.24 gi|134046247|ref|YP_001097732.1| - 3.7e-54 184.1 0.0 4.6e-54 183.8 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase JIP_LZII PF16471.5 gi|134046247|ref|YP_001097732.1| - 0.15 12.3 1.2 0.31 11.2 1.2 1.4 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II His_biosynth PF00977.21 gi|134046248|ref|YP_001097733.1| - 1e-78 264.0 3.3 1.1e-78 263.8 3.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|134046248|ref|YP_001097733.1| - 1.3e-10 40.9 0.1 0.00045 19.4 0.0 2.2 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|134046248|ref|YP_001097733.1| - 8.8e-08 31.7 1.0 0.0051 16.1 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|134046248|ref|YP_001097733.1| - 1.9e-07 30.6 2.4 0.0026 17.0 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Trp_syntA PF00290.20 gi|134046248|ref|YP_001097733.1| - 7.9e-06 24.9 3.2 0.0017 17.3 0.4 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain NanE PF04131.14 gi|134046248|ref|YP_001097733.1| - 1.1e-05 24.7 0.3 0.025 13.8 0.0 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 gi|134046248|ref|YP_001097733.1| - 3.4e-05 23.0 2.1 0.025 13.6 0.1 2.1 1 1 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|134046248|ref|YP_001097733.1| - 3.7e-05 23.1 1.2 0.0011 18.3 0.1 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase IGPS PF00218.21 gi|134046248|ref|YP_001097733.1| - 7e-05 22.1 0.2 0.0071 15.5 0.0 2.9 2 1 0 3 3 3 1 Indole-3-glycerol phosphate synthase PcrB PF01884.17 gi|134046248|ref|YP_001097733.1| - 0.0002 20.9 3.7 0.00073 19.1 0.3 2.2 2 0 0 2 2 2 1 PcrB family FMN_dh PF01070.18 gi|134046248|ref|YP_001097733.1| - 0.00096 18.3 0.9 0.75 8.8 0.1 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase G3P_antiterm PF04309.12 gi|134046248|ref|YP_001097733.1| - 0.0071 15.8 1.7 1.4 8.4 0.1 2.4 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator NMO PF03060.15 gi|134046248|ref|YP_001097733.1| - 0.024 14.0 1.7 0.4 10.0 1.6 2.0 1 1 0 1 1 1 0 Nitronate monooxygenase Peptidase_M22 PF00814.25 gi|134046249|ref|YP_001097734.1| - 6.8e-85 285.1 0.0 9.1e-85 284.6 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.23 gi|134046249|ref|YP_001097734.1| - 1.8e-05 24.8 0.0 0.0018 18.3 0.1 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.14 gi|134046249|ref|YP_001097734.1| - 2.1e-05 24.0 0.0 4.8e-05 22.8 0.0 1.7 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 gi|134046249|ref|YP_001097734.1| - 0.00012 21.8 0.0 0.00022 20.9 0.0 1.4 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|134046249|ref|YP_001097734.1| - 0.0024 17.3 0.6 0.0039 16.6 0.6 1.4 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|134046249|ref|YP_001097734.1| - 0.053 12.8 0.0 0.11 11.8 0.0 1.5 1 1 0 1 1 1 0 Protein tyrosine kinase tRNA-Thr_ED PF08915.11 gi|134046250|ref|YP_001097735.1| - 1.1e-53 180.9 0.1 3e-53 179.6 0.1 1.7 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|134046250|ref|YP_001097735.1| - 2.9e-21 75.4 0.8 2.9e-21 75.4 0.8 2.2 2 1 1 3 3 3 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|134046250|ref|YP_001097735.1| - 1e-14 54.9 0.0 5.1e-14 52.6 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Annexin PF00191.20 gi|134046250|ref|YP_001097735.1| - 0.095 12.8 0.2 6.9 6.8 0.0 2.6 2 0 0 2 2 2 0 Annexin MCPsignal PF00015.21 gi|134046251|ref|YP_001097736.1| - 5.1e-37 127.3 43.7 1.5e-33 116.0 24.4 2.7 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|134046251|ref|YP_001097736.1| - 1.5e-06 28.4 19.3 0.13 12.6 0.1 4.2 2 2 1 3 3 3 3 Bacterial protein of unknown function (DUF948) DASH_Dad1 PF08649.10 gi|134046251|ref|YP_001097736.1| - 0.00086 19.4 15.8 0.0037 17.4 0.4 4.6 2 2 2 5 5 5 1 DASH complex subunit Dad1 YscO PF07321.12 gi|134046251|ref|YP_001097736.1| - 0.0019 18.1 4.4 0.0019 18.1 4.4 2.2 2 1 0 2 2 2 1 Type III secretion protein YscO Collagen_mid PF15984.5 gi|134046251|ref|YP_001097736.1| - 0.0027 17.5 1.2 0.0045 16.8 0.4 1.6 2 0 0 2 2 2 1 Bacterial collagen, middle region T3SSipB PF16535.5 gi|134046251|ref|YP_001097736.1| - 0.0057 17.2 14.6 0.029 14.8 7.4 2.5 2 1 0 2 2 2 1 Type III cell invasion protein SipB T7SS_ESX_EspC PF10824.8 gi|134046251|ref|YP_001097736.1| - 0.0077 16.7 4.2 2.1 8.9 0.2 3.8 1 1 3 4 4 4 1 Excreted virulence factor EspC, type VII ESX diderm WXG100 PF06013.12 gi|134046251|ref|YP_001097736.1| - 0.018 15.3 12.4 0.93 9.8 0.0 4.6 3 1 1 5 5 5 0 Proteins of 100 residues with WXG ZapB PF06005.12 gi|134046251|ref|YP_001097736.1| - 0.018 15.5 1.7 0.018 15.5 1.7 3.5 2 2 0 2 2 2 0 Cell division protein ZapB DUF1664 PF07889.12 gi|134046251|ref|YP_001097736.1| - 0.019 15.0 22.0 0.29 11.2 2.8 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|134046251|ref|YP_001097736.1| - 0.037 14.3 21.9 2.2 8.7 1.2 3.5 3 1 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HisKA PF00512.25 gi|134046251|ref|YP_001097736.1| - 0.045 13.8 4.3 9.8 6.3 0.7 3.7 3 1 0 3 3 3 0 His Kinase A (phospho-acceptor) domain Syntaxin-6_N PF09177.11 gi|134046251|ref|YP_001097736.1| - 0.047 14.2 13.2 1.3 9.6 4.8 3.1 2 1 0 2 2 2 0 Syntaxin 6, N-terminal DASH_Duo1 PF08651.10 gi|134046251|ref|YP_001097736.1| - 0.054 13.3 19.9 0.51 10.1 1.2 4.5 3 1 0 4 4 4 0 DASH complex subunit Duo1 SKA2 PF16740.5 gi|134046251|ref|YP_001097736.1| - 0.073 12.9 10.2 0.24 11.2 4.8 3.2 3 1 0 3 3 3 0 Spindle and kinetochore-associated protein 2 APG17 PF04108.12 gi|134046251|ref|YP_001097736.1| - 0.073 12.2 12.8 0.78 8.8 6.5 2.7 2 1 0 2 2 2 0 Autophagy protein Apg17 Laminin_II PF06009.12 gi|134046251|ref|YP_001097736.1| - 0.14 12.2 25.8 0.66 10.0 8.7 3.4 2 1 1 3 3 3 0 Laminin Domain II KxDL PF10241.9 gi|134046251|ref|YP_001097736.1| - 0.17 12.2 15.3 2.1 8.7 0.1 4.2 2 2 2 4 4 4 0 Uncharacterized conserved protein Sec34 PF04136.15 gi|134046251|ref|YP_001097736.1| - 0.21 11.5 12.9 0.33 10.8 4.4 3.1 3 0 0 3 3 3 0 Sec34-like family Seryl_tRNA_N PF02403.22 gi|134046251|ref|YP_001097736.1| - 0.26 11.6 26.9 1.6 9.0 2.3 3.5 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF1759 PF03564.15 gi|134046251|ref|YP_001097736.1| - 0.32 10.9 13.4 7.7 6.4 0.2 3.7 2 1 0 3 3 3 0 Protein of unknown function (DUF1759) Syntaxin_2 PF14523.6 gi|134046251|ref|YP_001097736.1| - 0.36 11.2 20.6 21 5.6 6.6 4.1 1 1 2 3 3 3 0 Syntaxin-like protein RPW8 PF05659.11 gi|134046251|ref|YP_001097736.1| - 0.87 9.3 15.8 1.1 8.9 1.5 3.4 2 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 I_LWEQ PF01608.17 gi|134046251|ref|YP_001097736.1| - 0.92 9.7 19.1 0.16 12.2 1.8 2.4 1 1 1 2 2 2 0 I/LWEQ domain TPR_MLP1_2 PF07926.12 gi|134046251|ref|YP_001097736.1| - 1.1 9.3 19.6 2.9 8.0 10.9 3.2 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein Cauli_AT PF03233.13 gi|134046251|ref|YP_001097736.1| - 1.1 9.1 17.6 0.44 10.4 1.5 3.1 3 0 0 3 3 3 0 Aphid transmission protein Occludin_ELL PF07303.13 gi|134046251|ref|YP_001097736.1| - 1.2 9.9 8.7 22 5.8 1.2 3.8 3 1 1 4 4 4 0 Occludin homology domain Tweety PF04906.13 gi|134046251|ref|YP_001097736.1| - 1.2 7.7 10.6 0.21 10.2 2.7 2.7 2 1 1 3 3 3 0 Tweety Fib_alpha PF08702.10 gi|134046251|ref|YP_001097736.1| - 1.4 9.1 21.0 1.7 8.8 0.7 3.2 2 1 0 3 3 3 0 Fibrinogen alpha/beta chain family FlgN PF05130.12 gi|134046251|ref|YP_001097736.1| - 1.6 9.3 13.7 0.33 11.5 1.0 2.7 2 1 0 2 2 2 0 FlgN protein GARP PF16731.5 gi|134046251|ref|YP_001097736.1| - 2.2 7.9 22.6 1.4 8.6 0.5 2.8 2 1 1 3 3 3 0 Glutamic acid/alanine-rich protein of Trypanosoma DUF2203 PF09969.9 gi|134046251|ref|YP_001097736.1| - 2.5 8.8 17.0 21 5.9 0.6 3.5 2 2 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) SYF2 PF08231.12 gi|134046251|ref|YP_001097736.1| - 2.6 8.4 11.6 2.2 8.7 6.8 2.4 1 1 1 2 2 2 0 SYF2 splicing factor GvpL_GvpF PF06386.11 gi|134046251|ref|YP_001097736.1| - 2.7 7.9 8.0 9.1 6.1 3.3 2.3 1 1 1 2 2 2 0 Gas vesicle synthesis protein GvpL/GvpF TMPIT PF07851.13 gi|134046251|ref|YP_001097736.1| - 2.7 7.2 16.9 1.3 8.2 7.5 2.6 1 1 2 3 3 3 0 TMPIT-like protein DUF3450 PF11932.8 gi|134046251|ref|YP_001097736.1| - 3 7.1 16.3 0.5 9.6 7.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3450) DUF16 PF01519.16 gi|134046251|ref|YP_001097736.1| - 4.1 7.9 22.9 1.8e+04 -9.4 22.9 3.9 1 1 0 1 1 0 0 Protein of unknown function DUF16 NPV_P10 PF05531.12 gi|134046251|ref|YP_001097736.1| - 4.5 7.8 18.0 11 6.6 0.9 4.3 2 1 1 3 3 2 0 Nucleopolyhedrovirus P10 protein HAP1_N PF04849.13 gi|134046251|ref|YP_001097736.1| - 4.8 6.3 19.6 1.7 7.8 9.0 2.8 1 1 0 2 2 2 0 HAP1 N-terminal conserved region UPF0449 PF15136.6 gi|134046251|ref|YP_001097736.1| - 4.9 7.7 11.6 44 4.6 0.2 3.5 3 1 0 3 3 3 0 Uncharacterised protein family UPF0449 PRKG1_interact PF15898.5 gi|134046251|ref|YP_001097736.1| - 5 8.1 15.7 7.9 7.5 7.3 3.0 3 0 0 3 3 3 0 cGMP-dependent protein kinase interacting domain DUF4665 PF15679.5 gi|134046251|ref|YP_001097736.1| - 5.6 7.7 20.3 4.5 8.0 2.9 4.2 3 2 1 4 4 4 0 Domain of unknown function (DUF4665) DHR10 PF18595.1 gi|134046251|ref|YP_001097736.1| - 6.7 6.8 19.9 1.9 8.6 1.5 2.9 3 0 0 3 3 3 0 Designed helical repeat protein 10 domain COG2 PF06148.11 gi|134046251|ref|YP_001097736.1| - 7 6.7 20.8 3.7 7.6 1.5 4.0 2 1 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Vps53_N PF04100.12 gi|134046251|ref|YP_001097736.1| - 7.5 5.4 23.2 0.083 11.8 3.2 3.0 2 1 1 3 3 3 0 Vps53-like, N-terminal YtxH PF12732.7 gi|134046251|ref|YP_001097736.1| - 8.1 7.1 25.7 3.1 8.4 10.3 4.2 1 1 1 2 2 1 0 YtxH-like protein DUF745 PF05335.13 gi|134046251|ref|YP_001097736.1| - 9.1 6.0 23.6 6.6 6.4 12.3 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF745) HAMP PF00672.25 gi|134046252|ref|YP_001097737.1| - 3.1e-12 46.7 0.0 1.2e-09 38.4 0.0 2.6 2 0 0 2 2 2 2 HAMP domain dCache_3 PF14827.6 gi|134046252|ref|YP_001097737.1| - 6.9e-07 29.2 4.0 2.2e-06 27.5 4.0 1.8 1 1 0 1 1 1 1 Double sensory domain of two-component sensor kinase sCache_3_3 PF17202.4 gi|134046252|ref|YP_001097737.1| - 0.017 15.5 0.2 0.091 13.2 0.0 2.4 2 1 0 2 2 2 0 Single cache domain 3 RL PF17797.1 gi|134046252|ref|YP_001097737.1| - 0.034 14.1 0.2 0.11 12.4 0.2 1.9 1 0 0 1 1 1 0 RL domain DUF948 PF06103.11 gi|134046252|ref|YP_001097737.1| - 0.048 13.9 5.9 2.5 8.4 5.9 2.7 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF3854 PF12965.7 gi|134046252|ref|YP_001097737.1| - 0.1 12.6 0.7 0.36 10.8 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3854) TF_AP-2 PF03299.14 gi|134046252|ref|YP_001097737.1| - 0.41 10.6 5.6 0.22 11.4 2.0 2.1 2 0 0 2 2 2 0 Transcription factor AP-2 YabA PF06156.13 gi|134046252|ref|YP_001097737.1| - 8.1 7.2 11.7 13 6.5 2.5 2.9 2 1 0 2 2 2 0 Initiation control protein YabA UPF0004 PF00919.20 gi|134046253|ref|YP_001097738.1| - 3e-21 75.3 0.3 7.3e-21 74.0 0.3 1.7 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 gi|134046253|ref|YP_001097738.1| - 1.9e-20 73.9 0.2 4.8e-20 72.6 0.2 1.7 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.20 gi|134046253|ref|YP_001097738.1| - 0.00037 20.4 0.1 0.0011 19.0 0.1 1.9 1 0 0 1 1 1 1 TRAM domain DUF2480 PF10652.9 gi|134046253|ref|YP_001097738.1| - 0.014 15.4 0.6 0.5 10.2 0.1 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2480) HECW1_helix PF18436.1 gi|134046253|ref|YP_001097738.1| - 0.054 13.6 0.0 0.29 11.3 0.1 2.1 2 0 0 2 2 2 0 Helical box domain of E3 ubiquitin-protein ligase HECW1 TRAM_2 PF18693.1 gi|134046253|ref|YP_001097738.1| - 0.13 12.5 0.0 0.59 10.3 0.0 2.2 1 1 0 1 1 1 0 TRAM domain RSS_P20 PF11757.8 gi|134046253|ref|YP_001097738.1| - 6.4 7.3 8.8 0.5 10.9 2.2 2.6 3 0 0 3 3 3 0 Suppressor of RNA silencing P21-like N-terminal domain TPP_enzyme_N PF02776.18 gi|134046254|ref|YP_001097739.1| - 1.5e-09 37.7 0.0 1.7e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR_N PF01855.19 gi|134046254|ref|YP_001097739.1| - 3e-05 23.9 0.0 4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Pribosyltran_N PF13793.6 gi|134046255|ref|YP_001097740.1| - 1.8e-33 114.9 0.4 1.6e-29 102.2 0.2 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|134046255|ref|YP_001097740.1| - 4.8e-21 74.9 0.9 4.2e-19 68.6 0.3 2.3 2 0 0 2 2 2 2 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|134046255|ref|YP_001097740.1| - 3.4e-10 40.3 2.8 2.7e-09 37.3 1.3 2.1 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|134046255|ref|YP_001097740.1| - 3.7e-05 23.3 0.4 8.5e-05 22.1 0.1 1.7 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|134046255|ref|YP_001097740.1| - 0.0068 15.9 0.2 0.13 11.7 0.2 2.2 1 1 1 2 2 2 1 Phosphoribosyl transferase NAD_binding_10 PF13460.6 gi|134046255|ref|YP_001097740.1| - 0.028 14.3 1.7 0.037 13.9 0.0 2.0 3 0 0 3 3 3 0 NAD(P)H-binding DHDPS PF00701.22 gi|134046255|ref|YP_001097740.1| - 0.038 12.7 0.0 0.094 11.4 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family GCV_T PF01571.21 gi|134046255|ref|YP_001097740.1| - 0.11 11.8 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Aminomethyltransferase folate-binding domain GMC_oxred_C PF05199.13 gi|134046256|ref|YP_001097741.1| - 8e-12 45.9 0.0 1.2e-11 45.3 0.0 1.3 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|134046256|ref|YP_001097741.1| - 1.6e-06 27.7 0.0 0.00011 21.7 0.0 2.6 3 0 0 3 3 3 1 GMC oxidoreductase Pyr_redox_2 PF07992.14 gi|134046256|ref|YP_001097741.1| - 0.009 15.3 0.9 0.3 10.3 0.9 3.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|134046256|ref|YP_001097741.1| - 0.041 13.5 0.1 0.31 10.6 0.1 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|134046256|ref|YP_001097741.1| - 0.086 13.1 0.0 0.57 10.5 0.0 2.3 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain DUF1611 PF07755.11 gi|134046257|ref|YP_001097742.1| - 6.8e-39 133.2 0.2 9.3e-39 132.8 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|134046257|ref|YP_001097742.1| - 6e-10 39.2 0.0 2e-09 37.6 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_N) Rossmann-like domain CBS PF00571.28 gi|134046258|ref|YP_001097743.1| - 8.9e-29 99.7 4.4 9.5e-15 54.8 0.3 2.1 2 0 0 2 2 2 2 CBS domain CAAD PF14159.6 gi|134046258|ref|YP_001097743.1| - 0.005 16.6 0.1 3.7 7.5 0.0 2.2 2 0 0 2 2 2 2 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Peptidase_S7 PF00949.21 gi|134046258|ref|YP_001097743.1| - 0.062 13.1 0.6 7.6 6.4 0.1 2.4 2 1 0 2 2 2 0 Peptidase S7, Flavivirus NS3 serine protease Dus PF01207.17 gi|134046259|ref|YP_001097744.1| - 1.3e-08 34.3 0.0 1.6e-07 30.7 0.0 2.3 2 1 0 2 2 2 1 Dihydrouridine synthase (Dus) OKR_DC_1_N PF03709.15 gi|134046259|ref|YP_001097744.1| - 0.0037 17.5 0.1 0.0085 16.4 0.1 1.7 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain Septin PF00735.18 gi|134046259|ref|YP_001097744.1| - 0.018 14.3 0.2 0.033 13.5 0.2 1.4 1 0 0 1 1 1 0 Septin Cas_APE2256 PF09651.10 gi|134046259|ref|YP_001097744.1| - 0.025 14.4 0.0 0.056 13.3 0.0 1.5 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) Peptidase_Mx1 PF15890.5 gi|134046259|ref|YP_001097744.1| - 0.079 12.4 0.1 0.23 10.9 0.0 1.7 2 0 0 2 2 2 0 Putative zinc-binding metallo-peptidase GCH_III PF05165.12 gi|134046260|ref|YP_001097745.1| - 7.6e-107 356.2 0.1 9.1e-107 355.9 0.1 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III mCpol PF18182.1 gi|134046260|ref|YP_001097745.1| - 0.081 13.3 0.1 0.25 11.7 0.0 1.8 2 0 0 2 2 2 0 minimal CRISPR polymerase domain ALIX_LYPXL_bnd PF13949.6 gi|134046260|ref|YP_001097745.1| - 0.092 12.0 0.1 2.4 7.4 0.3 2.1 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV UPF0052 PF01933.18 gi|134046261|ref|YP_001097746.1| - 2.1e-44 151.9 0.0 2.4e-44 151.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Glyco_trans_1_3 PF13528.6 gi|134046262|ref|YP_001097747.1| - 8.8e-25 87.6 0.0 1.1e-24 87.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.16 gi|134046262|ref|YP_001097747.1| - 8.9e-25 87.6 0.1 6.4e-24 84.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase family 28 C-terminal domain UDPGT PF00201.18 gi|134046262|ref|YP_001097747.1| - 4e-06 25.9 0.0 6.7e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 UDP-glucoronosyl and UDP-glucosyl transferase Epimerase_2 PF02350.19 gi|134046262|ref|YP_001097747.1| - 0.0015 17.4 0.0 0.0029 16.5 0.0 1.4 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_28 PF03033.20 gi|134046262|ref|YP_001097747.1| - 0.01 15.9 0.0 0.034 14.2 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain SeqA PF03925.13 gi|134046262|ref|YP_001097747.1| - 0.055 13.4 1.0 0.09 12.7 0.3 1.7 2 0 0 2 2 2 0 SeqA protein C-terminal domain DASH_Duo1 PF08651.10 gi|134046262|ref|YP_001097747.1| - 0.098 12.5 0.6 1.8 8.4 0.2 2.5 2 0 0 2 2 2 0 DASH complex subunit Duo1 Sec20 PF03908.13 gi|134046262|ref|YP_001097747.1| - 0.17 11.8 0.5 0.46 10.4 0.2 1.9 2 0 0 2 2 2 0 Sec20 HTH_24 PF13412.6 gi|134046263|ref|YP_001097748.1| - 2.6e-09 36.5 0.9 2.2e-08 33.5 0.3 2.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|134046263|ref|YP_001097748.1| - 4.8e-07 29.6 0.3 2.7e-06 27.2 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|134046263|ref|YP_001097748.1| - 3.2e-06 27.0 0.3 2.2e-05 24.3 0.2 2.3 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|134046263|ref|YP_001097748.1| - 4.3e-06 26.5 0.0 9.2e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|134046263|ref|YP_001097748.1| - 4.8e-05 23.1 0.0 9.4e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|134046263|ref|YP_001097748.1| - 0.00025 20.9 0.4 0.0012 18.7 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|134046263|ref|YP_001097748.1| - 0.0018 18.1 0.0 0.0059 16.5 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FliJ PF02050.16 gi|134046263|ref|YP_001097748.1| - 0.0019 18.4 3.7 0.11 12.7 1.0 2.3 2 0 0 2 2 2 1 Flagellar FliJ protein HTH_36 PF13730.6 gi|134046263|ref|YP_001097748.1| - 0.014 15.3 0.0 0.043 13.8 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain Cdc6_C PF09079.11 gi|134046263|ref|YP_001097748.1| - 0.051 13.5 0.1 0.17 11.9 0.1 1.9 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain Rio2_N PF09202.11 gi|134046263|ref|YP_001097748.1| - 0.061 13.5 0.4 0.44 10.8 0.0 2.5 2 0 0 2 2 2 0 Rio2, N-terminal UPF0242 PF06785.11 gi|134046263|ref|YP_001097748.1| - 0.066 13.3 18.3 0.17 12.0 18.3 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus HTH_29 PF13551.6 gi|134046263|ref|YP_001097748.1| - 0.08 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|134046263|ref|YP_001097748.1| - 0.087 12.7 0.0 0.35 10.7 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF501 PF04417.12 gi|134046263|ref|YP_001097748.1| - 0.22 11.4 0.2 1.3 8.8 0.0 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF501) HMMR_N PF15905.5 gi|134046263|ref|YP_001097748.1| - 0.26 10.7 18.6 0.41 10.1 18.6 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal I_LWEQ PF01608.17 gi|134046263|ref|YP_001097748.1| - 0.83 9.9 6.1 0.35 11.1 2.7 2.1 1 1 1 2 2 2 0 I/LWEQ domain Packaging_FI PF14000.6 gi|134046263|ref|YP_001097748.1| - 1.4 9.4 6.6 0.61 10.6 1.8 2.4 1 1 0 2 2 2 0 DNA packaging protein FI Atg14 PF10186.9 gi|134046263|ref|YP_001097748.1| - 4.7 6.2 11.8 6.7 5.7 11.8 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc7 PF08317.11 gi|134046263|ref|YP_001097748.1| - 8.9 5.1 23.9 0.52 9.1 17.4 2.0 2 1 0 2 2 2 0 Spc7 kinetochore protein Meth_synt_2 PF01717.18 gi|134046264|ref|YP_001097749.1| - 4.7e-44 151.0 0.0 1.4e-43 149.5 0.0 1.6 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|134046264|ref|YP_001097749.1| - 0.0097 15.5 0.1 0.022 14.3 0.1 1.5 1 1 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|134046264|ref|YP_001097749.1| - 0.065 12.4 0.1 0.12 11.5 0.1 1.4 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) MHC_II_alpha PF00993.20 gi|134046264|ref|YP_001097749.1| - 0.1 12.3 0.1 6.5 6.5 0.0 2.6 2 0 0 2 2 2 0 Class II histocompatibility antigen, alpha domain DUF5612 PF18462.1 gi|134046265|ref|YP_001097750.1| - 4.9e-73 243.6 4.5 7.8e-73 243.0 4.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|134046265|ref|YP_001097750.1| - 5.9e-10 38.8 0.3 6.7e-09 35.4 0.1 2.3 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|134046265|ref|YP_001097750.1| - 5.6e-05 23.7 0.3 0.00017 22.1 0.3 1.9 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|134046265|ref|YP_001097750.1| - 8e-05 22.5 0.0 0.00015 21.6 0.0 1.5 1 0 0 1 1 1 1 ACT domain DUF2129 PF09902.9 gi|134046265|ref|YP_001097750.1| - 0.041 13.9 0.1 0.081 13.0 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2129) Peptidase_M48 PF01435.18 gi|134046266|ref|YP_001097751.1| - 2.1e-42 145.1 0.1 2.9e-42 144.7 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|134046266|ref|YP_001097751.1| - 9.9e-07 28.2 0.1 2e-06 27.3 0.0 1.5 2 0 0 2 2 2 1 BlaR1 peptidase M56 DUF2207 PF09972.9 gi|134046266|ref|YP_001097751.1| - 0.86 8.3 4.7 5.9 5.5 0.0 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) GHMP_kinases_N PF00288.26 gi|134046267|ref|YP_001097752.1| - 4e-06 27.0 0.0 7.9e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|134046267|ref|YP_001097752.1| - 0.0054 17.1 0.0 0.011 16.0 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal tRNA-synt_2c PF01411.19 gi|134046268|ref|YP_001097753.1| - 5.9e-138 460.8 1.1 5.9e-138 460.8 1.1 1.5 2 0 0 2 2 2 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|134046268|ref|YP_001097753.1| - 7.1e-13 48.4 0.7 1.5e-12 47.4 0.7 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|134046268|ref|YP_001097753.1| - 1e-09 38.9 5.1 2.8e-09 37.5 1.5 2.7 2 0 0 2 2 2 1 DHHA1 domain tRNA-synt_2e PF02091.15 gi|134046268|ref|YP_001097753.1| - 1.3e-05 24.6 0.1 2.7e-05 23.6 0.1 1.4 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Enolase_C PF00113.22 gi|134046269|ref|YP_001097754.1| - 5e-125 416.6 0.8 6.4e-125 416.3 0.8 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|134046269|ref|YP_001097754.1| - 5.1e-56 188.5 0.5 9.4e-56 187.6 0.5 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|134046269|ref|YP_001097754.1| - 4.1e-05 23.3 0.0 6e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|134046269|ref|YP_001097754.1| - 0.072 12.2 0.2 0.22 10.6 0.0 1.9 2 0 0 2 2 2 0 Methylaspartate ammonia-lyase C-terminus DUF4618 PF15397.6 gi|134046270|ref|YP_001097755.1| - 0.005 16.3 0.4 0.0094 15.4 0.4 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4618) IL2 PF00715.17 gi|134046270|ref|YP_001097755.1| - 0.021 14.7 0.2 0.022 14.7 0.2 1.0 1 0 0 1 1 1 0 Interleukin 2 HEM4 PF02602.15 gi|134046271|ref|YP_001097756.1| - 2.3e-35 122.1 0.0 2.7e-35 121.8 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD RnlA_toxin PF15935.5 gi|134046271|ref|YP_001097756.1| - 0.024 14.5 1.5 0.046 13.5 0.0 2.1 2 1 1 3 3 3 0 RNase LS, bacterial toxin Metallophos_2 PF12850.7 gi|134046272|ref|YP_001097757.1| - 1.4e-34 119.7 0.3 1.6e-34 119.5 0.3 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|134046272|ref|YP_001097757.1| - 1.9e-09 38.3 8.3 1.6e-07 32.0 8.3 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|134046272|ref|YP_001097757.1| - 3e-06 26.8 0.8 0.00021 20.7 0.1 2.3 1 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily GARS_A PF01071.19 gi|134046273|ref|YP_001097758.1| - 7.6e-61 205.3 0.1 1.5e-60 204.3 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|134046273|ref|YP_001097758.1| - 2.8e-23 82.5 0.8 4.4e-22 78.7 0.1 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|134046273|ref|YP_001097758.1| - 3.1e-13 49.8 0.1 1.2e-12 47.9 0.0 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.6 gi|134046273|ref|YP_001097758.1| - 6.5e-05 22.6 0.1 0.00097 18.8 0.1 2.4 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|134046273|ref|YP_001097758.1| - 0.00078 19.5 0.0 0.0032 17.5 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|134046273|ref|YP_001097758.1| - 0.039 13.5 0.1 0.091 12.2 0.0 1.6 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|134046273|ref|YP_001097758.1| - 0.05 12.9 0.0 0.16 11.2 0.1 1.8 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Aminotran_5 PF00266.19 gi|134046274|ref|YP_001097759.1| - 5.1e-42 144.1 0.0 6.4e-42 143.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DUF4092 PF13322.6 gi|134046274|ref|YP_001097759.1| - 0.01 15.7 0.1 0.027 14.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4092) UPF0228 PF05727.11 gi|134046274|ref|YP_001097759.1| - 0.017 14.9 1.9 0.41 10.5 0.7 3.0 2 2 0 2 2 2 0 Uncharacterised protein family (UPF0228) NTPase_I-T PF01931.18 gi|134046275|ref|YP_001097760.1| - 5e-49 166.2 0.0 5.8e-49 166.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Fer4 PF00037.27 gi|134046276|ref|YP_001097761.1| - 4.9e-14 51.5 14.1 1e-08 34.6 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134046276|ref|YP_001097761.1| - 6.9e-09 35.3 12.4 1.3e-05 24.9 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134046276|ref|YP_001097761.1| - 1e-08 35.1 10.7 1.2e-08 35.0 10.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134046276|ref|YP_001097761.1| - 1.3e-08 34.5 12.1 7.5e-06 25.8 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134046276|ref|YP_001097761.1| - 6.5e-08 33.1 24.7 2.3e-07 31.3 12.9 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134046276|ref|YP_001097761.1| - 1.8e-07 32.0 10.7 0.0014 19.6 3.0 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|134046276|ref|YP_001097761.1| - 8.6e-06 25.8 13.7 0.0012 19.0 3.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134046276|ref|YP_001097761.1| - 3.6e-05 23.8 23.3 0.00015 21.9 12.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134046276|ref|YP_001097761.1| - 0.00034 21.0 15.1 0.012 16.0 4.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134046276|ref|YP_001097761.1| - 0.0026 18.2 13.2 0.1 13.1 3.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134046276|ref|YP_001097761.1| - 0.003 18.3 5.2 0.51 11.1 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|134046276|ref|YP_001097761.1| - 0.0098 16.3 3.7 0.0098 16.3 3.7 2.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|134046276|ref|YP_001097761.1| - 0.017 16.0 19.8 0.02 15.8 7.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|134046276|ref|YP_001097761.1| - 0.2 12.2 11.6 0.64 10.6 3.2 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|134046276|ref|YP_001097761.1| - 0.33 11.2 12.9 0.34 11.1 3.0 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain FAD_binding_3 PF01494.19 gi|134046277|ref|YP_001097762.1| - 7.7e-16 58.3 0.2 1.9e-05 24.1 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain HI0933_like PF03486.14 gi|134046277|ref|YP_001097762.1| - 9.8e-10 37.7 0.8 9.6e-08 31.1 0.0 2.7 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.7 gi|134046277|ref|YP_001097762.1| - 1.5e-08 34.5 0.4 4.7e-08 32.8 0.1 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|134046277|ref|YP_001097762.1| - 1e-07 31.4 0.0 0.00049 19.3 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|134046277|ref|YP_001097762.1| - 7.4e-07 28.6 0.2 1.5e-06 27.6 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|134046277|ref|YP_001097762.1| - 1.3e-06 27.8 0.3 4.3e-06 26.1 0.0 1.9 3 0 0 3 3 3 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|134046277|ref|YP_001097762.1| - 2.9e-06 26.7 5.4 0.00015 21.1 0.1 2.7 2 2 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|134046277|ref|YP_001097762.1| - 6.4e-06 25.3 0.0 0.036 12.9 0.0 2.3 2 1 0 2 2 2 2 Tryptophan halogenase DAO PF01266.24 gi|134046277|ref|YP_001097762.1| - 1.5e-05 24.8 0.0 0.0031 17.2 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|134046277|ref|YP_001097762.1| - 1.5e-05 25.1 0.0 4.1e-05 23.7 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|134046277|ref|YP_001097762.1| - 4.2e-05 23.0 1.3 0.03 13.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|134046277|ref|YP_001097762.1| - 4.8e-05 22.7 0.1 0.00031 20.1 0.0 2.1 2 0 0 2 2 2 1 Thi4 family LOR PF04525.12 gi|134046277|ref|YP_001097762.1| - 0.055 13.1 0.3 0.089 12.4 0.3 1.2 1 0 0 1 1 1 0 LURP-one-related C_GCAxxG_C_C PF09719.10 gi|134046277|ref|YP_001097762.1| - 0.1 12.9 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Putative redox-active protein (C_GCAxxG_C_C) Pyr_redox PF00070.27 gi|134046277|ref|YP_001097762.1| - 0.11 13.1 0.3 1.3 9.7 0.0 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|134046277|ref|YP_001097762.1| - 0.12 12.3 0.1 4.3 7.3 0.0 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding Peptidase_S24 PF00717.23 gi|134046278|ref|YP_001097763.1| - 0.00023 21.0 0.5 0.0013 18.7 0.2 2.2 2 0 0 2 2 2 1 Peptidase S24-like CBFD_NFYB_HMF PF00808.23 gi|134046279|ref|YP_001097764.1| - 1.3e-20 73.4 2.8 1.4e-20 73.3 2.8 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|134046279|ref|YP_001097764.1| - 8.8e-11 42.3 0.5 9.3e-11 42.2 0.5 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|134046279|ref|YP_001097764.1| - 9.5e-07 28.9 0.3 9.7e-07 28.9 0.3 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|134046279|ref|YP_001097764.1| - 2.7e-06 27.7 0.2 3.3e-06 27.4 0.2 1.2 1 0 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 gi|134046279|ref|YP_001097764.1| - 1e-05 25.6 0.1 1.1e-05 25.5 0.1 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TAF PF02969.17 gi|134046279|ref|YP_001097764.1| - 1.5e-05 25.0 1.2 1.5e-05 25.0 1.2 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) Bromo_TP PF07524.13 gi|134046279|ref|YP_001097764.1| - 0.001 19.0 0.0 0.0012 18.8 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated TFIID_20kDa PF03847.13 gi|134046279|ref|YP_001097764.1| - 0.0014 19.1 0.6 0.0015 19.0 0.6 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.16 gi|134046279|ref|YP_001097764.1| - 0.0054 16.7 0.1 0.0056 16.7 0.1 1.2 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit Rap1a PF18602.1 gi|134046279|ref|YP_001097764.1| - 0.03 14.7 0.1 0.053 13.8 0.1 1.4 1 0 0 1 1 1 0 Rap1a immunity proteins MU2_FHA PF18221.1 gi|134046279|ref|YP_001097764.1| - 0.035 14.1 0.1 0.038 14.0 0.1 1.2 1 0 0 1 1 1 0 Mutator 2 Fork head associated domain AA_kinase PF00696.28 gi|134046280|ref|YP_001097765.1| - 1.6e-29 103.2 3.5 6.5e-29 101.2 3.5 1.8 1 1 0 1 1 1 1 Amino acid kinase family B12-binding PF02310.19 gi|134046280|ref|YP_001097765.1| - 0.041 13.9 0.1 4.9 7.2 0.0 2.4 2 0 0 2 2 2 0 B12 binding domain Mur_ligase_C PF02875.21 gi|134046280|ref|YP_001097765.1| - 0.05 13.9 0.1 1.5 9.1 0.0 2.6 2 1 0 2 2 2 0 Mur ligase family, glutamate ligase domain PFK PF00365.20 gi|134046280|ref|YP_001097765.1| - 0.056 12.8 0.1 0.081 12.2 0.1 1.6 1 1 0 1 1 1 0 Phosphofructokinase DUF2116 PF09889.9 gi|134046281|ref|YP_001097766.1| - 1.7e-29 101.5 2.8 1.9e-29 101.4 2.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF5345 PF17280.2 gi|134046281|ref|YP_001097766.1| - 0.00087 19.2 0.1 0.00096 19.1 0.1 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5345) zinc_ribbon_2 PF13240.6 gi|134046281|ref|YP_001097766.1| - 0.0059 16.3 0.8 0.0059 16.3 0.8 1.4 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|134046281|ref|YP_001097766.1| - 0.0091 16.0 2.0 0.018 15.0 1.9 1.5 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|134046281|ref|YP_001097766.1| - 0.029 13.8 2.1 0.074 12.5 2.1 1.7 1 1 1 2 2 2 0 zinc-ribbon domain zf-FCS PF06467.14 gi|134046281|ref|YP_001097766.1| - 0.63 10.0 7.4 42 4.2 7.4 2.2 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif S_layer_N PF05123.12 gi|134046282|ref|YP_001097767.1| - 1e-85 288.1 24.9 1e-85 288.1 24.9 2.5 2 1 1 3 3 3 1 S-layer like family, N-terminal region S_layer_C PF05124.12 gi|134046282|ref|YP_001097767.1| - 9.1e-65 218.7 12.2 9.1e-65 218.7 12.2 2.3 2 1 0 3 3 3 1 S-layer like family, C-terminal region S-layer PF07752.11 gi|134046282|ref|YP_001097767.1| - 1.5e-05 24.2 1.4 1.5e-05 24.2 1.4 2.0 2 0 0 2 2 2 1 S-layer protein ABC_tran PF00005.27 gi|134046283|ref|YP_001097768.1| - 8.2e-38 130.0 4.9 1.1e-19 71.3 0.1 3.1 3 1 0 3 3 2 2 ABC transporter AAA_21 PF13304.6 gi|134046283|ref|YP_001097768.1| - 2.7e-14 53.7 6.2 0.0014 18.5 1.4 4.3 2 2 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|134046283|ref|YP_001097768.1| - 3.5e-13 49.5 4.5 9.2e-07 28.5 0.0 3.6 2 1 1 4 4 3 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|134046283|ref|YP_001097768.1| - 3.2e-11 42.9 1.2 6.2e-11 41.9 1.2 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_23 PF13476.6 gi|134046283|ref|YP_001097768.1| - 4.1e-10 40.5 1.3 0.00048 20.7 0.1 2.6 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|134046283|ref|YP_001097768.1| - 7.5e-08 32.0 1.3 0.0029 17.3 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain Fer4 PF00037.27 gi|134046283|ref|YP_001097768.1| - 8.1e-07 28.6 2.6 8.1e-07 28.6 2.6 2.6 3 0 0 3 3 2 1 4Fe-4S binding domain AAA PF00004.29 gi|134046283|ref|YP_001097768.1| - 8.8e-07 29.4 0.2 0.04 14.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|134046283|ref|YP_001097768.1| - 1e-06 28.8 1.3 0.0029 17.5 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase Rad17 PF03215.15 gi|134046283|ref|YP_001097768.1| - 8.7e-06 25.8 0.0 0.075 12.9 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_18 PF13238.6 gi|134046283|ref|YP_001097768.1| - 2.4e-05 24.9 0.6 0.018 15.6 0.1 3.1 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|134046283|ref|YP_001097768.1| - 4.2e-05 23.2 0.0 0.37 10.3 0.0 2.7 3 0 0 3 3 3 2 AAA domain MMR_HSR1 PF01926.23 gi|134046283|ref|YP_001097768.1| - 4.2e-05 23.6 0.7 0.18 11.9 0.0 2.9 2 1 0 2 2 2 2 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|134046283|ref|YP_001097768.1| - 7.4e-05 22.6 0.7 0.11 12.1 0.1 2.6 2 0 0 2 2 2 2 AAA ATPase domain AAA_24 PF13479.6 gi|134046283|ref|YP_001097768.1| - 8.1e-05 22.4 0.3 0.13 12.0 0.1 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|134046283|ref|YP_001097768.1| - 8.2e-05 23.1 0.0 0.15 12.4 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain Fer4_10 PF13237.6 gi|134046283|ref|YP_001097768.1| - 0.00011 22.2 10.0 0.0024 18.0 1.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain RNA_helicase PF00910.22 gi|134046283|ref|YP_001097768.1| - 0.00011 22.5 0.1 0.85 10.0 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_30 PF13604.6 gi|134046283|ref|YP_001097768.1| - 0.00016 21.5 0.0 0.35 10.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain Fer4_6 PF12837.7 gi|134046283|ref|YP_001097768.1| - 0.00028 20.8 11.7 0.0018 18.3 1.7 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain NTPase_1 PF03266.15 gi|134046283|ref|YP_001097768.1| - 0.0014 18.5 2.6 0.2 11.6 0.1 3.0 3 0 0 3 3 2 1 NTPase AAA_14 PF13173.6 gi|134046283|ref|YP_001097768.1| - 0.0023 18.0 0.3 2.3 8.2 0.1 2.9 2 1 0 2 2 2 1 AAA domain Fer4_21 PF14697.6 gi|134046283|ref|YP_001097768.1| - 0.0026 17.8 6.5 0.0044 17.1 6.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_33 PF13671.6 gi|134046283|ref|YP_001097768.1| - 0.0033 17.6 0.3 1.7 8.8 0.2 2.9 2 1 0 2 2 2 1 AAA domain Fer4_2 PF12797.7 gi|134046283|ref|YP_001097768.1| - 0.0038 17.2 1.2 0.0038 17.2 1.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_5 PF07728.14 gi|134046283|ref|YP_001097768.1| - 0.0041 17.1 0.1 4.2 7.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|134046283|ref|YP_001097768.1| - 0.0047 17.2 0.9 2.5 8.3 0.1 2.6 3 0 0 3 3 2 1 AAA domain Fer4_9 PF13187.6 gi|134046283|ref|YP_001097768.1| - 0.0054 16.9 8.9 0.011 15.9 8.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain RuvB_N PF05496.12 gi|134046283|ref|YP_001097768.1| - 0.0066 16.2 0.2 2 8.1 0.0 3.2 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 gi|134046283|ref|YP_001097768.1| - 0.0098 16.2 0.1 1.1 9.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain Roc PF08477.13 gi|134046283|ref|YP_001097768.1| - 0.011 16.0 0.1 4.8 7.4 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|134046283|ref|YP_001097768.1| - 0.012 15.4 0.5 3.6 7.3 0.1 2.6 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein NACHT PF05729.12 gi|134046283|ref|YP_001097768.1| - 0.012 15.5 1.4 0.29 11.0 0.1 2.4 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.17 gi|134046283|ref|YP_001097768.1| - 0.015 15.0 0.7 3.9 7.2 0.2 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein Fer4_7 PF12838.7 gi|134046283|ref|YP_001097768.1| - 0.015 15.8 8.1 0.052 14.1 8.3 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_22 PF13401.6 gi|134046283|ref|YP_001097768.1| - 0.019 15.2 0.2 7.1 6.9 0.0 2.6 2 1 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|134046283|ref|YP_001097768.1| - 0.022 14.8 0.2 0.82 9.7 0.1 2.6 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MukB PF04310.12 gi|134046283|ref|YP_001097768.1| - 0.032 14.0 0.2 3.8 7.3 0.0 2.5 2 0 0 2 2 2 0 MukB N-terminal KAP_NTPase PF07693.14 gi|134046283|ref|YP_001097768.1| - 0.034 13.4 0.0 1.3 8.2 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain MeaB PF03308.16 gi|134046283|ref|YP_001097768.1| - 0.036 13.1 2.4 2 7.3 0.1 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_7 PF12775.7 gi|134046283|ref|YP_001097768.1| - 0.047 13.2 0.1 7.1 6.1 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region Dynamin_N PF00350.23 gi|134046283|ref|YP_001097768.1| - 0.052 13.6 0.4 11 6.1 0.1 2.4 2 0 0 2 2 2 0 Dynamin family VirE PF05272.11 gi|134046283|ref|YP_001097768.1| - 0.064 13.0 0.0 2.1 8.0 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E SRP54 PF00448.22 gi|134046283|ref|YP_001097768.1| - 0.091 12.4 2.1 1.7 8.2 0.1 2.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Septin PF00735.18 gi|134046283|ref|YP_001097768.1| - 0.12 11.6 0.2 13 5.0 0.0 2.2 2 0 0 2 2 2 0 Septin Peptidase_G2 PF11962.8 gi|134046283|ref|YP_001097768.1| - 0.12 11.7 0.1 0.21 10.9 0.1 1.3 1 0 0 1 1 1 0 Peptidase_G2, IMC autoproteolytic cleavage domain Mg_chelatase PF01078.21 gi|134046283|ref|YP_001097768.1| - 0.13 11.6 0.0 9.8 5.5 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_27 PF13514.6 gi|134046283|ref|YP_001097768.1| - 0.14 11.7 0.1 7.2 6.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|134046283|ref|YP_001097768.1| - 0.31 10.2 3.4 6.2 5.9 0.4 2.5 2 0 0 2 2 2 0 NB-ARC domain ABC_ATPase PF09818.9 gi|134046283|ref|YP_001097768.1| - 0.34 9.6 6.4 4.5 5.9 0.0 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Fer4_16 PF13484.6 gi|134046283|ref|YP_001097768.1| - 0.62 11.0 8.6 0.28 12.2 2.1 2.4 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Aconitase_C PF00694.19 gi|134046284|ref|YP_001097769.1| - 6.7e-22 78.2 0.0 4.2e-21 75.7 0.0 2.0 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|134046284|ref|YP_001097769.1| - 0.00049 19.8 0.0 0.019 14.6 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus DNA_pol_B PF00136.21 gi|134046285|ref|YP_001097770.1| - 3.8e-74 250.1 4.7 3.8e-74 250.1 4.7 1.8 2 0 0 2 2 2 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|134046285|ref|YP_001097770.1| - 3e-48 164.7 20.0 2.5e-47 161.6 20.0 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|134046285|ref|YP_001097770.1| - 1.1e-09 38.5 0.6 1.1e-09 38.5 0.6 2.7 1 1 1 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|134046285|ref|YP_001097770.1| - 2.1e-05 24.3 0.4 5.6e-05 22.9 0.4 1.7 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB UPF0167 PF03691.14 gi|134046285|ref|YP_001097770.1| - 0.0045 16.8 0.9 0.021 14.6 0.9 2.1 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0167) Utp13 PF08625.11 gi|134046285|ref|YP_001097770.1| - 0.15 11.9 1.4 0.93 9.4 0.2 2.5 2 0 0 2 2 2 0 Utp13 specific WD40 associated domain PD-C2-AF1 PF09310.10 gi|134046285|ref|YP_001097770.1| - 0.19 11.1 0.1 0.58 9.5 0.0 1.8 2 0 0 2 2 2 0 POU domain, class 2, associating factor 1 GGACT PF06094.12 gi|134046286|ref|YP_001097771.1| - 4.1e-08 33.8 0.1 4.6e-08 33.7 0.1 1.0 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like AgI_II_C2 PF17998.1 gi|134046286|ref|YP_001097771.1| - 0.035 14.4 0.2 0.042 14.2 0.2 1.1 1 0 0 1 1 1 0 Cell surface antigen I/II C2 terminal domain Amidohydro_1 PF01979.20 gi|134046287|ref|YP_001097772.1| - 3.3e-55 187.8 0.3 8.9e-55 186.4 0.3 1.6 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|134046287|ref|YP_001097772.1| - 0.0002 20.8 0.0 0.00033 20.1 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase PHP_C PF13263.6 gi|134046288|ref|YP_001097773.1| - 1.8e-13 50.0 0.0 3.2e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 PHP-associated Tfb2_C PF18307.1 gi|134046288|ref|YP_001097773.1| - 0.079 13.4 0.0 0.26 11.7 0.0 1.9 2 0 0 2 2 2 0 Transcription factor Tfb2 (p52) C-terminal domain PHP PF02811.19 gi|134046288|ref|YP_001097773.1| - 0.11 12.8 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 PHP domain Lig_C PF18330.1 gi|134046289|ref|YP_001097774.1| - 7.6e-42 142.3 1.2 1.9e-41 141.0 1.2 1.7 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|134046289|ref|YP_001097774.1| - 2.8e-19 70.0 0.2 6.6e-19 68.8 0.2 1.6 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|134046289|ref|YP_001097774.1| - 1.2e-08 34.9 0.4 4.2e-08 33.1 0.4 1.9 1 1 0 1 1 1 1 ATP dependent DNA ligase domain DUF2104 PF09877.9 gi|134046290|ref|YP_001097775.1| - 0.081 13.2 3.9 0.84 9.9 3.8 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2104) CDP-OH_P_transf PF01066.21 gi|134046290|ref|YP_001097775.1| - 0.57 11.0 3.2 7.2 7.5 0.4 2.2 2 0 0 2 2 2 0 CDP-alcohol phosphatidyltransferase Polysacc_deac_1 PF01522.21 gi|134046292|ref|YP_001097777.1| - 5.1e-24 84.5 0.6 1e-23 83.6 0.6 1.5 1 1 0 1 1 1 1 Polysaccharide deacetylase FeoB_Cyto PF17910.1 gi|134046292|ref|YP_001097777.1| - 0.049 14.2 3.5 0.27 11.8 0.8 2.8 2 1 1 3 3 3 0 FeoB cytosolic helical domain Spore_III_AB PF09548.10 gi|134046292|ref|YP_001097777.1| - 0.13 12.4 1.5 0.38 10.8 1.1 2.1 1 1 1 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) MPTase-PolyVal PF18818.1 gi|134046293|ref|YP_001097778.1| - 1.6e-36 125.1 0.1 2.8e-36 124.3 0.1 1.4 1 0 0 1 1 1 1 Metallopeptidase superfamily domain DUF1738 PF08401.11 gi|134046293|ref|YP_001097778.1| - 5.8e-21 74.9 1.3 1.7e-20 73.4 0.1 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF1738) MTS PF05175.14 gi|134046293|ref|YP_001097778.1| - 4.5e-06 26.3 0.6 9.5e-06 25.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain N6_Mtase PF02384.16 gi|134046293|ref|YP_001097778.1| - 9.6e-06 25.1 0.1 0.67 9.2 0.0 3.5 1 1 2 3 3 3 3 N-6 DNA Methylase RrnaAD PF00398.20 gi|134046293|ref|YP_001097778.1| - 0.00028 20.0 0.4 0.00074 18.7 0.0 1.8 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|134046293|ref|YP_001097778.1| - 0.046 13.3 0.0 0.3 10.6 0.0 2.3 2 0 0 2 2 2 0 Methionine biosynthesis protein MetW Syntaxin-6_N PF09177.11 gi|134046293|ref|YP_001097778.1| - 0.38 11.3 3.4 2.5 8.7 0.3 3.2 3 0 0 3 3 3 0 Syntaxin 6, N-terminal V-SNARE PF05008.15 gi|134046293|ref|YP_001097778.1| - 1.1 9.7 7.3 5.5 7.5 0.1 3.7 3 0 0 3 3 3 0 Vesicle transport v-SNARE protein N-terminus SeqA_N PF17206.3 gi|134046294|ref|YP_001097779.1| - 0.12 11.7 1.1 0.15 11.4 1.1 1.2 1 0 0 1 1 1 0 SeqA protein N-terminal domain Cnn_1N PF07989.11 gi|134046295|ref|YP_001097780.1| - 0.039 14.1 12.8 0.16 12.1 12.8 2.1 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 DUF3244 PF11589.8 gi|134046297|ref|YP_001097782.1| - 9.6e-06 25.6 0.9 9.6e-06 25.6 0.9 5.4 4 1 1 5 5 5 3 Domain of unknown function (DUF3244) PEGA PF08308.11 gi|134046297|ref|YP_001097782.1| - 0.0044 16.9 5.5 0.066 13.1 0.0 4.8 6 0 0 6 6 6 1 PEGA domain PEGA PF08308.11 gi|134046298|ref|YP_001097783.1| - 1.2e-06 28.3 7.6 2.3e-05 24.2 2.0 2.4 1 1 1 2 2 2 2 PEGA domain CarboxypepD_reg PF13620.6 gi|134046298|ref|YP_001097783.1| - 0.049 13.9 0.1 0.049 13.9 0.1 2.6 3 1 0 3 3 3 0 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|134046298|ref|YP_001097783.1| - 0.12 12.4 8.6 0.078 13.0 0.9 2.4 2 1 0 2 2 2 0 CarboxypepD_reg-like domain PsbT PF01405.17 gi|134046299|ref|YP_001097784.1| - 0.036 13.9 0.1 0.14 12.0 0.1 2.0 1 0 0 1 1 1 0 Photosystem II reaction centre T protein DUF2644 PF10841.8 gi|134046299|ref|YP_001097784.1| - 7.5 6.9 10.5 0.087 13.1 1.4 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2644) AAA PF00004.29 gi|134046301|ref|YP_001097786.1| - 0.035 14.5 0.1 0.063 13.7 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zot PF05707.12 gi|134046301|ref|YP_001097786.1| - 0.081 12.6 0.0 0.23 11.1 0.0 1.7 1 1 1 2 2 2 0 Zonular occludens toxin (Zot) DUF4181 PF13789.6 gi|134046305|ref|YP_001097790.1| - 0.0076 16.5 2.0 0.0097 16.2 2.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4181) DUF3785 PF12653.7 gi|134046305|ref|YP_001097790.1| - 0.024 14.8 1.3 0.026 14.6 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3785) ThrE PF06738.12 gi|134046305|ref|YP_001097790.1| - 0.052 12.9 0.1 0.062 12.7 0.1 1.1 1 0 0 1 1 1 0 Putative threonine/serine exporter ABC2_membrane_3 PF12698.7 gi|134046305|ref|YP_001097790.1| - 1.7 7.7 6.1 2.4 7.2 6.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DEDD_Tnp_IS110 PF01548.17 gi|134046306|ref|YP_001097791.1| - 0.018 14.9 0.0 0.02 14.8 0.0 1.0 1 0 0 1 1 1 0 Transposase DEAD PF00270.29 gi|134046307|ref|YP_001097792.1| - 9.2e-26 90.7 0.0 2.2e-25 89.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|134046307|ref|YP_001097792.1| - 2.7e-14 53.5 0.0 5.7e-14 52.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|134046307|ref|YP_001097792.1| - 5.7e-08 33.1 0.4 1.3e-06 28.7 0.1 2.9 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|134046307|ref|YP_001097792.1| - 8e-06 25.6 0.0 3.2e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_5 PF14520.6 gi|134046307|ref|YP_001097792.1| - 2.3e-05 24.9 0.8 8.4e-05 23.1 0.8 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_4 PF14490.6 gi|134046307|ref|YP_001097792.1| - 0.005 16.8 0.1 0.017 15.1 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix containing domain Cdd1 PF11731.8 gi|134046307|ref|YP_001097792.1| - 0.006 16.8 0.1 0.026 14.8 0.0 2.1 2 0 0 2 2 2 1 Pathogenicity locus HHH PF00633.23 gi|134046307|ref|YP_001097792.1| - 0.0065 16.3 0.4 0.082 12.8 0.0 3.1 3 0 0 3 3 3 1 Helix-hairpin-helix motif SRP54_N PF02881.19 gi|134046307|ref|YP_001097792.1| - 0.019 15.1 0.1 0.12 12.6 0.1 2.4 1 0 0 1 1 1 0 SRP54-type protein, helical bundle domain IMS_HHH PF11798.8 gi|134046307|ref|YP_001097792.1| - 0.26 11.7 2.5 28 5.3 0.1 3.8 4 0 0 4 4 4 0 IMS family HHH motif TF_Zn_Ribbon PF08271.12 gi|134046308|ref|YP_001097793.1| - 0.022 14.3 2.2 0.055 13.0 2.2 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding RecR PF02132.15 gi|134046308|ref|YP_001097793.1| - 0.18 11.4 1.6 0.65 9.6 1.5 1.9 1 1 0 1 1 1 0 RecR protein zf_UBZ PF18439.1 gi|134046308|ref|YP_001097793.1| - 0.28 10.8 5.9 2.9 7.6 2.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-RING_7 PF02591.15 gi|134046308|ref|YP_001097793.1| - 0.47 10.7 0.1 0.47 10.7 0.1 2.0 2 0 0 2 2 2 0 C4-type zinc ribbon domain UPF0547 PF10571.9 gi|134046308|ref|YP_001097793.1| - 2.4 8.3 6.4 1.9 8.6 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 EssA PF10661.9 gi|134046310|ref|YP_001097795.1| - 0.0077 16.1 1.4 0.016 15.1 1.4 1.5 1 1 0 1 1 1 1 WXG100 protein secretion system (Wss), protein EssA Trep_dent_lipo PF09710.10 gi|134046310|ref|YP_001097795.1| - 0.0093 15.0 2.5 0.011 14.7 2.5 1.1 1 0 0 1 1 1 1 Treponema clustered lipoprotein (Trep_dent_lipo) FTA4 PF13093.6 gi|134046310|ref|YP_001097795.1| - 0.038 13.9 0.0 0.041 13.8 0.0 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 NigD_N PF12667.7 gi|134046311|ref|YP_001097796.1| - 0.065 13.4 0.1 0.15 12.2 0.0 1.6 1 1 0 1 1 1 0 NigD-like N-terminal OB domain DUF2080 PF09853.9 gi|134046312|ref|YP_001097797.1| - 1.5e-08 34.2 0.9 1.8e-08 34.0 0.9 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) TFIIE_alpha PF02002.17 gi|134046313|ref|YP_001097798.1| - 2.8e-06 27.1 1.7 3.4e-06 26.8 1.7 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_34 PF13601.6 gi|134046313|ref|YP_001097798.1| - 3.7e-05 23.8 0.3 7.1e-05 22.9 0.2 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|134046313|ref|YP_001097798.1| - 0.00011 22.1 0.6 0.00025 20.9 0.6 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|134046313|ref|YP_001097798.1| - 0.00052 19.9 0.1 0.00099 19.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|134046313|ref|YP_001097798.1| - 0.00071 20.0 0.1 0.0012 19.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|134046313|ref|YP_001097798.1| - 0.0042 16.9 0.3 0.0054 16.5 0.3 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.20 gi|134046313|ref|YP_001097798.1| - 0.092 12.6 0.9 0.16 11.9 0.9 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|134046313|ref|YP_001097798.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 MarR family SeqA PF03925.13 gi|134046315|ref|YP_001097800.1| - 0.032 14.2 0.2 2.5 8.1 0.0 2.3 2 0 0 2 2 2 0 SeqA protein C-terminal domain PaREP1 PF05942.11 gi|134046315|ref|YP_001097800.1| - 0.04 13.9 0.1 0.059 13.3 0.1 1.4 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family DUF2153 PF09921.9 gi|134046315|ref|YP_001097800.1| - 0.085 12.7 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2153) DUF4796 PF16044.5 gi|134046317|ref|YP_001097802.1| - 0.0097 15.5 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4796) DUF2203 PF09969.9 gi|134046317|ref|YP_001097802.1| - 0.037 14.8 0.1 0.056 14.2 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) ECF_trnsprt PF12822.7 gi|134046318|ref|YP_001097803.1| - 1e-08 35.5 28.1 1.4e-08 35.0 28.1 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component ECF-ribofla_trS PF07155.12 gi|134046318|ref|YP_001097803.1| - 9.2e-08 32.3 17.0 1.4e-07 31.7 17.0 1.3 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component 5TM-5TMR_LYT PF07694.12 gi|134046318|ref|YP_001097803.1| - 0.0044 16.6 16.7 0.0064 16.0 16.4 1.5 1 1 0 1 1 1 1 5TMR of 5TMR-LYT MarR PF01047.22 gi|134046321|ref|YP_001097806.1| - 1e-16 60.6 0.1 2.4e-16 59.4 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|134046321|ref|YP_001097806.1| - 9.2e-13 48.5 0.2 1.3e-12 48.0 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|134046321|ref|YP_001097806.1| - 6.1e-09 35.6 0.0 1.1e-08 34.8 0.0 1.5 2 0 0 2 2 1 1 MarR family HTH_34 PF13601.6 gi|134046321|ref|YP_001097806.1| - 2.9e-06 27.4 0.6 4.8e-06 26.7 0.6 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|134046321|ref|YP_001097806.1| - 8e-06 26.0 0.9 1.7e-05 24.9 0.9 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|134046321|ref|YP_001097806.1| - 1.8e-05 24.2 0.0 3.1e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|134046321|ref|YP_001097806.1| - 0.00028 20.7 1.1 0.00034 20.4 0.4 1.5 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB DIX PF00778.17 gi|134046321|ref|YP_001097806.1| - 0.00086 19.1 1.9 0.004 16.9 0.1 2.1 1 1 1 2 2 2 1 DIX domain LexA_DNA_bind PF01726.16 gi|134046321|ref|YP_001097806.1| - 0.0014 18.3 0.0 0.0037 17.0 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain HTH_11 PF08279.12 gi|134046321|ref|YP_001097806.1| - 0.0047 16.8 0.1 0.067 13.1 0.1 2.6 3 0 0 3 3 3 1 HTH domain CBM_35 PF16990.5 gi|134046321|ref|YP_001097806.1| - 0.0053 17.0 0.0 0.008 16.4 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate binding module (family 35) HxlR PF01638.17 gi|134046321|ref|YP_001097806.1| - 0.033 14.0 0.4 0.053 13.4 0.4 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Rrf2 PF02082.20 gi|134046321|ref|YP_001097806.1| - 0.036 14.4 0.1 0.092 13.1 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator Penicillinase_R PF03965.16 gi|134046321|ref|YP_001097806.1| - 0.039 14.3 1.4 0.095 13.1 0.4 1.9 1 1 0 2 2 2 0 Penicillinase repressor HTH_IclR PF09339.10 gi|134046321|ref|YP_001097806.1| - 0.044 13.6 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DED PF01335.21 gi|134046321|ref|YP_001097806.1| - 0.055 13.8 0.7 0.54 10.6 0.1 2.3 2 1 0 2 2 2 0 Death effector domain FeoC PF09012.10 gi|134046321|ref|YP_001097806.1| - 0.063 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator TaqI_C PF12950.7 gi|134046321|ref|YP_001097806.1| - 0.09 12.8 2.9 0.097 12.7 0.4 2.0 1 1 1 2 2 2 0 TaqI-like C-terminal specificity domain NPV_P10 PF05531.12 gi|134046321|ref|YP_001097806.1| - 0.44 11.1 1.5 2.6 8.6 0.5 2.5 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF3889 PF13028.6 gi|134046322|ref|YP_001097807.1| - 0.0091 15.9 0.2 0.013 15.4 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3889) DUF848 PF05852.11 gi|134046322|ref|YP_001097807.1| - 0.078 13.1 0.1 0.44 10.7 0.1 1.8 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) MCPsignal PF00015.21 gi|134046323|ref|YP_001097808.1| - 1.4e-31 109.6 15.0 1.4e-31 109.6 15.0 5.8 3 1 3 7 7 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain sCache_3_3 PF17202.4 gi|134046323|ref|YP_001097808.1| - 5.7e-29 100.7 2.4 2.8e-28 98.5 1.4 2.6 2 0 0 2 2 2 1 Single cache domain 3 Cache_3-Cache_2 PF17201.4 gi|134046323|ref|YP_001097808.1| - 1.7e-22 80.1 1.7 1.7e-22 80.1 1.7 3.9 2 2 0 3 3 3 1 Cache 3/Cache 2 fusion domain dCache_3 PF14827.6 gi|134046323|ref|YP_001097808.1| - 2.3e-19 70.0 1.1 2.3e-19 70.0 1.1 2.7 3 0 0 3 3 2 1 Double sensory domain of two-component sensor kinase HAMP PF00672.25 gi|134046323|ref|YP_001097808.1| - 2.2e-13 50.4 0.1 1.1e-08 35.4 0.0 4.3 4 0 0 4 4 2 2 HAMP domain DUF948 PF06103.11 gi|134046323|ref|YP_001097808.1| - 1e-07 32.1 37.5 0.014 15.6 3.0 6.9 1 1 2 5 5 5 2 Bacterial protein of unknown function (DUF948) sCache_3_2 PF17203.4 gi|134046323|ref|YP_001097808.1| - 0.00012 22.3 0.5 0.00012 22.3 0.5 4.6 4 1 1 5 5 4 1 Single cache domain 3 DUF2959 PF11172.8 gi|134046323|ref|YP_001097808.1| - 0.00019 21.6 26.6 1.1 9.4 11.1 5.4 3 1 1 5 5 5 3 Protein of unknown function (DUF2959) Collagen_mid PF15984.5 gi|134046323|ref|YP_001097808.1| - 0.0013 18.5 10.2 0.0063 16.3 4.5 3.9 3 1 1 4 4 4 2 Bacterial collagen, middle region DUF1664 PF07889.12 gi|134046323|ref|YP_001097808.1| - 0.0026 17.8 34.5 0.12 12.5 0.5 5.8 4 1 2 6 6 5 2 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 gi|134046323|ref|YP_001097808.1| - 0.01 16.0 5.7 0.01 16.0 5.7 5.4 3 2 3 6 6 6 0 Fibrinogen alpha/beta chain family WXG100 PF06013.12 gi|134046323|ref|YP_001097808.1| - 0.018 15.2 20.1 7.8 6.8 0.0 6.2 3 2 1 5 5 5 0 Proteins of 100 residues with WXG DASH_Dad1 PF08649.10 gi|134046323|ref|YP_001097808.1| - 0.018 15.2 0.1 0.018 15.2 0.1 5.2 7 1 0 7 7 3 0 DASH complex subunit Dad1 Mod_r PF07200.13 gi|134046323|ref|YP_001097808.1| - 0.023 14.8 17.7 1.2 9.2 0.6 4.0 3 1 1 4 4 3 0 Modifier of rudimentary (Mod(r)) protein Transcrip_act PF04949.13 gi|134046323|ref|YP_001097808.1| - 0.029 14.2 0.1 0.029 14.2 0.1 4.1 3 1 1 4 4 4 0 Transcriptional activator T3SSipB PF16535.5 gi|134046323|ref|YP_001097808.1| - 0.036 14.5 28.3 0.041 14.4 0.2 5.1 3 2 2 5 5 4 0 Type III cell invasion protein SipB Syntaxin-6_N PF09177.11 gi|134046323|ref|YP_001097808.1| - 0.047 14.2 28.3 0.99 10.0 1.5 5.4 3 1 3 6 6 5 0 Syntaxin 6, N-terminal Cep57_CLD_2 PF14197.6 gi|134046323|ref|YP_001097808.1| - 0.067 13.3 2.9 0.24 11.5 0.9 3.1 3 0 0 3 3 1 0 Centrosome localisation domain of PPC89 CENP-N PF05238.13 gi|134046323|ref|YP_001097808.1| - 0.071 12.4 4.2 0.23 10.7 4.3 1.7 2 0 0 2 2 2 0 Kinetochore protein CHL4 like ABC_membrane PF00664.23 gi|134046323|ref|YP_001097808.1| - 0.081 12.6 1.3 0.12 12.0 0.3 1.8 2 0 0 2 2 1 0 ABC transporter transmembrane region DUF4201 PF13870.6 gi|134046323|ref|YP_001097808.1| - 0.12 12.1 15.7 0.47 10.2 0.2 3.1 3 1 0 3 3 2 0 Domain of unknown function (DUF4201) DUF4407 PF14362.6 gi|134046323|ref|YP_001097808.1| - 0.14 11.5 31.6 1.1 8.5 4.0 3.3 1 1 3 4 4 4 0 Domain of unknown function (DUF4407) Spectrin PF00435.21 gi|134046323|ref|YP_001097808.1| - 0.14 12.6 20.8 1.7 9.2 5.2 5.1 2 1 2 5 5 5 0 Spectrin repeat HisKA PF00512.25 gi|134046323|ref|YP_001097808.1| - 0.15 12.1 4.2 22 5.2 0.0 4.2 4 1 0 4 4 4 0 His Kinase A (phospho-acceptor) domain DUF713 PF05218.14 gi|134046323|ref|YP_001097808.1| - 0.17 11.6 7.3 0.34 10.6 0.6 3.7 2 1 0 3 3 3 0 Protein of unknown function (DUF713) Flagellar_rod PF05149.12 gi|134046323|ref|YP_001097808.1| - 0.21 11.0 16.1 0.021 14.3 9.0 2.7 3 0 0 3 3 3 0 Paraflagellar rod protein HrpB7 PF09486.10 gi|134046323|ref|YP_001097808.1| - 0.27 11.6 17.5 0.16 12.4 7.5 3.3 2 1 1 3 3 3 0 Bacterial type III secretion protein (HrpB7) GARP PF16731.5 gi|134046323|ref|YP_001097808.1| - 0.32 10.7 37.3 0.21 11.2 6.6 4.0 2 2 0 3 3 3 0 Glutamic acid/alanine-rich protein of Trypanosoma COG2 PF06148.11 gi|134046323|ref|YP_001097808.1| - 0.39 10.8 25.6 2.6 8.1 0.3 5.4 2 2 4 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 IFT57 PF10498.9 gi|134046323|ref|YP_001097808.1| - 0.4 9.6 26.9 0.46 9.4 9.5 4.3 2 2 2 4 4 4 0 Intra-flagellar transport protein 57 Prominin PF05478.11 gi|134046323|ref|YP_001097808.1| - 0.43 8.5 27.5 0.01 13.9 12.3 3.3 2 1 1 3 3 3 0 Prominin APG6_N PF17675.1 gi|134046323|ref|YP_001097808.1| - 0.53 10.8 17.9 0.11 13.0 6.1 2.9 3 0 0 3 3 2 0 Apg6 coiled-coil region DUF3540 PF12059.8 gi|134046323|ref|YP_001097808.1| - 0.54 10.1 13.5 0.076 12.8 0.4 3.7 2 1 2 4 4 4 0 Protein of unknown function (DUF3540) RasGAP_C PF03836.15 gi|134046323|ref|YP_001097808.1| - 0.58 10.3 11.5 0.039 14.1 3.2 3.3 3 1 1 4 4 2 0 RasGAP C-terminus SlyX PF04102.12 gi|134046323|ref|YP_001097808.1| - 0.63 10.7 10.6 0.58 10.8 2.8 4.1 3 2 1 4 4 3 0 SlyX CALCOCO1 PF07888.11 gi|134046323|ref|YP_001097808.1| - 0.76 8.6 16.8 0.47 9.3 7.9 2.3 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like CREPT PF16566.5 gi|134046323|ref|YP_001097808.1| - 0.78 9.9 15.3 6.6 6.9 8.5 4.1 2 2 2 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour Phage_holin_6_1 PF09682.10 gi|134046323|ref|YP_001097808.1| - 0.89 10.0 33.2 0.11 12.9 4.7 6.2 4 2 2 7 7 5 0 Bacteriophage holin of superfamily 6 (Holin_LLH) CK2S PF15011.6 gi|134046323|ref|YP_001097808.1| - 1 9.2 9.1 7.6 6.4 0.0 3.2 3 1 0 3 3 3 0 Casein Kinase 2 substrate Fez1 PF06818.15 gi|134046323|ref|YP_001097808.1| - 1.1 9.6 14.2 1 9.7 7.1 2.7 2 0 0 2 2 2 0 Fez1 DUF3549 PF12069.8 gi|134046323|ref|YP_001097808.1| - 1.2 8.1 10.3 0.26 10.3 4.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3549) DUF812 PF05667.11 gi|134046323|ref|YP_001097808.1| - 1.2 7.9 31.6 3.1 6.6 19.6 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF812) DUF745 PF05335.13 gi|134046323|ref|YP_001097808.1| - 1.2 8.8 36.0 1.5 8.5 3.8 4.5 2 1 2 5 5 5 0 Protein of unknown function (DUF745) ISG65-75 PF11727.8 gi|134046323|ref|YP_001097808.1| - 1.3 8.2 33.1 0.93 8.7 3.2 3.8 1 1 3 4 4 4 0 Invariant surface glycoprotein ZapB PF06005.12 gi|134046323|ref|YP_001097808.1| - 1.8 9.1 19.3 14 6.2 0.7 4.9 3 1 1 4 4 4 0 Cell division protein ZapB Seryl_tRNA_N PF02403.22 gi|134046323|ref|YP_001097808.1| - 2 8.7 37.6 0.11 12.7 6.3 5.9 3 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain DUF3450 PF11932.8 gi|134046323|ref|YP_001097808.1| - 2.2 7.5 31.3 0.85 8.9 1.6 4.9 4 1 1 5 5 5 0 Protein of unknown function (DUF3450) GAS PF13851.6 gi|134046323|ref|YP_001097808.1| - 2.7 7.3 22.5 4.5 6.6 13.8 3.6 3 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding DUF3510 PF12022.8 gi|134046323|ref|YP_001097808.1| - 2.9 8.3 7.1 2.9 8.3 2.4 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3510) DUF16 PF01519.16 gi|134046323|ref|YP_001097808.1| - 4.2 7.9 28.1 3.9 8.0 6.9 5.8 2 1 1 5 5 5 0 Protein of unknown function DUF16 Laminin_I PF06008.14 gi|134046323|ref|YP_001097808.1| - 4.3 7.0 35.2 3.4 7.3 12.2 4.4 2 1 2 5 5 4 0 Laminin Domain I LemA PF04011.12 gi|134046323|ref|YP_001097808.1| - 4.3 7.2 18.5 1 9.2 6.0 4.2 2 1 2 4 4 4 0 LemA family V_ATPase_I PF01496.19 gi|134046323|ref|YP_001097808.1| - 4.5 5.1 13.8 1.2 7.0 6.3 2.6 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family FlaC_arch PF05377.11 gi|134046323|ref|YP_001097808.1| - 5.7 7.4 27.3 4.9 7.6 0.2 7.1 7 1 0 7 7 5 0 Flagella accessory protein C (FlaC) GCN5L1 PF06320.13 gi|134046323|ref|YP_001097808.1| - 8 6.6 21.5 3.7 7.7 8.6 4.6 4 1 1 5 5 4 0 GCN5-like protein 1 (GCN5L1) DUF2203 PF09969.9 gi|134046323|ref|YP_001097808.1| - 9.3 7.0 24.0 10 6.9 0.7 5.3 1 1 4 6 6 5 0 Uncharacterized conserved protein (DUF2203) DUF1043 PF06295.12 gi|134046323|ref|YP_001097808.1| - 9.4 6.3 11.7 9.8 6.2 5.1 3.0 2 1 1 3 3 2 0 Protein of unknown function (DUF1043) Occludin_ELL PF07303.13 gi|134046323|ref|YP_001097808.1| - 9.4 7.0 11.7 6 7.7 1.1 4.6 5 1 0 6 6 3 0 Occludin homology domain Phage_integrase PF00589.22 gi|134046324|ref|YP_001097809.1| - 2.3e-30 105.6 0.0 3.8e-30 104.9 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|134046324|ref|YP_001097809.1| - 3.8e-07 30.3 0.2 2.8e-06 27.5 0.0 2.4 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|134046324|ref|YP_001097809.1| - 1.6e-06 28.5 2.2 3.2e-06 27.5 0.9 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Cleaved_Adhesin PF07675.11 gi|134046324|ref|YP_001097809.1| - 0.024 14.6 0.0 0.049 13.6 0.0 1.5 1 0 0 1 1 1 0 Cleaved Adhesin Domain Phage_int_SAM_5 PF13102.6 gi|134046324|ref|YP_001097809.1| - 0.061 13.7 15.0 0.039 14.3 3.7 3.8 3 2 0 3 3 3 0 Phage integrase SAM-like domain Docking PF08990.11 gi|134046324|ref|YP_001097809.1| - 0.077 12.6 0.4 0.19 11.4 0.4 1.7 1 0 0 1 1 1 0 Erythronolide synthase docking Cohesin_load PF10345.9 gi|134046325|ref|YP_001097810.1| - 0.0018 16.8 0.5 0.0021 16.6 0.5 1.1 1 0 0 1 1 1 1 Cohesin loading factor Sec15 PF04091.12 gi|134046325|ref|YP_001097810.1| - 0.0034 16.9 0.4 0.0043 16.5 0.4 1.3 1 0 0 1 1 1 1 Exocyst complex subunit Sec15-like DUF3289 PF11692.8 gi|134046325|ref|YP_001097810.1| - 0.013 15.1 0.7 0.015 14.9 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3289) WAPL PF07814.13 gi|134046325|ref|YP_001097810.1| - 0.018 13.9 0.0 0.02 13.7 0.0 1.1 1 0 0 1 1 1 0 Wings apart-like protein regulation of heterochromatin DUF4083 PF13314.6 gi|134046325|ref|YP_001097810.1| - 0.054 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) PGK PF00162.19 gi|134046325|ref|YP_001097810.1| - 0.058 12.3 0.1 0.072 12.0 0.1 1.2 1 0 0 1 1 1 0 Phosphoglycerate kinase DUF4252 PF14060.6 gi|134046325|ref|YP_001097810.1| - 0.11 12.4 5.4 0.25 11.2 5.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4252) MannoseP_isomer PF01050.18 gi|134046326|ref|YP_001097811.1| - 5.1e-62 208.2 0.4 1.1e-61 207.2 0.4 1.6 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|134046326|ref|YP_001097811.1| - 1.5e-53 182.0 0.2 3.7e-53 180.6 0.0 1.7 2 0 0 2 2 2 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|134046326|ref|YP_001097811.1| - 1.1e-09 37.9 0.3 2.2e-09 36.9 0.3 1.6 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 gi|134046326|ref|YP_001097811.1| - 3.8e-09 37.1 0.0 5.9e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|134046326|ref|YP_001097811.1| - 0.059 13.1 0.0 0.092 12.5 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ID PF18543.1 gi|134046326|ref|YP_001097811.1| - 0.07 13.2 1.4 1.2 9.2 0.4 2.9 1 1 1 2 2 2 0 Intracellular delivery domain Radical_SAM PF04055.21 gi|134046327|ref|YP_001097812.1| - 2.1e-23 83.5 0.0 4e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|134046327|ref|YP_001097812.1| - 4.9e-05 23.5 0.2 0.00048 20.3 0.0 2.6 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|134046327|ref|YP_001097812.1| - 0.00081 19.7 1.0 0.005 17.1 0.0 2.4 2 1 0 2 2 2 1 4Fe-4S single cluster domain TRAM PF01938.20 gi|134046327|ref|YP_001097812.1| - 0.0062 16.5 1.2 0.014 15.4 1.2 1.6 1 0 0 1 1 1 1 TRAM domain DUF2935 PF11155.8 gi|134046327|ref|YP_001097812.1| - 0.22 11.9 1.2 6 7.2 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF2935) PIN_6 PF17146.4 gi|134046328|ref|YP_001097813.1| - 6.3e-14 52.2 0.0 1e-13 51.6 0.0 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|134046328|ref|YP_001097813.1| - 0.00031 20.2 0.4 0.00044 19.7 0.0 1.6 2 0 0 2 2 2 1 PINc domain ribonuclease Auto_anti-p27 PF06677.12 gi|134046328|ref|YP_001097813.1| - 0.063 13.4 1.4 0.066 13.4 0.0 1.7 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Orn_Arg_deC_N PF02784.16 gi|134046329|ref|YP_001097814.1| - 0.017 14.5 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DUF3646 PF12362.8 gi|134046329|ref|YP_001097814.1| - 0.028 14.7 0.1 0.043 14.1 0.0 1.4 2 0 0 2 2 2 0 DNA polymerase III gamma and tau subunits C terminal MTD PF01993.18 gi|134046330|ref|YP_001097815.1| - 1.7e-135 450.7 7.0 1.9e-135 450.5 7.0 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase UPF0126 PF03458.13 gi|134046331|ref|YP_001097816.1| - 3.4e-39 132.6 23.6 7.2e-21 73.9 4.4 2.4 3 0 0 3 3 3 2 UPF0126 domain Glycos_transf_2 PF00535.26 gi|134046332|ref|YP_001097817.1| - 1.6e-22 80.2 0.1 2e-22 79.8 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|134046332|ref|YP_001097817.1| - 6e-06 26.3 0.0 7.6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|134046332|ref|YP_001097817.1| - 0.0085 16.6 0.0 0.014 15.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF374 PF04028.13 gi|134046332|ref|YP_001097817.1| - 0.042 13.4 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF374) GDP_Man_Dehyd PF16363.5 gi|134046333|ref|YP_001097818.1| - 2.2e-131 438.2 0.0 2.5e-131 438.0 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|134046333|ref|YP_001097818.1| - 4.6e-64 216.2 0.0 5.5e-64 215.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|134046333|ref|YP_001097818.1| - 3.3e-10 39.6 0.0 4.3e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|134046333|ref|YP_001097818.1| - 7.1e-09 35.2 0.0 1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|134046333|ref|YP_001097818.1| - 2.1e-06 27.0 0.0 3.1e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|134046333|ref|YP_001097818.1| - 0.022 14.0 0.0 0.042 13.0 0.0 1.5 1 1 0 1 1 1 0 Male sterility protein Glycos_transf_1 PF00534.20 gi|134046334|ref|YP_001097819.1| - 2.3e-16 59.8 0.6 1.9e-09 37.3 0.1 2.5 3 0 0 3 3 3 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|134046334|ref|YP_001097819.1| - 1.2e-09 38.7 0.0 2.7e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|134046334|ref|YP_001097819.1| - 0.0017 18.7 0.0 0.0032 17.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|134046335|ref|YP_001097820.1| - 3.9e-16 59.7 0.0 7.5e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|134046335|ref|YP_001097820.1| - 2.9e-10 40.4 0.0 2.6e-09 37.3 0.0 2.5 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|134046335|ref|YP_001097820.1| - 5.6e-10 39.0 0.8 1.8e-09 37.3 0.3 2.1 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|134046335|ref|YP_001097820.1| - 1.3e-08 35.1 0.0 3e-08 33.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|134046335|ref|YP_001097820.1| - 0.0014 19.1 0.0 0.0051 17.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain DUF2206 PF09971.9 gi|134046336|ref|YP_001097821.1| - 3e-40 138.1 26.8 3e-40 138.1 26.8 2.7 3 1 1 4 4 4 1 Predicted membrane protein (DUF2206) DUF1616 PF07760.11 gi|134046336|ref|YP_001097821.1| - 0.00024 20.6 6.8 0.00054 19.4 6.8 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Glycos_transf_2 PF00535.26 gi|134046337|ref|YP_001097822.1| - 2.6e-23 82.7 0.5 8.6e-12 45.2 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|134046337|ref|YP_001097822.1| - 2.2e-14 53.9 0.0 3.7e-08 33.5 0.0 2.3 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|134046337|ref|YP_001097822.1| - 1.6e-08 34.2 0.0 3.3e-08 33.2 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|134046337|ref|YP_001097822.1| - 3.2e-06 27.2 0.0 1.8e-05 24.8 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|134046337|ref|YP_001097822.1| - 3.3e-05 23.5 1.1 0.011 15.2 0.4 2.9 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.14 gi|134046337|ref|YP_001097822.1| - 0.03 14.0 0.0 0.23 11.2 0.0 2.3 2 0 0 2 2 2 0 N-terminal domain of galactosyltransferase NTP_transferase PF00483.23 gi|134046337|ref|YP_001097822.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Polysacc_synt PF01943.17 gi|134046338|ref|YP_001097823.1| - 1.3e-35 123.2 41.3 1.3e-35 123.2 41.3 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|134046338|ref|YP_001097823.1| - 8.6e-19 67.8 27.1 8.6e-19 67.8 27.1 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|134046338|ref|YP_001097823.1| - 1.2e-15 57.8 19.1 1.2e-15 57.8 19.1 4.0 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|134046338|ref|YP_001097823.1| - 4.1e-08 33.0 16.1 4.1e-08 33.0 16.1 4.0 3 1 0 3 3 3 2 MatE UDPG_MGDP_dh_N PF03721.14 gi|134046339|ref|YP_001097824.1| - 1.3e-34 119.4 0.6 2.8e-34 118.3 0.6 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|134046339|ref|YP_001097824.1| - 7.4e-25 87.0 0.0 1.8e-24 85.8 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|134046339|ref|YP_001097824.1| - 4e-22 78.6 0.0 3.3e-21 75.7 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|134046339|ref|YP_001097824.1| - 4.8e-06 26.8 0.0 6.7e-05 23.1 0.0 2.7 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|134046339|ref|YP_001097824.1| - 3e-05 24.0 0.3 0.00016 21.6 0.0 2.3 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|134046339|ref|YP_001097824.1| - 0.0005 19.5 0.9 0.12 11.8 0.0 2.8 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|134046339|ref|YP_001097824.1| - 0.00055 19.6 0.0 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|134046339|ref|YP_001097824.1| - 0.00092 19.2 0.0 0.23 11.4 0.0 2.4 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|134046339|ref|YP_001097824.1| - 0.0021 18.6 2.5 0.5 11.0 0.1 3.2 4 0 0 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent RmlD_sub_bind PF04321.17 gi|134046340|ref|YP_001097825.1| - 9.1e-61 205.5 0.0 1.2e-60 205.1 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|134046340|ref|YP_001097825.1| - 1.7e-16 60.4 0.1 2.2e-16 60.1 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|134046340|ref|YP_001097825.1| - 4.3e-11 42.5 0.7 3e-10 39.7 0.7 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|134046340|ref|YP_001097825.1| - 1.1e-10 41.4 0.1 2.2e-10 40.5 0.1 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|134046340|ref|YP_001097825.1| - 4.4e-07 29.3 0.1 2.5e-06 26.9 0.1 2.0 1 1 0 1 1 1 1 Male sterility protein Sacchrp_dh_NADP PF03435.18 gi|134046340|ref|YP_001097825.1| - 1.7e-05 25.1 0.1 3.4e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3Beta_HSD PF01073.19 gi|134046340|ref|YP_001097825.1| - 0.0034 16.4 0.6 0.0047 16.0 0.6 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Shikimate_DH PF01488.20 gi|134046340|ref|YP_001097825.1| - 0.008 16.2 0.0 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|134046340|ref|YP_001097825.1| - 0.022 15.2 0.1 0.22 12.0 0.1 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|134046340|ref|YP_001097825.1| - 0.084 13.5 0.1 0.32 11.6 0.1 2.0 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GDP_Man_Dehyd PF16363.5 gi|134046341|ref|YP_001097826.1| - 3.7e-81 273.1 0.0 4.2e-81 272.9 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|134046341|ref|YP_001097826.1| - 4.2e-63 213.0 0.0 5.1e-63 212.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|134046341|ref|YP_001097826.1| - 8.5e-26 90.6 0.0 1.1e-25 90.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|134046341|ref|YP_001097826.1| - 5.3e-20 71.7 0.0 2.6e-19 69.5 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|134046341|ref|YP_001097826.1| - 6.9e-18 64.7 0.0 8e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|134046341|ref|YP_001097826.1| - 3.2e-15 56.0 0.0 1.5e-13 50.5 0.0 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|134046341|ref|YP_001097826.1| - 7.4e-08 32.5 0.0 1.2e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|134046341|ref|YP_001097826.1| - 1.4e-05 24.6 0.1 0.00073 19.0 0.0 2.4 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|134046341|ref|YP_001097826.1| - 3.7e-05 23.7 0.0 5.4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 KR domain NmrA PF05368.13 gi|134046341|ref|YP_001097826.1| - 0.00027 20.6 0.0 0.00041 20.0 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 gi|134046341|ref|YP_001097826.1| - 0.007 16.6 0.0 0.016 15.5 0.0 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Ldh_1_N PF00056.23 gi|134046341|ref|YP_001097826.1| - 0.024 14.7 0.1 0.04 14.0 0.1 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|134046341|ref|YP_001097826.1| - 0.05 13.7 0.0 0.092 12.9 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NTP_transferase PF00483.23 gi|134046342|ref|YP_001097827.1| - 5.4e-61 206.3 0.0 7.9e-61 205.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|134046342|ref|YP_001097827.1| - 8.7e-09 35.9 0.0 1.1e-08 35.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|134046342|ref|YP_001097827.1| - 0.0035 17.3 0.0 0.0058 16.6 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase dTDP_sugar_isom PF00908.17 gi|134046343|ref|YP_001097828.1| - 1.1e-73 246.4 0.0 1.3e-73 246.3 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase CW_binding_2 PF04122.12 gi|134046345|ref|YP_001097830.1| - 4.1e-08 33.7 8.1 0.00024 21.7 0.4 4.4 4 1 1 5 5 5 2 Putative cell wall binding repeat 2 NAD_binding_2 PF03446.15 gi|134046345|ref|YP_001097830.1| - 0.04 14.1 7.4 0.32 11.2 0.0 3.6 3 1 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF374 PF04028.13 gi|134046345|ref|YP_001097830.1| - 0.069 12.7 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF374) IMUP PF15761.5 gi|134046345|ref|YP_001097830.1| - 0.75 10.5 10.5 0.36 11.5 8.0 1.7 2 0 0 2 2 2 0 Immortalisation up-regulated protein Shisa PF13908.6 gi|134046345|ref|YP_001097830.1| - 1.8 8.8 5.6 4 7.6 5.6 1.5 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator DUF3408 PF11888.8 gi|134046345|ref|YP_001097830.1| - 3.1 7.9 6.2 0.86 9.7 2.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3408) Macoilin PF09726.9 gi|134046345|ref|YP_001097830.1| - 3.4 6.1 6.9 5.6 5.4 6.9 1.3 1 0 0 1 1 1 0 Macoilin family SR-25 PF10500.9 gi|134046345|ref|YP_001097830.1| - 3.6 7.1 17.9 5.8 6.5 17.9 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein TraG-D_C PF12696.7 gi|134046345|ref|YP_001097830.1| - 6 6.9 9.4 20 5.2 9.4 1.9 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG DUF1616 PF07760.11 gi|134046346|ref|YP_001097831.1| - 3e-25 89.2 0.1 3.1e-25 89.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) SusF_SusE PF16411.5 gi|134046346|ref|YP_001097831.1| - 0.068 13.7 0.9 0.8 10.2 0.2 2.0 1 1 1 2 2 2 0 Outer membrane protein SusF_SusE Arena_nucleocap PF00843.17 gi|134046347|ref|YP_001097832.1| - 0.076 11.9 0.2 0.1 11.5 0.2 1.2 1 0 0 1 1 1 0 Arenavirus nucleocapsid N-terminal domain Big_3_5 PF16640.5 gi|134046348|ref|YP_001097833.1| - 0.00072 19.7 0.0 0.0016 18.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 3) DUF4350 PF14258.6 gi|134046349|ref|YP_001097834.1| - 5.9e-08 33.0 0.0 1.5e-07 31.7 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|134046349|ref|YP_001097834.1| - 0.00046 19.7 0.1 0.0013 18.3 0.0 1.8 2 0 0 2 2 2 1 ABC-type uncharacterized transport system SAYSvFN PF10260.9 gi|134046349|ref|YP_001097834.1| - 0.094 12.7 0.1 0.23 11.4 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized conserved domain (SAYSvFN) DUF4159 PF13709.6 gi|134046349|ref|YP_001097834.1| - 0.15 11.5 0.0 0.34 10.3 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4159) AAA_3 PF07726.11 gi|134046350|ref|YP_001097835.1| - 1.2e-59 199.8 0.1 2e-59 199.2 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|134046350|ref|YP_001097835.1| - 6.1e-17 61.2 0.0 9.8e-17 60.6 0.0 1.3 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|134046350|ref|YP_001097835.1| - 2.1e-14 53.7 0.0 4.5e-14 52.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|134046350|ref|YP_001097835.1| - 0.00063 20.2 0.0 0.0012 19.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|134046350|ref|YP_001097835.1| - 0.0046 16.1 0.0 0.011 14.9 0.0 1.7 1 1 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|134046350|ref|YP_001097835.1| - 0.0065 15.9 0.2 2 7.7 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|134046350|ref|YP_001097835.1| - 0.0088 15.8 0.0 0.045 13.5 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|134046350|ref|YP_001097835.1| - 0.054 13.2 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_lid_8 PF17868.1 gi|134046350|ref|YP_001097835.1| - 0.083 12.8 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA lid domain DUF58 PF01882.18 gi|134046351|ref|YP_001097836.1| - 5e-13 49.1 0.0 7.5e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF58 BcrAD_BadFG PF01869.20 gi|134046353|ref|YP_001097838.1| - 1.6e-39 136.1 0.2 4.7e-39 134.5 0.2 1.7 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|134046353|ref|YP_001097838.1| - 0.00028 21.2 1.1 0.016 15.7 1.1 2.7 1 1 0 1 1 1 1 Cell division protein FtsA FGGY_C PF02782.16 gi|134046353|ref|YP_001097838.1| - 0.00049 19.9 0.0 0.00078 19.2 0.0 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Acetate_kinase PF00871.17 gi|134046353|ref|YP_001097838.1| - 0.0028 16.4 0.1 0.079 11.6 0.0 2.1 2 0 0 2 2 2 1 Acetokinase family MutL PF13941.6 gi|134046353|ref|YP_001097838.1| - 0.02 13.5 0.1 0.075 11.6 0.1 1.9 2 0 0 2 2 2 0 MutL protein Hydant_A_N PF05378.13 gi|134046353|ref|YP_001097838.1| - 0.12 12.1 0.2 4 7.1 0.1 2.2 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region Gpr1_Fun34_YaaH PF01184.19 gi|134046354|ref|YP_001097839.1| - 1.8e-46 158.4 15.1 2.2e-46 158.1 15.1 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Yip1 PF04893.17 gi|134046354|ref|YP_001097839.1| - 3.2 7.4 19.6 51 3.5 19.6 2.1 1 1 0 1 1 1 0 Yip1 domain HGD-D PF06050.13 gi|134046356|ref|YP_001097841.1| - 5e-91 305.8 0.2 5.7e-91 305.6 0.2 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component 5_3_exonuc PF01367.20 gi|134046356|ref|YP_001097841.1| - 0.48 11.1 2.6 0.56 10.8 0.4 2.2 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold DUF4352 PF11611.8 gi|134046357|ref|YP_001097842.1| - 0.00098 19.4 1.7 0.007 16.6 0.2 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4352) Diphthami_syn_2 PF01902.17 gi|134046358|ref|YP_001097843.1| - 1.2e-87 293.1 1.7 1.3e-87 292.9 1.7 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|134046358|ref|YP_001097843.1| - 0.031 13.8 0.0 0.058 12.9 0.0 1.6 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC CPSase_L_D2 PF02786.17 gi|134046360|ref|YP_001097845.1| - 8.8e-82 273.7 1.0 1.5e-81 272.9 1.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|134046360|ref|YP_001097845.1| - 1.6e-46 157.4 0.1 4.5e-46 155.9 0.0 1.8 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|134046360|ref|YP_001097845.1| - 3.9e-40 136.3 0.0 7.8e-40 135.3 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|134046360|ref|YP_001097845.1| - 1.2e-13 51.1 0.3 2.8e-13 49.9 0.3 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|134046360|ref|YP_001097845.1| - 1.1e-07 31.6 0.4 4.7e-07 29.5 0.2 1.9 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|134046360|ref|YP_001097845.1| - 1.3e-07 31.8 0.3 2.6e-07 30.8 0.3 1.5 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|134046360|ref|YP_001097845.1| - 6.8e-06 25.8 0.6 1.9e-05 24.4 0.6 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GARS_A PF01071.19 gi|134046360|ref|YP_001097845.1| - 0.00033 20.5 0.2 0.00084 19.2 0.2 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Oxidored_nitro PF00148.19 gi|134046360|ref|YP_001097845.1| - 0.0044 15.8 0.0 0.0066 15.2 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase ATPgrasp_Ter PF15632.6 gi|134046360|ref|YP_001097845.1| - 0.0051 16.6 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_5 PF13549.6 gi|134046360|ref|YP_001097845.1| - 0.008 15.7 0.1 0.018 14.5 0.1 1.6 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|134046360|ref|YP_001097845.1| - 0.064 12.8 0.1 0.21 11.2 0.1 2.1 1 1 0 1 1 1 0 ATP-grasp domain ExbD PF02472.16 gi|134046360|ref|YP_001097845.1| - 0.093 12.9 0.2 0.79 9.9 0.0 2.2 2 0 0 2 2 2 0 Biopolymer transport protein ExbD/TolR PYC_OADA PF02436.18 gi|134046361|ref|YP_001097846.1| - 9.8e-60 201.7 0.2 2.4e-59 200.4 0.1 1.6 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|134046361|ref|YP_001097846.1| - 2.6e-49 168.1 0.0 3.5e-49 167.7 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|134046361|ref|YP_001097846.1| - 6.9e-19 67.5 4.4 1.5e-18 66.3 4.4 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|134046361|ref|YP_001097846.1| - 7.6e-14 51.3 5.5 2.4e-06 27.3 0.4 2.7 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|134046361|ref|YP_001097846.1| - 6e-05 22.4 1.6 0.056 12.6 0.2 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|134046361|ref|YP_001097846.1| - 0.00012 22.7 0.4 0.76 10.5 0.1 2.8 2 0 0 2 2 2 2 HlyD family secretion protein RnfC_N PF13375.6 gi|134046361|ref|YP_001097846.1| - 0.00099 19.0 2.0 0.0032 17.4 1.4 2.2 2 1 0 2 2 2 1 RnfC Barrel sandwich hybrid domain NQRA PF05896.11 gi|134046361|ref|YP_001097846.1| - 0.007 15.8 0.7 0.012 15.0 0.7 1.4 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GCV_H PF01597.19 gi|134046361|ref|YP_001097846.1| - 0.023 14.6 2.5 0.025 14.5 0.8 2.0 2 0 0 2 2 2 0 Glycine cleavage H-protein His_biosynth PF00977.21 gi|134046361|ref|YP_001097846.1| - 0.041 13.3 0.0 0.088 12.2 0.0 1.6 1 0 0 1 1 1 0 Histidine biosynthesis protein NUDIX PF00293.28 gi|134046362|ref|YP_001097847.1| - 1.8e-22 79.8 0.0 2.6e-22 79.2 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|134046362|ref|YP_001097847.1| - 0.0069 15.9 0.0 0.065 12.7 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) DBI_PRT PF02277.17 gi|134046363|ref|YP_001097848.1| - 7.9e-08 31.9 0.1 1.1e-07 31.5 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase DUF2102 PF09875.9 gi|134046364|ref|YP_001097849.1| - 6.6e-40 135.0 0.0 9e-40 134.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) DUF413 PF04219.12 gi|134046364|ref|YP_001097849.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF Hjc PF01870.18 gi|134046365|ref|YP_001097850.1| - 2.2e-25 88.5 0.0 2.9e-25 88.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Mrr_cat PF04471.12 gi|134046365|ref|YP_001097850.1| - 1.3e-05 25.2 0.0 1.4e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease MTES_1575 PF18741.1 gi|134046365|ref|YP_001097850.1| - 0.00053 20.1 0.0 0.00073 19.7 0.0 1.2 1 0 0 1 1 1 1 REase_MTES_1575 HicA_toxin PF07927.12 gi|134046365|ref|YP_001097850.1| - 0.0036 17.3 0.1 0.0036 17.3 0.1 1.7 2 0 0 2 2 2 1 HicA toxin of bacterial toxin-antitoxin, DUF5128 PF17170.4 gi|134046365|ref|YP_001097850.1| - 0.029 13.5 0.1 0.036 13.2 0.1 1.1 1 0 0 1 1 1 0 6-bladed beta-propeller Mrr_cat_2 PF13156.6 gi|134046365|ref|YP_001097850.1| - 0.1 12.5 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease SpoU_methylase PF00588.19 gi|134046367|ref|YP_001097852.1| - 2.9e-31 108.5 0.1 4e-31 108.1 0.1 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family BKACE PF05853.12 gi|134046367|ref|YP_001097852.1| - 0.11 11.8 0.0 0.22 10.8 0.0 1.5 2 0 0 2 2 2 0 beta-keto acid cleavage enzyme Arb1 PF09692.10 gi|134046367|ref|YP_001097852.1| - 0.16 11.1 0.4 0.31 10.2 0.1 1.5 2 0 0 2 2 2 0 Argonaute siRNA chaperone (ARC) complex subunit Arb1 DUF92 PF01940.16 gi|134046368|ref|YP_001097853.1| - 2.8e-53 180.8 17.0 5.8e-53 179.7 17.0 1.4 1 1 0 1 1 1 1 Integral membrane protein DUF92 Colicin_V PF02674.16 gi|134046368|ref|YP_001097853.1| - 0.00018 21.5 6.2 0.00018 21.5 6.2 2.4 2 1 0 2 2 2 1 Colicin V production protein DUF373 PF04123.13 gi|134046368|ref|YP_001097853.1| - 2.8 7.3 11.5 5.6 6.3 11.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF373) SPC12 PF06645.13 gi|134046368|ref|YP_001097853.1| - 2.8 8.1 9.6 4.2 7.5 0.6 3.4 3 1 0 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) HIT PF01230.23 gi|134046369|ref|YP_001097854.1| - 1e-28 99.9 0.1 1.2e-28 99.7 0.1 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|134046369|ref|YP_001097854.1| - 3e-15 56.7 0.3 4.2e-15 56.2 0.3 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|134046369|ref|YP_001097854.1| - 0.013 15.4 0.1 0.016 15.0 0.1 1.2 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 SH2_2 PF14633.6 gi|134046369|ref|YP_001097854.1| - 0.024 14.0 0.1 0.028 13.8 0.1 1.2 1 0 0 1 1 1 0 SH2 domain CbiC PF02570.15 gi|134046370|ref|YP_001097855.1| - 1.4e-59 201.0 1.7 1.6e-59 200.9 1.7 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase DUF2097 PF09870.9 gi|134046371|ref|YP_001097856.1| - 5.8e-25 87.3 4.7 6.8e-25 87.1 4.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2097) DUF63 PF01889.17 gi|134046372|ref|YP_001097857.1| - 1.3e-82 278.1 26.1 1.5e-82 277.9 26.1 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 TMEM208_SND2 PF05620.11 gi|134046372|ref|YP_001097857.1| - 4.9 6.9 9.4 0.19 11.5 0.7 2.5 1 1 1 3 3 3 0 SRP-independent targeting protein 2/TMEM208 Glycos_transf_3 PF00591.21 gi|134046373|ref|YP_001097858.1| - 1.8e-15 57.2 1.3 2.8e-14 53.3 0.4 2.6 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.13 gi|134046373|ref|YP_001097858.1| - 5.9e-15 54.7 0.1 1.9e-14 53.0 0.1 2.0 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.17 gi|134046373|ref|YP_001097858.1| - 2.5e-13 49.6 0.1 8.5e-13 48.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Mucin_bdg PF03272.13 gi|134046373|ref|YP_001097858.1| - 0.021 14.8 0.1 0.066 13.2 0.1 1.8 2 0 0 2 2 2 0 Putative mucin or carbohydrate-binding module Lip_prot_lig_C PF10437.9 gi|134046373|ref|YP_001097858.1| - 0.1 12.6 0.1 17 5.5 0.0 2.9 3 0 0 3 3 3 0 Bacterial lipoate protein ligase C-terminus Biotin_lipoyl_2 PF13533.6 gi|134046373|ref|YP_001097858.1| - 0.13 12.1 0.0 0.77 9.6 0.0 2.3 3 0 0 3 3 3 0 Biotin-lipoyl like tRNA-synt_1g PF09334.11 gi|134046374|ref|YP_001097859.1| - 5.1e-160 532.5 0.7 6.5e-160 532.1 0.7 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|134046374|ref|YP_001097859.1| - 3e-29 101.0 0.2 5e-29 100.3 0.2 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|134046374|ref|YP_001097859.1| - 4.5e-22 78.1 6.2 1.6e-09 36.6 0.3 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|134046374|ref|YP_001097859.1| - 1.3e-15 57.6 0.2 2.1e-08 33.9 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|134046374|ref|YP_001097859.1| - 1e-06 28.8 0.5 2.3e-06 27.7 0.5 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|134046374|ref|YP_001097859.1| - 0.011 14.7 0.1 0.039 12.9 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (K) Isy1 PF06246.12 gi|134046374|ref|YP_001097859.1| - 0.065 12.8 0.3 0.11 12.1 0.3 1.3 1 0 0 1 1 1 0 Isy1-like splicing family Laminin_EGF PF00053.24 gi|134046374|ref|YP_001097859.1| - 0.54 10.4 5.4 1.1 9.5 5.4 1.5 1 0 0 1 1 1 0 Laminin EGF domain TackOD1 PF18551.1 gi|134046374|ref|YP_001097859.1| - 0.69 9.5 6.8 0.59 9.8 3.6 2.1 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|134046374|ref|YP_001097859.1| - 0.97 9.5 7.5 16 5.6 7.5 2.3 1 1 1 2 2 2 0 zinc-ribbons PHF5 PF03660.14 gi|134046374|ref|YP_001097859.1| - 1 9.6 4.5 2.3 8.5 4.5 1.5 1 0 0 1 1 1 0 PHF5-like protein HypA PF01155.19 gi|134046374|ref|YP_001097859.1| - 2.1 8.4 5.9 2.6e+02 1.6 6.0 2.6 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|134046374|ref|YP_001097859.1| - 4.7 7.3 8.2 46 4.1 8.2 2.2 1 1 0 1 1 1 0 Double zinc ribbon Gp_dh_C PF02800.20 gi|134046375|ref|YP_001097860.1| - 6.2e-33 113.6 0.7 9e-33 113.1 0.7 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|134046375|ref|YP_001097860.1| - 4.1e-09 36.6 0.3 1e-08 35.3 0.3 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|134046375|ref|YP_001097860.1| - 4.4e-06 27.0 0.6 3.2e-05 24.2 0.2 2.6 2 1 1 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|134046375|ref|YP_001097860.1| - 0.0007 19.9 0.1 0.0028 17.9 0.1 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|134046375|ref|YP_001097860.1| - 0.00098 18.5 0.1 0.015 14.7 0.1 2.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|134046375|ref|YP_001097860.1| - 0.0067 16.7 0.0 0.018 15.3 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_3 PF03447.16 gi|134046375|ref|YP_001097860.1| - 0.022 15.4 0.1 0.072 13.8 0.0 1.9 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|134046375|ref|YP_001097860.1| - 0.07 13.8 0.1 0.22 12.2 0.1 2.0 1 1 0 1 1 1 0 PglD N-terminal domain CoA_binding PF02629.19 gi|134046375|ref|YP_001097860.1| - 0.092 13.4 0.6 0.23 12.2 0.6 1.7 1 0 0 1 1 1 0 CoA binding domain Sigma70_r4_2 PF08281.12 gi|134046376|ref|YP_001097861.1| - 0.00019 21.0 0.2 0.0004 20.0 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 DUF1699 PF08004.11 gi|134046376|ref|YP_001097861.1| - 0.0036 17.0 1.3 0.0056 16.3 1.3 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1699) GerE PF00196.19 gi|134046376|ref|YP_001097861.1| - 0.055 13.0 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family SpoU_sub_bind PF08032.12 gi|134046376|ref|YP_001097861.1| - 0.093 13.0 0.9 0.15 12.3 0.2 1.7 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding Radical_SAM PF04055.21 gi|134046377|ref|YP_001097862.1| - 1.2e-08 35.6 0.0 2.3e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|134046377|ref|YP_001097862.1| - 0.0093 16.2 0.3 0.056 13.7 0.0 2.4 3 0 0 3 3 3 1 4Fe-4S single cluster domain YmzC PF14157.6 gi|134046377|ref|YP_001097862.1| - 0.0097 16.0 0.1 0.025 14.7 0.1 1.7 1 0 0 1 1 1 1 YmzC-like protein DUF3996 PF13161.6 gi|134046377|ref|YP_001097862.1| - 0.024 14.4 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3996) Fer4_14 PF13394.6 gi|134046377|ref|YP_001097862.1| - 0.068 13.3 0.1 0.23 11.6 0.0 1.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain HTH_19 PF12844.7 gi|134046377|ref|YP_001097862.1| - 0.076 13.0 0.5 2.5 8.2 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain 7TMR-HDED PF07697.11 gi|134046377|ref|YP_001097862.1| - 0.12 12.5 0.2 0.55 10.3 0.0 2.1 2 0 0 2 2 2 0 7TM-HD extracellular Fib_alpha PF08702.10 gi|134046377|ref|YP_001097862.1| - 4.4 7.5 8.4 0.26 11.5 1.3 2.5 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family Met_10 PF02475.16 gi|134046378|ref|YP_001097863.1| - 5e-66 222.2 0.7 6.9e-66 221.8 0.7 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|134046378|ref|YP_001097863.1| - 4.7e-16 58.4 1.0 1.5e-15 56.8 0.2 2.4 2 0 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_15 PF09445.10 gi|134046378|ref|YP_001097863.1| - 2.5e-06 27.2 0.1 4.4e-06 26.4 0.1 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|134046378|ref|YP_001097863.1| - 3.9e-06 26.5 0.1 6.4e-06 25.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|134046378|ref|YP_001097863.1| - 0.00022 21.1 0.5 0.0035 17.1 0.0 2.6 2 1 1 3 3 3 1 Methyltransferase domain MTS PF05175.14 gi|134046378|ref|YP_001097863.1| - 0.00041 19.9 0.1 0.0011 18.6 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|134046378|ref|YP_001097863.1| - 0.00087 20.0 0.0 0.0044 17.7 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain TRM PF02005.16 gi|134046378|ref|YP_001097863.1| - 0.0054 15.9 0.1 0.0092 15.2 0.1 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase CorC_HlyC PF03471.17 gi|134046378|ref|YP_001097863.1| - 0.019 15.0 0.0 0.11 12.6 0.0 2.2 2 0 0 2 2 2 0 Transporter associated domain Cons_hypoth95 PF03602.15 gi|134046378|ref|YP_001097863.1| - 0.025 14.2 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_18 PF12847.7 gi|134046378|ref|YP_001097863.1| - 0.066 13.1 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|134046378|ref|YP_001097863.1| - 0.098 13.3 0.0 0.36 11.5 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain AAA PF00004.29 gi|134046379|ref|YP_001097864.1| - 3.6e-14 53.3 0.1 9e-14 52.0 0.1 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|134046379|ref|YP_001097864.1| - 8.2e-12 45.4 0.0 3.3e-11 43.5 0.0 2.0 1 1 0 1 1 1 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|134046379|ref|YP_001097864.1| - 5.7e-08 32.7 0.0 1.4e-07 31.4 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|134046379|ref|YP_001097864.1| - 7.9e-08 31.8 0.0 1.3e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DNA_pol3_delta PF06144.13 gi|134046379|ref|YP_001097864.1| - 1.8e-06 27.9 0.0 5.7e-06 26.2 0.0 1.9 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_14 PF13173.6 gi|134046379|ref|YP_001097864.1| - 2.1e-06 27.8 0.0 4.7e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|134046379|ref|YP_001097864.1| - 2.2e-06 28.0 0.3 0.0029 17.9 0.0 3.8 2 2 1 3 3 3 1 AAA domain Zeta_toxin PF06414.12 gi|134046379|ref|YP_001097864.1| - 9.1e-05 21.8 0.0 0.00023 20.5 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.6 gi|134046379|ref|YP_001097864.1| - 9.1e-05 23.0 0.0 0.00024 21.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|134046379|ref|YP_001097864.1| - 0.00013 22.3 0.1 0.00074 19.8 0.1 2.3 1 0 0 1 1 1 1 AAA C-terminal domain IstB_IS21 PF01695.17 gi|134046379|ref|YP_001097864.1| - 0.00015 21.5 0.0 0.00034 20.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|134046379|ref|YP_001097864.1| - 0.00018 20.8 0.2 0.00059 19.1 0.0 1.9 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_16 PF13191.6 gi|134046379|ref|YP_001097864.1| - 0.00025 21.5 0.0 0.0011 19.4 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|134046379|ref|YP_001097864.1| - 0.00027 20.9 0.0 0.0076 16.2 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_17 PF13207.6 gi|134046379|ref|YP_001097864.1| - 0.00033 21.1 0.0 0.0022 18.4 0.0 2.5 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|134046379|ref|YP_001097864.1| - 0.00044 20.4 0.0 0.0013 19.0 0.0 1.9 2 0 0 2 2 1 1 AAA domain NB-ARC PF00931.22 gi|134046379|ref|YP_001097864.1| - 0.00055 19.2 0.1 0.013 14.7 0.0 2.7 2 1 0 2 2 2 1 NB-ARC domain ATPase_2 PF01637.18 gi|134046379|ref|YP_001097864.1| - 0.00069 19.6 0.0 0.00069 19.6 0.0 2.0 2 1 0 2 2 1 1 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|134046379|ref|YP_001097864.1| - 0.001 18.2 0.0 0.0039 16.3 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_5 PF07728.14 gi|134046379|ref|YP_001097864.1| - 0.0015 18.6 0.1 0.0092 16.0 0.0 2.5 3 1 0 3 3 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|134046379|ref|YP_001097864.1| - 0.0015 17.9 0.0 0.0025 17.2 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|134046379|ref|YP_001097864.1| - 0.0016 18.2 0.1 0.0028 17.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|134046379|ref|YP_001097864.1| - 0.0016 18.4 0.4 0.0073 16.3 0.0 2.2 2 1 1 3 3 2 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|134046379|ref|YP_001097864.1| - 0.0027 17.3 0.5 0.021 14.4 0.1 2.1 1 1 1 2 2 2 1 AAA domain RFC1 PF08519.12 gi|134046379|ref|YP_001097864.1| - 0.0031 17.7 0.5 0.0097 16.1 0.5 1.9 1 1 0 1 1 1 1 Replication factor RFC1 C terminal domain NTPase_1 PF03266.15 gi|134046379|ref|YP_001097864.1| - 0.0042 17.0 0.0 0.11 12.4 0.0 2.6 2 0 0 2 2 2 1 NTPase DEAD PF00270.29 gi|134046379|ref|YP_001097864.1| - 0.0053 16.5 0.0 1.7 8.4 0.0 2.8 1 1 1 2 2 2 1 DEAD/DEAH box helicase RNA_helicase PF00910.22 gi|134046379|ref|YP_001097864.1| - 0.0061 16.9 0.0 0.018 15.4 0.0 1.8 1 0 0 1 1 1 1 RNA helicase AAA_24 PF13479.6 gi|134046379|ref|YP_001097864.1| - 0.0071 16.1 0.1 0.016 14.9 0.1 1.7 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|134046379|ref|YP_001097864.1| - 0.0077 16.8 0.1 0.044 14.3 0.0 2.3 2 1 0 2 2 2 1 ABC transporter AAA_7 PF12775.7 gi|134046379|ref|YP_001097864.1| - 0.0082 15.7 0.0 0.034 13.7 0.0 2.0 1 1 1 2 2 2 1 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|134046379|ref|YP_001097864.1| - 0.0083 16.2 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_29 PF13555.6 gi|134046379|ref|YP_001097864.1| - 0.01 15.6 0.1 0.05 13.4 0.0 2.2 2 0 0 2 2 1 0 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|134046379|ref|YP_001097864.1| - 0.011 16.1 0.9 0.053 13.9 0.1 2.4 2 1 1 3 3 2 0 AAA domain SRPRB PF09439.10 gi|134046379|ref|YP_001097864.1| - 0.011 15.2 0.4 0.5 9.8 0.0 2.9 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit TsaE PF02367.17 gi|134046379|ref|YP_001097864.1| - 0.013 15.5 0.0 0.032 14.2 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|134046379|ref|YP_001097864.1| - 0.014 15.7 0.0 0.079 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|134046379|ref|YP_001097864.1| - 0.015 15.0 0.0 0.031 14.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_2 PF07724.14 gi|134046379|ref|YP_001097864.1| - 0.018 15.2 0.0 0.058 13.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Parvo_NS1 PF01057.17 gi|134046379|ref|YP_001097864.1| - 0.039 13.0 0.0 0.11 11.5 0.0 1.7 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.18 gi|134046379|ref|YP_001097864.1| - 0.051 13.4 0.1 0.2 11.5 0.1 2.0 1 1 0 1 1 1 0 Bacterial dnaA protein SRP54 PF00448.22 gi|134046379|ref|YP_001097864.1| - 0.061 12.9 0.0 2.6 7.6 0.0 3.0 4 0 0 4 4 3 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|134046379|ref|YP_001097864.1| - 0.061 13.2 0.1 0.2 11.5 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase AAA_23 PF13476.6 gi|134046379|ref|YP_001097864.1| - 0.062 13.8 2.8 1.5 9.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.15 gi|134046379|ref|YP_001097864.1| - 0.067 12.5 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain ADK PF00406.22 gi|134046379|ref|YP_001097864.1| - 0.077 13.1 0.2 0.22 11.6 0.0 1.9 2 0 0 2 2 1 0 Adenylate kinase AAA_11 PF13086.6 gi|134046379|ref|YP_001097864.1| - 0.12 12.1 1.9 0.34 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain Hydin_ADK PF17213.3 gi|134046379|ref|YP_001097864.1| - 0.28 11.5 1.9 0.55 10.5 0.0 2.2 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain DUF447 PF04289.12 gi|134046380|ref|YP_001097865.1| - 6.3e-38 130.3 0.0 7.7e-38 130.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) GHMP_kinases_N PF00288.26 gi|134046381|ref|YP_001097866.1| - 1.8e-12 47.3 1.1 2.2e-10 40.6 1.5 2.3 2 0 0 2 2 2 2 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|134046381|ref|YP_001097866.1| - 5.2e-05 23.5 0.0 0.00014 22.1 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal TP_methylase PF00590.20 gi|134046382|ref|YP_001097867.1| - 5.9e-46 157.1 0.0 6.7e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases ILVD_EDD PF00920.21 gi|134046383|ref|YP_001097868.1| - 1.7e-215 716.6 1.6 1.9e-215 716.4 1.6 1.0 1 0 0 1 1 1 1 Dehydratase family FBPase_3 PF01950.16 gi|134046384|ref|YP_001097869.1| - 2.9e-179 595.8 0.0 3.4e-179 595.7 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase TPP_enzyme_C PF02775.21 gi|134046385|ref|YP_001097870.1| - 1.4e-28 99.7 0.0 2.6e-28 98.7 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|134046385|ref|YP_001097870.1| - 9.4e-17 61.5 0.0 1.3e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|134046385|ref|YP_001097870.1| - 4.3e-08 32.6 17.3 1.3e-05 24.8 4.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134046385|ref|YP_001097870.1| - 4e-06 26.6 15.1 0.0059 16.6 1.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134046385|ref|YP_001097870.1| - 4.3e-06 26.7 17.5 0.00016 21.7 13.5 3.2 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134046385|ref|YP_001097870.1| - 4.9e-06 26.6 24.9 3.5e-05 23.8 13.6 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134046385|ref|YP_001097870.1| - 1.6e-05 24.7 18.2 0.0015 18.5 4.3 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134046385|ref|YP_001097870.1| - 0.0003 21.3 15.1 0.0018 18.8 1.4 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134046385|ref|YP_001097870.1| - 0.0007 19.7 13.2 0.0018 18.4 11.9 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|134046385|ref|YP_001097870.1| - 0.0012 18.5 0.0 0.0043 16.7 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_16 PF13484.6 gi|134046385|ref|YP_001097870.1| - 0.0061 17.5 11.2 0.017 16.1 2.9 2.8 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|134046385|ref|YP_001097870.1| - 0.0073 16.7 2.9 0.0073 16.7 2.9 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain PFOR_II PF17147.4 gi|134046385|ref|YP_001097870.1| - 0.012 15.9 0.0 0.037 14.3 0.0 1.9 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Fer4_17 PF13534.6 gi|134046385|ref|YP_001097870.1| - 0.018 15.6 2.4 0.018 15.6 2.4 2.8 2 1 1 3 3 2 0 4Fe-4S dicluster domain Transket_pyr PF02779.24 gi|134046385|ref|YP_001097870.1| - 0.035 13.8 0.0 0.25 11.0 0.0 2.2 3 0 0 3 3 3 0 Transketolase, pyrimidine binding domain Fer4_15 PF13459.6 gi|134046385|ref|YP_001097870.1| - 0.058 14.1 8.4 1.6 9.5 0.6 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|134046385|ref|YP_001097870.1| - 0.3 11.5 13.8 0.047 14.1 2.7 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|134046385|ref|YP_001097870.1| - 0.4 11.3 13.5 3.3 8.3 3.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I POR PF01558.18 gi|134046386|ref|YP_001097871.1| - 4e-31 108.4 0.0 5e-31 108.1 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Tubulin PF00091.25 gi|134046386|ref|YP_001097871.1| - 0.013 15.7 1.3 0.054 13.7 0.1 2.0 2 0 0 2 2 2 0 Tubulin/FtsZ family, GTPase domain Ntox4 PF15541.6 gi|134046386|ref|YP_001097871.1| - 0.11 12.8 0.0 0.33 11.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial toxin 4 AMP-binding_C_2 PF14535.6 gi|134046387|ref|YP_001097872.1| - 5.9e-25 87.4 0.4 5.2e-24 84.4 0.0 2.3 2 1 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|134046387|ref|YP_001097872.1| - 1.1e-10 40.7 0.0 1.1e-10 40.7 0.0 1.4 2 0 0 2 2 2 1 AMP-binding enzyme GH3 PF03321.13 gi|134046387|ref|YP_001097872.1| - 1.5e-05 24.1 0.0 0.0007 18.6 0.0 2.2 2 0 0 2 2 2 2 GH3 auxin-responsive promoter DUF3834 PF12916.7 gi|134046388|ref|YP_001097873.1| - 0.0093 15.2 1.5 0.0099 15.2 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) DUF348 PF03990.14 gi|134046388|ref|YP_001097873.1| - 0.19 11.5 1.5 0.55 10.0 0.0 2.5 4 0 0 4 4 4 0 G5-linked-Ubiquitin-like domain DUF2112 PF09885.9 gi|134046389|ref|YP_001097874.1| - 1.4e-63 213.2 0.1 1.7e-63 213.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2111 PF09884.9 gi|134046390|ref|YP_001097875.1| - 1.8e-33 114.5 2.3 2.1e-33 114.2 2.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) TYW3 PF02676.14 gi|134046391|ref|YP_001097876.1| - 1.7e-38 132.1 0.0 2.1e-38 131.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase TYW3 DUSP PF06337.12 gi|134046391|ref|YP_001097876.1| - 0.01 16.4 0.2 0.021 15.4 0.2 1.5 1 0 0 1 1 1 0 DUSP domain SF3a60_bindingd PF12108.8 gi|134046391|ref|YP_001097876.1| - 1.1 9.2 4.7 1.3 9.0 0.7 2.4 2 0 0 2 2 2 0 Splicing factor SF3a60 binding domain DrsE PF02635.15 gi|134046392|ref|YP_001097877.1| - 4.6e-27 94.7 0.0 5.1e-27 94.6 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|134046392|ref|YP_001097877.1| - 7.2e-06 26.0 0.1 0.00015 21.7 0.0 2.0 1 1 1 2 2 2 1 DsrE/DsrF/DrsH-like family DsrH PF04077.12 gi|134046392|ref|YP_001097877.1| - 0.012 15.7 0.0 0.029 14.5 0.0 1.7 1 1 0 1 1 1 0 DsrH like protein TusA PF01206.17 gi|134046393|ref|YP_001097878.1| - 1.4e-23 82.5 0.0 1.5e-23 82.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|134046393|ref|YP_001097878.1| - 0.006 16.4 0.0 0.0074 16.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) SWIM PF04434.17 gi|134046394|ref|YP_001097879.1| - 9.1e-06 25.2 0.1 1.6e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger POR_N PF01855.19 gi|134046395|ref|YP_001097880.1| - 2.1e-55 188.0 0.0 3.6e-55 187.2 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|134046395|ref|YP_001097880.1| - 2e-25 89.9 0.0 4.1e-25 88.9 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|134046395|ref|YP_001097880.1| - 0.00061 19.4 0.0 0.0013 18.4 0.0 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|134046396|ref|YP_001097881.1| - 4.9e-31 107.6 0.2 1.8e-30 105.7 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|134046396|ref|YP_001097881.1| - 2.6e-23 81.9 1.0 4.9e-23 81.0 1.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal AGOG PF09171.10 gi|134046397|ref|YP_001097882.1| - 6.6e-89 297.5 3.7 9.3e-89 297.0 3.7 1.1 1 0 0 1 1 1 1 N-glycosylase/DNA lyase PilO PF04350.13 gi|134046397|ref|YP_001097882.1| - 0.041 14.0 0.0 0.067 13.4 0.0 1.3 1 0 0 1 1 1 0 Pilus assembly protein, PilO OxoGdeHyase_C PF16870.5 gi|134046397|ref|YP_001097882.1| - 0.11 12.2 0.1 0.29 10.8 0.1 1.7 1 1 0 1 1 1 0 2-oxoglutarate dehydrogenase C-terminal Rubredoxin PF00301.20 gi|134046398|ref|YP_001097883.1| - 9.4e-13 48.0 8.1 3.1e-11 43.1 8.1 2.0 1 1 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.15 gi|134046398|ref|YP_001097883.1| - 0.0001 22.2 0.9 0.068 13.2 0.1 2.1 2 0 0 2 2 2 2 Sec23/Sec24 zinc finger Zn-ribbon_8 PF09723.10 gi|134046398|ref|YP_001097883.1| - 0.00043 20.3 0.6 0.00058 19.9 0.6 1.2 1 0 0 1 1 1 1 Zinc ribbon domain Elf1 PF05129.13 gi|134046398|ref|YP_001097883.1| - 0.0027 17.7 1.6 0.031 14.3 0.1 2.0 1 1 1 2 2 2 1 Transcription elongation factor Elf1 like HalOD2 PF18547.1 gi|134046398|ref|YP_001097883.1| - 0.0033 17.3 5.4 0.42 10.5 1.1 2.1 1 1 1 2 2 2 2 Halobacterial output domain 2 HypA PF01155.19 gi|134046398|ref|YP_001097883.1| - 0.0037 17.3 0.6 0.0037 17.3 0.6 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-MIZ PF02891.20 gi|134046398|ref|YP_001097883.1| - 0.0041 16.8 2.6 0.3 10.8 0.1 2.1 2 0 0 2 2 2 2 MIZ/SP-RING zinc finger Vps36-NZF-N PF16988.5 gi|134046398|ref|YP_001097883.1| - 0.0049 16.2 5.6 0.51 9.8 0.5 2.0 1 1 0 2 2 2 2 Vacuolar protein sorting 36 NZF-N zinc-finger domain VATC PF18716.1 gi|134046398|ref|YP_001097883.1| - 0.0052 16.6 0.8 0.38 10.6 0.2 2.1 2 0 0 2 2 2 1 Vms1-associating treble clef domain OrfB_Zn_ribbon PF07282.11 gi|134046398|ref|YP_001097883.1| - 0.0057 16.6 1.3 0.03 14.2 1.3 1.9 1 1 0 1 1 1 1 Putative transposase DNA-binding domain RbpA PF13397.6 gi|134046398|ref|YP_001097883.1| - 0.0071 16.9 1.8 0.12 13.0 0.2 2.0 1 1 1 2 2 2 1 RNA polymerase-binding protein Zn_Tnp_IS1595 PF12760.7 gi|134046398|ref|YP_001097883.1| - 0.0074 16.2 0.7 0.23 11.4 0.0 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-RanBP PF00641.18 gi|134046398|ref|YP_001097883.1| - 0.0077 15.5 5.7 0.31 10.4 0.4 2.2 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others Desulfoferrod_N PF06397.12 gi|134046398|ref|YP_001097883.1| - 0.0094 15.5 0.5 0.19 11.4 0.3 2.1 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain Zn_ribbon_SprT PF17283.2 gi|134046398|ref|YP_001097883.1| - 0.016 15.1 3.3 1.9 8.5 0.7 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DUF4379 PF14311.6 gi|134046398|ref|YP_001097883.1| - 0.016 15.5 4.7 1 9.7 5.1 2.1 1 1 1 2 2 2 0 Probable Zinc-ribbon domain Prok-RING_1 PF14446.6 gi|134046398|ref|YP_001097883.1| - 0.017 15.0 0.9 0.093 12.7 0.9 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|134046398|ref|YP_001097883.1| - 0.018 14.7 4.6 1.9 8.3 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Headcase PF16002.5 gi|134046398|ref|YP_001097883.1| - 0.048 13.1 0.1 0.048 13.1 0.1 1.0 1 0 0 1 1 1 0 Headcase protein UPF0547 PF10571.9 gi|134046398|ref|YP_001097883.1| - 0.056 13.5 1.7 2.9 8.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2072 PF09845.9 gi|134046398|ref|YP_001097883.1| - 0.064 13.5 2.2 0.11 12.8 2.2 1.4 1 1 0 1 1 1 0 Zn-ribbon containing protein zf_UBZ PF18439.1 gi|134046398|ref|YP_001097883.1| - 0.079 12.6 1.0 1.4 8.5 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|134046398|ref|YP_001097883.1| - 0.082 12.3 2.7 2 8.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|134046398|ref|YP_001097883.1| - 0.15 13.0 2.6 6.6 7.9 0.4 2.3 2 1 0 2 2 2 0 C2H2-type zinc finger PHD_4 PF16866.5 gi|134046398|ref|YP_001097883.1| - 0.32 11.1 6.2 2.9 8.0 6.2 2.0 1 1 0 1 1 1 0 PHD-finger DUF2175 PF09943.9 gi|134046398|ref|YP_001097883.1| - 0.4 11.0 3.2 3.1 8.2 0.3 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2175) zf-C2H2 PF00096.26 gi|134046398|ref|YP_001097883.1| - 1 9.9 4.1 17 6.1 0.9 2.4 2 1 0 2 2 2 0 Zinc finger, C2H2 type Zn-C2H2_12 PF18112.1 gi|134046398|ref|YP_001097883.1| - 3.2 8.3 6.5 12 6.4 2.4 2.3 2 1 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain CorC_HlyC PF03471.17 gi|134046399|ref|YP_001097884.1| - 0.053 13.5 0.0 0.076 13.0 0.0 1.4 1 0 0 1 1 1 0 Transporter associated domain HypA PF01155.19 gi|134046400|ref|YP_001097885.1| - 7.8e-28 96.7 0.8 9.1e-28 96.5 0.8 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_6 PF14599.6 gi|134046400|ref|YP_001097885.1| - 0.016 15.2 0.4 0.029 14.4 0.4 1.5 1 0 0 1 1 1 0 Zinc-ribbon Zn-ribbon_8 PF09723.10 gi|134046400|ref|YP_001097885.1| - 0.081 13.1 2.8 0.13 12.4 1.3 2.0 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.6 gi|134046400|ref|YP_001097885.1| - 0.15 12.8 1.3 1.1 10.0 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.6 gi|134046400|ref|YP_001097885.1| - 0.18 12.2 2.4 12 6.3 0.2 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar RNA_binding PF01877.17 gi|134046401|ref|YP_001097886.1| - 7.3e-35 119.8 3.2 7.3e-35 119.8 3.2 1.3 2 0 0 2 2 2 1 RNA binding tRNA_lig_kinase PF08303.11 gi|134046401|ref|YP_001097886.1| - 0.029 14.5 0.8 0.049 13.7 0.8 1.3 1 0 0 1 1 1 0 tRNA ligase kinase domain Cnd1 PF12717.7 gi|134046401|ref|YP_001097886.1| - 0.1 12.6 1.0 0.16 12.0 0.5 1.5 1 1 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 Ribosomal_L15e PF00827.17 gi|134046402|ref|YP_001097887.1| - 1.3e-87 292.5 8.0 1.4e-87 292.4 8.0 1.0 1 0 0 1 1 1 1 Ribosomal L15 eIF-5_eIF-2B PF01873.17 gi|134046403|ref|YP_001097888.1| - 1.5e-36 124.8 0.0 1.8e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.6 gi|134046403|ref|YP_001097888.1| - 0.026 14.9 1.0 0.043 14.2 1.0 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|134046403|ref|YP_001097888.1| - 0.051 13.3 2.0 1.5 8.6 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|134046403|ref|YP_001097888.1| - 0.065 12.7 0.7 0.15 11.6 0.7 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|134046403|ref|YP_001097888.1| - 0.068 13.2 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons Stc1 PF12898.7 gi|134046403|ref|YP_001097888.1| - 0.086 13.4 0.4 0.15 12.7 0.1 1.5 2 0 0 2 2 2 0 Stc1 domain NMD3 PF04981.13 gi|134046403|ref|YP_001097888.1| - 0.09 12.2 0.3 0.17 11.4 0.3 1.4 1 0 0 1 1 1 0 NMD3 family DUF3834 PF12916.7 gi|134046403|ref|YP_001097888.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) Nudix_N_2 PF14803.6 gi|134046403|ref|YP_001097888.1| - 0.14 12.1 1.3 0.34 10.9 1.3 1.7 1 1 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|134046403|ref|YP_001097888.1| - 0.14 11.6 2.1 1.3 8.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|134046403|ref|YP_001097888.1| - 0.17 12.0 2.5 1.4 9.1 0.1 2.2 1 1 0 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|134046403|ref|YP_001097888.1| - 0.17 11.2 1.8 0.35 10.3 1.4 1.7 2 0 0 2 2 2 0 Transcription factor zinc-finger DUF35_N PF12172.8 gi|134046403|ref|YP_001097888.1| - 0.23 11.3 3.3 1 9.3 0.1 2.2 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1451 PF07295.11 gi|134046403|ref|YP_001097888.1| - 0.25 11.4 1.0 3.8 7.5 0.0 2.2 2 0 0 2 2 2 0 Zinc-ribbon containing domain TFIIS_C PF01096.18 gi|134046403|ref|YP_001097888.1| - 0.26 11.2 2.1 4.3 7.3 2.1 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zf-ACC PF17848.1 gi|134046403|ref|YP_001097888.1| - 0.32 11.1 2.6 2.9 8.1 0.1 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf_C2H2_13 PF18508.1 gi|134046403|ref|YP_001097888.1| - 1.1 8.9 3.9 1.3 8.6 0.8 2.2 1 1 1 2 2 2 0 Zinc finger domain DUF1610 PF07754.11 gi|134046403|ref|YP_001097888.1| - 1.2 9.2 6.6 2.2 8.3 0.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) NMD3 PF04981.13 gi|134046404|ref|YP_001097889.1| - 2.6e-53 181.0 0.3 3.6e-53 180.5 0.3 1.2 1 0 0 1 1 1 1 NMD3 family PGDYG PF14083.6 gi|134046404|ref|YP_001097889.1| - 0.0025 18.0 0.0 0.0053 17.0 0.0 1.5 1 0 0 1 1 1 1 PGDYG protein DZR PF12773.7 gi|134046404|ref|YP_001097889.1| - 0.068 13.2 3.3 0.53 10.4 1.2 2.4 2 0 0 2 2 2 0 Double zinc ribbon zf-Sec23_Sec24 PF04810.15 gi|134046404|ref|YP_001097889.1| - 0.075 13.1 0.5 0.075 13.1 0.5 2.5 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger EFP_N PF08207.12 gi|134046404|ref|YP_001097889.1| - 0.16 12.0 1.3 2.1 8.5 0.0 2.5 2 0 0 2 2 2 0 Elongation factor P (EF-P) KOW-like domain GHMP_kinases_N PF00288.26 gi|134046405|ref|YP_001097890.1| - 1.1e-14 54.3 1.6 2.1e-14 53.5 1.6 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|134046405|ref|YP_001097890.1| - 2.4e-08 34.2 0.0 5.5e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal PQQ_3 PF13570.6 gi|134046406|ref|YP_001097891.1| - 2.9e-70 231.2 3.0 3.1e-10 40.2 0.0 8.0 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|134046406|ref|YP_001097891.1| - 5.3e-54 177.7 29.5 7.7e-09 35.1 0.0 9.1 9 0 0 9 9 9 8 PQQ enzyme repeat PQQ_2 PF13360.6 gi|134046406|ref|YP_001097891.1| - 3.6e-34 118.4 0.0 2.6e-14 53.4 0.0 3.1 1 1 2 3 3 3 3 PQQ-like domain Reg_prop PF07494.11 gi|134046406|ref|YP_001097891.1| - 9.9e-07 28.3 4.0 13 6.5 0.0 7.4 7 0 0 7 7 7 1 Two component regulator propeller DUF1972 PF09314.11 gi|134046406|ref|YP_001097891.1| - 0.0013 18.3 3.5 7.2 6.1 0.0 5.1 3 1 3 6 6 6 1 Domain of unknown function (DUF1972) Ago_N_1 PF18351.1 gi|134046406|ref|YP_001097891.1| - 0.0019 18.6 4.9 1.3e+02 3.1 0.0 6.5 7 0 0 7 7 7 0 Fungal Argonaute N-terminal domain DUF846 PF05832.12 gi|134046406|ref|YP_001097891.1| - 0.0047 17.0 3.7 76 3.3 0.1 5.8 5 2 1 6 6 6 0 Eukaryotic protein of unknown function (DUF846) DUF4836 PF16120.5 gi|134046406|ref|YP_001097891.1| - 0.054 12.4 3.5 21 3.9 0.1 4.0 3 1 1 4 4 4 0 Domain of unknown function (DUF4836) Big_11 PF18200.1 gi|134046406|ref|YP_001097891.1| - 0.1 12.5 5.4 46 4.0 0.0 5.7 6 1 1 7 7 7 0 Bacterial Ig-like domain Cadherin_pro PF08758.11 gi|134046406|ref|YP_001097891.1| - 0.25 11.5 0.2 1.6e+02 2.5 0.0 4.2 5 0 0 5 5 5 0 Cadherin prodomain like Thermopsin PF05317.11 gi|134046406|ref|YP_001097891.1| - 5.8 6.3 9.1 6.3 6.2 0.3 3.4 3 1 0 4 4 4 0 Thermopsin DUF5122 PF17164.4 gi|134046406|ref|YP_001097891.1| - 9.2 6.7 17.0 27 5.1 0.3 6.2 7 1 0 7 7 7 0 Domain of unknown function (DUF5122) beta-propeller DeoC PF01791.9 gi|134046407|ref|YP_001097892.1| - 6.2e-48 163.5 0.0 7.4e-48 163.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase Pox_VLTF3 PF04947.14 gi|134046408|ref|YP_001097893.1| - 0.04 13.7 1.5 0.039 13.7 1.5 1.1 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like AIRS_C PF02769.22 gi|134046409|ref|YP_001097894.1| - 1.2e-12 48.2 0.3 2.3e-12 47.3 0.3 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|134046409|ref|YP_001097894.1| - 3.3e-07 30.9 4.8 7.3e-07 29.8 4.8 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain NYD-SP28 PF14772.6 gi|134046409|ref|YP_001097894.1| - 0.13 12.3 1.0 0.38 10.8 1.0 1.8 1 0 0 1 1 1 0 Sperm tail NAC PF01849.18 gi|134046410|ref|YP_001097895.1| - 3.3e-14 52.6 3.8 7e-14 51.5 3.8 1.6 1 0 0 1 1 1 1 NAC domain SCO1-SenC PF02630.14 gi|134046410|ref|YP_001097895.1| - 0.0004 20.3 0.7 0.00058 19.8 0.7 1.2 1 0 0 1 1 1 1 SCO1/SenC HOIP-UBA PF16678.5 gi|134046410|ref|YP_001097895.1| - 0.008 16.2 0.4 0.008 16.2 0.4 1.5 2 0 0 2 2 2 1 HOIP UBA domain pair Flg_hook PF02120.16 gi|134046410|ref|YP_001097895.1| - 0.018 14.9 0.3 0.19 11.7 0.0 2.1 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK UBA_4 PF14555.6 gi|134046410|ref|YP_001097895.1| - 0.018 14.8 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain DHR10 PF18595.1 gi|134046410|ref|YP_001097895.1| - 0.026 14.6 1.6 0.026 14.6 1.6 1.4 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain GvpK PF05121.12 gi|134046410|ref|YP_001097895.1| - 0.028 14.4 0.5 6.4 6.9 0.1 2.3 2 0 0 2 2 2 0 Gas vesicle protein K Antimicrobial_5 PF08026.11 gi|134046410|ref|YP_001097895.1| - 0.097 12.8 0.4 0.15 12.2 0.4 1.2 1 0 0 1 1 1 0 Bee antimicrobial peptide Histone_HNS PF00816.21 gi|134046410|ref|YP_001097895.1| - 0.67 10.8 4.8 1 10.2 0.0 2.3 2 1 0 2 2 2 0 H-NS histone family HypD PF01924.16 gi|134046411|ref|YP_001097896.1| - 1.6e-144 481.3 0.6 1.8e-144 481.1 0.6 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family DUF1624 PF07786.12 gi|134046412|ref|YP_001097897.1| - 3.3e-64 216.5 19.4 3.8e-64 216.3 19.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) OpgC_C PF10129.9 gi|134046412|ref|YP_001097897.1| - 0.00089 18.2 14.9 0.001 18.0 9.0 2.5 1 1 1 3 3 3 2 OpgC protein CBS PF00571.28 gi|134046413|ref|YP_001097898.1| - 9.4e-22 77.2 3.9 1.8e-10 41.1 0.5 2.4 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|134046413|ref|YP_001097898.1| - 6.7e-12 45.5 0.2 2.7e-11 43.6 0.1 2.0 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|134046413|ref|YP_001097898.1| - 0.00066 19.8 0.2 0.0031 17.6 0.2 2.0 1 1 0 1 1 1 1 Putative ParB-like nuclease KR PF08659.10 gi|134046413|ref|YP_001097898.1| - 0.06 13.2 0.4 0.21 11.5 0.0 2.0 3 0 0 3 3 3 0 KR domain MJ1316 PF04457.12 gi|134046414|ref|YP_001097899.1| - 4.2e-14 53.0 0.0 4.6e-14 52.9 0.0 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain TrkA_N PF02254.18 gi|134046415|ref|YP_001097900.1| - 2.7e-21 76.0 1.1 2.7e-21 76.0 1.1 1.9 2 0 0 2 2 2 1 TrkA-N domain DHH PF01368.20 gi|134046415|ref|YP_001097900.1| - 2.4e-14 53.4 0.1 7.2e-14 51.8 0.1 1.9 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.19 gi|134046415|ref|YP_001097900.1| - 2.6e-10 40.9 0.1 2.6e-10 40.9 0.1 3.0 3 0 0 3 3 3 1 DHHA1 domain NAD_binding_7 PF13241.6 gi|134046415|ref|YP_001097900.1| - 7.2e-05 23.2 0.3 0.0002 21.7 0.3 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|134046415|ref|YP_001097900.1| - 0.0025 18.1 0.1 0.0063 16.8 0.1 1.8 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain XdhC_C PF13478.6 gi|134046415|ref|YP_001097900.1| - 0.0028 18.2 0.0 0.1 13.1 0.0 2.8 2 0 0 2 2 2 1 XdhC Rossmann domain SQHop_cyclase_N PF13249.6 gi|134046415|ref|YP_001097900.1| - 0.15 11.1 0.0 0.28 10.2 0.0 1.3 1 0 0 1 1 1 0 Squalene-hopene cyclase N-terminal domain GTP_EFTU PF00009.27 gi|134046416|ref|YP_001097901.1| - 4.2e-32 111.3 0.8 4e-31 108.1 0.1 2.6 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|134046416|ref|YP_001097901.1| - 2.3e-27 94.7 0.4 6.5e-27 93.3 0.4 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|134046416|ref|YP_001097901.1| - 3.7e-22 78.4 3.5 1.3e-21 76.7 3.5 2.0 1 0 0 1 1 1 1 Translation-initiation factor 2 MMR_HSR1 PF01926.23 gi|134046416|ref|YP_001097901.1| - 2.5e-08 34.0 2.1 3.6e-08 33.5 0.1 2.3 2 1 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 gi|134046416|ref|YP_001097901.1| - 4e-08 33.5 0.4 2.1e-06 28.0 0.0 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 Roc PF08477.13 gi|134046416|ref|YP_001097901.1| - 0.0011 19.2 0.1 0.0059 16.8 0.0 2.3 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|134046416|ref|YP_001097901.1| - 0.0019 18.0 0.0 0.0069 16.2 0.0 2.0 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|134046416|ref|YP_001097901.1| - 0.0037 17.3 0.5 0.63 10.1 0.0 3.1 2 1 1 3 3 3 1 Dynamin family Ras PF00071.22 gi|134046416|ref|YP_001097901.1| - 0.015 14.9 0.0 0.059 13.0 0.0 2.0 1 1 0 1 1 1 0 Ras family PRC PF05239.16 gi|134046416|ref|YP_001097901.1| - 0.047 13.8 0.1 0.49 10.5 0.1 2.6 1 1 1 2 2 2 0 PRC-barrel domain NDK PF00334.19 gi|134046417|ref|YP_001097902.1| - 1.5e-51 174.0 0.0 1.7e-51 173.8 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase ACT_5 PF13710.6 gi|134046417|ref|YP_001097902.1| - 0.014 15.2 0.8 0.067 13.0 0.2 2.1 2 0 0 2 2 2 0 ACT domain AIRC PF00731.20 gi|134046418|ref|YP_001097903.1| - 4.3e-57 191.8 2.7 4.8e-57 191.7 2.7 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH_2 PF13685.6 gi|134046418|ref|YP_001097903.1| - 0.0045 16.7 1.3 0.0053 16.5 0.6 1.5 1 1 1 2 2 2 1 Iron-containing alcohol dehydrogenase cwf21 PF08312.12 gi|134046418|ref|YP_001097903.1| - 0.017 15.2 0.1 0.023 14.8 0.1 1.5 1 1 0 1 1 1 0 cwf21 domain Glutaredoxin PF00462.24 gi|134046418|ref|YP_001097903.1| - 0.16 12.2 0.1 0.39 11.0 0.1 1.6 1 0 0 1 1 1 0 Glutaredoxin T2SSE PF00437.20 gi|134046419|ref|YP_001097904.1| - 4.9e-11 42.2 0.1 1.1e-10 41.1 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.29 gi|134046419|ref|YP_001097904.1| - 1.1e-06 28.4 7.0 1.9e-06 27.6 0.3 3.2 3 0 0 3 3 3 1 KH domain PIN PF01850.21 gi|134046419|ref|YP_001097904.1| - 3.3e-05 24.4 0.1 9.4e-05 22.9 0.1 1.8 1 0 0 1 1 1 1 PIN domain AAA_18 PF13238.6 gi|134046419|ref|YP_001097904.1| - 3.6e-05 24.3 0.0 0.00033 21.2 0.0 2.7 2 1 1 4 4 2 1 AAA domain KH_2 PF07650.17 gi|134046419|ref|YP_001097904.1| - 0.00025 20.8 2.3 0.002 17.9 2.3 2.7 1 0 0 1 1 1 1 KH domain ABC_tran PF00005.27 gi|134046419|ref|YP_001097904.1| - 0.00061 20.3 0.0 0.0062 17.0 0.0 2.4 2 0 0 2 2 2 1 ABC transporter Thymidylate_kin PF02223.17 gi|134046419|ref|YP_001097904.1| - 0.0007 19.3 0.1 0.0044 16.7 0.0 2.4 2 1 1 3 3 2 1 Thymidylate kinase AAA_16 PF13191.6 gi|134046419|ref|YP_001097904.1| - 0.0032 17.9 0.0 0.007 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|134046419|ref|YP_001097904.1| - 0.0048 16.6 0.2 0.015 15.0 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|134046419|ref|YP_001097904.1| - 0.0056 16.6 0.2 0.032 14.1 0.0 2.5 2 0 0 2 2 2 1 NTPase AAA_14 PF13173.6 gi|134046419|ref|YP_001097904.1| - 0.0079 16.2 0.4 0.14 12.2 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|134046419|ref|YP_001097904.1| - 0.008 16.4 0.0 0.018 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|134046419|ref|YP_001097904.1| - 0.014 15.2 0.0 0.033 14.0 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|134046419|ref|YP_001097904.1| - 0.018 14.0 0.0 0.036 13.0 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Viral_helicase1 PF01443.18 gi|134046419|ref|YP_001097904.1| - 0.018 14.8 0.0 0.086 12.6 0.0 2.0 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase PIN_4 PF13638.6 gi|134046419|ref|YP_001097904.1| - 0.02 15.2 0.1 0.086 13.1 0.1 2.1 1 1 0 1 1 1 0 PIN domain Ploopntkinase3 PF18751.1 gi|134046419|ref|YP_001097904.1| - 0.028 14.3 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_33 PF13671.6 gi|134046419|ref|YP_001097904.1| - 0.037 14.2 0.0 0.085 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|134046419|ref|YP_001097904.1| - 0.039 13.2 0.0 0.089 12.1 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|134046419|ref|YP_001097904.1| - 0.04 13.6 0.0 0.57 9.9 0.0 2.5 3 0 0 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|134046419|ref|YP_001097904.1| - 0.044 13.1 0.1 0.17 11.2 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|134046419|ref|YP_001097904.1| - 0.055 13.7 0.0 0.22 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|134046419|ref|YP_001097904.1| - 0.056 13.9 0.0 0.26 11.7 0.0 2.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|134046419|ref|YP_001097904.1| - 0.078 13.1 0.0 0.28 11.3 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|134046419|ref|YP_001097904.1| - 0.094 13.1 0.0 0.25 11.7 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|134046419|ref|YP_001097904.1| - 0.14 12.2 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|134046419|ref|YP_001097904.1| - 0.18 11.7 0.0 0.38 10.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain PIN_9 PF18477.1 gi|134046419|ref|YP_001097904.1| - 0.39 11.0 2.4 7.4 6.9 0.6 3.1 2 1 0 2 2 2 0 PIN like domain PRA-CH PF01502.18 gi|134046420|ref|YP_001097905.1| - 1.3e-31 108.2 0.7 1.7e-31 107.8 0.7 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase GHMP_kinases_C PF08544.13 gi|134046421|ref|YP_001097906.1| - 2.3e-05 24.7 0.0 7.8e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|134046421|ref|YP_001097906.1| - 0.0022 18.2 1.6 0.0044 17.2 1.6 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF2625 PF10946.8 gi|134046421|ref|YP_001097906.1| - 0.17 10.9 0.0 0.27 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF2625 CBS PF00571.28 gi|134046422|ref|YP_001097907.1| - 3.6e-31 107.4 2.4 6.1e-15 55.4 0.2 2.2 2 0 0 2 2 2 2 CBS domain CDC37_C PF08564.10 gi|134046422|ref|YP_001097907.1| - 0.024 14.8 1.4 17 5.6 0.0 3.0 2 1 1 3 3 3 0 Cdc37 C terminal domain TraB PF01963.17 gi|134046423|ref|YP_001097908.1| - 1.1e-29 104.1 0.0 1.9e-29 103.4 0.0 1.3 1 0 0 1 1 1 1 TraB family DUF5645 PF18713.1 gi|134046423|ref|YP_001097908.1| - 0.12 12.7 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5645) DUF5325 PF17259.2 gi|134046423|ref|YP_001097908.1| - 1.2 9.0 6.6 7.4 6.5 2.0 2.8 2 0 0 2 2 2 0 Family of unknown function (DUF5325) NosD PF05048.13 gi|134046424|ref|YP_001097909.1| - 1.5e-59 201.2 65.8 4.6e-47 160.3 40.4 2.9 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Big_7 PF17957.1 gi|134046424|ref|YP_001097909.1| - 1.5e-25 89.7 15.2 1.3e-09 38.6 1.5 4.5 4 0 0 4 4 4 3 Bacterial Ig domain Beta_helix PF13229.6 gi|134046424|ref|YP_001097909.1| - 2e-25 89.5 80.7 5.2e-13 49.2 21.0 4.6 2 1 1 4 4 4 2 Right handed beta helix region Big_3_4 PF13754.6 gi|134046424|ref|YP_001097909.1| - 0.00055 19.6 1.1 0.6 9.9 0.2 3.7 3 0 0 3 3 3 1 Domain of unknown function Y_Y_Y PF07495.13 gi|134046424|ref|YP_001097909.1| - 0.078 12.9 9.3 0.22 11.5 0.2 4.1 3 0 0 3 3 3 0 Y_Y_Y domain Cornifin PF02389.15 gi|134046424|ref|YP_001097909.1| - 1.7 8.9 20.5 3.1 8.0 20.5 1.3 1 0 0 1 1 1 0 Cornifin (SPRR) family AIRS_C PF02769.22 gi|134046425|ref|YP_001097910.1| - 4.1e-34 118.0 1.7 7e-34 117.2 1.7 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|134046425|ref|YP_001097910.1| - 7.7e-20 71.4 0.2 1.8e-19 70.2 0.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain ComA PF02679.15 gi|134046426|ref|YP_001097911.1| - 4.7e-85 284.9 0.4 5.2e-85 284.8 0.4 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) Isochorismatase PF00857.20 gi|134046426|ref|YP_001097911.1| - 0.012 15.8 0.0 0.024 14.8 0.0 1.5 1 1 0 1 1 1 0 Isochorismatase family EF-hand_8 PF13833.6 gi|134046426|ref|YP_001097911.1| - 0.081 12.8 0.1 0.27 11.1 0.1 2.0 1 1 0 1 1 1 0 EF-hand domain pair ABC_tran PF00005.27 gi|134046427|ref|YP_001097912.1| - 3.2e-13 50.4 0.1 5.7e-13 49.6 0.1 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|134046427|ref|YP_001097912.1| - 3.9e-10 40.0 0.1 1.1e-07 32.0 0.1 2.6 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|134046427|ref|YP_001097912.1| - 1.8e-06 27.6 0.2 3.7e-06 26.5 0.2 1.5 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|134046427|ref|YP_001097912.1| - 0.0062 16.8 0.1 0.079 13.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|134046427|ref|YP_001097912.1| - 0.025 14.3 0.1 0.1 12.3 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|134046427|ref|YP_001097912.1| - 0.053 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|134046427|ref|YP_001097912.1| - 0.071 13.0 0.5 1.1 9.2 0.5 2.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DUF87 PF01935.17 gi|134046427|ref|YP_001097912.1| - 0.08 13.0 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_23 PF13476.6 gi|134046427|ref|YP_001097912.1| - 0.08 13.4 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|134046427|ref|YP_001097912.1| - 0.1 13.0 0.0 0.24 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|134046428|ref|YP_001097913.1| - 1.2e-15 57.6 0.0 1.9e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|134046428|ref|YP_001097913.1| - 2.6e-06 26.6 0.4 0.0015 17.6 0.1 2.4 2 1 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|134046428|ref|YP_001097913.1| - 0.00045 19.5 0.0 0.0012 18.2 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin SRP54 PF00448.22 gi|134046428|ref|YP_001097913.1| - 0.00063 19.4 0.1 0.007 16.0 0.1 2.5 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.14 gi|134046428|ref|YP_001097913.1| - 0.0013 18.7 0.1 0.0035 17.2 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 gi|134046428|ref|YP_001097913.1| - 0.0015 18.9 0.1 0.0033 17.7 0.1 1.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|134046428|ref|YP_001097913.1| - 0.0029 18.1 0.0 0.0073 16.9 0.0 1.7 2 0 0 2 2 1 1 AAA domain TrwB_AAD_bind PF10412.9 gi|134046428|ref|YP_001097913.1| - 0.016 14.1 0.1 0.024 13.6 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF917 PF06032.12 gi|134046428|ref|YP_001097913.1| - 0.018 13.9 0.1 0.035 12.9 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF917) CbiA PF01656.23 gi|134046428|ref|YP_001097913.1| - 0.019 15.0 0.2 0.019 15.0 0.2 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2075 PF09848.9 gi|134046428|ref|YP_001097913.1| - 0.023 13.9 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|134046428|ref|YP_001097913.1| - 0.025 14.9 0.0 0.041 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|134046428|ref|YP_001097913.1| - 0.031 14.7 0.0 0.034 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain ATP_bind_1 PF03029.17 gi|134046428|ref|YP_001097913.1| - 0.036 13.8 0.3 0.11 12.2 0.1 1.8 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein Viral_helicase1 PF01443.18 gi|134046428|ref|YP_001097913.1| - 0.04 13.7 0.1 0.063 13.0 0.1 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_24 PF13479.6 gi|134046428|ref|YP_001097913.1| - 0.042 13.6 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|134046428|ref|YP_001097913.1| - 0.042 13.8 0.1 0.074 13.1 0.1 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DnaB_C PF03796.15 gi|134046428|ref|YP_001097913.1| - 0.055 12.8 0.1 0.087 12.1 0.1 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Zot PF05707.12 gi|134046428|ref|YP_001097913.1| - 0.058 13.0 0.0 0.5 10.0 0.0 2.1 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) UvrD-helicase PF00580.21 gi|134046428|ref|YP_001097913.1| - 0.087 12.3 0.2 0.14 11.7 0.2 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain CLP1_P PF16575.5 gi|134046428|ref|YP_001097913.1| - 0.11 12.3 0.1 0.4 10.4 0.1 2.0 1 1 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MMR_HSR1 PF01926.23 gi|134046428|ref|YP_001097913.1| - 0.12 12.5 0.0 2.5 8.2 0.0 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase PRK PF00485.18 gi|134046428|ref|YP_001097913.1| - 0.14 11.9 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.6 gi|134046428|ref|YP_001097913.1| - 0.19 11.5 0.3 0.29 10.8 0.3 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|134046428|ref|YP_001097913.1| - 0.19 11.9 0.4 0.43 10.7 0.4 1.9 1 1 1 2 2 2 0 AAA domain FeS PF04060.13 gi|134046429|ref|YP_001097914.1| - 6e-12 45.0 2.6 1.3e-11 44.0 2.6 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster DUF111 PF01969.17 gi|134046430|ref|YP_001097915.1| - 2.6e-99 332.8 0.0 2.9e-99 332.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 4_1_CTD PF05902.13 gi|134046430|ref|YP_001097915.1| - 0.0013 18.8 0.1 0.0048 16.9 0.0 1.9 2 0 0 2 2 2 1 4.1 protein C-terminal domain (CTD) KHA PF11834.8 gi|134046430|ref|YP_001097915.1| - 0.04 14.0 0.1 0.14 12.2 0.1 2.0 1 0 0 1 1 1 0 KHA, dimerisation domain of potassium ion channel PseudoU_synth_1 PF01416.20 gi|134046431|ref|YP_001097916.1| - 1.1e-20 74.1 0.0 8.7e-20 71.2 0.0 2.0 2 0 0 2 2 2 1 tRNA pseudouridine synthase MarC PF01914.17 gi|134046433|ref|YP_001097918.1| - 9e-57 191.7 18.8 1e-56 191.6 18.8 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein RseC_MucC PF04246.12 gi|134046433|ref|YP_001097918.1| - 0.68 9.9 5.2 3.3 7.7 0.4 2.5 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC NicO PF03824.16 gi|134046434|ref|YP_001097919.1| - 1.8e-15 57.0 18.0 1.7e-08 34.2 8.1 2.1 1 1 1 2 2 2 2 High-affinity nickel-transport protein DsbD_2 PF13386.6 gi|134046434|ref|YP_001097919.1| - 3.8e-08 33.5 14.1 2.3e-06 27.7 14.1 2.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD PF02683.15 gi|134046434|ref|YP_001097919.1| - 1.1e-05 25.5 17.3 8e-05 22.6 14.7 2.1 1 1 1 2 2 2 1 Cytochrome C biogenesis protein transmembrane region DUF2162 PF09930.9 gi|134046434|ref|YP_001097919.1| - 1.7e-05 24.4 11.9 2.7e-05 23.7 11.9 1.3 1 0 0 1 1 1 1 Predicted transporter (DUF2162) SfLAP PF11139.8 gi|134046434|ref|YP_001097919.1| - 0.0013 18.3 6.3 0.13 11.7 0.4 2.1 2 0 0 2 2 2 2 Sap, sulfolipid-1-addressing protein Tetraspanin PF00335.20 gi|134046434|ref|YP_001097919.1| - 0.0082 15.9 2.9 0.0082 15.9 2.9 2.6 1 1 2 3 3 3 1 Tetraspanin family DMT_YdcZ PF04657.13 gi|134046435|ref|YP_001097920.1| - 1.3e-32 113.0 16.3 1.4e-32 112.8 16.3 1.0 1 0 0 1 1 1 1 Putative inner membrane exporter, YdcZ TMEM144 PF07857.12 gi|134046435|ref|YP_001097920.1| - 0.00053 19.1 10.3 0.0006 18.9 10.3 1.2 1 0 0 1 1 1 1 Transmembrane family, TMEM144 of transporters DUF2231 PF09990.9 gi|134046435|ref|YP_001097920.1| - 0.00059 20.2 0.7 0.0011 19.4 0.4 1.5 1 1 0 1 1 1 1 Predicted membrane protein (DUF2231) EamA PF00892.20 gi|134046435|ref|YP_001097920.1| - 0.0014 18.8 18.8 0.0018 18.5 18.8 1.1 1 0 0 1 1 1 1 EamA-like transporter family SAYSvFN PF10260.9 gi|134046435|ref|YP_001097920.1| - 0.075 13.0 0.8 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved domain (SAYSvFN) MS_channel PF00924.18 gi|134046436|ref|YP_001097921.1| - 3.2e-60 203.2 2.1 5.1e-60 202.6 2.1 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel tRNA-synt_1b PF00579.25 gi|134046437|ref|YP_001097922.1| - 4.1e-48 164.2 0.0 5.1e-48 163.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|134046437|ref|YP_001097922.1| - 5.7e-05 22.2 0.4 0.061 12.2 0.0 2.9 2 1 0 3 3 3 2 tRNA synthetases class I (K) DUF2067 PF09840.9 gi|134046438|ref|YP_001097923.1| - 6.6e-52 175.8 10.9 7.6e-52 175.6 10.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) RNA_pol_L_2 PF13656.6 gi|134046439|ref|YP_001097924.1| - 3.6e-16 58.7 0.1 4.8e-16 58.3 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|134046439|ref|YP_001097924.1| - 4.2e-06 26.1 0.1 9.8e-06 24.9 0.1 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain ProRS-C_2 PF09181.10 gi|134046439|ref|YP_001097924.1| - 0.004 17.3 0.7 0.0071 16.5 0.1 1.7 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal DUF2738 PF10927.8 gi|134046439|ref|YP_001097924.1| - 0.056 12.5 0.1 0.059 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2738) Ribosomal_L1 PF00687.21 gi|134046440|ref|YP_001097925.1| - 9.2e-41 139.8 0.0 1.1e-40 139.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|134046441|ref|YP_001097926.1| - 1.2e-21 76.7 2.3 1.9e-21 76.0 0.6 2.1 2 1 0 2 2 2 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|134046441|ref|YP_001097926.1| - 2.9e-18 65.6 0.1 5.4e-18 64.8 0.1 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|134046441|ref|YP_001097926.1| - 3.2e-06 27.6 13.7 1.2e-05 25.8 13.7 2.1 1 1 0 1 1 1 1 60s Acidic ribosomal protein DUF5030 PF16433.5 gi|134046441|ref|YP_001097926.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5030) 7TMR-HDED PF07697.11 gi|134046441|ref|YP_001097926.1| - 0.41 10.7 4.4 0.4 10.8 0.3 2.6 3 0 0 3 3 3 0 7TM-HD extracellular Ribosomal_60s PF00428.19 gi|134046442|ref|YP_001097927.1| - 4.7e-13 49.5 18.7 6.4e-13 49.1 18.7 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein AnmK PF03702.14 gi|134046442|ref|YP_001097927.1| - 0.007 15.5 1.5 0.0075 15.4 1.5 1.0 1 0 0 1 1 1 1 Anhydro-N-acetylmuramic acid kinase TetR_C_31 PF17940.1 gi|134046442|ref|YP_001097927.1| - 0.022 15.0 2.5 0.022 15.0 2.5 1.4 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TBP PF00352.21 gi|134046443|ref|YP_001097928.1| - 1.2e-55 185.5 0.0 7.2e-27 93.2 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|134046443|ref|YP_001097928.1| - 5.3e-05 23.2 0.0 0.0081 16.3 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) NdhS PF11623.8 gi|134046443|ref|YP_001097928.1| - 0.0017 17.9 0.0 2.2 8.0 0.0 2.5 2 1 0 2 2 2 2 NAD(P)H dehydrogenase subunit S Metaviral_G PF09595.10 gi|134046443|ref|YP_001097928.1| - 0.22 11.6 0.0 0.43 10.6 0.0 1.4 2 0 0 2 2 2 0 Metaviral_G glycoprotein GATase PF00117.28 gi|134046444|ref|YP_001097929.1| - 1.2e-23 83.9 0.0 1.4e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|134046444|ref|YP_001097929.1| - 9e-07 28.9 0.1 2e-06 27.8 0.1 1.5 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|134046444|ref|YP_001097929.1| - 0.00014 21.7 0.4 0.0018 18.1 0.4 2.2 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 gi|134046444|ref|YP_001097929.1| - 0.00083 19.0 0.1 0.0013 18.4 0.1 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain UPRTase PF14681.6 gi|134046444|ref|YP_001097929.1| - 0.18 11.2 0.0 0.29 10.6 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PHP_C PF13263.6 gi|134046445|ref|YP_001097930.1| - 5e-11 42.2 0.0 1.1e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|134046445|ref|YP_001097930.1| - 3.3e-09 37.3 0.0 5.2e-09 36.6 0.0 1.5 1 1 0 1 1 1 1 PHP domain Carb_kinase PF01256.17 gi|134046446|ref|YP_001097931.1| - 3.2e-49 167.6 0.0 1.2e-48 165.8 0.0 1.9 2 0 0 2 2 2 1 Carbohydrate kinase YjeF_N PF03853.15 gi|134046446|ref|YP_001097931.1| - 1.1e-24 87.3 0.0 1.9e-24 86.4 0.0 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus DUF4973 PF16343.5 gi|134046446|ref|YP_001097931.1| - 0.12 12.4 2.5 0.23 11.5 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4973) ATP-grasp_5 PF13549.6 gi|134046447|ref|YP_001097932.1| - 3.7e-53 180.2 0.1 1.1e-52 178.7 0.1 1.7 2 0 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|134046447|ref|YP_001097932.1| - 2.4e-52 176.4 0.2 7.7e-52 174.8 0.0 1.9 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|134046447|ref|YP_001097932.1| - 3.3e-24 85.6 0.1 4.2e-23 82.1 0.1 2.9 4 0 0 4 4 4 1 CoA binding domain CoA_binding PF02629.19 gi|134046447|ref|YP_001097932.1| - 1.5e-13 51.3 0.2 4.1e-13 49.8 0.2 1.9 1 0 0 1 1 1 1 CoA binding domain GARS_A PF01071.19 gi|134046447|ref|YP_001097932.1| - 7.1e-05 22.7 1.7 0.0028 17.5 0.5 3.1 4 0 0 4 4 4 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Endopep_inhib PF16800.5 gi|134046447|ref|YP_001097932.1| - 0.001 19.0 0.5 0.0035 17.3 0.5 1.9 1 0 0 1 1 1 1 IseA DL-endopeptidase inhibitor Ligase_CoA PF00549.19 gi|134046447|ref|YP_001097932.1| - 0.0037 17.1 0.0 0.28 11.0 0.0 2.6 2 0 0 2 2 2 1 CoA-ligase ATP-grasp_2 PF08442.10 gi|134046447|ref|YP_001097932.1| - 0.0065 16.0 0.1 0.014 15.0 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain Semialdhyde_dh PF01118.24 gi|134046447|ref|YP_001097932.1| - 0.052 14.0 1.1 26 5.3 0.1 3.9 3 1 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|134046447|ref|YP_001097932.1| - 0.11 13.1 0.9 5.4 7.7 0.0 3.3 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Proteasome PF00227.26 gi|134046449|ref|YP_001097934.1| - 1.9e-66 223.2 0.5 3.2e-66 222.5 0.5 1.3 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|134046449|ref|YP_001097934.1| - 3.4e-14 52.2 0.7 1.1e-13 50.6 0.1 2.1 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature Spore_III_AB PF09548.10 gi|134046449|ref|YP_001097934.1| - 0.097 12.8 0.6 0.15 12.1 0.6 1.3 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) DUF1623 PF07785.11 gi|134046449|ref|YP_001097934.1| - 0.69 10.1 2.7 13 6.0 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1623) SBDS PF01172.18 gi|134046450|ref|YP_001097935.1| - 3.1e-22 78.5 0.2 7.2e-22 77.3 0.0 1.7 2 0 0 2 2 2 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|134046450|ref|YP_001097935.1| - 1.4e-21 76.6 0.1 2.3e-21 75.9 0.1 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain UPF0262 PF06793.12 gi|134046450|ref|YP_001097935.1| - 0.018 15.1 0.1 0.03 14.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0262) EFG_C PF00679.24 gi|134046450|ref|YP_001097935.1| - 0.1 12.7 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 Elongation factor G C-terminus Ribosomal_L37ae PF01780.19 gi|134046451|ref|YP_001097936.1| - 1.3e-32 111.7 4.7 1.5e-32 111.5 4.7 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family RPA_interact_C PF14768.6 gi|134046451|ref|YP_001097936.1| - 0.017 15.7 0.0 0.021 15.4 0.0 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zf-H2C2_2 PF13465.6 gi|134046451|ref|YP_001097936.1| - 0.028 14.8 2.3 0.57 10.7 0.7 2.4 2 0 0 2 2 2 0 Zinc-finger double domain Prok-RING_1 PF14446.6 gi|134046451|ref|YP_001097936.1| - 0.031 14.2 0.8 0.05 13.5 0.8 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 gi|134046451|ref|YP_001097936.1| - 0.036 13.6 1.2 0.074 12.6 1.2 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding Sgf11 PF08209.11 gi|134046451|ref|YP_001097936.1| - 0.076 12.6 0.4 1.4 8.6 0.0 2.5 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Rad50_zn_hook PF04423.14 gi|134046451|ref|YP_001097936.1| - 0.08 12.8 0.3 0.17 11.8 0.3 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif OrfB_Zn_ribbon PF07282.11 gi|134046451|ref|YP_001097936.1| - 0.14 12.1 1.1 0.37 10.7 0.9 1.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.6 gi|134046451|ref|YP_001097936.1| - 0.15 11.4 1.5 0.48 9.8 1.5 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-Sec23_Sec24 PF04810.15 gi|134046451|ref|YP_001097936.1| - 0.18 11.9 2.2 3.3 7.8 1.9 2.1 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zinc_ribbon_2 PF13240.6 gi|134046451|ref|YP_001097936.1| - 0.21 11.4 3.2 0.67 9.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|134046451|ref|YP_001097936.1| - 0.26 11.3 3.5 2.2 8.3 3.5 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Zn_ribbon_SprT PF17283.2 gi|134046451|ref|YP_001097936.1| - 0.36 10.8 3.4 0.4 10.6 1.7 1.9 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|134046451|ref|YP_001097936.1| - 0.91 9.9 7.7 21 5.5 7.7 2.4 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Rubredoxin PF00301.20 gi|134046451|ref|YP_001097936.1| - 2.8 8.1 6.1 5.6 7.1 0.5 2.5 2 1 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.10 gi|134046452|ref|YP_001097937.1| - 1e-05 25.5 0.3 1.5e-05 25.0 0.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|134046452|ref|YP_001097937.1| - 3.5e-05 23.0 0.9 0.0081 15.5 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zf-C2HC5 PF06221.13 gi|134046452|ref|YP_001097937.1| - 5.2e-05 23.1 0.6 6.1e-05 22.9 0.6 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DNA_RNApol_7kD PF03604.13 gi|134046452|ref|YP_001097937.1| - 0.00016 21.3 2.4 0.00027 20.5 2.4 1.4 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Desulfoferrod_N PF06397.12 gi|134046452|ref|YP_001097937.1| - 0.00028 20.4 2.3 0.0093 15.6 0.2 2.1 1 1 1 2 2 2 1 Desulfoferrodoxin, N-terminal domain HypA PF01155.19 gi|134046452|ref|YP_001097937.1| - 0.0011 19.0 0.3 0.0011 19.0 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|134046452|ref|YP_001097937.1| - 0.0014 18.2 0.3 0.002 17.8 0.3 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zf-LITAF-like PF10601.9 gi|134046452|ref|YP_001097937.1| - 0.0034 17.6 0.4 1.3 9.3 0.1 2.1 2 0 0 2 2 2 1 LITAF-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|134046452|ref|YP_001097937.1| - 0.0047 16.8 1.4 1.8 8.5 0.1 2.1 2 0 0 2 2 2 2 SprT-like zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|134046452|ref|YP_001097937.1| - 0.0064 16.6 0.4 0.0074 16.4 0.4 1.2 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf_UBZ PF18439.1 gi|134046452|ref|YP_001097937.1| - 0.0073 15.9 0.7 0.56 9.9 0.0 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DUF1451 PF07295.11 gi|134046452|ref|YP_001097937.1| - 0.0078 16.3 0.6 0.0088 16.1 0.6 1.1 1 0 0 1 1 1 1 Zinc-ribbon containing domain zinc_ribbon_2 PF13240.6 gi|134046452|ref|YP_001097937.1| - 0.0079 15.9 2.7 0.72 9.7 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-RING_7 PF02591.15 gi|134046452|ref|YP_001097937.1| - 0.0095 16.1 2.2 3.9 7.7 0.1 2.9 3 0 0 3 3 3 1 C4-type zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|134046452|ref|YP_001097937.1| - 0.012 15.6 0.3 0.014 15.4 0.3 1.2 1 0 0 1 1 1 0 zinc-ribbons RNHCP PF12647.7 gi|134046452|ref|YP_001097937.1| - 0.012 15.5 0.3 0.012 15.5 0.3 1.1 1 0 0 1 1 1 0 RNHCP domain TF_Zn_Ribbon PF08271.12 gi|134046452|ref|YP_001097937.1| - 0.018 14.6 3.7 0.39 10.3 0.1 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.6 gi|134046452|ref|YP_001097937.1| - 0.018 15.1 0.3 0.018 15.1 0.3 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain Lar_restr_allev PF14354.6 gi|134046452|ref|YP_001097937.1| - 0.025 15.0 0.5 0.38 11.2 0.0 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar DZR PF12773.7 gi|134046452|ref|YP_001097937.1| - 0.031 14.3 2.0 0.68 10.0 2.5 1.9 1 1 0 1 1 1 0 Double zinc ribbon DUF951 PF06107.11 gi|134046452|ref|YP_001097937.1| - 0.033 14.1 4.1 1.1 9.2 0.8 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) Zn_Tnp_IS1595 PF12760.7 gi|134046452|ref|YP_001097937.1| - 0.036 14.1 4.9 0.18 11.8 0.3 2.1 1 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.6 gi|134046452|ref|YP_001097937.1| - 0.039 14.6 1.6 1.5 9.6 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HIT PF04438.16 gi|134046452|ref|YP_001097937.1| - 0.063 13.2 3.9 0.39 10.6 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger TFIIS_C PF01096.18 gi|134046452|ref|YP_001097937.1| - 0.074 12.9 2.0 6.8 6.6 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) CpXC PF14353.6 gi|134046452|ref|YP_001097937.1| - 0.09 12.8 1.4 9.1 6.4 0.1 2.1 1 1 1 2 2 2 0 CpXC protein OrfB_Zn_ribbon PF07282.11 gi|134046452|ref|YP_001097937.1| - 0.096 12.6 1.3 0.14 12.1 1.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF35_N PF12172.8 gi|134046452|ref|YP_001097937.1| - 0.12 12.3 2.7 6.5 6.7 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|134046452|ref|YP_001097937.1| - 0.15 12.0 9.3 0.44 10.5 5.0 2.5 2 1 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|134046452|ref|YP_001097937.1| - 0.25 11.0 3.3 1.7 8.4 0.2 2.1 1 1 1 2 2 2 0 Ribosomal protein S27 zinc_ribbon_5 PF13719.6 gi|134046452|ref|YP_001097937.1| - 0.28 11.0 3.4 3.5 7.5 3.4 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|134046452|ref|YP_001097937.1| - 0.35 10.6 0.5 0.35 10.6 0.5 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Brix PF04427.18 gi|134046453|ref|YP_001097938.1| - 0.0013 18.9 1.9 0.0046 17.1 1.9 1.8 1 1 0 1 1 1 1 Brix domain Pcc1 PF09341.10 gi|134046454|ref|YP_001097939.1| - 5.7e-09 36.0 0.0 6.4e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 INTS2 PF14750.6 gi|134046454|ref|YP_001097939.1| - 0.013 13.1 0.1 0.014 13.0 0.1 1.0 1 0 0 1 1 1 0 Integrator complex subunit 2 HTH_22 PF13309.6 gi|134046454|ref|YP_001097939.1| - 0.053 13.6 0.0 0.089 12.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain Prefoldin_2 PF01920.20 gi|134046455|ref|YP_001097940.1| - 7.1e-27 93.5 23.2 7.9e-27 93.3 23.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit BLOC1_2 PF10046.9 gi|134046455|ref|YP_001097940.1| - 0.0014 18.8 13.8 0.12 12.7 3.9 2.1 2 0 0 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|134046455|ref|YP_001097940.1| - 0.0044 15.9 12.9 0.013 14.4 1.6 2.0 2 0 0 2 2 2 2 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|134046455|ref|YP_001097940.1| - 0.0099 16.2 3.7 0.0099 16.2 3.7 2.5 2 1 1 3 3 3 1 Flagella accessory protein C (FlaC) SNF2_N PF00176.23 gi|134046455|ref|YP_001097940.1| - 0.01 14.6 3.8 0.013 14.3 3.8 1.1 1 0 0 1 1 1 0 SNF2 family N-terminal domain DUF1664 PF07889.12 gi|134046455|ref|YP_001097940.1| - 0.013 15.5 9.7 0.49 10.4 2.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|134046455|ref|YP_001097940.1| - 0.02 15.4 5.0 1.2 9.6 0.2 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF919 PF06034.11 gi|134046455|ref|YP_001097940.1| - 0.025 14.4 4.3 0.025 14.4 4.3 2.6 1 1 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) TPR_MLP1_2 PF07926.12 gi|134046455|ref|YP_001097940.1| - 0.044 13.8 15.6 0.51 10.4 3.1 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein CLZ PF16526.5 gi|134046455|ref|YP_001097940.1| - 0.045 14.1 12.1 0.076 13.4 2.5 2.3 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CENP-F_leu_zip PF10473.9 gi|134046455|ref|YP_001097940.1| - 0.049 13.6 17.7 0.064 13.3 4.2 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4200 PF13863.6 gi|134046455|ref|YP_001097940.1| - 0.05 14.0 7.0 0.05 14.0 7.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) FAA_hydro_N_2 PF18288.1 gi|134046455|ref|YP_001097940.1| - 0.07 13.6 4.3 3.8 8.0 0.1 2.1 1 1 1 2 2 2 0 Fumarylacetoacetase N-terminal domain 2 XhlA PF10779.9 gi|134046455|ref|YP_001097940.1| - 0.078 13.2 7.6 0.66 10.2 1.8 2.3 2 0 0 2 2 2 0 Haemolysin XhlA FUSC PF04632.12 gi|134046455|ref|YP_001097940.1| - 0.095 11.2 0.8 0.1 11.1 0.8 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family ParD_antitoxin PF03693.14 gi|134046455|ref|YP_001097940.1| - 0.14 12.5 1.1 0.2 12.1 0.1 1.8 2 1 0 2 2 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH DUF4407 PF14362.6 gi|134046455|ref|YP_001097940.1| - 0.15 11.4 5.8 0.18 11.1 5.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HemX PF04375.14 gi|134046455|ref|YP_001097940.1| - 0.15 11.3 19.1 0.64 9.2 18.3 1.8 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Cu-oxidase_4 PF02578.15 gi|134046455|ref|YP_001097940.1| - 0.15 11.6 1.2 0.15 11.7 0.4 1.4 1 1 0 1 1 1 0 Multi-copper polyphenol oxidoreductase laccase Phage_GP20 PF06810.11 gi|134046455|ref|YP_001097940.1| - 0.16 11.8 12.9 0.18 11.6 1.4 2.1 1 1 1 2 2 2 0 Phage minor structural protein GP20 EspB PF05802.11 gi|134046455|ref|YP_001097940.1| - 0.22 11.5 9.0 0.058 13.4 5.3 1.6 1 1 1 2 2 2 0 Enterobacterial EspB protein FliD_C PF07195.12 gi|134046455|ref|YP_001097940.1| - 0.22 10.9 14.3 0.13 11.6 0.6 2.0 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus AMP-binding_C_2 PF14535.6 gi|134046455|ref|YP_001097940.1| - 0.3 11.4 6.1 0.42 11.0 6.1 1.3 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain GvpG PF05120.12 gi|134046455|ref|YP_001097940.1| - 0.32 11.0 9.6 2.4 8.2 2.2 2.2 2 0 0 2 2 2 0 Gas vesicle protein G Nsp1_C PF05064.13 gi|134046455|ref|YP_001097940.1| - 0.33 10.8 13.4 0.039 13.8 5.3 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF4795 PF16043.5 gi|134046455|ref|YP_001097940.1| - 0.41 10.2 17.0 1.3 8.6 17.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Peptidase_C65 PF10275.9 gi|134046455|ref|YP_001097940.1| - 0.42 10.0 11.4 0.44 10.0 3.4 2.0 1 1 1 2 2 2 0 Peptidase C65 Otubain JIP_LZII PF16471.5 gi|134046455|ref|YP_001097940.1| - 0.56 10.4 16.0 1.2 9.3 5.8 2.3 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II Jnk-SapK_ap_N PF09744.9 gi|134046455|ref|YP_001097940.1| - 0.58 10.4 19.9 1.4 9.1 19.9 1.5 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 HAUS-augmin3 PF14932.6 gi|134046455|ref|YP_001097940.1| - 0.67 9.5 16.6 1.2 8.7 5.0 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 DUF1690 PF07956.11 gi|134046455|ref|YP_001097940.1| - 0.67 10.4 11.1 1.1 9.7 11.1 1.4 1 1 0 1 1 1 0 Protein of Unknown function (DUF1690) Tho2 PF11262.8 gi|134046455|ref|YP_001097940.1| - 0.72 9.0 8.4 0.94 8.6 8.4 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Occludin_ELL PF07303.13 gi|134046455|ref|YP_001097940.1| - 0.76 10.5 11.8 3.4 8.5 2.8 2.1 2 0 0 2 2 2 0 Occludin homology domain FapA PF03961.13 gi|134046455|ref|YP_001097940.1| - 0.99 7.9 14.1 1.5 7.3 14.1 1.4 1 1 0 1 1 1 0 Flagellar Assembly Protein A Tektin PF03148.14 gi|134046455|ref|YP_001097940.1| - 1 8.0 16.6 3.3 6.4 16.6 1.7 1 1 0 1 1 1 0 Tektin family Cortex-I_coil PF09304.10 gi|134046455|ref|YP_001097940.1| - 1.1 9.6 12.7 1.5 9.1 3.4 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil Tropomyosin_1 PF12718.7 gi|134046455|ref|YP_001097940.1| - 1.2 9.3 17.9 2.3 8.4 4.2 2.0 1 1 1 2 2 2 0 Tropomyosin like Fib_alpha PF08702.10 gi|134046455|ref|YP_001097940.1| - 1.2 9.3 14.0 3.1 8.0 14.0 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family V_ATPase_I PF01496.19 gi|134046455|ref|YP_001097940.1| - 1.3 6.9 11.7 1.5 6.7 11.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family GrpE PF01025.19 gi|134046455|ref|YP_001097940.1| - 1.4 8.6 16.3 3 7.5 5.1 2.0 2 0 0 2 2 2 0 GrpE RmuC PF02646.16 gi|134046455|ref|YP_001097940.1| - 1.4 7.9 15.0 0.66 9.0 3.5 2.1 1 1 0 2 2 2 0 RmuC family Ribosomal_S20p PF01649.18 gi|134046455|ref|YP_001097940.1| - 1.6 9.5 5.4 90 3.8 5.4 2.4 1 1 0 1 1 1 0 Ribosomal protein S20 Uso1_p115_C PF04871.13 gi|134046455|ref|YP_001097940.1| - 2.2 8.7 16.1 7.2 7.0 16.0 1.8 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region ABC1 PF03109.16 gi|134046455|ref|YP_001097940.1| - 2.5 8.3 7.9 1.3 9.2 0.8 2.0 1 1 1 2 2 2 0 ABC1 family YvrJ PF12841.7 gi|134046455|ref|YP_001097940.1| - 2.6 7.7 4.3 1.4 8.5 0.5 2.4 3 0 0 3 3 3 0 YvrJ protein family PRP1_N PF06424.12 gi|134046455|ref|YP_001097940.1| - 2.8 8.3 10.7 5.4 7.4 10.7 1.5 1 1 0 1 1 1 0 PRP1 splicing factor, N-terminal DASH_Dam1 PF08653.10 gi|134046455|ref|YP_001097940.1| - 2.9 7.8 7.0 5.5 6.9 0.1 3.2 2 2 1 3 3 3 0 DASH complex subunit Dam1 OmpH PF03938.14 gi|134046455|ref|YP_001097940.1| - 3.4 8.0 26.5 7.9 6.8 26.5 1.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) FAM76 PF16046.5 gi|134046455|ref|YP_001097940.1| - 3.5 6.9 12.1 4.7 6.5 12.1 1.2 1 0 0 1 1 1 0 FAM76 protein ATG16 PF08614.11 gi|134046455|ref|YP_001097940.1| - 3.6 7.8 18.2 2.2 8.5 5.0 2.0 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Laminin_II PF06009.12 gi|134046455|ref|YP_001097940.1| - 3.6 7.6 9.7 2.1e+02 1.9 9.8 2.1 1 1 0 1 1 1 0 Laminin Domain II DUF3450 PF11932.8 gi|134046455|ref|YP_001097940.1| - 3.6 6.8 18.5 2.6 7.3 6.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Spc24 PF08286.11 gi|134046455|ref|YP_001097940.1| - 4 7.7 15.8 5.2 7.4 3.6 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 bZIP_1 PF00170.21 gi|134046455|ref|YP_001097940.1| - 4.1 7.6 17.4 0.62 10.2 4.7 2.4 2 1 0 2 2 2 0 bZIP transcription factor Cep57_MT_bd PF06657.13 gi|134046455|ref|YP_001097940.1| - 4.3 7.8 16.2 0.55 10.7 2.4 2.4 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Nup54 PF13874.6 gi|134046455|ref|YP_001097940.1| - 4.7 7.3 14.9 24 5.0 14.9 1.9 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DUF745 PF05335.13 gi|134046455|ref|YP_001097940.1| - 4.9 6.8 14.0 13 5.4 14.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF745) YabA PF06156.13 gi|134046455|ref|YP_001097940.1| - 5.8 7.6 16.1 1.3e+03 0.1 15.9 2.2 1 1 0 1 1 1 0 Initiation control protein YabA NuA4 PF09340.10 gi|134046455|ref|YP_001097940.1| - 6.5 6.7 12.1 0.82 9.6 2.8 2.7 1 1 2 3 3 3 0 Histone acetyltransferase subunit NuA4 Seryl_tRNA_N PF02403.22 gi|134046455|ref|YP_001097940.1| - 7 6.9 14.5 4.8 7.5 3.9 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain BST2 PF16716.5 gi|134046455|ref|YP_001097940.1| - 7 7.3 15.5 13 6.5 3.4 2.5 2 0 0 2 2 2 0 Bone marrow stromal antigen 2 Prefoldin PF02996.17 gi|134046455|ref|YP_001097940.1| - 7.1 6.6 19.0 0.25 11.2 5.0 2.6 1 1 0 2 2 2 0 Prefoldin subunit DUF4446 PF14584.6 gi|134046455|ref|YP_001097940.1| - 8.9 6.3 14.8 6.7 6.7 3.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Spore_II_R PF09551.10 gi|134046455|ref|YP_001097940.1| - 9 6.8 9.0 12 6.4 2.8 2.0 2 0 0 2 2 2 0 Stage II sporulation protein R (spore_II_R) DHH PF01368.20 gi|134046456|ref|YP_001097941.1| - 9.6e-16 57.9 0.1 2.8e-15 56.4 0.1 1.8 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|134046456|ref|YP_001097941.1| - 1.2e-14 55.0 0.4 1.2e-14 55.0 0.4 2.0 2 1 0 2 2 2 1 DHHA1 domain DHNA PF04038.12 gi|134046457|ref|YP_001097942.1| - 6e-38 129.7 0.0 7.4e-38 129.4 0.0 1.1 1 0 0 1 1 1 1 Dihydroneopterin aldolase DUF2341 PF10102.9 gi|134046459|ref|YP_001097944.1| - 1.7e-14 54.2 3.8 1.7e-14 54.2 3.8 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) Class_IIIsignal PF04021.12 gi|134046464|ref|YP_001097949.1| - 2.7e-09 36.7 0.5 4.6e-09 36.0 0.5 1.4 1 0 0 1 1 1 1 Class III signal peptide DUF749 PF05370.11 gi|134046464|ref|YP_001097949.1| - 0.0021 18.1 0.0 0.0082 16.2 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF749) CRPV_capsid PF08762.10 gi|134046465|ref|YP_001097950.1| - 0.023 14.3 1.2 0.059 13.0 0.2 1.9 2 0 0 2 2 2 0 CRPV capsid protein like DUF515 PF04415.12 gi|134046466|ref|YP_001097951.1| - 3.8e-132 440.9 27.7 4e-99 332.0 19.4 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF515) GA PF01468.17 gi|134046466|ref|YP_001097951.1| - 0.0021 18.3 3.5 0.19 12.0 0.1 2.8 2 0 0 2 2 2 2 GA module DUF4763 PF15960.5 gi|134046466|ref|YP_001097951.1| - 0.027 13.8 0.8 0.041 13.2 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) LPD14 PF18827.1 gi|134046466|ref|YP_001097951.1| - 0.033 14.4 0.6 0.18 12.1 0.2 2.2 2 0 0 2 2 2 0 Large polyvalent protein-associated domain 14 DUF5349 PF17298.2 gi|134046466|ref|YP_001097951.1| - 0.062 13.1 1.0 0.075 12.8 0.1 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5349) Class_IIIsignal PF04021.12 gi|134046467|ref|YP_001097952.1| - 8.7e-09 35.1 1.9 1.4e-08 34.4 1.9 1.4 1 0 0 1 1 1 1 Class III signal peptide Arc_PepC PF06819.11 gi|134046468|ref|YP_001097953.1| - 1.9e-38 131.0 3.0 3e-38 130.4 3.0 1.3 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminal Domain Peptidase_A24 PF01478.18 gi|134046468|ref|YP_001097953.1| - 7e-07 29.6 12.9 7e-07 29.6 12.9 2.8 2 1 1 3 3 3 1 Type IV leader peptidase family zf-like PF04071.12 gi|134046469|ref|YP_001097954.1| - 1.1e-29 102.2 8.6 1.4e-29 101.8 8.6 1.2 1 0 0 1 1 1 1 Cysteine-rich small domain HD PF01966.22 gi|134046470|ref|YP_001097955.1| - 5.2e-14 52.5 2.1 9.7e-14 51.6 2.1 1.5 1 0 0 1 1 1 1 HD domain TraI_2 PF07514.11 gi|134046470|ref|YP_001097955.1| - 3.5e-05 22.9 0.0 5.8e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Putative helicase HD_2 PF12917.7 gi|134046470|ref|YP_001097955.1| - 0.094 12.5 0.1 0.43 10.3 0.1 1.9 2 0 0 2 2 2 0 HD containing hydrolase-like enzyme SBP_bac_11 PF13531.6 gi|134046471|ref|YP_001097956.1| - 2.1e-38 132.3 0.0 2.4e-38 132.2 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|134046471|ref|YP_001097956.1| - 8.7e-07 29.2 0.5 0.0018 18.3 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|134046471|ref|YP_001097956.1| - 3.4e-05 23.6 0.1 4.8e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like PF12727.7 gi|134046471|ref|YP_001097956.1| - 0.0014 17.8 0.0 0.0077 15.4 0.0 1.9 2 0 0 2 2 2 1 PBP superfamily domain BPD_transp_1 PF00528.22 gi|134046472|ref|YP_001097957.1| - 1.4e-16 60.8 13.2 1.4e-16 60.8 13.2 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UIM PF02809.20 gi|134046472|ref|YP_001097957.1| - 0.038 13.9 0.2 3.7 7.7 0.0 2.6 2 0 0 2 2 2 0 Ubiquitin interaction motif Viral_Beta_CD PF04530.12 gi|134046472|ref|YP_001097957.1| - 2.6 8.3 6.4 2 8.7 1.6 2.5 3 0 0 3 3 3 0 Viral Beta C/D like family MotB_plug PF13677.6 gi|134046472|ref|YP_001097957.1| - 9.6 5.9 7.1 11 5.6 5.6 2.0 2 0 0 2 2 2 0 Membrane MotB of proton-channel complex MotA/MotB DUF364 PF04016.12 gi|134046473|ref|YP_001097958.1| - 8.2e-10 38.4 0.0 1.6e-09 37.5 0.0 1.5 1 1 0 1 1 1 1 Putative heavy-metal chelation AAA_11 PF13086.6 gi|134046473|ref|YP_001097958.1| - 0.11 12.3 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|134046474|ref|YP_001097959.1| - 1.2e-27 97.1 0.0 2.2e-27 96.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|134046474|ref|YP_001097959.1| - 1.2e-05 25.3 5.2 0.0022 17.8 0.8 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|134046474|ref|YP_001097959.1| - 0.006 17.1 2.6 0.022 15.2 2.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|134046474|ref|YP_001097959.1| - 0.015 15.0 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain G-alpha PF00503.20 gi|134046474|ref|YP_001097959.1| - 0.028 13.6 0.9 0.071 12.3 0.9 1.8 1 1 0 1 1 1 0 G-protein alpha subunit AAA_15 PF13175.6 gi|134046474|ref|YP_001097959.1| - 0.033 13.9 11.8 0.11 12.2 11.7 2.1 1 1 0 1 1 1 0 AAA ATPase domain PEPCK_ATP PF01293.20 gi|134046474|ref|YP_001097959.1| - 0.049 12.3 0.0 0.087 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA PF00004.29 gi|134046474|ref|YP_001097959.1| - 0.06 13.8 0.5 0.21 12.0 0.5 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|134046474|ref|YP_001097959.1| - 0.063 12.9 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Arf PF00025.21 gi|134046474|ref|YP_001097959.1| - 0.077 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family T2SSE PF00437.20 gi|134046474|ref|YP_001097959.1| - 0.11 11.5 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|134046474|ref|YP_001097959.1| - 0.12 12.3 0.0 0.35 10.7 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|134046474|ref|YP_001097959.1| - 0.14 11.9 0.0 0.4 10.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|134046474|ref|YP_001097959.1| - 0.21 12.0 0.0 0.39 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain MoeA_N PF03453.17 gi|134046475|ref|YP_001097960.1| - 9.2e-35 119.7 0.0 1.3e-34 119.2 0.0 1.2 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|134046475|ref|YP_001097960.1| - 7.4e-25 87.3 0.1 1.1e-24 86.8 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|134046475|ref|YP_001097960.1| - 7e-07 29.3 0.0 2e-06 27.9 0.0 1.8 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Staphopain_pro PF14731.6 gi|134046475|ref|YP_001097960.1| - 0.064 13.3 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Staphopain proregion Molybdopterin PF00384.22 gi|134046476|ref|YP_001097961.1| - 4.2e-15 55.6 0.0 1.4e-14 53.9 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|134046476|ref|YP_001097961.1| - 0.00082 19.1 0.0 0.17 11.6 0.0 3.1 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain GXGXG PF01493.19 gi|134046477|ref|YP_001097962.1| - 5e-09 36.0 23.9 0.00021 21.0 3.7 3.4 1 1 1 2 2 2 2 GXGXG motif Molydop_binding PF01568.21 gi|134046477|ref|YP_001097962.1| - 2.1e-07 30.9 0.0 3.6e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain PQQ_3 PF13570.6 gi|134046477|ref|YP_001097962.1| - 0.79 10.3 3.9 15 6.3 0.5 2.9 2 1 0 2 2 2 0 PQQ-like domain Amidohydro_3 PF07969.11 gi|134046478|ref|YP_001097963.1| - 6.6e-79 266.6 0.0 7.9e-79 266.3 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|134046478|ref|YP_001097963.1| - 5e-09 35.9 0.3 4e-05 23.1 0.0 2.5 3 0 0 3 3 3 2 Amidohydrolase family Med26_C PF15693.5 gi|134046478|ref|YP_001097963.1| - 0.071 13.3 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Mediator complex subunit 26 C-terminal Dabb PF07876.12 gi|134046478|ref|YP_001097963.1| - 0.12 13.0 0.4 0.5 11.0 0.2 2.1 2 0 0 2 2 2 0 Stress responsive A/B Barrel Domain FmdE PF02663.14 gi|134046479|ref|YP_001097964.1| - 1.4e-20 73.7 0.0 1.8e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon SBP_bac_11 PF13531.6 gi|134046480|ref|YP_001097965.1| - 3.8e-56 190.4 0.0 4.4e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|134046480|ref|YP_001097965.1| - 5.3e-20 72.6 0.0 2.6e-18 67.0 0.0 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 gi|134046480|ref|YP_001097965.1| - 1.2e-05 25.1 3.2 8.5e-05 22.4 0.8 2.3 2 1 1 3 3 3 1 PBP superfamily domain SBP_bac_8 PF13416.6 gi|134046480|ref|YP_001097965.1| - 0.00012 22.0 0.1 0.015 15.2 0.1 2.1 1 1 1 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|134046480|ref|YP_001097965.1| - 0.00046 19.7 0.0 0.00082 18.9 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|134046480|ref|YP_001097965.1| - 0.00078 19.1 0.5 0.033 13.8 0.1 2.2 1 1 1 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.20 gi|134046480|ref|YP_001097965.1| - 0.0016 17.8 0.0 0.0066 15.8 0.0 1.9 2 1 0 2 2 2 1 LysR substrate binding domain OpuAC PF04069.12 gi|134046480|ref|YP_001097965.1| - 0.0023 17.5 0.5 0.0032 17.1 0.5 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system DUF4404 PF14357.6 gi|134046480|ref|YP_001097965.1| - 0.013 16.1 0.0 0.043 14.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) PBP_like PF12727.7 gi|134046480|ref|YP_001097965.1| - 0.019 14.1 0.1 0.039 13.1 0.1 1.7 1 1 0 1 1 1 0 PBP superfamily domain Sigma_reg_N PF13800.6 gi|134046480|ref|YP_001097965.1| - 0.1 12.9 1.5 4.2 7.7 0.1 2.6 2 1 0 2 2 2 0 Sigma factor regulator N-terminal BPD_transp_1 PF00528.22 gi|134046481|ref|YP_001097966.1| - 1.2e-23 83.9 13.7 1.2e-23 83.9 13.7 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ISK_Channel PF02060.15 gi|134046481|ref|YP_001097966.1| - 1.3 8.8 4.2 0.82 9.4 0.5 2.1 2 0 0 2 2 2 0 Slow voltage-gated potassium channel ABC_tran PF00005.27 gi|134046482|ref|YP_001097967.1| - 2.4e-31 109.1 0.0 4.5e-31 108.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|134046482|ref|YP_001097967.1| - 1e-06 28.8 2.1 0.011 15.5 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|134046482|ref|YP_001097967.1| - 6e-06 26.3 0.0 1.3e-05 25.2 0.0 1.6 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 gi|134046482|ref|YP_001097967.1| - 0.00027 20.5 1.1 0.0025 17.3 1.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|134046482|ref|YP_001097967.1| - 0.0032 17.2 0.2 0.0074 16.0 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain TniB PF05621.11 gi|134046482|ref|YP_001097967.1| - 0.012 15.0 1.0 0.03 13.7 0.1 2.0 2 0 0 2 2 2 0 Bacterial TniB protein AAA_16 PF13191.6 gi|134046482|ref|YP_001097967.1| - 0.016 15.6 0.0 0.029 14.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|134046482|ref|YP_001097967.1| - 0.021 15.1 0.8 0.092 13.0 0.8 2.0 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|134046482|ref|YP_001097967.1| - 0.08 12.6 0.0 0.32 10.6 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 gi|134046482|ref|YP_001097967.1| - 0.14 12.4 0.1 0.52 10.6 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF5616 PF18481.1 gi|134046483|ref|YP_001097968.1| - 5.1e-38 130.6 1.6 7.2e-38 130.1 1.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|134046483|ref|YP_001097968.1| - 5.8e-21 73.9 0.2 1.7e-20 72.4 0.2 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF434) Longin_2 PF18639.1 gi|134046483|ref|YP_001097968.1| - 0.16 11.8 2.7 0.11 12.4 1.0 1.6 2 0 0 2 2 2 0 Yeast longin domain HGTP_anticodon PF03129.20 gi|134046484|ref|YP_001097969.1| - 2e-21 75.9 0.0 5.9e-21 74.4 0.0 1.9 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|134046484|ref|YP_001097969.1| - 8.6e-10 38.9 0.5 5.8e-09 36.2 0.5 2.2 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Zn-ribbon_8 PF09723.10 gi|134046484|ref|YP_001097969.1| - 0.0027 17.8 1.3 0.025 14.7 0.1 2.8 3 0 0 3 3 3 1 Zinc ribbon domain Rad50_zn_hook PF04423.14 gi|134046484|ref|YP_001097969.1| - 0.087 12.7 2.3 0.35 10.7 0.1 2.7 2 0 0 2 2 2 0 Rad50 zinc hook motif CpXC PF14353.6 gi|134046484|ref|YP_001097969.1| - 0.37 10.9 2.9 0.23 11.5 0.5 1.8 2 0 0 2 2 2 0 CpXC protein zf-C2HC_2 PF13913.6 gi|134046484|ref|YP_001097969.1| - 0.66 10.0 4.8 5.8 6.9 0.0 3.0 3 0 0 3 3 3 0 zinc-finger of a C2HC-type zf-C2H2_4 PF13894.6 gi|134046484|ref|YP_001097969.1| - 2.1 9.4 3.4 19 6.4 0.1 3.5 3 0 0 3 3 3 0 C2H2-type zinc finger CitG PF01874.16 gi|134046485|ref|YP_001097970.1| - 2.2e-59 201.4 0.0 2.5e-59 201.2 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase CDC37_C PF08564.10 gi|134046485|ref|YP_001097970.1| - 0.049 13.7 1.3 4.4 7.5 0.1 2.4 2 1 0 2 2 2 0 Cdc37 C terminal domain HTH_43 PF09904.9 gi|134046485|ref|YP_001097970.1| - 0.15 12.0 0.1 1.3 9.1 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix Ham1p_like PF01725.16 gi|134046486|ref|YP_001097971.1| - 2.9e-46 157.7 0.1 3.3e-46 157.6 0.1 1.0 1 0 0 1 1 1 1 Ham1 family DUF4720 PF15846.5 gi|134046486|ref|YP_001097971.1| - 0.078 12.8 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4720) HTH_45 PF14947.6 gi|134046487|ref|YP_001097972.1| - 4.2e-06 26.7 0.5 4.2e-06 26.7 0.5 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DUF3741 PF12552.8 gi|134046488|ref|YP_001097973.1| - 0.015 15.2 0.5 0.038 13.9 0.5 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3741) DUF2516 PF10724.9 gi|134046488|ref|YP_001097973.1| - 0.47 10.8 3.1 0.83 10.0 3.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2516) DHH PF01368.20 gi|134046489|ref|YP_001097974.1| - 1.6e-25 89.2 0.0 3.2e-25 88.3 0.0 1.5 1 0 0 1 1 1 1 DHH family DHHA2 PF02833.14 gi|134046489|ref|YP_001097974.1| - 2.1e-22 79.8 0.2 6.2e-22 78.3 0.3 1.7 2 0 0 2 2 2 1 DHHA2 domain SSF PF00474.17 gi|134046490|ref|YP_001097975.1| - 2.6e-55 187.9 27.8 3.7e-55 187.5 27.8 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family SSF PF00474.17 gi|134046491|ref|YP_001097976.1| - 2.6e-101 339.5 30.8 2.6e-101 339.5 30.8 1.4 2 0 0 2 2 2 1 Sodium:solute symporter family DUF5379 PF17350.2 gi|134046493|ref|YP_001097978.1| - 2.8e-43 146.1 11.3 3.1e-43 146.0 11.3 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5379) Sdh_cyt PF01127.22 gi|134046493|ref|YP_001097978.1| - 0.072 13.1 6.0 1.2 9.2 6.0 2.0 1 1 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Aminotran_3 PF00202.21 gi|134046494|ref|YP_001097979.1| - 7.1e-73 245.6 0.0 9.3e-73 245.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Ligase_CoA PF00549.19 gi|134046494|ref|YP_001097979.1| - 0.076 12.8 0.1 0.89 9.4 0.1 2.2 1 1 0 1 1 1 0 CoA-ligase Fe-ADH_2 PF13685.6 gi|134046495|ref|YP_001097980.1| - 8.1e-54 183.0 0.3 1.1e-52 179.3 0.3 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|134046495|ref|YP_001097980.1| - 2.1e-14 53.2 0.2 1e-13 50.9 0.2 2.2 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|134046495|ref|YP_001097980.1| - 0.00018 20.8 0.0 0.0019 17.4 0.0 2.4 2 1 0 2 2 2 1 3-dehydroquinate synthase NTP_transf_6 PF06042.11 gi|134046495|ref|YP_001097980.1| - 0.038 13.8 0.6 1.5 8.6 0.3 2.2 2 0 0 2 2 2 0 Nucleotidyltransferase UBA PF00627.31 gi|134046495|ref|YP_001097980.1| - 0.046 13.6 0.0 0.09 12.7 0.0 1.5 1 0 0 1 1 1 0 UBA/TS-N domain Baculo_LEF-11 PF06385.12 gi|134046495|ref|YP_001097980.1| - 0.067 13.7 0.3 9.8 6.8 0.0 2.5 2 0 0 2 2 2 0 Baculovirus LEF-11 protein QueC PF06508.13 gi|134046496|ref|YP_001097981.1| - 1.7e-64 217.2 0.0 1.9e-64 217.0 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|134046496|ref|YP_001097981.1| - 4e-07 30.0 0.0 6.2e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|134046496|ref|YP_001097981.1| - 1.5e-05 23.9 0.1 5.2e-05 22.2 0.0 1.8 2 0 0 2 2 2 1 tRNA methyl transferase ThiI PF02568.14 gi|134046496|ref|YP_001097981.1| - 1.8e-05 24.4 0.1 0.00039 20.1 0.1 2.4 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.17 gi|134046496|ref|YP_001097981.1| - 0.00051 19.2 0.3 0.0029 16.8 0.0 1.9 2 0 0 2 2 2 1 NAD synthase NRDD PF13597.6 gi|134046497|ref|YP_001097982.1| - 2.4e-169 564.7 0.3 3.4e-169 564.3 0.3 1.2 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.16 gi|134046497|ref|YP_001097982.1| - 2.4e-18 66.5 5.0 1.8e-08 34.8 0.1 3.0 3 0 0 3 3 3 2 ATP cone domain DNA_PPF PF02916.15 gi|134046497|ref|YP_001097982.1| - 0.023 15.1 0.1 0.083 13.3 0.1 1.9 1 0 0 1 1 1 0 DNA polymerase processivity factor Rep_fac_C PF08542.11 gi|134046497|ref|YP_001097982.1| - 0.034 14.5 0.4 0.38 11.2 0.1 2.6 2 1 0 2 2 2 0 Replication factor C C-terminal domain YtzH PF14165.6 gi|134046497|ref|YP_001097982.1| - 0.14 12.6 0.4 0.5 10.8 0.1 2.1 2 0 0 2 2 2 0 YtzH-like protein DUF2701 PF10857.8 gi|134046497|ref|YP_001097982.1| - 0.16 12.0 2.4 24 5.0 0.1 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2701) DUF2963 PF11178.8 gi|134046497|ref|YP_001097982.1| - 0.46 10.2 6.7 8.1 6.2 2.9 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2963) Inhibitor_G39P PF11417.8 gi|134046497|ref|YP_001097982.1| - 0.62 10.6 2.2 2.7 8.6 0.8 2.7 2 0 0 2 2 2 0 Loader and inhibitor of phage G40P TRM PF02005.16 gi|134046498|ref|YP_001097983.1| - 7.6e-105 351.2 0.0 8.9e-105 350.9 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.6 gi|134046498|ref|YP_001097983.1| - 1.6e-05 24.8 0.1 0.00041 20.2 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 gi|134046498|ref|YP_001097983.1| - 0.00035 20.4 0.0 0.00057 19.7 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|134046498|ref|YP_001097983.1| - 0.0021 17.6 0.1 0.014 14.9 0.0 2.0 1 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|134046498|ref|YP_001097983.1| - 0.039 14.7 0.0 0.34 11.7 0.0 2.4 2 1 1 3 3 3 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|134046498|ref|YP_001097983.1| - 0.082 12.2 0.1 0.46 9.8 0.0 2.0 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family ABC_tran PF00005.27 gi|134046499|ref|YP_001097984.1| - 2.5e-38 131.7 0.1 3.3e-38 131.3 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|134046499|ref|YP_001097984.1| - 3.8e-13 49.9 0.0 1.1e-05 25.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|134046499|ref|YP_001097984.1| - 6.1e-09 35.6 0.5 3.4e-07 29.9 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|134046499|ref|YP_001097984.1| - 3.6e-05 23.6 0.0 0.00056 19.7 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|134046499|ref|YP_001097984.1| - 6.1e-05 22.7 0.0 0.00012 21.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|134046499|ref|YP_001097984.1| - 8.7e-05 23.1 0.4 0.00031 21.3 0.5 1.9 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|134046499|ref|YP_001097984.1| - 0.00017 20.5 0.7 0.08 11.7 0.2 2.5 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|134046499|ref|YP_001097984.1| - 0.00017 22.0 0.2 0.00035 21.0 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|134046499|ref|YP_001097984.1| - 0.00018 21.6 0.1 0.00043 20.3 0.0 1.9 1 1 1 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|134046499|ref|YP_001097984.1| - 0.00021 21.2 0.1 0.0004 20.3 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|134046499|ref|YP_001097984.1| - 0.00024 21.4 0.4 0.00091 19.5 0.4 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|134046499|ref|YP_001097984.1| - 0.00067 19.4 0.1 0.0015 18.3 0.0 1.6 2 0 0 2 2 2 1 IstB-like ATP binding protein Rad17 PF03215.15 gi|134046499|ref|YP_001097984.1| - 0.00084 19.3 0.3 0.0013 18.7 0.2 1.4 1 1 0 1 1 1 1 Rad17 P-loop domain ATPase_2 PF01637.18 gi|134046499|ref|YP_001097984.1| - 0.001 19.1 0.3 0.0024 17.8 0.3 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|134046499|ref|YP_001097984.1| - 0.0041 17.3 0.1 0.014 15.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|134046499|ref|YP_001097984.1| - 0.01 15.9 0.1 0.015 15.4 0.1 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|134046499|ref|YP_001097984.1| - 0.01 15.0 0.1 0.025 13.8 0.1 1.7 1 1 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.6 gi|134046499|ref|YP_001097984.1| - 0.012 15.4 0.2 0.02 14.7 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|134046499|ref|YP_001097984.1| - 0.017 15.7 0.0 0.03 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|134046499|ref|YP_001097984.1| - 0.022 14.0 0.0 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_13 PF13166.6 gi|134046499|ref|YP_001097984.1| - 0.024 13.3 0.0 4.2 5.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|134046499|ref|YP_001097984.1| - 0.027 14.1 0.0 0.3 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain Septin PF00735.18 gi|134046499|ref|YP_001097984.1| - 0.032 13.5 0.0 0.047 13.0 0.0 1.2 1 0 0 1 1 1 0 Septin VirE PF05272.11 gi|134046499|ref|YP_001097984.1| - 0.036 13.8 0.0 0.051 13.3 0.0 1.3 1 0 0 1 1 1 0 Virulence-associated protein E AAA_24 PF13479.6 gi|134046499|ref|YP_001097984.1| - 0.037 13.8 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|134046499|ref|YP_001097984.1| - 0.042 13.8 0.1 0.08 12.9 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|134046499|ref|YP_001097984.1| - 0.043 13.4 0.7 0.13 11.8 0.1 2.0 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|134046499|ref|YP_001097984.1| - 0.047 13.1 0.0 0.1 12.0 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Pox_ATPase-GT PF10640.9 gi|134046499|ref|YP_001097984.1| - 0.052 12.4 0.2 0.069 12.0 0.2 1.2 1 0 0 1 1 1 0 mRNA capping enzyme N-terminal, ATPase and guanylyltransferase cobW PF02492.19 gi|134046499|ref|YP_001097984.1| - 0.056 13.0 0.2 0.12 12.0 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|134046499|ref|YP_001097984.1| - 0.057 12.5 0.1 0.11 11.5 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|134046499|ref|YP_001097984.1| - 0.061 13.3 0.3 0.6 10.1 0.3 2.5 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA12 PF10443.9 gi|134046499|ref|YP_001097984.1| - 0.062 12.0 0.0 0.091 11.5 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein Roc PF08477.13 gi|134046499|ref|YP_001097984.1| - 0.07 13.4 0.1 0.21 11.8 0.1 1.8 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA PF00004.29 gi|134046499|ref|YP_001097984.1| - 0.073 13.5 0.3 0.23 11.9 0.3 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|134046499|ref|YP_001097984.1| - 0.095 12.9 0.4 1.2 9.5 0.4 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.6 gi|134046499|ref|YP_001097984.1| - 0.19 12.1 0.4 0.34 11.3 0.4 1.6 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|134046500|ref|YP_001097985.1| - 4.2e-21 75.5 16.2 5.2e-21 75.2 16.2 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.20 gi|134046501|ref|YP_001097986.1| - 5.4e-67 225.5 1.3 6.2e-67 225.3 1.3 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|134046501|ref|YP_001097986.1| - 8.5e-07 29.2 0.1 1.8e-05 24.9 0.1 2.3 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|134046501|ref|YP_001097986.1| - 0.00034 20.6 0.5 0.00084 19.3 0.5 1.5 1 1 1 2 2 2 1 NMT1/THI5 like DUF5092 PF17010.5 gi|134046501|ref|YP_001097986.1| - 0.057 13.3 0.1 0.098 12.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5092) TPR_1 PF00515.28 gi|134046502|ref|YP_001097987.1| - 5.9e-33 111.3 15.6 2.4e-06 27.1 1.8 6.1 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|134046502|ref|YP_001097987.1| - 6.1e-31 104.0 7.4 2.5e-06 27.2 2.9 5.6 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|134046502|ref|YP_001097987.1| - 2.7e-26 89.5 12.6 6.3e-05 22.9 0.5 6.2 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|134046502|ref|YP_001097987.1| - 2.9e-22 78.1 6.9 3e-06 26.8 2.5 5.1 4 2 1 5 5 5 3 TPR repeat TPR_14 PF13428.6 gi|134046502|ref|YP_001097987.1| - 2.3e-16 59.1 0.0 0.01 16.6 0.0 5.3 3 1 2 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|134046502|ref|YP_001097987.1| - 5.3e-16 59.0 0.0 3.2e-07 30.9 0.0 3.9 1 1 2 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|134046502|ref|YP_001097987.1| - 3.6e-14 53.0 0.0 6.1e-08 33.1 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|134046502|ref|YP_001097987.1| - 4e-13 48.7 12.3 0.014 15.8 0.0 6.8 7 0 0 7 7 6 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|134046502|ref|YP_001097987.1| - 1.5e-12 47.5 3.9 1.9e-06 28.0 0.2 3.1 2 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|134046502|ref|YP_001097987.1| - 1.1e-11 43.8 0.4 0.012 15.6 0.2 5.4 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|134046502|ref|YP_001097987.1| - 1.4e-11 44.4 0.0 0.083 13.1 0.0 4.1 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|134046502|ref|YP_001097987.1| - 2.7e-10 40.4 2.2 0.21 11.9 0.9 5.2 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|134046502|ref|YP_001097987.1| - 1.2e-08 35.0 0.9 0.59 10.9 0.2 5.9 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|134046502|ref|YP_001097987.1| - 4.4e-05 23.2 0.9 0.26 11.2 0.2 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|134046502|ref|YP_001097987.1| - 0.00017 21.6 4.4 3.1 7.9 0.0 4.1 4 0 0 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat DUF357 PF04010.13 gi|134046502|ref|YP_001097987.1| - 0.00036 20.6 3.6 0.0086 16.1 0.5 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF357) NARP1 PF12569.8 gi|134046502|ref|YP_001097987.1| - 0.00046 19.2 0.3 0.28 10.0 0.0 2.9 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 PPR PF01535.20 gi|134046502|ref|YP_001097987.1| - 0.0029 17.8 1.6 13 6.3 0.1 5.0 5 1 0 5 5 5 0 PPR repeat RPN7 PF10602.9 gi|134046502|ref|YP_001097987.1| - 0.0099 15.6 3.0 0.2 11.3 0.4 3.1 3 1 1 4 4 4 1 26S proteasome subunit RPN7 TPR_15 PF13429.6 gi|134046502|ref|YP_001097987.1| - 0.012 14.8 0.0 6.6 5.8 0.0 2.9 2 1 1 4 4 4 0 Tetratricopeptide repeat TPR_3 PF07720.12 gi|134046502|ref|YP_001097987.1| - 0.015 15.3 9.0 1.7 8.7 0.2 4.0 2 1 2 4 4 4 0 Tetratricopeptide repeat DUF5113 PF17140.4 gi|134046502|ref|YP_001097987.1| - 0.019 14.7 4.8 1.9 8.3 1.1 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF5113) SRP_TPR_like PF17004.5 gi|134046502|ref|YP_001097987.1| - 0.043 13.8 2.7 4 7.5 0.4 2.6 1 1 1 2 2 2 0 Putative TPR-like repeat DUF3808 PF10300.9 gi|134046502|ref|YP_001097987.1| - 0.08 11.7 0.1 0.2 10.3 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3808) YfiO PF13525.6 gi|134046502|ref|YP_001097987.1| - 0.18 11.5 4.1 0.65 9.7 0.1 2.4 2 1 0 3 3 2 0 Outer membrane lipoprotein MIT PF04212.18 gi|134046502|ref|YP_001097987.1| - 0.38 10.9 12.7 2.7 8.1 2.7 4.8 4 2 1 5 5 5 0 MIT (microtubule interacting and transport) domain NRBF2_MIT PF17169.4 gi|134046502|ref|YP_001097987.1| - 0.45 10.8 3.3 13 6.0 0.1 3.7 3 2 2 5 5 4 0 MIT domain of nuclear receptor-binding factor 2 PPR_2 PF13041.6 gi|134046502|ref|YP_001097987.1| - 0.52 10.6 2.5 2.6 8.3 0.1 3.4 4 1 0 4 4 2 0 PPR repeat family LMWPc PF01451.21 gi|134046503|ref|YP_001097988.1| - 5.1e-14 52.9 0.0 8.6e-14 52.1 0.0 1.4 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase ArenaCapSnatch PF17296.2 gi|134046503|ref|YP_001097988.1| - 0.017 14.5 0.1 0.023 14.2 0.1 1.2 1 0 0 1 1 1 0 Arenavirus cap snatching domain Ssu72 PF04722.13 gi|134046503|ref|YP_001097988.1| - 0.061 12.9 0.4 0.89 9.1 0.1 2.1 1 1 1 2 2 2 0 Ssu72-like protein DUF4777 PF16007.5 gi|134046503|ref|YP_001097988.1| - 0.11 12.8 0.5 0.82 10.0 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4777) DUF2149 PF09919.9 gi|134046504|ref|YP_001097989.1| - 2.8e-22 78.7 2.0 3.6e-22 78.4 2.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) MotA_ExbB PF01618.16 gi|134046505|ref|YP_001097990.1| - 7.9e-12 45.0 0.1 1.1e-11 44.5 0.1 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family Spore_III_AB PF09548.10 gi|134046505|ref|YP_001097990.1| - 0.00027 21.1 0.0 0.00056 20.1 0.0 1.5 1 0 0 1 1 1 1 Stage III sporulation protein AB (spore_III_AB) DUF2162 PF09930.9 gi|134046506|ref|YP_001097991.1| - 1.5e-64 217.5 27.2 1.7e-64 217.3 27.2 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) CobN-Mg_chel PF02514.16 gi|134046507|ref|YP_001097992.1| - 0 1078.9 1.1 0 1078.4 1.1 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CarboxypepD_reg PF13620.6 gi|134046507|ref|YP_001097992.1| - 3.2e-44 149.1 33.3 8.2e-09 35.6 1.0 7.6 7 0 0 7 7 7 6 Carboxypeptidase regulatory-like domain SdrD_B PF17210.3 gi|134046507|ref|YP_001097992.1| - 2.6e-21 75.9 30.0 0.00095 19.4 0.3 7.7 7 0 0 7 7 6 6 SdrD B-like domain CarbopepD_reg_2 PF13715.6 gi|134046507|ref|YP_001097992.1| - 7.5e-21 73.9 32.5 0.06 13.3 0.0 10.5 7 3 3 10 10 10 6 CarboxypepD_reg-like domain DUF2012 PF09430.10 gi|134046507|ref|YP_001097992.1| - 3.6e-19 69.1 2.4 0.086 13.0 0.0 6.6 6 0 0 6 6 6 6 Protein of unknown function (DUF2012) SpaA PF17802.1 gi|134046507|ref|YP_001097992.1| - 1.9e-16 60.1 35.9 0.012 15.9 0.5 7.2 7 0 0 7 7 6 6 Prealbumin-like fold domain fn3_3 PF14686.6 gi|134046507|ref|YP_001097992.1| - 1.8e-15 56.4 24.2 0.1 12.4 0.3 7.1 7 0 0 7 7 7 6 Polysaccharide lyase family 4, domain II Big_3_3 PF13750.6 gi|134046507|ref|YP_001097992.1| - 7e-15 55.0 8.8 0.97 9.1 0.0 6.7 6 0 0 6 6 6 6 Bacterial Ig-like domain (group 3) DUF1416 PF07210.12 gi|134046507|ref|YP_001097992.1| - 8.9e-10 38.3 6.5 0.091 12.7 0.1 4.8 6 0 0 6 6 5 3 Protein of unknown function (DUF1416) Y_Y_Y PF07495.13 gi|134046507|ref|YP_001097992.1| - 4.4e-06 26.6 12.0 25 4.9 0.0 6.7 6 0 0 6 6 6 0 Y_Y_Y domain Big_6 PF17936.1 gi|134046507|ref|YP_001097992.1| - 1.2e-05 25.4 33.5 0.013 15.8 0.8 5.8 6 2 0 6 6 5 3 Bacterial Ig domain Flavodoxin_4 PF12682.7 gi|134046507|ref|YP_001097992.1| - 0.00013 21.7 0.3 1.2e+02 2.4 0.0 6.0 6 0 0 6 6 6 0 Flavodoxin DUF5612 PF18462.1 gi|134046507|ref|YP_001097992.1| - 0.00075 19.3 9.5 77 3.1 0.0 6.4 6 0 0 6 6 6 0 Domain of unknown function (DUF5612) TTR-52 PF01060.23 gi|134046507|ref|YP_001097992.1| - 0.0015 19.2 11.3 1.1e+02 3.6 0.1 6.7 6 0 0 6 6 6 0 Transthyretin-like family AP4E_app_platf PF14807.6 gi|134046507|ref|YP_001097992.1| - 0.0018 18.6 0.7 3.9e+02 1.5 0.0 6.1 6 0 0 6 6 6 0 Adaptin AP4 complex epsilon appendage platform bMG3 PF11974.8 gi|134046507|ref|YP_001097992.1| - 0.0021 18.1 13.9 2.9 8.0 0.1 5.7 8 0 0 8 8 3 3 Bacterial alpha-2-macroglobulin MG3 domain DUF4124 PF13511.6 gi|134046507|ref|YP_001097992.1| - 0.12 12.8 7.9 3.2e+02 1.8 0.0 6.1 6 0 0 6 6 6 0 Domain of unknown function (DUF4124) COMM_domain PF07258.14 gi|134046507|ref|YP_001097992.1| - 0.2 11.8 2.5 0.97 9.6 2.5 2.3 1 0 0 1 1 1 0 COMM domain NUP214 PF16755.5 gi|134046508|ref|YP_001097993.1| - 0.041 13.1 0.1 0.042 13.1 0.1 1.1 1 0 0 1 1 1 0 Nucleoporin or Nuclear pore complex subunit NUP214=Nup159 DUF1890 PF09001.11 gi|134046508|ref|YP_001097993.1| - 0.081 13.3 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1890) Elong-fact-P_C PF09285.11 gi|134046508|ref|YP_001097993.1| - 0.12 12.2 0.2 0.18 11.5 0.2 1.3 1 0 0 1 1 1 0 Elongation factor P, C-terminal PemK_toxin PF02452.17 gi|134046509|ref|YP_001097994.1| - 1.1e-23 83.8 0.2 1.1e-23 83.7 0.2 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system Phage_integrase PF00589.22 gi|134046510|ref|YP_001097995.1| - 1.8e-29 102.7 0.8 5e-29 101.3 0.1 1.9 2 1 1 3 3 3 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|134046510|ref|YP_001097995.1| - 3.6e-10 40.2 0.7 8.9e-10 38.9 0.7 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|134046510|ref|YP_001097995.1| - 1.3e-05 25.5 5.3 0.00022 21.5 4.5 2.9 2 1 0 2 2 2 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|134046510|ref|YP_001097995.1| - 0.046 14.0 0.4 1.9 8.9 0.5 2.6 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain DUF4357 PF14267.6 gi|134046511|ref|YP_001097996.1| - 3.3e-18 65.4 0.0 6e-18 64.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4357) RAMA PF18755.1 gi|134046511|ref|YP_001097996.1| - 0.0011 19.4 0.0 0.0021 18.4 0.0 1.5 1 1 0 1 1 1 1 Restriction Enzyme Adenine Methylase Associated GIY-YIG PF01541.24 gi|134046511|ref|YP_001097996.1| - 0.0014 18.8 0.1 0.003 17.8 0.1 1.6 1 1 0 1 1 1 1 GIY-YIG catalytic domain AbiJ_NTD3 PF18860.1 gi|134046511|ref|YP_001097996.1| - 0.099 12.2 0.0 0.25 10.8 0.0 1.6 1 1 0 1 1 1 0 AbiJ N-terminal domain 3 HTH_45 PF14947.6 gi|134046512|ref|YP_001097997.1| - 7.6e-07 29.0 0.5 9.7e-07 28.7 0.5 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.17 gi|134046512|ref|YP_001097997.1| - 1.6e-06 27.8 0.1 1.8e-06 27.7 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TFIIE_alpha PF02002.17 gi|134046512|ref|YP_001097997.1| - 0.00014 21.6 1.4 0.00016 21.5 1.4 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_DeoR PF08220.12 gi|134046512|ref|YP_001097997.1| - 0.00025 20.7 0.8 0.0003 20.5 0.1 1.5 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|134046512|ref|YP_001097997.1| - 0.00025 20.8 0.1 0.00037 20.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF4364 PF14277.6 gi|134046512|ref|YP_001097997.1| - 0.00033 20.4 0.1 0.00045 20.0 0.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) MarR PF01047.22 gi|134046512|ref|YP_001097997.1| - 0.00035 20.4 0.1 0.00056 19.8 0.1 1.4 1 0 0 1 1 1 1 MarR family RTP PF02334.16 gi|134046512|ref|YP_001097997.1| - 0.0004 21.0 0.7 0.00044 20.9 0.7 1.1 1 0 0 1 1 1 1 Replication terminator protein HTH_27 PF13463.6 gi|134046512|ref|YP_001097997.1| - 0.00046 20.6 0.1 0.00065 20.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|134046512|ref|YP_001097997.1| - 0.00069 19.7 0.0 0.00072 19.7 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation TrmB PF01978.19 gi|134046512|ref|YP_001097997.1| - 0.001 18.9 0.1 0.0014 18.4 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|134046512|ref|YP_001097997.1| - 0.0011 19.1 0.1 0.0014 18.8 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|134046512|ref|YP_001097997.1| - 0.0034 17.3 0.1 0.0071 16.3 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_IclR PF09339.10 gi|134046512|ref|YP_001097997.1| - 0.0035 17.1 0.0 0.011 15.6 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|134046512|ref|YP_001097997.1| - 0.0085 16.2 0.5 0.39 10.9 0.5 2.2 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) KicB PF03882.14 gi|134046512|ref|YP_001097997.1| - 0.0099 16.1 0.1 0.012 15.8 0.1 1.1 1 0 0 1 1 1 1 MukF winged-helix domain Mrr_N PF14338.6 gi|134046512|ref|YP_001097997.1| - 0.015 15.5 0.1 4.2 7.6 0.0 2.1 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_24 PF13412.6 gi|134046512|ref|YP_001097997.1| - 0.016 14.7 0.1 0.025 14.1 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GMP_synt_C PF00958.22 gi|134046512|ref|YP_001097997.1| - 0.049 13.7 0.1 0.065 13.3 0.1 1.2 1 0 0 1 1 1 0 GMP synthase C terminal domain pXO2-72 PF17443.2 gi|134046512|ref|YP_001097997.1| - 0.071 13.4 0.8 0.6 10.4 0.1 2.2 1 1 1 2 2 2 0 Uncharacterized protein pXO2-72 DUF1495 PF07381.11 gi|134046512|ref|YP_001097997.1| - 0.099 12.5 0.5 1.3 8.9 0.5 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) LppC PF04348.13 gi|134046512|ref|YP_001097997.1| - 0.12 11.2 0.1 0.12 11.1 0.1 1.0 1 0 0 1 1 1 0 LppC putative lipoprotein DUF1942 PF09167.11 gi|134046512|ref|YP_001097997.1| - 0.16 11.9 0.0 0.74 9.8 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1942) Phage_integrase PF00589.22 gi|134046513|ref|YP_001097998.1| - 3.9e-12 46.3 0.2 1.5e-11 44.4 0.0 2.1 2 1 0 2 2 2 1 Phage integrase family Integrase_1 PF12835.7 gi|134046513|ref|YP_001097998.1| - 2.9e-06 27.4 0.0 6.7e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 Integrase Phage_int_SAM_6 PF18644.1 gi|134046513|ref|YP_001097998.1| - 0.02 14.9 0.2 0.06 13.4 0.2 1.8 1 0 0 1 1 1 0 Phage integrase SAM-like domain Diphthamide_syn PF01866.17 gi|134046514|ref|YP_001097999.1| - 2e-53 181.8 2.0 2.1e-51 175.2 2.0 2.0 1 1 0 1 1 1 1 Putative diphthamide synthesis protein Focadhesin PF11229.8 gi|134046514|ref|YP_001097999.1| - 0.0027 16.0 0.2 0.019 13.3 0.1 1.9 2 0 0 2 2 2 1 Focadhesin Thioredoxin_3 PF13192.6 gi|134046514|ref|YP_001097999.1| - 0.079 13.0 0.2 0.36 10.9 0.1 2.2 2 0 0 2 2 2 0 Thioredoxin domain ThiC_Rad_SAM PF01964.18 gi|134046515|ref|YP_001098000.1| - 2.7e-188 626.0 0.6 3e-188 625.8 0.6 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Sua5_yciO_yrdC PF01300.18 gi|134046516|ref|YP_001098001.1| - 2e-45 154.5 0.2 2.3e-45 154.3 0.2 1.0 1 0 0 1 1 1 1 Telomere recombination PNP_UDP_1 PF01048.20 gi|134046517|ref|YP_001098002.1| - 1.8e-41 141.9 0.0 2.2e-41 141.6 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily CTP-dep_RFKase PF01982.16 gi|134046518|ref|YP_001098003.1| - 6.3e-33 113.4 0.0 7.2e-33 113.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 DHBP_synthase PF00926.19 gi|134046519|ref|YP_001098004.1| - 4.9e-62 208.9 0.0 5.7e-62 208.7 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase PhoU_div PF01865.16 gi|134046519|ref|YP_001098004.1| - 0.022 14.1 0.1 0.05 12.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF47 PEP-utilizers PF00391.23 gi|134046519|ref|YP_001098004.1| - 0.085 12.6 0.2 12 5.7 0.0 2.8 3 0 0 3 3 3 0 PEP-utilising enzyme, mobile domain P63C PF10546.9 gi|134046520|ref|YP_001098005.1| - 0.023 15.2 1.7 0.027 15.1 1.7 1.1 1 0 0 1 1 1 0 P63C domain DMRL_synthase PF00885.19 gi|134046521|ref|YP_001098006.1| - 8.2e-15 54.9 0.2 1e-14 54.6 0.2 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase AIRS_C PF02769.22 gi|134046522|ref|YP_001098007.1| - 3.8e-42 144.1 0.6 2e-24 86.5 0.1 2.2 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|134046522|ref|YP_001098007.1| - 1.6e-15 57.3 0.0 5.7e-15 55.6 0.0 2.0 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain AIRS PF00586.24 gi|134046522|ref|YP_001098007.1| - 4.2e-14 53.0 0.0 1.9e-07 31.6 0.0 2.6 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain PurS PF02700.14 gi|134046522|ref|YP_001098007.1| - 0.00011 22.4 1.4 0.49 10.6 0.1 4.1 3 1 0 3 3 3 2 Phosphoribosylformylglycinamidine (FGAM) synthase Propep_M14 PF02244.16 gi|134046522|ref|YP_001098007.1| - 0.11 12.9 2.1 11 6.6 0.0 3.6 4 0 0 4 4 4 0 Carboxypeptidase activation peptide GATase_5 PF13507.6 gi|134046523|ref|YP_001098008.1| - 1.7e-84 283.0 0.0 1.9e-84 282.8 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|134046523|ref|YP_001098008.1| - 1.6e-05 24.8 0.0 4.1e-05 23.4 0.0 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|134046523|ref|YP_001098008.1| - 2.7e-05 23.9 0.0 4.7e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|134046523|ref|YP_001098008.1| - 0.0014 18.4 0.0 0.011 15.5 0.0 2.3 1 1 0 1 1 1 1 DJ-1/PfpI family zinc_ribbon_5 PF13719.6 gi|134046524|ref|YP_001098009.1| - 1.6e-06 27.8 3.0 0.2 11.5 0.1 3.6 3 1 0 3 3 3 3 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|134046524|ref|YP_001098009.1| - 5.5e-06 26.2 7.6 0.26 11.2 0.0 4.1 3 1 0 3 3 3 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|134046524|ref|YP_001098009.1| - 0.00029 20.7 6.2 0.079 12.9 0.8 2.2 2 0 0 2 2 2 2 Putative transposase DNA-binding domain TackOD1 PF18551.1 gi|134046524|ref|YP_001098009.1| - 0.0019 17.9 2.6 0.15 11.7 0.3 2.3 2 0 0 2 2 2 2 Thaumarchaeal output domain 1 C1_1 PF00130.22 gi|134046524|ref|YP_001098009.1| - 0.0029 17.4 4.8 0.43 10.5 0.6 2.4 2 0 0 2 2 2 2 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-MYND PF01753.18 gi|134046524|ref|YP_001098009.1| - 0.0036 17.4 7.6 0.035 14.2 0.3 2.6 2 1 1 3 3 3 2 MYND finger zf-ribbon_3 PF13248.6 gi|134046524|ref|YP_001098009.1| - 0.0083 15.5 11.7 4.5 6.8 0.1 4.2 4 0 0 4 4 4 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|134046524|ref|YP_001098009.1| - 0.015 15.4 8.7 0.18 12.0 0.1 3.1 2 1 1 3 3 3 0 Zinc ribbon domain eIF-5_eIF-2B PF01873.17 gi|134046524|ref|YP_001098009.1| - 0.017 15.0 7.1 0.23 11.4 0.5 2.3 1 1 0 2 2 2 0 Domain found in IF2B/IF5 DUF1451 PF07295.11 gi|134046524|ref|YP_001098009.1| - 0.021 14.8 2.2 1.3 9.0 0.1 2.2 2 0 0 2 2 2 0 Zinc-ribbon containing domain Zn_Tnp_IS1595 PF12760.7 gi|134046524|ref|YP_001098009.1| - 0.044 13.8 10.8 1.5 8.9 0.6 3.7 3 1 0 3 3 3 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|134046524|ref|YP_001098009.1| - 0.064 13.6 8.3 3.1 8.2 0.8 3.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Vps39_2 PF10367.9 gi|134046524|ref|YP_001098009.1| - 0.11 13.0 3.1 1 9.8 0.6 2.1 1 1 1 2 2 2 0 Vacuolar sorting protein 39 domain 2 zf-C2HE PF16278.5 gi|134046524|ref|YP_001098009.1| - 0.17 12.3 0.1 0.17 12.3 0.1 2.8 3 1 1 4 4 3 0 C2HE / C2H2 / C2HC zinc-binding finger Ribosomal_L32p PF01783.23 gi|134046524|ref|YP_001098009.1| - 0.22 11.8 7.1 8.3 6.8 0.0 3.8 3 1 1 4 4 4 0 Ribosomal L32p protein family DNA_RNApol_7kD PF03604.13 gi|134046524|ref|YP_001098009.1| - 0.25 11.0 17.1 1.4 8.6 6.4 3.5 2 2 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Baculo_ME53 PF06061.11 gi|134046524|ref|YP_001098009.1| - 0.43 9.8 5.3 0.35 10.1 0.3 2.1 1 1 0 2 2 2 0 Baculoviridae ME53 DZR PF12773.7 gi|134046524|ref|YP_001098009.1| - 0.49 10.5 9.5 1.8 8.7 1.7 2.9 2 2 0 2 2 2 0 Double zinc ribbon zf-RRN7 PF11781.8 gi|134046524|ref|YP_001098009.1| - 0.64 9.7 0.1 0.64 9.7 0.1 3.2 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 A2L_zn_ribbon PF08792.10 gi|134046524|ref|YP_001098009.1| - 0.96 9.2 11.3 0.24 11.2 1.5 3.0 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-LSD1 PF06943.12 gi|134046524|ref|YP_001098009.1| - 1.1 9.1 12.7 0.65 9.9 0.3 3.7 4 0 0 4 4 4 0 LSD1 zinc finger DUF35_N PF12172.8 gi|134046524|ref|YP_001098009.1| - 1.3 8.9 13.5 0.94 9.4 1.0 3.8 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) NMD3 PF04981.13 gi|134046524|ref|YP_001098009.1| - 1.4 8.3 7.9 1.3 8.4 4.4 2.1 1 1 1 2 2 2 0 NMD3 family Nudix_N_2 PF14803.6 gi|134046524|ref|YP_001098009.1| - 2.8 7.9 10.4 4.1 7.4 1.4 3.2 2 2 0 2 2 2 0 Nudix N-terminal zf-CCHC PF00098.23 gi|134046524|ref|YP_001098009.1| - 8.1 6.7 21.4 7.8 6.8 1.1 4.2 4 0 0 4 4 4 0 Zinc knuckle AAA PF00004.29 gi|134046525|ref|YP_001098010.1| - 2.3e-97 322.5 0.2 2.9e-47 160.4 0.0 3.0 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|134046525|ref|YP_001098010.1| - 6e-31 106.0 1.3 3e-18 65.4 0.2 3.0 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|134046525|ref|YP_001098010.1| - 2.3e-30 104.6 0.5 9.3e-30 102.7 0.5 2.1 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|134046525|ref|YP_001098010.1| - 2.7e-17 63.4 0.1 8.5e-08 32.5 0.0 3.1 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|134046525|ref|YP_001098010.1| - 1.4e-16 60.6 0.0 6.8e-08 32.4 0.0 2.9 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|134046525|ref|YP_001098010.1| - 1.5e-14 54.7 0.0 9.2e-06 26.1 0.0 3.6 2 1 1 3 3 3 2 AAA ATPase domain TIP49 PF06068.13 gi|134046525|ref|YP_001098010.1| - 1.1e-13 51.2 0.0 1.9e-05 24.1 0.0 2.7 2 0 0 2 2 2 2 TIP49 P-loop domain CDC48_2 PF02933.17 gi|134046525|ref|YP_001098010.1| - 1.1e-13 50.7 0.9 1.1e-13 50.7 0.9 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.14 gi|134046525|ref|YP_001098010.1| - 3e-11 43.5 0.3 0.00027 21.0 0.0 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|134046525|ref|YP_001098010.1| - 4.8e-11 43.0 0.0 9.5e-05 22.6 0.0 3.4 3 1 0 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|134046525|ref|YP_001098010.1| - 6.1e-11 42.5 0.0 0.00016 21.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|134046525|ref|YP_001098010.1| - 7.1e-11 42.5 0.3 0.0073 16.6 0.1 4.3 2 2 0 3 3 3 2 AAA domain AAA_18 PF13238.6 gi|134046525|ref|YP_001098010.1| - 3.8e-09 37.2 0.1 0.0042 17.6 0.0 3.5 4 1 0 4 4 2 2 AAA domain IstB_IS21 PF01695.17 gi|134046525|ref|YP_001098010.1| - 1.7e-08 34.4 0.0 0.0069 16.1 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|134046525|ref|YP_001098010.1| - 1.7e-07 31.7 0.0 0.0095 16.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|134046525|ref|YP_001098010.1| - 4.4e-07 29.3 0.0 0.0053 16.0 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.6 gi|134046525|ref|YP_001098010.1| - 5.4e-07 29.4 0.7 1.4 8.5 0.0 4.0 4 0 0 4 4 4 3 AAA domain Sigma54_activat PF00158.26 gi|134046525|ref|YP_001098010.1| - 6.7e-07 29.2 0.1 0.083 12.6 0.0 3.9 2 2 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|134046525|ref|YP_001098010.1| - 7.2e-07 28.8 0.5 0.054 12.9 0.0 2.9 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 gi|134046525|ref|YP_001098010.1| - 1.6e-06 27.6 0.1 0.024 13.9 0.0 2.8 2 0 0 2 2 2 2 Zeta toxin AAA_7 PF12775.7 gi|134046525|ref|YP_001098010.1| - 1.8e-06 27.6 0.0 0.068 12.7 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region ABC_tran PF00005.27 gi|134046525|ref|YP_001098010.1| - 2.1e-06 28.3 0.1 0.11 13.0 0.0 3.1 2 1 0 2 2 2 2 ABC transporter RNA_helicase PF00910.22 gi|134046525|ref|YP_001098010.1| - 3.8e-06 27.3 0.0 0.15 12.5 0.0 2.8 2 0 0 2 2 2 2 RNA helicase TsaE PF02367.17 gi|134046525|ref|YP_001098010.1| - 5.2e-06 26.5 0.0 0.083 12.9 0.0 2.8 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|134046525|ref|YP_001098010.1| - 1.1e-05 25.3 0.0 0.096 12.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|134046525|ref|YP_001098010.1| - 1.1e-05 24.9 4.8 0.17 11.2 0.0 4.3 4 1 1 5 5 4 2 KaiC AAA_3 PF07726.11 gi|134046525|ref|YP_001098010.1| - 1.3e-05 25.0 0.0 0.064 13.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|134046525|ref|YP_001098010.1| - 2e-05 24.2 0.2 0.27 10.7 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein Vps4_C PF09336.10 gi|134046525|ref|YP_001098010.1| - 3.3e-05 23.8 0.2 0.0066 16.4 0.0 3.1 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain Bac_DnaA PF00308.18 gi|134046525|ref|YP_001098010.1| - 6.7e-05 22.8 0.0 0.1 12.4 0.0 2.9 2 1 0 2 2 2 1 Bacterial dnaA protein Sigma54_activ_2 PF14532.6 gi|134046525|ref|YP_001098010.1| - 0.00011 22.3 0.0 0.74 9.9 0.0 2.8 3 0 0 3 3 2 2 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|134046525|ref|YP_001098010.1| - 0.00012 22.1 0.3 1.1 9.1 0.0 3.9 3 1 1 4 4 4 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|134046525|ref|YP_001098010.1| - 0.00018 20.8 0.0 0.18 11.0 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|134046525|ref|YP_001098010.1| - 0.00022 21.0 0.0 1 9.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|134046525|ref|YP_001098010.1| - 0.00037 20.9 1.2 2.3 8.6 0.0 4.0 4 0 0 4 4 3 1 AAA domain NACHT PF05729.12 gi|134046525|ref|YP_001098010.1| - 0.00043 20.2 0.2 1.1 9.1 0.0 3.3 4 0 0 4 4 2 1 NACHT domain AAA_11 PF13086.6 gi|134046525|ref|YP_001098010.1| - 0.0011 18.8 0.8 2.3 7.9 0.0 2.9 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.6 gi|134046525|ref|YP_001098010.1| - 0.0012 19.2 1.1 2.6 8.4 0.0 3.2 2 1 1 3 3 2 1 AAA domain Parvo_NS1 PF01057.17 gi|134046525|ref|YP_001098010.1| - 0.0021 17.2 0.1 1.2 8.1 0.0 2.3 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 NTPase_1 PF03266.15 gi|134046525|ref|YP_001098010.1| - 0.0028 17.6 4.0 2.4 8.0 0.0 4.1 3 2 1 4 4 3 1 NTPase NB-ARC PF00931.22 gi|134046525|ref|YP_001098010.1| - 0.0031 16.8 0.0 2.3 7.4 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain Viral_helicase1 PF01443.18 gi|134046525|ref|YP_001098010.1| - 0.0037 17.0 0.0 0.8 9.4 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Cytidylate_kin2 PF13189.6 gi|134046525|ref|YP_001098010.1| - 0.0074 16.4 0.3 0.57 10.3 0.0 3.0 3 0 0 3 3 3 1 Cytidylate kinase-like family MCM PF00493.23 gi|134046525|ref|YP_001098010.1| - 0.0079 15.3 0.0 2.1 7.4 0.0 2.5 2 0 0 2 2 2 1 MCM P-loop domain ATP-synt_ab PF00006.25 gi|134046525|ref|YP_001098010.1| - 0.018 14.7 0.0 4.6 6.8 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Rad17 PF03215.15 gi|134046525|ref|YP_001098010.1| - 0.019 14.9 0.0 4.3 7.2 0.0 2.7 2 0 0 2 2 2 0 Rad17 P-loop domain T2SSE PF00437.20 gi|134046525|ref|YP_001098010.1| - 0.02 14.0 0.0 4.7 6.2 0.0 2.8 2 1 0 2 2 2 0 Type II/IV secretion system protein AFG1_ATPase PF03969.16 gi|134046525|ref|YP_001098010.1| - 0.029 13.3 0.0 5.3 5.8 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase AAA_29 PF13555.6 gi|134046525|ref|YP_001098010.1| - 0.033 13.9 0.0 11 5.8 0.0 2.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain SKI PF01202.22 gi|134046525|ref|YP_001098010.1| - 0.033 14.3 0.0 9.6 6.3 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase PduV-EutP PF10662.9 gi|134046525|ref|YP_001098010.1| - 0.04 13.7 0.1 9.9 5.9 0.0 2.9 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 gi|134046525|ref|YP_001098010.1| - 0.04 14.0 0.0 6.4 6.9 0.0 3.1 3 0 0 3 3 2 0 50S ribosome-binding GTPase ResIII PF04851.15 gi|134046525|ref|YP_001098010.1| - 0.063 13.3 0.1 12 5.9 0.0 2.9 3 1 0 3 3 2 0 Type III restriction enzyme, res subunit TniB PF05621.11 gi|134046525|ref|YP_001098010.1| - 0.066 12.6 0.0 19 4.6 0.0 3.1 3 1 1 4 4 2 0 Bacterial TniB protein Cytidylate_kin PF02224.18 gi|134046525|ref|YP_001098010.1| - 0.093 12.5 2.6 9.6 5.9 0.0 3.1 4 0 0 4 4 2 0 Cytidylate kinase cobW PF02492.19 gi|134046525|ref|YP_001098010.1| - 0.099 12.2 0.4 22 4.6 0.1 3.1 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain HD PF01966.22 gi|134046527|ref|YP_001098012.1| - 1.6e-15 57.4 1.1 5.8e-15 55.6 0.4 2.2 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 gi|134046527|ref|YP_001098012.1| - 0.0044 16.5 0.0 0.0085 15.6 0.0 1.4 1 0 0 1 1 1 1 HDOD domain CT_A_B PF02626.15 gi|134046527|ref|YP_001098012.1| - 0.23 11.1 0.0 0.46 10.1 0.0 1.4 1 0 0 1 1 1 0 Carboxyltransferase domain, subdomain A and B Mur_ligase_M PF08245.12 gi|134046528|ref|YP_001098013.1| - 6.6e-05 23.0 1.3 0.00085 19.4 0.1 2.4 1 1 1 2 2 2 1 Mur ligase middle domain GCH_III PF05165.12 gi|134046528|ref|YP_001098013.1| - 0.074 12.3 0.4 0.13 11.5 0.4 1.3 1 0 0 1 1 1 0 GTP cyclohydrolase III Oxygenase-NA PF09859.9 gi|134046528|ref|YP_001098013.1| - 0.086 12.4 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Oxygenase, catalysing oxidative methylation of damaged DNA DUF5409 PF17421.2 gi|134046529|ref|YP_001098014.1| - 0.42 11.4 7.3 0.21 12.4 5.0 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5409) UPF0014 PF03649.13 gi|134046530|ref|YP_001098015.1| - 8.9e-69 231.5 20.1 1e-68 231.3 20.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) TctB PF07331.11 gi|134046530|ref|YP_001098015.1| - 4.9 7.4 19.9 0.79 10.0 14.4 2.1 2 1 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family RimK PF08443.11 gi|134046531|ref|YP_001098016.1| - 5.8e-50 169.5 0.0 9.1e-50 168.9 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|134046531|ref|YP_001098016.1| - 1.2e-10 41.0 0.0 2.1e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|134046531|ref|YP_001098016.1| - 2.2e-10 40.8 0.1 4.6e-10 39.8 0.1 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|134046531|ref|YP_001098016.1| - 3.7e-08 32.9 0.0 5.6e-06 25.8 0.0 2.9 1 1 0 1 1 1 1 YheC/D like ATP-grasp Dala_Dala_lig_C PF07478.13 gi|134046531|ref|YP_001098016.1| - 0.00021 20.9 0.0 0.035 13.7 0.0 2.2 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|134046531|ref|YP_001098016.1| - 0.00025 20.6 0.0 0.0038 16.8 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|134046531|ref|YP_001098016.1| - 0.0031 16.8 0.1 1.5 8.0 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|134046531|ref|YP_001098016.1| - 0.026 14.1 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain DUF1802 PF08819.11 gi|134046531|ref|YP_001098016.1| - 0.13 12.1 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1802) Peptidase_M50 PF02163.22 gi|134046532|ref|YP_001098017.1| - 2.1e-21 76.3 4.4 3.5e-21 75.6 1.1 2.5 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.6 gi|134046532|ref|YP_001098017.1| - 3.9e-09 36.7 0.0 6.5e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|134046532|ref|YP_001098017.1| - 1.2e-07 31.4 0.0 2.2e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|134046532|ref|YP_001098017.1| - 0.00028 21.2 0.3 0.00067 20.0 0.0 1.7 2 0 0 2 2 2 1 PDZ domain Ac110_PIF PF07280.11 gi|134046532|ref|YP_001098017.1| - 0.0062 16.3 2.7 0.035 13.9 2.7 2.3 1 0 0 1 1 1 1 Per os infectivity factor AC110 Tricorn_PDZ PF14685.6 gi|134046532|ref|YP_001098017.1| - 0.02 14.8 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 Tricorn protease PDZ domain DUF3267 PF11667.8 gi|134046532|ref|YP_001098017.1| - 0.048 13.9 0.3 0.048 13.9 0.3 3.4 5 0 0 5 5 5 0 Putative zincin peptidase PDZ_1 PF12812.7 gi|134046532|ref|YP_001098017.1| - 0.052 13.6 0.1 0.51 10.4 0.0 2.2 2 0 0 2 2 2 0 PDZ-like domain PadR PF03551.14 gi|134046533|ref|YP_001098018.1| - 4.5e-16 58.6 0.1 7.9e-16 57.8 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF2513 PF10711.9 gi|134046533|ref|YP_001098018.1| - 0.00017 21.8 0.1 0.00035 20.8 0.0 1.6 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) DUF505 PF04458.12 gi|134046533|ref|YP_001098018.1| - 0.00052 18.5 0.2 0.00063 18.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) TrmB PF01978.19 gi|134046533|ref|YP_001098018.1| - 0.00084 19.2 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|134046533|ref|YP_001098018.1| - 0.0027 17.5 1.1 0.0056 16.4 0.4 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|134046533|ref|YP_001098018.1| - 0.013 16.0 0.0 0.025 15.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|134046533|ref|YP_001098018.1| - 0.014 15.2 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|134046533|ref|YP_001098018.1| - 0.014 15.3 0.0 0.041 13.9 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix Replic_Relax PF13814.6 gi|134046533|ref|YP_001098018.1| - 0.019 15.1 0.0 0.025 14.7 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation HTH_46 PF15977.5 gi|134046533|ref|YP_001098018.1| - 0.021 14.8 0.1 0.11 12.6 0.0 2.1 2 1 0 2 2 2 0 Winged helix-turn-helix DNA binding HxlR PF01638.17 gi|134046533|ref|YP_001098018.1| - 0.028 14.3 0.1 0.051 13.4 0.1 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix FUR PF01475.19 gi|134046533|ref|YP_001098018.1| - 0.033 14.4 0.2 0.11 12.7 0.1 2.0 2 0 0 2 2 2 0 Ferric uptake regulator family Mrr_N PF14338.6 gi|134046533|ref|YP_001098018.1| - 0.089 12.9 0.0 1.2 9.3 0.0 2.3 2 0 0 2 2 2 0 Mrr N-terminal domain MAP70 PF07058.11 gi|134046533|ref|YP_001098018.1| - 0.09 11.5 0.0 0.11 11.2 0.0 1.0 1 0 0 1 1 1 0 Microtubule-associated protein 70 HTH_34 PF13601.6 gi|134046533|ref|YP_001098018.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain ABC_tran PF00005.27 gi|134046534|ref|YP_001098019.1| - 2.1e-34 119.0 0.0 5e-34 117.8 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|134046534|ref|YP_001098019.1| - 7.8e-10 39.0 2.6 2.4e-06 27.6 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|134046534|ref|YP_001098019.1| - 1.4e-08 35.4 0.2 3.8e-08 33.9 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|134046534|ref|YP_001098019.1| - 3.1e-05 23.5 1.0 4.4e-05 23.0 0.2 1.6 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|134046534|ref|YP_001098019.1| - 0.00025 20.7 0.1 0.00048 19.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|134046534|ref|YP_001098019.1| - 0.00049 19.9 12.9 0.015 15.0 0.1 2.9 2 1 0 3 3 3 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|134046534|ref|YP_001098019.1| - 0.00068 19.6 0.5 0.0015 18.5 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase Rad17 PF03215.15 gi|134046534|ref|YP_001098019.1| - 0.0019 18.2 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|134046534|ref|YP_001098019.1| - 0.0019 18.7 7.0 0.0048 17.4 7.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|134046534|ref|YP_001098019.1| - 0.0096 15.7 0.0 0.017 14.8 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|134046534|ref|YP_001098019.1| - 0.012 15.2 0.2 0.021 14.3 0.2 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_22 PF13401.6 gi|134046534|ref|YP_001098019.1| - 0.015 15.6 0.1 0.12 12.7 0.1 2.2 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|134046534|ref|YP_001098019.1| - 0.018 14.7 0.1 0.035 13.7 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_10 PF12846.7 gi|134046534|ref|YP_001098019.1| - 0.04 12.9 0.1 0.11 11.4 0.1 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_27 PF13514.6 gi|134046534|ref|YP_001098019.1| - 0.07 12.7 0.2 0.17 11.4 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|134046534|ref|YP_001098019.1| - 0.095 13.1 1.8 1.4 9.3 0.8 3.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|134046534|ref|YP_001098019.1| - 0.11 12.6 0.9 0.22 11.6 0.8 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|134046534|ref|YP_001098019.1| - 0.18 12.2 0.0 0.28 11.5 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain MatE PF01554.18 gi|134046535|ref|YP_001098020.1| - 1.8e-61 206.5 39.9 2e-33 115.3 15.3 2.9 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|134046535|ref|YP_001098020.1| - 1.1e-09 38.4 22.3 1.1e-09 38.4 22.3 4.5 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain ABC2_membrane PF01061.24 gi|134046536|ref|YP_001098021.1| - 1.2e-37 129.4 18.3 1.2e-37 129.4 18.3 1.7 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|134046536|ref|YP_001098021.1| - 2.9e-13 49.7 25.9 2.9e-13 49.7 25.9 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|134046536|ref|YP_001098021.1| - 0.18 11.1 18.1 0.21 10.8 17.2 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein CbiX PF01903.17 gi|134046537|ref|YP_001098022.1| - 9.4e-30 103.1 0.6 1.3e-29 102.7 0.6 1.2 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|134046537|ref|YP_001098022.1| - 9.6e-09 34.9 0.2 1.4e-08 34.4 0.2 1.2 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) NTPase_1 PF03266.15 gi|134046537|ref|YP_001098022.1| - 0.004 17.1 0.0 0.0054 16.7 0.0 1.1 1 0 0 1 1 1 1 NTPase ArsA_ATPase PF02374.15 gi|134046538|ref|YP_001098023.1| - 2.7e-116 388.0 1.7 3.1e-116 387.8 1.7 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|134046538|ref|YP_001098023.1| - 6.3e-10 39.3 0.0 1.5e-09 38.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|134046538|ref|YP_001098023.1| - 1.5e-09 38.0 0.0 1.5e-08 34.7 0.0 2.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|134046538|ref|YP_001098023.1| - 2.9e-07 30.2 5.0 0.0052 16.3 2.4 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase SRP54 PF00448.22 gi|134046538|ref|YP_001098023.1| - 0.00015 21.5 0.8 0.0057 16.3 0.5 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 gi|134046538|ref|YP_001098023.1| - 0.00035 20.1 0.0 0.002 17.7 0.0 2.0 1 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|134046538|ref|YP_001098023.1| - 0.0031 17.0 0.0 0.0058 16.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ATP_bind_1 PF03029.17 gi|134046538|ref|YP_001098023.1| - 0.028 14.2 0.9 0.078 12.7 0.2 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.22 gi|134046538|ref|YP_001098023.1| - 0.028 13.6 0.1 0.054 12.7 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain MeaB PF03308.16 gi|134046538|ref|YP_001098023.1| - 0.036 13.1 0.1 0.091 11.7 0.1 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PhoH PF02562.16 gi|134046538|ref|YP_001098023.1| - 0.079 12.4 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein ResIII PF04851.15 gi|134046538|ref|YP_001098023.1| - 0.083 12.9 0.2 0.23 11.4 0.2 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Ca_bind_SSO6904 PF18249.1 gi|134046538|ref|YP_001098023.1| - 0.1 12.9 0.5 0.24 11.8 0.1 1.9 2 0 0 2 2 1 0 Calcium binding protein SSO6904 Tir_receptor_N PF07490.11 gi|134046538|ref|YP_001098023.1| - 0.11 12.3 0.1 1.8 8.3 0.1 2.0 2 0 0 2 2 2 0 Translocated intimin receptor (Tir) N-terminus DUF116 PF01976.17 gi|134046539|ref|YP_001098024.1| - 3.8e-43 146.7 0.1 4.9e-43 146.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 2-ph_phosp PF04029.14 gi|134046540|ref|YP_001098025.1| - 1.6e-57 194.3 0.1 1.9e-57 194.1 0.1 1.0 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase ProRS-C_2 PF09181.10 gi|134046540|ref|YP_001098025.1| - 0.00072 19.6 0.1 0.26 11.4 0.0 2.9 1 1 1 2 2 2 2 Prolyl-tRNA synthetase, C-terminal TPR_8 PF13181.6 gi|134046540|ref|YP_001098025.1| - 0.14 12.5 0.2 0.43 10.9 0.0 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat AMP-binding_C_2 PF14535.6 gi|134046541|ref|YP_001098026.1| - 1e-30 105.9 0.1 2.7e-30 104.5 0.1 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|134046541|ref|YP_001098026.1| - 2.6e-15 56.0 1.8 5.2e-15 55.0 1.8 1.5 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|134046541|ref|YP_001098026.1| - 0.0026 16.7 0.1 0.041 12.7 0.0 2.1 2 0 0 2 2 2 1 GH3 auxin-responsive promoter Ribosomal_L39 PF00832.20 gi|134046542|ref|YP_001098027.1| - 5.2e-19 67.6 9.4 6.1e-19 67.4 9.4 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein QueC PF06508.13 gi|134046543|ref|YP_001098028.1| - 4.4e-05 23.1 0.0 0.00014 21.4 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|134046543|ref|YP_001098028.1| - 0.0084 14.9 0.0 0.011 14.5 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|134046543|ref|YP_001098028.1| - 0.036 13.7 0.1 0.06 13.0 0.1 1.3 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.19 gi|134046543|ref|YP_001098028.1| - 0.13 12.2 0.0 0.39 10.7 0.0 1.8 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family dsDNA_bind PF01984.20 gi|134046544|ref|YP_001098029.1| - 2.4e-28 98.6 13.4 2.6e-28 98.5 13.4 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain EF-1_beta_acid PF10587.9 gi|134046544|ref|YP_001098029.1| - 5.9 7.4 11.5 2.3 8.8 2.8 2.5 2 0 0 2 2 2 0 Eukaryotic elongation factor 1 beta central acidic region Ribosomal_S19e PF01090.19 gi|134046545|ref|YP_001098030.1| - 7.5e-56 187.6 0.0 8.3e-56 187.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e Lar_N PF09861.9 gi|134046545|ref|YP_001098030.1| - 0.16 11.1 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Lactate racemase N-terminal domain CRS1_YhbY PF01985.21 gi|134046546|ref|YP_001098031.1| - 7.5e-17 61.3 3.6 1.1e-16 60.7 3.6 1.3 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Senescence PF06911.12 gi|134046546|ref|YP_001098031.1| - 0.045 14.1 1.9 0.049 13.9 1.9 1.2 1 0 0 1 1 1 0 Senescence-associated protein Toprim PF01751.22 gi|134046546|ref|YP_001098031.1| - 0.39 11.0 4.5 0.39 11.0 0.5 2.0 2 0 0 2 2 2 0 Toprim domain PASTA PF03793.19 gi|134046547|ref|YP_001098032.1| - 0.0011 18.7 0.1 0.0068 16.2 0.1 2.4 1 0 0 1 1 1 1 PASTA domain Cyclophil_like PF04126.13 gi|134046547|ref|YP_001098032.1| - 0.016 15.0 0.8 0.41 10.5 0.0 3.3 4 0 0 4 4 4 0 Cyclophilin-like Nt_Gln_amidase PF09764.9 gi|134046547|ref|YP_001098032.1| - 0.3 10.7 1.5 5.5 6.6 0.2 2.3 2 0 0 2 2 2 0 N-terminal glutamine amidase HMGL-like PF00682.19 gi|134046548|ref|YP_001098033.1| - 5.9e-82 275.2 1.7 8.1e-82 274.7 1.7 1.2 1 0 0 1 1 1 1 HMGL-like CitMHS PF03600.16 gi|134046549|ref|YP_001098034.1| - 2.3e-48 164.9 50.0 2.3e-48 164.9 50.0 2.4 2 1 1 3 3 3 2 Citrate transporter Na_sulph_symp PF00939.19 gi|134046549|ref|YP_001098034.1| - 6.5e-30 104.6 47.0 4.5e-14 52.3 22.0 3.3 2 2 1 3 3 3 3 Sodium:sulfate symporter transmembrane region OCIA PF07051.11 gi|134046549|ref|YP_001098034.1| - 0.01 15.9 0.6 3.4 7.8 0.0 2.8 2 1 0 2 2 2 0 Ovarian carcinoma immunoreactive antigen (OCIA) Ribosomal_L40e PF01020.17 gi|134046550|ref|YP_001098035.1| - 8e-07 28.8 7.4 9.9e-07 28.6 7.4 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.7 gi|134046550|ref|YP_001098035.1| - 0.0021 18.1 0.8 0.0023 17.9 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|134046550|ref|YP_001098035.1| - 0.0022 17.6 2.4 0.0022 17.6 2.4 2.0 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit SelP_N PF04592.14 gi|134046550|ref|YP_001098035.1| - 0.011 15.1 0.7 0.011 15.1 0.7 1.0 1 0 0 1 1 1 0 Selenoprotein P, N terminal region HypA PF01155.19 gi|134046550|ref|YP_001098035.1| - 0.029 14.4 1.1 0.029 14.4 1.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|134046550|ref|YP_001098035.1| - 0.03 13.7 2.7 0.037 13.4 2.7 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|134046550|ref|YP_001098035.1| - 0.12 12.1 4.3 0.43 10.4 4.4 1.7 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|134046550|ref|YP_001098035.1| - 0.17 12.1 4.1 0.22 11.7 0.1 2.0 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ribo_biogen_C PF04034.13 gi|134046551|ref|YP_001098036.1| - 1.7e-45 153.8 0.1 2.1e-45 153.6 0.1 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|134046551|ref|YP_001098036.1| - 3.7e-12 45.8 0.6 6.2e-12 45.1 0.6 1.4 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI UPF0020 PF01170.18 gi|134046552|ref|YP_001098037.1| - 7.5e-30 104.1 0.0 1e-28 100.4 0.0 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|134046552|ref|YP_001098037.1| - 1.4e-15 57.7 0.4 2.6e-15 56.8 0.4 1.5 1 0 0 1 1 1 1 THUMP domain Methyltransf_15 PF09445.10 gi|134046552|ref|YP_001098037.1| - 6.9e-10 38.8 0.0 1.3e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.18 gi|134046552|ref|YP_001098037.1| - 1.1e-08 35.2 0.0 1.1e-06 28.6 0.0 2.4 2 0 0 2 2 2 1 DNA methylase N6_Mtase PF02384.16 gi|134046552|ref|YP_001098037.1| - 2.3e-07 30.4 0.0 3.7e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_31 PF13847.6 gi|134046552|ref|YP_001098037.1| - 2.7e-07 30.5 0.1 5.7e-07 29.4 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|134046552|ref|YP_001098037.1| - 7.2e-07 29.0 0.0 1.2e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_5 PF01795.19 gi|134046552|ref|YP_001098037.1| - 2e-05 24.3 0.0 3.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 MraW methylase family Methyltransf_25 PF13649.6 gi|134046552|ref|YP_001098037.1| - 3.5e-05 24.4 0.0 8.4e-05 23.2 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain AviRa PF11599.8 gi|134046552|ref|YP_001098037.1| - 5.4e-05 22.8 0.2 0.0037 16.8 0.0 2.2 1 1 1 2 2 2 1 RRNA methyltransferase AviRa PrmA PF06325.13 gi|134046552|ref|YP_001098037.1| - 0.0018 17.7 0.0 0.0031 17.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.12 gi|134046552|ref|YP_001098037.1| - 0.01 16.6 0.0 0.021 15.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|134046552|ref|YP_001098037.1| - 0.012 15.5 0.0 0.031 14.1 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain MethyltransfD12 PF02086.15 gi|134046552|ref|YP_001098037.1| - 0.043 13.5 0.4 0.11 12.1 0.0 1.8 2 1 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_11 PF08241.12 gi|134046552|ref|YP_001098037.1| - 0.081 13.6 0.0 0.24 12.1 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain AMP-binding PF00501.28 gi|134046553|ref|YP_001098038.1| - 2e-91 306.7 0.0 2.4e-91 306.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|134046553|ref|YP_001098038.1| - 9e-21 74.6 0.1 1.9e-20 73.6 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|134046553|ref|YP_001098038.1| - 1.5e-20 72.8 5.3 5.9e-20 70.9 5.3 2.1 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Fer4_NifH PF00142.18 gi|134046554|ref|YP_001098039.1| - 1.8e-100 335.8 5.5 3.1e-100 335.1 5.5 1.3 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|134046554|ref|YP_001098039.1| - 1.1e-12 48.3 0.1 7.9e-12 45.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|134046554|ref|YP_001098039.1| - 1.3e-12 47.8 0.0 3e-12 46.7 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|134046554|ref|YP_001098039.1| - 1.3e-10 41.2 0.2 2.5e-06 27.1 0.1 2.4 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|134046554|ref|YP_001098039.1| - 6.5e-10 38.7 0.7 7.7e-10 38.4 0.0 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 gi|134046554|ref|YP_001098039.1| - 3.5e-05 22.9 1.3 4.9e-05 22.4 0.0 1.8 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|134046554|ref|YP_001098039.1| - 0.00011 22.0 1.0 0.00018 21.2 0.2 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MipZ PF09140.11 gi|134046554|ref|YP_001098039.1| - 0.0013 18.1 0.1 0.0021 17.4 0.1 1.2 1 0 0 1 1 1 1 ATPase MipZ RNA_helicase PF00910.22 gi|134046554|ref|YP_001098039.1| - 0.0075 16.6 0.0 0.022 15.1 0.0 1.8 1 0 0 1 1 1 1 RNA helicase AAA_25 PF13481.6 gi|134046554|ref|YP_001098039.1| - 0.015 14.9 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|134046554|ref|YP_001098039.1| - 0.028 14.8 0.0 0.051 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain CBP_BcsQ PF06564.12 gi|134046554|ref|YP_001098039.1| - 0.035 13.6 0.0 0.053 13.0 0.0 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ TrwB_AAD_bind PF10412.9 gi|134046554|ref|YP_001098039.1| - 0.041 12.8 0.0 0.064 12.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 gi|134046554|ref|YP_001098039.1| - 0.043 13.9 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|134046554|ref|YP_001098039.1| - 0.043 13.5 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|134046554|ref|YP_001098039.1| - 0.099 12.4 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ATP_bind_1 PF03029.17 gi|134046554|ref|YP_001098039.1| - 0.14 11.9 0.1 0.3 10.8 0.1 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NACHT PF05729.12 gi|134046554|ref|YP_001098039.1| - 0.18 11.7 0.2 0.46 10.4 0.2 1.7 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|134046554|ref|YP_001098039.1| - 0.2 11.4 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Amino_oxidase PF01593.24 gi|134046555|ref|YP_001098040.1| - 1.5e-15 57.4 0.0 5.9e-12 45.6 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|134046555|ref|YP_001098040.1| - 3.8e-15 55.9 0.1 7.5e-15 54.9 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|134046555|ref|YP_001098040.1| - 9.5e-09 34.9 1.6 0.00077 18.8 1.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|134046555|ref|YP_001098040.1| - 1.5e-07 30.9 0.3 2.1e-07 30.4 0.3 1.1 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|134046555|ref|YP_001098040.1| - 1.5e-06 27.8 0.4 2.6e-06 27.1 0.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|134046555|ref|YP_001098040.1| - 1.7e-06 27.9 2.1 9.5e-06 25.4 0.4 2.7 3 1 1 4 4 4 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|134046555|ref|YP_001098040.1| - 2.2e-06 26.6 1.3 1.6e-05 23.9 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|134046555|ref|YP_001098040.1| - 1.7e-05 24.2 0.4 0.0014 18.0 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|134046555|ref|YP_001098040.1| - 0.00027 20.3 0.3 0.00049 19.5 0.3 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|134046555|ref|YP_001098040.1| - 0.00044 20.8 0.4 0.00044 20.8 0.4 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|134046555|ref|YP_001098040.1| - 0.00054 19.2 0.3 0.0014 17.8 0.0 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|134046555|ref|YP_001098040.1| - 0.0009 18.2 0.3 0.0015 17.4 0.3 1.3 1 0 0 1 1 1 1 Tryptophan halogenase Thi4 PF01946.17 gi|134046555|ref|YP_001098040.1| - 0.00096 18.5 0.3 0.0018 17.6 0.3 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|134046555|ref|YP_001098040.1| - 0.0012 18.8 0.0 0.021 14.8 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding FMO-like PF00743.19 gi|134046555|ref|YP_001098040.1| - 0.0075 14.7 0.1 0.014 13.8 0.1 1.4 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like Pribosyltran PF00156.27 gi|134046556|ref|YP_001098041.1| - 9.5e-16 57.7 1.9 1.2e-15 57.4 1.9 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|134046556|ref|YP_001098041.1| - 6.9e-05 22.4 0.2 0.00011 21.7 0.0 1.5 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|134046556|ref|YP_001098041.1| - 0.00062 19.3 0.1 0.00098 18.7 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase FAA_hydrolase PF01557.18 gi|134046557|ref|YP_001098042.1| - 1.8e-66 223.9 0.0 2.1e-66 223.8 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2709 PF10915.8 gi|134046557|ref|YP_001098042.1| - 0.036 13.3 0.2 0.052 12.8 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2709) DUF4923 PF16270.5 gi|134046557|ref|YP_001098042.1| - 0.078 12.8 0.6 8.3 6.2 0.1 2.1 2 0 0 2 2 2 0 Lipocalin-like domain (DUF4923) DUF2117 PF09890.9 gi|134046558|ref|YP_001098043.1| - 5.7e-75 251.4 10.1 9.3e-75 250.7 10.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) DUF1464 PF07318.12 gi|134046558|ref|YP_001098043.1| - 0.0049 16.1 1.0 0.014 14.5 0.0 2.3 3 0 0 3 3 3 1 Protein of unknown function (DUF1464) zinc_ribbon_2 PF13240.6 gi|134046559|ref|YP_001098044.1| - 0.002 17.8 5.5 0.002 17.8 5.5 1.8 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|134046559|ref|YP_001098044.1| - 0.003 17.0 4.3 0.68 9.5 0.1 3.2 3 0 0 3 3 3 2 TFIIB zinc-binding DZR PF12773.7 gi|134046559|ref|YP_001098044.1| - 0.0038 17.2 1.6 0.0038 17.2 1.6 1.7 2 0 0 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|134046559|ref|YP_001098044.1| - 0.011 15.1 8.1 0.24 10.9 1.1 2.4 1 1 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|134046559|ref|YP_001098044.1| - 0.013 15.3 0.5 0.026 14.4 0.5 1.5 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.19 gi|134046559|ref|YP_001098044.1| - 0.02 14.9 0.2 0.032 14.3 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_2 PF13923.6 gi|134046559|ref|YP_001098044.1| - 0.048 13.5 1.3 0.12 12.2 1.3 1.7 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF116 PF01976.17 gi|134046559|ref|YP_001098044.1| - 0.065 12.8 1.3 0.11 12.1 1.3 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF116 A2L_zn_ribbon PF08792.10 gi|134046559|ref|YP_001098044.1| - 0.49 10.2 4.6 2.6 7.9 4.6 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ISL3 PF14690.6 gi|134046559|ref|YP_001098044.1| - 0.76 10.5 3.0 3.6 8.3 0.2 2.6 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.11 gi|134046559|ref|YP_001098044.1| - 6.2 6.6 8.0 2.8e+02 1.3 8.0 2.3 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain TPP_enzyme_N PF02776.18 gi|134046560|ref|YP_001098045.1| - 6.1e-35 120.3 0.0 1.7e-34 118.9 0.0 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|134046560|ref|YP_001098045.1| - 2e-29 102.4 0.4 8.5e-28 97.1 0.4 2.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|134046560|ref|YP_001098045.1| - 1.3e-14 54.1 0.0 3e-14 52.9 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Mur_ligase_C PF02875.21 gi|134046560|ref|YP_001098045.1| - 0.061 13.6 0.0 0.5 10.6 0.0 2.3 2 0 0 2 2 2 0 Mur ligase family, glutamate ligase domain zf-C4_Topoisom PF01396.19 gi|134046561|ref|YP_001098046.1| - 8.9e-14 51.0 2.6 2.8e-13 49.4 2.6 1.9 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.6 gi|134046561|ref|YP_001098046.1| - 0.057 12.8 0.2 0.11 12.0 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Sua5_yciO_yrdC PF01300.18 gi|134046562|ref|YP_001098047.1| - 1.3e-38 132.3 0.0 2e-38 131.7 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|134046562|ref|YP_001098047.1| - 8.2e-29 99.1 13.3 3.8e-14 52.1 0.8 2.4 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|134046562|ref|YP_001098047.1| - 3.9e-26 91.7 0.0 1e-25 90.4 0.0 1.8 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|134046562|ref|YP_001098047.1| - 1.2e-22 80.1 0.0 2.9e-22 78.9 0.0 1.7 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|134046562|ref|YP_001098047.1| - 1.8e-06 27.9 0.0 0.0016 18.2 0.1 2.4 2 0 0 2 2 2 2 Glycoprotease family FrhB_FdhB_C PF04432.13 gi|134046563|ref|YP_001098048.1| - 4.1e-39 133.9 0.3 4.1e-39 133.9 0.3 2.1 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|134046563|ref|YP_001098048.1| - 4.7e-20 71.5 0.0 1.2e-19 70.2 0.0 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_17 PF13534.6 gi|134046563|ref|YP_001098048.1| - 6.1e-06 26.7 15.7 0.00013 22.4 13.8 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134046563|ref|YP_001098048.1| - 1.8e-05 25.1 15.4 0.00048 20.5 14.0 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134046563|ref|YP_001098048.1| - 3.4e-05 24.7 14.2 0.029 15.3 1.0 3.9 4 0 0 4 4 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|134046563|ref|YP_001098048.1| - 8.2e-05 22.3 3.7 8.2e-05 22.3 3.7 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134046563|ref|YP_001098048.1| - 0.00096 19.3 20.1 0.094 12.9 18.0 3.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|134046563|ref|YP_001098048.1| - 0.0013 18.9 8.9 0.12 12.6 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134046563|ref|YP_001098048.1| - 0.0014 19.0 3.5 0.0014 19.0 3.5 3.7 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134046563|ref|YP_001098048.1| - 0.002 18.7 19.9 0.021 15.4 3.5 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134046563|ref|YP_001098048.1| - 0.0034 17.5 22.5 0.0042 17.2 2.1 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134046563|ref|YP_001098048.1| - 0.0041 17.1 18.4 0.028 14.5 3.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|134046563|ref|YP_001098048.1| - 0.019 15.9 4.2 0.019 15.9 4.2 3.9 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134046563|ref|YP_001098048.1| - 0.025 14.7 5.1 0.025 14.7 5.1 3.1 3 1 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|134046563|ref|YP_001098048.1| - 0.054 14.3 19.7 0.51 11.2 0.9 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134046563|ref|YP_001098048.1| - 2.4 8.4 21.6 3.2 7.9 6.8 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Myosin_N PF02736.19 gi|134046563|ref|YP_001098048.1| - 3.1 7.7 5.3 0.89 9.4 0.7 2.3 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Molybdopterin PF00384.22 gi|134046564|ref|YP_001098049.1| - 4.4e-97 325.8 0.0 6.3e-97 325.3 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|134046564|ref|YP_001098049.1| - 3.9e-30 104.1 0.1 7.2e-30 103.3 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|134046564|ref|YP_001098049.1| - 1.9e-20 72.6 3.0 1.9e-20 72.6 3.0 1.9 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain SIS PF01380.22 gi|134046564|ref|YP_001098049.1| - 0.013 15.4 0.2 0.033 14.0 0.2 1.7 1 0 0 1 1 1 0 SIS domain CDC48_N PF02359.18 gi|134046564|ref|YP_001098049.1| - 0.046 13.9 0.2 0.46 10.7 0.1 2.3 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain Molybdopterin_N PF18364.1 gi|134046564|ref|YP_001098049.1| - 0.14 12.2 0.2 0.39 10.8 0.2 1.7 1 0 0 1 1 1 0 Molybdopterin oxidoreductase N-terminal domain DS PF01916.17 gi|134046565|ref|YP_001098050.1| - 2.1e-115 385.0 0.0 2.4e-115 384.7 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase ERK-JNK_inhib PF15002.6 gi|134046565|ref|YP_001098050.1| - 0.15 11.8 0.6 5.4 6.7 0.0 2.7 2 1 1 3 3 3 0 ERK and JNK pathways, inhibitor Aconitase_C PF00694.19 gi|134046566|ref|YP_001098051.1| - 1.7e-21 76.9 0.0 3.2e-21 76.0 0.0 1.5 2 0 0 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|134046566|ref|YP_001098051.1| - 0.034 13.8 0.2 0.17 11.5 0.2 2.0 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus DUF3006 PF11213.8 gi|134046566|ref|YP_001098051.1| - 0.055 13.7 0.0 0.24 11.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3006) PALP PF00291.25 gi|134046567|ref|YP_001098052.1| - 1.8e-79 267.3 0.5 2.1e-79 267.0 0.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Auto_anti-p27 PF06677.12 gi|134046568|ref|YP_001098053.1| - 1.6e-11 44.1 0.2 2.2e-11 43.7 0.2 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_15 PF17032.5 gi|134046568|ref|YP_001098053.1| - 0.032 15.0 0.3 0.032 15.0 0.3 1.6 2 0 0 2 2 2 0 zinc-ribbon family A2L_zn_ribbon PF08792.10 gi|134046568|ref|YP_001098053.1| - 0.035 13.8 2.5 0.073 12.8 2.5 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|134046568|ref|YP_001098053.1| - 0.036 13.5 2.6 4.5 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|134046568|ref|YP_001098053.1| - 0.05 13.5 1.2 0.12 12.3 1.2 1.5 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|134046568|ref|YP_001098053.1| - 0.069 13.2 0.2 0.12 12.4 0.2 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1610 PF07754.11 gi|134046568|ref|YP_001098053.1| - 0.077 13.0 4.7 0.3 11.1 4.7 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) Prok-RING_1 PF14446.6 gi|134046568|ref|YP_001098053.1| - 0.078 12.9 0.3 0.12 12.3 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 RecR PF02132.15 gi|134046568|ref|YP_001098053.1| - 0.2 11.3 1.6 8.3 6.1 0.1 2.6 3 0 0 3 3 3 0 RecR protein mCpol PF18182.1 gi|134046568|ref|YP_001098053.1| - 0.39 11.1 3.5 6 7.2 0.3 2.2 1 1 1 2 2 2 0 minimal CRISPR polymerase domain zinc_ribbon_2 PF13240.6 gi|134046568|ref|YP_001098053.1| - 3.6 7.4 7.7 46 3.9 7.7 2.4 1 1 0 1 1 1 0 zinc-ribbon domain MarR PF01047.22 gi|134046569|ref|YP_001098054.1| - 9.5e-16 57.5 0.1 4.3e-15 55.4 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|134046569|ref|YP_001098054.1| - 5.2e-12 46.1 0.8 8.1e-12 45.5 0.8 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|134046569|ref|YP_001098054.1| - 7.8e-10 38.5 0.0 1.2e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|134046569|ref|YP_001098054.1| - 2e-07 31.1 0.2 5.1e-07 29.8 0.2 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|134046569|ref|YP_001098054.1| - 2.5e-06 27.0 0.0 5.5e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|134046569|ref|YP_001098054.1| - 3.1e-05 24.1 0.2 6.8e-05 23.0 0.2 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|134046569|ref|YP_001098054.1| - 8.6e-05 22.4 0.6 8.6e-05 22.4 0.6 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|134046569|ref|YP_001098054.1| - 0.00018 21.2 0.0 0.00053 19.7 0.0 1.8 2 0 0 2 2 2 1 LexA DNA binding domain HTH_IclR PF09339.10 gi|134046569|ref|YP_001098054.1| - 0.00023 20.9 0.0 0.00039 20.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|134046569|ref|YP_001098054.1| - 0.0015 18.5 0.0 0.0028 17.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|134046569|ref|YP_001098054.1| - 0.0031 17.6 0.0 0.0059 16.7 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC GntR PF00392.21 gi|134046569|ref|YP_001098054.1| - 0.0035 17.0 0.0 0.012 15.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Spore_III_AB PF09548.10 gi|134046569|ref|YP_001098054.1| - 0.0044 17.1 1.5 0.0066 16.6 1.5 1.3 1 0 0 1 1 1 1 Stage III sporulation protein AB (spore_III_AB) HTH_Crp_2 PF13545.6 gi|134046569|ref|YP_001098054.1| - 0.005 16.8 0.0 0.008 16.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MqsR_toxin PF15723.5 gi|134046569|ref|YP_001098054.1| - 0.011 16.1 1.8 0.52 10.7 0.1 2.8 2 1 1 3 3 3 0 Motility quorum-sensing regulator, toxin of MqsA HxlR PF01638.17 gi|134046569|ref|YP_001098054.1| - 0.012 15.4 0.2 0.025 14.4 0.2 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_5 PF01022.20 gi|134046569|ref|YP_001098054.1| - 0.017 15.0 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|134046569|ref|YP_001098054.1| - 0.022 14.8 0.0 0.044 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Oscp1 PF10188.9 gi|134046569|ref|YP_001098054.1| - 0.05 13.7 0.5 0.086 13.0 0.2 1.5 2 0 0 2 2 2 0 Organic solute transport protein 1 HTH_10 PF04967.12 gi|134046569|ref|YP_001098054.1| - 0.051 13.4 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_WhiA PF02650.14 gi|134046569|ref|YP_001098054.1| - 0.057 13.8 1.4 6.1 7.3 0.0 2.8 1 1 2 3 3 3 0 WhiA C-terminal HTH domain HTH_11 PF08279.12 gi|134046569|ref|YP_001098054.1| - 0.062 13.2 0.1 0.16 11.9 0.1 1.7 1 0 0 1 1 1 0 HTH domain Replic_Relax PF13814.6 gi|134046569|ref|YP_001098054.1| - 0.067 13.2 0.0 0.085 12.9 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation UBA_2 PF08587.11 gi|134046569|ref|YP_001098054.1| - 0.082 13.0 0.1 0.082 13.0 0.1 2.2 2 1 0 2 2 2 0 Ubiquitin associated domain (UBA) DUF501 PF04417.12 gi|134046569|ref|YP_001098054.1| - 0.12 12.2 0.5 0.27 11.1 0.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF501) HTH_AsnC-type PF13404.6 gi|134046569|ref|YP_001098054.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|134046569|ref|YP_001098054.1| - 0.21 11.6 0.0 0.62 10.1 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_22 PF13309.6 gi|134046569|ref|YP_001098054.1| - 0.42 10.7 2.2 0.86 9.7 0.5 2.5 2 1 0 2 2 1 0 HTH domain MCPsignal PF00015.21 gi|134046570|ref|YP_001098055.1| - 1.8e-32 112.5 49.6 1.9e-30 105.9 17.3 5.3 1 1 4 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain sCache_3_3 PF17202.4 gi|134046570|ref|YP_001098055.1| - 7.3e-25 87.5 0.2 7.3e-25 87.5 0.2 3.5 4 0 0 4 4 2 1 Single cache domain 3 dCache_3 PF14827.6 gi|134046570|ref|YP_001098055.1| - 7.6e-14 51.9 0.1 7.6e-14 51.9 0.1 2.7 3 0 0 3 3 2 1 Double sensory domain of two-component sensor kinase HAMP PF00672.25 gi|134046570|ref|YP_001098055.1| - 2e-13 50.5 1.7 1.6e-08 34.8 0.0 4.3 5 0 0 5 5 2 2 HAMP domain Cache_3-Cache_2 PF17201.4 gi|134046570|ref|YP_001098055.1| - 1.1e-11 44.6 0.7 1.1e-11 44.6 0.7 3.5 2 1 1 3 3 3 1 Cache 3/Cache 2 fusion domain DUF948 PF06103.11 gi|134046570|ref|YP_001098055.1| - 2.3e-06 27.7 40.6 0.016 15.4 1.4 7.1 2 1 3 6 6 5 3 Bacterial protein of unknown function (DUF948) CHASE4 PF05228.13 gi|134046570|ref|YP_001098055.1| - 3.7e-06 27.2 0.1 1.2e-05 25.5 0.0 1.9 2 0 0 2 2 1 1 CHASE4 domain DUF1664 PF07889.12 gi|134046570|ref|YP_001098055.1| - 1.9e-05 24.7 29.7 0.16 12.0 0.3 5.5 3 1 2 5 5 5 3 Protein of unknown function (DUF1664) Prominin PF05478.11 gi|134046570|ref|YP_001098055.1| - 4.3e-05 21.7 18.3 0.00039 18.5 11.9 2.4 1 1 0 2 2 2 2 Prominin Collagen_mid PF15984.5 gi|134046570|ref|YP_001098055.1| - 5.6e-05 23.0 4.1 0.02 14.6 0.1 3.6 2 1 1 3 3 3 2 Bacterial collagen, middle region DUF885 PF05960.11 gi|134046570|ref|YP_001098055.1| - 7.2e-05 22.6 6.7 0.026 14.2 1.0 2.3 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF885) sCache_3_2 PF17203.4 gi|134046570|ref|YP_001098055.1| - 0.0014 18.7 8.1 0.009 16.1 0.0 4.5 3 2 1 5 5 4 1 Single cache domain 3 Syntaxin-6_N PF09177.11 gi|134046570|ref|YP_001098055.1| - 0.011 16.3 26.6 3.6 8.2 1.0 4.9 1 1 2 3 3 3 0 Syntaxin 6, N-terminal SpecificRecomb PF10136.9 gi|134046570|ref|YP_001098055.1| - 0.081 11.2 4.8 0.14 10.4 4.8 1.4 1 0 0 1 1 1 0 Site-specific recombinase BLOC1_2 PF10046.9 gi|134046570|ref|YP_001098055.1| - 0.11 12.8 33.8 0.23 11.8 0.6 5.8 4 1 1 6 6 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 GARP PF16731.5 gi|134046570|ref|YP_001098055.1| - 0.19 11.4 36.0 0.8 9.4 4.5 4.0 1 1 2 3 3 3 0 Glutamic acid/alanine-rich protein of Trypanosoma DUF2779 PF11074.8 gi|134046570|ref|YP_001098055.1| - 0.24 11.9 2.6 11 6.5 0.1 3.1 1 1 2 3 3 2 0 Domain of unknown function(DUF2779) DUF1043 PF06295.12 gi|134046570|ref|YP_001098055.1| - 0.26 11.3 15.2 5.8 6.9 0.1 4.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1043) YscO PF07321.12 gi|134046570|ref|YP_001098055.1| - 0.26 11.2 17.9 2.4 8.1 13.4 2.6 2 0 0 2 2 2 0 Type III secretion protein YscO IFT57 PF10498.9 gi|134046570|ref|YP_001098055.1| - 0.32 9.9 27.2 1.8 7.5 0.4 4.5 2 1 2 5 5 5 0 Intra-flagellar transport protein 57 Spectrin PF00435.21 gi|134046570|ref|YP_001098055.1| - 0.34 11.4 18.6 1.7 9.2 6.7 4.9 4 1 1 5 5 5 0 Spectrin repeat Fib_alpha PF08702.10 gi|134046570|ref|YP_001098055.1| - 0.36 11.0 34.6 0.023 14.9 9.4 5.3 2 1 4 6 6 6 0 Fibrinogen alpha/beta chain family WXG100 PF06013.12 gi|134046570|ref|YP_001098055.1| - 0.41 10.9 19.8 30 4.9 6.3 5.8 5 1 0 6 6 4 0 Proteins of 100 residues with WXG Laminin_I PF06008.14 gi|134046570|ref|YP_001098055.1| - 0.52 10.0 35.0 1.6 8.4 0.5 4.1 2 1 1 3 3 3 0 Laminin Domain I Glu-tRNAGln PF02686.15 gi|134046570|ref|YP_001098055.1| - 0.58 10.5 9.8 0.99 9.7 2.3 3.8 3 1 1 4 4 2 0 Glu-tRNAGln amidotransferase C subunit Med30 PF11315.8 gi|134046570|ref|YP_001098055.1| - 0.6 10.3 14.9 0.27 11.4 1.5 3.9 2 1 0 3 3 3 0 Mediator complex subunit 30 HSBP1 PF06825.12 gi|134046570|ref|YP_001098055.1| - 0.61 10.0 4.1 0.68 9.8 0.1 3.3 3 0 0 3 3 3 0 Heat shock factor binding protein 1 Rrn6 PF10214.9 gi|134046570|ref|YP_001098055.1| - 0.68 8.4 6.3 1.1 7.7 6.3 1.3 1 0 0 1 1 1 0 RNA polymerase I-specific transcription-initiation factor RasGAP_C PF03836.15 gi|134046570|ref|YP_001098055.1| - 0.77 9.9 10.5 0.61 10.2 6.4 2.8 1 1 1 2 2 2 0 RasGAP C-terminus DUF2959 PF11172.8 gi|134046570|ref|YP_001098055.1| - 0.77 9.9 30.1 1.6 8.9 13.7 4.9 3 1 2 5 5 5 0 Protein of unknown function (DUF2959) Sec34 PF04136.15 gi|134046570|ref|YP_001098055.1| - 0.96 9.3 17.8 7.8 6.4 0.2 4.6 4 1 1 5 5 4 0 Sec34-like family DUF3450 PF11932.8 gi|134046570|ref|YP_001098055.1| - 1.4 8.2 26.3 1.2 8.3 9.8 3.7 3 1 1 4 4 3 0 Protein of unknown function (DUF3450) ISG65-75 PF11727.8 gi|134046570|ref|YP_001098055.1| - 1.4 8.1 31.7 0.84 8.8 3.2 3.8 1 1 3 4 4 4 0 Invariant surface glycoprotein DUF3549 PF12069.8 gi|134046570|ref|YP_001098055.1| - 1.5 7.7 9.1 1.9 7.4 4.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3549) Laminin_II PF06009.12 gi|134046570|ref|YP_001098055.1| - 2.3 8.2 38.6 3.7 7.6 11.2 5.9 2 2 3 5 5 5 0 Laminin Domain II DUF745 PF05335.13 gi|134046570|ref|YP_001098055.1| - 2.5 7.8 33.3 2.5 7.8 18.0 4.2 1 1 4 5 5 5 0 Protein of unknown function (DUF745) Herpes_UL6 PF01763.16 gi|134046570|ref|YP_001098055.1| - 3.1 6.2 22.4 0.15 10.6 10.5 2.3 1 1 1 2 2 2 0 Herpesvirus UL6 like Occludin_ELL PF07303.13 gi|134046570|ref|YP_001098055.1| - 4 8.2 8.6 47 4.8 2.7 4.7 4 1 1 5 5 4 0 Occludin homology domain T7SS_ESX_EspC PF10824.8 gi|134046570|ref|YP_001098055.1| - 4.8 7.7 19.2 28 5.3 6.2 4.8 3 2 1 4 4 4 0 Excreted virulence factor EspC, type VII ESX diderm Mce4_CUP1 PF11887.8 gi|134046570|ref|YP_001098055.1| - 5 6.5 15.5 3.1 7.2 0.2 3.7 2 1 2 4 4 4 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF4201 PF13870.6 gi|134046570|ref|YP_001098055.1| - 5.1 6.8 18.8 5 6.8 9.0 3.4 4 0 0 4 4 4 0 Domain of unknown function (DUF4201) DUF2203 PF09969.9 gi|134046570|ref|YP_001098055.1| - 7.3 7.3 24.9 1.4 9.7 1.4 5.3 2 1 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) SKA1 PF07160.12 gi|134046570|ref|YP_001098055.1| - 7.6 6.3 20.8 1.1 9.0 10.8 3.6 2 2 1 3 3 3 0 Spindle and kinetochore-associated protein 1 TPR_MLP1_2 PF07926.12 gi|134046570|ref|YP_001098055.1| - 9.9 6.2 30.4 4.3 7.4 13.8 4.8 3 2 2 5 5 5 0 TPR/MLP1/MLP2-like protein IMPDH PF00478.25 gi|134046571|ref|YP_001098056.1| - 3e-147 490.2 5.5 3.4e-147 489.9 5.5 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|134046571|ref|YP_001098056.1| - 7.1e-26 90.4 5.6 2.8e-12 46.9 0.2 3.7 3 1 1 4 4 4 2 CBS domain FMN_dh PF01070.18 gi|134046571|ref|YP_001098056.1| - 2.1e-14 53.3 6.8 9.6e-13 47.9 4.0 2.5 3 0 0 3 3 3 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|134046571|ref|YP_001098056.1| - 1.1e-11 44.8 7.9 7.1e-08 32.2 6.5 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase Glu_synthase PF01645.17 gi|134046571|ref|YP_001098056.1| - 4e-07 29.5 7.2 6.3e-07 28.9 7.2 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|134046571|ref|YP_001098056.1| - 2.6e-06 27.1 8.4 9.2e-06 25.3 4.4 3.4 2 1 0 2 2 2 1 Histidine biosynthesis protein Dus PF01207.17 gi|134046571|ref|YP_001098056.1| - 3.8e-05 23.0 1.4 0.00011 21.4 0.6 1.9 1 1 1 2 2 2 1 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|134046571|ref|YP_001098056.1| - 0.00017 21.0 6.8 0.0012 18.2 6.3 2.4 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|134046571|ref|YP_001098056.1| - 0.0002 20.7 6.2 0.11 11.8 2.5 2.5 1 1 1 2 2 2 2 Thiamine monophosphate synthase PcrB PF01884.17 gi|134046571|ref|YP_001098056.1| - 0.00046 19.7 9.7 0.086 12.3 0.5 3.3 3 0 0 3 3 3 2 PcrB family NanE PF04131.14 gi|134046571|ref|YP_001098056.1| - 0.00054 19.2 4.3 0.0022 17.2 4.3 2.2 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|134046571|ref|YP_001098056.1| - 0.00098 18.4 4.2 0.0018 17.5 1.3 2.4 1 1 1 2 2 2 1 Dihydroorotate dehydrogenase IGPS PF00218.21 gi|134046571|ref|YP_001098056.1| - 0.0069 15.6 0.2 0.052 12.7 0.0 2.2 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase G3P_antiterm PF04309.12 gi|134046571|ref|YP_001098056.1| - 0.0089 15.5 6.0 0.019 14.4 0.3 3.1 3 0 0 3 3 3 1 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|134046571|ref|YP_001098056.1| - 0.014 14.2 2.3 0.11 11.4 0.7 2.4 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Beta_elim_lyase PF01212.21 gi|134046571|ref|YP_001098056.1| - 0.015 14.6 0.7 0.028 13.7 0.7 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase DUF561 PF04481.12 gi|134046571|ref|YP_001098056.1| - 0.03 13.5 2.7 0.034 13.3 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF561) Aminotran_4 PF01063.19 gi|134046572|ref|YP_001098057.1| - 8.2e-54 182.8 0.0 9.5e-54 182.6 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Pyridoxal_deC PF00282.19 gi|134046573|ref|YP_001098058.1| - 1.5e-30 106.2 0.0 2.3e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_1_2 PF00155.21 gi|134046573|ref|YP_001098058.1| - 6e-09 35.5 0.0 2.8e-08 33.4 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|134046573|ref|YP_001098058.1| - 2.7e-06 26.6 0.0 7.2e-06 25.2 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|134046573|ref|YP_001098058.1| - 8.2e-06 25.3 0.0 3.1e-05 23.4 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase SepSecS PF05889.13 gi|134046573|ref|YP_001098058.1| - 0.0066 15.2 0.1 0.31 9.7 0.0 2.1 2 0 0 2 2 2 2 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Fumerase PF05681.14 gi|134046574|ref|YP_001098059.1| - 3.2e-93 312.1 0.3 3.6e-93 311.9 0.3 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) zinc_ribbon_12 PF11331.8 gi|134046574|ref|YP_001098059.1| - 0.041 13.7 0.1 0.22 11.4 0.0 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain PHP PF02811.19 gi|134046575|ref|YP_001098060.1| - 1.4e-08 35.2 0.1 4.4e-08 33.6 0.0 1.6 1 1 0 1 1 1 1 PHP domain Dus PF01207.17 gi|134046575|ref|YP_001098060.1| - 0.016 14.3 0.0 0.32 10.0 0.0 2.2 2 1 0 2 2 2 0 Dihydrouridine synthase (Dus) RNase_P_p30 PF01876.16 gi|134046575|ref|YP_001098060.1| - 0.03 13.8 0.2 0.061 12.8 0.2 1.5 1 1 0 1 1 1 0 RNase P subunit p30 PEP-utilizers PF00391.23 gi|134046575|ref|YP_001098060.1| - 0.039 13.7 0.2 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 PEP-utilising enzyme, mobile domain Cyclase PF04199.13 gi|134046576|ref|YP_001098061.1| - 3.5e-12 46.7 0.0 2.3e-11 44.1 0.0 1.9 1 1 0 1 1 1 1 Putative cyclase YfmQ PF10787.9 gi|134046576|ref|YP_001098061.1| - 0.023 14.4 1.1 2.6 7.8 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein from bacillus cereus group Rubredoxin_C PF18267.1 gi|134046576|ref|YP_001098061.1| - 0.059 13.3 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Rubredoxin NAD+ reductase C-terminal domain CBM39 PF15886.5 gi|134046576|ref|YP_001098061.1| - 0.083 12.8 0.1 0.5 10.3 0.0 2.0 2 0 0 2 2 2 0 Carbohydrate binding domain (family 32) HMD PF03201.16 gi|134046577|ref|YP_001098062.1| - 2.8e-39 133.2 0.1 5.2e-39 132.4 0.1 1.5 1 0 0 1 1 1 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase PDH PF02153.17 gi|134046577|ref|YP_001098062.1| - 0.0021 17.1 0.2 0.0035 16.4 0.2 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.15 gi|134046577|ref|YP_001098062.1| - 0.0034 17.6 0.0 0.0084 16.3 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase PnpCD_PnpD_N PF18191.1 gi|134046577|ref|YP_001098062.1| - 0.057 13.0 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Hydroquinone 1,2-dioxygenase large subunit N-terminal Radical_SAM PF04055.21 gi|134046578|ref|YP_001098063.1| - 6.3e-14 52.7 0.0 2.1e-13 51.0 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily BATS PF06968.13 gi|134046578|ref|YP_001098063.1| - 8.8e-09 35.4 0.0 2.6e-08 33.9 0.0 1.8 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain VP_N-CPKC PF11475.8 gi|134046578|ref|YP_001098063.1| - 1 9.3 3.2 0.4 10.6 0.5 1.7 2 0 0 2 2 2 0 Virion protein N terminal domain Fibrillarin_2 PF10113.9 gi|134046579|ref|YP_001098064.1| - 1.4e-224 746.4 0.3 1.6e-224 746.2 0.3 1.0 1 0 0 1 1 1 1 Fibrillarin-like archaeal protein Oxidored_q6 PF01058.22 gi|134046579|ref|YP_001098064.1| - 0.13 12.1 0.1 0.33 10.8 0.1 1.8 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase, 20 Kd subunit YdjM PF04307.14 gi|134046580|ref|YP_001098065.1| - 1.7e-21 76.3 0.0 5.6e-21 74.6 0.0 1.8 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|134046580|ref|YP_001098065.1| - 0.073 13.1 0.3 1.3 9.0 0.3 2.2 1 1 0 1 1 1 0 Zinc dependent phospholipase C ATP-grasp PF02222.22 gi|134046581|ref|YP_001098066.1| - 7.2e-61 204.7 0.0 1.1e-60 204.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|134046581|ref|YP_001098066.1| - 3.8e-08 33.1 0.0 9.7e-08 31.8 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|134046581|ref|YP_001098066.1| - 8.9e-07 28.6 0.0 1.6e-06 27.8 0.0 1.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|134046581|ref|YP_001098066.1| - 1.2e-05 25.4 0.0 3.7e-05 23.8 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|134046581|ref|YP_001098066.1| - 2.3e-05 24.3 0.1 0.00018 21.4 0.0 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Epimerase PF01370.21 gi|134046581|ref|YP_001098066.1| - 0.00013 21.5 0.0 0.00025 20.6 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|134046581|ref|YP_001098066.1| - 0.00037 19.9 0.1 0.0013 18.2 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATPgrasp_ST PF14397.6 gi|134046581|ref|YP_001098066.1| - 0.016 14.5 0.2 0.16 11.2 0.1 2.3 2 1 0 2 2 2 0 Sugar-transfer associated ATP-grasp LAL_C2 PF18603.1 gi|134046581|ref|YP_001098066.1| - 0.022 14.9 0.5 0.093 12.9 0.1 2.2 2 0 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 RmlD_sub_bind PF04321.17 gi|134046581|ref|YP_001098066.1| - 0.064 12.4 0.0 0.12 11.5 0.0 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain ATP-grasp_4 PF13535.6 gi|134046581|ref|YP_001098066.1| - 0.079 12.5 0.1 0.31 10.6 0.1 2.2 1 1 0 1 1 1 0 ATP-grasp domain PurK_C PF17769.1 gi|134046581|ref|YP_001098066.1| - 0.12 12.0 0.0 0.34 10.6 0.0 1.8 1 0 0 1 1 1 0 Phosphoribosylaminoimidazole carboxylase C-terminal domain tRNA_anti-codon PF01336.25 gi|134046582|ref|YP_001098067.1| - 0.00019 21.3 0.1 0.043 13.8 0.0 2.8 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|134046582|ref|YP_001098067.1| - 0.00068 19.4 1.4 0.0056 16.4 1.4 2.1 1 1 0 1 1 1 1 Cell division control protein 24, OB domain 3 DUF4888 PF16229.5 gi|134046582|ref|YP_001098067.1| - 0.29 11.1 3.1 15 5.5 0.1 3.1 2 1 0 3 3 3 0 Domain of unknown function (DUF4888) Stn1 PF10451.9 gi|134046583|ref|YP_001098068.1| - 0.0061 15.6 0.1 0.0068 15.4 0.1 1.2 1 0 0 1 1 1 1 Telomere regulation protein Stn1 S-layer PF07752.11 gi|134046583|ref|YP_001098068.1| - 0.0072 15.4 0.2 0.0093 15.0 0.2 1.1 1 0 0 1 1 1 1 S-layer protein tRNA_anti-codon PF01336.25 gi|134046583|ref|YP_001098068.1| - 0.086 12.8 0.2 0.15 12.0 0.2 1.4 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|134046583|ref|YP_001098068.1| - 0.11 12.1 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 3 tRNA_anti-codon PF01336.25 gi|134046584|ref|YP_001098069.1| - 4.2e-09 36.3 0.5 6.9e-09 35.6 0.3 1.5 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain RMI2 PF16100.5 gi|134046584|ref|YP_001098069.1| - 7.7e-06 25.8 0.0 9.2e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 SSB PF00436.25 gi|134046584|ref|YP_001098069.1| - 0.024 14.7 0.1 0.049 13.7 0.0 1.6 1 1 0 1 1 1 0 Single-strand binding protein family tRNA_anti_2 PF13742.6 gi|134046584|ref|YP_001098069.1| - 0.1 12.8 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|134046584|ref|YP_001098069.1| - 0.12 12.1 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 3 BPL_LplA_LipB PF03099.19 gi|134046585|ref|YP_001098070.1| - 2.2e-13 50.3 0.1 3.5e-13 49.6 0.1 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Fib_alpha PF08702.10 gi|134046585|ref|YP_001098070.1| - 0.14 12.3 0.4 0.24 11.6 0.4 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Lactamase_B PF00753.27 gi|134046586|ref|YP_001098071.1| - 7.2e-24 84.9 0.5 8.6e-24 84.6 0.5 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|134046586|ref|YP_001098071.1| - 1.7e-06 27.7 0.0 2.1e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|134046586|ref|YP_001098071.1| - 0.00058 19.8 0.1 0.00079 19.4 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|134046586|ref|YP_001098071.1| - 0.0057 16.1 0.0 0.0095 15.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain CofC PF01983.16 gi|134046587|ref|YP_001098072.1| - 3e-67 226.0 1.0 3.4e-67 225.8 1.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|134046587|ref|YP_001098072.1| - 7.6e-09 36.1 0.0 1.1e-07 32.3 0.0 2.0 2 0 0 2 2 2 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.26 gi|134046587|ref|YP_001098072.1| - 0.052 13.4 0.0 0.099 12.4 0.0 1.6 1 1 1 2 2 2 0 Glycosyl transferase family 2 Semialdhyde_dh PF01118.24 gi|134046588|ref|YP_001098073.1| - 7e-38 129.8 0.0 1.1e-37 129.1 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|134046588|ref|YP_001098073.1| - 7.5e-28 97.9 0.0 1.1e-27 97.3 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Sacchrp_dh_NADP PF03435.18 gi|134046588|ref|YP_001098073.1| - 0.00085 19.6 0.0 0.0017 18.7 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 gi|134046588|ref|YP_001098073.1| - 0.0016 17.9 0.0 0.0023 17.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GFO_IDH_MocA PF01408.22 gi|134046588|ref|YP_001098073.1| - 0.013 16.3 0.0 0.036 14.9 0.0 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|134046588|ref|YP_001098073.1| - 0.021 14.9 0.0 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Nitroreductase PF00881.24 gi|134046589|ref|YP_001098074.1| - 5.1e-24 85.2 0.1 8.8e-14 51.9 0.0 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|134046589|ref|YP_001098074.1| - 1.6e-12 47.5 0.2 0.00023 20.8 0.0 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase AP_endonuc_2 PF01261.24 gi|134046590|ref|YP_001098075.1| - 1.9e-07 30.8 0.0 2.6e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Trans_reg_C PF00486.28 gi|134046590|ref|YP_001098075.1| - 0.079 13.1 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal PhosphMutase PF10143.9 gi|134046592|ref|YP_001098077.1| - 2.5e-40 138.1 0.0 6.5e-40 136.8 0.0 1.6 2 0 0 2 2 2 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|134046592|ref|YP_001098077.1| - 3.8e-36 124.7 0.0 4.6e-36 124.5 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|134046592|ref|YP_001098077.1| - 0.00023 20.3 0.0 0.00033 19.7 0.0 1.2 1 0 0 1 1 1 1 Alkaline phosphatase Phosphodiest PF01663.22 gi|134046592|ref|YP_001098077.1| - 0.0022 17.6 0.0 0.016 14.8 0.0 2.0 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Zn_dep_PLPC PF00882.18 gi|134046593|ref|YP_001098078.1| - 0.0024 17.9 0.3 0.004 17.2 0.2 1.4 1 1 0 1 1 1 1 Zinc dependent phospholipase C DUF3114 PF11311.8 gi|134046593|ref|YP_001098078.1| - 0.036 13.6 4.4 0.046 13.3 4.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3114) ABC_tran PF00005.27 gi|134046594|ref|YP_001098079.1| - 2.7e-30 105.7 0.0 4.7e-30 104.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|134046594|ref|YP_001098079.1| - 3.5e-08 33.5 0.0 5.9e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|134046594|ref|YP_001098079.1| - 1.4e-05 25.1 0.1 0.0073 16.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|134046594|ref|YP_001098079.1| - 0.0013 18.7 0.1 0.005 16.8 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase Rad17 PF03215.15 gi|134046594|ref|YP_001098079.1| - 0.0065 16.4 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 gi|134046594|ref|YP_001098079.1| - 0.0099 15.3 1.0 0.17 11.3 0.6 2.4 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|134046594|ref|YP_001098079.1| - 0.029 14.6 0.1 0.072 13.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|134046594|ref|YP_001098079.1| - 0.035 14.5 0.0 0.046 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Nuc_rec_co-act PF08815.10 gi|134046594|ref|YP_001098079.1| - 0.063 13.1 0.2 0.25 11.2 0.1 2.0 2 0 0 2 2 2 0 Nuclear receptor coactivator BPD_transp_1 PF00528.22 gi|134046595|ref|YP_001098080.1| - 4.4e-19 68.9 38.7 6.8e-13 48.8 13.2 4.1 1 1 3 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.6 gi|134046596|ref|YP_001098081.1| - 1e-28 100.4 0.0 1.3e-28 100.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|134046596|ref|YP_001098081.1| - 4.1e-24 85.9 0.0 5.5e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|134046596|ref|YP_001098081.1| - 1.6e-19 71.0 0.2 2.4e-19 70.4 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|134046596|ref|YP_001098081.1| - 3.6e-16 59.6 0.0 6.6e-16 58.8 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein ECF_trnsprt PF12822.7 gi|134046597|ref|YP_001098082.1| - 0.00099 19.2 32.8 0.0022 18.1 32.8 1.6 1 1 0 1 1 1 1 ECF transporter, substrate-specific component DUF1211 PF06736.11 gi|134046597|ref|YP_001098082.1| - 0.051 14.0 0.2 0.051 14.0 0.2 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1211) 5TM-5TMR_LYT PF07694.12 gi|134046597|ref|YP_001098082.1| - 2.1 7.8 25.3 0.24 10.9 19.0 2.0 1 1 1 2 2 2 0 5TMR of 5TMR-LYT Fer4 PF00037.27 gi|134046598|ref|YP_001098083.1| - 1.7e-31 106.7 64.0 3.1e-07 29.9 1.0 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134046598|ref|YP_001098083.1| - 2.1e-22 79.5 48.1 5.6e-07 30.0 11.0 5.0 2 1 3 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134046598|ref|YP_001098083.1| - 6.2e-19 67.9 49.1 1.5e-06 28.3 12.2 4.8 2 1 4 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134046598|ref|YP_001098083.1| - 1.6e-17 63.3 58.6 1.2e-07 31.7 12.3 4.7 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134046598|ref|YP_001098083.1| - 2.7e-17 63.4 53.7 4.8e-05 24.2 5.2 6.0 3 2 3 6 6 6 5 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|134046598|ref|YP_001098083.1| - 1.4e-15 56.4 55.0 0.00018 21.4 1.2 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134046598|ref|YP_001098083.1| - 3e-15 55.5 67.4 2.3e-05 24.3 1.6 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134046598|ref|YP_001098083.1| - 1.1e-14 54.3 57.5 1.9e-05 24.7 13.1 4.4 3 2 1 4 4 4 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134046598|ref|YP_001098083.1| - 1.7e-13 50.8 47.8 0.0048 17.3 0.4 6.1 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134046598|ref|YP_001098083.1| - 6.2e-11 42.7 51.3 0.00085 19.8 0.4 6.1 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134046598|ref|YP_001098083.1| - 1.4e-10 40.8 59.2 0.00097 19.5 1.3 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_3 PF12798.7 gi|134046598|ref|YP_001098083.1| - 3.2e-09 37.1 70.4 0.033 15.1 7.6 6.2 6 0 0 6 6 6 5 4Fe-4S binding domain Fer4_18 PF13746.6 gi|134046598|ref|YP_001098083.1| - 0.0001 22.5 49.0 0.00058 20.0 11.8 4.7 1 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|134046598|ref|YP_001098083.1| - 0.0042 17.6 57.4 0.99 10.0 1.3 6.3 5 1 1 6 6 6 5 4Fe-4S single cluster domain of Ferredoxin I SOR_SNZ PF01680.17 gi|134046599|ref|YP_001098084.1| - 5.7e-101 336.5 11.1 8.3e-101 336.0 11.1 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|134046599|ref|YP_001098084.1| - 2.1e-09 37.1 6.6 1.7e-06 27.5 0.5 2.4 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|134046599|ref|YP_001098084.1| - 2.7e-07 30.0 1.3 0.0021 17.2 0.0 2.2 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|134046599|ref|YP_001098084.1| - 0.00027 20.2 1.3 0.055 12.6 0.0 2.6 2 1 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|134046599|ref|YP_001098084.1| - 0.001 18.6 2.4 0.001 18.6 2.4 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase His_biosynth PF00977.21 gi|134046599|ref|YP_001098084.1| - 0.0021 17.5 1.7 0.11 11.9 0.0 2.9 2 1 0 2 2 2 1 Histidine biosynthesis protein IGPS PF00218.21 gi|134046599|ref|YP_001098084.1| - 0.0035 16.5 0.3 0.077 12.1 0.0 2.4 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase IMPDH PF00478.25 gi|134046599|ref|YP_001098084.1| - 0.0048 15.9 0.5 0.0077 15.3 0.4 1.5 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain OMPdecase PF00215.24 gi|134046599|ref|YP_001098084.1| - 0.033 13.8 0.2 1.1 8.8 0.0 2.4 1 1 1 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family PCMT PF01135.19 gi|134046600|ref|YP_001098085.1| - 7.2e-72 241.5 0.1 8.6e-72 241.3 0.1 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|134046600|ref|YP_001098085.1| - 1.5e-09 37.8 0.0 2.2e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|134046600|ref|YP_001098085.1| - 6.7e-06 25.6 0.0 1.9e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|134046600|ref|YP_001098085.1| - 1e-05 26.1 0.1 2.5e-05 24.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.20 gi|134046600|ref|YP_001098085.1| - 7e-05 22.0 0.0 0.00011 21.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.17 gi|134046600|ref|YP_001098085.1| - 0.00016 20.9 0.0 0.00023 20.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Fibrillarin PF01269.17 gi|134046600|ref|YP_001098085.1| - 0.00017 20.8 0.0 0.00024 20.3 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin Methyltransf_11 PF08241.12 gi|134046600|ref|YP_001098085.1| - 0.0041 17.7 0.1 0.014 16.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|134046600|ref|YP_001098085.1| - 0.0051 16.5 0.0 0.0076 15.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F GidB PF02527.15 gi|134046600|ref|YP_001098085.1| - 0.006 15.9 0.0 0.008 15.5 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G GCD14 PF08704.10 gi|134046600|ref|YP_001098085.1| - 0.0088 15.7 0.1 0.012 15.3 0.1 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_32 PF13679.6 gi|134046600|ref|YP_001098085.1| - 0.039 14.0 0.0 0.056 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|134046600|ref|YP_001098085.1| - 0.049 13.5 0.0 0.083 12.7 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|134046600|ref|YP_001098085.1| - 0.051 12.9 0.0 0.074 12.3 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF938 PF06080.12 gi|134046600|ref|YP_001098085.1| - 0.081 12.7 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) MTS PF05175.14 gi|134046600|ref|YP_001098085.1| - 0.14 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain CBS PF00571.28 gi|134046601|ref|YP_001098086.1| - 5.7e-14 52.3 0.4 1.7e-07 31.6 0.1 2.3 2 0 0 2 2 2 2 CBS domain PcrB PF01884.17 gi|134046601|ref|YP_001098086.1| - 0.067 12.6 0.1 0.1 12.0 0.0 1.5 1 1 0 1 1 1 0 PcrB family Na_H_Exchanger PF00999.21 gi|134046602|ref|YP_001098087.1| - 2.4e-51 174.7 46.2 3e-51 174.4 46.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MFS_1 PF07690.16 gi|134046603|ref|YP_001098088.1| - 5.7e-51 173.5 49.2 1.3e-39 136.2 36.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|134046603|ref|YP_001098088.1| - 7.9e-13 47.6 15.7 1e-12 47.3 15.7 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.24 gi|134046603|ref|YP_001098088.1| - 7.2e-09 35.0 11.2 7.2e-09 35.0 11.2 3.1 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|134046603|ref|YP_001098088.1| - 2.7e-08 33.1 33.9 2.8e-07 29.7 15.5 2.1 1 1 0 2 2 2 2 MFS_1 like family OATP PF03137.20 gi|134046603|ref|YP_001098088.1| - 0.00021 19.8 20.8 0.013 13.9 2.6 3.2 2 1 1 3 3 3 3 Organic Anion Transporter Polypeptide (OATP) family Pmp3 PF01679.17 gi|134046603|ref|YP_001098088.1| - 0.45 10.8 5.4 1.5 9.1 0.0 3.4 2 1 1 3 3 3 0 Proteolipid membrane potential modulator Fer4 PF00037.27 gi|134046604|ref|YP_001098089.1| - 7.5e-16 57.2 24.4 1.3e-08 34.3 5.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134046604|ref|YP_001098089.1| - 1.6e-11 43.8 23.0 2.2e-06 27.5 9.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|134046604|ref|YP_001098089.1| - 4.5e-11 42.7 30.6 5.6e-08 32.8 16.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134046604|ref|YP_001098089.1| - 4.7e-11 42.1 15.1 9.3e-06 25.4 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134046604|ref|YP_001098089.1| - 2.1e-10 40.5 16.0 2.5e-10 40.3 16.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134046604|ref|YP_001098089.1| - 5.5e-10 39.7 16.1 8.3e-10 39.1 16.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134046604|ref|YP_001098089.1| - 1.4e-09 38.0 15.5 1.7e-09 37.7 15.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134046604|ref|YP_001098089.1| - 5.7e-09 36.8 17.3 1.6e-05 25.8 2.7 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|134046604|ref|YP_001098089.1| - 1.2e-07 31.6 16.2 0.00034 20.9 2.6 2.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|134046604|ref|YP_001098089.1| - 3.3e-06 27.7 17.4 0.0086 17.0 6.9 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|134046604|ref|YP_001098089.1| - 8e-05 23.1 14.8 0.0032 18.0 2.0 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134046604|ref|YP_001098089.1| - 0.00014 22.2 16.0 0.015 15.7 3.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134046604|ref|YP_001098089.1| - 0.00015 22.5 18.2 0.00018 22.2 1.5 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|134046604|ref|YP_001098089.1| - 0.00018 21.9 20.4 0.071 13.7 20.4 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|134046604|ref|YP_001098089.1| - 0.0094 16.8 13.8 0.071 14.0 3.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|134046604|ref|YP_001098089.1| - 0.064 13.5 14.9 1 9.6 13.3 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain SCIFF PF13165.6 gi|134046604|ref|YP_001098089.1| - 0.13 12.2 9.6 0.27 11.2 2.0 2.1 2 0 0 2 2 2 0 Six-cysteine peptide SCIFF HTH_3 PF01381.22 gi|134046605|ref|YP_001098090.1| - 1.8e-13 50.3 0.1 3.3e-13 49.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix Cupin_2 PF07883.11 gi|134046605|ref|YP_001098090.1| - 3.7e-09 36.2 0.0 5.8e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.7 gi|134046605|ref|YP_001098090.1| - 5.2e-07 29.6 0.2 1.3e-06 28.3 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|134046605|ref|YP_001098090.1| - 2.2e-06 27.9 0.0 3e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|134046605|ref|YP_001098090.1| - 0.00013 21.7 0.0 0.00021 21.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MannoseP_isomer PF01050.18 gi|134046605|ref|YP_001098090.1| - 0.0015 18.4 0.0 0.0023 17.8 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_7 PF12973.7 gi|134046605|ref|YP_001098090.1| - 0.015 15.2 0.0 0.032 14.2 0.0 1.6 2 0 0 2 2 2 0 ChrR Cupin-like domain HTH_26 PF13443.6 gi|134046605|ref|YP_001098090.1| - 0.021 15.3 0.1 0.033 14.6 0.1 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain AraC_binding PF02311.19 gi|134046605|ref|YP_001098090.1| - 0.16 11.9 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain Aminotran_1_2 PF00155.21 gi|134046606|ref|YP_001098091.1| - 1e-36 126.9 0.0 1.3e-36 126.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|134046606|ref|YP_001098091.1| - 6.2e-05 22.0 0.0 0.00011 21.1 0.0 1.3 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase PHP_C PF13263.6 gi|134046607|ref|YP_001098092.1| - 0.035 13.9 0.0 0.071 12.9 0.0 1.6 1 0 0 1 1 1 0 PHP-associated FAM76 PF16046.5 gi|134046607|ref|YP_001098092.1| - 0.085 12.2 0.5 0.14 11.5 0.5 1.3 1 0 0 1 1 1 0 FAM76 protein HypA PF01155.19 gi|134046607|ref|YP_001098092.1| - 0.097 12.7 0.1 0.2 11.7 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_3 PF13920.6 gi|134046607|ref|YP_001098092.1| - 0.11 12.3 0.3 0.19 11.6 0.3 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TF_Zn_Ribbon PF08271.12 gi|134046607|ref|YP_001098092.1| - 0.2 11.2 2.4 0.38 10.3 2.4 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding THUMP PF02926.17 gi|134046608|ref|YP_001098093.1| - 5e-11 42.9 1.8 5e-11 42.9 1.8 2.6 2 1 0 2 2 2 1 THUMP domain Ribosomal_L21e PF01157.18 gi|134046609|ref|YP_001098094.1| - 1.2e-37 127.8 1.3 1.3e-37 127.6 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|134046610|ref|YP_001098095.1| - 1.2e-05 25.6 0.5 1.9e-05 25.0 0.4 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb4 Atg31 PF09795.9 gi|134046610|ref|YP_001098095.1| - 0.018 15.0 1.3 0.043 13.8 0.2 1.8 1 1 0 2 2 2 0 Autophagy-related protein 31 CARD PF00619.21 gi|134046610|ref|YP_001098095.1| - 0.12 12.5 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Caspase recruitment domain DUF655 PF04919.12 gi|134046611|ref|YP_001098096.1| - 3e-60 203.2 2.9 3.5e-60 203.0 2.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|134046611|ref|YP_001098096.1| - 0.0031 17.7 0.0 0.0064 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif BAR PF03114.18 gi|134046611|ref|YP_001098096.1| - 0.016 14.8 1.0 0.053 13.2 0.1 1.9 1 1 0 2 2 2 0 BAR domain Retrotrans_gag PF03732.17 gi|134046611|ref|YP_001098096.1| - 0.083 13.2 0.1 0.24 11.7 0.1 1.8 2 0 0 2 2 2 0 Retrotransposon gag protein Ribosomal_S13 PF00416.22 gi|134046611|ref|YP_001098096.1| - 0.089 13.2 0.1 0.21 12.0 0.0 1.6 2 0 0 2 2 2 0 Ribosomal protein S13/S18 Glycos_transf_1 PF00534.20 gi|134046612|ref|YP_001098097.1| - 5.5e-35 120.4 0.1 1.1e-34 119.5 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|134046612|ref|YP_001098097.1| - 2.8e-27 95.8 0.0 5.7e-27 94.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|134046612|ref|YP_001098097.1| - 1.7e-25 90.0 0.0 2.7e-25 89.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|134046612|ref|YP_001098097.1| - 1.8e-15 57.2 0.1 3.5e-15 56.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|134046612|ref|YP_001098097.1| - 2.8e-07 30.8 0.0 5.6e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|134046612|ref|YP_001098097.1| - 1.5e-05 25.5 0.0 1.8e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain PIGA PF08288.12 gi|134046612|ref|YP_001098097.1| - 0.013 16.1 0.0 0.036 14.7 0.0 1.7 2 0 0 2 2 2 0 PIGA (GPI anchor biosynthesis) DUF3492 PF11997.8 gi|134046612|ref|YP_001098097.1| - 0.025 14.3 0.0 3.1 7.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3492) NAD_binding_7 PF13241.6 gi|134046613|ref|YP_001098098.1| - 1.3e-18 67.3 0.1 4.6e-18 65.6 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|134046613|ref|YP_001098098.1| - 9.8e-05 22.6 0.2 0.00029 21.1 0.0 1.9 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|134046613|ref|YP_001098098.1| - 0.00026 21.1 0.0 0.00055 20.0 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sirohm_synth_M PF14824.6 gi|134046613|ref|YP_001098098.1| - 0.00054 19.4 0.0 0.0028 17.1 0.0 2.1 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central NAD_binding_10 PF13460.6 gi|134046613|ref|YP_001098098.1| - 0.00092 19.1 0.0 0.0013 18.7 0.0 1.4 1 1 0 1 1 1 1 NAD(P)H-binding 2-Hacid_dh_C PF02826.19 gi|134046613|ref|YP_001098098.1| - 0.0028 17.0 0.0 0.0054 16.1 0.0 1.5 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|134046613|ref|YP_001098098.1| - 0.0028 17.0 0.0 0.0064 15.8 0.0 1.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|134046613|ref|YP_001098098.1| - 0.016 15.5 0.0 0.029 14.6 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain IlvN PF07991.12 gi|134046613|ref|YP_001098098.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DUF3231 PF11553.8 gi|134046613|ref|YP_001098098.1| - 0.45 10.1 4.3 2.2 7.9 1.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3231) Shikimate_DH PF01488.20 gi|134046614|ref|YP_001098099.1| - 2.4e-42 144.3 1.7 2.4e-42 144.3 1.7 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|134046614|ref|YP_001098099.1| - 4.8e-32 110.7 0.0 1.7e-31 109.0 0.0 1.9 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|134046614|ref|YP_001098099.1| - 2.4e-11 43.9 4.0 6e-11 42.7 2.6 2.4 3 0 0 3 3 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|134046614|ref|YP_001098099.1| - 5.1e-10 39.8 0.6 1.4e-09 38.4 0.6 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|134046614|ref|YP_001098099.1| - 9.7e-06 25.8 0.4 3.1e-05 24.2 0.1 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|134046614|ref|YP_001098099.1| - 3.2e-05 23.4 0.2 5.3e-05 22.6 0.2 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|134046614|ref|YP_001098099.1| - 5.9e-05 23.5 0.1 0.00016 22.1 0.1 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding OCD_Mu_crystall PF02423.15 gi|134046614|ref|YP_001098099.1| - 0.00015 20.8 0.1 0.00028 19.9 0.1 1.4 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family TrkA_N PF02254.18 gi|134046614|ref|YP_001098099.1| - 0.00062 20.0 0.2 0.0017 18.6 0.2 1.8 1 0 0 1 1 1 1 TrkA-N domain Glu_dehyd_C PF16912.5 gi|134046614|ref|YP_001098099.1| - 0.00099 18.6 0.1 0.0018 17.8 0.1 1.4 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Sacchrp_dh_NADP PF03435.18 gi|134046614|ref|YP_001098099.1| - 0.0015 18.8 0.9 0.0036 17.6 0.2 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|134046614|ref|YP_001098099.1| - 0.0026 18.6 0.1 0.0059 17.4 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold COQ7 PF03232.13 gi|134046614|ref|YP_001098099.1| - 0.016 15.0 1.0 0.046 13.5 1.0 1.8 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 IlvN PF07991.12 gi|134046614|ref|YP_001098099.1| - 0.033 13.8 0.1 0.063 12.8 0.1 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|134046614|ref|YP_001098099.1| - 0.05 13.3 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|134046614|ref|YP_001098099.1| - 0.056 13.3 0.9 0.33 10.8 0.1 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 gi|134046614|ref|YP_001098099.1| - 0.074 12.9 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H-binding Gp_dh_N PF00044.24 gi|134046614|ref|YP_001098099.1| - 0.15 12.5 3.6 0.17 12.3 0.2 2.3 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LpxI_N PF17930.1 gi|134046614|ref|YP_001098099.1| - 0.22 11.4 1.6 7.4 6.5 0.1 2.4 2 0 0 2 2 2 0 LpxI N-terminal domain DUF4795 PF16043.5 gi|134046614|ref|YP_001098099.1| - 1.3 8.6 6.7 0.56 9.8 4.3 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) APG17 PF04108.12 gi|134046614|ref|YP_001098099.1| - 1.4 7.9 8.9 2.8 6.9 8.9 1.4 1 1 0 1 1 1 0 Autophagy protein Apg17 HMG-CoA_red PF00368.18 gi|134046615|ref|YP_001098100.1| - 1.2e-131 439.1 4.6 1.4e-131 438.9 4.6 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase TFX_C PF14601.6 gi|134046616|ref|YP_001098101.1| - 1.7e-27 95.2 0.4 2.6e-27 94.6 0.4 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|134046616|ref|YP_001098101.1| - 1.9e-07 30.5 0.2 3.2e-07 29.8 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.7 gi|134046616|ref|YP_001098101.1| - 8.1e-05 22.6 0.5 0.00019 21.4 0.5 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|134046616|ref|YP_001098101.1| - 0.0051 16.9 0.0 0.0093 16.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|134046616|ref|YP_001098101.1| - 0.0057 16.7 0.1 0.011 15.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix DUF915 PF06028.11 gi|134046616|ref|YP_001098101.1| - 0.0071 15.7 0.2 0.0085 15.5 0.2 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF915) HTH_38 PF13936.6 gi|134046616|ref|YP_001098101.1| - 0.023 14.5 0.8 0.034 13.9 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3536 PF12055.8 gi|134046616|ref|YP_001098101.1| - 0.036 13.4 0.1 0.045 13.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3536) Phage_portal PF04860.12 gi|134046616|ref|YP_001098101.1| - 0.039 13.1 0.4 0.061 12.5 0.4 1.3 1 1 0 1 1 1 0 Phage portal protein HTH_37 PF13744.6 gi|134046616|ref|YP_001098101.1| - 0.042 13.8 0.1 0.079 12.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RepB PF07506.11 gi|134046616|ref|YP_001098101.1| - 0.042 13.9 0.1 0.066 13.3 0.1 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein UPF0122 PF04297.14 gi|134046616|ref|YP_001098101.1| - 0.05 13.8 0.0 0.084 13.1 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_Crp_2 PF13545.6 gi|134046616|ref|YP_001098101.1| - 0.079 12.9 0.1 0.16 12.0 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain eRF1_1 PF03463.15 gi|134046617|ref|YP_001098102.1| - 2.5e-27 95.4 0.1 3.8e-27 94.8 0.1 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|134046617|ref|YP_001098102.1| - 8.4e-25 87.4 0.5 3.2e-24 85.6 0.1 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|134046617|ref|YP_001098102.1| - 2.5e-06 27.8 0.1 8.3e-06 26.2 0.1 1.9 1 1 0 1 1 1 1 eRF1 domain 2 DUF3334 PF11813.8 gi|134046618|ref|YP_001098103.1| - 0.011 15.5 0.2 0.014 15.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3334) TFIID_NTD2 PF04494.15 gi|134046618|ref|YP_001098103.1| - 0.02 15.1 0.5 0.047 13.9 0.5 1.7 1 0 0 1 1 1 0 WD40 associated region in TFIID subunit, NTD2 domain DUF2975 PF11188.8 gi|134046618|ref|YP_001098103.1| - 0.041 13.8 2.0 0.071 13.0 2.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) UPF0122 PF04297.14 gi|134046619|ref|YP_001098104.1| - 0.015 15.5 0.6 0.021 15.1 0.6 1.2 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like dCache_3 PF14827.6 gi|134046619|ref|YP_001098104.1| - 0.052 13.2 0.1 0.067 12.8 0.1 1.2 1 0 0 1 1 1 0 Double sensory domain of two-component sensor kinase Ribosomal_L12_N PF16320.5 gi|134046619|ref|YP_001098104.1| - 0.055 13.2 0.5 3.4 7.5 0.1 2.3 2 0 0 2 2 2 0 Ribosomal protein L7/L12 dimerisation domain VMA21 PF09446.10 gi|134046619|ref|YP_001098104.1| - 0.13 12.4 0.7 0.17 12.0 0.7 1.4 1 1 0 1 1 1 0 VMA21-like domain MCPsignal PF00015.21 gi|134046620|ref|YP_001098105.1| - 2.4e-33 115.4 49.5 9.5e-31 106.9 17.1 5.1 1 1 4 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain sCache_3_3 PF17202.4 gi|134046620|ref|YP_001098105.1| - 1.6e-28 99.2 1.6 1.6e-28 99.2 1.6 3.0 4 0 0 4 4 3 1 Single cache domain 3 Cache_3-Cache_2 PF17201.4 gi|134046620|ref|YP_001098105.1| - 2.4e-14 53.3 4.3 2.4e-14 53.3 4.3 3.6 1 1 0 3 3 3 1 Cache 3/Cache 2 fusion domain HAMP PF00672.25 gi|134046620|ref|YP_001098105.1| - 7.3e-14 51.9 3.4 5.2e-09 36.3 0.0 4.8 6 0 0 6 6 2 2 HAMP domain DUF948 PF06103.11 gi|134046620|ref|YP_001098105.1| - 1.9e-07 31.2 39.8 0.011 16.0 1.5 6.9 1 1 4 5 5 5 3 Bacterial protein of unknown function (DUF948) Prominin PF05478.11 gi|134046620|ref|YP_001098105.1| - 4.7e-07 28.2 19.1 5e-06 24.8 12.6 2.2 1 1 0 2 2 2 2 Prominin dCache_3 PF14827.6 gi|134046620|ref|YP_001098105.1| - 1.2e-06 28.4 0.0 1.2e-06 28.4 0.0 2.9 3 1 0 3 3 2 1 Double sensory domain of two-component sensor kinase DUF1664 PF07889.12 gi|134046620|ref|YP_001098105.1| - 3.8e-06 26.9 30.2 0.1 12.6 0.3 5.6 3 1 0 4 4 4 2 Protein of unknown function (DUF1664) DUF885 PF05960.11 gi|134046620|ref|YP_001098105.1| - 2e-05 24.5 6.7 0.016 14.9 1.0 2.4 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF885) sCache_3_2 PF17203.4 gi|134046620|ref|YP_001098105.1| - 0.00016 21.8 0.1 0.00016 21.8 0.1 3.6 3 1 1 4 4 3 1 Single cache domain 3 BLOC1_2 PF10046.9 gi|134046620|ref|YP_001098105.1| - 0.00043 20.5 27.7 0.15 12.3 0.6 5.5 3 2 1 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fib_alpha PF08702.10 gi|134046620|ref|YP_001098105.1| - 0.0015 18.8 28.0 0.012 15.8 9.3 4.7 1 1 4 5 5 5 1 Fibrinogen alpha/beta chain family Syntaxin-6_N PF09177.11 gi|134046620|ref|YP_001098105.1| - 0.0017 18.8 26.2 2.4 8.8 0.9 4.8 1 1 2 3 3 3 1 Syntaxin 6, N-terminal Collagen_mid PF15984.5 gi|134046620|ref|YP_001098105.1| - 0.0023 17.7 9.8 0.0096 15.7 0.1 3.3 3 1 1 4 4 2 1 Bacterial collagen, middle region SpecificRecomb PF10136.9 gi|134046620|ref|YP_001098105.1| - 0.049 11.9 4.9 0.09 11.1 4.9 1.4 1 0 0 1 1 1 0 Site-specific recombinase GARP PF16731.5 gi|134046620|ref|YP_001098105.1| - 0.056 13.1 36.3 0.56 9.9 4.6 4.1 1 1 2 3 3 3 0 Glutamic acid/alanine-rich protein of Trypanosoma Spectrin PF00435.21 gi|134046620|ref|YP_001098105.1| - 0.063 13.8 18.1 1.2 9.6 6.8 4.7 4 1 1 5 5 5 0 Spectrin repeat WXG100 PF06013.12 gi|134046620|ref|YP_001098105.1| - 0.066 13.5 20.0 31 4.9 6.9 6.1 5 1 2 7 7 6 0 Proteins of 100 residues with WXG DUF2959 PF11172.8 gi|134046620|ref|YP_001098105.1| - 0.069 13.3 26.9 1.4 9.0 14.3 4.5 2 1 2 4 4 4 0 Protein of unknown function (DUF2959) IFT57 PF10498.9 gi|134046620|ref|YP_001098105.1| - 0.092 11.7 27.7 0.35 9.8 9.7 4.6 2 1 2 5 5 5 0 Intra-flagellar transport protein 57 DUF2518 PF10726.9 gi|134046620|ref|YP_001098105.1| - 0.12 12.1 0.1 0.36 10.5 0.1 1.8 1 0 0 1 1 1 0 Protein of function (DUF2518) Laminin_I PF06008.14 gi|134046620|ref|YP_001098105.1| - 0.15 11.8 35.3 1.1 8.9 0.6 4.0 2 1 1 3 3 3 0 Laminin Domain I YscO PF07321.12 gi|134046620|ref|YP_001098105.1| - 0.15 12.0 18.4 2.2 8.2 14.0 2.7 2 0 0 2 2 2 0 Type III secretion protein YscO DUF1043 PF06295.12 gi|134046620|ref|YP_001098105.1| - 0.21 11.6 11.9 2.5 8.1 0.5 3.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) DUF2779 PF11074.8 gi|134046620|ref|YP_001098105.1| - 0.24 11.9 3.5 7.5 7.0 0.1 3.0 1 1 2 3 3 3 0 Domain of unknown function(DUF2779) Med30 PF11315.8 gi|134046620|ref|YP_001098105.1| - 0.26 11.5 15.2 0.18 12.0 1.5 3.8 3 1 1 4 4 3 0 Mediator complex subunit 30 Rrn6 PF10214.9 gi|134046620|ref|YP_001098105.1| - 0.33 9.4 6.1 0.5 8.8 6.1 1.2 1 0 0 1 1 1 0 RNA polymerase I-specific transcription-initiation factor HSBP1 PF06825.12 gi|134046620|ref|YP_001098105.1| - 0.36 10.7 4.5 0.48 10.3 0.1 3.5 3 0 0 3 3 3 0 Heat shock factor binding protein 1 Sec34 PF04136.15 gi|134046620|ref|YP_001098105.1| - 0.4 10.6 18.2 5.1 7.0 0.2 4.5 4 1 1 5 5 4 0 Sec34-like family RasGAP_C PF03836.15 gi|134046620|ref|YP_001098105.1| - 0.46 10.6 11.0 0.67 10.1 7.3 3.0 1 1 2 3 3 3 0 RasGAP C-terminus Glu-tRNAGln PF02686.15 gi|134046620|ref|YP_001098105.1| - 0.66 10.3 11.6 0.91 9.9 2.8 4.0 3 1 1 4 4 2 0 Glu-tRNAGln amidotransferase C subunit DUF3549 PF12069.8 gi|134046620|ref|YP_001098105.1| - 0.76 8.8 9.2 1.3 8.0 4.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3549) DUF4201 PF13870.6 gi|134046620|ref|YP_001098105.1| - 0.82 9.4 17.6 1.4 8.6 8.0 3.4 4 0 0 4 4 4 0 Domain of unknown function (DUF4201) DUF3450 PF11932.8 gi|134046620|ref|YP_001098105.1| - 0.82 8.9 27.5 0.56 9.5 9.2 3.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) ISG65-75 PF11727.8 gi|134046620|ref|YP_001098105.1| - 0.91 8.7 33.0 0.49 9.6 3.0 3.9 1 1 3 4 4 4 0 Invariant surface glycoprotein DUF745 PF05335.13 gi|134046620|ref|YP_001098105.1| - 0.96 9.1 34.2 1.5 8.5 18.0 4.3 1 1 4 5 5 5 0 Protein of unknown function (DUF745) Mod_r PF07200.13 gi|134046620|ref|YP_001098105.1| - 0.99 9.5 20.8 3.7 7.6 9.9 3.8 2 1 0 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Mce4_CUP1 PF11887.8 gi|134046620|ref|YP_001098105.1| - 0.99 8.8 15.2 2 7.8 0.2 3.9 2 1 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative DASH_Dad1 PF08649.10 gi|134046620|ref|YP_001098105.1| - 1.4 9.1 18.0 2.2 8.6 0.7 5.5 5 0 0 5 5 5 0 DASH complex subunit Dad1 Herpes_UL6 PF01763.16 gi|134046620|ref|YP_001098105.1| - 1.5 7.3 22.8 0.081 11.4 10.2 2.3 1 1 1 2 2 2 0 Herpesvirus UL6 like BDV_P24 PF06595.11 gi|134046620|ref|YP_001098105.1| - 1.9 8.3 6.9 1.6 8.6 4.2 2.3 1 1 1 2 2 2 0 Borna disease virus P24 protein DUF2203 PF09969.9 gi|134046620|ref|YP_001098105.1| - 1.9 9.2 25.4 0.85 10.4 1.3 5.2 2 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) DisA-linker PF10635.9 gi|134046620|ref|YP_001098105.1| - 2.4 7.9 13.3 0.03 14.1 2.8 3.0 2 1 1 3 3 2 0 DisA bacterial checkpoint controller linker region DASH_Dam1 PF08653.10 gi|134046620|ref|YP_001098105.1| - 2.9 7.8 7.2 11 5.9 0.2 4.6 5 0 0 5 5 3 0 DASH complex subunit Dam1 Laminin_II PF06009.12 gi|134046620|ref|YP_001098105.1| - 2.9 7.9 42.1 2.3 8.2 11.2 6.1 3 2 3 6 6 5 0 Laminin Domain II TPR_MLP1_2 PF07926.12 gi|134046620|ref|YP_001098105.1| - 3.1 7.9 31.1 5.6 7.0 3.3 4.9 2 1 2 5 5 5 0 TPR/MLP1/MLP2-like protein Occludin_ELL PF07303.13 gi|134046620|ref|YP_001098105.1| - 3.5 8.4 10.3 36 5.2 2.9 4.8 3 1 1 5 5 4 0 Occludin homology domain DUF16 PF01519.16 gi|134046620|ref|YP_001098105.1| - 3.9 8.0 29.6 29 5.2 0.5 5.3 1 1 2 4 4 4 0 Protein of unknown function DUF16 COG2 PF06148.11 gi|134046620|ref|YP_001098105.1| - 4 7.5 25.2 2.8 8.0 0.4 5.3 2 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 APG17 PF04108.12 gi|134046620|ref|YP_001098105.1| - 4.2 6.4 27.7 17 4.4 18.2 3.6 1 1 1 2 2 2 0 Autophagy protein Apg17 TolA_bind_tri PF16331.5 gi|134046620|ref|YP_001098105.1| - 4.7 7.4 12.3 14 5.8 2.0 4.2 3 1 2 5 5 3 0 TolA binding protein trimerisation ATG16 PF08614.11 gi|134046620|ref|YP_001098105.1| - 5 7.3 29.5 0.4 10.9 8.9 4.0 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) SKA1 PF07160.12 gi|134046620|ref|YP_001098105.1| - 5.2 6.9 21.7 0.71 9.7 10.8 3.6 2 2 1 3 3 3 0 Spindle and kinetochore-associated protein 1 Cep57_MT_bd PF06657.13 gi|134046620|ref|YP_001098105.1| - 5.9 7.4 14.8 12 6.5 3.4 4.5 4 1 1 5 5 5 0 Centrosome microtubule-binding domain of Cep57 Spc7 PF08317.11 gi|134046620|ref|YP_001098105.1| - 6 5.7 32.9 4.6 6.0 1.6 3.5 1 1 2 4 4 4 0 Spc7 kinetochore protein Seryl_tRNA_N PF02403.22 gi|134046620|ref|YP_001098105.1| - 6.6 7.0 38.3 0.12 12.6 6.9 5.7 1 1 4 6 6 6 0 Seryl-tRNA synthetase N-terminal domain DUF4407 PF14362.6 gi|134046620|ref|YP_001098105.1| - 7.8 5.7 34.3 19 4.5 5.9 3.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) CREPT PF16566.5 gi|134046620|ref|YP_001098105.1| - 8.5 6.5 17.0 9.7 6.4 3.7 4.0 2 2 2 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour FrhB_FdhB_C PF04432.13 gi|134046621|ref|YP_001098106.1| - 7.7e-38 129.7 0.1 1.5e-37 128.8 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|134046621|ref|YP_001098106.1| - 1.1e-22 80.0 0.0 2e-22 79.1 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|134046621|ref|YP_001098106.1| - 1e-07 31.5 3.2 1e-07 31.5 3.2 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|134046621|ref|YP_001098106.1| - 1.4e-06 28.6 2.1 0.031 14.7 1.3 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134046621|ref|YP_001098106.1| - 2.7e-06 27.2 2.0 2.7e-06 27.2 2.0 3.3 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134046621|ref|YP_001098106.1| - 1.6e-05 24.7 3.3 1.6e-05 24.7 3.3 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|134046621|ref|YP_001098106.1| - 7.7e-05 23.6 17.5 0.00036 21.4 15.3 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|134046621|ref|YP_001098106.1| - 0.00015 22.3 16.7 0.00015 22.3 16.7 2.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134046621|ref|YP_001098106.1| - 0.00019 21.7 9.7 0.0004 20.7 2.6 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|134046621|ref|YP_001098106.1| - 0.00072 19.6 0.7 0.00072 19.6 0.7 3.5 3 1 1 4 4 4 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134046621|ref|YP_001098106.1| - 0.00076 19.5 20.9 0.015 15.4 19.1 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134046621|ref|YP_001098106.1| - 0.008 16.3 3.0 0.008 16.3 3.0 3.2 2 1 2 4 4 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|134046621|ref|YP_001098106.1| - 0.008 16.7 1.2 0.008 16.7 1.2 3.2 4 0 0 4 4 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|134046621|ref|YP_001098106.1| - 0.019 15.8 4.8 0.019 15.8 4.8 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|134046621|ref|YP_001098106.1| - 0.068 13.4 9.9 0.1 12.8 4.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Arc_PepC PF06819.11 gi|134046621|ref|YP_001098106.1| - 0.07 13.3 3.2 0.39 10.9 0.5 2.7 2 1 0 3 3 3 0 Archaeal Peptidase A24 C-terminal Domain DisA_N PF02457.16 gi|134046621|ref|YP_001098106.1| - 0.074 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding Fer4_22 PF17179.4 gi|134046621|ref|YP_001098106.1| - 0.13 13.1 0.6 0.13 13.1 0.6 3.4 5 0 0 5 5 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134046621|ref|YP_001098106.1| - 0.15 12.6 15.2 0.23 12.0 2.7 3.0 3 1 1 4 4 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134046621|ref|YP_001098106.1| - 0.18 12.5 6.4 0.36 11.6 4.1 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain GXGXG PF01493.19 gi|134046622|ref|YP_001098107.1| - 1e-38 132.8 8.1 1.3e-38 132.5 8.1 1.1 1 0 0 1 1 1 1 GXGXG motif Glu_synthase PF01645.17 gi|134046623|ref|YP_001098108.1| - 2.8e-145 484.1 1.2 2.8e-145 484.1 1.2 1.6 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|134046623|ref|YP_001098108.1| - 7.5e-15 55.1 0.1 3.6e-08 33.2 0.1 2.3 2 0 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.18 gi|134046623|ref|YP_001098108.1| - 1.6e-12 47.1 6.2 3.5e-09 36.2 1.8 3.1 3 0 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|134046623|ref|YP_001098108.1| - 3.6e-10 39.4 5.2 1.3e-07 30.9 3.2 3.0 3 0 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|134046623|ref|YP_001098108.1| - 3.9e-07 29.8 4.3 3.9e-07 29.8 4.3 1.7 1 1 0 2 2 2 1 Nitronate monooxygenase Fer4 PF00037.27 gi|134046623|ref|YP_001098108.1| - 6e-07 29.0 19.8 0.00021 20.9 1.3 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134046623|ref|YP_001098108.1| - 6.8e-07 29.8 16.3 0.005 17.4 1.5 3.6 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134046623|ref|YP_001098108.1| - 3.5e-05 23.8 18.4 0.00049 20.2 11.3 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134046623|ref|YP_001098108.1| - 7.5e-05 22.8 14.0 0.00092 19.3 9.2 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain DHO_dh PF01180.21 gi|134046623|ref|YP_001098108.1| - 0.00012 21.4 4.6 0.00028 20.2 2.2 2.4 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase Fer4_21 PF14697.6 gi|134046623|ref|YP_001098108.1| - 0.00024 21.2 5.3 0.00024 21.2 5.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134046623|ref|YP_001098108.1| - 0.00059 19.8 23.3 0.0019 18.2 2.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|134046623|ref|YP_001098108.1| - 0.00064 19.7 23.5 0.00064 19.7 0.9 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain His_biosynth PF00977.21 gi|134046623|ref|YP_001098108.1| - 0.0016 18.0 0.1 0.0028 17.2 0.1 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_16 PF13484.6 gi|134046623|ref|YP_001098108.1| - 0.086 13.8 17.1 0.076 14.0 3.4 3.5 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain G3P_antiterm PF04309.12 gi|134046623|ref|YP_001098108.1| - 0.1 12.0 0.4 0.24 10.8 0.1 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Ntox27 PF15531.6 gi|134046623|ref|YP_001098108.1| - 0.1 12.5 0.0 0.3 11.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial toxin 27 Fer4_8 PF13183.6 gi|134046623|ref|YP_001098108.1| - 0.11 12.9 17.3 1.9 9.0 2.4 3.5 2 1 2 4 4 4 0 4Fe-4S dicluster domain PcrB PF01884.17 gi|134046623|ref|YP_001098108.1| - 0.61 9.5 2.4 20 4.5 0.4 2.7 1 1 2 3 3 3 0 PcrB family Fer4_17 PF13534.6 gi|134046623|ref|YP_001098108.1| - 3.4 8.3 19.7 7.1 7.3 1.2 3.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain GATase_2 PF00310.21 gi|134046624|ref|YP_001098109.1| - 1.2e-08 34.1 0.7 6.7e-07 28.4 0.7 2.4 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|134046624|ref|YP_001098109.1| - 7.8e-08 32.6 0.0 1.4e-06 28.5 0.0 2.3 1 1 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|134046624|ref|YP_001098109.1| - 0.00019 21.3 0.0 0.095 12.6 0.0 2.4 2 0 0 2 2 2 2 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|134046625|ref|YP_001098110.1| - 3.6e-16 59.1 0.1 4.9e-16 58.6 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|134046625|ref|YP_001098110.1| - 0.016 14.8 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase HTH_7 PF02796.15 gi|134046625|ref|YP_001098110.1| - 0.026 14.6 0.0 0.055 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase UPRTase PF14681.6 gi|134046625|ref|YP_001098110.1| - 0.031 13.7 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_11 PF08279.12 gi|134046625|ref|YP_001098110.1| - 0.038 13.9 0.0 0.08 12.9 0.0 1.6 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.12 gi|134046625|ref|YP_001098110.1| - 0.15 11.7 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|134046625|ref|YP_001098110.1| - 0.18 11.7 0.0 0.39 10.6 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Radical_SAM PF04055.21 gi|134046626|ref|YP_001098111.1| - 5.7e-13 49.6 0.1 9.3e-13 48.9 0.1 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|134046626|ref|YP_001098111.1| - 9.2e-09 35.7 0.0 2.4e-08 34.4 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|134046626|ref|YP_001098111.1| - 4.7e-08 33.2 0.0 1e-07 32.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain TRAM PF01938.20 gi|134046627|ref|YP_001098112.1| - 3.1e-15 55.9 1.3 3.5e-15 55.7 1.3 1.1 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|134046627|ref|YP_001098112.1| - 0.018 15.2 1.2 0.091 12.9 1.1 1.9 1 1 0 1 1 1 0 TRAM domain CPBP PF02517.16 gi|134046628|ref|YP_001098113.1| - 1.1e-09 38.5 1.2 1.1e-09 38.5 1.2 3.2 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease CxxCxxCC PF03692.15 gi|134046629|ref|YP_001098114.1| - 0.041 14.6 16.2 3.6 8.3 16.0 2.3 1 1 0 1 1 1 0 Putative zinc- or iron-chelating domain Arginosuc_synth PF00764.19 gi|134046630|ref|YP_001098115.1| - 3.8e-178 592.7 0.3 4.3e-178 592.5 0.3 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|134046630|ref|YP_001098115.1| - 1.7e-06 27.7 0.0 1e-05 25.2 0.0 2.0 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Hydantoinase_A PF01968.18 gi|134046631|ref|YP_001098116.1| - 2.5e-38 132.0 0.3 6.8e-38 130.6 0.2 1.6 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|134046631|ref|YP_001098116.1| - 0.0012 17.6 0.1 0.04 12.5 0.1 2.2 2 0 0 2 2 2 2 MutL protein Hydant_A_N PF05378.13 gi|134046631|ref|YP_001098116.1| - 0.023 14.4 1.0 4 7.1 0.1 3.1 3 1 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region Actin PF00022.19 gi|134046631|ref|YP_001098116.1| - 0.035 12.7 0.1 0.12 11.0 0.1 1.8 1 1 0 2 2 2 0 Actin FtsA PF14450.6 gi|134046631|ref|YP_001098116.1| - 0.077 13.4 2.5 3.2 8.2 0.0 3.5 3 2 0 3 3 3 0 Cell division protein FtsA DNA_primase_S PF01896.19 gi|134046632|ref|YP_001098117.1| - 3e-08 33.9 0.7 8.3e-08 32.5 0.7 1.7 1 1 0 1 1 1 1 DNA primase small subunit GXGXG PF01493.19 gi|134046633|ref|YP_001098118.1| - 1.4e-09 37.8 13.0 6.8e-06 25.8 5.5 2.7 2 1 1 3 3 3 3 GXGXG motif S4_2 PF13275.6 gi|134046633|ref|YP_001098118.1| - 0.18 11.6 4.7 13 5.7 0.0 3.5 2 1 1 3 3 3 0 S4 domain DNA_binding_1 PF01035.20 gi|134046634|ref|YP_001098119.1| - 7.6e-28 96.5 0.0 8.8e-28 96.3 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Ammonium_transp PF00909.21 gi|134046635|ref|YP_001098120.1| - 7e-97 324.6 30.9 7.9e-97 324.5 30.9 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family Prenyltrans PF00432.21 gi|134046635|ref|YP_001098120.1| - 0.29 10.9 3.4 11 5.8 0.1 3.0 1 1 1 2 2 2 0 Prenyltransferase and squalene oxidase repeat P-II PF00543.22 gi|134046636|ref|YP_001098121.1| - 9.6e-35 119.3 1.8 1.1e-34 119.1 1.8 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II P-II PF00543.22 gi|134046637|ref|YP_001098122.1| - 1.7e-36 124.9 0.4 2e-36 124.7 0.4 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.21 gi|134046638|ref|YP_001098123.1| - 3.2e-103 345.5 32.6 3.9e-103 345.2 32.6 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|134046639|ref|YP_001098124.1| - 2.8e-36 124.2 2.4 3.2e-36 124.0 2.4 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II AA_kinase PF00696.28 gi|134046640|ref|YP_001098125.1| - 5.5e-49 166.9 4.3 6.3e-49 166.7 4.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family Ribosomal_L31e PF01198.19 gi|134046641|ref|YP_001098126.1| - 3e-15 56.2 1.0 3.7e-15 55.9 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|134046642|ref|YP_001098127.1| - 2.7e-58 196.6 0.7 3.2e-58 196.4 0.7 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|134046643|ref|YP_001098128.1| - 3.6e-11 43.2 0.2 4.5e-11 42.9 0.2 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A DUF2666 PF10869.8 gi|134046644|ref|YP_001098129.1| - 6.2e-63 211.0 13.4 7e-63 210.8 13.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2666) Bac_luciferase PF00296.20 gi|134046645|ref|YP_001098130.1| - 7.7e-58 196.4 0.4 9.5e-58 196.1 0.4 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Radical_SAM PF04055.21 gi|134046646|ref|YP_001098131.1| - 2.2e-15 57.4 0.1 4.1e-15 56.6 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|134046647|ref|YP_001098132.1| - 3.6e-14 53.5 0.2 6.1e-14 52.7 0.2 1.4 1 0 0 1 1 1 1 Radical SAM superfamily PUA PF01472.20 gi|134046648|ref|YP_001098133.1| - 5.3e-20 71.2 2.3 5.3e-20 71.2 2.3 1.6 2 0 0 2 2 2 1 PUA domain DUF1947 PF09183.10 gi|134046648|ref|YP_001098133.1| - 1.8e-09 37.7 0.4 4.2e-09 36.6 0.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) Pre-PUA PF17832.1 gi|134046648|ref|YP_001098133.1| - 0.0001 22.9 0.0 0.0002 22.0 0.0 1.6 1 1 0 1 1 1 1 Pre-PUA-like domain UFD1 PF03152.14 gi|134046648|ref|YP_001098133.1| - 0.0029 17.1 0.0 0.004 16.7 0.0 1.2 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 UPF0113 PF03657.13 gi|134046648|ref|YP_001098133.1| - 0.013 15.7 0.2 0.023 15.0 0.2 1.4 1 0 0 1 1 1 0 UPF0113 PUA domain PCB_OB PF17092.5 gi|134046648|ref|YP_001098133.1| - 0.021 15.6 0.1 0.037 14.8 0.1 1.4 1 1 0 1 1 1 0 Penicillin-binding protein OB-like domain DUF2604 PF10790.9 gi|134046648|ref|YP_001098133.1| - 0.047 14.0 0.1 0.12 12.7 0.1 1.7 1 0 0 1 1 1 0 Protein of Unknown function (DUF2604) PrmA PF06325.13 gi|134046649|ref|YP_001098134.1| - 1.2e-17 64.2 2.2 1.6e-17 63.9 0.9 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|134046649|ref|YP_001098134.1| - 2.8e-17 62.8 0.4 9.3e-16 57.8 0.4 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|134046649|ref|YP_001098134.1| - 1.6e-15 57.2 0.2 2e-15 56.9 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|134046649|ref|YP_001098134.1| - 1.7e-11 44.6 0.0 4.1e-11 43.4 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|134046649|ref|YP_001098134.1| - 6.5e-09 35.5 0.1 8.4e-09 35.1 0.1 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_11 PF08241.12 gi|134046649|ref|YP_001098134.1| - 1.2e-08 35.5 0.0 1.9e-08 34.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|134046649|ref|YP_001098134.1| - 3.1e-08 33.6 0.0 4.3e-08 33.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|134046649|ref|YP_001098134.1| - 1.5e-07 31.3 0.1 2.7e-07 30.4 0.0 1.4 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.7 gi|134046649|ref|YP_001098134.1| - 2.2e-06 27.7 0.5 5.4e-06 26.4 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|134046649|ref|YP_001098134.1| - 3.1e-06 26.9 0.1 3.5e-06 26.7 0.1 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 gi|134046649|ref|YP_001098134.1| - 8.3e-06 25.7 0.2 1.2e-05 25.2 0.2 1.4 1 1 0 1 1 1 1 Met-10+ like-protein PCMT PF01135.19 gi|134046649|ref|YP_001098134.1| - 9.9e-06 25.4 0.0 1.5e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TRM PF02005.16 gi|134046649|ref|YP_001098134.1| - 3.2e-05 23.3 0.2 7.3e-05 22.1 0.1 1.6 2 0 0 2 2 2 1 N2,N2-dimethylguanosine tRNA methyltransferase UPF0020 PF01170.18 gi|134046649|ref|YP_001098134.1| - 4.9e-05 23.1 0.0 9.8e-05 22.1 0.0 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.11 gi|134046649|ref|YP_001098134.1| - 5e-05 22.4 0.0 6.8e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_12 PF08242.12 gi|134046649|ref|YP_001098134.1| - 7e-05 23.5 0.1 0.00015 22.5 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain CMAS PF02353.20 gi|134046649|ref|YP_001098134.1| - 0.00015 21.2 0.1 0.00058 19.2 0.1 1.8 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase rRNA_methylase PF06962.12 gi|134046649|ref|YP_001098134.1| - 0.00052 20.0 0.0 0.0017 18.4 0.0 1.8 2 0 0 2 2 2 1 Putative rRNA methylase Methyltransf_2 PF00891.18 gi|134046649|ref|YP_001098134.1| - 0.0021 17.4 0.0 0.0092 15.3 0.0 1.9 1 1 0 1 1 1 1 O-methyltransferase domain Methyltransf_10 PF05971.12 gi|134046649|ref|YP_001098134.1| - 0.0024 17.3 0.0 0.0048 16.3 0.0 1.3 1 1 0 1 1 1 1 RNA methyltransferase Methyltrans_SAM PF10672.9 gi|134046649|ref|YP_001098134.1| - 0.0025 17.0 0.1 0.0041 16.3 0.1 1.3 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_3 PF01596.17 gi|134046649|ref|YP_001098134.1| - 0.0058 15.8 0.2 0.01 15.0 0.1 1.4 2 0 0 2 2 2 1 O-methyltransferase Pox_MCEL PF03291.16 gi|134046649|ref|YP_001098134.1| - 0.0067 15.6 0.1 0.012 14.8 0.1 1.3 1 0 0 1 1 1 1 mRNA capping enzyme DUF2431 PF10354.9 gi|134046649|ref|YP_001098134.1| - 0.0079 16.5 0.0 0.0091 16.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2431) Methyltransf_32 PF13679.6 gi|134046649|ref|YP_001098134.1| - 0.008 16.2 0.0 0.0092 16.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|134046649|ref|YP_001098134.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 0 Lysine methyltransferase MethyltransfD12 PF02086.15 gi|134046649|ref|YP_001098134.1| - 0.016 14.9 1.2 0.55 9.9 0.1 2.0 1 1 1 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.18 gi|134046649|ref|YP_001098134.1| - 0.031 14.0 0.1 0.087 12.5 0.0 1.7 2 0 0 2 2 2 0 DNA methylase Ubie_methyltran PF01209.18 gi|134046649|ref|YP_001098134.1| - 0.032 13.6 0.3 0.044 13.1 0.2 1.4 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family TrmK PF04816.12 gi|134046649|ref|YP_001098134.1| - 0.1 12.1 0.5 0.5 9.9 0.0 1.9 2 0 0 2 2 2 0 tRNA (adenine(22)-N(1))-methyltransferase NIF3 PF01784.18 gi|134046650|ref|YP_001098135.1| - 1.3e-57 195.3 0.1 1.6e-57 195.0 0.1 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) HrcA_DNA-bdg PF03444.15 gi|134046651|ref|YP_001098136.1| - 5.7e-36 122.0 0.3 1.3e-35 120.8 0.3 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|134046651|ref|YP_001098136.1| - 7.9e-25 87.1 3.5 1.3e-11 44.8 0.2 2.9 3 0 0 3 3 3 2 CBS domain HTH_11 PF08279.12 gi|134046651|ref|YP_001098136.1| - 1.8e-06 27.8 0.1 4e-06 26.7 0.1 1.6 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|134046651|ref|YP_001098136.1| - 3.2e-05 24.2 0.0 7.5e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator DDRGK PF09756.9 gi|134046651|ref|YP_001098136.1| - 0.037 13.6 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 DDRGK domain HTH_38 PF13936.6 gi|134046651|ref|YP_001098136.1| - 0.08 12.7 0.2 0.2 11.5 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4889 PF16230.5 gi|134046651|ref|YP_001098136.1| - 2.7 8.3 5.3 0.43 10.8 0.6 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4889) Glycos_transf_2 PF00535.26 gi|134046653|ref|YP_001098138.1| - 1.8e-34 119.0 0.2 1.1e-33 116.4 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|134046653|ref|YP_001098138.1| - 5.7e-14 52.6 0.0 7.7e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|134046653|ref|YP_001098138.1| - 6.7e-06 25.8 0.1 8.7e-06 25.4 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|134046653|ref|YP_001098138.1| - 0.0018 18.7 0.0 0.0033 17.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|134046653|ref|YP_001098138.1| - 0.21 11.0 0.0 0.34 10.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 LPG_synthase_TM PF03706.13 gi|134046654|ref|YP_001098139.1| - 9e-50 169.9 20.4 1e-49 169.7 20.4 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region PRA-PH PF01503.17 gi|134046655|ref|YP_001098140.1| - 7.9e-20 71.1 0.4 9.7e-20 70.8 0.4 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|134046655|ref|YP_001098140.1| - 0.0036 17.5 0.9 0.0036 17.5 0.9 1.6 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain mCpol PF18182.1 gi|134046655|ref|YP_001098140.1| - 0.0081 16.5 0.4 0.01 16.1 0.4 1.2 1 0 0 1 1 1 1 minimal CRISPR polymerase domain MazG-like PF12643.7 gi|134046655|ref|YP_001098140.1| - 0.0099 16.1 1.4 0.013 15.7 0.6 1.7 1 1 0 2 2 2 1 MazG-like family Glyco_tran_WecB PF03808.13 gi|134046655|ref|YP_001098140.1| - 0.18 11.7 0.1 0.2 11.6 0.1 1.1 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family DMRL_synthase PF00885.19 gi|134046656|ref|YP_001098141.1| - 5e-34 117.2 0.2 5.5e-34 117.0 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Hexapep PF00132.24 gi|134046657|ref|YP_001098142.1| - 3e-19 67.9 9.7 3e-10 39.4 1.0 4.2 2 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|134046657|ref|YP_001098142.1| - 5.2e-08 32.5 15.2 1.9e-07 30.7 1.9 4.2 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|134046657|ref|YP_001098142.1| - 0.00051 19.1 1.0 0.0014 17.6 1.0 1.7 1 1 0 1 1 1 1 L-fucokinase DUF4954 PF16314.5 gi|134046657|ref|YP_001098142.1| - 0.0075 14.5 3.4 0.0094 14.1 3.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Phage_TAC_5 PF08890.11 gi|134046657|ref|YP_001098142.1| - 0.11 12.5 0.0 11 6.0 0.0 2.2 2 0 0 2 2 2 0 Phage XkdN-like tail assembly chaperone protein, TAC Radical_SAM PF04055.21 gi|134046659|ref|YP_001098144.1| - 1.7e-25 90.3 1.2 1.7e-24 87.1 0.2 2.6 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|134046659|ref|YP_001098144.1| - 1.6e-11 44.3 0.0 2.9e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain DUF2118 PF09891.9 gi|134046660|ref|YP_001098145.1| - 5.1e-37 127.1 0.4 5.6e-37 127.0 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) polyprenyl_synt PF00348.17 gi|134046661|ref|YP_001098146.1| - 1.6e-73 247.0 0.4 2e-73 246.6 0.4 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF1687 PF07955.11 gi|134046661|ref|YP_001098146.1| - 0.035 14.6 0.1 0.28 11.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1687) DUF148 PF02520.17 gi|134046661|ref|YP_001098146.1| - 0.052 13.7 0.5 0.19 11.8 0.4 2.1 1 1 0 1 1 1 0 Domain of unknown function DUF148 DUF1840 PF08895.11 gi|134046661|ref|YP_001098146.1| - 0.26 11.6 2.1 0.8 10.1 1.1 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1840) DUF1542 PF07564.11 gi|134046661|ref|YP_001098146.1| - 0.35 11.0 6.5 1.5 9.0 4.7 2.6 3 0 0 3 3 3 0 Domain of Unknown Function (DUF1542) RMMBL PF07521.12 gi|134046662|ref|YP_001098147.1| - 4.2e-12 45.8 1.0 8.2e-11 41.7 0.2 2.6 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|134046662|ref|YP_001098147.1| - 5.6e-09 36.3 2.3 2e-08 34.5 1.8 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|134046662|ref|YP_001098147.1| - 2.2e-08 33.9 0.3 5.3e-08 32.6 0.1 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 gi|134046662|ref|YP_001098147.1| - 0.008 15.3 0.1 0.013 14.7 0.1 1.2 1 0 0 1 1 1 1 cAMP phosphodiesterases class-II FMN_dh PF01070.18 gi|134046663|ref|YP_001098148.1| - 6.2e-23 81.4 0.0 6.5e-17 61.6 0.0 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|134046663|ref|YP_001098148.1| - 3.9e-07 29.4 4.5 0.00094 18.3 0.1 3.5 4 0 0 4 4 4 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|134046663|ref|YP_001098148.1| - 0.00039 19.7 0.1 0.001 18.3 0.1 1.6 1 1 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|134046663|ref|YP_001098148.1| - 0.012 14.8 0.4 0.048 12.9 0.2 2.0 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase DUF561 PF04481.12 gi|134046663|ref|YP_001098148.1| - 0.023 13.9 0.1 0.041 13.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) NMO PF03060.15 gi|134046663|ref|YP_001098148.1| - 0.03 13.7 0.2 0.046 13.1 0.2 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase YokU PF14122.6 gi|134046663|ref|YP_001098148.1| - 0.23 11.5 0.8 1.8 8.6 0.2 2.6 2 0 0 2 2 2 0 YokU-like protein, putative antitoxin Gar1 PF04410.14 gi|134046664|ref|YP_001098149.1| - 2.9e-08 33.7 0.1 3.3e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 gi|134046665|ref|YP_001098150.1| - 9.4e-42 140.9 0.8 3e-20 72.1 0.2 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|134046665|ref|YP_001098150.1| - 9e-17 60.3 1.0 9e-17 60.3 1.0 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|134046665|ref|YP_001098150.1| - 0.00067 19.1 0.8 0.04 13.4 0.1 3.4 3 1 1 4 4 4 1 Sigma-70, region 4 RPA_interact_C PF14768.6 gi|134046665|ref|YP_001098150.1| - 0.0023 18.4 0.3 0.12 12.9 0.1 2.3 2 0 0 2 2 2 1 Replication protein A interacting C-terminal HTH_AsnC-type PF13404.6 gi|134046665|ref|YP_001098150.1| - 0.0039 17.0 0.2 0.019 14.8 0.2 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain UPF0253 PF06786.12 gi|134046665|ref|YP_001098150.1| - 0.0084 16.4 0.1 0.1 12.9 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0253) Lar_restr_allev PF14354.6 gi|134046665|ref|YP_001098150.1| - 0.013 15.9 1.3 0.083 13.3 0.8 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar Cyclin_C PF02984.19 gi|134046665|ref|YP_001098150.1| - 0.066 13.3 0.0 17 5.5 0.0 2.3 2 0 0 2 2 2 0 Cyclin, C-terminal domain Ribosomal_S27e PF01667.17 gi|134046665|ref|YP_001098150.1| - 0.38 10.5 2.4 0.77 9.5 2.4 1.5 1 0 0 1 1 1 0 Ribosomal protein S27 zf-CCHC_4 PF14392.6 gi|134046665|ref|YP_001098150.1| - 0.42 10.4 2.6 1.6 8.5 2.6 2.0 1 0 0 1 1 1 0 Zinc knuckle T2SSE PF00437.20 gi|134046666|ref|YP_001098151.1| - 3.8e-56 190.1 0.0 5.5e-56 189.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.18 gi|134046666|ref|YP_001098151.1| - 0.00019 20.9 0.0 0.00048 19.6 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family ABC_tran PF00005.27 gi|134046666|ref|YP_001098151.1| - 0.0084 16.6 1.6 0.019 15.5 0.0 2.3 2 1 0 2 2 2 1 ABC transporter AAA_29 PF13555.6 gi|134046666|ref|YP_001098151.1| - 0.0096 15.6 1.0 0.051 13.3 1.0 2.1 1 1 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|134046666|ref|YP_001098151.1| - 0.014 15.9 6.4 0.019 15.4 0.1 2.6 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|134046666|ref|YP_001098151.1| - 0.027 13.8 0.0 0.054 12.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.6 gi|134046666|ref|YP_001098151.1| - 0.034 14.5 0.2 0.14 12.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|134046666|ref|YP_001098151.1| - 0.17 11.5 0.1 0.32 10.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain T2SSF PF00482.23 gi|134046667|ref|YP_001098152.1| - 6.8e-12 45.4 0.1 6.8e-12 45.4 0.1 2.5 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F T2SSF PF00482.23 gi|134046668|ref|YP_001098153.1| - 2e-12 47.2 2.7 2.1e-12 47.1 0.5 2.2 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF3278 PF11683.8 gi|134046668|ref|YP_001098153.1| - 0.0039 17.3 3.8 0.84 9.7 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF3278) DUF5578 PF17741.1 gi|134046668|ref|YP_001098153.1| - 0.039 13.4 0.1 0.063 12.7 0.1 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5578) DASH_Dam1 PF08653.10 gi|134046668|ref|YP_001098153.1| - 0.097 12.5 0.7 0.96 9.3 0.1 2.4 2 0 0 2 2 2 0 DASH complex subunit Dam1 DUF3754 PF12576.8 gi|134046668|ref|YP_001098153.1| - 1.3 8.9 5.0 3.9 7.4 0.2 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF3754) S_4TM PF18159.1 gi|134046668|ref|YP_001098153.1| - 3.1 7.0 6.9 0.15 11.3 0.3 2.0 2 1 0 2 2 2 0 SMODS-associating 4TM effector domain HD PF01966.22 gi|134046669|ref|YP_001098154.1| - 2.4e-11 43.9 0.6 3.3e-11 43.5 0.6 1.2 1 0 0 1 1 1 1 HD domain TFIIE_alpha PF02002.17 gi|134046670|ref|YP_001098155.1| - 1.3e-29 102.1 3.8 2e-29 101.5 3.8 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HypA PF01155.19 gi|134046670|ref|YP_001098155.1| - 1.5e-05 24.9 0.1 2.5e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|134046670|ref|YP_001098155.1| - 0.00057 19.3 1.4 0.00057 19.3 1.4 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding HTH_9 PF08221.11 gi|134046670|ref|YP_001098155.1| - 0.0048 17.0 0.0 0.0087 16.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|134046670|ref|YP_001098155.1| - 0.0074 16.1 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|134046670|ref|YP_001098155.1| - 0.035 14.1 0.0 0.06 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2072 PF09845.9 gi|134046670|ref|YP_001098155.1| - 0.048 13.9 0.9 0.1 12.9 0.9 1.5 1 0 0 1 1 1 0 Zn-ribbon containing protein Rrf2 PF02082.20 gi|134046670|ref|YP_001098155.1| - 0.058 13.7 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator zf-ACC PF17848.1 gi|134046670|ref|YP_001098155.1| - 0.07 13.2 0.1 0.23 11.5 0.1 1.9 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain MarR_2 PF12802.7 gi|134046670|ref|YP_001098155.1| - 0.093 12.6 0.0 0.23 11.4 0.0 1.6 1 1 0 1 1 1 0 MarR family HTH_34 PF13601.6 gi|134046670|ref|YP_001098155.1| - 0.12 12.6 0.1 0.27 11.4 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|134046670|ref|YP_001098155.1| - 0.14 12.0 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain zf-RRN7 PF11781.8 gi|134046670|ref|YP_001098155.1| - 0.24 11.1 0.1 0.24 11.1 0.1 1.8 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf_UBZ PF18439.1 gi|134046670|ref|YP_001098155.1| - 0.31 10.7 1.2 17 5.1 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger RNA_POL_M_15KD PF02150.16 gi|134046670|ref|YP_001098155.1| - 0.5 10.3 4.4 1.7 8.6 0.2 2.6 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2_3 PF13878.6 gi|134046670|ref|YP_001098155.1| - 0.66 9.9 3.8 2.9 7.8 1.5 2.3 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO ATP-grasp_3 PF02655.14 gi|134046671|ref|YP_001098156.1| - 1.5e-44 151.9 0.1 2.7e-44 151.1 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|134046671|ref|YP_001098156.1| - 1.4e-07 31.1 0.5 6.4e-05 22.3 0.1 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|134046671|ref|YP_001098156.1| - 1.1e-06 28.1 0.1 1.2e-05 24.8 0.0 2.2 1 1 0 2 2 2 1 YheC/D like ATP-grasp RimK PF08443.11 gi|134046671|ref|YP_001098156.1| - 2.1e-05 24.2 0.1 0.00029 20.5 0.1 2.1 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|134046671|ref|YP_001098156.1| - 0.0018 17.7 0.0 0.0036 16.7 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|134046671|ref|YP_001098156.1| - 0.0025 17.6 0.0 0.006 16.3 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|134046671|ref|YP_001098156.1| - 0.047 13.2 0.1 0.22 11.0 0.0 2.0 1 1 1 2 2 2 0 D-ala D-ala ligase C-terminus GCHY-1 PF02649.14 gi|134046672|ref|YP_001098157.1| - 2e-79 266.8 3.5 2.2e-79 266.6 3.5 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 Ribosomal_S10 PF00338.22 gi|134046672|ref|YP_001098157.1| - 0.072 13.3 0.1 0.39 11.0 0.0 2.2 2 1 0 2 2 2 0 Ribosomal protein S10p/S20e YscJ_FliF_C PF08345.11 gi|134046672|ref|YP_001098157.1| - 0.098 13.0 0.1 0.19 12.0 0.1 1.5 1 0 0 1 1 1 0 Flagellar M-ring protein C-terminal AAA_16 PF13191.6 gi|134046673|ref|YP_001098158.1| - 2.4e-09 37.8 0.0 5.1e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain HTH_5 PF01022.20 gi|134046673|ref|YP_001098158.1| - 3.9e-09 36.2 0.0 2.6e-08 33.6 0.0 2.4 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family ATPase_2 PF01637.18 gi|134046673|ref|YP_001098158.1| - 1.1e-07 32.0 0.1 2.3e-07 31.0 0.1 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|134046673|ref|YP_001098158.1| - 1.5e-06 28.7 0.0 8.8e-06 26.2 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|134046673|ref|YP_001098158.1| - 1.3e-05 25.5 0.0 3.9e-05 24.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|134046673|ref|YP_001098158.1| - 0.0038 16.5 0.0 0.25 10.5 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_14 PF13173.6 gi|134046673|ref|YP_001098158.1| - 0.0061 16.6 0.3 1.9 8.5 0.3 2.6 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|134046673|ref|YP_001098158.1| - 0.0069 16.1 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF2791 PF10923.8 gi|134046673|ref|YP_001098158.1| - 0.014 14.3 0.0 0.069 12.0 0.0 2.1 2 0 0 2 2 2 0 P-loop Domain of unknown function (DUF2791) ABC_tran PF00005.27 gi|134046673|ref|YP_001098158.1| - 0.018 15.5 1.8 0.022 15.2 0.3 2.0 2 2 1 3 3 2 0 ABC transporter AAA_15 PF13175.6 gi|134046673|ref|YP_001098158.1| - 0.021 14.5 1.9 0.051 13.3 2.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain DUF815 PF05673.13 gi|134046673|ref|YP_001098158.1| - 0.022 13.9 0.3 0.06 12.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) TrmB PF01978.19 gi|134046673|ref|YP_001098158.1| - 0.043 13.7 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Methyltransf_18 PF12847.7 gi|134046673|ref|YP_001098158.1| - 0.043 13.7 0.7 0.12 12.3 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain FtsK_SpoIIIE PF01580.18 gi|134046673|ref|YP_001098158.1| - 0.052 12.9 0.0 0.12 11.7 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family RsgA_GTPase PF03193.16 gi|134046673|ref|YP_001098158.1| - 0.076 12.9 0.3 0.21 11.5 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase TRCF PF03461.15 gi|134046673|ref|YP_001098158.1| - 0.099 13.0 0.3 0.28 11.6 0.3 1.8 1 0 0 1 1 1 0 TRCF domain HTH_27 PF13463.6 gi|134046673|ref|YP_001098158.1| - 0.15 12.6 0.0 0.73 10.4 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|134046674|ref|YP_001098159.1| - 5.7e-05 22.9 0.2 0.00012 21.9 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Dimerisation2 PF16864.5 gi|134046674|ref|YP_001098159.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain HTH_5 PF01022.20 gi|134046675|ref|YP_001098160.1| - 6e-06 26.0 0.2 2.7e-05 23.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|134046675|ref|YP_001098160.1| - 5.4e-05 23.0 0.2 0.00013 21.7 0.2 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.6 gi|134046675|ref|YP_001098160.1| - 0.00022 21.6 0.5 0.00098 19.5 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|134046675|ref|YP_001098160.1| - 0.00065 19.2 0.1 0.0024 17.4 0.1 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|134046675|ref|YP_001098160.1| - 0.00086 19.0 0.0 0.015 15.1 0.0 2.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|134046675|ref|YP_001098160.1| - 0.0028 17.4 0.0 0.0053 16.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain FUR PF01475.19 gi|134046675|ref|YP_001098160.1| - 0.0053 16.9 0.2 0.016 15.4 0.2 1.8 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_36 PF13730.6 gi|134046675|ref|YP_001098160.1| - 0.0074 16.2 0.9 0.48 10.4 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|134046675|ref|YP_001098160.1| - 0.0084 16.0 2.2 0.062 13.3 0.4 2.8 2 0 0 2 2 2 1 HTH domain HTH_29 PF13551.6 gi|134046675|ref|YP_001098160.1| - 0.0085 16.1 0.0 0.19 11.8 0.0 2.5 1 1 1 2 2 2 1 Winged helix-turn helix HTH_17 PF12728.7 gi|134046675|ref|YP_001098160.1| - 0.01 16.0 0.0 0.76 10.0 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|134046675|ref|YP_001098160.1| - 0.012 15.3 0.1 0.055 13.2 0.1 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_22 PF13309.6 gi|134046675|ref|YP_001098160.1| - 0.023 14.8 0.2 0.065 13.3 0.2 1.8 1 0 0 1 1 1 0 HTH domain Terminase_5 PF06056.12 gi|134046675|ref|YP_001098160.1| - 0.08 12.9 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_Crp_2 PF13545.6 gi|134046675|ref|YP_001098160.1| - 0.17 11.9 0.0 0.45 10.5 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MCM PF00493.23 gi|134046676|ref|YP_001098161.1| - 5.5e-74 248.0 0.6 8.3e-74 247.5 0.1 1.6 2 0 0 2 2 2 1 MCM P-loop domain MCM_lid PF17855.1 gi|134046676|ref|YP_001098161.1| - 1.5e-22 79.8 0.9 4e-22 78.4 0.9 1.8 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_OB PF17207.3 gi|134046676|ref|YP_001098161.1| - 2.5e-17 62.9 0.2 6.1e-17 61.6 0.2 1.7 1 0 0 1 1 1 1 MCM OB domain Mg_chelatase PF01078.21 gi|134046676|ref|YP_001098161.1| - 5.3e-07 29.2 0.1 0.00013 21.4 0.0 2.6 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|134046676|ref|YP_001098161.1| - 1.4e-06 28.3 0.0 6.6e-06 26.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|134046676|ref|YP_001098161.1| - 0.0049 16.6 0.0 0.087 12.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_3 PF07726.11 gi|134046676|ref|YP_001098161.1| - 0.024 14.5 0.0 0.082 12.8 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CobA_CobO_BtuR PF02572.15 gi|134046676|ref|YP_001098161.1| - 0.025 14.9 2.8 0.099 12.9 0.3 2.7 3 0 0 3 3 3 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_16 PF13191.6 gi|134046676|ref|YP_001098161.1| - 0.089 13.2 0.5 0.42 11.0 0.1 2.1 2 0 0 2 2 2 0 AAA ATPase domain zf-NADH-PPase PF09297.11 gi|134046676|ref|YP_001098161.1| - 0.092 12.4 0.2 0.61 9.8 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|134046676|ref|YP_001098161.1| - 0.093 12.7 0.5 0.21 11.6 0.5 1.5 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.7 gi|134046676|ref|YP_001098161.1| - 0.12 12.5 0.6 0.24 11.5 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|134046676|ref|YP_001098161.1| - 0.12 11.9 0.9 14 5.3 0.0 3.5 3 0 0 3 3 3 0 TFIIB zinc-binding Cas_NE0113 PF09623.10 gi|134046676|ref|YP_001098161.1| - 0.13 11.9 1.3 0.33 10.6 0.2 2.1 2 0 0 2 2 2 0 CRISPR-associated protein NE0113 (Cas_NE0113) Zn-ribbon_8 PF09723.10 gi|134046676|ref|YP_001098161.1| - 0.3 11.3 2.0 0.82 9.8 2.0 1.7 1 0 0 1 1 1 0 Zinc ribbon domain HNH_5 PF14279.6 gi|134046676|ref|YP_001098161.1| - 0.51 10.2 2.4 1.1 9.2 0.0 2.7 3 0 0 3 3 2 0 HNH endonuclease HHH_5 PF14520.6 gi|134046676|ref|YP_001098161.1| - 2 9.1 9.7 0.62 10.7 0.4 4.4 4 1 1 5 5 5 0 Helix-hairpin-helix domain Mnd1 PF03962.15 gi|134046676|ref|YP_001098161.1| - 9.6 6.6 10.4 1.6 9.0 1.4 3.8 3 1 0 3 3 3 0 Mnd1 HTH domain DUF4013 PF13197.6 gi|134046677|ref|YP_001098162.1| - 1.6e-34 119.1 23.9 1.6e-34 119.1 23.9 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF975 PF06161.11 gi|134046677|ref|YP_001098162.1| - 0.0004 20.2 8.4 0.0004 20.2 8.4 2.2 1 1 0 2 2 2 1 Protein of unknown function (DUF975) EI24 PF07264.11 gi|134046677|ref|YP_001098162.1| - 0.046 14.0 19.8 0.27 11.5 19.8 1.9 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) OPT PF03169.15 gi|134046677|ref|YP_001098162.1| - 0.094 11.3 19.5 0.36 9.4 5.6 2.2 2 0 0 2 2 2 0 OPT oligopeptide transporter protein DUF624 PF04854.14 gi|134046677|ref|YP_001098162.1| - 0.51 10.5 15.2 0.23 11.6 1.1 3.5 1 1 1 2 2 2 0 Protein of unknown function, DUF624 PRA1 PF03208.19 gi|134046677|ref|YP_001098162.1| - 1.6 8.4 15.0 0.11 12.1 2.1 2.8 1 1 1 2 2 2 0 PRA1 family protein zinc_ribbon_2 PF13240.6 gi|134046678|ref|YP_001098163.1| - 6.9e-07 28.8 3.6 1e-06 28.2 3.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|134046678|ref|YP_001098163.1| - 1.9e-05 23.9 2.5 2.9e-05 23.3 2.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|134046678|ref|YP_001098163.1| - 3.6e-05 23.7 0.6 4.8e-05 23.3 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-dskA_traR PF01258.17 gi|134046678|ref|YP_001098163.1| - 0.0016 18.4 6.1 0.25 11.3 1.6 2.2 1 1 1 2 2 2 2 Prokaryotic dksA/traR C4-type zinc finger zf-C4H2 PF10146.9 gi|134046678|ref|YP_001098163.1| - 0.006 16.9 1.4 0.0075 16.6 1.4 1.1 1 0 0 1 1 1 1 Zinc finger-containing protein TM2 PF05154.16 gi|134046678|ref|YP_001098163.1| - 0.0063 16.8 11.0 0.08 13.3 11.0 2.0 1 1 0 1 1 1 1 TM2 domain zinc_ribbon_15 PF17032.5 gi|134046678|ref|YP_001098163.1| - 0.0068 17.1 3.1 0.014 16.1 3.1 1.6 1 0 0 1 1 1 1 zinc-ribbon family UPF0547 PF10571.9 gi|134046678|ref|YP_001098163.1| - 0.011 15.7 4.8 0.025 14.7 4.8 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 GFA PF04828.14 gi|134046678|ref|YP_001098163.1| - 0.017 15.5 1.3 1.1 9.7 0.0 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.6 gi|134046678|ref|YP_001098163.1| - 0.029 14.3 3.8 2.2 8.3 4.2 2.3 1 1 1 2 2 2 0 Nudix N-terminal YhfH PF14149.6 gi|134046678|ref|YP_001098163.1| - 0.032 14.2 5.7 0.46 10.5 5.6 2.1 1 1 1 2 2 2 0 YhfH-like protein zf-C3HC4_3 PF13920.6 gi|134046678|ref|YP_001098163.1| - 0.047 13.5 1.6 0.066 13.1 1.6 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DNA_RNApol_7kD PF03604.13 gi|134046678|ref|YP_001098163.1| - 0.047 13.4 2.4 0.098 12.4 2.4 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF1272 PF06906.11 gi|134046678|ref|YP_001098163.1| - 0.053 13.6 1.6 0.074 13.2 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) HypA PF01155.19 gi|134046678|ref|YP_001098163.1| - 0.056 13.5 1.2 0.079 13.0 1.2 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1936 PF09151.10 gi|134046678|ref|YP_001098163.1| - 0.066 13.1 3.8 0.27 11.2 0.5 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) zf-NADH-PPase PF09297.11 gi|134046678|ref|YP_001098163.1| - 0.067 12.9 2.2 1 9.1 2.3 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf_UBZ PF18439.1 gi|134046678|ref|YP_001098163.1| - 0.073 12.7 4.5 0.22 11.1 0.4 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF2321 PF10083.9 gi|134046678|ref|YP_001098163.1| - 0.15 11.7 0.5 0.2 11.3 0.5 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) Rubredoxin_2 PF18073.1 gi|134046678|ref|YP_001098163.1| - 0.16 11.8 1.0 0.27 11.0 1.0 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain zf-C3HC4 PF00097.25 gi|134046678|ref|YP_001098163.1| - 0.17 11.8 3.9 0.26 11.2 3.9 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.6 gi|134046678|ref|YP_001098163.1| - 0.2 11.6 2.5 0.29 11.1 2.5 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C3HC4_2 PF13923.6 gi|134046678|ref|YP_001098163.1| - 0.25 11.2 2.9 0.38 10.6 2.9 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Auto_anti-p27 PF06677.12 gi|134046678|ref|YP_001098163.1| - 0.29 11.3 2.1 0.41 10.9 0.1 1.9 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ACC PF17848.1 gi|134046678|ref|YP_001098163.1| - 0.41 10.8 3.3 2.7 8.2 3.3 2.0 1 1 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain zf-LITAF-like PF10601.9 gi|134046678|ref|YP_001098163.1| - 0.74 10.1 5.0 2.9 8.2 1.2 2.8 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain DHHC PF01529.20 gi|134046678|ref|YP_001098163.1| - 0.86 9.7 5.4 3.8 7.6 0.5 2.2 2 0 0 2 2 2 0 DHHC palmitoyltransferase Zn-ribbon_8 PF09723.10 gi|134046678|ref|YP_001098163.1| - 0.93 9.7 3.9 3.2 7.9 3.9 1.8 1 1 0 1 1 1 0 Zinc ribbon domain ADK_lid PF05191.14 gi|134046678|ref|YP_001098163.1| - 2.1 8.4 4.2 45 4.1 4.0 2.4 1 1 1 2 2 2 0 Adenylate kinase, active site lid NOB1_Zn_bind PF08772.11 gi|134046678|ref|YP_001098163.1| - 2.1 8.6 4.4 5.6 7.2 0.6 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like PhnA_Zn_Ribbon PF08274.12 gi|134046678|ref|YP_001098163.1| - 7.1 6.7 6.7 8.7 6.4 0.9 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon AAA_26 PF13500.6 gi|134046679|ref|YP_001098164.1| - 3.9e-09 36.6 0.8 6.3e-06 26.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain GATase_3 PF07685.14 gi|134046679|ref|YP_001098164.1| - 8.8e-08 32.0 0.0 1.6e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|134046679|ref|YP_001098164.1| - 3.7e-05 23.8 1.9 0.00035 20.6 0.2 2.7 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ResIII PF04851.15 gi|134046679|ref|YP_001098164.1| - 0.0035 17.4 0.2 0.0082 16.2 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNO PF01174.19 gi|134046679|ref|YP_001098164.1| - 0.024 14.5 0.0 0.06 13.2 0.0 1.6 1 0 0 1 1 1 0 SNO glutamine amidotransferase family TrkA_N PF02254.18 gi|134046680|ref|YP_001098165.1| - 2e-27 95.8 0.3 3.3e-27 95.1 0.3 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|134046680|ref|YP_001098165.1| - 4.1e-16 58.7 14.4 7.8e-16 57.8 14.4 1.4 1 0 0 1 1 1 1 Ion channel TrkA_C PF02080.21 gi|134046680|ref|YP_001098165.1| - 1.9e-15 56.4 0.0 4.7e-15 55.2 0.0 1.7 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_10 PF13460.6 gi|134046680|ref|YP_001098165.1| - 0.00057 19.8 0.0 0.00089 19.2 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding 2-Hacid_dh_C PF02826.19 gi|134046680|ref|YP_001098165.1| - 0.016 14.5 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|134046680|ref|YP_001098165.1| - 0.023 15.0 0.1 0.066 13.5 0.0 1.8 1 1 1 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Ion_trans PF00520.31 gi|134046680|ref|YP_001098165.1| - 0.056 12.7 11.4 0.21 10.8 11.1 2.0 2 1 0 2 2 2 0 Ion transport protein Gp_dh_N PF00044.24 gi|134046680|ref|YP_001098165.1| - 0.1 12.9 0.0 0.24 11.8 0.0 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PolC_DP2 PF03833.13 gi|134046682|ref|YP_001098167.1| - 0 1197.4 0.3 0 1194.3 0.3 2.0 1 1 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-ribbon_3 PF13248.6 gi|134046682|ref|YP_001098167.1| - 1.4 8.4 4.4 5.2 6.6 0.7 2.7 2 0 0 2 2 2 0 zinc-ribbon domain YbjQ_1 PF01906.17 gi|134046683|ref|YP_001098168.1| - 8.9e-14 52.0 0.3 1.4e-07 32.0 0.0 2.1 1 1 1 2 2 2 2 Putative heavy-metal-binding ECF_trnsprt PF12822.7 gi|134046684|ref|YP_001098169.1| - 1.7e-08 34.7 25.4 2.3e-08 34.3 25.4 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component 5TM-5TMR_LYT PF07694.12 gi|134046684|ref|YP_001098169.1| - 0.097 12.2 14.7 0.11 12.0 13.9 1.6 1 1 0 1 1 1 0 5TMR of 5TMR-LYT CbiM PF01891.16 gi|134046684|ref|YP_001098169.1| - 0.81 9.5 14.1 1.6 8.5 14.2 1.4 1 1 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region MreD PF04093.12 gi|134046684|ref|YP_001098169.1| - 1.7 8.7 19.8 0.21 11.7 12.2 2.1 1 1 1 2 2 2 0 rod shape-determining protein MreD DUF1269 PF06897.12 gi|134046684|ref|YP_001098169.1| - 1.9 8.8 4.7 1.8 8.9 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Romo1 PF10247.9 gi|134046684|ref|YP_001098169.1| - 3 8.3 7.0 0.33 11.4 0.7 2.5 3 0 0 3 3 3 0 Reactive mitochondrial oxygen species modulator 1 AAA PF00004.29 gi|134046686|ref|YP_001098171.1| - 7.7e-37 126.7 0.0 1.3e-36 125.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.14 gi|134046686|ref|YP_001098171.1| - 1.7e-09 38.0 0.1 3.7e-09 36.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|134046686|ref|YP_001098171.1| - 8.4e-07 28.5 0.0 1.1e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain RuvB_N PF05496.12 gi|134046686|ref|YP_001098171.1| - 1.4e-06 28.2 0.0 3.7e-06 26.8 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|134046686|ref|YP_001098171.1| - 3.1e-05 23.3 0.0 0.0015 17.7 0.0 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|134046686|ref|YP_001098171.1| - 0.00013 21.9 0.1 0.00048 20.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|134046686|ref|YP_001098171.1| - 0.00014 22.3 0.0 0.018 15.4 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|134046686|ref|YP_001098171.1| - 0.00036 20.0 0.0 0.00081 18.8 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|134046686|ref|YP_001098171.1| - 0.00073 19.8 0.0 0.0022 18.2 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.6 gi|134046686|ref|YP_001098171.1| - 0.001 19.4 0.2 0.03 14.6 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|134046686|ref|YP_001098171.1| - 0.0013 18.9 0.0 0.0022 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.18 gi|134046686|ref|YP_001098171.1| - 0.0021 18.0 0.3 0.0096 15.8 0.3 1.9 1 1 0 1 1 1 1 Bacterial dnaA protein IstB_IS21 PF01695.17 gi|134046686|ref|YP_001098171.1| - 0.0043 16.8 0.0 0.0071 16.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|134046686|ref|YP_001098171.1| - 0.0077 16.0 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|134046686|ref|YP_001098171.1| - 0.0088 16.6 0.0 0.02 15.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|134046686|ref|YP_001098171.1| - 0.018 14.6 0.0 0.24 10.9 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|134046686|ref|YP_001098171.1| - 0.018 14.1 0.0 0.035 13.2 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.26 gi|134046686|ref|YP_001098171.1| - 0.026 14.2 0.0 0.4 10.4 0.0 2.2 1 1 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|134046686|ref|YP_001098171.1| - 0.035 14.5 0.0 0.072 13.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_lid_3 PF17862.1 gi|134046686|ref|YP_001098171.1| - 0.039 13.8 0.0 0.084 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA+ lid domain NACHT PF05729.12 gi|134046686|ref|YP_001098171.1| - 0.046 13.6 0.0 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|134046686|ref|YP_001098171.1| - 0.06 12.6 0.0 0.17 11.1 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.6 gi|134046686|ref|YP_001098171.1| - 0.074 12.6 0.0 0.24 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|134046686|ref|YP_001098171.1| - 0.091 12.8 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|134046686|ref|YP_001098171.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|134046686|ref|YP_001098171.1| - 0.16 11.2 0.0 0.37 10.0 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SDH_sah PF01972.16 gi|134046687|ref|YP_001098172.1| - 4.2e-136 452.6 1.5 5e-136 452.3 1.5 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|134046687|ref|YP_001098172.1| - 8.2e-06 25.8 0.5 1.6e-05 24.9 0.1 1.6 2 0 0 2 2 2 1 Clp protease ECH_1 PF00378.20 gi|134046687|ref|YP_001098172.1| - 0.00088 18.7 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|134046687|ref|YP_001098172.1| - 0.0019 18.2 0.1 0.0032 17.4 0.1 1.4 1 0 0 1 1 1 1 Peptidase family S49 DUF192 PF02643.15 gi|134046688|ref|YP_001098173.1| - 2.7e-15 56.3 0.0 3.1e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF2121 PF09894.9 gi|134046689|ref|YP_001098174.1| - 1.3e-63 214.1 10.0 1.3e-63 214.1 10.0 2.1 2 1 1 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2121) Lipase_3 PF01764.25 gi|134046689|ref|YP_001098174.1| - 0.053 13.4 0.4 0.14 12.0 0.3 1.8 1 1 0 1 1 1 0 Lipase (class 3) NikR_C PF08753.11 gi|134046690|ref|YP_001098175.1| - 2.8e-34 117.1 7.3 4e-34 116.6 7.3 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|134046690|ref|YP_001098175.1| - 2.9e-11 42.9 0.7 5.7e-11 41.9 0.7 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|134046690|ref|YP_001098175.1| - 0.00087 19.5 0.1 0.0014 18.8 0.1 1.5 1 1 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family HicB_lk_antitox PF15919.5 gi|134046690|ref|YP_001098175.1| - 0.0045 17.1 0.1 0.018 15.2 0.0 1.9 2 0 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 gi|134046690|ref|YP_001098175.1| - 0.12 12.3 0.0 0.33 10.9 0.0 1.7 2 0 0 2 2 2 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 DUF2798 PF11391.8 gi|134046691|ref|YP_001098176.1| - 6.7e-18 64.5 6.6 7.9e-18 64.2 6.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2798) HTH_1 PF00126.27 gi|134046692|ref|YP_001098177.1| - 1.3e-07 31.5 0.0 2.2e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family GerE PF00196.19 gi|134046692|ref|YP_001098177.1| - 8.6e-07 28.4 0.5 1.7e-06 27.5 0.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|134046692|ref|YP_001098177.1| - 2.3e-05 23.8 0.2 5.3e-05 22.7 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|134046692|ref|YP_001098177.1| - 0.00024 20.8 0.0 0.00087 19.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 gi|134046692|ref|YP_001098177.1| - 0.0013 18.4 0.3 0.0035 17.1 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|134046692|ref|YP_001098177.1| - 0.015 15.3 0.2 0.16 12.1 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|134046692|ref|YP_001098177.1| - 0.024 14.2 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|134046692|ref|YP_001098177.1| - 0.024 14.3 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|134046692|ref|YP_001098177.1| - 0.024 14.0 0.0 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Fe_dep_repress PF01325.19 gi|134046692|ref|YP_001098177.1| - 0.058 13.6 0.1 0.15 12.3 0.1 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain CENP-B_N PF04218.13 gi|134046692|ref|YP_001098177.1| - 0.058 13.0 0.1 0.13 11.9 0.1 1.6 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_28 PF13518.6 gi|134046692|ref|YP_001098177.1| - 0.06 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|134046692|ref|YP_001098177.1| - 0.13 12.1 0.0 0.35 10.8 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Radical_SAM PF04055.21 gi|134046693|ref|YP_001098178.1| - 1.3e-09 38.7 0.7 9.1e-09 35.9 0.7 2.2 1 1 0 1 1 1 1 Radical SAM superfamily VHS PF00790.19 gi|134046693|ref|YP_001098178.1| - 0.0066 16.3 0.4 0.014 15.2 0.4 1.5 1 0 0 1 1 1 1 VHS domain Sec20 PF03908.13 gi|134046693|ref|YP_001098178.1| - 0.07 13.1 1.1 1.4 8.9 0.7 2.5 2 0 0 2 2 2 0 Sec20 UPF0113 PF03657.13 gi|134046694|ref|YP_001098179.1| - 1.1e-19 70.5 0.8 2e-19 69.6 0.8 1.5 1 0 0 1 1 1 1 UPF0113 PUA domain UPF0113_N PF17833.1 gi|134046694|ref|YP_001098179.1| - 1.8e-09 38.0 0.8 1.8e-09 38.0 0.8 2.3 2 1 0 2 2 2 1 UPF0113 Pre-PUA domain Methyltranf_PUA PF13636.6 gi|134046694|ref|YP_001098179.1| - 0.017 15.1 0.5 0.037 14.0 0.5 1.7 1 1 0 1 1 1 0 RNA-binding PUA-like domain of methyltransferase RsmF DUF1296 PF06972.11 gi|134046695|ref|YP_001098180.1| - 3 8.1 5.9 0.95 9.6 0.4 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1296) TruD PF01142.18 gi|134046696|ref|YP_001098181.1| - 1.9e-75 254.3 1.2 3.6e-75 253.4 1.2 1.4 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) ATP13 PF12921.7 gi|134046696|ref|YP_001098181.1| - 0.0012 18.7 0.6 0.0024 17.7 0.6 1.5 1 0 0 1 1 1 1 Mitochondrial ATPase expression P4Ha_N PF08336.11 gi|134046696|ref|YP_001098181.1| - 0.05 13.6 2.6 3.5 7.6 0.1 2.5 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Lyase_1 PF00206.20 gi|134046697|ref|YP_001098182.1| - 9.1e-62 209.2 0.8 9.1e-62 209.2 0.8 1.6 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.6 gi|134046697|ref|YP_001098182.1| - 2.7e-17 63.3 0.0 2.1e-16 60.4 0.0 2.5 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal DUF1002 PF06207.11 gi|134046697|ref|YP_001098182.1| - 0.00099 18.7 1.9 0.00099 18.7 1.9 2.9 2 1 0 2 2 2 1 Protein of unknown function (DUF1002) Baculo_PEP_C PF04513.12 gi|134046697|ref|YP_001098182.1| - 0.25 11.4 3.1 36 4.4 0.1 3.7 3 1 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus REC1 PF18501.1 gi|134046697|ref|YP_001098182.1| - 0.25 11.2 4.1 0.33 10.8 1.1 2.7 2 1 0 2 2 2 0 Alpha helical recognition lobe domain ASL_C PF08328.11 gi|134046697|ref|YP_001098182.1| - 0.35 11.0 2.8 0.45 10.6 0.6 2.4 2 1 0 2 2 2 0 Adenylosuccinate lyase C-terminal Phage_holin_6_1 PF09682.10 gi|134046697|ref|YP_001098182.1| - 0.88 10.0 6.9 1.5 9.3 0.6 2.7 2 1 0 2 2 2 0 Bacteriophage holin of superfamily 6 (Holin_LLH) CoA_binding_2 PF13380.6 gi|134046698|ref|YP_001098183.1| - 1e-28 100.1 0.0 1.2e-28 99.9 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|134046698|ref|YP_001098183.1| - 1.5e-08 35.2 0.0 1.8e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|134046698|ref|YP_001098183.1| - 0.042 14.7 0.0 0.17 12.7 0.0 2.1 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DNA_methylase PF00145.17 gi|134046699|ref|YP_001098184.1| - 1.1e-47 163.1 4.9 8.2e-22 78.0 1.2 3.0 1 1 1 3 3 3 3 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|134046699|ref|YP_001098184.1| - 0.00084 19.0 0.1 0.0025 17.4 0.1 1.8 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Lys-AminoMut_A PF09043.11 gi|134046699|ref|YP_001098184.1| - 0.026 13.0 0.0 0.042 12.3 0.0 1.2 1 0 0 1 1 1 0 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit PBP_dimer PF03717.15 gi|134046699|ref|YP_001098184.1| - 0.086 13.2 0.8 0.17 12.2 0.8 1.4 1 0 0 1 1 1 0 Penicillin-binding Protein dimerisation domain Imm59 PF15597.6 gi|134046699|ref|YP_001098184.1| - 0.34 11.4 4.4 0.48 10.9 0.1 2.5 2 0 0 2 2 2 0 Immunity protein 59 DUF2122 PF09895.9 gi|134046700|ref|YP_001098185.1| - 1.8e-33 115.1 0.1 2.2e-33 114.8 0.1 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) DNA_primase_lrg PF04104.14 gi|134046701|ref|YP_001098186.1| - 1.1e-33 116.8 0.3 2.4e-33 115.7 0.3 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit ATC_hydrolase PF14196.6 gi|134046701|ref|YP_001098186.1| - 0.02 15.6 0.1 0.058 14.2 0.1 1.7 1 0 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Ntox14 PF15522.6 gi|134046701|ref|YP_001098186.1| - 0.16 11.4 0.1 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 Novel toxin 14 DNA_pol_E_B PF04042.16 gi|134046702|ref|YP_001098187.1| - 8.8e-11 41.5 0.0 1.5e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|134046702|ref|YP_001098187.1| - 2.8e-10 41.1 0.9 2.8e-10 41.1 0.9 2.2 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|134046702|ref|YP_001098187.1| - 4.5e-05 23.7 0.0 0.00011 22.4 0.0 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TetR_C_10 PF16295.5 gi|134046702|ref|YP_001098187.1| - 0.017 15.4 2.6 1.1 9.6 1.1 2.5 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain PcrB PF01884.17 gi|134046703|ref|YP_001098188.1| - 2e-72 243.3 3.5 2.3e-72 243.1 3.5 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|134046703|ref|YP_001098188.1| - 6.8e-07 29.0 0.3 2.1e-06 27.4 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|134046703|ref|YP_001098188.1| - 0.00013 21.4 1.0 0.00024 20.4 0.1 1.8 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NanE PF04131.14 gi|134046703|ref|YP_001098188.1| - 0.011 14.9 1.5 0.097 11.8 0.1 2.6 3 0 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase Chordopox_A20R PF05941.13 gi|134046703|ref|YP_001098188.1| - 0.09 11.8 0.0 0.13 11.2 0.0 1.4 1 0 0 1 1 1 0 Chordopoxvirus A20R protein DHQS PF01959.16 gi|134046704|ref|YP_001098189.1| - 5.2e-143 476.2 5.2 5.8e-143 476.0 5.2 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II DUF1953 PF09196.10 gi|134046704|ref|YP_001098189.1| - 0.023 14.5 0.4 0.96 9.3 0.0 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1953) Hint PF01079.20 gi|134046704|ref|YP_001098189.1| - 0.061 12.8 0.0 0.22 11.0 0.0 1.9 2 0 0 2 2 2 0 Hint module DUF2254 PF10011.9 gi|134046705|ref|YP_001098190.1| - 1.2e-11 44.1 2.1 1.7e-11 43.5 2.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) OSCP PF00213.18 gi|134046705|ref|YP_001098190.1| - 0.0067 16.6 0.2 0.015 15.4 0.2 1.5 1 0 0 1 1 1 1 ATP synthase delta (OSCP) subunit PHO4 PF01384.20 gi|134046705|ref|YP_001098190.1| - 0.01 14.9 0.2 0.011 14.8 0.2 1.2 1 0 0 1 1 1 0 Phosphate transporter family RIO1 PF01163.22 gi|134046706|ref|YP_001098191.1| - 6e-42 143.4 0.2 5.5e-41 140.2 0.2 2.0 1 1 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|134046706|ref|YP_001098191.1| - 1.1e-17 64.0 0.0 2.6e-17 62.8 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|134046706|ref|YP_001098191.1| - 2.4e-06 27.7 0.2 0.00039 20.4 0.1 2.5 2 1 1 3 3 3 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|134046706|ref|YP_001098191.1| - 2.6e-06 27.0 0.3 2e-05 24.1 0.3 2.0 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|134046706|ref|YP_001098191.1| - 0.011 15.2 0.2 0.14 11.5 0.2 2.4 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|134046706|ref|YP_001098191.1| - 0.095 11.5 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 Fungal protein kinase Fungal_KA1 PF16797.5 gi|134046706|ref|YP_001098191.1| - 0.15 11.8 0.0 0.55 9.9 0.0 1.9 2 0 0 2 2 2 0 Fungal kinase associated-1 domain POR_N PF01855.19 gi|134046707|ref|YP_001098192.1| - 5.6e-76 255.3 0.1 7.4e-76 254.9 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|134046707|ref|YP_001098192.1| - 3.9e-17 62.4 0.0 7.1e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|134046707|ref|YP_001098192.1| - 0.0065 16.1 0.1 0.013 15.1 0.1 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Dak1 PF02733.17 gi|134046707|ref|YP_001098192.1| - 0.24 10.2 0.6 0.77 8.6 0.0 2.1 3 1 1 4 4 4 0 Dak1 domain SelA PF03841.13 gi|134046708|ref|YP_001098193.1| - 2.9e-06 26.6 0.0 4.4e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_1_2 PF00155.21 gi|134046708|ref|YP_001098193.1| - 4.7e-05 22.7 0.0 7.9e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|134046708|ref|YP_001098193.1| - 0.089 11.3 0.0 0.25 9.8 0.0 1.7 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme DMRL_synthase PF00885.19 gi|134046708|ref|YP_001098193.1| - 0.09 12.6 0.0 0.65 9.8 0.0 2.3 3 0 0 3 3 3 0 6,7-dimethyl-8-ribityllumazine synthase Exop_C PF18559.1 gi|134046708|ref|YP_001098193.1| - 0.15 12.0 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Galactose-binding domain-like DUF2098 PF09871.9 gi|134046709|ref|YP_001098194.1| - 6.8e-20 71.2 0.4 7.5e-20 71.1 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) YdfZ PF14001.6 gi|134046709|ref|YP_001098194.1| - 0.017 15.5 0.0 0.031 14.7 0.0 1.4 1 0 0 1 1 1 0 YdfZ protein HAS-barrel PF09378.10 gi|134046709|ref|YP_001098194.1| - 0.052 13.7 2.1 0.12 12.6 2.1 1.6 1 1 0 1 1 1 0 HAS barrel domain His_biosynth PF00977.21 gi|134046710|ref|YP_001098195.1| - 9.6e-89 296.8 1.6 1.1e-88 296.5 1.6 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|134046710|ref|YP_001098195.1| - 3.2e-09 36.6 0.2 9.3e-06 25.3 0.0 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|134046710|ref|YP_001098195.1| - 1.4e-05 24.6 0.2 0.0081 15.6 0.1 2.3 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|134046710|ref|YP_001098195.1| - 3.5e-05 23.0 0.3 0.17 10.9 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 gi|134046710|ref|YP_001098195.1| - 0.0001 21.7 0.2 0.29 10.4 0.0 2.4 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|134046710|ref|YP_001098195.1| - 0.00013 21.3 0.1 0.065 12.4 0.0 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.17 gi|134046710|ref|YP_001098195.1| - 0.0002 20.6 0.1 0.0041 16.2 0.0 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 gi|134046710|ref|YP_001098195.1| - 0.00069 19.0 0.2 1.1 8.5 0.1 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase AAA_31 PF13614.6 gi|134046711|ref|YP_001098196.1| - 9e-13 48.5 0.4 1.5e-12 47.8 0.4 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|134046711|ref|YP_001098196.1| - 7.7e-12 45.4 0.1 9.2e-11 41.9 0.1 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|134046711|ref|YP_001098196.1| - 7.7e-09 35.4 0.1 1.2e-08 34.7 0.1 1.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|134046711|ref|YP_001098196.1| - 0.00014 21.2 2.1 0.033 13.4 0.0 2.6 2 1 0 2 2 2 2 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|134046711|ref|YP_001098196.1| - 0.0022 17.5 0.2 0.081 12.4 0.1 2.6 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|134046711|ref|YP_001098196.1| - 0.048 13.5 0.1 0.17 11.6 0.1 2.0 1 1 1 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MipZ PF09140.11 gi|134046711|ref|YP_001098196.1| - 0.088 12.1 0.2 1 8.6 0.2 2.2 1 1 0 1 1 1 0 ATPase MipZ DUF4945 PF16303.5 gi|134046713|ref|YP_001098198.1| - 0.0005 20.0 0.2 0.01 15.8 0.1 3.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4945) DUF1495 PF07381.11 gi|134046714|ref|YP_001098199.1| - 2e-36 123.7 0.4 2.2e-36 123.5 0.4 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|134046714|ref|YP_001098199.1| - 0.029 14.1 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Methyltransf_31 PF13847.6 gi|134046715|ref|YP_001098200.1| - 2.5e-14 53.3 0.0 4e-14 52.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|134046715|ref|YP_001098200.1| - 2e-11 44.5 0.0 4.2e-11 43.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|134046715|ref|YP_001098200.1| - 1.2e-10 41.9 0.0 2.7e-10 40.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|134046715|ref|YP_001098200.1| - 6.4e-10 39.6 0.0 1.1e-09 38.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|134046715|ref|YP_001098200.1| - 1.6e-08 34.2 1.1 6.8e-08 32.1 0.2 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|134046715|ref|YP_001098200.1| - 3.7e-07 30.1 0.0 5.4e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|134046715|ref|YP_001098200.1| - 4e-07 30.0 0.0 8.3e-07 29.0 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|134046715|ref|YP_001098200.1| - 3e-06 26.8 0.1 4.7e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|134046715|ref|YP_001098200.1| - 3.4e-06 26.7 0.0 5.6e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|134046715|ref|YP_001098200.1| - 0.00023 20.7 0.1 0.021 14.3 0.0 2.3 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|134046715|ref|YP_001098200.1| - 0.0082 15.4 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain PrmA PF06325.13 gi|134046715|ref|YP_001098200.1| - 0.04 13.3 0.0 0.056 12.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) GCD14 PF08704.10 gi|134046715|ref|YP_001098200.1| - 0.15 11.7 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit HMD PF03201.16 gi|134046716|ref|YP_001098201.1| - 4.8e-40 135.7 3.8 5.2e-40 135.6 2.4 1.8 2 0 0 2 2 2 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.15 gi|134046716|ref|YP_001098201.1| - 9.1e-06 25.9 0.1 2.4e-05 24.5 0.1 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|134046716|ref|YP_001098201.1| - 0.0071 15.9 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|134046716|ref|YP_001098201.1| - 0.079 12.8 0.8 2.6 7.9 0.1 2.8 1 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GTP_EFTU PF00009.27 gi|134046717|ref|YP_001098202.1| - 5.9e-16 58.6 0.3 2e-13 50.3 0.3 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|134046717|ref|YP_001098202.1| - 2.2e-12 47.0 0.1 3.1e-12 46.6 0.1 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|134046717|ref|YP_001098202.1| - 1.6e-09 37.6 0.1 2.1e-09 37.2 0.1 1.3 1 1 0 1 1 1 1 Ras family Roc PF08477.13 gi|134046717|ref|YP_001098202.1| - 3.8e-09 36.8 0.0 5.4e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Arf PF00025.21 gi|134046717|ref|YP_001098202.1| - 7.3e-09 35.3 0.7 1.8e-08 34.1 0.7 1.5 1 1 0 1 1 1 1 ADP-ribosylation factor family FeoB_N PF02421.18 gi|134046717|ref|YP_001098202.1| - 3.5e-07 29.9 1.9 2.6e-06 27.1 1.9 1.9 1 1 0 1 1 1 1 Ferrous iron transport protein B ATP_bind_1 PF03029.17 gi|134046717|ref|YP_001098202.1| - 1.9e-06 27.9 0.3 0.00026 20.8 0.1 2.7 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|134046717|ref|YP_001098202.1| - 2.3e-05 24.4 0.2 0.058 13.3 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase PduV-EutP PF10662.9 gi|134046717|ref|YP_001098202.1| - 0.00022 21.0 1.6 0.0012 18.6 1.6 2.0 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Gtr1_RagA PF04670.12 gi|134046717|ref|YP_001098202.1| - 0.00048 19.6 0.0 0.44 9.9 0.0 2.1 2 0 0 2 2 2 2 Gtr1/RagA G protein conserved region AAA_24 PF13479.6 gi|134046717|ref|YP_001098202.1| - 0.002 17.9 0.1 0.0028 17.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|134046717|ref|YP_001098202.1| - 0.0055 16.6 0.1 0.009 15.9 0.1 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 gi|134046717|ref|YP_001098202.1| - 0.011 16.0 0.0 0.014 15.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|134046717|ref|YP_001098202.1| - 0.014 15.4 0.1 0.017 15.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|134046717|ref|YP_001098202.1| - 0.021 14.8 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|134046717|ref|YP_001098202.1| - 0.028 14.1 0.1 0.13 11.9 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SRPRB PF09439.10 gi|134046717|ref|YP_001098202.1| - 0.032 13.7 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit RNA_helicase PF00910.22 gi|134046717|ref|YP_001098202.1| - 0.032 14.6 0.0 0.057 13.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|134046717|ref|YP_001098202.1| - 0.039 14.5 1.0 0.77 10.3 1.0 2.1 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|134046717|ref|YP_001098202.1| - 0.073 12.0 0.1 0.65 8.9 0.1 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Robl_LC7 PF03259.17 gi|134046718|ref|YP_001098203.1| - 4.6e-20 71.2 0.5 5.7e-20 70.9 0.5 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|134046718|ref|YP_001098203.1| - 0.0049 16.7 0.1 0.006 16.4 0.1 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting Aminotran_5 PF00266.19 gi|134046719|ref|YP_001098204.1| - 0.00052 19.1 0.0 0.00067 18.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|134046719|ref|YP_001098204.1| - 0.0037 16.5 0.0 0.0058 15.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II LysR_substrate PF03466.20 gi|134046720|ref|YP_001098205.1| - 9e-40 136.3 0.0 1.1e-39 136.0 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 gi|134046720|ref|YP_001098205.1| - 1.5e-15 56.9 0.0 2.7e-15 56.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family PBP_like PF12727.7 gi|134046720|ref|YP_001098205.1| - 3e-05 23.2 0.0 9e-05 21.7 0.0 1.8 1 1 0 1 1 1 1 PBP superfamily domain PBP_like_2 PF12849.7 gi|134046720|ref|YP_001098205.1| - 0.0002 21.2 0.0 0.00094 18.9 0.0 2.1 1 1 0 1 1 1 1 PBP superfamily domain HTH_5 PF01022.20 gi|134046720|ref|YP_001098205.1| - 0.003 17.4 0.0 0.008 16.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|134046720|ref|YP_001098205.1| - 0.0067 16.5 0.0 0.02 15.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_50 PF18024.1 gi|134046720|ref|YP_001098205.1| - 0.022 14.4 0.1 0.05 13.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|134046720|ref|YP_001098205.1| - 0.024 15.1 0.1 0.075 13.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|134046720|ref|YP_001098205.1| - 0.052 13.5 0.0 0.24 11.3 0.0 2.2 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.6 gi|134046720|ref|YP_001098205.1| - 0.064 12.8 0.0 0.17 11.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF1805 PF08827.11 gi|134046720|ref|YP_001098205.1| - 0.14 12.5 0.0 1.8 9.0 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1805) PCNA_N PF00705.18 gi|134046721|ref|YP_001098206.1| - 5.4e-20 71.4 0.8 5.4e-20 71.4 0.8 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|134046721|ref|YP_001098206.1| - 6.3e-17 62.0 0.7 7.8e-15 55.2 0.1 2.4 3 0 0 3 3 3 2 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|134046721|ref|YP_001098206.1| - 4.5e-12 46.0 0.1 6.1e-12 45.5 0.1 1.2 1 0 0 1 1 1 1 Rad9 NdhM PF10664.9 gi|134046721|ref|YP_001098206.1| - 0.091 13.0 0.8 0.5 10.6 0.1 2.5 2 1 1 3 3 3 0 Cyanobacterial and plastid NDH-1 subunit M Fe-S_biosyn PF01521.20 gi|134046721|ref|YP_001098206.1| - 0.14 12.4 2.1 0.39 10.9 0.5 2.2 1 1 1 2 2 2 0 Iron-sulphur cluster biosynthesis DAN PF03045.15 gi|134046722|ref|YP_001098207.1| - 0.098 12.7 0.2 0.14 12.2 0.2 1.4 1 0 0 1 1 1 0 DAN domain Ribosomal_L44 PF00935.19 gi|134046723|ref|YP_001098208.1| - 2.6e-28 98.3 1.6 3.1e-28 98.1 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|134046723|ref|YP_001098208.1| - 0.0013 18.1 1.8 0.63 9.5 0.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Ribosomal_L33 PF00471.20 gi|134046723|ref|YP_001098208.1| - 0.0015 19.0 4.8 0.0029 18.0 1.5 2.3 2 0 0 2 2 2 1 Ribosomal protein L33 zf-H2C2_2 PF13465.6 gi|134046723|ref|YP_001098208.1| - 0.037 14.5 4.2 2.5 8.7 0.2 2.5 2 0 0 2 2 2 0 Zinc-finger double domain DZR PF12773.7 gi|134046723|ref|YP_001098208.1| - 0.038 14.0 1.1 0.077 13.0 1.1 1.5 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|134046723|ref|YP_001098208.1| - 0.041 13.8 5.4 2.5 8.2 2.2 2.3 2 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|134046723|ref|YP_001098208.1| - 0.17 12.8 3.0 4.8 8.3 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ISL3 PF14690.6 gi|134046723|ref|YP_001098208.1| - 0.22 12.2 5.6 7 7.4 1.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf_UBZ PF18439.1 gi|134046723|ref|YP_001098208.1| - 0.22 11.1 2.4 2 8.1 0.4 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-LITAF-like PF10601.9 gi|134046723|ref|YP_001098208.1| - 0.22 11.8 2.4 3.2 8.1 0.2 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-C2H2 PF00096.26 gi|134046723|ref|YP_001098208.1| - 0.31 11.6 4.9 4.5 7.9 0.4 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type TFIIS_C PF01096.18 gi|134046723|ref|YP_001098208.1| - 0.52 10.2 6.0 5.6 6.9 0.2 2.7 2 1 1 3 3 3 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.6 gi|134046723|ref|YP_001098208.1| - 0.79 9.5 6.9 8.3 6.3 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|134046724|ref|YP_001098209.1| - 1.3e-20 72.9 3.2 1.4e-20 72.8 3.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zinc_ribbon_4 PF13717.6 gi|134046724|ref|YP_001098209.1| - 0.032 14.1 3.6 3.3 7.7 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_6 PF14599.6 gi|134046724|ref|YP_001098209.1| - 0.17 11.9 3.4 0.25 11.4 3.4 1.4 1 1 0 1 1 1 0 Zinc-ribbon zinc_ribbon_5 PF13719.6 gi|134046724|ref|YP_001098209.1| - 4.5 7.1 8.2 23 4.9 0.4 2.3 1 1 1 2 2 2 0 zinc-ribbon domain EIF_2_alpha PF07541.12 gi|134046725|ref|YP_001098210.1| - 2.2e-23 82.6 0.3 9.4e-23 80.5 0.0 1.9 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|134046725|ref|YP_001098210.1| - 6.7e-15 55.2 0.5 1.7e-14 53.9 0.5 1.7 1 0 0 1 1 1 1 S1 RNA binding domain EXOSC1 PF10447.9 gi|134046725|ref|YP_001098210.1| - 0.001 19.7 0.1 0.0042 17.7 0.1 2.0 1 1 0 1 1 1 1 Exosome component EXOSC1/CSL4 HTH_56 PF18662.1 gi|134046725|ref|YP_001098210.1| - 0.069 13.2 0.2 0.34 11.0 0.0 2.1 2 0 0 2 2 2 0 Cch helix turn helix domain HNOB PF07700.15 gi|134046725|ref|YP_001098210.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Haem-NO-binding NRBF2_MIT PF17169.4 gi|134046725|ref|YP_001098210.1| - 0.13 12.5 1.0 0.22 11.7 1.0 1.3 1 0 0 1 1 1 0 MIT domain of nuclear receptor-binding factor 2 Nop10p PF04135.12 gi|134046726|ref|YP_001098211.1| - 1.3e-21 76.3 5.0 1.4e-21 76.3 5.0 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|134046726|ref|YP_001098211.1| - 0.0038 16.8 0.9 0.0057 16.2 0.9 1.3 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|134046726|ref|YP_001098211.1| - 0.011 13.6 0.5 0.011 13.6 0.5 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-ribbon_3 PF13248.6 gi|134046726|ref|YP_001098211.1| - 0.036 13.5 6.5 0.23 10.9 1.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-B_box PF00643.24 gi|134046726|ref|YP_001098211.1| - 0.068 13.3 3.1 0.081 13.1 3.1 1.1 1 0 0 1 1 1 0 B-box zinc finger DZR PF12773.7 gi|134046726|ref|YP_001098211.1| - 0.094 12.8 3.8 0.2 11.7 3.8 1.5 1 1 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|134046726|ref|YP_001098211.1| - 0.15 12.3 4.7 2.2 8.5 0.4 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|134046726|ref|YP_001098211.1| - 0.15 11.8 6.5 1.7 8.4 1.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|134046726|ref|YP_001098211.1| - 0.24 11.1 2.8 3.6 7.4 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 NRDD PF13597.6 gi|134046726|ref|YP_001098211.1| - 0.28 9.9 1.4 0.3 9.8 1.4 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf_UBZ PF18439.1 gi|134046726|ref|YP_001098211.1| - 1.3 8.7 6.4 7 6.3 0.5 2.1 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Creatininase PF02633.14 gi|134046727|ref|YP_001098212.1| - 3.2e-13 49.7 0.0 5.6e-13 48.9 0.0 1.5 1 1 0 1 1 1 1 Creatinine amidohydrolase CDC37_C PF08564.10 gi|134046729|ref|YP_001098214.1| - 0.011 15.8 0.5 0.043 13.9 0.5 2.0 1 0 0 1 1 1 0 Cdc37 C terminal domain PRT_C PF08372.10 gi|134046729|ref|YP_001098214.1| - 0.043 13.6 0.1 0.085 12.6 0.1 1.4 1 0 0 1 1 1 0 Plant phosphoribosyltransferase C-terminal DUF3240 PF11582.8 gi|134046729|ref|YP_001098214.1| - 0.1 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3240) Homoserine_dh PF00742.19 gi|134046730|ref|YP_001098215.1| - 1.9e-55 187.4 2.5 3.4e-55 186.6 1.5 1.8 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|134046730|ref|YP_001098215.1| - 1.4e-09 38.7 0.1 3e-09 37.6 0.1 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|134046730|ref|YP_001098215.1| - 9.9e-06 25.4 0.4 7e-05 22.7 0.4 2.3 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.22 gi|134046730|ref|YP_001098215.1| - 0.077 13.8 0.0 0.21 12.4 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DASH_Dad4 PF08650.10 gi|134046731|ref|YP_001098216.1| - 0.00033 20.6 3.9 0.0094 15.9 2.3 3.0 3 0 0 3 3 3 1 DASH complex subunit Dad4 COMM_domain PF07258.14 gi|134046731|ref|YP_001098216.1| - 0.0037 17.4 0.2 0.018 15.1 0.0 2.1 2 1 0 2 2 2 1 COMM domain ACT PF01842.25 gi|134046731|ref|YP_001098216.1| - 0.026 14.3 2.5 0.045 13.5 0.1 2.5 3 0 0 3 3 3 0 ACT domain DUF5564 PF17719.1 gi|134046731|ref|YP_001098216.1| - 0.066 13.4 0.1 0.46 10.6 0.0 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5564) SSF PF00474.17 gi|134046732|ref|YP_001098217.1| - 7.6e-61 206.2 38.6 1e-60 205.8 38.6 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family SCF PF02404.15 gi|134046733|ref|YP_001098218.1| - 0.033 13.5 0.0 0.035 13.5 0.0 1.0 1 0 0 1 1 1 0 Stem cell factor TssO PF17561.2 gi|134046733|ref|YP_001098218.1| - 0.036 14.2 0.0 0.038 14.1 0.0 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssO CarS-like PF01864.17 gi|134046734|ref|YP_001098219.1| - 2.3e-64 216.6 8.9 2.8e-64 216.3 8.9 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|134046734|ref|YP_001098219.1| - 0.00058 19.7 6.5 0.00059 19.7 4.5 1.9 1 1 0 1 1 1 1 Cytidylyltransferase family DUF92 PF01940.16 gi|134046734|ref|YP_001098219.1| - 0.056 12.8 0.8 0.092 12.2 0.8 1.3 1 0 0 1 1 1 0 Integral membrane protein DUF92 Fer4 PF00037.27 gi|134046735|ref|YP_001098220.1| - 1.6e-20 72.0 45.1 4.1e-06 26.4 5.5 5.0 4 0 0 4 4 4 4 4Fe-4S binding domain Pyr_redox_2 PF07992.14 gi|134046735|ref|YP_001098220.1| - 2.7e-20 72.8 0.0 1e-19 70.9 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|134046735|ref|YP_001098220.1| - 4.2e-14 52.9 38.6 1.9e-08 34.8 10.9 4.5 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134046735|ref|YP_001098220.1| - 2.6e-13 50.7 25.5 0.0026 18.7 0.9 5.0 5 0 0 5 5 4 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|134046735|ref|YP_001098220.1| - 1.3e-12 47.6 35.6 4.2e-06 26.8 11.7 4.7 4 2 0 4 4 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134046735|ref|YP_001098220.1| - 2e-11 43.2 43.2 5.1e-05 23.1 3.9 5.2 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134046735|ref|YP_001098220.1| - 3.6e-11 43.0 38.0 3.4e-07 30.3 10.1 3.8 4 1 0 4 4 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134046735|ref|YP_001098220.1| - 6.8e-10 38.9 43.1 7.2e-06 26.0 10.8 4.9 4 2 1 5 5 5 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134046735|ref|YP_001098220.1| - 2.4e-08 33.7 57.7 0.00019 21.3 4.7 5.6 6 0 0 6 6 5 4 4Fe-4S binding domain DAO PF01266.24 gi|134046735|ref|YP_001098220.1| - 1.1e-07 31.8 0.5 0.006 16.2 0.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Fer4_8 PF13183.6 gi|134046735|ref|YP_001098220.1| - 1.6e-07 31.6 25.7 0.039 14.4 0.1 4.8 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134046735|ref|YP_001098220.1| - 2.4e-07 31.2 26.3 0.052 14.1 0.4 5.2 5 0 0 5 5 5 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134046735|ref|YP_001098220.1| - 2.1e-06 27.8 35.8 0.0052 17.2 0.9 5.2 4 0 0 4 4 4 2 4Fe-4S binding domain NAD_binding_8 PF13450.6 gi|134046735|ref|YP_001098220.1| - 2e-05 24.7 0.1 4.4e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_22 PF17179.4 gi|134046735|ref|YP_001098220.1| - 2.2e-05 25.2 21.5 0.14 13.0 0.5 4.7 4 0 0 4 4 4 3 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|134046735|ref|YP_001098220.1| - 0.00024 20.6 0.0 0.00042 19.8 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_15 PF13459.6 gi|134046735|ref|YP_001098220.1| - 0.00031 21.4 31.7 0.0081 16.9 1.0 5.6 4 1 1 5 5 5 2 4Fe-4S single cluster domain FAD_binding_2 PF00890.24 gi|134046735|ref|YP_001098220.1| - 0.0011 18.2 0.1 0.0019 17.4 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|134046735|ref|YP_001098220.1| - 0.0013 17.9 0.0 0.0021 17.2 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|134046735|ref|YP_001098220.1| - 0.0047 15.7 0.2 0.0095 14.7 0.2 1.5 1 1 0 1 1 1 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|134046735|ref|YP_001098220.1| - 0.007 15.7 0.0 0.042 13.1 0.0 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Fer4_13 PF13370.6 gi|134046735|ref|YP_001098220.1| - 0.01 16.4 38.5 0.22 12.1 3.0 4.7 3 1 1 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Pyr_redox PF00070.27 gi|134046735|ref|YP_001098220.1| - 0.031 14.8 0.1 0.31 11.6 0.2 2.6 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|134046735|ref|YP_001098220.1| - 0.051 12.8 0.0 0.12 11.6 0.0 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|134046735|ref|YP_001098220.1| - 0.1 11.8 0.1 0.2 10.8 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain NAD_binding_9 PF13454.6 gi|134046735|ref|YP_001098220.1| - 0.21 11.6 0.0 4.4 7.3 0.0 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding FlpD PF02662.16 gi|134046736|ref|YP_001098221.1| - 3.3e-46 156.3 0.1 3.7e-46 156.1 0.1 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit zf-ZPR1 PF03367.13 gi|134046736|ref|YP_001098221.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 ZPR1 zinc-finger domain Oxidored_q6 PF01058.22 gi|134046737|ref|YP_001098222.1| - 1.8e-31 108.7 0.1 2.9e-31 108.0 0.1 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.19 gi|134046738|ref|YP_001098223.1| - 6.3e-34 117.7 0.0 5.6e-23 81.6 0.0 3.1 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Anti-TRAP PF15777.5 gi|134046739|ref|YP_001098224.1| - 0.032 14.2 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein NiFeSe_Hases PF00374.19 gi|134046739|ref|YP_001098224.1| - 0.073 12.0 0.1 0.079 11.8 0.1 1.0 1 0 0 1 1 1 0 Nickel-dependent hydrogenase Fer4 PF00037.27 gi|134046740|ref|YP_001098225.1| - 1.6e-57 189.2 127.1 8.2e-07 28.6 2.8 12.1 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134046740|ref|YP_001098225.1| - 1.8e-44 150.1 99.2 3.5e-09 37.1 11.7 7.6 7 1 1 8 8 8 7 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134046740|ref|YP_001098225.1| - 2.6e-37 126.7 98.0 7.8e-07 29.2 8.5 7.9 6 3 2 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134046740|ref|YP_001098225.1| - 1.4e-35 119.9 124.9 3.1e-05 23.8 1.9 12.1 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_16 PF13484.6 gi|134046740|ref|YP_001098225.1| - 6.7e-34 116.6 106.6 0.00042 21.2 1.0 12.1 9 2 4 13 13 13 11 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|134046740|ref|YP_001098225.1| - 2e-33 114.3 112.0 1.7e-08 34.5 14.0 8.5 3 3 6 9 9 9 9 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134046740|ref|YP_001098225.1| - 5.8e-32 109.6 107.2 4.5e-11 42.7 10.7 9.1 5 3 5 10 10 10 10 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134046740|ref|YP_001098225.1| - 9.1e-27 91.5 118.0 0.00026 20.9 2.6 12.2 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_17 PF13534.6 gi|134046740|ref|YP_001098225.1| - 4.5e-18 65.5 99.2 0.0016 18.9 12.3 11.1 7 2 4 11 11 11 9 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134046740|ref|YP_001098225.1| - 6.6e-18 64.9 104.5 0.00012 22.4 11.9 9.8 6 4 4 10 10 10 9 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|134046740|ref|YP_001098225.1| - 3.6e-13 49.7 93.5 0.00014 22.1 7.1 8.2 1 1 7 8 8 8 6 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134046740|ref|YP_001098225.1| - 2.7e-11 43.0 119.6 0.0077 16.7 4.1 12.2 12 0 0 12 12 12 7 4Fe-4S binding domain Fer4_3 PF12798.7 gi|134046740|ref|YP_001098225.1| - 4.2e-08 33.6 148.7 0.024 15.5 5.1 12.5 12 0 0 12 12 12 8 4Fe-4S binding domain Fer4_13 PF13370.6 gi|134046740|ref|YP_001098225.1| - 0.0035 17.8 1.3 0.0035 17.8 1.3 12.4 11 1 0 11 11 10 3 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|134046740|ref|YP_001098225.1| - 0.028 14.6 1.0 0.028 14.6 1.0 7.5 2 2 7 9 9 9 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|134046740|ref|YP_001098225.1| - 0.13 13.0 0.7 0.13 13.0 0.7 12.8 9 5 3 12 12 12 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|134046740|ref|YP_001098225.1| - 1.2 10.0 101.6 0.18 12.7 2.1 11.6 7 3 4 12 12 12 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|134046741|ref|YP_001098226.1| - 8.3e-15 54.7 0.0 1.7e-12 47.0 0.0 2.2 1 1 0 1 1 1 1 Molybdopterin oxidoreductase His_biosynth PF00977.21 gi|134046742|ref|YP_001098227.1| - 4.7e-28 98.2 3.1 7.9e-28 97.5 3.1 1.4 1 1 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|134046742|ref|YP_001098227.1| - 0.00018 20.9 0.0 0.00099 18.5 0.0 1.9 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|134046742|ref|YP_001098227.1| - 0.0015 17.4 0.1 0.5 9.2 0.0 2.3 2 1 0 2 2 2 2 Tryptophan synthase alpha chain PRAI PF00697.22 gi|134046742|ref|YP_001098227.1| - 0.0071 16.1 1.3 0.012 15.4 1.0 1.5 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TPP_enzyme_C PF02775.21 gi|134046743|ref|YP_001098228.1| - 4.8e-17 62.2 0.1 1e-16 61.1 0.1 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 gi|134046743|ref|YP_001098228.1| - 0.024 13.6 0.0 0.034 13.1 0.0 1.3 1 1 0 1 1 1 0 Dehydrogenase E1 component PYRIN PF02758.16 gi|134046744|ref|YP_001098229.1| - 0.027 14.6 0.0 0.2 11.8 0.0 2.3 2 0 0 2 2 2 0 PAAD/DAPIN/Pyrin domain AbrB_C PF18277.1 gi|134046744|ref|YP_001098229.1| - 0.14 11.8 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 AbrB C-terminal domain Fer4 PF00037.27 gi|134046745|ref|YP_001098230.1| - 1.5e-11 43.6 16.3 5.7e-06 25.9 6.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|134046745|ref|YP_001098230.1| - 3.1e-08 33.7 10.2 4.8e-08 33.0 10.2 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134046745|ref|YP_001098230.1| - 3.6e-08 33.9 9.6 5.4e-08 33.3 9.7 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134046745|ref|YP_001098230.1| - 4.2e-08 33.2 12.7 7e-08 32.5 12.7 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134046745|ref|YP_001098230.1| - 1.2e-07 32.5 10.5 0.0014 19.5 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|134046745|ref|YP_001098230.1| - 1.3e-07 31.7 14.9 0.001 19.1 3.7 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134046745|ref|YP_001098230.1| - 1.6e-06 27.9 15.9 0.00011 22.1 5.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134046745|ref|YP_001098230.1| - 1.6e-05 24.7 13.7 0.00051 20.0 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|134046745|ref|YP_001098230.1| - 4.6e-05 23.9 12.0 0.00012 22.6 12.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|134046745|ref|YP_001098230.1| - 0.00039 20.7 12.8 0.095 13.2 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|134046745|ref|YP_001098230.1| - 0.0008 20.2 15.4 0.076 14.0 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|134046745|ref|YP_001098230.1| - 0.0026 18.6 4.6 0.3 11.9 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134046745|ref|YP_001098230.1| - 0.0073 16.8 12.7 0.49 11.0 12.8 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|134046745|ref|YP_001098230.1| - 0.014 15.8 14.5 2.5 8.6 14.5 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134046745|ref|YP_001098230.1| - 0.06 14.1 12.4 1 10.2 12.4 2.3 1 1 0 1 1 1 0 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|134046745|ref|YP_001098230.1| - 0.14 12.3 9.1 0.32 11.2 9.1 1.6 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|134046745|ref|YP_001098230.1| - 0.15 12.3 12.7 1.1 9.5 3.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain TruB_N PF01509.18 gi|134046746|ref|YP_001098231.1| - 4.4e-24 85.5 0.1 9.5e-21 74.7 0.1 3.2 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|134046746|ref|YP_001098231.1| - 1.6e-22 79.4 0.0 3e-22 78.5 0.0 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain DKCLD PF08068.12 gi|134046746|ref|YP_001098231.1| - 2.5e-16 59.5 0.1 8.8e-16 57.7 0.1 1.9 2 0 0 2 2 2 1 DKCLD (NUC011) domain PUA PF01472.20 gi|134046746|ref|YP_001098231.1| - 2.8e-16 59.2 2.7 4.9e-16 58.5 2.7 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|134046746|ref|YP_001098231.1| - 0.005 17.1 0.4 0.032 14.5 0.1 2.3 2 0 0 2 2 2 1 UPF0113 PUA domain DUF2805 PF10985.8 gi|134046746|ref|YP_001098231.1| - 0.023 15.0 0.7 0.048 14.0 0.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2805) RNA_pol_Rpb5_C PF01191.19 gi|134046746|ref|YP_001098231.1| - 0.036 13.9 0.1 3.3 7.6 0.0 2.5 2 0 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain Class_IIIsignal PF04021.12 gi|134046747|ref|YP_001098232.1| - 1.3e-09 37.8 2.4 1.8e-09 37.2 2.4 1.3 1 0 0 1 1 1 1 Class III signal peptide Class_IIIsignal PF04021.12 gi|134046748|ref|YP_001098233.1| - 1.4e-09 37.6 2.7 2.1e-09 37.1 2.7 1.3 1 0 0 1 1 1 1 Class III signal peptide DUF4330 PF14221.6 gi|134046748|ref|YP_001098233.1| - 0.038 14.2 0.3 0.038 14.2 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Arch_flagellin PF01917.16 gi|134046748|ref|YP_001098233.1| - 0.059 13.6 4.4 0.069 13.3 4.4 1.1 1 0 0 1 1 1 0 Archaebacterial flagellin DUF2371 PF10177.9 gi|134046748|ref|YP_001098233.1| - 0.064 13.4 0.3 0.069 13.3 0.3 1.0 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) Metallophos PF00149.28 gi|134046749|ref|YP_001098234.1| - 5.4e-13 49.9 0.1 7.5e-13 49.4 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|134046749|ref|YP_001098234.1| - 1.8e-12 47.8 0.1 6.5e-12 45.9 0.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|134046749|ref|YP_001098234.1| - 1.6e-08 34.2 0.2 4e-07 29.6 0.0 2.5 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily NADH_oxidored PF08040.11 gi|134046750|ref|YP_001098235.1| - 1.6 8.4 3.6 1.7 8.4 0.1 2.6 3 0 0 3 3 3 0 MNLL subunit DHHA1 PF02272.19 gi|134046751|ref|YP_001098236.1| - 5e-15 56.1 0.7 9.1e-14 52.0 0.1 2.5 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|134046751|ref|YP_001098236.1| - 0.0026 18.0 0.1 0.0047 17.2 0.1 1.4 1 0 0 1 1 1 1 DHH family PAPS_reduct PF01507.19 gi|134046752|ref|YP_001098237.1| - 5.9e-44 150.2 0.0 9.4e-44 149.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|134046752|ref|YP_001098237.1| - 0.031 13.4 0.0 0.052 12.7 0.0 1.4 1 0 0 1 1 1 0 NAD synthase QueC PF06508.13 gi|134046752|ref|YP_001098237.1| - 0.082 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC SIS PF01380.22 gi|134046753|ref|YP_001098238.1| - 2.1e-33 115.0 1.6 7.5e-21 74.4 0.5 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|134046753|ref|YP_001098238.1| - 1e-16 61.4 0.0 1.8e-16 60.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|134046753|ref|YP_001098238.1| - 1.1e-16 60.9 0.0 2.8e-16 59.5 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|134046753|ref|YP_001098238.1| - 0.0043 16.0 0.1 0.0075 15.2 0.1 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Ligase_CoA PF00549.19 gi|134046753|ref|YP_001098238.1| - 0.11 12.3 0.4 0.27 11.0 0.4 1.7 1 0 0 1 1 1 0 CoA-ligase U-box PF04564.15 gi|134046753|ref|YP_001098238.1| - 0.13 12.4 0.1 0.83 9.9 0.1 2.2 2 0 0 2 2 2 0 U-box domain UPF0179 PF03684.13 gi|134046754|ref|YP_001098239.1| - 9.1e-48 161.7 5.9 1e-47 161.5 5.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) HI0933_like PF03486.14 gi|134046754|ref|YP_001098239.1| - 0.045 12.4 0.0 0.054 12.2 0.0 1.1 1 0 0 1 1 1 0 HI0933-like protein AP_endonuc_2 PF01261.24 gi|134046755|ref|YP_001098240.1| - 2.7e-13 49.8 0.0 3.3e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|134046755|ref|YP_001098240.1| - 1.5e-05 24.4 0.5 2.2e-05 23.8 0.5 1.3 1 0 0 1 1 1 1 UV-endonuclease UvdE FDX-ACB PF03147.14 gi|134046755|ref|YP_001098240.1| - 0.012 16.0 0.4 0.023 15.1 0.4 1.5 1 0 0 1 1 1 0 Ferredoxin-fold anticodon binding domain UbiA PF01040.18 gi|134046756|ref|YP_001098241.1| - 4.3e-36 124.5 9.2 5.4e-36 124.2 9.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family T2SSF PF00482.23 gi|134046757|ref|YP_001098242.1| - 1.9e-17 63.4 0.0 5.2e-09 36.1 0.0 3.0 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF4131 PF13567.6 gi|134046757|ref|YP_001098242.1| - 2.4 7.8 6.7 5.6 6.6 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) T2SSE PF00437.20 gi|134046758|ref|YP_001098243.1| - 3e-44 151.1 0.0 5.9e-44 150.2 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_22 PF13401.6 gi|134046758|ref|YP_001098243.1| - 0.0059 16.9 0.0 0.017 15.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|134046758|ref|YP_001098243.1| - 0.012 15.4 0.1 0.026 14.3 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|134046758|ref|YP_001098243.1| - 0.015 15.0 0.1 0.2 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|134046758|ref|YP_001098243.1| - 0.029 14.9 0.0 0.075 13.5 0.0 1.7 2 0 0 2 2 2 0 ABC transporter Phytoreo_Pns PF05451.11 gi|134046758|ref|YP_001098243.1| - 0.19 10.9 0.0 2 7.5 0.0 2.2 2 1 0 2 2 2 0 Phytoreovirus nonstructural protein Pns10/11 Glyco_trans_4_4 PF13579.6 gi|134046758|ref|YP_001098243.1| - 0.23 11.9 0.0 0.37 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain AAA_23 PF13476.6 gi|134046758|ref|YP_001098243.1| - 0.37 11.3 2.7 0.43 11.0 0.5 2.0 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|134046759|ref|YP_001098244.1| - 2.4e-13 50.0 0.3 3e-13 49.7 0.3 1.1 1 0 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|134046759|ref|YP_001098244.1| - 0.00021 20.6 0.2 0.00036 19.9 0.2 1.4 1 1 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|134046759|ref|YP_001098244.1| - 0.17 11.4 0.0 0.54 9.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|134046759|ref|YP_001098244.1| - 0.18 11.8 2.0 1.4 8.9 1.4 2.4 1 1 0 1 1 1 0 AAA domain Arch_flagellin PF01917.16 gi|134046760|ref|YP_001098245.1| - 1.6e-26 93.5 8.3 1.8e-26 93.3 8.3 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin AAA_assoc PF14363.6 gi|134046761|ref|YP_001098246.1| - 0.022 15.1 0.2 0.038 14.3 0.2 1.3 1 0 0 1 1 1 0 Domain associated at C-terminal with AAA Arch_fla_DE PF04659.13 gi|134046762|ref|YP_001098247.1| - 1.8e-26 91.8 0.0 2.6e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal flagella protein DUF348 PF03990.14 gi|134046762|ref|YP_001098247.1| - 0.049 13.4 0.0 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain Arch_fla_DE PF04659.13 gi|134046763|ref|YP_001098248.1| - 1.7e-29 101.5 0.1 4e-29 100.3 0.1 1.7 1 0 0 1 1 1 1 Archaeal flagella protein DUF1389 PF07146.11 gi|134046763|ref|YP_001098248.1| - 0.0046 16.3 0.4 0.01 15.1 0.2 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1389) DUF16 PF01519.16 gi|134046763|ref|YP_001098248.1| - 0.15 12.5 1.6 0.4 11.2 1.1 1.9 1 1 0 1 1 1 0 Protein of unknown function DUF16 S6OS1 PF15676.5 gi|134046763|ref|YP_001098248.1| - 0.22 9.9 5.2 0.34 9.3 5.2 1.2 1 0 0 1 1 1 0 Six6 opposite strand transcript 1 family AAA_23 PF13476.6 gi|134046763|ref|YP_001098248.1| - 0.68 10.4 6.0 16 5.9 5.5 2.3 1 1 0 2 2 2 0 AAA domain HSBP1 PF06825.12 gi|134046763|ref|YP_001098248.1| - 0.76 9.7 5.6 8.2 6.4 0.1 3.8 2 1 1 3 3 3 0 Heat shock factor binding protein 1 DHR10 PF18595.1 gi|134046763|ref|YP_001098248.1| - 0.92 9.6 4.4 0.4 10.7 0.5 2.3 3 0 0 3 3 3 0 Designed helical repeat protein 10 domain ABC_tran_CTD PF16326.5 gi|134046763|ref|YP_001098248.1| - 2.4 8.5 12.1 5.1 7.4 0.0 3.8 3 1 0 3 3 3 0 ABC transporter C-terminal domain Seryl_tRNA_N PF02403.22 gi|134046763|ref|YP_001098248.1| - 2.9 8.2 12.3 0.055 13.7 3.5 2.7 3 1 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF4795 PF16043.5 gi|134046763|ref|YP_001098248.1| - 9.8 5.7 9.8 6.6 6.3 6.4 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4795) FlaC_arch PF05377.11 gi|134046764|ref|YP_001098249.1| - 5.5e-22 77.9 17.8 1.8e-20 73.0 2.8 3.3 3 0 0 3 3 3 2 Flagella accessory protein C (FlaC) CENP-F_leu_zip PF10473.9 gi|134046764|ref|YP_001098249.1| - 0.00012 22.1 12.8 0.0038 17.2 5.8 2.3 2 1 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF812 PF05667.11 gi|134046764|ref|YP_001098249.1| - 0.0064 15.4 12.2 0.0083 15.1 12.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Snapin_Pallidin PF14712.6 gi|134046764|ref|YP_001098249.1| - 0.0071 16.7 3.3 0.0071 16.7 3.3 2.2 2 1 1 3 3 2 1 Snapin/Pallidin CLZ PF16526.5 gi|134046764|ref|YP_001098249.1| - 0.0081 16.5 2.6 2.4 8.6 0.2 2.5 2 0 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels HALZ PF02183.18 gi|134046764|ref|YP_001098249.1| - 0.01 16.1 8.9 0.16 12.2 0.4 3.2 2 1 1 3 3 3 1 Homeobox associated leucine zipper Med4 PF10018.9 gi|134046764|ref|YP_001098249.1| - 0.012 15.3 1.3 0.012 15.3 1.3 1.9 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF3452 PF11934.8 gi|134046764|ref|YP_001098249.1| - 0.015 14.9 1.5 0.34 10.5 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3452) GIT_CC PF16559.5 gi|134046764|ref|YP_001098249.1| - 0.016 15.1 4.7 1.5 8.8 0.4 2.9 2 1 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor Cnn_1N PF07989.11 gi|134046764|ref|YP_001098249.1| - 0.016 15.3 4.7 0.016 15.3 4.7 2.6 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 DUF1664 PF07889.12 gi|134046764|ref|YP_001098249.1| - 0.019 15.0 9.4 0.033 14.2 0.5 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF2353 PF09789.9 gi|134046764|ref|YP_001098249.1| - 0.022 14.1 10.1 0.053 12.9 2.8 2.4 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) Sec34 PF04136.15 gi|134046764|ref|YP_001098249.1| - 0.027 14.4 0.3 0.027 14.4 0.3 2.5 2 1 1 3 3 2 0 Sec34-like family Cep57_CLD_2 PF14197.6 gi|134046764|ref|YP_001098249.1| - 0.033 14.3 3.7 1.3 9.2 0.3 2.6 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 UPF0128 PF03673.13 gi|134046764|ref|YP_001098249.1| - 0.064 12.7 1.3 0.088 12.3 1.2 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0128) H-kinase_dim PF02895.14 gi|134046764|ref|YP_001098249.1| - 0.068 13.6 5.0 0.57 10.6 5.0 2.5 1 1 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain DUF2431 PF10354.9 gi|134046764|ref|YP_001098249.1| - 0.078 13.2 2.2 0.52 10.6 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2431) Flu_M1_C PF08289.11 gi|134046764|ref|YP_001098249.1| - 0.084 13.1 0.6 0.29 11.4 0.2 2.0 1 1 1 2 2 2 0 Influenza Matrix protein (M1) C-terminal domain YabA PF06156.13 gi|134046764|ref|YP_001098249.1| - 0.096 13.3 11.4 0.44 11.2 2.2 2.7 1 1 1 2 2 2 0 Initiation control protein YabA DUF4559 PF15112.6 gi|134046764|ref|YP_001098249.1| - 0.11 12.2 8.3 0.13 11.9 8.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Jnk-SapK_ap_N PF09744.9 gi|134046764|ref|YP_001098249.1| - 0.11 12.7 12.3 0.4 10.9 5.3 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 UPF0449 PF15136.6 gi|134046764|ref|YP_001098249.1| - 0.12 12.9 8.2 4.7 7.7 3.1 3.0 2 1 0 2 2 2 0 Uncharacterised protein family UPF0449 bZIP_2 PF07716.15 gi|134046764|ref|YP_001098249.1| - 0.12 12.5 11.0 3.3 7.9 0.1 3.4 3 0 0 3 3 3 0 Basic region leucine zipper MYCBPAP PF14646.6 gi|134046764|ref|YP_001098249.1| - 0.14 11.1 4.5 0.3 10.0 4.5 1.7 1 1 0 1 1 1 0 MYCBP-associated protein family bZIP_1 PF00170.21 gi|134046764|ref|YP_001098249.1| - 0.18 12.0 16.1 0.16 12.1 0.6 3.5 3 1 1 4 4 3 0 bZIP transcription factor COG2 PF06148.11 gi|134046764|ref|YP_001098249.1| - 0.24 11.5 6.6 0.076 13.1 1.7 2.3 1 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF641 PF04859.12 gi|134046764|ref|YP_001098249.1| - 0.25 11.7 8.0 0.041 14.2 1.4 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) Cob_adeno_trans PF01923.18 gi|134046764|ref|YP_001098249.1| - 0.27 11.4 2.0 0.28 11.3 1.1 1.5 1 1 1 2 2 2 0 Cobalamin adenosyltransferase KASH_CCD PF14662.6 gi|134046764|ref|YP_001098249.1| - 0.28 11.0 14.6 0.024 14.5 9.6 1.8 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH APG6_N PF17675.1 gi|134046764|ref|YP_001098249.1| - 0.33 11.5 12.9 1.2 9.6 7.0 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region Med22 PF06179.12 gi|134046764|ref|YP_001098249.1| - 0.54 10.5 10.1 0.15 12.3 2.7 2.7 2 2 0 2 2 2 0 Surfeit locus protein 5 subunit 22 of Mediator complex Sigma70_ner PF04546.13 gi|134046764|ref|YP_001098249.1| - 0.67 9.8 13.0 0.23 11.3 7.6 2.1 1 1 1 2 2 2 0 Sigma-70, non-essential region Syntaxin_2 PF14523.6 gi|134046764|ref|YP_001098249.1| - 0.72 10.3 11.2 0.5 10.8 4.3 2.5 1 1 1 2 2 2 0 Syntaxin-like protein Fzo_mitofusin PF04799.13 gi|134046764|ref|YP_001098249.1| - 0.75 9.3 5.4 1.7 8.2 1.0 2.2 1 1 1 2 2 2 0 fzo-like conserved region OmpH PF03938.14 gi|134046764|ref|YP_001098249.1| - 0.81 10.0 10.2 5.4 7.3 10.2 2.2 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) LPP PF04728.13 gi|134046764|ref|YP_001098249.1| - 0.85 10.1 6.6 9.9 6.6 0.6 3.2 3 1 0 3 3 2 0 Lipoprotein leucine-zipper Shugoshin_N PF07558.11 gi|134046764|ref|YP_001098249.1| - 0.92 9.4 7.8 1.4 8.8 3.1 3.2 2 1 0 2 2 2 0 Shugoshin N-terminal coiled-coil region BLOC1_2 PF10046.9 gi|134046764|ref|YP_001098249.1| - 0.92 9.9 11.9 2.9 8.3 1.2 2.6 2 1 0 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 JIP_LZII PF16471.5 gi|134046764|ref|YP_001098249.1| - 1 9.6 12.5 1.6 9.0 3.2 3.1 2 2 0 2 2 2 0 JNK-interacting protein leucine zipper II XhlA PF10779.9 gi|134046764|ref|YP_001098249.1| - 1 9.6 14.4 1.3 9.2 0.6 3.4 3 1 0 3 3 3 0 Haemolysin XhlA Troponin PF00992.20 gi|134046764|ref|YP_001098249.1| - 1.1 9.6 10.4 4.6 7.6 4.8 2.3 2 0 0 2 2 2 0 Troponin DUF2205 PF10224.9 gi|134046764|ref|YP_001098249.1| - 1.1 9.3 10.8 3.4 7.7 1.6 2.6 3 0 0 3 3 2 0 Short coiled-coil protein Fungal_TACC PF12709.7 gi|134046764|ref|YP_001098249.1| - 1.2 9.7 7.5 3.8 8.0 0.2 2.8 2 1 0 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins THOC7 PF05615.13 gi|134046764|ref|YP_001098249.1| - 1.2 9.4 10.6 11 6.3 10.6 2.1 1 1 0 1 1 1 0 Tho complex subunit 7 Rootletin PF15035.6 gi|134046764|ref|YP_001098249.1| - 1.3 9.1 8.9 1.9 8.4 4.2 2.3 2 1 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion FapA PF03961.13 gi|134046764|ref|YP_001098249.1| - 1.3 7.6 13.8 0.076 11.6 4.6 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A DMPK_coil PF08826.10 gi|134046764|ref|YP_001098249.1| - 1.5 9.0 9.3 9.2 6.5 1.1 2.8 2 1 0 2 2 2 0 DMPK coiled coil domain like TMPIT PF07851.13 gi|134046764|ref|YP_001098249.1| - 2.5 7.2 6.5 1.4 8.1 3.9 1.4 1 1 0 1 1 1 0 TMPIT-like protein DUF948 PF06103.11 gi|134046764|ref|YP_001098249.1| - 2.6 8.4 6.7 0.81 10.0 2.2 2.4 2 1 2 4 4 2 0 Bacterial protein of unknown function (DUF948) DivIC PF04977.15 gi|134046764|ref|YP_001098249.1| - 2.8 7.8 9.5 2.3 8.0 0.1 3.4 2 1 0 3 3 3 0 Septum formation initiator JAKMIP_CC3 PF16034.5 gi|134046764|ref|YP_001098249.1| - 2.9 7.8 11.4 2.5 8.0 2.9 2.2 1 1 0 2 2 2 0 JAKMIP CC3 domain Occludin_ELL PF07303.13 gi|134046764|ref|YP_001098249.1| - 3 8.6 5.8 7 7.4 0.1 2.7 2 1 1 3 3 2 0 Occludin homology domain BST2 PF16716.5 gi|134046764|ref|YP_001098249.1| - 3.4 8.3 10.3 1.8 9.2 1.3 3.0 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 DUF4446 PF14584.6 gi|134046764|ref|YP_001098249.1| - 3.7 7.5 9.8 7.6 6.5 1.1 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) Syntaxin-6_N PF09177.11 gi|134046764|ref|YP_001098249.1| - 6.1 7.5 9.1 18 6.0 3.0 2.7 1 1 2 3 3 3 0 Syntaxin 6, N-terminal zf-CpG_bind_C PF12269.8 gi|134046764|ref|YP_001098249.1| - 6.3 6.5 9.2 4.5 7.0 0.7 2.6 1 1 2 3 3 3 0 CpG binding protein zinc finger C terminal domain FlxA PF14282.6 gi|134046764|ref|YP_001098249.1| - 8.3 6.5 10.9 1.3 9.1 0.3 3.1 2 1 0 3 3 3 0 FlxA-like protein UPF0242 PF06785.11 gi|134046764|ref|YP_001098249.1| - 9 6.3 15.6 1.1e+02 2.8 1.3 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus ZapB PF06005.12 gi|134046764|ref|YP_001098249.1| - 9.7 6.7 13.4 48 4.5 2.1 2.7 1 1 1 2 2 2 0 Cell division protein ZapB Arch_flagellin PF01917.16 gi|134046765|ref|YP_001098250.1| - 5.4e-42 143.8 10.4 6.3e-42 143.6 10.4 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin TadF PF16964.5 gi|134046765|ref|YP_001098250.1| - 0.01 15.6 0.4 0.016 15.0 0.4 1.3 1 0 0 1 1 1 1 Putative tight adherence pilin protein F Arch_flagellin PF01917.16 gi|134046766|ref|YP_001098251.1| - 8.6e-52 175.6 9.0 1e-51 175.4 9.0 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|134046767|ref|YP_001098252.1| - 3.2e-49 167.3 7.8 3.7e-49 167.1 7.8 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|134046768|ref|YP_001098253.1| - 4e-44 150.7 15.8 1.2e-34 119.9 9.1 2.1 1 1 1 2 2 2 2 Archaebacterial flagellin Adaptin_N PF01602.20 gi|134046769|ref|YP_001098254.1| - 7.1e-16 57.9 15.1 1.9e-12 46.5 3.1 2.8 1 1 2 3 3 3 2 Adaptin N terminal region HEAT_2 PF13646.6 gi|134046769|ref|YP_001098254.1| - 9.7e-14 51.5 0.0 9.5e-06 25.9 0.0 4.0 3 1 2 5 5 5 4 HEAT repeats HEAT PF02985.22 gi|134046769|ref|YP_001098254.1| - 2.6e-11 42.8 0.0 5.2e-05 23.2 0.0 5.8 6 0 0 6 6 6 2 HEAT repeat Cnd1 PF12717.7 gi|134046769|ref|YP_001098254.1| - 1e-07 32.1 6.8 0.00032 20.8 2.5 4.4 1 1 2 3 3 3 2 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|134046769|ref|YP_001098254.1| - 0.00024 21.5 0.0 16 6.1 0.0 5.2 4 1 2 6 6 6 1 HEAT-like repeat Arm PF00514.23 gi|134046769|ref|YP_001098254.1| - 0.0078 16.2 0.0 1.1e+02 3.1 0.0 5.3 6 0 0 6 6 6 0 Armadillo/beta-catenin-like repeat Trans_reg_C PF00486.28 gi|134046769|ref|YP_001098254.1| - 0.0081 16.2 0.0 0.028 14.5 0.0 2.0 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Vac14_Fab1_bd PF12755.7 gi|134046769|ref|YP_001098254.1| - 0.069 13.8 4.6 25 5.5 0.0 4.3 3 1 2 5 5 5 0 Vacuolar 14 Fab1-binding region F420_ligase PF01996.16 gi|134046770|ref|YP_001098255.1| - 6.6e-35 120.6 0.0 7.6e-35 120.4 0.0 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase DUF521 PF04412.13 gi|134046771|ref|YP_001098256.1| - 3.6e-162 539.7 0.2 4e-162 539.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Matrix PF00661.21 gi|134046771|ref|YP_001098256.1| - 0.11 11.2 0.0 0.21 10.3 0.0 1.4 1 0 0 1 1 1 0 Viral matrix protein Sep15_SelM PF08806.11 gi|134046771|ref|YP_001098256.1| - 0.13 12.5 0.3 0.29 11.3 0.3 1.5 1 0 0 1 1 1 0 Sep15/SelM redox domain Citrate_ly_lig PF08218.11 gi|134046771|ref|YP_001098256.1| - 0.14 11.9 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Citrate lyase ligase C-terminal domain TP_methylase PF00590.20 gi|134046773|ref|YP_001098258.1| - 2.6e-44 151.7 0.2 3e-44 151.5 0.2 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|134046773|ref|YP_001098258.1| - 0.022 15.1 0.0 0.031 14.7 0.0 1.5 1 1 0 1 1 1 0 Radical SAM superfamily DUF2304 PF10066.9 gi|134046775|ref|YP_001098260.1| - 3.2e-27 94.8 6.5 3.5e-27 94.7 6.5 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) Saf_2TM PF18303.1 gi|134046775|ref|YP_001098260.1| - 0.42 10.2 5.7 0.075 12.6 1.0 1.8 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain Wzy_C PF04932.15 gi|134046775|ref|YP_001098260.1| - 4 7.0 8.8 17 5.1 8.8 1.8 1 1 0 1 1 1 0 O-Antigen ligase OTCace_N PF02729.21 gi|134046776|ref|YP_001098261.1| - 3.5e-49 166.6 0.0 6e-49 165.9 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|134046776|ref|YP_001098261.1| - 1.6e-26 93.2 0.0 2.2e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Ribosomal_S8e PF01201.22 gi|134046777|ref|YP_001098262.1| - 3.7e-30 104.9 7.3 4.2e-30 104.7 7.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e TBPIP PF07106.13 gi|134046777|ref|YP_001098262.1| - 0.11 12.5 4.0 1.7 8.7 3.0 2.7 2 1 0 2 2 2 0 TBPIP/Hop2 winged helix domain DUF43 PF01861.16 gi|134046778|ref|YP_001098263.1| - 1.5e-76 256.8 0.0 2.1e-76 256.3 0.0 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain N6-adenineMlase PF10237.9 gi|134046778|ref|YP_001098263.1| - 5.4e-05 23.1 0.0 9.8e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Probable N6-adenine methyltransferase Cons_hypoth95 PF03602.15 gi|134046778|ref|YP_001098263.1| - 7e-05 22.5 0.0 0.00017 21.3 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MarR PF01047.22 gi|134046778|ref|YP_001098263.1| - 0.0008 19.3 0.0 0.0025 17.7 0.0 1.8 1 0 0 1 1 1 1 MarR family DUF2072 PF09845.9 gi|134046778|ref|YP_001098263.1| - 0.0025 18.1 3.9 0.13 12.5 3.0 2.6 2 0 0 2 2 2 1 Zn-ribbon containing protein Methyltransf_25 PF13649.6 gi|134046778|ref|YP_001098263.1| - 0.016 15.9 0.0 0.052 14.2 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|134046778|ref|YP_001098263.1| - 0.026 14.1 0.0 0.094 12.3 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase small domain Zn-ribbon_8 PF09723.10 gi|134046778|ref|YP_001098263.1| - 0.031 14.4 3.3 0.29 11.3 1.4 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Anti-TRAP PF15777.5 gi|134046778|ref|YP_001098263.1| - 0.036 14.0 0.4 0.81 9.7 0.0 2.4 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein TF_Zn_Ribbon PF08271.12 gi|134046778|ref|YP_001098263.1| - 0.069 12.7 0.2 0.069 12.7 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.18 gi|134046778|ref|YP_001098263.1| - 2.1 8.3 7.3 2.8 7.9 0.4 2.7 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) SNO PF01174.19 gi|134046779|ref|YP_001098264.1| - 6.7e-60 202.1 0.1 7.7e-60 202.0 0.1 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.28 gi|134046779|ref|YP_001098264.1| - 4.6e-09 36.3 0.0 8.5e-09 35.4 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|134046779|ref|YP_001098264.1| - 3.1e-05 23.7 0.0 4.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|134046779|ref|YP_001098264.1| - 0.064 12.9 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S51 Peptidase_C26 PF07722.13 gi|134046779|ref|YP_001098264.1| - 0.092 12.5 0.6 0.79 9.4 0.2 2.6 1 1 1 2 2 2 0 Peptidase C26 HEAT_2 PF13646.6 gi|134046780|ref|YP_001098265.1| - 0.035 14.5 0.0 3.3 8.2 0.0 3.8 4 0 0 4 4 4 0 HEAT repeats partial_CstF PF15861.5 gi|134046780|ref|YP_001098265.1| - 2.1 8.2 7.2 0.49 10.2 1.8 2.9 2 0 0 2 2 2 0 Partial cleavage stimulation factor domain DUF5071 PF16804.5 gi|134046781|ref|YP_001098266.1| - 0.0065 16.7 0.7 0.0065 16.7 0.7 4.7 4 0 0 4 4 4 1 Domain of unknown function (DUF5071) HEAT_UF PF18817.1 gi|134046781|ref|YP_001098266.1| - 0.034 14.4 0.1 15 5.9 0.1 3.6 3 0 0 3 3 3 0 Repeat of uncharacterized protein PH0542 Sigma_1s PF02454.16 gi|134046781|ref|YP_001098266.1| - 0.069 13.1 0.1 0.24 11.4 0.1 2.0 1 0 0 1 1 1 0 Sigma 1s protein RFC1 PF08519.12 gi|134046781|ref|YP_001098266.1| - 1.5 9.0 15.4 0.8 9.8 0.1 4.1 4 1 0 4 4 4 0 Replication factor RFC1 C terminal domain SBP_bac_11 PF13531.6 gi|134046782|ref|YP_001098267.1| - 1.5e-21 77.2 0.0 2e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|134046782|ref|YP_001098267.1| - 0.0014 18.6 3.0 0.004 17.1 3.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|134046783|ref|YP_001098268.1| - 6.3e-43 147.2 0.0 7.1e-43 147.0 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|134046783|ref|YP_001098268.1| - 0.0015 18.4 2.2 0.021 14.6 0.6 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein OpuAC PF04069.12 gi|134046783|ref|YP_001098268.1| - 0.005 16.4 0.5 0.0065 16.1 0.5 1.1 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Phosphonate-bd PF12974.7 gi|134046783|ref|YP_001098268.1| - 0.009 15.6 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Baculo_PEP_N PF04512.12 gi|134046783|ref|YP_001098268.1| - 0.057 13.7 0.1 0.096 13.0 0.1 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, N terminus BPD_transp_1 PF00528.22 gi|134046784|ref|YP_001098269.1| - 4.6e-19 68.9 16.8 4.6e-19 68.9 16.8 1.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|134046785|ref|YP_001098270.1| - 9.3e-31 107.2 0.0 1.5e-30 106.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|134046785|ref|YP_001098270.1| - 3.4e-09 36.9 0.0 1.7e-08 34.6 0.0 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|134046785|ref|YP_001098270.1| - 2.5e-05 24.3 0.3 0.0065 16.3 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|134046785|ref|YP_001098270.1| - 6.7e-05 23.0 0.0 0.00014 22.0 0.0 1.5 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|134046785|ref|YP_001098270.1| - 0.0013 18.2 0.5 0.043 13.2 0.5 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|134046785|ref|YP_001098270.1| - 0.0016 18.2 0.1 0.0039 16.9 0.0 1.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|134046785|ref|YP_001098270.1| - 0.0035 17.9 1.1 0.0066 17.0 1.1 1.4 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|134046785|ref|YP_001098270.1| - 0.0045 16.1 0.0 0.008 15.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein RuvA_N PF01330.21 gi|134046785|ref|YP_001098270.1| - 0.016 15.3 0.3 0.12 12.5 0.0 2.6 3 0 0 3 3 3 0 RuvA N terminal domain AAA_22 PF13401.6 gi|134046785|ref|YP_001098270.1| - 0.026 14.8 0.1 0.041 14.2 0.1 1.4 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|134046785|ref|YP_001098270.1| - 0.067 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|134046785|ref|YP_001098270.1| - 0.091 13.0 0.1 1.5 9.1 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|134046785|ref|YP_001098270.1| - 0.18 12.1 0.0 0.26 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain NAD_binding_8 PF13450.6 gi|134046786|ref|YP_001098271.1| - 7.5e-09 35.7 0.2 5.7e-08 32.9 0.2 2.5 2 1 1 3 3 3 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|134046786|ref|YP_001098271.1| - 1.7e-06 27.6 0.0 7e-06 25.6 0.0 2.0 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.24 gi|134046786|ref|YP_001098271.1| - 0.0098 15.5 0.1 3.9 7.0 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|134046786|ref|YP_001098271.1| - 0.078 13.6 2.0 7.5 7.2 0.2 3.6 3 1 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase AAA PF00004.29 gi|134046787|ref|YP_001098272.1| - 3.2e-45 153.8 0.0 6.5e-45 152.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|134046787|ref|YP_001098272.1| - 4.5e-14 52.0 2.4 1.4e-13 50.4 0.6 2.4 2 0 0 2 2 2 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|134046787|ref|YP_001098272.1| - 1.6e-09 37.5 0.1 3.6e-09 36.4 0.1 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_5 PF07728.14 gi|134046787|ref|YP_001098272.1| - 5.3e-08 32.9 0.1 3e-07 30.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|134046787|ref|YP_001098272.1| - 1.4e-07 31.8 1.1 9.5e-07 29.1 0.0 2.6 3 0 0 3 3 3 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|134046787|ref|YP_001098272.1| - 3e-06 27.1 0.0 1.1e-05 25.2 0.0 1.9 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|134046787|ref|YP_001098272.1| - 7.2e-06 26.5 0.1 0.0022 18.4 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain Prot_ATP_OB_N PF17758.1 gi|134046787|ref|YP_001098272.1| - 1.3e-05 24.7 0.0 2.8e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain DUF815 PF05673.13 gi|134046787|ref|YP_001098272.1| - 4.2e-05 22.8 0.0 7.9e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|134046787|ref|YP_001098272.1| - 0.00014 22.2 0.2 0.01 16.1 0.1 2.5 1 1 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|134046787|ref|YP_001098272.1| - 0.0019 17.5 0.0 0.0019 17.5 0.0 2.4 3 0 0 3 3 3 1 TIP49 P-loop domain AAA_14 PF13173.6 gi|134046787|ref|YP_001098272.1| - 0.0019 18.2 0.1 0.0063 16.6 0.0 1.9 2 0 0 2 2 1 1 AAA domain ATPase PF06745.13 gi|134046787|ref|YP_001098272.1| - 0.0031 16.9 1.9 0.0068 15.8 0.1 2.3 2 1 0 2 2 2 1 KaiC IstB_IS21 PF01695.17 gi|134046787|ref|YP_001098272.1| - 0.0044 16.8 0.0 0.0085 15.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|134046787|ref|YP_001098272.1| - 0.0057 17.2 0.0 0.016 15.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|134046787|ref|YP_001098272.1| - 0.006 16.3 0.0 0.15 11.7 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|134046787|ref|YP_001098272.1| - 0.0074 15.7 0.0 0.019 14.3 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|134046787|ref|YP_001098272.1| - 0.0081 15.9 0.2 0.024 14.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|134046787|ref|YP_001098272.1| - 0.009 16.2 0.0 0.019 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.11 gi|134046787|ref|YP_001098272.1| - 0.01 15.7 0.0 0.023 14.5 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|134046787|ref|YP_001098272.1| - 0.013 15.8 0.0 0.026 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|134046787|ref|YP_001098272.1| - 0.021 15.2 0.1 0.068 13.6 0.0 1.9 2 0 0 2 2 1 0 RNA helicase AAA_7 PF12775.7 gi|134046787|ref|YP_001098272.1| - 0.022 14.3 0.1 0.092 12.3 0.1 1.9 1 1 0 1 1 1 0 P-loop containing dynein motor region Bac_DnaA PF00308.18 gi|134046787|ref|YP_001098272.1| - 0.043 13.6 1.0 0.14 12.0 0.1 2.2 2 1 0 2 2 2 0 Bacterial dnaA protein Zeta_toxin PF06414.12 gi|134046787|ref|YP_001098272.1| - 0.072 12.4 0.1 0.16 11.2 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin TsaE PF02367.17 gi|134046787|ref|YP_001098272.1| - 0.072 13.1 0.1 0.19 11.7 0.0 1.7 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|134046787|ref|YP_001098272.1| - 0.074 12.6 0.1 0.24 10.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|134046787|ref|YP_001098272.1| - 0.076 12.4 0.8 0.12 11.8 0.1 1.6 2 0 0 2 2 2 0 PhoH-like protein YabA PF06156.13 gi|134046787|ref|YP_001098272.1| - 0.081 13.6 0.7 0.64 10.7 1.3 2.2 2 0 0 2 2 2 0 Initiation control protein YabA Parvo_NS1 PF01057.17 gi|134046787|ref|YP_001098272.1| - 0.088 11.9 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 TSC22 PF01166.18 gi|134046787|ref|YP_001098272.1| - 0.092 13.1 5.2 10 6.5 0.6 3.7 2 1 1 3 3 3 0 TSC-22/dip/bun family Cnn_1N PF07989.11 gi|134046787|ref|YP_001098272.1| - 0.14 12.4 7.6 0.39 10.9 7.6 1.8 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 bZIP_1 PF00170.21 gi|134046787|ref|YP_001098272.1| - 0.39 10.8 8.8 0.89 9.7 8.8 1.6 1 0 0 1 1 1 0 bZIP transcription factor NRBF2 PF08961.10 gi|134046787|ref|YP_001098272.1| - 0.67 9.5 4.8 1.2 8.6 4.8 1.3 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator DivIC PF04977.15 gi|134046787|ref|YP_001098272.1| - 3.4 7.5 6.0 16 5.4 6.0 2.1 1 1 0 1 1 1 0 Septum formation initiator HTH_3 PF01381.22 gi|134046788|ref|YP_001098273.1| - 3.2e-13 49.5 0.3 1.1e-12 47.8 0.6 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|134046788|ref|YP_001098273.1| - 3.9e-10 39.6 1.1 8.6e-10 38.5 1.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|134046788|ref|YP_001098273.1| - 3.2e-07 30.6 0.0 5.6e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|134046788|ref|YP_001098273.1| - 9.6e-07 28.6 0.6 1.6e-06 27.8 0.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|134046788|ref|YP_001098273.1| - 0.0035 17.7 0.1 0.0087 16.5 0.1 1.7 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_35 PF13693.6 gi|134046788|ref|YP_001098273.1| - 0.022 14.8 0.0 0.046 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|134046788|ref|YP_001098273.1| - 0.054 13.0 0.1 0.45 10.1 0.3 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|134046788|ref|YP_001098273.1| - 0.062 13.2 0.1 12 5.9 0.0 2.6 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family DUF4428 PF14471.6 gi|134046788|ref|YP_001098273.1| - 0.072 13.0 1.4 0.18 11.7 1.4 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) BROMI PF14961.6 gi|134046788|ref|YP_001098273.1| - 0.19 9.1 0.1 0.21 9.0 0.1 1.0 1 0 0 1 1 1 0 Broad-minded protein NMD3 PF04981.13 gi|134046788|ref|YP_001098273.1| - 0.58 9.6 3.7 0.79 9.1 0.8 1.9 1 1 0 2 2 2 0 NMD3 family AA_kinase PF00696.28 gi|134046789|ref|YP_001098274.1| - 5.2e-35 121.2 0.0 6e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family Peroxin-22 PF12827.7 gi|134046789|ref|YP_001098274.1| - 0.0097 15.8 0.3 0.34 10.8 0.3 2.4 1 1 0 1 1 1 1 Peroxisomal biogenesis protein family DUF2099 PF09872.9 gi|134046790|ref|YP_001098275.1| - 7.7e-109 362.8 0.7 8.8e-109 362.6 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) SepF PF04472.12 gi|134046791|ref|YP_001098276.1| - 4e-11 43.0 0.1 5.5e-11 42.6 0.1 1.2 1 0 0 1 1 1 1 Cell division protein SepF MMR_HSR1 PF01926.23 gi|134046792|ref|YP_001098277.1| - 2.2e-18 66.4 0.1 3e-18 66.0 0.1 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|134046792|ref|YP_001098277.1| - 5e-13 48.9 0.0 6.7e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|134046792|ref|YP_001098277.1| - 2.2e-09 37.6 0.6 0.00012 22.2 0.9 2.2 1 1 0 2 2 2 2 Dynamin family Gtr1_RagA PF04670.12 gi|134046792|ref|YP_001098277.1| - 2.3e-08 33.7 0.1 2.9e-08 33.4 0.1 1.1 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region RsgA_GTPase PF03193.16 gi|134046792|ref|YP_001098277.1| - 3.4e-06 27.1 0.6 0.014 15.3 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|134046792|ref|YP_001098277.1| - 5e-06 26.2 0.0 9.7e-05 22.0 0.0 2.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|134046792|ref|YP_001098277.1| - 1.7e-05 24.3 0.1 0.00016 21.2 0.1 2.1 1 1 0 1 1 1 1 ADP-ribosylation factor family Roc PF08477.13 gi|134046792|ref|YP_001098277.1| - 2.4e-05 24.6 0.2 0.0003 21.0 0.2 2.1 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|134046792|ref|YP_001098277.1| - 0.00059 19.6 0.0 0.046 13.5 0.0 2.2 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Septin PF00735.18 gi|134046792|ref|YP_001098277.1| - 0.00062 19.1 0.2 0.011 15.0 0.0 2.0 2 0 0 2 2 2 1 Septin MMR_HSR1_Xtn PF16897.5 gi|134046792|ref|YP_001098277.1| - 0.00062 19.7 0.0 0.0013 18.7 0.0 1.5 1 1 0 1 1 1 1 C-terminal region of MMR_HSR1 domain cobW PF02492.19 gi|134046792|ref|YP_001098277.1| - 0.0013 18.4 0.0 0.0068 16.0 0.0 1.9 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AIG1 PF04548.16 gi|134046792|ref|YP_001098277.1| - 0.0031 16.9 0.2 0.0089 15.4 0.1 1.7 2 0 0 2 2 2 1 AIG1 family G-alpha PF00503.20 gi|134046792|ref|YP_001098277.1| - 0.004 16.4 0.5 1.1 8.4 0.0 2.2 2 0 0 2 2 2 2 G-protein alpha subunit AAA_15 PF13175.6 gi|134046792|ref|YP_001098277.1| - 0.012 15.4 2.8 0.018 14.8 2.8 1.5 1 1 0 1 1 1 0 AAA ATPase domain Ras PF00071.22 gi|134046792|ref|YP_001098277.1| - 0.019 14.6 0.3 2.6 7.6 0.0 2.3 2 0 0 2 2 2 0 Ras family TniB PF05621.11 gi|134046792|ref|YP_001098277.1| - 0.022 14.1 0.1 2.1 7.7 0.0 2.4 1 1 1 2 2 2 0 Bacterial TniB protein ABC_tran PF00005.27 gi|134046792|ref|YP_001098277.1| - 0.029 14.9 0.3 0.05 14.1 0.2 1.3 1 1 0 1 1 1 0 ABC transporter NOG1 PF06858.14 gi|134046792|ref|YP_001098277.1| - 0.042 13.6 0.5 0.1 12.4 0.2 1.9 2 1 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) ATP_bind_1 PF03029.17 gi|134046792|ref|YP_001098277.1| - 0.11 12.2 0.1 2.1 8.1 0.0 2.5 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Hydrolase PF00702.26 gi|134046793|ref|YP_001098278.1| - 3.6e-16 60.1 0.0 2.8e-15 57.2 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|134046793|ref|YP_001098278.1| - 6.8e-05 23.0 0.1 0.00098 19.3 0.1 2.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|134046793|ref|YP_001098278.1| - 0.0016 18.2 1.4 0.28 10.9 0.7 2.5 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase AdoMet_Synthase PF01941.19 gi|134046794|ref|YP_001098279.1| - 3.1e-173 576.1 5.5 3.5e-173 575.9 5.5 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|134046794|ref|YP_001098279.1| - 0.046 14.4 1.3 0.14 12.8 0.3 2.4 2 1 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain DUF3381 PF11861.8 gi|134046794|ref|YP_001098279.1| - 0.046 13.5 0.5 0.085 12.7 0.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3381) FKBP_N_2 PF18023.1 gi|134046794|ref|YP_001098279.1| - 0.11 12.6 0.8 0.29 11.2 0.3 2.0 2 0 0 2 2 2 0 BDBT FKBP like N-terminal Phos_pyr_kin PF08543.12 gi|134046795|ref|YP_001098280.1| - 3.4e-51 174.0 0.0 8.1e-51 172.8 0.0 1.6 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|134046795|ref|YP_001098280.1| - 2e-08 34.0 0.0 3.5e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase HK PF02110.15 gi|134046795|ref|YP_001098280.1| - 0.0009 18.7 0.0 0.0069 15.8 0.0 2.1 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family Radical_SAM PF04055.21 gi|134046796|ref|YP_001098281.1| - 8.4e-22 78.3 4.1 2e-19 70.6 2.8 2.8 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|134046796|ref|YP_001098281.1| - 0.012 15.8 6.0 0.81 9.8 0.0 3.4 2 1 1 3 3 3 0 4Fe-4S single cluster domain DUF169 PF02596.15 gi|134046797|ref|YP_001098282.1| - 1.7e-57 194.7 0.0 1.9e-57 194.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Glyco_hydro_45 PF02015.16 gi|134046797|ref|YP_001098282.1| - 0.13 12.2 0.1 4.8 7.0 0.0 2.2 2 0 0 2 2 2 0 Glycosyl hydrolase family 45 MCR_gamma PF02240.16 gi|134046797|ref|YP_001098282.1| - 0.19 10.9 0.0 0.28 10.4 0.0 1.2 1 0 0 1 1 1 0 Methyl-coenzyme M reductase gamma subunit MFS_1 PF07690.16 gi|134046798|ref|YP_001098283.1| - 3.4e-60 203.8 78.1 1.2e-48 165.9 54.2 2.6 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|134046798|ref|YP_001098283.1| - 6.7e-07 28.5 17.3 6.7e-07 28.5 17.3 3.0 2 2 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|134046798|ref|YP_001098283.1| - 3.3e-05 22.5 3.7 3.3e-05 22.5 3.7 2.3 2 0 0 2 2 2 1 Transmembrane secretion effector MFS_1_like PF12832.7 gi|134046798|ref|YP_001098283.1| - 0.00037 19.5 0.3 0.00037 19.5 0.3 3.7 3 1 1 4 4 4 2 MFS_1 like family DUF2512 PF10710.9 gi|134046798|ref|YP_001098283.1| - 6.4 6.4 13.8 10 5.8 7.0 3.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2512) Thioredoxin_3 PF13192.6 gi|134046799|ref|YP_001098284.1| - 2e-16 59.8 0.7 2.3e-16 59.6 0.7 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|134046799|ref|YP_001098284.1| - 1.4e-13 50.9 0.1 1.9e-13 50.4 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.20 gi|134046799|ref|YP_001098284.1| - 2e-08 34.2 0.1 2.3e-08 33.9 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|134046799|ref|YP_001098284.1| - 5.2e-08 32.9 0.1 0.0018 18.1 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|134046799|ref|YP_001098284.1| - 5.3e-07 29.9 0.4 0.016 15.4 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin DUF1223 PF06764.11 gi|134046799|ref|YP_001098284.1| - 0.00028 21.0 0.0 0.0015 18.6 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1223) DUF836 PF05768.14 gi|134046799|ref|YP_001098284.1| - 0.0012 19.3 0.0 0.0012 19.2 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) TraF PF13728.6 gi|134046799|ref|YP_001098284.1| - 0.011 15.6 0.0 0.014 15.3 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein KaiB PF07689.12 gi|134046799|ref|YP_001098284.1| - 0.046 13.5 0.1 0.064 13.0 0.1 1.2 1 0 0 1 1 1 0 KaiB domain Thioredoxin_2 PF13098.6 gi|134046799|ref|YP_001098284.1| - 0.065 13.7 0.1 0.2 12.1 0.1 1.8 1 1 0 1 1 1 0 Thioredoxin-like domain DrsE PF02635.15 gi|134046800|ref|YP_001098285.1| - 3.8e-18 65.9 0.0 9e-18 64.7 0.0 1.6 2 0 0 2 2 2 1 DsrE/DsrF-like family TusA PF01206.17 gi|134046800|ref|YP_001098285.1| - 1.4e-17 63.2 0.1 4.6e-13 48.8 0.0 2.3 2 0 0 2 2 2 2 Sulfurtransferase TusA DrsE_2 PF13686.6 gi|134046800|ref|YP_001098285.1| - 5.4e-11 42.6 0.8 0.00024 21.0 0.0 2.6 2 1 1 3 3 3 2 DsrE/DsrF/DrsH-like family DUF4971 PF16341.5 gi|134046800|ref|YP_001098285.1| - 0.046 13.6 0.0 4.9 7.0 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4971) UPF0180 PF03698.13 gi|134046800|ref|YP_001098285.1| - 0.06 13.5 3.0 0.26 11.5 0.3 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) AMP-binding_C_2 PF14535.6 gi|134046800|ref|YP_001098285.1| - 0.11 12.9 1.1 0.28 11.5 0.1 2.2 2 1 0 2 2 2 0 AMP-binding enzyme C-terminal domain DUF5400 PF17379.2 gi|134046801|ref|YP_001098286.1| - 1.2e-43 147.7 14.6 1.3e-43 147.5 14.6 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5400) ECF_trnsprt PF12822.7 gi|134046802|ref|YP_001098287.1| - 6.3e-10 39.4 28.4 8.7e-10 39.0 28.4 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component ECF-ribofla_trS PF07155.12 gi|134046802|ref|YP_001098287.1| - 3.3e-06 27.2 19.7 5e-06 26.6 19.7 1.4 1 1 0 1 1 1 1 ECF-type riboflavin transporter, S component 5TM-5TMR_LYT PF07694.12 gi|134046802|ref|YP_001098287.1| - 0.042 13.4 17.7 0.044 13.3 16.7 1.6 1 1 0 1 1 1 0 5TMR of 5TMR-LYT Vut_1 PF02592.15 gi|134046802|ref|YP_001098287.1| - 0.15 12.4 11.9 0.65 10.3 11.9 1.9 1 1 0 1 1 1 0 Putative vitamin uptake transporter ECF_trnsprt PF12822.7 gi|134046803|ref|YP_001098288.1| - 1.2e-07 32.0 20.7 1.5e-07 31.7 20.7 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component ECF-ribofla_trS PF07155.12 gi|134046803|ref|YP_001098288.1| - 1e-06 28.8 15.8 1.4e-06 28.4 15.8 1.2 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component 5TM-5TMR_LYT PF07694.12 gi|134046803|ref|YP_001098288.1| - 3.1e-06 26.8 9.5 4e-06 26.4 9.5 1.2 1 0 0 1 1 1 1 5TMR of 5TMR-LYT Gly-zipper_Omp PF13488.6 gi|134046803|ref|YP_001098288.1| - 1.2 9.2 8.7 8.5 6.5 0.6 3.5 2 1 0 2 2 2 0 Glycine zipper PAP2 PF01569.21 gi|134046804|ref|YP_001098289.1| - 3.1e-27 95.0 4.0 4.6e-27 94.4 4.0 1.3 1 0 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.6 gi|134046804|ref|YP_001098289.1| - 9.4e-09 35.2 7.7 3.9e-08 33.2 7.7 1.9 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|134046804|ref|YP_001098289.1| - 0.0015 19.0 1.6 0.0015 19.0 1.6 2.3 2 0 0 2 2 2 1 PAP2 superfamily C-terminal Rhomboid PF01694.22 gi|134046804|ref|YP_001098289.1| - 0.02 14.9 5.1 0.037 14.0 4.7 1.5 1 1 0 1 1 1 0 Rhomboid family DUF4191 PF13829.6 gi|134046804|ref|YP_001098289.1| - 1.4 8.3 3.3 5.8 6.2 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) DUF2070 PF09843.9 gi|134046804|ref|YP_001098289.1| - 3.7 5.7 11.1 4.5 5.4 11.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|134046805|ref|YP_001098290.1| - 7.2e-52 175.5 0.3 1.1e-27 97.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|134046805|ref|YP_001098290.1| - 6.7e-12 45.8 5.8 0.028 14.2 0.0 4.4 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|134046805|ref|YP_001098290.1| - 3.8e-09 36.9 6.5 0.018 15.3 2.4 4.5 3 2 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 gi|134046805|ref|YP_001098290.1| - 4.5e-09 36.4 1.2 0.0018 18.2 0.2 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 gi|134046805|ref|YP_001098290.1| - 2.5e-07 30.3 0.4 0.032 14.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.19 gi|134046805|ref|YP_001098290.1| - 6.7e-07 29.0 3.7 0.0039 16.6 0.0 3.8 2 2 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|134046805|ref|YP_001098290.1| - 2.7e-06 27.9 0.0 0.037 14.4 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain Rad17 PF03215.15 gi|134046805|ref|YP_001098290.1| - 5.2e-06 26.5 0.1 0.083 12.8 0.0 2.6 2 0 0 2 2 2 2 Rad17 P-loop domain SbcCD_C PF13558.6 gi|134046805|ref|YP_001098290.1| - 4e-05 23.8 0.1 0.0072 16.5 0.0 3.2 3 1 0 3 3 2 1 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|134046805|ref|YP_001098290.1| - 6.7e-05 23.4 1.7 0.31 11.6 0.5 3.9 3 1 0 3 3 3 1 AAA domain AAA PF00004.29 gi|134046805|ref|YP_001098290.1| - 0.00039 20.9 0.4 5.5 7.4 0.0 4.1 4 1 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|134046805|ref|YP_001098290.1| - 0.00059 20.1 0.3 0.25 11.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|134046805|ref|YP_001098290.1| - 0.00074 20.1 4.9 0.48 10.9 2.4 2.7 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|134046805|ref|YP_001098290.1| - 0.00087 19.1 0.8 1.2 8.8 0.4 2.7 2 1 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|134046805|ref|YP_001098290.1| - 0.00098 18.9 0.5 0.97 9.1 0.0 3.8 4 0 0 4 4 4 1 IstB-like ATP binding protein AAA_15 PF13175.6 gi|134046805|ref|YP_001098290.1| - 0.001 18.9 4.1 6.3 6.4 0.0 3.3 2 1 0 3 3 3 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|134046805|ref|YP_001098290.1| - 0.0012 18.9 2.4 0.031 14.4 0.2 3.4 3 1 0 3 3 3 1 50S ribosome-binding GTPase PhoH PF02562.16 gi|134046805|ref|YP_001098290.1| - 0.0015 18.0 0.1 1.1 8.6 0.0 2.6 2 0 0 2 2 2 1 PhoH-like protein NB-ARC PF00931.22 gi|134046805|ref|YP_001098290.1| - 0.0035 16.6 0.2 1.2 8.3 0.1 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_24 PF13479.6 gi|134046805|ref|YP_001098290.1| - 0.018 14.8 4.0 0.77 9.5 0.2 3.4 4 0 0 4 4 3 0 AAA domain AAA_14 PF13173.6 gi|134046805|ref|YP_001098290.1| - 0.018 15.1 0.5 16 5.5 0.0 3.6 4 0 0 4 4 3 0 AAA domain Roc PF08477.13 gi|134046805|ref|YP_001098290.1| - 0.018 15.2 0.3 0.99 9.6 0.1 2.7 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ALC PF17527.2 gi|134046805|ref|YP_001098290.1| - 0.02 14.5 0.2 0.044 13.4 0.2 1.5 1 0 0 1 1 1 0 Phage ALC protein MobB PF03205.14 gi|134046805|ref|YP_001098290.1| - 0.033 14.1 1.1 0.24 11.3 0.2 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.6 gi|134046805|ref|YP_001098290.1| - 0.037 12.7 0.2 2 6.9 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_7 PF12775.7 gi|134046805|ref|YP_001098290.1| - 0.041 13.4 0.2 3.2 7.2 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region Cytidylate_kin PF02224.18 gi|134046805|ref|YP_001098290.1| - 0.044 13.5 0.0 6.1 6.5 0.1 2.5 2 0 0 2 2 2 0 Cytidylate kinase Rota_NSP4 PF01452.16 gi|134046805|ref|YP_001098290.1| - 0.055 13.1 0.9 0.6 9.8 0.2 2.4 2 0 0 2 2 2 0 Rotavirus non structural protein PRK PF00485.18 gi|134046805|ref|YP_001098290.1| - 0.081 12.6 0.0 2.1 8.0 0.1 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DLIC PF05783.11 gi|134046805|ref|YP_001098290.1| - 0.099 11.4 0.5 3 6.6 0.2 2.3 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) TsaE PF02367.17 gi|134046805|ref|YP_001098290.1| - 0.12 12.4 0.3 1.1 9.3 0.1 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|134046805|ref|YP_001098290.1| - 0.17 12.1 2.4 6.3 7.0 0.5 2.8 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|134046805|ref|YP_001098290.1| - 0.17 12.3 0.4 27 5.2 0.0 2.6 2 0 0 2 2 2 0 RNA helicase DUF87 PF01935.17 gi|134046805|ref|YP_001098290.1| - 0.22 11.6 4.8 5.9 6.9 0.3 3.4 2 1 1 3 3 3 0 Helicase HerA, central domain ATP-synt_ab PF00006.25 gi|134046805|ref|YP_001098290.1| - 0.25 11.0 0.3 4.8 6.8 0.2 2.5 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.12 gi|134046805|ref|YP_001098290.1| - 0.36 10.7 2.0 10 6.0 0.6 2.6 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 gi|134046805|ref|YP_001098290.1| - 0.76 9.8 3.6 6.2 6.8 0.1 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|134046805|ref|YP_001098290.1| - 0.9 9.9 4.1 17 5.7 0.1 3.1 3 2 0 3 3 3 0 AAA domain Oxidored_q2 PF00420.24 gi|134046806|ref|YP_001098291.1| - 2.6e-24 84.9 5.0 3.2e-24 84.6 5.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|134046806|ref|YP_001098291.1| - 0.0026 17.7 5.1 0.0026 17.7 5.1 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) DUF4418 PF14387.6 gi|134046806|ref|YP_001098291.1| - 2.8 8.2 6.4 2.7 8.2 3.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4418) Proton_antipo_M PF00361.20 gi|134046807|ref|YP_001098292.1| - 1.1e-46 159.4 20.5 1.1e-46 159.4 20.5 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|134046807|ref|YP_001098292.1| - 5.8e-13 48.7 9.0 5.8e-13 48.7 9.0 2.3 1 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Tim17 PF02466.19 gi|134046807|ref|YP_001098292.1| - 1.5 9.3 6.2 0.22 11.9 1.0 2.3 3 0 0 3 3 3 0 Tim17/Tim22/Tim23/Pmp24 family DuoxA PF10204.9 gi|134046808|ref|YP_001098293.1| - 0.0026 16.8 1.6 0.0028 16.7 1.6 1.0 1 0 0 1 1 1 1 Dual oxidase maturation factor DUF1700 PF08006.11 gi|134046808|ref|YP_001098293.1| - 0.0034 16.9 1.5 0.004 16.7 1.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1700) PhoLip_ATPase_N PF16209.5 gi|134046808|ref|YP_001098293.1| - 0.0096 15.6 1.4 0.0096 15.6 1.4 1.6 1 1 1 2 2 2 1 Phospholipid-translocating ATPase N-terminal MnhB PF04039.13 gi|134046809|ref|YP_001098294.1| - 4.5e-20 72.2 13.5 4.5e-20 72.2 13.5 2.1 2 1 1 3 3 3 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|134046809|ref|YP_001098294.1| - 0.049 13.2 0.4 0.12 11.9 0.4 1.7 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) DUF3938 PF13074.6 gi|134046810|ref|YP_001098295.1| - 0.021 15.1 1.6 0.025 14.8 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3938) TMEM107 PF14995.6 gi|134046810|ref|YP_001098295.1| - 0.11 12.9 1.4 0.14 12.6 1.4 1.1 1 0 0 1 1 1 0 Transmembrane protein DUF2964 PF11177.8 gi|134046810|ref|YP_001098295.1| - 0.19 11.9 2.1 0.35 11.1 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) Fer4 PF00037.27 gi|134046811|ref|YP_001098296.1| - 3.1e-73 238.9 150.6 2.1e-08 33.6 3.8 14.8 15 0 0 15 15 15 14 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134046811|ref|YP_001098296.1| - 4.5e-52 174.4 120.4 8.2e-10 39.1 7.7 10.4 5 4 6 11 11 11 11 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134046811|ref|YP_001098296.1| - 2e-44 149.5 126.1 5.4e-08 32.9 7.7 10.1 5 3 6 12 12 12 12 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134046811|ref|YP_001098296.1| - 6.3e-41 139.2 123.5 0.00085 20.2 3.3 14.5 10 5 5 15 15 15 15 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|134046811|ref|YP_001098296.1| - 3e-39 132.9 138.2 6.5e-06 26.2 10.1 10.7 2 2 11 13 13 13 13 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134046811|ref|YP_001098296.1| - 1.2e-38 131.0 138.9 5.8e-08 32.7 10.7 9.9 4 3 7 11 11 11 11 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134046811|ref|YP_001098296.1| - 1.2e-35 120.1 157.2 0.0016 18.5 3.3 14.5 14 1 0 14 14 14 13 4Fe-4S binding domain Fer4_2 PF12797.7 gi|134046811|ref|YP_001098296.1| - 7.8e-35 116.8 136.9 0.0002 21.3 1.1 14.3 14 0 0 14 14 14 14 4Fe-4S binding domain Fer4_17 PF13534.6 gi|134046811|ref|YP_001098296.1| - 1.3e-20 73.7 134.7 0.00035 21.0 9.6 13.4 5 4 8 13 13 13 12 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134046811|ref|YP_001098296.1| - 2.5e-19 68.1 137.6 0.013 15.9 1.8 14.3 14 0 0 14 14 14 12 4Fe-4S binding domain Fer4_8 PF13183.6 gi|134046811|ref|YP_001098296.1| - 3.1e-19 69.2 133.7 0.00069 20.0 8.4 12.8 6 4 5 11 11 11 8 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|134046811|ref|YP_001098296.1| - 1.3e-18 66.5 157.9 0.0068 17.3 3.7 14.2 14 0 0 14 14 14 13 4Fe-4S binding domain Fer4_18 PF13746.6 gi|134046811|ref|YP_001098296.1| - 2.4e-14 53.5 127.1 0.0044 17.2 1.4 10.5 2 2 7 9 9 9 8 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|134046811|ref|YP_001098296.1| - 3.6e-10 40.2 127.9 0.0085 16.6 4.3 14.3 14 0 0 14 14 14 8 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|134046811|ref|YP_001098296.1| - 0.00089 20.0 116.8 0.14 12.9 0.4 14.8 10 5 2 13 13 13 7 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|134046811|ref|YP_001098296.1| - 0.0027 18.5 120.0 0.012 16.4 7.0 13.0 8 3 3 12 12 12 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|134046812|ref|YP_001098297.1| - 2.3e-14 52.5 11.3 4.2e-07 29.5 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|134046812|ref|YP_001098297.1| - 5e-10 39.8 8.9 7.4e-10 39.3 8.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|134046812|ref|YP_001098297.1| - 5.4e-10 39.2 17.7 1.2e-07 31.7 10.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|134046812|ref|YP_001098297.1| - 1.1e-08 35.0 17.3 3.3e-06 27.1 8.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134046812|ref|YP_001098297.1| - 7.8e-08 32.1 11.0 1.6e-05 24.7 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|134046812|ref|YP_001098297.1| - 2e-07 31.4 1.7 0.01 16.3 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134046812|ref|YP_001098297.1| - 2.3e-07 30.9 9.1 5.8e-07 29.6 9.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|134046812|ref|YP_001098297.1| - 3e-07 30.9 1.4 0.0036 17.8 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|134046812|ref|YP_001098297.1| - 3e-06 28.1 8.8 6e-05 23.9 9.7 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|134046812|ref|YP_001098297.1| - 5.5e-06 26.1 13.3 0.0088 16.1 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|134046812|ref|YP_001098297.1| - 1.3e-05 25.3 10.9 0.0018 18.6 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|134046812|ref|YP_001098297.1| - 0.00015 22.5 1.7 0.033 15.0 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|134046812|ref|YP_001098297.1| - 0.0079 16.7 8.5 0.78 10.3 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|134046812|ref|YP_001098297.1| - 0.17 12.1 5.5 2.4 8.4 0.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|134046812|ref|YP_001098297.1| - 0.88 10.4 9.0 5.3 7.8 0.1 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain Oxidored_q6 PF01058.22 gi|134046813|ref|YP_001098298.1| - 2.7e-26 91.9 1.0 3.3e-26 91.7 1.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Peptidase_C28 PF05408.11 gi|134046813|ref|YP_001098298.1| - 0.09 12.5 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Foot-and-mouth virus L-proteinase NADHdh PF00146.21 gi|134046814|ref|YP_001098299.1| - 1.2e-16 61.0 22.6 2e-09 37.2 11.7 2.0 2 0 0 2 2 2 2 NADH dehydrogenase LapA_dom PF06305.11 gi|134046815|ref|YP_001098300.1| - 0.55 10.1 8.0 1.4 8.7 0.3 2.4 2 1 0 2 2 2 0 Lipopolysaccharide assembly protein A domain SPC12 PF06645.13 gi|134046815|ref|YP_001098300.1| - 2.2 8.5 10.4 4.5 7.4 2.6 2.3 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Phage_holin_Dp1 PF16938.5 gi|134046815|ref|YP_001098300.1| - 4.3 7.6 11.2 0.08 13.2 3.9 2.1 2 1 0 2 2 2 0 Putative phage holin Dp-1 MoeA_N PF03453.17 gi|134046816|ref|YP_001098301.1| - 1.1e-37 129.2 0.0 1.7e-37 128.6 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|134046816|ref|YP_001098301.1| - 1e-29 103.0 0.1 2.3e-29 101.9 0.1 1.5 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|134046816|ref|YP_001098301.1| - 2.6e-15 56.4 0.0 7.1e-15 55.0 0.0 1.8 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) 7TMR-HDED PF07697.11 gi|134046816|ref|YP_001098301.1| - 0.055 13.6 0.1 0.24 11.5 0.0 2.0 2 0 0 2 2 2 0 7TM-HD extracellular IF-2B PF01008.17 gi|134046817|ref|YP_001098302.1| - 1.8e-75 253.7 0.0 2.3e-75 253.4 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family BssC_TutF PF08201.11 gi|134046817|ref|YP_001098302.1| - 0.075 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 BssC/TutF protein tRNA-synt_2 PF00152.20 gi|134046818|ref|YP_001098303.1| - 1.2e-90 303.8 0.2 1.4e-90 303.5 0.2 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|134046818|ref|YP_001098303.1| - 4.6e-15 55.4 0.3 8.4e-15 54.5 0.3 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|134046818|ref|YP_001098303.1| - 0.00055 19.5 0.2 0.088 12.3 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) DUF4539 PF15072.6 gi|134046818|ref|YP_001098303.1| - 0.02 14.9 0.0 0.05 13.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4539) FeS_assembly_P PF01883.19 gi|134046819|ref|YP_001098304.1| - 7.5e-22 77.3 0.6 9e-22 77.0 0.6 1.1 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein EAP30 PF04157.16 gi|134046819|ref|YP_001098304.1| - 0.046 13.0 0.0 0.048 12.9 0.0 1.0 1 0 0 1 1 1 0 EAP30/Vps36 family tRNA-synt_His PF13393.6 gi|134046820|ref|YP_001098305.1| - 6.2e-67 226.1 0.0 7.8e-67 225.7 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|134046820|ref|YP_001098305.1| - 6.7e-16 58.2 2.0 2.9e-15 56.2 0.1 2.5 2 1 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|134046820|ref|YP_001098305.1| - 7.5e-11 42.3 0.0 2e-10 40.9 0.0 1.9 1 1 1 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|134046820|ref|YP_001098305.1| - 2.3e-07 30.2 2.5 4.4e-05 22.7 1.1 2.7 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|134046820|ref|YP_001098305.1| - 4.8e-05 23.0 0.0 8.2e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Suppressor_P21 PF11479.8 gi|134046820|ref|YP_001098305.1| - 0.019 15.1 0.5 0.94 9.7 0.0 2.5 2 0 0 2 2 2 0 RNA silencing suppressor P21 C-terminal domain Alba PF01918.21 gi|134046821|ref|YP_001098306.1| - 6.1e-20 70.8 2.2 8.5e-20 70.4 2.2 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|134046821|ref|YP_001098306.1| - 0.00094 19.1 0.9 0.0011 18.9 0.7 1.4 1 1 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P Ocnus PF05005.15 gi|134046821|ref|YP_001098306.1| - 0.088 12.9 0.5 0.11 12.7 0.5 1.1 1 0 0 1 1 1 0 Janus/Ocnus family (Ocnus) Pkinase PF00069.25 gi|134046822|ref|YP_001098307.1| - 5.9e-07 29.1 0.8 8e-07 28.7 0.8 1.2 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.22 gi|134046822|ref|YP_001098307.1| - 0.0013 18.3 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase_Tyr PF07714.17 gi|134046822|ref|YP_001098307.1| - 0.014 14.7 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein tyrosine kinase Kdo PF06293.14 gi|134046822|ref|YP_001098307.1| - 0.067 12.5 0.0 0.094 12.0 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family PAC2 PF09754.9 gi|134046823|ref|YP_001098308.1| - 5.5e-47 160.5 0.0 6.3e-47 160.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family FTR_C PF02741.15 gi|134046825|ref|YP_001098310.1| - 1.2e-65 220.1 3.3 1.9e-65 219.4 3.3 1.3 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.18 gi|134046825|ref|YP_001098310.1| - 3.5e-61 205.3 0.4 6.1e-61 204.5 0.1 1.6 2 0 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase Rubrerythrin PF02915.17 gi|134046826|ref|YP_001098311.1| - 2.7e-08 34.3 2.8 3.8e-08 33.8 2.8 1.2 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|134046826|ref|YP_001098311.1| - 0.004 17.5 1.3 0.0097 16.2 0.4 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF2383) Mn_catalase PF05067.12 gi|134046826|ref|YP_001098311.1| - 0.023 13.7 0.3 0.026 13.5 0.3 1.0 1 0 0 1 1 1 0 Manganese containing catalase Ferritin PF00210.24 gi|134046826|ref|YP_001098311.1| - 0.029 14.3 1.7 0.04 13.8 1.7 1.4 1 1 0 1 1 1 0 Ferritin-like domain DUF99 PF01949.16 gi|134046827|ref|YP_001098312.1| - 2.1e-55 187.0 0.0 2.3e-55 186.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DUF1188 PF06690.11 gi|134046827|ref|YP_001098312.1| - 0.0032 17.0 1.0 1.1 8.7 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1188) DFP PF04127.15 gi|134046828|ref|YP_001098313.1| - 1.1e-49 168.9 0.1 4.9e-49 166.7 0.0 2.1 2 1 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|134046828|ref|YP_001098313.1| - 6.8e-29 100.6 3.1 8e-29 100.4 1.8 1.7 2 0 0 2 2 2 1 Flavoprotein NmrA PF05368.13 gi|134046828|ref|YP_001098313.1| - 0.064 12.8 0.0 0.17 11.4 0.0 1.7 1 0 0 1 1 1 0 NmrA-like family Glyco_tran_WecB PF03808.13 gi|134046828|ref|YP_001098313.1| - 0.11 12.5 0.1 14 5.6 0.0 2.7 3 0 0 3 3 3 0 Glycosyl transferase WecB/TagA/CpsF family PK PF00224.21 gi|134046829|ref|YP_001098314.1| - 5.9e-81 272.1 9.3 4.9e-80 269.0 9.3 2.0 1 1 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|134046829|ref|YP_001098314.1| - 2.2e-20 73.0 0.4 1.2e-19 70.6 0.0 2.4 3 1 0 3 3 3 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|134046829|ref|YP_001098314.1| - 3.4e-06 26.4 0.2 8.2e-06 25.1 0.0 1.6 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family DUF4013 PF13197.6 gi|134046830|ref|YP_001098315.1| - 1.9e-20 73.4 25.1 1.9e-20 73.4 25.1 3.0 1 1 2 3 3 3 2 Protein of unknown function (DUF4013) DUF2207 PF09972.9 gi|134046830|ref|YP_001098315.1| - 0.0028 16.5 3.3 0.0028 16.5 3.3 3.1 1 1 1 2 2 2 1 Predicted membrane protein (DUF2207) HcyBio PF01837.16 gi|134046831|ref|YP_001098316.1| - 5.9e-85 285.2 0.0 6.7e-85 285.0 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4_9 PF13187.6 gi|134046831|ref|YP_001098316.1| - 0.00042 20.4 8.7 0.00098 19.2 8.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|134046831|ref|YP_001098316.1| - 0.00066 20.2 12.2 0.016 15.8 2.7 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|134046831|ref|YP_001098316.1| - 0.0016 18.8 3.6 0.0016 18.8 3.6 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|134046831|ref|YP_001098316.1| - 0.0024 18.3 3.8 0.16 12.4 0.8 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|134046831|ref|YP_001098316.1| - 0.014 15.6 1.4 0.031 14.5 1.4 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|134046831|ref|YP_001098316.1| - 0.015 15.4 7.1 0.033 14.3 7.1 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|134046831|ref|YP_001098316.1| - 0.028 14.5 14.6 0.28 11.3 3.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|134046831|ref|YP_001098316.1| - 0.08 12.8 17.0 0.098 12.5 3.1 3.4 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|134046831|ref|YP_001098316.1| - 0.16 12.1 14.2 0.12 12.5 11.2 2.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|134046831|ref|YP_001098316.1| - 0.22 11.7 12.6 0.42 10.8 3.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|134046831|ref|YP_001098316.1| - 1 10.4 13.7 1.1 10.2 1.9 2.9 1 1 3 4 4 4 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|134046831|ref|YP_001098316.1| - 1.1 9.8 12.1 0.93 10.1 2.1 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain PrmA PF06325.13 gi|134046833|ref|YP_001098318.1| - 5.5e-17 62.1 0.2 7.2e-17 61.7 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|134046833|ref|YP_001098318.1| - 7e-11 42.2 0.0 9.9e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|134046833|ref|YP_001098318.1| - 1.1e-08 35.0 0.1 1.6e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|134046833|ref|YP_001098318.1| - 1.4e-08 35.3 0.0 2.4e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|134046833|ref|YP_001098318.1| - 3.5e-07 30.8 0.0 7e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|134046833|ref|YP_001098318.1| - 5.5e-07 29.3 0.1 1.4e-06 28.0 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain RrnaAD PF00398.20 gi|134046833|ref|YP_001098318.1| - 5.6e-06 25.6 0.1 7.6e-06 25.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|134046833|ref|YP_001098318.1| - 0.00024 21.0 0.0 0.00038 20.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain PRMT5 PF05185.16 gi|134046833|ref|YP_001098318.1| - 0.00029 20.7 0.0 0.00048 20.0 0.0 1.3 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase Cons_hypoth95 PF03602.15 gi|134046833|ref|YP_001098318.1| - 0.0004 20.1 0.0 0.00076 19.2 0.0 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.7 gi|134046833|ref|YP_001098318.1| - 0.00047 20.1 0.0 0.00086 19.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|134046833|ref|YP_001098318.1| - 0.00054 19.5 0.0 0.00096 18.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|134046833|ref|YP_001098318.1| - 0.0017 18.1 0.0 0.0028 17.4 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.12 gi|134046833|ref|YP_001098318.1| - 0.0082 15.3 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_12 PF08242.12 gi|134046833|ref|YP_001098318.1| - 0.0083 16.9 0.0 0.014 16.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|134046833|ref|YP_001098318.1| - 0.024 13.9 0.0 0.042 13.2 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G tRNA_U5-meth_tr PF05958.11 gi|134046833|ref|YP_001098318.1| - 0.03 13.3 0.0 0.044 12.8 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DUF4382 PF14321.6 gi|134046833|ref|YP_001098318.1| - 0.064 13.5 0.4 0.3 11.3 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4382) Methyltransf_32 PF13679.6 gi|134046833|ref|YP_001098318.1| - 0.089 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain RimK PF08443.11 gi|134046834|ref|YP_001098319.1| - 1.1e-25 90.3 0.1 1.5e-25 89.9 0.1 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|134046834|ref|YP_001098319.1| - 3e-13 49.6 0.1 4.4e-13 49.0 0.1 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|134046834|ref|YP_001098319.1| - 1.8e-11 44.3 0.7 3.5e-11 43.4 0.7 1.5 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|134046834|ref|YP_001098319.1| - 1.7e-09 37.5 0.1 5.8e-09 35.8 0.1 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|134046834|ref|YP_001098319.1| - 2.4e-06 27.2 0.1 4.8e-06 26.2 0.1 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|134046834|ref|YP_001098319.1| - 4.6e-05 23.1 0.0 0.00012 21.7 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|134046834|ref|YP_001098319.1| - 0.00012 21.4 0.1 0.28 10.4 0.0 2.2 2 0 0 2 2 2 2 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|134046834|ref|YP_001098319.1| - 0.00013 21.3 0.6 0.37 10.0 0.1 2.4 1 1 2 3 3 3 2 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|134046834|ref|YP_001098319.1| - 0.014 14.9 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain TrkA_N PF02254.18 gi|134046835|ref|YP_001098320.1| - 2.1e-31 108.5 0.2 3.7e-31 107.8 0.2 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|134046835|ref|YP_001098320.1| - 2.1e-13 49.9 0.1 4.5e-13 48.8 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|134046835|ref|YP_001098320.1| - 0.00036 20.9 0.3 0.0016 18.9 0.1 2.0 2 1 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|134046835|ref|YP_001098320.1| - 0.00048 20.3 0.0 0.00075 19.7 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|134046835|ref|YP_001098320.1| - 0.00061 20.3 0.3 0.0085 16.7 0.5 2.3 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|134046835|ref|YP_001098320.1| - 0.0024 17.8 0.0 0.0039 17.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding UDPG_MGDP_dh_N PF03721.14 gi|134046835|ref|YP_001098320.1| - 0.0028 17.2 0.5 0.0069 16.0 0.2 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short PF00106.25 gi|134046835|ref|YP_001098320.1| - 0.0052 16.3 0.1 0.0084 15.6 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase AdoHcyase_NAD PF00670.21 gi|134046835|ref|YP_001098320.1| - 0.0096 16.0 0.8 0.019 15.0 0.8 1.5 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|134046835|ref|YP_001098320.1| - 0.015 15.0 0.2 0.036 13.7 0.1 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA adh_short_C2 PF13561.6 gi|134046835|ref|YP_001098320.1| - 0.016 14.7 0.1 0.024 14.2 0.1 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase 3HCDH_N PF02737.18 gi|134046835|ref|YP_001098320.1| - 0.02 14.8 0.3 0.034 14.0 0.1 1.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|134046835|ref|YP_001098320.1| - 0.022 14.7 0.0 0.041 13.9 0.0 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_3 PF01494.19 gi|134046835|ref|YP_001098320.1| - 0.036 13.3 0.0 0.041 13.1 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain Shikimate_DH PF01488.20 gi|134046835|ref|YP_001098320.1| - 0.043 13.9 0.3 0.09 12.8 0.2 1.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase LpxI_N PF17930.1 gi|134046835|ref|YP_001098320.1| - 0.054 13.4 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 LpxI N-terminal domain Sacchrp_dh_NADP PF03435.18 gi|134046835|ref|YP_001098320.1| - 0.057 13.7 0.3 0.12 12.6 0.2 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|134046835|ref|YP_001098320.1| - 0.061 12.6 1.7 0.25 10.6 0.2 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|134046835|ref|YP_001098320.1| - 0.079 12.3 0.1 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KR PF08659.10 gi|134046835|ref|YP_001098320.1| - 0.14 12.0 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 KR domain Epimerase PF01370.21 gi|134046835|ref|YP_001098320.1| - 0.16 11.4 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family PrkA PF06798.12 gi|134046836|ref|YP_001098321.1| - 0.017 14.8 2.7 0.022 14.4 2.7 1.2 1 0 0 1 1 1 0 PrkA serine protein kinase C-terminal domain Phage_XkdX PF09693.10 gi|134046836|ref|YP_001098321.1| - 0.031 14.3 2.3 8.2 6.5 0.0 3.8 3 1 1 4 4 4 0 Phage uncharacterised protein (Phage_XkdX) CDT1 PF08839.11 gi|134046836|ref|YP_001098321.1| - 0.063 13.6 1.6 0.075 13.3 1.6 1.1 1 0 0 1 1 1 0 DNA replication factor CDT1 like RhoGAP-FF1 PF16512.5 gi|134046836|ref|YP_001098321.1| - 0.064 13.9 1.8 0.21 12.3 0.8 2.1 1 1 1 2 2 2 0 p190-A and -B Rho GAPs FF domain DCX PF03607.17 gi|134046836|ref|YP_001098321.1| - 0.093 12.9 0.2 0.15 12.2 0.2 1.3 1 0 0 1 1 1 0 Doublecortin COMPASS-Shg1 PF05205.12 gi|134046836|ref|YP_001098321.1| - 0.32 11.7 6.6 40 5.0 0.6 2.2 1 1 0 1 1 1 0 COMPASS (Complex proteins associated with Set1p) component shg1 DUF483 PF04467.12 gi|134046837|ref|YP_001098322.1| - 2.2e-58 195.5 0.9 3.6e-58 194.9 0.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF483) UBA_3 PF09288.10 gi|134046837|ref|YP_001098322.1| - 0.0013 18.5 0.0 0.0084 15.9 0.0 2.3 2 0 0 2 2 2 1 Fungal ubiquitin-associated domain PgpA PF04608.13 gi|134046838|ref|YP_001098323.1| - 4.1e-18 65.8 0.0 4.5e-18 65.6 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A Longin PF13774.6 gi|134046838|ref|YP_001098323.1| - 0.0086 16.1 0.0 0.57 10.3 0.0 2.2 2 0 0 2 2 2 2 Regulated-SNARE-like domain SpoIIM PF01944.17 gi|134046839|ref|YP_001098324.1| - 7.1e-20 71.6 17.0 9e-20 71.3 17.0 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M FHIPEP PF00771.20 gi|134046839|ref|YP_001098324.1| - 0.098 11.1 2.8 0.11 11.0 0.1 1.9 1 1 1 2 2 2 0 FHIPEP family Wzz PF02706.15 gi|134046839|ref|YP_001098324.1| - 0.41 11.0 0.1 0.41 11.0 0.1 3.1 3 0 0 3 3 3 0 Chain length determinant protein DHHC PF01529.20 gi|134046839|ref|YP_001098324.1| - 6.2 6.9 18.3 9 6.4 10.5 2.2 1 1 0 2 2 2 0 DHHC palmitoyltransferase DUF5591 PF17884.1 gi|134046840|ref|YP_001098325.1| - 5.5e-46 156.2 0.5 1.4e-45 155.0 0.5 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|134046840|ref|YP_001098325.1| - 4.9e-15 55.3 0.3 1e-14 54.2 0.3 1.6 1 0 0 1 1 1 1 PUA domain TGT PF01702.18 gi|134046840|ref|YP_001098325.1| - 2.9e-05 23.4 0.0 0.00014 21.1 0.0 1.9 1 1 1 2 2 2 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.6 gi|134046840|ref|YP_001098325.1| - 0.11 12.6 0.1 0.47 10.6 0.0 2.0 2 0 0 2 2 2 0 Patch-forming domain C2 of tRNA-guanine transglycosylase Sipho_Gp157 PF05565.11 gi|134046840|ref|YP_001098325.1| - 4.2 7.3 8.6 2 8.4 0.4 3.2 3 0 0 3 3 3 0 Siphovirus Gp157 CENP-F_leu_zip PF10473.9 gi|134046841|ref|YP_001098326.1| - 0.00072 19.6 1.0 0.024 14.6 0.7 2.4 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.12 gi|134046841|ref|YP_001098326.1| - 0.047 13.7 0.2 9 6.3 0.1 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Spc24 PF08286.11 gi|134046841|ref|YP_001098326.1| - 0.11 12.8 2.0 0.21 11.8 1.9 1.7 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Strep_SA_rep PF06696.11 gi|134046841|ref|YP_001098326.1| - 0.47 10.5 3.6 6.4 6.9 0.0 3.2 3 0 0 3 3 3 0 Streptococcal surface antigen repeat Ribosomal_L29 PF00831.23 gi|134046841|ref|YP_001098326.1| - 1.6 8.8 8.0 5.1 7.1 0.0 3.6 3 1 1 4 4 4 0 Ribosomal L29 protein DUF1743 PF08489.11 gi|134046842|ref|YP_001098327.1| - 1.8e-10 40.9 1.1 3.9e-07 30.1 0.1 3.4 2 1 0 2 2 2 2 Domain of unknown function (DUF1743) tRNA-synt_1b PF00579.25 gi|134046843|ref|YP_001098328.1| - 1.3e-52 179.0 0.0 1.6e-52 178.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF1657 PF07870.11 gi|134046843|ref|YP_001098328.1| - 0.27 11.1 0.1 0.27 11.1 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1657) CbiG_C PF01890.16 gi|134046844|ref|YP_001098329.1| - 3e-23 82.6 0.0 4.8e-23 81.9 0.0 1.3 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus CbiG_N PF11760.8 gi|134046844|ref|YP_001098329.1| - 3.2e-18 65.5 0.0 6.2e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal QueC PF06508.13 gi|134046845|ref|YP_001098330.1| - 1.6e-05 24.6 0.1 1.6e-05 24.6 0.1 2.2 2 1 2 4 4 4 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|134046845|ref|YP_001098330.1| - 0.001 18.9 1.4 0.033 13.9 0.1 2.6 2 1 0 3 3 3 1 PP-loop family ThiI PF02568.14 gi|134046845|ref|YP_001098330.1| - 0.0023 17.5 0.7 0.0052 16.4 0.7 1.7 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.17 gi|134046845|ref|YP_001098330.1| - 0.013 14.6 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 gi|134046845|ref|YP_001098330.1| - 0.033 13.0 0.7 0.054 12.3 0.7 1.6 1 1 0 1 1 1 0 tRNA methyl transferase CPSase_sm_chain PF00988.22 gi|134046846|ref|YP_001098331.1| - 4.5e-45 152.6 0.1 8.9e-45 151.6 0.1 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|134046846|ref|YP_001098331.1| - 2.7e-43 148.0 0.0 3.7e-43 147.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|134046846|ref|YP_001098331.1| - 2e-08 34.2 0.6 0.00037 20.3 0.2 2.5 1 1 0 2 2 2 2 Peptidase C26 2-Hacid_dh_C PF02826.19 gi|134046847|ref|YP_001098332.1| - 3.3e-67 225.3 0.0 7.1e-67 224.2 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|134046847|ref|YP_001098332.1| - 4.9e-42 142.8 1.0 8.3e-42 142.0 0.4 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|134046847|ref|YP_001098332.1| - 6.5e-11 41.8 0.0 1.9e-10 40.3 0.0 1.9 1 0 0 1 1 1 1 ACT domain NAD_binding_2 PF03446.15 gi|134046847|ref|YP_001098332.1| - 9.2e-06 25.9 0.1 2.5e-05 24.5 0.1 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|134046847|ref|YP_001098332.1| - 0.0003 20.4 0.1 0.023 14.3 0.0 2.7 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|134046847|ref|YP_001098332.1| - 0.0051 17.4 1.0 0.031 14.9 0.0 2.8 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|134046847|ref|YP_001098332.1| - 0.017 15.2 2.3 0.049 13.7 0.2 2.4 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ACT_4 PF13291.6 gi|134046847|ref|YP_001098332.1| - 0.035 14.7 0.9 0.45 11.1 0.0 2.8 3 0 0 3 3 3 0 ACT domain Paramyxo_P_V_N PF13825.6 gi|134046847|ref|YP_001098332.1| - 0.039 13.4 0.3 0.21 11.0 0.1 2.0 2 0 0 2 2 2 0 Paramyxovirus structural protein V/P N-terminus UDPG_MGDP_dh_C PF03720.15 gi|134046847|ref|YP_001098332.1| - 0.092 13.2 0.8 1.1 9.7 0.0 2.6 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EamA PF00892.20 gi|134046848|ref|YP_001098333.1| - 1.7e-18 67.1 13.7 1.9e-18 66.9 13.7 1.0 1 0 0 1 1 1 1 EamA-like transporter family TPT PF03151.16 gi|134046848|ref|YP_001098333.1| - 0.0017 17.8 4.7 0.0019 17.6 4.7 1.1 1 0 0 1 1 1 1 Triose-phosphate Transporter family DUF4134 PF13572.6 gi|134046848|ref|YP_001098333.1| - 0.0023 18.2 0.4 0.0023 18.2 0.4 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4134) 7TMR-DISM_7TM PF07695.11 gi|134046848|ref|YP_001098333.1| - 0.1 12.5 10.7 0.12 12.3 10.7 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling Multi_Drug_Res PF00893.19 gi|134046848|ref|YP_001098333.1| - 0.1 13.3 12.3 0.24 12.1 8.6 2.5 1 1 1 2 2 2 0 Small Multidrug Resistance protein MerC PF03203.14 gi|134046848|ref|YP_001098333.1| - 0.12 12.9 8.9 0.099 13.1 3.4 2.1 1 1 1 2 2 2 0 MerC mercury resistance protein TMEM234 PF10639.9 gi|134046848|ref|YP_001098333.1| - 0.23 11.5 7.6 0.052 13.6 2.8 2.0 2 1 0 2 2 2 0 Putative transmembrane family 234 DUF4199 PF13858.6 gi|134046848|ref|YP_001098333.1| - 0.57 10.6 15.7 0.98 9.8 5.8 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) DUF417 PF04224.12 gi|134046848|ref|YP_001098333.1| - 1.7 8.1 8.4 0.51 9.9 5.5 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF417 DUF2070 PF09843.9 gi|134046848|ref|YP_001098333.1| - 2.5 6.3 8.9 3.2 5.9 8.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CD20 PF04103.15 gi|134046848|ref|YP_001098333.1| - 2.6 8.1 9.5 5.8 7.0 0.1 2.8 2 1 1 3 3 3 0 CD20-like family Abhydrolase_9_N PF15420.6 gi|134046848|ref|YP_001098333.1| - 6.4 6.7 7.2 13 5.7 5.9 2.3 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus Cytochrom_B562 PF07361.11 gi|134046849|ref|YP_001098334.1| - 0.012 16.3 0.2 0.014 16.0 0.2 1.0 1 0 0 1 1 1 0 Cytochrome b562 KAR9 PF08580.10 gi|134046849|ref|YP_001098334.1| - 0.33 9.4 2.3 0.4 9.2 2.3 1.0 1 0 0 1 1 1 0 Yeast cortical protein KAR9 Arginase PF00491.21 gi|134046850|ref|YP_001098335.1| - 1.3e-75 254.5 0.0 1.6e-75 254.2 0.0 1.0 1 0 0 1 1 1 1 Arginase family UPF0489 PF12640.7 gi|134046850|ref|YP_001098335.1| - 0.011 15.9 0.3 0.024 14.8 0.1 1.7 1 1 1 2 2 2 0 UPF0489 domain Spermine_synth PF01564.17 gi|134046851|ref|YP_001098336.1| - 3.8e-65 218.8 0.0 5e-65 218.4 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|134046851|ref|YP_001098336.1| - 2.2e-15 56.3 0.4 4.9e-15 55.2 0.4 1.6 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_PK PF05891.12 gi|134046851|ref|YP_001098336.1| - 0.0019 17.7 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Cons_hypoth95 PF03602.15 gi|134046851|ref|YP_001098336.1| - 0.022 14.4 0.0 0.032 13.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|134046851|ref|YP_001098336.1| - 0.046 14.5 0.1 0.21 12.4 0.0 2.1 3 0 0 3 3 3 0 Methyltransferase domain MTS PF05175.14 gi|134046851|ref|YP_001098336.1| - 0.055 13.0 0.0 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|134046851|ref|YP_001098336.1| - 0.082 13.6 0.0 0.2 12.4 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_30 PF05430.11 gi|134046851|ref|YP_001098336.1| - 0.089 12.7 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase PRMT5 PF05185.16 gi|134046851|ref|YP_001098336.1| - 0.11 12.3 0.2 0.24 11.2 0.2 1.5 1 1 0 1 1 1 0 PRMT5 arginine-N-methyltransferase AdoMet_dc PF02675.15 gi|134046852|ref|YP_001098337.1| - 1.7e-37 127.9 0.0 1.9e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase PvlArgDC PF01862.16 gi|134046853|ref|YP_001098338.1| - 7.1e-43 146.2 0.0 8e-43 146.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AAA_12 PF13087.6 gi|134046854|ref|YP_001098339.1| - 6e-53 179.4 6.1 1.2e-52 178.5 6.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|134046854|ref|YP_001098339.1| - 1.6e-52 178.9 0.1 1.6e-52 178.9 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|134046854|ref|YP_001098339.1| - 2.6e-07 30.5 0.0 6e-06 26.1 0.0 2.5 3 0 0 3 3 3 1 AAA domain Viral_helicase1 PF01443.18 gi|134046854|ref|YP_001098339.1| - 5e-06 26.4 0.1 0.094 12.4 0.0 3.0 2 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|134046854|ref|YP_001098339.1| - 8e-06 26.3 0.0 3.5e-05 24.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 gi|134046854|ref|YP_001098339.1| - 0.00028 20.6 0.0 0.00065 19.5 0.0 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain ResIII PF04851.15 gi|134046854|ref|YP_001098339.1| - 0.0018 18.3 0.2 0.0018 18.3 0.2 2.3 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|134046854|ref|YP_001098339.1| - 0.0028 18.0 0.0 0.012 15.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain UvrD-helicase PF00580.21 gi|134046854|ref|YP_001098339.1| - 0.0031 17.1 3.0 0.0075 15.8 3.1 1.7 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA PF00004.29 gi|134046854|ref|YP_001098339.1| - 0.005 17.3 1.2 0.037 14.4 0.0 3.0 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|134046854|ref|YP_001098339.1| - 0.0058 16.4 0.3 0.079 12.7 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|134046854|ref|YP_001098339.1| - 0.0066 16.8 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain DEAD PF00270.29 gi|134046854|ref|YP_001098339.1| - 0.0081 15.9 0.0 0.027 14.3 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase T2SSE PF00437.20 gi|134046854|ref|YP_001098339.1| - 0.0097 15.0 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein PhoH PF02562.16 gi|134046854|ref|YP_001098339.1| - 0.016 14.7 0.1 0.059 12.8 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein SPAN-X PF07458.12 gi|134046854|ref|YP_001098339.1| - 0.017 15.5 2.0 1 9.8 0.3 2.9 2 0 0 2 2 2 0 Sperm protein associated with nucleus, mapped to X chromosome S6PP PF05116.13 gi|134046854|ref|YP_001098339.1| - 0.072 12.6 0.3 0.13 11.8 0.3 1.4 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase UvrD_C PF13361.6 gi|134046854|ref|YP_001098339.1| - 1.2 8.4 11.2 2.1 7.7 3.5 3.0 3 0 0 3 3 3 0 UvrD-like helicase C-terminal domain Pterin_bind PF00809.22 gi|134046855|ref|YP_001098340.1| - 4e-10 39.8 0.1 6.7e-10 39.0 0.1 1.3 1 0 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.6 gi|134046855|ref|YP_001098340.1| - 1.1e-09 38.4 0.3 2.8e-07 30.6 0.1 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF4346) DUF561 PF04481.12 gi|134046855|ref|YP_001098340.1| - 0.00083 18.6 0.2 0.0023 17.1 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF561) QRPTase_C PF01729.19 gi|134046855|ref|YP_001098340.1| - 0.12 12.1 0.3 0.44 10.3 0.3 2.0 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Ribosomal_S13_N PF08069.12 gi|134046856|ref|YP_001098341.1| - 2.5e-25 88.3 0.5 5.5e-25 87.2 0.5 1.6 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|134046856|ref|YP_001098341.1| - 5.4e-16 58.6 0.0 7.5e-16 58.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Radical_SAM PF04055.21 gi|134046856|ref|YP_001098341.1| - 0.021 15.2 0.0 0.028 14.8 0.0 1.1 1 0 0 1 1 1 0 Radical SAM superfamily CTP_transf_like PF01467.26 gi|134046857|ref|YP_001098342.1| - 5.6e-15 55.8 0.0 1.9e-14 54.1 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|134046857|ref|YP_001098342.1| - 0.00094 18.5 0.0 0.12 11.6 0.0 2.1 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase ATP-sulfurylase PF01747.17 gi|134046857|ref|YP_001098342.1| - 0.14 11.6 0.0 8.6 5.8 0.0 2.1 2 0 0 2 2 2 0 ATP-sulfurylase Radical_SAM PF04055.21 gi|134046858|ref|YP_001098343.1| - 1e-21 78.0 0.1 2e-21 77.1 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|134046858|ref|YP_001098343.1| - 1.3e-21 76.4 0.0 2.6e-21 75.4 0.0 1.5 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|134046858|ref|YP_001098343.1| - 2.5e-05 24.5 0.0 0.00015 22.0 0.0 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|134046858|ref|YP_001098343.1| - 0.00011 22.1 0.1 0.00024 21.0 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Med16 PF11635.8 gi|134046858|ref|YP_001098343.1| - 0.13 10.1 0.0 0.22 9.4 0.0 1.3 1 0 0 1 1 1 0 Mediator complex subunit 16 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanococcus_maripaludis_C5_uid58741/NC_009135.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanococcus_maripaludis_C5_uid58741/NC_009135.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanococcus_maripaludis_C5_uid58741/NC_009135.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanococcus_maripaludis_C5_uid58741/NC_009135.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 15:54:31 2019 # [ok]