# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|282162671|ref|YP_003355056.1| - 6.3e-27 93.1 0.1 1.7e-26 91.7 0.1 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|282162671|ref|YP_003355056.1| - 1.8e-12 47.5 0.0 4.1e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|282162671|ref|YP_003355056.1| - 1.5e-10 41.4 0.0 3.3e-10 40.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|282162671|ref|YP_003355056.1| - 3.5e-09 36.8 0.4 2.5e-07 30.8 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|282162671|ref|YP_003355056.1| - 1.3e-07 31.5 0.3 4e-07 29.9 0.2 1.6 1 1 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|282162671|ref|YP_003355056.1| - 8e-06 25.6 0.0 3.2e-05 23.6 0.0 2.0 2 0 0 2 2 2 1 NACHT domain AAA_25 PF13481.1 gi|282162671|ref|YP_003355056.1| - 4.1e-05 23.0 0.0 9.9e-05 21.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain ResIII PF04851.10 gi|282162671|ref|YP_003355056.1| - 0.00027 20.8 0.0 0.0006 19.6 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit T2SE PF00437.15 gi|282162671|ref|YP_003355056.1| - 0.00038 19.4 0.0 0.00075 18.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.24 gi|282162671|ref|YP_003355056.1| - 0.00052 19.5 3.6 0.13 11.7 0.0 3.0 2 1 1 3 3 3 2 DEAD/DEAH box helicase AAA_14 PF13173.1 gi|282162671|ref|YP_003355056.1| - 0.00061 19.7 0.1 0.0014 18.4 0.1 1.7 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|282162671|ref|YP_003355056.1| - 0.0008 19.1 0.8 0.0049 16.5 0.5 2.0 1 1 0 1 1 1 1 Bacterial dnaA protein DUF815 PF05673.8 gi|282162671|ref|YP_003355056.1| - 0.0015 17.5 0.0 0.0087 15.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|282162671|ref|YP_003355056.1| - 0.0032 16.3 0.0 0.0052 15.6 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain DUF2075 PF09848.4 gi|282162671|ref|YP_003355056.1| - 0.004 16.1 0.0 0.0057 15.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Kinesin PF00225.18 gi|282162671|ref|YP_003355056.1| - 0.0049 15.6 0.0 0.008 14.9 0.0 1.4 1 0 0 1 1 1 1 Kinesin motor domain KAP_NTPase PF07693.9 gi|282162671|ref|YP_003355056.1| - 0.0054 15.7 2.7 0.44 9.4 0.0 2.3 1 1 1 2 2 2 2 KAP family P-loop domain AAA_24 PF13479.1 gi|282162671|ref|YP_003355056.1| - 0.0062 16.1 1.8 0.022 14.3 1.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|282162671|ref|YP_003355056.1| - 0.0065 16.7 0.3 0.0065 16.7 0.2 2.1 2 1 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|282162671|ref|YP_003355056.1| - 0.01 16.6 1.1 0.036 14.8 0.8 2.1 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|282162671|ref|YP_003355056.1| - 0.01 14.8 0.0 0.068 12.2 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|282162671|ref|YP_003355056.1| - 0.018 14.5 0.1 0.064 12.7 0.1 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_2 PF07724.9 gi|282162671|ref|YP_003355056.1| - 0.022 14.7 1.7 0.42 10.5 1.1 2.4 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) FtsK_SpoIIIE PF01580.13 gi|282162671|ref|YP_003355056.1| - 0.036 13.5 0.7 0.088 12.2 0.0 1.9 3 0 0 3 3 2 0 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|282162671|ref|YP_003355056.1| - 0.053 13.2 0.1 0.18 11.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Zot PF05707.7 gi|282162671|ref|YP_003355056.1| - 0.072 12.5 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) PIF1 PF05970.9 gi|282162671|ref|YP_003355056.1| - 0.074 11.9 0.0 0.12 11.2 0.0 1.4 1 1 0 1 1 1 0 PIF1-like helicase ABC_tran PF00005.22 gi|282162671|ref|YP_003355056.1| - 0.078 13.2 0.2 0.24 11.7 0.1 2.2 1 1 0 1 1 1 0 ABC transporter DUF1357 PF07094.6 gi|282162671|ref|YP_003355056.1| - 0.083 12.3 5.5 0.25 10.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1357) AAA_23 PF13476.1 gi|282162671|ref|YP_003355056.1| - 0.14 12.4 5.8 1.5 9.1 4.0 2.2 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|282162671|ref|YP_003355056.1| - 0.14 12.3 0.0 0.43 10.7 0.0 1.8 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.12 gi|282162671|ref|YP_003355056.1| - 2.3 8.0 5.5 2.2 8.0 0.4 2.6 2 1 1 3 3 3 0 Domain of unknown function DUF87 KGG PF10685.4 gi|282162672|ref|YP_003355057.1| - 2.9e-14 52.5 26.8 0.00095 19.0 0.0 6.1 4 2 2 6 6 6 5 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282162672|ref|YP_003355057.1| - 1.7e-07 31.4 24.3 7.8e-06 26.1 6.7 2.5 1 1 1 2 2 2 2 Small hydrophilic plant seed protein TUSC2 PF15000.1 gi|282162672|ref|YP_003355057.1| - 1.2 9.2 4.6 31 4.6 0.1 3.1 2 1 1 3 3 3 0 Tumour suppressor candidate 2 Peptidase_S24 PF00717.18 gi|282162673|ref|YP_003355058.1| - 0.0021 17.6 0.1 0.0039 16.7 0.1 1.5 1 1 0 1 1 1 1 Peptidase S24-like TMEM238 PF15125.1 gi|282162673|ref|YP_003355058.1| - 0.19 11.6 1.4 0.44 10.5 0.9 1.7 1 1 0 1 1 1 0 TMEM238 protein family AhpC-TSA PF00578.16 gi|282162674|ref|YP_003355059.1| - 1.4e-25 89.3 0.0 1.9e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|282162674|ref|YP_003355059.1| - 4.3e-13 49.0 0.0 5.4e-13 48.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|282162674|ref|YP_003355059.1| - 0.016 15.1 0.0 0.046 13.6 0.0 1.7 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF3068 PF11271.3 gi|282162674|ref|YP_003355059.1| - 0.13 11.2 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3068) Cupin_2 PF07883.6 gi|282162675|ref|YP_003355060.1| - 5.5e-11 41.8 0.0 7.9e-11 41.3 0.0 1.3 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|282162675|ref|YP_003355060.1| - 0.00062 19.4 0.0 0.00082 19.0 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DZR PF12773.2 gi|282162675|ref|YP_003355060.1| - 0.0017 18.1 0.3 0.0031 17.2 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|282162675|ref|YP_003355060.1| - 0.0044 16.9 0.2 0.0093 15.9 0.1 1.5 1 0 0 1 1 1 1 Zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|282162675|ref|YP_003355060.1| - 0.016 14.8 0.9 4.3 7.0 0.0 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DNA_ligase_ZBD PF03119.11 gi|282162675|ref|YP_003355060.1| - 0.019 14.6 1.5 1.1 9.0 0.0 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain AraC_binding PF02311.14 gi|282162675|ref|YP_003355060.1| - 0.031 13.9 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain TF_Zn_Ribbon PF08271.7 gi|282162675|ref|YP_003355060.1| - 0.057 12.7 1.8 0.17 11.2 1.3 1.8 1 1 1 2 2 2 0 TFIIB zinc-binding zf-piccolo PF05715.8 gi|282162675|ref|YP_003355060.1| - 0.063 13.2 0.3 0.12 12.4 0.2 1.4 1 0 0 1 1 1 0 Piccolo Zn-finger zf-ribbon_3 PF13248.1 gi|282162675|ref|YP_003355060.1| - 0.071 12.3 5.6 2.8 7.2 4.4 2.5 1 1 1 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|282162675|ref|YP_003355060.1| - 0.088 12.5 2.5 0.44 10.3 1.8 2.0 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cupin_3 PF05899.7 gi|282162675|ref|YP_003355060.1| - 0.095 12.0 0.0 0.21 10.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF861) PQQ_3 PF13570.1 gi|282162676|ref|YP_003355061.1| - 6.8e-62 204.1 36.2 1.3e-09 37.9 0.4 8.4 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|282162676|ref|YP_003355061.1| - 1.1e-56 191.9 17.9 2.7e-19 69.6 0.2 4.3 1 1 4 5 5 5 5 PQQ-like domain PQQ PF01011.16 gi|282162676|ref|YP_003355061.1| - 3.4e-47 155.7 22.7 1.6e-08 33.6 0.0 8.0 8 0 0 8 8 8 7 PQQ enzyme repeat TFIIIC_sub6 PF10419.4 gi|282162676|ref|YP_003355061.1| - 0.051 13.0 6.2 4.7 6.7 0.2 4.6 4 0 0 4 4 4 0 TFIIIC subunit Reg_prop PF07494.6 gi|282162676|ref|YP_003355061.1| - 0.65 10.2 10.4 29 5.1 0.0 6.2 8 0 0 8 8 8 0 Two component regulator propeller WD40 PF00400.27 gi|282162676|ref|YP_003355061.1| - 1.2 9.1 4.3 14 5.7 0.0 4.0 5 0 0 5 5 5 0 WD domain, G-beta repeat Glyco_hydro_15 PF00723.16 gi|282162677|ref|YP_003355062.1| - 6.4e-09 34.8 0.3 0.0055 15.3 0.0 3.4 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 SRP54 PF00448.17 gi|282162678|ref|YP_003355063.1| - 6.7e-74 247.5 0.5 8.9e-74 247.1 0.3 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|282162678|ref|YP_003355063.1| - 5.5e-13 48.8 2.0 6.9e-12 45.2 0.1 3.0 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|282162678|ref|YP_003355063.1| - 1.4e-06 27.5 0.2 2.5e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|282162678|ref|YP_003355063.1| - 2e-06 27.9 0.0 5e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|282162678|ref|YP_003355063.1| - 8.5e-06 24.9 0.4 1.3e-05 24.3 0.3 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) MobB PF03205.9 gi|282162678|ref|YP_003355063.1| - 4.8e-05 23.0 1.5 0.00011 21.9 1.0 1.8 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.15 gi|282162678|ref|YP_003355063.1| - 6.7e-05 22.5 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_19 PF13245.1 gi|282162678|ref|YP_003355063.1| - 7.5e-05 22.4 1.6 0.00019 21.0 0.7 2.0 1 1 1 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|282162678|ref|YP_003355063.1| - 0.00011 23.0 1.1 0.00032 21.5 0.1 2.3 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|282162678|ref|YP_003355063.1| - 0.00017 21.6 2.7 0.00066 19.7 0.1 2.5 1 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|282162678|ref|YP_003355063.1| - 0.00021 20.9 1.9 0.00062 19.4 1.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|282162678|ref|YP_003355063.1| - 0.00021 21.3 0.2 0.00051 20.0 0.2 1.7 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|282162678|ref|YP_003355063.1| - 0.00023 20.4 0.1 0.00049 19.4 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_33 PF13671.1 gi|282162678|ref|YP_003355063.1| - 0.00028 20.7 0.1 0.00074 19.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|282162678|ref|YP_003355063.1| - 0.00034 20.0 0.2 0.0067 15.8 0.1 2.3 2 0 0 2 2 2 1 Thymidylate kinase NTPase_1 PF03266.10 gi|282162678|ref|YP_003355063.1| - 0.00066 19.4 1.4 0.0018 18.0 1.0 1.8 1 1 0 1 1 1 1 NTPase AAA PF00004.24 gi|282162678|ref|YP_003355063.1| - 0.0012 19.0 1.0 0.005 17.0 0.7 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|282162678|ref|YP_003355063.1| - 0.0013 18.6 0.2 0.0022 17.8 0.0 1.4 2 0 0 2 2 1 1 Type III restriction enzyme, res subunit DUF853 PF05872.7 gi|282162678|ref|YP_003355063.1| - 0.0013 17.1 0.2 0.012 13.9 0.1 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) cobW PF02492.14 gi|282162678|ref|YP_003355063.1| - 0.0022 17.4 1.0 0.0049 16.3 0.4 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|282162678|ref|YP_003355063.1| - 0.0028 17.9 0.2 0.0084 16.4 0.0 2.0 2 0 0 2 2 1 1 AAA domain ABC_tran PF00005.22 gi|282162678|ref|YP_003355063.1| - 0.0033 17.7 0.1 0.011 16.0 0.0 1.8 2 0 0 2 2 2 1 ABC transporter SRPRB PF09439.5 gi|282162678|ref|YP_003355063.1| - 0.0035 16.5 0.3 0.31 10.2 0.0 2.2 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit ArgK PF03308.11 gi|282162678|ref|YP_003355063.1| - 0.012 14.4 0.1 0.023 13.5 0.0 1.6 1 0 0 1 1 1 0 ArgK protein Fe-ADH PF00465.14 gi|282162678|ref|YP_003355063.1| - 0.014 14.0 1.0 0.1 11.2 0.1 2.0 1 1 2 3 3 3 0 Iron-containing alcohol dehydrogenase Arch_ATPase PF01637.13 gi|282162678|ref|YP_003355063.1| - 0.015 14.9 0.5 0.026 14.2 0.0 1.6 2 0 0 2 2 1 0 Archaeal ATPase KaiC PF06745.8 gi|282162678|ref|YP_003355063.1| - 0.017 14.2 0.1 0.027 13.5 0.0 1.2 1 0 0 1 1 1 0 KaiC CbiA PF01656.18 gi|282162678|ref|YP_003355063.1| - 0.019 14.3 4.5 0.2 11.0 3.1 2.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain PPK2 PF03976.9 gi|282162678|ref|YP_003355063.1| - 0.019 14.2 0.0 0.035 13.3 0.0 1.4 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) MMR_HSR1 PF01926.18 gi|282162678|ref|YP_003355063.1| - 0.021 14.8 0.1 0.041 13.8 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase LpxK PF02606.9 gi|282162678|ref|YP_003355063.1| - 0.032 13.1 0.1 0.056 12.4 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_23 PF13476.1 gi|282162678|ref|YP_003355063.1| - 0.035 14.4 0.2 0.035 14.4 0.2 1.9 2 0 0 2 2 1 0 AAA domain AAA_14 PF13173.1 gi|282162678|ref|YP_003355063.1| - 0.039 13.8 0.1 0.13 12.1 0.0 1.8 1 1 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|282162678|ref|YP_003355063.1| - 0.055 13.0 0.0 0.098 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain KdpD PF02702.12 gi|282162678|ref|YP_003355063.1| - 0.068 12.2 0.3 0.12 11.5 0.2 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain T2SE PF00437.15 gi|282162678|ref|YP_003355063.1| - 0.07 12.0 1.3 0.18 10.6 0.9 1.8 1 1 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.7 gi|282162678|ref|YP_003355063.1| - 0.071 12.7 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 NACHT domain Helicase_RecD PF05127.9 gi|282162678|ref|YP_003355063.1| - 0.1 12.2 0.2 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 Helicase DUF87 PF01935.12 gi|282162678|ref|YP_003355063.1| - 0.42 10.4 3.0 0.67 9.7 0.4 2.2 2 1 0 2 2 2 0 Domain of unknown function DUF87 Prefoldin PF02996.12 gi|282162679|ref|YP_003355064.1| - 1.3e-23 82.8 1.4 1.5e-23 82.7 0.6 1.3 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|282162679|ref|YP_003355064.1| - 0.00019 21.1 3.5 0.0087 15.8 0.7 2.1 2 0 0 2 2 2 2 Prefoldin subunit Reo_sigmaC PF04582.7 gi|282162679|ref|YP_003355064.1| - 0.039 13.1 3.3 0.092 11.9 0.1 2.0 1 1 0 2 2 2 0 Reovirus sigma C capsid protein Zwint PF15556.1 gi|282162679|ref|YP_003355064.1| - 0.066 12.4 5.3 0.13 11.4 0.3 2.0 2 0 0 2 2 2 0 ZW10 interactor PspA_IM30 PF04012.7 gi|282162679|ref|YP_003355064.1| - 0.089 12.1 9.4 0.13 11.5 1.5 2.1 2 0 0 2 2 2 0 PspA/IM30 family IncA PF04156.9 gi|282162679|ref|YP_003355064.1| - 0.14 11.7 6.8 0.18 11.3 2.0 2.0 2 0 0 2 2 2 0 IncA protein Sec8_exocyst PF04048.9 gi|282162679|ref|YP_003355064.1| - 0.16 11.5 5.0 0.49 10.0 0.6 2.1 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain HisKA PF00512.20 gi|282162679|ref|YP_003355064.1| - 1.1 9.3 4.3 0.63 10.0 0.4 2.2 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain NPV_P10 PF05531.7 gi|282162679|ref|YP_003355064.1| - 1.4 9.2 5.8 0.72 10.1 1.0 2.1 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4140 PF13600.1 gi|282162679|ref|YP_003355064.1| - 1.7 9.0 6.9 4.3 7.8 1.2 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Tropomyosin_1 PF12718.2 gi|282162679|ref|YP_003355064.1| - 1.8 8.4 7.0 0.68 9.7 1.4 2.0 2 0 0 2 2 2 0 Tropomyosin like Ribosomal_L18ae PF01775.12 gi|282162680|ref|YP_003355065.1| - 2.2e-11 43.7 0.2 2.4e-11 43.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|282162681|ref|YP_003355066.1| - 3.1e-68 228.7 0.0 3.7e-68 228.5 0.0 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|282162682|ref|YP_003355067.1| - 6.8e-23 80.1 0.2 8.3e-23 79.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e CmcI PF04989.7 gi|282162682|ref|YP_003355067.1| - 0.024 13.9 0.0 0.027 13.7 0.0 1.1 1 0 0 1 1 1 0 Cephalosporin hydroxylase DUF3050 PF11251.3 gi|282162682|ref|YP_003355067.1| - 0.097 11.8 0.0 0.097 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3050) Ribosomal_L39 PF00832.15 gi|282162683|ref|YP_003355068.1| - 5.4e-21 73.7 8.8 6.4e-21 73.5 6.1 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Asn_synthase PF00733.16 gi|282162684|ref|YP_003355069.1| - 0.033 13.6 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase tRNA_Me_trans PF03054.11 gi|282162684|ref|YP_003355069.1| - 0.12 10.8 0.0 0.28 9.7 0.0 1.7 1 1 0 1 1 1 0 tRNA methyl transferase dsDNA_bind PF01984.15 gi|282162685|ref|YP_003355070.1| - 1.1e-31 109.0 15.8 1.2e-31 108.8 11.0 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain EspB PF05802.6 gi|282162685|ref|YP_003355070.1| - 0.056 12.3 1.3 0.077 11.9 0.9 1.2 1 0 0 1 1 1 0 Enterobacterial EspB protein SDA1 PF05285.7 gi|282162685|ref|YP_003355070.1| - 0.34 10.1 5.5 0.37 10.0 3.8 1.0 1 0 0 1 1 1 0 SDA1 Ribosomal_S19e PF01090.14 gi|282162686|ref|YP_003355071.1| - 2.6e-57 192.1 0.1 3e-57 191.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e TrmB PF01978.14 gi|282162686|ref|YP_003355071.1| - 0.055 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|282162686|ref|YP_003355071.1| - 0.056 13.2 0.0 0.085 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix GntR PF00392.16 gi|282162686|ref|YP_003355071.1| - 0.07 12.5 0.1 0.21 11.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|282162686|ref|YP_003355071.1| - 0.081 13.0 0.1 0.34 11.0 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator DUF4619 PF15398.1 gi|282162686|ref|YP_003355071.1| - 0.11 11.8 0.0 0.45 9.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4619) RimK PF08443.6 gi|282162687|ref|YP_003355072.1| - 7e-09 35.4 0.0 1.4e-08 34.4 0.0 1.5 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|282162687|ref|YP_003355072.1| - 9.3e-08 32.0 0.0 2.3e-07 30.7 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|282162687|ref|YP_003355072.1| - 0.00041 19.8 0.0 0.0007 19.0 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus DUF4343 PF14243.1 gi|282162687|ref|YP_003355072.1| - 0.019 14.7 0.0 0.05 13.4 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4343) RLAN PF14401.1 gi|282162688|ref|YP_003355073.1| - 4.4e-34 117.1 0.0 5.1e-34 116.9 0.0 1.0 1 0 0 1 1 1 1 RimK-like ATPgrasp N-terminal domain UPF0147 PF03685.8 gi|282162689|ref|YP_003355074.1| - 3.7e-37 126.0 3.3 4.1e-37 125.9 2.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|282162689|ref|YP_003355074.1| - 0.0069 16.4 0.2 2.7 8.1 0.1 2.2 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0253) DUF1119 PF06550.6 gi|282162690|ref|YP_003355075.1| - 9.2e-84 280.9 25.8 1e-83 280.7 17.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) DUF3810 PF12725.2 gi|282162690|ref|YP_003355075.1| - 1.1 8.1 6.8 7.2 5.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) DUF2102 PF09875.4 gi|282162691|ref|YP_003355076.1| - 5.1e-10 38.8 0.0 5.6e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Elf1 PF05129.8 gi|282162692|ref|YP_003355077.1| - 0.0014 18.2 5.2 0.044 13.4 0.3 2.2 2 0 0 2 2 2 2 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.2 gi|282162692|ref|YP_003355077.1| - 0.025 14.3 9.8 3.6 7.4 0.5 3.8 3 1 1 4 4 4 0 Transposase zinc-ribbon domain Cas_CXXC_CXXC PF09706.5 gi|282162692|ref|YP_003355077.1| - 0.028 14.5 9.5 0.41 10.8 0.1 2.8 1 1 2 3 3 3 0 CRISPR-associated protein (Cas_CXXC_CXXC) TipAS PF07739.8 gi|282162692|ref|YP_003355077.1| - 0.12 12.6 0.0 0.18 12.1 0.0 1.2 1 0 0 1 1 1 0 TipAS antibiotic-recognition domain OrfB_Zn_ribbon PF07282.6 gi|282162692|ref|YP_003355077.1| - 0.14 11.8 3.3 2.2 7.9 0.3 2.3 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|282162692|ref|YP_003355077.1| - 0.16 11.9 4.3 1.2 9.1 0.6 2.2 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.5 gi|282162692|ref|YP_003355077.1| - 0.25 11.3 10.1 1.2 9.1 0.5 3.5 2 2 2 4 4 4 0 Zinc ribbon domain NMD3 PF04981.8 gi|282162692|ref|YP_003355077.1| - 0.26 10.3 11.0 0.57 9.2 0.9 2.0 1 1 1 2 2 2 0 NMD3 family DUF35_N PF12172.3 gi|282162692|ref|YP_003355077.1| - 0.38 10.7 7.1 4.9 7.2 0.6 3.3 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-CCHC PF00098.18 gi|282162692|ref|YP_003355077.1| - 0.61 10.1 0.2 0.61 10.1 0.2 3.7 4 0 0 4 4 4 0 Zinc knuckle Ogr_Delta PF04606.7 gi|282162692|ref|YP_003355077.1| - 0.84 9.3 6.2 3.5 7.3 1.3 2.9 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger DZR PF12773.2 gi|282162692|ref|YP_003355077.1| - 0.86 9.4 12.9 0.44 10.4 0.9 2.9 2 2 0 2 2 2 0 Double zinc ribbon eIF-5_eIF-2B PF01873.12 gi|282162692|ref|YP_003355077.1| - 0.93 9.1 11.3 1.6 8.4 1.1 2.4 1 1 1 2 2 2 0 Domain found in IF2B/IF5 PhnA_Zn_Ribbon PF08274.7 gi|282162692|ref|YP_003355077.1| - 2.1 8.2 14.7 12 5.8 0.1 3.5 3 1 0 3 3 3 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|282162692|ref|YP_003355077.1| - 2.2 7.5 11.7 1.8 7.8 0.1 3.2 4 0 0 4 4 4 0 zinc-ribbon domain Cys_rich_KTR PF14205.1 gi|282162692|ref|YP_003355077.1| - 2.4 7.6 7.2 0.17 11.3 0.5 2.2 2 1 0 2 2 2 0 Cysteine-rich KTR DRP PF06044.7 gi|282162692|ref|YP_003355077.1| - 2.5 7.0 5.5 5.5 5.9 1.0 2.0 1 1 1 2 2 2 0 Dam-replacing family PHF5 PF03660.9 gi|282162692|ref|YP_003355077.1| - 3.7 7.6 7.1 1.3 9.1 1.0 2.1 1 1 1 2 2 2 0 PHF5-like protein CpXC PF14353.1 gi|282162692|ref|YP_003355077.1| - 3.7 7.5 7.6 1.6 8.6 0.2 2.7 2 1 1 3 3 3 0 CpXC protein zf-CHY PF05495.7 gi|282162692|ref|YP_003355077.1| - 6.9 6.9 8.8 9.5 6.4 1.3 2.4 2 0 0 2 2 2 0 CHY zinc finger TF_Zn_Ribbon PF08271.7 gi|282162692|ref|YP_003355077.1| - 7.8 5.9 9.7 1.8 7.9 0.8 2.6 3 0 0 3 3 3 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|282162692|ref|YP_003355077.1| - 8.3 6.7 9.8 2.2 8.6 0.6 2.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|282162692|ref|YP_003355077.1| - 8.4 6.1 9.8 22 4.8 0.9 3.4 3 1 0 3 3 3 0 zinc-ribbon domain Metallophos_2 PF12850.2 gi|282162693|ref|YP_003355078.1| - 1.5e-22 80.1 0.0 2.2e-22 79.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|282162693|ref|YP_003355078.1| - 1.3e-17 63.8 0.0 1.6e-17 63.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|282162693|ref|YP_003355078.1| - 2.9e-14 52.8 0.0 5.5e-10 38.8 0.0 2.2 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily VWA_CoxE PF05762.9 gi|282162693|ref|YP_003355078.1| - 0.049 12.7 0.0 0.08 12.0 0.0 1.3 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein KaiC PF06745.8 gi|282162694|ref|YP_003355079.1| - 3.5e-44 150.5 0.0 4.1e-44 150.3 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|282162694|ref|YP_003355079.1| - 1.2e-08 34.5 0.0 1.7e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|282162694|ref|YP_003355079.1| - 0.013 13.8 0.0 0.016 13.5 0.0 1.4 1 1 0 1 1 1 0 GvpD gas vesicle protein AAA_10 PF12846.2 gi|282162694|ref|YP_003355079.1| - 0.016 14.6 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|282162694|ref|YP_003355079.1| - 0.022 14.4 0.1 0.049 13.3 0.0 1.6 1 1 0 1 1 1 0 Part of AAA domain RecA PF00154.16 gi|282162694|ref|YP_003355079.1| - 0.028 13.4 0.3 0.049 12.6 0.2 1.4 1 1 0 1 1 1 0 recA bacterial DNA recombination protein AAA_22 PF13401.1 gi|282162694|ref|YP_003355079.1| - 0.039 14.1 0.0 0.093 12.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|282162694|ref|YP_003355079.1| - 0.047 13.6 0.1 0.069 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.4 gi|282162694|ref|YP_003355079.1| - 0.049 12.6 0.4 0.066 12.1 0.0 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) FtsK_SpoIIIE PF01580.13 gi|282162694|ref|YP_003355079.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_33 PF13671.1 gi|282162694|ref|YP_003355079.1| - 0.18 11.7 0.2 0.22 11.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain APH PF01636.18 gi|282162695|ref|YP_003355080.1| - 2.9e-08 33.7 0.0 4.1e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family HAD_2 PF13419.1 gi|282162696|ref|YP_003355081.1| - 1.4e-25 90.5 0.2 4.7e-25 88.8 0.1 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|282162696|ref|YP_003355081.1| - 2.2e-09 36.8 0.1 3.9e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|282162696|ref|YP_003355081.1| - 1.8e-06 28.5 0.0 1.1e-05 25.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.16 gi|282162697|ref|YP_003355082.1| - 5.2e-21 75.5 0.0 3.1e-17 63.2 0.0 2.1 2 0 0 2 2 2 2 Radical SAM superfamily B12-binding PF02310.14 gi|282162697|ref|YP_003355082.1| - 6.1e-18 64.8 0.0 4.3e-17 62.0 0.0 2.1 2 0 0 2 2 2 1 B12 binding domain Glyco_trans_4_4 PF13579.1 gi|282162697|ref|YP_003355082.1| - 0.0027 17.8 0.1 0.14 12.2 0.0 3.1 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyoxalase PF00903.20 gi|282162698|ref|YP_003355083.1| - 1.4e-11 44.4 0.0 3e-11 43.3 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|282162698|ref|YP_003355083.1| - 2.1e-11 44.3 0.0 2.5e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|282162698|ref|YP_003355083.1| - 1.1e-08 35.1 0.0 1.4e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|282162698|ref|YP_003355083.1| - 0.00037 20.4 0.0 0.0099 15.7 0.0 2.2 1 1 0 1 1 1 1 Glyoxalase-like domain tRNA-synt_1f PF01921.13 gi|282162699|ref|YP_003355084.1| - 1.5e-89 300.1 0.0 2.7e-89 299.3 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|282162699|ref|YP_003355084.1| - 0.0032 16.1 0.1 0.0086 14.7 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (M) Hexapep PF00132.19 gi|282162700|ref|YP_003355085.1| - 3e-17 61.2 8.3 2.3e-09 36.3 0.9 4.0 3 1 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|282162700|ref|YP_003355085.1| - 0.00037 20.0 11.2 0.0028 17.1 1.9 3.2 1 1 2 3 3 3 2 Hexapeptide repeat of succinyl-transferase CTP_transf_2 PF01467.21 gi|282162701|ref|YP_003355086.1| - 1.8e-13 50.8 0.0 3.4e-13 49.9 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|282162701|ref|YP_003355086.1| - 0.079 12.5 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 FAD synthetase NTPase_I-T PF01931.13 gi|282162702|ref|YP_003355087.1| - 6.3e-55 185.4 0.0 7.1e-55 185.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Pur_DNA_glyco PF02245.11 gi|282162703|ref|YP_003355088.1| - 2.5e-74 248.4 0.0 2.8e-74 248.2 0.0 1.0 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) PAS_9 PF13426.1 gi|282162704|ref|YP_003355089.1| - 1.6e-35 121.6 1.4 6.4e-17 61.8 0.0 3.9 4 1 0 4 4 3 2 PAS domain PAS PF00989.19 gi|282162704|ref|YP_003355089.1| - 7.8e-31 106.1 0.2 2.2e-13 49.9 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|282162704|ref|YP_003355089.1| - 1.5e-25 89.3 0.0 2.3e-11 43.7 0.0 4.1 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.1 gi|282162704|ref|YP_003355089.1| - 4.9e-21 73.7 0.3 6.5e-06 25.8 0.0 4.6 4 1 0 4 4 4 3 PAS domain HATPase_c PF02518.21 gi|282162704|ref|YP_003355089.1| - 3.5e-19 68.5 0.0 8e-19 67.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|282162704|ref|YP_003355089.1| - 9.8e-19 67.2 0.0 8.8e-14 51.3 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_7 PF12860.2 gi|282162704|ref|YP_003355089.1| - 8.8e-05 22.4 0.4 0.12 12.3 0.0 3.5 2 1 0 2 2 2 2 PAS fold PAS_11 PF14598.1 gi|282162704|ref|YP_003355089.1| - 0.00034 20.5 0.0 0.0043 16.9 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|282162704|ref|YP_003355089.1| - 0.0022 17.7 0.0 0.0065 16.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282162704|ref|YP_003355089.1| - 0.015 14.9 0.0 0.043 13.5 0.0 1.7 1 0 0 1 1 1 0 GHKL domain HisKA PF00512.20 gi|282162704|ref|YP_003355089.1| - 0.016 15.1 3.7 0.02 14.8 0.2 2.8 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain KGG PF10685.4 gi|282162705|ref|YP_003355090.1| - 2.1e-12 46.6 7.5 0.00011 22.0 0.0 3.5 2 1 1 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282162705|ref|YP_003355090.1| - 9.6e-07 29.0 10.3 1.1e-06 28.8 7.1 1.2 1 0 0 1 1 1 1 Small hydrophilic plant seed protein Phasin PF05597.6 gi|282162705|ref|YP_003355090.1| - 0.17 11.6 0.6 0.17 11.6 0.4 1.6 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Porin_1 PF00267.16 gi|282162705|ref|YP_003355090.1| - 0.34 10.1 6.2 0.64 9.2 1.8 2.0 1 1 1 2 2 2 0 Gram-negative porin SASP PF00269.15 gi|282162705|ref|YP_003355090.1| - 0.77 9.6 10.8 2.8 7.8 0.6 2.4 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type CarboxypepD_reg PF13620.1 gi|282162707|ref|YP_003355092.1| - 4.1e-05 23.5 1.0 0.0001 22.2 0.7 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4366 PF14283.1 gi|282162707|ref|YP_003355092.1| - 0.00022 20.7 0.0 0.0072 15.7 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4366) DUF4480 PF13715.1 gi|282162707|ref|YP_003355092.1| - 0.018 15.0 0.1 0.03 14.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|282162707|ref|YP_003355092.1| - 0.028 14.1 0.0 0.055 13.2 0.0 1.5 1 0 0 1 1 1 0 Cna protein B-type domain MGC-24 PF05283.6 gi|282162707|ref|YP_003355092.1| - 0.052 13.3 4.6 0.09 12.5 3.2 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) DUF4131 PF13567.1 gi|282162707|ref|YP_003355092.1| - 0.062 12.7 1.4 1.9 7.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) GSK-3_bind PF05350.7 gi|282162707|ref|YP_003355092.1| - 0.28 10.5 2.0 0.44 9.9 1.4 1.2 1 0 0 1 1 1 0 Glycogen synthase kinase-3 binding PT PF04886.7 gi|282162707|ref|YP_003355092.1| - 2.5 7.5 15.4 8.8 5.7 10.7 1.9 1 1 0 1 1 1 0 PT repeat Thioredoxin PF00085.15 gi|282162709|ref|YP_003355094.1| - 3.1e-28 97.4 0.0 3.5e-28 97.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|282162709|ref|YP_003355094.1| - 1.5e-08 34.8 0.1 1.6e-07 31.5 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|282162709|ref|YP_003355094.1| - 3.6e-07 30.2 0.0 2.4e-05 24.3 0.0 2.1 1 1 1 2 2 2 1 Thioredoxin-like Redoxin PF08534.5 gi|282162709|ref|YP_003355094.1| - 1.7e-05 24.4 0.0 2.9e-05 23.6 0.0 1.3 1 1 0 1 1 1 1 Redoxin Thioredoxin_9 PF14595.1 gi|282162709|ref|YP_003355094.1| - 3.9e-05 23.2 0.0 4.2e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|282162709|ref|YP_003355094.1| - 0.00051 19.8 0.0 0.0033 17.2 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin domain Thioredoxin_7 PF13899.1 gi|282162709|ref|YP_003355094.1| - 0.0042 17.0 0.0 0.0061 16.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|282162709|ref|YP_003355094.1| - 0.029 14.0 0.0 0.053 13.1 0.0 1.5 1 1 0 1 1 1 0 AhpC/TSA family Thioredoxin_6 PF13848.1 gi|282162709|ref|YP_003355094.1| - 0.097 12.4 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain TrbC_Ftype PF09673.5 gi|282162709|ref|YP_003355094.1| - 0.11 12.0 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein TP6A_N PF04406.9 gi|282162710|ref|YP_003355095.1| - 9.5e-24 82.8 0.3 1.6e-23 82.1 0.2 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.6 gi|282162711|ref|YP_003355096.1| - 5.8e-44 149.4 0.0 9.9e-44 148.6 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|282162711|ref|YP_003355096.1| - 2.8e-11 43.1 0.2 6e-10 38.8 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|282162711|ref|YP_003355096.1| - 4.9e-09 35.9 0.0 9.1e-09 35.0 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RRF PF01765.14 gi|282162711|ref|YP_003355096.1| - 0.02 14.3 0.1 0.047 13.1 0.0 1.5 1 0 0 1 1 1 0 Ribosome recycling factor Gam PF06064.6 gi|282162711|ref|YP_003355096.1| - 0.025 14.6 0.2 0.059 13.4 0.1 1.6 1 0 0 1 1 1 0 Host-nuclease inhibitor protein Gam LUC7 PF03194.10 gi|282162711|ref|YP_003355096.1| - 0.029 13.8 0.9 0.043 13.3 0.1 1.6 2 0 0 2 2 2 0 LUC7 N_terminus Glycos_transf_1 PF00534.15 gi|282162712|ref|YP_003355097.1| - 2.6e-35 121.3 0.0 4.7e-35 120.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282162712|ref|YP_003355097.1| - 3.1e-19 69.4 0.1 2e-18 66.8 0.0 2.3 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282162712|ref|YP_003355097.1| - 7.2e-17 61.9 2.1 1.2e-16 61.2 1.5 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|282162712|ref|YP_003355097.1| - 1.1e-15 57.8 0.2 1.6e-15 57.3 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|282162712|ref|YP_003355097.1| - 5.8e-08 32.9 0.0 1.2e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|282162712|ref|YP_003355097.1| - 4e-05 23.4 0.0 6.6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Auto_anti-p27 PF06677.7 gi|282162713|ref|YP_003355098.1| - 1.8e-13 50.0 2.9 2.6e-13 49.4 2.0 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Fer4 PF00037.22 gi|282162714|ref|YP_003355099.1| - 4.5e-10 38.7 14.7 7.1e-05 22.2 3.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|282162714|ref|YP_003355099.1| - 6.7e-09 35.2 13.6 0.00011 21.9 1.3 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282162714|ref|YP_003355099.1| - 2e-08 34.4 23.7 5.7e-06 26.6 9.1 3.4 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282162714|ref|YP_003355099.1| - 1.4e-06 28.0 9.1 1.4e-06 28.0 6.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282162714|ref|YP_003355099.1| - 1.7e-06 27.7 23.7 3.1e-05 23.6 9.5 2.9 2 2 1 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282162714|ref|YP_003355099.1| - 9.2e-06 25.8 12.6 9.2e-06 25.8 8.8 2.9 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282162714|ref|YP_003355099.1| - 9.5e-05 23.0 1.0 9.5e-05 23.0 0.7 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|282162714|ref|YP_003355099.1| - 0.00031 20.7 22.6 0.00092 19.1 8.8 2.9 1 1 2 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282162714|ref|YP_003355099.1| - 0.00083 19.6 4.8 0.016 15.5 0.2 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282162714|ref|YP_003355099.1| - 0.0014 18.4 15.6 0.0091 15.8 2.0 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|282162714|ref|YP_003355099.1| - 0.0034 17.5 16.5 0.015 15.6 3.3 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|282162714|ref|YP_003355099.1| - 0.036 14.6 5.8 0.036 14.6 4.0 3.6 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|282162714|ref|YP_003355099.1| - 0.047 14.1 5.7 0.047 14.1 4.0 3.0 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282162714|ref|YP_003355099.1| - 2.4 8.6 12.1 2.9 8.3 1.6 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain NOG1 PF06858.9 gi|282162715|ref|YP_003355100.1| - 7.4e-21 73.7 0.0 1.3e-20 73.0 0.0 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|282162715|ref|YP_003355100.1| - 7.1e-19 67.8 0.0 1.5e-18 66.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|282162715|ref|YP_003355100.1| - 3.8e-12 45.7 0.1 7.7e-12 44.7 0.0 1.5 2 0 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|282162715|ref|YP_003355100.1| - 2.2e-06 28.1 0.0 4.3e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein AIG1 PF04548.11 gi|282162715|ref|YP_003355100.1| - 0.0042 16.2 0.0 0.006 15.7 0.0 1.2 1 0 0 1 1 1 1 AIG1 family DUF258 PF03193.11 gi|282162715|ref|YP_003355100.1| - 0.016 14.3 0.0 0.051 12.7 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|282162715|ref|YP_003355100.1| - 0.017 14.9 0.1 6.7 6.5 0.0 2.7 2 1 1 3 3 3 0 Dynamin family GTP_EFTU PF00009.22 gi|282162715|ref|YP_003355100.1| - 0.13 11.6 0.0 2.1 7.7 0.0 2.6 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain DUF4415 PF14384.1 gi|282162717|ref|YP_003355102.1| - 0.0096 16.0 0.0 0.03 14.4 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4415) GP41 PF00517.12 gi|282162717|ref|YP_003355102.1| - 0.15 11.5 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 Retroviral envelope protein Peptidase_S24 PF00717.18 gi|282162718|ref|YP_003355103.1| - 0.0026 17.3 0.4 0.0071 15.9 0.3 1.8 1 1 0 1 1 1 1 Peptidase S24-like FMN_red PF03358.10 gi|282162719|ref|YP_003355104.1| - 4.4e-23 81.4 0.0 5.9e-23 81.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|282162719|ref|YP_003355104.1| - 5.7e-06 25.9 0.0 8.1e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold SUKH-3 PF14433.1 gi|282162719|ref|YP_003355104.1| - 0.032 14.0 0.1 0.056 13.2 0.1 1.4 1 0 0 1 1 1 0 SUKH-3 immunity protein zf-C2HC_2 PF13913.1 gi|282162719|ref|YP_003355104.1| - 1.9 8.2 5.8 3.6 7.3 4.0 1.5 1 0 0 1 1 1 0 zinc-finger of a C2HC-type Fer4_6 PF12837.2 gi|282162719|ref|YP_003355104.1| - 9.8 6.2 6.6 1.2 9.1 1.3 1.9 2 0 0 2 2 2 0 4Fe-4S binding domain MRG PF05712.8 gi|282162720|ref|YP_003355105.1| - 0.12 11.2 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 MRG PAS PF00989.19 gi|282162722|ref|YP_003355107.1| - 5.5e-45 151.7 0.0 1.6e-11 43.9 0.0 4.3 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.1 gi|282162722|ref|YP_003355107.1| - 2e-42 143.7 0.0 1.4e-14 54.2 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|282162722|ref|YP_003355107.1| - 3.8e-33 113.4 0.0 2.7e-11 43.4 0.0 4.8 5 0 0 5 5 5 4 PAS fold PAS_4 PF08448.5 gi|282162722|ref|YP_003355107.1| - 4.5e-28 97.4 0.0 1e-09 38.3 0.0 4.3 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|282162722|ref|YP_003355107.1| - 6.1e-22 76.6 0.0 4.2e-06 26.4 0.0 4.6 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|282162722|ref|YP_003355107.1| - 5.1e-14 51.9 0.0 1.2e-13 50.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|282162722|ref|YP_003355107.1| - 1.7e-08 34.3 0.0 0.0013 18.7 0.0 3.6 2 1 1 3 3 3 2 PAS domain PAS_7 PF12860.2 gi|282162722|ref|YP_003355107.1| - 0.0002 21.3 0.6 0.66 10.0 0.0 3.9 3 1 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|282162722|ref|YP_003355107.1| - 0.00038 20.2 0.0 0.0016 18.2 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|282162723|ref|YP_003355108.1| - 0.033 14.1 0.2 0.067 13.1 0.2 1.6 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|282162724|ref|YP_003355109.1| - 8.4e-26 89.8 0.3 1.5e-14 53.7 0.0 3.2 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.1 gi|282162724|ref|YP_003355109.1| - 6.1e-24 84.3 0.0 2.9e-12 46.8 0.0 3.5 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|282162724|ref|YP_003355109.1| - 4.8e-21 74.5 0.0 1.1e-20 73.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|282162724|ref|YP_003355109.1| - 1.5e-16 60.1 0.0 1e-08 34.9 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|282162724|ref|YP_003355109.1| - 5e-14 52.2 0.0 0.0025 17.8 0.0 4.1 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|282162724|ref|YP_003355109.1| - 1.4e-11 43.7 0.0 0.00031 20.4 0.0 3.5 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|282162724|ref|YP_003355109.1| - 4e-05 23.4 0.0 8.2e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282162724|ref|YP_003355109.1| - 0.021 14.5 0.0 0.057 13.1 0.0 1.7 1 0 0 1 1 1 0 GHKL domain PAS_7 PF12860.2 gi|282162724|ref|YP_003355109.1| - 0.17 11.9 1.4 95 3.0 0.0 4.6 5 1 0 5 5 5 0 PAS fold Anti-adapt_IraP PF10796.4 gi|282162725|ref|YP_003355110.1| - 0.034 14.5 0.7 0.59 10.5 0.1 2.2 1 1 1 2 2 2 0 Sigma-S stabilisation anti-adaptor protein polyprenyl_synt PF00348.12 gi|282162726|ref|YP_003355111.1| - 1.3e-42 145.4 2.1 1.7e-42 145.0 1.5 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase AAA PF00004.24 gi|282162727|ref|YP_003355112.1| - 4.7e-96 318.0 0.0 3.8e-47 159.7 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|282162727|ref|YP_003355112.1| - 1.6e-26 92.0 0.2 6.9e-26 90.0 0.3 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|282162727|ref|YP_003355112.1| - 2e-14 53.8 0.0 1.5e-07 31.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|282162727|ref|YP_003355112.1| - 5.8e-14 52.4 0.0 1.6e-05 24.9 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|282162727|ref|YP_003355112.1| - 6.5e-14 51.3 0.0 1.5e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|282162727|ref|YP_003355112.1| - 9e-14 51.0 0.1 7.4e-06 25.1 0.0 2.9 2 2 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|282162727|ref|YP_003355112.1| - 2.9e-13 50.0 0.6 0.00031 20.8 0.0 4.3 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|282162727|ref|YP_003355112.1| - 1.5e-11 44.3 0.0 4.8e-05 23.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|282162727|ref|YP_003355112.1| - 3.2e-11 43.1 1.1 0.00035 20.3 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|282162727|ref|YP_003355112.1| - 5.6e-11 43.3 0.1 0.00012 22.9 0.0 2.8 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|282162727|ref|YP_003355112.1| - 1.3e-10 40.5 0.2 0.0005 18.8 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_14 PF13173.1 gi|282162727|ref|YP_003355112.1| - 2.2e-10 40.5 0.0 0.0004 20.2 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_19 PF13245.1 gi|282162727|ref|YP_003355112.1| - 7.6e-10 38.4 0.9 0.0011 18.6 0.1 2.7 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|282162727|ref|YP_003355112.1| - 8.4e-10 38.0 0.0 0.00095 18.3 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|282162727|ref|YP_003355112.1| - 9e-10 38.2 0.1 0.0011 18.3 0.0 3.1 3 0 0 3 3 3 2 IstB-like ATP binding protein NACHT PF05729.7 gi|282162727|ref|YP_003355112.1| - 2.2e-09 37.1 0.1 0.22 11.1 0.0 4.2 3 1 1 4 4 4 2 NACHT domain ABC_tran PF00005.22 gi|282162727|ref|YP_003355112.1| - 8.8e-09 35.7 0.0 0.0012 19.1 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_28 PF13521.1 gi|282162727|ref|YP_003355112.1| - 3.7e-08 33.5 0.0 0.0063 16.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|282162727|ref|YP_003355112.1| - 6.4e-08 32.9 0.0 0.015 15.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|282162727|ref|YP_003355112.1| - 2.5e-07 30.3 0.1 0.035 13.5 0.0 3.1 2 2 0 2 2 2 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|282162727|ref|YP_003355112.1| - 2.8e-07 30.4 0.2 0.014 15.1 0.0 3.5 2 2 1 3 3 3 2 Archaeal ATPase RNA_helicase PF00910.17 gi|282162727|ref|YP_003355112.1| - 4.7e-07 29.9 0.0 0.03 14.4 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|282162727|ref|YP_003355112.1| - 9e-07 28.2 0.3 0.022 13.9 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|282162727|ref|YP_003355112.1| - 1.3e-06 28.1 0.0 0.029 13.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|282162727|ref|YP_003355112.1| - 1.8e-06 27.4 8.0 0.042 13.2 0.4 4.2 2 2 1 3 3 3 2 AAA domain Sigma54_activ_2 PF14532.1 gi|282162727|ref|YP_003355112.1| - 2.1e-06 27.8 0.0 0.029 14.4 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain KaiC PF06745.8 gi|282162727|ref|YP_003355112.1| - 4.2e-06 26.0 0.6 0.22 10.6 0.0 3.4 2 1 1 3 3 3 2 KaiC Parvo_NS1 PF01057.12 gi|282162727|ref|YP_003355112.1| - 1.4e-05 24.1 0.0 0.032 13.1 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|282162727|ref|YP_003355112.1| - 1.4e-05 24.3 0.1 0.18 10.9 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein DUF2075 PF09848.4 gi|282162727|ref|YP_003355112.1| - 2.2e-05 23.5 0.0 0.083 11.8 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_3 PF07726.6 gi|282162727|ref|YP_003355112.1| - 4.5e-05 23.0 0.0 0.56 9.8 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|282162727|ref|YP_003355112.1| - 6.5e-05 21.9 0.0 0.13 11.0 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain KAP_NTPase PF07693.9 gi|282162727|ref|YP_003355112.1| - 8.2e-05 21.7 0.1 0.027 13.4 0.0 2.9 2 1 1 3 3 3 1 KAP family P-loop domain AAA_11 PF13086.1 gi|282162727|ref|YP_003355112.1| - 0.00015 21.3 0.0 0.34 10.4 0.0 2.5 2 1 0 2 2 2 2 AAA domain DUF815 PF05673.8 gi|282162727|ref|YP_003355112.1| - 0.00035 19.5 0.0 0.34 9.7 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Bac_DnaA PF00308.13 gi|282162727|ref|YP_003355112.1| - 0.00057 19.5 0.0 0.32 10.6 0.0 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein ATP-synt_ab PF00006.20 gi|282162727|ref|YP_003355112.1| - 0.0012 18.4 0.0 1 8.7 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|282162727|ref|YP_003355112.1| - 0.0017 18.0 0.0 2.1 7.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|282162727|ref|YP_003355112.1| - 0.0017 18.1 0.0 0.27 11.0 0.0 2.5 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Guanylate_kin PF00625.16 gi|282162727|ref|YP_003355112.1| - 0.0026 17.2 0.3 17 4.7 0.0 4.2 2 2 2 4 4 4 0 Guanylate kinase T2SE PF00437.15 gi|282162727|ref|YP_003355112.1| - 0.0041 16.0 0.0 1.7 7.4 0.0 2.6 3 0 0 3 3 2 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|282162727|ref|YP_003355112.1| - 0.005 16.5 0.9 6.7 6.3 0.0 3.4 2 1 1 3 3 3 0 NTPase AAA_10 PF12846.2 gi|282162727|ref|YP_003355112.1| - 0.0054 16.2 0.2 1.4 8.2 0.1 2.7 2 1 0 2 2 2 1 AAA-like domain SKI PF01202.17 gi|282162727|ref|YP_003355112.1| - 0.0085 15.9 0.0 1.4 8.7 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase UPF0079 PF02367.12 gi|282162727|ref|YP_003355112.1| - 0.01 15.4 0.0 1.5 8.4 0.0 2.7 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Viral_helicase1 PF01443.13 gi|282162727|ref|YP_003355112.1| - 0.01 15.3 0.0 3.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Vps4_C PF09336.5 gi|282162727|ref|YP_003355112.1| - 0.017 15.0 0.0 5 7.0 0.0 3.3 3 0 0 3 3 2 0 Vps4 C terminal oligomerisation domain MCM PF00493.18 gi|282162727|ref|YP_003355112.1| - 0.032 13.0 0.0 7.8 5.1 0.0 2.8 2 1 0 2 2 2 0 MCM2/3/5 family SRPRB PF09439.5 gi|282162727|ref|YP_003355112.1| - 0.038 13.2 0.0 4.4 6.4 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PduV-EutP PF10662.4 gi|282162727|ref|YP_003355112.1| - 0.044 13.2 0.0 11 5.5 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|282162727|ref|YP_003355112.1| - 0.049 13.5 0.0 18 5.3 0.0 2.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase Miro PF08477.8 gi|282162727|ref|YP_003355112.1| - 0.055 13.9 0.0 2.4 8.6 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein AAA_29 PF13555.1 gi|282162727|ref|YP_003355112.1| - 0.055 12.9 0.0 11 5.6 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|282162727|ref|YP_003355112.1| - 0.063 13.6 0.0 9.8 6.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|282162727|ref|YP_003355112.1| - 0.077 12.4 0.2 11 5.3 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AFG1_ATPase PF03969.11 gi|282162727|ref|YP_003355112.1| - 0.083 11.6 0.0 6.2 5.5 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase KTI12 PF08433.5 gi|282162727|ref|YP_003355112.1| - 0.091 11.9 0.0 11 5.1 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Molydop_binding PF01568.16 gi|282162727|ref|YP_003355112.1| - 0.1 12.4 0.1 0.42 10.4 0.1 2.0 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain ADH_N PF08240.7 gi|282162728|ref|YP_003355113.1| - 4e-18 65.1 0.7 6.6e-18 64.4 0.5 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain Shikimate_DH PF01488.15 gi|282162728|ref|YP_003355113.1| - 0.00046 20.3 0.0 0.00082 19.4 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ADH_zinc_N PF00107.21 gi|282162728|ref|YP_003355113.1| - 0.00099 18.6 0.0 0.0026 17.3 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase FAD_binding_3 PF01494.14 gi|282162728|ref|YP_003355113.1| - 0.015 14.3 0.0 0.023 13.7 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain NAD_binding_8 PF13450.1 gi|282162728|ref|YP_003355113.1| - 0.13 12.2 0.0 0.84 9.7 0.0 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain His_Phos_2 PF00328.17 gi|282162729|ref|YP_003355114.1| - 0.022 14.1 0.7 0.027 13.8 0.5 1.1 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 2) Glycos_trans_3N PF02885.12 gi|282162730|ref|YP_003355115.1| - 4.3e-17 61.4 0.1 8.1e-17 60.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.8 gi|282162730|ref|YP_003355115.1| - 4.1e-13 48.5 0.4 1.8e-12 46.4 0.1 2.3 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.16 gi|282162730|ref|YP_003355115.1| - 5e-13 49.0 3.3 2.1e-12 46.9 1.3 2.4 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain Molydop_binding PF01568.16 gi|282162730|ref|YP_003355115.1| - 3.2e-05 23.6 0.1 6.6e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain HlyD_3 PF13437.1 gi|282162730|ref|YP_003355115.1| - 0.0003 21.1 0.6 0.023 15.0 0.0 3.6 4 0 0 4 4 4 1 HlyD family secretion protein Biotin_lipoyl PF00364.17 gi|282162730|ref|YP_003355115.1| - 0.00067 19.2 0.8 0.19 11.3 0.0 4.2 3 1 0 3 3 3 1 Biotin-requiring enzyme DUF2254 PF10011.4 gi|282162730|ref|YP_003355115.1| - 0.0071 14.8 0.0 0.01 14.3 0.0 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) CDC48_N PF02359.13 gi|282162730|ref|YP_003355115.1| - 0.012 15.5 0.4 0.097 12.6 0.1 2.6 3 0 0 3 3 3 0 Cell division protein 48 (CDC48), N-terminal domain Biotin_lipoyl_2 PF13533.1 gi|282162730|ref|YP_003355115.1| - 0.05 13.2 0.0 0.39 10.4 0.0 2.3 1 1 0 1 1 1 0 Biotin-lipoyl like HlyD_2 PF12700.2 gi|282162730|ref|YP_003355115.1| - 0.051 12.7 0.0 0.11 11.6 0.0 1.5 1 0 0 1 1 1 0 HlyD family secretion protein Prok-RING_1 PF14446.1 gi|282162731|ref|YP_003355116.1| - 6.1e-15 54.6 10.1 8.1e-15 54.3 7.0 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 C1_1 PF00130.17 gi|282162731|ref|YP_003355116.1| - 0.0011 18.6 9.8 0.049 13.3 7.8 2.0 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) PHD PF00628.24 gi|282162731|ref|YP_003355116.1| - 0.039 13.6 10.8 0.15 11.7 7.5 1.9 1 1 1 2 2 2 0 PHD-finger DNA_RNApol_7kD PF03604.8 gi|282162731|ref|YP_003355116.1| - 0.041 13.3 7.2 0.26 10.8 0.2 3.0 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|282162731|ref|YP_003355116.1| - 0.061 13.1 7.9 0.57 10.0 5.1 2.1 1 1 1 2 2 2 0 Double zinc ribbon SPT2 PF08243.6 gi|282162731|ref|YP_003355116.1| - 0.11 12.7 0.9 0.18 12.1 0.6 1.4 1 0 0 1 1 1 0 SPT2 chromatin protein A2L_zn_ribbon PF08792.5 gi|282162731|ref|YP_003355116.1| - 0.34 10.4 5.7 7.4 6.1 0.1 2.7 2 1 0 2 2 2 0 A2L zinc ribbon domain DUF282 PF03380.9 gi|282162731|ref|YP_003355116.1| - 0.39 10.4 3.8 1.6 8.5 2.6 1.9 1 1 0 1 1 1 0 Caenorhabditis protein of unknown function, DUF282 C1_3 PF07649.7 gi|282162731|ref|YP_003355116.1| - 0.4 10.7 6.5 2.9 8.0 1.5 2.3 2 0 0 2 2 2 0 C1-like domain zinc-ribbons_6 PF07191.7 gi|282162731|ref|YP_003355116.1| - 0.47 10.2 6.5 0.73 9.6 4.5 1.4 1 0 0 1 1 1 0 zinc-ribbons DUF4206 PF13901.1 gi|282162731|ref|YP_003355116.1| - 1.5 8.3 9.0 2.2 7.7 6.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4206) HypA PF01155.14 gi|282162731|ref|YP_003355116.1| - 1.7 8.3 8.0 5.2 6.7 5.5 1.6 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family PHD_2 PF13831.1 gi|282162731|ref|YP_003355116.1| - 1.9 7.8 12.1 4.3 6.7 5.4 2.7 1 1 1 2 2 2 0 PHD-finger zf-C2H2 PF00096.21 gi|282162731|ref|YP_003355116.1| - 4.2 7.8 6.4 2.3 8.7 1.2 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type PIN PF01850.16 gi|282162733|ref|YP_003355118.1| - 8.6e-07 29.3 0.0 1.1e-06 29.0 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|282162733|ref|YP_003355118.1| - 0.037 14.6 0.0 0.055 14.1 0.0 1.6 1 1 0 1 1 1 0 PIN domain DEAD PF00270.24 gi|282162734|ref|YP_003355119.1| - 1.6e-25 89.5 0.0 6.4e-25 87.5 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|282162734|ref|YP_003355119.1| - 1.5e-12 47.1 0.0 3.1e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|282162734|ref|YP_003355119.1| - 5.8e-06 26.2 0.0 1.3e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|282162734|ref|YP_003355119.1| - 0.00094 18.0 0.0 0.0013 17.6 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain HemN_C PF06969.11 gi|282162734|ref|YP_003355119.1| - 0.06 13.4 0.0 0.2 11.7 0.0 2.0 1 0 0 1 1 1 0 HemN C-terminal domain HTH_24 PF13412.1 gi|282162736|ref|YP_003355121.1| - 2.5e-10 39.5 0.0 8.3e-10 37.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|282162736|ref|YP_003355121.1| - 3.1e-10 39.5 0.1 5.5e-09 35.5 0.0 2.3 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|282162736|ref|YP_003355121.1| - 3e-07 30.0 0.0 7.4e-07 28.7 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|282162736|ref|YP_003355121.1| - 6.3e-07 29.6 0.1 2.6e-06 27.6 0.0 2.0 3 0 0 3 3 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|282162736|ref|YP_003355121.1| - 1.7e-06 27.6 0.1 1.2e-05 25.0 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_45 PF14947.1 gi|282162736|ref|YP_003355121.1| - 1.6e-05 24.6 0.0 2.7e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|282162736|ref|YP_003355121.1| - 3.3e-05 23.4 0.3 0.00031 20.3 0.1 2.5 3 0 0 3 3 3 1 HTH domain HTH_5 PF01022.15 gi|282162736|ref|YP_003355121.1| - 0.00091 18.8 0.0 0.0026 17.3 0.0 1.9 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|282162736|ref|YP_003355121.1| - 0.0013 18.8 0.5 0.0043 17.1 0.0 2.1 2 1 0 2 2 2 1 Transcriptional regulator DUF4423 PF14394.1 gi|282162736|ref|YP_003355121.1| - 0.0028 17.2 0.0 0.0094 15.5 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_13 PF11972.3 gi|282162736|ref|YP_003355121.1| - 0.0029 17.4 0.1 0.011 15.6 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain Fe_dep_repress PF01325.14 gi|282162736|ref|YP_003355121.1| - 0.0032 17.3 0.0 0.017 15.0 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|282162736|ref|YP_003355121.1| - 0.0036 16.9 0.0 0.0077 15.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|282162736|ref|YP_003355121.1| - 0.0051 16.4 0.1 0.017 14.7 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|282162736|ref|YP_003355121.1| - 0.0091 15.7 0.0 0.024 14.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|282162736|ref|YP_003355121.1| - 0.011 15.6 0.0 0.057 13.2 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix GntR PF00392.16 gi|282162736|ref|YP_003355121.1| - 0.013 14.9 0.1 0.11 11.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_29 PF13551.1 gi|282162736|ref|YP_003355121.1| - 0.018 15.1 0.0 0.043 13.9 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix HTH_IclR PF09339.5 gi|282162736|ref|YP_003355121.1| - 0.02 14.4 0.0 0.05 13.1 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HemN_C PF06969.11 gi|282162736|ref|YP_003355121.1| - 0.029 14.4 0.0 0.25 11.4 0.0 2.4 3 0 0 3 3 2 0 HemN C-terminal domain HTH_36 PF13730.1 gi|282162736|ref|YP_003355121.1| - 0.032 14.3 0.0 0.11 12.6 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain Mnd1 PF03962.10 gi|282162736|ref|YP_003355121.1| - 0.038 13.6 0.0 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 Mnd1 family Nitro_FeMo-Co PF02579.12 gi|282162736|ref|YP_003355121.1| - 0.041 13.9 2.0 1.5 8.8 0.2 2.5 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor HTH_10 PF04967.7 gi|282162736|ref|YP_003355121.1| - 0.045 13.3 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain KorB PF08535.5 gi|282162736|ref|YP_003355121.1| - 0.064 13.4 0.0 0.26 11.4 0.0 2.2 2 0 0 2 2 1 0 KorB domain HTH_28 PF13518.1 gi|282162736|ref|YP_003355121.1| - 0.084 12.9 0.0 0.25 11.3 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain SLH PF00395.15 gi|282162736|ref|YP_003355121.1| - 0.084 12.6 1.8 3.2 7.5 0.0 3.2 3 1 1 4 4 3 0 S-layer homology domain RPA_C PF08784.6 gi|282162736|ref|YP_003355121.1| - 0.091 13.1 0.1 1.2 9.5 0.0 2.2 2 0 0 2 2 2 0 Replication protein A C terminal RuvB_C PF05491.8 gi|282162736|ref|YP_003355121.1| - 0.17 11.5 0.9 0.44 10.2 0.0 2.1 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB C-terminus DUF3739 PF12545.3 gi|282162736|ref|YP_003355121.1| - 0.79 9.8 4.9 1 9.5 0.8 2.3 1 1 0 2 2 2 0 Filamentous haemagglutinin family outer membrane protein ArsR PF09824.4 gi|282162737|ref|YP_003355122.1| - 7.9e-66 220.3 0.1 9e-66 220.1 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator DUF387 PF04079.11 gi|282162737|ref|YP_003355122.1| - 0.0016 17.7 0.1 0.0073 15.6 0.0 1.9 1 1 1 2 2 2 1 Putative transcriptional regulators (Ypuh-like) Sua5_yciO_yrdC PF01300.13 gi|282162738|ref|YP_003355123.1| - 1.2e-41 141.9 0.0 1.9e-41 141.2 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination Acylphosphatase PF00708.13 gi|282162738|ref|YP_003355123.1| - 2e-24 85.5 0.0 3.9e-24 84.5 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase zf-HYPF PF07503.7 gi|282162738|ref|YP_003355123.1| - 2e-22 78.2 12.4 1.3e-16 59.6 3.3 2.4 2 0 0 2 2 2 2 HypF finger Peptidase_M22 PF00814.20 gi|282162738|ref|YP_003355123.1| - 2.2e-07 30.6 0.1 5.3e-06 26.1 0.0 2.2 2 0 0 2 2 2 1 Glycoprotease family BcrAD_BadFG PF01869.15 gi|282162738|ref|YP_003355123.1| - 0.0058 15.9 0.0 0.01 15.1 0.0 1.3 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family PsaM PF07465.8 gi|282162738|ref|YP_003355123.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Photosystem I protein M (PsaM) zf-RING_5 PF14634.1 gi|282162738|ref|YP_003355123.1| - 2.2 8.0 8.1 2.4 7.9 0.7 2.7 2 0 0 2 2 2 0 zinc-RING finger domain Bactofilin PF04519.8 gi|282162739|ref|YP_003355124.1| - 5.4e-05 23.1 0.5 0.00012 21.9 0.2 1.7 1 1 0 1 1 1 1 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|282162739|ref|YP_003355124.1| - 0.0075 15.7 1.5 0.63 9.6 0.1 3.1 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) AhpC-TSA PF00578.16 gi|282162740|ref|YP_003355125.1| - 6.8e-39 132.3 0.0 8.6e-39 132.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|282162740|ref|YP_003355125.1| - 9.5e-17 60.8 0.0 1.2e-16 60.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|282162740|ref|YP_003355125.1| - 3.7e-05 23.2 0.0 0.00012 21.6 0.0 1.9 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Zn_Tnp_IS91 PF14319.1 gi|282162741|ref|YP_003355126.1| - 0.0015 18.0 0.1 0.1 12.1 0.0 2.2 2 0 0 2 2 2 1 Transposase zinc-binding domain HypA PF01155.14 gi|282162741|ref|YP_003355126.1| - 0.0037 16.9 2.6 0.44 10.2 0.1 2.1 2 0 0 2 2 2 2 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|282162741|ref|YP_003355126.1| - 0.0099 15.3 10.0 0.12 11.8 0.0 4.1 4 0 0 4 4 4 1 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|282162741|ref|YP_003355126.1| - 0.012 14.7 3.4 0.46 9.7 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain FYVE PF01363.16 gi|282162741|ref|YP_003355126.1| - 0.014 15.2 4.6 2.1 8.3 0.1 2.5 2 1 0 2 2 2 0 FYVE zinc finger zf-C2H2_3 PF13878.1 gi|282162741|ref|YP_003355126.1| - 0.022 14.3 4.1 2.5 7.7 0.1 2.9 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO DZR PF12773.2 gi|282162741|ref|YP_003355126.1| - 0.025 14.4 7.4 0.29 10.9 0.2 2.4 2 1 0 2 2 2 0 Double zinc ribbon DUF1451 PF07295.6 gi|282162741|ref|YP_003355126.1| - 0.057 13.1 5.5 0.64 9.7 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) FYVE_2 PF02318.11 gi|282162741|ref|YP_003355126.1| - 0.1 12.5 6.5 2.4 8.0 0.3 2.4 2 1 0 2 2 2 0 FYVE-type zinc finger DUF326 PF03860.11 gi|282162741|ref|YP_003355126.1| - 0.11 12.2 4.8 0.94 9.4 0.0 3.0 2 2 0 2 2 2 0 Domain of Unknown Function (DUF326) TF_Zn_Ribbon PF08271.7 gi|282162741|ref|YP_003355126.1| - 0.14 11.4 8.5 0.83 9.0 0.3 2.8 2 1 0 2 2 2 0 TFIIB zinc-binding XPA_N PF01286.13 gi|282162741|ref|YP_003355126.1| - 0.32 10.7 8.9 22 4.8 0.0 4.1 4 0 0 4 4 4 0 XPA protein N-terminal Zn_ribbon_recom PF13408.1 gi|282162741|ref|YP_003355126.1| - 0.61 10.3 6.0 7.4 6.9 0.5 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_6 PF14599.1 gi|282162741|ref|YP_003355126.1| - 0.7 9.7 6.4 4.8 7.0 0.7 2.4 2 0 0 2 2 2 0 Zinc-ribbon ADK_lid PF05191.9 gi|282162741|ref|YP_003355126.1| - 0.94 9.2 8.6 14 5.4 1.4 3.4 3 1 0 3 3 3 0 Adenylate kinase, active site lid zinc_ribbon_4 PF13717.1 gi|282162741|ref|YP_003355126.1| - 1.5 8.5 5.7 2.5 7.8 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|282162741|ref|YP_003355126.1| - 2.6 7.8 10.4 1.9 8.3 0.5 2.5 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 NinG PF05766.7 gi|282162741|ref|YP_003355126.1| - 5.2 6.7 9.8 6.8 6.3 0.5 2.3 2 1 0 2 2 2 0 Bacteriophage Lambda NinG protein Zn-ribbon_8 PF09723.5 gi|282162741|ref|YP_003355126.1| - 6.5 6.7 11.7 12 5.9 1.3 3.2 2 2 0 2 2 2 0 Zinc ribbon domain NMD3 PF04981.8 gi|282162741|ref|YP_003355126.1| - 6.9 5.7 9.0 1.8e+02 1.0 6.2 2.5 1 1 0 1 1 1 0 NMD3 family zinc_ribbon_2 PF13240.1 gi|282162741|ref|YP_003355126.1| - 7.3 6.2 10.4 23 4.6 3.4 2.9 2 1 0 2 2 2 0 zinc-ribbon domain zf-trcl PF13451.1 gi|282162741|ref|YP_003355126.1| - 7.3 6.3 8.8 4.6 6.9 0.1 3.6 4 0 0 4 4 4 0 Probable zinc-binding domain VWC PF00093.13 gi|282162741|ref|YP_003355126.1| - 8.5 6.5 9.8 15 5.8 1.2 2.4 2 1 0 2 2 2 0 von Willebrand factor type C domain Zn_Tnp_IS1595 PF12760.2 gi|282162741|ref|YP_003355126.1| - 8.8 6.2 10.8 7.8 6.4 0.4 2.8 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Rpr2 PF04032.11 gi|282162741|ref|YP_003355126.1| - 9.3 6.2 11.2 2.2 8.1 0.0 3.4 2 2 2 4 4 4 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain HD PF01966.17 gi|282162742|ref|YP_003355127.1| - 1.8e-16 60.2 1.3 1.8e-16 60.2 0.9 1.7 2 0 0 2 2 2 1 HD domain Metallophos_2 PF12850.2 gi|282162743|ref|YP_003355128.1| - 1.2e-10 41.4 0.0 2.8e-10 40.2 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain FBPase_2 PF06874.6 gi|282162743|ref|YP_003355128.1| - 0.014 13.4 0.0 0.025 12.6 0.0 1.4 1 1 1 2 2 2 0 Firmicute fructose-1,6-bisphosphatase Metallophos PF00149.23 gi|282162743|ref|YP_003355128.1| - 0.22 10.9 2.8 2.1 7.6 2.0 2.4 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase UBN_AB PF14075.1 gi|282162744|ref|YP_003355129.1| - 0.055 13.1 0.3 0.077 12.6 0.2 1.2 1 0 0 1 1 1 0 Ubinuclein conserved middle domain EamA PF00892.15 gi|282162745|ref|YP_003355130.1| - 4.6e-44 149.4 39.8 6.3e-22 77.9 12.9 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|282162745|ref|YP_003355130.1| - 3.5e-08 33.6 37.9 8.1e-06 26.0 4.9 3.7 2 2 2 4 4 4 2 Multidrug resistance efflux transporter UAA PF08449.6 gi|282162745|ref|YP_003355130.1| - 0.014 14.3 21.9 0.019 13.8 15.1 1.1 1 0 0 1 1 1 0 UAA transporter family TPT PF03151.11 gi|282162745|ref|YP_003355130.1| - 1.5 8.4 31.2 1.2 8.7 9.1 2.3 2 0 0 2 2 2 0 Triose-phosphate Transporter family GRP PF07172.6 gi|282162746|ref|YP_003355131.1| - 0.33 11.4 1.8 11 6.5 0.7 2.1 2 0 0 2 2 2 0 Glycine rich protein family LIME1 PF15332.1 gi|282162746|ref|YP_003355131.1| - 0.68 9.1 5.2 2.6 7.2 3.1 1.8 1 1 1 2 2 2 0 Lck-interacting transmembrane adapter 1 SNARE_assoc PF09335.6 gi|282162748|ref|YP_003355133.1| - 1.3e-22 80.2 7.7 1.3e-22 80.2 5.4 2.1 2 0 0 2 2 2 1 SNARE associated Golgi protein Oxidored_q1 PF00361.15 gi|282162748|ref|YP_003355133.1| - 0.0029 16.9 0.8 0.0029 16.9 0.6 2.1 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF362 PF04015.7 gi|282162749|ref|YP_003355134.1| - 5.3e-46 156.6 0.0 7.7e-46 156.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) TAT_signal PF10518.4 gi|282162749|ref|YP_003355134.1| - 0.00011 21.9 4.5 0.00011 21.9 3.1 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence ArsC PF03960.10 gi|282162749|ref|YP_003355134.1| - 0.019 15.0 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 ArsC family CobT_C PF11775.3 gi|282162749|ref|YP_003355134.1| - 0.067 12.6 0.0 0.098 12.0 0.0 1.2 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT VWA domain RskA PF10099.4 gi|282162749|ref|YP_003355134.1| - 0.075 12.7 1.1 0.14 11.9 0.8 1.4 1 0 0 1 1 1 0 Anti-sigma-K factor rskA Fer4 PF00037.22 gi|282162750|ref|YP_003355135.1| - 1.5e-23 81.4 67.0 5.5e-06 25.7 1.6 8.5 9 0 0 9 9 9 6 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282162750|ref|YP_003355135.1| - 2e-20 72.9 48.4 3.7e-07 30.4 5.5 5.3 6 0 0 6 6 5 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282162750|ref|YP_003355135.1| - 1.4e-19 69.0 59.7 1.5e-05 24.5 2.0 7.4 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282162750|ref|YP_003355135.1| - 6.3e-16 57.9 53.7 3.4e-06 26.7 11.1 5.2 1 1 5 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282162750|ref|YP_003355135.1| - 5.1e-15 55.4 53.1 4e-06 26.9 9.6 4.9 2 1 4 6 6 6 5 4Fe-4S dicluster domain Fer4_5 PF12801.2 gi|282162750|ref|YP_003355135.1| - 8.4e-15 54.3 27.0 1.1e-10 41.0 4.4 5.1 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282162750|ref|YP_003355135.1| - 2.9e-14 52.0 60.4 0.0015 18.3 1.9 7.0 7 0 0 7 7 7 6 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282162750|ref|YP_003355135.1| - 8.9e-14 51.9 53.0 0.00056 20.6 1.9 6.6 5 1 2 7 7 6 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|282162750|ref|YP_003355135.1| - 1.9e-12 46.8 50.8 8.2e-05 22.3 7.6 5.1 3 2 3 6 6 6 5 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282162750|ref|YP_003355135.1| - 9.7e-09 35.1 54.4 0.0072 16.3 10.6 5.3 2 1 5 7 7 7 6 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282162750|ref|YP_003355135.1| - 5.3e-08 33.1 48.6 0.03 14.7 0.1 6.9 5 2 1 7 7 7 4 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282162750|ref|YP_003355135.1| - 2.5e-05 24.2 68.5 0.052 13.8 3.1 7.2 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_3 PF12798.2 gi|282162750|ref|YP_003355135.1| - 7e-05 23.1 76.0 0.18 12.4 4.3 8.1 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_17 PF13534.1 gi|282162750|ref|YP_003355135.1| - 0.013 15.8 58.4 25 5.3 7.1 6.5 2 2 3 5 5 5 0 4Fe-4S dicluster domain HHH_8 PF14716.1 gi|282162751|ref|YP_003355136.1| - 9.3e-21 73.7 4.4 1.4e-18 66.8 1.1 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix domain PHP PF02811.14 gi|282162751|ref|YP_003355136.1| - 2e-13 50.5 0.0 6.4e-13 48.8 0.0 1.8 2 0 0 2 2 2 1 PHP domain DNA_pol_B_thumb PF14791.1 gi|282162751|ref|YP_003355136.1| - 1.4e-12 47.0 0.0 4.5e-12 45.4 0.0 1.9 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_5 PF14520.1 gi|282162751|ref|YP_003355136.1| - 7.9e-09 35.5 1.2 3.5e-06 27.0 0.1 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.18 gi|282162751|ref|YP_003355136.1| - 1.7e-07 30.5 1.3 0.00011 21.6 0.0 3.6 3 0 0 3 3 3 2 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|282162751|ref|YP_003355136.1| - 4.5e-06 26.4 0.8 0.73 10.0 0.0 3.6 3 0 0 3 3 3 3 IMS family HHH motif LigT_PEase PF02834.11 gi|282162752|ref|YP_003355137.1| - 2.8e-28 97.7 0.0 6.6e-14 51.6 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|282162752|ref|YP_003355137.1| - 8.5e-12 45.0 0.0 9.5e-12 44.8 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|282162752|ref|YP_003355137.1| - 5.4e-10 39.3 0.0 6.8e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain AAA_25 PF13481.1 gi|282162752|ref|YP_003355137.1| - 0.062 12.6 0.0 0.083 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain tRNA_NucTransf2 PF09249.6 gi|282162753|ref|YP_003355138.1| - 3e-44 149.5 0.0 5e-44 148.8 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|282162753|ref|YP_003355138.1| - 5.5e-11 42.6 0.1 1.4e-10 41.3 0.1 1.8 1 0 0 1 1 1 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.14 gi|282162754|ref|YP_003355139.1| - 1.1e-82 277.8 0.0 1.5e-82 277.4 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain TrmB PF01978.14 gi|282162755|ref|YP_003355140.1| - 0.00053 19.6 0.1 0.00091 18.8 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF387 PF04079.11 gi|282162755|ref|YP_003355140.1| - 0.0021 17.4 0.2 0.0038 16.6 0.1 1.5 1 1 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_27 PF13463.1 gi|282162755|ref|YP_003355140.1| - 0.035 14.4 0.2 0.077 13.3 0.1 1.7 1 1 1 2 2 2 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|282162755|ref|YP_003355140.1| - 0.039 13.6 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 MarR family PadR PF03551.9 gi|282162755|ref|YP_003355140.1| - 0.066 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family LOH1CR12 PF10158.4 gi|282162755|ref|YP_003355140.1| - 0.086 12.6 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 Tumour suppressor protein NTP_transf_2 PF01909.18 gi|282162756|ref|YP_003355141.1| - 7.4e-07 29.4 0.1 1.5e-06 28.4 0.1 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain CutA1 PF03091.10 gi|282162757|ref|YP_003355142.1| - 2e-29 101.2 0.2 2.3e-29 101.0 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Peptidase_M50 PF02163.17 gi|282162758|ref|YP_003355143.1| - 3.8e-28 97.7 2.0 8.6e-28 96.6 1.4 1.6 1 0 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.1 gi|282162758|ref|YP_003355143.1| - 5.6e-10 38.9 0.2 6.7e-05 22.6 0.0 2.4 1 1 1 2 2 2 2 PDZ domain PDZ PF00595.19 gi|282162758|ref|YP_003355143.1| - 9.9e-05 22.4 0.7 0.055 13.6 0.1 2.3 1 1 0 2 2 2 2 PDZ domain (Also known as DHR or GLGF) DUF3108 PF11306.3 gi|282162759|ref|YP_003355144.1| - 1.2e-05 25.1 3.0 0.0012 18.5 0.2 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3108) Radical_SAM PF04055.16 gi|282162760|ref|YP_003355145.1| - 1.7e-19 70.5 0.1 4.4e-19 69.2 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|282162760|ref|YP_003355145.1| - 5.4e-09 35.9 0.0 1e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain HTH_17 PF12728.2 gi|282162761|ref|YP_003355146.1| - 0.00061 19.9 0.2 0.0012 19.0 0.1 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|282162761|ref|YP_003355146.1| - 0.0014 18.2 0.1 0.0021 17.7 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4037 PF13228.1 gi|282162761|ref|YP_003355146.1| - 0.04 14.1 0.0 0.051 13.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4037) MarR_2 PF12802.2 gi|282162761|ref|YP_003355146.1| - 0.05 13.2 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.14 gi|282162761|ref|YP_003355146.1| - 0.08 12.8 0.0 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.11 gi|282162761|ref|YP_003355146.1| - 0.096 12.0 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_26 PF13443.1 gi|282162761|ref|YP_003355146.1| - 0.098 12.8 0.0 0.27 11.4 0.0 1.7 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.1 gi|282162761|ref|YP_003355146.1| - 0.11 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3504 PF12012.3 gi|282162761|ref|YP_003355146.1| - 0.13 12.0 0.1 0.32 10.7 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3504) Chordopox_A13L PF05961.6 gi|282162762|ref|YP_003355147.1| - 0.11 12.4 1.4 0.2 11.6 1.0 1.4 1 0 0 1 1 1 0 Chordopoxvirus A13L protein CARDB PF07705.6 gi|282162763|ref|YP_003355148.1| - 0.00017 21.6 0.0 0.034 14.1 0.0 2.9 2 1 0 2 2 2 1 CARDB DUF11 PF01345.13 gi|282162763|ref|YP_003355148.1| - 0.014 15.4 6.1 0.21 11.6 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function DUF11 Big_3_4 PF13754.1 gi|282162763|ref|YP_003355148.1| - 0.41 10.9 0.0 0.41 10.9 0.0 5.4 7 0 0 7 7 7 0 Bacterial Ig-like domain (group 3) DEC-1_N PF04625.8 gi|282162763|ref|YP_003355148.1| - 0.51 8.9 1.4 0.73 8.4 1.0 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region PA14 PF07691.7 gi|282162764|ref|YP_003355149.1| - 1.7e-11 43.9 0.0 2.1e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 PA14 domain DUF1628 PF07790.6 gi|282162765|ref|YP_003355150.1| - 3.8e-07 30.7 1.1 6.5e-07 30.0 0.3 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) Flavodoxin_5 PF12724.2 gi|282162766|ref|YP_003355151.1| - 2.6e-17 63.1 0.0 3.4e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|282162766|ref|YP_003355151.1| - 9.1e-07 28.5 0.1 7.8e-05 22.2 0.0 2.4 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|282162766|ref|YP_003355151.1| - 4.9e-06 26.5 0.0 8.4e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|282162766|ref|YP_003355151.1| - 1.6e-05 24.3 0.0 2.1e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|282162766|ref|YP_003355151.1| - 0.015 14.6 0.0 2 7.7 0.0 2.5 2 1 1 3 3 3 0 Flavodoxin dCMP_cyt_deam_1 PF00383.17 gi|282162767|ref|YP_003355152.1| - 6.6e-29 99.5 4.6 9.9e-29 99.0 3.2 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region XOO_2897-deam PF14440.1 gi|282162767|ref|YP_003355152.1| - 0.0033 17.1 0.3 0.0036 17.0 0.2 1.3 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase Bd3614-deam PF14439.1 gi|282162767|ref|YP_003355152.1| - 0.017 14.9 1.5 0.038 13.8 1.0 1.6 1 1 0 1 1 1 0 Bd3614-like deaminase APOBEC_N PF08210.6 gi|282162767|ref|YP_003355152.1| - 0.033 13.8 3.0 0.057 13.0 1.9 1.5 1 1 0 1 1 1 0 APOBEC-like N-terminal domain MafB19-deam PF14437.1 gi|282162767|ref|YP_003355152.1| - 0.055 13.0 3.0 0.079 12.5 2.1 1.2 1 0 0 1 1 1 0 MafB19-like deaminase CoA_binding_2 PF13380.1 gi|282162767|ref|YP_003355152.1| - 0.11 12.7 0.0 0.17 12.0 0.0 1.4 1 1 0 1 1 1 0 CoA binding domain DS PF01916.12 gi|282162768|ref|YP_003355153.1| - 1.5e-73 247.5 0.1 1.8e-73 247.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase DUF4388 PF14332.1 gi|282162768|ref|YP_003355153.1| - 0.11 12.3 0.0 0.68 9.8 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4388) DUF128 PF01995.11 gi|282162769|ref|YP_003355154.1| - 6.7e-95 316.5 0.4 7.5e-95 316.3 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 Mrr_cat PF04471.7 gi|282162770|ref|YP_003355155.1| - 0.0071 16.1 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease Fe-S_biosyn PF01521.15 gi|282162771|ref|YP_003355156.1| - 5.9e-09 35.8 0.1 6.4e-09 35.7 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis TrmB PF01978.14 gi|282162772|ref|YP_003355157.1| - 6.8e-06 25.7 0.1 1.4e-05 24.7 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|282162772|ref|YP_003355157.1| - 3.6e-05 22.8 0.0 6.7e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PLDc_2 PF13091.1 gi|282162772|ref|YP_003355157.1| - 0.00046 19.9 0.0 0.00078 19.1 0.0 1.4 1 0 0 1 1 1 1 PLD-like domain HTH_20 PF12840.2 gi|282162772|ref|YP_003355157.1| - 0.0092 15.7 0.1 0.063 13.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Glyco_trans_4_4 PF13579.1 gi|282162772|ref|YP_003355157.1| - 0.029 14.5 0.1 0.056 13.5 0.1 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain DUF2582 PF10771.4 gi|282162772|ref|YP_003355157.1| - 0.11 12.4 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) MarR_2 PF12802.2 gi|282162772|ref|YP_003355157.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 MarR family NTP_transferase PF00483.18 gi|282162773|ref|YP_003355158.1| - 7.9e-46 156.3 0.0 9.6e-46 156.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|282162773|ref|YP_003355158.1| - 5.1e-20 70.0 20.8 4.3e-07 29.1 0.9 5.3 1 1 4 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|282162773|ref|YP_003355158.1| - 6.3e-12 44.8 18.4 3.1e-05 23.4 1.0 5.4 1 1 4 5 5 5 5 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|282162773|ref|YP_003355158.1| - 6.8e-11 42.5 0.0 1.1e-10 41.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.7 gi|282162773|ref|YP_003355158.1| - 0.46 9.0 2.0 0.93 7.9 0.4 2.2 1 1 1 2 2 2 0 L-fucokinase KaiC PF06745.8 gi|282162774|ref|YP_003355159.1| - 1.2e-13 50.7 0.0 1.5e-11 43.8 0.0 2.3 2 0 0 2 2 2 1 KaiC Robl_LC7 PF03259.12 gi|282162774|ref|YP_003355159.1| - 6.7e-13 48.0 3.3 1.3e-12 47.0 0.9 2.4 3 0 0 3 3 2 1 Roadblock/LC7 domain Miro PF08477.8 gi|282162774|ref|YP_003355159.1| - 8.2e-10 39.2 0.0 1.5e-09 38.3 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Arf PF00025.16 gi|282162774|ref|YP_003355159.1| - 3.9e-09 35.9 0.0 6.4e-09 35.2 0.0 1.2 1 0 0 1 1 1 1 ADP-ribosylation factor family GTP_EFTU PF00009.22 gi|282162774|ref|YP_003355159.1| - 1.1e-08 34.7 0.1 2.6e-08 33.5 0.1 1.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_33 PF13671.1 gi|282162774|ref|YP_003355159.1| - 2.9e-05 23.9 0.0 5.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|282162774|ref|YP_003355159.1| - 6e-05 22.9 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|282162774|ref|YP_003355159.1| - 0.0017 17.6 0.0 0.0036 16.5 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AAA_29 PF13555.1 gi|282162774|ref|YP_003355159.1| - 0.0018 17.7 0.2 0.0054 16.2 0.1 1.8 1 1 0 1 1 1 1 P-loop containing region of AAA domain ATP_bind_1 PF03029.12 gi|282162774|ref|YP_003355159.1| - 0.0083 15.6 0.4 0.65 9.4 0.2 2.2 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Ras PF00071.17 gi|282162774|ref|YP_003355159.1| - 0.01 15.2 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 0 Ras family NTPase_1 PF03266.10 gi|282162774|ref|YP_003355159.1| - 0.012 15.3 0.4 0.032 13.9 0.2 1.8 2 0 0 2 2 2 0 NTPase AAA_17 PF13207.1 gi|282162774|ref|YP_003355159.1| - 0.016 16.0 0.0 0.039 14.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|282162774|ref|YP_003355159.1| - 0.021 14.8 0.0 0.042 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|282162774|ref|YP_003355159.1| - 0.027 13.9 0.2 0.078 12.4 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA PF00004.24 gi|282162774|ref|YP_003355159.1| - 0.036 14.2 0.2 0.13 12.4 0.1 2.0 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|282162774|ref|YP_003355159.1| - 0.04 14.0 0.0 0.086 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.7 gi|282162774|ref|YP_003355159.1| - 0.042 12.9 0.0 0.072 12.2 0.0 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region MutS_V PF00488.16 gi|282162774|ref|YP_003355159.1| - 0.047 13.0 0.0 0.083 12.2 0.0 1.4 1 0 0 1 1 1 0 MutS domain V PAXNEB PF05625.6 gi|282162774|ref|YP_003355159.1| - 0.059 12.2 0.0 0.084 11.6 0.0 1.1 1 0 0 1 1 1 0 PAXNEB protein MobB PF03205.9 gi|282162774|ref|YP_003355159.1| - 0.12 12.0 0.1 0.28 10.8 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|282162774|ref|YP_003355159.1| - 0.16 11.4 0.0 1.4 8.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|282162774|ref|YP_003355159.1| - 0.88 8.9 3.2 4.7 6.5 0.1 3.3 5 0 0 5 5 5 0 AAA domain KaiC PF06745.8 gi|282162775|ref|YP_003355160.1| - 0.002 17.3 0.1 0.0098 15.0 0.0 1.9 1 1 0 1 1 1 1 KaiC DUF835 PF05763.7 gi|282162775|ref|YP_003355160.1| - 0.074 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF835) AMMECR1 PF01871.12 gi|282162776|ref|YP_003355161.1| - 1.9e-58 196.3 0.0 2.3e-58 196.0 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 PhoU_div PF01865.11 gi|282162777|ref|YP_003355162.1| - 6e-50 169.3 4.8 6.7e-50 169.2 3.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 Transposase_22 PF02994.9 gi|282162777|ref|YP_003355162.1| - 0.24 9.8 3.1 4.4 5.6 2.1 2.0 1 1 1 2 2 2 0 L1 transposable element PHO4 PF01384.15 gi|282162778|ref|YP_003355163.1| - 8.2e-94 313.8 40.6 1e-93 313.5 28.2 1.1 1 0 0 1 1 1 1 Phosphate transporter family Myc_target_1 PF15179.1 gi|282162778|ref|YP_003355163.1| - 0.0018 17.8 4.8 0.058 12.9 0.3 2.2 2 0 0 2 2 2 2 Myc target protein 1 TraQ PF09679.5 gi|282162778|ref|YP_003355163.1| - 0.46 10.4 3.6 4.2 7.3 0.0 3.1 3 0 0 3 3 3 0 Type-F conjugative transfer system pilin chaperone (TraQ) DUF912 PF06024.7 gi|282162778|ref|YP_003355163.1| - 4.7 7.3 5.0 40 4.3 0.3 2.6 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Amidohydro_4 PF13147.1 gi|282162779|ref|YP_003355164.1| - 2e-39 136.3 2.7 2.5e-39 135.9 1.9 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|282162779|ref|YP_003355164.1| - 1.9e-26 93.4 0.0 3.9e-25 89.2 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|282162779|ref|YP_003355164.1| - 1.4e-11 44.0 0.1 3.3e-11 42.8 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|282162779|ref|YP_003355164.1| - 2.1e-10 40.3 1.4 4.5e-08 32.7 0.3 2.9 2 1 0 2 2 2 2 Amidohydrolase family DHOase PF12890.2 gi|282162779|ref|YP_003355164.1| - 0.12 12.0 0.0 0.44 10.2 0.0 1.9 1 1 0 1 1 1 0 Dihydro-orotase-like Cation_efflux PF01545.16 gi|282162780|ref|YP_003355165.1| - 2.6e-60 203.9 7.2 3.2e-60 203.6 5.0 1.0 1 0 0 1 1 1 1 Cation efflux family DUF4149 PF13664.1 gi|282162780|ref|YP_003355165.1| - 0.034 14.2 1.4 0.05 13.6 0.1 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4149) TctB PF07331.6 gi|282162780|ref|YP_003355165.1| - 5.8 6.5 11.1 7 6.2 2.3 2.3 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family DUF167 PF02594.11 gi|282162781|ref|YP_003355166.1| - 1.6e-20 72.8 0.0 1.9e-20 72.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Peptidase_M15_3 PF08291.6 gi|282162781|ref|YP_003355166.1| - 0.073 12.8 0.0 0.096 12.5 0.0 1.2 1 0 0 1 1 1 0 Peptidase M15 Toprim_4 PF13662.1 gi|282162782|ref|YP_003355167.1| - 2.9e-06 27.1 0.0 4.3e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|282162782|ref|YP_003355167.1| - 3.1e-05 23.8 0.0 0.00014 21.7 0.0 1.9 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|282162782|ref|YP_003355167.1| - 0.00033 20.9 0.0 0.00039 20.6 0.0 1.1 1 0 0 1 1 1 1 Toprim-like Toprim_4 PF13662.1 gi|282162783|ref|YP_003355168.1| - 9.2e-11 41.6 0.2 2.4e-10 40.2 0.1 1.8 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|282162783|ref|YP_003355168.1| - 1.9e-06 27.7 2.3 0.00015 21.6 0.1 3.2 2 1 1 3 3 3 1 Toprim domain Toprim_2 PF13155.1 gi|282162783|ref|YP_003355168.1| - 0.025 14.9 0.0 0.068 13.4 0.0 1.8 1 0 0 1 1 1 0 Toprim-like Yae1_N PF09811.4 gi|282162783|ref|YP_003355168.1| - 0.042 13.3 0.1 0.33 10.5 0.1 2.4 1 1 0 1 1 1 0 Essential protein Yae1, N terminal Acetyltransf_1 PF00583.19 gi|282162784|ref|YP_003355169.1| - 1.4e-12 47.4 0.1 2.4e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|282162784|ref|YP_003355169.1| - 6.5e-11 42.2 0.0 1.1e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|282162784|ref|YP_003355169.1| - 7.7e-10 38.9 0.0 9.6e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|282162784|ref|YP_003355169.1| - 8.5e-09 35.0 0.1 1.2e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|282162784|ref|YP_003355169.1| - 1.1e-07 31.8 0.0 3.6e-07 30.1 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|282162784|ref|YP_003355169.1| - 6.6e-07 29.3 0.0 8.4e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|282162784|ref|YP_003355169.1| - 0.001 18.4 0.2 0.0016 17.8 0.2 1.4 1 1 0 1 1 1 1 GNAT acetyltransferase 2 UPF0146 PF03686.8 gi|282162785|ref|YP_003355170.1| - 3.8e-34 117.2 0.0 4.3e-34 117.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) CHAT PF12770.2 gi|282162786|ref|YP_003355171.1| - 0.0015 17.7 0.0 0.0029 16.7 0.0 1.4 1 0 0 1 1 1 1 CHAT domain DUF2207 PF09972.4 gi|282162787|ref|YP_003355172.1| - 6.5 5.2 15.4 9.4e+02 -2.0 10.7 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) GatB_N PF02934.10 gi|282162788|ref|YP_003355173.1| - 2.5e-72 243.1 0.0 3.5e-72 242.7 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|282162788|ref|YP_003355173.1| - 7.4e-22 77.6 0.1 1.5e-21 76.6 0.0 1.5 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|282162788|ref|YP_003355173.1| - 2.3e-16 59.7 0.3 9.4e-16 57.7 0.0 2.2 3 0 0 3 3 3 1 GAD domain YqeY PF09424.5 gi|282162788|ref|YP_003355173.1| - 0.0003 20.6 0.5 0.00091 19.1 0.2 2.0 1 1 0 1 1 1 1 Yqey-like protein DUF826 PF05696.6 gi|282162788|ref|YP_003355173.1| - 0.36 11.0 4.0 0.65 10.1 1.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF826) Asparaginase PF00710.15 gi|282162789|ref|YP_003355174.1| - 8.6e-91 304.0 0.4 1e-90 303.8 0.3 1.0 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|282162789|ref|YP_003355174.1| - 0.025 13.9 0.0 0.2 10.9 0.0 2.1 2 0 0 2 2 2 0 Periplasmic binding protein domain Lyase_1 PF00206.15 gi|282162790|ref|YP_003355175.1| - 6.2e-63 212.8 0.4 1.8e-62 211.3 0.0 1.8 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.1 gi|282162790|ref|YP_003355175.1| - 6.1e-11 42.2 0.0 2.3e-10 40.3 0.0 2.1 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Radical_SAM PF04055.16 gi|282162791|ref|YP_003355176.1| - 2.1e-23 83.3 0.0 4.8e-23 82.1 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|282162791|ref|YP_003355176.1| - 6e-05 23.0 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|282162791|ref|YP_003355176.1| - 0.00057 20.0 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain APH PF01636.18 gi|282162792|ref|YP_003355177.1| - 4.3e-08 33.1 0.0 0.0012 18.6 0.0 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|282162792|ref|YP_003355177.1| - 5.3e-06 25.9 0.1 6.2e-05 22.4 0.0 2.2 2 0 0 2 2 2 1 RIO1 family Pkinase PF00069.20 gi|282162792|ref|YP_003355177.1| - 2.6e-05 23.5 0.1 4.4e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|282162792|ref|YP_003355177.1| - 5.5e-05 22.5 1.2 0.00032 20.0 0.0 2.6 3 0 0 3 3 3 1 Lipopolysaccharide core biosynthesis protein (WaaY) Kdo PF06293.9 gi|282162792|ref|YP_003355177.1| - 0.019 14.0 0.2 0.16 10.9 0.0 2.3 2 1 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family PIN_4 PF13638.1 gi|282162794|ref|YP_003355179.1| - 0.092 12.8 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 PIN domain AIRC PF00731.15 gi|282162795|ref|YP_003355180.1| - 1.7e-44 150.6 2.3 1.9e-44 150.5 1.6 1.0 1 0 0 1 1 1 1 AIR carboxylase DXP_reductoisom PF02670.11 gi|282162795|ref|YP_003355180.1| - 0.1 13.1 0.0 0.12 12.8 0.0 1.3 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DUF2198 PF09964.4 gi|282162796|ref|YP_003355181.1| - 0.004 16.8 3.4 0.0047 16.6 2.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2198) Peptidase_U4 PF03419.8 gi|282162796|ref|YP_003355181.1| - 0.0089 15.1 1.2 0.01 14.9 0.8 1.0 1 0 0 1 1 1 1 Sporulation factor SpoIIGA IncA PF04156.9 gi|282162796|ref|YP_003355181.1| - 0.013 15.1 0.8 0.014 14.9 0.5 1.1 1 0 0 1 1 1 0 IncA protein ABC_membrane PF00664.18 gi|282162796|ref|YP_003355181.1| - 0.014 14.8 0.6 0.017 14.5 0.4 1.0 1 0 0 1 1 1 0 ABC transporter transmembrane region O-antigen_lig PF13425.1 gi|282162796|ref|YP_003355181.1| - 0.039 13.9 2.6 0.044 13.7 1.8 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF1129 PF06570.6 gi|282162796|ref|YP_003355181.1| - 0.056 12.7 1.9 0.061 12.6 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2157 PF09925.4 gi|282162796|ref|YP_003355181.1| - 0.088 12.4 2.6 0.1 12.1 1.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF1469 PF07332.6 gi|282162796|ref|YP_003355181.1| - 0.38 10.4 4.1 0.43 10.3 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF3040 PF11239.3 gi|282162796|ref|YP_003355181.1| - 1.1 9.3 3.6 1.4 9.0 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Transpep_BrtH PF14399.1 gi|282162798|ref|YP_003355183.1| - 2.5e-75 253.7 0.0 2.8e-75 253.5 0.0 1.0 1 0 0 1 1 1 1 NlpC/p60-like transpeptidase Peptidase_C39_2 PF13529.1 gi|282162798|ref|YP_003355183.1| - 0.00031 21.0 0.0 0.0008 19.7 0.0 1.7 1 1 0 1 1 1 1 Peptidase_C39 like family DEAD_assoc PF08494.6 gi|282162799|ref|YP_003355184.1| - 1.1e-44 152.3 0.1 3.1e-44 150.9 0.1 1.8 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|282162799|ref|YP_003355184.1| - 2.1e-36 124.9 0.0 1.4e-34 118.9 0.0 2.8 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|282162799|ref|YP_003355184.1| - 2.5e-17 62.5 0.1 1.1e-16 60.4 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|282162799|ref|YP_003355184.1| - 5.8e-09 36.0 0.0 1.1e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|282162799|ref|YP_003355184.1| - 2.6e-05 23.1 0.0 0.00021 20.2 0.0 2.0 2 0 0 2 2 2 1 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|282162799|ref|YP_003355184.1| - 0.00024 20.7 0.1 0.0011 18.6 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain PhoH PF02562.11 gi|282162799|ref|YP_003355184.1| - 0.00063 19.0 0.0 0.0022 17.2 0.0 1.9 1 0 0 1 1 1 1 PhoH-like protein Zn-ribbon_8 PF09723.5 gi|282162799|ref|YP_003355184.1| - 0.0062 16.4 0.5 0.012 15.4 0.4 1.5 1 0 0 1 1 1 1 Zinc ribbon domain SecA_DEAD PF07517.9 gi|282162799|ref|YP_003355184.1| - 0.007 15.6 0.0 0.0085 15.4 0.0 1.3 1 0 0 1 1 1 1 SecA DEAD-like domain AAA_30 PF13604.1 gi|282162799|ref|YP_003355184.1| - 0.011 15.3 0.0 0.069 12.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain UvrD-helicase PF00580.16 gi|282162799|ref|YP_003355184.1| - 0.02 14.1 0.0 0.039 13.2 0.0 1.5 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain DNA_ligase_ZBD PF03119.11 gi|282162799|ref|YP_003355184.1| - 0.088 12.5 0.3 0.26 11.0 0.2 1.8 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain AAA_11 PF13086.1 gi|282162799|ref|YP_003355184.1| - 0.093 12.2 0.0 0.85 9.1 0.0 2.2 1 1 1 2 2 2 0 AAA domain Rad50_zn_hook PF04423.9 gi|282162799|ref|YP_003355184.1| - 0.12 11.8 0.3 4.6 6.7 0.1 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif TBP PF00352.16 gi|282162800|ref|YP_003355185.1| - 2.8e-66 218.8 0.0 4.4e-32 109.3 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|282162800|ref|YP_003355185.1| - 3.4e-05 23.8 0.0 0.11 12.6 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF1390 PF07150.6 gi|282162800|ref|YP_003355185.1| - 0.00042 19.7 0.1 0.0024 17.2 0.1 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF1390) CENP-F_C_Rb_bdg PF10490.4 gi|282162800|ref|YP_003355185.1| - 0.075 12.3 0.6 10 5.5 0.1 2.3 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 MarC PF01914.12 gi|282162801|ref|YP_003355186.1| - 8.8e-58 194.7 12.3 9.9e-58 194.5 8.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF39 PF01837.11 gi|282162802|ref|YP_003355187.1| - 1.9e-149 496.9 0.8 2.4e-149 496.6 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|282162802|ref|YP_003355187.1| - 1.9e-28 97.9 0.7 1.2e-13 50.6 0.1 2.7 2 0 0 2 2 2 2 CBS domain Fer4 PF00037.22 gi|282162803|ref|YP_003355188.1| - 3.2e-16 58.1 18.0 4.7e-09 35.4 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282162803|ref|YP_003355188.1| - 7.8e-16 58.1 29.5 1.5e-11 44.4 10.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282162803|ref|YP_003355188.1| - 7.8e-15 54.0 17.2 2.8e-08 33.2 3.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|282162803|ref|YP_003355188.1| - 2.4e-12 46.9 9.6 5.3e-07 29.8 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282162803|ref|YP_003355188.1| - 5.2e-12 44.9 16.3 5.1e-06 26.0 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|282162803|ref|YP_003355188.1| - 7.4e-12 45.1 23.7 4.8e-09 36.1 8.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282162803|ref|YP_003355188.1| - 1.1e-10 41.1 25.3 3.1e-08 33.2 9.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282162803|ref|YP_003355188.1| - 5.5e-10 38.9 26.5 1.6e-07 31.0 9.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282162803|ref|YP_003355188.1| - 1.6e-09 38.3 8.6 4.5e-05 24.1 0.4 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|282162803|ref|YP_003355188.1| - 1.6e-07 31.6 16.5 0.00088 19.6 2.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282162803|ref|YP_003355188.1| - 2.3e-07 30.5 17.4 2.8e-05 24.1 1.3 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|282162803|ref|YP_003355188.1| - 2.5e-06 27.3 7.0 4e-06 26.6 4.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|282162803|ref|YP_003355188.1| - 9.7e-06 25.7 25.8 0.0017 18.8 7.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|282162803|ref|YP_003355188.1| - 2e-05 25.0 12.4 0.0092 16.5 1.2 2.7 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|282162803|ref|YP_003355188.1| - 2.8e-05 24.3 13.4 0.0097 16.2 9.3 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain NIL PF09383.5 gi|282162803|ref|YP_003355188.1| - 0.00032 20.1 0.0 0.00041 19.8 0.0 1.2 1 0 0 1 1 1 1 NIL domain Fer4_13 PF13370.1 gi|282162803|ref|YP_003355188.1| - 0.00032 21.0 11.2 0.015 15.6 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Trp_syntA PF00290.15 gi|282162803|ref|YP_003355188.1| - 0.089 11.3 0.1 0.1 11.1 0.1 1.1 1 0 0 1 1 1 0 Tryptophan synthase alpha chain DUF3133 PF11331.3 gi|282162803|ref|YP_003355188.1| - 0.2 11.2 3.5 7.7 6.1 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) YhfH PF14149.1 gi|282162803|ref|YP_003355188.1| - 4.1 7.2 7.4 1.7 8.4 0.4 2.4 2 0 0 2 2 2 0 YhfH-like protein DUF678 PF05077.7 gi|282162803|ref|YP_003355188.1| - 5.4 7.0 7.2 6.3 6.8 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Fer4_19 PF06902.6 gi|282162803|ref|YP_003355188.1| - 8.9 6.2 12.5 6.3e+02 0.3 8.6 2.8 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster ApbE PF02424.10 gi|282162804|ref|YP_003355189.1| - 1.7e-19 70.1 2.7 2.4e-19 69.6 1.9 1.1 1 0 0 1 1 1 1 ApbE family Glycos_transf_2 PF00535.21 gi|282162805|ref|YP_003355190.1| - 2.9e-28 98.6 0.1 7.5e-28 97.3 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282162805|ref|YP_003355190.1| - 3.4e-19 69.5 0.0 2.6e-18 66.6 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|282162805|ref|YP_003355190.1| - 4.1e-13 49.0 0.0 3.9e-06 26.1 0.0 2.0 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|282162805|ref|YP_003355190.1| - 2.4e-09 36.6 0.0 3.4e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|282162805|ref|YP_003355190.1| - 1.4e-08 34.7 0.0 2e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.9 gi|282162805|ref|YP_003355190.1| - 2.3e-06 26.9 0.0 3.9e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_5 PF13712.1 gi|282162805|ref|YP_003355190.1| - 3.9e-06 26.2 0.1 0.033 13.4 0.0 2.7 1 1 1 2 2 2 2 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.1 gi|282162805|ref|YP_003355190.1| - 0.003 17.8 0.0 0.0051 17.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF2345 PF10106.4 gi|282162806|ref|YP_003355191.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2345) DUF460 PF04312.8 gi|282162807|ref|YP_003355192.1| - 1.1e-50 170.7 1.5 2.2e-50 169.7 0.7 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) BLOC1_2 PF10046.4 gi|282162807|ref|YP_003355192.1| - 0.016 15.3 1.9 5.2 7.2 0.3 2.9 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IZUMO PF15005.1 gi|282162807|ref|YP_003355192.1| - 0.024 14.6 0.2 0.061 13.3 0.1 1.7 1 0 0 1 1 1 0 Izumo sperm-egg fusion Macoilin PF09726.4 gi|282162807|ref|YP_003355192.1| - 0.038 12.2 2.5 0.064 11.5 1.7 1.2 1 0 0 1 1 1 0 Transmembrane protein DUF904 PF06005.7 gi|282162807|ref|YP_003355192.1| - 0.072 13.3 0.1 0.072 13.3 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF904) DivIC PF04977.10 gi|282162807|ref|YP_003355192.1| - 0.076 12.5 0.2 0.076 12.5 0.2 3.9 5 0 0 5 5 5 0 Septum formation initiator ATG16 PF08614.6 gi|282162807|ref|YP_003355192.1| - 0.52 10.0 10.0 0.85 9.4 1.9 2.9 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) GAS PF13851.1 gi|282162807|ref|YP_003355192.1| - 1.5 7.9 8.7 7.3 5.7 6.0 2.2 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding IncA PF04156.9 gi|282162807|ref|YP_003355192.1| - 2.2 7.8 9.2 1.2 8.7 1.9 2.1 1 1 0 1 1 1 0 IncA protein Nup54 PF13874.1 gi|282162807|ref|YP_003355192.1| - 2.4 7.8 8.1 7.2 6.2 5.1 2.1 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 Cep57_MT_bd PF06657.8 gi|282162807|ref|YP_003355192.1| - 2.6 8.0 7.0 6.9 6.6 0.1 3.2 3 0 0 3 3 3 0 Centrosome microtubule-binding domain of Cep57 SlyX PF04102.7 gi|282162807|ref|YP_003355192.1| - 3.2 8.1 6.0 8.7 6.7 1.3 2.8 1 1 1 2 2 2 0 SlyX DUF972 PF06156.8 gi|282162807|ref|YP_003355192.1| - 4.5 7.6 6.1 38 4.6 0.3 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF972) AIRC PF00731.15 gi|282162808|ref|YP_003355193.1| - 7e-23 80.5 7.1 7.5e-23 80.4 4.3 1.4 2 0 0 2 2 2 1 AIR carboxylase DUF374 PF04028.8 gi|282162808|ref|YP_003355193.1| - 0.06 12.5 2.8 5.1 6.3 0.0 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF374) polyprenyl_synt PF00348.12 gi|282162809|ref|YP_003355194.1| - 1.4e-54 184.7 0.1 1.7e-54 184.4 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase CbiA PF01656.18 gi|282162810|ref|YP_003355195.1| - 1.2e-31 109.6 0.0 1.5e-31 109.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|282162810|ref|YP_003355195.1| - 5.1e-16 58.9 0.0 8.2e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|282162810|ref|YP_003355195.1| - 5.9e-12 45.2 0.1 2.3e-11 43.2 0.1 1.8 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|282162810|ref|YP_003355195.1| - 2.1e-07 30.3 0.1 4.2e-06 26.1 0.0 2.1 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|282162810|ref|YP_003355195.1| - 2.5e-07 30.0 0.0 4.5e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.4 gi|282162810|ref|YP_003355195.1| - 1.4e-06 28.0 0.0 2.5e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_26 PF13500.1 gi|282162810|ref|YP_003355195.1| - 7.7e-06 25.6 0.0 3.4e-05 23.5 0.0 2.0 1 1 0 2 2 2 1 AAA domain YhjQ PF06564.7 gi|282162810|ref|YP_003355195.1| - 0.00014 21.3 0.0 0.00039 19.8 0.0 1.7 1 1 0 1 1 1 1 YhjQ protein GTP_EFTU PF00009.22 gi|282162810|ref|YP_003355195.1| - 0.00017 21.0 0.1 0.00055 19.4 0.1 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_25 PF13481.1 gi|282162810|ref|YP_003355195.1| - 0.00038 19.9 0.0 0.00068 19.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|282162810|ref|YP_003355195.1| - 0.0032 16.5 0.4 0.022 13.8 0.1 2.0 2 0 0 2 2 2 1 VirC1 protein AAA_30 PF13604.1 gi|282162810|ref|YP_003355195.1| - 0.0038 16.8 0.3 0.0069 15.9 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|282162810|ref|YP_003355195.1| - 0.0051 16.5 0.1 0.29 10.9 0.2 2.9 3 0 0 3 3 3 1 Part of AAA domain FTHFS PF01268.14 gi|282162810|ref|YP_003355195.1| - 0.0065 14.5 0.3 0.0088 14.0 0.2 1.1 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase AAA_10 PF12846.2 gi|282162810|ref|YP_003355195.1| - 0.019 14.4 0.1 0.04 13.3 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain APS_kinase PF01583.15 gi|282162810|ref|YP_003355195.1| - 0.02 14.5 0.1 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase IstB_IS21 PF01695.12 gi|282162810|ref|YP_003355195.1| - 0.036 13.4 0.1 0.058 12.7 0.1 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein PhoH PF02562.11 gi|282162810|ref|YP_003355195.1| - 0.047 12.9 0.3 0.073 12.2 0.2 1.3 1 0 0 1 1 1 0 PhoH-like protein DUF72 PF01904.13 gi|282162811|ref|YP_003355196.1| - 3.2e-55 187.4 0.1 3.6e-55 187.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF385 PF04075.9 gi|282162811|ref|YP_003355196.1| - 0.068 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF385) TatC PF00902.13 gi|282162812|ref|YP_003355197.1| - 1.8e-44 151.7 20.9 2.5e-44 151.2 14.5 1.2 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) NADH-u_ox-rdase PF10785.4 gi|282162812|ref|YP_003355197.1| - 0.021 15.0 2.9 0.19 11.9 0.1 3.0 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Microcin PF03526.8 gi|282162812|ref|YP_003355197.1| - 0.37 10.4 0.1 0.37 10.4 0.1 2.2 2 0 0 2 2 2 0 Colicin E1 (microcin) immunity protein Glycos_transf_1 PF00534.15 gi|282162813|ref|YP_003355198.1| - 9e-48 161.9 0.0 1.4e-47 161.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282162813|ref|YP_003355198.1| - 1.8e-36 125.4 0.0 2.6e-36 124.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|282162813|ref|YP_003355198.1| - 2.2e-27 96.1 0.2 4.3e-27 95.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|282162813|ref|YP_003355198.1| - 2.8e-23 82.5 0.0 5.6e-23 81.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|282162813|ref|YP_003355198.1| - 3.2e-14 52.9 0.0 9.1e-14 51.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|282162813|ref|YP_003355198.1| - 1.7e-07 31.1 0.0 2.6e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|282162813|ref|YP_003355198.1| - 0.00012 21.7 0.3 0.019 14.4 0.0 2.5 1 1 1 2 2 2 2 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|282162814|ref|YP_003355199.1| - 4.9e-46 156.2 0.0 1.1e-45 155.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282162814|ref|YP_003355199.1| - 1.8e-41 141.8 0.0 2.5e-41 141.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|282162814|ref|YP_003355199.1| - 3.1e-22 79.4 0.0 8.3e-22 78.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|282162814|ref|YP_003355199.1| - 1.6e-20 73.6 0.0 2.8e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|282162814|ref|YP_003355199.1| - 9.2e-09 35.2 0.0 1.5e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|282162814|ref|YP_003355199.1| - 1.7e-08 34.6 0.0 3e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|282162814|ref|YP_003355199.1| - 0.0065 15.9 0.1 0.25 10.8 0.1 2.7 1 1 0 1 1 1 1 Starch synthase catalytic domain Acetyltransf_1 PF00583.19 gi|282162815|ref|YP_003355200.1| - 5.2e-15 55.2 0.1 1.2e-14 54.1 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|282162815|ref|YP_003355200.1| - 1.4e-08 34.8 0.1 3.3e-08 33.6 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|282162815|ref|YP_003355200.1| - 9.8e-06 25.2 0.0 2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|282162815|ref|YP_003355200.1| - 1.5e-05 25.0 0.0 2.9e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|282162815|ref|YP_003355200.1| - 2.9e-05 24.0 0.6 0.0034 17.3 0.1 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|282162815|ref|YP_003355200.1| - 0.00022 21.0 0.0 0.00073 19.3 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|282162815|ref|YP_003355200.1| - 0.065 13.1 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ERCC4 PF02732.10 gi|282162816|ref|YP_003355201.1| - 1.8e-26 92.6 0.0 4.2e-26 91.4 0.0 1.7 1 0 0 1 1 1 1 ERCC4 domain DEAD PF00270.24 gi|282162816|ref|YP_003355201.1| - 7e-22 77.6 0.0 1.6e-21 76.4 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|282162816|ref|YP_003355201.1| - 1.4e-19 69.7 0.0 1e-18 66.9 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|282162816|ref|YP_003355201.1| - 1.1e-14 54.6 0.0 2.4e-14 53.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|282162816|ref|YP_003355201.1| - 4.4e-11 42.4 0.0 1.3e-10 40.9 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|282162816|ref|YP_003355201.1| - 5.7e-10 39.2 0.2 3.1e-08 33.6 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|282162816|ref|YP_003355201.1| - 2.6e-05 23.6 0.3 0.00015 21.2 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif SNF2_N PF00176.18 gi|282162816|ref|YP_003355201.1| - 0.0014 17.4 0.0 0.0024 16.7 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF2075 PF09848.4 gi|282162816|ref|YP_003355201.1| - 0.0094 14.9 0.0 0.018 13.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) SecA_DEAD PF07517.9 gi|282162816|ref|YP_003355201.1| - 0.026 13.7 0.0 0.075 12.3 0.0 1.7 1 0 0 1 1 1 0 SecA DEAD-like domain 5_3_exonuc PF01367.15 gi|282162816|ref|YP_003355201.1| - 0.028 14.6 0.1 0.41 10.9 0.0 2.8 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold AAA_11 PF13086.1 gi|282162816|ref|YP_003355201.1| - 0.086 12.3 0.2 3 7.3 0.0 2.8 2 1 1 3 3 3 0 AAA domain tRNA-synt_2b PF00587.20 gi|282162818|ref|YP_003355203.1| - 1e-55 187.9 0.0 1.5e-55 187.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|282162818|ref|YP_003355203.1| - 5.2e-21 74.3 0.0 1.2e-20 73.2 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain Zn-ribbon_8 PF09723.5 gi|282162818|ref|YP_003355203.1| - 0.012 15.5 0.3 0.72 9.8 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Thioredoxin_3 PF13192.1 gi|282162820|ref|YP_003355205.1| - 0.012 15.4 0.3 0.057 13.2 0.2 2.1 1 1 0 1 1 1 0 Thioredoxin domain SpoU_methylas_C PF12105.3 gi|282162820|ref|YP_003355205.1| - 0.098 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 SpoU, rRNA methylase, C-terminal RseC_MucC PF04246.7 gi|282162820|ref|YP_003355205.1| - 0.12 11.9 0.1 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Lactamase_B_2 PF12706.2 gi|282162821|ref|YP_003355206.1| - 5.1e-08 32.6 0.2 2.1e-06 27.4 0.1 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|282162821|ref|YP_003355206.1| - 0.00036 20.2 1.1 0.0012 18.5 0.2 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|282162821|ref|YP_003355206.1| - 0.0065 16.2 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|282162821|ref|YP_003355206.1| - 0.021 14.5 0.0 0.064 12.9 0.0 1.7 2 0 0 2 2 2 0 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|282162821|ref|YP_003355206.1| - 0.6 8.9 2.1 1.2 8.0 0.7 1.8 1 1 0 2 2 2 0 cAMP phosphodiesterases class-II CarboxypepD_reg PF13620.1 gi|282162822|ref|YP_003355207.1| - 2.4e-08 33.9 5.9 1.9e-05 24.6 0.8 2.4 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|282162822|ref|YP_003355207.1| - 9.8e-08 31.6 6.2 5.6e-05 22.8 0.9 2.7 2 1 0 2 2 2 2 Cna protein B-type domain Big_1 PF02369.11 gi|282162822|ref|YP_003355207.1| - 9e-05 22.3 0.6 9e-05 22.3 0.4 2.4 2 1 0 2 2 2 1 Bacterial Ig-like domain (group 1) HTH_20 PF12840.2 gi|282162823|ref|YP_003355208.1| - 4e-09 36.1 0.0 7e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|282162823|ref|YP_003355208.1| - 3.4e-06 26.6 0.1 5.8e-06 25.9 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|282162823|ref|YP_003355208.1| - 3e-05 23.3 0.0 5.1e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|282162823|ref|YP_003355208.1| - 4.3e-05 23.0 0.0 7.6e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|282162823|ref|YP_003355208.1| - 9.2e-05 22.0 0.0 0.00019 21.0 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF742 PF05331.6 gi|282162823|ref|YP_003355208.1| - 0.00045 19.8 0.0 0.00089 18.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_IclR PF09339.5 gi|282162823|ref|YP_003355208.1| - 0.00053 19.5 0.0 0.0016 17.9 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|282162823|ref|YP_003355208.1| - 0.0059 16.9 0.0 0.01 16.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|282162823|ref|YP_003355208.1| - 0.0075 15.7 0.1 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit Fe_dep_repress PF01325.14 gi|282162823|ref|YP_003355208.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|282162823|ref|YP_003355208.1| - 0.098 12.7 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Ftsk_gamma PF09397.5 gi|282162823|ref|YP_003355208.1| - 0.13 11.9 0.1 0.32 10.7 0.1 1.7 1 0 0 1 1 1 0 Ftsk gamma domain TrkA_N PF02254.13 gi|282162824|ref|YP_003355209.1| - 1.1e-21 76.9 0.0 4.6e-21 74.9 0.0 2.0 2 0 0 2 2 2 1 TrkA-N domain DHH PF01368.15 gi|282162824|ref|YP_003355209.1| - 5.8e-15 55.1 0.0 1.1e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|282162824|ref|YP_003355209.1| - 7.8e-10 38.3 0.3 1.9e-09 37.0 0.2 1.7 1 0 0 1 1 1 1 DHHA1 domain ApbA PF02558.11 gi|282162824|ref|YP_003355209.1| - 0.002 17.5 0.0 0.0036 16.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|282162824|ref|YP_003355209.1| - 0.012 15.3 0.0 0.028 14.1 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|282162824|ref|YP_003355209.1| - 0.016 15.6 0.0 0.04 14.3 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|282162824|ref|YP_003355209.1| - 0.024 14.0 0.0 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.19 gi|282162824|ref|YP_003355209.1| - 0.026 13.4 0.0 0.06 12.2 0.0 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase Methyltransf_26 PF13659.1 gi|282162824|ref|YP_003355209.1| - 0.065 13.2 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Saccharop_dh PF03435.13 gi|282162824|ref|YP_003355209.1| - 0.12 11.3 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Usp PF00582.21 gi|282162825|ref|YP_003355210.1| - 1.5e-24 86.7 0.2 1.7e-24 86.5 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.13 gi|282162825|ref|YP_003355210.1| - 0.014 15.1 0.0 0.017 14.8 0.0 1.1 1 0 0 1 1 1 0 DNA photolyase DUF1453 PF07301.6 gi|282162826|ref|YP_003355211.1| - 0.02 14.7 0.5 0.025 14.4 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1453) DIM PF08194.7 gi|282162826|ref|YP_003355211.1| - 4.8 7.2 6.6 1.2 9.1 0.5 2.3 2 0 0 2 2 2 0 DIM protein DUF347 PF03988.7 gi|282162826|ref|YP_003355211.1| - 5.1 7.0 9.3 4.6 7.1 2.3 2.2 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) CxxCxxCC PF03692.10 gi|282162827|ref|YP_003355212.1| - 0.00014 22.3 7.0 0.0011 19.3 4.9 2.2 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain zf-ribbon_3 PF13248.1 gi|282162828|ref|YP_003355213.1| - 1.5e-11 43.0 23.8 4.3e-06 25.7 5.0 3.6 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.2 gi|282162828|ref|YP_003355213.1| - 1.4e-09 37.6 21.6 2e-09 37.1 8.4 3.4 3 1 0 3 3 3 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|282162828|ref|YP_003355213.1| - 7.2e-08 31.6 29.8 5.9e-06 25.5 1.4 4.7 4 1 1 5 5 5 3 zinc-ribbon domain UPF0547 PF10571.4 gi|282162828|ref|YP_003355213.1| - 0.0015 18.1 2.5 0.0015 18.1 1.7 4.9 5 0 0 5 5 5 1 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|282162828|ref|YP_003355213.1| - 0.35 10.5 0.2 0.35 10.5 0.2 5.5 5 1 1 6 6 6 0 Nudix N-terminal zf-B_box PF00643.19 gi|282162828|ref|YP_003355213.1| - 0.38 10.6 15.3 1.4 8.9 0.1 4.2 4 0 0 4 4 4 0 B-box zinc finger PolC_DP2 PF03833.8 gi|282162828|ref|YP_003355213.1| - 0.39 8.3 10.1 0.046 11.4 3.8 1.7 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Ribosomal_L32p PF01783.18 gi|282162828|ref|YP_003355213.1| - 0.39 10.9 12.0 3 8.0 0.4 3.6 2 1 1 3 3 3 0 Ribosomal L32p protein family zinc-ribbons_6 PF07191.7 gi|282162828|ref|YP_003355213.1| - 2.6 7.9 15.9 3 7.7 3.9 3.8 3 1 0 3 3 3 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|282162828|ref|YP_003355213.1| - 4.8 6.9 20.5 3.3 7.4 1.2 4.6 4 1 1 5 5 5 0 Zinc finger, C3HC4 type (RING finger) Mut7-C PF01927.11 gi|282162828|ref|YP_003355213.1| - 6.6 6.6 7.6 14 5.6 0.6 2.6 1 1 1 2 2 2 0 Mut7-C RNAse domain OrfB_Zn_ribbon PF07282.6 gi|282162828|ref|YP_003355213.1| - 6.8 6.4 22.3 3.6 7.3 0.4 4.2 3 1 0 3 3 3 0 Putative transposase DNA-binding domain DUF555 PF04475.7 gi|282162828|ref|YP_003355213.1| - 9 6.3 6.0 44 4.1 0.1 3.5 2 1 2 4 4 4 0 Protein of unknown function (DUF555) zf-ribbon_3 PF13248.1 gi|282162829|ref|YP_003355214.1| - 2.3e-18 64.7 38.1 1.1e-06 27.6 2.3 4.6 4 1 0 4 4 4 4 zinc-ribbon domain DZR PF12773.2 gi|282162829|ref|YP_003355214.1| - 1.9e-16 59.5 28.5 1.7e-07 30.9 2.4 3.2 2 1 1 3 3 3 3 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|282162829|ref|YP_003355214.1| - 1.2e-13 50.0 36.2 1.9e-06 27.1 1.8 5.5 3 1 3 6 6 5 4 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|282162829|ref|YP_003355214.1| - 1.7e-07 30.8 30.3 0.0073 16.0 1.3 5.0 3 1 1 4 4 4 3 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|282162829|ref|YP_003355214.1| - 2.4e-06 27.1 11.1 0.00014 21.4 0.9 5.2 4 1 1 5 5 5 2 Uncharacterised protein family UPF0547 zf-HIT PF04438.11 gi|282162829|ref|YP_003355214.1| - 0.0019 17.8 2.3 0.0019 17.8 1.6 5.6 3 1 2 5 5 5 1 HIT zinc finger DUF2089 PF09862.4 gi|282162829|ref|YP_003355214.1| - 0.0086 15.8 0.0 0.0086 15.8 0.0 2.3 3 0 0 3 3 3 1 Protein of unknown function (DUF2089) PolC_DP2 PF03833.8 gi|282162829|ref|YP_003355214.1| - 0.015 13.0 19.0 0.056 11.1 5.0 2.0 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Cys_rich_CPXG PF14255.1 gi|282162829|ref|YP_003355214.1| - 0.026 14.3 4.1 0.026 14.3 2.8 5.4 5 1 1 6 6 6 0 Cysteine-rich CPXCG tRNA-synt_1g PF09334.6 gi|282162829|ref|YP_003355214.1| - 0.07 11.7 11.8 0.11 11.0 1.8 2.8 1 1 2 3 3 3 0 tRNA synthetases class I (M) zf-MYND PF01753.13 gi|282162829|ref|YP_003355214.1| - 0.1 12.4 24.4 1.9 8.4 0.3 4.8 2 2 1 3 3 3 0 MYND finger DUF1272 PF06906.6 gi|282162829|ref|YP_003355214.1| - 0.13 12.1 27.1 0.59 10.0 4.6 5.1 2 1 2 4 4 4 0 Protein of unknown function (DUF1272) zf-C3HC4_3 PF13920.1 gi|282162829|ref|YP_003355214.1| - 0.24 11.1 32.6 0.79 9.4 2.1 4.9 2 2 3 5 5 5 0 Zinc finger, C3HC4 type (RING finger) zinc-ribbons_6 PF07191.7 gi|282162829|ref|YP_003355214.1| - 0.35 10.6 24.7 0.44 10.3 8.8 3.6 1 1 2 3 3 3 0 zinc-ribbons A2L_zn_ribbon PF08792.5 gi|282162829|ref|YP_003355214.1| - 0.52 9.8 31.4 0.46 10.0 0.6 6.8 5 2 1 6 6 6 0 A2L zinc ribbon domain zf-AN1 PF01428.11 gi|282162829|ref|YP_003355214.1| - 2.7 7.9 27.1 1.8 8.4 0.6 5.0 2 2 3 6 6 6 0 AN1-like Zinc finger DUF35_N PF12172.3 gi|282162829|ref|YP_003355214.1| - 2.7 8.0 39.6 0.15 12.0 3.1 5.3 4 1 1 5 5 5 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L28 PF00830.14 gi|282162829|ref|YP_003355214.1| - 9.2 6.1 7.8 10 6.0 0.6 3.2 3 1 0 3 3 3 0 Ribosomal L28 family SecD_SecF PF02355.11 gi|282162831|ref|YP_003355216.1| - 4e-15 55.5 10.6 4e-15 55.5 7.4 1.6 2 0 0 2 2 2 1 Protein export membrane protein MMPL PF03176.10 gi|282162831|ref|YP_003355216.1| - 0.00017 20.4 11.6 0.00027 19.7 8.1 1.3 1 0 0 1 1 1 1 MMPL family TMEMspv1-c74-12 PF11044.3 gi|282162831|ref|YP_003355216.1| - 0.0084 15.6 0.6 0.0084 15.6 0.4 3.3 3 0 0 3 3 3 1 Plectrovirus spv1-c74 ORF 12 transmembrane protein Sec_GG PF07549.9 gi|282162831|ref|YP_003355216.1| - 0.018 14.2 0.3 0.054 12.7 0.2 1.8 1 0 0 1 1 1 0 SecD/SecF GG Motif Sterol-sensing PF12349.3 gi|282162831|ref|YP_003355216.1| - 0.11 11.8 6.5 0.13 11.7 3.8 1.6 1 1 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation ETRAMP PF09716.5 gi|282162831|ref|YP_003355216.1| - 1 9.3 5.9 4 7.4 0.0 3.2 3 0 0 3 3 3 0 Malarial early transcribed membrane protein (ETRAMP) TraA PF05513.6 gi|282162831|ref|YP_003355216.1| - 3.4 7.8 11.3 0.36 11.0 1.0 2.4 2 0 0 2 2 2 0 TraA SecD_SecF PF02355.11 gi|282162832|ref|YP_003355217.1| - 4e-34 117.4 16.2 6.4e-34 116.7 11.2 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|282162832|ref|YP_003355217.1| - 6.4e-09 34.5 0.1 1.5e-08 33.3 0.1 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.10 gi|282162832|ref|YP_003355217.1| - 0.0021 16.8 16.5 0.0021 16.8 11.4 1.4 2 0 0 2 2 2 1 MMPL family ACR_tran PF00873.14 gi|282162832|ref|YP_003355217.1| - 0.047 11.1 7.0 0.059 10.7 4.8 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family Amnionless PF14828.1 gi|282162832|ref|YP_003355217.1| - 0.079 11.4 0.1 0.15 10.5 0.1 1.4 1 0 0 1 1 1 0 Amnionless DUF912 PF06024.7 gi|282162832|ref|YP_003355217.1| - 0.085 12.9 0.0 1.7 8.7 0.0 2.6 3 0 0 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Patched PF02460.13 gi|282162832|ref|YP_003355217.1| - 1.6 6.5 17.1 2.2 6.0 11.9 1.1 1 0 0 1 1 1 0 Patched family DUF362 PF04015.7 gi|282162834|ref|YP_003355219.1| - 9.5e-44 149.3 0.0 1.4e-43 148.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_6 PF12837.2 gi|282162834|ref|YP_003355219.1| - 4.8e-08 32.5 11.7 0.00045 19.9 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|282162834|ref|YP_003355219.1| - 1.3e-07 31.5 4.1 0.00035 20.5 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282162834|ref|YP_003355219.1| - 5.6e-07 28.8 15.8 6.7e-05 22.3 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|282162834|ref|YP_003355219.1| - 6.8e-07 29.4 11.7 2.3e-06 27.7 8.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282162834|ref|YP_003355219.1| - 7.1e-07 28.9 11.4 1.7e-06 27.6 8.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282162834|ref|YP_003355219.1| - 1.1e-06 28.9 11.4 0.00052 20.3 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282162834|ref|YP_003355219.1| - 5e-06 27.1 10.1 0.0016 19.1 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|282162834|ref|YP_003355219.1| - 5.3e-06 26.0 13.8 0.00023 20.9 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|282162834|ref|YP_003355219.1| - 0.00015 22.0 16.6 0.014 15.9 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|282162834|ref|YP_003355219.1| - 0.00028 20.9 12.7 0.0044 17.2 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|282162834|ref|YP_003355219.1| - 0.00087 19.6 13.5 0.02 15.2 1.7 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282162834|ref|YP_003355219.1| - 0.0017 18.6 11.2 0.016 15.5 1.3 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282162834|ref|YP_003355219.1| - 0.0088 15.8 14.4 0.034 13.9 2.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282162834|ref|YP_003355219.1| - 0.23 11.9 13.1 1.7 9.0 2.5 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|282162834|ref|YP_003355219.1| - 1.3 9.6 11.7 4.5 7.8 1.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain CTP_transf_1 PF01148.15 gi|282162835|ref|YP_003355220.1| - 2.1e-10 40.6 13.9 2.1e-10 40.6 9.6 2.5 2 1 0 2 2 2 1 Cytidylyltransferase family Thymidylate_kin PF02223.12 gi|282162836|ref|YP_003355221.1| - 5.1e-22 78.1 0.0 5.8e-22 77.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|282162836|ref|YP_003355221.1| - 1.2e-05 25.6 0.0 3.6e-05 24.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain dNK PF01712.14 gi|282162836|ref|YP_003355221.1| - 6.9e-05 22.7 0.0 9.4e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_33 PF13671.1 gi|282162836|ref|YP_003355221.1| - 0.012 15.4 0.1 0.14 12.0 0.0 2.1 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|282162836|ref|YP_003355221.1| - 0.045 13.1 0.0 0.061 12.7 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.15 gi|282162836|ref|YP_003355221.1| - 0.064 12.9 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase KTI12 PF08433.5 gi|282162836|ref|YP_003355221.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Shikimate_dh_N PF08501.6 gi|282162837|ref|YP_003355222.1| - 1.8e-27 95.2 0.0 6.3e-27 93.4 0.0 1.9 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|282162837|ref|YP_003355222.1| - 1.5e-14 54.2 0.1 2.4e-14 53.6 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.14 gi|282162837|ref|YP_003355222.1| - 9.7e-05 21.4 0.5 0.0035 16.4 0.0 2.2 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_7 PF13241.1 gi|282162837|ref|YP_003355222.1| - 0.00088 19.5 0.2 0.0013 18.9 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|282162837|ref|YP_003355222.1| - 0.0069 16.4 0.7 0.011 15.7 0.5 1.4 1 1 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|282162837|ref|YP_003355222.1| - 0.0083 15.1 0.2 0.011 14.6 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|282162837|ref|YP_003355222.1| - 0.0092 16.3 0.2 0.02 15.3 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|282162837|ref|YP_003355222.1| - 0.014 14.5 0.1 0.03 13.4 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.20 gi|282162837|ref|YP_003355222.1| - 0.022 14.7 2.1 0.043 13.7 1.4 1.5 1 0 0 1 1 1 0 short chain dehydrogenase ApbA PF02558.11 gi|282162837|ref|YP_003355222.1| - 0.077 12.4 0.2 0.17 11.3 0.1 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PDH PF02153.12 gi|282162838|ref|YP_003355223.1| - 5.7e-35 120.4 0.0 8.9e-35 119.7 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.10 gi|282162838|ref|YP_003355223.1| - 0.00011 22.1 0.0 0.0002 21.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|282162838|ref|YP_003355223.1| - 0.00021 21.6 0.0 0.00045 20.5 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|282162838|ref|YP_003355223.1| - 0.014 14.7 0.0 0.025 13.9 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NmrA PF05368.8 gi|282162838|ref|YP_003355223.1| - 0.2 10.9 0.0 2.2 7.4 0.0 2.0 2 0 0 2 2 2 0 NmrA-like family CM_2 PF01817.16 gi|282162839|ref|YP_003355224.1| - 7.9e-18 64.3 3.0 8.9e-18 64.1 2.1 1.0 1 0 0 1 1 1 1 Chorismate mutase type II INTS5_C PF14838.1 gi|282162839|ref|YP_003355224.1| - 0.049 11.9 0.2 0.048 11.9 0.1 1.0 1 0 0 1 1 1 0 Integrator complex subunit 5 C-terminus GHMP_kinases_N PF00288.21 gi|282162840|ref|YP_003355225.1| - 1e-11 44.7 0.4 2.3e-11 43.5 0.3 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|282162840|ref|YP_003355225.1| - 0.00027 21.0 0.1 0.001 19.2 0.0 2.0 1 1 0 1 1 1 1 GHMP kinases C terminal GalP_UDP_transf PF01087.17 gi|282162841|ref|YP_003355226.1| - 1.2e-13 51.5 0.0 4.2e-10 39.9 0.0 2.4 2 0 0 2 2 2 2 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|282162841|ref|YP_003355226.1| - 4.4e-06 26.3 0.0 6.9e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain HIT PF01230.18 gi|282162841|ref|YP_003355226.1| - 0.018 15.5 0.0 0.37 11.3 0.0 2.4 2 1 0 2 2 2 0 HIT domain Glycos_transf_1 PF00534.15 gi|282162842|ref|YP_003355227.1| - 4.9e-36 123.7 0.0 6.8e-36 123.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282162842|ref|YP_003355227.1| - 1.4e-21 77.2 0.0 2.6e-21 76.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|282162842|ref|YP_003355227.1| - 1.1e-14 54.7 0.0 2.1e-14 53.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|282162842|ref|YP_003355227.1| - 4.8e-13 49.1 0.1 2.7e-11 43.4 0.0 2.6 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_transf_4 PF13439.1 gi|282162842|ref|YP_003355227.1| - 1.8e-11 44.0 0.0 3.7e-07 30.0 0.0 2.4 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|282162842|ref|YP_003355227.1| - 3.9e-08 33.4 0.0 7e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|282162842|ref|YP_003355227.1| - 0.0034 15.9 0.0 0.02 13.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase family 20 RCC1_2 PF13540.1 gi|282162842|ref|YP_003355227.1| - 0.089 12.4 0.4 9.6 5.9 0.0 2.6 2 0 0 2 2 2 0 Regulator of chromosome condensation (RCC1) repeat Glycogen_syn PF05693.8 gi|282162842|ref|YP_003355227.1| - 0.097 10.8 0.0 0.33 9.1 0.0 1.7 2 0 0 2 2 2 0 Glycogen synthase DJ-1_PfpI PF01965.19 gi|282162844|ref|YP_003355229.1| - 7.9e-29 100.0 0.0 9.8e-29 99.7 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|282162844|ref|YP_003355229.1| - 2.9e-12 46.1 0.0 3.4e-12 45.9 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase AP_endonuc_2 PF01261.19 gi|282162845|ref|YP_003355230.1| - 3.2e-28 98.4 0.6 3.9e-28 98.2 0.4 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.8 gi|282162845|ref|YP_003355230.1| - 0.0017 16.9 0.0 0.003 16.1 0.0 1.3 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) DUF2393 PF09624.5 gi|282162846|ref|YP_003355231.1| - 0.00099 18.6 0.3 0.0079 15.7 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2393) Nab2 PF11517.3 gi|282162846|ref|YP_003355231.1| - 0.046 13.8 0.1 0.085 12.9 0.1 1.4 1 0 0 1 1 1 0 Nuclear abundant poly(A) RNA-bind protein 2 (Nab2) KaiC PF06745.8 gi|282162847|ref|YP_003355232.1| - 2.4e-27 95.5 0.0 2.8e-27 95.3 0.0 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|282162847|ref|YP_003355232.1| - 6.9e-13 48.1 0.1 1.5e-08 33.9 0.0 2.0 1 1 0 2 2 2 2 PAXNEB protein GvpD PF07088.6 gi|282162847|ref|YP_003355232.1| - 0.024 12.9 0.1 4.1 5.6 0.1 2.3 2 1 0 2 2 2 0 GvpD gas vesicle protein TPR_11 PF13414.1 gi|282162848|ref|YP_003355233.1| - 1.5e-52 175.1 22.6 2.3e-13 49.5 0.3 5.4 3 1 1 5 5 5 5 TPR repeat TPR_17 PF13431.1 gi|282162848|ref|YP_003355233.1| - 8e-43 141.0 7.8 1.9e-05 24.5 0.0 7.6 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282162848|ref|YP_003355233.1| - 2e-40 133.4 25.3 9.2e-07 28.3 0.2 9.9 9 1 1 10 10 10 8 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282162848|ref|YP_003355233.1| - 4.8e-39 130.4 16.7 1.7e-07 30.5 0.1 10.1 10 0 0 10 10 10 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282162848|ref|YP_003355233.1| - 1.3e-32 111.7 33.3 1.4e-11 44.7 1.5 6.7 3 3 4 7 7 7 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282162848|ref|YP_003355233.1| - 3.7e-28 95.4 24.6 1.8e-05 24.9 0.0 8.7 2 2 7 9 9 9 7 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282162848|ref|YP_003355233.1| - 3.2e-24 84.6 20.9 1.1e-06 28.4 1.9 5.5 2 2 3 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282162848|ref|YP_003355233.1| - 4e-23 79.4 8.3 0.0025 17.4 0.0 9.7 6 4 3 9 9 9 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282162848|ref|YP_003355233.1| - 2.4e-22 79.0 13.6 5.3e-08 33.0 0.1 6.3 2 2 4 6 6 6 6 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282162848|ref|YP_003355233.1| - 3.1e-15 56.0 8.4 2.1e-06 27.7 0.0 4.0 3 2 2 5 5 4 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282162848|ref|YP_003355233.1| - 2.7e-12 46.2 10.5 0.036 14.5 0.1 7.8 8 1 0 8 8 8 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282162848|ref|YP_003355233.1| - 3.7e-11 41.9 11.9 0.45 10.4 0.0 8.4 8 1 0 8 8 8 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282162848|ref|YP_003355233.1| - 1e-09 38.0 18.3 0.0014 18.4 0.1 5.3 3 2 4 7 7 6 5 Tetratricopeptide repeat BTAD PF03704.12 gi|282162848|ref|YP_003355233.1| - 6.2e-06 26.5 10.3 0.19 12.0 0.1 4.3 1 1 3 4 4 4 2 Bacterial transcriptional activator domain RPN7 PF10602.4 gi|282162848|ref|YP_003355233.1| - 0.0011 18.4 0.4 1.2 8.5 0.0 3.6 2 1 2 4 4 4 1 26S proteasome subunit RPN7 MIT PF04212.13 gi|282162848|ref|YP_003355233.1| - 0.012 15.4 3.7 2.8 7.8 0.0 4.8 6 1 1 7 7 6 0 MIT (microtubule interacting and transport) domain DUF627 PF04781.7 gi|282162848|ref|YP_003355233.1| - 0.025 14.2 0.1 15 5.2 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF627) TPR_21 PF09976.4 gi|282162848|ref|YP_003355233.1| - 0.04 13.8 1.0 0.04 13.8 0.7 3.6 5 0 0 5 5 5 0 Tetratricopeptide repeat Exonuc_VII_S PF02609.11 gi|282162848|ref|YP_003355233.1| - 0.053 13.3 0.0 3.8 7.3 0.0 3.4 3 0 0 3 3 3 0 Exonuclease VII small subunit TPR_4 PF07721.9 gi|282162848|ref|YP_003355233.1| - 0.11 12.9 25.5 0.56 10.8 0.1 7.8 8 0 0 8 8 7 0 Tetratricopeptide repeat Lactamase_B_2 PF12706.2 gi|282162849|ref|YP_003355234.1| - 5.1e-20 71.8 0.0 9.7e-20 70.9 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|282162849|ref|YP_003355234.1| - 8.6e-09 35.3 5.6 8.1e-08 32.1 3.9 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|282162849|ref|YP_003355234.1| - 0.01 15.5 0.0 0.026 14.2 0.0 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Tic20 PF09685.5 gi|282162850|ref|YP_003355235.1| - 0.022 14.7 5.3 0.027 14.4 3.7 1.2 1 0 0 1 1 1 0 Tic20-like protein DUF4084 PF13321.1 gi|282162850|ref|YP_003355235.1| - 0.028 13.6 10.8 0.025 13.8 5.8 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4084) ABC2_membrane_5 PF13346.1 gi|282162850|ref|YP_003355235.1| - 0.041 13.1 13.9 0.045 13.0 9.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein MFS_1 PF07690.11 gi|282162850|ref|YP_003355235.1| - 0.14 10.8 10.8 0.15 10.7 7.5 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily ABC2_membrane_4 PF12730.2 gi|282162850|ref|YP_003355235.1| - 0.32 10.1 14.7 0.38 9.8 10.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein MARVEL PF01284.18 gi|282162850|ref|YP_003355235.1| - 0.39 10.5 8.2 0.51 10.1 5.7 1.2 1 0 0 1 1 1 0 Membrane-associating domain DUF1440 PF07274.7 gi|282162850|ref|YP_003355235.1| - 0.48 10.4 2.1 0.45 10.5 0.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1440) 2TM PF13239.1 gi|282162850|ref|YP_003355235.1| - 1 9.4 7.5 1.4 9.0 0.7 2.1 1 1 1 2 2 2 0 2TM domain TRAP-gamma PF07074.7 gi|282162850|ref|YP_003355235.1| - 2 7.9 6.5 0.23 10.9 1.4 1.7 2 0 0 2 2 2 0 Translocon-associated protein, gamma subunit (TRAP-gamma) DUF805 PF05656.9 gi|282162850|ref|YP_003355235.1| - 2.4 8.0 10.2 0.37 10.6 3.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF805) O-antigen_lig PF13425.1 gi|282162850|ref|YP_003355235.1| - 4.6 7.2 15.7 0.57 10.1 3.5 2.1 1 1 1 2 2 2 0 O-antigen ligase like membrane protein Flavodoxin_3 PF12641.2 gi|282162851|ref|YP_003355236.1| - 2.5e-10 39.9 0.0 4.9e-10 39.0 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin domain Fer4_10 PF13237.1 gi|282162851|ref|YP_003355236.1| - 2.5e-08 33.5 9.6 4.3e-08 32.8 6.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282162851|ref|YP_003355236.1| - 3.9e-08 32.5 5.6 0.00016 21.1 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Flavodoxin_1 PF00258.20 gi|282162851|ref|YP_003355236.1| - 8.5e-08 32.3 0.0 1.4e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_4 PF12682.2 gi|282162851|ref|YP_003355236.1| - 1.7e-07 30.7 0.0 0.001 18.4 0.0 2.3 1 1 1 2 2 2 2 Flavodoxin Fer4_7 PF12838.2 gi|282162851|ref|YP_003355236.1| - 2.9e-07 30.7 2.3 0.0041 17.4 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282162851|ref|YP_003355236.1| - 4.7e-06 26.2 10.6 0.011 15.5 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Flavodoxin_5 PF12724.2 gi|282162851|ref|YP_003355236.1| - 5.4e-06 26.4 0.0 8.1e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Fer4_9 PF13187.1 gi|282162851|ref|YP_003355236.1| - 9.2e-06 25.8 9.7 0.00022 21.4 6.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282162851|ref|YP_003355236.1| - 0.0009 19.3 10.9 0.019 15.2 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282162851|ref|YP_003355236.1| - 0.0013 18.4 9.8 0.2 11.6 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282162851|ref|YP_003355236.1| - 0.0018 18.9 8.7 0.34 11.6 0.4 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|282162851|ref|YP_003355236.1| - 0.002 18.0 8.9 0.057 13.4 0.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282162851|ref|YP_003355236.1| - 0.0046 17.2 4.6 0.23 11.8 0.1 2.7 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282162851|ref|YP_003355236.1| - 0.008 16.5 9.2 0.29 11.6 0.3 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282162851|ref|YP_003355236.1| - 0.012 15.3 8.8 0.026 14.3 6.1 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|282162851|ref|YP_003355236.1| - 0.013 15.3 4.3 0.03 14.1 3.0 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|282162851|ref|YP_003355236.1| - 0.22 12.1 13.2 0.51 11.0 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain NosD PF05048.8 gi|282162852|ref|YP_003355237.1| - 1.3e-32 112.8 14.1 1.8e-32 112.4 9.8 1.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) PKD PF00801.15 gi|282162852|ref|YP_003355237.1| - 9.2e-18 63.7 3.3 9.2e-18 63.7 2.3 2.1 2 0 0 2 2 2 1 PKD domain Beta_helix PF13229.1 gi|282162852|ref|YP_003355237.1| - 3.3e-13 49.6 23.4 6.6e-13 48.7 16.2 1.5 1 0 0 1 1 1 1 Right handed beta helix region Pectinesterase PF01095.14 gi|282162852|ref|YP_003355237.1| - 0.015 13.8 0.1 0.026 13.0 0.1 1.3 1 0 0 1 1 1 0 Pectinesterase PYC_OADA PF02436.13 gi|282162853|ref|YP_003355238.1| - 5.2e-61 205.5 0.7 9.3e-61 204.6 0.5 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|282162853|ref|YP_003355238.1| - 3.8e-40 138.0 0.0 5.6e-40 137.4 0.0 1.3 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|282162853|ref|YP_003355238.1| - 5.3e-20 70.8 6.6 6e-20 70.6 3.3 2.1 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|282162853|ref|YP_003355238.1| - 3.1e-13 49.1 1.4 6e-09 35.4 0.1 3.5 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD PF00529.15 gi|282162853|ref|YP_003355238.1| - 7.2e-06 25.5 1.7 0.00021 20.6 0.1 2.2 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_2 PF12700.2 gi|282162853|ref|YP_003355238.1| - 1.7e-05 24.1 3.8 0.00036 19.7 0.3 2.2 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|282162853|ref|YP_003355238.1| - 3.3e-05 24.1 1.4 0.057 13.7 0.1 3.0 3 0 0 3 3 3 2 HlyD family secretion protein RnfC_N PF13375.1 gi|282162853|ref|YP_003355238.1| - 3.4e-05 23.4 5.3 3.8e-05 23.3 2.1 2.2 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain GCV_H PF01597.14 gi|282162853|ref|YP_003355238.1| - 0.00072 19.2 5.2 0.079 12.6 0.5 3.0 3 1 1 4 4 4 2 Glycine cleavage H-protein NQRA PF05896.6 gi|282162853|ref|YP_003355238.1| - 0.0027 16.9 1.3 0.0043 16.2 0.9 1.2 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PYNP_C PF07831.8 gi|282162853|ref|YP_003355238.1| - 0.017 14.5 0.1 0.063 12.7 0.1 1.9 1 0 0 1 1 1 0 Pyrimidine nucleoside phosphorylase C-terminal domain PASTA PF03793.14 gi|282162853|ref|YP_003355238.1| - 0.13 11.9 2.0 1.9 8.1 0.3 2.7 1 1 1 2 2 2 0 PASTA domain Peptidase_M23 PF01551.17 gi|282162853|ref|YP_003355238.1| - 0.31 11.1 2.5 1 9.4 0.2 2.4 1 1 1 2 2 2 0 Peptidase family M23 CPSase_L_D2 PF02786.12 gi|282162854|ref|YP_003355239.1| - 3.7e-78 261.6 0.0 5.7e-78 261.0 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|282162854|ref|YP_003355239.1| - 1.1e-42 144.6 0.0 2.4e-42 143.5 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|282162854|ref|YP_003355239.1| - 3e-40 136.5 0.0 6.2e-40 135.4 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain BPL_LplA_LipB PF03099.14 gi|282162854|ref|YP_003355239.1| - 3.7e-21 75.4 0.0 1e-20 73.9 0.0 1.8 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family ATP-grasp_4 PF13535.1 gi|282162854|ref|YP_003355239.1| - 1.2e-16 61.0 0.0 3.3e-16 59.5 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|282162854|ref|YP_003355239.1| - 2.3e-12 46.3 0.0 9.3e-12 44.3 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|282162854|ref|YP_003355239.1| - 7.1e-08 32.0 0.0 2.1e-07 30.5 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|282162854|ref|YP_003355239.1| - 1.2e-05 24.7 0.0 3.7e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 ATP-grasp domain BPL_C PF02237.12 gi|282162854|ref|YP_003355239.1| - 0.001 18.6 0.2 0.0023 17.5 0.1 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain GARS_A PF01071.14 gi|282162854|ref|YP_003355239.1| - 0.034 13.7 0.0 0.074 12.6 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PrsW-protease PF13367.1 gi|282162856|ref|YP_003355241.1| - 1.5e-37 128.6 21.5 1.5e-37 128.6 14.9 3.1 3 0 0 3 3 3 2 Protease prsW family Pro_isomerase PF00160.16 gi|282162857|ref|YP_003355242.1| - 1.4e-47 161.7 0.6 1.7e-47 161.5 0.4 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Fe-ADH_2 PF13685.1 gi|282162859|ref|YP_003355244.1| - 2.4e-71 239.9 1.7 3e-71 239.6 1.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|282162859|ref|YP_003355244.1| - 1.1e-27 96.7 4.5 2.6e-27 95.4 3.1 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|282162859|ref|YP_003355244.1| - 3.5e-07 29.4 0.3 3.5e-06 26.1 0.2 2.4 1 1 0 1 1 1 1 3-dehydroquinate synthase YjeF_N PF03853.10 gi|282162859|ref|YP_003355244.1| - 0.072 12.6 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 YjeF-related protein N-terminus DUF63 PF01889.12 gi|282162860|ref|YP_003355245.1| - 1.1e-91 307.7 24.9 1.2e-91 307.5 17.3 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF95 PF01944.12 gi|282162861|ref|YP_003355246.1| - 2.6e-34 118.3 21.6 3.1e-34 118.0 15.0 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 EI24 PF07264.6 gi|282162861|ref|YP_003355246.1| - 0.011 15.1 5.2 0.011 15.1 3.6 2.2 1 1 1 2 2 2 0 Etoposide-induced protein 2.4 (EI24) DUF95 PF01944.12 gi|282162862|ref|YP_003355247.1| - 3.2e-34 118.0 18.4 3.8e-34 117.8 12.8 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 Bestrophin PF01062.16 gi|282162862|ref|YP_003355247.1| - 0.025 13.5 0.1 0.025 13.5 0.1 1.5 2 0 0 2 2 2 0 Bestrophin, RFP-TM, chloride channel DUF2636 PF11120.3 gi|282162862|ref|YP_003355247.1| - 0.41 10.1 2.6 2 7.9 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2636) NadA PF02445.11 gi|282162863|ref|YP_003355248.1| - 1.9e-118 394.5 0.3 2.2e-118 394.4 0.2 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sigma70_r4_2 PF08281.7 gi|282162863|ref|YP_003355248.1| - 0.025 14.0 0.0 0.048 13.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HypD PF01924.11 gi|282162864|ref|YP_003355249.1| - 5.3e-138 459.6 0.4 6.2e-138 459.3 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family EF1_GNE PF00736.14 gi|282162866|ref|YP_003355251.1| - 2.1e-20 72.1 0.5 2.2e-20 72.1 0.3 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.6 gi|282162867|ref|YP_003355252.1| - 1.1e-11 44.6 19.3 9.4e-06 25.6 3.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|282162867|ref|YP_003355252.1| - 2.7e-05 23.8 10.2 0.0018 18.0 7.1 2.1 1 1 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|282162867|ref|YP_003355252.1| - 0.0063 16.1 10.2 0.047 13.3 0.7 2.2 1 1 1 2 2 2 2 Putative transposase DNA-binding domain FYVE_2 PF02318.11 gi|282162867|ref|YP_003355252.1| - 0.015 15.1 5.1 0.018 14.9 3.5 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger UPF0547 PF10571.4 gi|282162867|ref|YP_003355252.1| - 0.021 14.5 5.6 0.021 14.5 3.9 2.5 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2039 PF10217.4 gi|282162867|ref|YP_003355252.1| - 0.024 14.6 3.1 0.024 14.6 2.2 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) zf-ribbon_3 PF13248.1 gi|282162867|ref|YP_003355252.1| - 0.039 13.1 18.6 11 5.3 10.1 3.7 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|282162867|ref|YP_003355252.1| - 0.041 13.3 18.4 0.11 12.0 0.2 3.6 2 2 0 2 2 2 0 zinc-ribbon domain DUF4428 PF14471.1 gi|282162867|ref|YP_003355252.1| - 0.045 13.5 5.3 0.078 12.7 3.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) C1_3 PF07649.7 gi|282162867|ref|YP_003355252.1| - 0.051 13.6 1.7 0.051 13.6 1.2 2.4 2 1 0 2 2 2 0 C1-like domain Prok-RING_1 PF14446.1 gi|282162867|ref|YP_003355252.1| - 0.075 12.7 9.6 0.27 10.9 0.4 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF2752 PF10825.3 gi|282162867|ref|YP_003355252.1| - 0.11 12.5 2.5 16 5.6 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) Zn_Tnp_IS91 PF14319.1 gi|282162867|ref|YP_003355252.1| - 0.13 11.7 8.1 0.18 11.3 5.6 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain PolC_DP2 PF03833.8 gi|282162867|ref|YP_003355252.1| - 0.14 9.7 5.7 0.17 9.5 3.9 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-RING_5 PF14634.1 gi|282162867|ref|YP_003355252.1| - 0.15 11.8 9.2 1.1 8.9 1.4 2.4 2 1 0 2 2 2 0 zinc-RING finger domain zf-UBP PF02148.14 gi|282162867|ref|YP_003355252.1| - 0.15 12.1 1.3 0.15 12.1 0.9 2.2 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein DUF2296 PF10058.4 gi|282162867|ref|YP_003355252.1| - 0.18 11.5 13.0 1.1 8.9 0.5 3.5 2 2 1 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) zf-HIT PF04438.11 gi|282162867|ref|YP_003355252.1| - 0.23 11.1 15.1 0.93 9.1 3.7 2.9 1 1 1 2 2 2 0 HIT zinc finger zf-Mss51 PF13824.1 gi|282162867|ref|YP_003355252.1| - 0.31 10.9 12.1 1.6 8.6 1.4 2.5 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.1 gi|282162867|ref|YP_003355252.1| - 0.32 10.7 13.9 3.8 7.2 0.1 3.6 2 1 1 3 3 3 0 Nudix N-terminal C1_1 PF00130.17 gi|282162867|ref|YP_003355252.1| - 0.54 10.0 9.4 0.26 11.0 0.4 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TerY-C PF15616.1 gi|282162867|ref|YP_003355252.1| - 0.67 9.8 11.1 0.16 11.8 6.0 1.3 1 1 0 1 1 1 0 TerY-C metal binding domain zf-C2H2 PF00096.21 gi|282162867|ref|YP_003355252.1| - 0.73 10.3 9.8 13 6.4 0.4 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type DUF1272 PF06906.6 gi|282162867|ref|YP_003355252.1| - 0.75 9.6 9.9 8.7 6.2 6.9 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zinc-ribbons_6 PF07191.7 gi|282162867|ref|YP_003355252.1| - 1 9.2 8.5 15 5.4 4.2 2.1 1 1 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|282162867|ref|YP_003355252.1| - 1.2 8.8 9.7 1.6 8.4 0.3 2.3 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) NMD3 PF04981.8 gi|282162867|ref|YP_003355252.1| - 1.6 7.7 7.9 1.9 7.5 5.5 1.0 1 0 0 1 1 1 0 NMD3 family zf-H2C2_2 PF13465.1 gi|282162867|ref|YP_003355252.1| - 1.8 8.9 13.1 5.3 7.5 0.3 3.6 3 1 1 4 4 4 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.2 gi|282162867|ref|YP_003355252.1| - 3.1 7.6 19.3 3.9 7.3 0.2 3.7 2 1 1 3 3 3 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|282162867|ref|YP_003355252.1| - 3.1 7.4 13.7 6.4 6.4 0.1 3.9 3 1 1 4 4 4 0 Transcription factor S-II (TFIIS) HypA PF01155.14 gi|282162867|ref|YP_003355252.1| - 3.2 7.4 9.4 0.79 9.4 0.4 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-AN1 PF01428.11 gi|282162867|ref|YP_003355252.1| - 3.6 7.5 10.8 5.7 6.9 0.6 2.5 2 1 0 2 2 2 0 AN1-like Zinc finger zf-Di19 PF05605.7 gi|282162867|ref|YP_003355252.1| - 4.2 7.5 6.7 2.8e+02 1.7 4.7 2.4 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_4 PF13717.1 gi|282162867|ref|YP_003355252.1| - 4.3 7.1 17.3 1.6 8.4 0.2 3.9 3 1 1 4 4 4 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|282162867|ref|YP_003355252.1| - 4.5 6.9 17.7 11 5.7 2.1 3.9 3 1 0 3 3 3 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|282162867|ref|YP_003355252.1| - 4.5 7.2 13.9 2.9 7.8 0.3 3.4 1 1 3 4 4 4 0 Rubredoxin zf-LITAF-like PF10601.4 gi|282162867|ref|YP_003355252.1| - 5.9 6.8 10.3 1.4 8.8 1.5 2.9 1 1 1 3 3 3 0 LITAF-like zinc ribbon domain zf-NADH-PPase PF09297.6 gi|282162867|ref|YP_003355252.1| - 6 6.4 16.6 4.3 6.9 0.3 4.0 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain ADK_lid PF05191.9 gi|282162867|ref|YP_003355252.1| - 7.3 6.3 13.0 6.3 6.5 0.1 3.7 3 1 1 4 4 4 0 Adenylate kinase, active site lid DNA_ligase_ZBD PF03119.11 gi|282162867|ref|YP_003355252.1| - 8.1 6.2 16.4 0.25 11.0 1.1 3.0 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain C1_4 PF07975.7 gi|282162867|ref|YP_003355252.1| - 9 6.3 11.5 16 5.6 5.3 2.3 1 1 1 2 2 2 0 TFIIH C1-like domain zf-IS66 PF13005.2 gi|282162867|ref|YP_003355252.1| - 9.9 6.2 16.2 11 6.1 3.1 3.2 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 IBR PF01485.16 gi|282162867|ref|YP_003355252.1| - 10 6.1 10.7 1.1e+02 2.7 7.4 2.4 1 1 0 1 1 1 0 IBR domain Arginosuc_synth PF00764.14 gi|282162868|ref|YP_003355253.1| - 1.9e-174 580.2 0.0 2.1e-174 580.0 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.8 gi|282162868|ref|YP_003355253.1| - 0.0021 17.3 0.0 0.0048 16.2 0.0 1.6 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|282162868|ref|YP_003355253.1| - 0.008 15.1 0.0 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|282162868|ref|YP_003355253.1| - 0.018 14.5 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase tRNA_Me_trans PF03054.11 gi|282162868|ref|YP_003355253.1| - 0.13 10.7 0.0 0.23 9.9 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase YesK PF14150.1 gi|282162869|ref|YP_003355254.1| - 0.00043 20.3 0.6 0.00053 20.0 0.4 1.1 1 0 0 1 1 1 1 YesK-like protein Polysacc_synt_C PF14667.1 gi|282162869|ref|YP_003355254.1| - 0.037 13.8 1.5 0.042 13.6 1.1 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain Peptidase_A24 PF01478.13 gi|282162869|ref|YP_003355254.1| - 0.17 12.0 1.1 0.2 11.8 0.8 1.1 1 0 0 1 1 1 0 Type IV leader peptidase family CPSase_L_D2 PF02786.12 gi|282162870|ref|YP_003355255.1| - 7.1e-107 355.4 0.2 1.8e-70 236.4 0.0 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|282162870|ref|YP_003355255.1| - 3.2e-49 165.6 0.1 3.2e-23 81.9 0.0 3.5 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|282162870|ref|YP_003355255.1| - 1.5e-42 144.2 0.0 3.8e-42 142.9 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|282162870|ref|YP_003355255.1| - 6.9e-35 120.4 0.0 5.9e-17 61.9 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|282162870|ref|YP_003355255.1| - 9.5e-25 87.0 0.0 2.2e-10 39.8 0.0 3.7 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|282162870|ref|YP_003355255.1| - 4.1e-22 77.9 0.4 1.9e-20 72.5 0.0 3.6 4 0 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.17 gi|282162870|ref|YP_003355255.1| - 9.9e-17 60.8 0.0 6.6e-09 35.3 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|282162870|ref|YP_003355255.1| - 4.4e-15 55.6 0.0 1.2e-08 34.5 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|282162870|ref|YP_003355255.1| - 2e-12 47.2 0.1 2.7e-06 27.3 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain Jag_N PF14804.1 gi|282162870|ref|YP_003355255.1| - 0.038 14.0 0.1 0.26 11.3 0.0 2.5 2 0 0 2 2 2 0 Jag N-terminus Hydrolase PF00702.21 gi|282162870|ref|YP_003355255.1| - 0.059 13.7 0.0 21 5.4 0.0 3.4 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase CobN-Mg_chel PF02514.11 gi|282162870|ref|YP_003355255.1| - 0.19 9.0 0.0 0.29 8.4 0.0 1.1 1 0 0 1 1 1 0 CobN/Magnesium Chelatase CPSase_sm_chain PF00988.17 gi|282162871|ref|YP_003355256.1| - 7.7e-48 161.3 0.0 1.4e-47 160.4 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|282162871|ref|YP_003355256.1| - 5.1e-45 153.2 0.0 7e-45 152.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|282162871|ref|YP_003355256.1| - 4.4e-09 36.1 0.1 1.5e-06 27.8 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 F_bP_aldolase PF01116.15 gi|282162872|ref|YP_003355257.1| - 5.1e-111 370.3 0.8 5.5e-109 363.6 0.6 2.0 1 1 0 1 1 1 1 Fructose-bisphosphate aldolase class-II PFK PF00365.15 gi|282162873|ref|YP_003355258.1| - 1.3e-82 277.0 3.5 2.7e-81 272.6 2.4 2.0 1 1 0 1 1 1 1 Phosphofructokinase SGL PF08450.7 gi|282162874|ref|YP_003355259.1| - 1.9e-13 50.3 0.3 0.00023 20.5 0.1 4.6 1 1 0 2 2 2 2 SMP-30/Gluconolaconase/LRE-like region Reg_prop PF07494.6 gi|282162874|ref|YP_003355259.1| - 1e-10 40.3 4.4 0.16 12.0 0.0 6.4 6 0 0 6 6 6 3 Two component regulator propeller NHL PF01436.16 gi|282162874|ref|YP_003355259.1| - 1.8e-08 33.9 2.0 0.00026 20.7 0.0 5.4 5 1 1 6 6 6 1 NHL repeat MRJP PF03022.11 gi|282162874|ref|YP_003355259.1| - 0.00066 18.9 1.5 0.26 10.4 0.0 3.9 1 1 3 4 4 4 1 Major royal jelly protein ATPgrasp_YheCD PF14398.1 gi|282162874|ref|YP_003355259.1| - 0.013 14.2 0.7 0.93 8.2 0.0 3.1 3 1 1 4 4 4 0 YheC/D like ATP-grasp PLRV_ORF5 PF01690.12 gi|282162874|ref|YP_003355259.1| - 3 6.8 12.0 5.3 6.0 8.3 1.3 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Met_10 PF02475.11 gi|282162875|ref|YP_003355260.1| - 1e-59 201.5 0.0 1.3e-59 201.2 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|282162875|ref|YP_003355260.1| - 4.2e-06 27.3 0.0 8.2e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282162875|ref|YP_003355260.1| - 0.00028 20.9 0.0 0.00055 19.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|282162875|ref|YP_003355260.1| - 0.0016 18.0 0.0 0.0023 17.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|282162875|ref|YP_003355260.1| - 0.0088 15.4 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_21 PF05050.7 gi|282162875|ref|YP_003355260.1| - 0.012 15.6 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase FkbM domain tRNA_U5-meth_tr PF05958.6 gi|282162875|ref|YP_003355260.1| - 0.11 11.1 0.0 0.19 10.3 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase TRM PF02005.11 gi|282162875|ref|YP_003355260.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.1 gi|282162875|ref|YP_003355260.1| - 0.14 11.7 0.0 0.39 10.3 0.0 1.9 2 1 0 2 2 2 0 Methyltransferase domain NMD3 PF04981.8 gi|282162876|ref|YP_003355261.1| - 1.4e-60 204.3 0.5 1.7e-60 204.0 0.3 1.1 1 0 0 1 1 1 1 NMD3 family zf-NADH-PPase PF09297.6 gi|282162876|ref|YP_003355261.1| - 0.012 15.0 0.4 0.037 13.5 0.3 1.8 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|282162876|ref|YP_003355261.1| - 0.91 8.8 4.0 0.51 9.6 0.7 2.0 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|282162876|ref|YP_003355261.1| - 5.3 6.9 9.6 4.1 7.3 4.7 2.2 2 1 0 2 2 2 0 Double zinc ribbon RecR PF02132.10 gi|282162876|ref|YP_003355261.1| - 7.5 6.0 6.6 9.2 5.8 0.7 2.8 2 0 0 2 2 2 0 RecR protein Paralemmin PF03285.10 gi|282162877|ref|YP_003355262.1| - 0.56 9.6 6.0 0.81 9.1 4.1 1.2 1 0 0 1 1 1 0 Paralemmin rve PF00665.21 gi|282162878|ref|YP_003355263.1| - 8.3e-27 93.6 0.0 1.3e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|282162878|ref|YP_003355263.1| - 1.1e-19 69.7 0.1 2.2e-19 68.7 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.1 gi|282162878|ref|YP_003355263.1| - 1e-13 51.0 3.4 1e-13 51.0 2.4 2.1 3 0 0 3 3 3 1 HTH-like domain rve_2 PF13333.1 gi|282162878|ref|YP_003355263.1| - 2.3e-08 33.9 3.6 2.3e-08 33.9 2.5 1.7 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.1 gi|282162878|ref|YP_003355263.1| - 2.7e-07 30.6 0.1 3.8e-07 30.1 0.1 1.2 1 0 0 1 1 1 1 DDE domain HTH_28 PF13518.1 gi|282162878|ref|YP_003355263.1| - 0.021 14.8 0.9 0.044 13.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|282162878|ref|YP_003355263.1| - 0.034 14.2 0.1 0.15 12.1 0.0 2.3 2 1 0 2 2 2 0 Winged helix-turn helix HTH_17 PF12728.2 gi|282162878|ref|YP_003355263.1| - 0.057 13.6 0.2 6.5 7.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|282162879|ref|YP_003355264.1| - 5.7e-13 48.6 1.0 6.6e-13 48.4 0.7 1.2 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.1 gi|282162879|ref|YP_003355264.1| - 9.6e-07 28.6 0.0 1.7e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|282162879|ref|YP_003355264.1| - 0.00011 21.2 0.0 0.00051 19.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.1 gi|282162879|ref|YP_003355264.1| - 0.00026 21.1 0.5 0.00032 20.8 0.3 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|282162879|ref|YP_003355264.1| - 0.00039 19.9 0.0 0.00086 18.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Frankia_peptide PF14407.1 gi|282162879|ref|YP_003355264.1| - 0.00067 19.3 0.2 1.1 9.0 0.0 2.2 2 0 0 2 2 2 2 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. HTH_Tnp_IS630 PF01710.11 gi|282162879|ref|YP_003355264.1| - 0.0065 16.1 0.2 0.0083 15.7 0.1 1.2 1 1 0 1 1 1 1 Transposase CENP-B_N PF04218.8 gi|282162879|ref|YP_003355264.1| - 0.031 13.6 0.1 0.071 12.5 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain DUF433 PF04255.9 gi|282162879|ref|YP_003355264.1| - 0.036 13.4 0.0 0.066 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF433) DUF217 PF02697.9 gi|282162879|ref|YP_003355264.1| - 0.044 14.0 0.6 2.2 8.5 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized ACR, COG1753 Glycos_transf_2 PF00535.21 gi|282162880|ref|YP_003355265.1| - 1.5e-33 115.8 0.0 1.9e-33 115.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282162880|ref|YP_003355265.1| - 5e-26 91.9 0.0 6.3e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|282162880|ref|YP_003355265.1| - 9e-18 64.3 0.0 1.1e-17 64.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|282162880|ref|YP_003355265.1| - 5.1e-12 45.9 0.0 6.5e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|282162880|ref|YP_003355265.1| - 1.4e-10 40.7 0.0 2.3e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.1 gi|282162880|ref|YP_003355265.1| - 0.00045 19.5 0.0 0.14 11.3 0.0 2.5 2 1 1 3 3 3 2 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.1 gi|282162880|ref|YP_003355265.1| - 0.0053 17.0 0.0 0.01 16.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 ACP PF06857.6 gi|282162880|ref|YP_003355265.1| - 0.079 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Malonate decarboxylase delta subunit (MdcD) GNT-I PF03071.10 gi|282162880|ref|YP_003355265.1| - 0.16 10.4 0.0 0.24 9.8 0.0 1.2 1 0 0 1 1 1 0 GNT-I family Fe_dep_repr_C PF02742.10 gi|282162881|ref|YP_003355266.1| - 2.2e-28 97.7 0.9 3.2e-28 97.2 0.1 1.6 2 0 0 2 2 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|282162881|ref|YP_003355266.1| - 2.7e-21 75.2 1.7 9.6e-21 73.4 0.2 2.4 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|282162881|ref|YP_003355266.1| - 5.3e-14 51.9 0.0 8.2e-13 48.1 0.0 2.2 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.2 gi|282162881|ref|YP_003355266.1| - 4e-07 29.5 0.0 3.3e-06 26.6 0.0 2.4 3 0 0 3 3 3 1 MarR family HTH_IclR PF09339.5 gi|282162881|ref|YP_003355266.1| - 1.3e-06 27.9 0.0 7.3e-06 25.4 0.0 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|282162881|ref|YP_003355266.1| - 1.6e-06 28.2 0.0 5e-06 26.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|282162881|ref|YP_003355266.1| - 4.8e-06 26.1 0.0 1.6e-05 24.4 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|282162881|ref|YP_003355266.1| - 2.1e-05 24.1 0.0 0.00013 21.6 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|282162881|ref|YP_003355266.1| - 7.7e-05 21.9 0.0 0.00017 20.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|282162881|ref|YP_003355266.1| - 0.00012 22.1 0.0 0.00032 20.7 0.0 1.8 2 0 0 2 2 1 1 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|282162881|ref|YP_003355266.1| - 0.00019 21.1 0.0 0.00055 19.6 0.0 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|282162881|ref|YP_003355266.1| - 0.00059 19.4 0.0 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.11 gi|282162881|ref|YP_003355266.1| - 0.0019 17.6 0.0 0.0038 16.7 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_10 PF04967.7 gi|282162881|ref|YP_003355266.1| - 0.0021 17.5 0.0 0.0059 16.1 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|282162881|ref|YP_003355266.1| - 0.0049 16.6 0.0 0.075 12.8 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r3 PF04539.11 gi|282162881|ref|YP_003355266.1| - 0.0052 16.6 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-70 region 3 FaeA PF04703.7 gi|282162881|ref|YP_003355266.1| - 0.012 15.7 0.0 0.03 14.4 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein GntR PF00392.16 gi|282162881|ref|YP_003355266.1| - 0.014 14.8 0.0 0.039 13.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|282162881|ref|YP_003355266.1| - 0.015 15.2 0.0 0.059 13.4 0.0 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain HrcA_DNA-bdg PF03444.10 gi|282162881|ref|YP_003355266.1| - 0.021 14.2 0.1 0.051 13.0 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_36 PF13730.1 gi|282162881|ref|YP_003355266.1| - 0.042 13.9 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|282162881|ref|YP_003355266.1| - 0.059 12.8 0.0 0.097 12.1 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit FeoC PF09012.5 gi|282162881|ref|YP_003355266.1| - 0.061 13.0 0.8 0.21 11.3 0.0 2.4 2 1 0 2 2 2 0 FeoC like transcriptional regulator HTH_12 PF08461.5 gi|282162881|ref|YP_003355266.1| - 0.1 12.3 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain B-block_TFIIIC PF04182.7 gi|282162881|ref|YP_003355266.1| - 0.12 12.2 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC FeoB_N PF02421.13 gi|282162882|ref|YP_003355267.1| - 2.1e-54 183.0 0.0 3.3e-54 182.4 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|282162882|ref|YP_003355267.1| - 3.3e-26 91.3 20.9 2.8e-14 52.9 6.0 3.4 4 0 0 4 4 4 2 Nucleoside recognition FeoB_C PF07664.7 gi|282162882|ref|YP_003355267.1| - 5.2e-15 54.6 0.4 5.2e-15 54.6 0.3 3.5 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|282162882|ref|YP_003355267.1| - 2.9e-14 53.0 0.0 4.8e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|282162882|ref|YP_003355267.1| - 0.00073 18.8 0.0 0.0013 18.0 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|282162882|ref|YP_003355267.1| - 0.0012 19.2 0.0 0.0022 18.4 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|282162882|ref|YP_003355267.1| - 0.058 12.9 0.1 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF99 PF01949.11 gi|282162882|ref|YP_003355267.1| - 0.076 12.1 0.0 0.16 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF99 DUF1146 PF06612.6 gi|282162882|ref|YP_003355267.1| - 5.8 6.9 9.6 0.12 12.3 0.6 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1146) ABC_tran PF00005.22 gi|282162883|ref|YP_003355268.1| - 1.8e-37 128.6 0.0 1.5e-18 67.4 0.0 2.7 2 1 0 2 2 2 2 ABC transporter RLI PF04068.10 gi|282162883|ref|YP_003355268.1| - 6.9e-13 47.9 3.4 1.7e-12 46.6 2.4 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.14 gi|282162883|ref|YP_003355268.1| - 1.7e-12 47.0 7.6 5.4e-05 22.5 1.1 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|282162883|ref|YP_003355268.1| - 4.9e-11 43.1 3.6 0.00047 20.2 0.0 4.2 2 2 1 3 3 3 2 AAA domain Fer4 PF00037.22 gi|282162883|ref|YP_003355268.1| - 3.1e-08 32.8 3.8 3.1e-08 32.8 2.7 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_17 PF13207.1 gi|282162883|ref|YP_003355268.1| - 5.6e-07 30.3 0.3 0.00058 20.6 0.1 2.8 2 1 0 2 2 2 1 AAA domain Fer4_6 PF12837.2 gi|282162883|ref|YP_003355268.1| - 7.4e-07 28.7 12.3 2.5e-06 27.0 1.7 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_18 PF13238.1 gi|282162883|ref|YP_003355268.1| - 1.4e-05 25.4 0.5 0.024 14.9 0.0 3.0 2 2 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|282162883|ref|YP_003355268.1| - 2.7e-05 23.9 0.0 0.015 14.9 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.1 gi|282162883|ref|YP_003355268.1| - 5.3e-05 23.3 0.6 0.0048 17.0 0.0 2.8 2 1 0 2 2 2 1 AAA domain Fer4_7 PF12838.2 gi|282162883|ref|YP_003355268.1| - 7.9e-05 22.9 10.6 0.00017 21.8 7.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA PF00004.24 gi|282162883|ref|YP_003355268.1| - 0.00011 22.4 0.1 0.065 13.4 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Fer4_9 PF13187.1 gi|282162883|ref|YP_003355268.1| - 0.00017 21.7 10.3 0.00037 20.7 7.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282162883|ref|YP_003355268.1| - 0.0003 20.6 10.1 0.00051 19.8 7.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain RNA_helicase PF00910.17 gi|282162883|ref|YP_003355268.1| - 0.00036 20.6 0.1 0.28 11.3 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_25 PF13481.1 gi|282162883|ref|YP_003355268.1| - 0.00037 19.9 0.5 0.71 9.2 0.0 3.5 3 0 0 3 3 3 1 AAA domain Fer4_10 PF13237.1 gi|282162883|ref|YP_003355268.1| - 0.00039 20.1 22.4 0.0017 18.0 1.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282162883|ref|YP_003355268.1| - 0.00059 19.6 3.3 0.00059 19.6 2.3 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain SRP54 PF00448.17 gi|282162883|ref|YP_003355268.1| - 0.0006 19.3 0.5 0.11 11.8 0.0 2.7 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|282162883|ref|YP_003355268.1| - 0.001 18.2 0.1 0.29 10.2 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|282162883|ref|YP_003355268.1| - 0.0017 17.5 0.1 0.047 12.7 0.0 2.4 3 0 0 3 3 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|282162883|ref|YP_003355268.1| - 0.0018 18.1 0.6 0.1 12.4 0.0 3.1 4 0 0 4 4 2 1 AAA domain SbcCD_C PF13558.1 gi|282162883|ref|YP_003355268.1| - 0.0036 17.1 0.0 2.8 7.9 0.0 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|282162883|ref|YP_003355268.1| - 0.0047 16.6 0.4 0.079 12.6 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|282162883|ref|YP_003355268.1| - 0.0057 16.3 0.1 1.2 8.8 0.0 3.3 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|282162883|ref|YP_003355268.1| - 0.006 16.5 0.2 0.58 10.1 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain Fer4_16 PF13484.1 gi|282162883|ref|YP_003355268.1| - 0.009 16.7 1.7 0.009 16.7 1.2 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Miro PF08477.8 gi|282162883|ref|YP_003355268.1| - 0.011 16.1 1.1 1.2 9.6 0.2 3.2 2 1 0 2 2 2 0 Miro-like protein AAA_29 PF13555.1 gi|282162883|ref|YP_003355268.1| - 0.012 15.1 0.4 1.4 8.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|282162883|ref|YP_003355268.1| - 0.02 14.7 2.2 1.3 8.8 0.0 3.3 2 1 1 3 3 3 0 AAA domain NB-ARC PF00931.17 gi|282162883|ref|YP_003355268.1| - 0.02 13.7 0.1 0.43 9.3 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain PhoH PF02562.11 gi|282162883|ref|YP_003355268.1| - 0.043 13.0 0.2 0.75 8.9 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein DUF87 PF01935.12 gi|282162883|ref|YP_003355268.1| - 0.051 13.3 3.3 5 6.8 0.0 2.9 3 0 0 3 3 2 0 Domain of unknown function DUF87 MMR_HSR1 PF01926.18 gi|282162883|ref|YP_003355268.1| - 0.052 13.5 0.1 0.43 10.5 0.0 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase Rad17 PF03215.10 gi|282162883|ref|YP_003355268.1| - 0.092 11.4 0.0 5.9 5.4 0.0 2.2 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_24 PF13479.1 gi|282162883|ref|YP_003355268.1| - 0.16 11.5 0.3 11 5.5 0.0 2.5 2 0 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.12 gi|282162883|ref|YP_003355268.1| - 0.16 11.3 0.9 22 4.3 0.1 2.8 3 0 0 3 3 3 0 Thymidylate kinase Fer4_8 PF13183.1 gi|282162883|ref|YP_003355268.1| - 0.17 11.9 8.2 0.36 10.8 5.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain ArgK PF03308.11 gi|282162883|ref|YP_003355268.1| - 0.18 10.5 1.6 3.3 6.4 0.0 2.2 2 0 0 2 2 2 0 ArgK protein NTPase_1 PF03266.10 gi|282162883|ref|YP_003355268.1| - 0.21 11.2 1.1 9.9 5.8 0.0 3.0 3 0 0 3 3 2 0 NTPase AAA_23 PF13476.1 gi|282162883|ref|YP_003355268.1| - 0.24 11.6 4.0 1.2 9.3 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|282162883|ref|YP_003355268.1| - 0.24 9.8 0.2 3.4 6.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain Fer4_18 PF13746.1 gi|282162883|ref|YP_003355268.1| - 0.65 10.4 9.2 0.11 12.9 2.7 2.2 1 1 2 3 3 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282162883|ref|YP_003355268.1| - 0.67 10.4 13.4 0.09 13.1 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|282162883|ref|YP_003355268.1| - 0.78 10.4 15.6 0.07 13.7 4.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_10 PF12846.2 gi|282162883|ref|YP_003355268.1| - 1.4 8.2 5.0 4 6.7 0.0 3.0 2 1 1 3 3 3 0 AAA-like domain F420_oxidored PF03807.12 gi|282162885|ref|YP_003355270.1| - 9.6e-21 74.0 0.4 1.6e-20 73.3 0.3 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|282162885|ref|YP_003355270.1| - 5.8e-07 29.3 0.1 7.2e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|282162885|ref|YP_003355270.1| - 3.8e-05 23.7 0.5 0.00011 22.3 0.1 1.9 2 0 0 2 2 2 1 NADH(P)-binding ApbA PF02558.11 gi|282162885|ref|YP_003355270.1| - 3.8e-05 23.1 0.2 5.4e-05 22.6 0.2 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA adh_short PF00106.20 gi|282162885|ref|YP_003355270.1| - 0.00017 21.5 0.2 0.0012 18.8 0.1 2.0 2 0 0 2 2 2 1 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|282162885|ref|YP_003355270.1| - 0.0008 19.7 0.3 0.0019 18.4 0.1 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|282162885|ref|YP_003355270.1| - 0.002 17.1 0.1 0.0027 16.7 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|282162885|ref|YP_003355270.1| - 0.011 15.7 0.2 0.041 13.8 0.2 1.9 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_2 PF03446.10 gi|282162885|ref|YP_003355270.1| - 0.012 15.4 0.2 0.018 14.8 0.1 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Ldh_1_N PF00056.18 gi|282162885|ref|YP_003355270.1| - 0.08 12.7 0.7 0.18 11.5 0.5 1.6 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain NmrA PF05368.8 gi|282162885|ref|YP_003355270.1| - 0.097 11.9 0.5 0.14 11.3 0.3 1.2 1 0 0 1 1 1 0 NmrA-like family UDPG_MGDP_dh_N PF03721.9 gi|282162885|ref|YP_003355270.1| - 0.11 11.8 0.2 0.23 10.8 0.1 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KR PF08659.5 gi|282162885|ref|YP_003355270.1| - 0.12 12.0 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 KR domain HhH-GPD PF00730.20 gi|282162886|ref|YP_003355271.1| - 7.5e-13 48.7 0.0 1.1e-12 48.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|282162886|ref|YP_003355271.1| - 1.7e-06 27.3 0.0 1.3e-05 24.5 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|282162886|ref|YP_003355271.1| - 0.0004 20.4 0.6 1.4 9.1 0.0 2.7 3 0 0 3 3 3 2 Helix-hairpin-helix domain ParA PF10609.4 gi|282162887|ref|YP_003355272.1| - 2.9e-33 113.6 0.4 5.6e-33 112.6 0.3 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|282162887|ref|YP_003355272.1| - 1.5e-20 73.4 0.1 2.1e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|282162887|ref|YP_003355272.1| - 1.8e-07 30.9 1.2 0.00075 19.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.1 gi|282162887|ref|YP_003355272.1| - 1.8e-06 27.9 0.1 5.4e-05 23.1 0.0 2.5 2 1 1 3 3 3 1 AAA domain ArsA_ATPase PF02374.10 gi|282162887|ref|YP_003355272.1| - 1.9e-06 27.1 1.2 4e-06 26.0 0.5 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|282162887|ref|YP_003355272.1| - 1.7e-05 24.0 0.0 3.6e-05 22.9 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ ArgK PF03308.11 gi|282162887|ref|YP_003355272.1| - 0.00058 18.7 0.2 0.0011 17.8 0.1 1.4 1 0 0 1 1 1 1 ArgK protein Fer4_NifH PF00142.13 gi|282162887|ref|YP_003355272.1| - 0.00096 18.4 0.4 0.028 13.6 0.0 2.3 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|282162887|ref|YP_003355272.1| - 0.0034 16.7 0.1 0.01 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain YhjQ PF06564.7 gi|282162887|ref|YP_003355272.1| - 0.0055 16.0 0.5 0.013 14.9 0.1 1.6 2 0 0 2 2 2 1 YhjQ protein DUF258 PF03193.11 gi|282162887|ref|YP_003355272.1| - 0.021 14.0 0.1 0.035 13.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|282162887|ref|YP_003355272.1| - 0.024 15.4 0.2 0.36 11.6 0.1 2.3 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|282162887|ref|YP_003355272.1| - 0.097 12.3 0.2 0.26 11.0 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.15 gi|282162887|ref|YP_003355272.1| - 0.1 12.2 0.1 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase SRP54 PF00448.17 gi|282162887|ref|YP_003355272.1| - 0.11 11.9 0.2 0.21 11.0 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|282162887|ref|YP_003355272.1| - 0.12 11.8 0.4 0.16 11.3 0.3 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|282162887|ref|YP_003355272.1| - 0.12 11.8 0.1 0.6 9.6 0.1 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain VirC1 PF07015.6 gi|282162887|ref|YP_003355272.1| - 0.14 11.2 0.1 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein AAA_19 PF13245.1 gi|282162887|ref|YP_003355272.1| - 0.25 11.1 0.9 0.68 9.7 0.1 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_30 PF13604.1 gi|282162887|ref|YP_003355272.1| - 0.31 10.6 1.6 0.25 10.8 0.2 1.5 2 0 0 2 2 2 0 AAA domain HMG-CoA_red PF00368.13 gi|282162888|ref|YP_003355273.1| - 1.6e-92 310.0 3.4 1.9e-92 309.8 2.3 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase HTH_42 PF06224.7 gi|282162889|ref|YP_003355274.1| - 2e-40 139.1 0.7 2.3e-40 138.9 0.5 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain tRNA-synt_1 PF00133.17 gi|282162890|ref|YP_003355275.1| - 1.1e-197 657.7 0.3 3e-113 378.9 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|282162890|ref|YP_003355275.1| - 4.7e-34 117.3 2.1 1e-33 116.2 1.5 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|282162890|ref|YP_003355275.1| - 7.9e-27 93.9 0.2 4.8e-11 41.9 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|282162890|ref|YP_003355275.1| - 1.3e-05 24.5 0.0 4.8e-05 22.6 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|282162890|ref|YP_003355275.1| - 6e-05 21.8 0.0 0.0011 17.6 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class I (K) MAF_flag10 PF01973.13 gi|282162891|ref|YP_003355276.1| - 1.2e-36 125.7 0.0 1.5e-36 125.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|282162891|ref|YP_003355276.1| - 0.00084 18.9 0.5 0.0075 15.8 0.2 2.0 1 1 0 2 2 2 1 Thiamin pyrophosphokinase, catalytic domain DUF2953 PF11167.3 gi|282162892|ref|YP_003355277.1| - 0.48 10.3 0.2 0.48 10.3 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2953) Semialdhyde_dhC PF02774.13 gi|282162893|ref|YP_003355278.1| - 8.7e-43 146.3 0.0 1.5e-42 145.5 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|282162893|ref|YP_003355278.1| - 1.5e-34 118.8 0.0 3.4e-34 117.7 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DXP_reductoisom PF02670.11 gi|282162893|ref|YP_003355278.1| - 0.0024 18.3 0.0 0.0049 17.3 0.0 1.7 1 1 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DapB_N PF01113.15 gi|282162893|ref|YP_003355278.1| - 0.0027 17.5 0.0 0.0047 16.8 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|282162893|ref|YP_003355278.1| - 0.0045 17.4 0.0 0.0087 16.5 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.1 gi|282162893|ref|YP_003355278.1| - 0.0059 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding Gp_dh_C PF02800.15 gi|282162893|ref|YP_003355278.1| - 0.028 13.8 0.3 0.13 11.7 0.0 2.2 3 0 0 3 3 3 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Fer4 PF00037.22 gi|282162894|ref|YP_003355279.1| - 6.6e-18 63.5 19.1 3.3e-09 35.9 4.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|282162894|ref|YP_003355279.1| - 9.6e-17 60.0 18.3 2.4e-08 33.4 3.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282162894|ref|YP_003355279.1| - 9.7e-14 51.4 12.6 1.2e-13 51.1 8.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282162894|ref|YP_003355279.1| - 1.7e-13 50.6 28.6 5.5e-10 39.3 11.3 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282162894|ref|YP_003355279.1| - 7e-13 47.6 17.5 6.2e-07 28.9 3.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282162894|ref|YP_003355279.1| - 7.6e-13 48.0 11.7 8.8e-13 47.8 8.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282162894|ref|YP_003355279.1| - 1e-10 42.2 14.0 1.7e-05 25.4 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|282162894|ref|YP_003355279.1| - 5.4e-10 38.7 14.0 2.5e-05 24.2 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282162894|ref|YP_003355279.1| - 7.2e-10 38.5 13.8 2.1e-09 37.0 9.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282162894|ref|YP_003355279.1| - 1e-07 32.3 17.2 0.00037 20.9 3.5 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|282162894|ref|YP_003355279.1| - 9.9e-07 28.7 26.6 7.8e-06 25.8 10.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|282162894|ref|YP_003355279.1| - 5.3e-06 26.6 22.7 0.0091 16.4 5.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|282162894|ref|YP_003355279.1| - 7.1e-06 26.3 20.0 0.0019 18.5 3.5 2.6 2 1 1 3 3 3 3 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|282162894|ref|YP_003355279.1| - 2.6e-05 24.4 14.4 0.017 15.4 1.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282162894|ref|YP_003355279.1| - 2.7e-05 24.5 18.0 0.0025 18.1 3.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|282162894|ref|YP_003355279.1| - 0.0002 21.2 7.6 0.00027 20.7 5.3 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|282162894|ref|YP_003355279.1| - 0.065 13.0 6.9 0.083 12.7 4.8 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster c-SKI_SMAD_bind PF08782.5 gi|282162894|ref|YP_003355279.1| - 3.7 7.7 6.0 3.3 7.8 0.4 2.0 1 1 1 2 2 2 0 c-SKI Smad4 binding domain DUF164 PF02591.10 gi|282162894|ref|YP_003355279.1| - 6.2 6.7 9.9 19 5.1 5.2 2.2 1 1 1 2 2 2 0 Putative zinc ribbon domain DapB_C PF05173.9 gi|282162895|ref|YP_003355280.1| - 2.8e-47 159.8 0.1 4e-47 159.3 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|282162895|ref|YP_003355280.1| - 2.3e-30 105.0 2.0 4e-30 104.2 1.4 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|282162895|ref|YP_003355280.1| - 0.0046 17.2 0.7 0.0093 16.2 0.5 1.7 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|282162895|ref|YP_003355280.1| - 0.006 16.9 0.3 0.011 16.1 0.2 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Peripla_BP_6 PF13458.1 gi|282162895|ref|YP_003355280.1| - 0.015 14.6 0.1 0.022 14.0 0.1 1.4 1 0 0 1 1 1 0 Periplasmic binding protein GFO_IDH_MocA PF01408.17 gi|282162895|ref|YP_003355280.1| - 0.019 15.5 0.4 0.085 13.3 0.1 2.0 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_N PF00044.19 gi|282162895|ref|YP_003355280.1| - 0.036 14.0 0.4 0.17 11.8 0.3 2.0 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|282162895|ref|YP_003355280.1| - 0.075 12.0 0.4 0.083 11.8 0.3 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase DHDPS PF00701.17 gi|282162896|ref|YP_003355281.1| - 1.4e-96 322.5 0.2 1.5e-96 322.3 0.1 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Ribosomal_S17e PF00833.13 gi|282162897|ref|YP_003355282.1| - 4.3e-13 49.0 0.1 4.7e-13 48.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 Glycos_transf_2 PF00535.21 gi|282162898|ref|YP_003355283.1| - 7e-16 58.3 0.0 9.1e-16 57.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282162898|ref|YP_003355283.1| - 5.6e-06 26.3 0.0 6.8e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.15 gi|282162899|ref|YP_003355284.1| - 1e-28 99.8 0.0 2.4e-28 98.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282162899|ref|YP_003355284.1| - 1.3e-19 70.8 0.0 7.9e-19 68.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|282162899|ref|YP_003355284.1| - 3.4e-18 66.0 0.4 1.3e-16 60.9 0.0 3.0 3 1 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282162899|ref|YP_003355284.1| - 2e-14 53.7 0.0 3.5e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|282162899|ref|YP_003355284.1| - 8.4e-08 32.3 0.0 2e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|282162900|ref|YP_003355285.1| - 4.8e-24 84.9 0.0 5.9e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282162900|ref|YP_003355285.1| - 6.4e-15 55.5 0.0 7.8e-15 55.2 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|282162900|ref|YP_003355285.1| - 0.0024 17.0 0.0 0.057 12.4 0.0 2.6 2 1 0 2 2 2 1 Glycosyltransferase like family 2 DUF849 PF05853.7 gi|282162901|ref|YP_003355286.1| - 8e-87 290.5 0.0 8.9e-87 290.4 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic protein of unknown function (DUF849) Radical_SAM PF04055.16 gi|282162901|ref|YP_003355286.1| - 0.0063 16.7 0.0 0.014 15.5 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily AMP-binding PF00501.23 gi|282162902|ref|YP_003355287.1| - 5.8e-85 285.1 0.0 8.1e-85 284.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|282162902|ref|YP_003355287.1| - 4e-13 50.1 0.8 7.6e-13 49.2 0.5 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PP-binding PF00550.20 gi|282162902|ref|YP_003355287.1| - 2.4e-12 46.9 0.1 1.7e-11 44.2 0.1 2.2 2 0 0 2 2 2 1 Phosphopantetheine attachment site GH3 PF03321.8 gi|282162902|ref|YP_003355287.1| - 0.085 11.3 0.0 0.66 8.4 0.0 1.9 2 0 0 2 2 2 0 GH3 auxin-responsive promoter AMP-binding PF00501.23 gi|282162903|ref|YP_003355288.1| - 1.5e-98 329.9 0.0 2e-98 329.5 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Condensation PF00668.15 gi|282162903|ref|YP_003355288.1| - 7.1e-75 251.6 0.0 9.6e-75 251.2 0.0 1.2 1 0 0 1 1 1 1 Condensation domain Thioesterase PF00975.15 gi|282162903|ref|YP_003355288.1| - 1.4e-29 103.9 0.2 9.5e-24 84.8 0.2 2.3 2 0 0 2 2 2 2 Thioesterase domain HxxPF_rpt PF13745.1 gi|282162903|ref|YP_003355288.1| - 1.3e-21 76.7 0.1 2.8e-21 75.6 0.1 1.6 1 0 0 1 1 1 1 HxxPF-repeated domain PP-binding PF00550.20 gi|282162903|ref|YP_003355288.1| - 5.5e-14 52.1 0.0 1.8e-13 50.5 0.0 2.0 1 0 0 1 1 1 1 Phosphopantetheine attachment site AMP-binding_C PF13193.1 gi|282162903|ref|YP_003355288.1| - 6.2e-14 52.7 0.1 1.8e-13 51.2 0.1 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Abhydrolase_6 PF12697.2 gi|282162903|ref|YP_003355288.1| - 2.3e-11 43.9 2.6 5.9e-11 42.6 1.2 2.2 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|282162903|ref|YP_003355288.1| - 0.00046 19.9 0.0 0.0017 18.1 0.0 1.9 1 0 0 1 1 1 1 Alpha/beta hydrolase family Transferase PF02458.10 gi|282162903|ref|YP_003355288.1| - 0.019 13.3 0.0 0.033 12.6 0.0 1.2 1 0 0 1 1 1 0 Transferase family DLH PF01738.13 gi|282162903|ref|YP_003355288.1| - 0.021 14.0 0.0 0.038 13.2 0.0 1.3 1 0 0 1 1 1 0 Dienelactone hydrolase family AATase PF07247.7 gi|282162903|ref|YP_003355288.1| - 0.48 8.9 0.0 0.73 8.3 0.0 1.1 1 0 0 1 1 1 0 Alcohol acetyltransferase ACPS PF01648.15 gi|282162904|ref|YP_003355289.1| - 5.7e-11 42.2 0.0 1.3e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily Glyco_trans_1_4 PF13692.1 gi|282162905|ref|YP_003355290.1| - 7.8e-20 71.4 0.0 1.5e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|282162905|ref|YP_003355290.1| - 7.5e-05 22.2 0.0 0.00037 19.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|282162905|ref|YP_003355290.1| - 0.0034 17.6 0.0 0.0091 16.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282162906|ref|YP_003355291.1| - 1e-14 54.8 0.0 3.1e-14 53.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|282162906|ref|YP_003355291.1| - 5e-06 26.0 0.2 5.9e-05 22.5 0.0 2.8 3 1 1 4 4 4 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|282162906|ref|YP_003355291.1| - 3.5e-05 24.0 0.1 0.00021 21.4 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Methyltransf_23 PF13489.1 gi|282162907|ref|YP_003355292.1| - 1.8e-09 37.5 0.0 4e-09 36.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282162907|ref|YP_003355292.1| - 2.2e-05 24.8 0.0 3.4e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282162907|ref|YP_003355292.1| - 0.00014 21.4 0.0 0.00035 20.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282162907|ref|YP_003355292.1| - 0.0027 18.1 0.0 0.0047 17.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Glycos_transf_2 PF00535.21 gi|282162908|ref|YP_003355293.1| - 1.7e-33 115.7 0.4 7.3e-33 113.6 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282162908|ref|YP_003355293.1| - 6.5e-24 84.9 0.0 8.5e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|282162908|ref|YP_003355293.1| - 1.6e-09 37.7 0.0 5e-09 36.1 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.1 gi|282162908|ref|YP_003355293.1| - 3.3e-09 36.3 0.0 5.4e-08 32.3 0.0 2.1 1 1 1 2 2 2 1 Glycosyltransferase like family Glyco_tranf_2_2 PF10111.4 gi|282162908|ref|YP_003355293.1| - 2.8e-05 23.3 0.0 4.4e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|282162908|ref|YP_003355293.1| - 0.0068 16.7 0.0 0.015 15.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_2 PF00535.21 gi|282162909|ref|YP_003355294.1| - 2.1e-33 115.3 0.2 2.9e-33 114.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282162909|ref|YP_003355294.1| - 1.8e-09 37.7 0.0 3.3e-09 36.8 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|282162909|ref|YP_003355294.1| - 1.9e-07 30.4 0.0 2.7e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|282162909|ref|YP_003355294.1| - 1.7e-05 25.0 0.0 3.4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|282162909|ref|YP_003355294.1| - 0.12 11.6 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 DUF2975 PF11188.3 gi|282162909|ref|YP_003355294.1| - 2.8 7.6 7.8 19 4.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) EamA PF00892.15 gi|282162910|ref|YP_003355295.1| - 2e-07 31.0 17.5 3.9e-07 30.1 12.1 1.5 1 1 0 1 1 1 1 EamA-like transporter family UPF0546 PF10639.4 gi|282162910|ref|YP_003355295.1| - 1.1e-05 25.2 4.8 1.3e-05 24.9 3.3 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0546 EmrE PF13536.1 gi|282162910|ref|YP_003355295.1| - 0.0014 18.8 12.8 0.002 18.2 8.8 1.3 1 1 0 1 1 1 1 Multidrug resistance efflux transporter Mg_trans_NIPA PF05653.9 gi|282162910|ref|YP_003355295.1| - 0.0033 16.4 6.9 0.0034 16.3 4.8 1.1 1 0 0 1 1 1 1 Magnesium transporter NIPA TPT PF03151.11 gi|282162910|ref|YP_003355295.1| - 0.0083 15.7 2.6 0.0083 15.7 1.8 2.0 2 0 0 2 2 2 1 Triose-phosphate Transporter family Multi_Drug_Res PF00893.14 gi|282162910|ref|YP_003355295.1| - 0.036 14.5 9.4 0.061 13.7 6.5 1.4 1 1 0 1 1 1 0 Small Multidrug Resistance protein YhhN PF07947.9 gi|282162910|ref|YP_003355295.1| - 0.26 10.6 10.9 0.34 10.2 7.5 1.1 1 0 0 1 1 1 0 YhhN-like protein 7TMR-DISM_7TM PF07695.6 gi|282162910|ref|YP_003355295.1| - 0.27 10.8 15.5 0.32 10.6 10.7 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling DsbD_2 PF13386.1 gi|282162910|ref|YP_003355295.1| - 2 8.1 9.5 0.74 9.5 3.1 2.2 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region Methyltransf_23 PF13489.1 gi|282162911|ref|YP_003355296.1| - 4.1e-19 68.8 0.0 5.2e-19 68.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282162911|ref|YP_003355296.1| - 3.1e-11 43.6 0.0 7.6e-11 42.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282162911|ref|YP_003355296.1| - 1.1e-09 38.0 0.3 3e-08 33.3 0.2 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282162911|ref|YP_003355296.1| - 1e-06 29.1 0.2 4.2e-05 23.9 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282162911|ref|YP_003355296.1| - 8.6e-05 21.7 0.1 0.018 14.1 0.0 2.4 2 1 0 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|282162911|ref|YP_003355296.1| - 0.00018 22.0 0.4 0.0044 17.5 0.3 2.1 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|282162911|ref|YP_003355296.1| - 0.002 17.5 0.0 0.003 16.9 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|282162911|ref|YP_003355296.1| - 0.014 15.0 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_25 PF13649.1 gi|282162911|ref|YP_003355296.1| - 0.04 14.2 0.5 0.64 10.4 0.2 2.6 2 1 0 2 2 2 0 Methyltransferase domain AdoMet_MTase PF07757.8 gi|282162911|ref|YP_003355296.1| - 0.058 13.5 0.1 0.094 12.8 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase DREV PF05219.7 gi|282162911|ref|YP_003355296.1| - 0.063 12.1 0.0 0.081 11.7 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase CytB6-F_Fe-S PF08802.5 gi|282162912|ref|YP_003355297.1| - 3.4 7.7 7.6 0.19 11.7 0.4 2.7 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit Acyl_transf_3 PF01757.17 gi|282162913|ref|YP_003355298.1| - 4.3e-25 88.2 42.6 5.6e-25 87.8 29.5 1.1 1 0 0 1 1 1 1 Acyltransferase family Glycos_transf_2 PF00535.21 gi|282162914|ref|YP_003355299.1| - 3.4e-44 150.5 1.2 9.6e-23 80.6 0.1 2.6 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282162914|ref|YP_003355299.1| - 6.8e-34 117.6 0.0 7.6e-21 74.9 0.0 3.7 2 2 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|282162914|ref|YP_003355299.1| - 7.5e-26 90.8 4.9 1.3e-10 40.7 0.0 3.4 3 0 0 3 3 3 3 Glycosyltransferase like family 2 Methyltransf_23 PF13489.1 gi|282162914|ref|YP_003355299.1| - 7.9e-20 71.1 0.1 2.6e-19 69.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282162914|ref|YP_003355299.1| - 1.2e-13 50.9 0.1 2.6e-13 49.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282162914|ref|YP_003355299.1| - 6.6e-13 48.9 0.0 1.4e-12 47.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282162914|ref|YP_003355299.1| - 4.4e-10 39.9 0.0 1.1e-09 38.6 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282162914|ref|YP_003355299.1| - 4.7e-08 33.6 0.1 2.5e-07 31.2 0.0 2.4 3 0 0 3 3 1 1 Methyltransferase domain Glyco_trans_2_3 PF13632.1 gi|282162914|ref|YP_003355299.1| - 1.5e-07 31.3 0.3 1.4e-06 28.2 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferase family group 2 MetW PF07021.7 gi|282162914|ref|YP_003355299.1| - 7.1e-07 28.7 0.1 1.2e-06 28.0 0.1 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Glyco_transf_7C PF02709.9 gi|282162914|ref|YP_003355299.1| - 3.7e-05 23.1 0.1 0.004 16.5 0.0 2.6 2 0 0 2 2 2 1 N-terminal domain of galactosyltransferase NodS PF05401.6 gi|282162914|ref|YP_003355299.1| - 0.00091 18.6 0.0 0.0021 17.5 0.0 1.5 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.6 gi|282162914|ref|YP_003355299.1| - 0.0012 17.6 0.1 0.0025 16.5 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_26 PF13659.1 gi|282162914|ref|YP_003355299.1| - 0.0078 16.2 0.0 0.019 14.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|282162914|ref|YP_003355299.1| - 0.0098 14.9 0.0 0.023 13.7 0.0 1.5 1 0 0 1 1 1 1 O-methyltransferase Glyco_transf_21 PF13506.1 gi|282162914|ref|YP_003355299.1| - 0.012 14.8 0.0 0.03 13.6 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase family 21 NanE PF04131.9 gi|282162914|ref|YP_003355299.1| - 0.039 12.9 3.1 0.03 13.3 0.3 2.1 3 0 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF2205 PF10224.4 gi|282162914|ref|YP_003355299.1| - 0.046 13.2 0.3 0.12 11.9 0.2 1.7 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) ADIP PF11559.3 gi|282162914|ref|YP_003355299.1| - 0.12 12.3 2.5 0.23 11.3 1.8 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Med30 PF11315.3 gi|282162914|ref|YP_003355299.1| - 0.18 11.9 1.2 0.31 11.1 0.3 1.7 2 0 0 2 2 1 0 Mediator complex subunit 30 IncA PF04156.9 gi|282162914|ref|YP_003355299.1| - 0.28 10.7 0.8 0.47 10.0 0.6 1.2 1 0 0 1 1 1 0 IncA protein DivIC PF04977.10 gi|282162914|ref|YP_003355299.1| - 0.29 10.6 2.9 0.68 9.4 2.0 1.6 1 0 0 1 1 1 0 Septum formation initiator DUF904 PF06005.7 gi|282162914|ref|YP_003355299.1| - 0.37 11.0 4.8 0.8 10.0 3.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF904) ABC_tran PF00005.22 gi|282162915|ref|YP_003355300.1| - 4.5e-23 82.0 0.0 3.4e-22 79.1 0.0 2.2 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282162915|ref|YP_003355300.1| - 3e-11 43.8 5.4 3.7e-10 40.2 0.9 2.4 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|282162915|ref|YP_003355300.1| - 5.9e-07 28.9 0.0 1.3e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|282162915|ref|YP_003355300.1| - 6.7e-07 29.8 0.1 9.1e-07 29.4 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|282162915|ref|YP_003355300.1| - 9.2e-06 25.3 0.8 0.031 13.7 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_15 PF13175.1 gi|282162915|ref|YP_003355300.1| - 0.00015 20.9 0.1 0.39 9.7 0.0 2.4 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|282162915|ref|YP_003355300.1| - 0.00028 20.2 0.9 0.011 14.9 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|282162915|ref|YP_003355300.1| - 0.00061 20.5 0.3 0.001 19.8 0.2 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|282162915|ref|YP_003355300.1| - 0.00082 19.1 0.3 0.015 15.0 0.2 2.2 1 1 0 1 1 1 1 NTPase AAA PF00004.24 gi|282162915|ref|YP_003355300.1| - 0.0027 17.8 0.6 0.025 14.7 0.3 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|282162915|ref|YP_003355300.1| - 0.0039 17.0 0.7 0.38 10.6 0.5 2.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|282162915|ref|YP_003355300.1| - 0.0098 16.0 0.2 0.034 14.3 0.2 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|282162915|ref|YP_003355300.1| - 0.011 14.9 0.1 0.029 13.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|282162915|ref|YP_003355300.1| - 0.012 15.2 0.1 0.033 13.8 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|282162915|ref|YP_003355300.1| - 0.023 14.6 0.0 0.062 13.2 0.0 1.6 1 1 1 2 2 2 0 AAA ATPase domain Miro PF08477.8 gi|282162915|ref|YP_003355300.1| - 0.031 14.7 0.1 0.11 13.0 0.0 2.0 2 1 0 2 2 1 0 Miro-like protein AAA_33 PF13671.1 gi|282162915|ref|YP_003355300.1| - 0.037 13.8 0.1 0.076 12.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|282162915|ref|YP_003355300.1| - 0.042 13.4 0.1 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|282162915|ref|YP_003355300.1| - 0.048 13.3 0.2 0.1 12.3 0.1 1.5 1 1 0 1 1 1 0 Archaeal ATPase AAA_25 PF13481.1 gi|282162915|ref|YP_003355300.1| - 0.055 12.8 0.0 0.26 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Orthopox_B11R PF07033.6 gi|282162915|ref|YP_003355300.1| - 0.094 12.1 0.0 0.27 10.7 0.0 1.7 1 0 0 1 1 1 0 Orthopoxvirus B11R protein Dynamin_N PF00350.18 gi|282162915|ref|YP_003355300.1| - 0.12 12.1 0.0 0.24 11.2 0.0 1.7 1 0 0 1 1 1 0 Dynamin family AAA_18 PF13238.1 gi|282162915|ref|YP_003355300.1| - 0.13 12.6 0.6 0.51 10.6 0.4 2.2 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|282162915|ref|YP_003355300.1| - 0.14 11.6 0.1 0.15 11.5 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC2_membrane PF01061.19 gi|282162916|ref|YP_003355301.1| - 1.5e-27 96.1 27.6 1.5e-27 96.1 19.1 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|282162916|ref|YP_003355301.1| - 0.0023 17.0 24.3 0.0023 17.0 16.8 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF21 PF01595.15 gi|282162916|ref|YP_003355301.1| - 0.11 11.8 0.1 0.11 11.8 0.1 3.1 1 1 1 3 3 3 0 Domain of unknown function DUF21 ORC3_N PF07034.6 gi|282162916|ref|YP_003355301.1| - 0.25 10.2 1.9 0.42 9.5 1.3 1.2 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 3 N-terminus Glycos_transf_2 PF00535.21 gi|282162917|ref|YP_003355302.1| - 1.9e-32 112.2 0.0 2.7e-32 111.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282162917|ref|YP_003355302.1| - 2.9e-21 76.3 0.0 5.5e-21 75.4 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|282162917|ref|YP_003355302.1| - 2.9e-09 36.9 0.1 6.9e-09 35.6 0.1 1.7 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|282162917|ref|YP_003355302.1| - 6.8e-09 35.2 0.0 1.1e-08 34.5 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|282162917|ref|YP_003355302.1| - 0.0079 15.4 0.0 0.023 13.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.1 gi|282162917|ref|YP_003355302.1| - 0.037 13.2 0.1 2.9 7.0 0.0 2.7 2 1 1 3 3 3 0 Glycosyltransferase like family Glycos_transf_1 PF00534.15 gi|282162918|ref|YP_003355303.1| - 1.5e-29 102.5 0.0 2.4e-29 101.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282162918|ref|YP_003355303.1| - 3.9e-14 52.9 0.0 9.3e-14 51.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282162918|ref|YP_003355303.1| - 1.4e-08 34.7 0.1 3.6e-08 33.3 0.1 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|282162918|ref|YP_003355303.1| - 1.5e-05 25.1 0.0 4e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.14 gi|282162918|ref|YP_003355303.1| - 0.006 15.4 0.0 0.01 14.6 0.0 1.3 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase TPR_11 PF13414.1 gi|282162919|ref|YP_003355304.1| - 0.001 18.6 0.1 0.83 9.3 0.0 2.5 2 0 0 2 2 2 2 TPR repeat TPR_2 PF07719.12 gi|282162919|ref|YP_003355304.1| - 0.0013 18.4 3.8 0.12 12.3 0.1 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282162919|ref|YP_003355304.1| - 0.0016 18.4 0.2 0.77 10.1 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282162919|ref|YP_003355304.1| - 0.0097 16.4 0.0 3.9 8.3 0.0 2.8 2 0 0 2 2 2 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|282162919|ref|YP_003355304.1| - 0.013 15.6 0.1 0.041 14.0 0.0 1.9 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.1 gi|282162919|ref|YP_003355304.1| - 0.02 15.5 0.0 11 6.8 0.0 2.8 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282162919|ref|YP_003355304.1| - 0.054 13.8 0.0 2.4 8.5 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282162919|ref|YP_003355304.1| - 0.34 10.7 6.9 0.36 10.7 0.1 3.3 4 0 0 4 4 4 0 Tetratricopeptide repeat PQQ_2 PF13360.1 gi|282162920|ref|YP_003355305.1| - 4.6e-15 55.7 8.4 2.7e-06 27.0 0.5 4.0 2 2 0 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|282162920|ref|YP_003355305.1| - 0.014 14.8 1.5 20 4.9 0.0 5.1 4 0 0 4 4 4 0 PQQ enzyme repeat PQQ_3 PF13570.1 gi|282162920|ref|YP_003355305.1| - 0.05 13.8 0.7 0.05 13.8 0.5 7.7 6 3 2 8 8 8 0 PQQ-like domain tRNA-synt_2b PF00587.20 gi|282162921|ref|YP_003355306.1| - 5.1e-23 81.5 0.1 7.9e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|282162921|ref|YP_003355306.1| - 2.3e-17 62.7 0.3 4.1e-17 61.8 0.2 1.4 1 0 0 1 1 1 1 Anticodon binding domain AAA PF00004.24 gi|282162923|ref|YP_003355308.1| - 6.4e-46 155.8 0.1 2.1e-45 154.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|282162923|ref|YP_003355308.1| - 2.7e-06 27.1 0.1 2.1e-05 24.2 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|282162923|ref|YP_003355308.1| - 2.8e-06 27.4 0.0 6.4e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|282162923|ref|YP_003355308.1| - 3.6e-05 23.9 1.2 0.00069 19.7 0.1 2.6 2 1 0 2 2 1 1 AAA domain AAA_2 PF07724.9 gi|282162923|ref|YP_003355308.1| - 4.2e-05 23.5 0.1 0.00016 21.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|282162923|ref|YP_003355308.1| - 5.1e-05 22.4 0.0 0.00015 20.8 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|282162923|ref|YP_003355308.1| - 9.4e-05 22.0 0.1 0.00024 20.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|282162923|ref|YP_003355308.1| - 0.00043 19.7 0.1 0.00084 18.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|282162923|ref|YP_003355308.1| - 0.0006 19.9 0.0 0.0013 18.8 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_14 PF13173.1 gi|282162923|ref|YP_003355308.1| - 0.00066 19.5 0.0 0.0022 17.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|282162923|ref|YP_003355308.1| - 0.00084 18.1 0.8 0.0015 17.2 0.0 1.7 2 0 0 2 2 2 1 TIP49 C-terminus DUF815 PF05673.8 gi|282162923|ref|YP_003355308.1| - 0.0016 17.4 0.0 0.0035 16.3 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|282162923|ref|YP_003355308.1| - 0.003 17.1 0.0 0.0067 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|282162923|ref|YP_003355308.1| - 0.0032 18.2 0.4 0.011 16.5 0.1 2.2 2 1 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|282162923|ref|YP_003355308.1| - 0.0039 17.0 0.0 0.0084 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|282162923|ref|YP_003355308.1| - 0.0052 15.9 0.0 0.045 12.8 0.0 2.5 1 1 1 2 2 2 1 KaiC Zeta_toxin PF06414.7 gi|282162923|ref|YP_003355308.1| - 0.0054 15.8 0.1 0.015 14.3 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin Mg_chelatase PF01078.16 gi|282162923|ref|YP_003355308.1| - 0.0057 15.8 0.1 0.012 14.7 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Parvo_NS1 PF01057.12 gi|282162923|ref|YP_003355308.1| - 0.0059 15.4 0.0 0.01 14.7 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_25 PF13481.1 gi|282162923|ref|YP_003355308.1| - 0.0087 15.4 1.0 0.069 12.5 0.1 2.3 1 1 1 2 2 2 1 AAA domain YscO PF07321.7 gi|282162923|ref|YP_003355308.1| - 0.0094 15.7 1.8 0.016 15.0 1.2 1.3 1 0 0 1 1 1 1 Type III secretion protein YscO GrpE PF01025.14 gi|282162923|ref|YP_003355308.1| - 0.01 15.3 1.4 0.77 9.2 0.4 2.4 2 0 0 2 2 2 0 GrpE AAA_18 PF13238.1 gi|282162923|ref|YP_003355308.1| - 0.011 16.0 0.3 0.1 12.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|282162923|ref|YP_003355308.1| - 0.012 15.0 0.0 0.054 12.9 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain PhoH PF02562.11 gi|282162923|ref|YP_003355308.1| - 0.025 13.8 0.2 0.11 11.7 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_28 PF13521.1 gi|282162923|ref|YP_003355308.1| - 0.035 14.0 0.0 0.068 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|282162923|ref|YP_003355308.1| - 0.047 13.7 0.1 0.14 12.2 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|282162923|ref|YP_003355308.1| - 0.05 12.4 0.3 0.24 10.2 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain DUF2051 PF09738.4 gi|282162923|ref|YP_003355308.1| - 0.053 12.7 0.6 0.083 12.1 0.4 1.4 1 0 0 1 1 1 0 Double stranded RNA binding protein (DUF2051) AAA_3 PF07726.6 gi|282162923|ref|YP_003355308.1| - 0.059 12.9 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|282162923|ref|YP_003355308.1| - 0.078 12.6 0.1 0.19 11.4 0.0 1.7 1 1 0 1 1 1 0 NACHT domain DMPK_coil PF08826.5 gi|282162923|ref|YP_003355308.1| - 0.44 10.4 7.9 1 9.3 5.5 1.6 1 0 0 1 1 1 0 DMPK coiled coil domain like IncA PF04156.9 gi|282162923|ref|YP_003355308.1| - 1.4 8.5 5.7 2.4 7.6 4.0 1.3 1 0 0 1 1 1 0 IncA protein AAA_23 PF13476.1 gi|282162923|ref|YP_003355308.1| - 6.9 6.9 8.5 8.3 6.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain PPDK_N PF01326.14 gi|282162924|ref|YP_003355309.1| - 4.5e-100 334.9 0.0 6.9e-100 334.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|282162924|ref|YP_003355309.1| - 1.4e-23 82.2 0.1 5.6e-23 80.2 0.0 2.1 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain ABC2_membrane_3 PF12698.2 gi|282162925|ref|YP_003355310.1| - 1.1e-48 166.0 28.9 9.2e-38 130.1 15.6 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|282162925|ref|YP_003355310.1| - 1.2e-30 106.2 18.7 1.2e-30 106.2 13.0 2.7 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|282162925|ref|YP_003355310.1| - 6.3e-19 67.8 16.4 2e-17 62.9 11.4 2.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282162925|ref|YP_003355310.1| - 6.4e-07 28.7 31.8 2e-06 27.1 22.0 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2371 PF10177.4 gi|282162925|ref|YP_003355310.1| - 0.13 12.0 0.1 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) ABC_tran PF00005.22 gi|282162926|ref|YP_003355311.1| - 7.2e-31 107.3 0.0 9.1e-31 106.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282162926|ref|YP_003355311.1| - 4.8e-16 59.5 0.0 3.8e-14 53.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|282162926|ref|YP_003355311.1| - 0.00043 20.6 0.0 0.00059 20.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|282162926|ref|YP_003355311.1| - 0.00044 19.4 0.0 0.13 11.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|282162926|ref|YP_003355311.1| - 0.0041 16.6 0.1 0.01 15.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|282162926|ref|YP_003355311.1| - 0.015 15.5 0.2 0.047 13.8 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|282162926|ref|YP_003355311.1| - 0.034 14.1 0.0 0.043 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|282162926|ref|YP_003355311.1| - 0.037 13.2 0.0 5.4 6.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|282162926|ref|YP_003355311.1| - 0.075 12.7 0.1 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|282162926|ref|YP_003355311.1| - 0.13 11.3 0.1 0.35 9.9 0.1 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|282162926|ref|YP_003355311.1| - 0.15 11.8 0.2 0.24 11.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) TrmB PF01978.14 gi|282162927|ref|YP_003355312.1| - 5.8e-22 77.1 0.5 1.1e-21 76.2 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|282162927|ref|YP_003355312.1| - 4.5e-05 23.5 0.1 0.00013 22.0 0.0 1.8 1 1 0 1 1 1 1 Penicillinase repressor HTH_27 PF13463.1 gi|282162927|ref|YP_003355312.1| - 0.00071 19.8 0.0 0.002 18.4 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|282162927|ref|YP_003355312.1| - 0.0089 15.9 0.2 0.029 14.3 0.1 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|282162927|ref|YP_003355312.1| - 0.0099 15.5 0.0 0.022 14.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|282162927|ref|YP_003355312.1| - 0.022 14.3 0.0 0.12 11.9 0.0 2.2 3 0 0 3 3 3 0 IclR helix-turn-helix domain Regulator_TrmB PF11495.3 gi|282162927|ref|YP_003355312.1| - 0.027 13.4 0.0 0.061 12.2 0.0 1.6 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB PcrB PF01884.12 gi|282162928|ref|YP_003355313.1| - 2.1e-63 213.6 0.1 2.5e-63 213.4 0.1 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.15 gi|282162928|ref|YP_003355313.1| - 0.0021 16.6 0.2 0.0092 14.5 0.0 2.0 2 1 1 3 3 3 1 Tryptophan synthase alpha chain MMR_HSR1 PF01926.18 gi|282162929|ref|YP_003355314.1| - 1.5e-18 66.8 0.1 3.3e-18 65.7 0.0 1.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|282162929|ref|YP_003355314.1| - 4.4e-18 64.8 0.1 9.2e-18 63.8 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|282162929|ref|YP_003355314.1| - 4.3e-15 55.3 0.4 4.8e-14 51.9 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B ArgK PF03308.11 gi|282162929|ref|YP_003355314.1| - 0.0011 17.8 1.7 0.02 13.6 0.0 2.7 3 0 0 3 3 3 1 ArgK protein Dynamin_N PF00350.18 gi|282162929|ref|YP_003355314.1| - 0.0017 18.2 0.9 0.81 9.4 0.1 2.8 2 1 1 3 3 3 2 Dynamin family ATP_bind_1 PF03029.12 gi|282162929|ref|YP_003355314.1| - 0.0036 16.8 0.2 1.3 8.5 0.0 2.7 3 0 0 3 3 3 2 Conserved hypothetical ATP binding protein DUF258 PF03193.11 gi|282162929|ref|YP_003355314.1| - 0.008 15.3 0.0 0.016 14.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF258 cobW PF02492.14 gi|282162929|ref|YP_003355314.1| - 0.012 15.0 1.7 1.6 8.1 0.0 3.0 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.22 gi|282162929|ref|YP_003355314.1| - 0.037 13.4 4.8 1.3 8.4 0.0 3.6 3 1 1 4 4 4 0 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|282162929|ref|YP_003355314.1| - 0.056 13.9 0.3 0.26 11.7 0.0 2.2 2 2 0 2 2 2 0 Miro-like protein MCM PF00493.18 gi|282162929|ref|YP_003355314.1| - 0.068 11.9 0.1 0.11 11.2 0.0 1.3 1 0 0 1 1 1 0 MCM2/3/5 family SRPRB PF09439.5 gi|282162929|ref|YP_003355314.1| - 0.27 10.4 2.0 0.27 10.4 0.0 1.8 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF465 PF04325.8 gi|282162929|ref|YP_003355314.1| - 0.96 9.2 8.2 0.96 9.2 3.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF465) DUF3798 PF12683.2 gi|282162931|ref|YP_003355316.1| - 0.039 13.0 0.0 0.051 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) Big_1 PF02369.11 gi|282162932|ref|YP_003355317.1| - 0.0034 17.2 0.1 0.33 10.8 0.0 2.6 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) DUF824 PF05688.6 gi|282162932|ref|YP_003355317.1| - 0.069 12.7 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) CHB_HEX PF03173.8 gi|282162933|ref|YP_003355318.1| - 0.034 13.6 0.2 0.047 13.1 0.1 1.4 1 1 0 1 1 1 0 Putative carbohydrate binding domain Flo11 PF10182.4 gi|282162933|ref|YP_003355318.1| - 0.051 13.1 1.0 0.097 12.2 0.7 1.4 1 0 0 1 1 1 0 Flo11 domain DUF1628 PF07790.6 gi|282162933|ref|YP_003355318.1| - 0.15 12.7 1.4 1.3 9.8 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|282162935|ref|YP_003355320.1| - 1.6 9.5 4.1 4.3 8.1 2.4 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1628) DUF1743 PF08489.6 gi|282162936|ref|YP_003355321.1| - 1.1e-13 50.9 0.1 3.8e-12 45.9 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1743) PTA_PTB PF01515.14 gi|282162937|ref|YP_003355322.1| - 2.8e-09 36.4 0.0 1.9e-06 27.1 0.0 3.0 2 1 1 3 3 3 2 Phosphate acetyl/butaryl transferase DUF218 PF02698.12 gi|282162937|ref|YP_003355322.1| - 0.11 11.9 0.0 0.92 8.9 0.0 2.1 2 0 0 2 2 2 0 DUF218 domain SBP_bac_3 PF00497.15 gi|282162937|ref|YP_003355322.1| - 0.11 11.7 0.2 1.4 8.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 DUF192 PF02643.10 gi|282162938|ref|YP_003355323.1| - 9.2e-22 76.7 0.0 1.1e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 GFO_IDH_MocA_C PF02894.12 gi|282162938|ref|YP_003355323.1| - 0.13 12.0 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Na_Ca_ex PF01699.19 gi|282162939|ref|YP_003355324.1| - 4.3e-22 78.2 25.8 3.3e-13 49.4 4.6 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF1118 PF06549.7 gi|282162939|ref|YP_003355324.1| - 1.3 9.1 6.4 12 6.1 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1118) NAD_synthase PF02540.12 gi|282162940|ref|YP_003355325.1| - 1.5e-77 259.7 0.0 1.8e-77 259.5 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|282162940|ref|YP_003355325.1| - 4.2e-05 22.2 0.0 0.026 13.1 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|282162940|ref|YP_003355325.1| - 6.7e-05 22.5 0.0 0.0001 21.8 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase HTH_23 PF13384.1 gi|282162940|ref|YP_003355325.1| - 0.0099 15.5 0.0 0.075 12.7 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain QueC PF06508.8 gi|282162940|ref|YP_003355325.1| - 0.095 11.9 0.0 0.19 10.9 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC EamA PF00892.15 gi|282162941|ref|YP_003355326.1| - 5.2e-18 65.3 37.6 1.2e-13 51.1 6.3 2.5 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|282162941|ref|YP_003355326.1| - 0.00011 22.3 6.1 0.00011 22.3 4.2 3.2 2 1 2 4 4 4 2 Multidrug resistance efflux transporter DUF2422 PF10337.4 gi|282162941|ref|YP_003355326.1| - 0.34 9.6 7.6 0.2 10.3 4.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2422) NTP_transferase PF00483.18 gi|282162942|ref|YP_003355327.1| - 5.6e-33 114.2 0.0 6.8e-33 113.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|282162942|ref|YP_003355327.1| - 6.1e-10 39.4 0.0 7.9e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|282162942|ref|YP_003355327.1| - 0.016 14.7 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|282162943|ref|YP_003355328.1| - 1.2e-26 93.5 0.0 1.9e-26 92.9 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase MannoseP_isomer PF01050.13 gi|282162943|ref|YP_003355328.1| - 3.4e-09 36.4 0.4 8.7e-09 35.1 0.3 1.6 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase Cupin_2 PF07883.6 gi|282162943|ref|YP_003355328.1| - 6.6e-09 35.1 1.3 6.6e-09 35.1 0.9 2.0 2 0 0 2 2 2 1 Cupin domain NTP_transf_3 PF12804.2 gi|282162943|ref|YP_003355328.1| - 7.3e-07 29.3 0.0 1.3e-06 28.5 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain AraC_binding PF02311.14 gi|282162943|ref|YP_003355328.1| - 0.0004 20.0 0.2 0.00073 19.2 0.2 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Ectoine_synth PF06339.7 gi|282162943|ref|YP_003355328.1| - 0.0024 17.7 0.4 0.0045 16.9 0.3 1.3 1 0 0 1 1 1 1 Ectoine synthase Cupin_3 PF05899.7 gi|282162943|ref|YP_003355328.1| - 0.012 14.9 0.3 0.16 11.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF861) Glycos_transf_2 PF00535.21 gi|282162943|ref|YP_003355328.1| - 0.083 12.5 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Cupin_1 PF00190.17 gi|282162943|ref|YP_003355328.1| - 0.12 11.7 0.0 0.28 10.6 0.0 1.6 1 0 0 1 1 1 0 Cupin Cupin_7 PF12973.2 gi|282162943|ref|YP_003355328.1| - 0.13 12.1 0.1 0.26 11.1 0.1 1.4 1 0 0 1 1 1 0 ChrR Cupin-like domain DUF362 PF04015.7 gi|282162944|ref|YP_003355329.1| - 1.1e-23 83.8 0.1 1.7e-23 83.1 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|282162944|ref|YP_003355329.1| - 1.5e-08 33.8 12.9 1.7e-05 24.1 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282162944|ref|YP_003355329.1| - 9.6e-07 28.3 11.4 8.9e-05 22.1 0.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282162944|ref|YP_003355329.1| - 1.5e-06 28.4 22.6 3.8e-05 23.9 9.4 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282162944|ref|YP_003355329.1| - 5.2e-06 26.1 13.7 1.8e-05 24.4 9.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282162944|ref|YP_003355329.1| - 6.1e-06 26.4 12.5 1.4e-05 25.2 8.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282162944|ref|YP_003355329.1| - 7.7e-06 25.5 12.2 0.00044 20.0 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282162944|ref|YP_003355329.1| - 9.6e-06 25.3 11.8 2.9e-05 23.8 8.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282162944|ref|YP_003355329.1| - 1.4e-05 25.3 8.0 0.023 15.0 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282162944|ref|YP_003355329.1| - 3.8e-05 24.0 8.3 0.0056 17.0 0.4 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282162944|ref|YP_003355329.1| - 0.0001 22.9 9.5 0.0066 17.1 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|282162944|ref|YP_003355329.1| - 0.00011 22.1 12.0 0.029 14.3 1.4 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282162944|ref|YP_003355329.1| - 0.00025 21.1 11.9 0.11 12.8 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain DUF2088 PF09861.4 gi|282162944|ref|YP_003355329.1| - 0.013 14.5 0.3 0.022 13.8 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) Alpha_E3_glycop PF01563.11 gi|282162944|ref|YP_003355329.1| - 0.023 14.5 0.2 0.046 13.5 0.1 1.4 1 0 0 1 1 1 0 Alphavirus E3 glycoprotein Fer4_3 PF12798.2 gi|282162944|ref|YP_003355329.1| - 0.028 14.9 20.2 0.095 13.3 5.0 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|282162944|ref|YP_003355329.1| - 1.1 9.6 13.9 0.41 11.0 1.3 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|282162944|ref|YP_003355329.1| - 1.8 9.1 11.8 1.5e+02 3.0 8.2 2.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain GPI PF06560.6 gi|282162945|ref|YP_003355330.1| - 5.4e-56 188.5 0.0 6.6e-56 188.2 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|282162945|ref|YP_003355330.1| - 0.0017 17.8 0.0 0.0032 16.9 0.0 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|282162945|ref|YP_003355330.1| - 0.048 13.0 0.0 0.073 12.4 0.0 1.2 1 0 0 1 1 1 0 Cupin Rubrerythrin PF02915.12 gi|282162946|ref|YP_003355331.1| - 3.5e-13 50.0 2.5 6.2e-12 46.0 1.6 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|282162946|ref|YP_003355331.1| - 1.7e-07 31.1 0.5 1.6e-06 27.9 0.3 1.9 1 1 0 1 1 1 1 Ferritin-like domain FA_desaturase_2 PF03405.9 gi|282162946|ref|YP_003355331.1| - 0.063 12.0 0.2 0.064 12.0 0.1 1.2 1 1 0 1 1 1 0 Fatty acid desaturase DUF1422 PF07226.6 gi|282162947|ref|YP_003355332.1| - 0.052 13.2 0.7 0.066 12.9 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1422) DUF2798 PF11391.3 gi|282162947|ref|YP_003355332.1| - 0.089 12.5 3.0 0.13 12.0 2.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2798) Trm112p PF03966.11 gi|282162948|ref|YP_003355333.1| - 8.5e-11 42.0 3.4 2.1e-10 40.8 2.4 1.6 1 1 0 1 1 1 1 Trm112p-like protein Elf1 PF05129.8 gi|282162948|ref|YP_003355333.1| - 0.00048 19.7 0.2 0.00048 19.7 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|282162948|ref|YP_003355333.1| - 0.00053 20.2 0.9 0.00062 20.0 0.6 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar DnaJ_CXXCXGXG PF00684.14 gi|282162948|ref|YP_003355333.1| - 0.044 13.8 0.4 0.051 13.6 0.3 1.1 1 0 0 1 1 1 0 DnaJ central domain Prim_Zn_Ribbon PF08273.7 gi|282162948|ref|YP_003355333.1| - 0.052 13.6 0.6 0.081 13.0 0.4 1.4 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Zn_Tnp_IS1595 PF12760.2 gi|282162948|ref|YP_003355333.1| - 0.063 13.0 0.5 0.084 12.6 0.4 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-ZPR1 PF03367.8 gi|282162948|ref|YP_003355333.1| - 0.16 11.1 2.3 0.18 10.9 1.6 1.1 1 0 0 1 1 1 0 ZPR1 zinc-finger domain zf-RING_5 PF14634.1 gi|282162948|ref|YP_003355333.1| - 0.28 10.9 3.9 3.4 7.4 0.1 2.1 2 0 0 2 2 2 0 zinc-RING finger domain Zn-ribbon_8 PF09723.5 gi|282162948|ref|YP_003355333.1| - 0.32 10.9 2.4 5.4 7.0 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|282162948|ref|YP_003355333.1| - 0.34 10.7 3.1 1.3 8.8 2.2 1.8 1 1 0 1 1 1 0 zinc-ribbons Cys_rich_KTR PF14205.1 gi|282162948|ref|YP_003355333.1| - 0.35 10.3 4.2 0.62 9.5 2.9 1.4 1 1 0 1 1 1 0 Cysteine-rich KTR A2L_zn_ribbon PF08792.5 gi|282162948|ref|YP_003355333.1| - 1.1 8.8 4.3 12 5.5 0.3 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Adenylsucc_synt PF00709.16 gi|282162949|ref|YP_003355334.1| - 4.1e-83 279.4 4.6 1.6e-41 142.3 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase CarboxypepD_reg PF13620.1 gi|282162950|ref|YP_003355335.1| - 0.013 15.5 0.0 0.049 13.6 0.1 1.9 2 1 0 2 2 2 0 Carboxypeptidase regulatory-like domain FAD-oxidase_C PF02913.14 gi|282162951|ref|YP_003355336.1| - 1.1e-59 201.8 0.0 1.3e-59 201.4 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|282162951|ref|YP_003355336.1| - 1.1e-45 154.5 0.2 2.2e-45 153.5 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain Lact-deh-memb PF09330.6 gi|282162951|ref|YP_003355336.1| - 0.091 12.1 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 D-lactate dehydrogenase, membrane binding CCG PF02754.11 gi|282162952|ref|YP_003355337.1| - 1.4e-26 92.2 3.1 6e-14 51.8 0.5 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|282162952|ref|YP_003355337.1| - 5.1e-10 39.2 6.8 5.1e-10 39.2 4.7 2.9 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282162952|ref|YP_003355337.1| - 3.4e-08 33.7 8.2 3.4e-08 33.7 5.7 2.9 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282162952|ref|YP_003355337.1| - 1e-06 28.9 5.9 1e-06 28.9 4.1 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282162952|ref|YP_003355337.1| - 2.2e-05 24.1 21.9 4.4e-05 23.1 8.2 3.4 3 2 2 5 5 5 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282162952|ref|YP_003355337.1| - 0.0039 17.5 13.3 0.064 13.6 1.1 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282162952|ref|YP_003355337.1| - 0.01 15.6 13.8 0.24 11.2 0.3 3.8 5 0 0 5 5 5 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282162952|ref|YP_003355337.1| - 0.031 13.8 3.1 0.031 13.8 2.1 3.8 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|282162952|ref|YP_003355337.1| - 0.064 13.6 1.0 0.064 13.6 0.7 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282162952|ref|YP_003355337.1| - 0.2 12.4 16.8 0.19 12.5 8.1 3.2 3 1 2 5 5 5 0 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|282162952|ref|YP_003355337.1| - 0.37 11.0 21.1 0.23 11.7 9.1 3.7 3 1 2 5 5 5 0 4Fe-4S dicluster domain DUF2088 PF09861.4 gi|282162953|ref|YP_003355338.1| - 3.5e-71 238.4 0.0 6.7e-71 237.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|282162953|ref|YP_003355338.1| - 0.0015 18.0 0.0 0.0033 16.9 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF362) DEC-1_N PF04625.8 gi|282162954|ref|YP_003355339.1| - 4.3 5.9 5.6 5.1 5.6 3.9 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Oxidored_molyb PF00174.14 gi|282162955|ref|YP_003355340.1| - 6.9e-41 139.4 0.0 8.5e-41 139.1 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain GDE_N_bis PF14742.1 gi|282162956|ref|YP_003355341.1| - 3.4e-56 189.7 0.0 7e-56 188.6 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.9 gi|282162956|ref|YP_003355341.1| - 3.7e-16 58.8 0.0 1e-15 57.4 0.0 1.6 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Glyco_hydro_63 PF03200.11 gi|282162956|ref|YP_003355341.1| - 0.12 10.1 0.4 0.39 8.4 0.1 1.7 1 1 1 2 2 2 0 Mannosyl oligosaccharide glucosidase DUF4010 PF13194.1 gi|282162957|ref|YP_003355342.1| - 1.6e-61 207.3 23.2 1.6e-61 207.3 16.1 2.9 3 1 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|282162957|ref|YP_003355342.1| - 7e-09 35.6 12.3 7e-09 35.6 8.5 4.4 3 3 2 5 5 5 1 MgtC family Pribosyltran PF00156.22 gi|282162958|ref|YP_003355343.1| - 4.6e-28 97.4 0.1 8.4e-28 96.6 0.1 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|282162958|ref|YP_003355343.1| - 6.7e-05 22.1 0.0 8.9e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|282162958|ref|YP_003355343.1| - 7.3e-05 22.1 0.0 0.00011 21.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase PNP_UDP_1 PF01048.15 gi|282162958|ref|YP_003355343.1| - 0.087 11.7 1.0 6.7 5.6 0.1 2.1 1 1 1 2 2 2 0 Phosphorylase superfamily Herpes_U30 PF04523.8 gi|282162960|ref|YP_003355345.1| - 0.095 10.1 0.0 0.12 9.7 0.0 1.0 1 0 0 1 1 1 0 Herpes virus tegument protein U30 DUF373 PF04123.8 gi|282162961|ref|YP_003355346.1| - 3.3e-115 384.7 4.3 3.8e-115 384.5 3.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) MerC PF03203.9 gi|282162961|ref|YP_003355346.1| - 2.9 8.2 10.1 28 5.0 4.5 3.0 2 1 1 3 3 3 0 MerC mercury resistance protein Colicin_V PF02674.11 gi|282162961|ref|YP_003355346.1| - 3.3 7.5 17.1 1.7 8.4 8.8 2.5 2 1 1 3 3 3 0 Colicin V production protein Myosin_tail_1 PF01576.14 gi|282162962|ref|YP_003355347.1| - 0.047 11.4 50.1 0.079 10.6 34.7 1.4 1 1 0 1 1 1 0 Myosin tail Laminin_II PF06009.7 gi|282162962|ref|YP_003355347.1| - 0.069 12.9 26.2 0.28 10.9 6.4 4.1 1 1 3 4 4 4 0 Laminin Domain II MscS_porin PF12795.2 gi|282162962|ref|YP_003355347.1| - 0.31 10.3 34.5 0.15 11.3 3.3 4.1 1 1 3 4 4 4 0 Mechanosensitive ion channel porin domain Halo_GVPC PF05465.8 gi|282162962|ref|YP_003355347.1| - 0.4 10.6 9.4 7.1 6.6 0.0 4.8 4 1 0 4 4 4 0 Halobacterial gas vesicle protein C (GVPC) repeat DivIVA PF05103.8 gi|282162962|ref|YP_003355347.1| - 3.5 7.6 44.8 0.059 13.4 5.6 4.0 1 1 3 4 4 4 0 DivIVA protein Seryl_tRNA_N PF02403.17 gi|282162962|ref|YP_003355347.1| - 4.2 7.4 51.1 5.3 7.1 8.1 4.5 1 1 4 5 5 5 0 Seryl-tRNA synthetase N-terminal domain HAUS6_N PF14661.1 gi|282162962|ref|YP_003355347.1| - 6.9 5.9 34.4 0.79 9.0 8.5 2.9 2 1 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DUF357 PF04010.8 gi|282162962|ref|YP_003355347.1| - 7.6 6.3 11.4 6.3 6.5 0.1 4.2 3 1 2 5 5 5 0 Protein of unknown function (DUF357) PhoU PF01895.14 gi|282162962|ref|YP_003355347.1| - 8 6.9 18.5 6 7.3 0.9 3.8 2 1 1 3 3 3 0 PhoU domain DUF2935 PF11155.3 gi|282162962|ref|YP_003355347.1| - 8.3 6.5 30.3 1.6 8.8 4.9 3.9 1 1 3 4 4 4 0 Domain of unknown function (DUF2935) HAD PF12710.2 gi|282162963|ref|YP_003355348.1| - 2.6e-16 60.3 0.0 4.1e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|282162963|ref|YP_003355348.1| - 5.3e-15 56.4 0.0 9.2e-14 52.3 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|282162963|ref|YP_003355348.1| - 7e-09 35.6 0.0 8.6e-07 28.7 0.0 2.8 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|282162963|ref|YP_003355348.1| - 1.2e-07 32.0 0.0 1.1e-06 28.9 0.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|282162963|ref|YP_003355348.1| - 0.00017 20.8 0.1 0.013 14.6 0.0 2.3 1 1 0 1 1 1 1 Putative Phosphatase SHMT PF00464.14 gi|282162964|ref|YP_003355349.1| - 1.2e-80 270.8 0.2 1.4e-80 270.6 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|282162964|ref|YP_003355349.1| - 4.8e-09 35.6 0.0 2.2e-08 33.4 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|282162964|ref|YP_003355349.1| - 1.1e-08 34.6 0.1 1.7e-08 33.9 0.1 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.8 gi|282162964|ref|YP_003355349.1| - 2.2e-07 29.9 0.0 6.8e-07 28.3 0.0 1.7 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.14 gi|282162964|ref|YP_003355349.1| - 0.00097 17.9 0.1 0.0012 17.6 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class-V CBS PF00571.23 gi|282162965|ref|YP_003355350.1| - 2.8e-44 148.6 10.2 1.6e-18 66.1 0.2 4.6 4 1 0 4 4 4 4 CBS domain CBS PF00571.23 gi|282162966|ref|YP_003355351.1| - 2e-41 139.5 11.2 3.6e-12 45.8 0.1 4.3 4 0 0 4 4 4 4 CBS domain DUF2786 PF10979.3 gi|282162966|ref|YP_003355351.1| - 0.022 14.4 1.6 1.1 8.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) CBS PF00571.23 gi|282162967|ref|YP_003355352.1| - 2.4e-57 190.4 13.6 2.1e-16 59.4 0.1 4.2 4 0 0 4 4 4 4 CBS domain DUF2228 PF10228.4 gi|282162967|ref|YP_003355352.1| - 0.078 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2228) CBS PF00571.23 gi|282162968|ref|YP_003355353.1| - 1e-53 178.8 7.3 1.2e-13 50.6 0.1 4.1 4 0 0 4 4 4 4 CBS domain GAF_2 PF13185.1 gi|282162968|ref|YP_003355353.1| - 0.057 13.9 0.0 12 6.3 0.0 2.7 2 1 0 2 2 2 0 GAF domain Cache_3 PF14827.1 gi|282162968|ref|YP_003355353.1| - 0.52 10.2 2.9 8.6 6.3 0.0 3.6 4 0 0 4 4 4 0 Sensory domain of two-component sensor kinase CBS PF00571.23 gi|282162969|ref|YP_003355354.1| - 6.2e-29 99.5 4.3 1.1e-15 57.1 0.1 2.2 2 0 0 2 2 2 2 CBS domain RRN7 PF11781.3 gi|282162969|ref|YP_003355354.1| - 0.0063 15.9 1.4 0.012 15.1 1.0 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 MMR_HSR1 PF01926.18 gi|282162970|ref|YP_003355355.1| - 4.5e-17 62.0 0.0 7.5e-17 61.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|282162970|ref|YP_003355355.1| - 1.1e-14 54.2 0.3 2.4e-07 30.3 0.0 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|282162970|ref|YP_003355355.1| - 6.3e-05 22.2 0.0 0.069 12.3 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family Miro PF08477.8 gi|282162970|ref|YP_003355355.1| - 9.3e-05 22.9 0.0 0.0011 19.4 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein FeoB_N PF02421.13 gi|282162970|ref|YP_003355355.1| - 0.00021 20.6 0.4 0.00082 18.6 0.2 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_17 PF13207.1 gi|282162970|ref|YP_003355355.1| - 0.00073 20.3 0.0 0.0012 19.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain Septin PF00735.13 gi|282162970|ref|YP_003355355.1| - 0.00086 18.3 0.0 0.0012 17.9 0.0 1.2 1 0 0 1 1 1 1 Septin Dynamin_N PF00350.18 gi|282162970|ref|YP_003355355.1| - 0.0032 17.2 0.0 0.71 9.6 0.0 2.3 1 1 0 2 2 2 1 Dynamin family AAA_22 PF13401.1 gi|282162970|ref|YP_003355355.1| - 0.0033 17.5 0.0 0.0095 16.0 0.0 1.8 1 1 0 2 2 2 1 AAA domain SRPRB PF09439.5 gi|282162970|ref|YP_003355355.1| - 0.0047 16.1 0.0 0.11 11.6 0.0 2.2 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit UPF0150 PF03681.10 gi|282162970|ref|YP_003355355.1| - 0.0077 15.8 0.1 0.017 14.7 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) AAA PF00004.24 gi|282162970|ref|YP_003355355.1| - 0.0099 16.0 0.1 0.018 15.2 0.1 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|282162970|ref|YP_003355355.1| - 0.012 14.3 0.2 0.037 12.8 0.0 1.8 2 0 0 2 2 2 0 ArgK protein cobW PF02492.14 gi|282162970|ref|YP_003355355.1| - 0.02 14.3 0.0 0.38 10.1 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|282162970|ref|YP_003355355.1| - 0.024 14.9 0.0 0.035 14.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|282162970|ref|YP_003355355.1| - 0.025 14.7 0.0 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Arch_ATPase PF01637.13 gi|282162970|ref|YP_003355355.1| - 0.026 14.2 0.0 0.036 13.7 0.0 1.3 1 1 0 1 1 1 0 Archaeal ATPase NTPase_1 PF03266.10 gi|282162970|ref|YP_003355355.1| - 0.031 14.0 0.1 0.054 13.2 0.1 1.4 1 0 0 1 1 1 0 NTPase Guanylate_kin PF00625.16 gi|282162970|ref|YP_003355355.1| - 0.033 13.6 0.0 0.052 12.9 0.0 1.3 1 1 0 1 1 1 0 Guanylate kinase AAA_25 PF13481.1 gi|282162970|ref|YP_003355355.1| - 0.044 13.1 0.0 0.13 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|282162970|ref|YP_003355355.1| - 0.06 12.5 0.0 0.092 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|282162970|ref|YP_003355355.1| - 0.066 13.5 0.0 0.087 13.1 0.0 1.3 1 0 0 1 1 1 0 ABC transporter NB-ARC PF00931.17 gi|282162970|ref|YP_003355355.1| - 0.13 11.0 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain PPV_E1_C PF00519.12 gi|282162970|ref|YP_003355355.1| - 0.17 10.4 0.0 0.24 9.9 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase DUF2073 PF09846.4 gi|282162971|ref|YP_003355356.1| - 9.9e-35 118.3 0.1 1.2e-34 118.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF2072 PF09845.4 gi|282162972|ref|YP_003355357.1| - 3.5e-35 120.7 0.2 5.8e-35 120.0 0.1 1.3 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) Troponin PF00992.15 gi|282162972|ref|YP_003355357.1| - 0.092 12.8 2.5 0.14 12.1 1.7 1.3 1 0 0 1 1 1 0 Troponin TF_Zn_Ribbon PF08271.7 gi|282162972|ref|YP_003355357.1| - 0.11 11.8 0.8 2.3 7.5 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.14 gi|282162972|ref|YP_003355357.1| - 0.13 11.9 0.3 0.18 11.5 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RNA_POL_M_15KD PF02150.11 gi|282162972|ref|YP_003355357.1| - 0.19 11.4 1.6 0.51 10.0 1.1 1.7 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Rpr2 PF04032.11 gi|282162974|ref|YP_003355359.1| - 4e-21 74.6 0.0 4.8e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|282162974|ref|YP_003355359.1| - 0.00036 20.3 2.3 0.00056 19.6 1.6 1.4 1 0 0 1 1 1 1 Putative zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|282162974|ref|YP_003355359.1| - 0.013 14.9 0.3 0.72 9.3 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain LUC7 PF03194.10 gi|282162974|ref|YP_003355359.1| - 0.042 13.3 0.0 0.051 13.1 0.0 1.1 1 0 0 1 1 1 0 LUC7 N_terminus DZR PF12773.2 gi|282162974|ref|YP_003355359.1| - 0.1 12.4 1.4 0.39 10.5 0.9 1.8 1 1 0 1 1 1 0 Double zinc ribbon DUF1411 PF07199.6 gi|282162974|ref|YP_003355359.1| - 0.15 11.5 0.0 0.19 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1411) zf-ribbon_3 PF13248.1 gi|282162974|ref|YP_003355359.1| - 0.4 9.9 3.0 10 5.4 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|282162974|ref|YP_003355359.1| - 0.59 9.8 4.0 2.4 7.9 0.2 2.5 2 0 0 2 2 2 0 Nudix N-terminal ADK_lid PF05191.9 gi|282162974|ref|YP_003355359.1| - 4.9 6.9 5.9 6.1 6.6 0.9 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid Fer4_10 PF13237.1 gi|282162975|ref|YP_003355360.1| - 8.4e-07 28.6 11.1 1.5e-06 27.9 7.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282162975|ref|YP_003355360.1| - 8.9e-05 23.1 14.2 0.00031 21.4 9.9 1.9 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|282162975|ref|YP_003355360.1| - 0.0001 22.5 12.9 0.00018 21.7 9.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282162975|ref|YP_003355360.1| - 0.00026 21.2 15.2 0.00075 19.8 10.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282162975|ref|YP_003355360.1| - 0.00037 19.9 4.1 0.00037 19.9 2.9 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|282162975|ref|YP_003355360.1| - 0.0007 19.3 4.3 0.0007 19.3 2.9 3.0 2 1 0 2 2 2 1 4Fe-4S binding domain Dehalogenase PF13486.1 gi|282162975|ref|YP_003355360.1| - 0.0023 17.4 0.0 0.0034 16.8 0.0 1.3 1 0 0 1 1 1 1 Reductive dehalogenase subunit Fer4_21 PF14697.1 gi|282162975|ref|YP_003355360.1| - 0.0033 17.2 10.9 0.006 16.4 7.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282162975|ref|YP_003355360.1| - 0.0098 15.9 13.9 0.39 10.7 0.3 2.6 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|282162975|ref|YP_003355360.1| - 0.014 15.2 3.1 0.023 14.6 2.1 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282162975|ref|YP_003355360.1| - 0.35 11.2 12.4 4.8 7.6 4.2 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282162975|ref|YP_003355360.1| - 0.95 9.5 19.4 0.1 12.5 2.5 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain C1_1 PF00130.17 gi|282162975|ref|YP_003355360.1| - 2.1 8.1 7.1 2.5 7.8 1.7 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) CarboxypepD_reg PF13620.1 gi|282162977|ref|YP_003355362.1| - 5.7e-09 35.9 0.4 5.7e-09 35.9 0.3 3.5 3 2 0 3 3 3 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|282162977|ref|YP_003355362.1| - 2.4e-06 27.3 0.3 0.00021 21.1 0.0 2.6 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) Big_3_4 PF13754.1 gi|282162977|ref|YP_003355362.1| - 5.9e-05 23.3 5.5 0.0073 16.6 3.3 3.5 2 1 0 2 2 2 1 Bacterial Ig-like domain (group 3) CHB_HEX_C_1 PF13290.1 gi|282162977|ref|YP_003355362.1| - 0.0012 18.6 1.4 0.0031 17.2 1.0 1.7 1 0 0 1 1 1 1 Chitobiase/beta-hexosaminidase C-terminal domain CHB_HEX_C PF03174.8 gi|282162977|ref|YP_003355362.1| - 0.0047 16.7 1.0 0.012 15.4 0.7 1.7 1 0 0 1 1 1 1 Chitobiase/beta-hexosaminidase C-terminal domain MG1 PF11974.3 gi|282162977|ref|YP_003355362.1| - 0.0057 17.1 0.7 0.16 12.5 0.0 2.8 3 0 0 3 3 3 1 Alpha-2-macroglobulin MG1 domain DUF4480 PF13715.1 gi|282162977|ref|YP_003355362.1| - 0.028 14.4 0.0 0.081 12.9 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4480) Flavin_Reduct PF01613.13 gi|282162978|ref|YP_003355363.1| - 5e-25 88.1 0.0 6.2e-25 87.8 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain PHP PF02811.14 gi|282162979|ref|YP_003355364.1| - 9.1e-14 51.6 0.0 1.7e-13 50.7 0.0 1.6 1 1 0 1 1 1 1 PHP domain TatD_DNase PF01026.16 gi|282162979|ref|YP_003355364.1| - 0.029 13.5 0.0 0.056 12.6 0.0 1.4 1 0 0 1 1 1 0 TatD related DNase E3_binding PF02817.12 gi|282162979|ref|YP_003355364.1| - 0.06 12.9 0.2 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 e3 binding domain DZR PF12773.2 gi|282162980|ref|YP_003355365.1| - 1.1e-09 37.9 8.4 2.1e-05 24.2 1.1 2.3 2 0 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|282162980|ref|YP_003355365.1| - 1.5e-08 33.5 13.8 8.3e-07 28.0 1.7 2.7 2 1 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|282162980|ref|YP_003355365.1| - 9.9e-08 31.2 9.5 0.0002 20.7 1.8 2.6 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|282162980|ref|YP_003355365.1| - 6.2e-07 28.9 14.8 7.1e-07 28.8 2.3 3.3 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 Big_1 PF02369.11 gi|282162980|ref|YP_003355365.1| - 6.4e-05 22.8 9.7 0.052 13.4 0.4 4.2 2 2 1 3 3 3 2 Bacterial Ig-like domain (group 1) BatD PF13584.1 gi|282162980|ref|YP_003355365.1| - 0.00072 18.2 0.5 0.0012 17.5 0.4 1.3 1 0 0 1 1 1 1 Oxygen tolerance DUF4448 PF14610.1 gi|282162980|ref|YP_003355365.1| - 0.0037 16.7 0.1 0.0069 15.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4448) TMEM154 PF15102.1 gi|282162980|ref|YP_003355365.1| - 0.021 14.5 1.7 0.021 14.5 1.2 1.9 2 0 0 2 2 1 0 TMEM154 protein family Peptidase_M56 PF05569.6 gi|282162980|ref|YP_003355365.1| - 0.058 12.3 0.1 0.1 11.5 0.1 1.3 1 0 0 1 1 1 0 BlaR1 peptidase M56 Rifin_STEVOR PF02009.11 gi|282162980|ref|YP_003355365.1| - 0.19 11.3 0.1 0.4 10.2 0.1 1.6 1 0 0 1 1 1 0 Rifin/stevor family Prok-RING_1 PF14446.1 gi|282162980|ref|YP_003355365.1| - 0.57 9.9 9.7 4.9 6.9 0.9 2.3 1 1 0 2 2 2 0 Prokaryotic RING finger family 1 DUF35_N PF12172.3 gi|282162980|ref|YP_003355365.1| - 2.1 8.3 11.9 0.48 10.3 2.4 2.9 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.14 gi|282162980|ref|YP_003355365.1| - 2.5 7.8 8.2 88 2.8 5.7 2.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-tcix PF14952.1 gi|282162980|ref|YP_003355365.1| - 3.2 7.1 8.8 2.1 7.7 1.0 2.6 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ZPR1 PF03367.8 gi|282162980|ref|YP_003355365.1| - 4.1 6.5 5.5 0.47 9.6 0.6 1.8 2 0 0 2 2 2 0 ZPR1 zinc-finger domain PgpA PF04608.8 gi|282162980|ref|YP_003355365.1| - 9.2 6.0 10.1 2.2 8.0 2.8 2.7 2 1 0 2 2 2 0 Phosphatidylglycerophosphatase A Phage_sheath_1 PF04984.9 gi|282162981|ref|YP_003355366.1| - 1.4e-67 228.1 0.3 1.6e-67 228.0 0.2 1.0 1 0 0 1 1 1 1 Phage tail sheath protein Ribosomal_L12 PF00542.14 gi|282162983|ref|YP_003355368.1| - 0.11 12.5 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L7/L12 C-terminal domain Big_1 PF02369.11 gi|282162986|ref|YP_003355371.1| - 6.9e-20 70.8 17.4 9.3e-11 41.5 3.6 2.8 1 1 1 2 2 2 2 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|282162986|ref|YP_003355371.1| - 9.2e-08 32.0 17.2 1.8e-05 24.6 1.8 3.3 4 0 0 4 4 3 2 Carboxypeptidase regulatory-like domain YtkA PF13115.1 gi|282162986|ref|YP_003355371.1| - 8.1e-06 26.1 3.7 0.059 13.7 0.6 3.8 2 1 0 3 3 3 2 YtkA-like DUF824 PF05688.6 gi|282162986|ref|YP_003355371.1| - 0.00028 20.4 1.8 0.17 11.5 0.1 3.1 2 0 0 2 2 2 2 Salmonella repeat of unknown function (DUF824) A2M_N PF01835.14 gi|282162986|ref|YP_003355371.1| - 0.003 17.7 0.7 0.24 11.6 0.1 2.6 1 1 1 2 2 2 1 MG2 domain EMP24_GP25L PF01105.19 gi|282162986|ref|YP_003355371.1| - 0.0061 16.3 1.4 0.0092 15.7 0.3 1.7 2 0 0 2 2 2 1 emp24/gp25L/p24 family/GOLD Y_Y_Y PF07495.8 gi|282162986|ref|YP_003355371.1| - 0.0087 15.7 1.6 1.8 8.3 0.0 3.1 3 1 0 3 3 3 1 Y_Y_Y domain DNA_circ_N PF07157.7 gi|282162986|ref|YP_003355371.1| - 0.012 15.6 0.0 0.034 14.2 0.0 1.7 1 0 0 1 1 1 0 DNA circularisation protein N-terminus Pollen_Ole_e_I PF01190.12 gi|282162986|ref|YP_003355371.1| - 0.035 13.9 0.5 0.21 11.4 0.1 2.3 1 1 1 2 2 2 0 Pollen proteins Ole e I like Big_3 PF07523.7 gi|282162986|ref|YP_003355371.1| - 0.042 13.9 18.0 1.5 8.9 0.6 4.9 4 2 0 4 4 3 0 Bacterial Ig-like domain (group 3) Big_3_4 PF13754.1 gi|282162986|ref|YP_003355371.1| - 0.31 11.3 30.2 0.24 11.7 0.4 5.3 4 1 1 5 5 5 0 Bacterial Ig-like domain (group 3) DUF4442 PF14539.1 gi|282162986|ref|YP_003355371.1| - 0.36 10.7 5.7 10 6.1 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4442) DUF4480 PF13715.1 gi|282162986|ref|YP_003355371.1| - 1.6 8.8 10.5 3 7.9 1.6 3.6 2 1 2 4 4 4 0 Domain of unknown function (DUF4480) PKD PF00801.15 gi|282162986|ref|YP_003355371.1| - 2.5 7.8 7.3 22 4.8 1.1 3.4 2 1 1 3 3 3 0 PKD domain Phage-tail_3 PF13550.1 gi|282162987|ref|YP_003355372.1| - 0.15 11.8 0.0 0.35 10.6 0.0 1.6 1 1 0 1 1 1 0 Putative phage tail protein Phage_base_V PF04717.7 gi|282162988|ref|YP_003355373.1| - 4.7e-09 36.0 0.0 9.3e-09 35.1 0.0 1.5 1 0 0 1 1 1 1 Phage-related baseplate assembly protein DUF3540 PF12059.3 gi|282162988|ref|YP_003355373.1| - 1.4e-06 28.1 2.2 0.055 13.1 0.1 3.2 2 1 1 3 3 3 2 Protein of unknown function (DUF3540) DUF2345 PF10106.4 gi|282162988|ref|YP_003355373.1| - 2.8e-06 27.0 8.4 3.5e-06 26.6 2.5 2.1 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2345) Sarcoglycan_1 PF04790.8 gi|282162988|ref|YP_003355373.1| - 0.00035 19.8 8.9 0.0031 16.7 1.1 2.2 1 1 1 2 2 2 2 Sarcoglycan complex subunit protein CheB_methylest PF01339.12 gi|282162988|ref|YP_003355373.1| - 0.0021 17.5 1.3 0.0074 15.7 0.4 2.1 2 0 0 2 2 2 1 CheB methylesterase JHBP PF06585.6 gi|282162988|ref|YP_003355373.1| - 0.029 13.2 2.9 0.4 9.4 0.7 2.1 1 1 1 2 2 2 0 Haemolymph juvenile hormone binding protein (JHBP) Fe-S_biosyn PF01521.15 gi|282162988|ref|YP_003355373.1| - 0.045 13.7 0.2 0.072 13.0 0.1 1.4 1 0 0 1 1 1 0 Iron-sulphur cluster biosynthesis DUF4402 PF14352.1 gi|282162988|ref|YP_003355373.1| - 0.2 12.1 4.5 0.33 11.4 2.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4402) DUF2807 PF10988.3 gi|282162988|ref|YP_003355373.1| - 0.63 9.5 10.6 2.6 7.5 7.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2807) DNA_pol3_beta PF00712.14 gi|282162988|ref|YP_003355373.1| - 0.97 9.3 5.7 12 5.8 1.5 2.8 1 1 1 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain YabP PF07873.6 gi|282162988|ref|YP_003355373.1| - 1 8.9 4.2 2.1 7.9 0.8 3.0 2 1 0 2 2 2 0 YabP family PAAR_motif PF05488.8 gi|282162989|ref|YP_003355374.1| - 9.6e-13 47.9 10.5 2.1e-08 34.0 0.3 3.1 1 1 1 2 2 2 2 PAAR motif DUF4150 PF13665.1 gi|282162989|ref|YP_003355374.1| - 2.4e-07 30.6 7.0 5.8e-07 29.3 4.7 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4150) GPW_gp25 PF04965.9 gi|282162990|ref|YP_003355375.1| - 1.8e-07 30.5 0.0 2.3e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 Gene 25-like lysozyme DUF2634 PF10934.3 gi|282162990|ref|YP_003355375.1| - 3.8e-06 26.6 0.0 5.3e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2634) GP46 PF07409.7 gi|282162990|ref|YP_003355375.1| - 0.0079 15.5 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 Phage protein GP46 Baseplate_J PF04865.9 gi|282162991|ref|YP_003355376.1| - 1.8e-25 89.6 4.9 4.6e-20 71.9 2.3 2.8 1 1 1 2 2 2 2 Baseplate J-like protein DUF2612 PF11041.3 gi|282162992|ref|YP_003355377.1| - 0.073 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2612) Calx-beta PF03160.9 gi|282162995|ref|YP_003355380.1| - 4.9e-18 64.9 17.6 0.00055 19.8 0.1 7.3 6 1 0 6 6 6 5 Calx-beta domain YtkA PF13115.1 gi|282162995|ref|YP_003355380.1| - 1.3e-07 31.8 10.8 0.16 12.3 0.0 5.3 4 1 0 4 4 4 3 YtkA-like MG1 PF11974.3 gi|282162995|ref|YP_003355380.1| - 3.1e-05 24.4 9.1 0.79 10.3 0.1 4.6 4 0 0 4 4 4 3 Alpha-2-macroglobulin MG1 domain zf-ribbon_3 PF13248.1 gi|282162995|ref|YP_003355380.1| - 0.00016 20.7 4.6 0.00038 19.5 3.2 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Filamin PF00630.14 gi|282162995|ref|YP_003355380.1| - 0.0031 18.0 7.1 0.087 13.4 0.2 5.2 4 2 0 4 4 4 1 Filamin/ABP280 repeat Adeno_knob PF00541.12 gi|282162995|ref|YP_003355380.1| - 0.0033 17.1 2.5 0.015 14.9 0.2 2.7 1 1 0 2 2 2 1 Adenoviral fibre protein (knob domain) DZR PF12773.2 gi|282162995|ref|YP_003355380.1| - 0.0047 16.7 0.9 0.0088 15.8 0.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|282162995|ref|YP_003355380.1| - 0.0058 16.0 4.2 0.013 14.9 2.9 1.6 1 0 0 1 1 1 1 zinc-ribbon domain PLRV_ORF5 PF01690.12 gi|282162995|ref|YP_003355380.1| - 0.019 14.1 5.8 0.033 13.3 4.1 1.3 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein NinF PF05810.7 gi|282162995|ref|YP_003355380.1| - 0.035 13.9 0.0 0.069 12.9 0.0 1.4 1 0 0 1 1 1 0 NinF protein Prok-RING_1 PF14446.1 gi|282162995|ref|YP_003355380.1| - 0.25 11.0 0.2 0.44 10.3 0.2 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C4H2 PF10146.4 gi|282162995|ref|YP_003355380.1| - 0.41 10.6 0.0 0.8 9.6 0.0 1.4 1 0 0 1 1 1 0 Zinc finger-containing protein Big_1 PF02369.11 gi|282162996|ref|YP_003355381.1| - 1.3e-19 69.9 49.5 2.7e-05 24.0 3.8 6.4 6 0 0 6 6 6 5 Bacterial Ig-like domain (group 1) YtkA PF13115.1 gi|282162996|ref|YP_003355381.1| - 1.3e-11 44.6 6.7 0.045 14.1 0.0 5.8 5 0 0 5 5 5 3 YtkA-like DZR PF12773.2 gi|282162996|ref|YP_003355381.1| - 9.7e-08 31.7 13.8 1.6e-07 31.0 9.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon MG1 PF11974.3 gi|282162996|ref|YP_003355381.1| - 1.4e-07 31.9 16.9 0.0034 17.9 0.2 5.2 4 1 1 5 5 4 3 Alpha-2-macroglobulin MG1 domain zinc_ribbon_2 PF13240.1 gi|282162996|ref|YP_003355381.1| - 2.8e-06 26.6 9.8 0.0047 16.3 1.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|282162996|ref|YP_003355381.1| - 5.7e-06 25.3 14.5 0.00074 18.6 0.7 3.1 2 1 0 2 2 2 2 zinc-ribbon domain Cytochrom_D1 PF02239.11 gi|282162996|ref|YP_003355381.1| - 1.4e-05 23.6 0.0 0.89 7.7 0.0 3.3 2 1 1 3 3 3 3 Cytochrome D1 heme domain DUF4198 PF10670.4 gi|282162996|ref|YP_003355381.1| - 5.5e-05 23.2 6.9 0.27 11.2 0.0 4.2 4 0 0 4 4 4 2 Domain of unknown function (DUF4198) Filamin PF00630.14 gi|282162996|ref|YP_003355381.1| - 0.00037 20.9 0.0 1.1 9.8 0.0 4.0 3 2 0 3 3 2 1 Filamin/ABP280 repeat UPF0547 PF10571.4 gi|282162996|ref|YP_003355381.1| - 0.0045 16.6 12.1 0.026 14.2 2.7 2.5 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 DUF4221 PF13970.1 gi|282162996|ref|YP_003355381.1| - 0.029 13.6 0.5 0.91 8.7 0.3 2.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4221) DUF1416 PF07210.7 gi|282162996|ref|YP_003355381.1| - 0.057 13.0 7.5 9.9 5.8 0.0 4.8 5 0 0 5 5 4 0 Protein of unknown function (DUF1416) NOB1_Zn_bind PF08772.6 gi|282162996|ref|YP_003355381.1| - 0.061 13.1 10.7 0.43 10.4 1.2 3.6 3 1 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Rifin_STEVOR PF02009.11 gi|282162996|ref|YP_003355381.1| - 0.45 10.0 0.2 0.89 9.1 0.2 1.5 1 0 0 1 1 1 0 Rifin/stevor family CARDB PF07705.6 gi|282162996|ref|YP_003355381.1| - 0.55 10.3 19.3 1.9 8.5 1.0 5.0 6 0 0 6 6 5 0 CARDB YhfH PF14149.1 gi|282162996|ref|YP_003355381.1| - 2.8 7.8 18.0 3.5 7.4 0.4 3.4 2 2 1 3 3 3 0 YhfH-like protein LVIVD PF08309.6 gi|282162996|ref|YP_003355381.1| - 4 6.5 16.7 7.1 5.7 1.8 4.6 4 0 0 4 4 4 0 LVIVD repeat HypA PF01155.14 gi|282162996|ref|YP_003355381.1| - 6.4 6.5 7.6 2.5e+02 1.3 5.3 2.5 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|282162996|ref|YP_003355381.1| - 7.5 6.3 10.9 15 5.4 0.8 2.4 1 1 0 2 2 2 0 Prokaryotic RING finger family 1 OCD_Mu_crystall PF02423.10 gi|282162997|ref|YP_003355382.1| - 4e-102 341.1 0.6 4.5e-102 341.0 0.4 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family GFO_IDH_MocA PF01408.17 gi|282162997|ref|YP_003355382.1| - 0.0013 19.1 0.1 0.0025 18.3 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Shikimate_DH PF01488.15 gi|282162997|ref|YP_003355382.1| - 0.0027 17.8 0.1 0.0046 17.0 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Rubrerythrin PF02915.12 gi|282162998|ref|YP_003355383.1| - 1.6e-35 122.4 3.6 2.4e-35 121.8 2.5 1.3 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|282162998|ref|YP_003355383.1| - 9.1e-10 38.4 1.4 1.2e-09 38.0 1.0 1.2 1 0 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.7 gi|282162998|ref|YP_003355383.1| - 0.018 14.8 4.2 0.027 14.2 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF892) Zn-ribbon_8 PF09723.5 gi|282162998|ref|YP_003355383.1| - 0.044 13.7 1.3 0.12 12.4 0.9 1.7 1 0 0 1 1 1 0 Zinc ribbon domain UvrD_C PF13361.1 gi|282162998|ref|YP_003355383.1| - 0.052 13.0 0.3 0.077 12.4 0.2 1.1 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain TFIIS_C PF01096.13 gi|282162998|ref|YP_003355383.1| - 0.055 13.1 1.4 1.1 8.9 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) HypA PF01155.14 gi|282162998|ref|YP_003355383.1| - 0.073 12.7 0.2 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|282162998|ref|YP_003355383.1| - 1 9.2 5.2 2.1 8.2 0.2 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|282162998|ref|YP_003355383.1| - 1.1 8.8 4.1 17 5.0 0.1 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF35_N PF12172.3 gi|282162998|ref|YP_003355383.1| - 3.7 7.5 6.5 12 5.9 4.5 1.8 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) V4R PF02830.13 gi|282162999|ref|YP_003355384.1| - 4e-18 65.0 0.8 7.8e-18 64.0 0.5 1.5 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.15 gi|282162999|ref|YP_003355384.1| - 3e-10 39.6 0.1 4.7e-10 38.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|282162999|ref|YP_003355384.1| - 1.5e-09 37.4 0.0 2.9e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|282162999|ref|YP_003355384.1| - 4.2e-06 26.3 0.1 6.6e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|282162999|ref|YP_003355384.1| - 5.9e-05 22.6 0.1 0.00011 21.8 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|282162999|ref|YP_003355384.1| - 8.8e-05 22.1 0.0 0.00017 21.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|282162999|ref|YP_003355384.1| - 0.00069 19.6 0.0 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|282162999|ref|YP_003355384.1| - 0.0041 16.7 0.0 0.0084 15.7 0.0 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Sulfolobus_pRN PF05584.6 gi|282162999|ref|YP_003355384.1| - 0.01 15.7 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_IclR PF09339.5 gi|282162999|ref|YP_003355384.1| - 0.011 15.2 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|282162999|ref|YP_003355384.1| - 0.012 15.0 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|282162999|ref|YP_003355384.1| - 0.022 14.3 0.1 0.048 13.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|282162999|ref|YP_003355384.1| - 0.064 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_40 PF14493.1 gi|282162999|ref|YP_003355384.1| - 0.13 12.4 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain ATC_hydrolase PF14196.1 gi|282162999|ref|YP_003355384.1| - 0.14 12.5 1.8 0.33 11.3 1.3 1.6 1 0 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Trypsin_2 PF13365.1 gi|282163000|ref|YP_003355385.1| - 3.9e-21 75.2 1.2 5.8e-21 74.7 0.8 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|282163000|ref|YP_003355385.1| - 7.3e-17 61.0 0.5 2.7e-16 59.2 0.0 2.1 2 0 0 2 2 2 1 PDZ domain Trypsin PF00089.21 gi|282163000|ref|YP_003355385.1| - 6.8e-15 55.2 0.2 1.7e-14 53.9 0.2 1.6 1 1 0 1 1 1 1 Trypsin PDZ PF00595.19 gi|282163000|ref|YP_003355385.1| - 3.6e-07 30.2 1.2 1e-06 28.8 0.0 2.4 3 0 0 3 3 3 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|282163000|ref|YP_003355385.1| - 5.9e-07 28.3 1.8 0.00051 18.6 0.2 2.2 2 0 0 2 2 2 2 Peptidase S46 Tricorn_PDZ PF14685.1 gi|282163000|ref|YP_003355385.1| - 0.0024 17.6 0.1 0.0069 16.1 0.0 1.8 1 0 0 1 1 1 1 Tricorn protease PDZ domain PDZ_1 PF12812.2 gi|282163000|ref|YP_003355385.1| - 0.0054 16.5 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 PDZ-like domain Peptidase_S7 PF00949.16 gi|282163000|ref|YP_003355385.1| - 0.054 12.8 0.3 0.12 11.7 0.2 1.5 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease Big_3_4 PF13754.1 gi|282163001|ref|YP_003355386.1| - 2.1e-09 37.5 22.9 2.1e-05 24.7 0.5 5.6 5 2 0 5 5 5 3 Bacterial Ig-like domain (group 3) Big_3_3 PF13750.1 gi|282163001|ref|YP_003355386.1| - 0.00025 20.4 0.5 0.96 8.8 0.0 3.5 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 3) Big_3_2 PF12245.3 gi|282163001|ref|YP_003355386.1| - 0.0092 15.5 2.1 0.71 9.4 0.1 3.3 2 2 0 2 2 2 1 Bacterial Ig-like domain (group 3) MGC-24 PF05283.6 gi|282163001|ref|YP_003355386.1| - 0.019 14.7 1.6 0.019 14.7 1.1 2.0 2 0 0 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24) Trypan_PARP PF05887.6 gi|282163001|ref|YP_003355386.1| - 0.03 14.1 0.6 0.055 13.2 0.4 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF3923 PF13061.1 gi|282163001|ref|YP_003355386.1| - 0.052 13.4 0.2 1.9 8.3 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3923) HYR PF02494.11 gi|282163001|ref|YP_003355386.1| - 0.1 12.6 8.5 5.3 7.1 0.0 4.6 5 2 0 5 5 5 0 HYR domain F5_F8_type_C PF00754.20 gi|282163001|ref|YP_003355386.1| - 0.13 12.1 14.1 0.51 10.1 0.1 3.8 4 0 0 4 4 4 0 F5/8 type C domain DUF4140 PF13600.1 gi|282163001|ref|YP_003355386.1| - 0.13 12.6 0.0 0.26 11.7 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) HTH_34 PF13601.1 gi|282163002|ref|YP_003355387.1| - 0.074 13.0 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain AOX PF01786.12 gi|282163002|ref|YP_003355387.1| - 0.14 11.5 1.5 0.18 11.1 1.1 1.2 1 0 0 1 1 1 0 Alternative oxidase DUF624 PF04854.9 gi|282163002|ref|YP_003355387.1| - 1.1 9.1 8.2 0.31 10.9 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function, DUF624 EIIBC-GUT_C PF07663.6 gi|282163003|ref|YP_003355388.1| - 0.12 12.5 5.2 0.79 9.8 0.1 3.0 2 1 1 3 3 3 0 Sorbitol phosphotransferase enzyme II C-terminus DUF1517 PF07466.6 gi|282163003|ref|YP_003355388.1| - 3.8 6.4 4.6 0.44 9.4 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1517) DUF677 PF05055.7 gi|282163003|ref|YP_003355388.1| - 4.8 5.7 4.5 10 4.6 3.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF677) MazG PF03819.12 gi|282163004|ref|YP_003355389.1| - 2e-16 59.6 0.0 2.8e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|282163004|ref|YP_003355389.1| - 0.0032 17.6 0.2 0.0036 17.5 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase dUTPase_2 PF08761.6 gi|282163004|ref|YP_003355389.1| - 0.032 14.3 0.4 0.046 13.8 0.2 1.3 1 1 0 1 1 1 0 dUTPase His_biosynth PF00977.16 gi|282163005|ref|YP_003355390.1| - 9.1e-86 286.8 0.9 1e-85 286.6 0.6 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.10 gi|282163005|ref|YP_003355390.1| - 3.6e-06 26.3 1.2 0.024 13.7 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.12 gi|282163005|ref|YP_003355390.1| - 0.00022 20.1 0.1 0.029 13.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|282163005|ref|YP_003355390.1| - 0.00033 19.8 0.4 0.51 9.3 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.12 gi|282163005|ref|YP_003355390.1| - 0.00037 19.6 0.5 0.34 9.9 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|282163005|ref|YP_003355390.1| - 0.00093 18.5 3.5 0.0045 16.2 0.2 2.7 2 2 1 3 3 3 1 PcrB family IMPDH PF00478.20 gi|282163005|ref|YP_003355390.1| - 0.0037 16.1 1.7 0.071 11.9 0.1 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|282163005|ref|YP_003355390.1| - 0.04 12.9 0.7 0.59 9.1 0.1 2.1 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Yip1 PF04893.12 gi|282163006|ref|YP_003355391.1| - 0.0017 17.9 23.3 0.0017 17.9 16.2 2.5 2 0 0 2 2 2 1 Yip1 domain DUF4013 PF13197.1 gi|282163006|ref|YP_003355391.1| - 0.04 13.2 62.4 0.034 13.4 9.5 3.4 2 1 2 4 4 4 0 Protein of unknown function (DUF4013) ATP-synt_D PF01813.12 gi|282163007|ref|YP_003355392.1| - 9.3e-57 191.7 10.6 1e-56 191.5 7.3 1.0 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.20 gi|282163008|ref|YP_003355393.1| - 1.3e-59 201.2 0.0 1.7e-59 200.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|282163008|ref|YP_003355393.1| - 1.7e-15 57.4 0.1 3.2e-15 56.5 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|282163008|ref|YP_003355393.1| - 6.2e-13 48.7 0.6 1.4e-12 47.6 0.4 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|282163008|ref|YP_003355393.1| - 4.6e-06 26.4 0.6 1.5e-05 24.8 0.4 1.9 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|282163009|ref|YP_003355394.1| - 3.6e-98 327.3 0.0 7.5e-98 326.2 0.0 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|282163009|ref|YP_003355394.1| - 4.2e-20 72.3 1.5 8e-20 71.4 1.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|282163009|ref|YP_003355394.1| - 2e-13 50.3 1.1 2e-13 50.3 0.7 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain DUF1932 PF09130.6 gi|282163009|ref|YP_003355394.1| - 0.0032 17.1 1.6 0.47 10.2 0.2 2.8 2 0 0 2 2 2 2 Domain of unknown function (DUF1932) AAA_22 PF13401.1 gi|282163009|ref|YP_003355394.1| - 0.02 15.0 0.0 0.079 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain Peptidase_M23 PF01551.17 gi|282163009|ref|YP_003355394.1| - 0.059 13.4 0.1 4.7 7.3 0.0 2.6 2 0 0 2 2 2 0 Peptidase family M23 ATP-synt_F PF01990.12 gi|282163010|ref|YP_003355395.1| - 2.4e-19 69.4 0.3 2.8e-19 69.2 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.11 gi|282163011|ref|YP_003355396.1| - 1.1e-87 294.2 0.6 1.3e-87 294.1 0.4 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.13 gi|282163012|ref|YP_003355397.1| - 3.8e-28 98.1 13.9 2.3e-27 95.5 9.6 1.8 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|282163012|ref|YP_003355397.1| - 0.0077 16.0 13.6 0.014 15.2 9.4 1.4 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) Phage_int_SAM_5 PF13102.1 gi|282163012|ref|YP_003355397.1| - 0.092 12.7 3.2 0.12 12.3 2.2 1.3 1 0 0 1 1 1 0 Phage integrase SAM-like domain ATP-synt_C PF00137.16 gi|282163013|ref|YP_003355398.1| - 2.4e-19 68.9 14.8 2.6e-19 68.8 10.3 1.0 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.14 gi|282163014|ref|YP_003355399.1| - 4e-91 306.0 14.5 1.4e-55 188.5 0.3 3.1 2 1 1 3 3 3 3 V-type ATPase 116kDa subunit family ATP-synt_B PF00430.13 gi|282163015|ref|YP_003355400.1| - 8.9e-05 22.2 27.0 0.0016 18.2 19.3 1.9 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF2690 PF10901.3 gi|282163015|ref|YP_003355400.1| - 0.15 12.0 4.4 0.19 11.7 3.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2690) HrpE PF06188.7 gi|282163015|ref|YP_003355400.1| - 0.2 11.3 12.2 0.25 11.0 8.5 1.2 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Peptidase_A3 PF02160.10 gi|282163015|ref|YP_003355400.1| - 0.3 10.6 1.9 0.36 10.4 1.3 1.1 1 0 0 1 1 1 0 Cauliflower mosaic virus peptidase (A3) TEBP_beta PF07404.6 gi|282163015|ref|YP_003355400.1| - 0.79 8.7 10.7 0.86 8.6 7.4 1.0 1 0 0 1 1 1 0 Telomere-binding protein beta subunit (TEBP beta) DNA_pol_viral_N PF00242.12 gi|282163015|ref|YP_003355400.1| - 1.7 7.5 4.1 1.8 7.4 2.9 1.0 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain AAA_13 PF13166.1 gi|282163015|ref|YP_003355400.1| - 2 6.7 12.1 2.1 6.6 8.4 1.0 1 0 0 1 1 1 0 AAA domain Cytochrom_C_2 PF01322.15 gi|282163015|ref|YP_003355400.1| - 2.4 8.6 16.9 3 8.3 11.7 1.1 1 0 0 1 1 1 0 Cytochrome C' Mnd1 PF03962.10 gi|282163015|ref|YP_003355400.1| - 3 7.4 10.7 3.8 7.1 7.4 1.1 1 0 0 1 1 1 0 Mnd1 family NOZZLE PF08744.5 gi|282163015|ref|YP_003355400.1| - 4.6 6.5 5.8 1.7 7.9 1.6 1.8 1 1 1 2 2 2 0 Plant transcription factor NOZZLE DUF572 PF04502.8 gi|282163015|ref|YP_003355400.1| - 4.9 6.2 11.9 5.1 6.2 8.3 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF572) DUF913 PF06025.7 gi|282163015|ref|YP_003355400.1| - 5.5 5.6 6.1 6.6 5.3 4.2 1.0 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) DDHD PF02862.12 gi|282163015|ref|YP_003355400.1| - 6.4 6.4 7.2 8.4 6.1 5.0 1.1 1 0 0 1 1 1 0 DDHD domain DUF4604 PF15377.1 gi|282163015|ref|YP_003355400.1| - 7.9 6.6 18.9 9.7 6.3 13.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4604) DUF883 PF05957.8 gi|282163015|ref|YP_003355400.1| - 8.3 6.8 18.5 17 5.9 3.5 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF4010 PF13194.1 gi|282163016|ref|YP_003355401.1| - 1.5e-51 174.6 21.6 1.5e-51 174.6 15.0 3.0 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|282163016|ref|YP_003355401.1| - 1.8e-13 50.5 7.7 1.8e-13 50.5 5.3 3.8 1 1 2 4 4 4 1 MgtC family DHHA1 PF02272.14 gi|282163018|ref|YP_003355403.1| - 7.9e-10 38.2 1.7 2.1e-09 36.9 1.1 1.8 1 1 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|282163018|ref|YP_003355403.1| - 3.9e-05 23.3 0.3 0.00035 20.2 0.2 2.1 1 1 0 1 1 1 1 DHH family SpoIIAA-like PF11964.3 gi|282163018|ref|YP_003355403.1| - 0.017 15.3 0.2 0.38 11.0 0.0 2.6 1 1 0 2 2 2 0 SpoIIAA-like Pribosyltran_N PF13793.1 gi|282163019|ref|YP_003355404.1| - 3.7e-26 91.1 0.0 3.2e-22 78.4 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|282163019|ref|YP_003355404.1| - 2.5e-15 56.2 0.6 2e-13 50.1 0.2 2.7 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|282163019|ref|YP_003355404.1| - 1.5e-10 41.1 0.2 4.5e-10 39.5 0.0 1.8 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|282163019|ref|YP_003355404.1| - 0.0014 17.8 0.0 0.0025 17.0 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|282163019|ref|YP_003355404.1| - 0.0061 15.8 0.0 0.011 15.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase ADH_zinc_N PF00107.21 gi|282163019|ref|YP_003355404.1| - 0.025 14.1 0.2 1.7 8.2 0.0 3.3 2 2 1 3 3 3 0 Zinc-binding dehydrogenase PRTase_3 PF15610.1 gi|282163019|ref|YP_003355404.1| - 0.18 10.7 0.0 0.27 10.1 0.0 1.2 1 0 0 1 1 1 0 PRTase ComF-like GTP_EFTU PF00009.22 gi|282163020|ref|YP_003355405.1| - 4.2e-43 146.9 0.2 6.6e-43 146.3 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|282163020|ref|YP_003355405.1| - 3.7e-31 107.0 0.4 7.7e-31 105.9 0.3 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|282163020|ref|YP_003355405.1| - 0.00029 20.9 0.6 0.00089 19.3 0.4 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|282163020|ref|YP_003355405.1| - 0.003 17.0 3.8 2 7.9 0.5 3.1 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|282163020|ref|YP_003355405.1| - 0.013 15.4 0.0 0.032 14.1 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|282163020|ref|YP_003355405.1| - 0.033 13.4 0.8 5.5 6.2 0.2 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B DUF258 PF03193.11 gi|282163020|ref|YP_003355405.1| - 7.7 5.6 6.3 8.9 5.4 2.1 2.4 1 1 1 2 2 2 0 Protein of unknown function, DUF258 Fcf1 PF04900.7 gi|282163021|ref|YP_003355406.1| - 5.5e-12 45.6 0.1 7e-12 45.3 0.1 1.1 1 0 0 1 1 1 1 Fcf1 RNase_Zc3h12a PF11977.3 gi|282163021|ref|YP_003355406.1| - 0.0014 18.5 0.1 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain PIN_4 PF13638.1 gi|282163021|ref|YP_003355406.1| - 0.025 14.6 0.1 0.091 12.8 0.1 1.8 1 1 0 1 1 1 0 PIN domain UPF0278 PF08745.6 gi|282163021|ref|YP_003355406.1| - 0.042 13.0 0.1 0.27 10.4 0.0 1.9 1 1 1 2 2 2 0 UPF0278 family SHS2_Rpb7-N PF03876.12 gi|282163022|ref|YP_003355407.1| - 1e-19 70.3 0.3 2.3e-19 69.2 0.1 1.6 2 0 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|282163022|ref|YP_003355407.1| - 6.2e-11 42.2 0.3 1.7e-10 40.8 0.2 1.8 1 1 0 1 1 1 1 S1 RNA binding domain Lactamase_B_2 PF12706.2 gi|282163023|ref|YP_003355408.1| - 9e-07 28.6 0.2 1.3e-06 28.0 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|282163023|ref|YP_003355408.1| - 1.4e-05 24.8 2.4 3.6e-05 23.4 1.5 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|282163023|ref|YP_003355408.1| - 0.019 14.6 0.1 0.093 12.4 0.0 1.9 2 0 0 2 2 2 0 Beta-lactamase superfamily domain HATPase_c PF02518.21 gi|282163024|ref|YP_003355409.1| - 9.2e-18 63.9 0.0 1.7e-17 63.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|282163024|ref|YP_003355409.1| - 1.1e-17 64.3 0.0 2.8e-11 43.7 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|282163024|ref|YP_003355409.1| - 6.5e-15 54.9 0.0 1.8e-10 40.7 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|282163024|ref|YP_003355409.1| - 4.7e-12 45.6 0.0 6.6e-07 29.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|282163024|ref|YP_003355409.1| - 9.1e-10 38.0 0.0 2.5e-05 23.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|282163024|ref|YP_003355409.1| - 2.6e-05 24.2 0.0 0.00077 19.4 0.0 2.4 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|282163024|ref|YP_003355409.1| - 0.00094 19.1 0.2 0.0024 17.8 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain YhhN PF07947.9 gi|282163024|ref|YP_003355409.1| - 0.016 14.6 1.9 0.027 13.8 1.3 1.3 1 0 0 1 1 1 0 YhhN-like protein HATPase_c_5 PF14501.1 gi|282163024|ref|YP_003355409.1| - 0.022 14.4 0.0 0.056 13.1 0.0 1.6 1 0 0 1 1 1 0 GHKL domain HATPase_c_2 PF13581.1 gi|282163024|ref|YP_003355409.1| - 0.023 14.4 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|282163024|ref|YP_003355409.1| - 0.097 12.6 0.0 0.49 10.4 0.0 2.3 2 0 0 2 2 2 0 PAS fold DUF3278 PF11683.3 gi|282163024|ref|YP_003355409.1| - 0.16 11.9 2.8 0.32 10.9 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3278) 7TMR-DISM_7TM PF07695.6 gi|282163024|ref|YP_003355409.1| - 0.3 10.7 9.0 0.15 11.6 4.7 1.6 2 0 0 2 2 2 0 7TM diverse intracellular signalling Cupin_2 PF07883.6 gi|282163025|ref|YP_003355410.1| - 2.4e-14 52.5 0.0 4.2e-14 51.8 0.0 1.4 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|282163025|ref|YP_003355410.1| - 2.4e-07 30.4 0.0 2.7e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Ectoine_synth PF06339.7 gi|282163025|ref|YP_003355410.1| - 0.00014 21.7 0.0 0.00018 21.4 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase AraC_binding PF02311.14 gi|282163025|ref|YP_003355410.1| - 0.0003 20.4 0.1 0.00037 20.1 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|282163025|ref|YP_003355410.1| - 0.00071 19.0 0.0 0.0012 18.2 0.0 1.4 1 1 0 1 1 1 1 Cupin Lactamase_B PF00753.22 gi|282163026|ref|YP_003355411.1| - 4.8e-12 45.9 0.2 7.3e-12 45.3 0.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|282163026|ref|YP_003355411.1| - 1.7e-06 27.7 0.1 2.2e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|282163026|ref|YP_003355411.1| - 0.014 15.1 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain HATPase_c PF02518.21 gi|282163027|ref|YP_003355412.1| - 1e-20 73.4 0.1 3.3e-20 71.8 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|282163027|ref|YP_003355412.1| - 3.6e-20 71.8 0.0 6.4e-19 67.8 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|282163027|ref|YP_003355412.1| - 5e-12 46.1 0.0 1e-11 45.1 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|282163027|ref|YP_003355412.1| - 3e-07 30.1 0.0 1.1e-06 28.4 0.0 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|282163027|ref|YP_003355412.1| - 0.00032 20.4 0.1 0.0055 16.4 0.0 2.6 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282163027|ref|YP_003355412.1| - 0.0011 18.5 0.0 0.0077 15.9 0.0 2.3 1 1 0 1 1 1 1 GHKL domain PAS_8 PF13188.1 gi|282163027|ref|YP_003355412.1| - 0.0076 16.0 0.0 0.021 14.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|282163027|ref|YP_003355412.1| - 0.014 15.4 0.0 0.028 14.4 0.0 1.6 1 0 0 1 1 1 0 PAS fold Peptidase_M48 PF01435.13 gi|282163028|ref|YP_003355413.1| - 5.7e-19 68.5 0.0 7.8e-16 58.3 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M48 Peptidase_M56 PF05569.6 gi|282163028|ref|YP_003355413.1| - 0.0023 16.9 0.7 0.0065 15.4 0.1 2.1 1 1 1 2 2 2 1 BlaR1 peptidase M56 HEAT_2 PF13646.1 gi|282163030|ref|YP_003355415.1| - 4.2e-17 62.1 0.6 7.2e-17 61.4 0.4 1.4 1 1 0 1 1 1 1 HEAT repeats HEAT PF02985.17 gi|282163030|ref|YP_003355415.1| - 2.8e-10 39.4 0.4 3.4e-06 26.6 0.0 3.1 3 0 0 3 3 3 2 HEAT repeat HEAT_PBS PF03130.11 gi|282163030|ref|YP_003355415.1| - 2.4e-09 36.7 9.5 4.9e-05 23.4 0.2 3.5 5 0 0 5 5 5 2 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|282163030|ref|YP_003355415.1| - 5.2e-07 29.9 6.8 3.9e-06 27.1 0.5 3.1 3 1 1 4 4 4 1 HEAT-like repeat Arm PF00514.18 gi|282163030|ref|YP_003355415.1| - 5.3e-05 22.8 0.9 0.0031 17.2 0.0 3.1 3 1 1 4 4 4 1 Armadillo/beta-catenin-like repeat Aconitase_B_N PF11791.3 gi|282163030|ref|YP_003355415.1| - 0.0071 16.1 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Aconitate B N-terminal domain UPF0104 PF03706.8 gi|282163030|ref|YP_003355415.1| - 0.02 14.1 0.2 0.027 13.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) RseC_MucC PF04246.7 gi|282163030|ref|YP_003355415.1| - 0.047 13.2 0.2 0.071 12.6 0.1 1.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC TctB PF07331.6 gi|282163030|ref|YP_003355415.1| - 0.064 12.9 0.3 0.084 12.5 0.2 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family CbiX PF01903.12 gi|282163031|ref|YP_003355416.1| - 2.7e-25 88.5 0.0 3.2e-25 88.2 0.0 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|282163031|ref|YP_003355416.1| - 1.5e-06 27.4 0.0 1.8e-06 27.2 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|282163031|ref|YP_003355416.1| - 3.8e-05 22.8 0.0 4.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Ferrochelatase Mur_ligase_M PF08245.7 gi|282163032|ref|YP_003355417.1| - 0.00024 21.2 0.0 0.00031 20.8 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Oxidored_nitro PF00148.14 gi|282163033|ref|YP_003355418.1| - 7.1e-18 64.4 0.2 9.8e-18 63.9 0.1 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Peptidase_M28 PF04389.12 gi|282163033|ref|YP_003355418.1| - 0.031 14.0 0.1 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M28 CbiA PF01656.18 gi|282163033|ref|YP_003355418.1| - 0.12 11.7 0.0 4.9 6.5 0.0 2.4 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|282163034|ref|YP_003355419.1| - 7.2e-89 297.5 1.4 8.2e-89 297.4 1.0 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|282163034|ref|YP_003355419.1| - 6e-11 42.1 0.0 9.5e-11 41.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|282163034|ref|YP_003355419.1| - 5.5e-05 22.3 1.1 0.0001 21.4 0.4 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|282163034|ref|YP_003355419.1| - 0.00017 21.5 0.0 0.00042 20.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|282163034|ref|YP_003355419.1| - 0.0024 17.0 0.4 0.071 12.1 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ CPSase_L_chain PF00289.17 gi|282163034|ref|YP_003355419.1| - 0.0038 17.3 0.3 4.2 7.5 0.0 2.7 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ArgK PF03308.11 gi|282163034|ref|YP_003355419.1| - 0.015 14.1 0.9 0.026 13.3 0.1 1.7 3 0 0 3 3 3 0 ArgK protein AAA_26 PF13500.1 gi|282163034|ref|YP_003355419.1| - 0.089 12.3 0.4 0.3 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|282163034|ref|YP_003355419.1| - 0.11 12.0 0.3 0.18 11.3 0.2 1.2 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|282163034|ref|YP_003355419.1| - 0.11 11.9 0.2 0.17 11.2 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_16 PF13191.1 gi|282163034|ref|YP_003355419.1| - 0.12 12.2 0.0 0.42 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.17 gi|282163034|ref|YP_003355419.1| - 0.22 10.9 0.8 0.28 10.6 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain GATase_3 PF07685.9 gi|282163035|ref|YP_003355420.1| - 8.2e-31 106.7 0.1 1.4e-30 105.9 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|282163035|ref|YP_003355420.1| - 1.7e-23 83.0 0.1 2.7e-23 82.4 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|282163035|ref|YP_003355420.1| - 4.8e-18 65.4 0.3 3.1e-13 49.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain SNO PF01174.14 gi|282163035|ref|YP_003355420.1| - 0.004 16.7 0.0 0.0081 15.8 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Apolipoprotein PF01442.13 gi|282163036|ref|YP_003355421.1| - 8e-06 25.4 13.3 8e-06 25.4 9.2 9.8 1 1 6 8 8 8 5 Apolipoprotein A1/A4/E domain SF-assemblin PF06705.6 gi|282163036|ref|YP_003355421.1| - 8.9e-06 25.0 20.0 8.9e-06 25.0 13.9 9.6 1 1 8 10 10 10 2 SF-assemblin/beta giardin IncA PF04156.9 gi|282163036|ref|YP_003355421.1| - 1.4e-05 24.8 3.4 1.4e-05 24.8 2.3 10.7 2 2 7 9 9 9 3 IncA protein Filament PF00038.16 gi|282163036|ref|YP_003355421.1| - 1.9e-05 24.3 15.7 1.9e-05 24.3 10.9 7.6 1 1 3 6 6 6 4 Intermediate filament protein AAA_13 PF13166.1 gi|282163036|ref|YP_003355421.1| - 0.00016 20.3 16.0 0.00016 20.3 11.1 8.3 1 1 8 9 9 9 4 AAA domain Atg14 PF10186.4 gi|282163036|ref|YP_003355421.1| - 0.00022 20.2 4.3 0.00022 20.2 3.0 10.0 2 2 5 9 9 9 2 UV radiation resistance protein and autophagy-related subunit 14 Apc5 PF12862.2 gi|282163036|ref|YP_003355421.1| - 0.014 15.2 0.1 0.11 12.3 0.1 2.6 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 LPP PF04728.8 gi|282163036|ref|YP_003355421.1| - 5.2 6.9 37.5 0.47 10.2 0.1 10.1 8 2 4 12 12 12 0 Lipoprotein leucine-zipper Baculo_PEP_C PF04513.7 gi|282163037|ref|YP_003355422.1| - 0.018 14.8 1.3 0.14 11.9 0.1 2.1 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3450 PF11932.3 gi|282163037|ref|YP_003355422.1| - 0.04 13.1 8.1 0.012 14.8 2.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Ax_dynein_light PF10211.4 gi|282163037|ref|YP_003355422.1| - 0.069 12.9 9.3 0.062 13.1 2.4 2.2 1 1 1 2 2 2 0 Axonemal dynein light chain BLOC1_2 PF10046.4 gi|282163037|ref|YP_003355422.1| - 0.13 12.4 13.4 1 9.5 0.6 3.2 2 1 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spectrin PF00435.16 gi|282163037|ref|YP_003355422.1| - 0.36 11.1 11.0 0.074 13.3 3.9 2.3 2 2 0 2 2 2 0 Spectrin repeat DUF1366 PF07104.6 gi|282163037|ref|YP_003355422.1| - 0.76 9.3 8.2 2.3 7.8 0.5 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1366) NPV_P10 PF05531.7 gi|282163037|ref|YP_003355422.1| - 1.7 8.9 6.2 8 6.7 0.4 2.9 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein ADIP PF11559.3 gi|282163037|ref|YP_003355422.1| - 1.9 8.4 10.6 0.45 10.4 4.4 2.0 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF4404 PF14357.1 gi|282163037|ref|YP_003355422.1| - 2 8.8 12.0 0.6 10.5 2.8 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) DUF2229 PF09989.4 gi|282163037|ref|YP_003355422.1| - 3.4 7.0 10.8 1.1 8.6 1.0 2.1 1 1 1 2 2 2 0 CoA enzyme activase uncharacterised domain (DUF2229) TPR_MLP1_2 PF07926.7 gi|282163037|ref|YP_003355422.1| - 4.8 6.9 15.8 1.3 8.7 4.6 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Med9 PF07544.8 gi|282163037|ref|YP_003355422.1| - 5 6.9 10.0 1.8 8.3 2.4 3.1 2 2 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 V-ATPase_G PF03179.10 gi|282163037|ref|YP_003355422.1| - 5.4 7.3 15.4 1.4 9.2 1.3 3.2 1 1 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit DUF2951 PF11166.3 gi|282163037|ref|YP_003355422.1| - 7.1 6.5 10.6 11 5.9 0.3 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF2951) Phage_GPO PF05929.6 gi|282163037|ref|YP_003355422.1| - 8.9 5.4 12.6 5.7 6.1 2.0 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Ribosomal_L16 PF00252.13 gi|282163038|ref|YP_003355423.1| - 6.8e-35 119.7 0.0 7.9e-35 119.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e PYNP_C PF07831.8 gi|282163038|ref|YP_003355423.1| - 0.024 14.1 0.0 0.04 13.3 0.0 1.4 1 0 0 1 1 1 0 Pyrimidine nucleoside phosphorylase C-terminal domain DUF4406 PF14359.1 gi|282163038|ref|YP_003355423.1| - 0.043 13.9 0.0 0.085 12.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4406) THUMP PF02926.12 gi|282163038|ref|YP_003355423.1| - 0.1 12.4 0.0 0.65 9.8 0.0 1.9 1 1 1 2 2 2 0 THUMP domain Fasciclin PF02469.17 gi|282163039|ref|YP_003355424.1| - 3e-32 111.3 0.0 3.9e-32 110.9 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain eIF-5_eIF-2B PF01873.12 gi|282163040|ref|YP_003355425.1| - 1.1e-35 122.0 0.0 1.8e-35 121.3 0.0 1.3 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|282163040|ref|YP_003355425.1| - 4.9e-12 45.4 1.4 1e-11 44.4 1.0 1.5 1 0 0 1 1 1 1 TRAM domain Zn-ribbon_8 PF09723.5 gi|282163040|ref|YP_003355425.1| - 0.0076 16.1 1.1 0.013 15.4 0.8 1.4 1 0 0 1 1 1 1 Zinc ribbon domain DUF2387 PF09526.5 gi|282163040|ref|YP_003355425.1| - 0.088 12.7 1.5 0.71 9.8 1.0 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) GCC2_GCC3 PF07699.8 gi|282163040|ref|YP_003355425.1| - 0.45 10.1 2.3 9.3 5.9 1.6 2.2 1 1 0 1 1 1 0 GCC2 and GCC3 ZF-HD_dimer PF04770.7 gi|282163040|ref|YP_003355425.1| - 0.47 10.5 3.3 2.3 8.3 2.3 2.1 1 1 0 1 1 1 0 ZF-HD protein dimerisation region DNA_RNApol_7kD PF03604.8 gi|282163040|ref|YP_003355425.1| - 0.61 9.6 4.2 4.2 6.9 3.1 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TatD_DNase PF01026.16 gi|282163041|ref|YP_003355426.1| - 1e-23 83.8 0.0 1.2e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|282163041|ref|YP_003355426.1| - 0.057 12.9 0.0 0.089 12.3 0.0 1.4 1 1 0 1 1 1 0 Amidohydrolase HycI PF01750.13 gi|282163044|ref|YP_003355429.1| - 3.2e-29 101.0 0.9 4.1e-29 100.7 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease AA_kinase PF00696.23 gi|282163045|ref|YP_003355430.1| - 1.2e-33 116.6 1.5 1.4e-33 116.4 1.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family Rhomboid PF01694.17 gi|282163047|ref|YP_003355432.1| - 1.4e-31 109.4 16.7 1.4e-31 109.4 11.6 1.6 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|282163047|ref|YP_003355432.1| - 2.4e-13 49.6 5.0 3.4e-13 49.2 3.5 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|282163047|ref|YP_003355432.1| - 0.00058 20.1 0.1 0.00058 20.1 0.0 2.3 2 1 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) BPL_LplA_LipB PF03099.14 gi|282163048|ref|YP_003355433.1| - 9.8e-22 77.2 0.1 1.6e-21 76.6 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|282163048|ref|YP_003355433.1| - 1.5e-16 59.7 0.0 3.5e-16 58.5 0.0 1.7 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|282163048|ref|YP_003355433.1| - 8.3e-13 47.8 0.3 1.7e-12 46.8 0.2 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|282163048|ref|YP_003355433.1| - 8.1e-07 28.3 0.0 1.8e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|282163048|ref|YP_003355433.1| - 0.00063 19.4 0.1 0.0026 17.4 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|282163048|ref|YP_003355433.1| - 0.0018 17.8 0.0 0.005 16.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|282163048|ref|YP_003355433.1| - 0.0039 17.0 0.0 0.012 15.4 0.0 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|282163048|ref|YP_003355433.1| - 0.0046 17.0 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|282163048|ref|YP_003355433.1| - 0.005 16.3 0.0 0.013 15.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|282163048|ref|YP_003355433.1| - 0.014 14.8 0.0 0.032 13.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|282163048|ref|YP_003355433.1| - 0.036 13.7 0.0 0.084 12.5 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|282163048|ref|YP_003355433.1| - 0.065 12.7 0.0 0.23 11.0 0.0 2.1 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_22 PF13309.1 gi|282163048|ref|YP_003355433.1| - 0.077 12.7 0.0 0.32 10.7 0.0 2.1 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.7 gi|282163048|ref|YP_003355433.1| - 0.097 12.2 0.0 0.24 10.9 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_36 PF13730.1 gi|282163048|ref|YP_003355433.1| - 0.12 12.5 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain BioY PF02632.9 gi|282163049|ref|YP_003355434.1| - 1.6e-46 157.6 23.8 2.7e-46 156.9 16.5 1.3 1 0 0 1 1 1 1 BioY family DUF3816 PF12822.2 gi|282163049|ref|YP_003355434.1| - 0.00031 20.6 26.1 0.00069 19.5 18.2 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) ABC_tran PF00005.22 gi|282163050|ref|YP_003355435.1| - 4.4e-27 95.0 0.0 6.7e-27 94.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|282163050|ref|YP_003355435.1| - 9.3e-08 31.5 0.0 1.6e-06 27.4 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|282163050|ref|YP_003355435.1| - 7.2e-07 29.4 0.0 0.0019 18.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|282163050|ref|YP_003355435.1| - 3.5e-05 23.4 0.0 0.11 11.9 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|282163050|ref|YP_003355435.1| - 0.00014 21.2 0.0 0.00029 20.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|282163050|ref|YP_003355435.1| - 0.022 13.9 0.0 0.032 13.3 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.1 gi|282163050|ref|YP_003355435.1| - 0.032 14.5 0.0 0.04 14.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|282163050|ref|YP_003355435.1| - 0.098 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|282163051|ref|YP_003355436.1| - 6.8e-20 71.7 0.0 1.5e-19 70.6 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163051|ref|YP_003355436.1| - 3.8e-14 53.3 0.0 3.3e-09 37.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|282163051|ref|YP_003355436.1| - 8.2e-07 28.4 0.2 0.00048 19.4 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|282163051|ref|YP_003355436.1| - 2.7e-05 23.5 0.9 7e-05 22.2 0.4 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|282163051|ref|YP_003355436.1| - 0.00011 22.2 0.1 0.00017 21.6 0.1 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|282163051|ref|YP_003355436.1| - 0.00035 20.1 0.7 0.041 13.3 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|282163051|ref|YP_003355436.1| - 0.0029 17.0 0.5 0.022 14.1 0.1 2.2 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|282163051|ref|YP_003355436.1| - 0.0045 16.1 0.0 0.0087 15.2 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|282163051|ref|YP_003355436.1| - 0.027 13.5 0.1 0.05 12.6 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.1 gi|282163051|ref|YP_003355436.1| - 0.049 13.3 0.4 0.22 11.3 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain SbcCD_C PF13558.1 gi|282163051|ref|YP_003355436.1| - 0.059 13.2 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|282163051|ref|YP_003355436.1| - 0.082 13.2 0.3 0.12 12.7 0.2 1.1 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|282163051|ref|YP_003355436.1| - 0.11 12.3 0.1 0.27 11.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|282163051|ref|YP_003355436.1| - 0.16 11.4 1.5 0.18 11.2 0.2 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family ABC_ATPase PF09818.4 gi|282163051|ref|YP_003355436.1| - 0.92 8.0 3.5 2.2 6.7 0.8 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class CbiQ PF02361.11 gi|282163052|ref|YP_003355437.1| - 1.5e-18 67.2 25.3 1.3e-17 64.1 17.5 1.9 1 1 0 1 1 1 1 Cobalt transport protein MtrG PF04210.8 gi|282163052|ref|YP_003355437.1| - 0.11 12.2 0.3 1.8 8.3 0.0 2.4 1 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Thioredox_DsbH PF03190.10 gi|282163053|ref|YP_003355438.1| - 1.4e-67 226.4 0.0 2.9e-67 225.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|282163053|ref|YP_003355438.1| - 8.6e-16 57.7 0.1 2.5e-15 56.2 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|282163053|ref|YP_003355438.1| - 3.8e-06 26.1 0.0 1.4e-05 24.2 0.0 1.8 2 0 0 2 2 2 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.8 gi|282163053|ref|YP_003355438.1| - 2.6e-05 23.4 0.9 0.0035 16.4 0.1 2.6 3 0 0 3 3 3 2 Glycosyl Hydrolase Family 88 DUF1680 PF07944.7 gi|282163053|ref|YP_003355438.1| - 0.00015 20.1 0.2 0.38 8.9 0.0 2.7 2 1 1 3 3 3 2 Putative glycosyl hydrolase of unknown function (DUF1680) Thioredoxin_2 PF13098.1 gi|282163053|ref|YP_003355438.1| - 0.00021 21.4 0.0 0.00067 19.8 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin-like domain C5-epim_C PF06662.8 gi|282163053|ref|YP_003355438.1| - 0.0025 17.1 1.6 0.33 10.1 0.0 3.0 3 1 1 4 4 4 2 D-glucuronyl C5-epimerase C-terminus Thioredoxin PF00085.15 gi|282163053|ref|YP_003355438.1| - 0.0027 17.3 1.8 0.0063 16.1 0.3 2.2 3 0 0 3 3 3 1 Thioredoxin Metal_resist PF13801.1 gi|282163053|ref|YP_003355438.1| - 0.1 12.5 0.8 0.24 11.3 0.5 1.6 1 0 0 1 1 1 0 Heavy-metal resistance E1-E2_ATPase PF00122.15 gi|282163054|ref|YP_003355439.1| - 1.8e-61 207.1 3.0 1.8e-60 203.8 0.3 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|282163054|ref|YP_003355439.1| - 3.5e-51 174.6 6.6 3.5e-51 174.6 4.6 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|282163054|ref|YP_003355439.1| - 1.7e-33 114.5 2.8 6.3e-16 58.2 0.4 2.7 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|282163054|ref|YP_003355439.1| - 1.8e-16 60.8 0.0 3.5e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|282163054|ref|YP_003355439.1| - 2.4e-07 30.5 1.4 8.4e-05 22.2 0.2 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase TrbH PF07283.6 gi|282163054|ref|YP_003355439.1| - 0.021 14.7 0.0 0.17 11.7 0.0 2.2 2 0 0 2 2 2 0 Conjugal transfer protein TrbH PCP_red PF08369.5 gi|282163054|ref|YP_003355439.1| - 0.022 14.6 0.3 0.14 12.0 0.1 2.4 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Hydrolase_6 PF13344.1 gi|282163054|ref|YP_003355439.1| - 0.03 14.1 0.0 0.58 10.0 0.0 2.7 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF4448 PF14610.1 gi|282163054|ref|YP_003355439.1| - 0.086 12.3 0.2 0.27 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4448) Rieske PF00355.21 gi|282163055|ref|YP_003355440.1| - 1.6e-15 56.4 0.0 1.8e-15 56.3 0.0 1.0 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|282163055|ref|YP_003355440.1| - 1.2e-10 41.0 0.0 1.3e-10 40.9 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Yip1 PF04893.12 gi|282163057|ref|YP_003355442.1| - 2.1e-20 72.9 11.1 2.7e-20 72.5 7.7 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|282163057|ref|YP_003355442.1| - 1.3e-07 31.3 18.1 2.5e-07 30.5 12.5 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1282) DUF1360 PF07098.6 gi|282163057|ref|YP_003355442.1| - 0.83 9.4 3.5 0.36 10.5 0.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1360) RseC_MucC PF04246.7 gi|282163057|ref|YP_003355442.1| - 2.2 7.8 4.6 0.57 9.7 0.3 2.1 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF381 PF04038.7 gi|282163058|ref|YP_003355443.1| - 8.9e-22 76.9 0.6 1.2e-21 76.4 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|282163058|ref|YP_003355443.1| - 1.3e-21 75.7 0.0 1.8e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF372) HTH_42 PF06224.7 gi|282163059|ref|YP_003355444.1| - 1.6e-46 159.1 0.0 1.9e-46 158.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|282163059|ref|YP_003355444.1| - 5.7e-05 22.7 0.0 0.18 11.4 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|282163059|ref|YP_003355444.1| - 0.00022 21.4 0.1 0.21 11.9 0.0 2.8 3 0 0 3 3 3 2 Winged helix DNA-binding domain HTH_3 PF01381.17 gi|282163060|ref|YP_003355445.1| - 6.4e-13 48.3 0.0 7.4e-13 48.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|282163060|ref|YP_003355445.1| - 1.4e-10 41.0 0.0 1.6e-10 40.8 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|282163060|ref|YP_003355445.1| - 1.6e-08 34.5 0.0 1.9e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|282163060|ref|YP_003355445.1| - 0.0003 20.9 0.0 0.00033 20.7 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.1 gi|282163060|ref|YP_003355445.1| - 0.00044 19.9 0.0 0.00078 19.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_37 PF13744.1 gi|282163060|ref|YP_003355445.1| - 0.0089 15.8 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|282163060|ref|YP_003355445.1| - 0.015 14.9 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3548 PF12068.3 gi|282163060|ref|YP_003355445.1| - 0.073 12.3 0.0 0.076 12.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3548) EamA PF00892.15 gi|282163061|ref|YP_003355446.1| - 5.5e-05 23.2 9.9 0.00049 20.1 0.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF423 PF04241.10 gi|282163061|ref|YP_003355446.1| - 0.12 12.3 7.3 2 8.3 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF423) DUF1084 PF06454.6 gi|282163061|ref|YP_003355446.1| - 0.21 10.5 5.7 0.31 10.0 4.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1084) DUF3796 PF12676.2 gi|282163061|ref|YP_003355446.1| - 0.21 11.8 11.1 0.03 14.5 2.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3796) DUF2029 PF09594.5 gi|282163061|ref|YP_003355446.1| - 0.22 10.9 7.7 0.065 12.7 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2029) MARVEL PF01284.18 gi|282163061|ref|YP_003355446.1| - 0.54 10.0 16.2 11 5.8 11.7 2.0 1 1 0 1 1 1 0 Membrane-associating domain DUF1673 PF07895.6 gi|282163061|ref|YP_003355446.1| - 3.6 7.0 7.3 5.7 6.4 5.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF2721 PF11026.3 gi|282163061|ref|YP_003355446.1| - 4.6 6.8 12.0 0.42 10.2 2.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) Cation_ATPase_C PF00689.16 gi|282163061|ref|YP_003355446.1| - 7.5 6.0 11.8 14 5.1 8.2 1.5 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF1218 PF06749.7 gi|282163062|ref|YP_003355447.1| - 0.008 16.6 1.0 0.008 16.6 0.7 2.7 1 1 2 3 3 3 1 Protein of unknown function (DUF1218) Amastin PF07344.6 gi|282163062|ref|YP_003355447.1| - 0.016 14.8 2.7 0.016 14.8 1.8 1.9 1 1 1 2 2 2 0 Amastin surface glycoprotein DUF1516 PF07457.6 gi|282163062|ref|YP_003355447.1| - 0.016 15.2 1.4 0.022 14.8 0.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1516) MFS_1 PF07690.11 gi|282163062|ref|YP_003355447.1| - 0.058 12.1 12.2 0.1 11.2 8.4 1.3 1 1 0 1 1 1 0 Major Facilitator Superfamily Vps55 PF04133.9 gi|282163062|ref|YP_003355447.1| - 0.079 12.7 5.3 0.11 12.2 3.7 1.2 1 0 0 1 1 1 0 Vacuolar protein sorting 55 ATP1G1_PLM_MAT8 PF02038.11 gi|282163062|ref|YP_003355447.1| - 0.12 11.3 0.1 0.73 8.8 0.0 2.2 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family AgrB PF04647.10 gi|282163062|ref|YP_003355447.1| - 0.17 10.9 3.9 0.24 10.4 2.7 1.2 1 0 0 1 1 1 0 Accessory gene regulator B DUF4010 PF13194.1 gi|282163062|ref|YP_003355447.1| - 0.23 10.7 6.8 0.2 10.9 3.5 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4010) Cation_efflux PF01545.16 gi|282163062|ref|YP_003355447.1| - 0.26 10.3 9.5 0.61 9.0 6.6 1.6 1 1 0 1 1 1 0 Cation efflux family DUF1673 PF07895.6 gi|282163062|ref|YP_003355447.1| - 0.57 9.6 11.1 0.71 9.3 7.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF3185 PF11381.3 gi|282163062|ref|YP_003355447.1| - 0.66 9.7 5.0 1.4 8.7 0.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3185) MARVEL PF01284.18 gi|282163062|ref|YP_003355447.1| - 0.72 9.6 9.0 0.53 10.0 1.8 2.3 1 1 0 2 2 2 0 Membrane-associating domain DUF2422 PF10337.4 gi|282163062|ref|YP_003355447.1| - 1.3 7.7 5.4 1.8 7.2 3.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2422) DUF4227 PF14004.1 gi|282163062|ref|YP_003355447.1| - 1.4 8.7 6.4 2.4 8.0 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF4227) 7tm_7 PF08395.7 gi|282163062|ref|YP_003355447.1| - 2.2 7.1 14.2 0.03 13.3 2.2 2.2 1 1 1 2 2 2 0 7tm Chemosensory receptor DUF4064 PF13273.1 gi|282163062|ref|YP_003355447.1| - 2.5 8.2 6.1 1.1 9.4 2.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) RseC_MucC PF04246.7 gi|282163062|ref|YP_003355447.1| - 3 7.4 10.0 0.94 9.0 1.0 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF1430 PF07242.6 gi|282163062|ref|YP_003355447.1| - 3.7 7.6 11.1 0.2 11.7 0.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1430) DUF423 PF04241.10 gi|282163062|ref|YP_003355447.1| - 6.3 6.7 8.1 0.53 10.2 1.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF423) DUF3796 PF12676.2 gi|282163063|ref|YP_003355448.1| - 8.1e-06 26.0 6.8 1e-05 25.7 4.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3796) ABC2_membrane_3 PF12698.2 gi|282163063|ref|YP_003355448.1| - 0.0036 16.4 11.7 0.0052 15.8 8.1 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein Tetraspannin PF00335.15 gi|282163063|ref|YP_003355448.1| - 0.11 11.7 12.4 0.2 10.8 8.6 1.4 1 1 0 1 1 1 0 Tetraspanin family Acyl_transf_3 PF01757.17 gi|282163063|ref|YP_003355448.1| - 0.15 10.8 9.5 0.2 10.4 6.6 1.1 1 0 0 1 1 1 0 Acyltransferase family Polysacc_synt_C PF14667.1 gi|282163063|ref|YP_003355448.1| - 0.17 11.6 15.6 0.054 13.2 4.0 2.1 2 0 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain DUF456 PF04306.8 gi|282163063|ref|YP_003355448.1| - 0.27 11.2 10.8 4.8 7.2 7.5 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF456) DUF2178 PF09946.4 gi|282163063|ref|YP_003355448.1| - 0.55 9.9 5.0 0.76 9.5 3.2 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2178) ABC2_membrane_2 PF12679.2 gi|282163063|ref|YP_003355448.1| - 1.9 7.2 8.2 0.4 9.5 0.1 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF485 PF04341.7 gi|282163063|ref|YP_003355448.1| - 2.2 8.0 14.6 2 8.1 2.8 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF485 DUF3278 PF11683.3 gi|282163063|ref|YP_003355448.1| - 2.3 8.2 9.1 0.26 11.3 2.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3278) PKD_channel PF08016.7 gi|282163063|ref|YP_003355448.1| - 3 6.1 9.4 5 5.4 6.3 1.6 1 1 0 1 1 1 0 Polycystin cation channel DUF2628 PF10947.3 gi|282163063|ref|YP_003355448.1| - 4.8 7.0 13.2 3.8 7.3 2.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) FA_desaturase PF00487.19 gi|282163063|ref|YP_003355448.1| - 5.4 6.3 12.9 1.1 8.6 4.6 1.9 1 1 1 2 2 2 0 Fatty acid desaturase 5TM-5TMR_LYT PF07694.7 gi|282163063|ref|YP_003355448.1| - 9.1 5.5 14.1 17 4.6 9.8 1.4 1 1 0 1 1 1 0 5TMR of 5TMR-LYT DUF2157 PF09925.4 gi|282163064|ref|YP_003355449.1| - 0.00085 18.9 5.9 0.0011 18.5 4.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2157) DUF3796 PF12676.2 gi|282163064|ref|YP_003355449.1| - 0.0057 16.8 1.7 0.0057 16.8 1.2 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF3796) PrgI PF12666.2 gi|282163064|ref|YP_003355449.1| - 0.031 14.4 2.0 0.031 14.4 1.4 2.2 1 1 1 2 2 2 0 PrgI family protein PSII PF00421.14 gi|282163064|ref|YP_003355449.1| - 0.038 12.5 1.8 0.046 12.3 1.2 1.1 1 0 0 1 1 1 0 Photosystem II protein DUF998 PF06197.8 gi|282163064|ref|YP_003355449.1| - 0.57 9.4 10.6 5.3 6.3 7.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF998) Bax1-I PF01027.15 gi|282163064|ref|YP_003355449.1| - 1.3 8.5 11.7 2.2 7.8 8.1 1.2 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF4149 PF13664.1 gi|282163064|ref|YP_003355449.1| - 2.2 8.4 11.7 23 5.1 8.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) DUF4131 PF13567.1 gi|282163064|ref|YP_003355449.1| - 2.9 7.2 11.7 22 4.3 8.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) MgtE PF01769.11 gi|282163064|ref|YP_003355449.1| - 4.6 7.5 9.1 2.8 8.2 1.4 2.0 1 1 1 2 2 2 0 Divalent cation transporter DUF2975 PF11188.3 gi|282163064|ref|YP_003355449.1| - 9.9 5.8 9.0 44 3.7 6.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) 2-Hacid_dh_C PF02826.14 gi|282163065|ref|YP_003355450.1| - 1.5e-62 209.9 0.0 3.1e-62 208.8 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|282163065|ref|YP_003355450.1| - 2.6e-40 136.9 0.6 8.8e-40 135.2 0.1 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|282163065|ref|YP_003355450.1| - 4.9e-09 35.4 0.4 1e-07 31.2 0.1 3.1 3 0 0 3 3 3 1 ACT domain F420_oxidored PF03807.12 gi|282163065|ref|YP_003355450.1| - 0.0017 18.7 0.2 0.35 11.3 0.0 3.1 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent tRNA-Thr_ED PF08915.6 gi|282163066|ref|YP_003355451.1| - 2.2e-54 183.1 0.1 3.8e-54 182.3 0.0 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|282163066|ref|YP_003355451.1| - 9.3e-23 80.6 0.4 1.5e-22 80.0 0.3 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|282163066|ref|YP_003355451.1| - 6.6e-17 61.2 0.2 1.5e-16 60.0 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain HTH_3 PF01381.17 gi|282163067|ref|YP_003355452.1| - 2.7e-07 30.3 0.0 1e-06 28.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix Sigma70_r4 PF04545.11 gi|282163067|ref|YP_003355452.1| - 6e-06 25.4 1.3 0.0035 16.6 0.9 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_19 PF12844.2 gi|282163067|ref|YP_003355452.1| - 1.2e-05 25.2 0.1 2.4e-05 24.2 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|282163067|ref|YP_003355452.1| - 0.00031 20.8 0.0 0.00065 19.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|282163067|ref|YP_003355452.1| - 0.0016 18.0 0.0 0.6 9.8 0.0 2.2 2 0 0 2 2 2 2 MarR family HTH_Crp_2 PF13545.1 gi|282163067|ref|YP_003355452.1| - 0.0047 16.6 0.1 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_37 PF13744.1 gi|282163067|ref|YP_003355452.1| - 0.011 15.5 0.1 0.02 14.6 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|282163067|ref|YP_003355452.1| - 0.016 15.4 0.0 0.024 14.8 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|282163067|ref|YP_003355452.1| - 0.019 14.6 0.1 0.034 13.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PPDK_N PF01326.14 gi|282163068|ref|YP_003355453.1| - 1.8e-101 339.5 0.3 4.4e-101 338.2 0.2 1.6 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|282163068|ref|YP_003355453.1| - 1.2e-82 277.1 0.3 2.2e-82 276.2 0.2 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|282163068|ref|YP_003355453.1| - 2.8e-28 97.2 0.6 9.3e-28 95.6 0.4 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain DRTGG PF07085.7 gi|282163068|ref|YP_003355453.1| - 0.034 13.7 0.5 0.35 10.4 0.0 2.8 2 1 1 3 3 3 0 DRTGG domain Casc1 PF12366.3 gi|282163068|ref|YP_003355453.1| - 0.11 11.9 2.8 0.097 12.1 0.9 1.6 2 0 0 2 2 2 0 Cancer susceptibility candidate 1 Pyridoxal_deC PF00282.14 gi|282163069|ref|YP_003355454.1| - 3.9e-36 124.2 0.0 5.5e-36 123.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|282163069|ref|YP_003355454.1| - 4.5e-10 38.8 0.0 7.7e-10 38.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|282163069|ref|YP_003355454.1| - 9.2e-09 34.7 0.0 3.4e-07 29.5 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|282163069|ref|YP_003355454.1| - 0.00029 20.0 0.0 0.00045 19.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pribosyltran PF00156.22 gi|282163070|ref|YP_003355455.1| - 2.3e-23 82.2 1.9 3.1e-23 81.8 1.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|282163070|ref|YP_003355455.1| - 3e-05 23.3 0.0 4.5e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|282163070|ref|YP_003355455.1| - 0.0015 17.9 0.0 0.0019 17.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase NMT1_2 PF13379.1 gi|282163071|ref|YP_003355456.1| - 5.2e-23 81.7 0.0 6.8e-23 81.3 0.0 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|282163071|ref|YP_003355456.1| - 2.8e-09 36.8 0.0 4.2e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like DUF3834 PF12916.2 gi|282163071|ref|YP_003355456.1| - 0.00047 19.2 0.0 0.064 12.2 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3834) SBP_bac_3 PF00497.15 gi|282163071|ref|YP_003355456.1| - 0.096 11.9 0.0 0.57 9.3 0.0 1.9 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 DUF2099 PF09872.4 gi|282163072|ref|YP_003355457.1| - 2.1e-108 361.2 5.6 2.4e-108 361.0 3.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Peptidase_S8 PF00082.17 gi|282163073|ref|YP_003355458.1| - 3.6e-74 249.4 7.8 4.5e-74 249.1 5.4 1.1 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.11 gi|282163073|ref|YP_003355458.1| - 3.6e-07 30.6 0.2 6.7e-07 29.7 0.1 1.5 1 0 0 1 1 1 1 Peptidase inhibitor I9 Gp_dh_C PF02800.15 gi|282163073|ref|YP_003355458.1| - 0.12 11.8 0.2 3.6 7.0 0.0 2.6 3 0 0 3 3 3 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YHS PF04945.8 gi|282163074|ref|YP_003355459.1| - 5.1e-12 45.4 2.0 6.3e-12 45.1 1.4 1.2 1 0 0 1 1 1 1 YHS domain DUF2116 PF09889.4 gi|282163074|ref|YP_003355459.1| - 0.0026 17.5 0.6 0.0026 17.5 0.4 1.4 2 0 0 2 2 2 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) Arc_trans_TRASH PF08394.5 gi|282163074|ref|YP_003355459.1| - 0.0088 16.1 1.1 0.014 15.5 0.7 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain Ribosomal_L24e PF01246.15 gi|282163074|ref|YP_003355459.1| - 0.035 13.9 0.5 0.038 13.8 0.3 1.2 1 0 0 1 1 1 0 Ribosomal protein L24e HTH_3 PF01381.17 gi|282163075|ref|YP_003355460.1| - 3.3e-08 33.2 0.2 4.8e-08 32.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.1 gi|282163075|ref|YP_003355460.1| - 1.5e-05 24.2 0.5 2.6e-05 23.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_19 PF12844.2 gi|282163075|ref|YP_003355460.1| - 1.6e-05 24.8 0.1 2.5e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|282163075|ref|YP_003355460.1| - 0.0001 22.0 0.1 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|282163075|ref|YP_003355460.1| - 0.00026 20.5 0.2 0.00051 19.5 0.0 1.5 2 0 0 2 2 1 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|282163075|ref|YP_003355460.1| - 0.00035 19.8 0.1 0.00065 18.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|282163075|ref|YP_003355460.1| - 0.00043 20.4 0.0 0.00069 19.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|282163075|ref|YP_003355460.1| - 0.0016 18.0 0.0 0.0032 17.0 0.0 1.6 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|282163075|ref|YP_003355460.1| - 0.0026 17.2 0.5 0.0043 16.4 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_1 PF00126.22 gi|282163075|ref|YP_003355460.1| - 0.0049 16.5 0.2 0.013 15.2 0.0 1.8 2 1 0 2 2 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_11 PF08279.7 gi|282163075|ref|YP_003355460.1| - 0.01 15.4 0.2 0.03 13.9 0.1 1.8 1 1 1 2 2 2 0 HTH domain HTH_17 PF12728.2 gi|282163075|ref|YP_003355460.1| - 0.015 15.4 0.0 0.023 14.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|282163075|ref|YP_003355460.1| - 0.017 14.7 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Phage NinH protein HTH_26 PF13443.1 gi|282163075|ref|YP_003355460.1| - 0.025 14.7 0.0 0.046 13.9 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain P22_Cro PF14549.1 gi|282163075|ref|YP_003355460.1| - 0.041 13.6 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_Tnp_1 PF01527.15 gi|282163075|ref|YP_003355460.1| - 0.052 13.4 0.1 0.067 13.1 0.1 1.2 1 0 0 1 1 1 0 Transposase HTH_40 PF14493.1 gi|282163075|ref|YP_003355460.1| - 0.065 13.4 0.0 0.11 12.7 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|282163075|ref|YP_003355460.1| - 0.071 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|282163075|ref|YP_003355460.1| - 0.074 12.6 0.1 0.19 11.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Cro PF09048.5 gi|282163075|ref|YP_003355460.1| - 0.08 12.5 0.2 0.22 11.1 0.0 1.8 1 1 1 2 2 2 0 Cro Fe_dep_repress PF01325.14 gi|282163075|ref|YP_003355460.1| - 0.081 12.8 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|282163075|ref|YP_003355460.1| - 0.094 12.5 0.1 0.37 10.6 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|282163075|ref|YP_003355460.1| - 0.1 12.3 0.5 0.3 10.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.7 gi|282163075|ref|YP_003355460.1| - 0.12 11.9 0.3 0.25 10.9 0.0 1.7 2 0 0 2 2 1 0 HTH DNA binding domain DUF4473 PF14747.1 gi|282163075|ref|YP_003355460.1| - 0.14 12.4 0.1 0.2 11.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4473) tRNA-Thr_ED PF08915.6 gi|282163077|ref|YP_003355462.1| - 7.7e-46 155.4 0.0 9.2e-46 155.2 0.0 1.1 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase Glycoamylase PF10091.4 gi|282163077|ref|YP_003355462.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative glucoamylase zf-C3H1 PF10650.4 gi|282163077|ref|YP_003355462.1| - 0.58 9.6 3.1 1.2 8.7 2.2 1.5 1 0 0 1 1 1 0 Putative zinc-finger domain Aminotran_5 PF00266.14 gi|282163078|ref|YP_003355463.1| - 1.6e-90 303.5 0.7 1.9e-90 303.2 0.5 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|282163078|ref|YP_003355463.1| - 1.7e-10 40.5 0.7 2.6e-10 39.8 0.5 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|282163078|ref|YP_003355463.1| - 1.8e-09 37.1 0.2 2.5e-09 36.6 0.2 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|282163078|ref|YP_003355463.1| - 5.4e-05 21.6 0.2 7.9e-05 21.1 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|282163078|ref|YP_003355463.1| - 0.0058 15.1 0.1 0.0097 14.3 0.1 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain NifU_N PF01592.11 gi|282163079|ref|YP_003355464.1| - 1.6e-47 160.5 0.1 1.9e-47 160.3 0.0 1.1 1 0 0 1 1 1 1 NifU-like N terminal domain UPF0051 PF01458.12 gi|282163080|ref|YP_003355465.1| - 2.9e-54 183.9 0.0 3.9e-54 183.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0181 PF03701.9 gi|282163080|ref|YP_003355465.1| - 0.029 13.6 0.0 0.061 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) ABC_tran PF00005.22 gi|282163081|ref|YP_003355466.1| - 7.2e-24 84.6 0.0 1.1e-23 84.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163081|ref|YP_003355466.1| - 1.5e-07 31.6 3.7 0.0023 17.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|282163081|ref|YP_003355466.1| - 6e-06 25.6 0.7 0.046 12.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|282163081|ref|YP_003355466.1| - 0.0017 17.8 0.0 0.0034 16.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|282163081|ref|YP_003355466.1| - 0.0019 17.3 0.0 0.0027 16.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|282163081|ref|YP_003355466.1| - 0.012 15.0 0.1 0.022 14.1 0.0 1.6 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|282163081|ref|YP_003355466.1| - 0.057 13.7 1.4 0.12 12.6 1.0 1.9 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|282163081|ref|YP_003355466.1| - 0.074 12.4 0.0 1.3 8.3 0.0 2.1 2 0 0 2 2 2 0 MutS domain V Aminotran_3 PF00202.16 gi|282163082|ref|YP_003355467.1| - 1.1e-115 386.0 0.5 1.4e-115 385.8 0.4 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|282163082|ref|YP_003355467.1| - 2e-07 30.3 0.0 1.2e-06 27.6 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|282163082|ref|YP_003355467.1| - 0.00023 20.0 0.0 0.0045 15.7 0.0 2.2 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|282163082|ref|YP_003355467.1| - 0.00026 20.2 0.0 0.00054 19.1 0.0 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase GMP_synt_C PF00958.17 gi|282163083|ref|YP_003355468.1| - 3e-31 106.9 0.0 5.5e-31 106.1 0.0 1.4 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|282163083|ref|YP_003355468.1| - 9.1e-10 37.8 0.0 0.00017 20.5 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|282163083|ref|YP_003355468.1| - 2.2e-05 23.2 0.0 0.0094 14.5 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|282163083|ref|YP_003355468.1| - 9.3e-05 22.0 0.1 0.00015 21.3 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|282163083|ref|YP_003355468.1| - 0.0013 18.0 0.0 0.012 14.9 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|282163083|ref|YP_003355468.1| - 0.0042 16.5 0.0 0.027 13.9 0.0 2.4 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|282163083|ref|YP_003355468.1| - 0.07 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Flavodoxin_4 PF12682.2 gi|282163084|ref|YP_003355469.1| - 5.9e-12 45.2 0.1 2e-11 43.4 0.0 1.7 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|282163084|ref|YP_003355469.1| - 4.1e-10 39.3 0.0 4.9e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.2 gi|282163084|ref|YP_003355469.1| - 2.5e-07 30.2 0.2 0.00051 19.4 0.1 2.6 1 1 1 2 2 2 1 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|282163084|ref|YP_003355469.1| - 1.6e-06 28.1 0.0 0.00099 19.1 0.0 2.3 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_2 PF02525.12 gi|282163084|ref|YP_003355469.1| - 0.00011 21.7 0.1 0.0003 20.3 0.1 1.9 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.20 gi|282163084|ref|YP_003355469.1| - 0.0022 17.9 0.1 0.015 15.3 0.1 2.0 1 1 0 1 1 1 1 Flavodoxin NAD_binding_10 PF13460.1 gi|282163084|ref|YP_003355469.1| - 0.016 15.2 0.0 0.034 14.1 0.0 1.6 2 1 0 2 2 2 0 NADH(P)-binding BatA PF07584.6 gi|282163085|ref|YP_003355470.1| - 0.16 12.1 2.2 1.8 8.8 0.0 2.1 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal DUF2626 PF11117.3 gi|282163085|ref|YP_003355470.1| - 0.24 11.8 4.5 0.36 11.2 2.7 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2626) DUF3108 PF11306.3 gi|282163086|ref|YP_003355471.1| - 1.1e-06 28.5 10.5 2e-05 24.3 0.1 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF3108) DUF4412 PF14371.1 gi|282163086|ref|YP_003355471.1| - 0.00088 19.7 0.5 0.00088 19.7 0.4 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4412) DUF3530 PF12048.3 gi|282163086|ref|YP_003355471.1| - 0.3 10.0 2.6 0.94 8.4 1.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3530) SoxE PF06525.6 gi|282163086|ref|YP_003355471.1| - 0.48 9.6 4.4 0.4 9.9 1.1 2.0 2 0 0 2 2 2 0 Sulfocyanin (SoxE) FMN_red PF03358.10 gi|282163087|ref|YP_003355472.1| - 2.7e-11 43.1 0.1 5.3e-09 35.7 0.0 2.2 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|282163087|ref|YP_003355472.1| - 1.3e-07 31.7 0.1 1.8e-07 31.2 0.1 1.5 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|282163087|ref|YP_003355472.1| - 2.5e-07 30.7 0.0 3.5e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|282163087|ref|YP_003355472.1| - 0.00025 20.4 0.0 0.00039 19.8 0.0 1.6 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|282163087|ref|YP_003355472.1| - 0.00045 19.6 0.0 0.015 14.6 0.0 2.0 1 1 1 2 2 2 1 Flavodoxin Flavodoxin_2 PF02525.12 gi|282163087|ref|YP_003355472.1| - 0.00094 18.7 0.0 0.023 14.1 0.0 2.1 1 1 0 1 1 1 1 Flavodoxin-like fold AMP-binding PF00501.23 gi|282163089|ref|YP_003355474.1| - 2.4e-99 332.5 0.0 2.8e-99 332.3 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|282163089|ref|YP_003355474.1| - 1.4e-18 67.6 0.0 3.9e-18 66.1 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Methyltransf_18 PF12847.2 gi|282163090|ref|YP_003355475.1| - 6.1e-12 46.1 0.1 1.1e-11 45.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282163090|ref|YP_003355475.1| - 3.1e-11 43.2 0.0 4.5e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163090|ref|YP_003355475.1| - 1.4e-09 37.7 0.0 2.2e-09 37.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282163090|ref|YP_003355475.1| - 1.6e-09 38.0 0.3 4e-09 36.7 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282163090|ref|YP_003355475.1| - 4.2e-08 33.2 0.1 1.1e-07 31.8 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282163090|ref|YP_003355475.1| - 6.1e-08 33.0 0.0 1.1e-07 32.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282163090|ref|YP_003355475.1| - 6.3e-07 29.7 0.0 1.1e-06 29.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|282163090|ref|YP_003355475.1| - 4e-05 23.0 0.0 6.2e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|282163090|ref|YP_003355475.1| - 0.00019 20.6 0.0 0.00029 20.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|282163090|ref|YP_003355475.1| - 0.0096 14.9 0.0 0.016 14.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|282163090|ref|YP_003355475.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|282163090|ref|YP_003355475.1| - 0.14 11.2 0.0 0.21 10.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) ASCH PF04266.9 gi|282163091|ref|YP_003355476.1| - 9.1e-06 26.0 0.9 1.1e-05 25.7 0.6 1.3 1 1 0 1 1 1 1 ASCH domain DUF3850 PF12961.2 gi|282163091|ref|YP_003355476.1| - 0.01 15.8 0.4 0.02 14.8 0.3 1.5 1 0 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3850) Toxin_41 PF15521.1 gi|282163091|ref|YP_003355476.1| - 0.13 11.4 0.0 0.16 11.1 0.0 1.1 1 0 0 1 1 1 0 Putative toxin 41 EVE PF01878.13 gi|282163092|ref|YP_003355477.1| - 9.3e-06 25.7 0.1 1.7e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 EVE domain DUF2258 PF10015.4 gi|282163092|ref|YP_003355477.1| - 0.034 13.9 0.0 0.12 12.1 0.0 1.9 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2258) DUF4031 PF13223.1 gi|282163092|ref|YP_003355477.1| - 0.071 13.2 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4031) MarR PF01047.17 gi|282163093|ref|YP_003355478.1| - 2.2e-11 43.2 0.7 6.6e-11 41.7 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|282163093|ref|YP_003355478.1| - 2.1e-10 40.7 0.3 1.9e-09 37.6 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|282163093|ref|YP_003355478.1| - 6.6e-10 38.5 0.0 3.2e-09 36.3 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|282163093|ref|YP_003355478.1| - 1e-07 31.5 0.1 2e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|282163093|ref|YP_003355478.1| - 6.6e-07 28.6 0.6 2.4e-06 26.8 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|282163093|ref|YP_003355478.1| - 4.9e-06 26.2 0.1 1.6e-05 24.6 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|282163093|ref|YP_003355478.1| - 4.3e-05 23.3 1.0 0.00014 21.7 0.1 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_15 PF12324.3 gi|282163093|ref|YP_003355478.1| - 0.00016 21.2 0.0 0.00025 20.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of alkylmercury lyase FeoC PF09012.5 gi|282163093|ref|YP_003355478.1| - 0.00017 21.2 0.1 0.00036 20.1 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_20 PF12840.2 gi|282163093|ref|YP_003355478.1| - 0.00032 20.4 0.0 0.041 13.6 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|282163093|ref|YP_003355478.1| - 0.00043 20.2 0.4 0.0014 18.6 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HrcA_DNA-bdg PF03444.10 gi|282163093|ref|YP_003355478.1| - 0.00054 19.3 0.1 0.00097 18.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_36 PF13730.1 gi|282163093|ref|YP_003355478.1| - 0.00093 19.2 0.9 0.0051 16.9 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain DUF505 PF04458.7 gi|282163093|ref|YP_003355478.1| - 0.0016 16.6 0.6 0.0019 16.3 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) B-block_TFIIIC PF04182.7 gi|282163093|ref|YP_003355478.1| - 0.0018 18.0 0.0 0.0036 17.1 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC LexA_DNA_bind PF01726.11 gi|282163093|ref|YP_003355478.1| - 0.0025 17.3 0.0 0.0045 16.5 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain Penicillinase_R PF03965.11 gi|282163093|ref|YP_003355478.1| - 0.0033 17.5 0.3 0.0057 16.7 0.2 1.6 1 1 0 1 1 1 1 Penicillinase repressor HTH_11 PF08279.7 gi|282163093|ref|YP_003355478.1| - 0.0043 16.6 0.1 0.011 15.3 0.0 1.7 2 0 0 2 2 1 1 HTH domain HTH_12 PF08461.5 gi|282163093|ref|YP_003355478.1| - 0.0057 16.3 1.8 0.022 14.5 0.1 2.5 2 1 1 3 3 2 1 Ribonuclease R winged-helix domain S10_plectin PF03501.10 gi|282163093|ref|YP_003355478.1| - 0.0064 16.3 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Plectin/S10 domain Rrf2 PF02082.15 gi|282163093|ref|YP_003355478.1| - 0.0067 16.5 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator DUF655 PF04919.7 gi|282163093|ref|YP_003355478.1| - 0.01 15.5 0.1 0.012 15.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF655) HxlR PF01638.12 gi|282163093|ref|YP_003355478.1| - 0.016 14.7 0.2 0.23 11.1 0.0 2.3 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HTH_IclR PF09339.5 gi|282163093|ref|YP_003355478.1| - 0.018 14.6 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|282163093|ref|YP_003355478.1| - 0.018 14.7 0.0 0.45 10.2 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain HTH_5 PF01022.15 gi|282163093|ref|YP_003355478.1| - 0.026 14.1 0.4 0.083 12.5 0.0 2.1 3 0 0 3 3 2 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|282163093|ref|YP_003355478.1| - 0.029 14.1 0.1 0.051 13.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix PadR PF03551.9 gi|282163093|ref|YP_003355478.1| - 0.03 14.0 0.2 0.065 13.0 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family KorB PF08535.5 gi|282163093|ref|YP_003355478.1| - 0.031 14.4 0.1 0.11 12.7 0.0 1.9 1 1 1 2 2 2 0 KorB domain DUF2250 PF10007.4 gi|282163093|ref|YP_003355478.1| - 0.033 14.0 0.2 0.14 12.0 0.1 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) RuvB_C PF05491.8 gi|282163093|ref|YP_003355478.1| - 0.033 13.8 0.0 0.1 12.2 0.0 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus TusA PF01206.12 gi|282163093|ref|YP_003355478.1| - 0.044 13.3 0.0 0.082 12.5 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA DUF387 PF04079.11 gi|282163093|ref|YP_003355478.1| - 0.05 12.9 0.1 0.16 11.2 0.1 1.5 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) DUF965 PF06135.7 gi|282163093|ref|YP_003355478.1| - 0.057 13.4 0.1 4.5 7.3 0.0 2.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF965) DUF3116 PF11313.3 gi|282163093|ref|YP_003355478.1| - 0.064 12.8 0.4 0.2 11.2 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3116) HTH_29 PF13551.1 gi|282163093|ref|YP_003355478.1| - 0.07 13.2 0.0 0.48 10.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix RQC PF09382.5 gi|282163093|ref|YP_003355478.1| - 0.075 12.7 0.1 0.16 11.7 0.0 1.6 1 1 0 1 1 1 0 RQC domain DUF2513 PF10711.4 gi|282163093|ref|YP_003355478.1| - 0.087 12.9 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_38 PF13936.1 gi|282163093|ref|YP_003355478.1| - 0.1 12.1 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain NETI PF14044.1 gi|282163093|ref|YP_003355478.1| - 0.2 11.1 0.8 0.61 9.6 0.0 2.1 3 0 0 3 3 2 0 NETI protein DUF4386 PF14329.1 gi|282163094|ref|YP_003355479.1| - 1.4e-53 181.6 31.8 1.6e-53 181.4 22.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4386) Flavodoxin_3 PF12641.2 gi|282163095|ref|YP_003355480.1| - 6.9e-10 38.5 0.0 1.2e-09 37.8 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|282163095|ref|YP_003355480.1| - 2.5e-08 34.0 0.0 3.3e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Ribosomal_L10 PF00466.15 gi|282163095|ref|YP_003355480.1| - 0.11 12.4 0.1 18 5.3 0.0 2.4 2 0 0 2 2 2 0 Ribosomal protein L10 HTH_27 PF13463.1 gi|282163096|ref|YP_003355481.1| - 1.3e-08 34.9 0.0 2e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|282163096|ref|YP_003355481.1| - 8.3e-08 31.7 0.0 1.5e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|282163096|ref|YP_003355481.1| - 1.7e-07 30.8 0.0 3.3e-07 29.8 0.0 1.6 1 1 0 1 1 1 1 MarR family TrmB PF01978.14 gi|282163096|ref|YP_003355481.1| - 3.2e-05 23.5 0.1 5.4e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|282163096|ref|YP_003355481.1| - 0.001 18.4 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|282163096|ref|YP_003355481.1| - 0.0011 18.4 0.0 0.0019 17.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|282163096|ref|YP_003355481.1| - 0.0015 18.2 0.0 0.0025 17.6 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_15 PF12324.3 gi|282163096|ref|YP_003355481.1| - 0.0031 17.1 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of alkylmercury lyase HTH_36 PF13730.1 gi|282163096|ref|YP_003355481.1| - 0.0035 17.4 0.1 0.0093 16.0 0.0 1.7 2 1 0 2 2 2 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|282163096|ref|YP_003355481.1| - 0.0066 15.9 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain Fe_dep_repress PF01325.14 gi|282163096|ref|YP_003355481.1| - 0.0076 16.1 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|282163096|ref|YP_003355481.1| - 0.013 15.6 0.0 0.022 14.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|282163096|ref|YP_003355481.1| - 0.028 14.2 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF4386 PF14329.1 gi|282163097|ref|YP_003355482.1| - 1.3e-38 132.6 28.9 1.5e-38 132.4 20.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4386) DUF3483 PF11982.3 gi|282163097|ref|YP_003355482.1| - 1.4 8.2 8.1 0.076 12.3 2.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3483) DUF1427 PF07235.6 gi|282163097|ref|YP_003355482.1| - 1.8 8.6 4.1 5.7 7.0 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1427) DUF4244 PF14029.1 gi|282163097|ref|YP_003355482.1| - 4.2 6.5 5.4 0.94 8.6 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4244) DUF3938 PF13074.1 gi|282163098|ref|YP_003355483.1| - 0.011 15.5 0.8 0.02 14.7 0.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3938) TMEM240 PF15207.1 gi|282163098|ref|YP_003355483.1| - 0.093 12.3 0.1 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 TMEM240 family P12 PF12669.2 gi|282163098|ref|YP_003355483.1| - 0.58 10.4 0.0 0.58 10.4 0.0 2.5 3 0 0 3 3 3 0 Virus attachment protein p12 family Spore_YabQ PF09578.5 gi|282163098|ref|YP_003355483.1| - 4.8 7.2 10.1 2.3 8.2 4.6 2.2 2 1 0 2 2 2 0 Spore cortex protein YabQ (Spore_YabQ) EpuA PF11772.3 gi|282163098|ref|YP_003355483.1| - 6.6 6.2 7.6 8.9 5.8 0.1 2.9 3 0 0 3 3 3 0 DNA-directed RNA polymerase subunit beta DUF4341 PF14241.1 gi|282163098|ref|YP_003355483.1| - 8.6 6.1 9.3 3.5 7.4 0.1 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4341) P-II PF00543.17 gi|282163101|ref|YP_003355486.1| - 9.4e-33 112.7 0.2 1e-32 112.5 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|282163101|ref|YP_003355486.1| - 0.0034 17.3 0.2 1.5 8.8 0.0 2.9 2 1 1 3 3 3 1 Protein of unknown function (DUF970) AAA_10 PF12846.2 gi|282163102|ref|YP_003355487.1| - 2.5e-18 66.5 0.3 2.4e-17 63.3 0.0 2.5 2 1 0 2 2 2 1 AAA-like domain DUF853 PF05872.7 gi|282163102|ref|YP_003355487.1| - 6e-07 28.1 2.0 0.00059 18.3 0.0 3.4 3 0 0 3 3 3 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.12 gi|282163102|ref|YP_003355487.1| - 9.6e-06 25.5 0.4 0.00012 22.0 0.0 2.7 3 1 0 3 3 3 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|282163102|ref|YP_003355487.1| - 5.1e-05 22.0 0.0 0.0011 17.7 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain HSBP1 PF06825.7 gi|282163102|ref|YP_003355487.1| - 0.0058 16.1 0.0 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 Heat shock factor binding protein 1 FtsK_SpoIIIE PF01580.13 gi|282163102|ref|YP_003355487.1| - 0.0094 15.4 0.1 0.05 13.0 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family MobB PF03205.9 gi|282163102|ref|YP_003355487.1| - 0.035 13.8 0.0 0.093 12.4 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Phage_GP20 PF06810.6 gi|282163102|ref|YP_003355487.1| - 0.089 12.2 7.5 0.47 9.8 0.5 2.3 2 0 0 2 2 2 0 Phage minor structural protein GP20 NPV_P10 PF05531.7 gi|282163102|ref|YP_003355487.1| - 0.094 12.9 3.6 0.14 12.4 0.5 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4407 PF14362.1 gi|282163102|ref|YP_003355487.1| - 0.15 10.9 12.7 0.23 10.3 8.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF883 PF05957.8 gi|282163102|ref|YP_003355487.1| - 0.19 12.1 11.3 2.5 8.5 2.3 2.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Syntaxin PF00804.20 gi|282163102|ref|YP_003355487.1| - 0.21 11.7 4.7 1.6 8.9 0.1 2.4 2 0 0 2 2 2 0 Syntaxin DUF812 PF05667.6 gi|282163102|ref|YP_003355487.1| - 0.25 9.8 5.3 0.34 9.3 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Apolipoprotein PF01442.13 gi|282163102|ref|YP_003355487.1| - 2.4 7.6 14.4 24 4.3 10.0 2.0 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain OmpH PF03938.9 gi|282163102|ref|YP_003355487.1| - 6 6.7 16.0 4.9 7.0 4.4 2.4 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Asp_Glu_race PF01177.17 gi|282163103|ref|YP_003355488.1| - 1.8e-36 126.0 0.1 2.1e-36 125.8 0.1 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Trep_Strep PF09605.5 gi|282163104|ref|YP_003355489.1| - 0.011 15.4 1.9 0.014 15.1 1.3 1.1 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) TauE PF01925.14 gi|282163104|ref|YP_003355489.1| - 0.011 15.1 0.1 0.013 15.0 0.1 1.0 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE DUF4199 PF13858.1 gi|282163104|ref|YP_003355489.1| - 0.011 15.6 1.9 0.013 15.3 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) DUF3989 PF13150.1 gi|282163104|ref|YP_003355489.1| - 0.018 14.5 0.1 1.9 8.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) MFS_2 PF13347.1 gi|282163104|ref|YP_003355489.1| - 0.027 12.8 0.1 0.028 12.8 0.1 1.0 1 0 0 1 1 1 0 MFS/sugar transport protein DUF3902 PF13042.1 gi|282163104|ref|YP_003355489.1| - 0.03 13.5 0.4 0.033 13.5 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3902) PrgI PF12666.2 gi|282163104|ref|YP_003355489.1| - 0.035 14.2 0.7 0.042 13.9 0.5 1.2 1 0 0 1 1 1 0 PrgI family protein DUF2339 PF10101.4 gi|282163104|ref|YP_003355489.1| - 0.042 12.1 0.2 0.05 11.8 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2339) DUF2964 PF11177.3 gi|282163104|ref|YP_003355489.1| - 0.067 13.1 2.2 0.094 12.6 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2964) SPC12 PF06645.8 gi|282163104|ref|YP_003355489.1| - 0.084 12.6 2.5 0.12 12.1 1.7 1.3 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Cation_ATPase_C PF00689.16 gi|282163104|ref|YP_003355489.1| - 0.17 11.3 3.3 0.28 10.6 2.3 1.5 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF3040 PF11239.3 gi|282163104|ref|YP_003355489.1| - 0.24 11.4 1.3 0.34 10.9 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Wzy_C PF04932.10 gi|282163104|ref|YP_003355489.1| - 0.27 11.0 1.5 0.28 10.9 1.1 1.0 1 0 0 1 1 1 0 O-Antigen ligase ExoD PF06055.7 gi|282163104|ref|YP_003355489.1| - 0.63 9.1 2.7 1.1 8.3 1.9 1.4 1 1 0 1 1 1 0 Exopolysaccharide synthesis, ExoD Tetraspannin PF00335.15 gi|282163104|ref|YP_003355489.1| - 1.8 7.7 4.6 2.1 7.5 3.2 1.1 1 0 0 1 1 1 0 Tetraspanin family AAA PF00004.24 gi|282163105|ref|YP_003355490.1| - 3.1e-11 43.5 0.0 8.1e-11 42.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|282163105|ref|YP_003355490.1| - 4e-07 29.0 0.0 0.005 15.5 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|282163105|ref|YP_003355490.1| - 2.2e-05 24.6 0.3 0.0016 18.5 0.2 2.6 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|282163105|ref|YP_003355490.1| - 0.0025 16.9 0.0 0.011 14.7 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|282163105|ref|YP_003355490.1| - 0.0054 17.5 0.1 0.022 15.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|282163105|ref|YP_003355490.1| - 0.0086 15.9 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|282163105|ref|YP_003355490.1| - 0.0088 15.4 0.0 0.024 14.0 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|282163105|ref|YP_003355490.1| - 0.017 14.5 0.9 0.075 12.4 0.4 2.1 1 1 1 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|282163105|ref|YP_003355490.1| - 0.02 14.5 0.0 0.053 13.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|282163105|ref|YP_003355490.1| - 0.021 14.8 0.4 0.15 12.0 0.0 2.6 2 1 0 2 2 2 0 AAA ATPase domain DUF815 PF05673.8 gi|282163105|ref|YP_003355490.1| - 0.028 13.3 0.0 0.057 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|282163105|ref|YP_003355490.1| - 0.041 13.8 0.0 0.19 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|282163105|ref|YP_003355490.1| - 0.042 13.4 0.1 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|282163105|ref|YP_003355490.1| - 0.047 13.8 0.0 0.084 13.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase TIP49 PF06068.8 gi|282163105|ref|YP_003355490.1| - 0.052 12.2 0.1 0.37 9.4 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus AAA_19 PF13245.1 gi|282163105|ref|YP_003355490.1| - 0.073 12.8 0.1 0.5 10.1 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain DNA_pol3_delta PF06144.8 gi|282163105|ref|YP_003355490.1| - 0.082 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III, delta subunit AIRS PF00586.19 gi|282163106|ref|YP_003355491.1| - 1.4e-17 63.7 0.1 3.1e-17 62.5 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|282163106|ref|YP_003355491.1| - 3.5e-13 49.8 0.0 4.8e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Iso_dh PF00180.15 gi|282163107|ref|YP_003355492.1| - 2.2e-88 296.5 0.1 2.6e-88 296.3 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF336 PF03928.9 gi|282163107|ref|YP_003355492.1| - 0.033 13.9 0.0 0.077 12.7 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF336) PGK PF00162.14 gi|282163108|ref|YP_003355493.1| - 9e-118 393.1 0.5 1e-117 392.9 0.3 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase SSF PF00474.12 gi|282163110|ref|YP_003355495.1| - 1.8e-52 178.4 43.6 2.7e-52 177.7 30.2 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family TrmB PF01978.14 gi|282163112|ref|YP_003355497.1| - 2.1e-19 68.9 0.3 4.8e-19 67.8 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|282163112|ref|YP_003355497.1| - 1.3e-05 24.2 0.1 2.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.5 gi|282163112|ref|YP_003355497.1| - 0.037 13.6 0.0 0.11 12.0 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain TPR_11 PF13414.1 gi|282163113|ref|YP_003355498.1| - 2.4e-40 135.9 5.3 2.4e-18 65.5 0.1 3.1 1 1 2 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|282163113|ref|YP_003355498.1| - 8.8e-33 109.5 7.4 4.3e-08 32.4 0.0 4.4 5 0 0 5 5 4 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282163113|ref|YP_003355498.1| - 7.4e-32 107.6 4.0 3.4e-08 32.7 0.0 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282163113|ref|YP_003355498.1| - 1.7e-27 93.2 1.7 4.7e-07 29.5 0.1 5.0 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282163113|ref|YP_003355498.1| - 4e-27 94.2 11.3 1.9e-12 47.4 0.3 2.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282163113|ref|YP_003355498.1| - 9.7e-26 89.5 16.3 1.8e-08 34.2 0.3 2.9 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282163113|ref|YP_003355498.1| - 4.5e-22 76.1 4.4 3.1e-06 26.5 0.0 4.4 3 2 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282163113|ref|YP_003355498.1| - 2.1e-20 71.3 3.5 1.5e-05 25.1 0.1 4.1 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282163113|ref|YP_003355498.1| - 1.2e-15 57.5 9.6 2.8e-08 33.9 0.5 2.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282163113|ref|YP_003355498.1| - 2e-13 49.7 2.9 0.003 17.8 0.0 5.1 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282163113|ref|YP_003355498.1| - 7.1e-13 47.3 2.4 0.019 14.7 0.1 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282163113|ref|YP_003355498.1| - 1.2e-07 31.4 1.5 0.0012 18.6 0.0 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282163113|ref|YP_003355498.1| - 9.8e-07 28.8 2.5 0.021 14.9 0.1 3.2 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282163113|ref|YP_003355498.1| - 3.1e-06 26.9 10.4 0.39 10.7 0.1 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|282163113|ref|YP_003355498.1| - 7.2e-06 26.0 0.5 4.3e-05 23.5 0.1 2.3 2 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TOM20_plant PF06552.7 gi|282163113|ref|YP_003355498.1| - 1.3e-05 24.8 0.2 1.8 8.1 0.0 4.2 1 1 4 5 5 5 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_15 PF13429.1 gi|282163113|ref|YP_003355498.1| - 1.5e-05 24.2 0.7 0.064 12.3 0.1 2.9 1 1 2 3 3 3 2 Tetratricopeptide repeat MIT PF04212.13 gi|282163113|ref|YP_003355498.1| - 1.7e-05 24.5 3.9 1.4 8.8 0.0 3.6 3 1 0 3 3 3 2 MIT (microtubule interacting and transport) domain BTAD PF03704.12 gi|282163113|ref|YP_003355498.1| - 2e-05 24.9 4.5 0.013 15.8 0.1 2.3 1 1 2 3 3 3 3 Bacterial transcriptional activator domain TPR_21 PF09976.4 gi|282163113|ref|YP_003355498.1| - 9.6e-05 22.3 1.4 1.5 8.7 0.0 3.6 4 0 0 4 4 4 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|282163113|ref|YP_003355498.1| - 0.00015 20.6 1.6 0.047 12.4 0.1 2.5 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|282163113|ref|YP_003355498.1| - 0.00017 21.3 4.3 0.68 9.8 0.0 4.0 1 1 3 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat TPR_5 PF12688.2 gi|282163113|ref|YP_003355498.1| - 0.0011 19.0 1.8 2.3 8.2 0.0 3.1 2 1 0 2 2 2 2 Tetratrico peptide repeat SHNi-TPR PF10516.4 gi|282163113|ref|YP_003355498.1| - 0.003 16.7 0.2 12 5.2 0.0 3.9 4 0 0 4 4 4 0 SHNi-TPR DUF3856 PF12968.2 gi|282163113|ref|YP_003355498.1| - 0.0035 17.1 1.1 4.1 7.2 0.3 3.3 1 1 0 2 2 2 1 Domain of Unknown Function (DUF3856) RPN7 PF10602.4 gi|282163113|ref|YP_003355498.1| - 0.0099 15.2 4.0 0.14 11.5 0.4 3.2 1 1 3 4 4 4 1 26S proteasome subunit RPN7 DUF3366 PF11846.3 gi|282163113|ref|YP_003355498.1| - 0.035 13.9 0.1 0.045 13.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3366) Coatomer_E PF04733.9 gi|282163113|ref|YP_003355498.1| - 0.051 12.7 0.3 0.13 11.3 0.1 1.8 1 1 1 2 2 2 0 Coatomer epsilon subunit DUF3775 PF12616.3 gi|282163113|ref|YP_003355498.1| - 0.064 13.0 1.6 1.3 8.9 0.1 3.0 1 1 3 4 4 4 0 Protein of unknown function (DUF3775) FAT PF02259.18 gi|282163113|ref|YP_003355498.1| - 0.08 11.9 0.1 0.59 9.0 0.0 2.0 1 1 0 1 1 1 0 FAT domain GcpE PF04551.9 gi|282163113|ref|YP_003355498.1| - 0.096 11.4 0.1 0.24 10.1 0.1 1.7 1 1 0 1 1 1 0 GcpE protein TPR_4 PF07721.9 gi|282163113|ref|YP_003355498.1| - 0.11 13.0 3.9 7.7 7.2 0.1 4.2 5 1 1 6 6 4 0 Tetratricopeptide repeat Aida_N PF08910.5 gi|282163113|ref|YP_003355498.1| - 0.2 11.8 1.3 14 5.9 0.0 3.2 3 1 1 4 4 3 0 Aida N-terminus Aldo_ket_red PF00248.16 gi|282163114|ref|YP_003355499.1| - 2.7e-32 111.7 0.0 5.5e-29 100.8 0.0 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family NAD_synthase PF02540.12 gi|282163115|ref|YP_003355500.1| - 3.7e-59 199.5 0.0 1.4e-32 112.5 0.0 2.0 1 1 1 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|282163115|ref|YP_003355500.1| - 0.0011 17.5 0.0 0.014 14.0 0.0 2.0 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.8 gi|282163115|ref|YP_003355500.1| - 0.0097 15.2 0.0 0.017 14.3 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|282163115|ref|YP_003355500.1| - 0.017 14.6 0.1 0.029 13.8 0.1 1.7 1 1 0 1 1 1 0 Asparagine synthase HMGL-like PF00682.14 gi|282163116|ref|YP_003355501.1| - 1.3e-33 116.6 0.0 1.9e-33 116.1 0.0 1.2 1 0 0 1 1 1 1 HMGL-like ATP-grasp_5 PF13549.1 gi|282163118|ref|YP_003355503.1| - 1.2e-67 227.3 1.5 1.3e-67 227.2 1.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|282163118|ref|YP_003355503.1| - 3.8e-05 23.1 1.1 0.0005 19.5 0.0 2.4 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|282163118|ref|YP_003355503.1| - 0.0015 18.3 0.1 0.0028 17.3 0.0 1.4 2 0 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|282163119|ref|YP_003355504.1| - 1.1e-53 180.5 5.5 2e-52 176.4 1.3 3.1 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|282163119|ref|YP_003355504.1| - 5.2e-24 84.6 0.1 1.9e-23 82.8 0.0 2.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|282163119|ref|YP_003355504.1| - 7.9e-15 55.1 0.5 1.7e-13 50.8 0.0 2.6 2 0 0 2 2 2 1 CoA binding domain Dak1_2 PF13684.1 gi|282163119|ref|YP_003355504.1| - 0.0022 17.0 0.2 0.13 11.1 0.0 3.0 3 1 1 4 4 4 1 Dihydroxyacetone kinase family Peripla_BP_3 PF13377.1 gi|282163119|ref|YP_003355504.1| - 0.0084 16.1 0.1 0.09 12.7 0.1 2.7 2 1 1 3 3 3 1 Periplasmic binding protein-like domain Ligase_CoA PF00549.14 gi|282163119|ref|YP_003355504.1| - 0.058 12.9 0.1 0.29 10.7 0.0 2.1 2 0 0 2 2 2 0 CoA-ligase ABC_tran PF00005.22 gi|282163120|ref|YP_003355505.1| - 1.5e-24 86.8 0.0 2e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163120|ref|YP_003355505.1| - 5.2e-10 39.7 0.0 8e-05 22.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|282163120|ref|YP_003355505.1| - 1.9e-08 33.8 0.1 0.00042 19.6 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|282163120|ref|YP_003355505.1| - 8.2e-06 25.2 0.0 1.5e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|282163120|ref|YP_003355505.1| - 0.00074 19.8 0.0 0.001 19.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|282163120|ref|YP_003355505.1| - 0.0011 19.1 0.1 0.0095 16.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|282163120|ref|YP_003355505.1| - 0.0029 17.0 0.2 0.033 13.6 0.0 2.0 1 1 0 2 2 2 1 AAA-like domain MobB PF03205.9 gi|282163120|ref|YP_003355505.1| - 0.0092 15.6 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|282163120|ref|YP_003355505.1| - 0.013 14.5 0.0 1.6 7.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|282163120|ref|YP_003355505.1| - 0.013 15.4 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|282163120|ref|YP_003355505.1| - 0.016 15.5 0.0 0.055 13.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|282163120|ref|YP_003355505.1| - 0.025 13.7 0.0 0.038 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|282163120|ref|YP_003355505.1| - 0.029 15.1 0.0 0.07 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|282163120|ref|YP_003355505.1| - 0.043 13.6 0.1 0.071 12.9 0.1 1.3 1 0 0 1 1 1 0 Dynamin family ABC_ATPase PF09818.4 gi|282163120|ref|YP_003355505.1| - 0.043 12.3 0.2 0.89 8.0 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class FtsK_SpoIIIE PF01580.13 gi|282163120|ref|YP_003355505.1| - 0.048 13.1 0.0 0.085 12.3 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|282163120|ref|YP_003355505.1| - 0.067 13.6 0.0 0.12 12.9 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein KTI12 PF08433.5 gi|282163120|ref|YP_003355505.1| - 0.079 12.1 0.0 0.16 11.1 0.0 1.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_33 PF13671.1 gi|282163120|ref|YP_003355505.1| - 0.084 12.7 0.1 0.19 11.5 0.1 1.6 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|282163120|ref|YP_003355505.1| - 0.091 11.6 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein HECA PF15353.1 gi|282163120|ref|YP_003355505.1| - 0.1 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Headcase protein family homologue NACHT PF05729.7 gi|282163120|ref|YP_003355505.1| - 0.15 11.7 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.1 gi|282163120|ref|YP_003355505.1| - 0.25 9.7 0.0 7.5 4.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF1284 PF06935.6 gi|282163121|ref|YP_003355506.1| - 6.3e-29 100.1 0.2 7.7e-29 99.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) Osmo_CC PF08946.5 gi|282163121|ref|YP_003355506.1| - 0.055 13.5 0.7 2.9 8.0 0.1 2.4 2 0 0 2 2 2 0 Osmosensory transporter coiled coil DHquinase_I PF01487.10 gi|282163122|ref|YP_003355507.1| - 2.2e-56 191.0 0.0 2.6e-56 190.8 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Pterin_bind PF00809.17 gi|282163123|ref|YP_003355508.1| - 2.9e-09 36.6 0.1 4.9e-08 32.5 0.0 2.4 1 1 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.1 gi|282163123|ref|YP_003355508.1| - 4.7e-08 32.7 0.0 2.6e-06 27.1 0.0 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4346) CdhD PF03599.11 gi|282163123|ref|YP_003355508.1| - 0.0018 16.8 0.0 0.0031 16.0 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit PHP_C PF13263.1 gi|282163124|ref|YP_003355509.1| - 3.3e-17 61.7 0.3 8.3e-17 60.4 0.1 1.8 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|282163124|ref|YP_003355509.1| - 1.8e-15 57.2 0.0 3.5e-15 56.2 0.0 1.6 1 1 0 1 1 1 1 PHP domain TatD_DNase PF01026.16 gi|282163124|ref|YP_003355509.1| - 0.08 12.1 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 TatD related DNase DUF504 PF04457.7 gi|282163124|ref|YP_003355509.1| - 0.086 13.0 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF504) HTH_AsnC-type PF13404.1 gi|282163125|ref|YP_003355510.1| - 4.4e-11 42.1 0.0 7.6e-11 41.3 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|282163125|ref|YP_003355510.1| - 4.6e-11 42.2 0.3 8.1e-11 41.4 0.2 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|282163125|ref|YP_003355510.1| - 1.7e-09 36.9 0.0 3.9e-09 35.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|282163125|ref|YP_003355510.1| - 0.00049 19.6 0.1 0.0015 18.1 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|282163125|ref|YP_003355510.1| - 0.0013 18.5 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|282163125|ref|YP_003355510.1| - 0.0013 18.2 0.1 0.0034 16.9 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|282163125|ref|YP_003355510.1| - 0.002 17.7 0.0 0.0044 16.6 0.0 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|282163125|ref|YP_003355510.1| - 0.0029 17.4 0.0 0.0073 16.2 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|282163125|ref|YP_003355510.1| - 0.011 15.4 0.0 0.024 14.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|282163125|ref|YP_003355510.1| - 0.016 15.0 0.0 0.035 13.8 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.1 gi|282163125|ref|YP_003355510.1| - 0.018 14.5 0.1 0.038 13.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|282163125|ref|YP_003355510.1| - 0.026 14.2 0.0 0.075 12.7 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.7 gi|282163125|ref|YP_003355510.1| - 0.027 14.0 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_23 PF13384.1 gi|282163125|ref|YP_003355510.1| - 0.043 13.4 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_5 PF01022.15 gi|282163125|ref|YP_003355510.1| - 0.055 13.1 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.7 gi|282163125|ref|YP_003355510.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.5 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_Tnp_ISL3 PF13542.1 gi|282163125|ref|YP_003355510.1| - 0.11 11.6 0.1 0.22 10.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 OST3_OST6 PF04756.8 gi|282163126|ref|YP_003355511.1| - 0.0014 18.1 2.5 0.0021 17.6 1.7 1.3 1 0 0 1 1 1 1 OST3 / OST6 family Cyto_ox_2 PF02322.10 gi|282163126|ref|YP_003355511.1| - 0.041 13.0 4.5 0.05 12.7 3.1 1.0 1 0 0 1 1 1 0 Cytochrome oxidase subunit II PTPS_related PF10131.4 gi|282163126|ref|YP_003355511.1| - 0.53 8.3 4.3 0.52 8.3 3.0 1.0 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein DUF1772 PF08592.6 gi|282163126|ref|YP_003355511.1| - 0.87 9.3 5.9 0.52 10.0 2.7 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1772) VIT1 PF01988.14 gi|282163126|ref|YP_003355511.1| - 1.7 8.0 5.5 0.58 9.6 1.8 1.6 1 1 1 2 2 2 0 VIT family YtpI PF14007.1 gi|282163126|ref|YP_003355511.1| - 2.2 8.2 8.4 26 4.8 5.5 2.3 1 1 0 1 1 1 0 YtpI-like protein TM_helix PF05552.7 gi|282163126|ref|YP_003355511.1| - 6.4 6.5 6.8 13 5.5 1.1 2.3 2 0 0 2 2 2 0 Conserved TM helix ATC_hydrolase PF14196.1 gi|282163127|ref|YP_003355512.1| - 0.0076 16.6 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase Abi PF02517.11 gi|282163128|ref|YP_003355513.1| - 9.3e-13 48.1 9.8 9.3e-13 48.1 6.8 2.9 3 0 0 3 3 3 1 CAAX protease self-immunity DUF2542 PF10808.3 gi|282163128|ref|YP_003355513.1| - 5.5 7.3 6.9 0.36 11.1 0.2 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2542) Vpu PF00558.14 gi|282163129|ref|YP_003355514.1| - 0.0036 16.8 1.5 0.004 16.6 1.1 1.1 1 0 0 1 1 1 1 Vpu protein Oxidored_q2 PF00420.19 gi|282163129|ref|YP_003355514.1| - 0.0061 16.1 0.1 0.0064 16.0 0.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF485 PF04341.7 gi|282163129|ref|YP_003355514.1| - 0.0075 15.9 0.1 0.0083 15.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF485 DUF1049 PF06305.6 gi|282163129|ref|YP_003355514.1| - 0.0093 15.4 0.9 0.011 15.1 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1049) CD34_antigen PF06365.7 gi|282163129|ref|YP_003355514.1| - 0.023 14.3 0.1 0.023 14.3 0.0 1.0 1 0 0 1 1 1 0 CD34/Podocalyxin family DUF2910 PF11139.3 gi|282163129|ref|YP_003355514.1| - 0.043 12.9 0.3 0.047 12.8 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) UPF0104 PF03706.8 gi|282163129|ref|YP_003355514.1| - 0.061 12.5 1.2 0.059 12.6 0.8 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF4381 PF14316.1 gi|282163129|ref|YP_003355514.1| - 0.14 12.2 1.0 0.15 12.1 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) DUF4175 PF13779.1 gi|282163129|ref|YP_003355514.1| - 0.15 9.7 0.6 0.16 9.6 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) TMEM154 PF15102.1 gi|282163129|ref|YP_003355514.1| - 0.16 11.6 0.2 0.18 11.5 0.1 1.0 1 0 0 1 1 1 0 TMEM154 protein family ATP-synt_B PF00430.13 gi|282163129|ref|YP_003355514.1| - 0.26 11.0 1.4 0.36 10.6 1.0 1.2 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) FixQ PF05545.6 gi|282163129|ref|YP_003355514.1| - 0.33 10.6 2.1 0.53 9.9 1.5 1.4 1 1 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ DUF4400 PF14348.1 gi|282163129|ref|YP_003355514.1| - 0.41 10.0 3.8 0.43 9.9 2.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4400) ATP-synt_C PF00137.16 gi|282163129|ref|YP_003355514.1| - 3.1 7.7 7.5 4.1 7.3 5.2 1.1 1 0 0 1 1 1 0 ATP synthase subunit C MttA_Hcf106 PF02416.11 gi|282163130|ref|YP_003355515.1| - 1.3e-16 59.3 0.5 1.6e-16 59.1 0.3 1.4 1 1 0 1 1 1 1 mttA/Hcf106 family AhpC-TSA PF00578.16 gi|282163131|ref|YP_003355516.1| - 1.3e-35 121.7 0.0 1.7e-35 121.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|282163131|ref|YP_003355516.1| - 1.2e-17 63.7 0.0 1.5e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|282163131|ref|YP_003355516.1| - 4.4e-08 32.6 0.1 9.5e-08 31.5 0.1 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin EIAV_GP90 PF00971.13 gi|282163131|ref|YP_003355516.1| - 0.13 10.7 0.0 0.17 10.3 0.0 1.1 1 0 0 1 1 1 0 EIAV coat protein, gp90 Methyltransf_11 PF08241.7 gi|282163132|ref|YP_003355517.1| - 2.7e-23 82.2 0.0 4.5e-23 81.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163132|ref|YP_003355517.1| - 2.4e-18 66.1 0.0 4e-18 65.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282163132|ref|YP_003355517.1| - 4e-17 62.4 0.0 7.1e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282163132|ref|YP_003355517.1| - 1.8e-15 57.4 0.0 3.4e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282163132|ref|YP_003355517.1| - 4.4e-15 55.4 0.0 6.5e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|282163132|ref|YP_003355517.1| - 4.7e-14 52.1 0.0 6.5e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|282163132|ref|YP_003355517.1| - 1.5e-12 47.8 0.0 3.4e-12 46.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282163132|ref|YP_003355517.1| - 2.8e-11 43.4 0.0 6e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282163132|ref|YP_003355517.1| - 4.9e-11 42.6 0.0 6.5e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|282163132|ref|YP_003355517.1| - 8e-07 28.4 0.1 1e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|282163132|ref|YP_003355517.1| - 8.4e-07 28.7 0.0 1.2e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|282163132|ref|YP_003355517.1| - 5.7e-05 22.3 0.0 8.3e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|282163132|ref|YP_003355517.1| - 7.9e-05 22.3 0.0 0.0024 17.5 0.0 2.1 2 0 0 2 2 2 1 Hypothetical methyltransferase Methyltransf_4 PF02390.12 gi|282163132|ref|YP_003355517.1| - 0.00018 20.6 0.0 0.0017 17.4 0.0 2.0 2 0 0 2 2 2 1 Putative methyltransferase NodS PF05401.6 gi|282163132|ref|YP_003355517.1| - 0.0014 18.0 0.0 0.0023 17.3 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|282163132|ref|YP_003355517.1| - 0.0019 17.6 0.0 0.0041 16.5 0.0 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW N6_Mtase PF02384.11 gi|282163132|ref|YP_003355517.1| - 0.0065 15.5 0.0 0.0096 15.0 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase FA_desaturase PF00487.19 gi|282163132|ref|YP_003355517.1| - 0.02 14.3 1.1 0.028 13.8 0.8 1.2 1 0 0 1 1 1 0 Fatty acid desaturase Methyltransf_32 PF13679.1 gi|282163132|ref|YP_003355517.1| - 0.068 12.8 0.0 0.094 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF1296 PF06972.6 gi|282163132|ref|YP_003355517.1| - 0.11 12.4 0.1 0.26 11.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1296) FmrO PF07091.6 gi|282163132|ref|YP_003355517.1| - 0.13 11.2 0.0 0.32 9.9 0.0 1.6 2 0 0 2 2 2 0 Ribosomal RNA methyltransferase (FmrO) DUF4342 PF14242.1 gi|282163132|ref|YP_003355517.1| - 6.6 6.5 5.7 11 5.9 3.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) Abhydrolase_6 PF12697.2 gi|282163133|ref|YP_003355518.1| - 4.5e-20 72.5 0.2 2.7e-19 69.9 0.2 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|282163133|ref|YP_003355518.1| - 1.3e-09 37.9 0.0 5.4e-08 32.6 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|282163133|ref|YP_003355518.1| - 1.4e-09 37.8 0.0 4.6e-09 36.1 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|282163133|ref|YP_003355518.1| - 0.005 17.1 0.0 0.0064 16.7 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain Lipase_3 PF01764.20 gi|282163133|ref|YP_003355518.1| - 0.015 14.9 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) Ndr PF03096.9 gi|282163133|ref|YP_003355518.1| - 0.048 12.1 0.0 0.086 11.3 0.0 1.4 2 0 0 2 2 2 0 Ndr family Ser_hydrolase PF06821.8 gi|282163133|ref|YP_003355518.1| - 0.092 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase Esterase PF00756.15 gi|282163133|ref|YP_003355518.1| - 0.1 12.0 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Putative esterase BPL_N PF09825.4 gi|282163134|ref|YP_003355519.1| - 0.033 12.9 0.8 0.82 8.3 0.0 2.0 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal ADK_lid PF05191.9 gi|282163135|ref|YP_003355520.1| - 2.7 7.7 6.2 0.61 9.7 0.3 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid HIT PF01230.18 gi|282163136|ref|YP_003355521.1| - 0.0042 17.5 0.1 0.0067 16.9 0.1 1.3 1 0 0 1 1 1 1 HIT domain ABC_tran PF00005.22 gi|282163138|ref|YP_003355523.1| - 2.7e-32 111.9 0.0 4.3e-32 111.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163138|ref|YP_003355523.1| - 1.9e-13 51.0 1.8 5.2e-09 36.4 0.0 2.4 2 1 1 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|282163138|ref|YP_003355523.1| - 0.00093 19.5 0.1 0.0046 17.3 0.0 1.8 1 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|282163138|ref|YP_003355523.1| - 0.0022 17.4 0.1 0.0046 16.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|282163138|ref|YP_003355523.1| - 0.0032 16.9 0.2 0.72 9.2 0.2 2.2 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|282163138|ref|YP_003355523.1| - 0.004 16.4 0.0 0.96 8.6 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|282163138|ref|YP_003355523.1| - 0.0085 16.2 0.3 0.1 12.7 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|282163138|ref|YP_003355523.1| - 0.015 13.8 0.0 0.45 8.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|282163138|ref|YP_003355523.1| - 0.045 13.5 3.9 2.8 7.7 0.4 2.8 3 0 0 3 3 3 0 Domain of unknown function DUF87 DUF258 PF03193.11 gi|282163138|ref|YP_003355523.1| - 0.05 12.7 0.1 0.086 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|282163138|ref|YP_003355523.1| - 0.16 11.8 0.0 1.3 8.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC2_membrane_3 PF12698.2 gi|282163140|ref|YP_003355525.1| - 5.7e-20 71.6 18.6 1.1e-19 70.7 12.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282163140|ref|YP_003355525.1| - 7.5e-11 41.6 13.2 4.7e-10 39.0 9.1 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|282163140|ref|YP_003355525.1| - 6.6e-08 31.7 15.9 1.4e-07 30.6 11.0 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|282163140|ref|YP_003355525.1| - 4.9e-05 22.7 10.7 4.9e-05 22.7 7.4 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein SK_channel PF03530.9 gi|282163140|ref|YP_003355525.1| - 0.13 12.1 3.6 0.19 11.5 0.4 2.5 2 0 0 2 2 2 0 Calcium-activated SK potassium channel YbhQ PF11076.3 gi|282163140|ref|YP_003355525.1| - 3.6 7.2 8.6 0.19 11.3 1.6 2.1 2 1 0 2 2 2 0 Putative inner membrane protein YbhQ Lactamase_B_2 PF12706.2 gi|282163141|ref|YP_003355526.1| - 3e-17 62.7 0.0 3.8e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|282163141|ref|YP_003355526.1| - 7.9e-08 32.1 0.1 1.5e-07 31.2 0.1 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|282163141|ref|YP_003355526.1| - 1.7e-06 27.8 0.0 2.6e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Nitro_FeMo-Co PF02579.12 gi|282163142|ref|YP_003355527.1| - 6.8e-16 58.1 0.1 7.8e-16 57.9 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Pyridox_oxidase PF01243.15 gi|282163144|ref|YP_003355529.1| - 3.3e-15 55.8 0.0 4.1e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Response_reg PF00072.19 gi|282163145|ref|YP_003355530.1| - 3.1e-16 59.3 0.4 5.8e-16 58.4 0.2 1.6 1 1 0 1 1 1 1 Response regulator receiver domain DUF883 PF05957.8 gi|282163146|ref|YP_003355531.1| - 1.1e-10 41.8 0.7 2.3e-10 40.7 0.5 1.5 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) ApoLp-III PF07464.6 gi|282163146|ref|YP_003355531.1| - 0.031 14.2 0.4 0.098 12.6 0.3 1.7 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) Apolipoprotein PF01442.13 gi|282163146|ref|YP_003355531.1| - 0.054 13.0 0.1 0.1 12.0 0.1 1.4 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF2713 PF10897.3 gi|282163146|ref|YP_003355531.1| - 0.062 12.5 0.1 0.067 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2713) Pyr_redox_2 PF07992.9 gi|282163146|ref|YP_003355531.1| - 0.12 12.2 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_10 PF13237.1 gi|282163147|ref|YP_003355532.1| - 2.5e-13 49.5 24.3 4.8e-09 35.8 9.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282163147|ref|YP_003355532.1| - 9e-13 47.2 13.5 1.8e-08 33.6 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282163147|ref|YP_003355532.1| - 3.6e-12 46.4 6.7 1.9e-07 31.3 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282163147|ref|YP_003355532.1| - 1.7e-11 44.1 27.1 1.8e-08 34.5 10.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282163147|ref|YP_003355532.1| - 1.8e-09 37.0 13.5 2.3e-06 27.2 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282163147|ref|YP_003355532.1| - 7.5e-09 35.0 11.7 0.00026 20.7 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282163147|ref|YP_003355532.1| - 2.5e-08 34.5 13.1 4.4e-06 27.3 1.2 2.3 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|282163147|ref|YP_003355532.1| - 4.9e-08 33.1 6.6 0.00011 22.4 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282163147|ref|YP_003355532.1| - 2.2e-07 30.6 13.7 3.8e-07 29.8 9.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282163147|ref|YP_003355532.1| - 4.1e-07 29.9 22.7 0.0002 21.3 0.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282163147|ref|YP_003355532.1| - 6.3e-06 26.1 16.9 0.00019 21.4 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|282163147|ref|YP_003355532.1| - 0.00016 21.9 20.6 0.00059 20.2 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|282163147|ref|YP_003355532.1| - 0.0018 18.6 17.2 0.0072 16.7 2.5 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|282163147|ref|YP_003355532.1| - 0.0031 17.3 9.3 0.0051 16.6 6.4 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282163147|ref|YP_003355532.1| - 0.073 13.4 15.4 0.64 10.4 2.8 2.9 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|282163147|ref|YP_003355532.1| - 0.28 11.7 19.8 0.58 10.7 2.5 3.3 2 2 1 3 3 3 0 4Fe-4S single cluster domain c-SKI_SMAD_bind PF08782.5 gi|282163147|ref|YP_003355532.1| - 5 7.3 10.4 11 6.2 1.5 2.3 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Complex1_49kDa PF00346.14 gi|282163148|ref|YP_003355533.1| - 2.9e-42 144.5 0.0 3.8e-32 111.3 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|282163148|ref|YP_003355533.1| - 7.1e-07 28.3 3.3 6.7e-06 25.1 0.0 3.1 3 1 0 3 3 3 2 Nickel-dependent hydrogenase Complex1_30kDa PF00329.14 gi|282163149|ref|YP_003355534.1| - 6.9e-15 55.1 0.0 8e-15 54.9 0.0 1.0 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF881 PF05949.7 gi|282163149|ref|YP_003355534.1| - 0.042 13.2 0.2 0.054 12.9 0.1 1.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF881) Peptidase_S3 PF00944.14 gi|282163149|ref|YP_003355534.1| - 0.11 11.9 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Alphavirus core protein Oxidored_q6 PF01058.17 gi|282163150|ref|YP_003355535.1| - 8e-26 90.1 2.8 1.3e-25 89.5 1.8 1.4 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NADHdh PF00146.16 gi|282163151|ref|YP_003355536.1| - 1.1e-30 106.7 19.1 1.8e-30 106.0 13.3 1.2 1 0 0 1 1 1 1 NADH dehydrogenase Oxidored_q1 PF00361.15 gi|282163152|ref|YP_003355537.1| - 6e-55 186.4 26.1 6e-55 186.4 18.1 3.6 4 0 0 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|282163152|ref|YP_003355537.1| - 3e-11 42.7 1.1 3e-11 42.7 0.8 4.1 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF3611 PF12263.3 gi|282163152|ref|YP_003355537.1| - 2.3e-05 23.8 1.5 2.3e-05 23.8 1.0 3.8 5 1 0 5 5 5 1 Protein of unknown function (DUF3611) Hydrolase_3 PF08282.7 gi|282163153|ref|YP_003355538.1| - 4.8e-22 78.7 0.0 2.5e-11 43.6 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|282163153|ref|YP_003355538.1| - 1.6e-07 30.9 0.0 0.0035 16.6 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|282163153|ref|YP_003355538.1| - 0.0089 16.2 2.9 0.073 13.2 2.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|282163153|ref|YP_003355538.1| - 0.14 12.5 0.1 2.7 8.3 0.0 2.3 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Glyco_hydro_15 PF00723.16 gi|282163154|ref|YP_003355539.1| - 3e-36 124.9 0.0 1.9e-31 109.1 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 Glycos_transf_1 PF00534.15 gi|282163155|ref|YP_003355540.1| - 2e-47 160.7 0.0 3.1e-47 160.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282163155|ref|YP_003355540.1| - 1.2e-19 70.8 0.0 3.1e-19 69.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282163155|ref|YP_003355540.1| - 7.5e-13 48.9 0.0 3.8e-12 46.6 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|282163155|ref|YP_003355540.1| - 1.6e-09 37.7 0.1 0.0018 18.0 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|282163155|ref|YP_003355540.1| - 1.9e-08 34.4 0.0 1.3e-07 31.7 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|282163155|ref|YP_003355540.1| - 1.4e-06 27.0 0.2 0.00011 20.7 0.1 2.4 2 1 0 2 2 2 2 Glycosyltransferase family 20 Glyco_transf_5 PF08323.6 gi|282163155|ref|YP_003355540.1| - 1.9e-06 27.5 0.0 3.2e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|282163155|ref|YP_003355540.1| - 0.00045 20.0 0.0 0.012 15.4 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like tRNA-synt_2 PF00152.15 gi|282163156|ref|YP_003355541.1| - 3.2e-81 272.6 0.0 3.9e-81 272.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|282163156|ref|YP_003355541.1| - 2.7e-13 49.5 0.1 4.6e-13 48.8 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RCC1 PF00415.13 gi|282163157|ref|YP_003355542.1| - 6.7e-65 215.1 44.6 1.3e-13 50.9 0.2 9.1 8 2 0 8 8 8 7 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.1 gi|282163157|ref|YP_003355542.1| - 1.4e-63 209.2 55.9 1.7e-11 43.3 0.4 7.4 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat CHB_HEX_C_1 PF13290.1 gi|282163157|ref|YP_003355542.1| - 0.00062 19.4 0.5 0.16 11.7 0.0 3.5 3 1 0 3 3 3 1 Chitobiase/beta-hexosaminidase C-terminal domain Cro PF09048.5 gi|282163157|ref|YP_003355542.1| - 0.055 13.1 0.9 0.6 9.7 0.0 2.9 4 0 0 4 4 4 0 Cro DUF912 PF06024.7 gi|282163157|ref|YP_003355542.1| - 0.083 12.9 0.4 0.18 11.8 0.0 1.7 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Herpes_gE PF02480.11 gi|282163157|ref|YP_003355542.1| - 0.18 10.0 0.1 0.34 9.1 0.1 1.4 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E MS_channel PF00924.13 gi|282163158|ref|YP_003355543.1| - 6.5e-45 152.9 0.5 6.5e-45 152.9 0.3 2.2 2 0 0 2 2 2 1 Mechanosensitive ion channel Caa3_CtaG PF09678.5 gi|282163158|ref|YP_003355543.1| - 0.35 9.7 6.5 4.1 6.2 1.0 2.3 2 0 0 2 2 2 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) Aminotran_1_2 PF00155.16 gi|282163159|ref|YP_003355544.1| - 7.5e-70 235.6 0.0 8.5e-70 235.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|282163159|ref|YP_003355544.1| - 2.5e-10 39.9 0.0 3.8e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|282163159|ref|YP_003355544.1| - 1.7e-07 30.3 0.0 4.3e-07 29.0 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|282163159|ref|YP_003355544.1| - 9e-06 25.0 0.0 1.3e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|282163159|ref|YP_003355544.1| - 0.0007 17.9 0.0 0.001 17.4 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|282163159|ref|YP_003355544.1| - 0.0051 15.4 0.0 0.0085 14.6 0.0 1.5 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain AsnC_trans_reg PF01037.16 gi|282163160|ref|YP_003355545.1| - 4.9e-16 58.1 0.2 1.3e-15 56.8 0.0 1.7 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|282163160|ref|YP_003355545.1| - 2.4e-10 39.6 0.4 4.1e-10 38.8 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|282163160|ref|YP_003355545.1| - 1.3e-06 27.8 0.1 4e-06 26.2 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|282163160|ref|YP_003355545.1| - 3.6e-05 23.3 0.1 0.0002 21.0 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|282163160|ref|YP_003355545.1| - 4.6e-05 23.0 0.1 0.00022 20.8 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|282163160|ref|YP_003355545.1| - 0.0004 19.9 0.0 0.0008 18.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|282163160|ref|YP_003355545.1| - 0.00058 19.5 0.1 0.0032 17.2 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|282163160|ref|YP_003355545.1| - 0.0014 18.0 0.2 0.0026 17.2 0.1 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_11 PF08279.7 gi|282163160|ref|YP_003355545.1| - 0.0016 18.0 0.2 0.003 17.1 0.1 1.4 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|282163160|ref|YP_003355545.1| - 0.0024 17.9 0.0 0.044 13.8 0.0 2.5 3 0 0 3 3 3 1 Transcriptional regulator HTH_20 PF12840.2 gi|282163160|ref|YP_003355545.1| - 0.003 17.3 0.1 0.0055 16.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PqqD PF05402.7 gi|282163160|ref|YP_003355545.1| - 0.0049 16.8 0.3 0.2 11.7 0.1 2.9 2 2 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) MarR PF01047.17 gi|282163160|ref|YP_003355545.1| - 0.006 16.2 0.3 0.013 15.1 0.1 1.5 2 0 0 2 2 1 1 MarR family GerE PF00196.14 gi|282163160|ref|YP_003355545.1| - 0.0073 15.6 0.0 1.4 8.2 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family DUF2250 PF10007.4 gi|282163160|ref|YP_003355545.1| - 0.0077 16.1 0.1 0.014 15.3 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|282163160|ref|YP_003355545.1| - 0.013 15.1 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Mga PF08280.6 gi|282163160|ref|YP_003355545.1| - 0.02 14.6 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_29 PF13551.1 gi|282163160|ref|YP_003355545.1| - 0.022 14.9 0.1 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix z-alpha PF02295.12 gi|282163160|ref|YP_003355545.1| - 0.03 14.1 0.0 0.046 13.4 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain DUF977 PF06163.6 gi|282163160|ref|YP_003355545.1| - 0.032 13.9 0.0 0.053 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) DUF440 PF04269.7 gi|282163160|ref|YP_003355545.1| - 0.037 14.0 0.1 0.063 13.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF440 ADP_PFK_GK PF04587.10 gi|282163160|ref|YP_003355545.1| - 0.046 11.9 0.3 0.12 10.5 0.0 1.7 2 0 0 2 2 2 0 ADP-specific Phosphofructokinase/Glucokinase conserved region Death PF00531.17 gi|282163160|ref|YP_003355545.1| - 0.049 13.4 0.0 0.087 12.6 0.0 1.4 1 0 0 1 1 1 0 Death domain HTH_9 PF08221.6 gi|282163160|ref|YP_003355545.1| - 0.053 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain RPA_C PF08784.6 gi|282163160|ref|YP_003355545.1| - 0.057 13.8 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal RepL PF05732.6 gi|282163160|ref|YP_003355545.1| - 0.057 12.6 0.1 0.097 11.8 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) DUF2582 PF10771.4 gi|282163160|ref|YP_003355545.1| - 0.065 13.0 0.5 1.3 8.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2582) HTH_17 PF12728.2 gi|282163160|ref|YP_003355545.1| - 0.067 13.4 0.2 0.19 11.9 0.1 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain FeoC PF09012.5 gi|282163160|ref|YP_003355545.1| - 0.097 12.3 0.2 0.22 11.2 0.1 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_32 PF13565.1 gi|282163160|ref|YP_003355545.1| - 0.11 13.3 0.1 0.31 11.8 0.0 1.8 1 1 0 1 1 1 0 Homeodomain-like domain DUF2711 PF10924.3 gi|282163160|ref|YP_003355545.1| - 0.13 11.7 0.2 0.27 10.6 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2711) HTH_28 PF13518.1 gi|282163160|ref|YP_003355545.1| - 0.13 12.2 0.1 0.59 10.1 0.0 2.2 2 1 0 2 2 1 0 Helix-turn-helix domain Histone PF00125.19 gi|282163161|ref|YP_003355546.1| - 1.7e-15 56.9 0.0 1.8e-15 56.7 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CBFD_NFYB_HMF PF00808.18 gi|282163161|ref|YP_003355546.1| - 8.2e-15 54.6 0.1 8.9e-15 54.5 0.1 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Bromo_TP PF07524.8 gi|282163161|ref|YP_003355546.1| - 6.4e-07 29.0 0.0 6.5e-07 28.9 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-T PF15511.1 gi|282163161|ref|YP_003355546.1| - 1.2e-05 24.8 0.0 1.3e-05 24.6 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T CENP-S PF15630.1 gi|282163161|ref|YP_003355546.1| - 3.9e-05 23.7 0.0 4.2e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID-31kDa PF02291.10 gi|282163161|ref|YP_003355546.1| - 9.1e-05 22.2 0.0 0.00011 22.0 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.8 gi|282163161|ref|YP_003355546.1| - 0.00017 21.7 0.0 0.00019 21.6 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TAF PF02969.12 gi|282163161|ref|YP_003355546.1| - 0.14 12.1 0.1 0.14 12.0 0.1 1.1 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) CBS PF00571.23 gi|282163162|ref|YP_003355547.1| - 5.4e-21 74.1 0.6 3.5e-14 52.3 0.0 2.5 3 0 0 3 3 3 2 CBS domain HTH_3 PF01381.17 gi|282163162|ref|YP_003355547.1| - 9.1e-13 47.8 0.0 2.8e-12 46.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|282163162|ref|YP_003355547.1| - 2.1e-10 40.6 0.0 4.4e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|282163162|ref|YP_003355547.1| - 1.6e-08 34.4 0.0 4.9e-08 32.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|282163162|ref|YP_003355547.1| - 0.00012 21.6 0.0 0.00035 20.1 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|282163162|ref|YP_003355547.1| - 0.0005 19.8 0.3 0.0022 17.7 0.0 2.2 2 2 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|282163162|ref|YP_003355547.1| - 0.024 14.8 0.1 0.32 11.2 0.0 2.6 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain MarR_2 PF12802.2 gi|282163162|ref|YP_003355547.1| - 0.067 12.8 0.1 0.25 11.0 0.0 2.0 2 0 0 2 2 2 0 MarR family Pou PF00157.12 gi|282163162|ref|YP_003355547.1| - 0.094 12.3 0.0 0.41 10.3 0.0 2.1 2 1 0 2 2 2 0 Pou domain - N-terminal to homeobox domain HTH_24 PF13412.1 gi|282163162|ref|YP_003355547.1| - 0.2 11.1 5.4 0.49 9.8 0.0 3.4 4 0 0 4 4 4 0 Winged helix-turn-helix DNA-binding CarboxypepD_reg PF13620.1 gi|282163163|ref|YP_003355548.1| - 3.5e-06 26.9 0.5 3.5e-06 26.9 0.3 3.1 3 1 0 3 3 3 1 Carboxypeptidase regulatory-like domain NPCBM_assoc PF10633.4 gi|282163163|ref|YP_003355548.1| - 1.7e-05 24.7 0.4 0.00018 21.4 0.2 2.5 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4480 PF13715.1 gi|282163163|ref|YP_003355548.1| - 0.00081 19.3 0.6 0.0027 17.7 0.4 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) TIG PF01833.19 gi|282163163|ref|YP_003355548.1| - 0.12 12.3 1.7 10 6.2 0.1 3.7 4 0 0 4 4 4 0 IPT/TIG domain phage_tail_N PF08400.5 gi|282163163|ref|YP_003355548.1| - 0.16 11.6 0.8 1.2 8.8 0.1 2.5 3 0 0 3 3 3 0 Prophage tail fibre N-terminal PDDEXK_3 PF13366.1 gi|282163164|ref|YP_003355549.1| - 4e-40 136.5 1.1 4.6e-40 136.3 0.8 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF2124 PF09897.4 gi|282163165|ref|YP_003355550.1| - 1.6e-47 160.9 0.0 1.8e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) DUF128 PF01995.11 gi|282163166|ref|YP_003355551.1| - 1.5e-85 285.8 0.5 1.9e-85 285.5 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|282163166|ref|YP_003355551.1| - 1.6e-25 88.6 2.2 4.5e-25 87.1 1.5 1.8 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_21 PF13276.1 gi|282163166|ref|YP_003355551.1| - 0.00015 21.6 0.2 0.00072 19.5 0.2 2.1 2 0 0 2 2 2 1 HTH-like domain CTP_synth_N PF06418.9 gi|282163167|ref|YP_003355552.1| - 8e-130 431.8 1.5 1.3e-129 431.2 1.0 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|282163167|ref|YP_003355552.1| - 9.6e-52 175.2 0.0 2.2e-51 174.0 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|282163167|ref|YP_003355552.1| - 1.5e-11 44.1 0.0 4.4e-10 39.3 0.0 2.3 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|282163167|ref|YP_003355552.1| - 7.7e-09 35.2 0.1 1.3e-08 34.4 0.1 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain NMT1_2 PF13379.1 gi|282163167|ref|YP_003355552.1| - 0.0054 16.1 0.0 0.024 14.0 0.0 1.9 2 0 0 2 2 2 1 NMT1-like family DUF1967 PF09269.6 gi|282163167|ref|YP_003355552.1| - 0.057 13.0 0.1 1.3 8.7 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1967) Thymidylate_kin PF02223.12 gi|282163168|ref|YP_003355553.1| - 2.9e-44 150.6 0.0 3.2e-44 150.5 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.1 gi|282163168|ref|YP_003355553.1| - 1.1e-06 28.7 0.0 1.2e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|282163168|ref|YP_003355553.1| - 3.1e-05 23.8 0.0 6.1e-05 22.9 0.0 1.5 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|282163168|ref|YP_003355553.1| - 6.6e-05 23.2 0.1 0.00017 21.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|282163168|ref|YP_003355553.1| - 0.00052 20.1 0.0 0.0037 17.4 0.0 2.1 1 1 1 2 2 2 1 AAA domain PPK2 PF03976.9 gi|282163168|ref|YP_003355553.1| - 0.0019 17.5 0.1 0.0036 16.6 0.0 1.5 2 0 0 2 2 2 1 Polyphosphate kinase 2 (PPK2) AAA_30 PF13604.1 gi|282163168|ref|YP_003355553.1| - 0.0026 17.3 0.1 0.004 16.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|282163168|ref|YP_003355553.1| - 0.016 16.0 0.0 0.026 15.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|282163168|ref|YP_003355553.1| - 0.038 13.0 0.2 0.22 10.6 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin AAA_19 PF13245.1 gi|282163168|ref|YP_003355553.1| - 0.062 13.0 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|282163168|ref|YP_003355553.1| - 0.063 13.1 0.0 0.32 10.8 0.0 2.0 1 1 1 2 2 2 0 AAA domain MobB PF03205.9 gi|282163168|ref|YP_003355553.1| - 0.076 12.7 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.5 gi|282163168|ref|YP_003355553.1| - 0.092 11.9 0.2 0.28 10.3 0.0 1.8 2 1 0 2 2 2 0 Chromatin associated protein KTI12 dNK PF01712.14 gi|282163168|ref|YP_003355553.1| - 0.092 12.6 0.0 0.16 11.8 0.0 1.6 1 1 0 1 1 1 0 Deoxynucleoside kinase SspH PF08141.7 gi|282163168|ref|YP_003355553.1| - 0.11 12.6 0.0 1.3 9.1 0.0 2.4 2 0 0 2 2 2 0 Small acid-soluble spore protein H family MMPL PF03176.10 gi|282163170|ref|YP_003355555.1| - 0.23 10.1 7.5 0.25 10.0 5.2 1.1 1 0 0 1 1 1 0 MMPL family UNC-93 PF05978.11 gi|282163170|ref|YP_003355555.1| - 0.43 10.0 3.9 0.58 9.6 0.3 1.9 1 1 1 2 2 2 0 Ion channel regulatory protein UNC-93 DUF4131 PF13567.1 gi|282163170|ref|YP_003355555.1| - 0.61 9.4 4.7 0.7 9.2 3.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF1772 PF08592.6 gi|282163170|ref|YP_003355555.1| - 2.4 7.9 5.2 3.1 7.5 3.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) PMP1_2 PF08114.6 gi|282163170|ref|YP_003355555.1| - 2.5 7.6 7.8 0.26 10.7 0.6 2.1 2 0 0 2 2 2 0 ATPase proteolipid family DUF2892 PF11127.3 gi|282163170|ref|YP_003355555.1| - 5.4 6.9 10.3 1.5 8.7 4.8 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) MarR_2 PF12802.2 gi|282163172|ref|YP_003355557.1| - 1.6e-06 27.7 0.1 2.9e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|282163172|ref|YP_003355557.1| - 2.6e-06 27.0 0.0 4.7e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|282163172|ref|YP_003355557.1| - 7e-05 22.1 0.1 0.00034 19.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|282163172|ref|YP_003355557.1| - 0.00017 21.2 0.0 0.00027 20.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|282163172|ref|YP_003355557.1| - 0.00029 21.0 0.0 0.00062 20.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|282163172|ref|YP_003355557.1| - 0.00077 19.2 0.0 0.0014 18.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF387 PF04079.11 gi|282163172|ref|YP_003355557.1| - 0.0041 16.5 0.0 0.0084 15.4 0.0 1.4 1 1 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) TFIIE_alpha PF02002.12 gi|282163172|ref|YP_003355557.1| - 0.0067 15.9 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.5 gi|282163172|ref|YP_003355557.1| - 0.0076 15.8 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|282163172|ref|YP_003355557.1| - 0.018 14.4 0.1 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.14 gi|282163172|ref|YP_003355557.1| - 0.019 14.9 0.2 0.078 12.9 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|282163172|ref|YP_003355557.1| - 0.024 14.7 0.0 0.045 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|282163172|ref|YP_003355557.1| - 0.038 14.0 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Phage_rep_O PF04492.8 gi|282163172|ref|YP_003355557.1| - 0.05 13.8 0.0 0.088 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage replication protein O Penicillinase_R PF03965.11 gi|282163172|ref|YP_003355557.1| - 0.053 13.6 0.1 0.08 13.0 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor Fer4 PF00037.22 gi|282163173|ref|YP_003355558.1| - 3.4e-15 54.8 13.2 6.1e-08 31.9 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282163173|ref|YP_003355558.1| - 4.2e-11 42.4 24.2 6.9e-08 32.1 9.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282163173|ref|YP_003355558.1| - 5.8e-11 41.7 13.0 6.4e-06 25.8 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282163173|ref|YP_003355558.1| - 1.9e-10 40.9 12.1 3.7e-10 40.0 8.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282163173|ref|YP_003355558.1| - 2.5e-10 40.9 7.8 6.2e-05 23.6 0.3 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|282163173|ref|YP_003355558.1| - 2.1e-09 37.4 9.5 0.00018 21.6 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282163173|ref|YP_003355558.1| - 6.7e-08 32.0 13.9 0.0009 19.0 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|282163173|ref|YP_003355558.1| - 1.1e-06 28.4 14.8 0.0019 18.3 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282163173|ref|YP_003355558.1| - 1.6e-06 27.8 11.3 4.3e-06 26.4 7.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282163173|ref|YP_003355558.1| - 1.7e-06 27.9 25.7 0.0001 22.2 9.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|282163173|ref|YP_003355558.1| - 5.3e-06 26.6 19.3 0.0093 16.4 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|282163173|ref|YP_003355558.1| - 8.7e-05 23.0 10.2 0.0033 17.9 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|282163173|ref|YP_003355558.1| - 0.00016 22.0 12.2 0.034 14.5 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|282163173|ref|YP_003355558.1| - 0.00016 21.9 13.9 0.01 16.1 1.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282163173|ref|YP_003355558.1| - 0.003 17.9 17.5 0.024 15.0 3.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Desulfoferrod_N PF06397.7 gi|282163173|ref|YP_003355558.1| - 0.064 12.6 9.5 0.16 11.3 0.9 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Fer4_11 PF13247.1 gi|282163173|ref|YP_003355558.1| - 0.2 11.5 7.0 1.7 8.5 0.4 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-Paramyx-P PF13008.2 gi|282163173|ref|YP_003355558.1| - 0.53 9.5 7.9 1.9 7.7 0.5 2.1 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein Mut7-C PF01927.11 gi|282163173|ref|YP_003355558.1| - 1.1 9.1 4.2 1.4 8.8 2.9 1.0 1 0 0 1 1 1 0 Mut7-C RNAse domain Stig1 PF04885.8 gi|282163173|ref|YP_003355558.1| - 1.7 8.8 10.0 3.4 7.8 7.0 1.5 1 1 0 1 1 1 0 Stigma-specific protein, Stig1 MSSP PF03940.8 gi|282163173|ref|YP_003355558.1| - 3.3 7.1 12.3 2.5 7.5 1.8 2.1 2 0 0 2 2 2 0 Male specific sperm protein zf-CXXC PF02008.15 gi|282163173|ref|YP_003355558.1| - 5.2 6.9 11.4 2.5 7.9 1.4 2.2 2 0 0 2 2 2 0 CXXC zinc finger domain Fer4_19 PF06902.6 gi|282163173|ref|YP_003355558.1| - 5.8 6.8 8.2 1.4e+02 2.4 5.7 2.9 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer2_2 PF01799.15 gi|282163173|ref|YP_003355558.1| - 8 6.4 6.8 9.6 6.1 0.1 2.1 1 1 1 2 2 2 0 [2Fe-2S] binding domain FAD_binding_3 PF01494.14 gi|282163174|ref|YP_003355559.1| - 2.2e-19 69.7 0.4 1.2e-10 41.0 0.0 2.4 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|282163174|ref|YP_003355559.1| - 2.1e-13 49.9 1.6 5e-08 32.2 0.4 2.5 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|282163174|ref|YP_003355559.1| - 7.5e-13 48.1 3.4 1.1e-06 27.8 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|282163174|ref|YP_003355559.1| - 2.3e-11 43.4 5.6 4.9e-11 42.3 3.9 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|282163174|ref|YP_003355559.1| - 1.5e-09 36.8 0.3 4e-09 35.4 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|282163174|ref|YP_003355559.1| - 1.1e-08 35.1 2.3 6e-08 32.8 1.6 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|282163174|ref|YP_003355559.1| - 1.4e-07 31.3 0.0 4.8e-07 29.7 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|282163174|ref|YP_003355559.1| - 3.2e-07 29.3 0.5 0.01 14.5 0.1 2.8 2 1 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.17 gi|282163174|ref|YP_003355559.1| - 1.9e-06 26.9 3.5 5.3e-06 25.5 2.4 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|282163174|ref|YP_003355559.1| - 2.7e-06 26.5 0.1 7.3e-05 21.8 0.1 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.12 gi|282163174|ref|YP_003355559.1| - 3.4e-06 26.3 0.2 9.5e-06 24.8 0.0 1.8 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.1 gi|282163174|ref|YP_003355559.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|282163174|ref|YP_003355559.1| - 0.023 13.5 0.0 0.04 12.7 0.0 1.4 1 0 0 1 1 1 0 Squalene epoxidase Pyr_redox PF00070.22 gi|282163174|ref|YP_003355559.1| - 0.034 14.5 2.2 0.13 12.6 0.1 2.8 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|282163174|ref|YP_003355559.1| - 0.046 12.0 0.0 0.13 10.5 0.0 1.6 2 0 0 2 2 2 0 GDP dissociation inhibitor 3HCDH_N PF02737.13 gi|282163174|ref|YP_003355559.1| - 0.06 12.9 0.3 0.06 12.9 0.2 2.3 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|282163174|ref|YP_003355559.1| - 0.19 11.9 0.9 1.2 9.3 0.6 2.4 1 1 0 1 1 1 0 Putative NAD(P)-binding HypA PF01155.14 gi|282163177|ref|YP_003355562.1| - 1.3e-05 24.8 0.1 1.4e-05 24.7 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|282163177|ref|YP_003355562.1| - 4.9e-05 23.0 0.7 0.095 12.5 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-IS66 PF13005.2 gi|282163177|ref|YP_003355562.1| - 0.0013 18.6 0.3 0.94 9.5 0.0 2.2 2 0 0 2 2 2 2 zinc-finger binding domain of transposase IS66 Prok-RING_1 PF14446.1 gi|282163177|ref|YP_003355562.1| - 0.0042 16.8 2.2 0.0056 16.3 1.5 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|282163177|ref|YP_003355562.1| - 0.0043 16.9 7.2 0.05 13.5 5.0 2.1 1 1 0 1 1 1 1 Zinc ribbon domain TFIIS_C PF01096.13 gi|282163177|ref|YP_003355562.1| - 0.0052 16.3 2.5 0.31 10.6 0.5 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS91 PF14319.1 gi|282163177|ref|YP_003355562.1| - 0.023 14.1 0.4 0.033 13.6 0.3 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF35_N PF12172.3 gi|282163177|ref|YP_003355562.1| - 0.025 14.4 2.7 0.055 13.3 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|282163177|ref|YP_003355562.1| - 0.025 14.3 1.9 0.028 14.2 1.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|282163177|ref|YP_003355562.1| - 0.025 14.3 0.2 0.03 14.1 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.1 gi|282163177|ref|YP_003355562.1| - 0.029 14.0 1.8 0.9 9.2 0.1 2.4 2 1 0 2 2 2 0 Nudix N-terminal NOB1_Zn_bind PF08772.6 gi|282163177|ref|YP_003355562.1| - 0.032 14.0 0.3 0.034 13.9 0.2 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like FYVE PF01363.16 gi|282163177|ref|YP_003355562.1| - 0.057 13.3 1.3 0.074 12.9 0.9 1.1 1 0 0 1 1 1 0 FYVE zinc finger DUF3279 PF11682.3 gi|282163177|ref|YP_003355562.1| - 0.073 12.6 0.2 0.078 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) FYDLN_acid PF09538.5 gi|282163177|ref|YP_003355562.1| - 0.084 13.4 1.8 0.098 13.2 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-H2C2_2 PF13465.1 gi|282163177|ref|YP_003355562.1| - 0.14 12.5 2.0 0.14 12.5 1.4 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-ISL3 PF14690.1 gi|282163177|ref|YP_003355562.1| - 0.15 12.0 6.6 2.7 8.0 1.2 2.4 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1 PF03811.8 gi|282163177|ref|YP_003355562.1| - 0.2 11.2 3.8 1.6 8.2 0.2 2.2 2 0 0 2 2 2 0 InsA N-terminal domain DUF2072 PF09845.4 gi|282163177|ref|YP_003355562.1| - 0.22 11.4 1.7 0.26 11.2 1.2 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-RING_3 PF14369.1 gi|282163177|ref|YP_003355562.1| - 0.25 11.3 4.6 2.7 8.0 3.1 2.1 1 1 1 2 2 2 0 zinc-finger DUF1272 PF06906.6 gi|282163177|ref|YP_003355562.1| - 0.28 11.0 3.7 0.54 10.1 2.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) DnaJ_CXXCXGXG PF00684.14 gi|282163177|ref|YP_003355562.1| - 0.45 10.6 4.4 2.7 8.1 3.1 1.5 1 1 0 1 1 1 0 DnaJ central domain zf-HIT PF04438.11 gi|282163177|ref|YP_003355562.1| - 0.86 9.2 5.4 0.74 9.5 0.5 2.1 2 0 0 2 2 2 0 HIT zinc finger DUF3797 PF12677.2 gi|282163177|ref|YP_003355562.1| - 1.1 8.9 6.3 5.7 6.6 1.1 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TF_Zn_Ribbon PF08271.7 gi|282163177|ref|YP_003355562.1| - 1.1 8.5 6.2 7.3 6.0 4.3 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding Rubredoxin PF00301.15 gi|282163177|ref|YP_003355562.1| - 1.4 8.8 5.7 67 3.4 4.0 2.2 1 1 0 1 1 1 0 Rubredoxin zf-C2H2 PF00096.21 gi|282163177|ref|YP_003355562.1| - 1.7 9.1 6.2 0.96 9.9 0.5 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Fumerase_C PF05683.7 gi|282163178|ref|YP_003355563.1| - 1.2e-49 168.2 0.1 1.4e-49 168.0 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.9 gi|282163179|ref|YP_003355564.1| - 1.2e-94 316.4 0.0 1.4e-94 316.2 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) UPF0118 PF01594.11 gi|282163180|ref|YP_003355565.1| - 3.7e-44 151.0 39.2 6.9e-44 150.1 27.2 1.4 1 1 0 1 1 1 1 Domain of unknown function DUF20 UPF0004 PF00919.15 gi|282163181|ref|YP_003355566.1| - 1.5e-18 66.4 0.3 2.5e-18 65.6 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.16 gi|282163181|ref|YP_003355566.1| - 2.1e-17 63.7 0.0 4.3e-17 62.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.15 gi|282163181|ref|YP_003355566.1| - 1e-05 25.2 0.0 2.2e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 TRAM domain MCR_beta PF02241.13 gi|282163182|ref|YP_003355567.1| - 3.4e-126 419.6 2.3 3.4e-126 419.6 1.6 1.6 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|282163182|ref|YP_003355567.1| - 8.9e-75 250.1 3.1 8.9e-75 250.1 2.1 1.7 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.9 gi|282163183|ref|YP_003355568.1| - 8.3e-37 126.0 0.0 1e-36 125.8 0.0 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_C PF04609.7 gi|282163184|ref|YP_003355569.1| - 1e-38 132.7 4.5 7.6e-35 119.9 0.2 3.0 1 1 2 3 3 3 3 Methyl-coenzyme M reductase operon protein C MCR_gamma PF02240.11 gi|282163185|ref|YP_003355570.1| - 1.1e-119 398.0 0.1 1.3e-119 397.8 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.10 gi|282163186|ref|YP_003355571.1| - 1.6e-135 450.4 0.9 2.1e-135 450.0 0.6 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|282163186|ref|YP_003355571.1| - 2e-67 224.9 5.3 4.2e-67 223.9 3.6 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain FdtA PF05523.6 gi|282163187|ref|YP_003355572.1| - 1.5e-08 34.2 0.0 1.6e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal dTDP_sugar_isom PF00908.12 gi|282163187|ref|YP_003355572.1| - 5.4e-08 32.3 0.0 7.3e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cupin_2 PF07883.6 gi|282163187|ref|YP_003355572.1| - 0.09 12.2 0.0 2.8 7.4 0.0 2.2 2 0 0 2 2 2 0 Cupin domain PvlArgDC PF01862.11 gi|282163188|ref|YP_003355573.1| - 4.6e-63 211.7 0.0 5e-63 211.5 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DUF134 PF02001.11 gi|282163189|ref|YP_003355574.1| - 3.8e-23 81.4 0.1 5.5e-23 80.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|282163189|ref|YP_003355574.1| - 3.1e-05 23.3 0.0 5e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.7 gi|282163189|ref|YP_003355574.1| - 0.0017 17.9 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain RNA_POL_M_15KD PF02150.11 gi|282163189|ref|YP_003355574.1| - 0.0068 16.0 2.5 0.02 14.5 1.7 1.9 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit HypA PF01155.14 gi|282163189|ref|YP_003355574.1| - 0.01 15.4 1.4 0.017 14.7 1.0 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family HTH_8 PF02954.14 gi|282163189|ref|YP_003355574.1| - 0.057 12.9 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_11 PF08279.7 gi|282163189|ref|YP_003355574.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.1 gi|282163189|ref|YP_003355574.1| - 0.12 12.0 0.0 0.28 10.9 0.0 1.7 1 1 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.1 gi|282163189|ref|YP_003355574.1| - 0.15 12.2 0.2 0.28 11.3 0.0 1.5 2 0 0 2 2 2 0 Winged helix-turn helix TF_Zn_Ribbon PF08271.7 gi|282163189|ref|YP_003355574.1| - 0.32 10.3 4.7 2.2 7.6 0.2 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|282163189|ref|YP_003355574.1| - 0.51 10.3 6.5 0.16 11.9 2.1 2.0 2 1 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|282163189|ref|YP_003355574.1| - 2.1 7.9 7.6 0.39 10.2 1.3 2.5 2 1 0 2 2 2 0 InsA N-terminal domain Nitro_FeMo-Co PF02579.12 gi|282163190|ref|YP_003355575.1| - 1.2e-20 73.3 0.0 1.5e-20 73.0 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ParA PF10609.4 gi|282163191|ref|YP_003355576.1| - 7.4e-32 109.0 0.1 1.9e-31 107.7 0.1 1.7 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|282163191|ref|YP_003355576.1| - 3.3e-23 82.1 0.0 4.8e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|282163191|ref|YP_003355576.1| - 3.7e-08 32.7 0.0 5.8e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|282163191|ref|YP_003355576.1| - 9.1e-07 28.9 0.0 7.4e-06 25.9 0.0 2.1 2 1 1 3 3 3 1 AAA domain ArsA_ATPase PF02374.10 gi|282163191|ref|YP_003355576.1| - 1.9e-06 27.1 2.9 2.8e-06 26.6 0.9 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|282163191|ref|YP_003355576.1| - 1.2e-05 25.0 0.5 0.12 11.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.13 gi|282163191|ref|YP_003355576.1| - 0.00061 19.0 0.2 0.0071 15.5 0.2 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArgK PF03308.11 gi|282163191|ref|YP_003355576.1| - 0.0013 17.6 0.0 0.0019 17.0 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_25 PF13481.1 gi|282163191|ref|YP_003355576.1| - 0.0013 18.1 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|282163191|ref|YP_003355576.1| - 0.0015 17.9 0.2 0.0087 15.4 0.1 1.9 2 0 0 2 2 2 1 YhjQ protein MobB PF03205.9 gi|282163191|ref|YP_003355576.1| - 0.0019 17.8 0.2 0.012 15.3 0.1 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B VirC1 PF07015.6 gi|282163191|ref|YP_003355576.1| - 0.0047 16.0 0.0 0.0083 15.2 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_30 PF13604.1 gi|282163191|ref|YP_003355576.1| - 0.019 14.5 0.3 0.031 13.8 0.2 1.3 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|282163191|ref|YP_003355576.1| - 0.028 14.0 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF258 PF03193.11 gi|282163191|ref|YP_003355576.1| - 0.042 13.0 0.1 0.072 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|282163191|ref|YP_003355576.1| - 0.08 12.3 0.3 0.13 11.6 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|282163191|ref|YP_003355576.1| - 0.091 12.1 0.3 0.13 11.7 0.2 1.2 1 0 0 1 1 1 0 AAA-like domain NTPase_1 PF03266.10 gi|282163191|ref|YP_003355576.1| - 0.094 12.4 0.4 0.22 11.2 0.2 1.6 2 0 0 2 2 2 0 NTPase AAA_29 PF13555.1 gi|282163191|ref|YP_003355576.1| - 0.12 11.9 0.1 0.27 10.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain KTI12 PF08433.5 gi|282163191|ref|YP_003355576.1| - 0.16 11.1 0.0 0.28 10.3 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ABC_tran PF00005.22 gi|282163192|ref|YP_003355577.1| - 5.1e-52 175.8 0.0 1.2e-26 93.6 0.0 2.6 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|282163192|ref|YP_003355577.1| - 1.4e-10 41.6 3.0 0.046 13.6 0.0 4.1 3 1 1 4 4 4 3 AAA domain DUF258 PF03193.11 gi|282163192|ref|YP_003355577.1| - 4.5e-08 32.4 0.8 0.0013 17.9 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|282163192|ref|YP_003355577.1| - 1.2e-07 31.8 0.0 0.025 14.5 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_15 PF13175.1 gi|282163192|ref|YP_003355577.1| - 2.1e-06 27.0 3.1 0.09 11.8 0.0 4.0 4 0 0 4 4 4 1 AAA ATPase domain SMC_N PF02463.14 gi|282163192|ref|YP_003355577.1| - 1.1e-05 24.8 2.9 0.026 13.7 0.0 3.9 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.4 gi|282163192|ref|YP_003355577.1| - 0.0001 21.8 0.0 0.31 10.5 0.0 2.7 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.1 gi|282163192|ref|YP_003355577.1| - 0.0001 23.1 3.8 0.15 12.8 0.4 3.1 3 1 0 3 3 2 2 AAA domain AAA_29 PF13555.1 gi|282163192|ref|YP_003355577.1| - 0.0001 21.7 1.2 0.34 10.4 0.0 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|282163192|ref|YP_003355577.1| - 0.00011 22.5 0.5 0.39 11.0 0.0 2.8 3 0 0 3 3 2 2 AAA domain SbcCD_C PF13558.1 gi|282163192|ref|YP_003355577.1| - 0.00021 21.1 0.0 0.82 9.6 0.0 3.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|282163192|ref|YP_003355577.1| - 0.00023 21.0 3.5 0.53 10.2 0.4 3.2 3 1 0 3 3 3 2 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|282163192|ref|YP_003355577.1| - 0.00028 21.0 0.7 0.34 11.0 0.0 3.1 4 0 0 4 4 2 1 AAA domain AAA_10 PF12846.2 gi|282163192|ref|YP_003355577.1| - 0.00033 20.2 1.1 1.5 8.1 0.0 3.2 3 0 0 3 3 3 2 AAA-like domain AAA_25 PF13481.1 gi|282163192|ref|YP_003355577.1| - 0.00042 19.7 0.1 7.1 5.9 0.0 3.3 3 0 0 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|282163192|ref|YP_003355577.1| - 0.0006 19.3 0.1 0.44 9.9 0.0 2.5 2 0 0 2 2 2 1 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|282163192|ref|YP_003355577.1| - 0.00085 18.9 0.6 0.75 9.4 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 PIF1 PF05970.9 gi|282163192|ref|YP_003355577.1| - 0.0012 17.8 0.1 0.7 8.7 0.0 2.9 3 0 0 3 3 3 1 PIF1-like helicase NB-ARC PF00931.17 gi|282163192|ref|YP_003355577.1| - 0.003 16.4 1.4 0.067 12.0 0.1 2.3 2 0 0 2 2 2 1 NB-ARC domain MobB PF03205.9 gi|282163192|ref|YP_003355577.1| - 0.0037 16.9 0.2 1.2 8.8 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ATP-synt_ab PF00006.20 gi|282163192|ref|YP_003355577.1| - 0.0047 16.4 0.3 0.34 10.3 0.0 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Miro PF08477.8 gi|282163192|ref|YP_003355577.1| - 0.0081 16.6 0.3 4.3 7.8 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein PRK PF00485.13 gi|282163192|ref|YP_003355577.1| - 0.011 15.3 0.9 2.4 7.6 0.0 2.9 3 0 0 3 3 3 0 Phosphoribulokinase / Uridine kinase family FeoB_N PF02421.13 gi|282163192|ref|YP_003355577.1| - 0.012 14.8 1.1 10 5.3 0.0 3.4 3 0 0 3 3 3 0 Ferrous iron transport protein B DUF87 PF01935.12 gi|282163192|ref|YP_003355577.1| - 0.015 15.0 1.3 10 5.8 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function DUF87 T2SE PF00437.15 gi|282163192|ref|YP_003355577.1| - 0.017 13.9 1.7 0.21 10.4 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_28 PF13521.1 gi|282163192|ref|YP_003355577.1| - 0.019 14.9 2.5 3.4 7.6 0.3 3.3 3 0 0 3 3 3 0 AAA domain zf-IS66 PF13005.2 gi|282163192|ref|YP_003355577.1| - 0.021 14.7 0.1 0.064 13.2 0.1 1.8 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 KAP_NTPase PF07693.9 gi|282163192|ref|YP_003355577.1| - 0.032 13.2 0.0 3.6 6.4 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain IstB_IS21 PF01695.12 gi|282163192|ref|YP_003355577.1| - 0.038 13.3 0.7 2.2 7.6 0.0 2.7 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_30 PF13604.1 gi|282163192|ref|YP_003355577.1| - 0.041 13.4 0.1 3.8 7.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|282163192|ref|YP_003355577.1| - 0.047 14.0 4.3 3.8 7.7 0.9 2.3 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|282163192|ref|YP_003355577.1| - 0.051 12.7 0.4 4.6 6.4 0.0 2.6 3 0 0 3 3 3 0 PhoH-like protein AAA PF00004.24 gi|282163192|ref|YP_003355577.1| - 0.053 13.7 1.3 23 5.1 0.0 3.2 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|282163192|ref|YP_003355577.1| - 0.07 13.3 0.1 9.6 6.4 0.0 2.5 2 0 0 2 2 2 0 RNA helicase Pox_A32 PF04665.7 gi|282163192|ref|YP_003355577.1| - 0.12 11.6 0.7 1.7 7.9 0.0 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein cobW PF02492.14 gi|282163192|ref|YP_003355577.1| - 0.14 11.5 4.1 5 6.5 0.1 3.1 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.5 gi|282163192|ref|YP_003355577.1| - 0.15 11.2 0.1 14 4.8 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Zeta_toxin PF06414.7 gi|282163192|ref|YP_003355577.1| - 0.15 11.1 0.1 1.3 8.1 0.1 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_24 PF13479.1 gi|282163192|ref|YP_003355577.1| - 0.15 11.6 1.0 16 5.0 0.2 2.5 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|282163192|ref|YP_003355577.1| - 0.2 10.7 3.5 5.7 5.9 0.1 3.1 3 0 0 3 3 3 0 KaiC NACHT PF05729.7 gi|282163192|ref|YP_003355577.1| - 0.39 10.3 2.6 4 7.0 0.1 2.8 3 0 0 3 3 3 0 NACHT domain Complex1_49kDa PF00346.14 gi|282163193|ref|YP_003355578.1| - 1.2e-45 155.6 0.1 9.5e-36 123.1 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|282163193|ref|YP_003355578.1| - 6.7e-10 38.3 1.9 4.2e-09 35.7 0.0 2.6 2 1 0 2 2 2 1 Nickel-dependent hydrogenase Abhydrolase_6 PF12697.2 gi|282163194|ref|YP_003355579.1| - 3.3e-21 76.2 0.0 4.2e-21 75.8 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|282163194|ref|YP_003355579.1| - 1.9e-13 50.3 0.0 7e-13 48.5 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|282163194|ref|YP_003355579.1| - 2e-10 40.3 0.0 3.8e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|282163194|ref|YP_003355579.1| - 4.1e-07 29.8 0.0 6.3e-06 25.9 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|282163194|ref|YP_003355579.1| - 0.00036 20.0 0.0 0.0076 15.7 0.0 2.3 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Ser_hydrolase PF06821.8 gi|282163194|ref|YP_003355579.1| - 0.0055 16.3 0.0 0.14 11.7 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase Lipase_3 PF01764.20 gi|282163194|ref|YP_003355579.1| - 0.0063 16.1 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Lipase (class 3) Peptidase_S9 PF00326.16 gi|282163194|ref|YP_003355579.1| - 0.038 13.1 0.0 0.07 12.3 0.0 1.3 1 0 0 1 1 1 0 Prolyl oligopeptidase family DUF2974 PF11187.3 gi|282163194|ref|YP_003355579.1| - 0.062 12.6 0.0 0.088 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) DLH PF01738.13 gi|282163194|ref|YP_003355579.1| - 0.072 12.3 0.0 0.47 9.6 0.0 2.0 2 0 0 2 2 2 0 Dienelactone hydrolase family Peptidase_S15 PF02129.13 gi|282163194|ref|YP_003355579.1| - 0.093 12.1 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) Nitro_FeMo-Co PF02579.12 gi|282163195|ref|YP_003355580.1| - 1e-17 64.0 0.1 1.1e-17 63.8 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor CbiA PF01656.18 gi|282163196|ref|YP_003355581.1| - 1.7e-29 102.6 0.0 3.3e-29 101.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|282163196|ref|YP_003355581.1| - 8.2e-10 37.8 18.1 3.7e-07 29.4 1.2 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_NifH PF00142.13 gi|282163196|ref|YP_003355581.1| - 1.1e-08 34.6 0.1 4.2e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_16 PF13484.1 gi|282163196|ref|YP_003355581.1| - 7.8e-07 29.7 12.7 0.011 16.4 3.1 3.2 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain MipZ PF09140.6 gi|282163196|ref|YP_003355581.1| - 2e-06 27.0 0.0 2.9e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ Fer4_6 PF12837.2 gi|282163196|ref|YP_003355581.1| - 2.4e-06 27.1 17.9 0.00024 20.8 2.7 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282163196|ref|YP_003355581.1| - 4.3e-05 23.8 9.3 4.3e-05 23.8 6.5 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain AAA_31 PF13614.1 gi|282163196|ref|YP_003355581.1| - 5.4e-05 23.1 0.1 0.00052 19.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain Fer4_9 PF13187.1 gi|282163196|ref|YP_003355581.1| - 0.00011 22.3 14.1 0.00024 21.2 7.1 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.10 gi|282163196|ref|YP_003355581.1| - 0.00012 21.2 1.2 0.0002 20.4 0.9 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_10 PF13237.1 gi|282163196|ref|YP_003355581.1| - 0.00019 21.1 8.3 0.00019 21.1 5.8 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282163196|ref|YP_003355581.1| - 0.00024 20.8 5.1 0.00024 20.8 3.5 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain AAA_25 PF13481.1 gi|282163196|ref|YP_003355581.1| - 0.00038 19.9 0.0 0.00068 19.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_2 PF12797.2 gi|282163196|ref|YP_003355581.1| - 0.0091 15.8 2.1 0.0091 15.8 1.4 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain AAA_19 PF13245.1 gi|282163196|ref|YP_003355581.1| - 0.0094 15.6 0.5 0.03 14.0 0.4 1.9 1 0 0 1 1 1 1 Part of AAA domain ParA PF10609.4 gi|282163196|ref|YP_003355581.1| - 0.013 15.3 0.1 0.04 13.7 0.0 1.8 1 0 0 1 1 1 0 ParA/MinD ATPase like Fer4_15 PF13459.1 gi|282163196|ref|YP_003355581.1| - 0.039 14.5 7.1 0.43 11.1 0.7 2.8 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|282163196|ref|YP_003355581.1| - 0.049 13.6 13.8 0.42 10.6 8.0 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282163196|ref|YP_003355581.1| - 0.052 13.9 12.6 0.14 12.4 0.6 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain NAD_binding_10 PF13460.1 gi|282163196|ref|YP_003355581.1| - 0.085 12.8 0.4 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 NADH(P)-binding Fer4_4 PF12800.2 gi|282163196|ref|YP_003355581.1| - 0.1 13.0 21.2 0.23 11.8 2.8 3.8 3 0 0 3 3 3 0 4Fe-4S binding domain VirC1 PF07015.6 gi|282163196|ref|YP_003355581.1| - 0.11 11.5 0.2 0.17 10.8 0.2 1.3 1 0 0 1 1 1 0 VirC1 protein Fer4_3 PF12798.2 gi|282163196|ref|YP_003355581.1| - 0.23 12.0 19.8 0.12 12.9 3.5 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|282163196|ref|YP_003355581.1| - 0.65 10.4 8.2 6.4 7.2 0.6 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain CbiA PF01656.18 gi|282163197|ref|YP_003355582.1| - 1.2e-26 93.3 0.0 1.7e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|282163197|ref|YP_003355582.1| - 4.8e-13 48.1 18.4 1.8e-06 27.3 4.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|282163197|ref|YP_003355582.1| - 4.4e-09 35.8 18.1 4e-05 23.2 4.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282163197|ref|YP_003355582.1| - 1.6e-08 33.9 16.2 0.00056 19.6 3.9 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282163197|ref|YP_003355582.1| - 4.6e-08 33.3 16.0 1.3e-07 31.8 11.1 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282163197|ref|YP_003355582.1| - 3.2e-07 30.0 10.5 9.5e-07 28.5 7.3 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282163197|ref|YP_003355582.1| - 2.4e-06 27.3 10.4 6e-06 26.0 7.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282163197|ref|YP_003355582.1| - 4e-06 27.4 10.8 0.00029 21.5 1.5 2.6 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|282163197|ref|YP_003355582.1| - 9.7e-06 26.0 8.4 0.0046 17.4 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|282163197|ref|YP_003355582.1| - 0.00017 21.6 15.6 0.024 14.9 2.8 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|282163197|ref|YP_003355582.1| - 0.00023 21.3 14.3 0.001 19.2 10.0 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain GTP_EFTU PF00009.22 gi|282163197|ref|YP_003355582.1| - 0.00026 20.4 0.0 0.0036 16.7 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_19 PF13245.1 gi|282163197|ref|YP_003355582.1| - 0.00087 18.9 3.3 0.25 11.1 0.5 2.5 2 0 0 2 2 2 2 Part of AAA domain Fer4_17 PF13534.1 gi|282163197|ref|YP_003355582.1| - 0.0028 17.9 11.5 0.15 12.4 0.3 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain AAA_26 PF13500.1 gi|282163197|ref|YP_003355582.1| - 0.003 17.1 0.2 0.013 15.0 0.2 1.9 1 1 0 1 1 1 1 AAA domain Fer4_8 PF13183.1 gi|282163197|ref|YP_003355582.1| - 0.0037 17.2 14.5 0.084 12.9 10.4 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain ArsA_ATPase PF02374.10 gi|282163197|ref|YP_003355582.1| - 0.0072 15.4 0.9 0.011 14.8 0.6 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|282163197|ref|YP_003355582.1| - 0.018 14.4 0.0 0.031 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|282163197|ref|YP_003355582.1| - 0.037 13.6 0.1 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|282163197|ref|YP_003355582.1| - 0.1 12.1 0.1 1.8 8.1 0.1 2.4 3 0 0 3 3 2 0 AAA domain Fer4_18 PF13746.1 gi|282163197|ref|YP_003355582.1| - 0.11 12.9 15.8 0.88 10.0 2.2 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain ParA PF10609.4 gi|282163197|ref|YP_003355582.1| - 0.14 12.0 0.0 0.4 10.5 0.0 1.8 2 0 0 2 2 1 0 ParA/MinD ATPase like AAA_17 PF13207.1 gi|282163197|ref|YP_003355582.1| - 0.16 12.7 2.0 0.94 10.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|282163197|ref|YP_003355582.1| - 0.22 11.6 0.6 1.6 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Fer4_11 PF13247.1 gi|282163197|ref|YP_003355582.1| - 0.26 11.2 8.0 7.2 6.5 4.8 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282163197|ref|YP_003355582.1| - 0.55 10.6 17.9 1.2 9.6 3.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Nitro_FeMo-Co PF02579.12 gi|282163198|ref|YP_003355583.1| - 7.2e-21 74.0 0.0 8.1e-21 73.9 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor zf-dskA_traR PF01258.12 gi|282163199|ref|YP_003355584.1| - 1.9e-07 30.7 0.4 2.1e-07 30.5 0.3 1.2 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger zf-C4_Topoisom PF01396.14 gi|282163199|ref|YP_003355584.1| - 0.005 16.3 1.2 0.0079 15.6 0.8 1.3 1 1 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_5 PF13719.1 gi|282163199|ref|YP_003355584.1| - 0.017 14.6 0.4 0.029 13.9 0.2 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|282163199|ref|YP_003355584.1| - 0.021 14.0 0.1 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|282163199|ref|YP_003355584.1| - 0.022 14.4 0.5 0.04 13.6 0.2 1.6 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|282163199|ref|YP_003355584.1| - 0.042 13.5 0.0 0.042 13.5 0.0 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|282163199|ref|YP_003355584.1| - 0.044 13.2 0.9 0.05 13.1 0.6 1.3 1 1 0 1 1 1 0 zinc-ribbon domain YhfH PF14149.1 gi|282163199|ref|YP_003355584.1| - 0.045 13.5 0.1 0.058 13.1 0.1 1.2 1 0 0 1 1 1 0 YhfH-like protein zf-C2HC_2 PF13913.1 gi|282163199|ref|YP_003355584.1| - 0.14 11.8 0.5 0.26 11.0 0.1 1.6 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Nitro_FeMo-Co PF02579.12 gi|282163200|ref|YP_003355585.1| - 1e-18 67.1 0.0 1.2e-18 66.9 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor TM1506 PF08973.5 gi|282163200|ref|YP_003355585.1| - 0.04 13.4 0.1 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1893) Ribosomal_L10 PF00466.15 gi|282163200|ref|YP_003355585.1| - 0.07 13.0 0.3 0.13 12.2 0.2 1.4 1 0 0 1 1 1 0 Ribosomal protein L10 PG_binding_3 PF09374.5 gi|282163200|ref|YP_003355585.1| - 0.14 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Predicted Peptidoglycan domain DUF134 PF02001.11 gi|282163202|ref|YP_003355587.1| - 2.8e-23 81.8 0.1 3.3e-23 81.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|282163202|ref|YP_003355587.1| - 5.5e-08 32.1 0.1 8.3e-08 31.5 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.6 gi|282163202|ref|YP_003355587.1| - 9.8e-05 22.1 0.1 0.00012 21.7 0.0 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_11 PF08279.7 gi|282163202|ref|YP_003355587.1| - 0.0002 20.9 0.1 0.00029 20.4 0.1 1.3 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|282163202|ref|YP_003355587.1| - 0.00024 20.3 0.0 0.00038 19.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.7 gi|282163202|ref|YP_003355587.1| - 0.0013 18.2 0.1 0.0024 17.4 0.0 1.5 1 1 0 1 1 1 1 HTH DNA binding domain HTH_23 PF13384.1 gi|282163202|ref|YP_003355587.1| - 0.0048 16.5 0.0 0.0085 15.7 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_3 PF01381.17 gi|282163202|ref|YP_003355587.1| - 0.14 11.9 0.1 0.28 11.0 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix Lactamase_B PF00753.22 gi|282163204|ref|YP_003355589.1| - 7.2e-13 48.6 1.1 2.5e-12 46.8 0.8 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|282163204|ref|YP_003355589.1| - 2.5e-06 27.1 0.0 3.1e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|282163204|ref|YP_003355589.1| - 0.0019 17.9 0.0 0.0029 17.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HATPase_c PF02518.21 gi|282163205|ref|YP_003355590.1| - 3.1e-21 75.1 0.0 5.2e-21 74.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|282163205|ref|YP_003355590.1| - 2e-15 56.5 0.0 1e-14 54.2 0.0 2.2 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.1 gi|282163205|ref|YP_003355590.1| - 3e-14 53.2 0.0 9.5e-14 51.6 0.0 1.8 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|282163205|ref|YP_003355590.1| - 2.9e-09 36.9 0.0 5.5e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|282163205|ref|YP_003355590.1| - 2.3e-07 30.4 0.0 6e-07 29.0 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.2 gi|282163205|ref|YP_003355590.1| - 5.9e-05 23.0 0.0 0.00029 20.8 0.0 2.0 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|282163205|ref|YP_003355590.1| - 7.7e-05 22.4 0.0 0.00015 21.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF4118 PF13493.1 gi|282163205|ref|YP_003355590.1| - 0.0031 17.6 12.6 0.0057 16.8 8.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) PAS_3 PF08447.6 gi|282163205|ref|YP_003355590.1| - 0.014 15.4 0.0 0.06 13.4 0.0 2.0 1 1 0 1 1 1 0 PAS fold HATPase_c_3 PF13589.1 gi|282163205|ref|YP_003355590.1| - 0.017 14.7 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CutC PF03932.9 gi|282163205|ref|YP_003355590.1| - 0.034 13.4 0.0 0.057 12.6 0.0 1.3 1 0 0 1 1 1 0 CutC family DUF3488 PF11992.3 gi|282163205|ref|YP_003355590.1| - 0.51 8.9 4.0 0.76 8.3 2.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) HATPase_c PF02518.21 gi|282163206|ref|YP_003355591.1| - 2.5e-19 69.0 0.0 6.2e-19 67.7 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|282163206|ref|YP_003355591.1| - 2.5e-05 23.9 0.0 5.1e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|282163206|ref|YP_003355591.1| - 0.00052 19.6 0.0 0.00096 18.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|282163206|ref|YP_003355591.1| - 0.0018 18.0 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF4118 PF13493.1 gi|282163206|ref|YP_003355591.1| - 0.099 12.8 5.8 0.16 12.1 4.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) DUF202 PF02656.10 gi|282163208|ref|YP_003355593.1| - 2e-14 53.5 7.9 2e-14 53.5 5.5 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF202) SLAC1 PF03595.12 gi|282163208|ref|YP_003355593.1| - 0.00048 18.8 11.1 0.00052 18.7 7.7 1.1 1 0 0 1 1 1 1 Voltage-dependent anion channel DUF4181 PF13789.1 gi|282163208|ref|YP_003355593.1| - 0.048 13.5 7.4 0.062 13.2 5.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4181) ABC2_membrane_5 PF13346.1 gi|282163208|ref|YP_003355593.1| - 0.07 12.4 7.2 0.078 12.2 5.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein 7TMR-DISM_7TM PF07695.6 gi|282163208|ref|YP_003355593.1| - 0.54 9.8 11.3 0.66 9.6 7.8 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF3796 PF12676.2 gi|282163208|ref|YP_003355593.1| - 2.1 8.5 4.9 0.48 10.6 0.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3796) SPC25 PF06703.6 gi|282163208|ref|YP_003355593.1| - 2.4 7.6 4.9 1.4 8.4 2.2 1.5 1 1 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) MtrE PF04206.7 gi|282163209|ref|YP_003355594.1| - 9.2e-107 356.0 10.0 1e-106 355.8 7.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E MtrD PF04207.7 gi|282163210|ref|YP_003355595.1| - 2e-75 252.9 31.2 3.3e-54 183.6 9.6 2.0 1 1 1 2 2 2 2 Tetrahydromethanopterin S-methyltransferase, subunit D MtrC PF04211.8 gi|282163211|ref|YP_003355596.1| - 4.6e-74 248.7 21.6 5.6e-74 248.5 15.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C EamA PF00892.15 gi|282163211|ref|YP_003355596.1| - 0.034 14.1 1.6 0.034 14.1 1.1 4.0 3 1 1 4 4 4 0 EamA-like transporter family MtrB PF05440.7 gi|282163212|ref|YP_003355597.1| - 1.6e-26 92.1 0.0 1.8e-26 91.9 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrA PF04208.9 gi|282163213|ref|YP_003355598.1| - 9.2e-73 243.4 0.5 1.2e-72 243.0 0.4 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|282163213|ref|YP_003355598.1| - 0.075 12.2 1.8 0.23 10.7 1.2 1.8 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrF PF09472.5 gi|282163214|ref|YP_003355599.1| - 3.3e-22 77.5 0.3 3.7e-22 77.3 0.2 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrG PF04210.8 gi|282163215|ref|YP_003355600.1| - 6.7e-23 80.1 0.1 7.1e-23 80.0 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G MtrF PF09472.5 gi|282163215|ref|YP_003355600.1| - 0.11 11.7 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrH PF02007.13 gi|282163216|ref|YP_003355601.1| - 2.5e-114 381.2 0.7 2.9e-114 381.0 0.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit Na_H_Exchanger PF00999.16 gi|282163217|ref|YP_003355602.1| - 1.9e-65 220.8 46.7 1.1e-36 126.2 16.5 2.0 2 0 0 2 2 2 2 Sodium/hydrogen exchanger family TrkH PF02386.11 gi|282163218|ref|YP_003355603.1| - 1.4e-55 188.3 26.0 3.4e-55 187.0 14.7 2.2 2 0 0 2 2 2 2 Cation transport protein TrkA_N PF02254.13 gi|282163219|ref|YP_003355604.1| - 1.7e-23 82.8 3.8 2.8e-23 82.1 2.6 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|282163219|ref|YP_003355604.1| - 6.9e-15 54.3 0.5 6.9e-15 54.3 0.4 2.0 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_2 PF03446.10 gi|282163219|ref|YP_003355604.1| - 3.4e-06 26.9 0.3 7.9e-06 25.8 0.2 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|282163219|ref|YP_003355604.1| - 1.9e-05 23.8 1.3 2.4e-05 23.5 0.9 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|282163219|ref|YP_003355604.1| - 4.8e-05 23.7 0.7 0.00012 22.4 0.5 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|282163219|ref|YP_003355604.1| - 5.5e-05 23.2 0.6 9e-05 22.5 0.4 1.3 1 0 0 1 1 1 1 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|282163219|ref|YP_003355604.1| - 0.00035 20.0 0.4 0.00059 19.2 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|282163219|ref|YP_003355604.1| - 0.00044 20.4 0.9 0.00073 19.7 0.6 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|282163219|ref|YP_003355604.1| - 0.00071 18.7 0.2 0.0013 17.9 0.1 1.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SSB PF00436.20 gi|282163219|ref|YP_003355604.1| - 0.0025 17.6 0.1 0.011 15.5 0.0 1.9 2 0 0 2 2 2 1 Single-strand binding protein family 3HCDH_N PF02737.13 gi|282163219|ref|YP_003355604.1| - 0.0031 17.2 1.2 0.0076 15.9 0.8 1.6 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|282163219|ref|YP_003355604.1| - 0.0059 16.5 0.6 0.0096 15.8 0.4 1.4 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|282163219|ref|YP_003355604.1| - 0.0069 16.4 2.9 0.0092 16.0 0.6 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|282163219|ref|YP_003355604.1| - 0.0075 16.0 0.4 0.015 15.0 0.2 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.1 gi|282163219|ref|YP_003355604.1| - 0.0098 16.2 0.1 0.013 15.7 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain adh_short PF00106.20 gi|282163219|ref|YP_003355604.1| - 0.021 14.7 0.7 0.051 13.5 0.5 1.7 1 1 0 1 1 1 0 short chain dehydrogenase ApbA PF02558.11 gi|282163219|ref|YP_003355604.1| - 0.029 13.8 0.6 0.045 13.1 0.4 1.4 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.8 gi|282163219|ref|YP_003355604.1| - 0.068 12.4 0.7 0.13 11.5 0.5 1.5 1 0 0 1 1 1 0 NmrA-like family ThiF PF00899.16 gi|282163219|ref|YP_003355604.1| - 0.48 10.2 3.2 0.81 9.5 0.8 2.3 2 1 1 3 3 3 0 ThiF family DUF2114 PF09887.4 gi|282163220|ref|YP_003355605.1| - 2.7e-216 718.1 0.3 3.3e-216 717.8 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Cas_Csy1 PF09611.5 gi|282163220|ref|YP_003355605.1| - 0.067 12.1 0.0 0.098 11.5 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csy1) DUF1894 PF08979.6 gi|282163221|ref|YP_003355606.1| - 2.7e-33 113.8 0.0 3.3e-33 113.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF2098 PF09871.4 gi|282163223|ref|YP_003355608.1| - 7.7e-26 89.8 3.7 9e-26 89.6 2.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) DUF677 PF05055.7 gi|282163223|ref|YP_003355608.1| - 0.049 12.2 0.9 0.051 12.2 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF677) YcaO PF02624.11 gi|282163224|ref|YP_003355609.1| - 3.6e-87 292.9 0.0 4.4e-87 292.6 0.0 1.1 1 0 0 1 1 1 1 YcaO-like family TfuA PF07812.7 gi|282163225|ref|YP_003355610.1| - 7.7e-46 154.4 0.1 8e-45 151.1 0.0 2.4 3 0 0 3 3 3 1 TfuA-like protein UPF0193 PF05250.6 gi|282163225|ref|YP_003355610.1| - 0.084 12.4 0.1 0.13 11.7 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0193) PDDEXK_3 PF13366.1 gi|282163226|ref|YP_003355611.1| - 1.2e-40 138.2 0.3 1.3e-40 138.0 0.2 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Tox-REase-7 PF15649.1 gi|282163226|ref|YP_003355611.1| - 2.3e-06 27.6 0.3 0.00016 21.6 0.0 2.1 2 0 0 2 2 2 2 Restriction endonuclease fold toxin 7 DUF1875 PF08961.5 gi|282163227|ref|YP_003355612.1| - 0.03 13.6 0.0 0.04 13.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) Lactonase PF10282.4 gi|282163228|ref|YP_003355613.1| - 2.6e-07 30.0 0.8 3.7e-05 22.9 0.1 2.8 2 2 0 2 2 2 2 Lactonase, 7-bladed beta-propeller SGL PF08450.7 gi|282163228|ref|YP_003355613.1| - 1.2e-05 24.8 0.8 1 8.7 0.0 3.5 1 1 0 3 3 3 3 SMP-30/Gluconolaconase/LRE-like region Cytochrom_D1 PF02239.11 gi|282163228|ref|YP_003355613.1| - 0.00034 19.0 0.2 0.013 13.7 0.1 2.6 2 1 0 2 2 2 1 Cytochrome D1 heme domain PD40 PF07676.7 gi|282163228|ref|YP_003355613.1| - 0.00077 19.0 3.0 29 4.4 0.0 5.2 5 0 0 5 5 5 0 WD40-like Beta Propeller Repeat Trypan_PARP PF05887.6 gi|282163228|ref|YP_003355613.1| - 0.12 12.1 8.3 0.21 11.3 5.8 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Neisseria_TspB PF05616.8 gi|282163228|ref|YP_003355613.1| - 0.48 8.7 15.3 0.73 8.1 10.6 1.2 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein DUF605 PF04652.11 gi|282163228|ref|YP_003355613.1| - 4.3 6.6 7.0 5.4 6.3 4.9 1.1 1 0 0 1 1 1 0 Vta1 like MCR_D PF02505.9 gi|282163229|ref|YP_003355614.1| - 9.2e-37 125.9 0.0 1.2e-36 125.5 0.0 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D FMN_red PF03358.10 gi|282163230|ref|YP_003355615.1| - 1.5e-08 34.2 0.0 2.6e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 NADPH-dependent FMN reductase TetR_N PF00440.18 gi|282163231|ref|YP_003355616.1| - 4.8e-17 61.3 0.4 4.8e-17 61.3 0.3 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family WHG PF13305.1 gi|282163231|ref|YP_003355616.1| - 0.0097 16.4 1.2 0.036 14.6 0.8 2.0 1 1 0 1 1 1 1 WHG domain HTH_Tnp_1_2 PF13022.1 gi|282163231|ref|YP_003355616.1| - 0.068 12.9 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Phage_NinH PF06322.6 gi|282163231|ref|YP_003355616.1| - 0.13 11.9 0.0 0.37 10.4 0.0 1.8 2 0 0 2 2 2 0 Phage NinH protein ABC_tran PF00005.22 gi|282163232|ref|YP_003355617.1| - 2.3e-29 102.4 0.0 3.8e-29 101.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163232|ref|YP_003355617.1| - 3.5e-21 76.4 0.0 1.5e-13 51.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282163232|ref|YP_003355617.1| - 6.6e-06 25.4 0.0 0.06 12.3 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|282163232|ref|YP_003355617.1| - 1.6e-05 24.2 0.0 0.12 11.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|282163232|ref|YP_003355617.1| - 0.00016 21.5 0.0 0.0039 17.0 0.0 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|282163232|ref|YP_003355617.1| - 0.00017 21.9 0.0 0.00036 20.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|282163232|ref|YP_003355617.1| - 0.0022 17.4 0.0 0.005 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|282163232|ref|YP_003355617.1| - 0.0033 17.3 0.2 0.7 9.7 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|282163232|ref|YP_003355617.1| - 0.0055 16.7 0.0 0.035 14.0 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|282163232|ref|YP_003355617.1| - 0.023 14.4 0.1 0.31 10.8 0.0 2.4 2 1 0 2 2 2 0 Part of AAA domain UPF0079 PF02367.12 gi|282163232|ref|YP_003355617.1| - 0.024 14.2 0.0 0.13 11.8 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|282163232|ref|YP_003355617.1| - 0.027 14.6 0.1 0.12 12.5 0.0 2.0 1 1 1 2 2 2 0 AAA domain DUF1348 PF07080.6 gi|282163232|ref|YP_003355617.1| - 0.032 14.0 0.0 0.059 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1348) IstB_IS21 PF01695.12 gi|282163232|ref|YP_003355617.1| - 0.041 13.3 0.1 4.6 6.6 0.0 2.7 2 1 1 3 3 3 0 IstB-like ATP binding protein AAA_13 PF13166.1 gi|282163232|ref|YP_003355617.1| - 0.048 12.1 0.0 0.6 8.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|282163232|ref|YP_003355617.1| - 0.065 13.1 0.0 0.35 10.7 0.0 2.1 1 1 1 2 2 2 0 AAA domain DUF258 PF03193.11 gi|282163232|ref|YP_003355617.1| - 0.073 12.2 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|282163232|ref|YP_003355617.1| - 0.085 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|282163232|ref|YP_003355617.1| - 0.12 13.1 0.2 0.24 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|282163232|ref|YP_003355617.1| - 0.15 12.3 0.1 1.5 8.9 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF2284 PF10050.4 gi|282163233|ref|YP_003355618.1| - 4.7e-40 136.8 0.4 5.3e-40 136.7 0.2 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) ABC2_membrane PF01061.19 gi|282163234|ref|YP_003355619.1| - 2.2e-25 89.0 20.6 2.2e-25 89.0 14.3 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|282163234|ref|YP_003355619.1| - 1.2e-14 54.0 20.9 1.2e-14 54.0 14.5 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282163234|ref|YP_003355619.1| - 4.3e-06 26.0 23.9 5.7e-06 25.6 16.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|282163235|ref|YP_003355620.1| - 3.5e-24 85.1 27.9 3.5e-24 85.1 19.4 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|282163235|ref|YP_003355620.1| - 9.9e-16 57.6 33.1 9.9e-16 57.6 23.0 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282163235|ref|YP_003355620.1| - 0.0016 17.6 34.4 0.0026 16.9 23.8 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|282163236|ref|YP_003355621.1| - 2e-27 96.1 0.0 3.5e-27 95.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Methyltransf_11 PF08241.7 gi|282163236|ref|YP_003355621.1| - 3e-24 85.3 0.0 8.4e-24 83.8 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282163236|ref|YP_003355621.1| - 8.6e-20 71.0 0.0 1.8e-19 70.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain AAA_21 PF13304.1 gi|282163236|ref|YP_003355621.1| - 1e-17 65.0 0.0 3e-16 60.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain Methyltransf_31 PF13847.1 gi|282163236|ref|YP_003355621.1| - 1.1e-17 64.0 0.0 2.3e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282163236|ref|YP_003355621.1| - 2.9e-16 59.7 0.0 1.1e-15 57.8 0.0 2.0 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282163236|ref|YP_003355621.1| - 1.3e-15 57.9 0.0 2.8e-14 53.6 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282163236|ref|YP_003355621.1| - 1.7e-14 53.5 0.0 5.2e-14 51.9 0.0 1.9 2 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|282163236|ref|YP_003355621.1| - 5.2e-13 49.2 0.0 1.1e-12 48.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|282163236|ref|YP_003355621.1| - 5.6e-12 45.4 0.0 1e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_26 PF13659.1 gi|282163236|ref|YP_003355621.1| - 1.2e-09 38.2 0.1 3.6e-09 36.6 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|282163236|ref|YP_003355621.1| - 2.3e-06 27.1 0.0 6.6e-06 25.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|282163236|ref|YP_003355621.1| - 4.8e-06 25.7 0.0 8e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase AAA_15 PF13175.1 gi|282163236|ref|YP_003355621.1| - 3.9e-05 22.8 0.0 0.038 13.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain PCMT PF01135.14 gi|282163236|ref|YP_003355621.1| - 0.0002 20.9 0.0 0.00069 19.2 0.0 1.8 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AAA_23 PF13476.1 gi|282163236|ref|YP_003355621.1| - 0.0002 21.7 0.2 0.00031 21.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|282163236|ref|YP_003355621.1| - 0.0017 17.8 0.0 0.0034 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|282163236|ref|YP_003355621.1| - 0.0032 17.4 0.0 0.088 12.7 0.0 2.6 3 0 0 3 3 3 1 AAA ATPase domain SMC_N PF02463.14 gi|282163236|ref|YP_003355621.1| - 0.0068 15.6 0.0 1.6 7.8 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DREV PF05219.7 gi|282163236|ref|YP_003355621.1| - 0.0069 15.2 0.0 0.014 14.3 0.0 1.4 1 0 0 1 1 1 1 DREV methyltransferase MoCF_biosynth PF00994.19 gi|282163236|ref|YP_003355621.1| - 0.0078 15.6 0.0 0.026 13.9 0.0 1.8 1 1 0 1 1 1 1 Probable molybdopterin binding domain SbcCD_C PF13558.1 gi|282163236|ref|YP_003355621.1| - 0.0082 16.0 0.0 0.041 13.8 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MetW PF07021.7 gi|282163236|ref|YP_003355621.1| - 0.011 15.1 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|282163236|ref|YP_003355621.1| - 0.012 14.3 0.0 0.019 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) AAA_19 PF13245.1 gi|282163236|ref|YP_003355621.1| - 0.025 14.3 0.9 1.6 8.5 0.2 3.0 3 0 0 3 3 2 0 Part of AAA domain CheR PF01739.13 gi|282163236|ref|YP_003355621.1| - 0.066 12.4 0.0 0.34 10.1 0.0 2.0 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_29 PF03141.11 gi|282163236|ref|YP_003355621.1| - 0.074 11.3 0.0 0.098 10.9 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase UPF0079 PF02367.12 gi|282163236|ref|YP_003355621.1| - 0.092 12.3 0.9 0.43 10.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 tRNA_U5-meth_tr PF05958.6 gi|282163236|ref|YP_003355621.1| - 0.092 11.4 0.1 0.29 9.7 0.0 1.8 2 1 1 3 3 3 0 tRNA (Uracil-5-)-methyltransferase DUF3321 PF11968.3 gi|282163236|ref|YP_003355621.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase (DUF3321) AAA_25 PF13481.1 gi|282163236|ref|YP_003355621.1| - 0.12 11.7 0.1 3.7 6.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|282163236|ref|YP_003355621.1| - 0.13 10.7 0.0 2.7 6.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain Methyltransf_8 PF05148.10 gi|282163236|ref|YP_003355621.1| - 0.14 11.7 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_32 PF13679.1 gi|282163236|ref|YP_003355621.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain ABC_tran PF00005.22 gi|282163237|ref|YP_003355622.1| - 1.7e-28 99.6 0.0 2.8e-28 98.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Methyltransf_11 PF08241.7 gi|282163237|ref|YP_003355622.1| - 3.6e-20 72.2 0.0 1.3e-19 70.4 0.0 2.0 2 0 0 2 2 1 1 Methyltransferase domain AAA_21 PF13304.1 gi|282163237|ref|YP_003355622.1| - 3.9e-18 66.4 0.1 7.5e-11 42.5 0.0 2.3 1 1 0 2 2 2 2 AAA domain Methyltransf_23 PF13489.1 gi|282163237|ref|YP_003355622.1| - 1.8e-14 53.7 0.0 6.3e-14 51.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282163237|ref|YP_003355622.1| - 4.1e-14 53.0 0.1 1.2e-11 45.2 0.0 2.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163237|ref|YP_003355622.1| - 6.1e-14 51.8 0.0 2.1e-13 50.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282163237|ref|YP_003355622.1| - 6.9e-13 48.9 0.0 2.1e-12 47.3 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282163237|ref|YP_003355622.1| - 4e-11 42.4 0.0 7.8e-11 41.5 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|282163237|ref|YP_003355622.1| - 2.2e-09 37.5 0.1 6.1e-09 36.1 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282163237|ref|YP_003355622.1| - 1e-07 31.9 0.1 4.1e-07 30.0 0.1 2.0 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|282163237|ref|YP_003355622.1| - 7.4e-06 25.4 0.0 1.9e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|282163237|ref|YP_003355622.1| - 1e-05 25.0 0.0 1.6e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) AAA_15 PF13175.1 gi|282163237|ref|YP_003355622.1| - 3.9e-05 22.8 0.0 0.015 14.3 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain RrnaAD PF00398.15 gi|282163237|ref|YP_003355622.1| - 0.0001 21.4 0.0 0.00018 20.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|282163237|ref|YP_003355622.1| - 0.00021 20.7 0.0 0.00037 19.9 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|282163237|ref|YP_003355622.1| - 0.00026 20.6 0.0 0.00093 18.8 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase AAA_23 PF13476.1 gi|282163237|ref|YP_003355622.1| - 0.00051 20.4 0.1 0.0011 19.3 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|282163237|ref|YP_003355622.1| - 0.0017 17.8 0.0 0.0033 16.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|282163237|ref|YP_003355622.1| - 0.002 17.3 0.0 1.1 8.3 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|282163237|ref|YP_003355622.1| - 0.0043 17.0 0.3 0.097 12.6 0.1 2.3 2 0 0 2 2 2 1 AAA ATPase domain Methyltransf_9 PF08003.6 gi|282163237|ref|YP_003355622.1| - 0.0062 15.2 0.0 0.01 14.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) SbcCD_C PF13558.1 gi|282163237|ref|YP_003355622.1| - 0.008 16.0 0.0 0.041 13.8 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Methyltransf_24 PF13578.1 gi|282163237|ref|YP_003355622.1| - 0.012 16.3 0.0 0.14 13.0 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain AAA_10 PF12846.2 gi|282163237|ref|YP_003355622.1| - 0.015 14.7 0.2 0.35 10.2 0.1 2.4 1 1 0 1 1 1 0 AAA-like domain UPF0079 PF02367.12 gi|282163237|ref|YP_003355622.1| - 0.015 14.9 0.2 0.17 11.5 0.0 2.6 3 0 0 3 3 2 0 Uncharacterised P-loop hydrolase UPF0079 Methyltransf_32 PF13679.1 gi|282163237|ref|YP_003355622.1| - 0.034 13.8 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain AAA_33 PF13671.1 gi|282163237|ref|YP_003355622.1| - 0.037 13.8 0.0 0.33 10.8 0.0 2.4 1 1 0 1 1 1 0 AAA domain Methyltransf_29 PF03141.11 gi|282163237|ref|YP_003355622.1| - 0.044 12.1 0.0 0.064 11.5 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase tRNA_U5-meth_tr PF05958.6 gi|282163237|ref|YP_003355622.1| - 0.046 12.4 0.0 0.26 9.9 0.0 2.1 2 1 1 3 3 3 0 tRNA (Uracil-5-)-methyltransferase AAA_13 PF13166.1 gi|282163237|ref|YP_003355622.1| - 0.052 12.0 0.0 2.4 6.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain DREV PF05219.7 gi|282163237|ref|YP_003355622.1| - 0.064 12.1 0.0 0.17 10.7 0.0 1.7 2 0 0 2 2 2 0 DREV methyltransferase CheR PF01739.13 gi|282163237|ref|YP_003355622.1| - 0.069 12.4 0.2 0.78 8.9 0.0 2.6 3 1 1 4 4 2 0 CheR methyltransferase, SAM binding domain PCMT PF01135.14 gi|282163237|ref|YP_003355622.1| - 0.087 12.3 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AAA_25 PF13481.1 gi|282163237|ref|YP_003355622.1| - 0.11 11.8 0.2 1.4 8.3 0.1 2.3 1 1 0 1 1 1 0 AAA domain HAD_2 PF13419.1 gi|282163237|ref|YP_003355622.1| - 0.12 12.6 0.1 0.44 10.7 0.0 2.0 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HTH_5 PF01022.15 gi|282163238|ref|YP_003355623.1| - 6.2e-13 48.1 0.0 9.9e-13 47.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|282163238|ref|YP_003355623.1| - 2.8e-08 33.4 0.0 3.9e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain zinc_ribbon_5 PF13719.1 gi|282163238|ref|YP_003355623.1| - 0.0012 18.3 0.1 0.0022 17.5 0.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain HTH_27 PF13463.1 gi|282163238|ref|YP_003355623.1| - 0.004 17.4 0.0 0.0061 16.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|282163238|ref|YP_003355623.1| - 0.0043 16.8 0.0 0.0061 16.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix zinc_ribbon_4 PF13717.1 gi|282163238|ref|YP_003355623.1| - 0.0072 15.9 0.2 0.014 15.0 0.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DUF2513 PF10711.4 gi|282163238|ref|YP_003355623.1| - 0.0088 16.1 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) Zn-ribbon_8 PF09723.5 gi|282163238|ref|YP_003355623.1| - 0.013 15.4 0.3 0.027 14.3 0.2 1.6 1 0 0 1 1 1 0 Zinc ribbon domain COMP PF11598.3 gi|282163238|ref|YP_003355623.1| - 0.031 14.3 0.6 0.031 14.3 0.4 1.9 2 0 0 2 2 1 0 Cartilage oligomeric matrix protein HTH_24 PF13412.1 gi|282163238|ref|YP_003355623.1| - 0.049 13.0 0.0 0.077 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HxlR PF01638.12 gi|282163238|ref|YP_003355623.1| - 0.06 12.9 0.0 0.083 12.5 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DZR PF12773.2 gi|282163238|ref|YP_003355623.1| - 0.068 12.9 0.5 0.14 11.9 0.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon HTH_34 PF13601.1 gi|282163238|ref|YP_003355623.1| - 0.072 13.1 0.0 0.14 12.2 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|282163238|ref|YP_003355623.1| - 0.081 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain PaaX PF07848.7 gi|282163238|ref|YP_003355623.1| - 0.12 12.3 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein Elf1 PF05129.8 gi|282163238|ref|YP_003355623.1| - 0.14 11.8 1.3 0.7 9.6 0.0 2.2 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.2 gi|282163238|ref|YP_003355623.1| - 0.36 10.6 2.1 0.65 9.8 0.3 2.2 2 1 0 2 2 2 0 Transposase zinc-ribbon domain RecR PF02132.10 gi|282163238|ref|YP_003355623.1| - 0.46 9.9 2.1 11 5.5 0.9 2.9 2 1 0 2 2 2 0 RecR protein Peptidase_M48 PF01435.13 gi|282163240|ref|YP_003355625.1| - 2.5e-38 131.8 0.0 3.3e-38 131.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|282163240|ref|YP_003355625.1| - 1.2e-05 24.4 0.0 1.8e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 YndJ PF14158.1 gi|282163240|ref|YP_003355625.1| - 0.0067 15.5 0.6 0.013 14.5 0.4 1.5 1 0 0 1 1 1 1 YndJ-like protein UPF0104 PF03706.8 gi|282163240|ref|YP_003355625.1| - 0.073 12.3 7.4 0.41 9.8 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0104) SprT-like PF10263.4 gi|282163240|ref|YP_003355625.1| - 0.15 11.6 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF1129 PF06570.6 gi|282163240|ref|YP_003355625.1| - 0.25 10.6 4.0 2.1 7.5 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF1469 PF07332.6 gi|282163240|ref|YP_003355625.1| - 0.29 10.8 8.2 0.44 10.2 1.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF2207 PF09972.4 gi|282163240|ref|YP_003355625.1| - 1.8 7.0 5.5 0.63 8.5 0.1 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Na_Ca_ex PF01699.19 gi|282163241|ref|YP_003355626.1| - 1.1e-39 135.1 36.5 5.1e-21 74.7 11.8 2.3 2 0 0 2 2 2 2 Sodium/calcium exchanger protein PT PF04886.7 gi|282163242|ref|YP_003355627.1| - 3.1e-08 32.7 29.8 2.1e-06 26.9 11.8 5.5 4 2 1 5 5 5 2 PT repeat PRA-CH PF01502.13 gi|282163243|ref|YP_003355628.1| - 1.5e-37 127.0 1.0 1.9e-37 126.6 0.7 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase BBS2_Mid PF14783.1 gi|282163243|ref|YP_003355628.1| - 0.12 12.1 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, middle region T2SE PF00437.15 gi|282163244|ref|YP_003355629.1| - 3.7e-15 55.5 0.1 6.3e-15 54.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|282163244|ref|YP_003355629.1| - 2.2e-09 36.8 0.5 6.3e-09 35.3 0.3 1.8 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|282163244|ref|YP_003355629.1| - 1.8e-06 27.4 0.1 4.8e-06 26.0 0.1 1.8 1 0 0 1 1 1 1 KH domain PIN_4 PF13638.1 gi|282163244|ref|YP_003355629.1| - 2.2e-05 24.5 0.0 0.00038 20.5 0.0 2.4 2 0 0 2 2 2 1 PIN domain AAA_17 PF13207.1 gi|282163244|ref|YP_003355629.1| - 0.00014 22.6 0.0 0.00044 21.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|282163244|ref|YP_003355629.1| - 0.0011 18.4 0.0 0.0031 17.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|282163244|ref|YP_003355629.1| - 0.0016 18.4 0.0 0.003 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain KH_2 PF07650.12 gi|282163244|ref|YP_003355629.1| - 0.002 17.6 1.9 0.0055 16.2 1.3 1.8 1 0 0 1 1 1 1 KH domain IstB_IS21 PF01695.12 gi|282163244|ref|YP_003355629.1| - 0.0065 15.9 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|282163244|ref|YP_003355629.1| - 0.0067 16.1 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|282163244|ref|YP_003355629.1| - 0.0089 16.1 0.0 0.025 14.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|282163244|ref|YP_003355629.1| - 0.0098 16.2 0.0 0.033 14.4 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|282163244|ref|YP_003355629.1| - 0.011 15.6 0.0 0.027 14.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|282163244|ref|YP_003355629.1| - 0.012 15.4 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|282163244|ref|YP_003355629.1| - 0.014 14.5 0.0 0.028 13.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.1 gi|282163244|ref|YP_003355629.1| - 0.031 13.8 0.0 0.29 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|282163244|ref|YP_003355629.1| - 0.05 13.9 0.0 0.14 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|282163244|ref|YP_003355629.1| - 0.05 13.7 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|282163244|ref|YP_003355629.1| - 0.059 12.7 0.0 0.16 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|282163244|ref|YP_003355629.1| - 0.09 12.9 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|282163244|ref|YP_003355629.1| - 0.11 12.2 0.0 0.34 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Glyco_trans_1_4 PF13692.1 gi|282163245|ref|YP_003355630.1| - 0.0093 16.1 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF378 PF04070.7 gi|282163246|ref|YP_003355631.1| - 4.1e-15 55.1 9.4 5e-15 54.8 6.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF378) DUF4383 PF14325.1 gi|282163246|ref|YP_003355631.1| - 0.69 9.9 6.5 0.97 9.4 4.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4383) DUF1469 PF07332.6 gi|282163246|ref|YP_003355631.1| - 4.5 7.0 7.2 5.4 6.7 5.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF3329 PF11808.3 gi|282163246|ref|YP_003355631.1| - 9.4 6.3 6.3 19 5.4 4.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3329) YlaC PF10777.4 gi|282163247|ref|YP_003355632.1| - 0.038 13.5 0.1 0.038 13.5 0.1 1.1 1 0 0 1 1 1 0 Inner membrane protein YlaC PAS_3 PF08447.6 gi|282163248|ref|YP_003355633.1| - 1.4e-32 111.6 0.6 2.7e-16 59.4 0.1 2.8 3 0 0 3 3 2 2 PAS fold PAS_9 PF13426.1 gi|282163248|ref|YP_003355633.1| - 3.5e-24 85.1 0.2 2.1e-13 50.5 0.0 3.1 4 0 0 4 4 4 2 PAS domain HATPase_c PF02518.21 gi|282163248|ref|YP_003355633.1| - 6.8e-17 61.1 0.0 6.6e-16 58.0 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|282163248|ref|YP_003355633.1| - 5.7e-15 55.0 0.1 9.4e-10 38.2 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|282163248|ref|YP_003355633.1| - 5.7e-11 42.4 0.0 2.8e-08 33.7 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|282163248|ref|YP_003355633.1| - 1.1e-09 37.8 0.0 4.2e-07 29.5 0.0 3.0 3 0 0 3 3 3 1 PAS domain GAF_3 PF13492.1 gi|282163248|ref|YP_003355633.1| - 1.3e-09 38.2 0.0 3.1e-09 37.0 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|282163248|ref|YP_003355633.1| - 6.6e-09 36.0 0.0 7.3e-08 32.6 0.0 2.4 1 1 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|282163248|ref|YP_003355633.1| - 5.2e-05 23.7 0.0 0.00013 22.4 0.0 1.8 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|282163248|ref|YP_003355633.1| - 0.00012 21.7 0.0 0.00062 19.4 0.0 2.1 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.1 gi|282163248|ref|YP_003355633.1| - 0.022 14.5 0.0 0.15 11.8 0.0 2.2 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|282163248|ref|YP_003355633.1| - 0.026 14.5 0.1 0.22 11.5 0.0 2.7 2 0 0 2 2 2 0 PAS fold PAS_11 PF14598.1 gi|282163248|ref|YP_003355633.1| - 0.075 12.9 0.0 3.6 7.5 0.0 2.4 2 0 0 2 2 2 0 PAS domain Abhydrolase_3 PF07859.8 gi|282163249|ref|YP_003355634.1| - 4.6e-66 222.4 0.1 6.5e-66 221.9 0.1 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF2424 PF10340.4 gi|282163249|ref|YP_003355634.1| - 6e-06 25.1 0.0 8.5e-06 24.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) Peptidase_S9 PF00326.16 gi|282163249|ref|YP_003355634.1| - 8.6e-05 21.8 0.1 0.00019 20.7 0.1 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|282163249|ref|YP_003355634.1| - 0.00012 21.8 0.0 0.00021 21.0 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|282163249|ref|YP_003355634.1| - 0.0019 16.7 0.1 1.2 7.5 0.0 2.2 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) COesterase PF00135.23 gi|282163249|ref|YP_003355634.1| - 0.019 13.6 0.9 0.41 9.2 0.2 2.0 2 0 0 2 2 2 0 Carboxylesterase family PAF-AH_p_II PF03403.8 gi|282163249|ref|YP_003355634.1| - 0.11 10.7 0.1 0.33 9.2 0.0 1.7 1 1 1 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II CxxCxxCC PF03692.10 gi|282163250|ref|YP_003355635.1| - 5.4e-11 42.8 5.7 9.8e-11 41.9 3.9 1.5 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Ku PF02735.11 gi|282163251|ref|YP_003355636.1| - 2.8e-29 101.9 0.0 3.9e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 Ku70/Ku80 beta-barrel domain ASL_C PF08328.6 gi|282163251|ref|YP_003355636.1| - 0.091 12.6 0.4 0.32 10.8 0.2 1.9 2 0 0 2 2 2 0 Adenylosuccinate lyase C-terminal GRP PF07172.6 gi|282163253|ref|YP_003355638.1| - 0.64 10.5 26.8 0.77 10.2 11.2 3.1 3 0 0 3 3 3 0 Glycine rich protein family RHH_1 PF01402.16 gi|282163254|ref|YP_003355639.1| - 4.3e-08 32.7 0.1 1.1e-07 31.3 0.0 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|282163254|ref|YP_003355639.1| - 0.011 15.4 0.1 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix domain Ammonium_transp PF00909.16 gi|282163255|ref|YP_003355640.1| - 1.7e-125 418.6 39.1 1.9e-125 418.4 27.1 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|282163256|ref|YP_003355641.1| - 2e-35 121.2 5.6 2.3e-35 121.1 3.9 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|282163256|ref|YP_003355641.1| - 0.00091 19.1 1.3 0.022 14.7 0.9 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF970) Ammonium_transp PF00909.16 gi|282163257|ref|YP_003355642.1| - 1.7e-126 421.8 41.5 2e-126 421.7 28.8 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|282163258|ref|YP_003355643.1| - 2.1e-34 118.0 3.4 2.4e-34 117.8 2.4 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|282163258|ref|YP_003355643.1| - 0.0049 16.8 1.3 0.36 10.8 0.0 2.9 1 1 1 3 3 3 1 Protein of unknown function (DUF970) Nit_Regul_Hom PF10126.4 gi|282163258|ref|YP_003355643.1| - 0.06 13.1 0.3 1 9.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII Abi PF02517.11 gi|282163259|ref|YP_003355644.1| - 2.2e-08 34.0 9.1 2.2e-08 34.0 6.3 3.2 2 1 0 2 2 2 1 CAAX protease self-immunity Saccharop_dh_N PF04455.7 gi|282163260|ref|YP_003355645.1| - 1.4e-39 134.3 0.0 2.8e-39 133.3 0.0 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.17 gi|282163260|ref|YP_003355645.1| - 0.0004 20.1 0.6 0.02 14.6 0.0 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain AA_kinase PF00696.23 gi|282163260|ref|YP_003355645.1| - 0.00049 19.7 0.1 0.00085 18.9 0.1 1.3 1 0 0 1 1 1 1 Amino acid kinase family UDPG_MGDP_dh_N PF03721.9 gi|282163260|ref|YP_003355645.1| - 0.053 12.8 0.7 7.9 5.8 0.0 3.0 4 0 0 4 4 4 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Methyltransf_31 PF13847.1 gi|282163261|ref|YP_003355646.1| - 1.4e-19 70.1 0.0 1.6e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282163261|ref|YP_003355646.1| - 3.8e-18 65.7 0.1 5.1e-18 65.3 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|282163261|ref|YP_003355646.1| - 3.9e-17 62.4 0.0 7.2e-17 61.5 0.0 1.3 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_18 PF12847.2 gi|282163261|ref|YP_003355646.1| - 4.1e-17 62.7 0.1 5.9e-17 62.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282163261|ref|YP_003355646.1| - 5e-17 62.1 0.1 6.5e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282163261|ref|YP_003355646.1| - 1.3e-15 57.5 0.2 2e-15 56.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282163261|ref|YP_003355646.1| - 4.4e-14 52.5 0.0 5.7e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282163261|ref|YP_003355646.1| - 1.8e-12 47.3 0.0 3e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|282163261|ref|YP_003355646.1| - 6.1e-11 41.9 0.0 7.9e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|282163261|ref|YP_003355646.1| - 1.8e-10 40.3 0.0 2.3e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.13 gi|282163261|ref|YP_003355646.1| - 5.5e-08 32.2 0.1 7.8e-08 31.7 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|282163261|ref|YP_003355646.1| - 2.1e-07 30.3 0.0 2.4e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|282163261|ref|YP_003355646.1| - 1e-06 28.4 0.1 1.5e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase NodS PF05401.6 gi|282163261|ref|YP_003355646.1| - 1.3e-05 24.6 0.0 1.6e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) PrmA PF06325.8 gi|282163261|ref|YP_003355646.1| - 0.0027 16.9 0.0 0.0032 16.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0146 PF03686.8 gi|282163261|ref|YP_003355646.1| - 0.012 15.4 0.1 0.017 14.9 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Methyltransf_32 PF13679.1 gi|282163261|ref|YP_003355646.1| - 0.015 14.9 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_9 PF08003.6 gi|282163261|ref|YP_003355646.1| - 0.018 13.7 0.0 0.023 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) MetW PF07021.7 gi|282163261|ref|YP_003355646.1| - 0.018 14.4 0.1 0.023 14.0 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW FmrO PF07091.6 gi|282163261|ref|YP_003355646.1| - 0.023 13.6 0.0 0.03 13.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) DOT1 PF08123.8 gi|282163261|ref|YP_003355646.1| - 0.042 13.1 0.0 0.056 12.7 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Mur_ligase PF01225.20 gi|282163261|ref|YP_003355646.1| - 0.067 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Mur ligase family, catalytic domain FtsJ PF01728.14 gi|282163261|ref|YP_003355646.1| - 0.08 12.9 0.2 1.3 8.9 0.1 2.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase PCMT PF01135.14 gi|282163261|ref|YP_003355646.1| - 0.087 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF938 PF06080.7 gi|282163261|ref|YP_003355646.1| - 0.11 11.9 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_4 PF02390.12 gi|282163261|ref|YP_003355646.1| - 0.12 11.3 0.0 0.37 9.8 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase UPF0020 PF01170.13 gi|282163261|ref|YP_003355646.1| - 0.16 11.5 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 CDP-OH_P_transf PF01066.16 gi|282163262|ref|YP_003355647.1| - 5.7e-18 65.0 8.2 1.2e-17 63.9 5.7 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Borrelia_P13 PF05628.7 gi|282163262|ref|YP_003355647.1| - 0.084 12.6 0.8 0.17 11.6 0.1 1.8 2 0 0 2 2 2 0 Borrelia membrane protein P13 PEMT PF04191.8 gi|282163263|ref|YP_003355648.1| - 3.8e-07 30.1 2.4 3.8e-07 30.1 1.7 1.9 2 1 0 2 2 2 1 Phospholipid methyltransferase ICMT PF04140.9 gi|282163263|ref|YP_003355648.1| - 0.0033 17.5 2.4 0.0071 16.5 0.1 2.3 1 1 2 3 3 3 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF4526 PF15029.1 gi|282163263|ref|YP_003355648.1| - 0.074 12.6 0.6 0.11 12.0 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4526) Flavodoxin_5 PF12724.2 gi|282163264|ref|YP_003355649.1| - 8.7e-06 25.7 0.0 1e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|282163264|ref|YP_003355649.1| - 0.0017 17.7 0.0 0.024 13.9 0.0 2.0 1 1 1 2 2 2 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|282163264|ref|YP_003355649.1| - 0.0018 17.7 0.0 0.0024 17.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Torsin PF06309.6 gi|282163264|ref|YP_003355649.1| - 0.046 13.5 0.0 0.97 9.3 0.0 2.1 1 1 1 2 2 2 0 Torsin TetR_N PF00440.18 gi|282163265|ref|YP_003355650.1| - 7.4e-16 57.5 0.3 1.1e-15 56.9 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_23 PF13384.1 gi|282163265|ref|YP_003355650.1| - 0.064 12.9 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|282163265|ref|YP_003355650.1| - 0.1 12.0 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Radical_SAM PF04055.16 gi|282163266|ref|YP_003355651.1| - 3.4e-11 43.5 0.1 2e-10 41.0 0.1 2.1 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|282163266|ref|YP_003355651.1| - 1.4e-08 34.8 0.0 5.1e-08 32.9 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|282163266|ref|YP_003355651.1| - 6.3e-07 29.5 0.0 2.2e-06 27.8 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|282163266|ref|YP_003355651.1| - 0.025 14.8 0.0 0.064 13.6 0.0 1.7 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain TetR_N PF00440.18 gi|282163267|ref|YP_003355652.1| - 4.3e-18 64.6 0.3 8.8e-18 63.6 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_20 PF12840.2 gi|282163267|ref|YP_003355652.1| - 0.048 13.4 0.0 3.6 7.4 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|282163267|ref|YP_003355652.1| - 0.054 13.5 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF4468 PF14730.1 gi|282163268|ref|YP_003355653.1| - 0.083 12.5 0.1 1.2 8.8 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4468) with TBP-like fold EF-hand_7 PF13499.1 gi|282163268|ref|YP_003355653.1| - 0.11 12.6 0.1 0.16 12.1 0.1 1.2 1 0 0 1 1 1 0 EF-hand domain pair FMN_red PF03358.10 gi|282163270|ref|YP_003355655.1| - 3.5e-25 88.2 0.0 5e-25 87.7 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|282163270|ref|YP_003355655.1| - 5.9e-11 42.2 0.0 6.9e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold KGG PF10685.4 gi|282163271|ref|YP_003355656.1| - 2.9e-08 33.4 10.5 0.0014 18.5 1.1 3.8 2 1 1 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282163271|ref|YP_003355656.1| - 4e-05 23.8 13.7 5.5e-05 23.3 9.5 1.3 1 0 0 1 1 1 1 Small hydrophilic plant seed protein TUSC2 PF15000.1 gi|282163271|ref|YP_003355656.1| - 0.13 12.2 3.8 4.5 7.3 2.6 2.5 1 1 0 1 1 1 0 Tumour suppressor candidate 2 SASP PF00269.15 gi|282163271|ref|YP_003355656.1| - 0.51 10.2 7.8 2.1 8.2 0.4 2.4 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type KMP11 PF03037.11 gi|282163271|ref|YP_003355656.1| - 4.2 8.0 6.9 14 6.3 0.6 2.1 1 1 1 2 2 2 0 Kinetoplastid membrane protein 11 PAS_3 PF08447.6 gi|282163272|ref|YP_003355657.1| - 6.6e-21 74.2 2.5 6.6e-12 45.3 0.2 2.7 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|282163272|ref|YP_003355657.1| - 5.4e-15 55.0 0.0 1.2e-14 53.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|282163272|ref|YP_003355657.1| - 2.9e-10 40.4 0.1 6.4e-07 29.7 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|282163272|ref|YP_003355657.1| - 1.2e-05 25.0 0.0 0.0021 17.8 0.0 2.6 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|282163272|ref|YP_003355657.1| - 1.9e-05 24.3 0.0 0.00031 20.4 0.0 2.7 3 0 0 3 3 3 1 PAS domain PAS_4 PF08448.5 gi|282163272|ref|YP_003355657.1| - 2.5e-05 24.2 0.0 0.01 15.8 0.0 2.8 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|282163272|ref|YP_003355657.1| - 0.00013 21.7 0.0 0.0004 20.1 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|282163272|ref|YP_003355657.1| - 0.025 14.2 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|282163272|ref|YP_003355657.1| - 0.061 13.0 0.0 1.6 8.4 0.0 2.4 2 0 0 2 2 2 0 GHKL domain HisKA PF00512.20 gi|282163272|ref|YP_003355657.1| - 0.2 11.6 1.5 0.28 11.1 0.0 2.1 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain PhoU_div PF01865.11 gi|282163273|ref|YP_003355658.1| - 9.6e-43 145.8 7.1 1.1e-42 145.6 4.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 eIF3_N PF09440.5 gi|282163273|ref|YP_003355658.1| - 0.043 13.9 7.7 0.32 11.1 0.4 2.2 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain PhoU PF01895.14 gi|282163273|ref|YP_003355658.1| - 0.085 13.3 4.5 1.2 9.5 1.2 2.6 2 1 0 2 2 2 0 PhoU domain DUF632 PF04782.7 gi|282163273|ref|YP_003355658.1| - 0.19 10.7 5.4 0.077 12.0 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF632) Sod_Ni PF09055.6 gi|282163273|ref|YP_003355658.1| - 1.7 9.0 4.8 0.7 10.2 1.1 2.1 2 1 0 2 2 2 0 Nickel-containing superoxide dismutase ANTAR PF03861.9 gi|282163274|ref|YP_003355659.1| - 0.098 12.2 0.1 0.12 12.0 0.1 1.1 1 0 0 1 1 1 0 ANTAR domain eIF-1a PF01176.14 gi|282163275|ref|YP_003355660.1| - 1.7e-22 78.5 5.5 2e-22 78.3 3.8 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF46 PF01864.12 gi|282163277|ref|YP_003355662.1| - 1.2e-44 152.2 4.6 1.3e-44 152.1 3.2 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|282163277|ref|YP_003355662.1| - 7.9e-05 22.4 2.9 7.9e-05 22.4 2.0 2.1 1 1 1 2 2 2 1 Cytidylyltransferase family CDP-OH_P_transf PF01066.16 gi|282163279|ref|YP_003355664.1| - 8.4e-15 54.9 15.9 4.3e-14 52.6 11.1 1.9 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Macoilin PF09726.4 gi|282163279|ref|YP_003355664.1| - 0.077 11.2 1.2 0.11 10.7 0.8 1.1 1 0 0 1 1 1 0 Transmembrane protein DUF3094 PF11293.3 gi|282163279|ref|YP_003355664.1| - 0.2 11.1 1.4 7 6.2 0.1 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3094) DUF3084 PF11283.3 gi|282163279|ref|YP_003355664.1| - 0.22 11.3 2.1 0.66 9.8 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3084) PsbJ PF01788.12 gi|282163279|ref|YP_003355664.1| - 0.24 10.9 5.1 0.34 10.4 0.4 2.7 2 0 0 2 2 2 0 PsbJ YfhO PF09586.5 gi|282163279|ref|YP_003355664.1| - 1.5 6.7 8.0 20 3.0 5.5 1.9 1 1 0 1 1 1 0 Bacterial membrane protein YfhO Inhibitor_I42 PF09394.5 gi|282163280|ref|YP_003355665.1| - 2.4e-30 104.7 0.8 3.3e-30 104.2 0.6 1.2 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 Inhibitor_I71 PF12628.2 gi|282163280|ref|YP_003355665.1| - 0.00014 21.5 0.1 0.058 13.0 0.0 2.1 1 1 1 2 2 2 2 Falstatin, cysteine peptidase inhibitor Peptidase_MA_2 PF13485.1 gi|282163281|ref|YP_003355666.1| - 9.8e-10 38.5 0.0 1.5e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase MA superfamily HTH_24 PF13412.1 gi|282163282|ref|YP_003355667.1| - 1.4e-15 56.3 0.0 2.3e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|282163282|ref|YP_003355667.1| - 8.5e-13 47.6 0.0 1.3e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|282163282|ref|YP_003355667.1| - 0.00011 21.8 0.2 0.00039 20.0 0.0 1.8 2 0 0 2 2 2 1 AsnC family HTH_11 PF08279.7 gi|282163282|ref|YP_003355667.1| - 0.00032 20.2 0.0 0.00056 19.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|282163282|ref|YP_003355667.1| - 0.00091 18.8 0.0 0.0017 18.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|282163282|ref|YP_003355667.1| - 0.0018 17.8 0.0 0.0044 16.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.11 gi|282163282|ref|YP_003355667.1| - 0.0019 17.4 0.0 0.0032 16.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.15 gi|282163282|ref|YP_003355667.1| - 0.0043 17.1 0.1 0.0069 16.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|282163282|ref|YP_003355667.1| - 0.0049 16.6 0.0 0.0077 16.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|282163282|ref|YP_003355667.1| - 0.0066 16.1 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|282163282|ref|YP_003355667.1| - 0.02 14.3 0.0 0.053 12.9 0.0 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 DUF2083 PF09856.4 gi|282163282|ref|YP_003355667.1| - 0.022 14.4 0.1 0.032 13.8 0.1 1.3 1 0 0 1 1 1 0 Predicted transcriptional regulator (DUF2083) Fe_dep_repress PF01325.14 gi|282163282|ref|YP_003355667.1| - 0.023 14.6 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|282163282|ref|YP_003355667.1| - 0.026 14.3 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|282163282|ref|YP_003355667.1| - 0.041 13.4 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|282163282|ref|YP_003355667.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.1 gi|282163282|ref|YP_003355667.1| - 0.13 11.5 0.0 0.32 10.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_34 PF13601.1 gi|282163282|ref|YP_003355667.1| - 0.14 12.2 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_39 PF14090.1 gi|282163282|ref|YP_003355667.1| - 0.15 11.5 0.0 0.29 10.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DNA_ligase_A_M PF01068.16 gi|282163283|ref|YP_003355668.1| - 2.2e-52 177.3 0.0 4e-52 176.5 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|282163283|ref|YP_003355668.1| - 2.2e-44 151.3 0.3 2e-42 144.9 0.1 2.8 2 1 1 3 3 3 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|282163283|ref|YP_003355668.1| - 2.1e-18 66.4 0.0 4.4e-18 65.4 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|282163283|ref|YP_003355668.1| - 2.7e-05 23.7 0.0 5.4e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 DNA ligase OB-like domain Arginosuc_synth PF00764.14 gi|282163283|ref|YP_003355668.1| - 0.018 14.0 0.0 0.035 13.1 0.0 1.4 1 0 0 1 1 1 0 Arginosuccinate synthase SelR PF01641.13 gi|282163284|ref|YP_003355669.1| - 1.9e-53 179.3 0.0 2.4e-53 179.0 0.0 1.1 1 0 0 1 1 1 1 SelR domain TPR_12 PF13424.1 gi|282163285|ref|YP_003355670.1| - 1.2e-09 37.9 0.1 3.9e-09 36.3 0.0 1.9 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282163285|ref|YP_003355670.1| - 8.9e-08 31.4 0.4 0.00017 21.2 0.0 3.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|282163285|ref|YP_003355670.1| - 2.8e-07 30.0 0.3 8.3e-07 28.5 0.2 1.9 1 0 0 1 1 1 1 TPR repeat TPR_1 PF00515.23 gi|282163285|ref|YP_003355670.1| - 2.1e-05 23.9 0.1 0.00011 21.6 0.1 2.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282163285|ref|YP_003355670.1| - 5.4e-05 22.9 0.0 0.00078 19.2 0.0 3.0 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282163285|ref|YP_003355670.1| - 0.0014 18.2 0.0 0.0068 16.1 0.0 2.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282163285|ref|YP_003355670.1| - 0.0026 17.4 0.3 0.024 14.4 0.0 2.7 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282163285|ref|YP_003355670.1| - 0.0067 16.7 0.3 0.024 14.9 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282163285|ref|YP_003355670.1| - 0.045 14.4 1.3 0.16 12.6 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat PPR PF01535.15 gi|282163285|ref|YP_003355670.1| - 0.077 13.0 0.6 5.5 7.2 0.0 3.5 3 0 0 3 3 3 0 PPR repeat Usp PF00582.21 gi|282163286|ref|YP_003355671.1| - 6.7e-40 136.5 0.5 2.1e-18 66.8 0.0 2.8 2 1 0 2 2 2 2 Universal stress protein family PBP_dimer PF03717.10 gi|282163286|ref|YP_003355671.1| - 0.13 12.3 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Penicillin-binding Protein dimerisation domain Fer4_9 PF13187.1 gi|282163287|ref|YP_003355672.1| - 4.9e-20 71.5 50.9 3.6e-10 39.9 8.8 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282163287|ref|YP_003355672.1| - 7.3e-20 69.6 31.1 3.7e-09 35.7 0.9 5.2 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282163287|ref|YP_003355672.1| - 1.2e-19 70.3 38.3 1.7e-13 50.6 6.2 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282163287|ref|YP_003355672.1| - 4e-19 68.1 54.8 6.9e-09 35.3 9.6 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282163287|ref|YP_003355672.1| - 1.2e-15 56.5 37.6 5.1e-07 29.2 0.8 4.7 4 1 1 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282163287|ref|YP_003355672.1| - 8.6e-14 50.5 27.9 6.1e-06 25.8 1.8 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282163287|ref|YP_003355672.1| - 1.5e-13 50.3 33.1 4.3e-08 32.8 6.5 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282163287|ref|YP_003355672.1| - 1.2e-12 47.6 28.8 6.9e-10 38.7 5.8 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|282163287|ref|YP_003355672.1| - 4.3e-10 39.3 10.2 4.3e-10 39.3 7.1 2.1 1 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282163287|ref|YP_003355672.1| - 1.8e-09 38.2 27.2 9.7e-05 23.0 0.3 4.2 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|282163287|ref|YP_003355672.1| - 1.2e-08 34.8 43.4 0.0029 18.0 4.0 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|282163287|ref|YP_003355672.1| - 1.8e-08 34.0 36.8 0.00028 20.9 1.9 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_18 PF13746.1 gi|282163287|ref|YP_003355672.1| - 5.9e-08 33.0 35.1 0.00034 20.9 2.0 4.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282163287|ref|YP_003355672.1| - 1.4e-05 25.3 32.9 0.00093 19.5 9.6 4.0 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282163287|ref|YP_003355672.1| - 0.00049 20.5 29.5 0.15 12.6 5.6 4.0 2 2 1 3 3 3 3 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|282163287|ref|YP_003355672.1| - 0.084 13.2 1.9 0.084 13.2 1.3 4.1 3 1 1 4 4 4 0 4Fe-4S single cluster domain AFOR_C PF01314.13 gi|282163288|ref|YP_003355673.1| - 3.1e-127 424.4 0.1 3.8e-127 424.1 0.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|282163288|ref|YP_003355673.1| - 1e-80 269.8 0.0 1.5e-80 269.2 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Glutaredoxin PF00462.19 gi|282163289|ref|YP_003355674.1| - 1.8e-18 66.2 0.4 2.2e-18 65.9 0.3 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.1 gi|282163289|ref|YP_003355674.1| - 3.4e-08 33.1 0.4 4.4e-08 32.8 0.3 1.2 1 0 0 1 1 1 1 Thioredoxin domain GST_N_3 PF13417.1 gi|282163289|ref|YP_003355674.1| - 4.5e-06 26.7 0.0 5.4e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ArsC PF03960.10 gi|282163289|ref|YP_003355674.1| - 1.3e-05 25.2 0.2 0.0031 17.5 0.0 2.0 1 1 1 2 2 2 2 ArsC family Thioredoxin_2 PF13098.1 gi|282163289|ref|YP_003355674.1| - 8.1e-05 22.7 0.4 0.0038 17.4 0.2 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain DUF836 PF05768.9 gi|282163289|ref|YP_003355674.1| - 0.00017 21.7 0.0 0.00019 21.6 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_4 PF13462.1 gi|282163289|ref|YP_003355674.1| - 0.00028 20.9 0.3 0.12 12.3 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin GST_N_2 PF13409.1 gi|282163289|ref|YP_003355674.1| - 0.027 14.4 0.0 0.031 14.2 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|282163289|ref|YP_003355674.1| - 0.056 13.6 0.0 0.066 13.3 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin PF00085.15 gi|282163289|ref|YP_003355674.1| - 0.056 13.1 0.0 0.068 12.8 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin DSBA PF01323.15 gi|282163289|ref|YP_003355674.1| - 0.066 12.7 0.8 3.8 7.0 0.0 2.0 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Pyr_redox_2 PF07992.9 gi|282163290|ref|YP_003355675.1| - 5.3e-32 111.3 0.0 9.7e-32 110.4 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|282163290|ref|YP_003355675.1| - 3.2e-18 66.5 0.4 1.4e-12 48.0 0.0 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|282163290|ref|YP_003355675.1| - 4.3e-09 36.6 4.0 4.5e-06 26.9 0.5 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|282163290|ref|YP_003355675.1| - 1.5e-08 33.9 7.3 0.00021 20.2 0.5 3.4 3 1 1 4 4 4 3 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|282163290|ref|YP_003355675.1| - 4.3e-07 29.1 3.0 0.009 14.9 0.0 3.1 2 1 1 3 3 3 2 Lycopene cyclase protein HI0933_like PF03486.9 gi|282163290|ref|YP_003355675.1| - 2e-06 26.5 4.8 0.0003 19.3 0.4 3.0 3 0 0 3 3 3 2 HI0933-like protein K_oxygenase PF13434.1 gi|282163290|ref|YP_003355675.1| - 3.1e-06 26.3 0.2 0.00077 18.4 0.0 2.4 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.19 gi|282163290|ref|YP_003355675.1| - 8.8e-06 24.8 9.0 0.0001 21.3 0.5 3.8 3 1 1 4 4 4 1 FAD binding domain FAD_oxidored PF12831.2 gi|282163290|ref|YP_003355675.1| - 2.1e-05 23.8 3.8 2.3e-05 23.6 0.1 2.4 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|282163290|ref|YP_003355675.1| - 6.4e-05 22.7 2.4 0.0081 15.9 0.0 2.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding DAO PF01266.19 gi|282163290|ref|YP_003355675.1| - 0.0001 21.3 6.6 0.038 12.8 0.4 3.2 2 1 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|282163290|ref|YP_003355675.1| - 0.00011 22.0 0.1 0.00033 20.6 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|282163290|ref|YP_003355675.1| - 0.00029 20.0 0.3 0.00029 20.0 0.2 2.3 2 1 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.1 gi|282163290|ref|YP_003355675.1| - 0.00036 20.7 1.5 0.038 14.2 0.4 2.8 2 2 0 2 2 2 1 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|282163290|ref|YP_003355675.1| - 0.0016 18.5 3.6 0.014 15.4 0.0 2.8 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|282163290|ref|YP_003355675.1| - 0.1 12.1 1.6 1.2 8.6 0.1 2.8 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Sirohm_synth_M PF14824.1 gi|282163290|ref|YP_003355675.1| - 0.12 11.3 0.0 0.29 10.1 0.0 1.7 1 0 0 1 1 1 0 Sirohaem biosynthesis protein central Trp_halogenase PF04820.9 gi|282163290|ref|YP_003355675.1| - 0.24 9.9 3.4 2.2 6.8 0.3 2.5 3 0 0 3 3 3 0 Tryptophan halogenase MreB_Mbl PF06723.8 gi|282163292|ref|YP_003355677.1| - 5.2e-09 35.1 0.0 6.6e-09 34.7 0.0 1.1 1 0 0 1 1 1 1 MreB/Mbl protein PilM_2 PF11104.3 gi|282163292|ref|YP_003355677.1| - 0.0011 17.9 0.1 0.0043 15.9 0.1 1.8 1 1 0 1 1 1 1 Type IV pilus assembly protein PilM; BcrAD_BadFG PF01869.15 gi|282163292|ref|YP_003355677.1| - 0.0012 18.1 0.0 0.005 16.1 0.0 1.9 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.1 gi|282163292|ref|YP_003355677.1| - 0.0031 17.3 0.1 0.0087 15.8 0.1 1.8 1 1 0 1 1 1 1 Cell division protein FtsA Actin PF00022.14 gi|282163292|ref|YP_003355677.1| - 0.0031 16.0 0.0 0.0049 15.3 0.0 1.3 1 0 0 1 1 1 1 Actin CarboxypepD_reg PF13620.1 gi|282163293|ref|YP_003355678.1| - 1.6e-23 82.5 12.3 2.2e-09 37.2 0.3 4.7 4 0 0 4 4 4 4 Carboxypeptidase regulatory-like domain PEGA PF08308.6 gi|282163293|ref|YP_003355678.1| - 5.3e-12 45.3 0.3 2.9e-11 42.9 0.0 2.3 2 1 0 2 2 2 1 PEGA domain DUF4480 PF13715.1 gi|282163293|ref|YP_003355678.1| - 6.5e-12 45.3 11.6 3e-05 23.9 0.2 4.6 4 0 0 4 4 4 2 Domain of unknown function (DUF4480) Dioxygenase_C PF00775.16 gi|282163293|ref|YP_003355678.1| - 1.9e-10 40.2 0.6 6.4e-05 22.2 0.0 2.6 2 1 0 2 2 2 2 Dioxygenase MG1 PF11974.3 gi|282163293|ref|YP_003355678.1| - 5.8e-08 33.1 0.6 0.0055 17.2 0.0 3.2 3 1 0 3 3 3 2 Alpha-2-macroglobulin MG1 domain DUF1416 PF07210.7 gi|282163293|ref|YP_003355678.1| - 1.4e-07 30.9 0.2 0.027 14.0 0.0 3.4 3 0 0 3 3 3 2 Protein of unknown function (DUF1416) Cna_B PF05738.8 gi|282163293|ref|YP_003355678.1| - 1.1e-06 28.3 10.7 0.00026 20.6 0.3 3.7 4 0 0 4 4 4 2 Cna protein B-type domain fn3_3 PF14686.1 gi|282163293|ref|YP_003355678.1| - 1.6e-06 28.1 13.1 0.00074 19.5 2.7 3.6 3 0 0 3 3 3 2 Polysaccharide lyase family 4, domain II Big_1 PF02369.11 gi|282163293|ref|YP_003355678.1| - 9.5e-05 22.2 10.8 0.0057 16.5 1.3 3.1 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) Pollen_Ole_e_I PF01190.12 gi|282163293|ref|YP_003355678.1| - 0.00023 20.9 0.7 0.75 9.6 0.0 3.4 3 0 0 3 3 3 1 Pollen proteins Ole e I like DUF4198 PF10670.4 gi|282163293|ref|YP_003355678.1| - 0.0013 18.8 7.6 0.82 9.6 0.0 4.3 4 0 0 4 4 4 2 Domain of unknown function (DUF4198) phage_tail_N PF08400.5 gi|282163293|ref|YP_003355678.1| - 0.013 15.2 8.5 2.2 8.0 0.3 4.1 4 0 0 4 4 4 0 Prophage tail fibre N-terminal TPPII_N PF12583.3 gi|282163293|ref|YP_003355678.1| - 0.082 13.0 1.5 2.2 8.3 0.1 2.6 2 0 0 2 2 2 0 Tripeptidyl peptidase II N terminal Radical_SAM PF04055.16 gi|282163294|ref|YP_003355679.1| - 3.2e-18 66.4 0.2 7.2e-18 65.3 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|282163294|ref|YP_003355679.1| - 0.00064 19.8 0.5 0.0012 18.9 0.3 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-C4_Topoisom PF01396.14 gi|282163294|ref|YP_003355679.1| - 0.0024 17.3 6.5 0.32 10.5 0.0 3.2 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|282163294|ref|YP_003355679.1| - 0.013 14.6 0.1 0.013 14.6 0.1 2.6 3 1 0 3 3 3 0 zinc-ribbon domain YhfH PF14149.1 gi|282163294|ref|YP_003355679.1| - 0.032 14.0 0.5 0.032 14.0 0.3 2.9 3 0 0 3 3 3 0 YhfH-like protein zf-FPG_IleRS PF06827.9 gi|282163294|ref|YP_003355679.1| - 0.13 11.9 0.4 0.13 11.9 0.3 4.0 4 0 0 4 4 4 0 Zinc finger found in FPG and IleRS Fer4_14 PF13394.1 gi|282163294|ref|YP_003355679.1| - 0.43 10.6 2.9 1.7 8.6 2.1 1.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain zinc_ribbon_2 PF13240.1 gi|282163294|ref|YP_003355679.1| - 3.9 7.0 13.4 0.21 11.1 0.4 3.7 3 0 0 3 3 3 0 zinc-ribbon domain AdoMet_Synthase PF01941.14 gi|282163295|ref|YP_003355680.1| - 6.1e-137 456.3 0.5 6.7e-137 456.1 0.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|282163295|ref|YP_003355680.1| - 0.0051 17.0 0.0 0.015 15.5 0.0 1.7 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, N-terminal domain Fe-S_assembly PF04384.8 gi|282163295|ref|YP_003355680.1| - 0.01 16.1 0.1 7.5 7.0 0.0 2.9 3 0 0 3 3 3 0 Iron-sulphur cluster assembly DUF387 PF04079.11 gi|282163296|ref|YP_003355681.1| - 5e-40 136.4 0.1 7e-40 135.9 0.1 1.2 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_20 PF12840.2 gi|282163296|ref|YP_003355681.1| - 0.005 16.6 0.1 0.031 14.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Halogen_Hydrol PF10112.4 gi|282163296|ref|YP_003355681.1| - 0.0062 15.9 0.4 1.5 8.1 0.0 2.1 2 0 0 2 2 2 2 5-bromo-4-chloroindolyl phosphate hydrolysis protein HTH_45 PF14947.1 gi|282163296|ref|YP_003355681.1| - 0.034 13.9 0.9 4.6 7.1 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix ScpA_ScpB PF02616.9 gi|282163297|ref|YP_003355682.1| - 7.1e-33 114.1 0.2 3.9e-32 111.7 0.1 1.8 1 1 0 1 1 1 1 ScpA/B protein Rad21_Rec8 PF04824.11 gi|282163297|ref|YP_003355682.1| - 0.094 11.9 0.0 0.3 10.2 0.0 1.8 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein SMC_N PF02463.14 gi|282163298|ref|YP_003355683.1| - 7.9e-77 257.3 0.0 1.3e-76 256.6 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|282163298|ref|YP_003355683.1| - 2.1e-34 118.0 0.0 1.4e-33 115.4 0.0 2.5 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|282163298|ref|YP_003355683.1| - 3.9e-17 63.2 5.9 3.9e-17 63.2 4.1 5.8 3 2 1 4 4 3 1 AAA domain AAA_21 PF13304.1 gi|282163298|ref|YP_003355683.1| - 2.9e-13 50.4 12.5 7.5e-07 29.3 0.0 3.3 3 1 1 4 4 4 2 AAA domain AAA_13 PF13166.1 gi|282163298|ref|YP_003355683.1| - 1.9e-09 36.5 73.8 2.6e-06 26.2 7.2 5.7 3 2 2 5 5 5 4 AAA domain Reo_sigmaC PF04582.7 gi|282163298|ref|YP_003355683.1| - 2.9e-07 29.9 22.8 0.00039 19.7 0.1 4.8 4 1 0 4 4 4 3 Reovirus sigma C capsid protein AAA_29 PF13555.1 gi|282163298|ref|YP_003355683.1| - 7.7e-06 25.3 0.0 1.6e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MscS_porin PF12795.2 gi|282163298|ref|YP_003355683.1| - 0.00038 19.8 6.3 0.00038 19.8 4.4 6.1 4 2 1 5 5 5 1 Mechanosensitive ion channel porin domain AAA_15 PF13175.1 gi|282163298|ref|YP_003355683.1| - 0.00041 19.5 32.2 0.0049 15.9 0.1 4.3 3 2 0 3 3 3 2 AAA ATPase domain DUF3584 PF12128.3 gi|282163298|ref|YP_003355683.1| - 0.00069 17.1 70.0 0.0011 16.4 3.2 5.1 3 2 2 5 5 5 3 Protein of unknown function (DUF3584) IncA PF04156.9 gi|282163298|ref|YP_003355683.1| - 0.0037 16.8 10.4 0.0037 16.8 7.2 7.2 2 2 4 6 6 6 3 IncA protein DUF869 PF05911.6 gi|282163298|ref|YP_003355683.1| - 0.011 13.9 70.1 0.0036 15.6 17.4 5.4 2 2 3 5 5 5 0 Plant protein of unknown function (DUF869) Spc7 PF08317.6 gi|282163298|ref|YP_003355683.1| - 0.13 10.8 83.1 0.034 12.8 4.2 6.9 2 2 5 7 7 7 0 Spc7 kinetochore protein Myosin_tail_1 PF01576.14 gi|282163298|ref|YP_003355683.1| - 1.1 6.8 102.1 0.067 10.9 12.3 4.2 2 2 1 4 4 4 0 Myosin tail Laminin_I PF06008.9 gi|282163298|ref|YP_003355683.1| - 5.7 6.1 58.5 0.35 10.1 4.0 4.9 4 1 0 4 4 4 0 Laminin Domain I Nsp1_C PF05064.8 gi|282163298|ref|YP_003355683.1| - 8.5 6.0 23.8 0.079 12.6 0.2 5.9 5 1 1 6 6 6 0 Nsp1-like C-terminal region Phage_GP20 PF06810.6 gi|282163299|ref|YP_003355684.1| - 0.00048 19.5 1.6 0.00069 19.0 1.1 1.2 1 0 0 1 1 1 1 Phage minor structural protein GP20 Prominin PF05478.6 gi|282163299|ref|YP_003355684.1| - 0.0021 15.7 0.2 0.0026 15.4 0.1 1.0 1 0 0 1 1 1 1 Prominin SlyX PF04102.7 gi|282163299|ref|YP_003355684.1| - 0.0027 18.0 0.2 1.9 8.9 0.0 2.3 2 0 0 2 2 2 1 SlyX TMF_DNA_bd PF12329.3 gi|282163299|ref|YP_003355684.1| - 0.0089 15.8 5.3 0.044 13.5 3.7 2.0 1 1 0 1 1 1 1 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|282163299|ref|YP_003355684.1| - 0.013 15.1 1.0 0.017 14.7 0.7 1.1 1 0 0 1 1 1 0 IncA protein DUF641 PF04859.7 gi|282163299|ref|YP_003355684.1| - 0.019 14.7 5.2 0.047 13.4 0.9 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) KLRAQ PF10205.4 gi|282163299|ref|YP_003355684.1| - 0.021 14.8 0.8 0.032 14.2 0.6 1.3 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein Prefoldin_2 PF01920.15 gi|282163299|ref|YP_003355684.1| - 0.028 14.1 4.0 2.3 7.9 0.8 2.2 2 0 0 2 2 2 0 Prefoldin subunit EzrA PF06160.7 gi|282163299|ref|YP_003355684.1| - 0.031 12.4 0.7 0.04 12.1 0.5 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF1664 PF07889.7 gi|282163299|ref|YP_003355684.1| - 0.057 13.2 1.7 0.16 11.7 1.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) bZIP_1 PF00170.16 gi|282163299|ref|YP_003355684.1| - 0.066 13.1 3.8 3.7 7.5 1.0 2.2 2 0 0 2 2 2 0 bZIP transcription factor Tropomyosin_1 PF12718.2 gi|282163299|ref|YP_003355684.1| - 0.067 13.0 5.5 0.23 11.3 3.7 1.8 1 1 0 1 1 1 0 Tropomyosin like Reo_sigmaC PF04582.7 gi|282163299|ref|YP_003355684.1| - 0.1 11.7 0.1 0.12 11.4 0.1 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|282163299|ref|YP_003355684.1| - 0.12 12.6 1.3 1 9.6 0.1 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein End3 PF12761.2 gi|282163299|ref|YP_003355684.1| - 0.18 11.4 2.1 0.28 10.7 1.5 1.2 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Lebercilin PF15619.1 gi|282163299|ref|YP_003355684.1| - 0.23 10.8 4.2 0.54 9.6 2.9 1.6 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Spc24 PF08286.6 gi|282163299|ref|YP_003355684.1| - 0.26 10.9 3.8 1.8 8.2 0.1 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Rho_Binding PF08912.6 gi|282163299|ref|YP_003355684.1| - 0.26 11.5 4.7 0.45 10.8 3.2 1.3 1 0 0 1 1 1 0 Rho Binding Med4 PF10018.4 gi|282163299|ref|YP_003355684.1| - 0.27 10.5 3.9 2.8 7.3 0.8 2.1 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 APG6 PF04111.7 gi|282163299|ref|YP_003355684.1| - 0.32 10.0 2.3 0.39 9.6 1.6 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4140 PF13600.1 gi|282163299|ref|YP_003355684.1| - 0.59 10.6 3.3 19 5.7 0.0 2.2 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF972 PF06156.8 gi|282163299|ref|YP_003355684.1| - 0.65 10.3 3.1 2 8.8 2.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Seryl_tRNA_N PF02403.17 gi|282163299|ref|YP_003355684.1| - 0.76 9.8 5.5 0.53 10.3 2.3 1.9 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF2730 PF10805.3 gi|282163299|ref|YP_003355684.1| - 0.84 9.4 3.4 1.4 8.7 2.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) COG2 PF06148.6 gi|282163299|ref|YP_003355684.1| - 0.89 9.4 3.4 6.4 6.6 2.1 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4094 PF13334.1 gi|282163299|ref|YP_003355684.1| - 0.89 9.9 4.1 21 5.5 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) Sec2p PF06428.6 gi|282163299|ref|YP_003355684.1| - 1.2 9.0 5.9 10 6.0 0.7 2.1 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p DUF2312 PF10073.4 gi|282163299|ref|YP_003355684.1| - 2.7 7.3 7.7 1.4 8.3 0.1 2.5 2 1 1 3 3 2 0 Uncharacterized protein conserved in bacteria (DUF2312) Sugarporin_N PF11471.3 gi|282163299|ref|YP_003355684.1| - 6.3 6.5 7.4 4.4 7.0 1.4 2.5 2 1 1 3 3 3 0 Maltoporin periplasmic N-terminal extension DUF3160 PF11369.3 gi|282163300|ref|YP_003355685.1| - 7.8e-227 754.5 0.2 9e-227 754.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) TAT_signal PF10518.4 gi|282163300|ref|YP_003355685.1| - 0.00039 20.1 4.5 0.0011 18.7 3.1 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence IF-2B PF01008.12 gi|282163301|ref|YP_003355686.1| - 4.7e-85 284.9 0.0 5.5e-85 284.7 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family ACT PF01842.20 gi|282163302|ref|YP_003355687.1| - 5e-11 41.8 0.1 1e-09 37.6 0.0 2.6 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|282163302|ref|YP_003355687.1| - 6.3e-06 26.4 0.0 1.4e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 ACT domain Transketolase_C PF02780.15 gi|282163302|ref|YP_003355687.1| - 0.0024 17.8 0.2 0.005 16.7 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Peripla_BP_1 PF00532.16 gi|282163302|ref|YP_003355687.1| - 0.0039 16.4 0.0 0.0088 15.2 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family ACT_6 PF13740.1 gi|282163302|ref|YP_003355687.1| - 0.016 14.9 0.0 0.037 13.7 0.0 1.6 1 0 0 1 1 1 0 ACT domain ACT_5 PF13710.1 gi|282163302|ref|YP_003355687.1| - 0.053 13.3 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 ACT domain AhpC-TSA PF00578.16 gi|282163303|ref|YP_003355688.1| - 6.1e-40 135.7 0.0 8.5e-40 135.2 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|282163303|ref|YP_003355688.1| - 3.2e-18 65.6 0.0 4.3e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|282163303|ref|YP_003355688.1| - 1.5e-17 62.9 0.3 2.8e-17 62.0 0.2 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Isochorismatase PF00857.15 gi|282163305|ref|YP_003355690.1| - 1.8e-22 80.1 0.0 2.6e-22 79.5 0.0 1.3 1 0 0 1 1 1 1 Isochorismatase family Cpn60_TCP1 PF00118.19 gi|282163306|ref|YP_003355691.1| - 1.9e-172 574.2 13.7 2.1e-172 574.0 9.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3924 PF13062.1 gi|282163306|ref|YP_003355691.1| - 0.018 14.8 0.2 0.3 10.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3924) Inhibitor_I42 PF09394.5 gi|282163307|ref|YP_003355692.1| - 3.1e-14 53.0 0.0 4.3e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 PAPS_reduct PF01507.14 gi|282163308|ref|YP_003355693.1| - 1e-42 145.8 0.0 1.6e-42 145.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.15 gi|282163308|ref|YP_003355693.1| - 1.4e-16 59.9 0.4 3.7e-16 58.6 0.2 1.7 1 0 0 1 1 1 1 PUA domain Fer4_7 PF12838.2 gi|282163308|ref|YP_003355693.1| - 2e-06 28.1 13.3 2e-06 28.1 9.2 2.5 3 0 0 3 3 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282163308|ref|YP_003355693.1| - 3.2e-06 27.0 8.0 3.2e-06 27.0 5.5 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282163308|ref|YP_003355693.1| - 7.4e-06 25.6 11.3 7.4e-06 25.6 7.8 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282163308|ref|YP_003355693.1| - 1.1e-05 24.8 19.1 4.3e-05 22.9 5.0 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|282163308|ref|YP_003355693.1| - 0.00014 22.0 24.6 0.00031 20.9 10.1 3.3 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282163308|ref|YP_003355693.1| - 0.0021 17.8 14.3 0.0021 17.8 9.9 3.1 4 1 1 5 5 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282163308|ref|YP_003355693.1| - 0.0056 17.0 16.1 0.13 12.6 2.3 3.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282163308|ref|YP_003355693.1| - 0.012 16.3 1.2 0.012 16.3 0.8 3.4 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|282163308|ref|YP_003355693.1| - 0.015 15.5 1.3 0.015 15.5 0.9 4.0 4 1 0 4 4 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|282163308|ref|YP_003355693.1| - 0.062 13.6 0.9 0.062 13.6 0.6 3.3 3 1 2 5 5 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282163308|ref|YP_003355693.1| - 1.9 8.9 11.4 4 7.8 0.9 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|282163308|ref|YP_003355693.1| - 3.5 8.2 15.8 11 6.7 2.9 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|282163308|ref|YP_003355693.1| - 3.9 7.5 30.7 0.084 12.8 3.4 3.8 4 0 0 4 4 3 0 4Fe-4S binding domain GATase PF00117.23 gi|282163309|ref|YP_003355694.1| - 1.2e-32 112.8 0.0 1.5e-32 112.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|282163309|ref|YP_003355694.1| - 1.3e-06 28.1 0.0 2.7e-06 27.0 0.0 1.5 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|282163309|ref|YP_003355694.1| - 4.8e-06 26.3 0.0 6.6e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|282163309|ref|YP_003355694.1| - 9.6e-05 21.9 0.2 0.00034 20.1 0.1 1.9 1 1 0 1 1 1 1 Peptidase C26 GtrA PF04138.9 gi|282163310|ref|YP_003355695.1| - 3.1e-19 69.0 17.9 5.5e-19 68.2 12.5 1.3 1 1 0 1 1 1 1 GtrA-like protein DisA_N PF02457.11 gi|282163311|ref|YP_003355696.1| - 1.6e-14 53.0 0.4 2.9e-14 52.2 0.3 1.4 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding Glyco_tranf_2_3 PF13641.1 gi|282163312|ref|YP_003355697.1| - 6.4e-39 134.0 0.0 9.1e-39 133.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|282163312|ref|YP_003355697.1| - 9.9e-30 103.6 1.0 9.9e-30 103.6 0.7 1.9 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|282163312|ref|YP_003355697.1| - 2.7e-22 79.2 0.0 4.3e-22 78.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|282163312|ref|YP_003355697.1| - 4.3e-15 55.4 0.0 6.2e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|282163312|ref|YP_003355697.1| - 1.6e-09 37.2 0.0 5e-09 35.6 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 4HB_MCP_1 PF12729.2 gi|282163312|ref|YP_003355697.1| - 0.13 11.6 0.0 0.41 9.9 0.0 1.8 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Orai-1 PF07856.7 gi|282163312|ref|YP_003355697.1| - 2.3 7.7 7.2 0.14 11.6 1.2 1.7 2 0 0 2 2 2 0 Mediator of CRAC channel activity AhpC-TSA PF00578.16 gi|282163313|ref|YP_003355698.1| - 5.2e-27 93.9 0.0 6.3e-27 93.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|282163313|ref|YP_003355698.1| - 7.2e-18 64.5 0.0 8.7e-18 64.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|282163313|ref|YP_003355698.1| - 2.6e-06 27.4 0.0 3.9e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like DUF899 PF05988.7 gi|282163313|ref|YP_003355698.1| - 0.0091 15.4 0.0 0.011 15.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Thioredoxin PF00085.15 gi|282163313|ref|YP_003355698.1| - 0.068 12.8 0.0 0.099 12.3 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin dUTPase PF00692.14 gi|282163314|ref|YP_003355699.1| - 6.8e-13 48.2 0.0 1.1e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 dUTPase UPF0066 PF01980.11 gi|282163315|ref|YP_003355700.1| - 2.5e-35 121.0 0.0 2.9e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 AIM24 PF01987.12 gi|282163316|ref|YP_003355701.1| - 3e-65 219.6 0.7 3.4e-65 219.5 0.5 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 LVIVD PF08309.6 gi|282163317|ref|YP_003355702.1| - 0.0012 17.8 0.8 0.0026 16.6 0.6 1.5 1 0 0 1 1 1 1 LVIVD repeat FAP PF07174.6 gi|282163317|ref|YP_003355702.1| - 0.033 13.5 9.9 0.054 12.7 6.9 1.3 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) PsbR PF04725.7 gi|282163317|ref|YP_003355702.1| - 0.12 12.3 0.7 3.4 7.7 0.0 2.4 2 0 0 2 2 2 0 Photosystem II 10 kDa polypeptide PsbR DUF1180 PF06679.7 gi|282163317|ref|YP_003355702.1| - 0.19 11.5 3.1 0.33 10.8 2.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) AflR PF08493.5 gi|282163317|ref|YP_003355702.1| - 0.22 10.5 6.1 0.28 10.1 4.2 1.1 1 0 0 1 1 1 0 Aflatoxin regulatory protein Neisseria_TspB PF05616.8 gi|282163317|ref|YP_003355702.1| - 0.79 8.0 6.1 1.2 7.4 4.2 1.2 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein Fer4 PF00037.22 gi|282163318|ref|YP_003355703.1| - 1.9e-11 43.0 12.3 8e-06 25.2 1.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282163318|ref|YP_003355703.1| - 4.3e-10 39.8 27.4 3.8e-08 33.5 10.3 2.6 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282163318|ref|YP_003355703.1| - 1.2e-07 31.8 24.8 2.5e-06 27.6 9.2 3.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282163318|ref|YP_003355703.1| - 3.4e-07 29.9 12.1 3.4e-07 29.9 8.4 2.3 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282163318|ref|YP_003355703.1| - 3.9e-07 29.6 21.7 0.00014 21.5 2.0 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282163318|ref|YP_003355703.1| - 0.00019 21.1 4.1 0.00019 21.1 2.8 3.2 3 1 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282163318|ref|YP_003355703.1| - 0.00025 20.8 11.3 0.00025 20.8 7.9 2.7 2 1 3 5 5 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282163318|ref|YP_003355703.1| - 0.0005 20.0 14.4 0.0005 20.0 10.0 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282163318|ref|YP_003355703.1| - 0.0017 19.0 10.7 0.015 15.9 1.1 3.1 4 0 0 4 4 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|282163318|ref|YP_003355703.1| - 0.016 15.4 4.1 0.016 15.4 2.8 3.7 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|282163318|ref|YP_003355703.1| - 0.041 14.4 2.3 0.041 14.4 1.6 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|282163318|ref|YP_003355703.1| - 1.2 9.5 29.4 0.25 11.7 1.4 3.1 1 1 2 3 3 2 0 4Fe-4S dicluster domain AAA_16 PF13191.1 gi|282163319|ref|YP_003355704.1| - 3.4e-11 43.4 0.0 1.2e-09 38.4 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|282163319|ref|YP_003355704.1| - 8.9e-10 38.8 0.0 1.6e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|282163319|ref|YP_003355704.1| - 5e-08 32.5 0.2 1.4e-07 31.1 0.1 1.8 1 1 0 1 1 1 1 CDC6, C terminal Arch_ATPase PF01637.13 gi|282163319|ref|YP_003355704.1| - 0.00017 21.3 0.0 0.00042 20.0 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|282163319|ref|YP_003355704.1| - 0.0019 17.8 0.0 0.003 17.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|282163319|ref|YP_003355704.1| - 0.0024 18.0 0.0 0.0073 16.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|282163319|ref|YP_003355704.1| - 0.0036 17.0 0.1 0.018 14.8 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_11 PF13086.1 gi|282163319|ref|YP_003355704.1| - 0.0076 15.8 0.0 0.0099 15.4 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|282163319|ref|YP_003355704.1| - 0.014 15.2 0.1 2.3 8.1 0.0 2.5 1 1 0 2 2 2 0 AAA domain DUF815 PF05673.8 gi|282163319|ref|YP_003355704.1| - 0.027 13.3 0.0 0.14 11.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|282163319|ref|YP_003355704.1| - 0.04 12.8 0.0 0.06 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KAP_NTPase PF07693.9 gi|282163319|ref|YP_003355704.1| - 0.056 12.4 0.1 5 6.0 0.0 2.1 1 1 0 2 2 2 0 KAP family P-loop domain Phage-MuB_C PF09077.6 gi|282163319|ref|YP_003355704.1| - 0.092 12.4 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Mu B transposition protein, C terminal IstB_IS21 PF01695.12 gi|282163319|ref|YP_003355704.1| - 0.18 11.2 0.4 0.69 9.3 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein Mannosyl_trans2 PF04188.8 gi|282163320|ref|YP_003355705.1| - 2.5e-10 39.8 8.6 5.7e-10 38.6 6.0 1.7 1 1 0 1 1 1 1 Mannosyltransferase (PIG-V)) PMT_2 PF13231.1 gi|282163320|ref|YP_003355705.1| - 2.7e-10 40.3 10.3 2.7e-10 40.3 7.1 3.1 2 1 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF754 PF05449.6 gi|282163320|ref|YP_003355705.1| - 0.13 12.3 3.8 0.18 11.8 0.0 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF754) SWIM PF04434.12 gi|282163321|ref|YP_003355706.1| - 0.00054 19.3 0.2 0.00087 18.7 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger NIF3 PF01784.13 gi|282163322|ref|YP_003355707.1| - 8.1e-52 176.1 0.0 1e-51 175.8 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Radical_SAM PF04055.16 gi|282163323|ref|YP_003355708.1| - 4.6e-32 111.4 0.0 7.6e-32 110.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|282163323|ref|YP_003355708.1| - 6.7e-22 77.5 0.1 1.1e-21 76.8 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|282163323|ref|YP_003355708.1| - 6.7e-09 35.7 0.0 1.3e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|282163323|ref|YP_003355708.1| - 4.7e-08 33.2 0.0 8e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Dpoe2NT PF12213.3 gi|282163323|ref|YP_003355708.1| - 0.11 12.3 0.0 9.9 6.1 0.0 2.4 2 0 0 2 2 2 0 DNA polymerases epsilon N terminal GDE_N_bis PF14742.1 gi|282163324|ref|YP_003355709.1| - 2.2e-50 170.7 0.0 3.6e-50 170.0 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.9 gi|282163324|ref|YP_003355709.1| - 1.1e-13 50.6 0.0 5.3e-13 48.4 0.0 2.1 1 1 1 2 2 2 1 Amylo-alpha-1,6-glucosidase Glyco_hydro_63 PF03200.11 gi|282163324|ref|YP_003355709.1| - 0.012 13.4 0.2 0.018 12.9 0.1 1.1 1 0 0 1 1 1 0 Mannosyl oligosaccharide glucosidase Trehalase PF01204.13 gi|282163324|ref|YP_003355709.1| - 0.097 11.2 0.0 0.18 10.3 0.0 1.3 1 0 0 1 1 1 0 Trehalase Glycos_transf_1 PF00534.15 gi|282163325|ref|YP_003355710.1| - 4.2e-29 101.1 0.0 6.3e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282163325|ref|YP_003355710.1| - 1.3e-17 64.0 0.1 2.9e-17 62.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|282163325|ref|YP_003355710.1| - 7.6e-15 55.2 0.0 2.5e-14 53.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282163325|ref|YP_003355710.1| - 2.5e-11 43.9 0.0 6.9e-11 42.5 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|282163325|ref|YP_003355710.1| - 2.3e-06 27.7 0.0 5.2e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|282163325|ref|YP_003355710.1| - 0.0017 17.9 0.6 0.09 12.2 0.1 2.3 1 1 1 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|282163325|ref|YP_003355710.1| - 0.015 15.1 0.0 0.035 13.9 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|282163326|ref|YP_003355711.1| - 6.6e-29 100.5 0.0 1.2e-28 99.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282163326|ref|YP_003355711.1| - 3.5e-14 53.1 0.0 8.1e-14 51.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282163326|ref|YP_003355711.1| - 1.1e-11 44.7 0.0 2.8e-11 43.4 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|282163326|ref|YP_003355711.1| - 1.9e-11 44.3 0.0 5.6e-11 42.8 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|282163326|ref|YP_003355711.1| - 0.00073 19.7 0.0 0.0016 18.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 PIG-L PF02585.12 gi|282163326|ref|YP_003355711.1| - 0.0042 17.5 0.0 0.58 10.6 0.0 2.6 2 1 0 2 2 2 1 GlcNAc-PI de-N-acetylase Epimerase_2 PF02350.14 gi|282163326|ref|YP_003355711.1| - 0.0072 15.1 0.0 0.018 13.8 0.0 1.6 1 1 1 2 2 2 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_2 PF13477.1 gi|282163326|ref|YP_003355711.1| - 0.012 15.4 0.0 0.031 14.1 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|282163326|ref|YP_003355711.1| - 0.022 14.2 1.4 0.21 11.0 0.6 2.4 3 0 0 3 3 3 0 Starch synthase catalytic domain ThiS PF02597.15 gi|282163327|ref|YP_003355712.1| - 7.8e-11 42.2 0.0 8.6e-11 42.1 0.0 1.1 1 0 0 1 1 1 1 ThiS family TGS PF02824.16 gi|282163327|ref|YP_003355712.1| - 0.0014 18.4 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 TGS domain Lambda_tail_I PF06805.7 gi|282163327|ref|YP_003355712.1| - 0.015 15.1 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I Urm1 PF09138.6 gi|282163327|ref|YP_003355712.1| - 0.13 12.3 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) AFOR_C PF01314.13 gi|282163328|ref|YP_003355713.1| - 3.9e-107 358.2 0.0 4.8e-107 357.9 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|282163328|ref|YP_003355713.1| - 1.3e-72 243.4 0.0 1.9e-72 242.8 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DHDPS PF00701.17 gi|282163329|ref|YP_003355714.1| - 2.1e-61 207.1 0.0 2.4e-61 206.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family NUDIX PF00293.23 gi|282163330|ref|YP_003355715.1| - 2.6e-16 59.5 0.0 2.9e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain DUF2551 PF10826.3 gi|282163331|ref|YP_003355716.1| - 1.1e-30 105.3 1.2 1.3e-30 105.1 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Abhydrolase_6 PF12697.2 gi|282163332|ref|YP_003355717.1| - 0.0043 16.9 0.0 0.0077 16.1 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family PHP PF02811.14 gi|282163333|ref|YP_003355718.1| - 4.6e-16 59.1 0.2 1.2e-15 57.7 0.1 1.8 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|282163333|ref|YP_003355718.1| - 1.6e-11 43.4 2.5 8.4e-11 41.2 0.1 2.7 3 0 0 3 3 3 1 PHP-associated Cpn60_TCP1 PF00118.19 gi|282163334|ref|YP_003355719.1| - 2.6e-162 540.8 7.8 3.2e-162 540.5 5.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF340 PF03956.8 gi|282163335|ref|YP_003355720.1| - 3e-08 33.1 2.6 3.9e-08 32.8 1.8 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function (DUF340) DUF2207 PF09972.4 gi|282163335|ref|YP_003355720.1| - 0.039 12.5 1.9 0.045 12.3 1.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4181 PF13789.1 gi|282163335|ref|YP_003355720.1| - 0.06 13.2 0.7 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4181) Bax1-I PF01027.15 gi|282163335|ref|YP_003355720.1| - 0.14 11.7 6.5 0.18 11.4 4.5 1.2 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF4233 PF14017.1 gi|282163335|ref|YP_003355720.1| - 0.16 11.8 5.6 0.21 11.5 3.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4233) NMN_transporter PF04973.7 gi|282163335|ref|YP_003355720.1| - 0.2 11.1 2.2 0.21 11.0 0.2 1.7 1 1 1 2 2 2 0 Nicotinamide mononucleotide transporter Peptidase_A24 PF01478.13 gi|282163335|ref|YP_003355720.1| - 0.49 10.5 4.3 1.2 9.3 3.0 1.7 1 1 0 1 1 1 0 Type IV leader peptidase family DUF3792 PF12670.2 gi|282163335|ref|YP_003355720.1| - 0.91 9.4 10.1 1.1 9.0 7.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) DUF340 PF03956.8 gi|282163336|ref|YP_003355721.1| - 1.2e-60 204.0 20.1 1.4e-60 203.8 13.9 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function (DUF340) DUF3551 PF12071.3 gi|282163337|ref|YP_003355722.1| - 0.13 11.7 0.7 0.18 11.3 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3551) DHHA1 PF02272.14 gi|282163338|ref|YP_003355723.1| - 8.8e-13 47.7 2.1 1.8e-12 46.7 1.5 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|282163338|ref|YP_003355723.1| - 2.2e-11 43.5 0.0 3.2e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 DHH family DUF2150 PF09920.4 gi|282163339|ref|YP_003355724.1| - 7.4e-61 205.0 0.7 8.5e-61 204.8 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) AA_kinase PF00696.23 gi|282163340|ref|YP_003355725.1| - 4.3e-12 46.0 0.0 3.3e-10 39.9 0.0 2.1 1 1 0 1 1 1 1 Amino acid kinase family TauE PF01925.14 gi|282163341|ref|YP_003355726.1| - 7.7e-46 156.4 37.5 8.8e-46 156.2 26.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE MtrD PF04207.7 gi|282163341|ref|YP_003355726.1| - 0.013 14.8 11.9 0.014 14.7 2.0 2.5 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit D DUF3938 PF13074.1 gi|282163341|ref|YP_003355726.1| - 0.071 12.9 0.5 0.24 11.2 0.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3938) UPF0154 PF03672.8 gi|282163341|ref|YP_003355726.1| - 0.22 11.1 0.1 0.22 11.1 0.1 3.4 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0154) BNIP3 PF06553.7 gi|282163341|ref|YP_003355726.1| - 0.44 9.8 1.2 15 4.8 0.0 2.7 2 1 1 3 3 3 0 BNIP3 Pox_A9 PF04835.7 gi|282163341|ref|YP_003355726.1| - 1.9 8.4 0.0 1.9 8.4 0.0 3.6 5 0 0 5 5 5 0 A9 protein conserved region DsbD_2 PF13386.1 gi|282163342|ref|YP_003355727.1| - 5.5e-19 68.7 18.8 7e-19 68.3 13.1 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region MNHE PF01899.11 gi|282163342|ref|YP_003355727.1| - 7.8 6.1 7.8 9 5.9 0.1 2.7 2 2 0 2 2 2 0 Na+/H+ ion antiporter subunit HTH_5 PF01022.15 gi|282163344|ref|YP_003355729.1| - 1.8e-12 46.7 0.0 2.9e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|282163344|ref|YP_003355729.1| - 9.7e-10 38.1 0.0 1.4e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|282163344|ref|YP_003355729.1| - 0.00012 22.0 0.0 0.00027 20.9 0.0 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|282163344|ref|YP_003355729.1| - 0.00092 18.9 0.2 0.0019 17.9 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix HxlR PF01638.12 gi|282163344|ref|YP_003355729.1| - 0.013 15.0 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|282163344|ref|YP_003355729.1| - 0.019 15.2 0.0 0.039 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|282163344|ref|YP_003355729.1| - 0.04 13.5 0.0 0.06 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Pentaxin PF00354.12 gi|282163344|ref|YP_003355729.1| - 0.095 12.1 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Pentaxin family Zn_Tnp_IS1595 PF12760.2 gi|282163345|ref|YP_003355730.1| - 0.032 14.0 2.9 0.052 13.3 2.0 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain GCC2_GCC3 PF07699.8 gi|282163345|ref|YP_003355730.1| - 0.16 11.6 5.8 0.38 10.3 4.0 1.8 1 1 0 1 1 1 0 GCC2 and GCC3 XPA_N PF01286.13 gi|282163345|ref|YP_003355730.1| - 0.6 9.8 7.7 1.3 8.7 0.1 2.3 2 0 0 2 2 2 0 XPA protein N-terminal FYDLN_acid PF09538.5 gi|282163345|ref|YP_003355730.1| - 0.64 10.6 3.2 0.67 10.5 1.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) IBR PF01485.16 gi|282163345|ref|YP_003355730.1| - 3.3 7.6 7.9 52 3.8 5.5 2.1 1 1 0 1 1 1 0 IBR domain Thioredoxin_3 PF13192.1 gi|282163346|ref|YP_003355731.1| - 2.7e-25 87.9 1.6 2.9e-25 87.8 1.1 1.0 1 0 0 1 1 1 1 Thioredoxin domain ArsD PF06953.6 gi|282163346|ref|YP_003355731.1| - 0.012 15.7 0.0 0.015 15.4 0.0 1.3 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD Thioredoxin PF00085.15 gi|282163346|ref|YP_003355731.1| - 0.016 14.8 0.2 0.018 14.6 0.2 1.2 1 0 0 1 1 1 0 Thioredoxin Glutaredoxin PF00462.19 gi|282163346|ref|YP_003355731.1| - 0.017 15.0 0.6 0.044 13.7 0.4 1.7 1 1 0 1 1 1 0 Glutaredoxin Thioredoxin_4 PF13462.1 gi|282163346|ref|YP_003355731.1| - 0.036 14.0 0.2 0.056 13.4 0.2 1.4 1 1 0 1 1 1 0 Thioredoxin Mo-co_dimer PF03404.11 gi|282163346|ref|YP_003355731.1| - 0.047 13.3 0.1 0.055 13.1 0.1 1.1 1 0 0 1 1 1 0 Mo-co oxidoreductase dimerisation domain GATase PF00117.23 gi|282163346|ref|YP_003355731.1| - 0.07 12.5 0.0 0.075 12.4 0.0 1.1 1 0 0 1 1 1 0 Glutamine amidotransferase class-I DUF318 PF03773.8 gi|282163347|ref|YP_003355732.1| - 2.1e-80 270.0 25.0 2.6e-80 269.6 17.3 1.1 1 0 0 1 1 1 1 Predicted permease MDM31_MDM32 PF08118.6 gi|282163347|ref|YP_003355732.1| - 0.27 9.6 0.8 0.4 9.0 0.6 1.2 1 0 0 1 1 1 0 Yeast mitochondrial distribution and morphology (MDM) proteins MtrA PF04208.9 gi|282163348|ref|YP_003355733.1| - 2.2e-35 121.7 0.0 2.7e-35 121.3 0.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A DGC PF08859.6 gi|282163349|ref|YP_003355734.1| - 1.6e-18 66.5 0.2 1.8e-18 66.4 0.1 1.0 1 0 0 1 1 1 1 DGC domain Pyr_redox_2 PF07992.9 gi|282163350|ref|YP_003355735.1| - 2.4e-26 92.8 0.8 3e-26 92.5 0.5 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|282163350|ref|YP_003355735.1| - 2.5e-10 40.7 0.2 4.2e-07 30.2 0.0 2.5 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|282163350|ref|YP_003355735.1| - 3.2e-07 29.5 0.4 0.00049 19.0 0.0 2.6 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.17 gi|282163350|ref|YP_003355735.1| - 0.00013 20.9 2.3 0.007 15.2 0.2 3.2 3 1 1 4 4 4 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|282163350|ref|YP_003355735.1| - 0.00029 19.4 0.2 0.005 15.3 0.1 2.3 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|282163350|ref|YP_003355735.1| - 0.00038 19.6 0.8 0.0012 18.0 0.1 2.1 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|282163350|ref|YP_003355735.1| - 0.00088 19.6 1.9 0.02 15.2 0.1 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|282163350|ref|YP_003355735.1| - 0.011 14.7 0.2 0.038 12.8 0.1 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|282163350|ref|YP_003355735.1| - 0.012 14.5 0.1 4.8 5.9 0.0 2.5 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.14 gi|282163350|ref|YP_003355735.1| - 0.039 12.9 0.0 0.095 11.7 0.0 1.7 2 0 0 2 2 2 0 FAD binding domain NAD_binding_8 PF13450.1 gi|282163350|ref|YP_003355735.1| - 0.12 12.4 0.1 0.12 12.4 0.1 2.5 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain DUF3040 PF11239.3 gi|282163351|ref|YP_003355736.1| - 0.056 13.5 1.3 2.3 8.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF3782 PF12644.2 gi|282163351|ref|YP_003355736.1| - 0.36 10.6 2.3 4.3 7.2 1.6 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) DUF318 PF03773.8 gi|282163352|ref|YP_003355737.1| - 3.1e-81 272.7 20.7 3.5e-81 272.5 14.3 1.0 1 0 0 1 1 1 1 Predicted permease SBF PF01758.11 gi|282163353|ref|YP_003355738.1| - 8.6e-61 204.6 17.9 8.6e-61 204.6 12.4 2.2 2 0 0 2 2 2 1 Sodium Bile acid symporter family ABC2_membrane PF01061.19 gi|282163354|ref|YP_003355739.1| - 1.1e-20 73.6 21.3 1.1e-20 73.6 14.8 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|282163354|ref|YP_003355739.1| - 3.5e-11 42.7 26.9 3.5e-11 42.7 18.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|282163354|ref|YP_003355739.1| - 6.3e-06 25.2 18.2 1.4e-05 24.1 12.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|282163355|ref|YP_003355740.1| - 3.6e-27 95.3 0.0 6e-27 94.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163355|ref|YP_003355740.1| - 5.9e-14 52.7 0.0 1.9e-09 37.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|282163355|ref|YP_003355740.1| - 0.00039 20.8 0.1 0.00064 20.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|282163355|ref|YP_003355740.1| - 0.0019 17.4 0.0 0.12 11.5 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|282163355|ref|YP_003355740.1| - 0.0031 17.0 0.0 0.24 10.8 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain AAA_13 PF13166.1 gi|282163355|ref|YP_003355740.1| - 0.0041 15.6 0.0 1.7 7.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|282163355|ref|YP_003355740.1| - 0.0077 16.7 0.0 0.019 15.4 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|282163355|ref|YP_003355740.1| - 0.012 15.1 0.1 0.028 13.9 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|282163355|ref|YP_003355740.1| - 0.018 15.2 0.2 0.28 11.3 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|282163355|ref|YP_003355740.1| - 0.027 14.0 0.1 0.096 12.2 0.0 1.9 3 0 0 3 3 3 0 AAA domain AAA PF00004.24 gi|282163355|ref|YP_003355740.1| - 0.062 13.4 0.4 0.76 9.9 0.3 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|282163355|ref|YP_003355740.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain eRF1_3 PF03465.10 gi|282163355|ref|YP_003355740.1| - 0.12 12.6 0.0 0.4 10.9 0.0 1.9 3 0 0 3 3 3 0 eRF1 domain 3 SRP54 PF00448.17 gi|282163355|ref|YP_003355740.1| - 0.14 11.5 0.1 0.35 10.3 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Cupin_2 PF07883.6 gi|282163356|ref|YP_003355741.1| - 7.5e-11 41.3 0.0 9.7e-11 41.0 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|282163356|ref|YP_003355741.1| - 3.4e-06 26.7 0.0 4e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Auxin_BP PF02041.11 gi|282163356|ref|YP_003355741.1| - 0.04 13.3 0.0 0.044 13.2 0.0 1.1 1 0 0 1 1 1 0 Auxin binding protein Pirin_C PF05726.8 gi|282163356|ref|YP_003355741.1| - 0.087 12.9 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain HTH_5 PF01022.15 gi|282163357|ref|YP_003355742.1| - 7.5e-19 67.1 0.1 1.7e-18 66.0 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|282163357|ref|YP_003355742.1| - 7.5e-11 41.6 0.0 1.9e-10 40.4 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain Methyltransf_31 PF13847.1 gi|282163359|ref|YP_003355744.1| - 1.8e-31 108.7 0.6 7.1e-31 106.8 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282163359|ref|YP_003355744.1| - 1.2e-20 73.7 0.3 7.6e-20 71.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282163359|ref|YP_003355744.1| - 8.4e-17 61.0 0.0 1.3e-16 60.4 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|282163359|ref|YP_003355744.1| - 1.9e-13 50.4 0.0 5.8e-13 48.8 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282163359|ref|YP_003355744.1| - 4.6e-13 49.3 0.5 7.3e-12 45.5 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282163359|ref|YP_003355744.1| - 2.5e-12 47.3 1.2 5.2e-12 46.3 0.0 2.1 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282163359|ref|YP_003355744.1| - 3.5e-10 39.9 1.8 1.8e-08 34.4 0.0 3.1 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282163359|ref|YP_003355744.1| - 6.5e-10 39.3 0.2 2.9e-09 37.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|282163359|ref|YP_003355744.1| - 7.8e-10 38.6 2.8 1.9e-09 37.3 0.0 2.5 2 1 1 3 3 3 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|282163359|ref|YP_003355744.1| - 1.2e-05 24.7 2.0 3.1e-05 23.3 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase small domain PrmA PF06325.8 gi|282163359|ref|YP_003355744.1| - 0.00019 20.6 0.0 0.00019 20.6 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|282163359|ref|YP_003355744.1| - 0.00044 19.9 0.1 0.00078 19.1 0.1 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|282163359|ref|YP_003355744.1| - 0.0013 17.8 0.0 0.0019 17.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|282163359|ref|YP_003355744.1| - 0.0024 16.6 0.0 0.0049 15.6 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.11 gi|282163359|ref|YP_003355744.1| - 0.015 13.6 0.0 0.021 13.2 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase ADH_zinc_N PF00107.21 gi|282163359|ref|YP_003355744.1| - 0.058 12.9 0.3 0.39 10.2 0.1 2.3 1 1 1 2 2 2 0 Zinc-binding dehydrogenase UPF0020 PF01170.13 gi|282163359|ref|YP_003355744.1| - 0.068 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 NNMT_PNMT_TEMT PF01234.12 gi|282163359|ref|YP_003355744.1| - 0.1 11.5 0.1 9.6 5.0 0.0 2.1 1 1 0 2 2 2 0 NNMT/PNMT/TEMT family DOT1 PF08123.8 gi|282163359|ref|YP_003355744.1| - 0.14 11.4 0.1 0.25 10.6 0.0 1.5 1 1 0 1 1 1 0 Histone methylation protein DOT1 DUF4266 PF14086.1 gi|282163359|ref|YP_003355744.1| - 0.44 11.0 7.8 0.47 10.9 2.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4266) PspA_IM30 PF04012.7 gi|282163361|ref|YP_003355746.1| - 1.5e-21 76.8 28.7 1.8e-21 76.5 19.9 1.1 1 0 0 1 1 1 1 PspA/IM30 family UPF0180 PF03698.8 gi|282163361|ref|YP_003355746.1| - 0.014 15.2 1.6 0.047 13.5 1.1 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) AAA_13 PF13166.1 gi|282163361|ref|YP_003355746.1| - 0.015 13.7 15.9 0.02 13.4 11.0 1.2 1 0 0 1 1 1 0 AAA domain Flagellin_C PF00700.16 gi|282163361|ref|YP_003355746.1| - 0.061 13.4 12.6 0.096 12.8 0.1 3.4 2 1 1 3 3 3 0 Bacterial flagellin C-terminal helical region DUF1409 PF07197.7 gi|282163361|ref|YP_003355746.1| - 0.69 10.0 5.5 1.9 8.5 0.2 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF1409) DUF1811 PF08838.5 gi|282163361|ref|YP_003355746.1| - 0.7 9.8 4.4 0.33 10.9 0.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1811) DUF743 PF05332.6 gi|282163361|ref|YP_003355746.1| - 2.6 8.0 8.4 0.53 10.2 0.5 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF743) Baculo_PEP_C PF04513.7 gi|282163361|ref|YP_003355746.1| - 2.8 7.7 14.4 7.4 6.3 1.6 3.4 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus FUSC PF04632.7 gi|282163361|ref|YP_003355746.1| - 2.9 6.2 6.1 3.1 6.1 4.2 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF1664 PF07889.7 gi|282163361|ref|YP_003355746.1| - 3.2 7.5 16.0 0.19 11.5 3.4 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|282163361|ref|YP_003355746.1| - 4.4 5.0 11.0 5.2 4.7 7.6 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF972 PF06156.8 gi|282163361|ref|YP_003355746.1| - 5 7.5 17.3 19 5.6 0.6 3.3 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Spc7 PF08317.6 gi|282163361|ref|YP_003355746.1| - 7.3 5.1 22.4 3.6 6.1 8.5 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein Snf7 PF03357.16 gi|282163361|ref|YP_003355746.1| - 7.3 5.9 27.6 0.089 12.1 5.3 3.2 1 1 2 3 3 3 0 Snf7 DUF4013 PF13197.1 gi|282163362|ref|YP_003355747.1| - 5.1e-19 68.2 27.5 5.1e-19 68.2 19.1 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF677 PF05055.7 gi|282163362|ref|YP_003355747.1| - 1.9 7.0 4.0 1.1 7.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF677) APH PF01636.18 gi|282163363|ref|YP_003355748.1| - 1.3e-15 57.7 0.0 1.9e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.15 gi|282163363|ref|YP_003355748.1| - 6.1e-07 29.2 0.0 9.8e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Choline/ethanolamine kinase RIO1 PF01163.17 gi|282163363|ref|YP_003355748.1| - 0.013 14.8 0.0 0.036 13.4 0.0 1.6 2 0 0 2 2 2 0 RIO1 family HAD_2 PF13419.1 gi|282163364|ref|YP_003355749.1| - 4.1e-24 85.7 0.0 5.7e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|282163364|ref|YP_003355749.1| - 2e-10 40.2 0.0 3.4e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|282163364|ref|YP_003355749.1| - 1.1e-06 29.1 0.0 2.2e-06 28.2 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PhoU PF01895.14 gi|282163365|ref|YP_003355750.1| - 4.4e-29 100.7 7.1 7.5e-15 55.1 0.4 2.1 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|282163365|ref|YP_003355750.1| - 0.026 13.7 1.2 0.12 11.5 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function DUF47 DUF86 PF01934.12 gi|282163365|ref|YP_003355750.1| - 0.082 12.5 0.8 2.9 7.5 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function DUF86 CBS PF00571.23 gi|282163366|ref|YP_003355751.1| - 1e-27 95.6 5.9 4.6e-15 55.1 0.5 2.1 2 0 0 2 2 2 2 CBS domain PTPS PF01242.14 gi|282163367|ref|YP_003355752.1| - 1.6e-27 95.6 0.0 1.8e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF4318 PF14201.1 gi|282163367|ref|YP_003355752.1| - 0.13 12.0 0.1 0.41 10.5 0.0 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4318) Fer4_14 PF13394.1 gi|282163368|ref|YP_003355753.1| - 1.5e-18 66.9 0.2 3.1e-18 65.9 0.1 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|282163368|ref|YP_003355753.1| - 5.3e-10 39.5 0.2 1.3e-09 38.2 0.1 1.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|282163368|ref|YP_003355753.1| - 6.9e-10 39.3 0.1 1.3e-09 38.4 0.1 1.5 1 1 0 1 1 1 1 Radical SAM superfamily DUF366 PF04017.7 gi|282163369|ref|YP_003355754.1| - 2.8e-69 232.0 0.1 3.1e-69 231.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) QueC PF06508.8 gi|282163370|ref|YP_003355755.1| - 4.3e-57 192.7 0.0 4.9e-57 192.5 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|282163370|ref|YP_003355755.1| - 6.9e-05 22.3 1.0 0.1 12.0 0.0 2.5 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.12 gi|282163370|ref|YP_003355755.1| - 0.00046 19.1 0.0 0.00061 18.7 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|282163370|ref|YP_003355755.1| - 0.036 12.6 0.0 0.053 12.0 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase PIN_2 PF10130.4 gi|282163370|ref|YP_003355755.1| - 0.13 12.2 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 PIN domain PSK_trans_fac PF07704.6 gi|282163371|ref|YP_003355756.1| - 0.11 13.1 0.0 0.12 13.0 0.0 1.2 1 0 0 1 1 1 0 Rv0623-like transcription factor Peptidase_M50B PF13398.1 gi|282163372|ref|YP_003355757.1| - 0.0068 15.8 8.2 0.012 15.0 5.7 1.4 1 1 0 1 1 1 1 Peptidase M50B-like EmrE PF13536.1 gi|282163372|ref|YP_003355757.1| - 0.6 10.3 0.0 0.6 10.3 0.0 3.2 2 1 1 4 4 4 0 Multidrug resistance efflux transporter Acetyltransf_1 PF00583.19 gi|282163373|ref|YP_003355758.1| - 2.8e-17 62.5 0.0 4e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|282163373|ref|YP_003355758.1| - 2.6e-11 43.6 0.0 3.5e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|282163373|ref|YP_003355758.1| - 1.1e-10 41.1 0.0 1.6e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|282163373|ref|YP_003355758.1| - 4.3e-09 36.4 0.0 7e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|282163373|ref|YP_003355758.1| - 8.1e-08 32.3 0.1 3e-07 30.4 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|282163373|ref|YP_003355758.1| - 4.9e-07 29.7 0.0 9.5e-07 28.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|282163373|ref|YP_003355758.1| - 2.2e-06 27.5 0.0 3.4e-06 26.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|282163373|ref|YP_003355758.1| - 8.9e-05 22.6 0.0 0.00023 21.3 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|282163373|ref|YP_003355758.1| - 0.0012 18.7 0.1 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|282163373|ref|YP_003355758.1| - 0.0085 15.9 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.1 gi|282163373|ref|YP_003355758.1| - 0.068 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Histidinol_dh PF00815.15 gi|282163374|ref|YP_003355759.1| - 3.6e-160 533.1 2.3 4.1e-160 532.9 1.6 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase tRNA-synt_2 PF00152.15 gi|282163375|ref|YP_003355760.1| - 1.7e-88 296.6 0.1 2.1e-88 296.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|282163375|ref|YP_003355760.1| - 3.5e-14 52.4 0.1 6.8e-14 51.4 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|282163375|ref|YP_003355760.1| - 0.13 11.4 0.1 0.5 9.5 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) Transglut_core PF01841.14 gi|282163376|ref|YP_003355761.1| - 2.2e-05 24.6 0.0 4.2e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF360 PF04020.8 gi|282163377|ref|YP_003355762.1| - 0.18 12.1 9.6 0.22 11.8 6.7 1.1 1 0 0 1 1 1 0 Membrane protein of unknown function DUF3959 PF13105.1 gi|282163377|ref|YP_003355762.1| - 0.22 10.8 1.6 0.22 10.7 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3959) DUF3311 PF11755.3 gi|282163377|ref|YP_003355762.1| - 0.26 10.8 7.7 0.35 10.4 5.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3311) BRI3BP PF14965.1 gi|282163377|ref|YP_003355762.1| - 0.34 10.2 8.5 0.36 10.1 5.9 1.1 1 0 0 1 1 1 0 Negative regulator of p53/TP53 Tic20 PF09685.5 gi|282163377|ref|YP_003355762.1| - 0.57 10.1 7.8 0.68 9.9 5.4 1.1 1 0 0 1 1 1 0 Tic20-like protein NfeD PF01957.13 gi|282163377|ref|YP_003355762.1| - 1.2 9.2 6.0 1.4 9.0 4.1 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Tetraspannin PF00335.15 gi|282163377|ref|YP_003355762.1| - 4.4 6.5 7.8 4.6 6.4 5.4 1.0 1 0 0 1 1 1 0 Tetraspanin family YqhR PF11085.3 gi|282163377|ref|YP_003355762.1| - 6.5 6.2 8.8 8.2 5.9 6.1 1.2 1 0 0 1 1 1 0 Conserved membrane protein YqhR IncA PF04156.9 gi|282163377|ref|YP_003355762.1| - 7.5 6.0 5.6 8 6.0 3.9 1.0 1 0 0 1 1 1 0 IncA protein GXGXG PF01493.14 gi|282163378|ref|YP_003355763.1| - 2.6e-35 121.2 16.8 3.1e-35 121.0 11.6 1.1 1 0 0 1 1 1 1 GXGXG motif Glu_synthase PF01645.12 gi|282163379|ref|YP_003355764.1| - 4.2e-135 450.3 0.0 4.2e-135 450.3 0.0 1.4 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.9 gi|282163379|ref|YP_003355764.1| - 1.8e-11 43.8 0.1 2.8e-06 26.7 0.0 2.4 2 0 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.13 gi|282163379|ref|YP_003355764.1| - 5.9e-10 38.5 11.1 2.1e-09 36.7 2.0 2.8 4 0 0 4 4 4 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|282163379|ref|YP_003355764.1| - 3.8e-08 32.5 3.9 9.1e-07 28.0 4.2 2.1 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4 PF00037.22 gi|282163379|ref|YP_003355764.1| - 4.6e-06 25.9 12.6 2.8e-05 23.5 1.9 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain His_biosynth PF00977.16 gi|282163379|ref|YP_003355764.1| - 2.6e-05 23.6 0.0 6e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_21 PF14697.1 gi|282163379|ref|YP_003355764.1| - 3e-05 23.7 13.2 3e-05 23.7 9.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282163379|ref|YP_003355764.1| - 4.7e-05 23.1 20.3 0.0034 17.1 2.0 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282163379|ref|YP_003355764.1| - 0.0001 22.5 20.9 0.00028 21.1 10.9 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282163379|ref|YP_003355764.1| - 0.00059 20.5 15.1 0.0073 17.0 0.3 3.4 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|282163379|ref|YP_003355764.1| - 0.0021 18.3 11.2 0.2 12.0 0.1 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282163379|ref|YP_003355764.1| - 0.0027 17.9 16.0 0.0027 17.9 11.1 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain NMO PF03060.10 gi|282163379|ref|YP_003355764.1| - 0.004 16.3 4.2 0.0065 15.6 2.9 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase PcrB PF01884.12 gi|282163379|ref|YP_003355764.1| - 0.0063 15.7 3.9 0.013 14.7 1.3 2.2 1 1 1 2 2 2 1 PcrB family Fer4_6 PF12837.2 gi|282163379|ref|YP_003355764.1| - 0.0074 16.1 2.1 0.0074 16.1 1.5 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain ThiG PF05690.9 gi|282163379|ref|YP_003355764.1| - 0.0088 15.1 0.6 0.017 14.2 0.4 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Fer4_2 PF12797.2 gi|282163379|ref|YP_003355764.1| - 0.011 15.5 4.0 0.011 15.5 2.8 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|282163379|ref|YP_003355764.1| - 0.019 14.8 6.9 0.019 14.8 4.8 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain DHO_dh PF01180.16 gi|282163379|ref|YP_003355764.1| - 0.036 13.0 1.2 0.1 11.5 0.4 1.9 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Fer4_8 PF13183.1 gi|282163379|ref|YP_003355764.1| - 0.045 13.7 19.4 0.31 11.0 2.1 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain DeoC PF01791.4 gi|282163379|ref|YP_003355764.1| - 0.053 12.7 2.3 0.089 12.0 1.6 1.2 1 0 0 1 1 1 0 DeoC/LacD family aldolase DUF865 PF05906.6 gi|282163379|ref|YP_003355764.1| - 0.11 12.1 0.1 0.26 10.8 0.1 1.6 1 0 0 1 1 1 0 Herpesvirus-7 repeat of unknown function (DUF865) Fer4_4 PF12800.2 gi|282163379|ref|YP_003355764.1| - 0.69 10.4 22.2 0.38 11.2 1.4 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain GATase_2 PF00310.16 gi|282163380|ref|YP_003355765.1| - 1.1e-22 80.2 0.0 1.4e-22 79.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|282163380|ref|YP_003355765.1| - 5.7e-12 45.7 0.0 1.4e-10 41.2 0.0 2.8 2 1 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|282163380|ref|YP_003355765.1| - 9.3e-07 28.6 0.0 2e-05 24.2 0.0 2.3 1 1 0 1 1 1 1 Glutamine amidotransferase domain Trp_leader1 PF08055.6 gi|282163380|ref|YP_003355765.1| - 9.4 5.8 6.4 24 4.5 1.8 2.4 2 0 0 2 2 2 0 Tryptophan leader peptide DNA_topoisoIV PF00521.15 gi|282163381|ref|YP_003355766.1| - 5e-159 529.6 0.2 1e-158 528.7 0.0 1.5 2 0 0 2 2 2 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|282163381|ref|YP_003355766.1| - 1e-62 207.2 13.6 2.4e-15 55.5 0.2 6.5 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller LigA PF07746.6 gi|282163381|ref|YP_003355766.1| - 0.068 13.1 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit DNA_gyraseB PF00204.20 gi|282163382|ref|YP_003355767.1| - 5e-63 211.4 0.4 9.1e-63 210.5 0.3 1.4 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|282163382|ref|YP_003355767.1| - 1.4e-29 101.6 0.2 2.7e-29 100.6 0.2 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|282163382|ref|YP_003355767.1| - 4.8e-25 87.4 0.0 1.4e-24 85.9 0.0 1.8 2 0 0 2 2 2 1 Toprim domain HATPase_c PF02518.21 gi|282163382|ref|YP_003355767.1| - 1.2e-18 66.8 0.1 2.2e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|282163382|ref|YP_003355767.1| - 6.8e-06 25.7 0.0 1.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S4 PF01479.20 gi|282163383|ref|YP_003355768.1| - 2.4e-14 52.4 0.5 6.1e-14 51.1 0.1 1.9 2 0 0 2 2 2 1 S4 domain Methyltransf_18 PF12847.2 gi|282163383|ref|YP_003355768.1| - 1.2e-08 35.5 0.0 1.8e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282163383|ref|YP_003355768.1| - 3.8e-07 29.9 0.0 5.1e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163383|ref|YP_003355768.1| - 4.4e-07 29.5 0.0 5.6e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|282163383|ref|YP_003355768.1| - 6.9e-06 26.1 0.0 1.4e-05 25.1 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase S4_2 PF13275.1 gi|282163383|ref|YP_003355768.1| - 2.3e-05 23.8 0.1 5.6e-05 22.6 0.0 1.7 2 0 0 2 2 2 1 S4 domain Methyltransf_26 PF13659.1 gi|282163383|ref|YP_003355768.1| - 0.00047 20.1 0.0 0.00095 19.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282163383|ref|YP_003355768.1| - 0.002 18.4 0.0 0.0029 17.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|282163383|ref|YP_003355768.1| - 0.0039 16.7 0.0 0.01 15.3 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Spermine_synth PF01564.12 gi|282163383|ref|YP_003355768.1| - 0.015 14.2 0.0 0.026 13.4 0.0 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase Fibrillarin PF01269.12 gi|282163383|ref|YP_003355768.1| - 0.025 13.4 0.0 0.035 13.0 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_12 PF08242.7 gi|282163383|ref|YP_003355768.1| - 0.026 14.9 0.0 0.041 14.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N_2 PF13602.1 gi|282163383|ref|YP_003355768.1| - 0.089 13.6 0.1 0.57 11.0 0.0 2.2 2 1 1 3 3 3 0 Zinc-binding dehydrogenase DUF362 PF04015.7 gi|282163385|ref|YP_003355770.1| - 2.4e-52 177.4 0.0 3.3e-52 176.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Inhibitor_I42 PF09394.5 gi|282163386|ref|YP_003355771.1| - 1.1e-27 96.1 0.9 1.3e-27 95.9 0.6 1.1 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 Fer4 PF00037.22 gi|282163387|ref|YP_003355772.1| - 1.3e-13 49.8 12.0 5.5e-08 32.0 1.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282163387|ref|YP_003355772.1| - 5.1e-12 45.9 26.2 4.1e-08 33.4 10.1 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282163387|ref|YP_003355772.1| - 5.5e-10 38.6 10.0 8.5e-07 28.5 1.0 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282163387|ref|YP_003355772.1| - 2e-08 33.9 13.1 2e-08 33.9 9.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282163387|ref|YP_003355772.1| - 2.1e-08 34.3 12.9 2.1e-08 34.3 8.9 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282163387|ref|YP_003355772.1| - 5.3e-08 32.3 12.0 8.3e-06 25.4 1.8 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|282163387|ref|YP_003355772.1| - 2.8e-06 27.2 18.0 2.2e-05 24.3 10.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282163387|ref|YP_003355772.1| - 2.9e-06 27.9 14.2 0.00098 19.8 0.5 2.4 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|282163387|ref|YP_003355772.1| - 1.4e-05 24.8 20.9 0.00048 19.9 2.5 2.6 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282163387|ref|YP_003355772.1| - 3e-05 24.4 14.1 0.00048 20.6 1.2 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|282163387|ref|YP_003355772.1| - 4.5e-05 23.7 14.7 0.0024 18.2 10.2 3.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|282163387|ref|YP_003355772.1| - 0.00019 21.7 14.3 0.009 16.3 2.3 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282163387|ref|YP_003355772.1| - 0.00033 21.0 14.4 0.0061 16.9 2.6 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282163387|ref|YP_003355772.1| - 0.00066 19.8 2.1 0.00066 19.8 1.5 3.2 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_19 PF06902.6 gi|282163387|ref|YP_003355772.1| - 0.0039 16.9 3.8 0.0061 16.3 2.6 1.2 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_3 PF12798.2 gi|282163387|ref|YP_003355772.1| - 0.033 14.7 7.1 0.033 14.7 4.9 3.6 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|282163387|ref|YP_003355772.1| - 0.095 12.6 14.0 0.16 11.8 9.7 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Viral_protease PF08715.5 gi|282163387|ref|YP_003355772.1| - 0.23 10.5 2.8 0.28 10.2 2.0 1.1 1 0 0 1 1 1 0 Papain like viral protease CdhD PF03599.11 gi|282163388|ref|YP_003355773.1| - 2e-16 59.5 0.0 2.4e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit Antitoxin-MazE PF04014.13 gi|282163389|ref|YP_003355774.1| - 2.5e-06 27.0 0.1 3.4e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE eIF-1a PF01176.14 gi|282163389|ref|YP_003355774.1| - 0.024 14.0 0.1 0.029 13.8 0.1 1.2 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Antitoxin-MazE PF04014.13 gi|282163391|ref|YP_003355776.1| - 2.1e-12 46.4 0.3 2.1e-12 46.4 0.2 1.9 2 0 0 2 2 2 1 Antidote-toxin recognition MazE UPF0113 PF03657.8 gi|282163391|ref|YP_003355776.1| - 0.018 14.7 0.0 0.023 14.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0113) UTRA PF07702.8 gi|282163391|ref|YP_003355776.1| - 0.061 12.9 0.0 0.061 12.9 0.0 1.1 1 0 0 1 1 1 0 UTRA domain THUMP PF02926.12 gi|282163392|ref|YP_003355777.1| - 1.4e-07 31.4 0.0 2.9e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|282163392|ref|YP_003355777.1| - 0.0012 18.8 3.5 0.0012 18.8 2.4 2.7 3 0 0 3 3 3 1 DnaJ central domain Stc1 PF12898.2 gi|282163392|ref|YP_003355777.1| - 0.11 12.5 0.8 0.3 11.1 0.6 1.7 1 0 0 1 1 1 0 Stc1 domain Ribosomal_L21e PF01157.13 gi|282163393|ref|YP_003355778.1| - 6.9e-30 102.7 0.8 7.7e-30 102.6 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|282163394|ref|YP_003355779.1| - 7.8e-15 54.9 1.4 9.4e-15 54.6 1.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 AviRa PF11599.3 gi|282163394|ref|YP_003355779.1| - 0.015 14.3 0.2 0.018 14.0 0.2 1.1 1 0 0 1 1 1 0 RRNA methyltransferase AviRa IL28A PF15177.1 gi|282163394|ref|YP_003355779.1| - 0.13 11.7 0.7 0.47 9.9 0.1 1.8 1 1 1 2 2 2 0 Interleukin-28A DUF655 PF04919.7 gi|282163395|ref|YP_003355780.1| - 9.6e-69 230.6 2.2 1.1e-68 230.5 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|282163395|ref|YP_003355780.1| - 0.00044 20.1 0.0 0.0012 18.7 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|282163395|ref|YP_003355780.1| - 0.00075 19.4 0.0 0.0022 18.0 0.0 1.8 1 1 1 2 2 2 1 Helix-hairpin-helix motif RrnaAD PF00398.15 gi|282163396|ref|YP_003355781.1| - 2.3e-56 190.7 0.0 2.9e-56 190.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|282163396|ref|YP_003355781.1| - 4.4e-09 36.4 0.0 6.9e-09 35.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163396|ref|YP_003355781.1| - 1.1e-08 34.7 0.0 1.6e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282163396|ref|YP_003355781.1| - 1.5e-07 31.9 0.0 2.9e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282163396|ref|YP_003355781.1| - 1.3e-06 28.8 0.0 2.5e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282163396|ref|YP_003355781.1| - 7.7e-05 22.4 0.0 0.00011 21.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282163396|ref|YP_003355781.1| - 0.00011 22.4 0.0 0.00022 21.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|282163396|ref|YP_003355781.1| - 0.00044 19.6 0.0 0.00064 19.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain DREV PF05219.7 gi|282163396|ref|YP_003355781.1| - 0.0029 16.5 0.0 0.0051 15.7 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase Met_10 PF02475.11 gi|282163396|ref|YP_003355781.1| - 0.0054 16.3 0.0 0.0081 15.7 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.7 gi|282163396|ref|YP_003355781.1| - 0.024 15.1 0.0 0.042 14.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF3419 PF11899.3 gi|282163396|ref|YP_003355781.1| - 0.05 12.3 0.0 0.078 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) PCMT PF01135.14 gi|282163396|ref|YP_003355781.1| - 0.063 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|282163396|ref|YP_003355781.1| - 0.073 12.1 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase MetW PF07021.7 gi|282163396|ref|YP_003355781.1| - 0.15 11.4 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.9 gi|282163397|ref|YP_003355782.1| - 9.6e-14 51.1 0.0 1.3e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|282163397|ref|YP_003355782.1| - 2.5e-13 50.0 0.0 4.8e-13 49.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|282163397|ref|YP_003355782.1| - 2.9e-07 29.9 0.2 6.9e-07 28.6 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|282163397|ref|YP_003355782.1| - 5.1e-07 30.2 0.0 1.1e-06 29.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282163397|ref|YP_003355782.1| - 5.5e-07 29.9 0.0 0.0033 17.8 0.0 2.7 3 0 0 3 3 3 2 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163397|ref|YP_003355782.1| - 7.4e-07 28.8 0.0 1.2e-06 28.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282163397|ref|YP_003355782.1| - 2.8e-06 27.1 0.0 2.4e-05 24.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282163397|ref|YP_003355782.1| - 0.0005 20.4 0.0 0.012 16.0 0.0 2.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|282163397|ref|YP_003355782.1| - 0.0056 16.1 0.0 0.0079 15.6 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase RrnaAD PF00398.15 gi|282163397|ref|YP_003355782.1| - 0.01 14.8 0.0 0.015 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|282163397|ref|YP_003355782.1| - 0.022 14.1 0.0 0.058 12.7 0.0 1.6 2 0 0 2 2 2 0 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|282163397|ref|YP_003355782.1| - 0.028 13.9 0.0 0.07 12.6 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.7 gi|282163397|ref|YP_003355782.1| - 0.035 12.9 0.0 0.066 12.0 0.0 1.4 2 0 0 2 2 2 0 DREV methyltransferase Methyltransf_25 PF13649.1 gi|282163397|ref|YP_003355782.1| - 0.15 12.4 0.0 0.57 10.5 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Carb_kinase PF01256.12 gi|282163398|ref|YP_003355783.1| - 1.2e-48 165.5 0.2 1.2e-48 165.5 0.1 1.5 2 0 0 2 2 2 1 Carbohydrate kinase YjeF_N PF03853.10 gi|282163398|ref|YP_003355783.1| - 9.9e-44 148.9 0.0 2.4e-43 147.6 0.0 1.6 1 0 0 1 1 1 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.7 gi|282163398|ref|YP_003355783.1| - 0.00027 20.2 0.0 0.00055 19.2 0.0 1.5 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase HK PF02110.10 gi|282163398|ref|YP_003355783.1| - 0.00083 18.6 0.1 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family PfkB PF00294.19 gi|282163398|ref|YP_003355783.1| - 0.0084 15.2 0.3 0.0084 15.2 0.2 1.8 2 0 0 2 2 2 1 pfkB family carbohydrate kinase MoaC PF01967.16 gi|282163399|ref|YP_003355784.1| - 3.5e-49 165.9 6.5 4.1e-49 165.7 4.5 1.0 1 0 0 1 1 1 1 MoaC family Tissue_fac PF01108.12 gi|282163399|ref|YP_003355784.1| - 0.12 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Tissue factor SpoU_methylase PF00588.14 gi|282163400|ref|YP_003355785.1| - 1.4e-31 109.2 0.0 1.8e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|282163400|ref|YP_003355785.1| - 0.00046 19.7 0.0 0.0012 18.3 0.0 1.6 1 1 1 2 2 2 1 SAM-dependent RNA methyltransferase OTCace PF00185.19 gi|282163400|ref|YP_003355785.1| - 0.073 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Metallophos_2 PF12850.2 gi|282163401|ref|YP_003355786.1| - 9.6e-18 64.4 0.0 1.4e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|282163401|ref|YP_003355786.1| - 4e-14 52.4 0.0 5.2e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|282163401|ref|YP_003355786.1| - 2.2e-08 33.5 0.8 8.5e-08 31.6 0.6 2.1 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily UPF0047 PF01894.12 gi|282163402|ref|YP_003355787.1| - 1.7e-36 124.5 0.0 2e-36 124.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Desulfoferrodox PF01880.13 gi|282163403|ref|YP_003355788.1| - 1.3e-27 95.9 0.0 1.6e-27 95.6 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin CarboxypepD_reg PF13620.1 gi|282163404|ref|YP_003355789.1| - 3.9e-09 36.4 0.7 2.8e-08 33.7 0.2 2.4 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|282163404|ref|YP_003355789.1| - 2e-05 24.4 0.2 0.28 11.1 0.1 2.6 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) Dioxygenase_C PF00775.16 gi|282163404|ref|YP_003355789.1| - 0.00071 18.8 0.4 0.0029 16.9 0.2 1.8 2 0 0 2 2 2 1 Dioxygenase phage_tail_N PF08400.5 gi|282163404|ref|YP_003355789.1| - 0.051 13.2 0.3 0.11 12.2 0.2 1.5 1 0 0 1 1 1 0 Prophage tail fibre N-terminal CbiM PF01891.11 gi|282163405|ref|YP_003355790.1| - 0.05 13.1 1.5 0.063 12.8 1.0 1.1 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region tRNA-synt_1g PF09334.6 gi|282163406|ref|YP_003355791.1| - 2.7e-139 464.1 0.0 3.4e-139 463.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|282163406|ref|YP_003355791.1| - 6.4e-26 90.0 0.7 1.5e-25 88.8 0.5 1.7 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|282163406|ref|YP_003355791.1| - 1.2e-21 76.3 0.2 7.8e-11 40.6 0.1 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|282163406|ref|YP_003355791.1| - 2.9e-11 43.0 0.0 1.8e-06 27.3 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|282163406|ref|YP_003355791.1| - 1.1e-10 41.4 0.2 2.5e-10 40.3 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1d PF00750.14 gi|282163406|ref|YP_003355791.1| - 7.6e-05 21.6 0.7 0.31 9.7 0.1 2.5 1 1 1 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|282163406|ref|YP_003355791.1| - 0.00014 20.6 0.0 0.053 12.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) DZR PF12773.2 gi|282163406|ref|YP_003355791.1| - 0.62 9.9 6.3 0.45 10.3 2.0 2.2 1 1 1 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|282163406|ref|YP_003355791.1| - 7.1 5.9 8.5 9.1 5.6 3.4 2.6 2 1 0 2 2 2 0 zinc-ribbon domain Na_Ala_symp PF01235.12 gi|282163407|ref|YP_003355792.1| - 1.3e-132 442.3 28.0 3.1e-132 441.0 19.4 1.5 1 1 0 1 1 1 1 Sodium:alanine symporter family MFS_1 PF07690.11 gi|282163408|ref|YP_003355793.1| - 4.6e-42 143.9 47.8 2.5e-23 82.3 14.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|282163408|ref|YP_003355793.1| - 7.8e-11 40.7 11.4 4.9e-09 34.8 0.9 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector Sugar_tr PF00083.19 gi|282163408|ref|YP_003355793.1| - 0.00012 20.7 32.1 0.048 12.2 6.6 3.3 1 1 1 2 2 2 2 Sugar (and other) transporter LacY_symp PF01306.14 gi|282163408|ref|YP_003355793.1| - 0.0021 16.6 6.1 0.0021 16.6 4.3 2.3 2 0 0 2 2 2 1 LacY proton/sugar symporter Radical_SAM PF04055.16 gi|282163409|ref|YP_003355794.1| - 6.6e-21 75.1 0.0 9.8e-21 74.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|282163409|ref|YP_003355794.1| - 8.6e-07 29.1 0.6 1.6e-06 28.3 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|282163409|ref|YP_003355794.1| - 2.2e-06 27.7 0.0 4.2e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|282163409|ref|YP_003355794.1| - 4.7e-05 23.6 1.9 4.7e-05 23.6 1.3 2.4 2 1 1 3 3 3 1 Iron-sulfur cluster-binding domain Plug_translocon PF10559.4 gi|282163410|ref|YP_003355795.1| - 0.11 12.0 0.1 2.2 7.8 0.1 2.3 2 0 0 2 2 2 0 Plug domain of Sec61p DUF4229 PF14012.1 gi|282163410|ref|YP_003355795.1| - 0.21 11.5 4.0 0.33 10.8 2.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4229) Gram_pos_anchor PF00746.16 gi|282163410|ref|YP_003355795.1| - 0.61 9.9 2.8 1.3 8.9 1.9 1.5 1 0 0 1 1 1 0 Gram positive anchor Translin PF01997.11 gi|282163412|ref|YP_003355797.1| - 1.1e-32 113.2 0.0 1.4e-32 112.9 0.0 1.1 1 0 0 1 1 1 1 Translin family Desulfoferrodox PF01880.13 gi|282163413|ref|YP_003355798.1| - 0.0053 16.9 0.3 0.019 15.2 0.0 2.0 2 0 0 2 2 2 1 Desulfoferrodoxin Wyosine_form PF08608.7 gi|282163414|ref|YP_003355799.1| - 2.7e-22 78.6 0.1 6.6e-22 77.3 0.0 1.7 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.16 gi|282163414|ref|YP_003355799.1| - 8.8e-21 74.7 1.1 4.6e-20 72.4 0.3 2.2 2 1 0 2 2 2 1 Radical SAM superfamily HAD_2 PF13419.1 gi|282163414|ref|YP_003355799.1| - 0.002 18.3 0.0 0.0055 16.9 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|282163414|ref|YP_003355799.1| - 0.017 15.0 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF2298 PF10060.4 gi|282163415|ref|YP_003355800.1| - 7.5e-21 74.5 43.0 7.5e-21 74.5 29.8 2.4 2 0 0 2 2 2 1 Uncharacterized membrane protein (DUF2298) H2TH PF06831.9 gi|282163419|ref|YP_003355804.1| - 2.6e-18 65.5 0.0 4.1e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain Fapy_DNA_glyco PF01149.19 gi|282163419|ref|YP_003355804.1| - 5e-16 59.0 0.0 7.8e-16 58.4 0.0 1.3 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase N-terminal domain zf-FPG_IleRS PF06827.9 gi|282163419|ref|YP_003355804.1| - 2.8e-09 36.3 2.4 5.6e-09 35.4 1.7 1.5 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS FbpA PF05833.6 gi|282163419|ref|YP_003355804.1| - 0.0044 15.6 0.0 0.0064 15.0 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) zf-TFIIB PF13453.1 gi|282163419|ref|YP_003355804.1| - 0.032 13.4 2.2 0.055 12.6 1.5 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc-ribbons_6 PF07191.7 gi|282163419|ref|YP_003355804.1| - 0.033 13.9 0.0 0.051 13.3 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbons UPF0547 PF10571.4 gi|282163419|ref|YP_003355804.1| - 0.098 12.3 3.4 0.16 11.7 2.4 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|282163419|ref|YP_003355804.1| - 0.11 12.3 1.3 0.17 11.7 0.9 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|282163419|ref|YP_003355804.1| - 0.12 12.1 1.0 0.32 10.7 0.1 2.0 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF4428 PF14471.1 gi|282163419|ref|YP_003355804.1| - 0.14 11.8 0.7 0.32 10.7 0.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) OrfB_Zn_ribbon PF07282.6 gi|282163419|ref|YP_003355804.1| - 0.15 11.7 1.5 0.28 10.8 1.0 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RNHCP PF12647.2 gi|282163419|ref|YP_003355804.1| - 0.19 11.5 0.7 0.32 10.8 0.5 1.4 1 0 0 1 1 1 0 RNHCP domain Lar_restr_allev PF14354.1 gi|282163419|ref|YP_003355804.1| - 0.35 11.2 1.8 0.62 10.4 1.3 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar RCC1_2 PF13540.1 gi|282163420|ref|YP_003355805.1| - 2.5e-37 125.6 29.5 2.7e-09 36.4 0.1 8.1 7 0 0 7 7 7 5 Regulator of chromosome condensation (RCC1) repeat RCC1 PF00415.13 gi|282163420|ref|YP_003355805.1| - 1.2e-35 121.4 22.1 2.4e-08 34.0 0.1 6.8 5 1 0 5 5 5 5 Regulator of chromosome condensation (RCC1) repeat PQQ PF01011.16 gi|282163420|ref|YP_003355805.1| - 8.1e-10 37.7 4.3 0.02 14.3 0.0 5.7 6 0 0 6 6 5 3 PQQ enzyme repeat HTH_24 PF13412.1 gi|282163420|ref|YP_003355805.1| - 9.4e-09 34.5 0.0 1.7e-06 27.2 0.0 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|282163420|ref|YP_003355805.1| - 9.8e-09 34.7 0.0 0.00011 21.8 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|282163420|ref|YP_003355805.1| - 4.5e-06 26.2 0.0 1.2e-05 24.9 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|282163420|ref|YP_003355805.1| - 8.1e-05 22.3 0.0 0.0087 15.8 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|282163420|ref|YP_003355805.1| - 0.0012 18.3 0.2 0.0029 17.0 0.0 1.8 2 0 0 2 2 2 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|282163420|ref|YP_003355805.1| - 0.0039 16.8 0.0 0.011 15.4 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_Mga PF08280.6 gi|282163420|ref|YP_003355805.1| - 0.0068 16.1 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain FeoC PF09012.5 gi|282163420|ref|YP_003355805.1| - 0.0097 15.5 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_IclR PF09339.5 gi|282163420|ref|YP_003355805.1| - 0.013 15.0 0.0 0.04 13.5 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|282163420|ref|YP_003355805.1| - 0.018 15.1 0.1 0.13 12.3 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|282163420|ref|YP_003355805.1| - 0.031 14.3 0.0 0.065 13.3 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor MerR_1 PF13411.1 gi|282163420|ref|YP_003355805.1| - 0.055 13.2 0.1 1.9 8.3 0.0 2.5 2 0 0 2 2 2 0 MerR HTH family regulatory protein HTH_27 PF13463.1 gi|282163420|ref|YP_003355805.1| - 0.084 13.2 0.0 0.22 11.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|282163420|ref|YP_003355805.1| - 0.088 12.4 0.1 0.29 10.8 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_DeoR PF08220.7 gi|282163420|ref|YP_003355805.1| - 0.18 11.3 0.0 0.38 10.3 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PAS PF00989.19 gi|282163421|ref|YP_003355806.1| - 2.6e-29 101.2 0.0 1.1e-12 47.7 0.0 4.0 4 1 0 4 4 4 2 PAS fold PAS_9 PF13426.1 gi|282163421|ref|YP_003355806.1| - 4.3e-27 94.5 0.1 8.7e-13 48.5 0.0 4.1 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.5 gi|282163421|ref|YP_003355806.1| - 1.2e-26 92.9 0.0 2.5e-14 53.2 0.0 4.0 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|282163421|ref|YP_003355806.1| - 9.9e-19 67.1 0.0 1.9e-18 66.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|282163421|ref|YP_003355806.1| - 2.3e-11 43.6 0.0 1.5e-05 25.0 0.0 4.5 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.1 gi|282163421|ref|YP_003355806.1| - 3.3e-10 39.4 0.0 1.2e-05 24.9 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.1 gi|282163421|ref|YP_003355806.1| - 1.2e-05 25.1 0.0 2.2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282163421|ref|YP_003355806.1| - 0.0051 16.4 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|282163421|ref|YP_003355806.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|282163421|ref|YP_003355806.1| - 0.099 12.6 1.4 0.2 11.6 0.1 2.2 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Rhodanese PF00581.15 gi|282163422|ref|YP_003355807.1| - 7e-16 58.5 0.0 9e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain EGL-1 PF11430.3 gi|282163422|ref|YP_003355807.1| - 0.15 11.6 0.8 0.33 10.5 0.6 1.5 1 0 0 1 1 1 0 Programmed cell death activator EGL-1 PAS_3 PF08447.6 gi|282163423|ref|YP_003355808.1| - 3.2e-71 235.4 8.5 2.9e-23 81.7 0.1 5.6 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.1 gi|282163423|ref|YP_003355808.1| - 1.1e-53 179.9 0.0 3.6e-12 46.5 0.0 5.5 5 0 0 5 5 5 5 PAS domain PAS_4 PF08448.5 gi|282163423|ref|YP_003355808.1| - 4.7e-34 116.7 0.2 5.8e-10 39.1 0.0 5.3 5 0 0 5 5 5 5 PAS fold PAS PF00989.19 gi|282163423|ref|YP_003355808.1| - 5.4e-31 106.6 0.0 2.2e-07 30.6 0.0 6.2 5 1 0 5 5 5 5 PAS fold HATPase_c PF02518.21 gi|282163423|ref|YP_003355808.1| - 1.8e-20 72.6 0.1 9.2e-20 70.4 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|282163423|ref|YP_003355808.1| - 8.5e-19 66.6 0.0 7.4e-07 28.8 0.0 4.2 4 0 0 4 4 4 3 PAS domain HATPase_c_2 PF13581.1 gi|282163423|ref|YP_003355808.1| - 3.2e-05 23.7 0.1 0.00012 21.8 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282163423|ref|YP_003355808.1| - 0.0033 17.1 0.0 0.0076 15.9 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|282163423|ref|YP_003355808.1| - 0.013 15.1 0.1 0.033 13.8 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MEKHLA PF08670.6 gi|282163423|ref|YP_003355808.1| - 0.1 12.1 0.0 0.28 10.6 0.0 1.7 1 0 0 1 1 1 0 MEKHLA domain Abhydrolase_6 PF12697.2 gi|282163424|ref|YP_003355809.1| - 1.1e-20 74.5 0.0 1.3e-20 74.2 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|282163424|ref|YP_003355809.1| - 3.4e-11 43.1 0.0 1.8e-09 37.4 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|282163424|ref|YP_003355809.1| - 2.7e-08 33.6 0.0 6.2e-08 32.5 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|282163424|ref|YP_003355809.1| - 0.015 14.5 0.0 0.43 9.7 0.0 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase family Abhydrolase_3 PF07859.8 gi|282163424|ref|YP_003355809.1| - 0.015 14.9 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|282163424|ref|YP_003355809.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain HxlR PF01638.12 gi|282163425|ref|YP_003355810.1| - 1.7e-31 107.6 0.3 2.3e-31 107.2 0.2 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_12 PF08461.5 gi|282163425|ref|YP_003355810.1| - 0.0019 17.8 0.1 0.003 17.2 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain PadR PF03551.9 gi|282163425|ref|YP_003355810.1| - 0.0031 17.2 0.1 0.0046 16.6 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|282163425|ref|YP_003355810.1| - 0.0042 16.8 0.0 0.0081 15.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|282163425|ref|YP_003355810.1| - 0.015 14.9 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|282163425|ref|YP_003355810.1| - 0.017 15.4 0.1 0.026 14.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|282163425|ref|YP_003355810.1| - 0.038 13.6 0.0 0.19 11.4 0.0 2.0 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|282163425|ref|YP_003355810.1| - 0.067 12.8 0.1 0.21 11.3 0.1 1.7 1 1 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.7 gi|282163425|ref|YP_003355810.1| - 0.11 12.3 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Tautomerase PF01361.16 gi|282163426|ref|YP_003355811.1| - 2.8e-10 39.6 0.0 2.9e-10 39.5 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|282163426|ref|YP_003355811.1| - 0.00067 19.6 0.0 0.00072 19.5 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Pyridox_oxidase PF01243.15 gi|282163427|ref|YP_003355812.1| - 5.6e-16 58.3 0.0 7.1e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DIM PF08194.7 gi|282163428|ref|YP_003355813.1| - 0.17 11.8 1.4 0.25 11.3 1.0 1.2 1 0 0 1 1 1 0 DIM protein Lamprin PF06403.6 gi|282163428|ref|YP_003355813.1| - 4.1 7.1 33.0 0.25 11.0 15.8 2.6 1 1 1 2 2 2 0 Lamprin Caveolin PF01146.12 gi|282163429|ref|YP_003355814.1| - 0.089 12.3 6.2 0.045 13.3 2.8 1.5 1 1 0 1 1 1 0 Caveolin Peptidase_U4 PF03419.8 gi|282163429|ref|YP_003355814.1| - 0.093 11.7 7.2 0.11 11.5 5.0 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF3671 PF12420.3 gi|282163429|ref|YP_003355814.1| - 1.5 8.8 15.3 1.3 9.0 0.6 2.6 2 1 1 3 3 3 0 Protein of unknown function 7TMR-DISM_7TM PF07695.6 gi|282163429|ref|YP_003355814.1| - 5.6 6.5 19.2 1 9.0 10.2 1.7 1 1 0 1 1 1 0 7TM diverse intracellular signalling Abi PF02517.11 gi|282163430|ref|YP_003355815.1| - 2.3e-16 59.7 2.8 2.9e-16 59.3 1.9 1.1 1 0 0 1 1 1 1 CAAX protease self-immunity Gate PF07670.9 gi|282163430|ref|YP_003355815.1| - 0.25 11.2 4.8 2.1 8.2 1.1 2.2 1 1 0 2 2 2 0 Nucleoside recognition PetM PF08041.6 gi|282163430|ref|YP_003355815.1| - 3.8 7.0 5.7 12 5.5 3.9 1.8 1 0 0 1 1 1 0 PetM family of cytochrome b6f complex subunit 7 PD40 PF07676.7 gi|282163431|ref|YP_003355816.1| - 7.4e-11 41.4 0.1 1.9e-10 40.1 0.1 1.7 1 0 0 1 1 1 1 WD40-like Beta Propeller Repeat Laminin_G_3 PF13385.1 gi|282163431|ref|YP_003355816.1| - 0.012 15.8 3.0 0.015 15.5 1.6 1.6 1 1 1 2 2 2 0 Concanavalin A-like lectin/glucanases superfamily DPPIV_N PF00930.16 gi|282163431|ref|YP_003355816.1| - 0.063 11.8 0.0 0.1 11.1 0.0 1.3 1 0 0 1 1 1 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Cloacin_immun PF03513.9 gi|282163431|ref|YP_003355816.1| - 0.098 12.7 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Cloacin immunity protein PD40 PF07676.7 gi|282163432|ref|YP_003355817.1| - 1.2e-08 34.4 0.4 4.3e-07 29.4 0.1 2.3 2 0 0 2 2 2 1 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|282163432|ref|YP_003355817.1| - 3.4e-07 29.1 0.1 3.7e-07 29.0 0.1 1.0 1 0 0 1 1 1 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region BNR PF02012.15 gi|282163432|ref|YP_003355817.1| - 0.053 13.3 0.9 0.38 10.7 0.0 2.8 3 0 0 3 3 3 0 BNR/Asp-box repeat Choline_sulf_C PF12411.3 gi|282163432|ref|YP_003355817.1| - 0.11 12.3 0.5 0.32 10.8 0.1 1.9 1 1 1 2 2 2 0 Choline sulfatase enzyme C terminal Hexapep PF00132.19 gi|282163433|ref|YP_003355818.1| - 1.9e-27 93.5 15.1 7.9e-08 31.4 0.2 5.2 3 1 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|282163433|ref|YP_003355818.1| - 1.4e-18 66.0 17.8 3.5e-07 29.6 0.7 5.5 5 0 0 5 5 5 5 Hexapeptide repeat of succinyl-transferase DUF3686 PF12458.3 gi|282163433|ref|YP_003355818.1| - 0.08 11.1 0.1 0.11 10.7 0.1 1.1 1 0 0 1 1 1 0 ATPase involved in DNA repair DegT_DnrJ_EryC1 PF01041.12 gi|282163434|ref|YP_003355819.1| - 5.9e-131 436.8 0.0 6.6e-131 436.6 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|282163434|ref|YP_003355819.1| - 1.3e-08 34.3 0.2 3.4e-08 32.9 0.1 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|282163434|ref|YP_003355819.1| - 2.6e-07 29.2 0.0 3.6e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|282163434|ref|YP_003355819.1| - 0.085 11.3 0.0 0.14 10.6 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain GFO_IDH_MocA PF01408.17 gi|282163435|ref|YP_003355820.1| - 1e-21 77.6 0.0 2.3e-21 76.5 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|282163435|ref|YP_003355820.1| - 7.2e-07 28.9 0.0 1.2e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain CheR_N PF03705.10 gi|282163435|ref|YP_003355820.1| - 0.00035 19.8 0.0 0.00087 18.6 0.0 1.7 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Phage-tail_2 PF09096.5 gi|282163435|ref|YP_003355820.1| - 0.05 13.2 0.0 0.093 12.3 0.0 1.4 1 0 0 1 1 1 0 Baseplate structural protein, domain 2 Glycos_transf_2 PF00535.21 gi|282163436|ref|YP_003355821.1| - 6.3e-26 91.0 0.0 9.6e-25 87.2 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282163436|ref|YP_003355821.1| - 2.8e-05 24.0 0.0 4.9e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|282163436|ref|YP_003355821.1| - 0.00023 21.3 0.0 0.00049 20.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Polysacc_deac_1 PF01522.16 gi|282163437|ref|YP_003355822.1| - 0.0082 15.7 0.0 0.015 14.9 0.0 1.6 1 1 0 1 1 1 1 Polysaccharide deacetylase DUF354 PF04007.7 gi|282163438|ref|YP_003355823.1| - 1.8e-23 82.9 0.0 7.5e-23 80.9 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.1 gi|282163438|ref|YP_003355823.1| - 0.0027 17.5 0.3 0.0066 16.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like Epimerase_2 PF02350.14 gi|282163438|ref|YP_003355823.1| - 0.0035 16.1 0.0 0.15 10.7 0.0 2.2 2 0 0 2 2 2 1 UDP-N-acetylglucosamine 2-epimerase Polysacc_deac_1 PF01522.16 gi|282163438|ref|YP_003355823.1| - 0.008 15.8 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase zf-C2HC_2 PF13913.1 gi|282163438|ref|YP_003355823.1| - 0.29 10.8 1.4 0.31 10.7 0.1 1.8 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Acetyltransf_6 PF13480.1 gi|282163440|ref|YP_003355825.1| - 2.7e-13 50.0 0.0 4.2e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|282163440|ref|YP_003355825.1| - 3.5e-06 25.9 5.7 5.8e-05 21.9 0.2 2.6 2 1 1 3 3 3 2 FemAB family NAAA-beta PF15508.1 gi|282163440|ref|YP_003355825.1| - 0.072 13.4 0.1 0.51 10.7 0.0 2.4 3 0 0 3 3 3 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase Glycos_transf_1 PF00534.15 gi|282163441|ref|YP_003355826.1| - 3.7e-34 117.5 0.0 5.8e-34 116.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|282163441|ref|YP_003355826.1| - 1.1e-29 103.0 2.0 2.3e-29 101.9 1.4 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_4 PF13692.1 gi|282163441|ref|YP_003355826.1| - 1.3e-25 90.1 0.0 2.1e-25 89.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282163441|ref|YP_003355826.1| - 3.3e-12 46.8 0.0 6.4e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|282163441|ref|YP_003355826.1| - 1e-08 35.3 0.0 1.9e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282163441|ref|YP_003355826.1| - 1e-08 35.1 0.0 2.6e-08 33.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Laminin_G_3 PF13385.1 gi|282163442|ref|YP_003355827.1| - 1.9e-98 327.1 37.7 3.1e-28 98.9 1.7 4.9 4 0 0 4 4 4 4 Concanavalin A-like lectin/glucanases superfamily Polysacc_deac_1 PF01522.16 gi|282163442|ref|YP_003355827.1| - 9.8e-32 109.1 0.3 4.9e-15 55.2 0.1 2.4 2 0 0 2 2 2 2 Polysaccharide deacetylase Sialidase PF02973.11 gi|282163442|ref|YP_003355827.1| - 2.1e-10 39.9 7.2 0.0093 14.9 0.0 4.8 4 3 0 4 4 4 3 Sialidase, N-terminal domain Calx-beta PF03160.9 gi|282163442|ref|YP_003355827.1| - 7.3e-09 35.4 0.7 1.7e-08 34.3 0.1 2.0 2 0 0 2 2 2 1 Calx-beta domain DUF1080 PF06439.6 gi|282163442|ref|YP_003355827.1| - 2.2e-08 34.2 0.1 1.2 8.9 0.0 4.3 4 0 0 4 4 4 3 Domain of Unknown Function (DUF1080) Laminin_G_1 PF00054.18 gi|282163442|ref|YP_003355827.1| - 3.4e-06 27.0 0.0 4 7.4 0.0 3.6 3 0 0 3 3 3 3 Laminin G domain CathepsinC_exc PF08773.6 gi|282163442|ref|YP_003355827.1| - 5.4e-05 23.3 1.5 8.7 6.5 0.0 3.9 3 0 0 3 3 3 3 Cathepsin C exclusion domain RL11D PF11088.3 gi|282163442|ref|YP_003355827.1| - 0.52 10.1 4.6 1.2e+02 2.5 0.0 4.4 4 0 0 4 4 4 0 Glycoprotein encoding membrane proteins RL5A and RL6 Epimerase PF01370.16 gi|282163443|ref|YP_003355828.1| - 1.4e-67 227.5 0.0 1.9e-67 227.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|282163443|ref|YP_003355828.1| - 1.6e-28 99.2 0.0 2.1e-28 98.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|282163443|ref|YP_003355828.1| - 2.5e-24 85.7 0.0 9.2e-24 83.8 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|282163443|ref|YP_003355828.1| - 7.3e-20 71.0 0.0 1.1e-19 70.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|282163443|ref|YP_003355828.1| - 7.9e-20 70.8 0.1 2.3e-18 66.0 0.1 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|282163443|ref|YP_003355828.1| - 9.6e-11 42.0 0.0 1.3e-10 41.6 0.0 1.3 1 1 0 1 1 1 1 NADH(P)-binding Epimerase_Csub PF13950.1 gi|282163443|ref|YP_003355828.1| - 9.2e-06 25.5 0.0 2.8e-05 23.9 0.0 1.8 1 1 1 2 2 2 1 UDP-glucose 4-epimerase C-term subunit NmrA PF05368.8 gi|282163443|ref|YP_003355828.1| - 0.007 15.6 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|282163443|ref|YP_003355828.1| - 0.012 15.5 0.0 0.032 14.1 0.0 1.7 2 0 0 2 2 2 0 short chain dehydrogenase Saccharop_dh PF03435.13 gi|282163443|ref|YP_003355828.1| - 0.025 13.5 0.1 0.034 13.1 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase DegT_DnrJ_EryC1 PF01041.12 gi|282163444|ref|YP_003355829.1| - 1.1e-139 465.4 0.0 1.3e-139 465.3 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|282163444|ref|YP_003355829.1| - 7.7e-11 41.5 0.0 1.2e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|282163444|ref|YP_003355829.1| - 1.1e-08 34.5 0.0 1.6e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|282163444|ref|YP_003355829.1| - 6.7e-06 25.0 0.0 1.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|282163444|ref|YP_003355829.1| - 1.2e-05 23.7 0.0 1.9e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme PepSY PF03413.14 gi|282163444|ref|YP_003355829.1| - 0.087 13.4 0.2 15 6.3 0.0 3.2 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain Laminin_G_3 PF13385.1 gi|282163445|ref|YP_003355830.1| - 2.7e-29 102.4 2.3 2.7e-29 102.4 1.6 4.0 3 1 1 4 4 4 1 Concanavalin A-like lectin/glucanases superfamily Hepar_II_III PF07940.8 gi|282163445|ref|YP_003355830.1| - 0.0026 17.6 0.1 0.0065 16.3 0.1 1.7 1 0 0 1 1 1 1 Heparinase II/III-like protein PLRV_ORF5 PF01690.12 gi|282163445|ref|YP_003355830.1| - 0.003 16.7 4.7 0.003 16.7 3.2 6.3 3 2 3 6 6 6 1 Potato leaf roll virus readthrough protein Sialidase PF02973.11 gi|282163445|ref|YP_003355830.1| - 0.0061 15.5 0.1 0.016 14.1 0.1 1.7 1 1 0 1 1 1 1 Sialidase, N-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|282163446|ref|YP_003355831.1| - 1.7e-34 118.8 0.0 2.6e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|282163446|ref|YP_003355831.1| - 2.5e-21 75.8 0.0 1e-20 73.8 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|282163446|ref|YP_003355831.1| - 2.8e-18 65.9 0.0 6.5e-18 64.7 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain Polysacc_synt PF01943.12 gi|282163447|ref|YP_003355832.1| - 4.2e-31 108.2 29.4 4.2e-31 108.2 20.4 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|282163447|ref|YP_003355832.1| - 4.6e-18 65.5 42.7 1.7e-17 63.7 17.2 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|282163447|ref|YP_003355832.1| - 1.5e-13 50.8 58.0 6.4e-11 42.2 9.0 4.4 3 2 1 4 4 4 4 Polysaccharide biosynthesis C-terminal domain MatE PF01554.13 gi|282163447|ref|YP_003355832.1| - 4.3e-08 32.9 35.0 0.00013 21.6 10.2 2.6 2 0 0 2 2 2 2 MatE MVIN PF03023.9 gi|282163447|ref|YP_003355832.1| - 1.8e-06 26.6 33.8 1.8e-06 26.6 23.4 2.2 1 1 0 2 2 2 1 MviN-like protein PMT_2 PF13231.1 gi|282163448|ref|YP_003355833.1| - 0.0021 17.9 19.4 0.0021 17.9 13.5 4.9 3 2 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF354 PF04007.7 gi|282163449|ref|YP_003355834.1| - 2.2e-32 112.2 0.1 2.4e-32 112.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) DUF2482 PF10655.4 gi|282163449|ref|YP_003355834.1| - 0.062 13.3 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Hypothetical protein of unknown function (DUF2482) UDPG_MGDP_dh_N PF03721.9 gi|282163450|ref|YP_003355835.1| - 1.2e-47 161.6 0.0 1.4e-46 158.1 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|282163450|ref|YP_003355835.1| - 1.7e-29 102.0 0.1 2.6e-28 98.2 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|282163450|ref|YP_003355835.1| - 1.2e-25 89.5 0.0 2.5e-25 88.5 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.10 gi|282163450|ref|YP_003355835.1| - 8.8e-10 38.6 0.0 6.5e-06 26.0 0.0 2.6 2 1 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|282163450|ref|YP_003355835.1| - 0.00024 20.8 0.0 0.053 13.2 0.0 2.6 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_11 PF14833.1 gi|282163450|ref|YP_003355835.1| - 0.019 15.0 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|282163450|ref|YP_003355835.1| - 0.025 13.7 0.8 1.1 8.4 0.0 3.1 3 1 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ldh_1_N PF00056.18 gi|282163450|ref|YP_003355835.1| - 0.049 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Hepar_II_III PF07940.8 gi|282163451|ref|YP_003355836.1| - 0.00031 20.5 0.0 0.00081 19.2 0.0 1.7 1 0 0 1 1 1 1 Heparinase II/III-like protein DUF1889 PF08986.5 gi|282163451|ref|YP_003355836.1| - 0.083 13.0 0.0 0.3 11.2 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1889) Ninjurin PF04923.7 gi|282163452|ref|YP_003355837.1| - 0.8 9.4 4.8 1.2 8.9 3.3 1.3 1 1 0 1 1 1 0 Ninjurin DUF1616 PF07760.6 gi|282163453|ref|YP_003355838.1| - 7e-73 245.2 1.5 7.9e-73 245.0 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Plant_vir_prot PF01307.12 gi|282163453|ref|YP_003355838.1| - 0.055 13.1 0.0 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 Plant viral movement protein DUF4131 PF13567.1 gi|282163453|ref|YP_003355838.1| - 0.99 8.7 5.0 0.54 9.6 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) YfhO PF09586.5 gi|282163453|ref|YP_003355838.1| - 7.8 4.3 6.6 18 3.1 4.6 1.7 1 1 0 1 1 1 0 Bacterial membrane protein YfhO DUF362 PF04015.7 gi|282163454|ref|YP_003355839.1| - 1.6e-30 106.0 0.0 1.9e-22 79.7 0.0 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF362) DDE_Tnp_IS66 PF03050.9 gi|282163456|ref|YP_003355841.1| - 2e-32 112.5 0.0 2.6e-32 112.1 0.0 1.2 1 0 0 1 1 1 1 Transposase IS66 family zf-RING_5 PF14634.1 gi|282163456|ref|YP_003355841.1| - 0.11 12.2 3.5 0.32 10.7 0.0 2.5 2 0 0 2 2 2 0 zinc-RING finger domain Transposase_mut PF00872.13 gi|282163457|ref|YP_003355842.1| - 3.7e-45 154.0 0.0 4.3e-45 153.9 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|282163457|ref|YP_003355842.1| - 0.00022 21.3 0.1 0.00069 19.7 0.0 1.8 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.12 gi|282163457|ref|YP_003355842.1| - 0.0062 16.1 0.1 0.11 12.0 0.1 2.2 1 1 1 2 2 2 1 Transposase Transposase_mut PF00872.13 gi|282163458|ref|YP_003355843.1| - 3e-45 154.4 0.0 3.5e-45 154.2 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family DDE_Tnp_IS66 PF03050.9 gi|282163459|ref|YP_003355844.1| - 9.4e-11 41.4 0.0 1.5e-10 40.8 0.0 1.3 2 0 0 2 2 2 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.1 gi|282163459|ref|YP_003355844.1| - 0.0067 16.3 0.1 0.0082 16.1 0.1 1.1 1 0 0 1 1 1 1 DDE domain DIM PF08194.7 gi|282163460|ref|YP_003355845.1| - 0.17 11.8 1.4 0.25 11.3 1.0 1.2 1 0 0 1 1 1 0 DIM protein Lamprin PF06403.6 gi|282163460|ref|YP_003355845.1| - 4.1 7.1 33.0 0.25 11.0 15.8 2.6 1 1 1 2 2 2 0 Lamprin CxxCxxCC PF03692.10 gi|282163462|ref|YP_003355847.1| - 1.7e-07 31.5 1.2 3.4e-07 30.6 0.8 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain ELFV_dehydrog PF00208.16 gi|282163463|ref|YP_003355848.1| - 1.8e-60 204.5 1.4 2.6e-60 204.0 0.9 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|282163463|ref|YP_003355848.1| - 5.3e-44 148.9 0.0 9e-44 148.2 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|282163463|ref|YP_003355848.1| - 0.02 14.0 0.1 0.04 13.0 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TcpQ PF10671.4 gi|282163463|ref|YP_003355848.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Toxin co-regulated pilus biosynthesis protein Q TrkA_N PF02254.13 gi|282163463|ref|YP_003355848.1| - 0.12 12.3 0.5 0.33 10.9 0.1 1.8 1 1 0 1 1 1 0 TrkA-N domain PALP PF00291.20 gi|282163464|ref|YP_003355849.1| - 5.3e-67 226.2 0.6 6.1e-67 226.0 0.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme OmdA PF13376.1 gi|282163465|ref|YP_003355850.1| - 8.9e-16 57.3 0.6 8.9e-16 57.3 0.4 2.1 3 0 0 3 3 3 1 Bacteriocin-protection, YdeI or OmpD-Associated SLT_2 PF13406.1 gi|282163465|ref|YP_003355850.1| - 0.074 11.9 0.0 0.14 11.0 0.0 1.4 1 1 0 1 1 1 0 Transglycosylase SLT domain CbiM PF01891.11 gi|282163466|ref|YP_003355851.1| - 4.1e-37 127.7 19.3 4.1e-37 127.7 13.4 1.8 2 0 0 2 2 2 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|282163466|ref|YP_003355851.1| - 0.0001 22.2 23.8 0.0001 22.2 16.5 2.6 1 1 2 3 3 3 1 Protein of unknown function (DUF3816) DUF4131 PF13567.1 gi|282163466|ref|YP_003355851.1| - 0.0027 17.1 4.3 0.0027 17.1 3.0 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4131) TMEM51 PF15345.1 gi|282163466|ref|YP_003355851.1| - 0.051 13.2 0.1 0.089 12.4 0.0 1.3 1 0 0 1 1 1 0 Transmembrane protein 51 ABC_tran PF00005.22 gi|282163467|ref|YP_003355852.1| - 1.1e-26 93.7 0.0 1.6e-26 93.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163467|ref|YP_003355852.1| - 8.4e-15 55.4 0.0 4.9e-08 33.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|282163467|ref|YP_003355852.1| - 1.3e-10 40.9 0.3 1.1e-05 24.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|282163467|ref|YP_003355852.1| - 3.4e-06 26.4 0.0 5.9e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|282163467|ref|YP_003355852.1| - 7e-05 23.2 0.0 9.5e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|282163467|ref|YP_003355852.1| - 0.00025 20.2 0.1 0.0004 19.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|282163467|ref|YP_003355852.1| - 0.00039 20.5 0.0 0.0013 18.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|282163467|ref|YP_003355852.1| - 0.00041 19.5 0.0 0.66 8.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|282163467|ref|YP_003355852.1| - 0.0017 18.2 0.0 0.0034 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|282163467|ref|YP_003355852.1| - 0.0033 17.2 0.1 0.064 13.1 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|282163467|ref|YP_003355852.1| - 0.0037 16.9 0.1 0.0082 15.8 0.0 1.6 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|282163467|ref|YP_003355852.1| - 0.0055 17.5 0.0 0.015 16.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|282163467|ref|YP_003355852.1| - 0.0093 15.0 0.0 0.028 13.5 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin AAA_16 PF13191.1 gi|282163467|ref|YP_003355852.1| - 0.012 15.5 0.2 0.02 14.8 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain MutS_V PF00488.16 gi|282163467|ref|YP_003355852.1| - 0.022 14.1 0.0 0.28 10.5 0.0 2.0 2 0 0 2 2 2 0 MutS domain V AAA_PrkA PF08298.6 gi|282163467|ref|YP_003355852.1| - 0.03 13.0 0.0 0.05 12.2 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain Mg_chelatase PF01078.16 gi|282163467|ref|YP_003355852.1| - 0.033 13.3 0.0 0.056 12.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|282163467|ref|YP_003355852.1| - 0.053 13.2 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.1 gi|282163467|ref|YP_003355852.1| - 0.06 11.8 0.1 3 6.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|282163467|ref|YP_003355852.1| - 0.066 12.6 0.2 0.7 9.3 0.0 2.4 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain Rad17 PF03215.10 gi|282163467|ref|YP_003355852.1| - 0.068 11.8 0.1 0.095 11.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_28 PF13521.1 gi|282163467|ref|YP_003355852.1| - 0.069 13.1 0.1 0.15 12.0 0.0 1.6 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|282163467|ref|YP_003355852.1| - 0.072 13.2 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.1 gi|282163467|ref|YP_003355852.1| - 0.083 13.1 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain 5_3_exonuc_N PF02739.11 gi|282163467|ref|YP_003355852.1| - 0.17 11.2 0.1 0.27 10.5 0.1 1.3 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain Pro_dh PF01619.13 gi|282163467|ref|YP_003355852.1| - 0.18 10.7 0.0 0.27 10.1 0.0 1.2 1 0 0 1 1 1 0 Proline dehydrogenase CbiQ PF02361.11 gi|282163468|ref|YP_003355853.1| - 4.7e-24 85.2 16.4 6.1e-24 84.8 11.4 1.1 1 0 0 1 1 1 1 Cobalt transport protein Fe_dep_repr_C PF02742.10 gi|282163469|ref|YP_003355854.1| - 3.9e-13 48.8 0.0 7.4e-13 47.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|282163469|ref|YP_003355854.1| - 2.6e-11 43.2 0.0 4.3e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|282163469|ref|YP_003355854.1| - 9.9e-08 31.5 0.0 2.6e-07 30.2 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|282163469|ref|YP_003355854.1| - 0.00048 19.6 0.0 0.00093 18.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|282163469|ref|YP_003355854.1| - 0.003 17.3 0.0 0.0097 15.6 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|282163469|ref|YP_003355854.1| - 0.0035 16.9 0.0 0.015 15.0 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|282163469|ref|YP_003355854.1| - 0.0084 16.0 0.0 0.27 11.2 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|282163469|ref|YP_003355854.1| - 0.0095 15.3 0.0 0.024 14.0 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|282163469|ref|YP_003355854.1| - 0.013 15.3 0.0 0.022 14.5 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_5 PF01022.15 gi|282163469|ref|YP_003355854.1| - 0.013 15.1 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|282163469|ref|YP_003355854.1| - 0.013 15.1 0.0 0.049 13.2 0.0 1.8 2 0 0 2 2 2 0 HTH domain MarR PF01047.17 gi|282163469|ref|YP_003355854.1| - 0.014 15.0 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|282163469|ref|YP_003355854.1| - 0.018 15.1 0.0 0.042 13.9 0.0 1.6 2 0 0 2 2 1 0 Transcriptional regulator Phage_terminase PF10668.4 gi|282163469|ref|YP_003355854.1| - 0.022 14.5 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Phage terminase small subunit HTH_23 PF13384.1 gi|282163469|ref|YP_003355854.1| - 0.041 13.5 0.0 3.9 7.2 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_DeoR PF08220.7 gi|282163469|ref|YP_003355854.1| - 0.064 12.8 0.0 0.71 9.4 0.0 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain FeoC PF09012.5 gi|282163469|ref|YP_003355854.1| - 0.087 12.5 0.0 0.087 12.5 0.0 2.3 2 1 0 2 2 1 0 FeoC like transcriptional regulator BRCT PF00533.21 gi|282163469|ref|YP_003355854.1| - 0.12 12.5 0.1 0.23 11.6 0.0 1.8 1 1 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain HTH_27 PF13463.1 gi|282163469|ref|YP_003355854.1| - 0.12 12.7 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|282163469|ref|YP_003355854.1| - 0.13 12.1 0.0 0.48 10.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain FaeA PF04703.7 gi|282163469|ref|YP_003355854.1| - 0.14 12.3 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein DUF2298 PF10060.4 gi|282163471|ref|YP_003355856.1| - 2.9e-17 62.6 36.1 2.9e-17 62.6 25.1 2.3 1 1 1 2 2 2 2 Uncharacterized membrane protein (DUF2298) NTP_transferase PF00483.18 gi|282163472|ref|YP_003355857.1| - 7.6e-44 149.8 0.0 1e-43 149.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|282163472|ref|YP_003355857.1| - 6.2e-15 53.9 29.1 1.2e-07 30.9 2.1 4.9 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|282163472|ref|YP_003355857.1| - 2.2e-13 50.5 0.0 3e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|282163472|ref|YP_003355857.1| - 1.3e-07 31.0 2.2 1.3e-07 31.0 1.5 4.9 5 0 0 5 5 5 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|282163472|ref|YP_003355857.1| - 6.1e-05 22.6 0.0 0.0058 16.1 0.0 2.4 2 1 0 2 2 2 2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PGM_PMM_I PF02878.11 gi|282163473|ref|YP_003355858.1| - 1.3e-38 131.6 0.0 2.6e-38 130.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|282163473|ref|YP_003355858.1| - 4.9e-27 94.2 0.1 1.3e-26 92.9 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|282163473|ref|YP_003355858.1| - 5.2e-16 58.6 0.0 9.5e-16 57.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|282163473|ref|YP_003355858.1| - 6.2e-11 42.1 0.1 1.4e-10 41.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain SIS PF01380.17 gi|282163474|ref|YP_003355859.1| - 1.1e-53 180.3 3.8 5.3e-32 110.1 0.7 2.7 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|282163474|ref|YP_003355859.1| - 9e-24 83.9 0.2 3.2e-23 82.1 0.1 1.9 1 1 1 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|282163474|ref|YP_003355859.1| - 1.4e-21 76.6 0.4 6.8e-16 57.9 0.1 2.5 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|282163474|ref|YP_003355859.1| - 2e-21 76.0 0.0 4e-21 75.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|282163474|ref|YP_003355859.1| - 0.00016 20.5 0.1 0.00027 19.6 0.1 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|282163474|ref|YP_003355859.1| - 0.0034 17.0 0.2 0.051 13.2 0.0 2.6 2 0 0 2 2 2 1 SIS domain NTP_transferase PF00483.18 gi|282163475|ref|YP_003355860.1| - 3.2e-44 151.0 0.2 4.3e-44 150.6 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|282163475|ref|YP_003355860.1| - 3e-18 64.4 20.1 9.7e-10 37.5 2.9 5.9 4 1 3 7 7 7 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|282163475|ref|YP_003355860.1| - 3.7e-17 62.8 0.0 5.3e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|282163475|ref|YP_003355860.1| - 3.7e-09 35.9 16.9 7.8e-08 31.7 1.1 4.3 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|282163475|ref|YP_003355860.1| - 1.4e-06 28.0 0.6 2.1e-06 27.4 0.4 1.3 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_4 PF13562.1 gi|282163475|ref|YP_003355860.1| - 0.0099 15.5 0.1 0.13 11.8 0.1 2.7 1 1 0 1 1 1 1 Sugar nucleotidyl transferase CTP_transf_3 PF02348.14 gi|282163475|ref|YP_003355860.1| - 0.019 14.6 0.1 0.041 13.5 0.0 1.5 2 0 0 2 2 2 0 Cytidylyltransferase Glyco_tranf_2_3 PF13641.1 gi|282163475|ref|YP_003355860.1| - 0.025 14.4 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Gsf2 PF11055.3 gi|282163475|ref|YP_003355860.1| - 0.12 10.9 0.0 0.17 10.4 0.0 1.1 1 0 0 1 1 1 0 Glucose signalling factor 2 Ribosomal_L40e PF01020.12 gi|282163476|ref|YP_003355861.1| - 8.5e-07 28.4 7.7 1e-06 28.2 5.3 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|282163476|ref|YP_003355861.1| - 0.0015 18.3 1.1 0.0015 18.2 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|282163476|ref|YP_003355861.1| - 0.003 16.9 4.1 0.0047 16.3 2.9 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|282163476|ref|YP_003355861.1| - 0.0064 15.9 0.9 0.009 15.4 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.13 gi|282163476|ref|YP_003355861.1| - 0.01 14.8 3.6 0.016 14.3 2.5 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others zf-DHHC PF01529.15 gi|282163476|ref|YP_003355861.1| - 0.02 14.3 0.9 0.021 14.2 0.6 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase UPF0547 PF10571.4 gi|282163476|ref|YP_003355861.1| - 0.051 13.2 1.5 1.3 8.7 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 FYVE PF01363.16 gi|282163476|ref|YP_003355861.1| - 0.061 13.2 2.9 0.076 12.9 2.0 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-ribbon_3 PF13248.1 gi|282163476|ref|YP_003355861.1| - 0.068 12.3 0.6 0.1 11.8 0.4 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Methyltransf_13 PF08421.6 gi|282163476|ref|YP_003355861.1| - 0.12 11.8 0.8 8.1 6.0 0.1 2.1 1 1 1 2 2 2 0 Putative zinc binding domain DUF2082 PF09855.4 gi|282163476|ref|YP_003355861.1| - 0.13 12.0 2.7 0.74 9.6 0.1 2.0 1 1 2 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) HypA PF01155.14 gi|282163476|ref|YP_003355861.1| - 0.18 11.5 1.3 0.2 11.3 0.9 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF35_N PF12172.3 gi|282163476|ref|YP_003355861.1| - 0.29 11.0 6.9 0.25 11.3 2.6 2.1 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DnaJ_CXXCXGXG PF00684.14 gi|282163476|ref|YP_003355861.1| - 0.32 11.0 3.7 0.55 10.3 2.6 1.4 1 1 0 1 1 1 0 DnaJ central domain zf-nanos PF05741.8 gi|282163476|ref|YP_003355861.1| - 0.51 10.3 4.5 1.8 8.5 0.3 2.1 1 1 1 2 2 2 0 Nanos RNA binding domain RNA_POL_M_15KD PF02150.11 gi|282163476|ref|YP_003355861.1| - 0.6 9.8 7.8 12 5.7 0.6 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_L37e PF01907.14 gi|282163476|ref|YP_003355861.1| - 4.1 7.2 6.8 11 5.9 4.7 1.8 1 1 0 1 1 1 0 Ribosomal protein L37e PAS_9 PF13426.1 gi|282163477|ref|YP_003355862.1| - 4.7e-30 104.0 0.5 9.4e-15 54.8 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|282163477|ref|YP_003355862.1| - 4.6e-26 91.0 0.0 1.7e-09 37.6 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|282163477|ref|YP_003355862.1| - 1.9e-23 82.4 0.6 6.5e-13 48.4 0.0 3.7 3 1 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|282163477|ref|YP_003355862.1| - 3.8e-19 68.5 0.0 1.2e-17 63.8 0.0 2.9 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|282163477|ref|YP_003355862.1| - 8.2e-15 54.0 3.9 8.4e-05 22.2 0.1 3.5 3 0 0 3 3 3 3 PAS domain PAS_7 PF12860.2 gi|282163477|ref|YP_003355862.1| - 3e-07 30.4 2.8 0.0082 16.1 0.1 4.5 4 1 0 4 4 4 2 PAS fold PAS_11 PF14598.1 gi|282163477|ref|YP_003355862.1| - 0.0003 20.7 0.0 0.076 12.9 0.0 2.3 2 0 0 2 2 2 1 PAS domain TBPIP PF07106.8 gi|282163477|ref|YP_003355862.1| - 0.0021 17.6 1.6 0.021 14.3 0.0 2.3 2 0 0 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_45 PF14947.1 gi|282163477|ref|YP_003355862.1| - 0.0042 16.8 0.1 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|282163477|ref|YP_003355862.1| - 0.0095 15.3 0.0 0.027 13.8 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|282163477|ref|YP_003355862.1| - 0.056 13.0 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|282163477|ref|YP_003355862.1| - 0.092 12.4 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.1 gi|282163477|ref|YP_003355862.1| - 0.1 12.1 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FAM194 PF14977.1 gi|282163477|ref|YP_003355862.1| - 0.13 11.2 0.0 0.4 9.6 0.0 1.7 2 0 0 2 2 2 0 FAM194 protein DUF457 PF04307.9 gi|282163478|ref|YP_003355863.1| - 3.5e-17 62.1 4.0 4.5e-17 61.8 2.8 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) IGPD PF00475.13 gi|282163479|ref|YP_003355864.1| - 1e-62 210.2 3.6 1.3e-62 209.9 2.5 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase EamA PF00892.15 gi|282163480|ref|YP_003355865.1| - 1.1e-40 138.5 40.0 2e-21 76.3 10.0 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|282163480|ref|YP_003355865.1| - 3.2e-08 33.7 35.1 5.5e-08 33.0 8.4 3.0 2 1 0 2 2 2 1 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|282163480|ref|YP_003355865.1| - 5.7e-06 25.3 16.1 6.9e-06 25.1 11.1 1.1 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) TPT PF03151.11 gi|282163480|ref|YP_003355865.1| - 0.00014 21.5 5.8 0.00014 21.5 4.0 3.1 2 1 0 2 2 2 1 Triose-phosphate Transporter family UAA PF08449.6 gi|282163480|ref|YP_003355865.1| - 0.004 16.1 20.3 0.018 13.9 4.7 2.1 1 1 1 2 2 2 2 UAA transporter family PepSY_TM_1 PF13172.1 gi|282163480|ref|YP_003355865.1| - 9 6.1 9.6 0.16 11.7 0.4 2.9 3 0 0 3 3 3 0 PepSY-associated TM helix Flavodoxin_1 PF00258.20 gi|282163481|ref|YP_003355866.1| - 5.3e-12 45.9 0.0 9.7e-12 45.0 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|282163481|ref|YP_003355866.1| - 8.5e-09 35.0 0.2 0.00012 21.5 0.0 2.1 1 1 1 2 2 2 2 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.2 gi|282163481|ref|YP_003355866.1| - 1.9e-08 33.9 0.0 2.4e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|282163481|ref|YP_003355866.1| - 6.7e-07 29.4 0.0 8.7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|282163481|ref|YP_003355866.1| - 0.00051 19.4 0.1 0.0073 15.6 0.0 2.0 1 1 1 2 2 2 1 Flavodoxin EamA PF00892.15 gi|282163482|ref|YP_003355867.1| - 1.7e-51 173.5 35.9 3e-26 91.9 10.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|282163482|ref|YP_003355867.1| - 1.9e-11 44.1 32.5 1.6e-09 37.9 4.7 3.6 2 1 2 4 4 4 2 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|282163482|ref|YP_003355867.1| - 9.3e-06 24.7 20.6 2.7e-05 23.1 14.2 1.6 1 1 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) TPT PF03151.11 gi|282163482|ref|YP_003355867.1| - 0.039 13.6 27.7 1.3 8.6 8.7 3.2 2 1 0 2 2 2 0 Triose-phosphate Transporter family Chordopox_A13L PF05961.6 gi|282163482|ref|YP_003355867.1| - 2.8 7.9 5.5 6.1 6.8 0.3 2.5 2 0 0 2 2 2 0 Chordopoxvirus A13L protein DUF2530 PF10745.4 gi|282163482|ref|YP_003355867.1| - 5.3 7.0 7.9 0.45 10.5 0.1 3.0 4 0 0 4 4 4 0 Protein of unknown function (DUF2530) MutS_V PF00488.16 gi|282163483|ref|YP_003355868.1| - 3.6e-11 42.9 0.0 5.5e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.1 gi|282163483|ref|YP_003355868.1| - 0.00021 21.3 0.0 0.00077 19.5 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|282163483|ref|YP_003355868.1| - 0.0017 18.1 0.1 0.0052 16.6 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif AAA PF00004.24 gi|282163483|ref|YP_003355868.1| - 0.0046 17.1 0.4 0.027 14.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HHH PF00633.18 gi|282163483|ref|YP_003355868.1| - 0.011 15.4 0.0 6.7 6.6 0.0 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif ABC_membrane PF00664.18 gi|282163484|ref|YP_003355869.1| - 4e-40 137.9 24.3 6e-40 137.3 16.8 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|282163484|ref|YP_003355869.1| - 2.1e-37 128.4 0.0 5.5e-37 127.1 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|282163484|ref|YP_003355869.1| - 8.7e-05 22.6 1.0 0.0038 17.2 0.7 2.5 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|282163484|ref|YP_003355869.1| - 0.00023 20.4 0.0 0.00043 19.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|282163484|ref|YP_003355869.1| - 0.0012 18.3 0.1 0.0027 17.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|282163484|ref|YP_003355869.1| - 0.0017 18.4 0.5 0.004 17.1 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|282163484|ref|YP_003355869.1| - 0.0019 18.9 0.2 0.0051 17.6 0.0 1.8 2 1 0 2 2 1 1 AAA domain SMC_N PF02463.14 gi|282163484|ref|YP_003355869.1| - 0.0024 17.1 0.0 0.033 13.4 0.0 1.9 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain UPF0079 PF02367.12 gi|282163484|ref|YP_003355869.1| - 0.018 14.6 0.0 0.042 13.4 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|282163484|ref|YP_003355869.1| - 0.032 13.9 0.3 0.12 12.1 0.1 2.1 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|282163484|ref|YP_003355869.1| - 0.054 13.3 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|282163484|ref|YP_003355869.1| - 0.059 12.8 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|282163484|ref|YP_003355869.1| - 0.062 13.1 0.0 1.1 9.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|282163484|ref|YP_003355869.1| - 0.12 11.7 0.0 0.26 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|282163485|ref|YP_003355870.1| - 6e-25 87.6 0.0 1.4e-24 86.4 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|282163485|ref|YP_003355870.1| - 2.1e-18 66.6 0.1 5.2e-18 65.4 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|282163485|ref|YP_003355870.1| - 3.6e-11 42.7 0.0 1.3e-10 40.9 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain RNase_H_2 PF13482.1 gi|282163486|ref|YP_003355871.1| - 1.3e-33 116.1 0.0 2.9e-33 114.9 0.0 1.6 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|282163486|ref|YP_003355871.1| - 0.00039 20.0 0.0 0.0007 19.1 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_exo1 PF03104.14 gi|282163486|ref|YP_003355871.1| - 0.011 14.5 0.2 0.065 12.0 0.1 2.1 2 1 1 3 3 3 0 DNA polymerase family B, exonuclease domain DNA_pol_A_exo1 PF01612.15 gi|282163486|ref|YP_003355871.1| - 0.1 12.0 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 3'-5' exonuclease HHH_5 PF14520.1 gi|282163486|ref|YP_003355871.1| - 0.13 12.4 0.1 0.28 11.3 0.0 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain TetR_N PF00440.18 gi|282163487|ref|YP_003355872.1| - 1.9e-14 52.9 0.5 4.1e-14 51.9 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family AcetDehyd-dimer PF09290.6 gi|282163487|ref|YP_003355872.1| - 0.024 14.5 0.0 0.042 13.7 0.0 1.5 1 1 0 1 1 1 0 Prokaryotic acetaldehyde dehydrogenase, dimerisation LacI PF00356.16 gi|282163487|ref|YP_003355872.1| - 0.047 13.3 0.1 0.17 11.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family DUF1323 PF07037.6 gi|282163487|ref|YP_003355872.1| - 0.084 13.0 0.0 0.22 11.7 0.0 1.7 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) Peptidase_M20 PF01546.23 gi|282163488|ref|YP_003355873.1| - 8.8e-31 106.8 0.0 1.2e-30 106.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|282163488|ref|YP_003355873.1| - 1.2e-18 66.8 0.0 2.3e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Abhydrolase_6 PF12697.2 gi|282163489|ref|YP_003355874.1| - 9e-44 150.0 0.0 1e-43 149.8 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|282163489|ref|YP_003355874.1| - 3.6e-25 88.8 0.0 5.1e-23 81.8 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|282163489|ref|YP_003355874.1| - 2.4e-20 72.7 0.0 4.7e-20 71.8 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_3 PF07859.8 gi|282163489|ref|YP_003355874.1| - 0.0015 18.1 0.0 0.0065 16.0 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Ndr PF03096.9 gi|282163489|ref|YP_003355874.1| - 0.0037 15.8 0.0 0.0054 15.2 0.0 1.3 1 0 0 1 1 1 1 Ndr family Hydrolase_4 PF12146.3 gi|282163489|ref|YP_003355874.1| - 0.0063 16.3 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase DLH PF01738.13 gi|282163489|ref|YP_003355874.1| - 0.011 14.9 0.0 1.4 8.1 0.0 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family BAAT_C PF08840.6 gi|282163489|ref|YP_003355874.1| - 0.027 14.1 0.0 0.096 12.3 0.0 1.7 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal PGAP1 PF07819.8 gi|282163489|ref|YP_003355874.1| - 0.049 13.2 0.0 5 6.6 0.0 2.3 2 0 0 2 2 2 0 PGAP1-like protein CBS PF00571.23 gi|282163492|ref|YP_003355877.1| - 3.5e-26 90.7 3.3 1.4e-13 50.4 0.5 2.1 2 0 0 2 2 2 2 CBS domain Methyltransf_11 PF08241.7 gi|282163493|ref|YP_003355878.1| - 3.2e-22 78.8 0.0 6.2e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282163493|ref|YP_003355878.1| - 1.8e-19 70.0 0.0 2.9e-19 69.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163493|ref|YP_003355878.1| - 1.3e-15 57.2 0.0 1.9e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282163493|ref|YP_003355878.1| - 3.1e-13 50.2 0.0 5.5e-13 49.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282163493|ref|YP_003355878.1| - 2.7e-11 43.0 0.0 4e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|282163493|ref|YP_003355878.1| - 7.7e-10 39.0 0.5 2.1e-09 37.6 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282163493|ref|YP_003355878.1| - 2.2e-09 37.6 0.0 3.5e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282163493|ref|YP_003355878.1| - 6.3e-08 32.6 0.0 1.1e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|282163493|ref|YP_003355878.1| - 9.4e-07 28.1 0.0 1.7e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|282163493|ref|YP_003355878.1| - 1.5e-05 24.5 0.0 1.9e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_29 PF03141.11 gi|282163493|ref|YP_003355878.1| - 1.6e-05 23.4 0.0 3.4e-05 22.3 0.0 1.4 2 0 0 2 2 2 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.7 gi|282163493|ref|YP_003355878.1| - 0.00032 20.1 0.0 0.0005 19.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.9 gi|282163493|ref|YP_003355878.1| - 0.00044 19.4 0.0 0.00079 18.6 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|282163493|ref|YP_003355878.1| - 0.0006 19.2 0.0 0.0021 17.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|282163493|ref|YP_003355878.1| - 0.0033 16.4 0.0 0.78 8.7 0.0 2.2 2 0 0 2 2 2 2 Putative methyltransferase Methyltransf_8 PF05148.10 gi|282163493|ref|YP_003355878.1| - 0.0055 16.3 0.0 0.0086 15.7 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase TPMT PF05724.6 gi|282163493|ref|YP_003355878.1| - 0.0078 15.6 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) FmrO PF07091.6 gi|282163493|ref|YP_003355878.1| - 0.039 12.9 0.0 0.82 8.6 0.0 2.2 1 1 1 2 2 2 0 Ribosomal RNA methyltransferase (FmrO) RrnaAD PF00398.15 gi|282163493|ref|YP_003355878.1| - 0.05 12.6 0.0 0.07 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.5 gi|282163493|ref|YP_003355878.1| - 0.15 11.5 0.1 0.26 10.8 0.1 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DNA_alkylation PF08713.6 gi|282163494|ref|YP_003355879.1| - 1.6e-38 132.4 2.2 1.8e-38 132.1 1.5 1.1 1 0 0 1 1 1 1 DNA alkylation repair enzyme HEAT_EZ PF13513.1 gi|282163494|ref|YP_003355879.1| - 0.0046 17.3 0.0 1 9.9 0.0 3.1 3 0 0 3 3 3 1 HEAT-like repeat HEAT_2 PF13646.1 gi|282163494|ref|YP_003355879.1| - 0.0053 17.0 0.7 0.031 14.5 0.0 2.4 2 1 1 3 3 3 1 HEAT repeats HEAT PF02985.17 gi|282163494|ref|YP_003355879.1| - 0.029 14.4 0.4 0.63 10.2 0.0 3.3 4 1 0 4 4 4 0 HEAT repeat Thioredoxin_2 PF13098.1 gi|282163495|ref|YP_003355880.1| - 5.7e-12 45.8 0.0 2.1e-11 43.9 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain TPR_6 PF13174.1 gi|282163495|ref|YP_003355880.1| - 9.5e-08 32.0 1.1 0.00017 21.7 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat Thioredoxin_7 PF13899.1 gi|282163495|ref|YP_003355880.1| - 5.1e-07 29.6 0.0 7.4e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like TPR_16 PF13432.1 gi|282163495|ref|YP_003355880.1| - 7.7e-07 29.6 1.6 1.1e-06 29.1 0.1 1.8 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282163495|ref|YP_003355880.1| - 9.9e-06 25.0 0.6 0.00022 20.8 0.0 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat YfiO PF13525.1 gi|282163495|ref|YP_003355880.1| - 1.3e-05 24.7 0.2 3.3e-05 23.4 0.2 1.6 1 1 0 1 1 1 1 Outer membrane lipoprotein Thioredoxin_8 PF13905.1 gi|282163495|ref|YP_003355880.1| - 3.9e-05 23.7 0.0 0.13 12.3 0.0 2.4 1 1 1 2 2 2 2 Thioredoxin-like TPR_11 PF13414.1 gi|282163495|ref|YP_003355880.1| - 6e-05 22.6 0.8 0.00015 21.3 0.1 1.8 2 0 0 2 2 2 1 TPR repeat TPR_14 PF13428.1 gi|282163495|ref|YP_003355880.1| - 0.00054 20.3 0.5 0.0033 17.9 0.0 2.4 2 1 1 3 3 3 1 Tetratricopeptide repeat Redoxin PF08534.5 gi|282163495|ref|YP_003355880.1| - 0.00079 18.9 0.0 0.011 15.2 0.0 2.1 1 1 1 2 2 2 1 Redoxin TPR_1 PF00515.23 gi|282163495|ref|YP_003355880.1| - 0.026 14.1 0.0 0.08 12.5 0.0 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat Thioredox_DsbH PF03190.10 gi|282163495|ref|YP_003355880.1| - 0.031 13.9 0.0 0.05 13.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF255 AhpC-TSA PF00578.16 gi|282163495|ref|YP_003355880.1| - 0.1 12.3 0.0 2.4 7.8 0.0 2.3 1 1 1 2 2 2 0 AhpC/TSA family TPR_12 PF13424.1 gi|282163495|ref|YP_003355880.1| - 0.11 12.4 0.2 0.22 11.5 0.0 1.6 2 0 0 2 2 2 0 Tetratricopeptide repeat Exo5 PF09810.4 gi|282163496|ref|YP_003355881.1| - 3.1e-53 181.0 0.0 1.4e-52 178.9 0.0 2.0 1 1 0 1 1 1 1 Exonuclease V - a 5' deoxyribonuclease PDDEXK_1 PF12705.2 gi|282163496|ref|YP_003355881.1| - 2.1e-08 33.8 0.0 2.9e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Pribosyltran PF00156.22 gi|282163498|ref|YP_003355883.1| - 1e-20 73.7 0.9 1.5e-20 73.1 0.6 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|282163498|ref|YP_003355883.1| - 6.6e-05 22.1 0.1 8.7e-05 21.8 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_23 PF13384.1 gi|282163498|ref|YP_003355883.1| - 0.0045 16.6 0.0 0.0086 15.7 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|282163498|ref|YP_003355883.1| - 0.0046 16.3 0.1 0.033 13.6 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 PRTase_2 PF15609.1 gi|282163498|ref|YP_003355883.1| - 0.006 15.9 0.6 0.024 13.9 0.4 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_7 PF02796.10 gi|282163498|ref|YP_003355883.1| - 0.0072 16.1 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|282163498|ref|YP_003355883.1| - 0.015 14.8 0.5 0.036 13.7 0.1 1.8 2 0 0 2 2 2 0 HTH domain HTH_28 PF13518.1 gi|282163498|ref|YP_003355883.1| - 0.025 14.6 0.1 0.16 11.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|282163498|ref|YP_003355883.1| - 0.035 13.4 0.1 0.071 12.4 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2481 PF10654.4 gi|282163498|ref|YP_003355883.1| - 0.054 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) MarR_2 PF12802.2 gi|282163498|ref|YP_003355883.1| - 0.062 12.9 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.7 gi|282163498|ref|YP_003355883.1| - 0.08 12.5 0.1 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain PAX PF00292.13 gi|282163498|ref|YP_003355883.1| - 0.087 12.5 0.0 0.87 9.3 0.0 2.2 2 0 0 2 2 2 0 'Paired box' domain HTH_24 PF13412.1 gi|282163498|ref|YP_003355883.1| - 0.11 11.9 0.2 0.21 11.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|282163498|ref|YP_003355883.1| - 0.13 11.6 0.0 0.25 10.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family PIN PF01850.16 gi|282163499|ref|YP_003355884.1| - 0.0042 17.4 0.5 0.07 13.4 0.2 2.0 1 1 1 2 2 2 1 PIN domain UPF0278 PF08745.6 gi|282163499|ref|YP_003355884.1| - 0.0062 15.8 0.1 0.017 14.3 0.0 1.7 2 0 0 2 2 2 1 UPF0278 family zinc-ribbons_6 PF07191.7 gi|282163499|ref|YP_003355884.1| - 0.032 13.9 0.2 0.048 13.4 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons ADK_lid PF05191.9 gi|282163499|ref|YP_003355884.1| - 0.18 11.4 2.3 0.88 9.2 1.6 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid Metallophos_2 PF12850.2 gi|282163501|ref|YP_003355886.1| - 5.1e-27 94.6 0.1 5.9e-27 94.4 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|282163501|ref|YP_003355886.1| - 1.8e-09 37.3 0.4 7.8e-08 31.9 0.2 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase MobB PF03205.9 gi|282163501|ref|YP_003355886.1| - 0.099 12.3 0.2 0.92 9.2 0.0 2.5 1 1 2 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Helicase_C_2 PF13307.1 gi|282163502|ref|YP_003355887.1| - 3.4e-27 95.4 0.0 1.3e-26 93.5 0.0 1.9 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|282163502|ref|YP_003355887.1| - 1.8e-24 86.0 0.8 6.1e-24 84.3 0.6 1.8 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|282163502|ref|YP_003355887.1| - 3.5e-09 36.3 0.3 4.9e-06 26.1 0.0 3.1 3 0 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|282163502|ref|YP_003355887.1| - 2.1e-06 27.6 0.1 0.0055 16.5 0.0 2.5 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|282163502|ref|YP_003355887.1| - 8.4e-05 21.8 0.1 0.016 14.4 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein Zot PF05707.7 gi|282163502|ref|YP_003355887.1| - 0.00044 19.7 0.0 0.061 12.7 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_30 PF13604.1 gi|282163502|ref|YP_003355887.1| - 0.0037 16.8 0.1 0.0064 16.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|282163502|ref|YP_003355887.1| - 0.0097 15.0 0.0 0.019 14.0 0.0 1.4 1 0 0 1 1 1 1 KaiC DUF2075 PF09848.4 gi|282163502|ref|YP_003355887.1| - 0.012 14.5 0.1 0.72 8.7 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) TIP49 PF06068.8 gi|282163502|ref|YP_003355887.1| - 0.035 12.8 0.2 0.057 12.1 0.1 1.3 1 0 0 1 1 1 0 TIP49 C-terminus Ribosomal_S3Ae PF01015.13 gi|282163503|ref|YP_003355888.1| - 9.2e-73 243.7 1.8 1e-72 243.5 1.3 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Ribosomal_60s PF00428.14 gi|282163503|ref|YP_003355888.1| - 6.9 7.1 21.6 8.1 6.9 13.5 2.2 2 1 0 2 2 2 0 60s Acidic ribosomal protein Neisseria_TspB PF05616.8 gi|282163503|ref|YP_003355888.1| - 9.5 4.4 7.6 14 3.9 5.3 1.2 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein PAS_9 PF13426.1 gi|282163504|ref|YP_003355889.1| - 1.1e-51 173.5 0.7 5e-16 58.9 0.0 5.1 5 0 0 5 5 5 4 PAS domain PAS PF00989.19 gi|282163504|ref|YP_003355889.1| - 1.3e-51 173.1 0.4 3.2e-15 55.9 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_3 PF08447.6 gi|282163504|ref|YP_003355889.1| - 4.1e-48 161.4 0.3 3.8e-13 49.3 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|282163504|ref|YP_003355889.1| - 1.6e-29 102.1 1.4 3.4e-10 39.9 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|282163504|ref|YP_003355889.1| - 5e-24 83.2 0.6 7.6e-07 28.7 0.0 4.5 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.21 gi|282163504|ref|YP_003355889.1| - 2.8e-22 78.5 0.0 7.6e-22 77.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|282163504|ref|YP_003355889.1| - 5.5e-05 22.9 0.4 0.00016 21.4 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|282163504|ref|YP_003355889.1| - 0.00096 19.0 0.5 0.0054 16.6 0.2 2.6 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|282163504|ref|YP_003355889.1| - 0.0028 17.3 0.0 0.0069 16.0 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|282163504|ref|YP_003355889.1| - 0.022 14.3 0.0 0.045 13.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMP24_GP25L PF01105.19 gi|282163504|ref|YP_003355889.1| - 1.7 8.3 10.2 0.58 9.8 0.2 3.5 4 0 0 4 4 4 0 emp24/gp25L/p24 family/GOLD Ferric_reduct PF01794.14 gi|282163505|ref|YP_003355890.1| - 0.073 13.1 5.6 0.086 12.9 3.9 1.2 1 0 0 1 1 1 0 Ferric reductase like transmembrane component CRPA PF05745.6 gi|282163505|ref|YP_003355890.1| - 0.11 12.2 6.8 0.14 11.9 4.7 1.1 1 0 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF3995 PF13160.1 gi|282163505|ref|YP_003355890.1| - 0.76 9.8 6.9 0.92 9.5 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3995) SdpI PF13630.1 gi|282163505|ref|YP_003355890.1| - 2.4 7.9 10.2 3.5 7.4 7.0 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family SK_channel PF03530.9 gi|282163505|ref|YP_003355890.1| - 2.6 7.9 5.6 2.9 7.7 3.9 1.0 1 0 0 1 1 1 0 Calcium-activated SK potassium channel MMgT PF10270.4 gi|282163505|ref|YP_003355890.1| - 2.8 8.4 4.7 3.8 8.0 3.3 1.2 1 0 0 1 1 1 0 Membrane magnesium transporter NfeD PF01957.13 gi|282163505|ref|YP_003355890.1| - 3.9 7.6 7.7 4.2 7.4 5.3 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF202 PF02656.10 gi|282163505|ref|YP_003355890.1| - 6.9 6.9 6.5 14 5.9 4.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF1700 PF08006.6 gi|282163505|ref|YP_003355890.1| - 7.2 5.8 9.6 0.46 9.7 1.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1700) Fasciclin PF02469.17 gi|282163506|ref|YP_003355891.1| - 9e-16 58.0 0.0 1.4e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 Fasciclin domain DUF2946 PF11162.3 gi|282163506|ref|YP_003355891.1| - 0.053 13.7 8.4 0.13 12.5 5.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) Plasmid_killer PF05015.8 gi|282163507|ref|YP_003355892.1| - 6.6e-05 22.9 0.1 8e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 Plasmid maintenance system killer protein Mnd1 PF03962.10 gi|282163508|ref|YP_003355893.1| - 0.015 14.9 0.3 0.018 14.6 0.2 1.1 1 0 0 1 1 1 0 Mnd1 family Sec62 PF03839.11 gi|282163508|ref|YP_003355893.1| - 0.029 13.7 0.1 0.029 13.7 0.1 1.1 1 0 0 1 1 1 0 Translocation protein Sec62 Laminin_G_3 PF13385.1 gi|282163509|ref|YP_003355894.1| - 1e-28 100.5 0.8 1e-28 100.5 0.6 3.2 2 1 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Hepar_II_III PF07940.8 gi|282163509|ref|YP_003355894.1| - 4e-06 26.7 0.1 2.1e-05 24.4 0.0 2.3 2 0 0 2 2 2 1 Heparinase II/III-like protein Sialidase PF02973.11 gi|282163509|ref|YP_003355894.1| - 0.0027 16.6 0.0 0.0065 15.4 0.0 1.5 1 0 0 1 1 1 1 Sialidase, N-terminal domain DUF1080 PF06439.6 gi|282163509|ref|YP_003355894.1| - 0.018 14.9 0.2 0.67 9.8 0.0 2.6 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1080) Laminin_G_2 PF02210.19 gi|282163509|ref|YP_003355894.1| - 0.086 12.8 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Laminin G domain UDPG_MGDP_dh_N PF03721.9 gi|282163510|ref|YP_003355895.1| - 1.6e-36 125.4 0.0 2.5e-36 124.8 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|282163510|ref|YP_003355895.1| - 2.4e-20 72.5 0.0 7.8e-20 70.8 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|282163510|ref|YP_003355895.1| - 1.4e-17 63.7 0.0 4e-17 62.3 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|282163510|ref|YP_003355895.1| - 0.036 13.8 0.1 10 5.9 0.0 2.5 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Cyto_ox_2 PF02322.10 gi|282163511|ref|YP_003355896.1| - 0.19 10.8 7.2 0.89 8.6 5.2 1.7 1 1 0 1 1 1 0 Cytochrome oxidase subunit II PMT_2 PF13231.1 gi|282163512|ref|YP_003355897.1| - 5.8e-05 23.0 18.3 5.8e-05 23.0 12.7 4.2 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Polysacc_synt PF01943.12 gi|282163513|ref|YP_003355898.1| - 3.3e-09 36.4 38.1 3.3e-09 36.4 26.4 2.1 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|282163513|ref|YP_003355898.1| - 1.6e-06 27.7 61.4 5.4e-05 22.7 21.2 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|282163513|ref|YP_003355898.1| - 4.1e-05 23.3 12.7 4.1e-05 23.3 8.8 4.1 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF354 PF04007.7 gi|282163514|ref|YP_003355899.1| - 2.7e-27 95.5 0.0 3.3e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Robl_LC7 PF03259.12 gi|282163515|ref|YP_003355900.1| - 2.3e-11 43.0 0.6 3.8e-11 42.4 0.4 1.3 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|282163515|ref|YP_003355900.1| - 0.0048 16.5 0.4 0.006 16.2 0.3 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting Hepar_II_III PF07940.8 gi|282163517|ref|YP_003355902.1| - 2.6e-05 24.1 0.1 8e-05 22.4 0.1 1.9 1 0 0 1 1 1 1 Heparinase II/III-like protein PIG-L PF02585.12 gi|282163518|ref|YP_003355903.1| - 3.1e-19 69.7 0.0 4.3e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase VASP_tetra PF08776.6 gi|282163518|ref|YP_003355903.1| - 8.3 5.8 6.7 0.47 9.7 0.2 2.2 3 0 0 3 3 3 0 VASP tetramerisation domain WbqC PF08889.6 gi|282163519|ref|YP_003355904.1| - 4.2e-63 212.7 0.0 4.7e-63 212.5 0.0 1.0 1 0 0 1 1 1 1 WbqC-like protein family DUF354 PF04007.7 gi|282163520|ref|YP_003355905.1| - 3.4e-30 105.0 0.0 4.3e-30 104.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_1_3 PF13528.1 gi|282163520|ref|YP_003355905.1| - 0.048 12.8 0.0 4.6 6.3 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase family 1 Glycos_transf_2 PF00535.21 gi|282163521|ref|YP_003355906.1| - 1.1e-26 93.5 0.0 2.8e-22 79.1 0.0 2.7 3 0 0 3 3 3 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282163521|ref|YP_003355906.1| - 2.2e-05 24.3 0.0 5.5e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|282163521|ref|YP_003355906.1| - 0.035 14.4 0.0 0.13 12.6 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase family 2 GFO_IDH_MocA PF01408.17 gi|282163522|ref|YP_003355907.1| - 5.2e-28 97.9 0.3 1.6e-27 96.3 0.1 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|282163522|ref|YP_003355907.1| - 8.6e-12 44.8 0.0 1.6e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain OCD_Mu_crystall PF02423.10 gi|282163522|ref|YP_003355907.1| - 0.00011 21.0 0.0 0.008 14.9 0.1 2.2 2 0 0 2 2 2 2 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_2 PF03446.10 gi|282163522|ref|YP_003355907.1| - 0.00058 19.7 0.2 0.0019 18.0 0.1 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase DapB_N PF01113.15 gi|282163522|ref|YP_003355907.1| - 0.0013 18.6 1.4 0.016 15.1 0.1 2.8 2 1 1 3 3 3 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.12 gi|282163522|ref|YP_003355907.1| - 0.0041 17.5 0.1 0.016 15.6 0.0 2.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent HTH_6 PF01418.12 gi|282163522|ref|YP_003355907.1| - 0.025 14.3 0.0 0.074 12.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family Shikimate_DH PF01488.15 gi|282163522|ref|YP_003355907.1| - 0.059 13.4 0.4 0.46 10.5 0.1 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DegT_DnrJ_EryC1 PF01041.12 gi|282163523|ref|YP_003355908.1| - 6.2e-134 446.6 0.0 6.9e-134 446.4 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|282163523|ref|YP_003355908.1| - 3.1e-11 42.9 0.4 8.7e-11 41.4 0.3 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|282163523|ref|YP_003355908.1| - 1.5e-07 30.0 0.1 1.9e-07 29.7 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|282163523|ref|YP_003355908.1| - 9e-07 28.1 0.0 3.1e-06 26.4 0.0 1.9 1 1 1 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|282163523|ref|YP_003355908.1| - 9.7e-05 21.2 0.0 0.00018 20.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Hexapep PF00132.19 gi|282163524|ref|YP_003355909.1| - 1.1e-29 100.6 17.3 1.2e-08 34.0 0.2 5.2 5 0 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|282163524|ref|YP_003355909.1| - 1.6e-16 59.5 16.4 3.9e-06 26.3 0.1 5.3 5 0 0 5 5 5 5 Hexapeptide repeat of succinyl-transferase ParBc PF02195.13 gi|282163525|ref|YP_003355910.1| - 3e-09 36.8 0.1 8.6e-09 35.3 0.1 1.8 1 0 0 1 1 1 1 ParB-like nuclease domain Myb_DNA-bind_6 PF13921.1 gi|282163525|ref|YP_003355910.1| - 0.0052 16.8 0.0 0.026 14.6 0.0 2.2 2 0 0 2 2 2 1 Myb-like DNA-binding domain Sigma70_r4_2 PF08281.7 gi|282163525|ref|YP_003355910.1| - 0.016 14.6 0.1 0.1 12.0 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|282163525|ref|YP_003355910.1| - 0.038 13.6 0.0 0.13 11.9 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain COG5 PF10392.4 gi|282163525|ref|YP_003355910.1| - 0.19 11.6 1.2 0.39 10.6 0.3 2.0 1 1 0 2 2 2 0 Golgi transport complex subunit 5 Enkurin PF13864.1 gi|282163525|ref|YP_003355910.1| - 1.2 9.3 5.1 7.9 6.7 0.3 3.1 1 1 2 3 3 3 0 Calmodulin-binding Aminotran_5 PF00266.14 gi|282163526|ref|YP_003355911.1| - 2.1e-98 329.5 0.2 2.4e-98 329.3 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|282163526|ref|YP_003355911.1| - 1.1e-10 41.1 0.4 1.6e-10 40.6 0.3 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|282163526|ref|YP_003355911.1| - 1.1e-06 27.9 0.8 1.7e-06 27.3 0.5 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SLA_LP_auto_ag PF05889.8 gi|282163527|ref|YP_003355912.1| - 1.2e-47 162.2 0.0 2.3e-47 161.3 0.0 1.4 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|282163527|ref|YP_003355912.1| - 1.9e-17 63.0 0.0 2.6e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|282163527|ref|YP_003355912.1| - 1.5e-06 27.4 0.0 1.6e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II OKR_DC_1 PF01276.15 gi|282163527|ref|YP_003355912.1| - 1.3e-05 23.9 0.0 4.7e-05 22.1 0.0 1.7 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain DegT_DnrJ_EryC1 PF01041.12 gi|282163527|ref|YP_003355912.1| - 0.00065 18.8 0.0 0.0013 17.8 0.0 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|282163527|ref|YP_003355912.1| - 0.0012 18.0 0.0 0.0015 17.7 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|282163527|ref|YP_003355912.1| - 0.0041 15.4 0.0 0.0068 14.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DAP_epimerase PF01678.14 gi|282163528|ref|YP_003355913.1| - 9e-59 196.6 0.5 3.6e-35 120.5 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|282163528|ref|YP_003355913.1| - 0.0019 17.0 0.5 0.15 10.8 0.0 2.1 2 0 0 2 2 2 2 Proline racemase Orn_Arg_deC_N PF02784.11 gi|282163529|ref|YP_003355914.1| - 1.9e-56 191.0 0.0 2.7e-56 190.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|282163529|ref|YP_003355914.1| - 5.5e-22 77.6 0.0 1e-21 76.7 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|282163529|ref|YP_003355914.1| - 1.4e-11 44.4 0.0 4.4e-11 42.7 0.0 1.7 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain S6PP PF05116.8 gi|282163529|ref|YP_003355914.1| - 0.0022 17.3 0.0 0.0045 16.3 0.0 1.5 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Tic22 PF04278.7 gi|282163529|ref|YP_003355914.1| - 0.033 13.4 0.0 0.076 12.2 0.0 1.6 2 0 0 2 2 2 0 Tic22-like family Aminotran_1_2 PF00155.16 gi|282163530|ref|YP_003355915.1| - 2.4e-54 184.6 0.0 2.7e-54 184.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|282163530|ref|YP_003355915.1| - 0.00093 17.5 0.1 0.002 16.5 0.1 1.5 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Methyltransf_6 PF03737.10 gi|282163531|ref|YP_003355916.1| - 3e-35 121.3 0.2 3e-35 121.3 0.2 1.8 2 0 0 2 2 2 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|282163531|ref|YP_003355916.1| - 2.2e-20 73.0 5.6 4e-20 72.1 3.9 1.5 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|282163531|ref|YP_003355916.1| - 7.7e-05 21.7 2.0 0.00026 20.0 0.5 2.2 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase HMGL-like PF00682.14 gi|282163531|ref|YP_003355916.1| - 0.00039 20.1 0.3 0.00079 19.1 0.1 1.5 1 1 0 1 1 1 1 HMGL-like ThiG PF05690.9 gi|282163531|ref|YP_003355916.1| - 0.0031 16.6 1.4 0.0074 15.3 0.9 1.6 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG PEP_mutase PF13714.1 gi|282163531|ref|YP_003355916.1| - 0.0047 16.1 2.2 0.017 14.3 0.6 2.2 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase IGPS PF00218.16 gi|282163531|ref|YP_003355916.1| - 0.016 14.3 1.0 0.026 13.5 0.7 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|282163531|ref|YP_003355916.1| - 0.022 13.5 11.3 0.038 12.8 7.2 1.7 1 1 0 1 1 1 0 FMN-dependent dehydrogenase PcrB PF01884.12 gi|282163531|ref|YP_003355916.1| - 0.044 13.0 7.5 0.04 13.1 1.3 2.6 1 1 1 3 3 3 0 PcrB family DeoC PF01791.4 gi|282163531|ref|YP_003355916.1| - 0.08 12.2 5.2 1.3 8.2 3.0 2.6 1 1 0 1 1 1 0 DeoC/LacD family aldolase Ribul_P_3_epim PF00834.14 gi|282163531|ref|YP_003355916.1| - 0.15 11.1 1.8 0.34 9.9 1.2 1.7 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.12 gi|282163531|ref|YP_003355916.1| - 0.59 9.2 7.1 6.4 5.8 0.9 3.0 1 1 2 3 3 3 0 Thiamine monophosphate synthase/TENI Transposase_mut PF00872.13 gi|282163532|ref|YP_003355917.1| - 1.4e-106 356.2 0.1 1.7e-106 356.0 0.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|282163532|ref|YP_003355917.1| - 5.2e-17 61.7 0.0 1.4e-16 60.3 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS240 PF13610.1 gi|282163532|ref|YP_003355917.1| - 2e-09 37.5 0.1 1.9e-06 27.9 0.1 2.7 1 1 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|282163532|ref|YP_003355917.1| - 1.4e-06 27.7 0.1 2.2e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_ISL3 PF01610.12 gi|282163532|ref|YP_003355917.1| - 0.00033 20.3 0.1 0.00057 19.5 0.1 1.5 1 0 0 1 1 1 1 Transposase HTH_32 PF13565.1 gi|282163532|ref|YP_003355917.1| - 0.047 14.4 0.3 0.2 12.4 0.0 2.2 2 1 0 2 2 2 0 Homeodomain-like domain Epimerase PF01370.16 gi|282163533|ref|YP_003355918.1| - 3.1e-63 213.3 0.0 3.8e-63 213.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|282163533|ref|YP_003355918.1| - 4.4e-22 78.0 0.0 5.7e-22 77.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|282163533|ref|YP_003355918.1| - 1.2e-19 70.3 0.3 2.1e-18 66.2 0.2 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|282163533|ref|YP_003355918.1| - 1.5e-19 69.9 0.0 1.7e-17 63.1 0.0 2.1 1 1 1 2 2 2 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|282163533|ref|YP_003355918.1| - 7.7e-18 64.3 0.0 1.4e-17 63.5 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|282163533|ref|YP_003355918.1| - 2.9e-17 63.2 0.0 3.8e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|282163533|ref|YP_003355918.1| - 4e-08 32.7 0.0 6.5e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|282163533|ref|YP_003355918.1| - 1.2e-06 28.4 0.0 2.4e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain adh_short PF00106.20 gi|282163533|ref|YP_003355918.1| - 4.3e-06 26.7 0.1 1.4e-05 25.0 0.1 1.8 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|282163533|ref|YP_003355918.1| - 2.3e-05 24.1 0.6 0.00055 19.6 0.4 2.3 1 1 0 1 1 1 1 KR domain Epimerase_Csub PF13950.1 gi|282163533|ref|YP_003355918.1| - 9.4e-05 22.2 0.0 0.00021 21.1 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit Saccharop_dh PF03435.13 gi|282163533|ref|YP_003355918.1| - 0.0051 15.8 0.0 0.0067 15.4 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|282163533|ref|YP_003355918.1| - 0.037 13.8 0.0 0.17 11.7 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ELFV_dehydrog PF00208.16 gi|282163533|ref|YP_003355918.1| - 0.04 13.4 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Glyco_transf_5 PF08323.6 gi|282163533|ref|YP_003355918.1| - 0.088 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Starch synthase catalytic domain NTP_transf_2 PF01909.18 gi|282163534|ref|YP_003355919.1| - 2.3e-08 34.2 0.2 2.5e-08 34.1 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain BolA PF01722.13 gi|282163534|ref|YP_003355919.1| - 0.06 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 BolA-like protein PDDEXK_3 PF13366.1 gi|282163535|ref|YP_003355920.1| - 2.4e-41 140.4 0.2 2.7e-41 140.3 0.2 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Tox-REase-7 PF15649.1 gi|282163535|ref|YP_003355920.1| - 0.0001 22.3 0.0 0.00015 21.8 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease fold toxin 7 Epimerase_2 PF02350.14 gi|282163536|ref|YP_003355921.1| - 1.5e-113 379.1 0.0 1.7e-113 378.8 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|282163536|ref|YP_003355921.1| - 0.0018 17.2 0.1 0.0062 15.4 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.1 gi|282163536|ref|YP_003355921.1| - 0.061 13.4 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain AIRS PF00586.19 gi|282163536|ref|YP_003355921.1| - 0.079 13.2 0.0 0.24 11.6 0.0 1.8 2 0 0 2 2 2 0 AIR synthase related protein, N-terminal domain DDE_Tnp_1 PF01609.16 gi|282163537|ref|YP_003355922.1| - 6.5e-23 81.3 1.7 9.8e-23 80.8 1.2 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|282163537|ref|YP_003355922.1| - 2.1e-08 33.9 0.2 4.4e-08 32.9 0.1 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|282163537|ref|YP_003355922.1| - 4.4e-06 26.5 0.0 8.6e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|282163537|ref|YP_003355922.1| - 0.001 19.0 0.1 0.0019 18.1 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain ABC_membrane PF00664.18 gi|282163538|ref|YP_003355923.1| - 2.2e-26 92.9 13.2 2.7e-26 92.5 9.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|282163539|ref|YP_003355924.1| - 1.8e-36 125.4 0.0 2.5e-36 125.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163539|ref|YP_003355924.1| - 3.5e-06 27.2 0.9 0.0061 16.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|282163539|ref|YP_003355924.1| - 1.8e-05 23.9 0.0 2.9e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|282163539|ref|YP_003355924.1| - 6.6e-05 22.2 0.2 0.0018 17.5 0.0 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|282163539|ref|YP_003355924.1| - 0.00031 21.5 0.1 0.00053 20.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|282163539|ref|YP_003355924.1| - 0.00076 19.5 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|282163539|ref|YP_003355924.1| - 0.00082 19.2 0.0 0.009 15.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|282163539|ref|YP_003355924.1| - 0.0017 17.8 0.0 0.0035 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|282163539|ref|YP_003355924.1| - 0.0045 17.2 0.0 0.0077 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|282163539|ref|YP_003355924.1| - 0.006 16.2 0.0 0.018 14.7 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|282163539|ref|YP_003355924.1| - 0.01 15.9 0.1 0.034 14.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_membrane PF00664.18 gi|282163539|ref|YP_003355924.1| - 0.011 15.1 2.9 0.017 14.5 2.0 1.3 1 0 0 1 1 1 0 ABC transporter transmembrane region AAA_5 PF07728.9 gi|282163539|ref|YP_003355924.1| - 0.012 15.3 0.0 0.032 13.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|282163539|ref|YP_003355924.1| - 0.017 15.0 0.7 0.033 14.1 0.5 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase IstB_IS21 PF01695.12 gi|282163539|ref|YP_003355924.1| - 0.026 13.9 0.2 0.49 9.7 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|282163539|ref|YP_003355924.1| - 0.027 14.6 0.0 0.062 13.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA PF00004.24 gi|282163539|ref|YP_003355924.1| - 0.046 13.9 0.0 0.13 12.4 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|282163539|ref|YP_003355924.1| - 0.054 12.8 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|282163539|ref|YP_003355924.1| - 0.081 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|282163539|ref|YP_003355924.1| - 0.086 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|282163539|ref|YP_003355924.1| - 0.1 12.1 0.0 0.15 11.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|282163539|ref|YP_003355924.1| - 0.11 11.1 0.2 0.18 10.3 0.0 1.4 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|282163539|ref|YP_003355924.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain Rad17 PF03215.10 gi|282163539|ref|YP_003355924.1| - 0.13 10.9 0.0 0.18 10.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF1616 PF07760.6 gi|282163540|ref|YP_003355925.1| - 1.3e-106 355.9 1.0 1.4e-106 355.8 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) 2TM PF13239.1 gi|282163541|ref|YP_003355926.1| - 0.21 11.6 0.6 0.41 10.7 0.4 1.4 1 0 0 1 1 1 0 2TM domain DUF58 PF01882.13 gi|282163542|ref|YP_003355927.1| - 8.1e-18 64.3 0.0 1.7e-17 63.3 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.6 gi|282163543|ref|YP_003355928.1| - 2e-59 198.8 0.1 3e-59 198.3 0.1 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|282163543|ref|YP_003355928.1| - 2.1e-13 50.2 0.0 4.9e-13 48.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|282163543|ref|YP_003355928.1| - 2.3e-07 29.9 0.0 1.5e-06 27.2 0.0 2.2 1 1 0 1 1 1 1 MCM2/3/5 family RuvB_N PF05496.7 gi|282163543|ref|YP_003355928.1| - 6.4e-06 25.3 0.0 1.7e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|282163543|ref|YP_003355928.1| - 1.6e-05 25.0 0.0 3.9e-05 23.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|282163543|ref|YP_003355928.1| - 0.0017 17.5 0.4 1.3 8.0 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|282163543|ref|YP_003355928.1| - 0.002 17.5 0.0 0.041 13.3 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|282163543|ref|YP_003355928.1| - 0.066 14.0 0.2 0.14 12.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|282163543|ref|YP_003355928.1| - 0.093 13.0 0.0 0.22 11.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF4350 PF14258.1 gi|282163544|ref|YP_003355929.1| - 2.5e-05 24.3 0.9 0.00013 22.0 0.0 2.6 2 2 1 3 3 3 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|282163544|ref|YP_003355929.1| - 0.0049 16.3 0.0 0.015 14.7 0.0 1.7 2 0 0 2 2 2 1 ABC-type uncharacterized transport system DUF4129 PF13559.1 gi|282163545|ref|YP_003355930.1| - 1.3e-06 28.2 0.0 2.6e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.1 gi|282163545|ref|YP_003355930.1| - 8.7e-06 25.7 7.7 0.13 12.2 0.7 3.6 3 0 0 3 3 3 3 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282163545|ref|YP_003355930.1| - 0.0032 17.4 0.3 18 5.4 0.0 3.7 3 0 0 3 3 3 2 Domain of unknown function (DUF4480) A2M_N PF01835.14 gi|282163545|ref|YP_003355930.1| - 0.064 13.5 0.0 1.5 9.1 0.0 2.6 2 0 0 2 2 2 0 MG2 domain Dioxygenase_C PF00775.16 gi|282163545|ref|YP_003355930.1| - 0.09 12.0 0.0 0.43 9.8 0.0 2.0 2 0 0 2 2 2 0 Dioxygenase Big_3_4 PF13754.1 gi|282163545|ref|YP_003355930.1| - 0.82 10.0 13.0 14 6.0 0.8 4.7 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 3) TraX PF05857.6 gi|282163546|ref|YP_003355931.1| - 0.0074 15.9 4.9 0.0075 15.9 3.4 1.0 1 0 0 1 1 1 1 TraX protein DUF373 PF04123.8 gi|282163546|ref|YP_003355931.1| - 2.5 7.0 7.8 2.9 6.8 5.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF485 PF04341.7 gi|282163546|ref|YP_003355931.1| - 2.5 7.8 7.9 0.2 11.3 1.7 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF485 PepSY_TM_2 PF13703.1 gi|282163546|ref|YP_003355931.1| - 3.8 7.7 7.4 2.3e+02 2.0 5.1 2.3 1 1 0 1 1 1 0 PepSY-associated TM helix DUF3040 PF11239.3 gi|282163546|ref|YP_003355931.1| - 4.8 7.2 11.1 0.3 11.1 1.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DUF4366 PF14283.1 gi|282163548|ref|YP_003355933.1| - 0.0033 16.8 0.2 1.8 7.9 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4366) YopE_N PF09020.5 gi|282163548|ref|YP_003355933.1| - 0.19 11.7 0.3 0.19 11.7 0.2 2.4 3 0 0 3 3 3 0 YopE, N terminal CarboxypepD_reg PF13620.1 gi|282163549|ref|YP_003355934.1| - 0.0071 16.3 0.3 0.0071 16.3 0.2 3.2 2 1 2 4 4 4 1 Carboxypeptidase regulatory-like domain Y_Y_Y PF07495.8 gi|282163549|ref|YP_003355934.1| - 0.097 12.4 0.0 0.28 10.9 0.0 1.8 1 0 0 1 1 1 0 Y_Y_Y domain ABC_tran PF00005.22 gi|282163550|ref|YP_003355935.1| - 7e-38 130.0 0.2 2e-37 128.5 0.0 1.9 2 0 0 2 2 1 1 ABC transporter ABC_membrane PF00664.18 gi|282163550|ref|YP_003355935.1| - 3.1e-37 128.4 18.2 5.7e-37 127.6 12.6 1.4 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|282163550|ref|YP_003355935.1| - 8.1e-07 29.2 5.4 2e-05 24.7 0.7 3.2 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|282163550|ref|YP_003355935.1| - 6.3e-06 25.5 1.5 0.00012 21.4 1.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|282163550|ref|YP_003355935.1| - 1.1e-05 24.6 0.0 2.9e-05 23.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|282163550|ref|YP_003355935.1| - 2.8e-05 24.9 0.1 6.3e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|282163550|ref|YP_003355935.1| - 7.1e-05 22.7 0.1 0.0047 16.8 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|282163550|ref|YP_003355935.1| - 0.0003 20.2 0.0 0.00079 18.9 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain cobW PF02492.14 gi|282163550|ref|YP_003355935.1| - 0.00088 18.7 0.2 0.0042 16.5 0.1 2.1 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|282163550|ref|YP_003355935.1| - 0.0025 16.9 0.0 0.0058 15.7 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|282163550|ref|YP_003355935.1| - 0.0032 17.1 0.4 0.092 12.4 0.0 2.7 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|282163550|ref|YP_003355935.1| - 0.0039 17.2 0.1 0.013 15.5 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|282163550|ref|YP_003355935.1| - 0.0045 17.2 0.0 0.013 15.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|282163550|ref|YP_003355935.1| - 0.0075 15.8 0.1 0.028 14.0 0.0 1.9 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|282163550|ref|YP_003355935.1| - 0.0086 15.9 0.0 0.025 14.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|282163550|ref|YP_003355935.1| - 0.018 14.7 0.0 0.049 13.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|282163550|ref|YP_003355935.1| - 0.018 14.5 0.0 0.04 13.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|282163550|ref|YP_003355935.1| - 0.03 14.4 0.0 0.097 12.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|282163550|ref|YP_003355935.1| - 0.036 13.4 0.0 0.078 12.4 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|282163550|ref|YP_003355935.1| - 0.041 14.1 0.2 0.097 12.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|282163550|ref|YP_003355935.1| - 0.052 13.4 0.7 0.15 11.9 0.5 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.24 gi|282163550|ref|YP_003355935.1| - 0.064 13.4 0.4 0.39 10.9 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|282163550|ref|YP_003355935.1| - 0.099 12.3 0.1 0.31 10.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|282163550|ref|YP_003355935.1| - 0.11 11.8 0.0 0.26 10.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain HCMV_UL139 PF12507.3 gi|282163550|ref|YP_003355935.1| - 0.14 12.3 0.1 0.26 11.4 0.1 1.4 1 0 0 1 1 1 0 Human Cytomegalovirus UL139 protein DDE_Tnp_1 PF01609.16 gi|282163551|ref|YP_003355936.1| - 1.8e-25 89.7 0.9 2.9e-25 89.0 0.7 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|282163551|ref|YP_003355936.1| - 1.2e-10 41.0 0.2 2.7e-10 40.0 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.1 gi|282163551|ref|YP_003355936.1| - 5e-05 23.3 0.2 9.4e-05 22.4 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|282163551|ref|YP_003355936.1| - 8.6e-05 22.3 0.2 0.00018 21.2 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain DUF4372 PF14294.1 gi|282163551|ref|YP_003355936.1| - 0.028 14.2 0.0 0.054 13.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4372) Peptidase_S24 PF00717.18 gi|282163552|ref|YP_003355937.1| - 9.5e-10 37.9 0.0 2.2e-09 36.8 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like Radical_SAM PF04055.16 gi|282163554|ref|YP_003355939.1| - 3e-22 79.5 0.0 4.4e-22 79.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|282163554|ref|YP_003355939.1| - 1.6e-10 41.0 0.0 4e-10 39.7 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|282163554|ref|YP_003355939.1| - 1.1e-09 38.5 0.0 3.3e-09 36.9 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain rRNA_processing PF08524.6 gi|282163554|ref|YP_003355939.1| - 0.17 11.6 0.0 0.28 10.9 0.0 1.2 1 0 0 1 1 1 0 rRNA processing Radical_SAM PF04055.16 gi|282163555|ref|YP_003355940.1| - 2.3e-21 76.6 0.1 4.1e-21 75.8 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|282163555|ref|YP_003355940.1| - 4.9e-10 39.6 0.1 2.2e-09 37.4 0.0 2.2 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|282163555|ref|YP_003355940.1| - 1e-08 35.4 0.1 2e-08 34.4 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|282163555|ref|YP_003355940.1| - 4.8e-06 26.6 0.1 9.5e-06 25.6 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-MYND PF01753.13 gi|282163555|ref|YP_003355940.1| - 3.9 7.4 7.2 0.73 9.7 0.8 2.4 2 0 0 2 2 2 0 MYND finger PqqD PF05402.7 gi|282163556|ref|YP_003355941.1| - 1.2e-15 57.2 0.0 1.5e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DDE_Tnp_1 PF01609.16 gi|282163557|ref|YP_003355942.1| - 1.1e-22 80.6 1.4 1.7e-22 80.0 1.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|282163557|ref|YP_003355942.1| - 1.2e-11 44.3 0.2 2.4e-11 43.3 0.2 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.1 gi|282163557|ref|YP_003355942.1| - 4.1e-05 23.5 0.2 8.6e-05 22.5 0.2 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|282163557|ref|YP_003355942.1| - 4.2e-05 23.3 0.1 9.1e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 Transposase DDE domain DUF4372 PF14294.1 gi|282163557|ref|YP_003355942.1| - 0.00063 19.5 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4372) NTP_transf_5 PF14907.1 gi|282163558|ref|YP_003355943.1| - 1.4e-48 165.4 1.8 1.7e-48 165.1 1.2 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase UDPG_MGDP_dh_N PF03721.9 gi|282163559|ref|YP_003355944.1| - 2.2e-34 118.4 0.0 3.6e-34 117.7 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|282163559|ref|YP_003355944.1| - 3.9e-20 71.9 0.0 1.1e-19 70.5 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|282163559|ref|YP_003355944.1| - 1.9e-19 69.6 0.0 5e-19 68.3 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain DUF2073 PF09846.4 gi|282163559|ref|YP_003355944.1| - 0.0031 17.1 0.1 0.0078 15.8 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) Semialdhyde_dh PF01118.19 gi|282163559|ref|YP_003355944.1| - 0.013 15.7 0.0 0.15 12.3 0.0 2.5 3 0 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|282163559|ref|YP_003355944.1| - 0.014 15.7 0.0 1.8 9.0 0.0 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Polysacc_synt PF01943.12 gi|282163560|ref|YP_003355945.1| - 1.3e-16 60.7 48.7 1.3e-16 60.7 33.7 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|282163560|ref|YP_003355945.1| - 4.7e-05 23.2 9.3 4.7e-05 23.2 6.5 4.2 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain PMT_2 PF13231.1 gi|282163561|ref|YP_003355946.1| - 5.4e-06 26.3 24.9 5.4e-06 26.3 17.3 4.7 2 1 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase TcdA_TcdB PF12919.2 gi|282163561|ref|YP_003355946.1| - 0.059 11.8 0.3 0.092 11.2 0.2 1.2 1 0 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain Glycos_transf_1 PF00534.15 gi|282163562|ref|YP_003355947.1| - 5.8e-32 110.4 0.0 1.9e-31 108.7 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282163562|ref|YP_003355947.1| - 2.8e-15 56.6 0.0 4.7e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|282163562|ref|YP_003355947.1| - 2.7e-11 43.5 0.0 5.1e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282163562|ref|YP_003355947.1| - 1.4e-09 37.9 0.0 2.4e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|282163562|ref|YP_003355947.1| - 0.0052 16.9 0.0 0.0078 16.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycogen_syn PF05693.8 gi|282163562|ref|YP_003355947.1| - 0.0056 14.9 0.0 0.36 9.0 0.0 2.2 2 0 0 2 2 2 2 Glycogen synthase Glycos_transf_1 PF00534.15 gi|282163563|ref|YP_003355948.1| - 4.7e-46 156.3 0.3 8.3e-46 155.5 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282163563|ref|YP_003355948.1| - 5.9e-25 87.9 0.0 9.2e-25 87.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|282163563|ref|YP_003355948.1| - 5.2e-07 29.5 4.7 2.3e-06 27.4 3.3 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|282163563|ref|YP_003355948.1| - 6.5e-07 29.5 0.0 1.2e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282163563|ref|YP_003355948.1| - 1e-06 28.6 0.0 4.3e-06 26.5 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|282163563|ref|YP_003355948.1| - 0.00019 21.6 0.0 0.00028 21.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_20 PF00982.16 gi|282163563|ref|YP_003355948.1| - 0.026 13.0 0.1 0.05 12.0 0.0 1.4 1 1 0 1 1 1 0 Glycosyltransferase family 20 Glycos_transf_2 PF00535.21 gi|282163564|ref|YP_003355949.1| - 6e-30 104.1 2.2 4e-23 81.9 0.0 2.9 3 0 0 3 3 3 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282163564|ref|YP_003355949.1| - 1.4e-06 28.3 0.0 5.4e-06 26.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 VMA21 PF09446.5 gi|282163564|ref|YP_003355949.1| - 0.0024 17.7 4.7 0.0059 16.5 3.3 1.6 1 0 0 1 1 1 1 VMA21-like domain Glyco_tranf_2_4 PF13704.1 gi|282163564|ref|YP_003355949.1| - 0.051 13.9 0.0 0.24 11.7 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase family 2 GFO_IDH_MocA PF01408.17 gi|282163565|ref|YP_003355950.1| - 1.3e-28 99.8 0.1 1.1e-27 96.8 0.1 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|282163565|ref|YP_003355950.1| - 2.1e-09 37.1 0.0 3.6e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain DapB_N PF01113.15 gi|282163565|ref|YP_003355950.1| - 3e-05 23.9 0.2 0.00018 21.3 0.0 2.2 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|282163565|ref|YP_003355950.1| - 0.0002 21.6 0.1 0.00079 19.7 0.0 2.0 1 1 1 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|282163565|ref|YP_003355950.1| - 0.00037 19.3 0.0 0.00063 18.6 0.0 1.7 2 1 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family UDPG_MGDP_dh_N PF03721.9 gi|282163565|ref|YP_003355950.1| - 0.0046 16.3 0.2 0.014 14.8 0.1 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|282163565|ref|YP_003355950.1| - 0.0047 16.0 0.0 0.0087 15.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|282163565|ref|YP_003355950.1| - 0.0085 15.9 0.4 0.039 13.7 0.1 2.0 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.19 gi|282163565|ref|YP_003355950.1| - 0.027 14.4 0.2 0.07 13.0 0.1 1.7 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|282163565|ref|YP_003355950.1| - 0.028 14.4 0.1 0.073 13.1 0.0 1.7 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|282163565|ref|YP_003355950.1| - 0.031 14.6 0.1 0.063 13.7 0.1 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|282163565|ref|YP_003355950.1| - 0.048 12.6 0.1 0.077 11.9 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase DegT_DnrJ_EryC1 PF01041.12 gi|282163566|ref|YP_003355951.1| - 9.6e-135 449.2 0.0 1.1e-134 449.1 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|282163566|ref|YP_003355951.1| - 8.9e-10 38.1 0.2 2.9e-09 36.5 0.2 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|282163566|ref|YP_003355951.1| - 3.9e-09 35.2 0.1 5.5e-09 34.8 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|282163566|ref|YP_003355951.1| - 1.6e-08 33.9 0.2 9.3e-08 31.3 0.1 2.2 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|282163566|ref|YP_003355951.1| - 0.00082 18.2 0.1 0.0037 16.0 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Hexapep PF00132.19 gi|282163567|ref|YP_003355952.1| - 3.5e-31 105.3 33.0 9.1e-10 37.6 1.6 4.0 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|282163567|ref|YP_003355952.1| - 2.4e-18 65.3 11.9 2.8e-08 33.1 0.7 4.2 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase ParBc PF02195.13 gi|282163568|ref|YP_003355953.1| - 2.8e-14 52.9 0.5 9.4e-14 51.2 0.3 2.0 1 0 0 1 1 1 1 ParB-like nuclease domain HisKA PF00512.20 gi|282163568|ref|YP_003355953.1| - 0.031 14.2 3.1 0.92 9.5 0.0 3.4 3 1 1 4 4 4 0 His Kinase A (phospho-acceptor) domain MutS_II PF05188.12 gi|282163568|ref|YP_003355953.1| - 0.11 12.5 1.1 2.3 8.2 0.0 2.5 2 1 0 2 2 2 0 MutS domain II DUF4362 PF14275.1 gi|282163568|ref|YP_003355953.1| - 0.26 11.3 0.2 0.26 11.3 0.1 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4362) DUF4061 PF13270.1 gi|282163568|ref|YP_003355953.1| - 0.59 10.2 5.6 1.6 8.8 0.8 3.4 3 1 1 4 4 4 0 Domain of unknown function (DUF4061) DUF1451 PF07295.6 gi|282163568|ref|YP_003355953.1| - 5.5 6.7 8.4 3.2 7.5 0.9 3.1 3 1 1 4 4 4 0 Protein of unknown function (DUF1451) DUF457 PF04307.9 gi|282163569|ref|YP_003355954.1| - 2.3e-16 59.5 5.6 2.8e-16 59.2 3.9 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Abhydrolase_6 PF12697.2 gi|282163571|ref|YP_003355956.1| - 1.2e-42 146.3 0.3 1.4e-42 146.1 0.2 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|282163571|ref|YP_003355956.1| - 1.9e-29 102.8 0.0 2.3e-20 73.1 0.1 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|282163571|ref|YP_003355956.1| - 9.1e-19 67.6 0.0 3.4e-18 65.7 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|282163571|ref|YP_003355956.1| - 2.1e-06 26.4 0.0 2.6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Ndr family Abhydrolase_2 PF02230.11 gi|282163571|ref|YP_003355956.1| - 0.0025 17.2 0.0 1 8.7 0.0 2.4 2 1 0 2 2 2 2 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.5 gi|282163571|ref|YP_003355956.1| - 0.0074 16.1 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein DUF2048 PF09752.4 gi|282163571|ref|YP_003355956.1| - 0.0085 15.0 0.0 0.0096 14.8 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2048) Esterase PF00756.15 gi|282163571|ref|YP_003355956.1| - 0.009 15.4 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Abhydrolase_3 PF07859.8 gi|282163571|ref|YP_003355956.1| - 0.019 14.5 0.0 0.042 13.4 0.0 1.7 1 1 0 1 1 1 0 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|282163571|ref|YP_003355956.1| - 0.026 14.2 0.0 0.1 12.3 0.0 1.8 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal FSH1 PF03959.8 gi|282163571|ref|YP_003355956.1| - 0.026 13.9 0.0 0.092 12.1 0.0 1.9 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Thioesterase PF00975.15 gi|282163571|ref|YP_003355956.1| - 0.039 14.1 0.0 0.057 13.6 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain Peptidase_S9 PF00326.16 gi|282163571|ref|YP_003355956.1| - 0.041 13.0 0.0 6.8 5.8 0.0 2.5 2 1 0 2 2 2 0 Prolyl oligopeptidase family DUF915 PF06028.6 gi|282163571|ref|YP_003355956.1| - 0.05 12.6 0.0 2.2 7.3 0.0 2.4 3 0 0 3 3 3 0 Alpha/beta hydrolase of unknown function (DUF915) DLH PF01738.13 gi|282163571|ref|YP_003355956.1| - 0.05 12.8 0.0 2.5 7.3 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family Sugar-bind PF04198.8 gi|282163571|ref|YP_003355956.1| - 0.12 11.2 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain Methyltransf_11 PF08241.7 gi|282163572|ref|YP_003355957.1| - 3.2e-23 82.0 0.0 7.7e-23 80.8 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282163572|ref|YP_003355957.1| - 4.3e-23 81.6 0.0 7.7e-23 80.8 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|282163572|ref|YP_003355957.1| - 4.8e-23 81.4 0.0 7.6e-23 80.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282163572|ref|YP_003355957.1| - 2.4e-18 66.3 0.0 4.1e-18 65.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282163572|ref|YP_003355957.1| - 3e-18 66.0 0.0 5.6e-18 65.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282163572|ref|YP_003355957.1| - 2.2e-14 54.0 0.0 4.3e-14 53.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282163572|ref|YP_003355957.1| - 5.7e-11 42.6 0.0 1.6e-10 41.2 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|282163572|ref|YP_003355957.1| - 4.8e-10 39.0 0.0 7.8e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|282163572|ref|YP_003355957.1| - 6.8e-10 38.9 0.0 1.5e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|282163572|ref|YP_003355957.1| - 7.6e-10 38.3 0.0 1.1e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|282163572|ref|YP_003355957.1| - 1.3e-08 34.6 0.0 2.6e-08 33.6 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|282163572|ref|YP_003355957.1| - 1.6e-06 27.5 0.0 0.00048 19.3 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|282163572|ref|YP_003355957.1| - 1.7e-05 24.5 0.0 0.00044 19.9 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase GCD14 PF08704.5 gi|282163572|ref|YP_003355957.1| - 2.7e-05 23.8 0.0 4.6e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit MetW PF07021.7 gi|282163572|ref|YP_003355957.1| - 0.00013 21.4 0.0 0.00028 20.2 0.0 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_4 PF02390.12 gi|282163572|ref|YP_003355957.1| - 0.00024 20.2 0.0 0.0016 17.5 0.0 2.0 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_32 PF13679.1 gi|282163572|ref|YP_003355957.1| - 0.0013 18.4 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|282163572|ref|YP_003355957.1| - 0.0032 18.2 0.0 0.11 13.3 0.0 2.3 1 1 1 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|282163572|ref|YP_003355957.1| - 0.0039 17.2 0.0 0.045 13.7 0.0 2.1 2 0 0 2 2 2 1 FtsJ-like methyltransferase Methyltransf_9 PF08003.6 gi|282163572|ref|YP_003355957.1| - 0.013 14.2 0.0 0.02 13.6 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) RrnaAD PF00398.15 gi|282163572|ref|YP_003355957.1| - 0.022 13.7 0.0 0.038 13.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DOT1 PF08123.8 gi|282163572|ref|YP_003355957.1| - 0.022 14.0 0.0 0.038 13.2 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 TehB PF03848.9 gi|282163572|ref|YP_003355957.1| - 0.024 13.7 0.0 0.042 13.0 0.0 1.5 1 0 0 1 1 1 0 Tellurite resistance protein TehB FmrO PF07091.6 gi|282163572|ref|YP_003355957.1| - 0.025 13.5 0.0 0.041 12.8 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Fibrillarin PF01269.12 gi|282163572|ref|YP_003355957.1| - 0.037 12.9 0.0 0.062 12.2 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin N6_N4_Mtase PF01555.13 gi|282163572|ref|YP_003355957.1| - 0.07 12.5 0.0 9.5 5.6 0.0 2.2 2 0 0 2 2 2 0 DNA methylase DUF3419 PF11899.3 gi|282163572|ref|YP_003355957.1| - 0.1 11.2 0.0 2.7 6.6 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3419) HEPN PF05168.9 gi|282163572|ref|YP_003355957.1| - 0.11 12.3 0.2 11 5.9 0.1 3.0 3 0 0 3 3 3 0 HEPN domain Oxidored_nitro PF00148.14 gi|282163573|ref|YP_003355958.1| - 4.4e-76 256.0 0.0 8e-76 255.2 0.0 1.4 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|282163574|ref|YP_003355959.1| - 6.9e-75 252.1 0.0 7.8e-75 251.9 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Peripla_BP_2 PF01497.13 gi|282163574|ref|YP_003355959.1| - 0.009 15.1 0.2 1.9 7.5 0.0 2.2 1 1 0 2 2 2 2 Periplasmic binding protein Fer4_NifH PF00142.13 gi|282163575|ref|YP_003355960.1| - 1.3e-92 309.8 0.1 1.6e-92 309.5 0.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|282163575|ref|YP_003355960.1| - 1.3e-08 34.4 0.0 2.6e-08 33.5 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|282163575|ref|YP_003355960.1| - 0.00025 20.2 0.0 0.00066 18.8 0.0 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|282163575|ref|YP_003355960.1| - 0.0014 18.6 0.0 0.0024 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|282163575|ref|YP_003355960.1| - 0.0015 17.4 0.1 0.05 12.4 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.1 gi|282163575|ref|YP_003355960.1| - 0.0018 18.3 0.0 0.0051 16.8 0.0 1.8 2 1 0 2 2 2 1 AAA ATPase domain ArgK PF03308.11 gi|282163575|ref|YP_003355960.1| - 0.0086 14.8 0.0 0.013 14.2 0.0 1.3 1 0 0 1 1 1 1 ArgK protein MipZ PF09140.6 gi|282163575|ref|YP_003355960.1| - 0.011 14.7 0.0 0.022 13.8 0.0 1.5 1 0 0 1 1 1 0 ATPase MipZ RNA_helicase PF00910.17 gi|282163575|ref|YP_003355960.1| - 0.018 15.2 0.0 0.041 14.0 0.0 1.7 2 0 0 2 2 1 0 RNA helicase NTPase_1 PF03266.10 gi|282163575|ref|YP_003355960.1| - 0.019 14.7 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_17 PF13207.1 gi|282163575|ref|YP_003355960.1| - 0.019 15.7 0.5 0.044 14.6 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|282163575|ref|YP_003355960.1| - 0.029 13.7 0.0 0.067 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|282163575|ref|YP_003355960.1| - 0.033 13.6 0.0 0.087 12.2 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain APS_kinase PF01583.15 gi|282163575|ref|YP_003355960.1| - 0.04 13.5 0.0 0.099 12.3 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_22 PF13401.1 gi|282163575|ref|YP_003355960.1| - 0.059 13.5 0.0 0.63 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|282163575|ref|YP_003355960.1| - 0.063 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) LytR_C PF13399.1 gi|282163575|ref|YP_003355960.1| - 0.064 13.6 0.0 0.28 11.5 0.0 1.9 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator CPSase_L_chain PF00289.17 gi|282163575|ref|YP_003355960.1| - 0.075 13.1 0.0 1.3 9.1 0.0 2.4 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain AAA_18 PF13238.1 gi|282163575|ref|YP_003355960.1| - 0.094 13.0 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|282163575|ref|YP_003355960.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|282163575|ref|YP_003355960.1| - 0.12 12.6 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 ABC transporter DUF4097 PF13349.1 gi|282163576|ref|YP_003355961.1| - 2.7e-12 46.5 5.5 2.7e-12 46.5 3.8 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4097) DUF4098 PF13345.1 gi|282163576|ref|YP_003355961.1| - 5e-12 45.5 20.3 2.4e-09 36.9 6.3 3.5 2 2 1 3 3 3 3 Domain of unknown function (DUF4098) CUB_2 PF02408.15 gi|282163576|ref|YP_003355961.1| - 0.0062 16.0 0.3 0.042 13.3 0.1 2.2 1 1 1 2 2 2 1 CUB-like domain CUE PF02845.11 gi|282163576|ref|YP_003355961.1| - 0.034 13.6 0.5 3.7 7.1 0.0 3.5 3 0 0 3 3 3 0 CUE domain BetaGal_dom2 PF10435.4 gi|282163576|ref|YP_003355961.1| - 0.035 13.4 2.3 0.44 9.8 0.1 3.1 2 1 1 3 3 3 0 Beta-galactosidase, domain 2 Bactofilin PF04519.8 gi|282163576|ref|YP_003355961.1| - 0.085 12.8 2.1 5.7 7.0 0.0 2.6 2 1 0 2 2 2 0 Polymer-forming cytoskeletal BBS2_Mid PF14783.1 gi|282163576|ref|YP_003355961.1| - 0.26 11.0 2.8 0.5 10.1 0.5 2.4 2 1 1 3 3 3 0 Ciliary BBSome complex subunit 2, middle region His_biosynth PF00977.16 gi|282163577|ref|YP_003355962.1| - 1.1e-73 247.3 3.5 1.2e-73 247.1 2.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|282163577|ref|YP_003355962.1| - 2.2e-09 36.5 0.1 3.4e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|282163577|ref|YP_003355962.1| - 5.1e-07 29.1 0.3 2.8e-06 26.7 0.1 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|282163577|ref|YP_003355962.1| - 1.6e-06 27.3 1.0 7.9e-06 25.0 0.1 2.1 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|282163577|ref|YP_003355962.1| - 2.8e-06 26.7 2.3 0.0041 16.4 0.1 2.2 2 0 0 2 2 2 2 PcrB family Trp_syntA PF00290.15 gi|282163577|ref|YP_003355962.1| - 3.1e-06 25.9 1.0 0.0049 15.4 0.2 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain ThiG PF05690.9 gi|282163577|ref|YP_003355962.1| - 9.5e-06 24.8 0.6 0.017 14.2 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|282163577|ref|YP_003355962.1| - 1.4e-05 24.1 1.6 0.012 14.5 0.2 2.6 1 1 2 3 3 3 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|282163577|ref|YP_003355962.1| - 3.6e-05 22.9 0.7 0.00046 19.3 0.2 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI PEP_mutase PF13714.1 gi|282163577|ref|YP_003355962.1| - 4.9e-05 22.6 0.1 0.16 11.1 0.0 2.7 2 1 1 3 3 3 2 Phosphoenolpyruvate phosphomutase IGPS PF00218.16 gi|282163577|ref|YP_003355962.1| - 0.00012 21.2 0.1 0.0013 17.8 0.0 2.1 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase G3P_antiterm PF04309.7 gi|282163577|ref|YP_003355962.1| - 0.00039 19.5 0.3 0.037 13.0 0.1 2.3 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.13 gi|282163577|ref|YP_003355962.1| - 0.0012 17.7 0.6 0.0054 15.6 0.0 1.9 2 0 0 2 2 2 1 FMN-dependent dehydrogenase DUF561 PF04481.7 gi|282163577|ref|YP_003355962.1| - 0.0016 17.3 1.8 0.0024 16.8 1.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF561) IMPDH PF00478.20 gi|282163577|ref|YP_003355962.1| - 0.0035 16.2 4.4 0.013 14.4 0.6 2.2 2 1 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.14 gi|282163577|ref|YP_003355962.1| - 0.0088 15.1 0.4 2.6 7.1 0.0 2.4 2 0 0 2 2 2 2 Ribulose-phosphate 3 epimerase family DegV PF02645.11 gi|282163577|ref|YP_003355962.1| - 0.034 13.2 0.0 0.052 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein, DegV family COG1307 DUF488 PF04343.8 gi|282163578|ref|YP_003355963.1| - 1.3e-29 103.0 1.3 1.4e-29 102.9 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 Acid_phosphat_B PF03767.9 gi|282163578|ref|YP_003355963.1| - 0.045 13.1 0.3 0.059 12.7 0.2 1.1 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) MazG PF03819.12 gi|282163579|ref|YP_003355964.1| - 2.7e-06 27.2 0.1 4.3e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|282163579|ref|YP_003355964.1| - 0.00036 20.7 0.4 0.00048 20.3 0.2 1.5 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase RDD PF06271.7 gi|282163580|ref|YP_003355965.1| - 3.6e-10 39.8 13.3 6.8e-10 38.9 9.2 1.5 1 1 0 1 1 1 1 RDD family DUF4339 PF14237.1 gi|282163580|ref|YP_003355965.1| - 2.4e-09 36.6 0.1 4.1e-09 35.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4339) CarboxypepD_reg PF13620.1 gi|282163581|ref|YP_003355966.1| - 0.00052 20.0 4.0 0.00066 19.6 0.6 2.3 1 1 1 2 2 2 1 Carboxypeptidase regulatory-like domain FlgD_ig PF13860.1 gi|282163581|ref|YP_003355966.1| - 0.0056 16.3 0.2 0.28 10.9 0.0 2.5 2 1 0 2 2 2 1 FlgD Ig-like domain DUF4480 PF13715.1 gi|282163581|ref|YP_003355966.1| - 0.022 14.7 0.7 0.049 13.6 0.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4480) DUF1180 PF06679.7 gi|282163581|ref|YP_003355966.1| - 0.03 14.1 4.9 0.054 13.3 3.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) fn3_3 PF14686.1 gi|282163581|ref|YP_003355966.1| - 0.055 13.5 0.1 0.076 13.1 0.1 1.3 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain II DUF4251 PF14059.1 gi|282163581|ref|YP_003355966.1| - 0.15 11.8 2.9 0.61 9.9 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4251) MarC PF01914.12 gi|282163581|ref|YP_003355966.1| - 1.8 7.6 4.8 2.5 7.1 3.3 1.2 1 0 0 1 1 1 0 MarC family integral membrane protein Flavodoxin_5 PF12724.2 gi|282163582|ref|YP_003355967.1| - 7.2e-10 39.0 0.1 2.3e-05 24.4 0.0 2.3 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_2 PF02525.12 gi|282163582|ref|YP_003355967.1| - 5.8e-06 25.9 0.5 2.9e-05 23.6 0.4 1.9 1 1 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|282163582|ref|YP_003355967.1| - 5.2e-05 22.8 0.7 9.3e-05 21.9 0.5 1.5 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.2 gi|282163582|ref|YP_003355967.1| - 0.00091 18.6 0.0 0.022 14.1 0.0 2.0 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|282163582|ref|YP_003355967.1| - 0.0011 18.9 0.1 0.004 17.1 0.0 1.9 1 1 0 1 1 1 1 Flavodoxin Transposase_mut PF00872.13 gi|282163583|ref|YP_003355968.1| - 3.5e-106 354.9 0.0 4.3e-106 354.6 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|282163583|ref|YP_003355968.1| - 3.5e-15 55.9 0.1 1.3e-14 54.1 0.0 1.9 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|282163583|ref|YP_003355968.1| - 7.3e-07 28.6 0.0 2.3e-06 27.0 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.1 gi|282163583|ref|YP_003355968.1| - 3.4e-06 27.0 0.0 0.0099 15.8 0.0 2.6 2 0 0 2 2 2 2 DDE domain DDE_Tnp_ISL3 PF01610.12 gi|282163583|ref|YP_003355968.1| - 0.0004 20.0 0.1 0.0011 18.6 0.0 1.8 1 1 1 2 2 2 1 Transposase HTH_29 PF13551.1 gi|282163583|ref|YP_003355968.1| - 0.049 13.7 0.3 0.2 11.8 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix DsrH PF04077.7 gi|282163583|ref|YP_003355968.1| - 0.055 13.1 0.0 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 DsrH like protein Flavodoxin_5 PF12724.2 gi|282163584|ref|YP_003355969.1| - 9.4e-28 97.0 0.2 1.1e-27 96.7 0.1 1.0 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|282163584|ref|YP_003355969.1| - 6.4e-10 39.2 0.6 2.1e-09 37.5 0.1 1.9 1 1 0 2 2 2 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|282163584|ref|YP_003355969.1| - 1.2e-09 37.7 0.0 1.9e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|282163584|ref|YP_003355969.1| - 4.9e-06 25.9 0.2 0.049 13.0 0.0 2.3 1 1 1 2 2 2 2 Flavodoxin PTS_IIB PF02302.12 gi|282163584|ref|YP_003355969.1| - 9.8e-05 22.7 0.1 0.06 13.8 0.0 2.2 2 0 0 2 2 2 2 PTS system, Lactose/Cellobiose specific IIB subunit PS_pyruv_trans PF04230.8 gi|282163584|ref|YP_003355969.1| - 0.004 16.8 0.0 0.0061 16.3 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase LMWPc PF01451.16 gi|282163584|ref|YP_003355969.1| - 0.0056 17.0 0.1 0.22 11.8 0.0 2.2 2 0 0 2 2 2 1 Low molecular weight phosphotyrosine protein phosphatase FMN_red PF03358.10 gi|282163584|ref|YP_003355969.1| - 0.057 12.9 0.1 0.7 9.3 0.0 2.1 1 1 1 2 2 2 0 NADPH-dependent FMN reductase TetR_N PF00440.18 gi|282163585|ref|YP_003355970.1| - 1.1e-18 66.6 1.4 2e-18 65.7 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.7 gi|282163585|ref|YP_003355970.1| - 0.0026 17.1 0.1 0.027 13.9 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|282163585|ref|YP_003355970.1| - 0.011 15.3 0.0 0.035 13.7 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.1 gi|282163585|ref|YP_003355970.1| - 0.014 14.7 0.1 0.26 10.7 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|282163585|ref|YP_003355970.1| - 0.022 14.3 0.0 0.046 13.2 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MS_channel PF00924.13 gi|282163586|ref|YP_003355971.1| - 4.6e-15 55.5 3.8 4.6e-15 55.5 2.7 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel Colicin_V PF02674.11 gi|282163586|ref|YP_003355971.1| - 0.00058 19.7 9.9 0.012 15.4 5.3 2.5 1 1 1 2 2 2 2 Colicin V production protein TM_helix PF05552.7 gi|282163586|ref|YP_003355971.1| - 0.017 14.7 0.6 0.017 14.7 0.4 4.7 4 1 0 5 5 5 0 Conserved TM helix DUF373 PF04123.8 gi|282163586|ref|YP_003355971.1| - 0.022 13.7 6.0 0.026 13.5 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) MscS_TM PF12794.2 gi|282163586|ref|YP_003355971.1| - 0.065 11.8 4.9 0.03 12.9 0.8 1.8 1 1 1 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 DUF4271 PF14093.1 gi|282163586|ref|YP_003355971.1| - 0.093 12.3 4.3 0.19 11.3 3.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4271) Tic20 PF09685.5 gi|282163586|ref|YP_003355971.1| - 0.28 11.1 14.3 2.1 8.3 3.4 2.7 1 1 1 2 2 2 0 Tic20-like protein YiaAB PF05360.9 gi|282163586|ref|YP_003355971.1| - 0.52 9.8 0.1 0.52 9.8 0.1 3.5 3 1 1 4 4 4 0 yiaA/B two helix domain Peptidase_M50 PF02163.17 gi|282163586|ref|YP_003355971.1| - 1.2 8.0 4.7 3.9 6.3 3.3 2.0 1 1 0 1 1 1 0 Peptidase family M50 DUF95 PF01944.12 gi|282163586|ref|YP_003355971.1| - 1.9 8.0 9.8 2 8.0 4.0 2.1 2 0 0 2 2 2 0 Integral membrane protein DUF95 DUF2975 PF11188.3 gi|282163586|ref|YP_003355971.1| - 9.3 5.9 12.0 5.7 6.6 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2975) MS_channel PF00924.13 gi|282163587|ref|YP_003355972.1| - 1.2e-28 99.9 0.1 1.3e-28 99.7 0.0 1.0 1 0 0 1 1 1 1 Mechanosensitive ion channel UDG PF03167.14 gi|282163588|ref|YP_003355973.1| - 7.1e-41 139.2 0.0 8.6e-41 138.9 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF2070 PF09843.4 gi|282163589|ref|YP_003355974.1| - 1.9e-49 167.5 0.8 3e-49 166.9 0.2 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2070) DUF555 PF04475.7 gi|282163590|ref|YP_003355975.1| - 1.2e-51 172.8 0.2 1.4e-51 172.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zf-ribbon_3 PF13248.1 gi|282163590|ref|YP_003355975.1| - 0.00069 18.7 0.6 0.0011 18.0 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|282163590|ref|YP_003355975.1| - 0.0013 18.1 0.3 0.002 17.5 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|282163590|ref|YP_003355975.1| - 0.035 13.8 0.2 0.058 13.1 0.2 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Dodecin PF07311.7 gi|282163590|ref|YP_003355975.1| - 0.058 13.4 0.4 0.2 11.6 0.0 2.0 2 1 1 3 3 3 0 Dodecin BON PF04972.12 gi|282163590|ref|YP_003355975.1| - 0.072 12.8 0.7 2.6 7.8 0.2 2.2 2 0 0 2 2 2 0 BON domain DUF3090 PF11290.3 gi|282163590|ref|YP_003355975.1| - 0.11 11.9 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3090) DUF357 PF04010.8 gi|282163591|ref|YP_003355976.1| - 1.1e-28 98.7 0.1 1.3e-28 98.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF87 PF01935.12 gi|282163592|ref|YP_003355977.1| - 4.5e-40 137.8 0.0 7.6e-40 137.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|282163592|ref|YP_003355977.1| - 5.5e-21 75.2 0.0 1.4e-19 70.6 0.0 2.1 1 1 0 1 1 1 1 AAA-like domain HAS-barrel PF09378.5 gi|282163592|ref|YP_003355977.1| - 1.1e-07 31.6 0.4 2.7e-07 30.3 0.0 1.9 2 0 0 2 2 2 1 HAS barrel domain FtsK_SpoIIIE PF01580.13 gi|282163592|ref|YP_003355977.1| - 3.8e-06 26.5 0.0 0.00068 19.1 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|282163592|ref|YP_003355977.1| - 4.2e-06 25.6 0.0 0.00035 19.3 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|282163592|ref|YP_003355977.1| - 9.6e-06 24.2 0.0 0.053 11.8 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|282163592|ref|YP_003355977.1| - 0.011 15.1 0.0 0.065 12.6 0.0 2.1 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA PF00004.24 gi|282163592|ref|YP_003355977.1| - 0.028 14.6 0.0 0.57 10.3 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|282163592|ref|YP_003355977.1| - 0.17 11.7 0.0 0.43 10.3 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF3325 PF11804.3 gi|282163593|ref|YP_003355978.1| - 0.27 11.2 4.3 0.49 10.3 3.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) TP_methylase PF00590.15 gi|282163594|ref|YP_003355979.1| - 5.7e-18 65.3 0.0 7.2e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Met_10 PF02475.11 gi|282163595|ref|YP_003355980.1| - 1.6e-62 210.6 0.2 2.4e-62 210.1 0.2 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|282163595|ref|YP_003355980.1| - 8.2e-08 32.8 0.0 2.2e-07 31.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|282163595|ref|YP_003355980.1| - 1.5e-07 30.9 0.0 2.3e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|282163595|ref|YP_003355980.1| - 3.7e-07 30.1 0.0 6.8e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|282163595|ref|YP_003355980.1| - 5.3e-07 29.2 0.0 8.5e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|282163595|ref|YP_003355980.1| - 4.2e-06 26.4 0.0 7.4e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|282163595|ref|YP_003355980.1| - 6.7e-06 25.3 0.0 1.1e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|282163595|ref|YP_003355980.1| - 1.5e-05 24.2 0.0 2.3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|282163595|ref|YP_003355980.1| - 0.00019 21.0 0.0 0.00031 20.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.1 gi|282163595|ref|YP_003355980.1| - 0.00056 20.2 0.0 0.00098 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PRMT5 PF05185.11 gi|282163595|ref|YP_003355980.1| - 0.0042 16.0 0.0 0.0061 15.5 0.0 1.1 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase TRM PF02005.11 gi|282163595|ref|YP_003355980.1| - 0.0067 15.4 0.0 0.0081 15.1 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase tRNA_U5-meth_tr PF05958.6 gi|282163595|ref|YP_003355980.1| - 0.012 14.3 0.0 0.018 13.7 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_16 PF10294.4 gi|282163595|ref|YP_003355980.1| - 0.1 12.0 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Ceramidase PF05875.7 gi|282163596|ref|YP_003355981.1| - 0.058 12.5 2.9 0.074 12.1 2.0 1.1 1 0 0 1 1 1 0 Ceramidase Nramp PF01566.13 gi|282163596|ref|YP_003355981.1| - 0.25 10.1 8.7 0.28 9.9 6.0 1.1 1 0 0 1 1 1 0 Natural resistance-associated macrophage protein DUF373 PF04123.8 gi|282163596|ref|YP_003355981.1| - 0.65 8.9 7.1 0.15 11.0 2.7 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Lactonase PF10282.4 gi|282163597|ref|YP_003355982.1| - 9.6e-20 70.9 1.0 1.4e-06 27.6 0.0 5.2 1 1 3 4 4 4 4 Lactonase, 7-bladed beta-propeller SGL PF08450.7 gi|282163597|ref|YP_003355982.1| - 5.9e-07 29.1 10.1 0.29 10.4 0.3 5.0 1 1 4 5 5 5 5 SMP-30/Gluconolaconase/LRE-like region Cytochrom_D1 PF02239.11 gi|282163597|ref|YP_003355982.1| - 9.1e-07 27.4 0.7 0.062 11.5 0.0 3.0 1 1 1 3 3 3 3 Cytochrome D1 heme domain SBP56 PF05694.6 gi|282163597|ref|YP_003355982.1| - 2.9e-06 26.0 0.1 0.82 8.0 0.0 4.2 2 1 2 4 4 4 2 56kDa selenium binding protein (SBP56) PLRV_ORF5 PF01690.12 gi|282163597|ref|YP_003355982.1| - 0.014 14.5 13.2 0.014 14.5 9.2 2.5 3 0 0 3 3 3 0 Potato leaf roll virus readthrough protein NHL PF01436.16 gi|282163597|ref|YP_003355982.1| - 0.023 14.6 15.2 3.5 7.7 0.0 7.4 8 1 0 8 8 8 0 NHL repeat Arylesterase PF01731.15 gi|282163597|ref|YP_003355982.1| - 0.043 13.7 5.8 1.7 8.6 0.1 4.3 4 2 2 6 6 6 0 Arylesterase Perilipin PF03036.11 gi|282163597|ref|YP_003355982.1| - 0.044 12.6 0.5 2.7 6.7 0.1 2.5 2 0 0 2 2 2 0 Perilipin family FlaG PF03646.10 gi|282163597|ref|YP_003355982.1| - 0.094 12.8 25.1 6.4 6.9 0.1 6.9 7 0 0 7 7 7 0 FlaG protein Kelch_1 PF01344.20 gi|282163597|ref|YP_003355982.1| - 6.8 6.3 26.4 14 5.3 0.2 6.5 7 0 0 7 7 7 0 Kelch motif ABC2_membrane_5 PF13346.1 gi|282163598|ref|YP_003355983.1| - 0.1 11.8 8.6 0.025 13.8 2.7 1.9 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF2759 PF10958.3 gi|282163598|ref|YP_003355983.1| - 5.3 6.7 9.3 1.2 8.8 2.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2759) RDD PF06271.7 gi|282163598|ref|YP_003355983.1| - 8.8 6.2 14.9 0.49 10.2 5.3 1.9 2 0 0 2 2 2 0 RDD family NHL PF01436.16 gi|282163600|ref|YP_003355985.1| - 1.6e-47 157.1 40.9 6.4e-06 25.8 0.1 12.9 12 0 0 12 12 12 12 NHL repeat SBBP PF06739.6 gi|282163600|ref|YP_003355985.1| - 2.9e-25 87.7 43.1 0.0015 18.2 0.2 12.2 11 0 0 11 11 11 9 Beta-propeller repeat SGL PF08450.7 gi|282163600|ref|YP_003355985.1| - 5.2e-12 45.6 9.5 0.016 14.6 0.1 7.8 1 1 7 8 8 8 4 SMP-30/Gluconolaconase/LRE-like region FlgD_ig PF13860.1 gi|282163600|ref|YP_003355985.1| - 1.4e-08 34.3 0.0 9.3e-08 31.7 0.0 2.5 1 0 0 1 1 1 1 FlgD Ig-like domain Arylesterase PF01731.15 gi|282163600|ref|YP_003355985.1| - 2.9e-05 23.9 8.6 0.33 10.9 0.1 6.9 3 2 5 8 8 8 1 Arylesterase CarboxypepD_reg PF13620.1 gi|282163600|ref|YP_003355985.1| - 0.00083 19.3 6.7 0.0053 16.7 3.5 3.0 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain SdiA-regulated PF06977.6 gi|282163600|ref|YP_003355985.1| - 0.0083 15.1 1.3 30 3.4 0.0 5.6 5 2 1 7 7 7 0 SdiA-regulated DUF1737 PF08410.5 gi|282163600|ref|YP_003355985.1| - 0.0095 15.6 0.0 6.7 6.5 0.0 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF1737) US22 PF02393.11 gi|282163600|ref|YP_003355985.1| - 0.2 11.6 2.1 17 5.4 0.1 4.0 5 1 0 5 5 5 0 US22 like DUF1935 PF09149.5 gi|282163600|ref|YP_003355985.1| - 0.2 11.6 3.3 0.24 11.3 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1935) DUF1049 PF06305.6 gi|282163601|ref|YP_003355986.1| - 0.014 14.8 0.3 0.026 13.9 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) DUF1180 PF06679.7 gi|282163601|ref|YP_003355986.1| - 3.7 7.4 4.9 1.7 8.5 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1180) PLRV_ORF5 PF01690.12 gi|282163601|ref|YP_003355986.1| - 9.2 5.2 5.7 13 4.7 3.9 1.2 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Mpv17_PMP22 PF04117.7 gi|282163602|ref|YP_003355987.1| - 0.065 12.8 0.2 0.58 9.8 0.0 2.2 2 0 0 2 2 2 0 Mpv17 / PMP22 family Ank PF00023.25 gi|282163603|ref|YP_003355988.1| - 4e-17 61.0 0.0 4.5e-10 38.8 0.0 2.5 2 0 0 2 2 2 2 Ankyrin repeat Ank_2 PF12796.2 gi|282163603|ref|YP_003355988.1| - 8.7e-17 61.2 0.3 1.7e-16 60.3 0.2 1.5 1 1 0 1 1 1 1 Ankyrin repeats (3 copies) Ank_5 PF13857.1 gi|282163603|ref|YP_003355988.1| - 1e-13 51.0 0.1 1.6e-07 31.3 0.0 2.3 1 1 1 2 2 2 2 Ankyrin repeats (many copies) Ank_3 PF13606.1 gi|282163603|ref|YP_003355988.1| - 4e-11 42.0 0.1 2.2e-06 27.3 0.0 2.8 3 0 0 3 3 3 2 Ankyrin repeat Ank_4 PF13637.1 gi|282163603|ref|YP_003355988.1| - 8.9e-11 42.0 0.1 1.1e-07 32.1 0.0 2.5 1 1 2 3 3 3 2 Ankyrin repeats (many copies) FCD PF07729.7 gi|282163603|ref|YP_003355988.1| - 0.01 16.1 0.0 5.4 7.3 0.0 2.9 3 0 0 3 3 3 0 FCD domain SnoaL_2 PF12680.2 gi|282163603|ref|YP_003355988.1| - 0.061 13.7 0.0 0.076 13.4 0.0 1.3 1 1 0 1 1 1 0 SnoaL-like domain Metallophos_2 PF12850.2 gi|282163604|ref|YP_003355989.1| - 8.4e-10 38.7 0.2 1.4e-09 37.9 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AMP-binding PF00501.23 gi|282163605|ref|YP_003355990.1| - 2.6e-82 276.4 0.0 3.2e-82 276.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|282163605|ref|YP_003355990.1| - 9.4e-19 68.1 2.4 1.1e-18 67.9 0.8 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Cupin_2 PF07883.6 gi|282163606|ref|YP_003355991.1| - 3.6e-15 55.2 0.0 7.5e-15 54.1 0.0 1.6 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.2 gi|282163606|ref|YP_003355991.1| - 1.3e-08 34.7 0.3 2.2e-08 34.0 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|282163606|ref|YP_003355991.1| - 6.6e-07 29.0 0.1 1.3e-06 28.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|282163606|ref|YP_003355991.1| - 0.0015 18.6 0.0 0.0023 18.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.14 gi|282163606|ref|YP_003355991.1| - 0.0062 16.2 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain dCMP_cyt_deam_1 PF00383.17 gi|282163607|ref|YP_003355992.1| - 1.9e-23 82.0 0.8 2.4e-23 81.7 0.5 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|282163607|ref|YP_003355992.1| - 0.033 13.8 0.2 0.041 13.5 0.1 1.1 1 0 0 1 1 1 0 APOBEC-like N-terminal domain Bd3614-deam PF14439.1 gi|282163607|ref|YP_003355992.1| - 1.2 9.0 7.2 3 7.6 0.1 2.3 1 1 1 2 2 2 0 Bd3614-like deaminase HypA PF01155.14 gi|282163608|ref|YP_003355993.1| - 0.00043 19.9 0.4 0.00044 19.9 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|282163608|ref|YP_003355993.1| - 0.0012 18.7 7.0 0.0045 16.9 4.9 1.8 1 1 0 1 1 1 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|282163608|ref|YP_003355993.1| - 0.0018 18.0 1.7 0.84 9.4 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|282163608|ref|YP_003355993.1| - 0.005 16.4 2.8 0.44 10.2 0.1 2.1 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zinc-ribbons_6 PF07191.7 gi|282163608|ref|YP_003355993.1| - 0.021 14.6 0.3 0.026 14.3 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|282163608|ref|YP_003355993.1| - 0.032 13.9 1.4 0.044 13.4 1.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|282163608|ref|YP_003355993.1| - 0.034 13.8 2.4 0.048 13.3 1.7 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DnaJ_CXXCXGXG PF00684.14 gi|282163608|ref|YP_003355993.1| - 0.042 13.8 1.4 0.05 13.6 1.0 1.1 1 0 0 1 1 1 0 DnaJ central domain DZR PF12773.2 gi|282163608|ref|YP_003355993.1| - 0.045 13.5 1.0 0.063 13.1 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon Desulfoferrod_N PF06397.7 gi|282163608|ref|YP_003355993.1| - 0.058 12.7 0.5 0.1 12.0 0.3 1.5 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain FYDLN_acid PF09538.5 gi|282163608|ref|YP_003355993.1| - 0.059 13.9 1.3 0.065 13.8 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Zn_Tnp_IS91 PF14319.1 gi|282163608|ref|YP_003355993.1| - 0.091 12.2 0.3 0.11 12.0 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain PhnA_Zn_Ribbon PF08274.7 gi|282163608|ref|YP_003355993.1| - 0.092 12.5 6.3 0.2 11.4 1.2 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-H2C2_2 PF13465.1 gi|282163608|ref|YP_003355993.1| - 0.21 11.9 5.4 0.32 11.3 0.4 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Rubredoxin PF00301.15 gi|282163608|ref|YP_003355993.1| - 0.28 11.0 5.6 16 5.4 3.9 2.3 1 1 0 1 1 1 0 Rubredoxin Zn_Tnp_IS1 PF03811.8 gi|282163608|ref|YP_003355993.1| - 0.3 10.6 3.4 7 6.2 0.5 2.3 2 0 0 2 2 2 0 InsA N-terminal domain DNA_RNApol_7kD PF03604.8 gi|282163608|ref|YP_003355993.1| - 0.32 10.5 3.2 0.93 9.0 2.2 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.1 gi|282163608|ref|YP_003355993.1| - 0.66 9.6 3.4 5.3 6.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|282163608|ref|YP_003355993.1| - 0.95 9.1 0.1 0.95 9.1 0.1 2.4 3 0 0 3 3 3 0 HIT zinc finger zinc_ribbon_4 PF13717.1 gi|282163608|ref|YP_003355993.1| - 0.99 9.1 3.7 6.8 6.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|282163608|ref|YP_003355993.1| - 1.1 9.2 5.6 17 5.5 3.9 2.2 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Opy2 PF09463.5 gi|282163608|ref|YP_003355993.1| - 1.6 8.8 7.0 8 6.6 4.8 1.9 1 1 0 1 1 1 0 Opy2 protein XPA_N PF01286.13 gi|282163608|ref|YP_003355993.1| - 1.6 8.4 6.7 0.9 9.2 1.3 2.1 2 0 0 2 2 2 0 XPA protein N-terminal zf-trcl PF13451.1 gi|282163608|ref|YP_003355993.1| - 2.4 7.8 5.9 0.8 9.3 0.8 2.0 1 1 1 2 2 2 0 Probable zinc-binding domain zf-ISL3 PF14690.1 gi|282163608|ref|YP_003355993.1| - 2.7 8.1 6.0 16 5.5 0.8 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2 PF00096.21 gi|282163608|ref|YP_003355993.1| - 4.7 7.7 6.3 1.9 9.0 0.8 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF3797 PF12677.2 gi|282163608|ref|YP_003355993.1| - 4.8 6.8 6.4 12 5.5 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TF_Zn_Ribbon PF08271.7 gi|282163608|ref|YP_003355993.1| - 6.2 6.2 7.6 8 5.8 0.2 2.5 3 0 0 3 3 3 0 TFIIB zinc-binding Amidase PF01425.16 gi|282163609|ref|YP_003355994.1| - 3.3e-108 362.3 0.0 3.7e-108 362.2 0.0 1.0 1 0 0 1 1 1 1 Amidase ATC_hydrolase PF14196.1 gi|282163611|ref|YP_003355996.1| - 9.6e-05 22.8 0.0 0.00012 22.5 0.0 1.2 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase UPF0126 PF03458.8 gi|282163612|ref|YP_003355997.1| - 2.7e-48 161.4 25.0 3.8e-25 87.3 8.5 2.1 2 0 0 2 2 2 2 UPF0126 domain PolyA_pol PF01743.15 gi|282163612|ref|YP_003355997.1| - 0.058 13.6 0.1 9.9 6.3 0.0 2.2 2 0 0 2 2 2 0 Poly A polymerase head domain TRIC PF05197.8 gi|282163612|ref|YP_003355997.1| - 0.061 12.7 0.4 0.14 11.5 0.1 1.7 2 0 0 2 2 2 0 TRIC channel Fst_toxin PF13955.1 gi|282163612|ref|YP_003355997.1| - 3.2 7.5 7.1 0.94 9.2 1.1 2.6 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system DUF4179 PF13786.1 gi|282163613|ref|YP_003355998.1| - 0.16 12.1 0.1 0.24 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) CARDB PF07705.6 gi|282163614|ref|YP_003355999.1| - 0.00011 22.1 0.1 0.00016 21.6 0.1 1.2 1 0 0 1 1 1 1 CARDB DUF2393 PF09624.5 gi|282163614|ref|YP_003355999.1| - 0.00013 21.5 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2393) DUF11 PF01345.13 gi|282163614|ref|YP_003355999.1| - 0.0095 15.9 0.5 0.046 13.7 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|282163614|ref|YP_003355999.1| - 0.011 14.8 0.1 0.033 13.3 0.0 1.7 1 1 0 1 1 1 0 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|282163614|ref|YP_003355999.1| - 0.012 15.6 0.1 2.3 8.3 0.0 2.6 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Arrestin_C PF02752.17 gi|282163614|ref|YP_003355999.1| - 0.058 13.5 0.2 0.12 12.4 0.2 1.6 1 1 0 1 1 1 0 Arrestin (or S-antigen), C-terminal domain A2M_N PF01835.14 gi|282163614|ref|YP_003355999.1| - 0.1 12.8 0.2 0.22 11.7 0.1 1.6 1 1 0 1 1 1 0 MG2 domain DUF2510 PF10708.4 gi|282163615|ref|YP_003356000.1| - 0.013 14.9 0.6 0.024 14.0 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2510) DUF258 PF03193.11 gi|282163616|ref|YP_003356001.1| - 3.4e-50 169.3 0.0 6e-50 168.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|282163616|ref|YP_003356001.1| - 1.6e-07 31.7 0.2 3.1e-07 30.7 0.1 1.6 1 1 0 1 1 1 1 ABC transporter MMR_HSR1 PF01926.18 gi|282163616|ref|YP_003356001.1| - 2.1e-07 30.8 0.0 2.3e-06 27.5 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|282163616|ref|YP_003356001.1| - 5.9e-05 22.3 0.0 0.041 13.1 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B AAA_29 PF13555.1 gi|282163616|ref|YP_003356001.1| - 0.00021 20.7 0.1 0.00039 19.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Miro PF08477.8 gi|282163616|ref|YP_003356001.1| - 0.00043 20.7 0.1 0.12 12.9 0.0 2.4 2 0 0 2 2 2 1 Miro-like protein GTP_EFTU PF00009.22 gi|282163616|ref|YP_003356001.1| - 0.0014 18.1 0.7 0.057 12.8 0.0 2.6 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain PduV-EutP PF10662.4 gi|282163616|ref|YP_003356001.1| - 0.0038 16.7 0.1 2.4 7.6 0.0 2.6 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|282163616|ref|YP_003356001.1| - 0.008 16.1 0.1 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AIG1 PF04548.11 gi|282163616|ref|YP_003356001.1| - 0.0085 15.2 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 AIG1 family Zeta_toxin PF06414.7 gi|282163616|ref|YP_003356001.1| - 0.021 13.9 0.0 0.04 13.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_21 PF13304.1 gi|282163616|ref|YP_003356001.1| - 0.025 14.5 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|282163616|ref|YP_003356001.1| - 0.03 14.6 0.3 0.097 12.9 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|282163616|ref|YP_003356001.1| - 0.031 14.2 0.5 0.058 13.3 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain Guanylate_kin PF00625.16 gi|282163616|ref|YP_003356001.1| - 0.042 13.2 0.1 0.079 12.3 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase AAA_17 PF13207.1 gi|282163616|ref|YP_003356001.1| - 0.048 14.4 0.4 0.12 13.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain IIGP PF05049.8 gi|282163616|ref|YP_003356001.1| - 0.057 12.2 0.0 0.085 11.6 0.0 1.4 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_33 PF13671.1 gi|282163616|ref|YP_003356001.1| - 0.074 12.9 0.5 1.1 9.1 0.1 2.7 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|282163616|ref|YP_003356001.1| - 0.078 12.3 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Septin PF00735.13 gi|282163616|ref|YP_003356001.1| - 0.086 11.8 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Septin Ras PF00071.17 gi|282163616|ref|YP_003356001.1| - 0.1 11.9 0.0 1.7 8.0 0.0 2.3 2 0 0 2 2 2 0 Ras family Dynamin_N PF00350.18 gi|282163616|ref|YP_003356001.1| - 0.12 12.2 3.7 0.76 9.5 0.5 3.0 2 1 0 2 2 2 0 Dynamin family PrsW-protease PF13367.1 gi|282163617|ref|YP_003356002.1| - 2.4e-17 62.7 9.8 2.4e-17 62.7 6.8 2.0 2 1 0 2 2 2 1 Protease prsW family YXWGXW PF12779.2 gi|282163617|ref|YP_003356002.1| - 0.83 9.6 6.0 0.25 11.2 0.8 2.5 2 0 0 2 2 2 0 YXWGXW repeat (2 copies) Glycos_transf_2 PF00535.21 gi|282163619|ref|YP_003356004.1| - 1.1e-22 80.4 1.2 5.1e-22 78.3 0.6 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 2 UDPG_MGDP_dh PF00984.14 gi|282163619|ref|YP_003356004.1| - 2.1e-19 69.5 0.0 4.6e-19 68.4 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_N PF03721.9 gi|282163619|ref|YP_003356004.1| - 3.1e-16 59.3 0.1 1.7e-15 56.8 0.0 2.1 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_tranf_2_3 PF13641.1 gi|282163619|ref|YP_003356004.1| - 3.5e-09 36.8 0.0 1.9e-08 34.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|282163619|ref|YP_003356004.1| - 6.8e-05 22.0 0.2 0.00019 20.5 0.1 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Mcp5_PH PF12814.2 gi|282163619|ref|YP_003356004.1| - 0.044 13.6 0.2 0.14 12.1 0.1 1.8 1 0 0 1 1 1 0 Meiotic cell cortex C-terminal pleckstrin homology Radical_SAM PF04055.16 gi|282163620|ref|YP_003356005.1| - 2.2e-13 50.7 0.0 3.1e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|282163620|ref|YP_003356005.1| - 1e-07 32.1 0.9 1e-07 32.1 0.6 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|282163620|ref|YP_003356005.1| - 2.8e-05 24.1 0.2 7.5e-05 22.7 0.1 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|282163620|ref|YP_003356005.1| - 0.00023 21.3 0.1 0.0004 20.5 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Glycos_transf_2 PF00535.21 gi|282163621|ref|YP_003356006.1| - 1.9e-06 27.6 0.0 2.8e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282163621|ref|YP_003356006.1| - 0.0026 17.5 0.0 0.083 12.6 0.0 2.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|282163621|ref|YP_003356006.1| - 0.0045 16.7 0.1 0.016 14.8 0.1 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|282163622|ref|YP_003356007.1| - 1.6e-15 57.1 4.1 1.7e-11 44.0 0.2 3.6 3 0 0 3 3 3 3 Glycosyl transferase family 2 His_Phos_1 PF00300.17 gi|282163622|ref|YP_003356007.1| - 1e-14 54.9 0.0 2.1e-14 53.8 0.0 1.6 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Radical_SAM PF04055.16 gi|282163623|ref|YP_003356008.1| - 6.5e-09 36.1 0.0 9.1e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|282163623|ref|YP_003356008.1| - 2.8e-08 33.8 0.0 4.4e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|282163623|ref|YP_003356008.1| - 7.6e-07 29.3 0.1 1.2e-06 28.6 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain EcoEI_R_C PF08463.5 gi|282163624|ref|YP_003356009.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 EcoEI R protein C-terminal WASH_WAHD PF11945.3 gi|282163628|ref|YP_003356013.1| - 0.016 14.5 0.2 0.021 14.1 0.1 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex DUF3381 PF11861.3 gi|282163628|ref|YP_003356013.1| - 0.053 13.0 0.0 0.082 12.4 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3381) DUF939_C PF11728.3 gi|282163628|ref|YP_003356013.1| - 0.055 13.2 0.1 0.066 13.0 0.1 1.1 1 0 0 1 1 1 0 DUF939 C-terminal domain MCPsignal PF00015.16 gi|282163628|ref|YP_003356013.1| - 0.057 12.9 0.1 0.077 12.5 0.1 1.1 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF217 PF02697.9 gi|282163628|ref|YP_003356013.1| - 0.47 10.7 0.2 0.47 10.7 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized ACR, COG1753 VWA_2 PF13519.1 gi|282163629|ref|YP_003356014.1| - 1.4e-10 41.5 0.0 2e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|282163629|ref|YP_003356014.1| - 7.8e-10 38.7 0.0 9.8e-10 38.4 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|282163629|ref|YP_003356014.1| - 0.0028 16.8 0.0 0.0054 15.8 0.0 1.3 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein vWA-TerF-like PF10138.4 gi|282163629|ref|YP_003356014.1| - 0.0096 15.7 0.2 1.6 8.4 0.0 2.2 2 0 0 2 2 2 2 vWA found in TerF C terminus RmuC PF02646.11 gi|282163631|ref|YP_003356016.1| - 2.2e-82 276.3 1.3 2.2e-82 276.3 0.9 3.0 3 0 0 3 3 3 2 RmuC family DUF4407 PF14362.1 gi|282163631|ref|YP_003356016.1| - 0.0029 16.6 16.2 0.0029 16.6 11.2 2.5 2 1 1 3 3 3 1 Domain of unknown function (DUF4407) IncA PF04156.9 gi|282163631|ref|YP_003356016.1| - 0.005 16.4 1.9 0.005 16.4 1.3 4.0 2 1 1 3 3 3 1 IncA protein DUF3584 PF12128.3 gi|282163631|ref|YP_003356016.1| - 2.3 5.4 34.8 6.6 3.9 23.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3584) UvrD_C PF13361.1 gi|282163632|ref|YP_003356017.1| - 2.3e-59 201.6 1.5 2.5e-59 201.5 0.2 1.6 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.16 gi|282163632|ref|YP_003356017.1| - 2.1e-56 191.5 3.0 4.7e-56 190.3 2.1 1.6 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain PDDEXK_1 PF12705.2 gi|282163632|ref|YP_003356017.1| - 3.5e-31 108.5 2.7 1.6e-30 106.3 0.0 3.2 4 0 0 4 4 4 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.1 gi|282163632|ref|YP_003356017.1| - 5.9e-12 45.5 0.0 6.5e-09 35.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|282163632|ref|YP_003356017.1| - 8.7e-12 44.6 0.1 2.3e-11 43.3 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|282163632|ref|YP_003356017.1| - 3e-10 40.1 0.6 0.00041 20.4 0.0 3.9 4 0 0 4 4 4 2 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|282163632|ref|YP_003356017.1| - 8.4e-06 25.4 2.4 6.2 6.2 0.2 4.6 4 1 1 5 5 5 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|282163632|ref|YP_003356017.1| - 2.1e-05 24.2 0.0 5.6e-05 22.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|282163632|ref|YP_003356017.1| - 3.9e-05 22.9 0.3 0.0059 15.8 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.1 gi|282163632|ref|YP_003356017.1| - 7e-05 22.9 0.2 0.45 10.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain ResIII PF04851.10 gi|282163632|ref|YP_003356017.1| - 0.0023 17.7 0.4 0.016 15.0 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_16 PF13191.1 gi|282163632|ref|YP_003356017.1| - 0.0031 17.5 0.0 0.089 12.7 0.0 2.9 1 1 0 1 1 1 1 AAA ATPase domain DEAD PF00270.24 gi|282163632|ref|YP_003356017.1| - 0.0058 16.1 0.7 0.032 13.7 0.5 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase T2SE PF00437.15 gi|282163632|ref|YP_003356017.1| - 0.0082 15.0 0.0 0.022 13.6 0.0 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein Homoserine_dh PF00742.14 gi|282163632|ref|YP_003356017.1| - 0.094 12.3 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase AAA_25 PF13481.1 gi|282163632|ref|YP_003356017.1| - 0.12 11.7 0.0 0.4 10.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain N6_N4_Mtase PF01555.13 gi|282163635|ref|YP_003356020.1| - 1.3e-16 60.7 7.1 2.7e-11 43.4 0.0 2.6 3 0 0 3 3 3 2 DNA methylase Methyltransf_26 PF13659.1 gi|282163635|ref|YP_003356020.1| - 3.4e-06 27.0 0.0 2.6e-05 24.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|282163635|ref|YP_003356020.1| - 6e-05 22.6 0.0 0.003 17.1 0.0 2.4 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.10 gi|282163635|ref|YP_003356020.1| - 6.6e-05 22.4 2.4 0.0011 18.5 0.0 2.7 3 0 0 3 3 3 1 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.10 gi|282163635|ref|YP_003356020.1| - 0.00014 21.3 0.0 0.36 10.1 0.0 2.3 2 0 0 2 2 2 2 Conserved hypothetical protein 95 DUF1156 PF06634.7 gi|282163635|ref|YP_003356020.1| - 0.091 12.5 0.5 0.17 11.6 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1156) RNase_Zc3h12a_2 PF14626.1 gi|282163635|ref|YP_003356020.1| - 0.1 12.4 1.8 0.94 9.3 0.1 2.6 2 0 0 2 2 2 0 Zc3h12a-like Ribonuclease NYN domain RPM2 PF08579.6 gi|282163635|ref|YP_003356020.1| - 3.1 7.9 11.6 20 5.3 1.1 4.1 2 2 1 3 3 3 0 Mitochondrial ribonuclease P subunit (RPM2) N6_N4_Mtase PF01555.13 gi|282163636|ref|YP_003356021.1| - 2.2e-14 53.4 6.3 5.7e-13 48.8 0.6 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|282163636|ref|YP_003356021.1| - 4.2e-09 36.4 0.0 7.3e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|282163636|ref|YP_003356021.1| - 0.034 13.5 0.0 0.06 12.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|282163636|ref|YP_003356021.1| - 0.043 13.3 0.0 0.087 12.3 0.0 1.5 1 0 0 1 1 1 0 Met-10+ like-protein Gp-FAR-1 PF05823.7 gi|282163636|ref|YP_003356021.1| - 0.23 11.3 3.5 0.9 9.4 0.2 2.5 2 1 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) McrBC PF10117.4 gi|282163637|ref|YP_003356022.1| - 1.2e-35 122.9 0.2 1.4e-35 122.7 0.1 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component AAA_5 PF07728.9 gi|282163638|ref|YP_003356023.1| - 6.2e-14 51.8 0.0 4.1e-12 46.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|282163638|ref|YP_003356023.1| - 1.4e-09 38.2 0.0 5.3e-09 36.3 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|282163638|ref|YP_003356023.1| - 0.00019 21.2 0.1 0.00034 20.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|282163638|ref|YP_003356023.1| - 0.00024 21.8 0.0 0.0044 17.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|282163638|ref|YP_003356023.1| - 0.001 19.2 0.0 0.0027 17.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|282163638|ref|YP_003356023.1| - 0.0011 18.9 0.0 0.026 14.4 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|282163638|ref|YP_003356023.1| - 0.0031 17.1 0.0 0.0051 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|282163638|ref|YP_003356023.1| - 0.0033 16.8 0.0 0.0096 15.3 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|282163638|ref|YP_003356023.1| - 0.0033 17.3 0.0 0.0073 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|282163638|ref|YP_003356023.1| - 0.0053 16.1 0.0 0.01 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|282163638|ref|YP_003356023.1| - 0.0054 16.4 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain RNA_helicase PF00910.17 gi|282163638|ref|YP_003356023.1| - 0.0068 16.5 0.0 0.027 14.6 0.0 2.1 1 0 0 1 1 1 1 RNA helicase NACHT PF05729.7 gi|282163638|ref|YP_003356023.1| - 0.0086 15.7 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain PhoH PF02562.11 gi|282163638|ref|YP_003356023.1| - 0.012 14.9 0.0 0.026 13.7 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein RuvB_N PF05496.7 gi|282163638|ref|YP_003356023.1| - 0.016 14.2 0.0 0.13 11.2 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|282163638|ref|YP_003356023.1| - 0.023 14.9 0.0 0.062 13.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|282163638|ref|YP_003356023.1| - 0.045 13.7 0.0 0.2 11.6 0.0 2.1 2 0 0 2 2 1 0 AAA ATPase domain Kri1 PF05178.7 gi|282163638|ref|YP_003356023.1| - 0.047 13.9 0.0 0.15 12.3 0.0 1.8 1 0 0 1 1 1 0 KRI1-like family AAA_11 PF13086.1 gi|282163638|ref|YP_003356023.1| - 0.049 13.2 0.0 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3929 PF13066.1 gi|282163638|ref|YP_003356023.1| - 0.05 13.3 0.2 1.5 8.6 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3929) Zeta_toxin PF06414.7 gi|282163638|ref|YP_003356023.1| - 0.052 12.6 0.0 0.098 11.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Sigma54_activat PF00158.21 gi|282163638|ref|YP_003356023.1| - 0.054 12.9 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF1743 PF08489.6 gi|282163638|ref|YP_003356023.1| - 0.094 12.4 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1743) Mg_chelatase PF01078.16 gi|282163638|ref|YP_003356023.1| - 0.25 10.4 0.0 0.45 9.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|282163638|ref|YP_003356023.1| - 0.27 10.8 0.0 0.54 9.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain GTP-bdg_N PF13167.1 gi|282163639|ref|YP_003356024.1| - 0.0079 16.3 0.8 0.037 14.1 0.1 2.2 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal Pyr_redox_2 PF07992.9 gi|282163640|ref|YP_003356025.1| - 8.4e-33 113.9 0.0 1.7e-32 112.9 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|282163640|ref|YP_003356025.1| - 3.3e-21 75.3 0.4 8.1e-21 74.1 0.2 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|282163640|ref|YP_003356025.1| - 3.2e-14 53.0 0.6 1.2e-13 51.2 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|282163640|ref|YP_003356025.1| - 4e-05 22.7 3.9 0.39 9.5 0.1 3.3 3 0 0 3 3 3 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|282163640|ref|YP_003356025.1| - 0.0027 16.6 4.7 0.18 10.6 0.8 2.8 2 1 1 3 3 3 2 FAD binding domain ApbA PF02558.11 gi|282163640|ref|YP_003356025.1| - 0.0033 16.8 0.0 0.007 15.8 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GIDA PF01134.17 gi|282163640|ref|YP_003356025.1| - 0.019 13.8 2.2 2.9 6.6 0.0 2.7 2 1 0 2 2 2 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|282163640|ref|YP_003356025.1| - 0.021 14.4 0.1 0.07 12.7 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|282163640|ref|YP_003356025.1| - 0.023 14.0 0.0 0.046 13.1 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K_oxygenase PF13434.1 gi|282163640|ref|YP_003356025.1| - 0.024 13.5 0.0 5 5.9 0.0 2.3 1 1 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.9 gi|282163640|ref|YP_003356025.1| - 0.052 12.0 1.6 0.44 8.9 0.2 2.6 3 0 0 3 3 3 0 HI0933-like protein 2-Hacid_dh_C PF02826.14 gi|282163640|ref|YP_003356025.1| - 0.089 11.9 0.0 0.33 10.0 0.0 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SIS PF01380.17 gi|282163642|ref|YP_003356027.1| - 2.4e-49 166.2 3.9 7.7e-31 106.4 0.8 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|282163642|ref|YP_003356027.1| - 2.5e-24 85.7 0.0 5e-24 84.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|282163642|ref|YP_003356027.1| - 3.6e-20 71.9 0.0 6.5e-20 71.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|282163642|ref|YP_003356027.1| - 4.3e-19 68.4 3.1 1.2e-14 53.8 0.2 2.7 2 1 1 3 3 3 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|282163642|ref|YP_003356027.1| - 7.3e-06 24.8 0.1 1.8e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|282163642|ref|YP_003356027.1| - 2.8e-05 23.8 0.1 9.9e-05 22.0 0.1 2.0 1 0 0 1 1 1 1 SIS domain DUF2264 PF10022.4 gi|282163642|ref|YP_003356027.1| - 0.044 12.4 0.0 0.076 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2264) Acetyltransf_3 PF13302.1 gi|282163643|ref|YP_003356028.1| - 2.4e-23 82.8 0.2 3.1e-23 82.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|282163643|ref|YP_003356028.1| - 2.5e-12 46.6 0.0 4.4e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|282163643|ref|YP_003356028.1| - 7e-10 38.9 0.0 1.2e-09 38.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|282163643|ref|YP_003356028.1| - 7.3e-09 35.7 0.0 9.1e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|282163643|ref|YP_003356028.1| - 0.00049 19.7 0.0 0.00083 19.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|282163643|ref|YP_003356028.1| - 0.0017 18.4 0.0 0.0023 18.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|282163643|ref|YP_003356028.1| - 0.01 15.9 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AstA PF04958.7 gi|282163643|ref|YP_003356028.1| - 0.16 10.3 0.0 0.24 9.7 0.0 1.1 1 0 0 1 1 1 0 Arginine N-succinyltransferase beta subunit Methyltransf_11 PF08241.7 gi|282163644|ref|YP_003356029.1| - 2.7e-14 53.4 0.0 4.2e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163644|ref|YP_003356029.1| - 9.1e-14 51.3 0.0 1.7e-13 50.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282163644|ref|YP_003356029.1| - 1.5e-12 47.5 0.0 2.2e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282163644|ref|YP_003356029.1| - 2.1e-12 47.3 0.0 2.8e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282163644|ref|YP_003356029.1| - 1.9e-11 44.5 0.0 2.5e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282163644|ref|YP_003356029.1| - 1.4e-08 34.1 0.0 4.4e-08 32.5 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|282163644|ref|YP_003356029.1| - 2.3e-08 34.3 0.0 3.4e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|282163644|ref|YP_003356029.1| - 1.3e-07 31.0 0.0 1.6e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_26 PF13659.1 gi|282163644|ref|YP_003356029.1| - 0.00027 20.9 0.0 0.00043 20.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|282163644|ref|YP_003356029.1| - 0.00055 19.3 0.0 0.00072 19.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) CheR PF01739.13 gi|282163644|ref|YP_003356029.1| - 0.0013 18.0 0.0 0.0019 17.4 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain MTS PF05175.9 gi|282163644|ref|YP_003356029.1| - 0.0025 17.1 0.0 0.0033 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|282163644|ref|YP_003356029.1| - 0.087 11.8 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase NAS PF03059.11 gi|282163644|ref|YP_003356029.1| - 0.12 11.4 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 Nicotianamine synthase protein Rieske PF00355.21 gi|282163645|ref|YP_003356030.1| - 1.4e-15 56.6 0.0 1.6e-15 56.4 0.0 1.0 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|282163645|ref|YP_003356030.1| - 2.9e-10 39.8 0.0 3.3e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Glutaredoxin PF00462.19 gi|282163646|ref|YP_003356031.1| - 1.2e-10 41.1 0.1 2.2e-10 40.3 0.1 1.4 1 0 0 1 1 1 1 Glutaredoxin ArsC PF03960.10 gi|282163646|ref|YP_003356031.1| - 7.4e-07 29.2 0.0 0.0011 18.9 0.0 2.0 1 1 1 2 2 2 2 ArsC family GST_N_3 PF13417.1 gi|282163646|ref|YP_003356031.1| - 0.00052 20.1 0.0 0.0007 19.7 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF393 PF04134.7 gi|282163646|ref|YP_003356031.1| - 0.11 13.6 0.0 0.12 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF393 Thioredoxin_4 PF13462.1 gi|282163646|ref|YP_003356031.1| - 0.16 11.9 0.5 14 5.6 0.1 2.0 1 1 1 2 2 2 0 Thioredoxin FeThRed_B PF02943.10 gi|282163647|ref|YP_003356032.1| - 1.3e-14 53.8 0.2 1.6e-14 53.5 0.2 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Rieske PF00355.21 gi|282163648|ref|YP_003356033.1| - 5e-11 42.0 0.0 6.1e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|282163648|ref|YP_003356033.1| - 0.0005 19.7 0.0 0.00073 19.2 0.0 1.3 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain PALP PF00291.20 gi|282163649|ref|YP_003356034.1| - 3.4e-68 230.1 0.3 3.9e-68 229.9 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Hydrolase PF00702.21 gi|282163649|ref|YP_003356034.1| - 0.12 12.8 0.3 15 5.8 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase zf-CSL PF05207.8 gi|282163649|ref|YP_003356034.1| - 1.8 8.1 3.6 3.6 7.1 0.1 2.2 1 1 1 2 2 2 0 CSL zinc finger PQQ_2 PF13360.1 gi|282163652|ref|YP_003356037.1| - 6e-18 65.1 5.8 8.5e-08 31.9 0.4 3.1 1 1 2 3 3 3 3 PQQ-like domain WD40 PF00400.27 gi|282163652|ref|YP_003356037.1| - 3.6e-14 51.9 8.9 0.0025 17.6 0.0 6.7 6 1 0 6 6 6 4 WD domain, G-beta repeat PQQ_3 PF13570.1 gi|282163652|ref|YP_003356037.1| - 1.1e-13 50.9 10.6 0.0028 17.8 0.0 7.7 6 2 2 8 8 8 4 PQQ-like domain PQQ PF01011.16 gi|282163652|ref|YP_003356037.1| - 2.5e-05 23.5 2.2 3.9 7.1 0.0 5.4 7 0 0 7 7 7 1 PQQ enzyme repeat RAB3GAP2_N PF14655.1 gi|282163652|ref|YP_003356037.1| - 0.00068 18.7 0.0 0.36 9.7 0.0 2.3 1 1 0 2 2 2 2 Rab3 GTPase-activating protein regulatory subunit N-terminus IKI3 PF04762.7 gi|282163652|ref|YP_003356037.1| - 0.0017 16.2 0.0 0.0025 15.7 0.0 1.3 1 0 0 1 1 1 1 IKI3 family zinc_ribbon_2 PF13240.1 gi|282163652|ref|YP_003356037.1| - 0.013 14.9 1.2 0.026 14.0 0.8 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|282163652|ref|YP_003356037.1| - 0.066 13.0 0.7 0.15 11.9 0.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon DSPc PF00782.15 gi|282163653|ref|YP_003356038.1| - 2e-08 33.8 0.0 2.3e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase3 PF13350.1 gi|282163653|ref|YP_003356038.1| - 6.4e-05 23.2 0.0 8.1e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Tyrosine phosphatase family Y_phosphatase PF00102.22 gi|282163653|ref|YP_003356038.1| - 0.00034 20.0 0.0 0.00048 19.5 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase Phage_base_V PF04717.7 gi|282163653|ref|YP_003356038.1| - 0.066 13.1 0.0 0.15 11.9 0.0 1.5 2 0 0 2 2 2 0 Phage-related baseplate assembly protein Y_phosphatase2 PF03162.8 gi|282163653|ref|YP_003356038.1| - 0.079 12.3 0.0 0.097 12.0 0.0 1.2 1 0 0 1 1 1 0 Tyrosine phosphatase family ABC2_membrane_2 PF12679.2 gi|282163655|ref|YP_003356040.1| - 8.4e-46 156.0 14.6 1.1e-45 155.6 10.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282163655|ref|YP_003356040.1| - 1.1e-23 83.6 8.8 1.1e-23 83.6 6.1 2.2 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|282163655|ref|YP_003356040.1| - 1.3e-11 44.1 29.0 7.8e-11 41.5 20.0 2.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|282163655|ref|YP_003356040.1| - 3.3e-08 32.9 14.5 3.3e-08 32.9 10.1 2.3 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|282163655|ref|YP_003356040.1| - 1.7e-07 30.7 19.3 1.7e-07 30.7 13.4 2.5 3 0 0 3 3 3 1 ABC-2 family transporter protein DUF1845 PF08900.6 gi|282163655|ref|YP_003356040.1| - 0.083 12.1 0.1 0.13 11.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1845) ABC_tran PF00005.22 gi|282163656|ref|YP_003356041.1| - 2e-27 96.1 0.0 3.9e-27 95.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163656|ref|YP_003356041.1| - 5.2e-16 59.4 0.0 9.6e-14 52.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|282163656|ref|YP_003356041.1| - 2.8e-08 34.1 0.1 5.8e-08 33.1 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SRP54 PF00448.17 gi|282163656|ref|YP_003356041.1| - 0.00062 19.2 0.1 0.001 18.5 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_15 PF13175.1 gi|282163656|ref|YP_003356041.1| - 0.0023 17.0 0.1 0.09 11.7 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|282163656|ref|YP_003356041.1| - 0.0029 17.7 1.1 0.047 13.8 0.1 2.8 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|282163656|ref|YP_003356041.1| - 0.004 17.5 0.0 0.0066 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|282163656|ref|YP_003356041.1| - 0.0077 15.7 0.0 0.59 9.5 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|282163656|ref|YP_003356041.1| - 0.014 14.8 0.1 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|282163656|ref|YP_003356041.1| - 0.026 14.2 0.0 0.057 13.1 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|282163656|ref|YP_003356041.1| - 0.038 13.1 0.0 0.088 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|282163656|ref|YP_003356041.1| - 0.064 13.1 0.0 0.24 11.2 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|282163656|ref|YP_003356041.1| - 0.085 12.4 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|282163656|ref|YP_003356041.1| - 0.09 11.9 0.1 0.27 10.4 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein AAA_28 PF13521.1 gi|282163656|ref|YP_003356041.1| - 0.15 11.9 0.2 1.6 8.6 0.0 2.6 4 0 0 4 4 4 0 AAA domain Methyltransf_18 PF12847.2 gi|282163658|ref|YP_003356043.1| - 1.2e-11 45.1 0.1 2.1e-11 44.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163658|ref|YP_003356043.1| - 1.1e-10 41.3 0.0 3.6e-10 39.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|282163658|ref|YP_003356043.1| - 1.3e-06 27.7 0.0 1.9e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|282163658|ref|YP_003356043.1| - 2e-06 27.8 0.0 3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|282163658|ref|YP_003356043.1| - 3.1e-06 26.8 0.1 4.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.7 gi|282163658|ref|YP_003356043.1| - 0.0003 21.2 0.0 0.0005 20.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282163658|ref|YP_003356043.1| - 0.00066 19.4 0.0 0.001 18.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282163658|ref|YP_003356043.1| - 0.0012 19.1 0.0 0.0019 18.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|282163658|ref|YP_003356043.1| - 0.0023 17.3 0.1 0.0036 16.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|282163658|ref|YP_003356043.1| - 0.0027 17.3 0.0 0.0042 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|282163658|ref|YP_003356043.1| - 0.0046 16.5 0.0 0.0061 16.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DOT1 PF08123.8 gi|282163658|ref|YP_003356043.1| - 0.01 15.1 0.0 0.015 14.6 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_12 PF08242.7 gi|282163658|ref|YP_003356043.1| - 0.022 15.2 0.3 0.057 13.8 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain RseA_N PF03872.8 gi|282163658|ref|YP_003356043.1| - 0.045 14.0 0.1 0.092 13.0 0.0 1.4 1 0 0 1 1 1 0 Anti sigma-E protein RseA, N-terminal domain MTS PF05175.9 gi|282163658|ref|YP_003356043.1| - 0.05 12.9 0.0 0.075 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain UPF0020 PF01170.13 gi|282163658|ref|YP_003356043.1| - 0.052 13.1 0.0 0.077 12.5 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Fer4_20 PF14691.1 gi|282163659|ref|YP_003356044.1| - 3.4e-43 145.7 1.8 6.1e-43 144.9 1.3 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|282163659|ref|YP_003356044.1| - 2.5e-19 69.9 3.7 2.7e-08 33.9 0.2 4.7 2 2 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|282163659|ref|YP_003356044.1| - 5.3e-15 55.5 2.9 7.7e-08 32.6 0.1 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|282163659|ref|YP_003356044.1| - 1.1e-11 45.1 0.1 0.00018 21.6 0.1 3.0 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|282163659|ref|YP_003356044.1| - 5.7e-09 35.8 1.0 3.2e-08 33.4 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|282163659|ref|YP_003356044.1| - 1.3e-08 34.6 0.4 0.00087 18.8 0.0 2.7 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.2 gi|282163659|ref|YP_003356044.1| - 1e-06 28.1 4.1 5.4e-05 22.4 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|282163659|ref|YP_003356044.1| - 1.6e-06 28.3 0.5 0.015 15.5 0.0 2.8 2 1 0 2 2 2 2 Putative NAD(P)-binding GIDA PF01134.17 gi|282163659|ref|YP_003356044.1| - 2.5e-06 26.5 3.1 0.00012 21.0 0.1 2.8 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|282163659|ref|YP_003356044.1| - 4.4e-06 25.7 2.0 4.6e-05 22.4 0.5 2.2 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|282163659|ref|YP_003356044.1| - 4.7e-06 25.8 1.5 9.2e-06 24.9 0.1 1.9 2 0 0 2 2 2 1 Thi4 family DAO PF01266.19 gi|282163659|ref|YP_003356044.1| - 1e-05 24.6 0.5 0.00025 20.0 0.2 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|282163659|ref|YP_003356044.1| - 4.5e-05 22.6 0.2 0.00043 19.4 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|282163659|ref|YP_003356044.1| - 4.7e-05 22.0 0.2 4.7e-05 22.0 0.1 2.2 3 0 0 3 3 3 1 HI0933-like protein 2-Hacid_dh_C PF02826.14 gi|282163659|ref|YP_003356044.1| - 5.3e-05 22.4 0.1 0.053 12.6 0.0 2.3 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|282163659|ref|YP_003356044.1| - 0.00051 20.1 0.1 0.18 11.9 0.0 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain ELFV_dehydrog PF00208.16 gi|282163659|ref|YP_003356044.1| - 0.00055 19.5 0.0 0.24 10.9 0.0 2.2 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Amino_oxidase PF01593.19 gi|282163659|ref|YP_003356044.1| - 0.0012 18.0 2.1 0.0031 16.6 0.0 2.2 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|282163659|ref|YP_003356044.1| - 0.0016 18.1 0.1 0.21 11.3 0.0 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.15 gi|282163659|ref|YP_003356044.1| - 0.0024 17.9 0.2 0.33 11.0 0.0 2.5 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Oxidored_nitro PF00148.14 gi|282163659|ref|YP_003356044.1| - 0.0027 16.3 0.1 0.019 13.6 0.0 2.0 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase NAD_binding_9 PF13454.1 gi|282163659|ref|YP_003356044.1| - 0.0043 16.8 0.2 0.13 12.0 0.1 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|282163659|ref|YP_003356044.1| - 0.013 15.1 0.4 0.19 11.3 0.1 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YjeF_N PF03853.10 gi|282163659|ref|YP_003356044.1| - 0.013 15.0 0.0 4.5 6.8 0.0 2.4 2 0 0 2 2 2 0 YjeF-related protein N-terminus Fer4_8 PF13183.1 gi|282163659|ref|YP_003356044.1| - 0.016 15.2 6.0 0.036 14.0 4.2 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain F420_oxidored PF03807.12 gi|282163659|ref|YP_003356044.1| - 0.025 15.0 0.2 1.5 9.2 0.0 2.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DJ-1_PfpI PF01965.19 gi|282163659|ref|YP_003356044.1| - 0.029 13.8 0.7 0.22 10.9 0.0 2.4 2 1 1 3 3 2 0 DJ-1/PfpI family UDPG_MGDP_dh_N PF03721.9 gi|282163659|ref|YP_003356044.1| - 0.034 13.5 0.2 0.23 10.8 0.0 2.4 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K_oxygenase PF13434.1 gi|282163659|ref|YP_003356044.1| - 0.041 12.7 0.0 6 5.6 0.0 2.5 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) XdhC_C PF13478.1 gi|282163659|ref|YP_003356044.1| - 0.067 13.5 0.2 2.2 8.5 0.0 2.8 3 0 0 3 3 2 0 XdhC Rossmann domain PrpR_N PF06506.6 gi|282163659|ref|YP_003356044.1| - 0.067 12.5 1.1 31 3.9 0.1 3.3 3 0 0 3 3 3 0 Propionate catabolism activator Fer4_18 PF13746.1 gi|282163659|ref|YP_003356044.1| - 0.083 13.3 0.2 0.083 13.3 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Lycopene_cycl PF05834.7 gi|282163659|ref|YP_003356044.1| - 0.094 11.6 0.3 0.19 10.6 0.2 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein FMO-like PF00743.14 gi|282163659|ref|YP_003356044.1| - 0.13 10.4 0.0 1.2 7.2 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like ThiF PF00899.16 gi|282163659|ref|YP_003356044.1| - 0.22 11.3 1.9 1 9.2 0.1 2.3 2 0 0 2 2 2 0 ThiF family Trp_halogenase PF04820.9 gi|282163659|ref|YP_003356044.1| - 0.53 8.8 2.6 0.35 9.4 0.2 1.7 2 0 0 2 2 2 0 Tryptophan halogenase DHODB_Fe-S_bind PF10418.4 gi|282163660|ref|YP_003356045.1| - 3.4e-12 45.6 4.1 6.1e-12 44.8 2.8 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|282163660|ref|YP_003356045.1| - 3.5e-12 46.8 0.0 6.5e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|282163660|ref|YP_003356045.1| - 2e-05 24.6 0.0 3.9e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|282163660|ref|YP_003356045.1| - 0.02 14.8 0.1 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 Ferric reductase NAD binding domain Fer2_3 PF13085.1 gi|282163660|ref|YP_003356045.1| - 0.043 13.6 0.7 0.088 12.6 0.5 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain ABC_tran PF00005.22 gi|282163661|ref|YP_003356046.1| - 6.4e-24 84.8 0.0 1.1e-23 84.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163661|ref|YP_003356046.1| - 2.9e-15 57.0 0.0 2.2e-12 47.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|282163661|ref|YP_003356046.1| - 5.8e-05 23.5 0.1 0.0001 22.7 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) BCA_ABC_TP_C PF12399.3 gi|282163661|ref|YP_003356046.1| - 0.00034 20.2 0.0 0.0048 16.5 0.0 2.4 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_15 PF13175.1 gi|282163661|ref|YP_003356046.1| - 0.0031 16.6 0.0 0.024 13.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.17 gi|282163661|ref|YP_003356046.1| - 0.0087 15.5 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|282163661|ref|YP_003356046.1| - 0.023 14.2 0.1 0.049 13.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|282163661|ref|YP_003356046.1| - 0.039 14.2 0.3 0.09 13.0 0.2 1.6 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.2 gi|282163662|ref|YP_003356047.1| - 3.8e-49 167.0 11.3 4.4e-49 166.7 7.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282163662|ref|YP_003356047.1| - 2.7e-23 82.3 4.2 2.7e-23 82.3 2.9 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|282163662|ref|YP_003356047.1| - 3.2e-11 42.8 10.8 3.2e-11 42.8 7.5 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|282163662|ref|YP_003356047.1| - 1.2e-07 31.2 14.6 1.2e-07 31.2 10.1 2.7 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|282163662|ref|YP_003356047.1| - 0.00027 20.1 15.7 0.00027 20.1 10.9 2.8 3 0 0 3 3 3 1 ABC-2 type transporter Bap31 PF05529.7 gi|282163662|ref|YP_003356047.1| - 0.011 15.2 0.4 0.033 13.6 0.3 1.8 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like Suppressor_APC PF11414.3 gi|282163662|ref|YP_003356047.1| - 0.035 13.9 0.8 0.062 13.0 0.5 1.3 1 0 0 1 1 1 0 Adenomatous polyposis coli tumour suppressor protein GspL_C PF12693.2 gi|282163662|ref|YP_003356047.1| - 0.036 13.8 0.1 0.075 12.8 0.1 1.5 1 0 0 1 1 1 0 GspL periplasmic domain Cast PF10174.4 gi|282163662|ref|YP_003356047.1| - 0.11 10.5 0.9 0.15 10.1 0.6 1.0 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone TarH PF02203.10 gi|282163662|ref|YP_003356047.1| - 0.16 11.8 0.1 0.16 11.8 0.1 2.8 2 0 0 2 2 1 0 Tar ligand binding domain homologue Claudin_2 PF13903.1 gi|282163662|ref|YP_003356047.1| - 0.19 11.3 0.1 0.19 11.3 0.1 3.5 4 0 0 4 4 4 0 PMP-22/EMP/MP20/Claudin tight junction DUF2157 PF09925.4 gi|282163662|ref|YP_003356047.1| - 1 8.9 9.1 3.9 7.0 5.0 2.6 3 0 0 3 3 3 0 Predicted membrane protein (DUF2157) DivIC PF04977.10 gi|282163662|ref|YP_003356047.1| - 1.9 8.0 5.1 7.3 6.1 2.2 2.7 2 1 0 2 2 2 0 Septum formation initiator DUF4293 PF14126.1 gi|282163662|ref|YP_003356047.1| - 2.4 8.0 10.0 28 4.6 6.1 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4293) DUF1469 PF07332.6 gi|282163662|ref|YP_003356047.1| - 5.4 6.7 0.0 5.4 6.7 0.0 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF1469) NPCBM_assoc PF10633.4 gi|282163663|ref|YP_003356048.1| - 2.4e-21 75.5 5.8 6.6e-18 64.5 0.4 4.3 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.3 gi|282163663|ref|YP_003356048.1| - 1.3e-08 34.9 2.2 0.12 12.4 0.0 3.7 2 1 0 3 3 3 3 IG-like fold at C-terminal of FixG, putative oxidoreductase CARDB PF07705.6 gi|282163663|ref|YP_003356048.1| - 0.00051 20.0 1.9 0.00051 20.0 1.3 3.5 2 1 2 4 4 4 1 CARDB DUF1034 PF06280.7 gi|282163663|ref|YP_003356048.1| - 0.0018 18.6 11.7 0.67 10.3 0.1 5.3 4 3 0 4 4 4 2 Fn3-like domain (DUF1034) DUF11 PF01345.13 gi|282163663|ref|YP_003356048.1| - 0.0034 17.4 1.7 0.0034 17.4 1.2 4.2 4 1 1 5 5 5 2 Domain of unknown function DUF11 Alpha_adaptinC2 PF02883.15 gi|282163663|ref|YP_003356048.1| - 0.0047 17.2 0.8 0.031 14.5 0.1 2.6 2 1 1 3 3 3 1 Adaptin C-terminal domain Inhibitor_I42 PF09394.5 gi|282163663|ref|YP_003356048.1| - 0.14 12.4 2.2 0.29 11.4 0.2 2.4 2 0 0 2 2 2 0 Chagasin family peptidase inhibitor I42 CorA PF01544.13 gi|282163664|ref|YP_003356049.1| - 2.7e-42 144.7 5.9 3.2e-42 144.5 4.1 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein RepB PF07506.6 gi|282163664|ref|YP_003356049.1| - 0.05 13.4 0.0 0.085 12.7 0.0 1.4 1 0 0 1 1 1 0 RepB plasmid partitioning protein Trypsin_2 PF13365.1 gi|282163665|ref|YP_003356050.1| - 9e-24 83.7 0.3 1.3e-23 83.2 0.2 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|282163665|ref|YP_003356050.1| - 1.7e-14 53.9 0.0 2.8e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|282163665|ref|YP_003356050.1| - 1.8e-12 46.9 0.0 4e-12 45.8 0.0 1.6 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|282163665|ref|YP_003356050.1| - 1.7e-05 24.9 0.2 6.8e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|282163665|ref|YP_003356050.1| - 2.3e-05 23.0 0.3 0.089 11.1 0.3 2.1 2 0 0 2 2 2 2 Peptidase S46 GRASP55_65 PF04495.9 gi|282163665|ref|YP_003356050.1| - 0.00039 20.4 0.0 0.00085 19.3 0.0 1.5 1 0 0 1 1 1 1 GRASP55/65 PDZ-like domain Peptidase_S7 PF00949.16 gi|282163665|ref|YP_003356050.1| - 0.031 13.6 0.1 0.054 12.8 0.1 1.3 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease Peptidase_S32 PF05579.8 gi|282163665|ref|YP_003356050.1| - 0.15 11.0 0.9 3.4 6.5 0.1 2.3 1 1 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 NODP PF07684.7 gi|282163665|ref|YP_003356050.1| - 0.16 11.6 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 NOTCH protein Peptidase_M48 PF01435.13 gi|282163666|ref|YP_003356051.1| - 1.3e-41 142.6 0.0 1.7e-41 142.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|282163666|ref|YP_003356051.1| - 4.6e-09 35.6 0.2 7.1e-09 35.0 0.1 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF1469 PF07332.6 gi|282163666|ref|YP_003356051.1| - 0.24 11.1 2.4 0.28 10.9 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) SUR7 PF06687.7 gi|282163666|ref|YP_003356051.1| - 1.2 8.6 11.0 0.04 13.4 0.7 2.1 2 0 0 2 2 2 0 SUR7/PalI family ABC2_membrane_2 PF12679.2 gi|282163666|ref|YP_003356051.1| - 2.5 6.8 10.2 0.44 9.3 1.1 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein MgtE PF01769.11 gi|282163666|ref|YP_003356051.1| - 5.7 7.2 8.8 0.33 11.2 1.3 2.0 2 0 0 2 2 2 0 Divalent cation transporter Eno-Rase_NADH_b PF12242.3 gi|282163667|ref|YP_003356052.1| - 0.13 12.0 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Peptidase_M24 PF00557.19 gi|282163668|ref|YP_003356053.1| - 6.5e-41 140.1 0.0 6.8e-41 140.1 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 SH3_9 PF14604.1 gi|282163668|ref|YP_003356053.1| - 0.024 14.1 0.0 2 8.0 0.0 2.4 2 0 0 2 2 2 0 Variant SH3 domain ApbE PF02424.10 gi|282163668|ref|YP_003356053.1| - 0.064 12.5 0.7 0.073 12.3 0.0 1.5 2 0 0 2 2 2 0 ApbE family Peptidase_C6 PF00851.13 gi|282163668|ref|YP_003356053.1| - 0.11 11.0 0.0 0.15 10.6 0.0 1.1 1 0 0 1 1 1 0 Helper component proteinase Nitroreductase PF00881.19 gi|282163669|ref|YP_003356054.1| - 3.7e-32 111.4 0.0 4.2e-32 111.2 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family Sua5_yciO_yrdC PF01300.13 gi|282163670|ref|YP_003356055.1| - 8.5e-48 161.9 0.0 9.9e-48 161.7 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination DUF356 PF04009.7 gi|282163671|ref|YP_003356056.1| - 7.5e-39 132.0 0.4 8.8e-39 131.8 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) AAA PF00004.24 gi|282163672|ref|YP_003356057.1| - 1.1e-44 151.8 0.0 2.5e-44 150.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|282163672|ref|YP_003356057.1| - 9e-09 35.1 0.2 6.8e-08 32.3 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|282163672|ref|YP_003356057.1| - 3.3e-07 30.4 0.1 3.4e-05 23.9 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_2 PF07724.9 gi|282163672|ref|YP_003356057.1| - 8.8e-07 28.9 0.0 2.5e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|282163672|ref|YP_003356057.1| - 2.7e-06 27.5 0.2 0.0014 18.7 0.1 2.5 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|282163672|ref|YP_003356057.1| - 1.4e-05 24.3 0.0 3.6e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|282163672|ref|YP_003356057.1| - 6.2e-05 22.0 0.0 0.00013 21.0 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_19 PF13245.1 gi|282163672|ref|YP_003356057.1| - 0.00031 20.4 0.1 0.00069 19.3 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|282163672|ref|YP_003356057.1| - 0.00031 20.6 0.0 0.00075 19.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|282163672|ref|YP_003356057.1| - 0.00058 19.3 0.0 0.0013 18.1 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|282163672|ref|YP_003356057.1| - 0.00074 18.6 0.0 0.0013 17.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.1 gi|282163672|ref|YP_003356057.1| - 0.00085 20.1 0.4 0.0034 18.1 0.0 2.2 2 1 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|282163672|ref|YP_003356057.1| - 0.0014 18.6 0.0 0.005 16.8 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain TIP49 PF06068.8 gi|282163672|ref|YP_003356057.1| - 0.0016 17.2 0.0 0.0037 16.0 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_3 PF07726.6 gi|282163672|ref|YP_003356057.1| - 0.0027 17.3 0.0 0.009 15.6 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|282163672|ref|YP_003356057.1| - 0.0031 17.1 0.2 0.0097 15.5 0.2 1.8 1 1 0 1 1 1 1 AAA domain Filament PF00038.16 gi|282163672|ref|YP_003356057.1| - 0.0034 16.8 1.9 0.0073 15.8 1.3 1.5 1 0 0 1 1 1 1 Intermediate filament protein RNA_helicase PF00910.17 gi|282163672|ref|YP_003356057.1| - 0.0052 16.9 0.0 0.034 14.3 0.0 2.4 3 0 0 3 3 2 1 RNA helicase CCDC155 PF14662.1 gi|282163672|ref|YP_003356057.1| - 0.0062 16.1 0.9 0.0062 16.1 0.6 1.9 2 0 0 2 2 1 1 Coiled-coil region of CCDC155 Sigma54_activat PF00158.21 gi|282163672|ref|YP_003356057.1| - 0.0079 15.6 0.1 0.1 12.0 0.1 2.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_28 PF13521.1 gi|282163672|ref|YP_003356057.1| - 0.009 15.9 0.6 0.021 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|282163672|ref|YP_003356057.1| - 0.0094 15.1 2.0 0.016 14.4 0.1 2.2 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|282163672|ref|YP_003356057.1| - 0.01 15.7 0.0 0.031 14.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain Parvo_NS1 PF01057.12 gi|282163672|ref|YP_003356057.1| - 0.013 14.3 0.1 0.048 12.5 0.0 1.8 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|282163672|ref|YP_003356057.1| - 0.014 15.1 0.1 0.07 12.8 0.1 2.2 1 1 0 1 1 1 0 NTPase AAA_18 PF13238.1 gi|282163672|ref|YP_003356057.1| - 0.014 15.6 0.9 0.042 14.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|282163672|ref|YP_003356057.1| - 0.02 14.2 2.9 0.087 12.2 0.2 2.6 2 1 1 3 3 2 0 AAA domain PhoH PF02562.11 gi|282163672|ref|YP_003356057.1| - 0.033 13.4 0.0 0.072 12.3 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein KaiC PF06745.8 gi|282163672|ref|YP_003356057.1| - 0.036 13.1 3.3 0.076 12.1 0.0 2.5 2 1 1 3 3 3 0 KaiC Arch_ATPase PF01637.13 gi|282163672|ref|YP_003356057.1| - 0.039 13.6 2.1 0.2 11.3 0.1 2.6 2 1 0 2 2 2 0 Archaeal ATPase AAA_30 PF13604.1 gi|282163672|ref|YP_003356057.1| - 0.041 13.4 0.0 0.12 11.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|282163672|ref|YP_003356057.1| - 0.052 12.4 0.0 0.099 11.4 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.7 gi|282163672|ref|YP_003356057.1| - 0.075 12.6 0.1 0.36 10.4 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_11 PF13086.1 gi|282163672|ref|YP_003356057.1| - 0.09 12.3 0.1 0.79 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF972 PF06156.8 gi|282163672|ref|YP_003356057.1| - 0.095 13.0 1.3 0.25 11.7 0.5 2.0 2 0 0 2 2 1 0 Protein of unknown function (DUF972) PPV_E1_C PF00519.12 gi|282163672|ref|YP_003356057.1| - 0.1 11.2 0.1 7.5 5.0 0.0 2.1 2 0 0 2 2 2 0 Papillomavirus helicase APG6 PF04111.7 gi|282163672|ref|YP_003356057.1| - 0.22 10.5 1.9 0.41 9.6 1.3 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 Mto2_bdg PF12808.2 gi|282163672|ref|YP_003356057.1| - 2.3 8.3 8.5 6.8 6.8 5.9 1.9 1 0 0 1 1 1 0 Micro-tubular organiser Mto1 C-term Mto2-binding region HTH_3 PF01381.17 gi|282163673|ref|YP_003356058.1| - 3.2e-08 33.2 1.2 4.7e-08 32.7 0.8 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|282163673|ref|YP_003356058.1| - 0.00041 20.3 0.3 0.00069 19.6 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|282163673|ref|YP_003356058.1| - 0.017 15.2 0.0 0.034 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain CDP-OH_P_transf PF01066.16 gi|282163674|ref|YP_003356059.1| - 1.1e-16 61.0 8.2 1.1e-16 61.0 5.7 2.0 1 1 1 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF202 PF02656.10 gi|282163674|ref|YP_003356059.1| - 1.9 8.7 7.6 1.9e+02 2.3 5.3 3.1 1 1 0 1 1 1 0 Domain of unknown function (DUF202) AAA_18 PF13238.1 gi|282163675|ref|YP_003356060.1| - 2.1e-22 79.8 0.0 2.7e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|282163675|ref|YP_003356060.1| - 9.9e-15 55.4 0.1 1.5e-14 54.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|282163675|ref|YP_003356060.1| - 5.4e-05 23.0 0.2 0.018 14.8 0.1 2.5 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|282163675|ref|YP_003356060.1| - 0.00016 21.6 0.8 0.0027 17.5 0.5 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.1 gi|282163675|ref|YP_003356060.1| - 0.00016 21.6 0.1 0.0012 18.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|282163675|ref|YP_003356060.1| - 0.0011 18.7 0.1 0.0021 17.7 0.0 1.7 1 1 0 1 1 1 1 Part of AAA domain ADK PF00406.17 gi|282163675|ref|YP_003356060.1| - 0.0071 16.2 0.1 0.5 10.2 0.0 2.2 1 1 1 2 2 2 1 Adenylate kinase AAA PF00004.24 gi|282163675|ref|YP_003356060.1| - 0.017 15.3 0.0 0.03 14.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|282163675|ref|YP_003356060.1| - 0.019 14.7 0.3 0.18 11.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) CoaE PF01121.15 gi|282163675|ref|YP_003356060.1| - 0.022 14.1 0.3 0.12 11.7 0.1 1.9 2 0 0 2 2 2 0 Dephospho-CoA kinase ArgK PF03308.11 gi|282163675|ref|YP_003356060.1| - 0.024 13.4 1.0 0.065 12.0 0.7 1.8 1 1 0 1 1 1 0 ArgK protein NTPase_1 PF03266.10 gi|282163675|ref|YP_003356060.1| - 0.042 13.5 0.1 0.092 12.4 0.1 1.6 1 0 0 1 1 1 0 NTPase APS_kinase PF01583.15 gi|282163675|ref|YP_003356060.1| - 0.051 13.2 0.1 0.086 12.4 0.0 1.7 1 1 0 1 1 1 0 Adenylylsulphate kinase AAA_29 PF13555.1 gi|282163675|ref|YP_003356060.1| - 0.052 13.0 0.1 0.094 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|282163675|ref|YP_003356060.1| - 0.085 12.5 0.3 5 6.8 0.1 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B KaiC PF06745.8 gi|282163675|ref|YP_003356060.1| - 0.087 11.9 1.5 2.1 7.4 0.2 2.1 2 0 0 2 2 2 0 KaiC Baculo_helicase PF04735.7 gi|282163675|ref|YP_003356060.1| - 0.14 9.4 0.0 0.18 9.1 0.0 1.1 1 0 0 1 1 1 0 Baculovirus DNA helicase ABC_tran PF00005.22 gi|282163675|ref|YP_003356060.1| - 0.16 12.2 0.2 0.19 12.0 0.1 1.6 1 1 0 1 1 1 0 ABC transporter Aminotran_1_2 PF00155.16 gi|282163676|ref|YP_003356061.1| - 9.8e-61 205.6 0.0 1.1e-60 205.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|282163676|ref|YP_003356061.1| - 9.4e-08 30.7 0.0 2e-07 29.6 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|282163676|ref|YP_003356061.1| - 1.4e-07 30.6 0.0 3.2e-07 29.4 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|282163676|ref|YP_003356061.1| - 3.2e-05 23.1 0.0 4.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|282163676|ref|YP_003356061.1| - 6.8e-05 21.6 0.0 9.1e-05 21.2 0.0 1.2 1 0 0 1 1 1 1 Allinase AMP-binding PF00501.23 gi|282163677|ref|YP_003356062.1| - 0.00015 20.2 0.0 0.00024 19.6 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme zinc_ribbon_2 PF13240.1 gi|282163678|ref|YP_003356063.1| - 0.00042 19.7 1.1 0.00091 18.6 0.7 1.6 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|282163678|ref|YP_003356063.1| - 0.0072 16.1 6.1 0.0092 15.7 4.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-FCS PF06467.9 gi|282163678|ref|YP_003356063.1| - 0.021 14.4 1.5 0.062 12.9 0.1 2.0 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zf-RING_4 PF14570.1 gi|282163678|ref|YP_003356063.1| - 0.026 14.0 2.3 0.041 13.4 1.6 1.4 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain HypA PF01155.14 gi|282163678|ref|YP_003356063.1| - 0.11 12.2 4.4 0.12 12.0 3.0 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|282163678|ref|YP_003356063.1| - 0.55 9.9 4.7 0.95 9.2 3.3 1.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C3HC4_3 PF13920.1 gi|282163678|ref|YP_003356063.1| - 0.61 9.8 5.6 0.87 9.3 3.9 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ISL3 PF14690.1 gi|282163678|ref|YP_003356063.1| - 1 9.4 4.9 8.5 6.5 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|282163678|ref|YP_003356063.1| - 1.7 7.9 6.8 1.7 7.9 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Alba PF01918.16 gi|282163679|ref|YP_003356064.1| - 2.2e-19 68.8 0.5 3.6e-19 68.1 0.3 1.4 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|282163679|ref|YP_003356064.1| - 0.0081 15.8 0.4 0.011 15.4 0.2 1.4 1 1 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P Lactamase_B PF00753.22 gi|282163681|ref|YP_003356066.1| - 2.6e-26 92.4 0.1 3.3e-26 92.1 0.1 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|282163681|ref|YP_003356066.1| - 0.00018 21.1 0.0 0.00027 20.5 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|282163681|ref|YP_003356066.1| - 0.072 12.0 0.2 0.1 11.4 0.2 1.1 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II Lactamase_B_3 PF13483.1 gi|282163681|ref|YP_003356066.1| - 0.13 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain NikR_C PF08753.6 gi|282163681|ref|YP_003356066.1| - 0.25 11.2 1.5 51 3.8 0.7 3.2 2 1 1 3 3 3 0 NikR C terminal nickel binding domain ABC_tran PF00005.22 gi|282163682|ref|YP_003356067.1| - 1.2e-18 67.6 0.0 4e-18 66.0 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163682|ref|YP_003356067.1| - 3.4e-09 37.1 4.5 1e-07 32.2 0.2 3.0 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|282163682|ref|YP_003356067.1| - 0.00038 20.8 0.1 0.00066 20.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|282163682|ref|YP_003356067.1| - 0.00043 19.7 0.0 0.001 18.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Wzt_C PF14524.1 gi|282163682|ref|YP_003356067.1| - 0.0048 16.6 0.1 0.0083 15.8 0.1 1.3 1 0 0 1 1 1 1 Wzt C-terminal domain DUF258 PF03193.11 gi|282163682|ref|YP_003356067.1| - 0.029 13.5 0.0 0.057 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF223 PF02721.9 gi|282163682|ref|YP_003356067.1| - 0.095 12.7 0.0 0.26 11.3 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function DUF223 SMC_N PF02463.14 gi|282163682|ref|YP_003356067.1| - 0.17 11.1 0.1 0.46 9.6 0.0 1.7 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|282163682|ref|YP_003356067.1| - 0.19 11.1 0.4 0.39 10.0 0.1 1.6 2 0 0 2 2 2 0 AAA-like domain ABC2_membrane PF01061.19 gi|282163683|ref|YP_003356068.1| - 9.4e-12 44.5 31.2 9.4e-12 44.5 21.6 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|282163683|ref|YP_003356068.1| - 0.071 12.1 42.9 0.0038 16.3 24.4 1.9 1 1 1 2 2 2 0 ABC-2 family transporter protein CbiX PF01903.12 gi|282163684|ref|YP_003356069.1| - 7.3e-09 35.6 0.0 0.0013 18.8 0.0 2.5 2 1 0 2 2 2 2 CbiX PRA1 PF03208.14 gi|282163685|ref|YP_003356070.1| - 1.4 8.2 5.3 1.2 8.4 2.7 1.5 1 1 0 1 1 1 0 PRA1 family protein TcpE PF12648.2 gi|282163685|ref|YP_003356070.1| - 2.4 8.3 5.5 2.6 8.2 3.8 1.0 1 0 0 1 1 1 0 TcpE family OppC_N PF12911.2 gi|282163685|ref|YP_003356070.1| - 5.1 6.5 6.7 4.5 6.7 4.1 1.5 1 1 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DUF4131 PF13567.1 gi|282163685|ref|YP_003356070.1| - 5.1 6.4 5.2 5.6 6.3 3.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PKD PF00801.15 gi|282163687|ref|YP_003356072.1| - 1.8e-22 78.8 11.9 7e-12 44.9 0.9 2.5 2 0 0 2 2 2 2 PKD domain CARDB PF07705.6 gi|282163687|ref|YP_003356072.1| - 0.027 14.5 0.5 1.4 9.0 0.0 2.4 2 0 0 2 2 2 0 CARDB CBM_6 PF03422.10 gi|282163687|ref|YP_003356072.1| - 1 9.5 5.4 1.3 9.1 0.4 2.7 3 0 0 3 3 3 0 Carbohydrate binding module (family 6) DUF4366 PF14283.1 gi|282163687|ref|YP_003356072.1| - 3.9 6.8 0.0 3.9 6.8 0.0 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4366) tRNA_anti-codon PF01336.20 gi|282163689|ref|YP_003356074.1| - 0.00066 19.4 0.0 0.079 12.8 0.0 3.1 2 1 0 2 2 2 1 OB-fold nucleic acid binding domain Sox_C_TAD PF12067.3 gi|282163690|ref|YP_003356075.1| - 0.0077 16.4 0.1 0.0096 16.1 0.0 1.1 1 0 0 1 1 1 1 Sox C-terminal transactivation domain DUF3782 PF12644.2 gi|282163690|ref|YP_003356075.1| - 0.61 9.9 3.0 1.6 8.5 2.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) Osmo_CC PF08946.5 gi|282163690|ref|YP_003356075.1| - 1.5 8.8 5.1 0.37 10.8 1.0 1.8 1 1 1 2 2 2 0 Osmosensory transporter coiled coil DUF294 PF03445.8 gi|282163691|ref|YP_003356076.1| - 1.6e-30 105.5 0.0 2.9e-30 104.6 0.0 1.4 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DUF294_C PF10335.4 gi|282163691|ref|YP_003356076.1| - 1.1e-23 83.4 0.0 4.8e-23 81.4 0.0 2.0 3 0 0 3 3 3 1 Putative nucleotidyltransferase substrate binding domain AP_endonuc_2 PF01261.19 gi|282163691|ref|YP_003356076.1| - 5e-19 68.4 0.0 8.7e-19 67.6 0.0 1.4 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel GlnE PF03710.10 gi|282163691|ref|YP_003356076.1| - 0.0052 16.0 0.0 0.025 13.8 0.0 1.9 2 0 0 2 2 2 1 Glutamate-ammonia ligase adenylyltransferase TctB PF07331.6 gi|282163692|ref|YP_003356077.1| - 0.42 10.2 5.6 0.65 9.6 3.9 1.3 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family COPI_assoc PF08507.5 gi|282163692|ref|YP_003356077.1| - 1.3 8.7 9.7 1.6 8.4 6.7 1.1 1 0 0 1 1 1 0 COPI associated protein DUF202 PF02656.10 gi|282163692|ref|YP_003356077.1| - 2.2 8.5 8.3 35 4.6 5.8 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF3040 PF11239.3 gi|282163692|ref|YP_003356077.1| - 3.3 7.8 7.9 6.7 6.8 5.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) Tetraspannin PF00335.15 gi|282163692|ref|YP_003356077.1| - 6.9 5.8 11.3 7.8 5.6 7.8 1.0 1 0 0 1 1 1 0 Tetraspanin family PmbA_TldD PF01523.11 gi|282163694|ref|YP_003356079.1| - 5.9e-59 199.7 0.8 7.6e-59 199.3 0.5 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|282163695|ref|YP_003356080.1| - 5.2e-68 229.4 0.2 7.1e-68 229.0 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase VWA_2 PF13519.1 gi|282163696|ref|YP_003356081.1| - 3.7e-09 36.9 0.1 5.1e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|282163696|ref|YP_003356081.1| - 0.0009 18.9 0.0 0.0039 16.9 0.0 2.0 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|282163696|ref|YP_003356081.1| - 0.0012 18.0 0.1 0.85 8.7 0.0 2.2 2 0 0 2 2 2 2 VWA domain containing CoxE-like protein AAA_5 PF07728.9 gi|282163697|ref|YP_003356082.1| - 6.5e-21 74.5 0.0 2.1e-20 72.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|282163697|ref|YP_003356082.1| - 5.4e-07 29.2 0.0 3.7e-06 26.5 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|282163697|ref|YP_003356082.1| - 6.3e-06 26.4 0.0 2e-05 24.8 0.0 2.2 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|282163697|ref|YP_003356082.1| - 2.8e-05 23.3 0.0 0.00062 18.9 0.0 2.4 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|282163697|ref|YP_003356082.1| - 5.4e-05 23.3 0.0 0.0011 19.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|282163697|ref|YP_003356082.1| - 7.7e-05 21.8 0.0 0.00014 20.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.1 gi|282163697|ref|YP_003356082.1| - 0.00074 20.3 0.0 0.0016 19.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|282163697|ref|YP_003356082.1| - 0.0013 18.9 0.1 0.0085 16.2 0.0 2.6 3 1 0 3 3 2 1 RNA helicase AAA_18 PF13238.1 gi|282163697|ref|YP_003356082.1| - 0.0022 18.3 0.0 0.0046 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|282163697|ref|YP_003356082.1| - 0.0049 16.7 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|282163697|ref|YP_003356082.1| - 0.014 15.1 0.0 0.04 13.6 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain NB-ARC PF00931.17 gi|282163697|ref|YP_003356082.1| - 0.024 13.4 0.0 0.039 12.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain RuvB_N PF05496.7 gi|282163697|ref|YP_003356082.1| - 0.029 13.4 0.0 0.077 12.0 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|282163697|ref|YP_003356082.1| - 0.03 14.2 0.0 0.71 9.7 0.0 2.9 4 0 0 4 4 4 0 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|282163697|ref|YP_003356082.1| - 0.038 13.8 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|282163697|ref|YP_003356082.1| - 0.046 13.2 0.1 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|282163697|ref|YP_003356082.1| - 0.053 13.2 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Clathrin-link PF09268.5 gi|282163697|ref|YP_003356082.1| - 0.055 12.5 0.3 0.34 10.0 0.1 2.4 2 0 0 2 2 2 0 Clathrin, heavy-chain linker IstB_IS21 PF01695.12 gi|282163697|ref|YP_003356082.1| - 0.083 12.3 0.0 0.19 11.1 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein PIF1 PF05970.9 gi|282163697|ref|YP_003356082.1| - 0.093 11.6 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase T2SE PF00437.15 gi|282163697|ref|YP_003356082.1| - 0.1 11.4 0.0 0.23 10.3 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein NACHT PF05729.7 gi|282163697|ref|YP_003356082.1| - 0.12 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|282163697|ref|YP_003356082.1| - 0.13 12.1 0.0 0.4 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF962 PF06127.6 gi|282163698|ref|YP_003356083.1| - 0.031 14.1 1.0 0.065 13.1 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF962) TRM PF02005.11 gi|282163699|ref|YP_003356084.1| - 6.9e-101 337.8 0.0 8.5e-101 337.5 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.9 gi|282163699|ref|YP_003356084.1| - 0.0059 15.9 0.0 0.0099 15.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain zf-C3HC4_3 PF13920.1 gi|282163699|ref|YP_003356084.1| - 0.018 14.6 0.1 0.047 13.3 0.1 1.7 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Methyltransf_31 PF13847.1 gi|282163699|ref|YP_003356084.1| - 0.05 13.2 0.0 0.098 12.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DZR PF12773.2 gi|282163699|ref|YP_003356084.1| - 0.075 12.8 0.5 0.27 11.0 0.2 2.0 2 0 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|282163699|ref|YP_003356084.1| - 0.096 11.9 1.5 0.79 9.0 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|282163699|ref|YP_003356084.1| - 0.13 12.1 1.2 0.36 10.8 0.9 1.7 1 0 0 1 1 1 0 Zinc ribbon domain DUF3795 PF12675.2 gi|282163700|ref|YP_003356085.1| - 3.8e-15 55.8 8.1 3.8e-15 55.8 5.6 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3795) zinc_ribbon_2 PF13240.1 gi|282163700|ref|YP_003356085.1| - 0.0007 19.0 0.6 0.0007 19.0 0.4 3.2 3 0 0 3 3 3 1 zinc-ribbon domain UPF0547 PF10571.4 gi|282163700|ref|YP_003356085.1| - 0.0025 17.4 2.2 0.0025 17.4 1.5 3.4 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|282163700|ref|YP_003356085.1| - 0.0028 17.4 1.8 0.0028 17.4 1.2 3.2 1 1 1 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|282163700|ref|YP_003356085.1| - 0.012 14.7 2.1 0.012 14.7 1.4 3.7 3 1 0 3 3 3 0 zinc-ribbon domain DUF3279 PF11682.3 gi|282163700|ref|YP_003356085.1| - 0.022 14.3 0.3 0.022 14.3 0.2 2.1 3 1 0 3 3 3 0 Protein of unknown function (DUF3279) Prok-RING_1 PF14446.1 gi|282163700|ref|YP_003356085.1| - 0.051 13.3 1.7 0.051 13.3 1.2 3.4 3 1 0 3 3 3 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|282163700|ref|YP_003356085.1| - 0.08 12.6 0.6 0.08 12.6 0.4 2.3 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C4H2 PF10146.4 gi|282163700|ref|YP_003356085.1| - 0.3 11.0 1.3 0.54 10.2 0.9 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein LST1 PF05083.8 gi|282163701|ref|YP_003356086.1| - 0.22 11.5 2.1 0.3 11.1 1.4 1.3 1 0 0 1 1 1 0 LST-1 protein Baculo_11_kDa PF06143.6 gi|282163701|ref|YP_003356086.1| - 2.8 7.3 7.2 3.7 6.9 5.0 1.1 1 0 0 1 1 1 0 Baculovirus 11 kDa family HATPase_c PF02518.21 gi|282163702|ref|YP_003356087.1| - 2.6e-15 56.0 0.0 4.4e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|282163702|ref|YP_003356087.1| - 8.7e-12 45.2 0.0 1.5e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|282163702|ref|YP_003356087.1| - 3e-07 31.0 0.0 5.3e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|282163702|ref|YP_003356087.1| - 1.7e-06 27.8 0.0 2.9e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.21 gi|282163702|ref|YP_003356087.1| - 2.6e-06 27.6 0.0 4.4e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|282163702|ref|YP_003356087.1| - 9.1e-05 22.1 0.0 0.00033 20.3 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PhosphMutase PF10143.4 gi|282163702|ref|YP_003356087.1| - 0.067 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase FTR_C PF02741.10 gi|282163703|ref|YP_003356088.1| - 1.7e-68 229.1 2.6 2.5e-68 228.5 1.8 1.3 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.13 gi|282163703|ref|YP_003356088.1| - 8.8e-61 203.8 0.0 1.5e-60 203.1 0.0 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase Flg_bb_rod PF00460.15 gi|282163703|ref|YP_003356088.1| - 0.2 11.4 1.3 0.41 10.4 0.9 1.5 1 0 0 1 1 1 0 Flagella basal body rod protein Fer4_13 PF13370.1 gi|282163704|ref|YP_003356089.1| - 2.6e-15 56.5 8.2 3e-15 56.3 5.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|282163704|ref|YP_003356089.1| - 1.7e-14 54.1 9.5 2.7e-14 53.4 6.6 1.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|282163704|ref|YP_003356089.1| - 3.8e-08 32.5 6.5 3.8e-07 29.4 2.4 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282163704|ref|YP_003356089.1| - 8.6e-08 32.4 21.3 0.00013 22.2 8.6 1.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282163704|ref|YP_003356089.1| - 3.7e-06 27.1 10.8 5.9e-06 26.4 7.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282163704|ref|YP_003356089.1| - 1.1e-05 25.0 2.8 1.1e-05 25.0 1.9 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282163704|ref|YP_003356089.1| - 2.2e-05 24.1 12.2 4e-05 23.3 8.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282163704|ref|YP_003356089.1| - 6.9e-05 22.5 3.3 6.9e-05 22.5 2.3 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_19 PF06902.6 gi|282163704|ref|YP_003356089.1| - 0.00011 21.8 5.4 0.00016 21.4 3.7 1.2 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_21 PF14697.1 gi|282163704|ref|YP_003356089.1| - 0.00048 19.9 9.9 0.00074 19.3 6.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282163704|ref|YP_003356089.1| - 0.0005 20.1 1.0 0.0005 20.1 0.7 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282163704|ref|YP_003356089.1| - 0.002 18.8 11.5 0.13 13.0 2.2 2.5 1 1 2 3 3 3 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|282163704|ref|YP_003356089.1| - 0.034 14.7 15.7 0.082 13.5 2.5 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|282163704|ref|YP_003356089.1| - 0.054 13.8 2.1 0.054 13.8 1.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282163704|ref|YP_003356089.1| - 0.06 13.7 2.7 0.06 13.7 1.9 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282163704|ref|YP_003356089.1| - 0.26 11.3 13.5 1.8 8.6 9.4 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain P12 PF12669.2 gi|282163704|ref|YP_003356089.1| - 4.7 7.4 9.4 5.1 7.3 1.7 2.1 2 0 0 2 2 2 0 Virus attachment protein p12 family DUF2099 PF09872.4 gi|282163705|ref|YP_003356090.1| - 2.4e-108 361.0 1.2 2.7e-108 360.8 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) DUF1021 PF06257.6 gi|282163705|ref|YP_003356090.1| - 0.071 12.8 0.2 0.15 11.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1021) Methyltransf_23 PF13489.1 gi|282163706|ref|YP_003356091.1| - 4.8e-11 42.6 0.0 1.7e-10 40.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282163706|ref|YP_003356091.1| - 2.1e-09 37.7 0.0 1.1e-08 35.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|282163706|ref|YP_003356091.1| - 2.4e-08 33.5 0.1 3.6e-08 33.0 0.1 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.1 gi|282163706|ref|YP_003356091.1| - 5e-06 26.8 0.0 9.2e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282163706|ref|YP_003356091.1| - 0.00013 22.5 0.4 0.00095 19.7 0.1 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163706|ref|YP_003356091.1| - 0.0002 20.9 0.0 0.00028 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282163706|ref|YP_003356091.1| - 0.00041 20.7 0.1 0.0016 18.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282163706|ref|YP_003356091.1| - 0.0075 16.2 0.0 0.015 15.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Pox_MCEL PF03291.11 gi|282163706|ref|YP_003356091.1| - 0.014 14.2 0.2 0.019 13.8 0.1 1.2 1 0 0 1 1 1 0 mRNA capping enzyme Methyltransf_4 PF02390.12 gi|282163706|ref|YP_003356091.1| - 0.12 11.3 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase GTP_EFTU PF00009.22 gi|282163707|ref|YP_003356092.1| - 1.8e-32 112.3 0.0 6.2e-32 110.5 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|282163707|ref|YP_003356092.1| - 3.4e-22 78.4 2.6 9e-22 77.0 1.8 1.8 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|282163707|ref|YP_003356092.1| - 1.1e-16 60.1 0.5 1.1e-16 60.1 0.4 3.4 3 1 1 4 4 4 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|282163707|ref|YP_003356092.1| - 6.3e-11 42.2 0.2 6.3e-11 42.2 0.1 3.0 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|282163707|ref|YP_003356092.1| - 1.5e-06 28.1 0.2 5.6e-06 26.2 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase Miro PF08477.8 gi|282163707|ref|YP_003356092.1| - 0.00019 21.8 0.0 0.00048 20.6 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|282163707|ref|YP_003356092.1| - 0.0074 15.8 0.0 0.021 14.3 0.0 1.7 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|282163707|ref|YP_003356092.1| - 0.023 14.5 0.1 0.22 11.3 0.0 2.4 1 1 1 2 2 2 0 Dynamin family PduV-EutP PF10662.4 gi|282163707|ref|YP_003356092.1| - 0.036 13.5 0.0 0.61 9.5 0.0 2.8 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation DLIC PF05783.6 gi|282163707|ref|YP_003356092.1| - 0.093 11.3 0.0 0.17 10.5 0.0 1.4 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) NDK PF00334.14 gi|282163707|ref|YP_003356092.1| - 0.1 12.3 0.2 18 5.1 0.0 2.7 2 0 0 2 2 2 0 Nucleoside diphosphate kinase AAA_16 PF13191.1 gi|282163707|ref|YP_003356092.1| - 0.11 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain NDK PF00334.14 gi|282163708|ref|YP_003356093.1| - 6.3e-59 197.6 0.0 7.2e-59 197.4 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.15 gi|282163709|ref|YP_003356094.1| - 1.6e-19 69.4 1.0 1.8e-19 69.3 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|282163709|ref|YP_003356094.1| - 9.1e-07 28.4 2.4 1.5e-06 27.7 1.7 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Zn_ribbon_recom PF13408.1 gi|282163709|ref|YP_003356094.1| - 0.038 14.2 3.3 0.046 13.9 2.3 1.3 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain ICAM_N PF03921.9 gi|282163709|ref|YP_003356094.1| - 0.054 12.9 0.0 0.069 12.6 0.0 1.2 1 0 0 1 1 1 0 Intercellular adhesion molecule (ICAM), N-terminal domain YHS PF04945.8 gi|282163709|ref|YP_003356094.1| - 0.066 13.0 0.2 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 YHS domain Ribosomal_S28e PF01200.13 gi|282163710|ref|YP_003356095.1| - 9.1e-29 99.0 1.0 9.7e-29 98.9 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|282163711|ref|YP_003356096.1| - 1.8e-26 91.4 0.7 2.1e-26 91.2 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family eRF1_3 PF03465.10 gi|282163711|ref|YP_003356096.1| - 0.018 15.2 0.1 0.02 15.1 0.0 1.2 1 0 0 1 1 1 0 eRF1 domain 3 PELOTA_1 PF15608.1 gi|282163711|ref|YP_003356096.1| - 0.089 12.5 0.1 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 PELOTA RNA binding domain DUF981 PF06168.6 gi|282163712|ref|YP_003356097.1| - 0.0089 15.8 0.4 0.01 15.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) DUF4131 PF13567.1 gi|282163712|ref|YP_003356097.1| - 0.0099 15.2 0.0 0.012 15.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) Grp1_Fun34_YaaH PF01184.14 gi|282163712|ref|YP_003356097.1| - 0.015 14.5 0.1 0.016 14.5 0.0 1.0 1 0 0 1 1 1 0 GPR1/FUN34/yaaH family Neurensin PF14927.1 gi|282163712|ref|YP_003356097.1| - 0.019 14.3 1.2 0.023 14.1 0.9 1.3 1 1 0 1 1 1 0 Neurensin NfeD PF01957.13 gi|282163712|ref|YP_003356097.1| - 0.039 14.1 0.1 0.045 13.8 0.1 1.2 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding UbiA PF01040.13 gi|282163712|ref|YP_003356097.1| - 0.044 13.0 0.9 0.049 12.8 0.6 1.0 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF4401 PF14351.1 gi|282163712|ref|YP_003356097.1| - 0.083 11.8 5.7 0.099 11.6 4.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) PIRT PF15099.1 gi|282163712|ref|YP_003356097.1| - 0.098 11.8 0.4 0.16 11.2 0.3 1.3 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family DUF872 PF05915.7 gi|282163712|ref|YP_003356097.1| - 0.13 12.1 1.6 0.15 11.8 1.1 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) SdpI PF13630.1 gi|282163712|ref|YP_003356097.1| - 0.22 11.2 3.5 0.32 10.7 2.4 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF3040 PF11239.3 gi|282163712|ref|YP_003356097.1| - 0.45 10.6 2.8 0.56 10.2 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Trypan_PARP PF05887.6 gi|282163714|ref|YP_003356099.1| - 1.1 9.0 16.5 2 8.2 11.4 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) NADHdh_A3 PF14987.1 gi|282163714|ref|YP_003356099.1| - 6.7 6.7 10.4 0.2 11.6 2.7 1.8 2 0 0 2 2 2 0 NADH dehydrogenase 1 alpha subcomplex subunit 3 DNA_pol_B PF00136.16 gi|282163715|ref|YP_003356100.1| - 2.9e-65 220.8 0.0 4.5e-65 220.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|282163715|ref|YP_003356100.1| - 8e-20 70.9 0.1 1.7e-19 69.8 0.1 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_2 PF03175.8 gi|282163715|ref|YP_003356100.1| - 0.0036 16.0 1.3 0.56 8.8 0.0 2.5 2 1 0 2 2 2 2 DNA polymerase type B, organellar and viral DNA_pol_B_exo2 PF10108.4 gi|282163715|ref|YP_003356100.1| - 0.0091 15.5 0.0 0.029 13.9 0.0 1.8 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|282163715|ref|YP_003356100.1| - 0.042 13.6 1.4 0.16 11.7 0.1 2.5 2 1 0 2 2 2 0 RNase_H superfamily DUF2207 PF09972.4 gi|282163716|ref|YP_003356101.1| - 0.028 13.0 0.0 0.029 12.9 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Gemini_mov PF01708.11 gi|282163717|ref|YP_003356102.1| - 0.015 14.8 0.4 0.032 13.7 0.3 1.5 1 0 0 1 1 1 0 Geminivirus putative movement protein Pam17 PF08566.5 gi|282163717|ref|YP_003356102.1| - 0.52 9.9 2.9 0.76 9.4 1.0 1.8 1 1 1 2 2 2 0 Mitochondrial import protein Pam17 DUF1761 PF08570.5 gi|282163717|ref|YP_003356102.1| - 0.79 9.7 7.5 0.96 9.4 5.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1761) DUF1003 PF06210.6 gi|282163717|ref|YP_003356102.1| - 0.91 9.4 2.7 0.55 10.1 0.7 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1003) RibD_C PF01872.12 gi|282163718|ref|YP_003356103.1| - 2.1e-55 187.4 0.3 2.3e-55 187.3 0.2 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Nol1_Nop2_Fmu PF01189.12 gi|282163719|ref|YP_003356104.1| - 8.9e-62 209.0 0.0 1e-61 208.8 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_26 PF13659.1 gi|282163719|ref|YP_003356104.1| - 2.1e-08 34.2 0.0 5.6e-08 32.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163719|ref|YP_003356104.1| - 1.2e-05 24.9 0.0 1.9e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|282163719|ref|YP_003356104.1| - 3.4e-05 23.9 0.0 5.3e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase POR PF01558.13 gi|282163719|ref|YP_003356104.1| - 0.0052 16.6 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Methyltransf_4 PF02390.12 gi|282163719|ref|YP_003356104.1| - 0.0076 15.3 0.0 0.066 12.2 0.0 2.3 3 0 0 3 3 3 1 Putative methyltransferase Met_10 PF02475.11 gi|282163719|ref|YP_003356104.1| - 0.013 15.1 0.0 0.022 14.3 0.0 1.4 1 1 0 1 1 1 0 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|282163719|ref|YP_003356104.1| - 0.017 15.6 0.1 0.033 14.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain UPF0113 PF03657.8 gi|282163720|ref|YP_003356105.1| - 6.6e-20 71.3 0.1 7.6e-20 71.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0113) PUA PF01472.15 gi|282163720|ref|YP_003356105.1| - 2.9e-05 23.7 0.0 4.8e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 PUA domain DUF3795 PF12675.2 gi|282163721|ref|YP_003356106.1| - 0.00083 19.4 30.5 0.016 15.3 18.9 2.7 2 1 0 2 2 2 1 Protein of unknown function (DUF3795) TRAM PF01938.15 gi|282163722|ref|YP_003356107.1| - 3.5e-16 58.7 3.3 4e-16 58.5 2.3 1.1 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.19 gi|282163722|ref|YP_003356107.1| - 0.14 11.7 0.4 0.33 10.5 0.1 1.8 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) Zn-ribbon_8 PF09723.5 gi|282163723|ref|YP_003356108.1| - 0.29 11.1 4.7 0.54 10.2 3.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-HIT PF04438.11 gi|282163723|ref|YP_003356108.1| - 1.3 8.6 7.2 0.24 11.0 2.2 1.9 2 0 0 2 2 2 0 HIT zinc finger BIR PF00653.16 gi|282163723|ref|YP_003356108.1| - 6.2 7.3 7.3 11 6.5 0.2 2.2 1 1 1 2 2 2 0 Inhibitor of Apoptosis domain NCD3G PF07562.9 gi|282163723|ref|YP_003356108.1| - 7.9 6.2 8.9 37 4.1 5.9 2.0 1 1 1 2 2 2 0 Nine Cysteines Domain of family 3 GPCR Fer4_5 PF12801.2 gi|282163724|ref|YP_003356109.1| - 4.4e-17 61.6 1.2 1.1e-10 41.1 0.0 4.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|282163724|ref|YP_003356109.1| - 5.3e-07 29.8 13.7 0.00067 19.8 9.6 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282163724|ref|YP_003356109.1| - 7.9e-07 28.4 18.3 0.00043 19.7 2.0 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|282163724|ref|YP_003356109.1| - 6.2e-06 26.1 24.5 0.0005 20.0 2.1 3.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282163724|ref|YP_003356109.1| - 8.4e-05 22.2 18.0 0.0018 18.0 2.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282163724|ref|YP_003356109.1| - 0.00021 21.0 14.1 0.00021 21.0 9.8 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282163724|ref|YP_003356109.1| - 0.0016 18.7 20.1 0.12 12.7 2.3 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282163724|ref|YP_003356109.1| - 0.0019 18.5 18.4 0.014 15.7 9.8 3.3 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|282163724|ref|YP_003356109.1| - 0.0075 16.7 25.3 0.043 14.3 1.6 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282163724|ref|YP_003356109.1| - 0.01 15.7 3.0 0.01 15.7 2.1 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|282163724|ref|YP_003356109.1| - 0.015 15.6 19.5 0.023 15.0 2.4 3.8 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282163724|ref|YP_003356109.1| - 0.035 14.4 3.5 0.035 14.4 2.4 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282163724|ref|YP_003356109.1| - 0.056 14.1 19.4 0.058 14.1 0.9 3.2 4 0 0 4 4 3 0 4Fe-4S double cluster binding domain Salp15 PF12115.3 gi|282163724|ref|YP_003356109.1| - 0.099 12.8 4.5 0.2 11.8 3.1 1.4 1 0 0 1 1 1 0 Salivary protein of 15kDa inhibits CD4+ T cell activation Fer4_21 PF14697.1 gi|282163724|ref|YP_003356109.1| - 0.23 11.3 18.5 0.54 10.1 0.9 3.1 3 1 0 3 3 3 0 4Fe-4S dicluster domain ABC2_membrane_5 PF13346.1 gi|282163724|ref|YP_003356109.1| - 4.9 6.3 12.6 0.5 9.6 1.2 2.2 2 0 0 2 2 2 0 ABC-2 family transporter protein Fer4_13 PF13370.1 gi|282163724|ref|YP_003356109.1| - 5.7 7.4 13.5 0.27 11.6 2.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain TrmB PF01978.14 gi|282163725|ref|YP_003356110.1| - 1.9e-20 72.2 0.2 4.3e-20 71.1 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|282163725|ref|YP_003356110.1| - 6.9e-10 38.2 0.2 1.1e-09 37.6 0.1 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_29 PF13551.1 gi|282163725|ref|YP_003356110.1| - 2.7e-05 24.2 0.1 0.00016 21.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|282163725|ref|YP_003356110.1| - 0.00011 22.0 0.4 0.00031 20.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain PLDc_2 PF13091.1 gi|282163725|ref|YP_003356110.1| - 0.00031 20.4 0.3 0.001 18.8 0.2 1.9 1 1 0 1 1 1 1 PLD-like domain HTH_IclR PF09339.5 gi|282163725|ref|YP_003356110.1| - 0.00035 20.1 0.0 0.0013 18.2 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|282163725|ref|YP_003356110.1| - 0.00076 19.3 0.1 0.0045 16.8 0.0 2.1 2 1 1 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.1 gi|282163725|ref|YP_003356110.1| - 0.0011 18.3 0.0 0.004 16.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|282163725|ref|YP_003356110.1| - 0.002 17.7 0.0 0.0044 16.6 0.0 1.5 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|282163725|ref|YP_003356110.1| - 0.01 15.2 0.0 0.022 14.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|282163725|ref|YP_003356110.1| - 0.011 15.4 0.0 0.026 14.2 0.0 1.6 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|282163725|ref|YP_003356110.1| - 0.011 15.7 0.0 0.043 13.9 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator Penicillinase_R PF03965.11 gi|282163725|ref|YP_003356110.1| - 0.018 15.1 0.0 0.037 14.1 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_5 PF01022.15 gi|282163725|ref|YP_003356110.1| - 0.018 14.7 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|282163725|ref|YP_003356110.1| - 0.025 14.2 0.0 0.063 12.9 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_7 PF02796.10 gi|282163725|ref|YP_003356110.1| - 0.039 13.8 0.2 7.3 6.5 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase TIR_2 PF13676.1 gi|282163725|ref|YP_003356110.1| - 0.043 13.9 0.0 0.083 13.0 0.0 1.4 1 0 0 1 1 1 0 TIR domain PadR PF03551.9 gi|282163725|ref|YP_003356110.1| - 0.045 13.5 0.0 0.096 12.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|282163725|ref|YP_003356110.1| - 0.062 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|282163725|ref|YP_003356110.1| - 0.081 13.2 0.0 0.24 11.7 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|282163725|ref|YP_003356110.1| - 0.086 12.6 0.0 0.4 10.5 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HMA PF00403.21 gi|282163726|ref|YP_003356111.1| - 8.5e-13 48.2 0.1 1e-12 47.9 0.1 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain E1-E2_ATPase PF00122.15 gi|282163727|ref|YP_003356112.1| - 2.7e-51 173.8 0.4 2.7e-51 173.8 0.3 2.1 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|282163727|ref|YP_003356112.1| - 2.3e-43 149.1 3.1 3.8e-43 148.4 2.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|282163727|ref|YP_003356112.1| - 1.2e-18 67.9 0.0 2.2e-18 67.1 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|282163727|ref|YP_003356112.1| - 0.025 14.1 5.8 0.091 12.3 2.4 2.3 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase DUF2148 PF09918.4 gi|282163727|ref|YP_003356112.1| - 0.042 13.5 2.4 0.13 12.0 1.7 1.8 1 0 0 1 1 1 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) DUF2635 PF10948.3 gi|282163727|ref|YP_003356112.1| - 0.059 12.6 1.6 1 8.6 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2635) SUR7 PF06687.7 gi|282163727|ref|YP_003356112.1| - 6.8 6.1 10.4 0.2 11.2 0.2 2.8 3 0 0 3 3 3 0 SUR7/PalI family Hydrolase PF00702.21 gi|282163728|ref|YP_003356113.1| - 5.9e-19 69.3 0.2 2.6e-18 67.2 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|282163728|ref|YP_003356113.1| - 5.8e-09 36.3 0.0 1e-08 35.5 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|282163728|ref|YP_003356113.1| - 0.009 15.8 0.0 0.066 13.1 0.0 2.4 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|282163728|ref|YP_003356113.1| - 0.011 15.9 0.0 0.057 13.6 0.0 2.2 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|282163728|ref|YP_003356113.1| - 0.069 12.7 0.0 2.5 7.5 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase ABC_tran PF00005.22 gi|282163729|ref|YP_003356114.1| - 1.8e-52 177.2 0.0 8.6e-27 94.1 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|282163729|ref|YP_003356114.1| - 1.7e-12 47.9 0.1 0.0018 18.2 0.0 4.2 3 1 0 4 4 4 3 AAA domain DUF258 PF03193.11 gi|282163729|ref|YP_003356114.1| - 7.6e-08 31.7 0.2 0.001 18.2 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|282163729|ref|YP_003356114.1| - 3e-07 30.6 0.0 0.028 14.4 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|282163729|ref|YP_003356114.1| - 2.2e-05 25.2 0.7 0.012 16.3 0.0 3.0 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|282163729|ref|YP_003356114.1| - 4.6e-05 22.7 7.6 0.018 14.2 0.1 3.9 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|282163729|ref|YP_003356114.1| - 7.3e-05 21.9 1.6 0.21 10.5 0.0 3.9 4 0 0 4 4 4 1 AAA ATPase domain AAA_30 PF13604.1 gi|282163729|ref|YP_003356114.1| - 0.00027 20.5 0.3 1.9 8.0 0.0 3.3 3 0 0 3 3 3 2 AAA domain SbcCD_C PF13558.1 gi|282163729|ref|YP_003356114.1| - 0.00028 20.7 0.0 0.98 9.3 0.0 2.9 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|282163729|ref|YP_003356114.1| - 0.00057 20.0 0.4 0.8 9.8 0.0 3.1 2 2 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|282163729|ref|YP_003356114.1| - 0.0006 19.3 0.0 0.72 9.3 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|282163729|ref|YP_003356114.1| - 0.00065 18.6 1.1 0.4 9.4 0.1 2.7 3 0 0 3 3 2 2 NB-ARC domain MMR_HSR1 PF01926.18 gi|282163729|ref|YP_003356114.1| - 0.00066 19.6 1.0 0.48 10.3 0.3 3.0 3 1 0 3 3 2 1 50S ribosome-binding GTPase UPF0079 PF02367.12 gi|282163729|ref|YP_003356114.1| - 0.00071 19.1 0.8 0.48 10.0 0.1 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|282163729|ref|YP_003356114.1| - 0.0015 18.0 0.7 2.4 7.7 0.0 2.7 3 0 0 3 3 2 2 P-loop containing region of AAA domain NACHT PF05729.7 gi|282163729|ref|YP_003356114.1| - 0.0015 18.1 0.2 0.99 9.0 0.0 3.1 3 0 0 3 3 3 1 NACHT domain AAA_23 PF13476.1 gi|282163729|ref|YP_003356114.1| - 0.0016 18.8 2.7 0.19 12.0 0.2 2.5 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|282163729|ref|YP_003356114.1| - 0.0016 17.8 0.8 0.52 9.7 0.0 3.4 3 1 0 3 3 3 1 IstB-like ATP binding protein PduV-EutP PF10662.4 gi|282163729|ref|YP_003356114.1| - 0.002 17.6 0.0 2.1 7.8 0.0 2.9 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation PhoH PF02562.11 gi|282163729|ref|YP_003356114.1| - 0.0034 16.6 0.2 6.1 6.0 0.1 3.7 3 1 0 3 3 3 0 PhoH-like protein Zeta_toxin PF06414.7 gi|282163729|ref|YP_003356114.1| - 0.0036 16.4 0.0 0.065 12.3 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin PIF1 PF05970.9 gi|282163729|ref|YP_003356114.1| - 0.0037 16.2 0.2 2 7.3 0.0 2.6 2 0 0 2 2 2 1 PIF1-like helicase AAA_18 PF13238.1 gi|282163729|ref|YP_003356114.1| - 0.0079 16.5 0.1 1.4 9.2 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|282163729|ref|YP_003356114.1| - 0.0082 15.6 4.7 0.56 9.5 0.1 3.4 2 2 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|282163729|ref|YP_003356114.1| - 0.0087 15.4 1.4 5.4 6.3 0.1 3.8 3 1 0 3 3 3 0 AAA domain PRK PF00485.13 gi|282163729|ref|YP_003356114.1| - 0.017 14.6 0.1 1.8 8.0 0.0 2.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_19 PF13245.1 gi|282163729|ref|YP_003356114.1| - 0.018 14.7 0.8 9 6.1 0.1 3.1 2 0 0 2 2 2 0 Part of AAA domain KAP_NTPase PF07693.9 gi|282163729|ref|YP_003356114.1| - 0.02 13.9 0.0 1.4 7.8 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain KaiC PF06745.8 gi|282163729|ref|YP_003356114.1| - 0.03 13.4 0.6 4.6 6.2 0.0 2.7 2 0 0 2 2 2 0 KaiC Miro PF08477.8 gi|282163729|ref|YP_003356114.1| - 0.034 14.6 0.1 9.5 6.7 0.0 2.7 2 0 0 2 2 2 0 Miro-like protein APS_kinase PF01583.15 gi|282163729|ref|YP_003356114.1| - 0.052 13.2 0.2 0.49 10.0 0.0 2.5 3 0 0 3 3 3 0 Adenylylsulphate kinase Sigma54_activat PF00158.21 gi|282163729|ref|YP_003356114.1| - 0.054 12.9 0.4 14 5.1 0.0 3.1 3 0 0 3 3 3 0 Sigma-54 interaction domain MobB PF03205.9 gi|282163729|ref|YP_003356114.1| - 0.066 12.9 0.5 3.7 7.2 0.1 3.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NOB1_Zn_bind PF08772.6 gi|282163729|ref|YP_003356114.1| - 0.081 12.7 0.1 0.2 11.4 0.1 1.7 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like cobW PF02492.14 gi|282163729|ref|YP_003356114.1| - 0.18 11.2 5.3 5.6 6.3 0.1 3.7 4 1 0 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain DUF87 PF01935.12 gi|282163729|ref|YP_003356114.1| - 0.22 11.2 4.3 5 6.8 0.1 3.3 3 0 0 3 3 3 0 Domain of unknown function DUF87 AAA_33 PF13671.1 gi|282163729|ref|YP_003356114.1| - 0.24 11.2 0.9 2.9 7.7 0.1 2.9 3 1 0 3 3 2 0 AAA domain AAA PF00004.24 gi|282163729|ref|YP_003356114.1| - 0.78 9.9 4.3 6.7 6.9 0.0 3.8 4 1 0 4 4 3 0 ATPase family associated with various cellular activities (AAA) Pro_isomerase PF00160.16 gi|282163730|ref|YP_003356115.1| - 4.6e-06 26.9 0.7 0.98 9.6 0.0 4.4 3 2 0 3 3 3 3 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Fer2_4 PF13510.1 gi|282163730|ref|YP_003356115.1| - 4.1e-05 23.2 0.0 0.00088 19.0 0.0 2.3 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain DUF871 PF05913.6 gi|282163730|ref|YP_003356115.1| - 0.045 12.5 0.0 0.061 12.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF871) DUF2102 PF09875.4 gi|282163731|ref|YP_003356116.1| - 4.4e-43 145.0 0.0 5.9e-43 144.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) DUF2112 PF09885.4 gi|282163732|ref|YP_003356117.1| - 1e-68 229.4 0.1 1.2e-68 229.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) BcrAD_BadFG PF01869.15 gi|282163733|ref|YP_003356118.1| - 4.9e-58 196.5 4.8 7.1e-58 196.0 3.4 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_C PF02782.11 gi|282163733|ref|YP_003356118.1| - 6.9e-05 22.5 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain CmcH_NodU PF02543.10 gi|282163733|ref|YP_003356118.1| - 0.013 14.6 0.2 0.03 13.4 0.0 1.6 2 0 0 2 2 2 0 Carbamoyltransferase FtsA PF14450.1 gi|282163733|ref|YP_003356118.1| - 0.081 12.7 5.8 1.7 8.5 0.1 3.2 3 0 0 3 3 3 0 Cell division protein FtsA DUF2113 PF09886.4 gi|282163734|ref|YP_003356119.1| - 1.9e-60 203.2 0.0 2.1e-60 203.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) DUF413 PF04219.7 gi|282163734|ref|YP_003356119.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF MCR_C PF04609.7 gi|282163735|ref|YP_003356120.1| - 2.3e-105 351.2 0.3 2.6e-105 351.0 0.2 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF4231 PF14015.1 gi|282163736|ref|YP_003356121.1| - 0.35 10.8 1.2 1 9.4 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) SdpI PF13630.1 gi|282163737|ref|YP_003356122.1| - 0.36 10.5 15.6 5 6.9 1.8 3.1 3 0 0 3 3 3 0 SdpI/YhfL protein family DUF1206 PF06724.6 gi|282163737|ref|YP_003356122.1| - 0.86 9.4 0.0 0.86 9.4 0.0 3.6 3 1 0 3 3 3 0 Domain of Unknown Function (DUF1206) Tetraspannin PF00335.15 gi|282163737|ref|YP_003356122.1| - 2.3 7.4 11.6 1.5e+02 1.5 8.4 2.1 1 1 0 1 1 1 0 Tetraspanin family DsbD PF02683.10 gi|282163738|ref|YP_003356123.1| - 2.3e-13 50.2 20.7 3.8e-13 49.5 14.3 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.1 gi|282163738|ref|YP_003356123.1| - 0.0001 22.0 0.0 0.00025 20.7 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain CBM_2 PF00553.14 gi|282163738|ref|YP_003356123.1| - 0.011 15.8 0.2 0.02 14.9 0.2 1.4 1 0 0 1 1 1 0 Cellulose binding domain CMD PF02627.15 gi|282163739|ref|YP_003356124.1| - 9.3e-17 60.6 0.1 1.6e-16 59.8 0.1 1.4 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Orthopox_F7 PF05813.7 gi|282163739|ref|YP_003356124.1| - 0.026 14.4 0.6 0.046 13.6 0.4 1.5 1 0 0 1 1 1 0 Orthopoxvirus F7 protein CbiX PF01903.12 gi|282163740|ref|YP_003356125.1| - 3.3e-23 81.8 0.0 6.3e-13 48.7 0.0 2.4 2 0 0 2 2 2 2 CbiX Ferrochelatase PF00762.14 gi|282163740|ref|YP_003356125.1| - 2.4e-05 23.4 0.0 0.0036 16.3 0.0 2.3 1 1 1 2 2 2 2 Ferrochelatase NAD_binding_10 PF13460.1 gi|282163740|ref|YP_003356125.1| - 0.028 14.4 0.0 1.5 8.7 0.0 2.4 2 1 0 2 2 2 0 NADH(P)-binding NikR_C PF08753.6 gi|282163742|ref|YP_003356127.1| - 2e-30 104.5 1.8 2.6e-30 104.1 1.2 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|282163742|ref|YP_003356127.1| - 7.8e-09 35.0 0.0 1.6e-08 34.0 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family CbiA PF01656.18 gi|282163743|ref|YP_003356128.1| - 4.2e-20 71.9 0.0 5.2e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|282163743|ref|YP_003356128.1| - 7.3e-09 35.7 0.0 7e-08 32.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|282163743|ref|YP_003356128.1| - 1.6e-06 27.3 0.4 4.4e-06 25.9 0.1 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|282163743|ref|YP_003356128.1| - 2.1e-06 28.5 0.1 3.8e-06 27.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|282163743|ref|YP_003356128.1| - 5.5e-06 25.6 0.1 1.1e-05 24.6 0.0 1.5 2 0 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.13 gi|282163743|ref|YP_003356128.1| - 5.7e-06 25.7 0.1 1.2e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_10 PF12846.2 gi|282163743|ref|YP_003356128.1| - 5.9e-06 25.9 0.1 1.7e-05 24.4 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain MobB PF03205.9 gi|282163743|ref|YP_003356128.1| - 3.5e-05 23.5 0.1 0.001 18.7 0.0 2.4 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|282163743|ref|YP_003356128.1| - 3.7e-05 23.2 0.1 0.00026 20.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|282163743|ref|YP_003356128.1| - 4e-05 23.1 0.1 0.00046 19.6 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain APS_kinase PF01583.15 gi|282163743|ref|YP_003356128.1| - 0.00012 21.8 0.0 0.00019 21.1 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase DUF87 PF01935.12 gi|282163743|ref|YP_003356128.1| - 0.00036 20.4 0.0 0.00062 19.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 ATP_bind_1 PF03029.12 gi|282163743|ref|YP_003356128.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein KTI12 PF08433.5 gi|282163743|ref|YP_003356128.1| - 0.0016 17.7 0.0 0.0029 16.8 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|282163743|ref|YP_003356128.1| - 0.0016 18.7 0.1 0.0052 17.0 0.0 1.9 2 1 1 3 3 2 1 AAA domain Zeta_toxin PF06414.7 gi|282163743|ref|YP_003356128.1| - 0.0033 16.5 0.0 0.006 15.7 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin ArgK PF03308.11 gi|282163743|ref|YP_003356128.1| - 0.0087 14.8 0.1 0.016 13.9 0.0 1.4 1 0 0 1 1 1 1 ArgK protein YhjQ PF06564.7 gi|282163743|ref|YP_003356128.1| - 0.01 15.2 0.0 0.021 14.1 0.0 1.5 1 0 0 1 1 1 0 YhjQ protein KaiC PF06745.8 gi|282163743|ref|YP_003356128.1| - 0.014 14.5 0.0 0.022 13.9 0.0 1.4 1 0 0 1 1 1 0 KaiC TrwB_AAD_bind PF10412.4 gi|282163743|ref|YP_003356128.1| - 0.015 13.9 0.0 0.022 13.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TrkA_N PF02254.13 gi|282163743|ref|YP_003356128.1| - 0.019 14.9 0.0 0.37 10.8 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain ABC_tran PF00005.22 gi|282163743|ref|YP_003356128.1| - 0.023 15.0 0.1 0.051 13.8 0.0 1.7 2 0 0 2 2 1 0 ABC transporter FtsK_SpoIIIE PF01580.13 gi|282163743|ref|YP_003356128.1| - 0.056 12.9 0.1 0.12 11.8 0.1 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Thymidylate_kin PF02223.12 gi|282163743|ref|YP_003356128.1| - 0.083 12.2 0.1 0.26 10.6 0.0 1.8 2 0 0 2 2 2 0 Thymidylate kinase AAA_30 PF13604.1 gi|282163743|ref|YP_003356128.1| - 0.083 12.4 0.1 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain UDPG_MGDP_dh_N PF03721.9 gi|282163743|ref|YP_003356128.1| - 0.1 11.9 0.1 0.29 10.4 0.0 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AAA_16 PF13191.1 gi|282163743|ref|YP_003356128.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|282163743|ref|YP_003356128.1| - 0.12 12.8 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_33 PF13671.1 gi|282163743|ref|YP_003356128.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain NikR_C PF08753.6 gi|282163744|ref|YP_003356129.1| - 7.1e-24 83.5 0.3 1e-23 82.9 0.2 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|282163744|ref|YP_003356129.1| - 2e-05 24.3 0.0 3.5e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ABC_tran PF00005.22 gi|282163745|ref|YP_003356130.1| - 1.7e-30 106.1 0.0 2.4e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163745|ref|YP_003356130.1| - 1.5e-11 44.8 0.1 0.00013 22.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282163745|ref|YP_003356130.1| - 9.4e-07 28.2 0.0 0.0035 16.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|282163745|ref|YP_003356130.1| - 1.5e-06 27.6 0.1 0.0031 16.7 0.0 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|282163745|ref|YP_003356130.1| - 0.00011 22.3 0.0 0.00037 20.6 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.4 gi|282163745|ref|YP_003356130.1| - 0.00033 19.3 0.6 0.19 10.2 0.0 2.8 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|282163745|ref|YP_003356130.1| - 0.00063 19.8 0.0 0.0051 16.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|282163745|ref|YP_003356130.1| - 0.00093 18.9 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_25 PF13481.1 gi|282163745|ref|YP_003356130.1| - 0.0016 17.8 0.0 0.13 11.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|282163745|ref|YP_003356130.1| - 0.0018 18.2 0.0 0.0035 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|282163745|ref|YP_003356130.1| - 0.0022 18.3 0.1 0.0035 17.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|282163745|ref|YP_003356130.1| - 0.0025 17.6 0.0 0.0092 15.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|282163745|ref|YP_003356130.1| - 0.0047 16.5 0.1 0.0089 15.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|282163745|ref|YP_003356130.1| - 0.0055 16.2 0.1 0.0056 16.2 0.1 1.3 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_17 PF13207.1 gi|282163745|ref|YP_003356130.1| - 0.0063 17.3 0.0 0.014 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|282163745|ref|YP_003356130.1| - 0.0099 15.3 0.1 0.026 14.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|282163745|ref|YP_003356130.1| - 0.011 15.4 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.10 gi|282163745|ref|YP_003356130.1| - 0.019 13.6 0.0 0.026 13.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|282163745|ref|YP_003356130.1| - 0.02 14.1 0.0 0.03 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|282163745|ref|YP_003356130.1| - 0.021 15.1 0.0 0.079 13.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|282163745|ref|YP_003356130.1| - 0.023 14.4 0.0 0.069 12.9 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_33 PF13671.1 gi|282163745|ref|YP_003356130.1| - 0.023 14.5 0.0 0.032 14.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|282163745|ref|YP_003356130.1| - 0.038 13.9 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|282163745|ref|YP_003356130.1| - 0.043 13.3 0.1 0.15 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|282163745|ref|YP_003356130.1| - 0.05 13.5 0.2 0.73 9.7 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|282163745|ref|YP_003356130.1| - 0.067 12.0 0.1 0.14 10.9 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.9 gi|282163745|ref|YP_003356130.1| - 0.072 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.15 gi|282163745|ref|YP_003356130.1| - 0.085 12.5 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_10 PF12846.2 gi|282163745|ref|YP_003356130.1| - 0.097 12.0 0.1 0.38 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain RNA_helicase PF00910.17 gi|282163745|ref|YP_003356130.1| - 0.12 12.6 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|282163745|ref|YP_003356130.1| - 0.12 12.0 0.0 0.87 9.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) FecCD PF01032.13 gi|282163746|ref|YP_003356131.1| - 2.1e-89 299.4 31.3 2.6e-89 299.1 21.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|282163746|ref|YP_003356131.1| - 0.00027 20.3 17.7 0.00047 19.5 12.3 1.4 1 0 0 1 1 1 1 ABC 3 transport family Coa1 PF08695.5 gi|282163746|ref|YP_003356131.1| - 0.011 15.2 0.2 0.024 14.1 0.1 1.5 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 Peripla_BP_2 PF01497.13 gi|282163747|ref|YP_003356132.1| - 5.6e-33 114.0 1.4 7.2e-33 113.6 0.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TroA PF01297.12 gi|282163748|ref|YP_003356133.1| - 3.4e-11 42.8 1.1 9.5e-11 41.4 0.7 1.7 1 1 0 1 1 1 1 Periplasmic solute binding protein family ABC-3 PF00950.12 gi|282163749|ref|YP_003356134.1| - 2.1e-47 161.5 44.9 2.5e-47 161.3 31.1 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|282163749|ref|YP_003356134.1| - 0.0012 17.6 42.4 0.0047 15.7 29.4 1.8 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|282163750|ref|YP_003356135.1| - 5.8e-26 91.4 0.0 7.4e-26 91.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163750|ref|YP_003356135.1| - 2e-11 44.3 0.0 6.6e-09 36.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|282163750|ref|YP_003356135.1| - 9.7e-06 26.0 0.1 1.5e-05 25.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|282163750|ref|YP_003356135.1| - 5.5e-05 22.5 0.1 0.037 13.2 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|282163750|ref|YP_003356135.1| - 6.1e-05 22.8 0.3 0.0031 17.3 0.2 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|282163750|ref|YP_003356135.1| - 0.00029 20.0 0.0 0.15 11.1 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain NB-ARC PF00931.17 gi|282163750|ref|YP_003356135.1| - 0.0016 17.3 0.1 0.0025 16.7 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_10 PF12846.2 gi|282163750|ref|YP_003356135.1| - 0.002 17.6 0.2 0.11 11.9 0.1 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|282163750|ref|YP_003356135.1| - 0.0041 16.6 0.2 0.0087 15.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|282163750|ref|YP_003356135.1| - 0.0043 16.1 0.0 0.0067 15.5 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.10 gi|282163750|ref|YP_003356135.1| - 0.0061 16.2 0.2 0.32 10.6 0.1 2.2 2 0 0 2 2 2 1 NTPase AAA_30 PF13604.1 gi|282163750|ref|YP_003356135.1| - 0.0085 15.6 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|282163750|ref|YP_003356135.1| - 0.014 15.4 0.3 0.073 13.0 0.1 1.9 2 0 0 2 2 2 0 AAA ATPase domain cobW PF02492.14 gi|282163750|ref|YP_003356135.1| - 0.026 13.9 0.1 0.041 13.3 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MutS_V PF00488.16 gi|282163750|ref|YP_003356135.1| - 0.036 13.4 0.0 0.058 12.7 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_25 PF13481.1 gi|282163750|ref|YP_003356135.1| - 0.039 13.3 0.0 0.1 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|282163750|ref|YP_003356135.1| - 0.039 13.6 0.1 0.071 12.8 0.1 1.4 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|282163750|ref|YP_003356135.1| - 0.04 13.5 0.1 0.071 12.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.1 gi|282163750|ref|YP_003356135.1| - 0.052 13.8 0.0 0.63 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|282163750|ref|YP_003356135.1| - 0.057 13.3 0.1 0.13 12.2 0.1 1.5 2 0 0 2 2 1 0 AAA domain Arch_ATPase PF01637.13 gi|282163750|ref|YP_003356135.1| - 0.062 12.9 0.1 0.3 10.7 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase ATP-synt_ab PF00006.20 gi|282163750|ref|YP_003356135.1| - 0.063 12.7 0.0 0.072 12.5 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF258 PF03193.11 gi|282163750|ref|YP_003356135.1| - 0.07 12.3 0.1 0.097 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|282163750|ref|YP_003356135.1| - 0.088 12.6 0.0 0.26 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|282163750|ref|YP_003356135.1| - 0.13 11.8 0.1 0.25 10.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_ATPase PF09818.4 gi|282163750|ref|YP_003356135.1| - 0.14 10.7 0.1 1.8 7.0 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MobB PF03205.9 gi|282163750|ref|YP_003356135.1| - 0.15 11.7 0.3 0.36 10.5 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|282163750|ref|YP_003356135.1| - 0.16 11.5 0.1 1.3 8.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|282163750|ref|YP_003356135.1| - 0.17 11.2 0.1 0.38 10.1 0.0 1.5 2 0 0 2 2 2 0 IstB-like ATP binding protein FmdE PF02663.9 gi|282163751|ref|YP_003356136.1| - 1.3e-19 70.3 0.0 1.7e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Nuc_deoxyrib_tr PF05014.10 gi|282163752|ref|YP_003356137.1| - 1.9e-20 72.7 0.0 2.3e-20 72.5 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase ABC_tran PF00005.22 gi|282163753|ref|YP_003356138.1| - 3.5e-32 111.5 0.0 9.1e-32 110.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|282163753|ref|YP_003356138.1| - 2e-16 60.8 0.6 6.3e-09 36.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282163753|ref|YP_003356138.1| - 2e-09 37.0 0.0 4.1e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|282163753|ref|YP_003356138.1| - 1.2e-07 31.1 0.0 4.9e-07 29.2 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|282163753|ref|YP_003356138.1| - 1.7e-06 27.4 0.0 3.3e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|282163753|ref|YP_003356138.1| - 0.00022 20.7 0.0 0.00044 19.8 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|282163753|ref|YP_003356138.1| - 0.00032 20.7 0.3 0.0017 18.4 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|282163753|ref|YP_003356138.1| - 0.0015 18.9 0.0 0.002 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|282163753|ref|YP_003356138.1| - 0.0017 18.2 0.0 0.0035 17.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_28 PF13521.1 gi|282163753|ref|YP_003356138.1| - 0.0026 17.7 0.0 0.0058 16.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF3584 PF12128.3 gi|282163753|ref|YP_003356138.1| - 0.0044 14.4 0.0 0.0066 13.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) SbcCD_C PF13558.1 gi|282163753|ref|YP_003356138.1| - 0.016 15.1 0.0 0.12 12.3 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|282163753|ref|YP_003356138.1| - 0.028 13.8 0.0 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|282163753|ref|YP_003356138.1| - 0.039 14.7 0.2 0.17 12.7 0.0 2.1 2 2 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|282163753|ref|YP_003356138.1| - 0.053 12.9 0.1 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|282163753|ref|YP_003356138.1| - 0.06 13.8 0.1 0.16 12.4 0.0 1.8 2 1 0 2 2 2 0 Miro-like protein AAA_18 PF13238.1 gi|282163753|ref|YP_003356138.1| - 0.06 13.6 0.4 0.24 11.7 0.0 2.2 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|282163753|ref|YP_003356138.1| - 0.078 13.1 0.0 0.23 11.6 0.0 1.8 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.7 gi|282163753|ref|YP_003356138.1| - 0.1 12.2 0.0 0.36 10.4 0.0 1.8 2 0 0 2 2 2 0 NACHT domain Arch_ATPase PF01637.13 gi|282163753|ref|YP_003356138.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase CbiQ PF02361.11 gi|282163754|ref|YP_003356139.1| - 1.1e-32 113.4 9.7 1.6e-32 112.9 6.7 1.1 1 0 0 1 1 1 1 Cobalt transport protein CbiM PF01891.11 gi|282163755|ref|YP_003356140.1| - 3.6e-64 216.1 12.1 4.1e-64 215.9 8.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|282163755|ref|YP_003356140.1| - 0.002 18.0 24.1 0.002 18.0 16.7 2.1 2 1 0 2 2 2 1 Protein of unknown function (DUF3816) 7TM-7TMR_HD PF07698.6 gi|282163755|ref|YP_003356140.1| - 0.011 15.2 13.6 0.1 11.9 4.4 3.0 2 1 1 3 3 3 0 7TM receptor with intracellular HD hydrolase DUF3397 PF11877.3 gi|282163755|ref|YP_003356140.1| - 0.38 10.7 5.0 3.1 7.8 0.8 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3397) DUF1129 PF06570.6 gi|282163755|ref|YP_003356140.1| - 3.3 6.9 6.4 4.2 6.6 1.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) PDGLE PF13190.1 gi|282163756|ref|YP_003356141.1| - 3e-14 52.4 3.3 3.7e-14 52.1 2.3 1.1 1 0 0 1 1 1 1 PDGLE domain MttA_Hcf106 PF02416.11 gi|282163756|ref|YP_003356141.1| - 0.11 11.6 0.6 0.25 10.4 0.4 1.6 1 0 0 1 1 1 0 mttA/Hcf106 family PDGLE PF13190.1 gi|282163757|ref|YP_003356142.1| - 2.1e-14 52.9 1.8 2.7e-14 52.5 1.2 1.1 1 0 0 1 1 1 1 PDGLE domain Yip1 PF04893.12 gi|282163757|ref|YP_003356142.1| - 0.0052 16.3 0.8 0.0063 16.0 0.5 1.1 1 0 0 1 1 1 1 Yip1 domain LEA_5 PF00477.12 gi|282163758|ref|YP_003356143.1| - 9.8e-07 29.0 16.0 0.0032 17.7 3.5 2.0 1 1 1 2 2 2 2 Small hydrophilic plant seed protein KGG PF10685.4 gi|282163758|ref|YP_003356143.1| - 1.6e-05 24.7 18.5 0.01 15.7 0.0 4.2 4 0 0 4 4 4 3 Stress-induced bacterial acidophilic repeat motif YjzC PF14168.1 gi|282163758|ref|YP_003356143.1| - 1.1 9.1 4.8 13 5.8 0.4 2.4 1 1 1 2 2 2 0 YjzC-like protein SASP PF00269.15 gi|282163758|ref|YP_003356143.1| - 6.1 6.7 12.0 5 7.0 0.2 2.9 2 1 1 3 3 3 0 Small, acid-soluble spore proteins, alpha/beta type Mfp-3 PF04202.8 gi|282163758|ref|YP_003356143.1| - 6.3 7.0 8.9 3.4 7.8 2.0 2.1 1 1 1 2 2 2 0 Foot protein 3 KRTAP PF11759.3 gi|282163759|ref|YP_003356144.1| - 0.36 11.1 5.8 0.42 10.8 4.0 1.2 1 0 0 1 1 1 0 Keratin-associated matrix YbgT_YccB PF08173.6 gi|282163759|ref|YP_003356144.1| - 7.1 6.5 10.1 3.3 7.6 1.8 2.5 2 1 0 2 2 2 0 Membrane bound YbgT-like protein Na_H_Exchanger PF00999.16 gi|282163760|ref|YP_003356145.1| - 5.9e-51 173.1 48.4 7.6e-51 172.8 33.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family AP_endonuc_2 PF01261.19 gi|282163761|ref|YP_003356146.1| - 5.2e-13 48.7 0.0 6.7e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|282163761|ref|YP_003356146.1| - 0.006 15.6 0.0 0.011 14.8 0.0 1.4 1 1 0 1 1 1 1 UV-endonuclease UvdE KGG PF10685.4 gi|282163762|ref|YP_003356147.1| - 5e-06 26.3 7.7 0.0039 17.0 0.0 2.7 2 1 0 2 2 2 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282163762|ref|YP_003356147.1| - 0.0012 19.1 6.5 0.0022 18.2 4.5 1.6 1 1 0 1 1 1 1 Small hydrophilic plant seed protein Phasin PF05597.6 gi|282163762|ref|YP_003356147.1| - 0.0041 16.8 0.9 0.0049 16.6 0.3 1.4 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) SASP PF00269.15 gi|282163762|ref|YP_003356147.1| - 0.21 11.4 6.2 31 4.5 4.3 2.2 1 1 0 1 1 1 0 Small, acid-soluble spore proteins, alpha/beta type KGG PF10685.4 gi|282163763|ref|YP_003356148.1| - 6.5e-05 22.7 13.2 0.0046 16.8 0.0 3.3 2 1 1 3 3 3 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282163763|ref|YP_003356148.1| - 0.027 14.7 10.2 0.043 14.0 7.0 1.4 1 1 0 1 1 1 0 Small hydrophilic plant seed protein SASP PF00269.15 gi|282163763|ref|YP_003356148.1| - 0.75 9.6 8.8 2.1e+02 1.8 6.1 2.4 1 1 0 1 1 1 0 Small, acid-soluble spore proteins, alpha/beta type ABC_tran PF00005.22 gi|282163764|ref|YP_003356149.1| - 3.5e-31 108.3 0.0 7.2e-31 107.3 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|282163764|ref|YP_003356149.1| - 1.7e-11 44.6 0.4 2.1e-05 24.6 0.2 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|282163764|ref|YP_003356149.1| - 2e-06 27.1 0.3 0.00013 21.3 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|282163764|ref|YP_003356149.1| - 5.1e-05 22.7 0.1 0.00011 21.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|282163764|ref|YP_003356149.1| - 0.00011 22.2 1.5 0.001 19.0 1.1 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|282163764|ref|YP_003356149.1| - 0.0028 18.4 0.3 0.0081 16.9 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|282163764|ref|YP_003356149.1| - 0.0029 16.7 0.8 1.5 7.7 0.2 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.1 gi|282163764|ref|YP_003356149.1| - 0.0038 16.8 0.6 0.016 14.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|282163764|ref|YP_003356149.1| - 0.006 16.8 0.1 0.038 14.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|282163764|ref|YP_003356149.1| - 0.007 15.1 0.4 0.015 14.1 0.0 1.6 2 0 0 2 2 2 1 ArgK protein AAA_22 PF13401.1 gi|282163764|ref|YP_003356149.1| - 0.0072 16.4 1.8 0.84 9.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|282163764|ref|YP_003356149.1| - 0.0076 16.5 0.2 0.021 15.1 0.3 1.5 2 0 0 2 2 1 1 AAA domain AAA_13 PF13166.1 gi|282163764|ref|YP_003356149.1| - 0.0086 14.5 0.1 2.7 6.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|282163764|ref|YP_003356149.1| - 0.011 15.4 0.0 0.024 14.3 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase PIF1 PF05970.9 gi|282163764|ref|YP_003356149.1| - 0.016 14.1 0.1 0.049 12.5 0.0 1.7 2 0 0 2 2 2 0 PIF1-like helicase Rad17 PF03215.10 gi|282163764|ref|YP_003356149.1| - 0.018 13.7 0.3 0.027 13.1 0.2 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ATP_bind_1 PF03029.12 gi|282163764|ref|YP_003356149.1| - 0.018 14.5 0.5 0.063 12.8 0.1 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|282163764|ref|YP_003356149.1| - 0.018 14.4 1.4 0.65 9.3 0.5 2.4 2 1 0 3 3 3 0 AAA-like domain ATP-synt_ab PF00006.20 gi|282163764|ref|YP_003356149.1| - 0.019 14.4 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain KAP_NTPase PF07693.9 gi|282163764|ref|YP_003356149.1| - 0.02 13.8 0.3 0.078 11.9 0.0 1.7 1 1 0 2 2 2 0 KAP family P-loop domain AAA_5 PF07728.9 gi|282163764|ref|YP_003356149.1| - 0.026 14.2 0.0 0.074 12.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|282163764|ref|YP_003356149.1| - 0.028 13.3 0.0 0.05 12.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.9 gi|282163764|ref|YP_003356149.1| - 0.042 13.5 0.1 0.094 12.4 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|282163764|ref|YP_003356149.1| - 0.051 12.7 0.1 0.11 11.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|282163764|ref|YP_003356149.1| - 0.06 12.7 0.0 0.15 11.5 0.0 1.6 2 0 0 2 2 1 0 SRP54-type protein, GTPase domain PRK PF00485.13 gi|282163764|ref|YP_003356149.1| - 0.084 12.4 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Mg_chelatase PF01078.16 gi|282163764|ref|YP_003356149.1| - 0.088 11.9 0.0 0.23 10.5 0.0 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI GSH-S_N PF02951.9 gi|282163764|ref|YP_003356149.1| - 0.1 12.4 0.0 0.37 10.6 0.0 2.0 2 0 0 2 2 1 0 Prokaryotic glutathione synthetase, N-terminal domain Thymidylate_kin PF02223.12 gi|282163764|ref|YP_003356149.1| - 0.12 11.7 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase SbcCD_C PF13558.1 gi|282163764|ref|YP_003356149.1| - 0.13 12.2 0.0 0.59 10.0 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.17 gi|282163764|ref|YP_003356149.1| - 0.15 12.2 0.0 0.33 11.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase FecCD PF01032.13 gi|282163765|ref|YP_003356150.1| - 1.2e-93 313.3 39.5 1.5e-93 313.0 27.3 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|282163765|ref|YP_003356150.1| - 0.00013 21.3 19.3 0.00013 21.3 13.4 2.2 2 1 0 2 2 2 1 ABC 3 transport family KASH PF10541.4 gi|282163765|ref|YP_003356150.1| - 0.24 11.2 2.1 0.83 9.5 1.5 1.9 1 0 0 1 1 1 0 Nuclear envelope localisation domain HTH_IclR PF09339.5 gi|282163766|ref|YP_003356151.1| - 1.6e-08 34.0 0.0 3.4e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|282163766|ref|YP_003356151.1| - 1.7e-08 33.6 0.0 3.4e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|282163766|ref|YP_003356151.1| - 4.4e-08 32.6 0.2 7.7e-08 31.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|282163766|ref|YP_003356151.1| - 9.4e-08 31.7 0.0 1.9e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|282163766|ref|YP_003356151.1| - 1.1e-06 28.1 0.0 2.7e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|282163766|ref|YP_003356151.1| - 3.9e-06 26.4 1.2 1.2e-05 24.8 0.3 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|282163766|ref|YP_003356151.1| - 3.9e-06 27.0 0.0 6.3e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|282163766|ref|YP_003356151.1| - 1.5e-05 24.6 0.0 3.3e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|282163766|ref|YP_003356151.1| - 0.00014 21.7 0.2 0.0027 17.6 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.7 gi|282163766|ref|YP_003356151.1| - 0.00057 19.2 0.0 0.0011 18.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.15 gi|282163766|ref|YP_003356151.1| - 0.00089 19.3 0.1 0.0018 18.3 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator FaeA PF04703.7 gi|282163766|ref|YP_003356151.1| - 0.0011 19.1 0.0 0.0021 18.1 0.0 1.5 1 0 0 1 1 1 1 FaeA-like protein HTH_29 PF13551.1 gi|282163766|ref|YP_003356151.1| - 0.0019 18.3 0.0 0.0025 17.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix PadR PF03551.9 gi|282163766|ref|YP_003356151.1| - 0.0024 17.5 0.3 0.0054 16.4 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_28 PF13518.1 gi|282163766|ref|YP_003356151.1| - 0.0027 17.6 0.0 0.0052 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|282163766|ref|YP_003356151.1| - 0.0034 17.4 0.0 0.011 15.7 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain Ftsk_gamma PF09397.5 gi|282163766|ref|YP_003356151.1| - 0.0038 16.9 0.0 0.015 15.0 0.0 1.9 1 1 0 1 1 1 1 Ftsk gamma domain B-block_TFIIIC PF04182.7 gi|282163766|ref|YP_003356151.1| - 0.0072 16.1 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_10 PF04967.7 gi|282163766|ref|YP_003356151.1| - 0.009 15.5 0.5 0.033 13.7 0.0 2.1 2 1 1 3 3 2 1 HTH DNA binding domain DUF2250 PF10007.4 gi|282163766|ref|YP_003356151.1| - 0.011 15.6 0.9 0.06 13.2 0.1 2.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) EAP30 PF04157.11 gi|282163766|ref|YP_003356151.1| - 0.016 14.3 0.0 0.098 11.8 0.0 1.9 1 1 1 2 2 2 0 EAP30/Vps36 family FeoC PF09012.5 gi|282163766|ref|YP_003356151.1| - 0.016 14.8 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_Tnp_1 PF01527.15 gi|282163766|ref|YP_003356151.1| - 0.016 15.1 0.0 0.047 13.6 0.0 1.8 1 1 1 2 2 1 0 Transposase Sigma70_r4 PF04545.11 gi|282163766|ref|YP_003356151.1| - 0.017 14.4 0.0 0.033 13.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|282163766|ref|YP_003356151.1| - 0.021 14.4 0.0 0.043 13.4 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|282163766|ref|YP_003356151.1| - 0.021 14.5 0.0 0.057 13.2 0.0 1.7 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.1 gi|282163766|ref|YP_003356151.1| - 0.021 14.3 0.0 0.037 13.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|282163766|ref|YP_003356151.1| - 0.035 13.6 0.0 0.072 12.6 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain TetR_N PF00440.18 gi|282163766|ref|YP_003356151.1| - 0.042 13.5 0.0 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family TFIIE_alpha PF02002.12 gi|282163766|ref|YP_003356151.1| - 0.046 13.2 0.7 0.07 12.6 0.1 1.6 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_45 PF14947.1 gi|282163766|ref|YP_003356151.1| - 0.056 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix PAP2_3 PF14378.1 gi|282163768|ref|YP_003356153.1| - 0.026 14.0 0.9 0.033 13.6 0.1 1.5 2 0 0 2 2 2 0 PAP2 superfamily zinc_ribbon_2 PF13240.1 gi|282163770|ref|YP_003356155.1| - 0.0012 18.2 0.2 0.48 9.9 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|282163770|ref|YP_003356155.1| - 0.0062 16.4 0.1 1.6 8.7 0.0 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|282163770|ref|YP_003356155.1| - 0.0063 16.0 0.4 0.8 9.3 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|282163770|ref|YP_003356155.1| - 0.0077 15.4 0.7 1.4 8.1 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|282163770|ref|YP_003356155.1| - 0.012 15.2 0.6 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|282163770|ref|YP_003356155.1| - 0.016 15.2 0.5 0.89 9.6 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.14 gi|282163770|ref|YP_003356155.1| - 0.06 12.8 0.4 0.77 9.3 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-IS66 PF13005.2 gi|282163770|ref|YP_003356155.1| - 0.061 13.3 0.8 2.1 8.3 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 HypA PF01155.14 gi|282163770|ref|YP_003356155.1| - 0.07 12.8 0.3 6.3 6.5 0.0 2.0 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-FPG_IleRS PF06827.9 gi|282163770|ref|YP_003356155.1| - 0.072 12.7 0.3 10 5.8 0.0 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|282163770|ref|YP_003356155.1| - 0.083 12.7 1.0 0.46 10.3 0.7 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-tcix PF14952.1 gi|282163770|ref|YP_003356155.1| - 0.088 12.1 1.7 4.7 6.6 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding PAR1 PF06521.6 gi|282163770|ref|YP_003356155.1| - 0.12 11.9 0.1 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 PAR1 protein RNA_POL_M_15KD PF02150.11 gi|282163770|ref|YP_003356155.1| - 0.14 11.8 0.4 3 7.5 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit YhfH PF14149.1 gi|282163770|ref|YP_003356155.1| - 0.15 11.8 2.3 2.9 7.7 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein DNA_RNApol_7kD PF03604.8 gi|282163770|ref|YP_003356155.1| - 0.15 11.5 0.9 12 5.4 0.0 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|282163770|ref|YP_003356155.1| - 1.9 7.8 4.1 16 4.9 2.9 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding AT_hook PF02178.14 gi|282163771|ref|YP_003356156.1| - 0.061 13.0 7.2 0.19 11.5 5.0 1.9 1 0 0 1 1 1 0 AT hook motif Sulfolobus_pRN PF05584.6 gi|282163772|ref|YP_003356157.1| - 0.0013 18.7 0.1 0.0019 18.0 0.1 1.3 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_45 PF14947.1 gi|282163772|ref|YP_003356157.1| - 0.0013 18.5 0.2 0.0032 17.2 0.1 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|282163772|ref|YP_003356157.1| - 0.018 15.3 0.2 0.038 14.3 0.1 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|282163772|ref|YP_003356157.1| - 0.023 14.3 0.1 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) TFIIE_alpha PF02002.12 gi|282163772|ref|YP_003356157.1| - 0.1 12.0 0.2 0.13 11.7 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit 3-HAO PF06052.7 gi|282163772|ref|YP_003356157.1| - 0.13 11.6 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase Peptidase_S8 PF00082.17 gi|282163773|ref|YP_003356158.1| - 0.0028 16.8 0.0 0.0032 16.6 0.0 1.0 1 0 0 1 1 1 1 Subtilase family Methyltransf_12 PF08242.7 gi|282163774|ref|YP_003356159.1| - 2.5e-08 34.2 0.0 3.9e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282163774|ref|YP_003356159.1| - 2.5e-08 34.2 0.0 4.9e-08 33.3 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282163774|ref|YP_003356159.1| - 8.4e-07 29.5 0.0 1.4e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282163774|ref|YP_003356159.1| - 2e-06 27.6 0.0 2.4e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282163774|ref|YP_003356159.1| - 3.3e-06 27.3 0.0 6.2e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163774|ref|YP_003356159.1| - 6.8e-06 25.7 0.0 8.8e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|282163774|ref|YP_003356159.1| - 0.0027 17.1 0.0 0.0039 16.5 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|282163774|ref|YP_003356159.1| - 0.0037 17.2 0.0 0.005 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|282163774|ref|YP_003356159.1| - 0.0082 15.1 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) MTS PF05175.9 gi|282163774|ref|YP_003356159.1| - 0.014 14.7 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|282163774|ref|YP_003356159.1| - 0.048 12.3 0.1 1.2 7.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1698) RrnaAD PF00398.15 gi|282163774|ref|YP_003356159.1| - 0.054 12.5 0.0 0.073 12.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|282163774|ref|YP_003356159.1| - 0.061 12.4 0.0 0.084 11.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|282163774|ref|YP_003356159.1| - 0.077 12.0 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|282163774|ref|YP_003356159.1| - 0.15 11.7 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain ABC_tran PF00005.22 gi|282163775|ref|YP_003356160.1| - 5.7e-26 91.4 0.0 9.2e-26 90.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163775|ref|YP_003356160.1| - 8.9e-13 48.8 0.0 2.4e-08 34.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|282163775|ref|YP_003356160.1| - 0.00011 20.9 0.1 0.14 10.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|282163775|ref|YP_003356160.1| - 0.0025 18.1 0.0 0.0041 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|282163775|ref|YP_003356160.1| - 0.0026 17.7 0.0 0.0095 15.9 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.17 gi|282163775|ref|YP_003356160.1| - 0.0031 16.9 0.0 0.0051 16.2 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|282163775|ref|YP_003356160.1| - 0.012 15.1 0.1 0.022 14.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|282163775|ref|YP_003356160.1| - 0.015 15.0 1.0 0.13 12.0 0.0 2.8 3 1 0 3 3 3 0 Part of AAA domain SbcCD_C PF13558.1 gi|282163775|ref|YP_003356160.1| - 0.027 14.3 0.0 0.057 13.3 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|282163775|ref|YP_003356160.1| - 0.045 13.9 0.1 0.29 11.3 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|282163775|ref|YP_003356160.1| - 0.053 12.2 0.9 0.088 11.5 0.0 1.7 2 0 0 2 2 2 0 ArgK protein AAA_33 PF13671.1 gi|282163775|ref|YP_003356160.1| - 0.075 12.9 0.1 0.21 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|282163775|ref|YP_003356160.1| - 0.12 12.0 1.3 0.19 11.3 0.1 1.9 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|282163775|ref|YP_003356160.1| - 0.13 11.8 0.1 0.43 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain Repressor_Mnt PF11423.3 gi|282163775|ref|YP_003356160.1| - 2.9 7.2 4.6 14 5.0 0.2 3.4 4 0 0 4 4 4 0 Regulatory protein Mnt ABC2_membrane_2 PF12679.2 gi|282163776|ref|YP_003356161.1| - 4e-17 61.9 22.6 5.4e-17 61.5 15.6 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|282163776|ref|YP_003356161.1| - 1.8e-09 37.1 15.4 1.8e-09 37.1 10.7 1.5 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|282163776|ref|YP_003356161.1| - 3.9e-09 36.0 18.7 3.9e-09 36.0 13.0 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282163776|ref|YP_003356161.1| - 6.2e-07 28.8 24.6 9.3e-07 28.2 16.1 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF939 PF06081.6 gi|282163776|ref|YP_003356161.1| - 0.0048 16.7 9.3 0.0048 16.7 6.4 3.2 3 1 1 4 4 4 1 Bacterial protein of unknown function (DUF939) CCG PF02754.11 gi|282163777|ref|YP_003356162.1| - 2.5e-34 117.1 1.8 6.1e-16 58.2 0.2 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|282163777|ref|YP_003356162.1| - 6.9e-09 35.6 9.4 6.9e-09 35.6 6.5 2.7 3 1 1 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282163777|ref|YP_003356162.1| - 4.3e-08 33.4 8.8 4.3e-08 33.4 6.1 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282163777|ref|YP_003356162.1| - 2.7e-07 30.2 24.0 1.1e-06 28.2 8.8 3.1 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282163777|ref|YP_003356162.1| - 1.3e-06 28.1 8.7 1.3e-06 28.1 6.1 3.0 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282163777|ref|YP_003356162.1| - 1.5e-05 25.1 24.7 7.2e-05 22.9 9.1 3.5 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282163777|ref|YP_003356162.1| - 5.2e-05 23.9 9.5 0.013 16.2 0.2 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|282163777|ref|YP_003356162.1| - 6.7e-05 22.8 22.9 0.0063 16.7 1.8 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|282163777|ref|YP_003356162.1| - 0.00012 22.3 22.1 0.00036 20.8 0.8 4.2 4 1 1 5 5 5 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282163777|ref|YP_003356162.1| - 0.00017 21.8 12.4 0.00017 21.8 8.6 4.0 2 2 1 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282163777|ref|YP_003356162.1| - 0.0011 18.4 5.2 0.0011 18.4 3.6 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282163777|ref|YP_003356162.1| - 0.0014 18.4 16.6 0.0056 16.5 2.4 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|282163777|ref|YP_003356162.1| - 0.0051 16.4 0.7 0.0051 16.4 0.5 3.0 2 1 1 3 3 3 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|282163777|ref|YP_003356162.1| - 0.016 15.0 4.3 0.016 15.0 3.0 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|282163777|ref|YP_003356162.1| - 0.04 14.3 15.1 0.088 13.2 1.0 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|282163777|ref|YP_003356162.1| - 0.14 12.6 11.7 1.6 9.3 0.5 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|282163777|ref|YP_003356162.1| - 9.6 7.0 33.9 0.12 12.9 5.2 4.6 4 0 0 4 4 4 0 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|282163778|ref|YP_003356163.1| - 0.0002 20.3 4.4 0.0017 17.2 1.4 2.0 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|282163778|ref|YP_003356163.1| - 0.036 13.9 4.2 0.26 11.1 0.4 2.5 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|282163778|ref|YP_003356163.1| - 0.082 11.7 1.2 1.7 7.4 0.7 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|282163778|ref|YP_003356163.1| - 0.15 12.1 3.2 0.44 10.5 2.2 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain KGG PF10685.4 gi|282163779|ref|YP_003356164.1| - 7.1e-07 29.0 6.2 0.0063 16.4 0.2 2.7 3 0 0 3 3 3 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282163779|ref|YP_003356164.1| - 9.6e-07 29.0 4.3 1.1e-06 28.8 3.0 1.0 1 0 0 1 1 1 1 Small hydrophilic plant seed protein UvdE PF03851.9 gi|282163780|ref|YP_003356165.1| - 2.6e-30 105.3 0.0 3.7e-30 104.8 0.0 1.1 1 0 0 1 1 1 1 UV-endonuclease UvdE ODV-E18 PF10717.4 gi|282163781|ref|YP_003356166.1| - 0.046 13.1 0.0 0.053 12.9 0.0 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Aminotran_1_2 PF00155.16 gi|282163783|ref|YP_003356168.1| - 1.3e-64 218.4 0.0 1.5e-64 218.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|282163783|ref|YP_003356168.1| - 6.3e-15 55.0 0.1 3.1e-14 52.8 0.0 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|282163783|ref|YP_003356168.1| - 5.7e-09 35.1 0.0 8.6e-09 34.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|282163783|ref|YP_003356168.1| - 6e-08 31.3 0.0 7.8e-08 30.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|282163783|ref|YP_003356168.1| - 5.9e-07 28.9 0.0 1e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.15 gi|282163783|ref|YP_003356168.1| - 0.018 13.6 0.0 0.029 12.9 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain DUF362 PF04015.7 gi|282163784|ref|YP_003356169.1| - 8e-61 205.1 0.2 1e-60 204.7 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_2 PF12797.2 gi|282163784|ref|YP_003356169.1| - 2.2e-07 30.4 19.0 0.00093 18.9 4.5 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|282163784|ref|YP_003356169.1| - 4.4e-07 29.2 25.3 0.00021 20.7 2.6 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282163784|ref|YP_003356169.1| - 1.7e-06 28.3 16.1 3.7e-06 27.2 11.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282163784|ref|YP_003356169.1| - 9.5e-06 25.3 16.4 3e-05 23.7 11.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282163784|ref|YP_003356169.1| - 2.9e-05 23.7 17.8 0.0039 17.0 2.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282163784|ref|YP_003356169.1| - 7.2e-05 22.5 11.9 0.00019 21.2 8.3 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282163784|ref|YP_003356169.1| - 0.00019 21.6 9.5 0.038 14.3 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282163784|ref|YP_003356169.1| - 0.00042 20.5 16.9 0.00042 20.5 11.7 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282163784|ref|YP_003356169.1| - 0.0034 17.3 18.3 0.042 13.8 12.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain DUF2088 PF09861.4 gi|282163784|ref|YP_003356169.1| - 0.0097 14.9 0.0 0.018 14.0 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF2088) Fer4_16 PF13484.1 gi|282163784|ref|YP_003356169.1| - 0.016 15.9 15.7 0.025 15.3 3.2 2.6 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|282163784|ref|YP_003356169.1| - 0.37 11.3 14.0 0.87 10.1 1.9 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|282163784|ref|YP_003356169.1| - 2 8.9 18.0 2.8 8.4 2.5 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282163784|ref|YP_003356169.1| - 3 8.3 15.2 0.87 10.0 2.4 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Flavodoxin_5 PF12724.2 gi|282163785|ref|YP_003356170.1| - 8.5e-14 51.7 0.0 1e-13 51.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|282163785|ref|YP_003356170.1| - 1.8e-06 27.4 0.0 2.2e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|282163785|ref|YP_003356170.1| - 0.0011 18.3 0.0 0.0055 16.0 0.0 1.9 1 1 1 2 2 2 1 Flavodoxin FMN_red PF03358.10 gi|282163785|ref|YP_003356170.1| - 0.013 15.0 0.0 2.4 7.6 0.0 2.4 1 1 1 2 2 2 0 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|282163785|ref|YP_003356170.1| - 0.042 13.8 0.0 0.054 13.5 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin RuBisCO_large PF00016.15 gi|282163786|ref|YP_003356171.1| - 7.5e-63 212.2 0.0 6.3e-62 209.1 0.0 1.9 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|282163786|ref|YP_003356171.1| - 3e-09 36.6 0.0 2e-08 33.9 0.0 2.3 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain PEP_mutase PF13714.1 gi|282163786|ref|YP_003356171.1| - 0.021 14.0 0.0 0.043 13.0 0.0 1.5 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase DUF2493 PF10686.4 gi|282163786|ref|YP_003356171.1| - 0.072 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2493) AAA_26 PF13500.1 gi|282163787|ref|YP_003356172.1| - 3.6e-36 124.6 0.0 6.1e-36 123.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.7 gi|282163787|ref|YP_003356172.1| - 1.5e-26 92.0 0.0 2.9e-26 91.1 0.0 1.5 1 0 0 1 1 1 1 DRTGG domain CbiA PF01656.18 gi|282163787|ref|YP_003356172.1| - 0.00016 21.1 0.3 0.00028 20.3 0.2 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Hpr_kinase_N PF02603.11 gi|282163787|ref|YP_003356172.1| - 0.1 12.2 0.0 0.54 9.9 0.0 2.3 2 1 0 2 2 2 0 HPr Serine kinase N terminus Acetyltransf_4 PF13420.1 gi|282163788|ref|YP_003356173.1| - 2.8e-16 59.8 0.0 3.4e-16 59.5 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|282163788|ref|YP_003356173.1| - 1.8e-14 53.8 0.0 2.1e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|282163788|ref|YP_003356173.1| - 4.1e-13 49.6 0.0 4.7e-13 49.4 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|282163788|ref|YP_003356173.1| - 3.2e-12 46.2 0.0 4.5e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|282163788|ref|YP_003356173.1| - 2.4e-08 33.8 0.0 3e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|282163788|ref|YP_003356173.1| - 6.4e-08 32.6 0.0 9.2e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|282163788|ref|YP_003356173.1| - 5.8e-05 23.0 0.0 8e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|282163788|ref|YP_003356173.1| - 0.00082 19.2 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|282163788|ref|YP_003356173.1| - 0.0022 17.7 0.0 0.0038 16.9 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_13 PF13880.1 gi|282163788|ref|YP_003356173.1| - 0.076 12.7 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase DUF2156 PF09924.4 gi|282163788|ref|YP_003356173.1| - 0.12 11.1 0.0 0.15 10.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2156) Acetyltransf_1 PF00583.19 gi|282163789|ref|YP_003356174.1| - 3.8e-16 58.9 0.0 5.6e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|282163789|ref|YP_003356174.1| - 1.3e-12 47.8 0.0 1.6e-12 47.6 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|282163789|ref|YP_003356174.1| - 4.7e-10 39.7 0.0 5.3e-10 39.6 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|282163789|ref|YP_003356174.1| - 2.9e-09 37.0 0.0 3.7e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|282163789|ref|YP_003356174.1| - 4.8e-08 33.0 0.0 7.1e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|282163789|ref|YP_003356174.1| - 0.0013 18.4 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|282163789|ref|YP_003356174.1| - 0.0047 16.7 0.0 0.0069 16.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|282163789|ref|YP_003356174.1| - 0.016 15.0 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|282163789|ref|YP_003356174.1| - 0.03 14.2 0.0 0.043 13.6 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase QRPTase_C PF01729.14 gi|282163790|ref|YP_003356175.1| - 1.4e-61 206.9 0.9 1.7e-61 206.6 0.6 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|282163790|ref|YP_003356175.1| - 1.5e-22 79.1 0.1 4.9e-22 77.5 0.0 1.8 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain TMP-TENI PF02581.12 gi|282163790|ref|YP_003356175.1| - 0.00022 20.3 0.4 0.00059 18.9 0.3 1.6 1 1 0 1 1 1 1 Thiamine monophosphate synthase/TENI Ribul_P_3_epim PF00834.14 gi|282163790|ref|YP_003356175.1| - 0.0022 17.1 1.3 0.023 13.8 0.1 2.2 1 1 1 2 2 2 1 Ribulose-phosphate 3 epimerase family DHQS PF01959.11 gi|282163790|ref|YP_003356175.1| - 0.0079 14.9 0.5 0.011 14.4 0.3 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Ribosomal_L1 PF00687.16 gi|282163790|ref|YP_003356175.1| - 0.04 13.2 0.3 0.062 12.6 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L1p/L10e family Biotin_lipoyl_2 PF13533.1 gi|282163790|ref|YP_003356175.1| - 0.078 12.6 0.1 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Biotin-lipoyl like PcrB PF01884.12 gi|282163790|ref|YP_003356175.1| - 0.1 11.8 2.2 7 5.8 0.1 2.4 1 1 1 2 2 2 0 PcrB family DUF108 PF01958.13 gi|282163791|ref|YP_003356176.1| - 4.6e-33 113.3 0.8 8.8e-33 112.4 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|282163791|ref|YP_003356176.1| - 9e-27 93.8 0.7 9e-27 93.8 0.5 1.6 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|282163791|ref|YP_003356176.1| - 1.2e-07 32.2 0.4 1.1e-06 29.1 0.2 2.2 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|282163791|ref|YP_003356176.1| - 2.4e-07 31.0 1.5 5.1e-07 30.0 1.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.15 gi|282163791|ref|YP_003356176.1| - 6.3e-07 29.3 0.2 1.4e-06 28.2 0.0 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Shikimate_DH PF01488.15 gi|282163791|ref|YP_003356176.1| - 7.8e-06 26.0 0.2 1.6e-05 25.0 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.19 gi|282163791|ref|YP_003356176.1| - 1e-05 25.7 0.1 1.5e-05 25.2 0.1 1.4 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|282163791|ref|YP_003356176.1| - 1.8e-05 23.6 0.5 3.2e-05 22.8 0.3 1.4 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family NAD_Gly3P_dh_N PF01210.18 gi|282163791|ref|YP_003356176.1| - 1.8e-05 24.4 0.4 8.9e-05 22.2 0.3 2.0 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|282163791|ref|YP_003356176.1| - 2.5e-05 23.5 0.1 3.9e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|282163791|ref|YP_003356176.1| - 0.0017 18.0 3.0 0.078 12.6 1.2 3.0 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|282163791|ref|YP_003356176.1| - 0.0019 18.0 0.1 0.0028 17.5 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|282163791|ref|YP_003356176.1| - 0.0026 17.2 0.2 0.01 15.2 0.2 2.1 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|282163791|ref|YP_003356176.1| - 0.0058 15.6 0.4 0.0094 14.9 0.2 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase Gp_dh_N PF00044.19 gi|282163791|ref|YP_003356176.1| - 0.0086 16.0 0.3 0.095 12.6 0.1 2.4 2 1 1 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|282163791|ref|YP_003356176.1| - 0.012 15.6 1.0 0.28 11.1 0.3 2.7 1 1 1 2 2 2 0 TrkA-N domain ThiF PF00899.16 gi|282163791|ref|YP_003356176.1| - 0.033 13.9 0.8 5.1 6.9 0.1 2.4 2 0 0 2 2 2 0 ThiF family adh_short PF00106.20 gi|282163791|ref|YP_003356176.1| - 0.042 13.7 1.4 0.068 13.0 1.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Rossmann-like PF10727.4 gi|282163791|ref|YP_003356176.1| - 0.049 13.3 1.4 0.087 12.5 0.8 1.6 1 1 0 1 1 1 0 Rossmann-like domain CBM-like PF14683.1 gi|282163792|ref|YP_003356177.1| - 0.048 13.2 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain III Acetyltransf_1 PF00583.19 gi|282163794|ref|YP_003356179.1| - 1.5e-12 47.3 0.0 2e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|282163794|ref|YP_003356179.1| - 2.2e-10 40.6 0.0 2.8e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|282163794|ref|YP_003356179.1| - 2.3e-08 34.0 0.0 3.2e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|282163794|ref|YP_003356179.1| - 5.6e-08 32.9 0.0 7e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|282163794|ref|YP_003356179.1| - 6.1e-07 29.5 0.1 8e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|282163794|ref|YP_003356179.1| - 1.3e-06 28.0 0.0 1.9e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|282163794|ref|YP_003356179.1| - 3.3e-06 27.3 0.0 4e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|282163794|ref|YP_003356179.1| - 0.009 15.8 0.0 0.015 15.1 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|282163794|ref|YP_003356179.1| - 0.017 14.9 0.0 0.035 13.9 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DNA_binding_1 PF01035.15 gi|282163795|ref|YP_003356180.1| - 8.1e-32 108.8 0.0 1.1e-31 108.4 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain CsgF PF10614.4 gi|282163796|ref|YP_003356181.1| - 0.014 15.3 0.3 0.82 9.6 0.0 2.2 1 1 1 2 2 2 0 Type VIII secretion system (T8SS), CsgF protein WD40 PF00400.27 gi|282163797|ref|YP_003356182.1| - 2e-67 220.8 8.9 2.6e-11 42.9 0.0 7.1 7 0 0 7 7 7 7 WD domain, G-beta repeat Cytochrom_D1 PF02239.11 gi|282163797|ref|YP_003356182.1| - 6.2e-08 31.3 0.4 0.0003 19.1 0.0 2.3 2 0 0 2 2 2 2 Cytochrome D1 heme domain Nup160 PF11715.3 gi|282163797|ref|YP_003356182.1| - 1.3e-06 26.8 0.2 0.0081 14.3 0.0 3.9 2 2 2 4 4 4 2 Nucleoporin Nup120/160 eIF2A PF08662.6 gi|282163797|ref|YP_003356182.1| - 6.5e-05 22.7 0.0 0.0011 18.6 0.0 2.1 2 0 0 2 2 2 1 Eukaryotic translation initiation factor eIF2A SGL PF08450.7 gi|282163797|ref|YP_003356182.1| - 0.00027 20.3 0.5 0.048 13.0 0.1 2.8 3 0 0 3 3 3 1 SMP-30/Gluconolaconase/LRE-like region DUF290 PF01060.18 gi|282163797|ref|YP_003356182.1| - 0.0037 17.2 0.0 1.2 9.1 0.0 2.9 2 1 1 3 3 3 1 Transthyretin-like family VID27 PF08553.5 gi|282163797|ref|YP_003356182.1| - 0.0049 15.1 0.2 0.63 8.1 0.0 2.1 2 0 0 2 2 2 2 VID27 cytoplasmic protein PQQ_3 PF13570.1 gi|282163797|ref|YP_003356182.1| - 0.0056 16.9 8.4 2.6 8.4 0.2 5.1 5 0 0 5 5 5 1 PQQ-like domain TrfA PF07042.6 gi|282163797|ref|YP_003356182.1| - 0.01 14.6 0.0 0.016 14.0 0.0 1.2 1 0 0 1 1 1 0 TrfA protein PD40 PF07676.7 gi|282163797|ref|YP_003356182.1| - 0.11 12.2 0.1 29 4.4 0.0 3.8 4 0 0 4 4 4 0 WD40-like Beta Propeller Repeat Bacteriocin_IIi PF11758.3 gi|282163797|ref|YP_003356182.1| - 0.35 10.5 1.6 18 4.9 0.1 2.9 3 0 0 3 3 3 0 Aureocin-like type II bacteriocin Tautomerase PF01361.16 gi|282163798|ref|YP_003356183.1| - 3.3e-15 55.4 0.2 4.2e-15 55.1 0.1 1.2 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|282163798|ref|YP_003356183.1| - 3e-07 30.3 0.0 3.2e-07 30.2 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_3 PF14832.1 gi|282163798|ref|YP_003356183.1| - 4.1e-05 23.6 0.0 4.2e-05 23.5 0.0 1.0 1 0 0 1 1 1 1 Putative oxalocrotonate tautomerase enzyme Exo_endo_phos PF03372.18 gi|282163799|ref|YP_003356184.1| - 3.3e-28 99.3 0.0 3.8e-28 99.0 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|282163799|ref|YP_003356184.1| - 1.2e-12 47.4 0.0 1.6e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase ASFV_L11L PF05293.6 gi|282163800|ref|YP_003356185.1| - 0.34 11.0 5.3 0.43 10.7 3.7 1.2 1 0 0 1 1 1 0 African swine fever virus (ASFV) L11L protein BTP PF05232.7 gi|282163800|ref|YP_003356185.1| - 1.1 9.0 10.9 0.064 13.0 2.1 2.1 1 1 1 2 2 2 0 Bacterial Transmembrane Pair family DUF2304 PF10066.4 gi|282163800|ref|YP_003356185.1| - 1.8 8.4 6.6 4.1 7.2 4.6 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) MCH PF02289.11 gi|282163802|ref|YP_003356187.1| - 7.1e-129 429.3 2.7 8e-129 429.1 1.9 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) GCHY-1 PF02649.9 gi|282163803|ref|YP_003356188.1| - 1.3e-88 296.8 3.6 1.4e-88 296.6 2.5 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.13 gi|282163803|ref|YP_003356188.1| - 0.0025 17.9 0.4 0.48 10.6 0.0 3.1 3 0 0 3 3 3 1 Dihydroneopterin aldolase Ndr PF03096.9 gi|282163803|ref|YP_003356188.1| - 0.07 11.6 0.2 0.17 10.3 0.1 1.6 1 1 1 2 2 2 0 Ndr family Trypan_PARP PF05887.6 gi|282163804|ref|YP_003356189.1| - 0.00014 21.7 2.2 0.00019 21.3 1.5 1.2 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) PT PF04886.7 gi|282163804|ref|YP_003356189.1| - 0.00066 18.9 29.5 0.00066 18.9 20.5 2.4 1 1 1 2 2 2 1 PT repeat Big_1 PF02369.11 gi|282163804|ref|YP_003356189.1| - 0.0014 18.5 1.5 0.0014 18.5 1.1 2.3 1 1 0 2 2 2 1 Bacterial Ig-like domain (group 1) DUF4198 PF10670.4 gi|282163804|ref|YP_003356189.1| - 0.0026 17.8 0.0 0.0047 16.9 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) MGC-24 PF05283.6 gi|282163804|ref|YP_003356189.1| - 0.2 11.4 15.6 0.38 10.5 10.8 1.5 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) TMEM154 PF15102.1 gi|282163804|ref|YP_003356189.1| - 3 7.5 10.3 7.3 6.2 7.1 1.8 1 1 0 1 1 1 0 TMEM154 protein family HK PF02110.10 gi|282163805|ref|YP_003356190.1| - 8.5e-85 283.8 1.9 9.9e-85 283.6 1.3 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.12 gi|282163805|ref|YP_003356190.1| - 0.00012 21.4 1.0 0.00015 21.1 0.7 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.7 gi|282163805|ref|YP_003356190.1| - 0.0029 16.8 0.5 0.0052 16.0 0.4 1.4 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase TMP-TENI PF02581.12 gi|282163806|ref|YP_003356191.1| - 1.1e-60 203.8 0.3 1.4e-60 203.5 0.2 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|282163806|ref|YP_003356191.1| - 3.5e-05 23.1 2.4 4.6e-05 22.7 1.6 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase NanE PF04131.9 gi|282163806|ref|YP_003356191.1| - 0.00013 21.0 0.1 0.0002 20.3 0.0 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.9 gi|282163806|ref|YP_003356191.1| - 0.00031 19.9 0.3 0.00059 18.9 0.2 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.7 gi|282163806|ref|YP_003356191.1| - 0.009 14.9 0.9 0.02 13.8 0.2 1.8 3 0 0 3 3 3 1 Protein of unknown function (DUF561) PcrB PF01884.12 gi|282163806|ref|YP_003356191.1| - 0.034 13.3 4.1 0.17 11.1 0.4 2.7 3 0 0 3 3 3 0 PcrB family Ribul_P_3_epim PF00834.14 gi|282163806|ref|YP_003356191.1| - 0.065 12.3 0.4 0.15 11.1 0.3 1.6 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Trp_syntA PF00290.15 gi|282163806|ref|YP_003356191.1| - 0.11 10.9 0.4 0.25 9.8 0.3 1.5 1 0 0 1 1 1 0 Tryptophan synthase alpha chain FMN_dh PF01070.13 gi|282163806|ref|YP_003356191.1| - 0.17 10.6 1.5 1.5 7.5 0.1 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Exosortase_EpsH PF09721.5 gi|282163807|ref|YP_003356192.1| - 1.8e-46 158.4 23.7 2.2e-46 158.2 16.4 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) DUF192 PF02643.10 gi|282163808|ref|YP_003356193.1| - 8.9e-36 121.8 0.0 1.1e-35 121.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF1905 PF08922.6 gi|282163808|ref|YP_003356193.1| - 0.001 18.5 0.0 0.0044 16.5 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1905) DAO PF01266.19 gi|282163809|ref|YP_003356194.1| - 8.8e-47 159.7 1.7 1.1e-46 159.3 1.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|282163809|ref|YP_003356194.1| - 5.7e-06 25.5 1.7 0.00016 20.8 1.2 2.2 1 1 0 1 1 1 1 Thi4 family 3HCDH_N PF02737.13 gi|282163809|ref|YP_003356194.1| - 4.6e-05 23.1 0.2 8.8e-05 22.2 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|282163809|ref|YP_003356194.1| - 8.9e-05 21.5 3.7 0.0031 16.4 0.0 2.4 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|282163809|ref|YP_003356194.1| - 0.0012 18.8 1.4 0.0038 17.2 0.8 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|282163809|ref|YP_003356194.1| - 0.0031 17.4 2.2 0.016 15.0 1.5 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|282163809|ref|YP_003356194.1| - 0.004 17.5 0.7 0.18 12.2 1.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|282163809|ref|YP_003356194.1| - 0.0092 15.4 0.5 0.02 14.3 0.2 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.1 gi|282163809|ref|YP_003356194.1| - 0.017 14.9 2.7 0.98 9.1 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|282163809|ref|YP_003356194.1| - 0.035 14.1 0.2 2.9 7.9 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|282163809|ref|YP_003356194.1| - 0.055 13.7 0.2 0.5 10.6 0.1 2.5 2 1 0 2 2 2 0 Putative NAD(P)-binding PAZ_siRNAbind PF12212.3 gi|282163809|ref|YP_003356194.1| - 0.067 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Piwi/Argonaute/Zwille siRNA-binding domain FAD_binding_2 PF00890.19 gi|282163809|ref|YP_003356194.1| - 0.07 11.9 3.8 0.1 11.4 2.7 1.6 1 1 0 1 1 1 0 FAD binding domain TrkA_N PF02254.13 gi|282163809|ref|YP_003356194.1| - 0.12 12.3 0.3 0.39 10.7 0.2 2.0 1 1 0 1 1 1 0 TrkA-N domain NAD_binding_10 PF13460.1 gi|282163809|ref|YP_003356194.1| - 0.13 12.2 1.0 0.28 11.1 0.7 1.6 1 0 0 1 1 1 0 NADH(P)-binding FAD_binding_3 PF01494.14 gi|282163809|ref|YP_003356194.1| - 0.17 10.8 6.2 0.039 12.9 2.0 1.5 2 0 0 2 2 2 0 FAD binding domain Trp_halogenase PF04820.9 gi|282163809|ref|YP_003356194.1| - 0.44 9.1 2.0 0.87 8.1 0.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase MC1 PF05854.6 gi|282163810|ref|YP_003356195.1| - 1.4e-29 101.8 0.7 1.7e-29 101.5 0.5 1.1 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 HTH_45 PF14947.1 gi|282163811|ref|YP_003356196.1| - 0.00039 20.1 0.3 0.0005 19.8 0.2 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix TFIIE_alpha PF02002.12 gi|282163811|ref|YP_003356196.1| - 0.006 16.0 0.2 0.0066 15.9 0.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HxlR PF01638.12 gi|282163811|ref|YP_003356196.1| - 0.027 14.1 0.1 0.08 12.5 0.1 1.8 1 1 0 1 1 1 0 HxlR-like helix-turn-helix DUF977 PF06163.6 gi|282163811|ref|YP_003356196.1| - 0.061 13.0 0.0 0.072 12.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Sulfolobus_pRN PF05584.6 gi|282163811|ref|YP_003356196.1| - 0.074 13.0 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Mrr_N PF14338.1 gi|282163811|ref|YP_003356196.1| - 0.09 12.8 0.3 0.17 11.9 0.2 1.6 1 1 0 1 1 1 0 Mrr N-terminal domain TrmB PF01978.14 gi|282163811|ref|YP_003356196.1| - 0.12 12.1 0.3 0.25 11.0 0.2 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|282163811|ref|YP_003356196.1| - 0.12 12.4 0.1 0.22 11.6 0.1 1.5 1 1 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|282163811|ref|YP_003356196.1| - 0.23 11.8 0.9 0.38 11.1 0.2 1.8 2 1 0 2 2 2 0 Winged helix DNA-binding domain HEAT_2 PF13646.1 gi|282163812|ref|YP_003356197.1| - 3.3e-22 78.5 13.5 2.5e-09 37.2 1.9 2.4 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.11 gi|282163812|ref|YP_003356197.1| - 3.6e-08 33.1 10.7 0.00082 19.6 1.9 4.6 4 1 0 4 4 4 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|282163812|ref|YP_003356197.1| - 0.00059 20.2 2.9 0.42 11.1 1.9 3.5 3 1 0 3 3 3 1 HEAT-like repeat HEAT PF02985.17 gi|282163812|ref|YP_003356197.1| - 0.055 13.5 2.4 0.47 10.6 0.0 3.3 2 1 1 3 3 3 0 HEAT repeat DUF1736 PF08409.6 gi|282163812|ref|YP_003356197.1| - 0.15 11.5 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1736) Aconitase_B_N PF11791.3 gi|282163812|ref|YP_003356197.1| - 0.2 11.4 1.2 2.1 8.1 0.1 2.5 3 0 0 3 3 3 0 Aconitate B N-terminal domain DUF772 PF05598.6 gi|282163813|ref|YP_003356198.1| - 3.5e-06 26.8 0.1 5e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Transposase domain (DUF772) DUF4024 PF13216.1 gi|282163813|ref|YP_003356198.1| - 2.6 7.9 6.8 1.4 8.7 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4024) Transposase_mut PF00872.13 gi|282163814|ref|YP_003356199.1| - 1.1e-108 363.1 0.0 1.4e-108 362.8 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|282163814|ref|YP_003356199.1| - 8.3e-10 38.7 0.0 2.1e-09 37.3 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_ISL3 PF01610.12 gi|282163814|ref|YP_003356199.1| - 0.0011 18.5 0.1 0.95 8.9 0.2 2.4 1 1 1 2 2 2 2 Transposase DUF772 PF05598.6 gi|282163815|ref|YP_003356200.1| - 0.066 13.1 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|282163816|ref|YP_003356201.1| - 1.6e-16 60.5 1.1 2.1e-16 60.0 0.7 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|282163816|ref|YP_003356201.1| - 1.7e-05 24.8 1.0 2.1e-05 24.5 0.3 1.4 2 0 0 2 2 2 1 Transposase DDE domain RimK PF08443.6 gi|282163817|ref|YP_003356202.1| - 0.12 11.8 0.0 4.6 6.6 0.0 2.2 1 1 1 2 2 2 0 RimK-like ATP-grasp domain PQQ_2 PF13360.1 gi|282163818|ref|YP_003356203.1| - 5.1e-10 39.2 0.0 0.00011 21.7 0.0 4.6 2 1 0 3 3 3 2 PQQ-like domain HTH_24 PF13412.1 gi|282163818|ref|YP_003356203.1| - 1.1e-09 37.5 1.8 1.2e-05 24.6 0.4 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding PQQ PF01011.16 gi|282163818|ref|YP_003356203.1| - 4.8e-09 35.3 5.4 0.01 15.3 0.1 7.0 7 1 1 8 8 8 2 PQQ enzyme repeat HTH_5 PF01022.15 gi|282163818|ref|YP_003356203.1| - 3.8e-07 29.6 0.1 0.017 14.7 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|282163818|ref|YP_003356203.1| - 5.7e-07 29.1 0.1 0.0019 17.8 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.5 gi|282163818|ref|YP_003356203.1| - 4.3e-06 26.2 0.0 0.047 13.2 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|282163818|ref|YP_003356203.1| - 4.9e-06 26.2 0.2 0.0026 17.5 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|282163818|ref|YP_003356203.1| - 6.8e-06 25.6 0.1 0.0023 17.5 0.0 2.3 2 0 0 2 2 2 1 MarR family PQQ_3 PF13570.1 gi|282163818|ref|YP_003356203.1| - 0.00051 20.2 4.7 0.076 13.3 0.0 6.2 8 1 0 8 8 7 1 PQQ-like domain HTH_38 PF13936.1 gi|282163818|ref|YP_003356203.1| - 0.00089 18.7 0.0 0.64 9.6 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|282163818|ref|YP_003356203.1| - 0.0022 17.6 0.0 0.0065 16.1 0.0 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|282163818|ref|YP_003356203.1| - 0.029 13.9 0.1 4.9 6.8 0.0 2.7 2 0 0 2 2 2 0 HTH domain HTH_27 PF13463.1 gi|282163818|ref|YP_003356203.1| - 0.041 14.2 0.1 0.22 11.8 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|282163818|ref|YP_003356203.1| - 0.05 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Mga PF08280.6 gi|282163818|ref|YP_003356203.1| - 0.12 12.1 1.5 0.34 10.6 0.3 2.1 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain Glyoxalase PF00903.20 gi|282163820|ref|YP_003356205.1| - 2.3e-16 59.9 0.3 2.7e-16 59.7 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|282163820|ref|YP_003356205.1| - 5.9e-14 52.5 0.0 7.4e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|282163820|ref|YP_003356205.1| - 0.0026 17.7 0.0 0.0078 16.2 0.0 1.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HAD_2 PF13419.1 gi|282163821|ref|YP_003356206.1| - 2e-23 83.4 0.1 2.4e-23 83.2 0.1 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|282163821|ref|YP_003356206.1| - 2.9e-08 33.2 0.0 5.2e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|282163821|ref|YP_003356206.1| - 6.8e-08 33.1 0.0 0.00011 22.7 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|282163821|ref|YP_003356206.1| - 1e-05 25.8 2.0 0.00051 20.2 1.4 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Abi PF02517.11 gi|282163822|ref|YP_003356207.1| - 2.3e-09 37.2 4.1 2.3e-09 37.2 2.8 3.4 1 1 1 2 2 2 1 CAAX protease self-immunity Caveolin PF01146.12 gi|282163822|ref|YP_003356207.1| - 0.051 13.1 8.1 0.053 13.0 1.6 2.5 2 0 0 2 2 2 0 Caveolin Transposase_mut PF00872.13 gi|282163823|ref|YP_003356208.1| - 1.6e-106 356.1 0.0 1.9e-106 355.8 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|282163823|ref|YP_003356208.1| - 3.4e-15 55.9 0.1 1.3e-14 54.1 0.0 1.9 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|282163823|ref|YP_003356208.1| - 9.7e-07 28.2 0.0 3.2e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.1 gi|282163823|ref|YP_003356208.1| - 3.5e-06 27.0 0.0 0.01 15.7 0.0 2.6 2 0 0 2 2 2 2 DDE domain DDE_Tnp_ISL3 PF01610.12 gi|282163823|ref|YP_003356208.1| - 0.00021 20.9 0.1 0.00057 19.5 0.1 1.8 1 1 0 1 1 1 1 Transposase HTH_29 PF13551.1 gi|282163823|ref|YP_003356208.1| - 0.055 13.6 0.2 0.2 11.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix MFS_1 PF07690.11 gi|282163824|ref|YP_003356209.1| - 6.4e-05 21.8 1.0 6.6e-05 21.7 0.7 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily IncA PF04156.9 gi|282163824|ref|YP_003356209.1| - 0.0001 21.9 0.1 0.00011 21.8 0.1 1.0 1 0 0 1 1 1 1 IncA protein DUF2254 PF10011.4 gi|282163824|ref|YP_003356209.1| - 0.042 12.3 0.4 0.046 12.1 0.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) BT1 PF03092.11 gi|282163824|ref|YP_003356209.1| - 0.07 11.8 0.1 0.073 11.7 0.1 1.0 1 0 0 1 1 1 0 BT1 family DUF4013 PF13197.1 gi|282163824|ref|YP_003356209.1| - 0.088 12.1 10.7 0.11 11.8 7.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) U3_assoc_6 PF08640.6 gi|282163824|ref|YP_003356209.1| - 0.1 12.3 0.2 0.14 11.9 0.2 1.2 1 0 0 1 1 1 0 U3 small nucleolar RNA-associated protein 6 DUF3671 PF12420.3 gi|282163824|ref|YP_003356209.1| - 0.1 12.5 4.3 0.12 12.3 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function UPF0014 PF03649.8 gi|282163824|ref|YP_003356209.1| - 0.32 10.0 3.2 0.39 9.8 2.2 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0014) DUF2207 PF09972.4 gi|282163824|ref|YP_003356209.1| - 1.5 7.3 6.1 1.6 7.1 4.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC2_membrane_3 PF12698.2 gi|282163824|ref|YP_003356209.1| - 5 6.0 11.5 5.9 5.8 8.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein CxxCxxCC PF03692.10 gi|282163825|ref|YP_003356210.1| - 1.5e-08 34.9 5.5 2.1e-08 34.5 3.1 1.8 2 0 0 2 2 2 1 Putative zinc- or iron-chelating domain Response_reg PF00072.19 gi|282163826|ref|YP_003356211.1| - 2.5e-21 75.7 0.3 2.8e-21 75.5 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF651 PF04895.7 gi|282163827|ref|YP_003356212.1| - 0.051 13.2 0.5 0.07 12.7 0.4 1.2 1 0 0 1 1 1 0 Archaeal protein of unknown function (DUF651) RRF_GI PF12614.3 gi|282163827|ref|YP_003356212.1| - 0.064 13.0 0.2 0.2 11.4 0.0 1.7 1 1 1 2 2 2 0 Ribosome recycling factor TFX_C PF14601.1 gi|282163827|ref|YP_003356212.1| - 0.15 11.8 0.5 0.72 9.6 0.1 1.9 1 1 1 2 2 2 0 DNA_binding protein, TFX, C-term PT PF04886.7 gi|282163828|ref|YP_003356213.1| - 2.7 7.4 9.4 2.1 7.7 1.4 3.2 2 1 0 2 2 2 0 PT repeat TP6A_N PF04406.9 gi|282163829|ref|YP_003356214.1| - 9.8e-18 63.5 0.0 1.9e-17 62.6 0.0 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.6 gi|282163830|ref|YP_003356215.1| - 1.9e-64 216.0 0.0 3e-64 215.4 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|282163830|ref|YP_003356215.1| - 1.2e-13 50.7 0.0 2.6e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|282163830|ref|YP_003356215.1| - 1.7e-09 37.4 0.0 3.2e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|282163830|ref|YP_003356215.1| - 0.012 15.3 0.1 0.22 11.3 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain NAD_binding_1 PF00175.16 gi|282163831|ref|YP_003356216.1| - 2.3e-21 76.4 0.0 4.1e-21 75.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|282163831|ref|YP_003356216.1| - 2.6e-11 43.4 0.0 3.8e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_8 PF08022.7 gi|282163831|ref|YP_003356216.1| - 1.7e-06 27.8 0.1 3.1e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 FAD-binding domain NAD_binding_6 PF08030.7 gi|282163831|ref|YP_003356216.1| - 5.2e-05 23.1 0.0 0.0032 17.3 0.0 2.3 1 1 1 2 2 2 1 Ferric reductase NAD binding domain Methyltransf_11 PF08241.7 gi|282163832|ref|YP_003356217.1| - 1.3e-19 70.4 0.0 2.3e-19 69.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282163832|ref|YP_003356217.1| - 9.1e-16 57.8 0.0 1.2e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282163832|ref|YP_003356217.1| - 1.8e-14 54.2 0.0 3.6e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282163832|ref|YP_003356217.1| - 6.5e-12 45.0 0.0 9.2e-12 44.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|282163832|ref|YP_003356217.1| - 8.2e-11 42.1 0.0 1.7e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282163832|ref|YP_003356217.1| - 1.5e-09 37.8 0.1 5e-09 36.1 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|282163832|ref|YP_003356217.1| - 3.3e-09 36.5 0.0 7.5e-09 35.4 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|282163832|ref|YP_003356217.1| - 1e-08 35.5 0.0 1.7e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|282163832|ref|YP_003356217.1| - 1.3e-06 27.6 0.0 2e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_23 PF13489.1 gi|282163832|ref|YP_003356217.1| - 8.6e-06 25.5 0.0 1.3e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|282163832|ref|YP_003356217.1| - 9.7e-06 25.0 0.0 1.5e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|282163832|ref|YP_003356217.1| - 1.4e-05 24.3 0.0 1.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.1 gi|282163832|ref|YP_003356217.1| - 2.1e-05 25.3 0.0 6.6e-05 23.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|282163832|ref|YP_003356217.1| - 0.00066 19.3 0.0 0.00095 18.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_9 PF08003.6 gi|282163832|ref|YP_003356217.1| - 0.001 17.8 0.0 0.0023 16.6 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) UPF0020 PF01170.13 gi|282163832|ref|YP_003356217.1| - 0.0017 17.9 0.0 0.0029 17.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|282163832|ref|YP_003356217.1| - 0.0022 17.7 0.0 0.003 17.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MinC_C PF03775.11 gi|282163832|ref|YP_003356217.1| - 0.025 14.2 0.1 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 Septum formation inhibitor MinC, C-terminal domain Methyltransf_8 PF05148.10 gi|282163832|ref|YP_003356217.1| - 0.028 14.0 0.0 0.22 11.1 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase DUF633 PF04816.7 gi|282163832|ref|YP_003356217.1| - 0.057 12.7 0.0 0.087 12.1 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF633) TehB PF03848.9 gi|282163832|ref|YP_003356217.1| - 0.069 12.3 0.0 0.39 9.8 0.0 1.8 1 1 1 2 2 2 0 Tellurite resistance protein TehB Methyltransf_2 PF00891.13 gi|282163832|ref|YP_003356217.1| - 0.099 11.8 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase ACP_syn_III_C PF08541.5 gi|282163832|ref|YP_003356217.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PrmA PF06325.8 gi|282163832|ref|YP_003356217.1| - 0.16 11.0 0.0 0.22 10.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF3795 PF12675.2 gi|282163833|ref|YP_003356218.1| - 7.1e-07 29.3 13.8 7.1e-07 29.3 9.6 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF3795) DUF2703 PF10865.3 gi|282163833|ref|YP_003356218.1| - 0.011 15.6 1.3 0.015 15.1 0.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF2703) DZR PF12773.2 gi|282163833|ref|YP_003356218.1| - 0.73 9.7 21.5 0.31 10.8 1.9 3.3 1 1 1 2 2 2 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|282163833|ref|YP_003356218.1| - 5.1 7.1 9.9 18 5.4 0.1 3.9 5 0 0 5 5 5 0 zinc-finger Fer4_12 PF13353.1 gi|282163834|ref|YP_003356219.1| - 3.2e-09 37.0 0.0 7.2e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|282163834|ref|YP_003356219.1| - 2.8e-07 30.5 0.0 2.8e-07 30.5 0.0 2.2 3 0 0 3 3 3 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|282163834|ref|YP_003356219.1| - 4.4e-07 30.2 3.3 3.1e-06 27.4 2.1 2.5 2 1 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|282163834|ref|YP_003356219.1| - 0.00045 20.5 0.8 0.0026 18.0 0.1 2.7 2 1 0 2 2 2 1 Iron-sulfur cluster-binding domain DUF4131 PF13567.1 gi|282163835|ref|YP_003356220.1| - 0.0021 17.4 13.9 0.0048 16.3 0.4 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4131) UbiA PF01040.13 gi|282163835|ref|YP_003356220.1| - 0.0022 17.2 6.3 0.003 16.8 4.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family YhhN PF07947.9 gi|282163835|ref|YP_003356220.1| - 0.01 15.2 9.2 0.17 11.2 1.5 2.0 2 0 0 2 2 2 0 YhhN-like protein 7TMR-DISM_7TM PF07695.6 gi|282163835|ref|YP_003356220.1| - 0.014 15.1 9.5 0.13 11.9 0.4 2.0 2 0 0 2 2 2 0 7TM diverse intracellular signalling DUF4231 PF14015.1 gi|282163835|ref|YP_003356220.1| - 0.017 15.1 4.3 1.3 8.9 2.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DoxX_2 PF13564.1 gi|282163835|ref|YP_003356220.1| - 0.034 14.0 9.0 0.08 12.9 0.5 2.1 2 0 0 2 2 2 0 DoxX-like family COPI_assoc PF08507.5 gi|282163835|ref|YP_003356220.1| - 0.036 13.7 1.7 0.036 13.7 1.2 2.1 2 0 0 2 2 2 0 COPI associated protein MtN3_slv PF03083.11 gi|282163835|ref|YP_003356220.1| - 0.12 12.2 0.2 0.12 12.2 0.2 2.7 2 2 2 4 4 4 0 Sugar efflux transporter for intercellular exchange Peptidase_M50B PF13398.1 gi|282163835|ref|YP_003356220.1| - 0.21 10.9 14.7 0.41 9.9 1.2 2.0 2 0 0 2 2 2 0 Peptidase M50B-like EamA PF00892.15 gi|282163835|ref|YP_003356220.1| - 0.22 11.5 17.2 0.97 9.4 4.6 2.1 2 0 0 2 2 2 0 EamA-like transporter family FUSC_2 PF13515.1 gi|282163835|ref|YP_003356220.1| - 0.31 10.9 12.2 1.3 8.9 0.5 2.1 2 0 0 2 2 2 0 Fusaric acid resistance protein-like Tmemb_14 PF03647.8 gi|282163835|ref|YP_003356220.1| - 0.31 11.4 7.7 1.2 9.5 0.6 2.1 2 0 0 2 2 2 0 Transmembrane proteins 14C DUF4395 PF14340.1 gi|282163835|ref|YP_003356220.1| - 0.34 10.9 7.8 0.47 10.5 5.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4395) PetM PF08041.6 gi|282163835|ref|YP_003356220.1| - 0.52 9.8 7.4 4.3 6.8 0.0 3.2 3 0 0 3 3 3 0 PetM family of cytochrome b6f complex subunit 7 DUF1275 PF06912.6 gi|282163835|ref|YP_003356220.1| - 0.52 9.4 8.7 0.029 13.5 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1275) NfeD PF01957.13 gi|282163835|ref|YP_003356220.1| - 0.79 9.8 14.8 0.099 12.7 0.6 2.0 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding DUF4153 PF13687.1 gi|282163835|ref|YP_003356220.1| - 1 8.8 14.2 2.7 7.4 1.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4153) O-antigen_lig PF13425.1 gi|282163835|ref|YP_003356220.1| - 1.1 9.2 18.2 0.92 9.4 1.5 2.1 1 1 1 2 2 2 0 O-antigen ligase like membrane protein CTP_transf_1 PF01148.15 gi|282163835|ref|YP_003356220.1| - 1.3 8.6 10.3 2.4 7.7 0.3 2.0 2 0 0 2 2 2 0 Cytidylyltransferase family TraL PF07178.6 gi|282163835|ref|YP_003356220.1| - 2 8.4 7.0 1.5 8.8 0.4 2.3 2 0 0 2 2 2 0 TraL protein ATG22 PF11700.3 gi|282163835|ref|YP_003356220.1| - 2.3 6.5 12.5 1.1 7.6 1.4 2.0 2 0 0 2 2 2 0 Vacuole effluxer Atg22 like TauE PF01925.14 gi|282163835|ref|YP_003356220.1| - 2.7 7.4 14.1 21 4.4 9.8 1.9 1 1 0 1 1 1 0 Sulfite exporter TauE/SafE AgrB PF04647.10 gi|282163835|ref|YP_003356220.1| - 2.7 7.0 14.3 84 2.1 9.9 2.1 1 1 0 1 1 1 0 Accessory gene regulator B E1-E2_ATPase PF00122.15 gi|282163835|ref|YP_003356220.1| - 3.3 6.6 10.8 1.4 7.9 0.2 2.0 2 0 0 2 2 2 0 E1-E2 ATPase Tic20 PF09685.5 gi|282163835|ref|YP_003356220.1| - 3.5 7.6 18.5 2.4 8.1 1.9 2.1 2 0 0 2 2 2 0 Tic20-like protein PrgI PF12666.2 gi|282163835|ref|YP_003356220.1| - 4.2 7.5 13.9 1.4 9.1 0.7 2.1 2 0 0 2 2 2 0 PrgI family protein OPT PF03169.10 gi|282163835|ref|YP_003356220.1| - 6.3 5.0 14.5 0.44 8.8 0.7 2.0 2 0 0 2 2 2 0 OPT oligopeptide transporter protein DUF2029 PF09594.5 gi|282163835|ref|YP_003356220.1| - 6.8 6.1 15.1 28 4.1 10.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2029) Herpes_LMP1 PF05297.6 gi|282163835|ref|YP_003356220.1| - 9.7 4.9 11.7 5.7 5.7 1.3 2.0 2 0 0 2 2 2 0 Herpesvirus latent membrane protein 1 (LMP1) DUF2975 PF11188.3 gi|282163835|ref|YP_003356220.1| - 9.8 5.8 18.3 0.96 9.1 1.8 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2975) DUF1691 PF07950.6 gi|282163836|ref|YP_003356221.1| - 0.067 13.1 0.7 0.44 10.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1691) PsbL PF02419.12 gi|282163836|ref|YP_003356221.1| - 1.3 8.4 0.0 1.3 8.4 0.0 4.0 5 0 0 5 5 5 0 PsbL protein FAD_binding_3 PF01494.14 gi|282163838|ref|YP_003356223.1| - 1.8e-16 60.1 1.1 8.6e-08 31.6 0.0 3.0 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|282163838|ref|YP_003356223.1| - 1e-14 54.5 1.3 1.5e-14 53.9 0.9 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|282163838|ref|YP_003356223.1| - 8.7e-14 51.2 1.0 2.6e-12 46.3 0.1 2.7 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|282163838|ref|YP_003356223.1| - 7.6e-10 39.0 4.5 1.4e-09 38.1 3.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|282163838|ref|YP_003356223.1| - 3.1e-09 35.8 1.9 1.6e-08 33.4 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.19 gi|282163838|ref|YP_003356223.1| - 8.2e-09 34.8 4.7 6.9e-05 21.9 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|282163838|ref|YP_003356223.1| - 3.1e-07 29.3 1.2 0.0092 14.6 0.2 3.2 2 1 0 3 3 3 2 Tryptophan halogenase Thi4 PF01946.12 gi|282163838|ref|YP_003356223.1| - 3.5e-07 29.5 0.3 9.2e-07 28.1 0.1 1.8 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|282163838|ref|YP_003356223.1| - 6.9e-07 28.4 0.2 8.9e-07 28.1 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|282163838|ref|YP_003356223.1| - 1.3e-06 27.5 3.0 4.5e-05 22.4 0.4 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|282163838|ref|YP_003356223.1| - 1.3e-05 25.1 0.1 4.3e-05 23.4 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|282163838|ref|YP_003356223.1| - 0.00012 22.2 0.1 0.00023 21.2 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|282163838|ref|YP_003356223.1| - 0.0017 18.7 1.2 0.042 14.2 0.1 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase H-K_ATPase_N PF09040.6 gi|282163838|ref|YP_003356223.1| - 0.034 14.2 0.3 0.097 12.8 0.2 1.8 1 0 0 1 1 1 0 Gastric H+/K+-ATPase, N terminal domain ThiF PF00899.16 gi|282163838|ref|YP_003356223.1| - 0.052 13.3 0.1 0.23 11.2 0.0 2.1 2 0 0 2 2 2 0 ThiF family AlaDh_PNT_C PF01262.16 gi|282163838|ref|YP_003356223.1| - 0.2 11.2 2.6 0.63 9.5 0.1 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain PTH2 PF01981.11 gi|282163839|ref|YP_003356224.1| - 1.2e-38 131.3 0.1 1.4e-38 131.1 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF2785 PF10978.3 gi|282163839|ref|YP_003356224.1| - 0.14 11.5 0.0 0.18 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) TruD PF01142.13 gi|282163841|ref|YP_003356226.1| - 2e-103 345.9 0.0 2.3e-103 345.8 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) MTH865 PF07747.6 gi|282163842|ref|YP_003356227.1| - 9.8e-11 41.1 0.0 1.2e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 MTH865-like family TPPK_C PF12555.3 gi|282163843|ref|YP_003356228.1| - 1 9.1 3.9 1.9 8.2 2.7 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal AAA_26 PF13500.1 gi|282163844|ref|YP_003356229.1| - 5.4e-30 104.4 0.0 2.8e-29 102.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain DRTGG PF07085.7 gi|282163844|ref|YP_003356229.1| - 7.7e-30 102.5 0.1 2.6e-29 100.9 0.0 1.9 2 0 0 2 2 2 1 DRTGG domain Hpr_kinase_N PF02603.11 gi|282163844|ref|YP_003356229.1| - 0.0097 15.5 0.1 0.17 11.5 0.0 2.6 3 0 0 3 3 3 1 HPr Serine kinase N terminus DUF99 PF01949.11 gi|282163844|ref|YP_003356229.1| - 0.011 14.8 0.1 2.2 7.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function DUF99 CbiA PF01656.18 gi|282163844|ref|YP_003356229.1| - 0.63 9.4 2.8 12 5.2 0.0 2.4 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain Penicillinase_R PF03965.11 gi|282163845|ref|YP_003356230.1| - 0.0073 16.3 0.6 0.025 14.6 0.1 1.9 1 1 1 2 2 2 1 Penicillinase repressor Spidroin_MaSp PF11260.3 gi|282163845|ref|YP_003356230.1| - 0.093 12.8 0.2 0.14 12.2 0.2 1.2 1 0 0 1 1 1 0 Major ampullate spidroin 1 and 2 Gmad1 PF10647.4 gi|282163845|ref|YP_003356230.1| - 0.11 11.8 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Lipoprotein LpqB beta-propeller domain DUF2797 PF10977.3 gi|282163846|ref|YP_003356231.1| - 7.5e-41 140.2 0.0 1.2e-39 136.3 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) RuvA_N PF01330.16 gi|282163846|ref|YP_003356231.1| - 0.036 13.8 0.0 0.069 12.9 0.0 1.4 1 0 0 1 1 1 0 RuvA N terminal domain PK_C PF02887.11 gi|282163847|ref|YP_003356232.1| - 1.1e-17 63.6 2.3 1.5e-17 63.2 1.6 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain AP_endonuc_2 PF01261.19 gi|282163847|ref|YP_003356232.1| - 0.0015 17.8 0.3 0.011 15.0 0.2 2.2 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel PALP PF00291.20 gi|282163847|ref|YP_003356232.1| - 0.0063 15.7 0.7 0.008 15.4 0.5 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.10 gi|282163847|ref|YP_003356232.1| - 0.016 14.8 0.1 0.026 14.1 0.1 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Radical_SAM PF04055.16 gi|282163847|ref|YP_003356232.1| - 0.048 13.8 0.1 0.13 12.4 0.1 1.6 1 1 0 1 1 1 0 Radical SAM superfamily ASCH PF04266.9 gi|282163848|ref|YP_003356233.1| - 1e-26 93.3 0.0 1.3e-26 93.0 0.0 1.2 1 0 0 1 1 1 1 ASCH domain GAF_2 PF13185.1 gi|282163849|ref|YP_003356234.1| - 3.6e-23 82.6 0.0 1.1e-22 81.1 0.0 1.8 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.21 gi|282163849|ref|YP_003356234.1| - 2.7e-20 72.1 0.0 7.4e-20 70.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|282163849|ref|YP_003356234.1| - 1.3e-17 64.0 0.1 2.6e-14 53.4 0.0 2.8 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|282163849|ref|YP_003356234.1| - 7.9e-17 61.1 0.4 3.4e-11 43.0 0.1 3.0 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|282163849|ref|YP_003356234.1| - 2.9e-14 53.0 0.3 1.4e-10 41.1 0.0 2.7 3 0 0 3 3 3 2 PAS fold GAF PF01590.21 gi|282163849|ref|YP_003356234.1| - 1.7e-11 44.4 0.0 3.6e-11 43.4 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|282163849|ref|YP_003356234.1| - 2.5e-11 43.3 0.0 2.2e-07 30.6 0.0 3.2 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.1 gi|282163849|ref|YP_003356234.1| - 4.3e-08 33.3 0.0 2.3e-07 30.9 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|282163849|ref|YP_003356234.1| - 1.6e-07 30.9 0.1 1.5e-06 27.8 0.0 2.6 3 0 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.1 gi|282163849|ref|YP_003356234.1| - 0.00097 18.9 0.0 0.0074 16.0 0.0 2.5 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282163849|ref|YP_003356234.1| - 0.12 12.1 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 GHKL domain TGT PF01702.13 gi|282163850|ref|YP_003356235.1| - 4.2e-51 173.5 0.0 6.3e-51 172.9 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Dus PF01207.12 gi|282163851|ref|YP_003356236.1| - 9.5e-13 47.6 0.5 1.8e-12 46.7 0.4 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|282163851|ref|YP_003356236.1| - 3.1e-07 29.9 0.3 1e-06 28.2 0.1 1.8 1 1 2 3 3 3 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|282163851|ref|YP_003356236.1| - 5.7e-05 22.1 0.2 8.3e-05 21.6 0.1 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Oxidored_FMN PF00724.15 gi|282163851|ref|YP_003356236.1| - 0.028 13.4 0.0 0.047 12.6 0.0 1.5 1 0 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family DNA_pol3_beta_3 PF02768.10 gi|282163851|ref|YP_003356236.1| - 0.045 13.3 0.0 1.8 8.1 0.0 2.5 3 0 0 3 3 3 0 DNA polymerase III beta subunit, C-terminal domain CitG PF01874.11 gi|282163852|ref|YP_003356237.1| - 1.1e-71 241.2 0.0 1.3e-71 241.0 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|282163853|ref|YP_003356238.1| - 3.2e-44 150.5 0.0 3.7e-44 150.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Pyridox_oxidase PF01243.15 gi|282163853|ref|YP_003356238.1| - 0.0012 18.8 0.0 0.0024 17.8 0.0 1.6 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase DDE_Tnp_1 PF01609.16 gi|282163854|ref|YP_003356239.1| - 2.4e-09 37.0 1.2 3.2e-09 36.6 0.8 1.2 1 0 0 1 1 1 1 Transposase DDE domain Vfa1 PF08432.5 gi|282163854|ref|YP_003356239.1| - 0.13 12.3 7.4 2.2 8.2 3.0 2.2 2 0 0 2 2 2 0 AAA-ATPase Vps4-associated protein 1 LrgB PF04172.11 gi|282163855|ref|YP_003356240.1| - 0.13 11.3 2.2 0.15 11.1 1.5 1.1 1 0 0 1 1 1 0 LrgB-like family DGF-1_5 PF11038.3 gi|282163855|ref|YP_003356240.1| - 0.3 10.2 2.0 0.35 10.0 1.4 1.1 1 0 0 1 1 1 0 Dispersed gene family protein 1 of Trypanosoma cruzi region 5 DUF2929 PF11151.3 gi|282163855|ref|YP_003356240.1| - 1.5 9.0 4.8 4.4 7.4 0.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2929) Gly-zipper_OmpA PF13436.1 gi|282163855|ref|YP_003356240.1| - 2.1 8.0 8.0 12 5.5 3.1 2.1 1 1 1 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain Romo1 PF10247.4 gi|282163855|ref|YP_003356240.1| - 2.4 8.4 14.7 26 5.0 2.6 2.5 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 DUF4349 PF14257.1 gi|282163855|ref|YP_003356240.1| - 2.4 7.2 5.3 0.77 8.9 2.0 1.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) Gly-zipper_Omp PF13488.1 gi|282163855|ref|YP_003356240.1| - 2.8 7.6 15.4 1.4e+02 2.1 10.7 2.7 1 1 0 1 1 1 0 Glycine zipper Rick_17kDa_Anti PF05433.10 gi|282163855|ref|YP_003356240.1| - 7 6.4 14.6 0.97 9.1 4.8 2.9 2 2 0 2 2 2 0 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.1 gi|282163855|ref|YP_003356240.1| - 9.5 5.8 13.9 2.7e+02 1.1 9.7 2.6 1 1 0 1 1 1 0 YMGG-like Gly-zipper DUF116 PF01976.12 gi|282163856|ref|YP_003356241.1| - 2.5e-46 157.0 0.0 3.2e-46 156.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 CcoS PF03597.10 gi|282163856|ref|YP_003356241.1| - 0.028 13.8 5.3 0.075 12.5 3.6 1.8 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type Ribosomal_L40e PF01020.12 gi|282163856|ref|YP_003356241.1| - 0.076 12.6 1.1 0.15 11.6 0.8 1.5 1 0 0 1 1 1 0 Ribosomal L40e family TPP_enzyme_C PF02775.16 gi|282163857|ref|YP_003356242.1| - 1.9e-28 98.9 0.4 3.6e-28 98.0 0.3 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|282163857|ref|YP_003356242.1| - 4.3e-12 46.0 0.4 1.5e-11 44.2 0.3 1.9 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|282163857|ref|YP_003356242.1| - 1.1e-05 24.9 0.1 4.2e-05 23.1 0.0 2.0 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_21 PF14697.1 gi|282163857|ref|YP_003356242.1| - 0.001 18.9 12.7 0.092 12.6 1.5 3.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282163857|ref|YP_003356242.1| - 0.0013 18.5 12.8 0.0013 18.5 8.9 2.1 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282163857|ref|YP_003356242.1| - 0.0024 17.3 16.3 0.018 14.6 2.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Invasin_D3 PF09134.5 gi|282163857|ref|YP_003356242.1| - 0.028 14.2 0.0 6.4 6.7 0.0 2.6 2 0 0 2 2 2 0 Invasin, domain 3 Transketolase_C PF02780.15 gi|282163857|ref|YP_003356242.1| - 0.035 14.0 0.0 1.9 8.4 0.0 2.7 2 0 0 2 2 2 0 Transketolase, C-terminal domain Fer4_6 PF12837.2 gi|282163857|ref|YP_003356242.1| - 0.61 10.0 17.8 0.97 9.4 2.2 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282163857|ref|YP_003356242.1| - 0.64 10.4 18.9 0.46 10.9 9.2 3.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282163857|ref|YP_003356242.1| - 3.1 8.1 19.2 0.2 11.9 9.0 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282163857|ref|YP_003356242.1| - 5.2 7.6 19.0 1 9.9 1.6 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain POR PF01558.13 gi|282163858|ref|YP_003356243.1| - 2.1e-38 131.9 0.2 2.4e-38 131.7 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase AMP-binding_C_2 PF14535.1 gi|282163859|ref|YP_003356244.1| - 8e-22 77.1 0.0 1.5e-21 76.2 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|282163859|ref|YP_003356244.1| - 2.3e-15 55.9 0.0 3.6e-15 55.2 0.0 1.4 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|282163859|ref|YP_003356244.1| - 3.7e-06 25.8 0.0 7e-06 24.9 0.0 1.4 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE PK_C PF02887.11 gi|282163860|ref|YP_003356245.1| - 1.6e-06 27.6 0.1 3.8e-06 26.4 0.1 1.6 1 1 0 1 1 1 1 Pyruvate kinase, alpha/beta domain ACT PF01842.20 gi|282163861|ref|YP_003356246.1| - 1.1e-19 69.5 0.2 1.5e-09 37.1 0.1 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|282163861|ref|YP_003356246.1| - 2.5e-08 34.1 0.4 0.00097 19.4 0.0 2.3 2 1 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|282163861|ref|YP_003356246.1| - 3e-07 29.8 0.4 0.017 14.6 0.1 2.5 2 1 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|282163861|ref|YP_003356246.1| - 0.0015 18.2 0.0 0.14 11.8 0.0 2.3 2 1 0 2 2 2 1 ACT domain Glyoxalase_2 PF12681.2 gi|282163861|ref|YP_003356246.1| - 0.044 14.4 0.1 4.2 8.0 0.0 2.1 1 1 1 2 2 2 0 Glyoxalase-like domain Glyco_hydro_30 PF02055.11 gi|282163861|ref|YP_003356246.1| - 0.11 10.7 0.0 0.12 10.5 0.0 1.1 1 0 0 1 1 1 0 O-Glycosyl hydrolase family 30 AMP-binding_C_2 PF14535.1 gi|282163862|ref|YP_003356247.1| - 3.6e-33 113.4 0.8 9.8e-33 112.0 0.2 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|282163862|ref|YP_003356247.1| - 2.4e-18 65.7 0.4 9.5e-18 63.7 0.3 1.8 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|282163862|ref|YP_003356247.1| - 5.7e-09 35.1 0.0 0.00019 20.2 0.0 2.2 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|282163862|ref|YP_003356247.1| - 0.014 13.9 0.1 2.2 6.6 0.0 2.4 2 1 0 2 2 2 0 GH3 auxin-responsive promoter AMP-binding_C_2 PF14535.1 gi|282163863|ref|YP_003356248.1| - 6.4e-30 103.0 0.2 1.2e-29 102.1 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|282163863|ref|YP_003356248.1| - 3.6e-15 55.2 0.1 2.2e-14 52.7 0.1 1.9 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|282163863|ref|YP_003356248.1| - 0.026 13.1 0.0 0.044 12.4 0.0 1.3 1 0 0 1 1 1 0 Acyl-protein synthetase, LuxE MSA-2c PF12238.3 gi|282163863|ref|YP_003356248.1| - 0.084 12.5 0.3 0.25 11.0 0.1 1.7 2 0 0 2 2 2 0 Merozoite surface antigen 2c Pinin_SDK_N PF04697.8 gi|282163864|ref|YP_003356249.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 pinin/SDK conserved region ABC2_membrane_3 PF12698.2 gi|282163865|ref|YP_003356250.1| - 5.5e-54 183.4 33.3 6.6e-54 183.2 23.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|282163865|ref|YP_003356250.1| - 3.3e-31 108.1 23.5 3.3e-31 108.1 16.3 3.6 3 1 1 4 4 4 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|282163865|ref|YP_003356250.1| - 8.6e-16 57.6 19.9 1.2e-15 57.0 13.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282163865|ref|YP_003356250.1| - 1.6e-10 40.5 20.1 2.7e-10 39.8 13.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|282163865|ref|YP_003356250.1| - 5.3e-05 22.5 10.1 5.3e-05 22.5 7.0 2.4 3 1 0 3 3 3 1 CcmB protein ABC_tran PF00005.22 gi|282163866|ref|YP_003356251.1| - 9.9e-30 103.6 0.0 1.6e-29 102.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163866|ref|YP_003356251.1| - 5.7e-15 56.0 0.1 1.2e-09 38.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282163866|ref|YP_003356251.1| - 3.9e-05 22.8 0.0 0.00066 18.8 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|282163866|ref|YP_003356251.1| - 4.3e-05 23.9 0.0 6.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|282163866|ref|YP_003356251.1| - 0.00042 19.8 0.2 0.85 8.9 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|282163866|ref|YP_003356251.1| - 0.0016 17.9 0.1 0.0033 16.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|282163866|ref|YP_003356251.1| - 0.0064 16.6 0.2 0.085 13.0 0.1 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|282163866|ref|YP_003356251.1| - 0.017 14.3 0.0 0.032 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF4162 PF13732.1 gi|282163866|ref|YP_003356251.1| - 0.034 14.6 0.0 0.069 13.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) MobB PF03205.9 gi|282163866|ref|YP_003356251.1| - 0.059 13.0 0.2 0.21 11.2 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|282163866|ref|YP_003356251.1| - 0.085 12.7 0.1 0.17 11.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|282163866|ref|YP_003356251.1| - 0.096 12.8 0.4 1.2 9.3 0.2 2.3 1 1 1 2 2 2 0 AAA domain Rad17 PF03215.10 gi|282163866|ref|YP_003356251.1| - 0.12 11.0 0.0 0.17 10.4 0.0 1.3 1 1 0 1 1 1 0 Rad17 cell cycle checkpoint protein PadR PF03551.9 gi|282163867|ref|YP_003356252.1| - 1.2e-20 73.0 0.0 1.6e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|282163867|ref|YP_003356252.1| - 0.00031 20.4 0.0 0.0006 19.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|282163867|ref|YP_003356252.1| - 0.00041 19.9 0.1 0.00063 19.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF3116 PF11313.3 gi|282163867|ref|YP_003356252.1| - 0.00048 19.6 0.1 0.0008 18.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) DUF505 PF04458.7 gi|282163867|ref|YP_003356252.1| - 0.0019 16.4 0.1 0.0019 16.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_34 PF13601.1 gi|282163867|ref|YP_003356252.1| - 0.004 17.1 0.0 0.007 16.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain AphA_like PF14557.1 gi|282163867|ref|YP_003356252.1| - 0.012 15.1 0.0 0.014 14.9 0.0 1.1 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator HTH_27 PF13463.1 gi|282163867|ref|YP_003356252.1| - 0.017 15.4 0.0 0.026 14.8 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|282163867|ref|YP_003356252.1| - 0.041 13.6 0.0 0.064 12.9 0.0 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HATPase_c PF02518.21 gi|282163868|ref|YP_003356253.1| - 2.7e-18 65.7 0.0 5.2e-18 64.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|282163868|ref|YP_003356253.1| - 1e-05 25.4 0.0 1.8e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|282163868|ref|YP_003356253.1| - 7.4e-05 22.4 0.0 0.00053 19.7 0.0 2.4 2 1 1 3 3 3 1 PAS domain HATPase_c_5 PF14501.1 gi|282163868|ref|YP_003356253.1| - 0.0055 16.3 0.0 0.015 14.9 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|282163868|ref|YP_003356253.1| - 0.0066 16.2 0.0 0.015 15.1 0.0 1.6 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|282163868|ref|YP_003356253.1| - 0.0085 15.8 0.0 0.073 12.8 0.0 2.3 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|282163868|ref|YP_003356253.1| - 0.068 13.5 0.0 0.45 10.9 0.0 2.3 2 0 0 2 2 2 0 PAS domain HisKA PF00512.20 gi|282163868|ref|YP_003356253.1| - 0.094 12.7 0.0 0.42 10.6 0.0 2.0 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain HTH_24 PF13412.1 gi|282163869|ref|YP_003356254.1| - 8.5e-20 69.8 0.0 4e-09 35.7 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|282163869|ref|YP_003356254.1| - 2.5e-11 43.1 0.0 1.8e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|282163869|ref|YP_003356254.1| - 2.4e-09 36.7 0.0 2.6e-05 23.7 0.0 2.3 2 0 0 2 2 2 2 MarR family MarR PF01047.17 gi|282163869|ref|YP_003356254.1| - 1.3e-06 27.9 0.0 0.015 14.9 0.0 2.3 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|282163869|ref|YP_003356254.1| - 3.8e-06 26.4 0.0 0.0084 15.8 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|282163869|ref|YP_003356254.1| - 1.2e-05 24.7 0.0 0.017 14.6 0.0 2.3 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|282163869|ref|YP_003356254.1| - 0.00051 19.6 0.0 0.047 13.3 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|282163869|ref|YP_003356254.1| - 0.00072 19.5 0.0 0.014 15.4 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|282163869|ref|YP_003356254.1| - 0.0025 17.6 0.0 2.4 8.0 0.0 2.3 2 0 0 2 2 2 2 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.14 gi|282163869|ref|YP_003356254.1| - 0.0037 17.1 0.0 0.45 10.4 0.0 2.5 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|282163869|ref|YP_003356254.1| - 0.0043 16.6 0.0 1 9.0 0.0 2.4 2 0 0 2 2 2 1 HTH domain GerE PF00196.14 gi|282163869|ref|YP_003356254.1| - 0.0093 15.2 0.0 1.3 8.4 0.0 3.1 2 1 1 3 3 3 1 Bacterial regulatory proteins, luxR family HTH_40 PF14493.1 gi|282163869|ref|YP_003356254.1| - 0.018 15.2 0.1 0.26 11.5 0.1 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain RPA_C PF08784.6 gi|282163869|ref|YP_003356254.1| - 0.021 15.2 0.1 2 8.8 0.0 2.3 2 0 0 2 2 2 0 Replication protein A C terminal HTH_23 PF13384.1 gi|282163869|ref|YP_003356254.1| - 0.024 14.3 0.0 0.71 9.6 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_10 PF04967.7 gi|282163869|ref|YP_003356254.1| - 0.13 11.8 0.0 2.6 7.7 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain ABC_tran PF00005.22 gi|282163871|ref|YP_003356256.1| - 4.2e-25 88.6 0.0 6.8e-25 87.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163871|ref|YP_003356256.1| - 9.5e-15 55.3 0.8 2.2e-11 44.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282163871|ref|YP_003356256.1| - 0.0009 18.3 0.0 0.005 15.9 0.0 1.8 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|282163871|ref|YP_003356256.1| - 0.0074 16.6 0.2 0.015 15.6 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|282163871|ref|YP_003356256.1| - 0.0078 15.6 0.3 0.25 10.7 0.2 2.1 2 0 0 2 2 2 1 AAA-like domain SRP54 PF00448.17 gi|282163871|ref|YP_003356256.1| - 0.012 15.0 0.0 0.027 13.9 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.14 gi|282163871|ref|YP_003356256.1| - 0.023 13.9 0.1 4.9 6.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|282163871|ref|YP_003356256.1| - 0.028 13.9 0.1 0.051 13.1 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|282163871|ref|YP_003356256.1| - 0.14 12.3 0.3 0.94 9.6 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane_2 PF12679.2 gi|282163872|ref|YP_003356257.1| - 2.2e-41 141.5 19.9 2.7e-41 141.2 13.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282163872|ref|YP_003356257.1| - 4.5e-18 65.2 28.1 4.5e-18 65.2 19.5 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|282163872|ref|YP_003356257.1| - 0.00034 19.9 19.3 0.00034 19.9 13.4 2.5 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|282163872|ref|YP_003356257.1| - 0.003 16.6 36.3 0.0022 17.0 23.0 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|282163872|ref|YP_003356257.1| - 0.038 13.1 30.2 0.0051 15.9 16.0 2.8 2 1 0 2 2 2 0 ABC-2 type transporter NPCBM_assoc PF10633.4 gi|282163873|ref|YP_003356258.1| - 2.1e-22 78.9 5.3 2.1e-15 56.5 1.6 3.7 3 0 0 3 3 3 3 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.3 gi|282163873|ref|YP_003356258.1| - 4.9e-05 23.4 0.8 0.83 9.7 0.0 3.7 2 1 2 4 4 4 2 IG-like fold at C-terminal of FixG, putative oxidoreductase CARDB PF07705.6 gi|282163873|ref|YP_003356258.1| - 0.00022 21.2 2.8 0.00022 21.2 1.9 4.7 2 2 3 5 5 5 1 CARDB DUF1034 PF06280.7 gi|282163873|ref|YP_003356258.1| - 0.0072 16.7 7.7 5.6 7.4 0.2 4.7 2 2 0 2 2 2 1 Fn3-like domain (DUF1034) Alpha_adaptinC2 PF02883.15 gi|282163873|ref|YP_003356258.1| - 0.048 13.9 0.3 0.22 11.8 0.1 2.4 1 1 0 1 1 1 0 Adaptin C-terminal domain CENP-C_C PF11699.3 gi|282163873|ref|YP_003356258.1| - 0.092 12.7 3.6 0.11 12.4 0.0 2.7 3 0 0 3 3 3 0 Mif2/CENP-C like DUF824 PF05688.6 gi|282163873|ref|YP_003356258.1| - 0.099 12.2 1.7 2.3 7.9 0.1 2.9 2 1 1 3 3 3 0 Salmonella repeat of unknown function (DUF824) DUF11 PF01345.13 gi|282163873|ref|YP_003356258.1| - 1.6 8.8 20.0 0.044 13.8 2.7 4.8 5 1 1 6 6 6 0 Domain of unknown function DUF11 DUF1207 PF06727.6 gi|282163875|ref|YP_003356260.1| - 0.072 11.8 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1207) HA PF03457.9 gi|282163876|ref|YP_003356261.1| - 0.084 12.9 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Helicase associated domain PAGK PF15284.1 gi|282163877|ref|YP_003356262.1| - 0.091 12.5 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Phage-encoded virulence factor COX4 PF02936.9 gi|282163877|ref|YP_003356262.1| - 0.14 11.8 0.2 0.45 10.2 0.1 1.7 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IV WD40 PF00400.27 gi|282163878|ref|YP_003356263.1| - 1.2e-52 174.0 1.0 8.8e-15 53.9 0.0 4.0 4 0 0 4 4 4 4 WD domain, G-beta repeat Nup160 PF11715.3 gi|282163878|ref|YP_003356263.1| - 6.2e-14 51.0 0.8 4.7e-05 21.7 0.0 4.0 1 1 3 4 4 4 4 Nucleoporin Nup120/160 eIF2A PF08662.6 gi|282163878|ref|YP_003356263.1| - 3e-09 36.8 0.0 0.088 12.5 0.0 3.1 1 1 2 3 3 3 3 Eukaryotic translation initiation factor eIF2A PD40 PF07676.7 gi|282163878|ref|YP_003356263.1| - 4.3e-09 35.8 1.8 0.18 11.5 0.0 4.4 4 0 0 4 4 4 3 WD40-like Beta Propeller Repeat PQQ_2 PF13360.1 gi|282163878|ref|YP_003356263.1| - 1.6e-08 34.2 0.6 8.9e-06 25.3 0.0 2.1 1 1 1 2 2 2 2 PQQ-like domain Nbas_N PF15492.1 gi|282163878|ref|YP_003356263.1| - 4.4e-07 29.2 0.1 0.035 13.1 0.0 3.8 1 1 3 4 4 4 3 Neuroblastoma-amplified sequence, N terminal Cytochrom_D1 PF02239.11 gi|282163878|ref|YP_003356263.1| - 1.7e-06 26.5 0.1 0.00016 20.0 0.1 2.4 1 1 1 2 2 2 2 Cytochrome D1 heme domain Arena_nucleocap PF00843.12 gi|282163878|ref|YP_003356263.1| - 5.3e-05 21.3 0.1 0.31 8.8 0.0 3.1 1 1 2 3 3 3 3 Arenavirus nucleocapsid protein Hira PF07569.6 gi|282163878|ref|YP_003356263.1| - 0.00037 19.7 0.0 0.037 13.2 0.0 3.1 1 1 2 3 3 3 1 TUP1-like enhancer of split Proteasome_A_N PF10584.4 gi|282163878|ref|YP_003356263.1| - 0.00057 19.1 9.7 10 5.5 0.0 5.9 6 0 0 6 6 6 0 Proteasome subunit A N-terminal signature PQQ PF01011.16 gi|282163878|ref|YP_003356263.1| - 0.001 18.4 0.7 5.9 6.6 0.0 3.5 3 0 0 3 3 3 1 PQQ enzyme repeat Gmad1 PF10647.4 gi|282163878|ref|YP_003356263.1| - 0.0011 18.3 0.0 0.013 14.8 0.0 2.0 1 1 1 2 2 2 1 Lipoprotein LpqB beta-propeller domain Nucleoporin_N PF08801.6 gi|282163878|ref|YP_003356263.1| - 0.0014 17.4 0.0 0.056 12.1 0.0 2.7 2 1 1 3 3 3 1 Nup133 N terminal like PQQ_3 PF13570.1 gi|282163878|ref|YP_003356263.1| - 0.0039 17.3 0.2 15 6.0 0.0 3.7 4 0 0 4 4 4 0 PQQ-like domain DUF1513 PF07433.6 gi|282163878|ref|YP_003356263.1| - 0.011 14.6 0.0 0.22 10.3 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1513) 7kD_coat PF02495.12 gi|282163878|ref|YP_003356263.1| - 0.013 14.9 0.0 0.37 10.2 0.0 2.5 2 0 0 2 2 2 0 7kD viral coat protein DPPIV_N PF00930.16 gi|282163878|ref|YP_003356263.1| - 0.03 12.9 0.0 10 4.5 0.0 3.2 1 1 1 3 3 3 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Thymidylat_synt PF00303.14 gi|282163879|ref|YP_003356264.1| - 1.8e-18 66.5 0.4 4.5e-18 65.2 0.2 1.4 1 1 1 2 2 2 1 Thymidylate synthase HEAT_2 PF13646.1 gi|282163880|ref|YP_003356265.1| - 1.2e-92 304.3 41.7 3.7e-17 62.3 0.5 5.9 1 1 8 9 9 9 9 HEAT repeats HEAT PF02985.17 gi|282163880|ref|YP_003356265.1| - 1.4e-28 96.3 13.0 0.027 14.5 0.0 10.3 10 1 1 11 11 11 8 HEAT repeat HEAT_EZ PF13513.1 gi|282163880|ref|YP_003356265.1| - 4.2e-26 90.7 24.5 0.00043 20.6 1.5 9.8 7 4 3 10 10 10 9 HEAT-like repeat HEAT_PBS PF03130.11 gi|282163880|ref|YP_003356265.1| - 1.1e-21 75.0 23.8 5e-05 23.3 0.1 9.7 11 0 0 11 11 10 5 PBS lyase HEAT-like repeat Arm PF00514.18 gi|282163880|ref|YP_003356265.1| - 1e-17 63.1 1.6 0.74 9.7 0.0 9.9 7 3 4 11 11 11 4 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|282163880|ref|YP_003356265.1| - 4.1e-09 35.3 0.1 0.0052 15.1 0.0 4.2 1 1 3 4 4 4 3 Adaptin N terminal region Cnd1 PF12717.2 gi|282163880|ref|YP_003356265.1| - 6.2e-08 32.6 0.4 0.38 10.5 0.0 5.5 2 1 3 5 5 5 1 non-SMC mitotic condensation complex subunit 1 TIP120 PF08623.5 gi|282163880|ref|YP_003356265.1| - 1.2e-05 25.0 0.4 0.55 9.8 0.0 3.6 3 1 0 3 3 3 2 TATA-binding protein interacting (TIP20) Aconitase_B_N PF11791.3 gi|282163880|ref|YP_003356265.1| - 1.7e-05 24.7 0.3 0.19 11.5 0.0 4.8 3 2 1 5 5 5 1 Aconitate B N-terminal domain DUF2435 PF10363.4 gi|282163880|ref|YP_003356265.1| - 0.0043 16.9 0.1 0.67 9.8 0.0 3.3 3 0 0 3 3 3 1 Protein of unknown function (DUF2435) Cohesin_HEAT PF12765.2 gi|282163880|ref|YP_003356265.1| - 0.42 10.6 0.0 0.42 10.6 0.0 5.6 7 0 0 7 7 7 0 HEAT repeat associated with sister chromatid cohesion PMSR PF01625.16 gi|282163881|ref|YP_003356266.1| - 3.1e-65 218.7 0.7 3.5e-65 218.6 0.5 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Vsr PF03852.10 gi|282163881|ref|YP_003356266.1| - 0.05 13.2 0.3 0.33 10.6 0.0 2.4 3 0 0 3 3 3 0 DNA mismatch endonuclease Vsr Cortexin PF11057.3 gi|282163882|ref|YP_003356267.1| - 0.0027 17.2 0.3 0.003 17.1 0.2 1.1 1 0 0 1 1 1 1 Cortexin of kidney DUF1469 PF07332.6 gi|282163882|ref|YP_003356267.1| - 3.7 7.2 5.5 4.2 7.1 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Filament PF00038.16 gi|282163883|ref|YP_003356268.1| - 0.0088 15.5 8.3 0.19 11.1 0.3 3.4 1 1 3 4 4 4 2 Intermediate filament protein WEMBL PF05701.6 gi|282163883|ref|YP_003356268.1| - 0.019 13.4 1.0 2.4 6.5 0.1 2.5 2 2 0 2 2 2 0 Weak chloroplast movement under blue light BLOC1_2 PF10046.4 gi|282163883|ref|YP_003356268.1| - 3.5 7.8 11.1 8.4 6.6 0.7 3.8 3 1 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Beta-Casp PF10996.3 gi|282163884|ref|YP_003356269.1| - 2e-19 69.7 0.0 3.6e-19 68.9 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.7 gi|282163884|ref|YP_003356269.1| - 8.6e-12 44.6 0.2 6.5e-11 41.8 0.0 2.3 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B PF00753.22 gi|282163884|ref|YP_003356269.1| - 1.3e-10 41.3 1.1 3e-09 36.7 0.8 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|282163884|ref|YP_003356269.1| - 9.7e-09 35.0 0.0 2.2e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|282163884|ref|YP_003356269.1| - 0.011 15.4 0.0 0.026 14.2 0.0 1.7 1 0 0 1 1 1 0 Beta-lactamase superfamily domain RNA_pol_Rpb5_C PF01191.14 gi|282163885|ref|YP_003356270.1| - 1.1e-29 101.8 0.1 1.2e-29 101.7 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.10 gi|282163886|ref|YP_003356271.1| - 1.4e-54 184.0 0.0 1.7e-54 183.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|282163886|ref|YP_003356271.1| - 1.3e-25 89.9 0.4 2e-25 89.2 0.3 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|282163886|ref|YP_003356271.1| - 2.3e-24 84.9 0.0 4e-24 84.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 DnaI_N PF07319.6 gi|282163886|ref|YP_003356271.1| - 0.062 13.5 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Primosomal protein DnaI N-terminus RNA_pol_Rpb2_6 PF00562.23 gi|282163887|ref|YP_003356272.1| - 1.1e-123 412.7 0.0 1.5e-123 412.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|282163887|ref|YP_003356272.1| - 2.7e-28 98.0 0.1 4.8e-28 97.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|282163887|ref|YP_003356272.1| - 8.3e-25 86.3 1.1 1.8e-24 85.2 0.8 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|282163887|ref|YP_003356272.1| - 3e-12 46.3 0.9 5.6e-12 45.4 0.6 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 zf-ribbon_3 PF13248.1 gi|282163887|ref|YP_003356272.1| - 0.0017 17.5 3.2 0.0044 16.1 2.2 1.7 1 1 1 2 2 2 2 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|282163887|ref|YP_003356272.1| - 0.0043 16.7 0.4 0.0078 15.9 0.3 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|282163887|ref|YP_003356272.1| - 0.0062 16.1 1.3 0.013 15.1 0.9 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|282163887|ref|YP_003356272.1| - 0.015 15.1 0.8 0.029 14.3 0.6 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DZR PF12773.2 gi|282163887|ref|YP_003356272.1| - 0.031 14.1 0.4 0.057 13.2 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|282163887|ref|YP_003356272.1| - 0.1 12.4 0.3 0.21 11.4 0.2 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like RNA_pol_Rpb2_45 PF10385.4 gi|282163887|ref|YP_003356272.1| - 0.13 12.0 0.1 0.34 10.7 0.1 1.6 1 0 0 1 1 1 0 RNA polymerase beta subunit external 1 domain Nudix_N_2 PF14803.1 gi|282163887|ref|YP_003356272.1| - 0.13 11.9 0.1 12 5.6 0.0 2.5 2 0 0 2 2 2 0 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|282163887|ref|YP_003356272.1| - 0.15 11.5 1.1 2.8 7.4 0.1 2.6 2 0 0 2 2 2 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|282163887|ref|YP_003356272.1| - 0.17 11.3 2.4 0.33 10.4 1.7 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|282163887|ref|YP_003356272.1| - 0.19 11.2 1.0 1.5 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|282163887|ref|YP_003356272.1| - 0.23 10.8 5.2 4.5 6.6 0.5 2.5 1 1 0 2 2 2 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|282163887|ref|YP_003356272.1| - 4 7.6 7.6 13 5.9 1.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RNA_pol_Rpb1_1 PF04997.7 gi|282163888|ref|YP_003356273.1| - 8.3e-88 294.8 0.3 1.2e-85 287.7 0.0 2.5 2 1 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|282163888|ref|YP_003356273.1| - 9.3e-68 227.3 0.0 1.5e-67 226.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|282163888|ref|YP_003356273.1| - 4.3e-34 117.5 0.0 7.3e-34 116.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|282163888|ref|YP_003356273.1| - 6e-32 111.0 0.1 1.1e-31 110.0 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|282163888|ref|YP_003356273.1| - 6.2e-32 109.5 0.0 1.3e-31 108.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 zf-ribbon_3 PF13248.1 gi|282163888|ref|YP_003356273.1| - 0.22 10.7 5.9 1.7 7.9 0.1 3.8 5 0 0 5 5 5 0 zinc-ribbon domain RNA_pol_Rpb1_5 PF04998.12 gi|282163889|ref|YP_003356274.1| - 2.2e-47 161.6 2.6 3.7e-47 160.8 1.8 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 NAC PF01849.13 gi|282163889|ref|YP_003356274.1| - 0.018 14.5 0.2 0.07 12.6 0.2 2.0 1 0 0 1 1 1 0 NAC domain DUF3486 PF11985.3 gi|282163889|ref|YP_003356274.1| - 0.029 14.4 0.1 0.064 13.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3486) Nuc_rec_co-act PF08815.5 gi|282163889|ref|YP_003356274.1| - 0.11 12.0 0.0 1 8.9 0.0 2.4 2 0 0 2 2 2 0 Nuclear receptor coactivator Ribosomal_L7Ae PF01248.21 gi|282163890|ref|YP_003356275.1| - 2e-17 62.5 0.0 2.5e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.12 gi|282163891|ref|YP_003356276.1| - 5.2e-23 80.4 3.7 1.4e-14 53.3 0.1 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.1 gi|282163891|ref|YP_003356276.1| - 5.4e-18 64.5 4.6 1.1e-16 60.3 0.7 2.2 2 0 0 2 2 2 2 NusA-like KH domain KH_4 PF13083.1 gi|282163891|ref|YP_003356276.1| - 2e-10 40.1 1.1 1.1e-05 25.0 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|282163891|ref|YP_003356276.1| - 4.9e-07 29.2 4.9 0.00092 18.8 0.8 2.4 2 0 0 2 2 2 2 KH domain ATP-synt PF00231.14 gi|282163891|ref|YP_003356276.1| - 0.0018 17.6 0.6 0.41 9.9 0.1 2.1 1 1 1 2 2 2 2 ATP synthase KH_3 PF13014.1 gi|282163891|ref|YP_003356276.1| - 0.017 14.7 5.9 0.51 10.0 0.2 2.9 2 0 0 2 2 2 0 KH domain XS PF03468.9 gi|282163891|ref|YP_003356276.1| - 0.029 14.3 0.0 0.055 13.4 0.0 1.4 1 1 0 1 1 1 0 XS domain Ribosom_S12_S23 PF00164.20 gi|282163892|ref|YP_003356277.1| - 2.8e-40 136.5 0.0 3.2e-40 136.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|282163893|ref|YP_003356278.1| - 2.2e-40 137.6 0.4 2.6e-40 137.4 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.22 gi|282163894|ref|YP_003356279.1| - 4.3e-58 195.8 0.1 7.3e-58 195.1 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|282163894|ref|YP_003356279.1| - 1.9e-27 95.2 0.1 2.8e-26 91.4 0.0 2.5 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|282163894|ref|YP_003356279.1| - 2.2e-24 85.0 3.5 1.2e-23 82.7 0.6 2.5 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|282163894|ref|YP_003356279.1| - 1.5e-22 79.2 0.0 6.9e-22 77.1 0.0 2.1 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|282163894|ref|YP_003356279.1| - 3.2e-12 46.3 1.0 1.1e-11 44.7 0.7 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|282163894|ref|YP_003356279.1| - 0.00012 22.0 0.0 0.0003 20.7 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.17 gi|282163894|ref|YP_003356279.1| - 0.077 12.3 0.1 0.2 11.0 0.0 1.7 2 0 0 2 2 2 0 Ras family GTP_EFTU PF00009.22 gi|282163895|ref|YP_003356280.1| - 2.8e-58 196.4 0.2 4e-58 195.9 0.2 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|282163895|ref|YP_003356280.1| - 1e-32 112.1 0.5 5.6e-32 109.8 0.1 2.3 2 1 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|282163895|ref|YP_003356280.1| - 1.1e-15 57.5 2.9 1.9e-15 56.7 1.0 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|282163895|ref|YP_003356280.1| - 1.1e-06 28.5 0.0 3.4e-06 26.9 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|282163895|ref|YP_003356280.1| - 1.4e-05 24.6 0.9 3.5e-05 23.3 0.6 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|282163895|ref|YP_003356280.1| - 7.6e-05 23.1 0.0 0.00074 20.0 0.0 2.7 3 1 0 3 3 3 1 Miro-like protein Gtr1_RagA PF04670.7 gi|282163895|ref|YP_003356280.1| - 0.00013 21.2 0.0 0.035 13.2 0.0 2.1 2 0 0 2 2 2 2 Gtr1/RagA G protein conserved region FeoB_N PF02421.13 gi|282163895|ref|YP_003356280.1| - 0.013 14.7 0.1 0.32 10.2 0.0 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B Septin PF00735.13 gi|282163895|ref|YP_003356280.1| - 0.029 13.3 0.0 0.08 11.9 0.0 1.7 2 0 0 2 2 2 0 Septin Ras PF00071.17 gi|282163895|ref|YP_003356280.1| - 0.039 13.3 0.6 0.25 10.7 0.1 2.2 1 1 1 2 2 2 0 Ras family Dynamin_N PF00350.18 gi|282163895|ref|YP_003356280.1| - 0.059 13.1 0.0 4.8 6.9 0.0 2.3 1 1 1 2 2 2 0 Dynamin family Ribosomal_S10 PF00338.17 gi|282163896|ref|YP_003356281.1| - 1.4e-30 104.9 0.0 1.6e-30 104.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e MCR_alpha_N PF02745.10 gi|282163897|ref|YP_003356282.1| - 0.082 12.0 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, N-terminal domain DDE_Tnp_1 PF01609.16 gi|282163898|ref|YP_003356283.1| - 6e-10 39.0 2.0 9.2e-10 38.4 1.4 1.2 1 0 0 1 1 1 1 Transposase DDE domain Vfa1 PF08432.5 gi|282163898|ref|YP_003356283.1| - 0.17 11.9 8.5 7.9 6.4 0.0 2.2 2 0 0 2 2 2 0 AAA-ATPase Vps4-associated protein 1 TPR_1 PF00515.23 gi|282163899|ref|YP_003356284.1| - 2.3e-51 169.3 17.1 1.8e-10 39.9 0.0 7.1 6 1 1 7 7 7 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|282163899|ref|YP_003356284.1| - 1.7e-44 149.2 13.8 4.1e-15 55.1 0.8 4.3 2 2 1 4 4 4 3 TPR repeat TPR_2 PF07719.12 gi|282163899|ref|YP_003356284.1| - 1.9e-44 146.0 14.7 7.8e-08 31.6 0.0 7.1 6 1 1 7 7 7 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282163899|ref|YP_003356284.1| - 7.7e-35 118.8 2.0 4.5e-12 46.3 0.1 5.0 2 1 2 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282163899|ref|YP_003356284.1| - 3.2e-33 113.4 11.5 1.9e-10 40.5 0.0 5.2 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282163899|ref|YP_003356284.1| - 7.2e-31 103.8 10.9 7.3e-07 28.8 0.0 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282163899|ref|YP_003356284.1| - 7.5e-31 103.5 17.7 1.3e-05 24.6 0.0 7.1 5 2 2 7 7 7 6 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282163899|ref|YP_003356284.1| - 4.9e-26 90.8 1.0 4.5e-08 33.3 0.2 4.9 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282163899|ref|YP_003356284.1| - 9.2e-26 87.9 4.4 0.00011 22.5 0.0 7.0 1 1 6 7 7 7 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282163899|ref|YP_003356284.1| - 1.6e-23 82.3 4.2 3.6e-09 36.3 0.1 4.7 1 1 3 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282163899|ref|YP_003356284.1| - 1.3e-22 77.7 5.1 0.02 14.6 0.2 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat Apc3 PF12895.2 gi|282163899|ref|YP_003356284.1| - 1.4e-19 69.9 4.9 2.9e-11 43.3 0.3 3.1 2 1 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|282163899|ref|YP_003356284.1| - 2.5e-16 58.9 7.2 0.052 14.0 0.1 6.9 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282163899|ref|YP_003356284.1| - 5.2e-16 57.9 17.9 0.00044 20.0 0.0 7.0 6 1 1 7 7 7 4 Tetratricopeptide repeat NARP1 PF12569.3 gi|282163899|ref|YP_003356284.1| - 5e-12 45.3 0.1 6.3e-05 21.9 0.0 3.6 1 1 4 5 5 5 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|282163899|ref|YP_003356284.1| - 4.2e-11 42.5 7.7 0.13 12.1 0.1 5.9 4 1 2 6 6 6 3 Fis1 C-terminal tetratricopeptide repeat Coatomer_E PF04733.9 gi|282163899|ref|YP_003356284.1| - 5.2e-10 38.9 0.2 0.00079 18.7 0.0 3.9 2 1 2 4 4 4 2 Coatomer epsilon subunit TPR_15 PF13429.1 gi|282163899|ref|YP_003356284.1| - 3.5e-08 32.8 0.5 0.0042 16.2 0.4 3.5 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|282163899|ref|YP_003356284.1| - 5.6e-05 23.1 5.7 8.4 7.1 0.1 5.6 6 0 0 6 6 5 0 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282163899|ref|YP_003356284.1| - 7.9e-05 22.7 0.3 1.5 9.0 0.0 3.4 3 1 1 4 4 3 2 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|282163899|ref|YP_003356284.1| - 0.00022 20.8 0.1 0.25 10.9 0.0 3.2 3 1 1 4 4 4 1 Plant specific mitochondrial import receptor subunit TOM20 DUF3856 PF12968.2 gi|282163899|ref|YP_003356284.1| - 0.00041 20.1 4.6 0.4 10.4 0.2 5.0 2 1 1 4 4 4 1 Domain of Unknown Function (DUF3856) PPR PF01535.15 gi|282163899|ref|YP_003356284.1| - 0.00052 19.8 9.9 0.35 10.9 0.0 6.2 7 0 0 7 7 6 1 PPR repeat SNAP PF14938.1 gi|282163899|ref|YP_003356284.1| - 0.0042 16.2 4.5 2.4 7.2 1.0 3.5 1 1 2 3 3 3 1 Soluble NSF attachment protein, SNAP MIT PF04212.13 gi|282163899|ref|YP_003356284.1| - 0.024 14.5 11.5 0.72 9.7 0.7 4.9 3 2 1 4 4 4 0 MIT (microtubule interacting and transport) domain FAT PF02259.18 gi|282163899|ref|YP_003356284.1| - 0.024 13.6 0.1 0.44 9.4 0.1 2.5 1 1 0 2 2 2 0 FAT domain Phage_tail_X PF05489.7 gi|282163899|ref|YP_003356284.1| - 0.075 12.5 0.0 1.7 8.2 0.0 2.6 3 0 0 3 3 2 0 Phage Tail Protein X Apc5 PF12862.2 gi|282163899|ref|YP_003356284.1| - 0.095 12.5 0.1 6.4 6.6 0.0 3.6 3 1 0 3 3 3 0 Anaphase-promoting complex subunit 5 PPR_3 PF13812.1 gi|282163899|ref|YP_003356284.1| - 0.11 12.8 0.3 9.9 6.7 0.0 3.4 4 0 0 4 4 2 0 Pentatricopeptide repeat domain Rapsyn_N PF10579.4 gi|282163899|ref|YP_003356284.1| - 0.12 12.1 0.1 0.97 9.2 0.0 2.5 1 1 0 1 1 1 0 Rapsyn N-terminal myristoylation and linker region BTAD PF03704.12 gi|282163899|ref|YP_003356284.1| - 0.23 11.7 7.6 3.2 8.0 0.9 3.2 2 2 0 2 2 2 0 Bacterial transcriptional activator domain TPR_3 PF07720.7 gi|282163899|ref|YP_003356284.1| - 2.3 8.1 11.6 5.7 6.8 0.7 4.7 5 0 0 5 5 5 0 Tetratricopeptide repeat AAL_decarboxy PF03306.8 gi|282163900|ref|YP_003356285.1| - 4.9e-70 235.0 0.0 5.7e-70 234.7 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase Inhibitor_I42 PF09394.5 gi|282163902|ref|YP_003356287.1| - 1.4e-14 54.1 0.2 2e-14 53.6 0.1 1.3 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 MFS_1 PF07690.11 gi|282163905|ref|YP_003356290.1| - 2.8e-35 121.6 28.9 2.1e-34 118.7 17.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|282163905|ref|YP_003356290.1| - 3.9e-09 35.4 34.9 6.4e-08 31.4 10.3 2.5 1 1 1 2 2 2 2 MFS/sugar transport protein UNC-93 PF05978.11 gi|282163905|ref|YP_003356290.1| - 6.2e-05 22.5 4.5 6.2e-05 22.5 3.1 3.3 2 1 1 3 3 3 1 Ion channel regulatory protein UNC-93 MFS_1_like PF12832.2 gi|282163905|ref|YP_003356290.1| - 9.6e-05 22.1 3.1 0.0016 18.2 0.2 3.0 2 0 0 2 2 2 1 MFS_1 like family ABC2_membrane_2 PF12679.2 gi|282163906|ref|YP_003356291.1| - 2.5e-33 115.1 25.4 5.6e-33 113.9 17.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282163906|ref|YP_003356291.1| - 1.6e-21 76.5 34.8 3.2e-21 75.5 24.1 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|282163906|ref|YP_003356291.1| - 1.9e-07 30.4 29.7 1.9e-07 30.4 20.6 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|282163906|ref|YP_003356291.1| - 0.024 13.9 34.1 0.0057 15.9 19.1 2.8 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|282163907|ref|YP_003356292.1| - 3.5e-28 98.6 0.0 5e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163907|ref|YP_003356292.1| - 1.7e-14 54.4 0.3 1e-09 38.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282163907|ref|YP_003356292.1| - 0.00012 21.2 0.1 0.00075 18.6 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain DUF4162 PF13732.1 gi|282163907|ref|YP_003356292.1| - 0.0025 18.2 0.0 0.013 16.0 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|282163907|ref|YP_003356292.1| - 0.011 15.2 0.1 0.45 9.9 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain MMR_HSR1 PF01926.18 gi|282163907|ref|YP_003356292.1| - 0.017 15.0 0.1 0.054 13.4 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.14 gi|282163907|ref|YP_003356292.1| - 0.018 14.2 0.0 3.9 6.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|282163907|ref|YP_003356292.1| - 0.03 14.6 0.1 0.057 13.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|282163907|ref|YP_003356292.1| - 0.03 13.8 0.1 0.056 12.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|282163907|ref|YP_003356292.1| - 0.044 12.9 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 CarboxypepD_reg PF13620.1 gi|282163908|ref|YP_003356293.1| - 4.8e-07 29.7 0.7 4.8e-07 29.7 0.5 2.4 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain fn3_3 PF14686.1 gi|282163908|ref|YP_003356293.1| - 4.6e-05 23.4 0.6 9.4e-05 22.4 0.4 1.5 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II Cna_B PF05738.8 gi|282163908|ref|YP_003356293.1| - 0.0024 17.6 0.1 0.0097 15.6 0.1 2.0 1 0 0 1 1 1 1 Cna protein B-type domain DUF4198 PF10670.4 gi|282163908|ref|YP_003356293.1| - 0.12 12.3 1.2 0.23 11.4 0.1 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4198) TrbC PF04956.8 gi|282163908|ref|YP_003356293.1| - 0.77 9.8 7.1 0.72 9.8 1.0 2.4 2 0 0 2 2 2 0 TrbC/VIRB2 family PfkB PF00294.19 gi|282163909|ref|YP_003356294.1| - 1.2e-37 129.6 0.2 1.5e-37 129.3 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase ABC_tran PF00005.22 gi|282163910|ref|YP_003356295.1| - 3.1e-26 92.2 0.0 9.3e-26 90.7 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|282163910|ref|YP_003356295.1| - 2.6e-15 57.1 0.0 5.6e-13 49.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|282163910|ref|YP_003356295.1| - 0.0063 16.5 0.1 0.027 14.4 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|282163910|ref|YP_003356295.1| - 0.0065 15.5 0.1 0.47 9.4 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|282163910|ref|YP_003356295.1| - 0.0065 16.8 4.0 0.0099 16.2 2.8 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|282163910|ref|YP_003356295.1| - 0.0081 15.6 0.1 0.016 14.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|282163910|ref|YP_003356295.1| - 0.057 13.5 0.1 0.38 10.9 0.0 2.3 1 1 1 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|282163910|ref|YP_003356295.1| - 0.1 12.5 0.0 0.23 11.3 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|282163910|ref|YP_003356295.1| - 0.11 11.6 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|282163910|ref|YP_003356295.1| - 0.12 12.0 0.0 0.42 10.3 0.0 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Flavi_DEAD PF07652.9 gi|282163910|ref|YP_003356295.1| - 0.15 11.7 0.3 0.75 9.5 0.0 2.0 1 1 1 2 2 2 0 Flavivirus DEAD domain ABC2_membrane_2 PF12679.2 gi|282163911|ref|YP_003356296.1| - 9.9e-19 67.2 21.3 1.1e-18 67.0 14.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282163911|ref|YP_003356296.1| - 9.2e-11 41.3 23.1 1.1e-10 41.1 16.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|282163911|ref|YP_003356296.1| - 1.1e-09 37.8 24.0 1.2e-09 37.6 16.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|282163911|ref|YP_003356296.1| - 4e-07 29.5 16.9 6e-07 28.9 11.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein PDR_CDR PF06422.7 gi|282163911|ref|YP_003356296.1| - 0.69 9.6 6.8 1.1 8.9 0.2 3.2 3 0 0 3 3 3 0 CDR ABC transporter FUN14 PF04930.10 gi|282163911|ref|YP_003356296.1| - 3.5 7.9 7.2 0.76 10.0 0.5 2.7 2 1 0 2 2 2 0 FUN14 family ABC_tran PF00005.22 gi|282163912|ref|YP_003356297.1| - 3.9e-25 88.7 0.0 6.9e-25 87.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163912|ref|YP_003356297.1| - 1.5e-14 54.6 0.0 8e-10 39.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282163912|ref|YP_003356297.1| - 0.0017 17.4 0.0 0.2 10.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|282163912|ref|YP_003356297.1| - 0.002 18.5 1.4 0.0039 17.5 0.9 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|282163912|ref|YP_003356297.1| - 0.0021 18.0 0.0 0.0036 17.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|282163912|ref|YP_003356297.1| - 0.0066 15.9 0.1 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.4 gi|282163912|ref|YP_003356297.1| - 0.038 12.6 0.1 0.077 11.6 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.9 gi|282163912|ref|YP_003356297.1| - 0.043 13.5 0.0 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF4440 PF14534.1 gi|282163912|ref|YP_003356297.1| - 0.043 14.0 0.0 0.1 12.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) ArgK PF03308.11 gi|282163912|ref|YP_003356297.1| - 0.063 12.0 0.0 0.12 11.1 0.0 1.4 1 0 0 1 1 1 0 ArgK protein DUF258 PF03193.11 gi|282163912|ref|YP_003356297.1| - 0.067 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|282163912|ref|YP_003356297.1| - 0.094 12.8 0.1 0.47 10.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.2 gi|282163913|ref|YP_003356298.1| - 1.7e-20 73.0 25.4 2.3e-20 72.6 17.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282163913|ref|YP_003356298.1| - 1.5e-08 34.1 29.0 2.5e-08 33.3 20.1 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|282163913|ref|YP_003356298.1| - 3.4e-07 29.6 35.2 4.4e-07 29.2 20.3 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|282163913|ref|YP_003356298.1| - 0.014 14.5 30.5 0.0056 15.8 18.6 2.1 1 1 0 1 1 1 0 ABC-2 type transporter DUF2448 PF10476.4 gi|282163913|ref|YP_003356298.1| - 0.19 11.2 2.3 1.4 8.4 0.0 2.8 2 1 1 3 3 3 0 Protein of unknown function C-terminus (DUF2448) DUF1204 PF06721.6 gi|282163913|ref|YP_003356298.1| - 0.21 10.7 0.0 0.28 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1204) ABC2_membrane_2 PF12679.2 gi|282163914|ref|YP_003356299.1| - 2.2e-17 62.8 24.0 2.9e-17 62.4 16.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282163914|ref|YP_003356299.1| - 6.8e-10 38.4 25.0 9e-10 38.1 17.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Lysis_S PF04971.7 gi|282163914|ref|YP_003356299.1| - 0.13 11.9 0.3 0.13 11.9 0.2 2.8 2 1 0 2 2 2 0 Lysis protein S PDR_CDR PF06422.7 gi|282163914|ref|YP_003356299.1| - 3.9 7.1 6.2 7.7 6.2 0.0 2.8 3 0 0 3 3 3 0 CDR ABC transporter TrmB PF01978.14 gi|282163915|ref|YP_003356300.1| - 1.9e-18 65.9 0.7 3.5e-18 65.0 0.5 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|282163915|ref|YP_003356300.1| - 6.1e-05 22.1 0.0 0.00013 21.0 0.0 1.5 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|282163915|ref|YP_003356300.1| - 9.7e-05 22.2 0.2 0.00025 20.8 0.2 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|282163915|ref|YP_003356300.1| - 9.8e-05 21.9 0.0 0.00018 21.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|282163915|ref|YP_003356300.1| - 0.00015 22.0 0.0 0.00056 20.1 0.0 2.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|282163915|ref|YP_003356300.1| - 0.00098 18.7 0.0 0.0022 17.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|282163915|ref|YP_003356300.1| - 0.0028 17.2 0.0 0.0065 16.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|282163915|ref|YP_003356300.1| - 0.0046 16.7 0.0 0.011 15.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|282163915|ref|YP_003356300.1| - 0.008 15.9 0.0 0.056 13.2 0.0 2.4 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family GntR PF00392.16 gi|282163915|ref|YP_003356300.1| - 0.012 15.0 0.2 0.031 13.7 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|282163915|ref|YP_003356300.1| - 0.02 14.6 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF4423 PF14394.1 gi|282163915|ref|YP_003356300.1| - 0.061 12.8 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_11 PF08279.7 gi|282163915|ref|YP_003356300.1| - 0.074 12.7 0.0 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_10 PF04967.7 gi|282163915|ref|YP_003356300.1| - 0.076 12.6 0.0 0.22 11.1 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain DUF2250 PF10007.4 gi|282163915|ref|YP_003356300.1| - 0.091 12.6 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.1 gi|282163915|ref|YP_003356300.1| - 0.11 11.9 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LCM PF04072.9 gi|282163916|ref|YP_003356301.1| - 2.1e-47 161.0 0.0 2.6e-47 160.7 0.0 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase MarR PF01047.17 gi|282163917|ref|YP_003356302.1| - 4.4e-13 48.7 0.1 1e-12 47.5 0.1 1.7 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|282163917|ref|YP_003356302.1| - 2.7e-09 36.5 0.1 4.6e-09 35.8 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|282163917|ref|YP_003356302.1| - 1.7e-08 34.6 0.4 3.5e-08 33.6 0.1 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|282163917|ref|YP_003356302.1| - 0.00015 21.0 0.3 0.00041 19.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|282163917|ref|YP_003356302.1| - 0.0064 16.1 0.0 0.02 14.5 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|282163917|ref|YP_003356302.1| - 0.019 15.0 0.1 0.24 11.4 0.0 2.2 2 0 0 2 2 2 0 Penicillinase repressor HxlR PF01638.12 gi|282163917|ref|YP_003356302.1| - 0.022 14.3 0.2 0.05 13.2 0.1 1.6 1 1 1 2 2 2 0 HxlR-like helix-turn-helix PadR PF03551.9 gi|282163917|ref|YP_003356302.1| - 0.058 13.1 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_11 PF08279.7 gi|282163917|ref|YP_003356302.1| - 0.07 12.7 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|282163917|ref|YP_003356302.1| - 0.11 12.1 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|282163917|ref|YP_003356302.1| - 0.11 12.4 0.0 0.58 10.1 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain CN_hydrolase PF00795.17 gi|282163918|ref|YP_003356303.1| - 9.6e-21 73.9 0.0 1.4e-20 73.4 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF169 PF02596.10 gi|282163919|ref|YP_003356304.1| - 6.4e-21 74.7 0.0 7.5e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 MCM PF00493.18 gi|282163920|ref|YP_003356305.1| - 5.8e-135 449.3 0.1 7.7e-135 448.9 0.1 1.1 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|282163920|ref|YP_003356305.1| - 5.7e-13 49.4 0.4 2.2e-12 47.5 0.1 2.2 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|282163920|ref|YP_003356305.1| - 2.2e-07 30.2 0.0 2.8e-05 23.3 0.0 2.6 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|282163920|ref|YP_003356305.1| - 5.7e-05 22.8 0.0 0.00012 21.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|282163920|ref|YP_003356305.1| - 0.0019 17.6 0.0 0.0076 15.7 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_3 PF07726.6 gi|282163920|ref|YP_003356305.1| - 0.015 14.8 0.0 0.047 13.2 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Lum_binding PF00677.12 gi|282163920|ref|YP_003356305.1| - 0.082 12.8 0.0 1.1 9.2 0.0 2.6 2 0 0 2 2 2 0 Lumazine binding domain DUF1421 PF07223.6 gi|282163920|ref|YP_003356305.1| - 0.14 11.9 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1421) DUF424 PF04242.8 gi|282163921|ref|YP_003356306.1| - 1.8e-31 108.0 0.4 2e-31 107.9 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) PK_C PF02887.11 gi|282163921|ref|YP_003356306.1| - 0.044 13.3 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 Pyruvate kinase, alpha/beta domain HTH_24 PF13412.1 gi|282163922|ref|YP_003356307.1| - 2.3e-09 36.4 1.7 4.3e-09 35.6 0.5 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|282163922|ref|YP_003356307.1| - 3e-09 36.2 0.1 1.2e-08 34.3 0.0 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|282163922|ref|YP_003356307.1| - 1.7e-08 34.0 0.0 3.3e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_DeoR PF08220.7 gi|282163922|ref|YP_003356307.1| - 0.0012 18.2 0.1 0.0024 17.3 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.6 gi|282163922|ref|YP_003356307.1| - 0.0017 18.0 0.1 0.0035 17.0 0.1 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_11 PF08279.7 gi|282163922|ref|YP_003356307.1| - 0.0028 17.2 0.1 0.0068 16.0 0.1 1.7 1 0 0 1 1 1 1 HTH domain Thioredoxin_6 PF13848.1 gi|282163922|ref|YP_003356307.1| - 0.02 14.6 0.4 0.029 14.1 0.3 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain Tn7_Tnp_TnsA_C PF08721.6 gi|282163922|ref|YP_003356307.1| - 0.029 14.3 0.1 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 TnsA endonuclease C terminal HTH_23 PF13384.1 gi|282163922|ref|YP_003356307.1| - 0.036 13.7 0.2 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_38 PF13936.1 gi|282163922|ref|YP_003356307.1| - 0.075 12.5 0.1 0.34 10.5 0.1 2.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|282163922|ref|YP_003356307.1| - 0.1 12.3 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|282163922|ref|YP_003356307.1| - 0.12 11.5 0.0 0.3 10.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 AAA PF00004.24 gi|282163923|ref|YP_003356308.1| - 2.4e-37 128.1 0.0 1.6e-36 125.4 0.0 2.3 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|282163923|ref|YP_003356308.1| - 4.1e-06 26.5 0.0 1.7e-05 24.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|282163923|ref|YP_003356308.1| - 2e-05 24.7 0.7 0.1 12.7 0.0 3.0 2 1 1 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|282163923|ref|YP_003356308.1| - 3.4e-05 24.6 0.7 0.00023 21.9 0.0 2.8 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|282163923|ref|YP_003356308.1| - 7.4e-05 22.8 0.1 0.018 14.9 0.0 2.7 1 1 1 2 2 2 1 AAA ATPase domain DUF815 PF05673.8 gi|282163923|ref|YP_003356308.1| - 0.001 18.0 1.2 0.012 14.5 0.0 2.4 3 0 0 3 3 3 1 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|282163923|ref|YP_003356308.1| - 0.0032 17.7 1.0 0.015 15.5 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|282163923|ref|YP_003356308.1| - 0.0039 16.6 0.1 0.052 12.9 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|282163923|ref|YP_003356308.1| - 0.004 17.0 0.0 0.012 15.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|282163923|ref|YP_003356308.1| - 0.0047 16.8 0.0 0.01 15.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|282163923|ref|YP_003356308.1| - 0.0049 16.6 0.0 0.013 15.2 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain RuvB_N PF05496.7 gi|282163923|ref|YP_003356308.1| - 0.0086 15.1 0.0 0.02 13.9 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|282163923|ref|YP_003356308.1| - 0.01 15.7 0.0 0.036 13.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|282163923|ref|YP_003356308.1| - 0.012 15.5 0.0 0.032 14.1 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.1 gi|282163923|ref|YP_003356308.1| - 0.015 15.2 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|282163923|ref|YP_003356308.1| - 0.025 13.7 0.0 0.056 12.5 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|282163923|ref|YP_003356308.1| - 0.045 13.3 0.0 0.074 12.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|282163923|ref|YP_003356308.1| - 0.059 12.7 0.0 0.14 11.6 0.0 1.6 1 1 0 1 1 1 0 IstB-like ATP binding protein TIP49 PF06068.8 gi|282163923|ref|YP_003356308.1| - 0.066 11.9 0.0 0.13 10.9 0.0 1.5 1 1 0 1 1 1 0 TIP49 C-terminus HATPase_c_2 PF13581.1 gi|282163923|ref|YP_003356308.1| - 0.069 12.9 0.1 1.1 9.0 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain ResIII PF04851.10 gi|282163923|ref|YP_003356308.1| - 0.088 12.6 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Zeta_toxin PF06414.7 gi|282163923|ref|YP_003356308.1| - 0.092 11.8 0.0 0.19 10.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin SKI PF01202.17 gi|282163923|ref|YP_003356308.1| - 0.096 12.5 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Shikimate kinase Arc_PepC_II PF06847.6 gi|282163924|ref|YP_003356309.1| - 2.4e-19 69.5 0.1 3.9e-19 68.8 0.1 1.3 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|282163924|ref|YP_003356309.1| - 7.4e-10 38.9 14.3 7.4e-10 38.9 9.9 2.1 2 1 1 3 3 3 1 Type IV leader peptidase family 7TM_GPCR_Srab PF10292.4 gi|282163924|ref|YP_003356309.1| - 0.015 13.9 1.3 0.024 13.3 0.9 1.3 1 0 0 1 1 1 0 Serpentine type 7TM GPCR receptor class ab chemoreceptor DUF2537 PF10801.3 gi|282163924|ref|YP_003356309.1| - 0.35 11.0 4.7 0.65 10.1 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2537) DUF4131 PF13567.1 gi|282163924|ref|YP_003356309.1| - 7.2 5.9 9.5 1.9 7.8 0.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Fer4 PF00037.22 gi|282163925|ref|YP_003356310.1| - 4.5e-11 41.8 24.2 2.4e-06 26.8 5.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282163925|ref|YP_003356310.1| - 1.5e-09 37.2 12.9 5.3e-05 22.8 2.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|282163925|ref|YP_003356310.1| - 7.8e-09 35.0 23.4 5e-05 22.9 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282163925|ref|YP_003356310.1| - 5.9e-08 32.3 29.7 1.6e-06 27.7 11.7 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282163925|ref|YP_003356310.1| - 1.3e-06 28.7 44.0 0.0011 19.3 12.8 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282163925|ref|YP_003356310.1| - 3.1e-06 26.9 17.8 1.5e-05 24.7 12.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282163925|ref|YP_003356310.1| - 0.00017 22.2 18.2 0.027 15.1 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|282163925|ref|YP_003356310.1| - 0.0005 20.0 11.7 0.05 13.6 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282163925|ref|YP_003356310.1| - 0.0013 18.9 19.9 0.022 15.0 14.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282163925|ref|YP_003356310.1| - 0.0067 16.9 18.0 0.21 12.1 2.8 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|282163925|ref|YP_003356310.1| - 0.034 14.5 17.6 0.12 12.8 3.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|282163925|ref|YP_003356310.1| - 0.035 14.4 21.6 0.89 10.0 4.9 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|282163925|ref|YP_003356310.1| - 0.087 13.2 16.8 0.25 11.8 1.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282163925|ref|YP_003356310.1| - 0.15 12.4 16.0 0.54 10.6 2.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|282163925|ref|YP_003356310.1| - 1.3 9.7 20.7 1.4 9.6 1.9 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain POR PF01558.13 gi|282163926|ref|YP_003356311.1| - 2e-36 125.5 0.2 2.2e-36 125.3 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.14 gi|282163927|ref|YP_003356312.1| - 1.7e-68 230.5 1.7 2.3e-68 230.1 1.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|282163927|ref|YP_003356312.1| - 5.7e-06 26.2 0.2 3.7e-05 23.6 0.0 2.2 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|282163927|ref|YP_003356312.1| - 0.001 18.5 0.9 0.0015 18.0 0.6 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|282163928|ref|YP_003356313.1| - 6.3e-24 84.2 0.5 2.3e-23 82.4 0.3 1.9 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HtaA PF04213.8 gi|282163928|ref|YP_003356313.1| - 0.047 13.9 0.0 0.069 13.3 0.0 1.2 1 0 0 1 1 1 0 Htaa TPR_17 PF13431.1 gi|282163929|ref|YP_003356314.1| - 3.6e-16 57.9 0.7 3e-06 26.9 0.0 3.1 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282163929|ref|YP_003356314.1| - 2e-12 47.4 0.6 3.6e-05 24.3 0.0 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|282163929|ref|YP_003356314.1| - 3.4e-11 42.6 4.4 3.5e-05 23.3 1.3 2.4 1 1 0 2 2 2 2 TPR repeat TPR_12 PF13424.1 gi|282163929|ref|YP_003356314.1| - 2.1e-10 40.4 5.5 1.3e-08 34.6 1.4 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282163929|ref|YP_003356314.1| - 2.4e-09 36.4 7.4 0.0005 19.7 0.1 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282163929|ref|YP_003356314.1| - 5.4e-09 36.2 0.1 0.00055 20.2 0.1 2.3 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282163929|ref|YP_003356314.1| - 1.4e-08 34.6 0.9 0.0053 17.2 0.0 3.6 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282163929|ref|YP_003356314.1| - 2.4e-05 23.7 8.5 0.00095 18.6 0.5 4.1 4 2 1 5 5 5 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282163929|ref|YP_003356314.1| - 0.00015 21.7 0.2 0.0017 18.4 0.1 2.4 1 1 2 3 3 3 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|282163929|ref|YP_003356314.1| - 0.00017 21.6 1.6 0.0021 18.1 1.1 2.0 1 1 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|282163929|ref|YP_003356314.1| - 0.00046 20.0 1.7 0.038 13.9 0.0 2.7 3 0 0 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|282163929|ref|YP_003356314.1| - 0.0042 15.9 0.2 0.016 14.0 0.1 1.7 1 1 1 2 2 2 1 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|282163929|ref|YP_003356314.1| - 0.0043 16.1 0.1 0.095 11.7 0.0 1.9 1 1 1 2 2 2 1 Tetratricopeptide repeat Mad3_BUB1_I PF08311.7 gi|282163929|ref|YP_003356314.1| - 0.007 16.1 1.7 0.33 10.7 0.0 2.9 2 1 1 3 3 3 1 Mad3/BUB1 homology region 1 TPR_7 PF13176.1 gi|282163929|ref|YP_003356314.1| - 0.036 13.8 0.1 0.036 13.8 0.0 2.9 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282163929|ref|YP_003356314.1| - 0.082 12.7 5.1 2 8.4 0.1 3.7 3 1 1 4 4 4 0 Tetratricopeptide repeat SNAP PF14938.1 gi|282163929|ref|YP_003356314.1| - 0.19 10.8 3.2 0.22 10.6 0.3 1.9 1 1 1 2 2 2 0 Soluble NSF attachment protein, SNAP Glutaredoxin PF00462.19 gi|282163930|ref|YP_003356315.1| - 9.5e-12 44.7 0.0 1.4e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_2 PF13098.1 gi|282163930|ref|YP_003356315.1| - 1.9e-07 31.2 0.2 5.7e-05 23.2 0.2 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain ArsC PF03960.10 gi|282163930|ref|YP_003356315.1| - 4.8e-07 29.8 0.0 0.00018 21.5 0.0 2.0 1 1 1 2 2 2 2 ArsC family DUF836 PF05768.9 gi|282163930|ref|YP_003356315.1| - 1.6e-05 25.0 0.0 1.8e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N_3 PF13417.1 gi|282163930|ref|YP_003356315.1| - 0.018 15.2 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_4 PF13462.1 gi|282163930|ref|YP_003356315.1| - 0.031 14.2 0.2 3.9 7.4 0.1 2.0 1 1 1 2 2 2 0 Thioredoxin Ish1 PF10281.4 gi|282163930|ref|YP_003356315.1| - 0.031 14.3 0.2 0.07 13.2 0.1 1.6 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein Thioredoxin_3 PF13192.1 gi|282163930|ref|YP_003356315.1| - 0.039 13.7 0.0 0.089 12.6 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin domain Thioredoxin PF00085.15 gi|282163930|ref|YP_003356315.1| - 0.06 13.0 0.1 0.082 12.5 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin B3_4 PF03483.12 gi|282163931|ref|YP_003356316.1| - 2.2e-31 108.6 0.0 3.4e-31 108.0 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PfkB PF00294.19 gi|282163932|ref|YP_003356317.1| - 3.3e-55 187.3 0.0 4.2e-55 187.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|282163932|ref|YP_003356317.1| - 1.1e-06 28.0 0.0 2.8e-06 26.7 0.0 1.6 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase BacteriocIIc_cy PF12173.3 gi|282163932|ref|YP_003356317.1| - 0.15 12.0 0.6 0.33 11.0 0.4 1.6 1 0 0 1 1 1 0 Bacteriocin class IIc cyclic gassericin A-like PhosphMutase PF10143.4 gi|282163933|ref|YP_003356318.1| - 2.5e-60 203.0 0.0 3.5e-60 202.5 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|282163933|ref|YP_003356318.1| - 1.4e-45 155.6 0.0 2e-45 155.1 0.0 1.2 1 1 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.15 gi|282163933|ref|YP_003356318.1| - 0.0019 16.9 0.1 0.0032 16.2 0.1 1.3 1 0 0 1 1 1 1 Alkaline phosphatase E1-E2_ATPase PF00122.15 gi|282163934|ref|YP_003356319.1| - 6.7e-63 211.7 5.1 6.7e-63 211.7 3.6 2.5 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.21 gi|282163934|ref|YP_003356319.1| - 2.6e-29 103.2 2.1 2.6e-29 103.2 1.4 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|282163934|ref|YP_003356319.1| - 5.2e-16 59.3 0.1 1.1e-15 58.3 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|282163934|ref|YP_003356319.1| - 1.3e-12 46.9 0.0 3.2e-12 45.7 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|282163934|ref|YP_003356319.1| - 9.6e-05 22.0 0.1 0.00033 20.3 0.1 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|282163934|ref|YP_003356319.1| - 0.044 13.7 0.0 0.089 12.7 0.0 1.5 1 0 0 1 1 1 0 Putative hydrolase of sodium-potassium ATPase alpha subunit GDE_N_bis PF14742.1 gi|282163935|ref|YP_003356320.1| - 4.2e-49 166.5 0.0 5.6e-49 166.1 0.0 1.2 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.9 gi|282163935|ref|YP_003356320.1| - 2.6e-14 52.7 0.0 1.4e-13 50.3 0.0 2.0 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Bac_rhamnosid PF05592.6 gi|282163935|ref|YP_003356320.1| - 0.0074 14.5 0.0 0.011 13.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase PPDK_N PF01326.14 gi|282163936|ref|YP_003356321.1| - 9.3e-92 307.5 0.0 2.6e-91 306.0 0.0 1.6 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|282163936|ref|YP_003356321.1| - 6.5e-50 169.6 0.0 1e-49 169.0 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|282163936|ref|YP_003356321.1| - 6.6e-25 86.4 0.3 1.9e-24 85.0 0.2 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain 2-Hacid_dh_C PF02826.14 gi|282163937|ref|YP_003356322.1| - 1.6e-67 226.0 0.0 2.3e-67 225.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|282163937|ref|YP_003356322.1| - 8.7e-26 89.9 0.0 1e-25 89.7 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|282163937|ref|YP_003356322.1| - 2e-05 24.4 0.1 3.6e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|282163937|ref|YP_003356322.1| - 0.0027 18.0 0.0 0.0078 16.6 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|282163937|ref|YP_003356322.1| - 0.033 14.6 0.0 0.063 13.7 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.7 gi|282163937|ref|YP_003356322.1| - 0.068 12.5 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain PGK PF00162.14 gi|282163938|ref|YP_003356323.1| - 1.6e-152 507.5 0.0 1.8e-152 507.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase PFK PF00365.15 gi|282163939|ref|YP_003356324.1| - 5.6e-96 320.8 5.5 6.5e-96 320.5 3.8 1.0 1 0 0 1 1 1 1 Phosphofructokinase NAD_kinase PF01513.16 gi|282163939|ref|YP_003356324.1| - 0.0026 16.6 1.4 0.0063 15.3 0.1 2.0 2 1 0 2 2 2 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|282163939|ref|YP_003356324.1| - 0.046 13.1 0.1 0.12 11.8 0.0 1.8 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain CBS PF00571.23 gi|282163939|ref|YP_003356324.1| - 0.088 12.6 0.0 11 5.9 0.0 2.7 2 0 0 2 2 2 0 CBS domain DUF1833 PF08875.6 gi|282163939|ref|YP_003356324.1| - 0.11 11.6 0.1 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1833) Gp_dh_C PF02800.15 gi|282163940|ref|YP_003356325.1| - 2.6e-20 72.4 0.0 4.2e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|282163940|ref|YP_003356325.1| - 1.4e-18 67.2 0.3 3.5e-18 66.0 0.2 1.7 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|282163940|ref|YP_003356325.1| - 2.1e-08 34.1 0.5 4.3e-08 33.1 0.3 1.6 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|282163940|ref|YP_003356325.1| - 0.0013 17.9 0.2 0.6 9.2 0.0 2.3 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|282163940|ref|YP_003356325.1| - 0.0059 17.0 0.3 0.028 14.8 0.1 2.1 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|282163940|ref|YP_003356325.1| - 0.054 13.3 0.6 0.11 12.3 0.4 1.6 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Saccharop_dh PF03435.13 gi|282163940|ref|YP_003356325.1| - 0.12 11.3 0.1 0.21 10.5 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase DUF3816 PF12822.2 gi|282163941|ref|YP_003356326.1| - 0.004 17.0 3.1 0.0049 16.7 2.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) Col_cuticle_N PF01484.12 gi|282163941|ref|YP_003356326.1| - 0.064 12.9 0.4 0.88 9.3 0.0 2.1 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain Gly-zipper_YMGG PF13441.1 gi|282163941|ref|YP_003356326.1| - 0.15 11.5 8.2 0.33 10.4 5.7 1.6 1 1 0 1 1 1 0 YMGG-like Gly-zipper DUF3169 PF11368.3 gi|282163941|ref|YP_003356326.1| - 0.32 10.1 5.0 0.33 10.0 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) DUF4199 PF13858.1 gi|282163941|ref|YP_003356326.1| - 0.33 10.8 5.7 0.24 11.2 2.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) Romo1 PF10247.4 gi|282163941|ref|YP_003356326.1| - 0.61 10.3 4.6 0.81 9.9 3.2 1.3 1 0 0 1 1 1 0 Reactive mitochondrial oxygen species modulator 1 Gly-zipper_Omp PF13488.1 gi|282163941|ref|YP_003356326.1| - 1.3 8.7 11.0 3.8 7.2 7.6 1.8 1 1 0 1 1 1 0 Glycine zipper YtxH PF12732.2 gi|282163941|ref|YP_003356326.1| - 3 8.2 5.3 7.5 6.9 3.7 1.6 1 0 0 1 1 1 0 YtxH-like protein Colicin_V PF02674.11 gi|282163941|ref|YP_003356326.1| - 5.6 6.8 10.7 0.81 9.5 4.0 1.8 1 1 1 2 2 2 0 Colicin V production protein DUF308 PF03729.8 gi|282163942|ref|YP_003356327.1| - 2.9e-21 75.2 46.7 5.3e-11 42.3 10.1 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF2561 PF10812.3 gi|282163943|ref|YP_003356328.1| - 0.012 15.2 0.1 0.012 15.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2561) LHC PF00556.15 gi|282163943|ref|YP_003356328.1| - 0.21 11.4 0.3 0.21 11.4 0.2 2.1 2 0 0 2 2 2 0 Antenna complex alpha/beta subunit E1-E2_ATPase PF00122.15 gi|282163944|ref|YP_003356329.1| - 9.8e-66 221.0 6.8 3.7e-64 215.9 0.5 2.6 2 1 0 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.21 gi|282163944|ref|YP_003356329.1| - 2.2e-25 90.3 0.4 4.1e-25 89.4 0.3 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|282163944|ref|YP_003356329.1| - 1.4e-14 53.3 0.0 4.3e-14 51.7 0.0 1.9 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|282163944|ref|YP_003356329.1| - 7.4e-12 45.8 0.0 2.3e-11 44.2 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|282163944|ref|YP_003356329.1| - 0.00012 21.7 0.0 0.00029 20.5 0.1 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase PrsW-protease PF13367.1 gi|282163945|ref|YP_003356330.1| - 5.3e-36 123.6 15.4 5.3e-36 123.6 10.7 2.1 2 0 0 2 2 2 1 Protease prsW family DUF3485 PF11984.3 gi|282163945|ref|YP_003356330.1| - 0.028 13.4 0.1 0.057 12.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3485) CAMP_factor PF07373.6 gi|282163946|ref|YP_003356331.1| - 0.00037 20.0 0.4 0.00055 19.5 0.2 1.2 1 0 0 1 1 1 1 CAMP factor (Cfa) DUF4480 PF13715.1 gi|282163947|ref|YP_003356332.1| - 0.0021 18.0 0.0 0.004 17.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) MarR_2 PF12802.2 gi|282163947|ref|YP_003356332.1| - 0.017 14.7 0.1 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|282163947|ref|YP_003356332.1| - 0.029 14.7 0.1 0.05 13.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|282163947|ref|YP_003356332.1| - 0.081 12.3 0.2 0.34 10.3 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding IncA PF04156.9 gi|282163947|ref|YP_003356332.1| - 0.11 12.0 0.0 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 IncA protein Abi PF02517.11 gi|282163949|ref|YP_003356334.1| - 3.7e-16 59.0 11.3 3.7e-16 59.0 7.8 2.8 1 1 1 2 2 2 1 CAAX protease self-immunity Rhodanese PF00581.15 gi|282163950|ref|YP_003356335.1| - 3.7e-22 78.7 0.0 1.1e-14 54.7 0.0 2.9 2 1 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|282163950|ref|YP_003356335.1| - 5.9e-11 42.3 2.8 1e-10 41.6 1.3 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Sulf_transp PF04143.9 gi|282163951|ref|YP_003356336.1| - 4.2e-08 33.0 5.7 4.2e-08 33.0 4.0 2.9 3 0 0 3 3 3 1 Sulphur transport DUF903 PF06004.7 gi|282163951|ref|YP_003356336.1| - 0.066 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF903) DUF2953 PF11167.3 gi|282163951|ref|YP_003356336.1| - 0.45 10.4 4.6 1.1 9.1 0.0 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF2953) Tim17 PF02466.14 gi|282163951|ref|YP_003356336.1| - 3.4 7.7 10.0 4.7e+02 0.8 7.0 2.8 1 1 0 1 1 1 0 Tim17/Tim22/Tim23/Pmp24 family FtsX PF02687.16 gi|282163951|ref|YP_003356336.1| - 5.5 6.7 12.0 18 5.0 2.4 3.0 1 1 1 2 2 2 0 FtsX-like permease family Sulf_transp PF04143.9 gi|282163952|ref|YP_003356337.1| - 3.3e-08 33.4 5.6 3.3e-08 33.4 3.8 2.5 3 1 0 3 3 3 1 Sulphur transport Cation_efflux PF01545.16 gi|282163952|ref|YP_003356337.1| - 0.0042 16.2 2.3 0.0061 15.6 1.6 1.3 1 1 0 1 1 1 1 Cation efflux family DUF4341 PF14241.1 gi|282163952|ref|YP_003356337.1| - 0.0071 16.0 0.2 0.0071 16.0 0.1 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4341) Peptidase_S8 PF00082.17 gi|282163953|ref|YP_003356338.1| - 1.1e-61 208.4 12.8 1.4e-61 208.1 8.9 1.1 1 0 0 1 1 1 1 Subtilase family Cupredoxin_1 PF13473.1 gi|282163954|ref|YP_003356339.1| - 3.7e-11 42.8 0.0 4.5e-11 42.5 0.0 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|282163954|ref|YP_003356339.1| - 1.1e-09 38.4 0.9 1.9e-07 31.2 0.6 2.1 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Methyltransf_FA PF12248.3 gi|282163954|ref|YP_003356339.1| - 0.058 13.4 0.0 0.07 13.1 0.0 1.1 1 0 0 1 1 1 0 Farnesoic acid 0-methyl transferase TBP PF00352.16 gi|282163955|ref|YP_003356340.1| - 3.9e-26 90.2 0.0 4.7e-26 89.9 0.0 1.1 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) PAS_9 PF13426.1 gi|282163956|ref|YP_003356341.1| - 2.4e-58 194.9 0.3 7.4e-16 58.4 0.0 5.6 6 0 0 6 6 6 5 PAS domain PAS_3 PF08447.6 gi|282163956|ref|YP_003356341.1| - 1.2e-53 179.1 0.3 1.3e-18 66.8 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|282163956|ref|YP_003356341.1| - 3.2e-35 120.5 0.0 1.9e-13 50.4 0.0 6.2 6 1 0 6 6 6 4 PAS fold PAS PF00989.19 gi|282163956|ref|YP_003356341.1| - 1.9e-31 108.1 0.0 4.4e-12 45.7 0.0 6.1 5 1 0 5 5 5 5 PAS fold HATPase_c PF02518.21 gi|282163956|ref|YP_003356341.1| - 1.9e-18 66.1 0.1 5.5e-18 64.7 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|282163956|ref|YP_003356341.1| - 2.8e-16 58.7 0.0 0.00025 20.7 0.0 5.2 5 0 0 5 5 5 3 PAS domain PAS_10 PF13596.1 gi|282163956|ref|YP_003356341.1| - 4.2e-11 43.0 0.1 0.0014 18.8 0.0 4.5 5 1 0 5 5 4 2 PAS domain PAS_7 PF12860.2 gi|282163956|ref|YP_003356341.1| - 1.9e-06 27.8 2.8 2.2 8.2 0.0 6.6 6 1 0 6 6 6 1 PAS fold PAS_11 PF14598.1 gi|282163956|ref|YP_003356341.1| - 4.7e-06 26.5 0.0 0.13 12.2 0.0 4.4 4 0 0 4 4 4 1 PAS domain HATPase_c_2 PF13581.1 gi|282163956|ref|YP_003356341.1| - 2.3e-05 24.1 0.0 0.00012 21.8 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282163956|ref|YP_003356341.1| - 0.013 15.1 0.0 0.06 13.0 0.0 2.1 1 0 0 1 1 1 0 GHKL domain HATPase_c_3 PF13589.1 gi|282163956|ref|YP_003356341.1| - 0.08 12.5 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|282163957|ref|YP_003356342.1| - 4.1e-40 135.7 0.8 2.8e-19 69.0 0.0 2.8 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|282163957|ref|YP_003356342.1| - 7.4e-21 74.4 0.0 9.5e-13 48.4 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|282163957|ref|YP_003356342.1| - 2.5e-19 69.0 0.0 5e-19 68.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|282163957|ref|YP_003356342.1| - 1.2e-16 60.7 0.0 2.9e-12 46.5 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|282163957|ref|YP_003356342.1| - 3.5e-16 59.0 0.0 9.6e-08 31.8 0.0 3.1 3 0 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.1 gi|282163957|ref|YP_003356342.1| - 0.00025 20.8 0.0 0.0023 17.6 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|282163957|ref|YP_003356342.1| - 0.022 14.4 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|282163958|ref|YP_003356343.1| - 4.6e-56 187.6 1.1 7.2e-17 61.6 0.1 4.5 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|282163958|ref|YP_003356343.1| - 4.2e-50 168.2 0.5 8.1e-15 54.5 0.0 4.5 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|282163958|ref|YP_003356343.1| - 6.3e-38 129.1 2.6 5.1e-10 39.3 0.0 4.6 5 0 0 5 5 5 4 PAS fold PAS_8 PF13188.1 gi|282163958|ref|YP_003356343.1| - 6.6e-31 105.1 1.1 3.5e-08 33.0 0.0 4.6 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|282163958|ref|YP_003356343.1| - 3.1e-30 104.1 0.4 8.5e-15 54.6 0.0 4.7 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|282163958|ref|YP_003356343.1| - 3.1e-19 68.7 0.1 6.3e-19 67.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|282163958|ref|YP_003356343.1| - 5.2e-08 32.8 4.4 0.003 17.5 0.1 5.4 5 2 0 5 5 4 2 PAS fold PAS_10 PF13596.1 gi|282163958|ref|YP_003356343.1| - 2.5e-06 27.7 0.5 0.0028 17.8 0.0 3.3 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|282163958|ref|YP_003356343.1| - 4.7e-05 23.1 0.0 0.0001 22.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|282163958|ref|YP_003356343.1| - 0.00019 21.3 0.0 0.13 12.1 0.0 3.8 4 1 0 4 4 4 1 PAS domain HATPase_c_5 PF14501.1 gi|282163958|ref|YP_003356343.1| - 0.0015 18.2 0.0 0.0039 16.8 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|282163958|ref|YP_003356343.1| - 0.035 13.7 0.6 0.11 12.1 0.1 2.0 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Phage_portal_2 PF05136.8 gi|282163960|ref|YP_003356345.1| - 0.017 13.6 0.0 0.024 13.1 0.0 1.1 1 0 0 1 1 1 0 Phage portal protein, lambda family Anoctamin PF04547.7 gi|282163960|ref|YP_003356345.1| - 0.043 12.4 0.0 0.043 12.4 0.0 1.2 1 0 0 1 1 1 0 Calcium-activated chloride channel SNARE_assoc PF09335.6 gi|282163961|ref|YP_003356346.1| - 7.5e-27 93.9 6.2 7.5e-27 93.9 4.3 2.1 2 0 0 2 2 2 1 SNARE associated Golgi protein UPF0220 PF05255.6 gi|282163961|ref|YP_003356346.1| - 0.067 12.4 0.1 0.15 11.3 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0220) tRNA-synt_1e PF01406.14 gi|282163962|ref|YP_003356347.1| - 1.2e-130 435.0 0.0 1.6e-130 434.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|282163962|ref|YP_003356347.1| - 9.5e-20 70.5 0.8 2.5e-10 39.6 0.1 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|282163962|ref|YP_003356347.1| - 7.3e-13 47.3 0.1 3.2e-08 32.0 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.6 gi|282163962|ref|YP_003356347.1| - 1.2e-08 35.1 0.1 3.7e-08 33.4 0.0 1.9 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.13 gi|282163962|ref|YP_003356347.1| - 1.6e-08 33.6 0.0 1.4e-05 23.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|282163962|ref|YP_003356347.1| - 0.00054 18.8 0.1 0.12 11.1 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (R) tRNA-synt_1c PF00749.16 gi|282163962|ref|YP_003356347.1| - 0.12 10.9 1.2 0.29 9.7 0.0 2.1 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain TRAP_beta PF05753.9 gi|282163963|ref|YP_003356348.1| - 0.1 11.7 0.5 2.4 7.3 0.0 2.5 2 1 1 3 3 3 0 Translocon-associated protein beta (TRAPB) DUF2393 PF09624.5 gi|282163963|ref|YP_003356348.1| - 0.9 9.0 5.3 1.7 8.1 2.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) TPR_12 PF13424.1 gi|282163964|ref|YP_003356349.1| - 7.2e-18 64.3 6.3 5.4e-12 45.4 0.5 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|282163964|ref|YP_003356349.1| - 2.9e-08 33.2 6.8 7.1e-05 22.3 0.4 2.8 1 1 2 3 3 3 2 TPR repeat TPR_2 PF07719.12 gi|282163964|ref|YP_003356349.1| - 2.1e-06 27.1 4.9 0.003 17.3 0.0 3.6 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282163964|ref|YP_003356349.1| - 2.6e-05 23.9 0.6 0.001 18.9 0.0 2.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282163964|ref|YP_003356349.1| - 5.1e-05 23.8 3.7 0.02 15.5 0.4 2.6 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282163964|ref|YP_003356349.1| - 0.00011 21.6 2.6 0.43 10.5 0.0 3.1 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282163964|ref|YP_003356349.1| - 0.00025 20.5 0.5 0.0052 16.4 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282163964|ref|YP_003356349.1| - 0.00078 18.9 1.8 0.0055 16.2 0.0 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282163964|ref|YP_003356349.1| - 0.0011 19.4 2.8 8.6 7.3 0.0 3.7 1 1 1 3 3 3 1 Tetratricopeptide repeat SNAP PF14938.1 gi|282163964|ref|YP_003356349.1| - 0.032 13.3 0.6 0.047 12.8 0.4 1.2 1 0 0 1 1 1 0 Soluble NSF attachment protein, SNAP TPR_19 PF14559.1 gi|282163964|ref|YP_003356349.1| - 0.034 14.4 1.2 0.079 13.3 0.3 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|282163964|ref|YP_003356349.1| - 0.1 11.7 0.1 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Coatomer epsilon subunit SHNi-TPR PF10516.4 gi|282163964|ref|YP_003356349.1| - 0.16 11.2 0.8 38 3.6 0.0 3.2 3 0 0 3 3 3 0 SHNi-TPR DUF2951 PF11166.3 gi|282163965|ref|YP_003356350.1| - 0.049 13.4 0.1 0.077 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2951) F420_ligase PF01996.11 gi|282163967|ref|YP_003356352.1| - 1.5e-66 223.7 1.0 1.8e-66 223.4 0.7 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase DUF4130 PF13566.1 gi|282163968|ref|YP_003356353.1| - 2.1e-13 50.1 0.2 3.8e-13 49.3 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 HHH_3 PF12836.2 gi|282163969|ref|YP_003356354.1| - 4.7e-07 29.6 0.0 1e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Radical_SAM PF04055.16 gi|282163969|ref|YP_003356354.1| - 2.8e-06 27.6 1.2 2.8e-05 24.3 0.8 2.5 1 1 0 1 1 1 1 Radical SAM superfamily HHH PF00633.18 gi|282163969|ref|YP_003356354.1| - 3.9e-05 23.0 0.0 7.5e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|282163969|ref|YP_003356354.1| - 0.0011 19.0 0.0 0.0025 17.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain PsbU PF06514.6 gi|282163969|ref|YP_003356354.1| - 0.0035 17.1 0.0 0.01 15.6 0.0 1.7 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_2 PF12826.2 gi|282163969|ref|YP_003356354.1| - 0.046 13.6 0.0 0.078 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif Fer4_12 PF13353.1 gi|282163969|ref|YP_003356354.1| - 0.093 12.8 0.1 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain ABC_tran PF00005.22 gi|282163970|ref|YP_003356355.1| - 5.5e-29 101.2 0.0 8.6e-29 100.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282163970|ref|YP_003356355.1| - 1.6e-14 54.5 0.0 1.3e-12 48.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|282163970|ref|YP_003356355.1| - 0.00011 22.5 0.1 0.00018 21.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|282163970|ref|YP_003356355.1| - 0.00061 19.6 0.0 0.007 16.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|282163970|ref|YP_003356355.1| - 0.0019 17.3 0.0 0.37 9.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|282163970|ref|YP_003356355.1| - 0.0033 17.4 0.0 0.0059 16.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|282163970|ref|YP_003356355.1| - 0.0067 15.9 0.1 0.015 14.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|282163970|ref|YP_003356355.1| - 0.025 13.8 0.0 0.22 10.7 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|282163970|ref|YP_003356355.1| - 0.034 13.3 0.0 0.056 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|282163970|ref|YP_003356355.1| - 0.051 12.0 0.0 0.073 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|282163970|ref|YP_003356355.1| - 0.084 13.0 0.1 0.19 11.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|282163970|ref|YP_003356355.1| - 0.09 13.6 0.0 0.17 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|282163970|ref|YP_003356355.1| - 0.094 12.2 0.1 0.3 10.6 0.0 1.8 2 1 1 3 3 3 0 AAA domain Sigma54_activ_2 PF14532.1 gi|282163970|ref|YP_003356355.1| - 0.17 11.9 0.0 5.5 7.0 0.0 2.4 2 1 0 2 2 2 0 Sigma-54 interaction domain ABC2_membrane_4 PF12730.2 gi|282163971|ref|YP_003356356.1| - 3e-10 39.6 26.1 3e-10 39.6 18.1 3.5 2 2 1 3 3 3 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|282163971|ref|YP_003356356.1| - 0.00023 20.3 16.3 0.00023 20.3 11.3 2.9 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|282163971|ref|YP_003356356.1| - 6.6 5.9 30.0 0.012 14.9 6.0 3.2 3 1 0 3 3 3 0 ABC-2 family transporter protein BofA PF07441.6 gi|282163972|ref|YP_003356357.1| - 1.1e-05 25.2 19.1 1.6e-05 24.7 13.2 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA DUF2663 PF10864.3 gi|282163972|ref|YP_003356357.1| - 1.8 8.7 5.4 0.31 11.2 1.5 1.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2663) DUF1212 PF06738.7 gi|282163972|ref|YP_003356357.1| - 9.9 5.5 10.2 3.7 6.9 5.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1212) DNA_pol_B PF00136.16 gi|282163973|ref|YP_003356358.1| - 1.5e-89 300.9 0.1 2.1e-89 300.4 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|282163973|ref|YP_003356358.1| - 5.7e-35 120.7 0.0 1.5e-34 119.3 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|282163973|ref|YP_003356358.1| - 1.4e-12 47.7 0.0 2.5e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|282163973|ref|YP_003356358.1| - 8.1e-09 35.3 0.0 1.4e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Fst_toxin PF13955.1 gi|282163974|ref|YP_003356359.1| - 0.1 12.2 0.2 0.1 12.2 0.1 3.6 3 0 0 3 3 3 0 Toxin Fst, type I toxin-antitoxin system ABC_tran PF00005.22 gi|282163975|ref|YP_003356360.1| - 7.7e-55 184.9 0.0 1.7e-26 93.1 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|282163975|ref|YP_003356360.1| - 4.2e-22 79.4 0.5 1.3e-07 31.9 0.1 4.1 2 2 0 3 3 3 3 AAA domain SMC_N PF02463.14 gi|282163975|ref|YP_003356360.1| - 1.1e-13 50.9 0.5 5.9e-07 28.9 0.0 3.2 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|282163975|ref|YP_003356360.1| - 9.7e-10 39.0 1.5 7.7e-05 23.1 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|282163975|ref|YP_003356360.1| - 1.3e-09 37.4 0.7 0.0012 18.3 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|282163975|ref|YP_003356360.1| - 3.9e-08 33.1 0.2 0.007 16.2 0.0 3.2 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|282163975|ref|YP_003356360.1| - 7.4e-08 32.5 0.2 0.0014 18.6 0.2 2.9 2 1 0 2 2 2 2 AAA ATPase domain T2SE PF00437.15 gi|282163975|ref|YP_003356360.1| - 1.7e-07 30.4 0.3 0.027 13.3 0.0 3.2 3 0 0 3 3 3 2 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|282163975|ref|YP_003356360.1| - 3.1e-07 30.0 0.1 0.01 15.3 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|282163975|ref|YP_003356360.1| - 8e-07 28.6 0.8 0.024 14.0 0.0 3.3 2 1 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|282163975|ref|YP_003356360.1| - 1.2e-06 28.1 0.0 0.0079 15.9 0.0 2.8 2 0 0 2 2 2 2 Part of AAA domain UPF0079 PF02367.12 gi|282163975|ref|YP_003356360.1| - 2.9e-06 26.9 0.9 0.0089 15.6 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|282163975|ref|YP_003356360.1| - 3.1e-06 27.0 0.0 0.032 13.9 0.0 3.2 3 0 0 3 3 3 1 Archaeal ATPase AAA_22 PF13401.1 gi|282163975|ref|YP_003356360.1| - 3.5e-06 27.1 3.3 0.021 14.9 0.0 3.4 3 1 0 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|282163975|ref|YP_003356360.1| - 4.6e-06 27.4 2.1 0.011 16.5 0.0 3.0 3 1 0 3 3 2 2 AAA domain AAA_10 PF12846.2 gi|282163975|ref|YP_003356360.1| - 5.4e-06 26.0 0.1 0.08 12.3 0.0 3.5 4 0 0 4 4 4 2 AAA-like domain MobB PF03205.9 gi|282163975|ref|YP_003356360.1| - 6.9e-06 25.8 0.2 0.011 15.3 0.0 2.7 3 0 0 3 3 2 2 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|282163975|ref|YP_003356360.1| - 7.5e-06 25.7 0.7 0.089 12.4 0.0 3.1 3 0 0 3 3 3 2 NTPase NB-ARC PF00931.17 gi|282163975|ref|YP_003356360.1| - 7.5e-06 25.0 0.6 0.031 13.1 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain AAA_14 PF13173.1 gi|282163975|ref|YP_003356360.1| - 1e-05 25.4 0.0 0.13 12.1 0.0 3.4 3 0 0 3 3 3 1 AAA domain NACHT PF05729.7 gi|282163975|ref|YP_003356360.1| - 1.9e-05 24.3 0.5 0.034 13.8 0.0 2.4 2 0 0 2 2 2 2 NACHT domain Zeta_toxin PF06414.7 gi|282163975|ref|YP_003356360.1| - 5.6e-05 22.3 0.1 0.17 10.9 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin AAA_33 PF13671.1 gi|282163975|ref|YP_003356360.1| - 5.9e-05 22.9 0.1 0.4 10.5 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|282163975|ref|YP_003356360.1| - 7.5e-05 22.4 0.6 0.46 10.0 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.1 gi|282163975|ref|YP_003356360.1| - 7.5e-05 23.0 1.6 0.068 13.4 0.0 3.0 4 0 0 4 4 2 1 AAA domain AAA_15 PF13175.1 gi|282163975|ref|YP_003356360.1| - 0.00013 21.1 0.2 0.31 10.0 0.0 3.1 3 0 0 3 3 3 1 AAA ATPase domain ATP-synt_ab PF00006.20 gi|282163975|ref|YP_003356360.1| - 0.00015 21.3 1.6 0.74 9.2 0.2 3.1 2 1 1 3 3 3 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.1 gi|282163975|ref|YP_003356360.1| - 0.00056 19.9 0.3 1.4 8.8 0.2 2.4 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|282163975|ref|YP_003356360.1| - 0.00089 18.4 0.1 0.099 11.8 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF258 PRK PF00485.13 gi|282163975|ref|YP_003356360.1| - 0.0012 18.4 0.0 0.31 10.5 0.0 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family Miro PF08477.8 gi|282163975|ref|YP_003356360.1| - 0.0012 19.2 0.0 0.61 10.5 0.0 2.5 2 0 0 2 2 2 1 Miro-like protein cobW PF02492.14 gi|282163975|ref|YP_003356360.1| - 0.0017 17.8 0.7 0.63 9.4 0.0 2.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|282163975|ref|YP_003356360.1| - 0.0018 18.4 0.5 3.1 7.9 0.0 3.1 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|282163975|ref|YP_003356360.1| - 0.002 17.7 0.2 0.23 11.1 0.0 2.5 2 0 0 2 2 2 1 Adenylylsulphate kinase SRP54 PF00448.17 gi|282163975|ref|YP_003356360.1| - 0.0028 17.1 0.8 0.14 11.6 0.1 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Sigma54_activat PF00158.21 gi|282163975|ref|YP_003356360.1| - 0.0037 16.7 0.1 0.25 10.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain MMR_HSR1 PF01926.18 gi|282163975|ref|YP_003356360.1| - 0.0049 16.8 0.4 1.5 8.8 0.0 2.6 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_13 PF13166.1 gi|282163975|ref|YP_003356360.1| - 0.005 15.3 0.1 1.7 6.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|282163975|ref|YP_003356360.1| - 0.0051 16.9 0.0 0.78 9.9 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_24 PF13479.1 gi|282163975|ref|YP_003356360.1| - 0.0073 15.9 0.5 3.4 7.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.7 gi|282163975|ref|YP_003356360.1| - 0.011 15.0 0.1 0.81 8.9 0.0 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein DUF2075 PF09848.4 gi|282163975|ref|YP_003356360.1| - 0.013 14.4 0.2 0.56 9.1 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) G-alpha PF00503.15 gi|282163975|ref|YP_003356360.1| - 0.017 13.8 0.0 0.15 10.7 0.0 2.0 2 0 0 2 2 2 0 G-protein alpha subunit DUF87 PF01935.12 gi|282163975|ref|YP_003356360.1| - 0.018 14.8 2.7 0.38 10.5 0.1 2.7 3 0 0 3 3 2 0 Domain of unknown function DUF87 PduV-EutP PF10662.4 gi|282163975|ref|YP_003356360.1| - 0.025 14.0 1.1 0.92 8.9 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation KaiC PF06745.8 gi|282163975|ref|YP_003356360.1| - 0.033 13.2 4.1 0.26 10.3 0.1 2.7 3 0 0 3 3 2 0 KaiC PIF1 PF05970.9 gi|282163975|ref|YP_003356360.1| - 0.034 13.0 0.1 1.9 7.3 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase CbiA PF01656.18 gi|282163975|ref|YP_003356360.1| - 0.043 13.2 0.7 1.5 8.1 0.0 2.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain BCA_ABC_TP_C PF12399.3 gi|282163975|ref|YP_003356360.1| - 0.067 12.8 0.0 8.9 6.1 0.0 2.6 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter AAA_5 PF07728.9 gi|282163975|ref|YP_003356360.1| - 0.071 12.8 0.1 11 5.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|282163975|ref|YP_003356360.1| - 0.11 11.9 0.6 1.1 8.5 0.0 2.7 3 0 0 3 3 3 0 IstB-like ATP binding protein PEPCK_ATP PF01293.15 gi|282163975|ref|YP_003356360.1| - 0.11 10.9 0.5 0.24 9.8 0.0 1.6 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxykinase Mg_chelatase PF01078.16 gi|282163975|ref|YP_003356360.1| - 0.12 11.4 0.2 16 4.5 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI TrwB_AAD_bind PF10412.4 gi|282163975|ref|YP_003356360.1| - 0.18 10.3 0.7 4.9 5.6 0.1 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ABC_ATPase PF09818.4 gi|282163975|ref|YP_003356360.1| - 0.43 9.1 6.9 3.7 6.0 0.1 3.8 4 0 0 4 4 4 0 Predicted ATPase of the ABC class CbiQ PF02361.11 gi|282163976|ref|YP_003356361.1| - 4.9e-30 104.7 8.9 6.4e-30 104.3 6.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein PAS_9 PF13426.1 gi|282163977|ref|YP_003356362.1| - 5.4e-26 90.9 0.0 5.5e-17 62.0 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|282163977|ref|YP_003356362.1| - 1.7e-24 85.7 0.2 2.2e-16 59.6 0.0 3.9 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|282163977|ref|YP_003356362.1| - 1.2e-16 60.3 0.0 2.6e-16 59.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|282163977|ref|YP_003356362.1| - 1.2e-15 57.4 0.0 7.8e-10 38.7 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|282163977|ref|YP_003356362.1| - 1.1e-14 54.2 0.0 1.3e-11 44.4 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|282163977|ref|YP_003356362.1| - 5.4e-09 35.5 0.0 0.00038 20.2 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.1 gi|282163977|ref|YP_003356362.1| - 0.00015 22.0 0.1 0.19 11.9 0.0 3.9 4 1 1 5 5 4 1 PAS domain HATPase_c_2 PF13581.1 gi|282163977|ref|YP_003356362.1| - 0.00089 19.0 0.0 0.0023 17.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282163977|ref|YP_003356362.1| - 0.019 14.6 0.0 0.098 12.3 0.0 2.1 2 0 0 2 2 2 0 GHKL domain YabP PF07873.6 gi|282163977|ref|YP_003356362.1| - 0.023 14.2 0.1 0.85 9.2 0.1 2.4 2 0 0 2 2 2 0 YabP family HATPase_c_3 PF13589.1 gi|282163977|ref|YP_003356362.1| - 0.026 14.1 0.0 0.064 12.9 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|282163977|ref|YP_003356362.1| - 0.027 14.4 0.0 0.086 12.7 0.0 1.8 1 1 0 1 1 1 0 PAS domain Toprim_N PF08275.6 gi|282163977|ref|YP_003356362.1| - 0.04 13.8 0.0 0.19 11.6 0.0 2.0 2 0 0 2 2 2 0 DNA primase catalytic core, N-terminal domain CHD5 PF04420.9 gi|282163977|ref|YP_003356362.1| - 0.2 11.3 0.2 11 5.6 0.0 2.3 2 0 0 2 2 2 0 CHD5-like protein Rho_Binding PF08912.6 gi|282163977|ref|YP_003356362.1| - 3.7 7.9 8.1 1.7 9.0 1.0 2.7 3 0 0 3 3 2 0 Rho Binding E1-E2_ATPase PF00122.15 gi|282163978|ref|YP_003356363.1| - 7.1e-53 179.0 2.8 4.7e-52 176.3 1.1 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|282163978|ref|YP_003356363.1| - 2.4e-47 162.1 0.8 5.2e-47 161.0 0.5 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|282163978|ref|YP_003356363.1| - 4.8e-19 69.2 0.0 1.1e-18 68.0 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|282163978|ref|YP_003356363.1| - 2.5e-07 30.5 0.3 0.0019 17.8 0.2 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|282163978|ref|YP_003356363.1| - 0.003 17.8 0.2 0.0064 16.7 0.0 1.6 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF1529 PF07485.6 gi|282163979|ref|YP_003356364.1| - 6.3e-76 251.9 0.0 1.3e-40 137.9 0.0 2.0 2 0 0 2 2 2 2 Domain of Unknown Function (DUF1259) DUF1529 PF07485.6 gi|282163980|ref|YP_003356365.1| - 5.6e-67 223.1 0.0 5.2e-39 132.7 0.0 2.1 2 0 0 2 2 2 2 Domain of Unknown Function (DUF1259) Glyco_hydro_3 PF00933.16 gi|282163981|ref|YP_003356366.1| - 5.5e-87 291.5 0.0 8e-87 290.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|282163981|ref|YP_003356366.1| - 9e-61 205.2 0.4 1.8e-59 200.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|282163981|ref|YP_003356366.1| - 4.1e-24 84.3 0.0 7.7e-24 83.4 0.0 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain PFK PF00365.15 gi|282163982|ref|YP_003356367.1| - 2.6e-98 328.4 6.8 2.9e-98 328.2 4.7 1.0 1 0 0 1 1 1 1 Phosphofructokinase NAD_kinase PF01513.16 gi|282163982|ref|YP_003356367.1| - 6.1e-05 21.9 0.3 8.5e-05 21.4 0.2 1.4 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|282163982|ref|YP_003356367.1| - 0.033 13.6 0.1 0.07 12.5 0.1 1.6 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain MTD PF01993.13 gi|282163983|ref|YP_003356368.1| - 4.3e-110 367.1 2.7 4.9e-110 366.9 1.9 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Pyridox_ox_2 PF12900.2 gi|282163984|ref|YP_003356369.1| - 7.7e-19 67.9 0.0 9.8e-19 67.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|282163984|ref|YP_003356369.1| - 1.6e-06 28.0 0.0 2.2e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Cbl_N PF02262.11 gi|282163984|ref|YP_003356369.1| - 0.029 14.0 0.0 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 CBL proto-oncogene N-terminal domain 1 TrkA_N PF02254.13 gi|282163985|ref|YP_003356370.1| - 9.9e-47 157.7 5.6 9e-25 86.9 0.1 2.3 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|282163985|ref|YP_003356370.1| - 7.3e-20 70.3 0.0 4.2e-09 35.8 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|282163985|ref|YP_003356370.1| - 1.1e-15 57.0 11.9 2.6e-15 55.9 8.2 1.5 1 0 0 1 1 1 1 Ion channel XdhC_C PF13478.1 gi|282163985|ref|YP_003356370.1| - 0.0001 22.6 0.3 0.48 10.7 0.1 2.3 2 0 0 2 2 2 2 XdhC Rossmann domain Ion_trans PF00520.26 gi|282163985|ref|YP_003356370.1| - 0.00018 20.7 7.6 0.0003 20.0 5.3 1.3 1 0 0 1 1 1 1 Ion transport protein NAD_binding_7 PF13241.1 gi|282163985|ref|YP_003356370.1| - 0.0014 18.8 0.6 0.26 11.5 0.0 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding AdoHcyase_NAD PF00670.16 gi|282163985|ref|YP_003356370.1| - 0.0095 15.7 1.5 0.033 14.0 0.0 2.6 3 0 0 3 3 3 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|282163985|ref|YP_003356370.1| - 0.012 14.7 0.0 0.028 13.5 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PsiE PF06146.7 gi|282163986|ref|YP_003356371.1| - 3.9e-06 26.9 10.6 3.9e-06 26.9 7.4 1.7 2 0 0 2 2 2 1 Phosphate-starvation-inducible E MerC PF03203.9 gi|282163986|ref|YP_003356371.1| - 7.3 6.9 13.0 1.1 9.6 5.3 2.0 1 1 1 2 2 2 0 MerC mercury resistance protein PsiE PF06146.7 gi|282163987|ref|YP_003356372.1| - 1.9e-10 40.8 7.4 1.9e-10 40.8 5.1 2.1 1 1 1 2 2 2 1 Phosphate-starvation-inducible E DUF3318 PF11780.3 gi|282163987|ref|YP_003356372.1| - 0.17 11.4 0.7 0.24 10.9 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3318) DDT PF02791.12 gi|282163987|ref|YP_003356372.1| - 0.38 10.5 2.4 11 5.9 1.3 3.0 2 1 0 2 2 2 0 DDT domain PseudoU_synth_1 PF01416.15 gi|282163988|ref|YP_003356373.1| - 7.6e-32 109.8 0.0 2.3e-20 72.9 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase zinc_ribbon_6 PF14599.1 gi|282163989|ref|YP_003356374.1| - 0.0084 15.8 5.1 0.41 10.4 4.2 2.0 1 1 1 2 2 2 1 Zinc-ribbon C1_1 PF00130.17 gi|282163989|ref|YP_003356374.1| - 0.026 14.2 1.6 0.031 13.9 1.1 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) ArfGap PF01412.13 gi|282163989|ref|YP_003356374.1| - 0.072 12.8 0.3 0.086 12.6 0.2 1.1 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf Metallothio_Euk PF12749.2 gi|282163989|ref|YP_003356374.1| - 0.39 10.7 5.3 3.2 7.8 3.6 1.9 1 1 0 1 1 1 0 Eukaryotic metallothionein DNA_RNApol_7kD PF03604.8 gi|282163989|ref|YP_003356374.1| - 1.4 8.4 4.9 5.1 6.6 3.4 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF21 PF01595.15 gi|282163990|ref|YP_003356375.1| - 2.2e-53 180.2 5.6 2.9e-53 179.8 3.9 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|282163990|ref|YP_003356375.1| - 1.8e-23 82.1 0.0 3.8e-23 81.0 0.0 1.6 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|282163990|ref|YP_003356375.1| - 1.6e-19 69.3 0.3 1.7e-08 34.0 0.2 2.5 2 0 0 2 2 2 2 CBS domain SurE PF01975.12 gi|282163991|ref|YP_003356376.1| - 1.2e-55 187.8 0.6 1.5e-55 187.5 0.4 1.1 1 0 0 1 1 1 1 Survival protein SurE MFS_1 PF07690.11 gi|282163992|ref|YP_003356377.1| - 2.7e-49 167.7 49.2 2.7e-49 167.7 34.1 3.7 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|282163992|ref|YP_003356377.1| - 1.6e-07 30.0 46.1 0.00037 19.0 22.8 3.1 1 1 1 2 2 2 2 MFS/sugar transport protein Ldr_toxin PF13940.1 gi|282163992|ref|YP_003356377.1| - 0.034 13.9 10.7 0.064 13.0 0.2 3.9 3 0 0 3 3 3 0 Toxin Ldr, type I toxin-antitoxin system Sar8_2 PF03058.9 gi|282163993|ref|YP_003356378.1| - 0.0077 16.5 0.3 0.013 15.7 0.1 1.6 2 0 0 2 2 2 1 Sar8.2 family Ank_3 PF13606.1 gi|282163993|ref|YP_003356378.1| - 0.067 13.4 0.0 0.15 12.3 0.0 1.7 1 0 0 1 1 1 0 Ankyrin repeat Lysis_col PF02402.11 gi|282163993|ref|YP_003356378.1| - 3.3 7.3 6.0 0.28 10.7 0.5 2.0 3 0 0 3 3 3 0 Lysis protein ATP-grasp_3 PF02655.9 gi|282163994|ref|YP_003356379.1| - 2.5e-35 121.7 0.0 3.4e-35 121.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|282163994|ref|YP_003356379.1| - 3.1e-08 33.5 0.0 2.8e-07 30.4 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|282163994|ref|YP_003356379.1| - 2e-07 30.0 0.0 0.00032 19.5 0.0 2.8 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|282163994|ref|YP_003356379.1| - 0.03 13.7 0.0 0.069 12.5 0.0 1.6 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus GATase PF00117.23 gi|282163994|ref|YP_003356379.1| - 0.14 11.5 0.0 0.27 10.6 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Hydantoinase_A PF01968.13 gi|282163995|ref|YP_003356380.1| - 2.7e-11 43.1 0.8 2e-10 40.2 0.3 2.4 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.1 gi|282163995|ref|YP_003356380.1| - 0.0022 16.4 0.2 0.1 10.8 0.0 2.6 3 0 0 3 3 3 2 MutL protein Hydant_A_N PF05378.8 gi|282163995|ref|YP_003356380.1| - 0.3 10.5 2.0 1.7 8.1 0.0 2.6 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region Lumazine_bd PF12870.2 gi|282163996|ref|YP_003356381.1| - 0.022 14.8 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 Lumazine-binding domain HmuY PF14064.1 gi|282163996|ref|YP_003356381.1| - 0.067 13.1 1.0 0.14 12.1 0.7 1.4 1 0 0 1 1 1 0 HmuY protein T2SE PF00437.15 gi|282163997|ref|YP_003356382.1| - 1.4e-45 155.3 0.0 2.4e-45 154.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|282163997|ref|YP_003356382.1| - 0.0033 16.9 0.1 0.007 15.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SF PF00482.18 gi|282163998|ref|YP_003356383.1| - 2.8e-27 95.0 1.3 1.7e-15 56.9 0.0 6.2 7 1 1 8 8 8 2 Type II secretion system (T2SS), protein F Sec20 PF03908.8 gi|282163998|ref|YP_003356383.1| - 0.14 11.8 3.8 0.49 10.1 0.0 3.1 3 0 0 3 3 3 0 Sec20 KaiC PF06745.8 gi|282163999|ref|YP_003356384.1| - 1.5e-08 34.0 0.0 2e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|282163999|ref|YP_003356384.1| - 0.015 14.7 0.0 0.065 12.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF2348 PF09807.4 gi|282163999|ref|YP_003356384.1| - 0.05 12.7 0.0 0.068 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2348) LysE PF01810.13 gi|282164001|ref|YP_003356386.1| - 2.9e-29 101.6 13.6 3.4e-29 101.4 9.4 1.0 1 0 0 1 1 1 1 LysE type translocator NMT1 PF09084.6 gi|282164002|ref|YP_003356387.1| - 9.1e-12 45.0 0.2 1.4e-11 44.3 0.1 1.4 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|282164002|ref|YP_003356387.1| - 1.1e-06 28.2 0.0 2e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|282164002|ref|YP_003356387.1| - 3.5e-06 26.4 0.0 8.1e-06 25.2 0.0 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 PBP_like PF12727.2 gi|282164002|ref|YP_003356387.1| - 0.0037 16.2 0.0 0.0055 15.6 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain OpuAC PF04069.7 gi|282164002|ref|YP_003356387.1| - 0.024 14.0 0.2 0.12 11.7 0.1 1.8 1 1 1 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system DUF1850 PF08905.6 gi|282164003|ref|YP_003356388.1| - 1e-18 66.9 0.0 1.3e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) PilX_N PF14341.1 gi|282164003|ref|YP_003356388.1| - 0.16 11.6 0.9 0.28 10.8 0.6 1.4 1 0 0 1 1 1 0 PilX N-terminal DctM PF06808.7 gi|282164004|ref|YP_003356389.1| - 9.5e-93 310.9 46.8 9.5e-93 310.9 32.4 1.8 2 0 0 2 2 2 1 DctM-like transporters DUF3394 PF11874.3 gi|282164004|ref|YP_003356389.1| - 1.2 8.6 7.8 0.33 10.4 0.4 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3394) zf-ribbon_3 PF13248.1 gi|282164005|ref|YP_003356390.1| - 4e-05 22.6 3.9 0.00041 19.4 0.7 2.3 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|282164005|ref|YP_003356390.1| - 0.00028 20.6 3.1 0.00043 20.0 2.2 1.4 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|282164005|ref|YP_003356390.1| - 0.0017 17.7 4.5 0.23 10.9 1.4 3.2 2 1 0 2 2 2 1 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|282164005|ref|YP_003356390.1| - 0.002 17.7 6.8 0.29 10.8 0.0 3.4 4 0 0 4 4 3 2 Zinc finger found in FPG and IleRS LIM PF00412.17 gi|282164005|ref|YP_003356390.1| - 0.009 16.0 5.6 0.035 14.1 1.1 2.2 1 1 1 2 2 2 1 LIM domain TerY-C PF15616.1 gi|282164005|ref|YP_003356390.1| - 0.014 15.3 3.3 0.015 15.2 2.3 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain Trm112p PF03966.11 gi|282164005|ref|YP_003356390.1| - 0.014 15.7 1.4 1.9 8.8 0.1 2.2 2 0 0 2 2 2 0 Trm112p-like protein DUF4428 PF14471.1 gi|282164005|ref|YP_003356390.1| - 0.014 15.0 4.2 0.014 15.0 2.9 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF4428) zf-NADH-PPase PF09297.6 gi|282164005|ref|YP_003356390.1| - 0.02 14.3 9.0 1.1 8.8 0.2 3.2 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain RecR PF02132.10 gi|282164005|ref|YP_003356390.1| - 0.037 13.4 1.2 0.037 13.4 0.9 2.1 2 0 0 2 2 2 0 RecR protein zinc-ribbons_6 PF07191.7 gi|282164005|ref|YP_003356390.1| - 0.041 13.6 7.4 0.24 11.2 1.6 2.1 1 1 0 2 2 2 0 zinc-ribbons Mu-like_Com PF10122.4 gi|282164005|ref|YP_003356390.1| - 0.073 12.1 5.2 1.4 8.0 0.6 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com C1_1 PF00130.17 gi|282164005|ref|YP_003356390.1| - 0.17 11.6 8.6 0.076 12.7 1.9 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-P11 PF03854.9 gi|282164005|ref|YP_003356390.1| - 0.18 11.2 5.2 1.1 8.8 0.8 2.1 2 0 0 2 2 2 0 P-11 zinc finger zf-C3HC4_3 PF13920.1 gi|282164005|ref|YP_003356390.1| - 0.2 11.3 9.3 0.46 10.1 2.4 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF2180 PF09947.4 gi|282164005|ref|YP_003356390.1| - 0.33 10.7 6.5 0.52 10.1 1.5 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) Lar_restr_allev PF14354.1 gi|282164005|ref|YP_003356390.1| - 0.46 10.8 6.9 0.22 11.8 1.2 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar YhfH PF14149.1 gi|282164005|ref|YP_003356390.1| - 0.5 10.1 12.4 0.47 10.2 2.0 3.0 2 1 1 3 3 2 0 YhfH-like protein zinc_ribbon_5 PF13719.1 gi|282164005|ref|YP_003356390.1| - 0.57 9.8 8.0 5.8 6.5 0.4 3.2 2 1 1 3 3 3 0 zinc-ribbon domain zf-RING_6 PF14835.1 gi|282164005|ref|YP_003356390.1| - 0.73 9.6 5.1 1 9.2 3.5 1.5 1 1 0 1 1 1 0 zf-RING of BARD1-type protein zinc_ribbon_4 PF13717.1 gi|282164005|ref|YP_003356390.1| - 0.85 9.3 8.6 7.8 6.2 0.5 3.2 2 1 1 3 3 3 0 zinc-ribbon domain zf-RING_5 PF14634.1 gi|282164005|ref|YP_003356390.1| - 0.94 9.2 8.6 0.59 9.8 1.9 2.3 2 0 0 2 2 2 0 zinc-RING finger domain TF_Zn_Ribbon PF08271.7 gi|282164005|ref|YP_003356390.1| - 1 8.7 6.8 9.4 5.6 1.7 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding zf-B_box PF00643.19 gi|282164005|ref|YP_003356390.1| - 1.3 9.0 7.7 1.3 8.9 1.4 2.3 2 0 0 2 2 2 0 B-box zinc finger zf-ISL3 PF14690.1 gi|282164005|ref|YP_003356390.1| - 1.5 8.8 10.7 1.1 9.3 0.2 3.0 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_S27e PF01667.12 gi|282164005|ref|YP_003356390.1| - 1.7 8.2 8.8 4.1 7.0 0.8 2.9 2 1 1 3 3 3 0 Ribosomal protein S27 Carla_C4 PF01623.12 gi|282164005|ref|YP_003356390.1| - 1.8 8.3 6.2 1.9 8.2 0.3 2.1 2 0 0 2 2 2 0 Carlavirus putative nucleic acid binding protein DUF1451 PF07295.6 gi|282164005|ref|YP_003356390.1| - 2.2 8.0 5.1 17 5.1 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) zf-C2HC5 PF06221.8 gi|282164005|ref|YP_003356390.1| - 2.3 8.0 8.8 0.3 10.8 2.7 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Zn_ribbon_recom PF13408.1 gi|282164005|ref|YP_003356390.1| - 2.5 8.4 12.5 0.52 10.6 0.8 2.4 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain OrfB_Zn_ribbon PF07282.6 gi|282164005|ref|YP_003356390.1| - 2.6 7.7 8.0 5 6.8 0.8 2.6 1 1 2 3 3 3 0 Putative transposase DNA-binding domain zf-HIT PF04438.11 gi|282164005|ref|YP_003356390.1| - 3.5 7.3 14.3 14 5.3 4.7 3.0 2 1 0 2 2 2 0 HIT zinc finger zf-RING_2 PF13639.1 gi|282164005|ref|YP_003356390.1| - 3.9 7.3 7.9 17 5.3 5.5 2.1 1 1 0 1 1 1 0 Ring finger domain Stc1 PF12898.2 gi|282164005|ref|YP_003356390.1| - 4.1 7.5 7.4 2.7 8.1 4.3 1.6 1 1 0 1 1 1 0 Stc1 domain Nudix_N_2 PF14803.1 gi|282164005|ref|YP_003356390.1| - 4.6 7.0 7.9 13 5.5 0.3 3.0 3 0 0 3 3 3 0 Nudix N-terminal Desulfoferrod_N PF06397.7 gi|282164005|ref|YP_003356390.1| - 5.2 6.5 6.5 4.3 6.7 0.4 2.6 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Sgf11 PF08209.6 gi|282164005|ref|YP_003356390.1| - 6.5 6.1 8.3 1.5 8.1 0.2 2.9 2 1 1 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-dskA_traR PF01258.12 gi|282164005|ref|YP_003356390.1| - 7.9 6.3 11.7 35 4.2 0.3 3.1 2 1 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-MYND PF01753.13 gi|282164005|ref|YP_003356390.1| - 8.5 6.3 10.9 45 4.0 0.9 2.3 1 1 1 2 2 2 0 MYND finger Ribosomal_L37e PF01907.14 gi|282164005|ref|YP_003356390.1| - 9.8 6.0 10.3 4.5 7.1 3.2 2.2 1 1 1 2 2 2 0 Ribosomal protein L37e DUF362 PF04015.7 gi|282164006|ref|YP_003356391.1| - 5.5e-24 84.7 0.0 7.4e-24 84.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Lactamase_B_3 PF13483.1 gi|282164007|ref|YP_003356392.1| - 5e-21 75.0 0.2 9.4e-21 74.1 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|282164007|ref|YP_003356392.1| - 4.7e-15 55.6 0.1 6.1e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|282164007|ref|YP_003356392.1| - 1.4e-08 34.6 0.5 2.6e-08 33.7 0.4 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HTH_Tnp_1 PF01527.15 gi|282164008|ref|YP_003356393.1| - 7e-12 45.1 0.9 9.1e-12 44.7 0.6 1.3 1 1 0 1 1 1 1 Transposase HTH_28 PF13518.1 gi|282164008|ref|YP_003356393.1| - 3.7e-06 26.8 0.0 8e-06 25.7 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|282164008|ref|YP_003356393.1| - 0.0014 17.7 0.1 0.0063 15.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.1 gi|282164008|ref|YP_003356393.1| - 0.026 14.6 0.6 0.033 14.3 0.4 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Frankia_peptide PF14407.1 gi|282164008|ref|YP_003356393.1| - 0.1 12.3 0.3 0.81 9.4 0.1 2.1 2 0 0 2 2 2 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. DUF3972 PF13118.1 gi|282164008|ref|YP_003356393.1| - 0.11 12.5 0.1 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3972) bZIP_1 PF00170.16 gi|282164008|ref|YP_003356393.1| - 5.2 7.1 8.1 0.14 12.1 0.9 1.8 2 0 0 2 2 2 0 bZIP transcription factor rve PF00665.21 gi|282164009|ref|YP_003356394.1| - 1.3e-26 93.0 0.0 1.9e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|282164009|ref|YP_003356394.1| - 1e-19 69.7 0.1 1.9e-19 68.9 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.1 gi|282164009|ref|YP_003356394.1| - 1.1e-10 41.2 6.4 1.1e-10 41.2 4.4 2.5 3 0 0 3 3 3 1 HTH-like domain rve_2 PF13333.1 gi|282164009|ref|YP_003356394.1| - 2.6e-08 33.7 3.6 2.6e-08 33.7 2.5 1.7 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.1 gi|282164009|ref|YP_003356394.1| - 4.4e-08 33.1 0.1 6.5e-08 32.6 0.1 1.3 1 0 0 1 1 1 1 DDE domain HTH_29 PF13551.1 gi|282164009|ref|YP_003356394.1| - 0.0028 17.7 0.4 0.044 13.9 0.1 2.8 2 1 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|282164009|ref|YP_003356394.1| - 0.0068 16.3 0.1 0.027 14.4 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain SLT_L PF14718.1 gi|282164009|ref|YP_003356394.1| - 0.11 12.3 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Soluble lytic murein transglycosylase L domain Gly-zipper_OmpA PF13436.1 gi|282164010|ref|YP_003356395.1| - 0.0011 18.6 3.2 0.32 10.6 0.4 2.1 2 0 0 2 2 2 2 Glycine-zipper containing OmpA-like membrane domain Gly-zipper_YMGG PF13441.1 gi|282164010|ref|YP_003356395.1| - 0.019 14.4 8.1 0.4 10.2 6.0 2.1 1 1 0 1 1 1 0 YMGG-like Gly-zipper DUF3816 PF12822.2 gi|282164010|ref|YP_003356395.1| - 0.06 13.2 5.6 0.078 12.8 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) Gly-zipper_Omp PF13488.1 gi|282164010|ref|YP_003356395.1| - 0.096 12.3 9.8 3.1 7.4 6.6 2.2 1 1 0 1 1 1 0 Glycine zipper Bacteriocin_IIc PF10439.4 gi|282164010|ref|YP_003356395.1| - 0.13 12.4 0.8 0.13 12.4 0.6 2.2 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide DUF2955 PF11168.3 gi|282164010|ref|YP_003356395.1| - 0.14 11.8 4.8 0.16 11.6 3.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2955) Rick_17kDa_Anti PF05433.10 gi|282164010|ref|YP_003356395.1| - 0.86 9.3 10.1 0.17 11.5 1.0 2.4 2 0 0 2 2 2 0 Glycine zipper 2TM domain DUF1049 PF06305.6 gi|282164010|ref|YP_003356395.1| - 1.1 8.8 8.7 0.8 9.2 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) SPC12 PF06645.8 gi|282164010|ref|YP_003356395.1| - 1.2 9.0 3.7 2.3 8.1 0.2 2.1 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF543 PF04418.7 gi|282164010|ref|YP_003356395.1| - 1.3 9.0 5.5 6.3 6.8 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF543) FUN14 PF04930.10 gi|282164010|ref|YP_003356395.1| - 1.3 9.3 6.0 0.43 10.8 0.3 2.1 1 1 0 2 2 2 0 FUN14 family UT PF03253.9 gi|282164010|ref|YP_003356395.1| - 1.9 7.3 8.0 2.5 6.8 2.3 2.0 1 1 1 2 2 2 0 Urea transporter 5TM-5TMR_LYT PF07694.7 gi|282164010|ref|YP_003356395.1| - 4.6 6.5 13.0 87 2.3 8.7 2.0 1 1 0 1 1 1 0 5TMR of 5TMR-LYT Romo1 PF10247.4 gi|282164010|ref|YP_003356395.1| - 5.7 7.2 11.7 10 6.4 1.8 2.3 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 PadR PF03551.9 gi|282164011|ref|YP_003356396.1| - 3.6e-11 42.6 0.0 6e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family PAS_9 PF13426.1 gi|282164012|ref|YP_003356397.1| - 1.1e-17 64.2 0.0 3.4e-12 46.6 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.1 gi|282164012|ref|YP_003356397.1| - 6.7e-16 57.4 0.0 1.5e-07 30.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|282164012|ref|YP_003356397.1| - 9.1e-16 57.6 0.0 2.3e-10 40.2 0.0 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|282164012|ref|YP_003356397.1| - 6.9e-15 54.7 0.0 1.4e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|282164012|ref|YP_003356397.1| - 1.2e-13 50.9 0.1 9.2e-08 32.0 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|282164012|ref|YP_003356397.1| - 2.7e-09 37.0 0.0 0.0012 18.7 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|282164012|ref|YP_003356397.1| - 3.9e-05 23.4 0.0 0.0001 22.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282164012|ref|YP_003356397.1| - 0.0015 18.1 0.0 0.0031 17.1 0.0 1.5 1 0 0 1 1 1 1 GHKL domain Lip_prot_lig_C PF10437.4 gi|282164012|ref|YP_003356397.1| - 0.0081 15.8 0.5 3.7 7.2 0.0 3.3 3 0 0 3 3 3 1 Bacterial lipoate protein ligase C-terminus HATPase_c_3 PF13589.1 gi|282164012|ref|YP_003356397.1| - 0.023 14.3 0.0 0.054 13.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HTH_AsnC-type PF13404.1 gi|282164013|ref|YP_003356398.1| - 6.5e-14 51.1 0.2 1e-13 50.5 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|282164013|ref|YP_003356398.1| - 9.4e-14 50.5 0.1 1.4e-13 50.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|282164013|ref|YP_003356398.1| - 2.7e-07 30.2 0.0 4.5e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|282164013|ref|YP_003356398.1| - 6.3e-07 28.9 0.1 1.2e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 MarR family AsnC_trans_reg PF01037.16 gi|282164013|ref|YP_003356398.1| - 1.8e-06 27.5 0.0 2.9e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|282164013|ref|YP_003356398.1| - 4.5e-06 26.2 0.0 8e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|282164013|ref|YP_003356398.1| - 1.8e-05 24.3 0.0 3.4e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|282164013|ref|YP_003356398.1| - 0.00023 21.0 0.1 0.00037 20.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|282164013|ref|YP_003356398.1| - 0.00061 19.3 0.1 0.0012 18.4 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.2 gi|282164013|ref|YP_003356398.1| - 0.0014 18.4 0.0 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|282164013|ref|YP_003356398.1| - 0.0026 17.1 0.1 0.0037 16.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|282164013|ref|YP_003356398.1| - 0.0047 17.0 0.0 0.0092 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|282164013|ref|YP_003356398.1| - 0.013 15.2 0.1 0.028 14.0 0.1 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|282164013|ref|YP_003356398.1| - 0.044 13.3 0.0 0.15 11.7 0.0 1.8 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HTH_DeoR PF08220.7 gi|282164013|ref|YP_003356398.1| - 0.045 13.2 0.0 0.076 12.5 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_CodY PF08222.6 gi|282164013|ref|YP_003356398.1| - 0.06 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_34 PF13601.1 gi|282164013|ref|YP_003356398.1| - 0.072 13.1 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_30 PF13556.1 gi|282164013|ref|YP_003356398.1| - 0.083 12.4 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain UPF0122 PF04297.9 gi|282164013|ref|YP_003356398.1| - 0.11 12.5 0.1 1.3 9.0 0.0 2.2 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_8 PF02954.14 gi|282164013|ref|YP_003356398.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family AdoHcyase PF05221.12 gi|282164014|ref|YP_003356399.1| - 1.9e-69 233.6 1.3 2.1e-69 233.4 0.9 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|282164014|ref|YP_003356399.1| - 2.3e-53 180.3 3.3 2.3e-53 180.3 2.3 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|282164014|ref|YP_003356399.1| - 7.5e-12 44.7 2.2 1.6e-11 43.7 0.4 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|282164014|ref|YP_003356399.1| - 7.5e-10 38.4 1.6 1.2e-09 37.7 0.2 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|282164014|ref|YP_003356399.1| - 0.0042 17.0 3.0 0.0044 17.0 0.0 2.6 4 0 0 4 4 3 1 TrkA-N domain Pyr_redox_2 PF07992.9 gi|282164014|ref|YP_003356399.1| - 0.014 15.2 0.4 0.044 13.6 0.1 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|282164014|ref|YP_003356399.1| - 0.014 15.0 0.4 0.014 15.0 0.3 2.6 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|282164014|ref|YP_003356399.1| - 0.016 14.0 0.8 2.3 6.9 0.7 2.3 1 1 1 2 2 2 0 FAD binding domain NAD_binding_7 PF13241.1 gi|282164014|ref|YP_003356399.1| - 0.037 14.2 0.6 0.15 12.3 0.1 2.2 2 1 0 2 2 2 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|282164014|ref|YP_003356399.1| - 0.042 13.4 0.6 0.13 11.8 0.1 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain THF_DHG_CYH_C PF02882.14 gi|282164014|ref|YP_003356399.1| - 0.047 12.7 1.8 0.28 10.2 1.3 2.0 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF364 PF04016.7 gi|282164014|ref|YP_003356399.1| - 0.057 12.7 0.5 0.19 11.0 0.0 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF364) NAD_binding_2 PF03446.10 gi|282164014|ref|YP_003356399.1| - 0.073 12.9 3.1 0.13 12.1 0.8 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|282164014|ref|YP_003356399.1| - 0.2 12.0 4.1 0.33 11.3 0.2 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase PfkB PF00294.19 gi|282164015|ref|YP_003356400.1| - 2.3e-30 105.7 0.0 3.2e-30 105.3 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase RAP1 PF07218.6 gi|282164015|ref|YP_003356400.1| - 0.043 11.9 0.4 0.059 11.4 0.3 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) APH PF01636.18 gi|282164016|ref|YP_003356401.1| - 4.2e-08 33.2 1.7 9.4e-08 32.0 0.5 1.9 2 1 0 2 2 2 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|282164016|ref|YP_003356401.1| - 0.018 14.4 0.0 0.031 13.6 0.0 1.3 1 0 0 1 1 1 0 RIO1 family EcKinase PF02958.15 gi|282164016|ref|YP_003356401.1| - 0.044 12.9 0.1 0.069 12.2 0.0 1.3 1 0 0 1 1 1 0 Ecdysteroid kinase APS_kinase PF01583.15 gi|282164017|ref|YP_003356402.1| - 1.4e-30 106.0 0.0 1.7e-30 105.7 0.0 1.1 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|282164017|ref|YP_003356402.1| - 3.5e-11 43.1 0.0 5.9e-11 42.4 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|282164017|ref|YP_003356402.1| - 2.5e-09 37.5 0.0 3.7e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|282164017|ref|YP_003356402.1| - 3.4e-08 34.3 0.1 5.1e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|282164017|ref|YP_003356402.1| - 8.9e-08 31.6 0.0 1.1e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 CPT PF07931.7 gi|282164017|ref|YP_003356402.1| - 4.4e-06 26.4 0.3 3.8e-05 23.3 0.2 2.0 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein ATP_bind_1 PF03029.12 gi|282164017|ref|YP_003356402.1| - 0.00021 20.8 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|282164017|ref|YP_003356402.1| - 0.00034 19.7 0.1 0.00078 18.5 0.0 1.6 1 1 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|282164017|ref|YP_003356402.1| - 0.00059 19.5 1.4 0.0016 18.1 1.0 2.0 1 1 0 1 1 1 1 Part of AAA domain ArgK PF03308.11 gi|282164017|ref|YP_003356402.1| - 0.0008 18.2 0.1 0.0014 17.4 0.1 1.3 1 0 0 1 1 1 1 ArgK protein 6PF2K PF01591.13 gi|282164017|ref|YP_003356402.1| - 0.0013 17.8 0.0 0.0072 15.4 0.0 1.9 1 1 0 1 1 1 1 6-phosphofructo-2-kinase NTPase_1 PF03266.10 gi|282164017|ref|YP_003356402.1| - 0.0027 17.4 0.1 0.0042 16.8 0.1 1.3 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.1 gi|282164017|ref|YP_003356402.1| - 0.0049 16.8 0.0 0.0069 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|282164017|ref|YP_003356402.1| - 0.0063 16.2 0.1 0.011 15.4 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|282164017|ref|YP_003356402.1| - 0.0095 16.1 0.0 0.015 15.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.12 gi|282164017|ref|YP_003356402.1| - 0.013 14.8 0.2 0.35 10.2 0.0 2.2 1 1 1 2 2 2 0 Thymidylate kinase AAA_30 PF13604.1 gi|282164017|ref|YP_003356402.1| - 0.016 14.8 0.1 0.055 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|282164017|ref|YP_003356402.1| - 0.017 15.0 0.0 0.027 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain PRK PF00485.13 gi|282164017|ref|YP_003356402.1| - 0.024 14.1 0.4 0.87 9.1 0.0 2.1 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_10 PF12846.2 gi|282164017|ref|YP_003356402.1| - 0.043 13.2 0.0 0.66 9.3 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain SKI PF01202.17 gi|282164017|ref|YP_003356402.1| - 0.057 13.2 0.1 0.21 11.4 0.1 1.8 1 1 0 1 1 1 0 Shikimate kinase SRP54 PF00448.17 gi|282164017|ref|YP_003356402.1| - 0.083 12.3 0.2 0.4 10.1 0.2 2.0 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|282164017|ref|YP_003356402.1| - 0.096 12.2 0.0 0.48 10.0 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain Inositol_P PF00459.20 gi|282164018|ref|YP_003356403.1| - 6.9e-34 117.3 0.0 8.2e-34 117.1 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|282164018|ref|YP_003356403.1| - 6.8e-08 31.6 0.0 9.2e-08 31.2 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase PRTP PF01366.13 gi|282164019|ref|YP_003356404.1| - 0.089 10.7 0.0 0.097 10.6 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus processing and transport protein PAS_3 PF08447.6 gi|282164020|ref|YP_003356405.1| - 5.3e-28 96.9 0.2 8.1e-19 67.5 0.0 4.3 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.1 gi|282164020|ref|YP_003356405.1| - 4.7e-27 94.4 0.2 1.4e-13 51.1 0.0 4.3 4 1 0 4 4 4 3 PAS domain PAS PF00989.19 gi|282164020|ref|YP_003356405.1| - 6.5e-21 74.2 0.0 2e-10 40.4 0.0 4.0 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|282164020|ref|YP_003356405.1| - 4.1e-20 71.5 0.2 3.9e-19 68.4 0.0 2.6 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|282164020|ref|YP_003356405.1| - 1.8e-14 54.4 0.1 3.9e-14 53.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|282164020|ref|YP_003356405.1| - 2.3e-12 46.9 0.0 0.00013 21.9 0.0 3.9 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.1 gi|282164020|ref|YP_003356405.1| - 6.1e-12 44.9 0.0 4.5e-06 26.3 0.0 3.2 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.1 gi|282164020|ref|YP_003356405.1| - 6.7e-07 29.4 0.1 2e-06 27.9 0.0 1.9 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|282164020|ref|YP_003356405.1| - 1.9e-05 24.8 0.1 3.6e-05 23.9 0.1 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|282164020|ref|YP_003356405.1| - 0.0036 17.0 0.0 0.0087 15.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DegS PF05384.6 gi|282164020|ref|YP_003356405.1| - 0.23 10.6 4.2 0.24 10.6 1.6 2.0 2 0 0 2 2 2 0 Sensor protein DegS HATPase_c PF02518.21 gi|282164021|ref|YP_003356406.1| - 4.7e-20 71.3 0.0 1e-19 70.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|282164021|ref|YP_003356406.1| - 9.2e-13 48.1 0.1 1.2e-11 44.5 0.0 2.6 3 0 0 3 3 2 1 PAS fold HAMP PF00672.20 gi|282164021|ref|YP_003356406.1| - 1.7e-12 47.3 0.0 4.7e-12 45.9 0.0 1.8 1 0 0 1 1 1 1 HAMP domain PAS_9 PF13426.1 gi|282164021|ref|YP_003356406.1| - 4.3e-10 39.9 0.0 1.9e-09 37.8 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|282164021|ref|YP_003356406.1| - 2.7e-08 33.6 0.0 6.7e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|282164021|ref|YP_003356406.1| - 1.1e-06 28.2 0.0 3.6e-06 26.6 0.0 1.9 1 0 0 1 1 1 1 PAS domain Cache_1 PF02743.13 gi|282164021|ref|YP_003356406.1| - 7.5e-06 25.4 0.3 2e-05 24.0 0.2 1.7 1 0 0 1 1 1 1 Cache domain Cache_3 PF14827.1 gi|282164021|ref|YP_003356406.1| - 1.5e-05 24.8 0.3 4.3e-05 23.3 0.1 1.9 2 0 0 2 2 1 1 Sensory domain of two-component sensor kinase HATPase_c_2 PF13581.1 gi|282164021|ref|YP_003356406.1| - 1.8e-05 24.5 0.0 4.6e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|282164021|ref|YP_003356406.1| - 8.9e-05 22.4 0.0 0.0032 17.4 0.0 2.5 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|282164021|ref|YP_003356406.1| - 0.00041 20.0 0.0 0.00094 18.8 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|282164021|ref|YP_003356406.1| - 0.024 14.3 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMP24_GP25L PF01105.19 gi|282164021|ref|YP_003356406.1| - 0.15 11.7 0.0 0.4 10.3 0.0 1.7 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD VWA_3 PF13768.1 gi|282164021|ref|YP_003356406.1| - 0.16 11.6 0.2 0.92 9.1 0.0 2.0 2 0 0 2 2 2 0 von Willebrand factor type A domain Flavoprotein PF02441.14 gi|282164022|ref|YP_003356407.1| - 3.9e-13 49.2 0.0 5.3e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.22 gi|282164022|ref|YP_003356407.1| - 2.5e-09 36.3 11.0 1.4e-06 27.6 0.9 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282164022|ref|YP_003356407.1| - 3.5e-05 24.4 8.3 0.00079 20.1 0.1 2.6 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|282164022|ref|YP_003356407.1| - 4e-05 23.2 12.3 0.0028 17.4 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282164022|ref|YP_003356407.1| - 4.8e-05 23.6 10.2 0.00067 19.9 0.9 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282164022|ref|YP_003356407.1| - 0.00055 19.6 14.9 0.0029 17.4 0.8 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282164022|ref|YP_003356407.1| - 0.0024 17.6 13.0 0.014 15.1 0.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282164022|ref|YP_003356407.1| - 0.0038 17.5 5.7 0.05 13.9 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282164022|ref|YP_003356407.1| - 0.0048 16.8 3.3 0.075 13.0 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282164022|ref|YP_003356407.1| - 0.008 16.7 10.2 0.2 12.2 0.3 3.2 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|282164022|ref|YP_003356407.1| - 0.058 13.6 3.0 0.058 13.6 2.1 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282164022|ref|YP_003356407.1| - 0.064 13.6 1.9 0.064 13.6 1.3 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282164022|ref|YP_003356407.1| - 0.82 9.5 12.9 2.2 8.1 1.7 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282164022|ref|YP_003356407.1| - 3.7 8.0 14.6 2.8 8.3 1.0 3.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain PAP2 PF01569.16 gi|282164023|ref|YP_003356408.1| - 3.5e-23 81.6 2.8 3.5e-23 81.6 1.9 2.5 3 0 0 3 3 3 2 PAP2 superfamily PAP2_3 PF14378.1 gi|282164023|ref|YP_003356408.1| - 0.0037 16.8 0.0 0.0037 16.8 0.0 2.3 3 0 0 3 3 3 1 PAP2 superfamily Lipase_GDSL_3 PF14606.1 gi|282164024|ref|YP_003356409.1| - 0.14 11.8 0.1 0.26 11.0 0.1 1.3 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family Rad50_zn_hook PF04423.9 gi|282164025|ref|YP_003356410.1| - 0.031 13.7 1.3 0.86 9.1 0.0 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif TrbC_Ftype PF09673.5 gi|282164025|ref|YP_003356410.1| - 0.039 13.5 0.0 0.066 12.8 0.0 1.3 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein PHA_gran_rgn PF09650.5 gi|282164025|ref|YP_003356410.1| - 0.062 13.4 0.0 0.088 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) YhfH PF14149.1 gi|282164025|ref|YP_003356410.1| - 0.069 12.9 10.9 1.1 9.1 0.2 3.5 2 1 1 3 3 3 0 YhfH-like protein GCC2_GCC3 PF07699.8 gi|282164025|ref|YP_003356410.1| - 0.074 12.6 2.1 2.3 7.8 0.5 2.4 2 0 0 2 2 2 0 GCC2 and GCC3 zf-NADH-PPase PF09297.6 gi|282164025|ref|YP_003356410.1| - 0.084 12.3 7.5 0.87 9.1 0.1 3.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|282164025|ref|YP_003356410.1| - 0.091 11.9 12.0 0.06 12.5 1.9 2.9 3 1 0 3 3 3 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|282164025|ref|YP_003356410.1| - 0.32 10.5 2.1 1.7 8.2 0.1 2.4 2 0 0 2 2 2 0 Ribosomal protein S27 DZR PF12773.2 gi|282164025|ref|YP_003356410.1| - 0.33 10.8 7.2 0.8 9.5 1.1 3.1 3 1 0 3 3 3 0 Double zinc ribbon Nop10p PF04135.7 gi|282164025|ref|YP_003356410.1| - 0.74 9.5 3.8 7.2 6.4 0.1 2.8 2 1 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zinc_ribbon_2 PF13240.1 gi|282164025|ref|YP_003356410.1| - 0.76 9.3 12.3 6.4 6.4 0.1 3.6 4 0 0 4 4 4 0 zinc-ribbon domain Cys_rich_CPCC PF14206.1 gi|282164025|ref|YP_003356410.1| - 1.3 8.6 4.4 1.8 8.1 0.8 2.8 3 1 1 4 4 4 0 Cysteine-rich CPCC zf-TFIIB PF13453.1 gi|282164025|ref|YP_003356410.1| - 1.6 8.0 7.6 6.9 5.9 0.0 3.6 4 0 0 4 4 4 0 Transcription factor zinc-finger HypA PF01155.14 gi|282164025|ref|YP_003356410.1| - 2.4 7.8 6.4 1.6 8.4 0.3 2.5 3 1 0 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-tcix PF14952.1 gi|282164025|ref|YP_003356410.1| - 2.6 7.4 12.6 0.39 10.0 0.3 3.2 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Prok-RING_1 PF14446.1 gi|282164025|ref|YP_003356410.1| - 3.1 7.6 10.3 0.26 11.0 0.6 3.2 3 1 0 3 3 3 0 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.7 gi|282164025|ref|YP_003356410.1| - 3.2 7.6 11.2 3 7.7 0.0 3.8 3 1 0 3 3 3 0 PhnA Zinc-Ribbon zf-C4_Topoisom PF01396.14 gi|282164025|ref|YP_003356410.1| - 6 6.4 9.7 6.9 6.2 0.2 3.3 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DUF35_N PF12172.3 gi|282164025|ref|YP_003356410.1| - 6.7 6.7 0.0 6.7 6.7 0.0 3.5 3 1 1 4 4 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PvlArgDC PF01862.11 gi|282164026|ref|YP_003356411.1| - 4.5e-65 218.2 0.0 5e-65 218.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) YlaH PF14036.1 gi|282164027|ref|YP_003356412.1| - 0.064 13.3 3.0 0.074 13.1 2.1 1.1 1 0 0 1 1 1 0 YlaH-like protein DUF1469 PF07332.6 gi|282164027|ref|YP_003356412.1| - 0.94 9.2 3.0 1.1 8.9 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF1206 PF06724.6 gi|282164027|ref|YP_003356412.1| - 1.4 8.6 4.1 14 5.5 0.5 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) PAPS_reduct PF01507.14 gi|282164028|ref|YP_003356413.1| - 5.2e-45 153.3 0.0 7.9e-45 152.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.2 gi|282164028|ref|YP_003356413.1| - 8e-08 32.5 12.4 8e-08 32.5 8.6 2.6 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282164028|ref|YP_003356413.1| - 1.1e-06 28.3 10.2 1.1e-06 28.3 7.1 2.5 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282164028|ref|YP_003356413.1| - 3.8e-05 23.0 1.6 3.8e-05 23.0 1.1 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|282164028|ref|YP_003356413.1| - 6e-05 23.2 12.3 6e-05 23.2 8.5 2.8 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282164028|ref|YP_003356413.1| - 6.5e-05 22.6 15.2 0.00059 19.5 2.4 3.4 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|282164028|ref|YP_003356413.1| - 0.00012 22.3 6.0 0.011 16.0 0.2 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain PUA PF01472.15 gi|282164028|ref|YP_003356413.1| - 0.0045 16.6 0.2 0.014 15.1 0.1 1.9 2 0 0 2 2 2 1 PUA domain Fer4_8 PF13183.1 gi|282164028|ref|YP_003356413.1| - 0.009 16.0 0.1 0.009 16.0 0.1 3.2 4 0 0 4 4 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282164028|ref|YP_003356413.1| - 0.01 15.7 14.6 0.014 15.2 2.6 3.8 4 1 0 4 4 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282164028|ref|YP_003356413.1| - 0.017 14.9 0.2 0.017 14.9 0.1 3.4 4 0 0 4 4 4 0 4Fe-4S dicluster domain ATP_bind_3 PF01171.15 gi|282164028|ref|YP_003356413.1| - 0.027 13.9 0.0 0.05 13.0 0.0 1.5 1 0 0 1 1 1 0 PP-loop family Asn_synthase PF00733.16 gi|282164028|ref|YP_003356413.1| - 0.037 13.5 0.0 0.088 12.2 0.0 1.5 1 0 0 1 1 1 0 Asparagine synthase LGFP PF08310.6 gi|282164028|ref|YP_003356413.1| - 0.072 12.7 0.2 4.3 7.0 0.0 2.6 2 0 0 2 2 2 0 LGFP repeat QueC PF06508.8 gi|282164028|ref|YP_003356413.1| - 0.23 10.6 0.0 0.23 10.6 0.0 2.1 2 0 0 2 2 1 0 Queuosine biosynthesis protein QueC Fer4_16 PF13484.1 gi|282164028|ref|YP_003356413.1| - 0.28 11.9 20.8 0.79 10.5 8.9 4.0 4 1 1 5 5 4 0 4Fe-4S double cluster binding domain Meth_synt_2 PF01717.13 gi|282164029|ref|YP_003356414.1| - 8.5e-59 199.1 9.0 1.2e-57 195.2 6.3 2.0 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|282164029|ref|YP_003356414.1| - 3.7e-10 39.5 0.2 9.2e-10 38.2 0.0 1.6 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|282164029|ref|YP_003356414.1| - 9.7e-05 21.4 1.3 0.00017 20.6 0.9 1.5 1 1 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Xan_ur_permease PF00860.15 gi|282164031|ref|YP_003356416.1| - 1.5e-37 129.0 53.5 3.1e-37 128.0 37.1 1.5 1 1 0 1 1 1 1 Permease family Prominin PF05478.6 gi|282164031|ref|YP_003356416.1| - 0.012 13.2 2.9 0.025 12.1 2.0 1.5 1 0 0 1 1 1 0 Prominin TM2 PF05154.11 gi|282164032|ref|YP_003356417.1| - 2.7e-08 33.9 4.2 3.4e-08 33.5 2.6 1.4 1 1 0 1 1 1 1 TM2 domain Fer2_3 PF13085.1 gi|282164032|ref|YP_003356417.1| - 0.0019 18.0 0.1 0.0022 17.8 0.1 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain PT PF04886.7 gi|282164032|ref|YP_003356417.1| - 0.0036 16.5 21.4 0.0079 15.4 14.8 1.5 1 0 0 1 1 1 1 PT repeat zf-B_box PF00643.19 gi|282164032|ref|YP_003356417.1| - 0.0068 16.2 5.1 0.014 15.3 1.1 2.1 2 0 0 2 2 2 1 B-box zinc finger zf-C2HC5 PF06221.8 gi|282164032|ref|YP_003356417.1| - 0.021 14.5 5.7 0.034 13.8 4.0 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type LIM PF00412.17 gi|282164032|ref|YP_003356417.1| - 0.032 14.3 4.1 0.05 13.6 2.8 1.3 1 0 0 1 1 1 0 LIM domain SPC12 PF06645.8 gi|282164032|ref|YP_003356417.1| - 0.033 13.9 2.7 0.056 13.2 1.9 1.3 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) zf-piccolo PF05715.8 gi|282164032|ref|YP_003356417.1| - 0.076 13.0 2.7 0.16 12.0 1.9 1.6 1 0 0 1 1 1 0 Piccolo Zn-finger V_ATPase_I PF01496.14 gi|282164032|ref|YP_003356417.1| - 0.16 9.8 0.7 0.2 9.5 0.5 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family zf-C3HC4_2 PF13923.1 gi|282164032|ref|YP_003356417.1| - 0.18 11.8 10.7 0.46 10.5 1.1 2.6 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) FYVE PF01363.16 gi|282164032|ref|YP_003356417.1| - 0.36 10.7 8.4 26 4.7 5.8 2.2 1 1 0 1 1 1 0 FYVE zinc finger DUF4106 PF13388.1 gi|282164032|ref|YP_003356417.1| - 1 8.2 3.7 1.2 7.9 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) Gag_spuma PF03276.9 gi|282164032|ref|YP_003356417.1| - 1.1 7.5 5.2 1.2 7.3 3.6 1.1 1 0 0 1 1 1 0 Spumavirus gag protein zf-RING_5 PF14634.1 gi|282164032|ref|YP_003356417.1| - 1.7 8.4 8.1 13 5.6 5.9 2.0 1 1 1 2 2 2 0 zinc-RING finger domain DUF2180 PF09947.4 gi|282164032|ref|YP_003356417.1| - 2.5 7.9 11.7 0.47 10.2 3.8 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) zf-C3HC4_4 PF15227.1 gi|282164032|ref|YP_003356417.1| - 2.8 7.8 7.1 15 5.5 0.1 2.5 1 1 1 2 2 2 0 zinc finger of C3HC4-type, RING zf-B_box PF00643.19 gi|282164033|ref|YP_003356418.1| - 2.5e-05 24.0 2.0 2.5e-05 24.0 1.4 2.1 2 0 0 2 2 2 1 B-box zinc finger TM2 PF05154.11 gi|282164033|ref|YP_003356418.1| - 0.00045 20.3 8.9 0.00045 20.3 6.1 2.7 1 1 1 2 2 2 1 TM2 domain DUF4512 PF14975.1 gi|282164033|ref|YP_003356418.1| - 0.01 16.6 0.1 0.01 16.6 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4512) Fer2_3 PF13085.1 gi|282164033|ref|YP_003356418.1| - 0.02 14.7 0.2 0.021 14.6 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FYVE PF01363.16 gi|282164033|ref|YP_003356418.1| - 0.1 12.4 6.4 3.7 7.5 4.5 2.2 1 1 0 1 1 1 0 FYVE zinc finger DUF2180 PF09947.4 gi|282164033|ref|YP_003356418.1| - 0.24 11.1 7.8 0.18 11.6 1.6 2.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) Siva PF05458.7 gi|282164033|ref|YP_003356418.1| - 0.55 9.7 5.7 0.76 9.3 3.9 1.2 1 0 0 1 1 1 0 Cd27 binding protein (Siva) zf-C2HC5 PF06221.8 gi|282164033|ref|YP_003356418.1| - 0.59 9.9 8.0 1.5 8.6 5.5 1.7 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-piccolo PF05715.8 gi|282164033|ref|YP_003356418.1| - 2 8.4 9.7 47 4.0 6.7 2.2 1 1 1 2 2 2 0 Piccolo Zn-finger Tic20 PF09685.5 gi|282164033|ref|YP_003356418.1| - 7.3 6.6 12.8 11 6.0 8.9 1.3 1 1 0 1 1 1 0 Tic20-like protein DUF4234 PF14018.1 gi|282164033|ref|YP_003356418.1| - 8.2 6.2 9.3 3.6e+02 0.9 4.9 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4234) TM2 PF05154.11 gi|282164034|ref|YP_003356419.1| - 0.00042 20.4 2.4 0.00042 20.4 1.7 2.5 2 1 0 2 2 2 1 TM2 domain DUF4234 PF14018.1 gi|282164034|ref|YP_003356419.1| - 0.0065 16.1 1.1 0.0065 16.1 0.8 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4234) DUF1282 PF06930.7 gi|282164034|ref|YP_003356419.1| - 0.084 12.5 9.3 0.094 12.3 5.7 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1282) PRA1 PF03208.14 gi|282164034|ref|YP_003356419.1| - 0.75 9.1 7.4 1 8.6 5.1 1.2 1 0 0 1 1 1 0 PRA1 family protein Yip1 PF04893.12 gi|282164034|ref|YP_003356419.1| - 4.6 6.7 20.2 0.34 10.3 3.1 2.1 1 1 1 2 2 2 0 Yip1 domain ABC2_membrane PF01061.19 gi|282164035|ref|YP_003356420.1| - 2.6e-35 121.5 16.8 2.6e-35 121.5 11.6 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|282164035|ref|YP_003356420.1| - 5e-13 48.8 16.3 5e-13 48.8 11.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|282164036|ref|YP_003356421.1| - 1.5e-31 109.4 0.0 2.1e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282164036|ref|YP_003356421.1| - 1.7e-17 64.2 0.0 4e-15 56.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|282164036|ref|YP_003356421.1| - 1.9e-05 25.0 0.0 3.6e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|282164036|ref|YP_003356421.1| - 0.0004 19.5 0.0 0.04 12.9 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|282164036|ref|YP_003356421.1| - 0.00073 19.9 0.0 0.00092 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|282164036|ref|YP_003356421.1| - 0.0064 16.3 0.0 0.015 15.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|282164036|ref|YP_003356421.1| - 0.025 14.7 0.0 0.58 10.3 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|282164036|ref|YP_003356421.1| - 0.037 13.5 0.5 0.07 12.6 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|282164036|ref|YP_003356421.1| - 0.043 13.2 0.2 1.7 8.0 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain SMC_N PF02463.14 gi|282164036|ref|YP_003356421.1| - 0.045 12.9 0.0 0.96 8.6 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|282164036|ref|YP_003356421.1| - 0.076 12.9 0.1 0.23 11.4 0.0 1.9 2 1 1 3 3 3 0 AAA ATPase domain AAA_22 PF13401.1 gi|282164036|ref|YP_003356421.1| - 0.098 12.7 0.1 0.42 10.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|282164036|ref|YP_003356421.1| - 0.11 13.0 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein cobW PF02492.14 gi|282164036|ref|YP_003356421.1| - 0.12 11.7 0.1 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|282164036|ref|YP_003356421.1| - 0.21 11.2 0.8 0.34 10.5 0.1 1.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 DeoC PF01791.4 gi|282164037|ref|YP_003356422.1| - 3.5e-47 160.6 0.1 4.1e-47 160.4 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|282164037|ref|YP_003356422.1| - 0.007 15.7 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family His_biosynth PF00977.16 gi|282164037|ref|YP_003356422.1| - 0.017 14.4 0.3 0.034 13.4 0.0 1.7 2 0 0 2 2 2 0 Histidine biosynthesis protein Pyridox_ox_2 PF12900.2 gi|282164038|ref|YP_003356423.1| - 3.4e-19 69.0 0.0 6.2e-19 68.2 0.0 1.5 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|282164038|ref|YP_003356423.1| - 7.9e-09 35.4 0.0 1.1e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF106 PF01956.11 gi|282164039|ref|YP_003356424.1| - 0.11 12.0 1.4 0.11 12.0 1.0 1.0 1 0 0 1 1 1 0 Integral membrane protein DUF106 Atg14 PF10186.4 gi|282164039|ref|YP_003356424.1| - 0.29 10.0 3.1 0.29 10.0 2.2 1.0 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 E1-E2_ATPase PF00122.15 gi|282164040|ref|YP_003356425.1| - 1.1e-54 184.8 1.1 1.1e-54 184.8 0.7 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|282164040|ref|YP_003356425.1| - 1.6e-46 159.4 2.4 2.7e-46 158.6 1.7 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|282164040|ref|YP_003356425.1| - 9.9e-22 76.8 0.7 5.1e-11 42.5 0.1 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|282164040|ref|YP_003356425.1| - 4.9e-16 59.4 0.0 1.4e-15 57.9 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|282164040|ref|YP_003356425.1| - 0.0021 17.6 1.9 0.017 14.7 1.0 2.6 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HTH_5 PF01022.15 gi|282164041|ref|YP_003356426.1| - 3.1e-20 71.5 0.1 4.5e-20 71.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|282164041|ref|YP_003356426.1| - 4.4e-11 42.4 0.0 6e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|282164041|ref|YP_003356426.1| - 0.00087 19.2 0.0 0.0014 18.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|282164041|ref|YP_003356426.1| - 0.0039 16.7 0.2 0.007 15.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|282164041|ref|YP_003356426.1| - 0.0045 16.6 0.0 0.0074 15.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|282164041|ref|YP_003356426.1| - 0.041 13.3 0.0 0.062 12.8 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_23 PF13384.1 gi|282164041|ref|YP_003356426.1| - 0.044 13.4 0.1 0.15 11.7 0.1 1.9 1 1 0 1 1 1 0 Homeodomain-like domain Arg_repressor PF01316.16 gi|282164041|ref|YP_003356426.1| - 0.045 13.2 0.1 0.088 12.3 0.0 1.4 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain HTH_27 PF13463.1 gi|282164041|ref|YP_003356426.1| - 0.046 14.0 0.0 0.12 12.7 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain YonK PF09642.5 gi|282164041|ref|YP_003356426.1| - 0.082 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 YonK protein HTH_1 PF00126.22 gi|282164041|ref|YP_003356426.1| - 0.1 12.3 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Cro PF09048.5 gi|282164041|ref|YP_003356426.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Cro DUF1945 PF09178.5 gi|282164041|ref|YP_003356426.1| - 0.13 12.1 0.0 0.49 10.3 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1945) TrmB PF01978.14 gi|282164041|ref|YP_003356426.1| - 0.14 11.8 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|282164042|ref|YP_003356427.1| - 0.00011 21.9 0.0 0.0002 21.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|282164042|ref|YP_003356427.1| - 0.0012 18.4 0.0 0.0023 17.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|282164042|ref|YP_003356427.1| - 0.0046 16.6 0.7 0.0075 16.0 0.1 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|282164042|ref|YP_003356427.1| - 0.0098 15.5 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|282164042|ref|YP_003356427.1| - 0.048 13.0 0.0 0.12 11.7 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|282164042|ref|YP_003356427.1| - 0.057 13.1 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|282164042|ref|YP_003356427.1| - 0.062 12.8 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF2101 PF09874.4 gi|282164042|ref|YP_003356427.1| - 0.24 10.8 7.2 0.36 10.2 5.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) NfeD PF01957.13 gi|282164042|ref|YP_003356427.1| - 1.4 9.0 8.0 0.11 12.6 1.5 1.9 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding ABC_tran PF00005.22 gi|282164043|ref|YP_003356428.1| - 1.1e-29 103.4 0.0 1.8e-29 102.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282164043|ref|YP_003356428.1| - 1.9e-14 54.3 0.5 2.2e-08 34.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain cobW PF02492.14 gi|282164043|ref|YP_003356428.1| - 0.0016 17.9 0.4 0.0033 16.8 0.1 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain DUF4162 PF13732.1 gi|282164043|ref|YP_003356428.1| - 0.0026 18.2 0.0 0.005 17.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA PF00004.24 gi|282164043|ref|YP_003356428.1| - 0.0033 17.6 0.0 0.044 13.9 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|282164043|ref|YP_003356428.1| - 0.0037 16.7 0.9 0.0064 15.9 0.2 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|282164043|ref|YP_003356428.1| - 0.011 14.8 0.0 0.67 8.9 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_16 PF13191.1 gi|282164043|ref|YP_003356428.1| - 0.014 15.4 0.8 0.049 13.6 0.2 2.1 1 1 0 2 2 2 0 AAA ATPase domain Miro PF08477.8 gi|282164043|ref|YP_003356428.1| - 0.015 15.8 0.0 0.31 11.5 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein AAA_14 PF13173.1 gi|282164043|ref|YP_003356428.1| - 0.015 15.2 0.1 4.3 7.2 0.0 3.0 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|282164043|ref|YP_003356428.1| - 0.019 14.6 0.1 0.3 10.7 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|282164043|ref|YP_003356428.1| - 0.032 14.1 0.4 0.046 13.6 0.3 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|282164043|ref|YP_003356428.1| - 0.063 13.5 0.5 0.13 12.5 0.2 1.6 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|282164043|ref|YP_003356428.1| - 0.071 13.2 0.2 0.26 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|282164043|ref|YP_003356428.1| - 0.083 12.1 0.1 3.4 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|282164043|ref|YP_003356428.1| - 0.11 12.1 0.1 0.22 11.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|282164043|ref|YP_003356428.1| - 0.11 12.1 0.1 0.61 9.7 0.0 2.1 2 0 0 2 2 2 0 NTPase UPF0079 PF02367.12 gi|282164043|ref|YP_003356428.1| - 0.15 11.6 0.6 0.38 10.4 0.3 1.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|282164043|ref|YP_003356428.1| - 0.16 12.1 0.0 9.6 6.4 0.0 2.3 2 0 0 2 2 2 0 RNA helicase Arch_ATPase PF01637.13 gi|282164043|ref|YP_003356428.1| - 0.2 11.2 0.8 3.8 7.1 0.5 2.2 1 1 1 2 2 2 0 Archaeal ATPase ABC2_membrane_4 PF12730.2 gi|282164044|ref|YP_003356429.1| - 4.3e-07 29.3 33.5 3.1e-06 26.5 23.5 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|282164044|ref|YP_003356429.1| - 5e-05 22.4 30.2 0.00015 20.9 21.0 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|282164044|ref|YP_003356429.1| - 9.9e-05 21.7 28.3 0.00019 20.8 19.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|282164044|ref|YP_003356429.1| - 0.00048 19.0 31.7 0.0085 14.9 22.1 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2873 PF11395.3 gi|282164044|ref|YP_003356429.1| - 0.067 12.7 4.1 0.67 9.5 0.1 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2873) DUF2530 PF10745.4 gi|282164044|ref|YP_003356429.1| - 8.9 6.3 7.1 1.9 8.5 1.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) AAA_14 PF13173.1 gi|282164045|ref|YP_003356430.1| - 1.8e-34 118.4 0.0 4e-34 117.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|282164045|ref|YP_003356430.1| - 3.9e-11 42.9 0.0 9.2e-11 41.7 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|282164045|ref|YP_003356430.1| - 5.8e-08 32.7 0.1 3.5e-05 23.6 0.0 2.4 1 1 1 2 2 2 2 Archaeal ATPase AAA_18 PF13238.1 gi|282164045|ref|YP_003356430.1| - 0.00056 20.2 0.0 0.002 18.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|282164045|ref|YP_003356430.1| - 0.0019 18.1 0.0 0.0034 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|282164045|ref|YP_003356430.1| - 0.0067 17.2 0.0 0.023 15.5 0.0 2.0 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|282164045|ref|YP_003356430.1| - 0.02 14.4 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MobB PF03205.9 gi|282164045|ref|YP_003356430.1| - 0.033 13.8 0.0 6.7 6.4 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|282164045|ref|YP_003356430.1| - 0.035 14.2 0.0 0.09 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|282164045|ref|YP_003356430.1| - 0.05 13.8 0.0 0.095 12.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|282164045|ref|YP_003356430.1| - 0.051 14.0 0.0 0.12 12.8 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein DAP3 PF10236.4 gi|282164045|ref|YP_003356430.1| - 0.091 11.6 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 TrmB PF01978.14 gi|282164046|ref|YP_003356431.1| - 8.7e-19 67.0 0.0 1.5e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PLDc_2 PF13091.1 gi|282164046|ref|YP_003356431.1| - 0.001 18.8 0.0 0.0019 17.9 0.0 1.5 1 0 0 1 1 1 1 PLD-like domain Regulator_TrmB PF11495.3 gi|282164046|ref|YP_003356431.1| - 0.0011 18.0 0.0 0.0015 17.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PadR PF03551.9 gi|282164046|ref|YP_003356431.1| - 0.0012 18.6 0.0 0.0026 17.4 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_IclR PF09339.5 gi|282164046|ref|YP_003356431.1| - 0.0024 17.4 0.6 0.012 15.2 0.0 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|282164046|ref|YP_003356431.1| - 0.003 17.6 0.1 0.0058 16.7 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_24 PF13412.1 gi|282164046|ref|YP_003356431.1| - 0.024 14.0 0.0 0.053 12.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|282164046|ref|YP_003356431.1| - 0.06 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MFS_1 PF07690.11 gi|282164047|ref|YP_003356432.1| - 3.1e-69 233.3 80.7 7.8e-54 182.7 35.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|282164047|ref|YP_003356432.1| - 1.1e-08 34.0 42.0 1.2e-08 33.9 10.8 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|282164047|ref|YP_003356432.1| - 2.7e-08 32.6 46.6 0.00017 20.1 18.8 2.9 1 1 1 2 2 2 2 MFS/sugar transport protein DUF3918 PF13056.1 gi|282164047|ref|YP_003356432.1| - 0.3 10.4 0.1 0.3 10.4 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3918) FMN_red PF03358.10 gi|282164048|ref|YP_003356433.1| - 5.7e-25 87.5 0.0 1.8e-24 86.0 0.0 1.6 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|282164048|ref|YP_003356433.1| - 5.5e-15 55.4 0.0 7.6e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Aldo_ket_red PF00248.16 gi|282164049|ref|YP_003356434.1| - 1e-41 142.6 0.0 1.6e-41 141.9 0.0 1.3 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|282164049|ref|YP_003356434.1| - 1.2e-11 44.7 6.3 2.5e-11 43.7 4.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282164049|ref|YP_003356434.1| - 6.2e-10 39.2 7.6 1.2e-09 38.2 5.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282164049|ref|YP_003356434.1| - 5.2e-08 33.1 1.2 0.00012 22.4 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282164049|ref|YP_003356434.1| - 9.5e-08 31.9 6.3 1.9e-07 31.0 4.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282164049|ref|YP_003356434.1| - 0.001 19.7 3.8 0.13 13.0 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|282164049|ref|YP_003356434.1| - 0.0013 18.3 2.5 0.004 16.7 0.1 2.2 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_10 PF13237.1 gi|282164049|ref|YP_003356434.1| - 0.0048 16.6 13.4 0.018 14.8 1.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282164049|ref|YP_003356434.1| - 0.0071 15.9 1.8 0.0071 15.9 1.3 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282164049|ref|YP_003356434.1| - 0.01 15.6 6.5 0.73 9.7 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282164049|ref|YP_003356434.1| - 0.018 14.8 2.2 0.018 14.8 1.5 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282164049|ref|YP_003356434.1| - 0.02 14.7 12.1 0.063 13.2 1.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|282164049|ref|YP_003356434.1| - 0.13 12.6 14.0 0.35 11.3 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282164049|ref|YP_003356434.1| - 0.46 10.8 14.5 0.26 11.6 2.1 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Flavodoxin_4 PF12682.2 gi|282164050|ref|YP_003356435.1| - 2.2e-51 173.2 0.0 2.5e-51 173.0 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|282164050|ref|YP_003356435.1| - 4.6e-09 35.8 0.0 0.0005 19.5 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|282164050|ref|YP_003356435.1| - 5.4e-06 26.4 0.0 0.0015 18.5 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain FMN_red PF03358.10 gi|282164050|ref|YP_003356435.1| - 0.0034 16.8 0.0 0.0043 16.5 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|282164050|ref|YP_003356435.1| - 0.093 12.2 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin-like fold HxlR PF01638.12 gi|282164051|ref|YP_003356436.1| - 1.3e-35 120.8 0.2 1.6e-35 120.5 0.2 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.17 gi|282164051|ref|YP_003356436.1| - 0.00041 19.9 0.1 0.00073 19.1 0.1 1.4 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|282164051|ref|YP_003356436.1| - 0.00045 19.9 0.2 0.00077 19.1 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|282164051|ref|YP_003356436.1| - 0.00084 19.3 0.0 0.0012 18.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|282164051|ref|YP_003356436.1| - 0.0021 17.8 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|282164051|ref|YP_003356436.1| - 0.006 16.3 0.0 0.018 14.8 0.0 1.7 1 1 1 2 2 2 1 Winged helix-turn-helix HTH_12 PF08461.5 gi|282164051|ref|YP_003356436.1| - 0.0063 16.2 0.0 0.015 15.0 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain DUF505 PF04458.7 gi|282164051|ref|YP_003356436.1| - 0.014 13.5 0.0 0.016 13.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_5 PF01022.15 gi|282164051|ref|YP_003356436.1| - 0.094 12.3 0.0 0.45 10.2 0.0 2.0 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.7 gi|282164051|ref|YP_003356436.1| - 0.15 11.9 0.0 0.61 9.9 0.0 1.9 1 1 1 2 2 2 0 B-block binding subunit of TFIIIC DUF488 PF04343.8 gi|282164053|ref|YP_003356438.1| - 0.028 14.7 0.0 0.036 14.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF488 Flavodoxin_3 PF12641.2 gi|282164054|ref|YP_003356439.1| - 2e-17 63.0 0.1 3.7e-16 58.9 0.0 2.1 2 0 0 2 2 2 1 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|282164054|ref|YP_003356439.1| - 5.4e-10 39.4 0.0 6.5e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|282164054|ref|YP_003356439.1| - 2.8e-06 26.7 0.0 0.014 14.7 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_1 PF00258.20 gi|282164054|ref|YP_003356439.1| - 8.3e-05 22.6 0.7 0.00049 20.1 0.5 2.0 1 1 0 1 1 1 1 Flavodoxin DUF3186 PF11382.3 gi|282164054|ref|YP_003356439.1| - 0.0079 15.3 0.0 0.0094 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3186) RNB PF00773.14 gi|282164055|ref|YP_003356440.1| - 2.2e-65 221.1 0.0 2.6e-65 220.8 0.0 1.1 1 0 0 1 1 1 1 RNB domain S1 PF00575.18 gi|282164055|ref|YP_003356440.1| - 0.00019 21.4 0.5 0.041 13.9 0.0 3.6 3 1 0 3 3 3 1 S1 RNA binding domain Phage_tail_L PF05100.7 gi|282164055|ref|YP_003356440.1| - 0.048 12.7 0.0 0.083 12.0 0.0 1.3 1 0 0 1 1 1 0 Phage minor tail protein L Lactamase_B PF00753.22 gi|282164056|ref|YP_003356441.1| - 1.4e-19 70.4 0.0 1.7e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|282164056|ref|YP_003356441.1| - 4.6e-06 26.3 0.0 5.8e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|282164056|ref|YP_003356441.1| - 0.014 15.1 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain PAS_4 PF08448.5 gi|282164057|ref|YP_003356442.1| - 2.1e-27 95.3 0.0 9.1e-20 70.7 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|282164057|ref|YP_003356442.1| - 1e-22 80.4 0.2 2.5e-11 43.8 0.0 3.4 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.21 gi|282164057|ref|YP_003356442.1| - 4.8e-19 68.1 0.0 9.6e-19 67.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|282164057|ref|YP_003356442.1| - 7.7e-18 64.3 0.3 1e-08 34.9 0.0 3.3 3 1 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|282164057|ref|YP_003356442.1| - 6.3e-17 61.4 0.1 1.4e-13 50.7 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|282164057|ref|YP_003356442.1| - 5.4e-14 51.4 0.6 1.9e-07 30.7 0.0 3.4 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.2 gi|282164057|ref|YP_003356442.1| - 0.00064 19.7 0.8 0.48 10.4 0.0 3.6 2 2 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|282164057|ref|YP_003356442.1| - 0.0015 18.2 0.0 0.0032 17.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|282164057|ref|YP_003356442.1| - 0.0027 17.6 0.3 0.0091 15.9 0.3 1.8 2 0 0 2 2 2 1 PAS domain EBP PF05241.7 gi|282164057|ref|YP_003356442.1| - 0.0039 16.2 0.0 0.0062 15.5 0.0 1.2 1 0 0 1 1 1 1 Emopamil binding protein HATPase_c_5 PF14501.1 gi|282164057|ref|YP_003356442.1| - 0.0072 16.0 0.0 0.021 14.4 0.0 1.8 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|282164057|ref|YP_003356442.1| - 0.012 15.3 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1283 PF06932.6 gi|282164057|ref|YP_003356442.1| - 0.13 12.3 0.4 0.32 11.0 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1283) HATPase_c PF02518.21 gi|282164058|ref|YP_003356443.1| - 8.7e-22 76.9 0.0 1.9e-21 75.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|282164058|ref|YP_003356443.1| - 1.7e-12 47.2 0.1 4.7e-12 45.8 0.0 1.8 1 0 0 1 1 1 1 PAS fold Cache_1 PF02743.13 gi|282164058|ref|YP_003356443.1| - 5.4e-09 35.4 1.0 5.4e-09 35.4 0.7 2.1 2 0 0 2 2 2 1 Cache domain HAMP PF00672.20 gi|282164058|ref|YP_003356443.1| - 7.6e-09 35.6 0.0 7.6e-09 35.6 0.0 2.7 3 0 0 3 3 2 1 HAMP domain Cache_3 PF14827.1 gi|282164058|ref|YP_003356443.1| - 7.8e-09 35.4 2.0 9.3e-07 28.7 0.1 2.6 1 1 1 2 2 2 2 Sensory domain of two-component sensor kinase PAS_9 PF13426.1 gi|282164058|ref|YP_003356443.1| - 2.6e-05 24.5 0.1 0.0011 19.2 0.0 3.3 3 0 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.1 gi|282164058|ref|YP_003356443.1| - 0.0002 21.1 0.1 0.00054 19.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282164058|ref|YP_003356443.1| - 0.0033 17.0 0.0 0.0099 15.5 0.0 1.8 1 0 0 1 1 1 1 GHKL domain PAS_4 PF08448.5 gi|282164058|ref|YP_003356443.1| - 0.0034 17.3 0.1 0.075 13.0 0.0 2.9 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|282164058|ref|YP_003356443.1| - 0.0085 16.0 0.2 0.028 14.4 0.1 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|282164058|ref|YP_003356443.1| - 0.0093 15.7 0.0 0.027 14.2 0.0 1.8 1 0 0 1 1 1 1 PAS fold H_kinase_N PF12282.3 gi|282164058|ref|YP_003356443.1| - 0.32 10.5 2.2 0.47 10.0 0.0 2.3 2 0 0 2 2 2 0 Signal transduction histidine kinase Fer4 PF00037.22 gi|282164059|ref|YP_003356444.1| - 7e-09 34.9 15.1 1e-05 24.9 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|282164059|ref|YP_003356444.1| - 2.1e-08 34.2 12.5 5.7e-08 32.9 8.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282164059|ref|YP_003356444.1| - 2.6e-07 30.8 13.9 2e-06 28.1 9.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282164059|ref|YP_003356444.1| - 4.4e-07 29.6 12.7 1.4e-06 28.0 9.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282164059|ref|YP_003356444.1| - 5.1e-07 30.3 10.1 0.00043 20.9 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|282164059|ref|YP_003356444.1| - 5.2e-07 29.4 8.7 9.8e-07 28.5 6.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282164059|ref|YP_003356444.1| - 3.9e-06 27.1 7.1 0.0075 16.6 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282164059|ref|YP_003356444.1| - 8e-06 25.5 15.6 0.00091 18.9 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|282164059|ref|YP_003356444.1| - 2.2e-05 24.3 16.0 0.016 15.4 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|282164059|ref|YP_003356444.1| - 3.5e-05 23.7 12.5 0.00011 22.1 8.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282164059|ref|YP_003356444.1| - 0.00012 21.8 13.8 0.0036 17.1 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|282164059|ref|YP_003356444.1| - 0.00023 21.5 17.9 0.073 13.6 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|282164059|ref|YP_003356444.1| - 0.0019 18.4 8.9 0.09 13.1 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Flavodoxin_5 PF12724.2 gi|282164059|ref|YP_003356444.1| - 0.12 12.4 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain Fer4_11 PF13247.1 gi|282164059|ref|YP_003356444.1| - 0.43 10.5 5.5 1.3 8.9 3.8 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282164059|ref|YP_003356444.1| - 1.2 9.7 12.7 4.6 7.8 0.6 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|282164059|ref|YP_003356444.1| - 2.9 8.3 13.5 4.5 7.7 2.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain MFS_1 PF07690.11 gi|282164062|ref|YP_003356447.1| - 1.1e-56 192.1 45.5 1.1e-56 192.1 31.5 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|282164062|ref|YP_003356447.1| - 1.8e-10 39.9 16.7 1.8e-10 39.9 11.6 2.9 2 1 1 3 3 3 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|282164062|ref|YP_003356447.1| - 2.1e-10 39.6 43.6 5.8e-08 31.5 14.0 3.2 1 1 2 3 3 3 3 MFS/sugar transport protein MFS_3 PF05977.8 gi|282164062|ref|YP_003356447.1| - 2e-07 29.5 4.4 2e-07 29.5 3.0 2.5 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.2 gi|282164062|ref|YP_003356447.1| - 3.7e-05 23.4 0.3 3.7e-05 23.4 0.2 4.2 4 0 0 4 4 4 1 MFS_1 like family Peptidase_M29 PF02073.10 gi|282164063|ref|YP_003356448.1| - 5.2e-22 78.1 0.2 8.6e-18 64.2 0.0 2.4 2 1 0 2 2 2 2 Thermophilic metalloprotease (M29) MS_channel PF00924.13 gi|282164064|ref|YP_003356449.1| - 6.1e-39 133.4 0.8 6.1e-39 133.4 0.6 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel TrbC PF04956.8 gi|282164064|ref|YP_003356449.1| - 0.73 9.8 8.2 0.35 10.9 2.6 2.5 1 1 1 2 2 2 0 TrbC/VIRB2 family Flp_Fap PF04964.9 gi|282164064|ref|YP_003356449.1| - 3.1 7.4 6.8 12 5.5 0.4 2.6 2 0 0 2 2 2 0 Flp/Fap pilin component HEAT_2 PF13646.1 gi|282164065|ref|YP_003356450.1| - 1.1e-19 70.5 1.0 6e-10 39.2 0.5 2.1 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.11 gi|282164065|ref|YP_003356450.1| - 1.1e-06 28.4 0.2 0.00015 21.8 0.2 3.2 3 0 0 3 3 3 1 PBS lyase HEAT-like repeat DUF2189 PF09955.4 gi|282164065|ref|YP_003356450.1| - 0.00056 19.8 3.3 0.0011 18.9 2.3 1.4 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2189) TM2 PF05154.11 gi|282164065|ref|YP_003356450.1| - 0.0034 17.5 2.8 0.0034 17.5 1.9 2.4 2 1 0 2 2 2 1 TM2 domain Arm PF00514.18 gi|282164065|ref|YP_003356450.1| - 0.077 12.8 0.1 4.5 7.2 0.0 2.5 1 1 1 2 2 2 0 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.1 gi|282164065|ref|YP_003356450.1| - 0.084 13.3 0.1 5 7.7 0.0 2.9 2 1 0 2 2 2 0 HEAT-like repeat DUF4234 PF14018.1 gi|282164065|ref|YP_003356450.1| - 3.3 7.5 9.3 0.12 12.0 0.4 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4234) FtsZ_C PF12327.3 gi|282164066|ref|YP_003356451.1| - 7.1e-33 112.5 2.3 8.9e-33 112.2 0.1 2.3 2 1 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|282164066|ref|YP_003356451.1| - 6e-31 107.9 1.1 4e-30 105.2 0.8 2.0 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|282164066|ref|YP_003356451.1| - 0.0053 16.5 0.0 0.027 14.3 0.0 2.0 2 0 0 2 2 2 1 ThiF family Glucos_trans_II PF14264.1 gi|282164067|ref|YP_003356452.1| - 0.0016 17.5 3.9 0.0019 17.2 2.7 1.0 1 0 0 1 1 1 1 Glucosyl transferase GtrII Phage_integrase PF00589.17 gi|282164068|ref|YP_003356453.1| - 1.9e-27 96.0 0.0 3e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family DUF2194 PF09960.4 gi|282164069|ref|YP_003356454.1| - 0.0037 15.3 0.7 0.0046 15.0 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2194) DUF3296 PF11726.3 gi|282164069|ref|YP_003356454.1| - 0.013 15.0 3.1 0.22 11.0 2.2 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3296) Rad50_zn_hook PF04423.9 gi|282164069|ref|YP_003356454.1| - 1.9 8.0 3.7 24 4.4 0.2 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif FYVE PF01363.16 gi|282164070|ref|YP_003356455.1| - 0.0092 15.8 0.3 0.011 15.5 0.2 1.2 1 0 0 1 1 1 1 FYVE zinc finger zf-Mss51 PF13824.1 gi|282164070|ref|YP_003356455.1| - 0.02 14.7 2.1 0.027 14.3 1.4 1.3 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-AN1 PF01428.11 gi|282164070|ref|YP_003356455.1| - 0.033 14.0 2.5 0.056 13.3 1.8 1.4 1 0 0 1 1 1 0 AN1-like Zinc finger zf-RING_5 PF14634.1 gi|282164070|ref|YP_003356455.1| - 0.042 13.5 1.6 0.061 13.0 1.1 1.4 1 0 0 1 1 1 0 zinc-RING finger domain zf-B_box PF00643.19 gi|282164070|ref|YP_003356455.1| - 0.076 12.9 5.2 0.31 10.9 3.6 1.9 1 1 0 1 1 1 0 B-box zinc finger zinc-ribbons_6 PF07191.7 gi|282164070|ref|YP_003356455.1| - 0.12 12.1 2.1 0.27 11.0 1.4 1.6 1 1 0 1 1 1 0 zinc-ribbons RecR PF02132.10 gi|282164070|ref|YP_003356455.1| - 0.27 10.6 2.5 1.6 8.2 0.4 2.6 3 0 0 3 3 3 0 RecR protein HXXEE PF13787.1 gi|282164071|ref|YP_003356456.1| - 6.2e-22 78.1 4.8 6.2e-22 78.1 3.3 2.4 2 1 1 3 3 3 1 Protein of unknown function with HXXEE motif HeH PF12949.2 gi|282164072|ref|YP_003356457.1| - 9.4e-06 25.0 0.1 2.1e-05 23.9 0.1 1.6 1 0 0 1 1 1 1 HeH/LEM domain SAP PF02037.22 gi|282164072|ref|YP_003356457.1| - 0.059 12.8 0.1 0.22 11.0 0.0 2.0 2 0 0 2 2 2 0 SAP domain DUF3837 PF12939.2 gi|282164072|ref|YP_003356457.1| - 0.11 12.5 0.1 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3837) MscL PF01741.13 gi|282164073|ref|YP_003356458.1| - 1.1e-19 70.8 8.3 1.2e-19 70.7 5.7 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL Xan_ur_permease PF00860.15 gi|282164073|ref|YP_003356458.1| - 0.0032 16.0 1.9 0.0039 15.7 1.4 1.2 1 0 0 1 1 1 1 Permease family Rnf-Nqr PF02508.9 gi|282164073|ref|YP_003356458.1| - 0.03 13.8 2.6 0.038 13.5 1.8 1.1 1 0 0 1 1 1 0 Rnf-Nqr subunit, membrane protein IlvGEDA_leader PF08046.6 gi|282164073|ref|YP_003356458.1| - 0.061 12.4 1.3 0.061 12.4 0.9 1.7 2 0 0 2 2 2 0 IlvGEDA operon leader peptide Holin_BlyA PF05102.7 gi|282164073|ref|YP_003356458.1| - 0.066 12.9 3.2 3 7.6 0.3 2.2 2 0 0 2 2 2 0 holin, BlyA family DUF2976 PF11190.3 gi|282164073|ref|YP_003356458.1| - 1.5 8.3 6.3 0.63 9.5 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) Fumarate_red_D PF02313.12 gi|282164073|ref|YP_003356458.1| - 2.6 7.9 6.1 3.4 7.5 4.2 1.2 1 0 0 1 1 1 0 Fumarate reductase subunit D Colicin_V PF02674.11 gi|282164073|ref|YP_003356458.1| - 5.9 6.7 11.6 59 3.4 8.2 1.9 1 1 0 1 1 1 0 Colicin V production protein Fun_ATP-synt_8 PF05933.8 gi|282164073|ref|YP_003356458.1| - 9.1 6.3 6.9 3.4 7.7 1.6 2.1 2 0 0 2 2 2 0 Fungal ATP synthase protein 8 (A6L) Diphthamide_syn PF01866.12 gi|282164074|ref|YP_003356459.1| - 1.9e-97 326.2 0.0 2.1e-97 326.0 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Bac_chlorC PF02043.12 gi|282164075|ref|YP_003356460.1| - 0.065 13.0 0.0 0.63 9.8 0.0 2.0 2 0 0 2 2 2 0 Bacteriochlorophyll C binding protein CarboxypepD_reg PF13620.1 gi|282164076|ref|YP_003356461.1| - 0.092 12.8 0.2 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain DUF1180 PF06679.7 gi|282164076|ref|YP_003356461.1| - 0.26 11.1 3.1 0.53 10.1 2.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) DUF2185 PF09951.4 gi|282164077|ref|YP_003356462.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2185) tRNA_int_endo PF01974.12 gi|282164078|ref|YP_003356463.1| - 3.7e-46 154.8 0.5 5.5e-23 80.5 0.1 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|282164078|ref|YP_003356463.1| - 1.1e-35 121.0 4.4 5.5e-18 64.2 0.5 2.8 3 0 0 3 3 3 2 tRNA intron endonuclease, N-terminal domain tRNA-synt_1b PF00579.20 gi|282164079|ref|YP_003356464.1| - 3.5e-24 85.4 0.0 6.5e-24 84.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.15 gi|282164080|ref|YP_003356465.1| - 3.8e-82 275.2 0.0 4.8e-82 274.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|282164080|ref|YP_003356465.1| - 6.5e-05 21.8 0.6 0.03 13.1 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|282164080|ref|YP_003356465.1| - 0.00061 19.4 0.2 0.0024 17.4 0.2 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF2582 PF10771.4 gi|282164080|ref|YP_003356465.1| - 0.0042 16.8 0.0 0.12 12.2 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2582) HTH_45 PF14947.1 gi|282164080|ref|YP_003356465.1| - 0.18 11.6 0.9 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix B5 PF03484.10 gi|282164081|ref|YP_003356466.1| - 1.2e-17 63.5 0.3 6.2e-14 51.5 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|282164081|ref|YP_003356466.1| - 1.2e-13 50.8 0.0 1.9e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain Flavodoxin_1 PF00258.20 gi|282164082|ref|YP_003356467.1| - 1.7e-13 50.8 0.0 2.4e-13 50.2 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|282164082|ref|YP_003356467.1| - 1.4e-07 31.5 0.0 1.6e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|282164082|ref|YP_003356467.1| - 3.2e-07 29.9 0.0 5.5e-05 22.7 0.0 2.1 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.2 gi|282164082|ref|YP_003356467.1| - 5.4e-06 25.9 0.0 8.4e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|282164082|ref|YP_003356467.1| - 0.021 14.1 0.0 0.085 12.2 0.0 2.0 1 1 0 1 1 1 0 Flavodoxin HATPase_c PF02518.21 gi|282164083|ref|YP_003356468.1| - 9.1e-21 73.6 0.0 2.4e-20 72.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|282164083|ref|YP_003356468.1| - 1.4e-16 60.2 0.1 7.4e-12 45.0 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|282164083|ref|YP_003356468.1| - 2.3e-16 60.0 0.0 1.3e-10 41.5 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.1 gi|282164083|ref|YP_003356468.1| - 7.6e-10 38.2 0.0 5.3e-06 26.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|282164083|ref|YP_003356468.1| - 1.6e-09 37.7 0.0 6.2e-09 35.8 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|282164083|ref|YP_003356468.1| - 5.3e-09 36.0 0.0 0.00041 20.3 0.0 3.4 2 2 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|282164083|ref|YP_003356468.1| - 9.8e-05 22.1 0.0 0.00021 21.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|282164083|ref|YP_003356468.1| - 0.00016 21.3 0.0 0.00037 20.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PRESAN PF09687.5 gi|282164083|ref|YP_003356468.1| - 0.005 16.8 1.8 0.14 12.2 0.6 3.0 3 0 0 3 3 3 1 Plasmodium RESA N-terminal HrpE PF06188.7 gi|282164083|ref|YP_003356468.1| - 0.044 13.5 0.1 0.09 12.5 0.1 1.5 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Flavodoxin_1 PF00258.20 gi|282164084|ref|YP_003356469.1| - 8.6e-16 58.2 0.1 1e-15 57.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|282164084|ref|YP_003356469.1| - 2.1e-09 37.5 0.0 2.4e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|282164084|ref|YP_003356469.1| - 1.9e-08 33.9 0.1 4e-06 26.4 0.1 2.1 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|282164084|ref|YP_003356469.1| - 3.5e-07 29.7 0.1 0.0049 16.2 0.0 2.3 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_3 PF12641.2 gi|282164084|ref|YP_003356469.1| - 1.8e-06 27.4 0.0 2.6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain Peripla_BP_6 PF13458.1 gi|282164084|ref|YP_003356469.1| - 0.018 14.4 0.1 0.4 9.9 0.0 1.8 1 1 1 2 2 2 0 Periplasmic binding protein Flavodoxin_2 PF02525.12 gi|282164084|ref|YP_003356469.1| - 0.019 14.4 0.0 0.26 10.7 0.0 2.5 1 1 0 1 1 1 0 Flavodoxin-like fold Glyco_hydro_108 PF05838.7 gi|282164084|ref|YP_003356469.1| - 0.035 14.2 0.0 0.073 13.1 0.0 1.6 1 0 0 1 1 1 0 Glycosyl hydrolase 108 LSM PF01423.17 gi|282164085|ref|YP_003356470.1| - 8.5e-15 54.0 0.9 9.5e-15 53.9 0.6 1.0 1 0 0 1 1 1 1 LSM domain Turandot PF07240.6 gi|282164085|ref|YP_003356470.1| - 0.11 12.0 0.0 0.12 11.8 0.0 1.3 1 1 0 1 1 1 0 Stress-inducible humoral factor Turandot B-block_TFIIIC PF04182.7 gi|282164086|ref|YP_003356471.1| - 5.8e-05 22.8 0.1 9e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|282164086|ref|YP_003356471.1| - 0.0029 17.2 0.0 0.0046 16.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|282164086|ref|YP_003356471.1| - 0.029 13.7 0.2 0.04 13.2 0.2 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|282164086|ref|YP_003356471.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF87 PF01935.12 gi|282164087|ref|YP_003356472.1| - 7.6e-38 130.5 0.2 2.4e-37 128.9 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|282164087|ref|YP_003356472.1| - 2.8e-19 69.6 0.1 2.4e-17 63.3 0.1 2.2 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|282164087|ref|YP_003356472.1| - 8e-07 27.7 0.0 0.00026 19.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|282164087|ref|YP_003356472.1| - 5.7e-06 25.9 0.1 4.4e-05 23.0 0.0 2.4 3 1 0 3 3 3 1 Zonular occludens toxin (Zot) TrwB_AAD_bind PF10412.4 gi|282164087|ref|YP_003356472.1| - 1.2e-05 24.1 0.0 0.00098 17.8 0.0 2.4 2 1 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|282164087|ref|YP_003356472.1| - 0.00017 21.1 0.0 0.00065 19.2 0.0 1.8 2 0 0 2 2 2 1 FtsK/SpoIIIE family ResIII PF04851.10 gi|282164087|ref|YP_003356472.1| - 0.0011 18.8 0.1 0.01 15.6 0.1 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|282164087|ref|YP_003356472.1| - 0.003 17.0 0.1 2.1 7.8 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase T4SS-DNA_transf PF02534.9 gi|282164087|ref|YP_003356472.1| - 0.01 14.4 0.0 0.03 12.9 0.0 1.7 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer Helicase_RecD PF05127.9 gi|282164087|ref|YP_003356472.1| - 0.025 14.2 0.0 0.046 13.3 0.0 1.4 1 0 0 1 1 1 0 Helicase DUF3388 PF11868.3 gi|282164087|ref|YP_003356472.1| - 0.031 13.4 0.5 0.13 11.3 0.3 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3388) ArgK PF03308.11 gi|282164087|ref|YP_003356472.1| - 0.035 12.8 0.0 0.071 11.8 0.0 1.4 1 0 0 1 1 1 0 ArgK protein HAS-barrel PF09378.5 gi|282164088|ref|YP_003356473.1| - 0.0032 17.3 0.4 0.0047 16.8 0.3 1.4 1 0 0 1 1 1 1 HAS barrel domain DUF3099 PF11298.3 gi|282164090|ref|YP_003356475.1| - 0.0016 18.1 1.8 0.056 13.1 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3099) ODV-E18 PF10717.4 gi|282164090|ref|YP_003356475.1| - 0.0059 16.0 0.3 0.011 15.1 0.2 1.4 1 0 0 1 1 1 1 Occlusion-derived virus envelope protein ODV-E18 DUF2874 PF11396.3 gi|282164090|ref|YP_003356475.1| - 0.026 14.4 0.2 0.052 13.5 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2874) DUF2304 PF10066.4 gi|282164090|ref|YP_003356475.1| - 0.85 9.4 7.1 3.3 7.5 0.8 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) Tic20 PF09685.5 gi|282164090|ref|YP_003356475.1| - 1.6 8.7 9.6 3.9 7.5 0.7 2.2 2 0 0 2 2 2 0 Tic20-like protein Pox_P21 PF05313.7 gi|282164090|ref|YP_003356475.1| - 7 5.8 11.2 0.52 9.5 1.5 2.1 1 1 1 2 2 2 0 Poxvirus P21 membrane protein NurA PF09376.5 gi|282164091|ref|YP_003356476.1| - 2.6e-17 63.1 0.1 4.5e-17 62.3 0.0 1.4 2 0 0 2 2 2 1 NurA domain Glyco_hydro_9 PF00759.14 gi|282164091|ref|YP_003356476.1| - 0.09 11.6 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 9 SMC_N PF02463.14 gi|282164092|ref|YP_003356477.1| - 2.8e-19 69.2 14.9 1.1e-09 37.8 7.0 2.4 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|282164092|ref|YP_003356477.1| - 6.6e-11 42.9 53.4 0.00026 21.3 34.3 4.1 2 1 0 2 2 2 1 AAA domain AAA_21 PF13304.1 gi|282164092|ref|YP_003356477.1| - 1.5e-09 38.2 8.0 1.4e-06 28.4 0.0 3.2 3 0 0 3 3 3 2 AAA domain SbcCD_C PF13558.1 gi|282164092|ref|YP_003356477.1| - 3e-08 33.4 0.2 2e-07 30.8 0.0 2.2 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|282164092|ref|YP_003356477.1| - 3.6e-05 24.0 8.6 0.11 12.7 0.0 4.4 3 2 0 3 3 3 2 ABC transporter AAA_29 PF13555.1 gi|282164092|ref|YP_003356477.1| - 0.00028 20.3 0.0 0.00057 19.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|282164092|ref|YP_003356477.1| - 0.011 14.8 34.5 0.034 13.1 15.3 4.0 2 2 0 2 2 2 0 AAA ATPase domain Torsin PF06309.6 gi|282164092|ref|YP_003356477.1| - 0.063 13.1 0.1 0.24 11.2 0.0 2.1 2 0 0 2 2 2 0 Torsin NPV_P10 PF05531.7 gi|282164092|ref|YP_003356477.1| - 6.7 7.0 8.3 8.1 6.7 0.1 4.2 3 1 0 4 4 4 0 Nucleopolyhedrovirus P10 protein Metallophos PF00149.23 gi|282164093|ref|YP_003356478.1| - 2.2e-14 53.3 0.0 4.6e-14 52.2 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|282164093|ref|YP_003356478.1| - 1e-13 51.4 0.1 7.4e-13 48.6 0.0 2.0 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain HTH_45 PF14947.1 gi|282164094|ref|YP_003356479.1| - 0.0019 17.9 0.2 0.0043 16.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix PhoU_div PF01865.11 gi|282164094|ref|YP_003356479.1| - 0.02 14.1 0.1 0.026 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF47 Tropomyosin_1 PF12718.2 gi|282164094|ref|YP_003356479.1| - 0.056 13.2 0.7 0.085 12.7 0.5 1.4 1 0 0 1 1 1 0 Tropomyosin like DUF3151 PF11349.3 gi|282164094|ref|YP_003356479.1| - 0.076 13.0 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3151) CENP-Q PF13094.1 gi|282164094|ref|YP_003356479.1| - 0.17 11.9 1.2 0.28 11.1 0.2 1.7 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF4164 PF13747.1 gi|282164094|ref|YP_003356479.1| - 0.26 11.4 4.6 1.4 9.1 2.5 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Glyco_hydro_42M PF08532.5 gi|282164095|ref|YP_003356480.1| - 0.00017 20.7 0.0 0.00024 20.3 0.0 1.2 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain BPL_N PF09825.4 gi|282164095|ref|YP_003356480.1| - 0.026 13.3 0.0 0.2 10.4 0.0 2.0 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal HATPase_c PF02518.21 gi|282164096|ref|YP_003356481.1| - 2.9e-19 68.8 0.0 5.3e-19 67.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|282164096|ref|YP_003356481.1| - 4.7e-19 69.3 0.0 8.3e-19 68.5 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|282164096|ref|YP_003356481.1| - 0.00015 21.5 0.0 0.00039 20.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282164096|ref|YP_003356481.1| - 0.037 13.7 0.0 0.075 12.7 0.0 1.4 1 0 0 1 1 1 0 GHKL domain GAF PF01590.21 gi|282164096|ref|YP_003356481.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 GAF domain Lar_restr_allev PF14354.1 gi|282164097|ref|YP_003356482.1| - 0.0015 18.8 2.3 0.93 9.8 0.9 2.6 2 0 0 2 2 2 2 Restriction alleviation protein Lar CbiA PF01656.18 gi|282164097|ref|YP_003356482.1| - 0.033 13.5 0.1 6.2 6.1 0.0 2.2 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain UPF0547 PF10571.4 gi|282164097|ref|YP_003356482.1| - 0.21 11.2 2.6 14 5.4 0.3 2.7 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|282164097|ref|YP_003356482.1| - 0.68 9.9 4.5 16 5.5 0.0 3.1 3 0 0 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|282164097|ref|YP_003356482.1| - 0.69 9.2 4.3 11 5.4 0.2 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|282164097|ref|YP_003356482.1| - 2.7 7.8 6.0 30 4.5 0.0 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain FMN_red PF03358.10 gi|282164098|ref|YP_003356483.1| - 7.6e-35 119.6 0.0 1e-34 119.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|282164098|ref|YP_003356483.1| - 2.4e-09 36.9 0.0 2.7e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|282164098|ref|YP_003356483.1| - 0.033 14.1 0.0 0.12 12.3 0.0 2.0 2 1 1 3 3 3 0 Flavodoxin domain Acetyltransf_1 PF00583.19 gi|282164099|ref|YP_003356484.1| - 6.8e-15 54.8 0.1 3.5e-14 52.5 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|282164099|ref|YP_003356484.1| - 2.7e-07 30.6 0.0 5.3e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|282164099|ref|YP_003356484.1| - 6.7e-07 29.4 0.0 1.5e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|282164099|ref|YP_003356484.1| - 4.3e-05 23.4 0.0 0.00011 22.1 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|282164099|ref|YP_003356484.1| - 0.0015 18.5 0.0 0.0024 17.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|282164099|ref|YP_003356484.1| - 0.0041 16.9 0.5 0.0082 16.0 0.0 1.7 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|282164099|ref|YP_003356484.1| - 0.077 12.7 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein AIRS PF00586.19 gi|282164100|ref|YP_003356485.1| - 6e-15 55.2 0.3 1e-14 54.5 0.2 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|282164100|ref|YP_003356485.1| - 8.8e-09 35.5 0.0 1.7e-08 34.6 0.0 1.5 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain zf-C4pol PF14260.1 gi|282164101|ref|YP_003356486.1| - 0.14 12.2 2.5 0.46 10.5 0.4 2.3 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta DUF4428 PF14471.1 gi|282164101|ref|YP_003356486.1| - 0.21 11.3 8.3 0.23 11.2 0.3 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4428) zf-RING_4 PF14570.1 gi|282164101|ref|YP_003356486.1| - 0.56 9.8 6.9 1.1 8.8 0.1 2.7 2 1 0 2 2 2 0 RING/Ubox like zinc-binding domain DZR PF12773.2 gi|282164101|ref|YP_003356486.1| - 0.8 9.5 11.2 1.7e+02 2.1 7.7 3.0 1 1 0 1 1 1 0 Double zinc ribbon FYVE PF01363.16 gi|282164101|ref|YP_003356486.1| - 0.91 9.4 6.2 8.8 6.3 4.3 2.5 1 1 0 1 1 1 0 FYVE zinc finger DUF4503 PF14951.1 gi|282164101|ref|YP_003356486.1| - 1.8 6.5 4.0 0.57 8.2 0.5 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4503) zf-BED PF02892.10 gi|282164101|ref|YP_003356486.1| - 1.9 8.3 5.3 4.5 7.1 0.1 2.6 2 1 1 3 3 3 0 BED zinc finger Cauli_DNA-bind PF03310.8 gi|282164102|ref|YP_003356487.1| - 0.059 13.2 0.3 0.72 9.7 0.2 2.1 1 1 0 1 1 1 0 Caulimovirus DNA-binding protein DUF4301 PF14134.1 gi|282164102|ref|YP_003356487.1| - 0.13 10.7 0.0 0.16 10.5 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4301) NTP_transf_2 PF01909.18 gi|282164103|ref|YP_003356488.1| - 2.3e-08 34.2 0.1 4.3e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_24 PF13412.1 gi|282164103|ref|YP_003356488.1| - 0.00017 20.9 0.1 0.00032 20.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|282164103|ref|YP_003356488.1| - 0.00029 20.4 0.0 0.00043 19.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|282164103|ref|YP_003356488.1| - 0.013 15.1 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.5 gi|282164103|ref|YP_003356488.1| - 0.015 14.9 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF294 PF03445.8 gi|282164103|ref|YP_003356488.1| - 0.02 14.4 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Rrf2 PF02082.15 gi|282164103|ref|YP_003356488.1| - 0.025 14.6 0.0 0.048 13.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.14 gi|282164103|ref|YP_003356488.1| - 0.027 14.1 0.1 0.078 12.6 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|282164103|ref|YP_003356488.1| - 0.047 14.0 0.0 0.13 12.5 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain DNA_pol_B PF00136.16 gi|282164104|ref|YP_003356489.1| - 6.1e-51 173.6 0.0 8.8e-51 173.1 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B PAS_9 PF13426.1 gi|282164105|ref|YP_003356490.1| - 1.3e-59 199.0 1.0 7.6e-13 48.7 0.0 5.3 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|282164105|ref|YP_003356490.1| - 8.1e-43 144.8 0.1 2.2e-12 46.7 0.0 6.0 5 1 0 5 5 5 5 PAS fold PAS_4 PF08448.5 gi|282164105|ref|YP_003356490.1| - 7e-38 129.0 0.0 9.1e-14 51.4 0.0 5.2 5 0 0 5 5 5 4 PAS fold PAS_8 PF13188.1 gi|282164105|ref|YP_003356490.1| - 6.7e-29 98.7 0.3 9.5e-07 28.4 0.0 5.4 5 0 0 5 5 5 4 PAS domain PAS_3 PF08447.6 gi|282164105|ref|YP_003356490.1| - 1.3e-27 95.6 0.3 2.1e-10 40.5 0.0 5.5 6 0 0 6 6 5 2 PAS fold PAS_7 PF12860.2 gi|282164105|ref|YP_003356490.1| - 1.4e-08 34.7 1.8 5.2e-05 23.2 0.0 5.5 4 3 0 4 4 4 1 PAS fold PAS_11 PF14598.1 gi|282164105|ref|YP_003356490.1| - 1e-06 28.6 0.0 2.2 8.2 0.0 4.9 5 1 0 5 5 5 2 PAS domain HTH_IclR PF09339.5 gi|282164105|ref|YP_003356490.1| - 0.00012 21.5 0.0 0.00027 20.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|282164105|ref|YP_003356490.1| - 0.00082 19.0 0.0 0.0023 17.6 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|282164105|ref|YP_003356490.1| - 0.0012 18.4 0.0 0.0027 17.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|282164105|ref|YP_003356490.1| - 0.0023 17.2 0.0 0.0067 15.7 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Mnd1 PF03962.10 gi|282164105|ref|YP_003356490.1| - 0.0029 17.3 6.5 1.7 8.2 0.0 2.7 2 1 0 2 2 2 2 Mnd1 family TBPIP PF07106.8 gi|282164105|ref|YP_003356490.1| - 0.0029 17.1 5.8 0.0067 15.9 0.0 2.9 3 0 0 3 3 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_45 PF14947.1 gi|282164105|ref|YP_003356490.1| - 0.012 15.4 0.0 0.043 13.6 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix FeoC PF09012.5 gi|282164105|ref|YP_003356490.1| - 0.019 14.6 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_20 PF12840.2 gi|282164105|ref|YP_003356490.1| - 0.031 14.0 0.0 0.093 12.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|282164105|ref|YP_003356490.1| - 0.043 13.4 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF977 PF06163.6 gi|282164105|ref|YP_003356490.1| - 0.053 13.2 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_5 PF01022.15 gi|282164105|ref|YP_003356490.1| - 0.067 12.8 0.0 0.27 10.9 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family RPA_C PF08784.6 gi|282164105|ref|YP_003356490.1| - 0.07 13.5 0.0 0.21 12.0 0.0 1.8 1 0 0 1 1 1 0 Replication protein A C terminal IncA PF04156.9 gi|282164105|ref|YP_003356490.1| - 6.6 6.2 8.2 0.41 10.2 1.7 1.8 3 0 0 3 3 2 0 IncA protein Ion_trans PF00520.26 gi|282164106|ref|YP_003356491.1| - 3.4e-21 75.4 4.6 3.4e-21 75.4 3.2 1.9 2 0 0 2 2 2 1 Ion transport protein Ion_trans_2 PF07885.11 gi|282164106|ref|YP_003356491.1| - 1.9e-10 40.2 1.7 1.9e-10 40.2 1.2 2.4 2 0 0 2 2 2 1 Ion channel DUF3165 PF11364.3 gi|282164106|ref|YP_003356491.1| - 0.025 14.7 2.7 0.025 14.7 1.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3165) Peptidase_S8 PF00082.17 gi|282164107|ref|YP_003356492.1| - 3.1e-71 239.8 7.0 4.3e-71 239.3 4.8 1.2 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.11 gi|282164107|ref|YP_003356492.1| - 6.3e-08 33.0 0.6 1.3e-07 32.1 0.0 1.8 2 0 0 2 2 2 1 Peptidase inhibitor I9 RHH_1 PF01402.16 gi|282164108|ref|YP_003356493.1| - 0.0066 16.2 0.0 0.0085 15.9 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Nitroreductase PF00881.19 gi|282164109|ref|YP_003356494.1| - 1.5e-29 102.9 0.0 1.9e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|282164109|ref|YP_003356494.1| - 0.0064 15.6 1.0 3.1 6.9 0.0 2.7 1 1 0 2 2 2 2 Putative TM nitroreductase Polysacc_synt_2 PF02719.10 gi|282164109|ref|YP_003356494.1| - 0.051 12.4 0.0 0.061 12.2 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein ABC_tran PF00005.22 gi|282164110|ref|YP_003356495.1| - 2.3e-18 66.8 0.0 3.7e-18 66.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282164110|ref|YP_003356495.1| - 4.3e-07 30.1 1.1 1.6e-06 28.3 0.7 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|282164110|ref|YP_003356495.1| - 5.1e-05 22.7 0.1 9.6e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|282164110|ref|YP_003356495.1| - 9.1e-05 21.7 0.2 0.00053 19.2 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|282164110|ref|YP_003356495.1| - 9.3e-05 22.8 0.0 0.00015 22.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|282164110|ref|YP_003356495.1| - 0.00034 20.9 0.0 0.001 19.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|282164110|ref|YP_003356495.1| - 0.00088 20.0 0.2 0.0022 18.7 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_15 PF13175.1 gi|282164110|ref|YP_003356495.1| - 0.0045 16.0 0.1 0.009 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|282164110|ref|YP_003356495.1| - 0.0081 15.8 0.1 0.05 13.3 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|282164110|ref|YP_003356495.1| - 0.0088 15.2 0.0 0.016 14.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|282164110|ref|YP_003356495.1| - 0.017 14.7 0.0 0.1 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|282164110|ref|YP_003356495.1| - 0.025 13.2 0.0 0.045 12.4 0.0 1.4 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MutS_V PF00488.16 gi|282164110|ref|YP_003356495.1| - 0.026 13.9 0.1 0.057 12.8 0.0 1.6 2 0 0 2 2 2 0 MutS domain V AAA_16 PF13191.1 gi|282164110|ref|YP_003356495.1| - 0.041 13.8 0.0 0.074 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.10 gi|282164110|ref|YP_003356495.1| - 0.047 13.3 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_30 PF13604.1 gi|282164110|ref|YP_003356495.1| - 0.06 12.9 0.0 0.15 11.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|282164110|ref|YP_003356495.1| - 0.065 12.3 0.0 0.15 11.1 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.1 gi|282164110|ref|YP_003356495.1| - 0.081 12.7 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|282164110|ref|YP_003356495.1| - 0.095 12.3 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase HAD PF12710.2 gi|282164110|ref|YP_003356495.1| - 0.12 12.5 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DS PF01916.12 gi|282164111|ref|YP_003356496.1| - 1.3e-85 287.1 0.0 1.5e-85 286.9 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase PPR_3 PF13812.1 gi|282164111|ref|YP_003356496.1| - 0.13 12.6 0.0 1.1 9.7 0.0 2.4 2 0 0 2 2 2 0 Pentatricopeptide repeat domain DUF1318 PF07027.7 gi|282164111|ref|YP_003356496.1| - 0.14 12.3 0.2 0.33 11.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1318) Yae1_N PF09811.4 gi|282164112|ref|YP_003356497.1| - 0.12 11.9 1.2 16 5.1 0.1 2.8 3 0 0 3 3 3 0 Essential protein Yae1, N terminal HATPase_c PF02518.21 gi|282164113|ref|YP_003356498.1| - 1.6e-15 56.8 0.0 3.2e-15 55.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|282164113|ref|YP_003356498.1| - 1.4e-13 51.0 0.0 2.6e-07 30.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|282164113|ref|YP_003356498.1| - 3.1e-11 43.2 0.0 1.8e-06 27.9 0.0 2.9 2 1 0 2 2 2 2 PAS fold PAS PF00989.19 gi|282164113|ref|YP_003356498.1| - 6.6e-11 41.9 0.0 0.00036 20.2 0.0 3.4 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|282164113|ref|YP_003356498.1| - 2.5e-06 27.1 0.1 0.036 13.9 0.0 2.9 2 1 1 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|282164113|ref|YP_003356498.1| - 2.3e-05 24.1 0.0 4.2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.1 gi|282164113|ref|YP_003356498.1| - 0.00019 21.6 0.0 0.00051 20.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|282164113|ref|YP_003356498.1| - 0.08 12.5 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheR PF01739.13 gi|282164114|ref|YP_003356499.1| - 7.9e-59 198.2 0.0 1.4e-58 197.4 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheB_methylest PF01339.12 gi|282164114|ref|YP_003356499.1| - 1.5e-55 187.4 0.0 2.9e-55 186.5 0.0 1.5 1 0 0 1 1 1 1 CheB methylesterase PAS_10 PF13596.1 gi|282164114|ref|YP_003356499.1| - 3.4e-28 97.9 0.8 6e-26 90.7 0.5 3.1 2 0 0 2 2 2 1 PAS domain CheR_N PF03705.10 gi|282164114|ref|YP_003356499.1| - 6.8e-13 47.7 0.0 1.4e-12 46.7 0.0 1.6 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain PAS_4 PF08448.5 gi|282164114|ref|YP_003356499.1| - 1.7e-09 37.7 0.0 0.01 15.8 0.0 4.0 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.1 gi|282164114|ref|YP_003356499.1| - 4.2e-07 30.2 0.2 0.016 15.6 0.1 3.4 3 0 0 3 3 2 2 PAS domain PAS PF00989.19 gi|282164114|ref|YP_003356499.1| - 5.1e-07 29.4 1.3 0.039 13.7 0.0 4.1 4 0 0 4 4 3 1 PAS fold OmpH PF03938.9 gi|282164114|ref|YP_003356499.1| - 0.00027 20.8 4.0 0.00027 20.8 2.8 1.9 2 0 0 2 2 1 1 Outer membrane protein (OmpH-like) Fez1 PF06818.10 gi|282164114|ref|YP_003356499.1| - 0.0012 18.9 7.6 0.0022 18.0 5.3 1.4 1 0 0 1 1 1 1 Fez1 DUF3450 PF11932.3 gi|282164114|ref|YP_003356499.1| - 0.0022 17.2 7.5 0.016 14.4 5.9 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3450) IncA PF04156.9 gi|282164114|ref|YP_003356499.1| - 0.0024 17.4 12.9 0.0061 16.1 8.5 1.9 2 0 0 2 2 2 1 IncA protein PAS_8 PF13188.1 gi|282164114|ref|YP_003356499.1| - 0.0028 17.4 0.1 0.037 13.9 0.0 2.9 3 0 0 3 3 2 1 PAS domain IL12 PF03039.9 gi|282164114|ref|YP_003356499.1| - 0.0029 16.7 2.7 0.0057 15.8 1.9 1.4 1 0 0 1 1 1 1 Interleukin-12 alpha subunit LMBR1 PF04791.11 gi|282164114|ref|YP_003356499.1| - 0.0042 15.7 3.1 0.006 15.2 2.1 1.2 1 0 0 1 1 1 1 LMBR1-like membrane protein CENP-F_leu_zip PF10473.4 gi|282164114|ref|YP_003356499.1| - 0.0071 16.2 16.7 0.017 15.0 11.6 1.6 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PAS_7 PF12860.2 gi|282164114|ref|YP_003356499.1| - 0.01 15.8 1.8 12 5.9 0.0 4.2 5 0 0 5 5 3 0 PAS fold APG6 PF04111.7 gi|282164114|ref|YP_003356499.1| - 0.021 13.8 13.0 0.0081 15.2 7.2 1.5 2 0 0 2 2 1 0 Autophagy protein Apg6 Methyltransf_12 PF08242.7 gi|282164114|ref|YP_003356499.1| - 0.025 15.0 0.0 0.25 11.8 0.0 2.7 1 1 0 1 1 1 0 Methyltransferase domain Atg14 PF10186.4 gi|282164114|ref|YP_003356499.1| - 0.028 13.3 8.4 0.047 12.6 5.8 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 ATG16 PF08614.6 gi|282164114|ref|YP_003356499.1| - 0.04 13.7 16.6 0.079 12.7 11.5 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF342 PF03961.8 gi|282164114|ref|YP_003356499.1| - 0.044 12.1 8.0 0.076 11.4 5.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Myosin_tail_1 PF01576.14 gi|282164114|ref|YP_003356499.1| - 0.048 11.4 16.7 0.084 10.5 11.6 1.3 1 0 0 1 1 1 0 Myosin tail UPF0242 PF06785.6 gi|282164114|ref|YP_003356499.1| - 0.048 12.3 3.9 0.078 11.6 2.7 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) HrpB7 PF09486.5 gi|282164114|ref|YP_003356499.1| - 0.065 13.1 8.2 0.6 10.0 0.0 3.2 2 1 1 3 3 3 0 Bacterial type III secretion protein (HrpB7) TBPIP PF07106.8 gi|282164114|ref|YP_003356499.1| - 0.066 12.7 10.7 0.25 10.8 7.4 2.0 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Spc7 PF08317.6 gi|282164114|ref|YP_003356499.1| - 0.077 11.6 14.9 0.026 13.1 8.3 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein Peptidase_C6 PF00851.13 gi|282164114|ref|YP_003356499.1| - 0.099 11.2 6.1 0.48 9.0 4.9 1.6 2 0 0 2 2 1 0 Helper component proteinase Methyltransf_25 PF13649.1 gi|282164114|ref|YP_003356499.1| - 0.13 12.6 0.0 0.97 9.8 0.0 2.6 1 1 0 1 1 1 0 Methyltransferase domain TPR_MLP1_2 PF07926.7 gi|282164114|ref|YP_003356499.1| - 0.16 11.7 20.4 0.03 14.0 11.3 1.9 2 0 0 2 2 1 0 TPR/MLP1/MLP2-like protein Syntaxin-6_N PF09177.6 gi|282164114|ref|YP_003356499.1| - 0.2 12.0 16.8 3.4 8.1 0.0 4.0 3 1 0 3 3 2 0 Syntaxin 6, N-terminal WXG100 PF06013.7 gi|282164114|ref|YP_003356499.1| - 0.24 11.4 7.7 0.61 10.1 4.2 2.5 1 1 0 1 1 1 0 Proteins of 100 residues with WXG Prominin PF05478.6 gi|282164114|ref|YP_003356499.1| - 0.32 8.4 7.8 0.7 7.3 5.4 1.5 1 0 0 1 1 1 0 Prominin Filament PF00038.16 gi|282164114|ref|YP_003356499.1| - 0.32 10.4 16.6 0.25 10.7 9.9 1.8 2 0 0 2 2 2 0 Intermediate filament protein ADIP PF11559.3 gi|282164114|ref|YP_003356499.1| - 0.37 10.6 15.4 1.1 9.1 10.7 1.8 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding IFT57 PF10498.4 gi|282164114|ref|YP_003356499.1| - 0.39 9.3 14.6 0.19 10.4 7.6 1.9 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Prefoldin_3 PF13758.1 gi|282164114|ref|YP_003356499.1| - 0.5 10.1 7.9 25 4.7 5.4 2.9 1 1 0 1 1 1 0 Prefoldin subunit MCC-bdg_PDZ PF10506.4 gi|282164114|ref|YP_003356499.1| - 0.77 9.6 12.3 3.1 7.7 3.9 2.9 1 1 1 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Lebercilin PF15619.1 gi|282164114|ref|YP_003356499.1| - 0.8 9.1 18.4 0.12 11.7 9.1 2.3 3 0 0 3 3 2 0 Ciliary protein causing Leber congenital amaurosis disease GAS PF13851.1 gi|282164114|ref|YP_003356499.1| - 0.88 8.7 18.0 1.3 8.1 9.6 2.3 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF4200 PF13863.1 gi|282164114|ref|YP_003356499.1| - 1.4 8.9 19.8 2.5 8.0 2.3 3.0 2 1 1 3 3 2 0 Domain of unknown function (DUF4200) DUF1664 PF07889.7 gi|282164114|ref|YP_003356499.1| - 1.6 8.5 10.0 0.41 10.4 3.9 2.3 2 0 0 2 2 1 0 Protein of unknown function (DUF1664) EMP24_GP25L PF01105.19 gi|282164114|ref|YP_003356499.1| - 2.1 8.0 10.2 0.51 10.0 3.3 2.5 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD Laminin_II PF06009.7 gi|282164114|ref|YP_003356499.1| - 2.3 7.9 13.9 2.3 7.9 7.1 2.7 1 1 0 2 2 2 0 Laminin Domain II GLE1 PF07817.8 gi|282164114|ref|YP_003356499.1| - 4.2 6.2 7.6 4.3 6.1 3.2 2.3 3 0 0 3 3 3 0 GLE1-like protein zf-C4H2 PF10146.4 gi|282164114|ref|YP_003356499.1| - 5.6 6.9 16.7 6.4 6.7 9.7 2.4 1 1 0 2 2 1 0 Zinc finger-containing protein Seryl_tRNA_N PF02403.17 gi|282164114|ref|YP_003356499.1| - 6.7 6.7 17.1 1.3 9.0 6.9 3.5 4 0 0 4 4 2 0 Seryl-tRNA synthetase N-terminal domain COG2 PF06148.6 gi|282164114|ref|YP_003356499.1| - 8.7 6.2 12.0 7 6.5 5.9 2.5 2 1 0 2 2 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DivIC PF04977.10 gi|282164114|ref|YP_003356499.1| - 9.7 5.7 9.4 7.3 6.1 2.7 2.7 1 1 1 2 2 2 0 Septum formation initiator DUF91 PF01939.11 gi|282164115|ref|YP_003356500.1| - 7.3e-65 218.3 0.2 8.1e-65 218.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 PDDEXK_4 PF14281.1 gi|282164115|ref|YP_003356500.1| - 0.00024 20.9 0.1 0.00033 20.5 0.1 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|282164115|ref|YP_003356500.1| - 0.00036 20.4 0.2 0.00082 19.3 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF83 DUF1703 PF08011.6 gi|282164115|ref|YP_003356500.1| - 0.00063 19.4 0.1 0.0023 17.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1703) UPF0102 PF02021.12 gi|282164115|ref|YP_003356500.1| - 0.0013 18.5 0.0 0.0042 16.9 0.0 1.8 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 DUF3883 PF13020.1 gi|282164115|ref|YP_003356500.1| - 0.025 14.2 0.4 0.47 10.2 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3883) PDDEXK_1 PF12705.2 gi|282164115|ref|YP_003356500.1| - 0.1 11.9 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Lysis_col PF02402.11 gi|282164116|ref|YP_003356501.1| - 0.053 13.1 0.3 0.096 12.2 0.2 1.4 1 0 0 1 1 1 0 Lysis protein NIDO PF06119.9 gi|282164116|ref|YP_003356501.1| - 0.53 11.0 5.1 2 9.1 0.6 2.3 1 1 1 2 2 2 0 Nidogen-like DUF4398 PF14346.1 gi|282164117|ref|YP_003356502.1| - 2.4e-24 85.3 30.2 2.1e-13 50.1 0.3 4.1 1 1 3 4 4 4 2 Domain of unknown function (DUF4398) DUF357 PF04010.8 gi|282164117|ref|YP_003356502.1| - 0.00028 20.5 7.5 0.78 9.4 0.1 3.5 3 0 0 3 3 3 3 Protein of unknown function (DUF357) TPR_2 PF07719.12 gi|282164117|ref|YP_003356502.1| - 0.065 13.1 0.1 0.065 13.1 0.1 3.9 3 1 1 4 4 4 0 Tetratricopeptide repeat SOR_SNZ PF01680.12 gi|282164118|ref|YP_003356503.1| - 3.3e-106 353.5 7.8 4.4e-106 353.1 5.4 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|282164118|ref|YP_003356503.1| - 4.1e-11 42.4 5.2 4.6e-08 32.4 0.2 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|282164118|ref|YP_003356503.1| - 7.4e-05 21.7 1.4 0.0091 14.9 0.1 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|282164118|ref|YP_003356503.1| - 0.0025 17.1 0.1 0.0052 16.0 0.0 1.6 1 1 0 1 1 1 1 PcrB family NMO PF03060.10 gi|282164118|ref|YP_003356503.1| - 0.0033 16.6 0.1 0.0033 16.6 0.1 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase Dus PF01207.12 gi|282164118|ref|YP_003356503.1| - 0.004 16.0 0.7 0.95 8.2 0.0 2.4 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|282164118|ref|YP_003356503.1| - 0.014 14.4 0.1 0.031 13.3 0.0 1.6 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|282164118|ref|YP_003356503.1| - 0.024 13.9 0.4 0.25 10.5 0.0 2.2 2 0 0 2 2 2 0 Histidine biosynthesis protein Mut7-C PF01927.11 gi|282164119|ref|YP_003356504.1| - 2.1e-41 141.2 0.3 2.5e-41 141.0 0.2 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain Tnp_zf-ribbon_2 PF13842.1 gi|282164119|ref|YP_003356504.1| - 0.055 13.8 0.4 2.2 8.7 0.0 2.1 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Pox_A3L PF05288.6 gi|282164119|ref|YP_003356504.1| - 0.098 12.4 0.1 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 Poxvirus A3L Protein FHIPEP PF00771.15 gi|282164119|ref|YP_003356504.1| - 0.11 10.7 0.0 0.15 10.3 0.0 1.1 1 0 0 1 1 1 0 FHIPEP family A2L_zn_ribbon PF08792.5 gi|282164119|ref|YP_003356504.1| - 0.16 11.4 0.9 10 5.6 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C2H2_4 PF13894.1 gi|282164119|ref|YP_003356504.1| - 0.19 12.1 0.7 12 6.4 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger MFS_1 PF07690.11 gi|282164120|ref|YP_003356505.1| - 2e-17 62.9 37.4 2e-17 62.9 25.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|282164120|ref|YP_003356505.1| - 2.4e-06 26.2 43.0 0.019 13.3 12.8 3.0 1 1 2 3 3 3 3 MFS/sugar transport protein HhH-GPD PF00730.20 gi|282164121|ref|YP_003356506.1| - 6.5e-22 77.8 0.0 1.3e-21 76.9 0.0 1.5 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|282164121|ref|YP_003356506.1| - 8e-08 31.5 0.4 3.2e-07 29.6 0.0 2.2 2 1 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|282164121|ref|YP_003356506.1| - 0.00047 20.2 0.0 0.1 12.7 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|282164121|ref|YP_003356506.1| - 0.0035 17.1 0.0 0.25 11.2 0.0 2.8 2 1 1 3 3 3 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|282164121|ref|YP_003356506.1| - 0.0037 17.3 0.2 0.012 15.7 0.1 2.0 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III DUF2400 PF09674.5 gi|282164121|ref|YP_003356506.1| - 0.058 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) Aminotran_1_2 PF00155.16 gi|282164122|ref|YP_003356507.1| - 5.5e-61 206.5 0.0 6.2e-61 206.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|282164122|ref|YP_003356507.1| - 2.9e-07 29.1 0.0 4.5e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|282164122|ref|YP_003356507.1| - 4.4e-06 25.6 0.0 1.3e-05 24.1 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|282164122|ref|YP_003356507.1| - 4.1e-05 22.8 0.0 6.4e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|282164122|ref|YP_003356507.1| - 0.054 12.5 0.0 0.086 11.8 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DMRL_synthase PF00885.14 gi|282164123|ref|YP_003356508.1| - 6.2e-35 119.9 0.4 7e-35 119.8 0.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Metallophos_3 PF14582.1 gi|282164123|ref|YP_003356508.1| - 0.022 13.9 0.7 0.9 8.6 0.2 2.7 2 1 1 3 3 3 0 Metallophosphoesterase, calcineurin superfamily DMRL_synthase PF00885.14 gi|282164124|ref|YP_003356509.1| - 1.4e-19 70.2 0.1 1.5e-19 70.0 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_5 PF00266.14 gi|282164125|ref|YP_003356510.1| - 2.2e-40 138.5 0.0 2.8e-40 138.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|282164125|ref|YP_003356510.1| - 0.00017 20.0 0.0 0.00021 19.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.16 gi|282164125|ref|YP_003356510.1| - 0.0012 17.7 0.1 0.13 11.0 0.0 2.4 3 0 0 3 3 3 2 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|282164125|ref|YP_003356510.1| - 0.0012 17.8 0.0 0.0021 17.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|282164125|ref|YP_003356510.1| - 0.0032 16.5 0.1 0.012 14.6 0.1 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family IncA PF04156.9 gi|282164126|ref|YP_003356511.1| - 8.8 5.8 6.6 0.57 9.7 0.2 1.8 2 0 0 2 2 2 0 IncA protein tRNA-synt_2d PF01409.15 gi|282164127|ref|YP_003356512.1| - 4.9e-52 176.5 0.0 4.9e-48 163.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|282164127|ref|YP_003356512.1| - 5.7e-05 22.7 0.0 0.00011 21.8 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Endonuclease_5 PF04493.9 gi|282164128|ref|YP_003356513.1| - 5e-51 172.9 0.0 6.6e-51 172.5 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V UvrC_HhH_N PF08459.6 gi|282164128|ref|YP_003356513.1| - 0.00026 20.5 0.0 0.00059 19.4 0.0 1.6 1 1 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal DUF99 PF01949.11 gi|282164128|ref|YP_003356513.1| - 0.017 14.2 0.2 0.044 12.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF99 CARDB PF07705.6 gi|282164129|ref|YP_003356514.1| - 0.0093 15.9 0.1 0.028 14.4 0.1 1.8 1 0 0 1 1 1 1 CARDB DUF3244 PF11589.3 gi|282164129|ref|YP_003356514.1| - 0.032 13.9 0.4 0.74 9.5 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF3244) Aconitase_C PF00694.14 gi|282164130|ref|YP_003356515.1| - 4.7e-19 68.8 0.0 8.1e-19 68.0 0.0 1.5 2 0 0 2 2 2 1 Aconitase C-terminal domain Aconitase PF00330.15 gi|282164131|ref|YP_003356516.1| - 2.6e-78 263.6 2.3 5.7e-52 176.7 0.1 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|282164131|ref|YP_003356516.1| - 0.00095 17.8 0.0 0.0013 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) PhoH PF02562.11 gi|282164131|ref|YP_003356516.1| - 0.086 12.0 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DisA_N PF02457.11 gi|282164132|ref|YP_003356517.1| - 1.5e-31 108.1 0.0 2.7e-31 107.2 0.0 1.5 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding CHASE4 PF05228.8 gi|282164132|ref|YP_003356517.1| - 0.052 13.1 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 CHASE4 domain S-AdoMet_synt_C PF02773.11 gi|282164133|ref|YP_003356518.1| - 2.1e-70 234.8 0.1 3.9e-70 233.9 0.1 1.5 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.11 gi|282164133|ref|YP_003356518.1| - 5.3e-55 184.5 0.2 1.5e-54 183.0 0.0 1.8 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.15 gi|282164133|ref|YP_003356518.1| - 3e-43 146.1 0.6 8e-43 144.7 0.1 2.0 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, N-terminal domain PDDEXK_3 PF13366.1 gi|282164134|ref|YP_003356519.1| - 2.4e-41 140.4 0.3 2.7e-41 140.3 0.2 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Tox-REase-7 PF15649.1 gi|282164134|ref|YP_003356519.1| - 7.1e-05 22.8 0.4 0.00015 21.8 0.0 1.7 2 0 0 2 2 2 1 Restriction endonuclease fold toxin 7 RIO1 PF01163.17 gi|282164135|ref|YP_003356520.1| - 1.6e-45 154.7 0.1 2.4e-45 154.2 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|282164135|ref|YP_003356520.1| - 4.7e-25 87.4 0.1 9.1e-25 86.5 0.1 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|282164135|ref|YP_003356520.1| - 3.8e-08 33.3 0.4 0.0004 20.1 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|282164135|ref|YP_003356520.1| - 0.0011 18.1 0.0 0.0018 17.4 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Rrf2 PF02082.15 gi|282164135|ref|YP_003356520.1| - 0.0098 15.9 0.0 0.029 14.5 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator DUF3135 PF11333.3 gi|282164135|ref|YP_003356520.1| - 0.019 15.1 0.0 0.038 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3135) WaaY PF06176.6 gi|282164135|ref|YP_003356520.1| - 0.038 13.1 0.1 0.062 12.4 0.1 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) PAC2 PF09754.4 gi|282164137|ref|YP_003356522.1| - 6.4e-43 147.1 0.0 7.9e-43 146.8 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF473 PF04322.7 gi|282164138|ref|YP_003356523.1| - 7e-34 116.0 0.0 8.1e-34 115.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) ATG2_CAD PF13329.1 gi|282164138|ref|YP_003356523.1| - 0.14 11.6 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Autophagy-related protein 2 CAD motif AIG2 PF06094.7 gi|282164139|ref|YP_003356524.1| - 3.7e-10 40.2 0.0 4.3e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 AIG2-like family AIG2_2 PF13772.1 gi|282164139|ref|YP_003356524.1| - 0.0017 18.4 0.0 0.0025 17.8 0.0 1.2 1 0 0 1 1 1 1 AIG2-like family Bac_luciferase PF00296.15 gi|282164140|ref|YP_003356525.1| - 3.8e-62 210.1 0.0 4.2e-62 210.0 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF2196 PF09962.4 gi|282164142|ref|YP_003356527.1| - 1.6e-33 114.2 1.9 1.7e-33 114.1 1.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) tRNA_SAD PF07973.9 gi|282164144|ref|YP_003356529.1| - 1e-10 41.3 1.6 2.2e-10 40.2 1.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|282164144|ref|YP_003356529.1| - 3.3e-06 25.6 0.0 5.1e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|282164144|ref|YP_003356529.1| - 0.0049 16.5 0.4 0.014 15.0 0.0 1.9 2 0 0 2 2 2 1 DHHA1 domain Lysine_decarbox PF03641.9 gi|282164145|ref|YP_003356530.1| - 2.5e-43 147.0 0.0 3.2e-43 146.7 0.0 1.1 1 0 0 1 1 1 1 Possible lysine decarboxylase TPR_11 PF13414.1 gi|282164146|ref|YP_003356531.1| - 1.4e-68 226.4 32.5 1.2e-12 47.2 0.1 6.4 3 1 5 8 8 8 8 TPR repeat TPR_16 PF13432.1 gi|282164146|ref|YP_003356531.1| - 3.3e-61 202.8 23.1 1.8e-11 44.3 0.0 6.6 2 2 6 8 8 8 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282164146|ref|YP_003356531.1| - 1.3e-52 171.6 11.8 7.2e-07 28.9 0.1 10.1 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282164146|ref|YP_003356531.1| - 3e-51 167.2 10.5 2.3e-10 39.5 0.1 10.1 10 0 0 10 10 10 8 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164146|ref|YP_003356531.1| - 3.1e-47 154.7 9.9 1.4e-06 28.3 0.1 9.7 1 1 9 10 10 10 10 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164146|ref|YP_003356531.1| - 1.1e-46 154.5 15.2 1.2e-11 43.7 0.2 9.5 10 0 0 10 10 9 8 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282164146|ref|YP_003356531.1| - 8e-41 138.2 17.8 6.4e-10 39.2 0.1 7.1 3 3 4 7 7 7 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282164146|ref|YP_003356531.1| - 6.4e-37 122.5 12.8 1.9e-07 30.3 0.1 8.5 7 1 1 8 8 8 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282164146|ref|YP_003356531.1| - 1.1e-36 124.6 14.5 1.6e-13 50.3 0.1 6.3 2 2 4 6 6 6 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282164146|ref|YP_003356531.1| - 2.6e-28 95.5 5.4 7.1e-05 22.3 0.0 9.1 10 0 0 10 10 9 6 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282164146|ref|YP_003356531.1| - 8.5e-24 82.3 13.4 9.2e-05 22.6 0.1 9.3 10 0 0 10 10 9 5 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282164146|ref|YP_003356531.1| - 1.7e-23 82.5 15.8 0.00016 21.7 0.0 6.1 4 1 2 6 6 6 6 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282164146|ref|YP_003356531.1| - 2e-19 68.8 20.1 2.7e-06 27.0 0.0 7.9 8 0 0 8 8 8 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|282164146|ref|YP_003356531.1| - 2.1e-19 69.4 3.1 0.0025 17.9 0.0 5.1 2 1 3 5 5 5 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|282164146|ref|YP_003356531.1| - 4.6e-17 61.6 4.9 8.3e-06 25.5 0.2 6.0 1 1 7 8 8 8 5 Tetratricopeptide repeat TPR_4 PF07721.9 gi|282164146|ref|YP_003356531.1| - 2.6e-11 42.7 4.4 0.24 11.9 0.3 6.8 7 0 0 7 7 6 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|282164146|ref|YP_003356531.1| - 5.7e-11 41.9 4.6 1.2e-06 27.7 1.1 3.5 1 1 1 3 3 3 2 Tetratricopeptide repeat TPR_21 PF09976.4 gi|282164146|ref|YP_003356531.1| - 1.1e-09 38.4 11.4 0.025 14.5 0.1 5.4 2 2 3 5 5 5 3 Tetratricopeptide repeat BTAD PF03704.12 gi|282164146|ref|YP_003356531.1| - 2.7e-09 37.4 3.5 0.012 15.8 0.2 4.8 2 2 3 5 5 5 2 Bacterial transcriptional activator domain TOM20_plant PF06552.7 gi|282164146|ref|YP_003356531.1| - 6.5e-09 35.6 7.8 1.5 8.4 0.0 7.2 2 2 3 7 7 7 2 Plant specific mitochondrial import receptor subunit TOM20 PPR PF01535.15 gi|282164146|ref|YP_003356531.1| - 7.2e-08 31.9 8.7 0.024 14.5 0.1 6.3 7 0 0 7 7 6 2 PPR repeat Coatomer_E PF04733.9 gi|282164146|ref|YP_003356531.1| - 7.6e-08 31.8 6.1 2.8e-05 23.4 0.6 3.3 1 1 2 3 3 3 1 Coatomer epsilon subunit TPR_3 PF07720.7 gi|282164146|ref|YP_003356531.1| - 3.9e-07 29.7 4.8 0.001 18.8 0.1 6.2 7 0 0 7 7 7 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|282164146|ref|YP_003356531.1| - 1.2e-06 27.5 7.6 0.31 9.7 0.2 4.5 2 2 3 5 5 5 4 NMDA receptor-regulated protein 1 PPR_2 PF13041.1 gi|282164146|ref|YP_003356531.1| - 0.00011 22.1 6.6 0.27 11.2 0.0 5.5 7 0 0 7 7 5 1 PPR repeat family SHNi-TPR PF10516.4 gi|282164146|ref|YP_003356531.1| - 0.00019 20.5 1.4 2.1 7.6 0.0 5.1 6 0 0 6 6 6 1 SHNi-TPR RPN7 PF10602.4 gi|282164146|ref|YP_003356531.1| - 0.00055 19.3 9.7 0.13 11.6 0.2 5.2 3 2 3 6 6 6 2 26S proteasome subunit RPN7 HrpB1_HrpK PF09613.5 gi|282164146|ref|YP_003356531.1| - 0.00063 19.2 0.2 12 5.3 0.0 3.8 2 2 2 4 4 4 0 Bacterial type III secretion protein (HrpB1_HrpK) ChAPs PF09295.5 gi|282164146|ref|YP_003356531.1| - 0.00083 18.2 0.1 0.13 11.0 0.0 3.1 2 2 1 3 3 3 1 ChAPs (Chs5p-Arf1p-binding proteins) Fis1_TPR_C PF14853.1 gi|282164146|ref|YP_003356531.1| - 0.00088 19.1 14.2 0.15 11.9 0.2 5.9 4 1 3 7 7 6 2 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.13 gi|282164146|ref|YP_003356531.1| - 0.0013 18.6 7.4 7.1 6.5 0.1 6.5 7 1 0 7 7 7 0 MIT (microtubule interacting and transport) domain DUF627 PF04781.7 gi|282164146|ref|YP_003356531.1| - 0.0016 18.0 0.1 1.5 8.4 0.0 3.1 4 0 0 4 4 3 1 Protein of unknown function (DUF627) YfiO PF13525.1 gi|282164146|ref|YP_003356531.1| - 0.0034 16.8 4.5 0.049 13.1 0.1 3.6 1 1 2 4 4 4 1 Outer membrane lipoprotein PPR_3 PF13812.1 gi|282164146|ref|YP_003356531.1| - 0.0045 17.1 0.5 0.12 12.7 0.0 3.4 4 0 0 4 4 2 1 Pentatricopeptide repeat domain CesA PF11439.3 gi|282164146|ref|YP_003356531.1| - 0.0046 16.8 2.2 4.2 7.3 0.1 3.4 2 1 1 3 3 3 0 Type III secretion system filament chaperone CesA TPR_5 PF12688.2 gi|282164146|ref|YP_003356531.1| - 0.0049 16.9 3.2 0.17 11.9 0.1 4.0 4 1 1 5 5 5 1 Tetratrico peptide repeat PPR_1 PF12854.2 gi|282164146|ref|YP_003356531.1| - 0.0076 15.7 10.2 6.3 6.3 0.0 5.7 6 0 0 6 6 5 0 PPR repeat TPPII_N PF12583.3 gi|282164146|ref|YP_003356531.1| - 0.0077 16.3 3.8 1 9.4 0.1 3.9 3 2 0 4 4 4 1 Tripeptidyl peptidase II N terminal Mad3_BUB1_I PF08311.7 gi|282164146|ref|YP_003356531.1| - 0.012 15.3 1.8 0.22 11.3 0.0 2.7 2 1 0 2 2 2 0 Mad3/BUB1 homology region 1 APP_E2 PF12925.2 gi|282164146|ref|YP_003356531.1| - 0.015 14.8 0.2 0.051 13.1 0.0 1.9 2 1 0 2 2 2 0 E2 domain of amyloid precursor protein Apc5 PF12862.2 gi|282164146|ref|YP_003356531.1| - 0.019 14.7 6.6 55 3.6 0.1 4.8 2 2 3 5 5 5 0 Anaphase-promoting complex subunit 5 Prenyltransf PF01255.14 gi|282164146|ref|YP_003356531.1| - 0.11 11.5 0.1 1.3 8.1 0.0 2.5 1 1 1 3 3 3 0 Putative undecaprenyl diphosphate synthase Prefoldin PF02996.12 gi|282164146|ref|YP_003356531.1| - 0.32 10.6 5.2 0.4 10.3 0.3 3.4 3 2 0 3 3 3 0 Prefoldin subunit Alkyl_sulf_dimr PF14863.1 gi|282164146|ref|YP_003356531.1| - 0.77 9.9 4.4 14 5.8 0.0 4.0 2 2 1 5 5 5 0 Alkyl sulfatase dimerisation Cupin_2 PF07883.6 gi|282164148|ref|YP_003356533.1| - 1.2e-10 40.7 0.0 2e-10 40.0 0.0 1.4 1 1 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|282164148|ref|YP_003356533.1| - 3.1e-05 23.6 0.0 3.8e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.2 gi|282164148|ref|YP_003356533.1| - 0.00038 20.1 0.0 0.00049 19.7 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|282164148|ref|YP_003356533.1| - 0.00048 19.4 0.0 0.00075 18.8 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.17 gi|282164148|ref|YP_003356533.1| - 0.003 17.0 0.0 0.0038 16.6 0.0 1.4 1 1 0 1 1 1 1 Cupin AraC_binding_2 PF14525.1 gi|282164148|ref|YP_003356533.1| - 0.0081 15.7 0.0 0.0094 15.5 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Asp_Arg_Hydrox PF05118.10 gi|282164148|ref|YP_003356533.1| - 0.0099 15.7 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase Cpn10 PF00166.16 gi|282164148|ref|YP_003356533.1| - 0.02 14.7 0.1 0.077 12.9 0.0 1.7 1 1 1 2 2 2 0 Chaperonin 10 Kd subunit MannoseP_isomer PF01050.13 gi|282164148|ref|YP_003356533.1| - 0.022 14.3 0.0 0.024 14.2 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase EutQ PF06249.7 gi|282164148|ref|YP_003356533.1| - 0.075 12.5 0.1 0.083 12.4 0.1 1.2 1 1 0 1 1 1 0 Ethanolamine utilisation protein EutQ Cupin_8 PF13621.1 gi|282164148|ref|YP_003356533.1| - 0.077 12.4 0.0 0.37 10.2 0.0 1.8 1 1 1 2 2 2 0 Cupin-like domain HgmA PF04209.8 gi|282164148|ref|YP_003356533.1| - 0.1 10.9 0.0 0.11 10.8 0.0 1.0 1 0 0 1 1 1 0 homogentisate 1,2-dioxygenase Pirin_C PF05726.8 gi|282164148|ref|YP_003356533.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Pirin C-terminal cupin domain MFS_1 PF07690.11 gi|282164149|ref|YP_003356534.1| - 1.6e-55 188.2 52.5 1.6e-55 188.2 36.4 2.5 2 1 0 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|282164149|ref|YP_003356534.1| - 1.1e-07 30.6 59.2 0.00023 19.7 24.8 3.2 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|282164149|ref|YP_003356534.1| - 6.6e-06 24.9 19.1 6.6e-06 24.9 13.2 3.4 2 1 1 3 3 3 1 Sugar (and other) transporter MFS_1_like PF12832.2 gi|282164149|ref|YP_003356534.1| - 0.00021 20.9 0.6 0.00021 20.9 0.4 5.4 5 1 1 6 6 6 2 MFS_1 like family DUF2964 PF11177.3 gi|282164149|ref|YP_003356534.1| - 0.038 13.9 0.3 0.038 13.9 0.2 5.5 5 1 1 6 6 6 0 Protein of unknown function (DUF2964) FAD_binding_3 PF01494.14 gi|282164150|ref|YP_003356535.1| - 2.3e-15 56.5 6.5 2.7e-10 39.8 1.8 3.1 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|282164150|ref|YP_003356535.1| - 8.9e-14 51.1 1.2 3.8e-10 39.1 0.1 2.6 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|282164150|ref|YP_003356535.1| - 7.6e-13 48.0 0.9 8e-06 24.9 0.4 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|282164150|ref|YP_003356535.1| - 2.7e-11 43.2 4.7 8.5e-11 41.5 3.3 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|282164150|ref|YP_003356535.1| - 1.1e-08 35.1 1.1 4.7e-08 33.1 0.7 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|282164150|ref|YP_003356535.1| - 1.9e-08 33.6 1.1 5.3e-07 28.8 0.3 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|282164150|ref|YP_003356535.1| - 4.4e-08 33.0 0.1 1.2e-07 31.6 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|282164150|ref|YP_003356535.1| - 5.4e-08 31.7 0.3 9.4e-08 30.9 0.2 1.4 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.12 gi|282164150|ref|YP_003356535.1| - 5e-06 25.7 0.1 1.5e-05 24.2 0.1 1.7 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.9 gi|282164150|ref|YP_003356535.1| - 1.3e-05 24.0 3.0 0.0084 14.7 0.5 2.2 1 1 1 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|282164150|ref|YP_003356535.1| - 7e-05 21.9 0.1 0.0001 21.3 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|282164150|ref|YP_003356535.1| - 0.00087 18.9 2.1 0.01 15.4 0.1 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|282164150|ref|YP_003356535.1| - 0.0026 18.1 1.6 0.019 15.3 0.4 2.7 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|282164150|ref|YP_003356535.1| - 0.0068 16.4 0.1 0.0096 16.0 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|282164150|ref|YP_003356535.1| - 0.046 12.0 0.0 0.07 11.4 0.0 1.2 1 0 0 1 1 1 0 GDP dissociation inhibitor CrtC PF07143.6 gi|282164151|ref|YP_003356536.1| - 0.011 15.0 0.0 0.015 14.6 0.0 1.4 1 0 0 1 1 1 0 Hydroxyneurosporene synthase (CrtC) PPDK_N PF01326.14 gi|282164152|ref|YP_003356537.1| - 3.2e-98 328.8 0.0 5.2e-98 328.1 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|282164152|ref|YP_003356537.1| - 1.6e-22 78.8 0.2 3.1e-22 77.9 0.1 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Rhodanese PF00581.15 gi|282164153|ref|YP_003356538.1| - 1.7e-21 76.6 0.0 2.2e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain DNA_ligase_ZBD PF03119.11 gi|282164153|ref|YP_003356538.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain EcoEI_R_C PF08463.5 gi|282164154|ref|YP_003356539.1| - 0.13 12.1 2.9 2.3 8.0 2.0 2.2 1 1 0 1 1 1 0 EcoEI R protein C-terminal DUF161 PF02588.10 gi|282164154|ref|YP_003356539.1| - 1 9.7 5.0 1.8 8.8 3.4 1.4 1 0 0 1 1 1 0 Uncharacterized BCR, YitT family COG1284 Pentapeptide_4 PF13599.1 gi|282164155|ref|YP_003356540.1| - 4.5e-19 68.0 16.1 3.4e-11 42.7 1.8 3.5 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|282164155|ref|YP_003356540.1| - 4.7e-16 57.6 1.2 0.0016 17.6 0.1 5.6 1 1 4 6 6 6 5 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.1 gi|282164155|ref|YP_003356540.1| - 2.6e-14 52.8 2.7 0.00042 20.1 0.0 4.7 2 1 3 5 5 5 4 Pentapeptide repeats (9 copies) LRR_5 PF13306.1 gi|282164155|ref|YP_003356540.1| - 0.091 12.4 7.7 0.08 12.6 2.8 2.2 1 1 1 2 2 2 0 Leucine rich repeats (6 copies) Phage_integrase PF00589.17 gi|282164156|ref|YP_003356541.1| - 2.7e-40 137.8 0.1 4.3e-40 137.2 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|282164156|ref|YP_003356541.1| - 9.4e-13 48.2 0.5 9.4e-13 48.2 0.3 2.4 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.2 gi|282164156|ref|YP_003356541.1| - 1.1e-07 31.8 0.0 1.9e-07 31.0 0.0 1.4 1 1 0 1 1 1 1 Integrase Phage_int_SAM_1 PF02899.12 gi|282164156|ref|YP_003356541.1| - 1.1e-07 31.8 0.0 4.2e-07 30.0 0.0 2.0 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.1 gi|282164156|ref|YP_003356541.1| - 0.0011 19.2 0.2 0.003 17.7 0.1 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.3 gi|282164156|ref|YP_003356541.1| - 0.013 14.2 0.4 0.17 10.5 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3435) Borrelia_lipo_2 PF06238.6 gi|282164156|ref|YP_003356541.1| - 0.075 13.0 0.6 2.1 8.4 0.0 2.4 2 0 0 2 2 2 0 Borrelia burgdorferi BBR25 lipoprotein CxxCxxCC PF03692.10 gi|282164157|ref|YP_003356542.1| - 2.6e-11 43.8 3.1 5.8e-11 42.7 2.2 1.7 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Transposase_mut PF00872.13 gi|282164158|ref|YP_003356543.1| - 1.7e-108 362.6 0.1 2e-108 362.3 0.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|282164158|ref|YP_003356543.1| - 3.1e-11 43.2 0.0 7.6e-11 42.0 0.0 1.7 1 0 0 1 1 1 1 MULE transposase domain Radical_SAM_N PF08497.5 gi|282164159|ref|YP_003356544.1| - 1.8e-129 431.0 0.4 3.5e-129 430.0 0.0 1.6 2 0 0 2 2 2 1 Radical SAM N-terminal DUF3362 PF11842.3 gi|282164159|ref|YP_003356544.1| - 2.4e-20 72.9 0.1 4.3e-20 72.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.16 gi|282164159|ref|YP_003356544.1| - 7.3e-17 62.0 0.1 6.2e-16 59.0 0.2 2.1 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|282164159|ref|YP_003356544.1| - 0.015 15.2 0.0 0.45 10.3 0.0 2.9 2 0 0 2 2 2 0 B12 binding domain MS_channel PF00924.13 gi|282164160|ref|YP_003356545.1| - 3.3e-19 69.0 5.0 3.3e-19 69.0 3.5 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel RHSP PF07999.6 gi|282164160|ref|YP_003356545.1| - 0.064 11.8 1.6 0.11 11.0 1.1 1.3 1 0 0 1 1 1 0 Retrotransposon hot spot protein Yip1 PF04893.12 gi|282164160|ref|YP_003356545.1| - 0.069 12.6 10.1 0.12 11.8 7.0 1.4 1 1 0 1 1 1 0 Yip1 domain AA_permease_2 PF13520.1 gi|282164161|ref|YP_003356546.1| - 2.3e-45 154.8 62.6 2.9e-45 154.5 43.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|282164161|ref|YP_003356546.1| - 5.9e-32 110.6 52.3 9.2e-32 109.9 36.3 1.2 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|282164161|ref|YP_003356546.1| - 0.00024 21.3 0.0 0.00039 20.6 0.0 1.3 1 0 0 1 1 1 1 Universal stress protein family OMPdecase PF00215.19 gi|282164163|ref|YP_003356548.1| - 6.9e-44 149.9 0.2 9.1e-44 149.5 0.1 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|282164163|ref|YP_003356548.1| - 8.7e-05 21.8 0.2 0.0016 17.7 0.0 2.2 1 1 0 2 2 2 1 PcrB family NanE PF04131.9 gi|282164163|ref|YP_003356548.1| - 0.021 13.7 0.4 4.9 6.0 0.0 2.6 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|282164163|ref|YP_003356548.1| - 0.033 13.0 1.4 0.039 12.8 1.0 1.3 1 1 0 1 1 1 0 FMN-dependent dehydrogenase ThiG PF05690.9 gi|282164163|ref|YP_003356548.1| - 0.053 12.5 0.1 0.37 9.8 0.0 2.0 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG MobB PF03205.9 gi|282164164|ref|YP_003356549.1| - 0.0033 17.1 0.0 0.0061 16.2 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Clp1 PF06807.9 gi|282164164|ref|YP_003356549.1| - 0.01 15.6 0.0 0.16 11.6 0.0 2.2 1 1 0 1 1 1 0 Pre-mRNA cleavage complex II protein Clp1 AAA_21 PF13304.1 gi|282164164|ref|YP_003356549.1| - 0.01 15.8 0.2 0.054 13.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|282164164|ref|YP_003356549.1| - 0.022 15.0 0.0 0.05 13.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.18 gi|282164164|ref|YP_003356549.1| - 0.024 14.5 0.0 0.063 13.2 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|282164164|ref|YP_003356549.1| - 0.033 14.3 0.0 0.062 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|282164164|ref|YP_003356549.1| - 0.051 12.6 0.1 0.08 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|282164164|ref|YP_003356549.1| - 0.088 12.3 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|282164164|ref|YP_003356549.1| - 0.11 11.6 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Peptidase_S49 PF01343.13 gi|282164165|ref|YP_003356550.1| - 1.5e-47 161.1 1.4 2.1e-47 160.7 1.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|282164165|ref|YP_003356550.1| - 3.5e-06 26.7 0.7 0.00088 18.9 0.1 2.4 2 0 0 2 2 2 2 Clp protease SDH_sah PF01972.11 gi|282164165|ref|YP_003356550.1| - 0.00095 18.0 0.1 0.0021 16.9 0.0 1.4 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Succ_CoA_lig PF13607.1 gi|282164165|ref|YP_003356550.1| - 0.023 14.2 0.2 0.046 13.3 0.1 1.5 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain stn_TNFRSF12A PF12191.3 gi|282164165|ref|YP_003356550.1| - 0.16 12.0 0.2 0.64 10.0 0.0 1.9 2 0 0 2 2 2 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain Peptidase_M10 PF00413.19 gi|282164166|ref|YP_003356551.1| - 2.2e-06 27.4 0.5 1.7e-05 24.5 0.4 2.1 1 1 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.1 gi|282164166|ref|YP_003356551.1| - 0.04 13.8 0.6 0.13 12.1 0.4 1.7 1 1 0 1 1 1 0 Metallo-peptidase family M12 NYD-SP28 PF14772.1 gi|282164167|ref|YP_003356552.1| - 0.013 15.6 0.1 0.013 15.5 0.0 1.1 1 0 0 1 1 1 0 Sperm tail RHH_1 PF01402.16 gi|282164169|ref|YP_003356554.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.6 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family KGG PF10685.4 gi|282164170|ref|YP_003356555.1| - 8.3e-08 31.9 5.6 8e-06 25.6 0.0 2.6 3 0 0 3 3 3 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282164170|ref|YP_003356555.1| - 5.2e-05 23.4 3.0 5.2e-05 23.4 2.1 1.1 1 0 0 1 1 1 1 Small hydrophilic plant seed protein SASP PF00269.15 gi|282164170|ref|YP_003356555.1| - 0.001 18.9 1.4 0.29 10.9 0.2 2.1 2 0 0 2 2 2 2 Small, acid-soluble spore proteins, alpha/beta type MC1 PF05854.6 gi|282164171|ref|YP_003356556.1| - 3.3e-22 78.2 0.2 5.9e-22 77.4 0.1 1.4 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Peptidase_MA_2 PF13485.1 gi|282164173|ref|YP_003356558.1| - 9.9e-11 41.7 0.0 1.6e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase MA superfamily DUF1570 PF07607.6 gi|282164173|ref|YP_003356558.1| - 0.0076 16.2 0.3 0.93 9.5 0.0 2.5 2 1 1 3 3 3 2 Protein of unknown function (DUF1570) Peptidase_M48 PF01435.13 gi|282164173|ref|YP_003356558.1| - 0.061 12.8 0.0 0.099 12.1 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M48 MTS PF05175.9 gi|282164174|ref|YP_003356559.1| - 3.9e-16 58.8 0.0 5.4e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|282164174|ref|YP_003356559.1| - 6.6e-14 51.9 0.0 9.3e-14 51.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|282164174|ref|YP_003356559.1| - 1.8e-12 46.9 0.1 2.4e-12 46.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|282164174|ref|YP_003356559.1| - 1.8e-11 44.6 0.2 2.6e-11 44.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|282164174|ref|YP_003356559.1| - 4.9e-11 42.5 0.0 6.5e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|282164174|ref|YP_003356559.1| - 1.9e-09 37.2 0.1 2.7e-09 36.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282164174|ref|YP_003356559.1| - 1.9e-06 28.1 0.0 3.1e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|282164174|ref|YP_003356559.1| - 1.3e-05 24.8 0.1 1.8e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF43 PF01861.11 gi|282164174|ref|YP_003356559.1| - 0.00015 20.8 0.0 0.00018 20.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF43 Cons_hypoth95 PF03602.10 gi|282164174|ref|YP_003356559.1| - 0.00017 21.0 0.0 0.00026 20.4 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|282164174|ref|YP_003356559.1| - 0.00018 21.8 0.0 0.00039 20.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282164174|ref|YP_003356559.1| - 0.0012 19.3 0.0 0.0029 18.0 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282164174|ref|YP_003356559.1| - 0.0051 16.5 0.0 0.0063 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|282164174|ref|YP_003356559.1| - 0.017 14.1 0.1 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) NodS PF05401.6 gi|282164174|ref|YP_003356559.1| - 0.022 14.1 0.0 0.041 13.2 0.0 1.4 1 0 0 1 1 1 0 Nodulation protein S (NodS) PCMT PF01135.14 gi|282164174|ref|YP_003356559.1| - 0.046 13.2 0.0 0.068 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_Mtase PF02384.11 gi|282164174|ref|YP_003356559.1| - 0.047 12.7 0.0 0.15 11.1 0.0 1.8 1 1 0 1 1 1 0 N-6 DNA Methylase Methyltransf_32 PF13679.1 gi|282164174|ref|YP_003356559.1| - 0.068 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain UPF0079 PF02367.12 gi|282164174|ref|YP_003356559.1| - 0.14 11.8 0.1 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ECR1_N PF14382.1 gi|282164175|ref|YP_003356560.1| - 2.4e-14 52.3 0.1 4.1e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.4 gi|282164175|ref|YP_003356560.1| - 4.3e-05 23.3 0.4 0.00012 21.9 0.3 1.8 1 0 0 1 1 1 1 Exosome component EXOSC1/CSL4 S1 PF00575.18 gi|282164175|ref|YP_003356560.1| - 4.4e-05 23.4 1.1 0.0078 16.2 0.7 2.3 1 1 0 1 1 1 1 S1 RNA binding domain zinc-ribbons_6 PF07191.7 gi|282164175|ref|YP_003356560.1| - 0.012 15.3 1.6 0.018 14.8 1.1 1.2 1 0 0 1 1 1 0 zinc-ribbons Auto_anti-p27 PF06677.7 gi|282164175|ref|YP_003356560.1| - 0.021 14.5 2.8 0.033 13.9 2.0 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.14 gi|282164175|ref|YP_003356560.1| - 0.034 13.8 0.1 0.049 13.3 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF342 PF03961.8 gi|282164175|ref|YP_003356560.1| - 0.044 12.1 0.0 0.073 11.4 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Zn_Tnp_IS91 PF14319.1 gi|282164175|ref|YP_003356560.1| - 0.059 12.8 0.1 0.081 12.4 0.0 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-DNL PF05180.7 gi|282164175|ref|YP_003356560.1| - 0.07 12.8 1.6 2.6 7.8 0.1 2.3 1 1 1 2 2 2 0 DNL zinc finger NADH-G_4Fe-4S_3 PF10588.4 gi|282164175|ref|YP_003356560.1| - 0.18 11.0 1.3 0.85 8.9 0.3 2.2 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Zn_Tnp_IS1 PF03811.8 gi|282164175|ref|YP_003356560.1| - 0.34 10.4 4.8 5 6.7 0.1 2.3 1 1 1 2 2 2 0 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|282164175|ref|YP_003356560.1| - 0.4 10.5 4.1 0.55 10.0 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|282164175|ref|YP_003356560.1| - 0.44 9.7 2.0 8.5 5.6 0.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|282164175|ref|YP_003356560.1| - 3.4 7.6 7.3 85 3.2 5.1 2.2 1 1 1 2 2 2 0 Zinc ribbon domain RNA_pol_L_2 PF13656.1 gi|282164176|ref|YP_003356561.1| - 1.9e-24 84.8 0.1 2.3e-24 84.6 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|282164176|ref|YP_003356561.1| - 2.8e-11 42.3 0.0 3.6e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Trm56 PF01994.11 gi|282164177|ref|YP_003356562.1| - 8.4e-49 164.3 0.0 1e-48 164.0 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 PrpR_N PF06506.6 gi|282164177|ref|YP_003356562.1| - 0.043 13.2 0.1 4 6.7 0.0 2.1 2 0 0 2 2 2 0 Propionate catabolism activator ATP-grasp_3 PF02655.9 gi|282164178|ref|YP_003356563.1| - 5.8e-39 133.5 0.0 8.3e-39 133.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|282164178|ref|YP_003356563.1| - 2e-13 50.4 0.0 4.2e-13 49.4 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|282164178|ref|YP_003356563.1| - 2.7e-08 32.9 0.0 1.2e-07 30.7 0.0 2.0 2 1 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|282164178|ref|YP_003356563.1| - 0.0096 15.3 0.0 0.043 13.1 0.0 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|282164178|ref|YP_003356563.1| - 0.024 13.9 0.0 2.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain TFIIE_alpha PF02002.12 gi|282164179|ref|YP_003356564.1| - 2.5e-20 71.9 6.1 3.9e-20 71.3 4.2 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit Pep3_Vps18 PF05131.9 gi|282164179|ref|YP_003356564.1| - 0.0046 16.3 0.2 0.0079 15.6 0.1 1.3 1 0 0 1 1 1 1 Pep3/Vps18/deep orange family HD PF01966.17 gi|282164180|ref|YP_003356565.1| - 7.9e-20 71.0 3.0 1.9e-19 69.8 1.3 1.9 2 0 0 2 2 2 1 HD domain HDOD PF08668.7 gi|282164180|ref|YP_003356565.1| - 0.00019 20.7 0.0 0.17 11.1 0.0 2.3 1 1 1 2 2 2 2 HDOD domain ALS2CR8 PF15299.1 gi|282164181|ref|YP_003356566.1| - 0.0078 15.8 0.1 0.0081 15.7 0.1 1.1 1 0 0 1 1 1 1 Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 Nitroreductase PF00881.19 gi|282164182|ref|YP_003356567.1| - 3.6e-27 95.2 0.0 5.9e-27 94.5 0.0 1.3 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|282164182|ref|YP_003356567.1| - 0.12 11.5 0.1 0.45 9.6 0.0 2.0 2 1 0 2 2 2 0 Putative TM nitroreductase KdpD PF02702.12 gi|282164183|ref|YP_003356568.1| - 0.00012 21.2 1.0 0.00015 20.9 0.7 1.1 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain ACT PF01842.20 gi|282164183|ref|YP_003356568.1| - 0.0062 15.9 0.4 0.058 12.8 0.2 2.6 1 1 1 2 2 2 1 ACT domain HTH_Crp_2 PF13545.1 gi|282164183|ref|YP_003356568.1| - 0.016 15.0 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain ACT_4 PF13291.1 gi|282164183|ref|YP_003356568.1| - 0.1 12.9 2.7 0.37 11.1 0.7 2.6 2 1 0 2 2 2 0 ACT domain Nitroreductase PF00881.19 gi|282164184|ref|YP_003356569.1| - 1.2e-34 119.4 1.4 3.3e-16 59.5 0.1 2.1 2 0 0 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.1 gi|282164184|ref|YP_003356569.1| - 1.2e-05 24.6 0.0 0.051 12.7 0.0 2.4 2 0 0 2 2 2 2 Putative TM nitroreductase Clp_N PF02861.15 gi|282164184|ref|YP_003356569.1| - 0.072 13.0 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Clp amino terminal domain Radical_SAM PF04055.16 gi|282164185|ref|YP_003356570.1| - 6.2e-09 36.2 0.7 1.8e-08 34.7 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Rubredoxin PF00301.15 gi|282164185|ref|YP_003356570.1| - 0.031 14.1 1.8 1.2 9.0 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin DUF1620 PF07774.8 gi|282164185|ref|YP_003356570.1| - 0.15 11.3 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1620) TGT PF01702.13 gi|282164186|ref|YP_003356571.1| - 8.8e-23 80.8 0.0 1.4e-22 80.1 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|282164186|ref|YP_003356571.1| - 1.3e-11 44.0 0.1 2.7e-11 43.0 0.1 1.5 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.1 gi|282164186|ref|YP_003356571.1| - 5.9e-10 38.8 0.0 1.5e-09 37.5 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase LEA_5 PF00477.12 gi|282164187|ref|YP_003356572.1| - 0.00027 21.1 7.6 0.00035 20.8 5.3 1.3 1 0 0 1 1 1 1 Small hydrophilic plant seed protein KGG PF10685.4 gi|282164187|ref|YP_003356572.1| - 0.00085 19.2 4.1 0.43 10.5 0.1 2.5 2 0 0 2 2 2 2 Stress-induced bacterial acidophilic repeat motif SASP PF00269.15 gi|282164187|ref|YP_003356572.1| - 0.045 13.6 8.9 0.22 11.4 1.0 2.1 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type CarboxypepD_reg PF13620.1 gi|282164188|ref|YP_003356573.1| - 6.1e-13 48.6 0.3 0.007 16.3 0.0 3.7 3 1 0 3 3 3 3 Carboxypeptidase regulatory-like domain Dioxygenase_C PF00775.16 gi|282164188|ref|YP_003356573.1| - 6.3e-06 25.5 0.5 0.00011 21.4 0.1 2.2 2 0 0 2 2 2 1 Dioxygenase Cna_B PF05738.8 gi|282164188|ref|YP_003356573.1| - 0.0027 17.4 0.3 10 5.9 0.1 3.5 3 0 0 3 3 3 2 Cna protein B-type domain DUF4480 PF13715.1 gi|282164188|ref|YP_003356573.1| - 0.007 16.3 0.0 0.026 14.5 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4480) fn3_3 PF14686.1 gi|282164188|ref|YP_003356573.1| - 0.03 14.4 2.4 0.6 10.2 0.3 2.6 2 1 0 2 2 2 0 Polysaccharide lyase family 4, domain II RPEL PF02755.10 gi|282164189|ref|YP_003356574.1| - 0.045 13.0 0.1 0.1 11.9 0.1 1.6 1 0 0 1 1 1 0 RPEL repeat GRAM PF02893.15 gi|282164192|ref|YP_003356577.1| - 0.0087 15.5 0.4 0.062 12.8 0.2 2.0 2 0 0 2 2 2 1 GRAM domain PK PF00224.16 gi|282164194|ref|YP_003356579.1| - 7.5e-128 426.0 7.2 1.1e-127 425.4 5.0 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|282164194|ref|YP_003356579.1| - 8.5e-33 112.3 2.0 1.1e-32 111.9 0.1 2.2 3 0 0 3 3 3 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|282164194|ref|YP_003356579.1| - 1.1e-17 63.3 0.9 4.9e-17 61.2 0.2 2.5 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|282164194|ref|YP_003356579.1| - 7.8e-05 21.6 2.0 0.00019 20.3 1.4 1.7 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family DUF3006 PF11213.3 gi|282164194|ref|YP_003356579.1| - 0.044 13.5 0.5 0.13 11.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3006) DUF58 PF01882.13 gi|282164196|ref|YP_003356581.1| - 2.7e-19 69.1 0.0 6e-19 67.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.6 gi|282164197|ref|YP_003356582.1| - 1.1e-61 206.2 0.0 3.2e-61 204.7 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|282164197|ref|YP_003356582.1| - 9.2e-13 48.1 0.0 1.9e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|282164197|ref|YP_003356582.1| - 7.2e-09 34.8 0.0 6.4e-08 31.7 0.0 2.1 1 1 0 1 1 1 1 MCM2/3/5 family RuvB_N PF05496.7 gi|282164197|ref|YP_003356582.1| - 1.1e-05 24.6 0.0 0.00011 21.2 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|282164197|ref|YP_003356582.1| - 5e-05 22.5 0.8 0.013 14.6 0.2 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|282164197|ref|YP_003356582.1| - 0.00016 21.1 0.0 0.0014 18.1 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|282164197|ref|YP_003356582.1| - 0.0022 18.2 0.0 0.0083 16.3 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2207 PF09972.4 gi|282164199|ref|YP_003356584.1| - 0.0009 17.9 0.4 0.0015 17.2 0.0 1.5 2 0 0 2 2 2 1 Predicted membrane protein (DUF2207) Spore_YpjB PF09577.5 gi|282164199|ref|YP_003356584.1| - 0.0034 16.9 0.0 0.0064 16.0 0.0 1.4 1 0 0 1 1 1 1 Sporulation protein YpjB (SpoYpjB) DUF4381 PF14316.1 gi|282164199|ref|YP_003356584.1| - 0.0035 17.4 0.3 0.0035 17.4 0.2 1.6 2 0 0 2 2 1 1 Domain of unknown function (DUF4381) RAMP PF04901.8 gi|282164199|ref|YP_003356584.1| - 0.005 16.5 0.1 0.01 15.5 0.1 1.4 1 0 0 1 1 1 1 Receptor activity modifying family BatD PF13584.1 gi|282164199|ref|YP_003356584.1| - 0.016 13.7 0.0 0.025 13.1 0.0 1.2 1 0 0 1 1 1 0 Oxygen tolerance DUF1312 PF07009.6 gi|282164199|ref|YP_003356584.1| - 0.069 12.9 1.4 0.8 9.5 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1312) RXT2_N PF08595.6 gi|282164199|ref|YP_003356584.1| - 0.083 12.6 1.7 0.15 11.8 1.2 1.3 1 0 0 1 1 1 0 RXT2-like, N-terminal stn_TNFRSF12A PF12191.3 gi|282164199|ref|YP_003356584.1| - 0.1 12.6 0.0 0.41 10.7 0.0 1.9 2 0 0 2 2 2 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain CcmH PF03918.9 gi|282164199|ref|YP_003356584.1| - 0.1 11.5 0.1 0.22 10.4 0.1 1.5 1 0 0 1 1 1 0 Cytochrome C biogenesis protein DUF4131 PF13567.1 gi|282164199|ref|YP_003356584.1| - 0.11 11.8 0.4 0.66 9.3 0.1 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) CRAM_rpt PF07016.6 gi|282164199|ref|YP_003356584.1| - 0.15 11.4 1.0 0.28 10.5 0.7 1.4 1 0 0 1 1 1 0 Cysteine-rich acidic integral membrane protein precursor Rifin_STEVOR PF02009.11 gi|282164199|ref|YP_003356584.1| - 0.59 9.7 2.9 1 8.9 2.0 1.2 1 0 0 1 1 1 0 Rifin/stevor family Epimerase PF01370.16 gi|282164200|ref|YP_003356585.1| - 1.2e-42 146.0 0.0 1.5e-42 145.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|282164200|ref|YP_003356585.1| - 3.8e-15 55.3 0.0 5.1e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|282164200|ref|YP_003356585.1| - 1.4e-14 53.7 0.0 1.6e-13 50.2 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|282164200|ref|YP_003356585.1| - 2.7e-13 49.4 0.0 3e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|282164200|ref|YP_003356585.1| - 5.1e-11 41.9 0.3 1.1e-06 27.8 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|282164200|ref|YP_003356585.1| - 3.1e-10 40.3 0.0 7.7e-10 39.0 0.0 1.8 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|282164200|ref|YP_003356585.1| - 0.0075 16.2 0.2 0.07 13.0 0.0 2.3 2 0 0 2 2 2 1 short chain dehydrogenase Pyr_redox PF00070.22 gi|282164200|ref|YP_003356585.1| - 0.011 16.1 1.5 0.61 10.5 0.1 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|282164200|ref|YP_003356585.1| - 0.04 14.1 0.0 0.083 13.1 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|282164200|ref|YP_003356585.1| - 0.24 10.7 1.2 0.66 9.3 0.2 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RIO1 PF01163.17 gi|282164201|ref|YP_003356586.1| - 2.2e-67 226.0 0.1 3e-67 225.6 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|282164201|ref|YP_003356586.1| - 0.00018 20.7 0.0 0.00036 19.7 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|282164201|ref|YP_003356586.1| - 0.00021 21.0 0.0 0.0035 17.0 0.0 2.2 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase_Tyr PF07714.12 gi|282164201|ref|YP_003356586.1| - 0.063 12.3 0.0 0.089 11.8 0.0 1.4 1 1 0 1 1 1 0 Protein tyrosine kinase KH_1 PF00013.24 gi|282164202|ref|YP_003356587.1| - 1.2e-19 69.7 11.2 3.2e-11 42.7 1.7 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|282164202|ref|YP_003356587.1| - 5.8e-08 32.2 14.6 0.00095 18.7 2.0 2.6 2 0 0 2 2 2 2 KH domain HTH_41 PF14502.1 gi|282164202|ref|YP_003356587.1| - 0.095 12.3 1.0 1.5 8.4 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain KH_5 PF13184.1 gi|282164202|ref|YP_003356587.1| - 0.14 12.0 5.0 0.61 9.9 0.7 2.5 2 0 0 2 2 2 0 NusA-like KH domain KH_4 PF13083.1 gi|282164202|ref|YP_003356587.1| - 0.61 9.7 7.9 0.96 9.1 0.4 3.3 2 1 1 3 3 3 0 KH domain KH_2 PF07650.12 gi|282164202|ref|YP_003356587.1| - 1.9 8.1 15.1 0.068 12.7 1.4 2.9 3 1 0 3 3 3 0 KH domain PAC2 PF09754.4 gi|282164203|ref|YP_003356588.1| - 1.6e-50 172.0 0.0 1.8e-50 171.8 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.7 gi|282164204|ref|YP_003356589.1| - 3.9e-23 80.9 2.0 4.2e-23 80.8 1.4 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF1272 PF06906.6 gi|282164204|ref|YP_003356589.1| - 0.00079 19.2 1.8 0.00088 19.0 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) RecR PF02132.10 gi|282164204|ref|YP_003356589.1| - 0.0011 18.3 0.3 0.0017 17.7 0.2 1.3 1 0 0 1 1 1 1 RecR protein DZR PF12773.2 gi|282164204|ref|YP_003356589.1| - 0.0015 18.3 1.7 0.0017 18.1 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-tcix PF14952.1 gi|282164204|ref|YP_003356589.1| - 0.0015 17.8 6.4 0.023 13.9 0.4 2.2 2 0 0 2 2 2 2 Putative treble-clef, zinc-finger, Zn-binding PolC_DP2 PF03833.8 gi|282164204|ref|YP_003356589.1| - 0.0028 15.4 0.6 0.0028 15.4 0.4 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-NADH-PPase PF09297.6 gi|282164204|ref|YP_003356589.1| - 0.011 15.2 4.0 0.42 10.1 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|282164204|ref|YP_003356589.1| - 0.016 15.0 2.9 0.022 14.5 2.0 1.4 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-FPG_IleRS PF06827.9 gi|282164204|ref|YP_003356589.1| - 0.031 13.9 1.7 3.3 7.4 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.1 gi|282164204|ref|YP_003356589.1| - 0.031 13.7 4.5 1.5 8.4 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|282164204|ref|YP_003356589.1| - 0.058 13.3 0.9 1.4 8.9 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Elf1 PF05129.8 gi|282164204|ref|YP_003356589.1| - 0.095 12.4 0.1 0.25 11.0 0.1 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.1 gi|282164204|ref|YP_003356589.1| - 0.11 11.7 7.8 1.9 7.7 1.0 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|282164204|ref|YP_003356589.1| - 0.12 12.0 3.2 1.6 8.5 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal YhfH PF14149.1 gi|282164204|ref|YP_003356589.1| - 0.17 11.7 1.1 0.17 11.7 0.7 2.7 3 0 0 3 3 3 0 YhfH-like protein Prim_Zn_Ribbon PF08273.7 gi|282164204|ref|YP_003356589.1| - 0.22 11.6 0.7 0.22 11.6 0.5 2.0 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-TFIIB PF13453.1 gi|282164204|ref|YP_003356589.1| - 0.32 10.2 1.6 2.7 7.2 0.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger UPF0547 PF10571.4 gi|282164204|ref|YP_003356589.1| - 0.4 10.4 6.5 0.62 9.8 0.2 2.2 1 1 2 3 3 2 0 Uncharacterised protein family UPF0547 DUF1936 PF09151.5 gi|282164204|ref|YP_003356589.1| - 0.42 10.1 0.2 0.42 10.1 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) DUF2072 PF09845.4 gi|282164204|ref|YP_003356589.1| - 0.43 10.5 3.0 0.52 10.2 2.1 1.3 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) DUF35_N PF12172.3 gi|282164204|ref|YP_003356589.1| - 0.51 10.3 4.2 1.7 8.6 2.9 1.8 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TFIIS_C PF01096.13 gi|282164204|ref|YP_003356589.1| - 1.5 8.4 5.1 3.4 7.3 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|282164204|ref|YP_003356589.1| - 1.8 7.9 4.2 3 7.2 0.4 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|282164204|ref|YP_003356589.1| - 1.9 8.5 5.6 1.1 9.2 0.7 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|282164204|ref|YP_003356589.1| - 2.2 8.1 4.8 1.1 9.1 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|282164204|ref|YP_003356589.1| - 2.8 7.9 7.2 51 3.9 0.5 2.2 1 1 1 2 2 2 0 Zinc ribbon domain DUF329 PF03884.9 gi|282164204|ref|YP_003356589.1| - 5.7 6.5 5.6 4.3 6.9 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) EIF_2_alpha PF07541.7 gi|282164205|ref|YP_003356590.1| - 2.4e-27 94.8 0.0 4.3e-27 94.1 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|282164205|ref|YP_003356590.1| - 5.2e-13 48.8 0.2 5.2e-13 48.8 0.2 1.8 2 0 0 2 2 2 1 S1 RNA binding domain MBT PF02820.13 gi|282164205|ref|YP_003356590.1| - 0.098 12.5 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 mbt repeat Ribosomal_S27e PF01667.12 gi|282164206|ref|YP_003356591.1| - 3.6e-23 80.8 1.6 4e-23 80.7 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn_Tnp_IS91 PF14319.1 gi|282164206|ref|YP_003356591.1| - 0.0062 16.0 0.2 0.0062 16.0 0.1 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain HypA PF01155.14 gi|282164206|ref|YP_003356591.1| - 0.017 14.8 0.6 0.019 14.6 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_4 PF13717.1 gi|282164206|ref|YP_003356591.1| - 0.031 13.9 1.7 2 8.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain FYVE PF01363.16 gi|282164206|ref|YP_003356591.1| - 0.035 14.0 0.2 0.038 13.8 0.1 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-C2H2_3 PF13878.1 gi|282164206|ref|YP_003356591.1| - 0.047 13.2 1.2 1.9 8.1 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO C1_1 PF00130.17 gi|282164206|ref|YP_003356591.1| - 0.065 12.9 0.5 0.09 12.5 0.3 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF3797 PF12677.2 gi|282164206|ref|YP_003356591.1| - 0.087 12.4 4.2 0.27 10.9 0.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_6 PF14599.1 gi|282164206|ref|YP_003356591.1| - 0.097 12.4 3.2 0.41 10.4 2.4 1.8 1 1 0 1 1 1 0 Zinc-ribbon zf-CHY PF05495.7 gi|282164206|ref|YP_003356591.1| - 0.12 12.5 1.1 0.16 12.1 0.7 1.2 1 0 0 1 1 1 0 CHY zinc finger A2L_zn_ribbon PF08792.5 gi|282164206|ref|YP_003356591.1| - 0.18 11.3 2.1 7.2 6.2 0.2 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Sgf11 PF08209.6 gi|282164206|ref|YP_003356591.1| - 0.2 11.0 2.9 0.66 9.3 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|282164206|ref|YP_003356591.1| - 0.29 11.1 1.6 0.51 10.3 1.1 1.4 1 1 0 1 1 1 0 Zinc ribbon domain zf-AN1 PF01428.11 gi|282164206|ref|YP_003356591.1| - 0.36 10.7 2.1 1.9 8.3 0.3 2.0 2 0 0 2 2 2 0 AN1-like Zinc finger zinc_ribbon_5 PF13719.1 gi|282164206|ref|YP_003356591.1| - 0.89 9.1 5.8 2.8 7.6 0.5 2.3 1 1 1 2 2 1 0 zinc-ribbon domain Ribosomal_L44 PF00935.14 gi|282164206|ref|YP_003356591.1| - 0.89 9.6 3.5 7.4 6.6 0.4 2.1 1 1 1 2 2 2 0 Ribosomal protein L44 TFIIS_C PF01096.13 gi|282164206|ref|YP_003356591.1| - 1.1 8.9 4.3 6.6 6.4 0.4 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L44 PF00935.14 gi|282164207|ref|YP_003356592.1| - 8.1e-28 96.2 6.5 1.3e-27 95.6 4.5 1.3 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ISL3 PF14690.1 gi|282164207|ref|YP_003356592.1| - 0.0053 16.7 2.6 1.8 8.6 0.1 2.4 2 1 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|282164207|ref|YP_003356592.1| - 0.025 13.7 0.4 0.73 9.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_KTR PF14205.1 gi|282164207|ref|YP_003356592.1| - 0.042 13.3 1.4 0.52 9.8 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR zinc_ribbon_5 PF13719.1 gi|282164207|ref|YP_003356592.1| - 0.093 12.3 2.5 1.4 8.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|282164207|ref|YP_003356592.1| - 0.097 12.3 2.5 1.6 8.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|282164207|ref|YP_003356592.1| - 0.13 11.9 2.5 0.45 10.2 0.1 2.6 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.1 gi|282164207|ref|YP_003356592.1| - 0.23 10.9 3.4 0.57 9.7 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|282164207|ref|YP_003356592.1| - 0.34 10.7 3.7 1 9.1 2.6 1.8 1 1 0 1 1 1 0 Double zinc ribbon zf-BED PF02892.10 gi|282164207|ref|YP_003356592.1| - 0.38 10.5 4.0 7.5 6.4 0.5 2.3 2 0 0 2 2 2 0 BED zinc finger Ribosomal_L33 PF00471.15 gi|282164207|ref|YP_003356592.1| - 1.7 8.9 8.9 0.9 9.8 2.9 2.4 2 0 0 2 2 2 0 Ribosomal protein L33 WCCH PF03716.9 gi|282164207|ref|YP_003356592.1| - 2.7 7.5 8.5 0.38 10.2 1.8 2.1 2 0 0 2 2 2 0 WCCH motif Sld5 PF05916.6 gi|282164208|ref|YP_003356593.1| - 0.078 13.2 0.1 0.13 12.6 0.1 1.4 1 0 0 1 1 1 0 GINS complex protein DNA_primase_S PF01896.14 gi|282164209|ref|YP_003356594.1| - 2.5e-21 75.9 0.0 4.7e-21 75.1 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Chordopox_A13L PF05961.6 gi|282164211|ref|YP_003356596.1| - 0.0045 16.9 0.3 0.0045 16.9 0.2 1.9 2 1 0 2 2 2 1 Chordopoxvirus A13L protein DUF373 PF04123.8 gi|282164211|ref|YP_003356596.1| - 1.3 7.9 17.2 3.9 6.4 11.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF373) ApoL PF05461.6 gi|282164211|ref|YP_003356596.1| - 3.8 6.6 4.9 7.1 5.7 3.4 1.5 1 0 0 1 1 1 0 Apolipoprotein L DUF4013 PF13197.1 gi|282164211|ref|YP_003356596.1| - 5 6.4 36.9 1.2 8.4 13.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) tRNA-synt_1 PF00133.17 gi|282164212|ref|YP_003356597.1| - 4.7e-113 378.2 0.0 4.6e-112 375.0 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|282164212|ref|YP_003356597.1| - 2.5e-35 121.5 0.3 4.4e-35 120.6 0.2 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|282164212|ref|YP_003356597.1| - 7.6e-21 74.2 0.0 3.7e-11 42.3 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|282164212|ref|YP_003356597.1| - 8.9e-05 21.8 0.0 0.00019 20.8 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|282164212|ref|YP_003356597.1| - 0.006 15.7 0.0 0.23 10.5 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain PAS_3 PF08447.6 gi|282164213|ref|YP_003356598.1| - 6.5e-46 154.3 0.2 4.9e-22 77.8 0.1 3.4 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|282164213|ref|YP_003356598.1| - 1.3e-27 96.2 0.0 1.2e-11 44.9 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|282164213|ref|YP_003356598.1| - 4.8e-27 93.9 0.0 1.6e-11 44.0 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|282164213|ref|YP_003356598.1| - 7.1e-23 80.7 1.3 1.1e-08 35.0 0.0 4.0 3 2 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|282164213|ref|YP_003356598.1| - 8.1e-20 70.6 0.0 2e-19 69.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|282164213|ref|YP_003356598.1| - 1.4e-09 37.4 0.0 5.6e-06 26.0 0.0 3.2 3 0 0 3 3 2 2 PAS domain PAS_11 PF14598.1 gi|282164213|ref|YP_003356598.1| - 2.8e-07 30.4 0.0 1.2e-06 28.4 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|282164213|ref|YP_003356598.1| - 0.00011 22.1 0.4 0.84 9.6 0.0 3.6 4 0 0 4 4 4 2 PAS fold HATPase_c_2 PF13581.1 gi|282164213|ref|YP_003356598.1| - 0.0022 17.7 0.0 0.007 16.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282164213|ref|YP_003356598.1| - 0.1 12.2 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 GHKL domain DUF2560 PF10834.3 gi|282164213|ref|YP_003356598.1| - 3.9 7.5 10.0 7.2 6.6 0.1 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF2560) PAS_9 PF13426.1 gi|282164214|ref|YP_003356599.1| - 5.5e-39 132.7 0.1 4e-12 46.4 0.0 3.3 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|282164214|ref|YP_003356599.1| - 2.8e-29 101.1 0.0 2e-10 40.4 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|282164214|ref|YP_003356599.1| - 8.4e-20 70.8 0.0 3.2e-06 27.1 0.0 3.8 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|282164214|ref|YP_003356599.1| - 2.1e-18 66.0 0.1 7.9e-18 64.2 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|282164214|ref|YP_003356599.1| - 4.1e-18 64.5 0.0 1.5e-07 31.0 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|282164214|ref|YP_003356599.1| - 8.7e-17 61.0 0.0 4.3e-06 26.7 0.0 3.4 3 0 0 3 3 3 3 PAS fold HATPase_c_3 PF13589.1 gi|282164214|ref|YP_003356599.1| - 0.0093 15.6 0.1 0.026 14.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IncA PF04156.9 gi|282164214|ref|YP_003356599.1| - 0.02 14.4 0.3 0.02 14.4 0.2 1.7 2 0 0 2 2 2 0 IncA protein PAS_6 PF08348.6 gi|282164214|ref|YP_003356599.1| - 0.043 13.3 0.1 0.12 11.9 0.0 1.8 1 0 0 1 1 1 0 YheO-like PAS domain Response_reg PF00072.19 gi|282164215|ref|YP_003356600.1| - 1.9e-18 66.4 0.1 2.2e-18 66.3 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.6 gi|282164216|ref|YP_003356601.1| - 2.1e-37 127.0 6.9 3.3e-21 75.1 0.2 3.0 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|282164216|ref|YP_003356601.1| - 2.7e-27 95.1 0.0 4.9e-15 55.7 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|282164216|ref|YP_003356601.1| - 2.4e-19 69.0 0.2 7e-19 67.5 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|282164216|ref|YP_003356601.1| - 6.7e-19 67.9 0.4 2.7e-11 43.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.1 gi|282164216|ref|YP_003356601.1| - 2.2e-16 60.6 0.0 5.5e-16 59.3 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|282164216|ref|YP_003356601.1| - 1.5e-15 56.9 0.1 3.2e-06 26.9 0.0 3.3 2 1 0 2 2 2 2 PAS fold GAF PF01590.21 gi|282164216|ref|YP_003356601.1| - 1.9e-08 34.5 0.0 3.4e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|282164216|ref|YP_003356601.1| - 2.8e-06 27.4 0.0 8e-05 22.7 0.0 2.4 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|282164216|ref|YP_003356601.1| - 7.5e-06 25.6 0.0 0.025 14.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_11 PF14598.1 gi|282164216|ref|YP_003356601.1| - 5.9e-05 22.9 0.0 0.0057 16.5 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|282164216|ref|YP_003356601.1| - 0.00015 21.5 0.0 0.00076 19.2 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Seryl_tRNA_N PF02403.17 gi|282164216|ref|YP_003356601.1| - 0.0059 16.6 5.0 0.26 11.3 0.2 3.1 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain HATPase_c_3 PF13589.1 gi|282164216|ref|YP_003356601.1| - 0.096 12.3 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IncA PF04156.9 gi|282164216|ref|YP_003356601.1| - 0.14 11.7 0.1 0.14 11.7 0.1 3.0 3 0 0 3 3 3 0 IncA protein PAS_9 PF13426.1 gi|282164217|ref|YP_003356602.1| - 2.9e-46 156.1 0.5 4e-20 72.1 0.1 3.9 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|282164217|ref|YP_003356602.1| - 1.3e-35 121.5 0.0 8.8e-14 51.2 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|282164217|ref|YP_003356602.1| - 4.9e-35 119.8 0.0 5.2e-11 42.5 0.0 3.9 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|282164217|ref|YP_003356602.1| - 8.2e-22 77.0 0.0 1.7e-21 76.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|282164217|ref|YP_003356602.1| - 2e-19 68.6 0.0 1.2e-08 34.5 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|282164217|ref|YP_003356602.1| - 1.7e-13 50.4 0.7 3.1e-07 30.3 0.0 3.4 4 0 0 4 4 3 2 PAS fold PAS_7 PF12860.2 gi|282164217|ref|YP_003356602.1| - 9.7e-11 41.6 1.1 3.2e-06 27.1 0.2 4.1 3 1 0 3 3 3 2 PAS fold PAS_10 PF13596.1 gi|282164217|ref|YP_003356602.1| - 9e-10 38.7 1.1 3.9e-06 27.0 0.1 4.3 3 1 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.1 gi|282164217|ref|YP_003356602.1| - 7.6e-05 22.4 0.0 0.00017 21.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|282164217|ref|YP_003356602.1| - 0.00049 19.7 0.0 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|282164217|ref|YP_003356602.1| - 0.011 15.4 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TPR_11 PF13414.1 gi|282164220|ref|YP_003356605.1| - 1.8e-228 738.6 132.0 3.2e-17 61.9 3.0 18.5 2 2 16 22 22 22 22 TPR repeat TPR_1 PF00515.23 gi|282164220|ref|YP_003356605.1| - 6.9e-153 490.7 84.9 5.4e-09 35.2 0.6 28.0 28 0 0 28 28 28 27 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282164220|ref|YP_003356605.1| - 6.8e-151 478.2 63.1 7.3e-06 25.7 0.4 27.9 28 0 0 28 28 28 26 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282164220|ref|YP_003356605.1| - 5e-138 438.2 91.5 2.3e-08 33.3 0.7 27.8 28 0 0 28 28 28 26 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282164220|ref|YP_003356605.1| - 9.1e-112 363.9 99.8 2.5e-10 40.7 1.2 19.1 5 4 15 22 22 22 22 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282164220|ref|YP_003356605.1| - 7.3e-104 339.8 80.7 8.1e-12 44.9 2.6 16.2 2 2 16 18 18 18 17 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282164220|ref|YP_003356605.1| - 1.9e-102 327.5 63.8 7.2e-07 28.5 0.3 27.4 22 3 6 28 28 27 22 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164220|ref|YP_003356605.1| - 1.2e-91 292.7 83.4 1.1e-05 25.5 0.7 26.1 2 2 25 27 27 27 27 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282164220|ref|YP_003356605.1| - 3.4e-60 200.2 69.9 5e-07 29.9 0.1 18.1 7 3 12 20 20 20 17 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282164220|ref|YP_003356605.1| - 1.2e-58 191.5 38.9 0.0034 17.7 0.1 25.5 27 0 0 27 27 25 9 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282164220|ref|YP_003356605.1| - 5e-34 116.2 43.6 0.00072 19.6 0.2 17.2 1 1 15 18 18 18 10 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282164220|ref|YP_003356605.1| - 3.9e-30 101.2 55.8 0.013 15.2 0.1 25.0 24 2 3 27 27 27 5 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|282164220|ref|YP_003356605.1| - 5.7e-18 65.1 9.5 7.1 6.1 0.0 16.6 1 1 17 19 19 19 0 Plant specific mitochondrial import receptor subunit TOM20 Apc3 PF12895.2 gi|282164220|ref|YP_003356605.1| - 2.8e-14 53.0 20.2 0.22 11.6 0.4 10.1 5 3 6 12 12 12 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|282164220|ref|YP_003356605.1| - 7.1e-14 51.4 56.8 0.0047 16.7 1.3 12.8 8 4 3 15 15 14 5 Tetratricopeptide repeat TPR_4 PF07721.9 gi|282164220|ref|YP_003356605.1| - 1e-13 50.2 24.3 4.8 7.9 0.0 16.2 21 0 0 21 21 14 0 Tetratricopeptide repeat DicB PF05358.6 gi|282164220|ref|YP_003356605.1| - 4.2e-12 45.3 0.0 0.54 9.7 0.0 11.3 14 3 3 17 17 11 1 DicB protein EST1_DNA_bind PF10373.4 gi|282164220|ref|YP_003356605.1| - 2e-08 33.7 3.3 0.029 13.5 0.0 5.2 4 1 0 4 4 4 2 Est1 DNA/RNA binding domain SHNi-TPR PF10516.4 gi|282164220|ref|YP_003356605.1| - 5.2e-06 25.6 27.9 0.5 9.6 0.0 13.6 19 0 0 19 19 18 2 SHNi-TPR BTAD PF03704.12 gi|282164220|ref|YP_003356605.1| - 3.2e-05 24.2 40.3 0.46 10.7 0.2 10.1 2 1 7 10 10 10 3 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|282164220|ref|YP_003356605.1| - 0.00015 21.7 19.8 8.1 6.5 0.0 9.3 7 3 2 9 9 9 0 Tetratrico peptide repeat FAT PF02259.18 gi|282164220|ref|YP_003356605.1| - 0.0002 20.4 0.1 0.64 8.9 0.0 5.4 4 3 2 6 6 6 1 FAT domain DUF627 PF04781.7 gi|282164220|ref|YP_003356605.1| - 0.00043 19.8 0.0 28 4.3 0.0 6.3 4 3 2 6 6 6 0 Protein of unknown function (DUF627) PPR PF01535.15 gi|282164220|ref|YP_003356605.1| - 0.00091 19.0 7.3 27 5.0 0.0 9.2 11 0 0 11 11 8 0 PPR repeat TPR_10 PF13374.1 gi|282164220|ref|YP_003356605.1| - 0.0017 18.2 77.7 0.074 13.0 0.3 16.7 20 0 0 20 20 16 3 Tetratricopeptide repeat Apc5 PF12862.2 gi|282164220|ref|YP_003356605.1| - 0.0031 17.3 16.4 5.8 6.8 0.2 9.4 5 1 4 9 9 7 0 Anaphase-promoting complex subunit 5 DUF3366 PF11846.3 gi|282164220|ref|YP_003356605.1| - 0.0042 16.9 11.5 0.4 10.5 0.1 6.6 4 3 0 7 7 6 1 Domain of unknown function (DUF3366) DUF1233 PF06806.7 gi|282164220|ref|YP_003356605.1| - 0.0059 16.1 0.0 78 2.9 0.0 6.1 7 0 0 7 7 5 0 Putative excisionase (DUF1233) LysR_substrate PF03466.15 gi|282164220|ref|YP_003356605.1| - 0.0061 15.6 0.2 9.6 5.2 0.0 5.0 5 0 0 5 5 5 0 LysR substrate binding domain Coatomer_E PF04733.9 gi|282164220|ref|YP_003356605.1| - 0.012 14.8 0.1 9.3 5.3 0.0 4.7 5 1 0 5 5 5 0 Coatomer epsilon subunit Fis1_TPR_C PF14853.1 gi|282164220|ref|YP_003356605.1| - 0.036 13.9 16.8 2.5 8.0 0.5 8.2 6 1 1 7 7 6 0 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.13 gi|282164220|ref|YP_003356605.1| - 0.07 13.0 38.9 5.4 6.9 0.3 13.5 16 1 1 17 17 15 0 MIT (microtubule interacting and transport) domain Sec5 PF15469.1 gi|282164220|ref|YP_003356605.1| - 0.11 12.1 1.5 3.4 7.3 0.0 4.0 4 1 0 4 4 4 0 Exocyst complex component Sec5 BRO1 PF03097.13 gi|282164220|ref|YP_003356605.1| - 3.2 6.3 8.2 7.5 5.1 0.1 4.4 5 1 0 5 5 5 0 BRO1-like domain Lambda_Kil PF06301.6 gi|282164220|ref|YP_003356605.1| - 4.1 6.9 9.6 20 4.7 0.1 5.9 6 0 0 6 6 4 0 Bacteriophage lambda Kil protein Mago-bind PF09282.5 gi|282164220|ref|YP_003356605.1| - 5.8 6.5 10.2 48 3.6 0.1 5.5 5 0 0 5 5 5 0 Mago binding FAA_hydrolase PF01557.13 gi|282164221|ref|YP_003356606.1| - 6.4e-68 228.4 0.0 7.7e-68 228.1 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family NAD_binding_1 PF00175.16 gi|282164222|ref|YP_003356607.1| - 1.5e-13 51.2 0.1 2.8e-13 50.3 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|282164222|ref|YP_003356607.1| - 2.9e-12 45.8 4.5 5e-12 45.1 3.1 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|282164222|ref|YP_003356607.1| - 5.6e-07 29.5 0.0 2.7e-06 27.4 0.0 2.1 2 1 0 2 2 2 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|282164222|ref|YP_003356607.1| - 0.093 12.6 0.1 5.9 6.7 0.0 2.3 2 0 0 2 2 2 0 Ferric reductase NAD binding domain DHO_dh PF01180.16 gi|282164223|ref|YP_003356608.1| - 2.1e-63 214.0 0.8 2.4e-63 213.8 0.6 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|282164223|ref|YP_003356608.1| - 6e-08 31.8 0.1 0.0018 17.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|282164223|ref|YP_003356608.1| - 0.00013 21.2 5.7 0.00027 20.2 3.2 2.1 2 1 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|282164223|ref|YP_003356608.1| - 0.00017 20.9 1.0 0.00089 18.5 0.1 2.3 2 1 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.7 gi|282164223|ref|YP_003356608.1| - 0.0027 16.7 0.4 0.0067 15.4 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF561) IMPDH PF00478.20 gi|282164223|ref|YP_003356608.1| - 0.0031 16.4 1.1 0.0056 15.6 0.8 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain PcrB PF01884.12 gi|282164223|ref|YP_003356608.1| - 0.025 13.8 0.5 0.81 8.8 0.1 2.3 2 0 0 2 2 2 0 PcrB family N6_Mtase PF02384.11 gi|282164224|ref|YP_003356609.1| - 3.8e-19 68.8 0.0 5.7e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase Eco57I PF07669.6 gi|282164224|ref|YP_003356609.1| - 5.8e-18 65.2 0.0 1.4e-17 63.9 0.0 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_26 PF13659.1 gi|282164224|ref|YP_003356609.1| - 1.6e-14 53.9 0.0 3.7e-14 52.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TaqI_C PF12950.2 gi|282164224|ref|YP_003356609.1| - 1.8e-09 37.3 0.0 5.3e-09 35.8 0.0 1.8 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain UPF0020 PF01170.13 gi|282164224|ref|YP_003356609.1| - 0.00061 19.4 0.0 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|282164224|ref|YP_003356609.1| - 0.032 13.6 0.0 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|282164224|ref|YP_003356609.1| - 0.15 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GHMP_kinases_C PF08544.8 gi|282164225|ref|YP_003356610.1| - 4.5e-05 23.5 0.0 0.0001 22.3 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|282164225|ref|YP_003356610.1| - 0.00038 20.4 1.1 0.0011 19.0 0.7 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain Nop PF01798.13 gi|282164226|ref|YP_003356611.1| - 1.4e-45 154.2 2.1 2e-45 153.7 1.4 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|282164226|ref|YP_003356611.1| - 2.9e-07 30.1 0.0 5.5e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 NOSIC (NUC001) domain Fibrillarin PF01269.12 gi|282164227|ref|YP_003356612.1| - 1.7e-64 216.8 0.0 2.2e-64 216.5 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_18 PF12847.2 gi|282164227|ref|YP_003356612.1| - 0.026 15.0 0.0 0.049 14.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282164227|ref|YP_003356612.1| - 0.059 13.3 0.1 0.26 11.3 0.1 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282164227|ref|YP_003356612.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PqqD PF05402.7 gi|282164228|ref|YP_003356613.1| - 5.7e-13 48.6 0.0 7.6e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) MttA_Hcf106 PF02416.11 gi|282164229|ref|YP_003356614.1| - 4.7e-13 48.0 0.1 5.2e-13 47.8 0.0 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family ABC_tran PF00005.22 gi|282164230|ref|YP_003356615.1| - 2.3e-33 115.4 0.0 3e-33 115.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|282164230|ref|YP_003356615.1| - 4.7e-18 65.2 0.1 7.8e-18 64.5 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|282164230|ref|YP_003356615.1| - 9.1e-12 45.5 0.0 2.9e-08 34.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|282164230|ref|YP_003356615.1| - 6.1e-06 25.6 0.0 1e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|282164230|ref|YP_003356615.1| - 0.0011 19.0 0.2 0.0074 16.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|282164230|ref|YP_003356615.1| - 0.0022 18.1 0.1 0.018 15.2 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|282164230|ref|YP_003356615.1| - 0.0025 16.9 0.2 0.069 12.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|282164230|ref|YP_003356615.1| - 0.0033 17.4 0.1 0.0064 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|282164230|ref|YP_003356615.1| - 0.0061 16.2 0.0 0.063 13.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.20 gi|282164230|ref|YP_003356615.1| - 0.0087 15.5 0.0 0.0087 15.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|282164230|ref|YP_003356615.1| - 0.033 13.6 0.0 4 6.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|282164230|ref|YP_003356615.1| - 0.058 13.3 0.0 0.29 11.0 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit PRK PF00485.13 gi|282164230|ref|YP_003356615.1| - 0.067 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.1 gi|282164230|ref|YP_003356615.1| - 0.069 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|282164230|ref|YP_003356615.1| - 0.073 13.3 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|282164230|ref|YP_003356615.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Sigma54_activat PF00158.21 gi|282164230|ref|YP_003356615.1| - 0.13 11.7 0.1 1.7 8.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_13 PF13166.1 gi|282164230|ref|YP_003356615.1| - 0.35 9.2 1.2 2.5 6.4 0.0 2.4 2 1 1 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|282164231|ref|YP_003356616.1| - 1.8e-28 99.5 0.0 2.5e-28 99.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|282164231|ref|YP_003356616.1| - 5.9e-21 74.5 0.6 1.1e-20 73.7 0.4 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|282164231|ref|YP_003356616.1| - 2.1e-06 27.8 0.1 2.4e-05 24.4 0.0 2.0 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|282164231|ref|YP_003356616.1| - 0.0005 19.3 0.0 0.00087 18.5 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.20 gi|282164231|ref|YP_003356616.1| - 0.0043 16.5 0.1 0.0083 15.6 0.1 1.5 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.2 gi|282164231|ref|YP_003356616.1| - 0.033 13.6 0.3 7.1 5.9 0.0 2.7 2 1 0 3 3 3 0 AAA-like domain AAA_25 PF13481.1 gi|282164231|ref|YP_003356616.1| - 0.075 12.4 0.2 0.2 11.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|282164231|ref|YP_003356616.1| - 0.076 13.2 0.1 0.49 10.6 0.0 2.1 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AIG1 PF04548.11 gi|282164231|ref|YP_003356616.1| - 0.084 11.9 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 AIG1 family BPD_transp_1 PF00528.17 gi|282164232|ref|YP_003356617.1| - 1.7e-37 128.7 7.4 1.7e-37 128.7 5.1 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|282164232|ref|YP_003356617.1| - 1.5e-12 46.6 1.4 1.5e-12 46.6 1.0 2.9 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF3899 PF13038.1 gi|282164232|ref|YP_003356617.1| - 0.058 13.5 0.4 0.058 13.5 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) T2SF PF00482.18 gi|282164232|ref|YP_003356617.1| - 0.13 12.1 1.8 15 5.5 0.0 3.0 2 1 1 3 3 3 0 Type II secretion system (T2SS), protein F MFS_1_like PF12832.2 gi|282164232|ref|YP_003356617.1| - 0.26 11.1 5.1 0.95 9.2 3.5 2.1 1 1 0 1 1 1 0 MFS_1 like family DUF4179 PF13786.1 gi|282164232|ref|YP_003356617.1| - 0.65 10.2 3.5 12 6.2 0.2 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) MerE PF05052.7 gi|282164232|ref|YP_003356617.1| - 0.84 9.6 4.5 0.23 11.4 0.4 2.0 2 0 0 2 2 2 0 MerE protein BPD_transp_1 PF00528.17 gi|282164233|ref|YP_003356618.1| - 7.8e-43 146.1 13.8 7.8e-43 146.1 9.6 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|282164234|ref|YP_003356619.1| - 8.9e-82 274.8 7.2 1.2e-81 274.4 5.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle PALP PF00291.20 gi|282164235|ref|YP_003356620.1| - 1.7e-68 231.1 3.7 2e-68 230.9 2.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PK_C PF02887.11 gi|282164235|ref|YP_003356620.1| - 0.034 13.7 0.4 0.17 11.4 0.0 2.2 2 1 0 2 2 2 0 Pyruvate kinase, alpha/beta domain zinc_ribbon_2 PF13240.1 gi|282164235|ref|YP_003356620.1| - 2.3 7.7 6.0 1.6 8.3 2.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Cation_ATPase_C PF00689.16 gi|282164236|ref|YP_003356621.1| - 0.022 14.2 2.1 0.036 13.6 1.5 1.3 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF4149 PF13664.1 gi|282164236|ref|YP_003356621.1| - 0.031 14.3 2.4 0.05 13.6 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) NHL PF01436.16 gi|282164238|ref|YP_003356623.1| - 0.19 11.7 11.5 2.4 8.2 0.0 4.9 6 0 0 6 6 6 0 NHL repeat FrhB_FdhB_C PF04432.8 gi|282164239|ref|YP_003356624.1| - 2.8e-40 137.3 0.8 6.1e-40 136.2 0.5 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|282164239|ref|YP_003356624.1| - 1.4e-23 82.5 0.3 2.6e-23 81.6 0.2 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.1 gi|282164239|ref|YP_003356624.1| - 2.2e-08 33.7 12.8 0.00014 21.5 0.1 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282164239|ref|YP_003356624.1| - 6.1e-08 32.5 17.4 1.2e-07 31.5 10.7 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282164239|ref|YP_003356624.1| - 2.3e-07 30.1 13.6 9.1e-05 21.8 2.8 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282164239|ref|YP_003356624.1| - 7.2e-06 25.6 12.5 0.00022 20.9 2.4 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|282164239|ref|YP_003356624.1| - 3e-05 24.4 5.7 0.081 13.5 0.1 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|282164239|ref|YP_003356624.1| - 5.1e-05 23.5 16.6 5.1e-05 23.5 11.5 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282164239|ref|YP_003356624.1| - 7.8e-05 23.0 19.6 0.0035 17.7 5.9 3.4 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282164239|ref|YP_003356624.1| - 0.00053 20.3 21.5 0.0015 18.9 13.2 3.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282164239|ref|YP_003356624.1| - 0.00073 19.3 27.9 0.014 15.2 1.3 3.9 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|282164239|ref|YP_003356624.1| - 0.00084 19.5 22.6 0.006 16.8 13.0 3.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282164239|ref|YP_003356624.1| - 0.0016 18.8 13.1 0.042 14.2 0.6 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|282164239|ref|YP_003356624.1| - 0.016 15.5 3.5 0.016 15.5 2.4 4.0 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|282164239|ref|YP_003356624.1| - 0.056 14.0 3.7 0.056 14.0 2.6 3.9 4 1 1 5 5 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282164239|ref|YP_003356624.1| - 1.1 9.1 23.6 11 5.9 13.9 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282164239|ref|YP_003356624.1| - 4.9 7.9 20.2 1.4 9.7 0.9 3.6 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Molybdopterin PF00384.17 gi|282164240|ref|YP_003356625.1| - 4.9e-91 305.6 0.0 5.9e-91 305.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|282164240|ref|YP_003356625.1| - 1.9e-32 111.3 0.0 3.7e-32 110.4 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|282164240|ref|YP_003356625.1| - 2.5e-22 78.4 1.0 5.1e-22 77.4 0.7 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain GXGXG PF01493.14 gi|282164241|ref|YP_003356626.1| - 3.8e-32 110.9 22.0 7e-32 110.0 15.2 1.4 1 1 0 1 1 1 1 GXGXG motif Amidohydro_3 PF07969.6 gi|282164242|ref|YP_003356627.1| - 1.8e-61 208.6 0.3 2.2e-61 208.3 0.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.15 gi|282164242|ref|YP_003356627.1| - 7.6e-10 38.9 0.3 0.00032 20.4 0.0 2.6 2 1 0 3 3 3 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|282164242|ref|YP_003356627.1| - 1.1e-09 37.9 0.1 1.1e-09 37.9 0.1 2.5 4 0 0 4 4 4 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|282164242|ref|YP_003356627.1| - 3.5e-06 27.2 0.2 0.0089 16.0 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase Phage_RpbA PF10789.4 gi|282164242|ref|YP_003356627.1| - 0.12 12.2 0.0 0.32 10.8 0.0 1.7 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA Molybdopterin PF00384.17 gi|282164243|ref|YP_003356628.1| - 2.5e-10 39.6 0.0 5.7e-07 28.6 0.0 2.7 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|282164244|ref|YP_003356629.1| - 2.3e-15 56.3 0.0 2.8e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FlpD PF02662.11 gi|282164245|ref|YP_003356630.1| - 9.8e-52 173.8 0.0 1.2e-51 173.5 0.0 1.1 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|282164246|ref|YP_003356631.1| - 7.4e-15 53.8 41.3 7.2e-06 25.3 2.1 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282164246|ref|YP_003356631.1| - 1.1e-14 53.9 30.6 1.1e-08 34.8 5.9 4.1 4 0 0 4 4 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282164246|ref|YP_003356631.1| - 2.2e-12 47.1 39.0 5.3e-09 36.3 8.0 4.1 2 1 3 5 5 4 3 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|282164246|ref|YP_003356631.1| - 5.2e-12 46.0 0.3 4.2e-10 39.8 0.2 3.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_16 PF13484.1 gi|282164246|ref|YP_003356631.1| - 3.5e-10 40.4 23.5 0.014 16.1 0.8 4.9 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|282164246|ref|YP_003356631.1| - 6.2e-10 38.7 32.3 0.00029 20.5 8.4 4.4 4 1 1 5 5 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282164246|ref|YP_003356631.1| - 9.1e-10 38.6 37.3 3.8e-06 27.0 8.1 4.7 4 1 2 6 6 6 5 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282164246|ref|YP_003356631.1| - 1.6e-09 37.6 24.1 2.5e-05 24.1 3.8 3.7 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282164246|ref|YP_003356631.1| - 3e-09 37.0 20.5 1.5e-05 25.2 2.2 4.5 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282164246|ref|YP_003356631.1| - 4.4e-08 32.6 44.2 0.0013 18.4 1.8 5.2 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_18 PF13746.1 gi|282164246|ref|YP_003356631.1| - 4.8e-06 26.8 31.3 0.15 12.5 3.2 5.5 5 0 0 5 5 5 3 4Fe-4S dicluster domain FAD_oxidored PF12831.2 gi|282164246|ref|YP_003356631.1| - 1.1e-05 24.7 0.0 1.1e-05 24.7 0.0 2.0 2 0 0 2 2 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|282164246|ref|YP_003356631.1| - 1.7e-05 23.8 0.1 0.0054 15.6 0.1 2.8 2 1 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|282164246|ref|YP_003356631.1| - 2.6e-05 23.2 0.2 5.7e-05 22.1 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|282164246|ref|YP_003356631.1| - 4.6e-05 22.4 0.0 9.9e-05 21.3 0.0 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Fer4_2 PF12797.2 gi|282164246|ref|YP_003356631.1| - 7.4e-05 22.4 42.8 0.14 12.1 2.3 5.1 5 0 0 5 5 4 4 4Fe-4S binding domain NAD_binding_8 PF13450.1 gi|282164246|ref|YP_003356631.1| - 0.00013 21.9 0.0 0.0003 20.7 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|282164246|ref|YP_003356631.1| - 0.00035 20.6 0.0 0.0029 17.6 0.0 2.4 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|282164246|ref|YP_003356631.1| - 0.00041 19.5 0.0 0.00089 18.4 0.0 1.5 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|282164246|ref|YP_003356631.1| - 0.0049 15.4 0.3 0.0088 14.5 0.2 1.4 1 0 0 1 1 1 1 HI0933-like protein Fer4_15 PF13459.1 gi|282164246|ref|YP_003356631.1| - 0.0052 17.3 29.2 1.7 9.2 0.4 5.0 3 1 1 4 4 4 3 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|282164246|ref|YP_003356631.1| - 0.02 15.2 2.1 0.02 15.2 1.5 6.0 6 0 0 6 6 5 0 4Fe-4S binding domain FAD_binding_3 PF01494.14 gi|282164246|ref|YP_003356631.1| - 0.038 13.0 0.2 0.065 12.2 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.7 gi|282164246|ref|YP_003356631.1| - 0.047 12.6 0.0 1.3 7.9 0.0 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|282164246|ref|YP_003356631.1| - 0.12 12.7 0.1 0.44 10.9 0.0 2.0 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase CCG PF02754.11 gi|282164247|ref|YP_003356632.1| - 3.1e-33 113.6 4.1 3.7e-19 68.4 0.1 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|282164248|ref|YP_003356633.1| - 1.4e-11 44.2 8.9 2e-11 43.7 6.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282164248|ref|YP_003356633.1| - 1.6e-10 41.1 9.1 2.6e-10 40.5 6.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282164248|ref|YP_003356633.1| - 6.1e-07 29.6 7.8 1.2e-06 28.7 5.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282164248|ref|YP_003356633.1| - 9.3e-05 23.1 1.9 0.36 11.6 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|282164248|ref|YP_003356633.1| - 0.00028 20.6 10.5 0.00072 19.3 7.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282164248|ref|YP_003356633.1| - 0.0004 20.7 9.8 0.00088 19.6 6.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282164248|ref|YP_003356633.1| - 0.0017 18.7 12.0 0.14 12.5 2.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282164248|ref|YP_003356633.1| - 0.0064 16.3 1.6 0.0064 16.3 1.1 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282164248|ref|YP_003356633.1| - 0.0081 15.9 6.0 0.017 14.9 4.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282164248|ref|YP_003356633.1| - 0.015 15.1 12.3 0.16 11.9 2.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain ATP-sulfurylase PF01747.12 gi|282164248|ref|YP_003356633.1| - 0.02 14.2 0.0 0.031 13.5 0.0 1.3 1 0 0 1 1 1 0 ATP-sulfurylase Fer4_4 PF12800.2 gi|282164248|ref|YP_003356633.1| - 0.021 15.1 11.3 0.33 11.4 2.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|282164248|ref|YP_003356633.1| - 0.067 12.8 5.6 0.32 10.6 0.1 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TGT PF01702.13 gi|282164248|ref|YP_003356633.1| - 0.072 12.3 0.4 0.1 11.8 0.3 1.1 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase Fer4 PF00037.22 gi|282164248|ref|YP_003356633.1| - 0.65 9.6 13.8 2.9 7.6 1.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|282164249|ref|YP_003356634.1| - 3.2e-44 146.8 85.6 4.8e-08 32.2 2.6 8.7 8 1 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282164249|ref|YP_003356634.1| - 2.8e-36 123.6 66.9 5.4e-11 42.6 7.3 5.3 3 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282164249|ref|YP_003356634.1| - 1.3e-30 104.9 65.9 1.9e-08 33.9 5.8 6.4 2 1 6 8 8 8 8 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282164249|ref|YP_003356634.1| - 1.2e-29 100.3 75.5 6e-05 22.7 2.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_6 PF12837.2 gi|282164249|ref|YP_003356634.1| - 1.2e-28 97.7 80.7 1.1e-05 25.0 1.8 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282164249|ref|YP_003356634.1| - 2.6e-25 88.0 64.8 3.3e-05 23.6 7.5 6.4 5 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282164249|ref|YP_003356634.1| - 4.5e-25 88.1 65.3 1.3e-07 32.2 6.5 5.9 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|282164249|ref|YP_003356634.1| - 2.9e-24 85.0 73.0 1.7e-07 31.4 7.8 6.6 3 2 5 8 8 8 8 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282164249|ref|YP_003356634.1| - 1.5e-19 69.7 62.5 5.1e-06 26.4 5.2 5.4 2 2 4 6 6 6 6 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282164249|ref|YP_003356634.1| - 2.4e-15 56.8 55.2 0.0049 17.3 0.6 8.4 8 0 0 8 8 8 6 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|282164249|ref|YP_003356634.1| - 4e-13 49.4 60.9 0.00037 20.7 4.4 6.8 2 2 6 8 8 8 7 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282164249|ref|YP_003356634.1| - 8.9e-13 47.4 78.8 0.00012 22.0 1.5 8.2 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_3 PF12798.2 gi|282164249|ref|YP_003356634.1| - 9e-08 32.1 102.5 0.15 12.7 4.6 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_13 PF13370.1 gi|282164249|ref|YP_003356634.1| - 4.5e-06 26.9 77.0 0.18 12.2 2.5 8.2 8 0 0 8 8 8 7 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|282164249|ref|YP_003356634.1| - 3.6e-05 24.0 71.8 0.049 14.0 2.1 8.2 5 2 3 8 8 8 5 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|282164249|ref|YP_003356634.1| - 0.0012 18.6 51.4 0.11 12.3 10.5 5.3 2 2 3 5 5 5 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282164250|ref|YP_003356635.1| - 7.9e-15 53.7 18.2 1e-08 34.3 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282164250|ref|YP_003356635.1| - 5.6e-13 49.4 15.8 1.5e-09 38.4 5.3 1.8 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|282164250|ref|YP_003356635.1| - 2.3e-12 47.0 8.8 4.8e-12 46.0 6.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282164250|ref|YP_003356635.1| - 6.6e-12 44.7 15.8 8.4e-07 28.6 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282164250|ref|YP_003356635.1| - 6.6e-12 44.6 14.6 1.9e-06 27.4 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282164250|ref|YP_003356635.1| - 3.6e-11 42.6 6.2 1.6e-05 24.6 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282164250|ref|YP_003356635.1| - 9.1e-10 38.2 11.9 2.5e-09 36.8 8.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282164250|ref|YP_003356635.1| - 2.5e-09 37.2 8.6 4.3e-09 36.4 6.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282164250|ref|YP_003356635.1| - 3.2e-07 30.1 11.9 0.0022 18.1 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|282164250|ref|YP_003356635.1| - 4.8e-06 27.0 9.0 0.001 19.5 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|282164250|ref|YP_003356635.1| - 1e-05 25.8 11.0 0.018 15.4 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282164250|ref|YP_003356635.1| - 2.3e-05 24.3 12.5 0.00025 21.0 9.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|282164250|ref|YP_003356635.1| - 3.7e-05 23.9 21.4 0.0081 16.6 5.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|282164250|ref|YP_003356635.1| - 3.8e-05 23.9 9.8 0.00025 21.3 6.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|282164250|ref|YP_003356635.1| - 0.0018 18.1 3.5 0.011 15.6 2.4 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282164250|ref|YP_003356635.1| - 0.038 14.3 12.7 0.13 12.6 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF164 PF02591.10 gi|282164250|ref|YP_003356635.1| - 0.11 12.3 4.8 3.2 7.6 0.3 2.3 2 0 0 2 2 2 0 Putative zinc ribbon domain Me-amine-dh_L PF02975.9 gi|282164250|ref|YP_003356635.1| - 1.2 9.1 6.7 2.6 8.0 0.4 1.9 1 1 1 2 2 2 0 Methylamine dehydrogenase, L chain Fer4_20 PF14691.1 gi|282164250|ref|YP_003356635.1| - 1.2 8.8 8.1 2 8.0 5.6 1.4 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF1905 PF08922.6 gi|282164251|ref|YP_003356636.1| - 1.9e-15 56.1 0.0 3e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1905) OmdA PF13376.1 gi|282164251|ref|YP_003356636.1| - 1.4e-11 43.8 0.2 2.8e-11 42.9 0.1 1.4 1 0 0 1 1 1 1 Bacteriocin-protection, YdeI or OmpD-Associated TcdB_N PF12918.2 gi|282164251|ref|YP_003356636.1| - 0.18 11.9 1.1 0.29 11.2 0.8 1.2 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain VWA_2 PF13519.1 gi|282164252|ref|YP_003356637.1| - 3e-11 43.7 0.0 9.1e-11 42.1 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|282164252|ref|YP_003356637.1| - 1.8e-10 40.7 0.0 3.5e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|282164252|ref|YP_003356637.1| - 2.3e-10 40.4 0.0 3.8e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|282164252|ref|YP_003356637.1| - 0.095 11.8 0.3 0.82 8.7 0.2 2.1 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein HD_4 PF13328.1 gi|282164254|ref|YP_003356639.1| - 1.9e-12 47.1 0.2 2.3e-12 46.9 0.2 1.1 1 0 0 1 1 1 1 HD domain RNase_T PF00929.19 gi|282164255|ref|YP_003356640.1| - 1.2e-07 32.1 0.0 2e-07 31.4 0.0 1.4 1 1 0 1 1 1 1 Exonuclease Lactamase_B_2 PF12706.2 gi|282164256|ref|YP_003356641.1| - 3e-10 39.9 0.0 6.6e-08 32.3 0.0 2.4 1 1 0 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|282164256|ref|YP_003356641.1| - 4.3e-06 26.4 0.1 4.3e-06 26.4 0.1 2.0 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B PF00753.22 gi|282164256|ref|YP_003356641.1| - 9.7e-06 25.3 0.1 4.3e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|282164256|ref|YP_003356641.1| - 0.00069 19.3 0.0 0.018 14.7 0.0 2.7 3 0 0 3 3 3 1 Beta-lactamase superfamily domain DUF2130 PF09903.4 gi|282164257|ref|YP_003356642.1| - 2.9e-66 222.9 0.8 2.9e-66 222.9 0.6 2.9 1 1 2 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2130) T2SM PF04612.7 gi|282164257|ref|YP_003356642.1| - 7.8 6.2 9.7 12 5.6 0.1 2.9 3 1 1 4 4 4 0 Type II secretion system (T2SS), protein M HTH_20 PF12840.2 gi|282164258|ref|YP_003356643.1| - 0.00025 20.7 0.0 0.00041 20.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|282164258|ref|YP_003356643.1| - 0.015 15.2 0.2 0.09 12.6 0.0 2.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|282164258|ref|YP_003356643.1| - 0.035 13.7 0.1 0.096 12.4 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SapB_1 PF05184.10 gi|282164258|ref|YP_003356643.1| - 0.1 12.4 1.4 0.91 9.4 0.2 3.0 2 0 0 2 2 2 0 Saposin-like type B, region 1 DUF4430 PF14478.1 gi|282164258|ref|YP_003356643.1| - 0.11 12.5 0.1 0.29 11.1 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4430) HTH_IclR PF09339.5 gi|282164258|ref|YP_003356643.1| - 0.12 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain GPP34 PF05719.6 gi|282164259|ref|YP_003356644.1| - 0.12 12.4 0.2 13 5.8 0.0 2.2 1 1 1 2 2 2 0 Golgi phosphoprotein 3 (GPP34) TPR_11 PF13414.1 gi|282164260|ref|YP_003356645.1| - 1.5e-47 159.1 19.0 2.2e-12 46.4 0.2 6.0 3 2 2 6 6 6 5 TPR repeat TPR_16 PF13432.1 gi|282164260|ref|YP_003356645.1| - 2.8e-47 158.4 8.3 5.6e-11 42.8 0.1 6.0 3 2 3 6 6 6 5 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164260|ref|YP_003356645.1| - 2.1e-45 150.5 13.5 2.3e-06 26.9 0.0 9.0 10 0 0 10 10 8 8 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282164260|ref|YP_003356645.1| - 2.2e-45 148.9 10.9 1.1e-06 28.0 0.1 9.6 9 1 1 10 10 10 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282164260|ref|YP_003356645.1| - 1.2e-36 121.7 10.0 6.5e-05 22.8 0.0 9.4 9 0 0 9 9 9 7 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282164260|ref|YP_003356645.1| - 1.6e-33 114.8 15.8 2.5e-05 24.4 0.0 6.8 2 2 5 7 7 7 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164260|ref|YP_003356645.1| - 5.6e-33 110.4 7.7 5e-07 29.7 0.0 8.8 1 1 8 9 9 9 9 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282164260|ref|YP_003356645.1| - 1.7e-31 105.6 14.8 0.0026 17.4 0.0 8.7 7 1 1 8 8 8 7 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282164260|ref|YP_003356645.1| - 2.1e-28 98.0 25.4 8.3e-08 32.0 0.1 6.2 1 1 6 7 7 7 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282164260|ref|YP_003356645.1| - 1.4e-21 76.1 8.2 0.00043 20.0 0.0 5.8 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282164260|ref|YP_003356645.1| - 1.7e-20 71.9 19.4 0.0046 17.3 0.0 8.8 9 1 0 9 9 9 6 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282164260|ref|YP_003356645.1| - 8e-15 53.3 10.3 0.0021 17.6 0.0 8.4 8 0 0 8 8 8 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282164260|ref|YP_003356645.1| - 5.2e-14 52.1 9.1 0.01 15.9 0.1 7.1 1 1 7 8 8 8 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|282164260|ref|YP_003356645.1| - 5.4e-14 52.0 13.2 7.4e-07 29.2 0.1 4.8 3 1 2 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.9 gi|282164260|ref|YP_003356645.1| - 7e-10 38.3 8.9 0.5 10.9 0.1 6.2 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_21 PF09976.4 gi|282164260|ref|YP_003356645.1| - 1e-06 28.7 12.1 0.013 15.4 0.3 4.8 4 1 1 5 5 5 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|282164260|ref|YP_003356645.1| - 5.4e-06 25.4 8.5 0.0094 14.7 0.4 3.9 1 1 3 4 4 4 3 NMDA receptor-regulated protein 1 TOM20_plant PF06552.7 gi|282164260|ref|YP_003356645.1| - 7.6e-06 25.6 3.2 0.0052 16.3 0.1 4.4 2 2 3 5 5 5 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_10 PF13374.1 gi|282164260|ref|YP_003356645.1| - 1.4e-05 24.8 17.2 0.49 10.3 0.3 6.7 8 0 0 8 8 8 2 Tetratricopeptide repeat BTAD PF03704.12 gi|282164260|ref|YP_003356645.1| - 3.7e-05 24.0 2.3 0.44 10.8 0.2 3.8 2 2 1 3 3 3 1 Bacterial transcriptional activator domain TPR_3 PF07720.7 gi|282164260|ref|YP_003356645.1| - 5.7e-05 22.8 6.4 0.49 10.2 0.0 4.7 4 0 0 4 4 4 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|282164260|ref|YP_003356645.1| - 0.00026 20.8 3.8 0.19 11.5 0.2 4.5 5 0 0 5 5 3 1 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.1 gi|282164260|ref|YP_003356645.1| - 0.0011 18.1 7.5 0.89 8.5 0.2 4.4 1 1 4 5 5 5 1 Tetratricopeptide repeat RPN7 PF10602.4 gi|282164260|ref|YP_003356645.1| - 0.0054 16.1 3.2 0.51 9.7 0.1 3.7 1 1 2 3 3 3 1 26S proteasome subunit RPN7 SHNi-TPR PF10516.4 gi|282164260|ref|YP_003356645.1| - 0.0094 15.1 1.5 30 3.9 0.0 5.1 6 0 0 6 6 6 0 SHNi-TPR Apc5 PF12862.2 gi|282164260|ref|YP_003356645.1| - 0.029 14.1 1.6 58 3.6 0.0 4.3 2 2 1 3 3 3 0 Anaphase-promoting complex subunit 5 TPR_11 PF13414.1 gi|282164261|ref|YP_003356646.1| - 5.2e-126 410.4 76.2 2e-13 49.7 0.0 14.7 5 5 13 18 18 18 18 TPR repeat TPR_2 PF07719.12 gi|282164261|ref|YP_003356646.1| - 4.3e-102 326.0 43.8 3.3e-07 29.7 0.1 23.5 24 0 0 24 24 24 19 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164261|ref|YP_003356646.1| - 7.2e-92 297.6 46.4 1.5e-06 27.5 0.4 22.6 24 0 0 24 24 24 18 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282164261|ref|YP_003356646.1| - 8.4e-82 262.7 34.1 1.8e-07 30.8 0.3 20.9 22 0 0 22 22 21 14 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282164261|ref|YP_003356646.1| - 1.6e-81 267.5 34.0 1.3e-09 38.4 0.0 13.8 7 4 8 16 16 16 13 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164261|ref|YP_003356646.1| - 3.3e-60 195.0 20.6 0.0002 21.7 0.1 18.9 4 4 15 19 19 19 14 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282164261|ref|YP_003356646.1| - 8.1e-59 191.0 37.2 0.0014 18.2 0.0 20.8 18 4 4 22 22 21 13 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282164261|ref|YP_003356646.1| - 8.9e-55 182.5 46.5 3.8e-07 29.9 1.1 13.4 4 4 11 15 15 15 14 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282164261|ref|YP_003356646.1| - 2.8e-52 174.9 32.1 3.3e-07 30.5 0.6 12.5 7 4 7 14 14 14 11 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282164261|ref|YP_003356646.1| - 8.1e-27 93.1 31.5 0.01 15.9 0.0 12.9 8 4 5 13 13 13 9 Tetratricopeptide repeat Apc3 PF12895.2 gi|282164261|ref|YP_003356646.1| - 7.1e-24 83.7 18.7 0.00076 19.5 0.0 8.9 6 3 2 8 8 8 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|282164261|ref|YP_003356646.1| - 6.3e-23 78.7 19.0 0.068 12.9 0.0 16.3 19 0 0 19 19 19 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282164261|ref|YP_003356646.1| - 8.5e-23 79.2 30.2 0.09 13.2 0.2 15.7 18 0 0 18 18 16 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282164261|ref|YP_003356646.1| - 4.2e-21 74.5 9.6 0.00074 19.3 0.0 9.9 6 2 4 10 10 10 7 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|282164261|ref|YP_003356646.1| - 8.5e-14 51.5 20.9 0.28 10.7 0.1 12.1 4 3 8 13 13 13 2 Plant specific mitochondrial import receptor subunit TOM20 BTAD PF03704.12 gi|282164261|ref|YP_003356646.1| - 3e-13 50.3 22.6 7.9e-05 22.9 0.1 7.5 5 1 3 9 9 9 4 Bacterial transcriptional activator domain TPR_15 PF13429.1 gi|282164261|ref|YP_003356646.1| - 9.1e-13 47.8 13.5 1.2e-06 27.8 0.1 5.8 3 3 2 5 5 5 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282164261|ref|YP_003356646.1| - 8.1e-12 44.6 32.1 2.5 8.1 0.0 15.1 16 1 1 17 17 15 2 Tetratricopeptide repeat TPR_21 PF09976.4 gi|282164261|ref|YP_003356646.1| - 1.1e-07 31.8 19.3 0.0029 17.5 0.6 7.1 6 3 2 8 8 7 2 Tetratricopeptide repeat DUF627 PF04781.7 gi|282164261|ref|YP_003356646.1| - 2.9e-06 26.8 0.6 4.1 7.0 0.0 5.9 6 0 0 6 6 6 1 Protein of unknown function (DUF627) TPR_3 PF07720.7 gi|282164261|ref|YP_003356646.1| - 3.1e-05 23.6 2.2 4.7 7.1 0.2 6.9 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|282164261|ref|YP_003356646.1| - 3.4e-05 23.8 15.2 1.2 9.7 0.4 9.3 9 0 0 9 9 8 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|282164261|ref|YP_003356646.1| - 0.028 14.2 27.2 5.3 6.9 0.0 10.7 4 3 4 9 9 9 0 Anaphase-promoting complex subunit 5 Rapsyn_N PF10579.4 gi|282164261|ref|YP_003356646.1| - 0.034 13.9 0.1 4.3 7.2 0.0 4.5 5 1 1 6 6 5 0 Rapsyn N-terminal myristoylation and linker region MutS_III PF05192.13 gi|282164261|ref|YP_003356646.1| - 0.047 13.4 0.0 2.5 7.8 0.0 3.6 1 1 0 1 1 1 0 MutS domain III HLH PF00010.21 gi|282164261|ref|YP_003356646.1| - 0.078 12.6 2.5 3.4 7.4 0.2 3.6 3 0 0 3 3 3 0 Helix-loop-helix DNA-binding domain HrpB1_HrpK PF09613.5 gi|282164261|ref|YP_003356646.1| - 0.12 11.8 1.2 7.8 5.9 0.0 4.0 2 1 2 5 5 5 0 Bacterial type III secretion protein (HrpB1_HrpK) Fis1_TPR_C PF14853.1 gi|282164261|ref|YP_003356646.1| - 0.4 10.6 7.8 12 5.8 0.0 5.5 5 1 1 6 6 5 0 Fis1 C-terminal tetratricopeptide repeat GvpK PF05121.7 gi|282164261|ref|YP_003356646.1| - 1.8 8.4 6.9 9.9 6.0 0.0 5.4 7 0 0 7 7 6 0 Gas vesicle protein K DUF2225 PF09986.4 gi|282164261|ref|YP_003356646.1| - 3.5 7.0 8.7 2 7.8 0.3 4.1 2 2 2 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_11 PF13414.1 gi|282164262|ref|YP_003356647.1| - 3.4e-46 154.7 23.6 3.9e-12 45.6 0.1 6.9 3 3 5 8 8 8 8 TPR repeat TPR_17 PF13431.1 gi|282164262|ref|YP_003356647.1| - 5.5e-42 138.4 20.5 4.5e-06 26.4 0.1 9.4 9 1 1 10 10 9 8 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282164262|ref|YP_003356647.1| - 3.8e-39 129.4 27.8 1.2e-06 27.9 0.1 10.4 10 1 0 10 10 10 7 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282164262|ref|YP_003356647.1| - 5.9e-35 119.4 18.2 1.7e-07 31.4 1.7 6.4 4 3 2 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164262|ref|YP_003356647.1| - 3e-33 111.2 20.7 9.3e-07 28.9 0.4 10.1 3 3 7 10 10 10 9 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164262|ref|YP_003356647.1| - 3.2e-33 111.9 25.9 4.2e-07 29.3 0.2 9.5 9 1 0 9 9 9 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282164262|ref|YP_003356647.1| - 2.7e-32 110.6 17.6 1.1e-07 32.3 3.0 6.6 4 2 3 7 7 7 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282164262|ref|YP_003356647.1| - 7e-27 91.1 29.2 1.2e-05 24.7 0.2 9.2 6 3 3 9 9 9 6 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282164262|ref|YP_003356647.1| - 8.1e-24 82.4 13.5 0.0023 18.2 0.1 9.1 10 0 0 10 10 9 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282164262|ref|YP_003356647.1| - 5e-22 77.6 20.3 1.1e-05 25.2 2.3 5.6 2 2 1 4 4 4 4 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282164262|ref|YP_003356647.1| - 4e-21 74.9 10.3 0.00024 21.1 0.0 7.0 3 2 5 8 8 8 6 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282164262|ref|YP_003356647.1| - 4.5e-18 63.5 11.2 0.0038 16.9 0.6 7.4 5 2 2 7 7 7 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|282164262|ref|YP_003356647.1| - 6.5e-15 55.0 10.0 5.5e-05 23.2 0.2 4.8 3 2 3 6 6 6 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|282164262|ref|YP_003356647.1| - 2.3e-13 49.7 7.3 0.00012 21.8 0.6 5.0 3 2 0 4 4 4 3 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|282164262|ref|YP_003356647.1| - 3.9e-08 33.1 0.5 0.044 13.3 0.0 5.0 4 1 1 5 5 5 2 Plant specific mitochondrial import receptor subunit TOM20 TPR_15 PF13429.1 gi|282164262|ref|YP_003356647.1| - 2.9e-05 23.2 5.5 0.1 11.6 0.1 4.1 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_21 PF09976.4 gi|282164262|ref|YP_003356647.1| - 0.0011 18.9 5.5 0.21 11.5 0.2 3.3 2 2 0 2 2 2 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|282164262|ref|YP_003356647.1| - 0.0027 16.5 7.0 0.62 8.7 0.1 4.2 2 2 2 5 5 5 1 NMDA receptor-regulated protein 1 SNAP PF14938.1 gi|282164262|ref|YP_003356647.1| - 0.0031 16.7 7.4 0.17 11.0 0.8 4.1 2 2 2 4 4 4 1 Soluble NSF attachment protein, SNAP SHNi-TPR PF10516.4 gi|282164262|ref|YP_003356647.1| - 0.0039 16.3 8.1 16 4.8 0.2 5.3 6 0 0 6 6 5 0 SHNi-TPR DUF2981 PF11200.3 gi|282164262|ref|YP_003356647.1| - 0.011 14.8 0.0 0.015 14.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2981) ChAPs PF09295.5 gi|282164262|ref|YP_003356647.1| - 0.033 12.9 0.0 0.27 9.9 0.0 2.3 2 1 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) Sel1 PF08238.7 gi|282164262|ref|YP_003356647.1| - 0.041 14.5 9.4 2.1 9.1 0.5 4.3 4 0 0 4 4 4 0 Sel1 repeat NatB_MDM20 PF09797.4 gi|282164262|ref|YP_003356647.1| - 0.047 12.4 0.0 4 6.0 0.0 2.6 3 0 0 3 3 3 0 N-acetyltransferase B complex (NatB) non catalytic subunit PG_binding_4 PF12229.3 gi|282164262|ref|YP_003356647.1| - 0.092 12.9 0.3 0.48 10.6 0.1 2.3 2 1 0 2 2 1 0 Putative peptidoglycan binding domain FAT PF02259.18 gi|282164262|ref|YP_003356647.1| - 0.1 11.5 0.2 0.22 10.4 0.1 1.6 1 0 0 1 1 1 0 FAT domain HrpB1_HrpK PF09613.5 gi|282164262|ref|YP_003356647.1| - 0.11 11.9 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) TPR_10 PF13374.1 gi|282164262|ref|YP_003356647.1| - 0.12 12.3 8.0 3.4 7.7 0.0 4.4 4 0 0 4 4 3 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|282164262|ref|YP_003356647.1| - 0.14 12.0 0.3 0.14 12.0 0.2 4.6 5 1 1 6 6 4 0 Fis1 C-terminal tetratricopeptide repeat PPTA PF01239.17 gi|282164262|ref|YP_003356647.1| - 0.19 11.1 0.9 23 4.5 0.3 3.8 4 0 0 4 4 3 0 Protein prenyltransferase alpha subunit repeat Peptidase_M3_N PF08439.5 gi|282164262|ref|YP_003356647.1| - 0.57 10.2 4.7 3.5 7.7 0.2 3.6 3 0 0 3 3 3 0 Oligopeptidase F CesA PF11439.3 gi|282164262|ref|YP_003356647.1| - 1.4 8.9 4.8 0.59 10.1 0.1 2.7 4 1 0 4 4 2 0 Type III secretion system filament chaperone CesA PPR PF01535.15 gi|282164262|ref|YP_003356647.1| - 3.4 7.8 8.8 2.6 8.1 0.0 4.8 6 0 0 6 6 6 0 PPR repeat TPR_4 PF07721.9 gi|282164262|ref|YP_003356647.1| - 4.5 7.9 8.7 19 6.0 0.0 5.4 7 0 0 7 7 6 0 Tetratricopeptide repeat MIT PF04212.13 gi|282164262|ref|YP_003356647.1| - 6.6 6.6 10.1 1.2 9.0 1.2 4.1 5 2 0 5 5 3 0 MIT (microtubule interacting and transport) domain RPN7 PF10602.4 gi|282164262|ref|YP_003356647.1| - 7.1 5.9 10.1 3.1 7.1 0.0 3.8 4 1 0 4 4 4 0 26S proteasome subunit RPN7 Plasmid_stabil PF05016.9 gi|282164263|ref|YP_003356648.1| - 0.0057 17.0 0.1 0.007 16.7 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein RHH_2 PF03693.9 gi|282164264|ref|YP_003356649.1| - 8.9e-05 22.5 0.1 0.00012 22.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) Unstab_antitox PF09720.5 gi|282164264|ref|YP_003356649.1| - 0.036 13.7 0.3 0.061 13.0 0.2 1.6 1 1 0 1 1 1 0 Putative addiction module component MltA PF03562.12 gi|282164264|ref|YP_003356649.1| - 0.059 13.1 0.0 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 MltA specific insert domain DUF2173 PF09941.4 gi|282164264|ref|YP_003356649.1| - 0.074 12.9 0.1 0.096 12.6 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) Sec2p PF06428.6 gi|282164265|ref|YP_003356650.1| - 0.035 13.9 0.2 0.063 13.1 0.1 1.4 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p DUF2201_N PF13203.1 gi|282164266|ref|YP_003356651.1| - 1e-41 143.0 0.0 1.3e-41 142.7 0.0 1.1 1 0 0 1 1 1 1 Putative metallopeptidase domain DUF2201 PF09967.4 gi|282164266|ref|YP_003356651.1| - 8.9e-23 80.6 0.0 1.4e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 VWA-like domain (DUF2201) AAA_5 PF07728.9 gi|282164267|ref|YP_003356652.1| - 0.0011 18.7 0.0 0.0034 17.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|282164267|ref|YP_003356652.1| - 0.02 14.5 0.0 0.079 12.5 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TPR_11 PF13414.1 gi|282164268|ref|YP_003356653.1| - 6.2e-11 41.7 3.6 1e-10 41.0 0.7 1.9 1 1 1 2 2 2 1 TPR repeat TPR_17 PF13431.1 gi|282164268|ref|YP_003356653.1| - 2.6e-08 33.4 2.2 1.2e-07 31.3 0.2 2.3 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164268|ref|YP_003356653.1| - 2.4e-07 30.0 4.2 0.00041 19.8 0.1 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282164268|ref|YP_003356653.1| - 2.7e-05 23.7 3.4 0.00082 19.1 0.1 2.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282164268|ref|YP_003356653.1| - 0.0018 18.9 0.8 0.0025 18.4 0.1 1.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164268|ref|YP_003356653.1| - 0.0048 17.4 0.2 0.28 11.9 0.1 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282164268|ref|YP_003356653.1| - 0.011 15.6 2.3 0.055 13.4 0.4 2.2 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282164268|ref|YP_003356653.1| - 0.028 14.2 0.4 0.49 10.3 0.0 2.5 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282164268|ref|YP_003356653.1| - 0.11 12.7 0.3 0.18 12.1 0.2 1.3 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282164268|ref|YP_003356653.1| - 0.14 11.9 1.4 22 5.1 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_11 PF13414.1 gi|282164269|ref|YP_003356654.1| - 2.3e-08 33.5 0.1 3.2e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 TPR repeat TPR_17 PF13431.1 gi|282164269|ref|YP_003356654.1| - 8.5e-08 31.8 0.1 5.1e-07 29.3 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282164269|ref|YP_003356654.1| - 8.6e-08 31.5 0.9 0.002 17.9 0.0 2.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282164269|ref|YP_003356654.1| - 2.6e-07 31.1 0.0 3.5e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282164269|ref|YP_003356654.1| - 4.4e-07 29.7 0.8 0.00028 20.7 0.0 1.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164269|ref|YP_003356654.1| - 2.1e-06 27.0 0.3 0.0042 16.6 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164269|ref|YP_003356654.1| - 1.7e-05 24.9 0.0 0.0075 16.8 0.0 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282164269|ref|YP_003356654.1| - 8.9e-05 22.6 0.2 0.0077 16.6 0.1 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282164269|ref|YP_003356654.1| - 0.00015 21.9 0.1 0.00021 21.5 0.1 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282164269|ref|YP_003356654.1| - 0.00064 19.3 0.7 0.53 10.1 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282164269|ref|YP_003356654.1| - 0.0073 16.1 0.0 0.0091 15.8 0.0 1.1 1 0 0 1 1 1 1 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|282164269|ref|YP_003356654.1| - 0.01 15.4 0.1 0.014 15.0 0.0 1.4 1 1 0 1 1 1 0 Plant specific mitochondrial import receptor subunit TOM20 Glyco_transf_7C PF02709.9 gi|282164269|ref|YP_003356654.1| - 0.076 12.4 0.0 0.099 12.1 0.0 1.2 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase SRI PF08236.6 gi|282164270|ref|YP_003356655.1| - 0.064 13.2 0.5 0.064 13.2 0.4 2.4 2 1 1 3 3 3 0 SRI (Set2 Rpb1 interacting) domain Phosphodiest PF01663.17 gi|282164271|ref|YP_003356656.1| - 4.6e-13 49.2 0.0 2.5e-11 43.5 0.0 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DEAD PF00270.24 gi|282164272|ref|YP_003356657.1| - 1.6e-17 63.5 0.0 2.6e-11 43.2 0.0 2.9 1 1 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|282164272|ref|YP_003356657.1| - 1.7e-15 56.6 0.0 5.7e-15 54.9 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|282164272|ref|YP_003356657.1| - 0.00053 20.5 0.4 0.002 18.6 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) PhnA_Zn_Ribbon PF08274.7 gi|282164272|ref|YP_003356657.1| - 1 9.2 7.5 12 5.7 0.1 4.7 4 0 0 4 4 4 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|282164272|ref|YP_003356657.1| - 1.4 8.9 23.2 6.5 6.7 1.2 6.6 7 0 0 7 7 7 0 Zinc ribbon domain Desulfoferrod_N PF06397.7 gi|282164272|ref|YP_003356657.1| - 3.1 7.2 9.4 0.44 9.9 0.4 3.2 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain ADK_lid PF05191.9 gi|282164272|ref|YP_003356657.1| - 9.5 5.9 21.6 0.12 12.1 1.7 4.8 5 0 0 5 5 5 0 Adenylate kinase, active site lid Hydrolase_3 PF08282.7 gi|282164275|ref|YP_003356660.1| - 0.0012 18.4 0.0 0.0056 16.2 0.0 1.8 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|282164275|ref|YP_003356660.1| - 0.06 13.2 0.0 0.076 12.9 0.0 1.2 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase MethyltransfD12 PF02086.10 gi|282164276|ref|YP_003356661.1| - 1.3e-57 195.2 9.5 1.5e-57 195.0 6.6 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.13 gi|282164277|ref|YP_003356662.1| - 3.7e-17 62.5 1.6 3.4e-10 39.7 0.4 2.0 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|282164277|ref|YP_003356662.1| - 3.7e-09 36.6 0.0 4.9e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282164277|ref|YP_003356662.1| - 1.9e-06 28.2 0.0 0.0067 16.8 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282164277|ref|YP_003356662.1| - 6.7e-06 25.7 0.1 8.8e-06 25.3 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|282164277|ref|YP_003356662.1| - 8.6e-05 22.1 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|282164277|ref|YP_003356662.1| - 0.009 16.5 0.0 0.013 16.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain HATPase_c PF02518.21 gi|282164279|ref|YP_003356664.1| - 1.2e-05 25.0 0.0 1.4e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TPR_11 PF13414.1 gi|282164280|ref|YP_003356665.1| - 2.4e-26 91.1 18.2 6.8e-11 41.6 0.2 5.0 2 1 2 5 5 5 5 TPR repeat TPR_2 PF07719.12 gi|282164280|ref|YP_003356665.1| - 2.6e-25 86.2 16.3 1.3e-05 24.6 0.8 7.5 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282164280|ref|YP_003356665.1| - 2.5e-21 75.8 25.6 6.5e-07 29.8 0.1 5.7 3 2 2 6 6 6 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282164280|ref|YP_003356665.1| - 1.4e-17 62.3 11.4 0.011 15.9 0.0 7.4 6 1 1 7 7 7 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164280|ref|YP_003356665.1| - 1.9e-16 59.0 23.9 2.1e-06 27.8 1.1 7.4 3 3 5 8 8 8 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282164280|ref|YP_003356665.1| - 5.5e-16 58.6 19.0 2.2e-06 27.9 0.0 5.3 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282164280|ref|YP_003356665.1| - 2.2e-13 48.9 2.1 0.0057 16.3 0.1 6.3 5 1 1 6 6 6 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282164280|ref|YP_003356665.1| - 1e-10 41.2 5.6 1.5 9.4 0.0 6.6 7 0 0 7 7 6 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164280|ref|YP_003356665.1| - 2.2e-10 39.6 17.5 9.4e-06 25.0 0.5 7.4 7 1 0 7 7 7 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282164280|ref|YP_003356665.1| - 3.3e-10 39.7 15.1 0.0093 15.8 0.2 4.6 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282164280|ref|YP_003356665.1| - 1.5e-06 27.5 6.4 0.048 13.4 0.1 5.5 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282164280|ref|YP_003356665.1| - 9.2e-05 22.4 9.5 0.025 14.7 0.0 5.6 2 1 3 6 6 5 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|282164280|ref|YP_003356665.1| - 0.0028 17.9 3.2 0.03 14.7 0.1 4.1 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282164280|ref|YP_003356665.1| - 0.027 14.3 21.1 1.1 9.1 0.6 4.7 3 2 2 5 5 5 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|282164280|ref|YP_003356665.1| - 0.035 14.2 0.5 0.035 14.2 0.4 3.5 3 2 1 4 4 4 0 Anaphase-promoting complex, cyclosome, subunit 3 DUF4398 PF14346.1 gi|282164280|ref|YP_003356665.1| - 0.067 13.2 13.2 4 7.5 1.1 3.8 3 1 1 4 4 4 0 Domain of unknown function (DUF4398) TPR_10 PF13374.1 gi|282164280|ref|YP_003356665.1| - 0.13 12.1 7.2 0.14 12.1 0.2 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|282164280|ref|YP_003356665.1| - 0.16 11.8 3.4 7.3 6.5 0.1 3.7 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat WSN PF02206.13 gi|282164280|ref|YP_003356665.1| - 0.18 11.6 0.0 0.37 10.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function TPR_21 PF09976.4 gi|282164280|ref|YP_003356665.1| - 0.5 10.3 0.1 0.5 10.3 0.0 3.1 4 0 0 4 4 4 0 Tetratricopeptide repeat NTP_transf_2 PF01909.18 gi|282164281|ref|YP_003356666.1| - 1.8e-11 44.2 0.7 2.3e-11 43.8 0.5 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.2 gi|282164281|ref|YP_003356666.1| - 0.086 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain HEPN PF05168.9 gi|282164282|ref|YP_003356667.1| - 6.7e-09 35.6 0.1 1.3e-08 34.7 0.0 1.6 1 1 0 1 1 1 1 HEPN domain PAS_4 PF08448.5 gi|282164284|ref|YP_003356669.1| - 6.2e-34 116.3 0.1 6.1e-11 42.3 0.0 5.3 5 0 0 5 5 5 3 PAS fold PAS_9 PF13426.1 gi|282164284|ref|YP_003356669.1| - 6.3e-32 110.0 0.1 1.9e-10 41.0 0.0 4.5 5 0 0 5 5 5 3 PAS domain GAF_2 PF13185.1 gi|282164284|ref|YP_003356669.1| - 5.2e-28 98.4 0.2 2.6e-16 60.4 0.0 3.0 3 0 0 3 3 3 2 GAF domain PAS_3 PF08447.6 gi|282164284|ref|YP_003356669.1| - 2.6e-25 88.3 0.0 2.8e-19 68.9 0.0 3.7 3 0 0 3 3 3 2 PAS fold PAS PF00989.19 gi|282164284|ref|YP_003356669.1| - 1.6e-22 79.4 0.4 7.5e-09 35.3 0.0 4.4 3 1 1 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|282164284|ref|YP_003356669.1| - 6.1e-20 70.9 0.0 1.1e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|282164284|ref|YP_003356669.1| - 4.4e-17 61.2 0.2 6e-06 25.9 0.0 3.7 3 0 0 3 3 3 3 PAS domain GAF PF01590.21 gi|282164284|ref|YP_003356669.1| - 4.7e-16 59.2 0.0 1.6e-08 34.8 0.0 2.6 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|282164284|ref|YP_003356669.1| - 2.2e-10 40.7 0.0 0.00077 19.5 0.0 3.0 3 0 0 3 3 3 2 GAF domain HATPase_c_2 PF13581.1 gi|282164284|ref|YP_003356669.1| - 1.1e-05 25.2 0.0 4.6e-05 23.1 0.0 2.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|282164285|ref|YP_003356670.1| - 7.1e-35 119.5 0.0 7.3e-11 42.3 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|282164285|ref|YP_003356670.1| - 2.9e-28 97.9 0.0 4.6e-09 36.0 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|282164285|ref|YP_003356670.1| - 2.3e-26 91.7 0.2 2.1e-07 30.9 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|282164285|ref|YP_003356670.1| - 3.2e-22 78.6 0.0 7e-08 32.4 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|282164285|ref|YP_003356670.1| - 4.1e-22 77.2 0.0 8.6e-06 25.4 0.0 3.5 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|282164285|ref|YP_003356670.1| - 1e-20 73.5 0.0 2e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|282164285|ref|YP_003356670.1| - 0.011 15.5 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain MEKHLA PF08670.6 gi|282164285|ref|YP_003356670.1| - 0.012 15.1 0.1 1.7 8.1 0.0 2.9 3 0 0 3 3 3 0 MEKHLA domain HATPase_c_5 PF14501.1 gi|282164285|ref|YP_003356670.1| - 0.038 13.7 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 GHKL domain PDDEXK_3 PF13366.1 gi|282164287|ref|YP_003356672.1| - 2.2e-43 147.0 0.1 2.5e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|282164287|ref|YP_003356672.1| - 0.0079 16.1 0.0 0.0097 15.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 Dimer_Tnp_Tn5 PF02281.11 gi|282164287|ref|YP_003356672.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase Tn5 dimerisation domain TPR_2 PF07719.12 gi|282164288|ref|YP_003356673.1| - 8.4e-25 84.6 5.0 4.8e-05 22.9 0.2 6.9 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|282164288|ref|YP_003356673.1| - 7.7e-24 83.1 9.0 1.8e-10 40.2 0.0 4.3 2 1 1 4 4 4 4 TPR repeat TPR_16 PF13432.1 gi|282164288|ref|YP_003356673.1| - 2.9e-20 72.4 9.8 5.7e-07 30.0 0.1 4.7 3 1 2 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282164288|ref|YP_003356673.1| - 8.8e-18 62.9 4.1 9.6e-05 22.2 0.0 7.0 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164288|ref|YP_003356673.1| - 9.3e-18 63.1 8.8 0.00071 19.9 0.2 6.0 2 2 3 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282164288|ref|YP_003356673.1| - 1.1e-16 60.8 3.8 0.00018 21.7 0.0 4.8 2 1 3 5 5 5 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164288|ref|YP_003356673.1| - 1.5e-15 56.0 7.5 0.00041 19.8 0.1 6.7 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282164288|ref|YP_003356673.1| - 3.1e-14 52.6 5.6 0.0011 18.8 0.0 4.4 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282164288|ref|YP_003356673.1| - 8.9e-14 50.1 1.4 0.053 13.3 0.0 4.8 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282164288|ref|YP_003356673.1| - 1.7e-11 44.0 4.6 9.3e-07 28.8 0.4 3.7 3 2 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282164288|ref|YP_003356673.1| - 5.2e-10 39.1 6.0 0.04 14.3 0.1 5.5 5 1 0 5 5 4 2 Tetratricopeptide repeat BTAD PF03704.12 gi|282164288|ref|YP_003356673.1| - 3.1e-06 27.5 0.7 0.088 13.1 0.0 3.2 3 0 0 3 3 3 1 Bacterial transcriptional activator domain TPR_9 PF13371.1 gi|282164288|ref|YP_003356673.1| - 4.2e-06 26.5 4.2 0.0072 16.1 0.0 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282164288|ref|YP_003356673.1| - 4.4e-06 26.0 5.4 0.27 11.1 0.0 4.7 5 0 0 5 5 5 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|282164288|ref|YP_003356673.1| - 5.9e-06 26.3 2.9 0.062 13.4 0.0 3.4 2 1 2 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 RPN7 PF10602.4 gi|282164288|ref|YP_003356673.1| - 0.0012 18.3 0.9 4 6.7 0.0 3.9 3 1 0 4 4 4 1 26S proteasome subunit RPN7 Apc5 PF12862.2 gi|282164288|ref|YP_003356673.1| - 0.0078 16.0 0.4 10 6.0 0.0 3.4 3 1 0 3 3 3 0 Anaphase-promoting complex subunit 5 TPR_15 PF13429.1 gi|282164288|ref|YP_003356673.1| - 0.013 14.5 0.8 9 5.2 0.0 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282164288|ref|YP_003356673.1| - 0.12 12.3 8.9 5.2 7.1 0.1 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_4 PF07721.9 gi|282164288|ref|YP_003356673.1| - 0.62 10.6 7.9 57 4.5 0.4 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat MazG PF03819.12 gi|282164289|ref|YP_003356674.1| - 6e-07 29.3 0.8 1.1e-06 28.5 0.5 1.4 1 1 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain dUTPase_2 PF08761.6 gi|282164289|ref|YP_003356674.1| - 0.0046 17.0 0.0 0.0053 16.8 0.0 1.1 1 0 0 1 1 1 1 dUTPase MazG-like PF12643.2 gi|282164289|ref|YP_003356674.1| - 0.047 13.6 0.1 0.062 13.2 0.1 1.3 1 1 0 1 1 1 0 MazG-like family DUF4258 PF14076.1 gi|282164290|ref|YP_003356675.1| - 0.00052 19.9 1.3 0.00059 19.7 0.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) DUF1694 PF07997.6 gi|282164290|ref|YP_003356675.1| - 0.033 14.1 0.0 8 6.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1694) DUF1523 PF07509.6 gi|282164290|ref|YP_003356675.1| - 0.1 11.7 0.1 0.11 11.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1523) Antitoxin-MazE PF04014.13 gi|282164291|ref|YP_003356676.1| - 1e-10 41.1 0.6 1.3e-10 40.7 0.4 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE zf-TFIIB PF13453.1 gi|282164291|ref|YP_003356676.1| - 0.008 15.3 4.7 0.015 14.4 3.3 1.5 1 1 0 1 1 1 1 Transcription factor zinc-finger zf-RING_2 PF13639.1 gi|282164291|ref|YP_003356676.1| - 0.019 14.7 0.8 0.027 14.3 0.5 1.3 1 0 0 1 1 1 0 Ring finger domain Rad50_zn_hook PF04423.9 gi|282164291|ref|YP_003356676.1| - 0.02 14.3 0.7 0.77 9.2 0.0 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif Gin PF10764.4 gi|282164291|ref|YP_003356676.1| - 0.027 14.1 4.2 0.089 12.5 2.9 1.8 1 1 0 1 1 1 0 Inhibitor of sigma-G Gin HypA PF01155.14 gi|282164291|ref|YP_003356676.1| - 0.1 12.2 1.3 0.17 11.5 0.9 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RecR PF02132.10 gi|282164291|ref|YP_003356676.1| - 0.17 11.3 3.0 5.7 6.4 0.3 2.2 2 0 0 2 2 2 0 RecR protein zf-C4_Topoisom PF01396.14 gi|282164291|ref|YP_003356676.1| - 0.17 11.4 1.3 8.1 6.0 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger YdjO PF14169.1 gi|282164291|ref|YP_003356676.1| - 0.18 11.3 0.4 0.18 11.3 0.3 2.2 2 0 0 2 2 2 0 Cold-inducible protein YdjO zinc-ribbons_6 PF07191.7 gi|282164291|ref|YP_003356676.1| - 0.2 11.4 3.3 0.53 10.1 2.3 1.7 1 1 0 1 1 1 0 zinc-ribbons Prok-RING_4 PF14447.1 gi|282164291|ref|YP_003356676.1| - 0.25 10.8 0.3 0.25 10.8 0.2 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 zf-C3HC4_3 PF13920.1 gi|282164291|ref|YP_003356676.1| - 0.43 10.2 4.0 3.2 7.4 0.5 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_4 PF13717.1 gi|282164291|ref|YP_003356676.1| - 0.82 9.4 4.0 9.8 5.9 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|282164291|ref|YP_003356676.1| - 1.1 9.0 6.2 1.3 8.8 0.8 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.1 gi|282164291|ref|YP_003356676.1| - 1.3 8.6 4.3 11 5.6 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|282164291|ref|YP_003356676.1| - 2.4 7.9 5.3 2 8.1 0.3 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF329 PF03884.9 gi|282164291|ref|YP_003356676.1| - 7 6.2 6.6 4.4 6.9 0.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF329) DUF3795 PF12675.2 gi|282164292|ref|YP_003356677.1| - 0.15 12.2 13.6 16 5.7 9.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3795) TPR_11 PF13414.1 gi|282164293|ref|YP_003356678.1| - 1.2e-41 140.2 12.4 1.4e-14 53.4 0.4 4.1 2 2 2 4 4 4 4 TPR repeat TPR_19 PF14559.1 gi|282164293|ref|YP_003356678.1| - 8.9e-32 109.2 20.8 4.3e-11 42.9 0.3 5.3 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282164293|ref|YP_003356678.1| - 1.5e-30 102.7 5.2 6.9e-06 25.8 0.1 5.9 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282164293|ref|YP_003356678.1| - 1.7e-29 99.2 5.2 3.3e-07 29.7 0.0 6.5 6 1 0 6 6 6 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164293|ref|YP_003356678.1| - 1.2e-28 97.4 7.2 1.5e-07 30.7 0.0 6.4 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282164293|ref|YP_003356678.1| - 1.5e-27 95.2 13.6 1.7e-09 37.5 0.4 4.6 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282164293|ref|YP_003356678.1| - 2.5e-27 94.8 5.5 5.4e-09 36.4 0.0 4.3 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164293|ref|YP_003356678.1| - 1.7e-26 90.2 4.2 6.3e-08 32.5 0.2 6.2 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282164293|ref|YP_003356678.1| - 8.7e-23 78.3 14.0 4.5e-06 26.0 0.1 6.7 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282164293|ref|YP_003356678.1| - 2.3e-15 55.8 7.3 0.0041 17.4 0.1 6.4 7 1 0 7 7 6 3 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282164293|ref|YP_003356678.1| - 1e-14 54.3 6.0 0.00027 20.9 0.6 5.1 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282164293|ref|YP_003356678.1| - 1.6e-13 50.2 1.2 5.2e-06 26.2 0.1 4.0 1 1 3 4 4 4 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|282164293|ref|YP_003356678.1| - 3.3e-12 46.3 0.6 0.00034 20.6 0.1 3.9 1 1 3 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|282164293|ref|YP_003356678.1| - 4.7e-12 44.7 2.3 0.027 14.2 0.0 6.1 4 2 2 6 6 6 3 Tetratricopeptide repeat TPR_15 PF13429.1 gi|282164293|ref|YP_003356678.1| - 5.6e-08 32.1 2.2 1.2e-06 27.8 0.1 2.4 1 1 1 3 3 3 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282164293|ref|YP_003356678.1| - 2.7e-07 30.2 5.9 0.25 11.3 0.0 5.2 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|282164293|ref|YP_003356678.1| - 7.2e-06 25.9 0.0 3.4 8.3 0.0 5.6 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|282164293|ref|YP_003356678.1| - 0.00063 19.7 5.5 0.12 12.3 0.1 3.8 2 1 2 4 4 4 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|282164293|ref|YP_003356678.1| - 0.0029 17.4 0.1 2.5 8.0 0.0 3.9 2 1 1 3 3 3 1 Anaphase-promoting complex subunit 5 NARP1 PF12569.3 gi|282164293|ref|YP_003356678.1| - 0.0039 16.0 0.8 0.0039 16.0 0.6 2.9 1 1 2 3 3 2 1 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|282164293|ref|YP_003356678.1| - 0.013 15.3 4.6 3.7 7.4 0.4 3.8 4 1 1 5 5 5 0 Fis1 C-terminal tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|282164293|ref|YP_003356678.1| - 0.026 14.7 0.8 1.2 9.3 0.1 2.9 2 1 0 3 3 3 0 Alkyl sulfatase dimerisation Sel1 PF08238.7 gi|282164293|ref|YP_003356678.1| - 0.048 14.3 2.2 44 4.8 0.0 4.3 5 0 0 5 5 3 0 Sel1 repeat PPR PF01535.15 gi|282164293|ref|YP_003356678.1| - 0.052 13.5 1.0 1.7 8.7 0.0 3.4 3 1 1 4 4 3 0 PPR repeat GAF PF01590.21 gi|282164294|ref|YP_003356679.1| - 1.9e-16 60.5 0.1 2.9e-16 59.9 0.1 1.3 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|282164294|ref|YP_003356679.1| - 1.1e-15 58.4 0.5 1.8e-15 57.7 0.3 1.4 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|282164294|ref|YP_003356679.1| - 1.3e-10 41.4 0.1 2.5e-10 40.5 0.1 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|282164294|ref|YP_003356679.1| - 1.3e-08 34.5 0.0 2.4e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RCC1 PF00415.13 gi|282164295|ref|YP_003356680.1| - 5.8e-46 154.4 23.7 5.1e-11 42.6 0.2 6.8 7 0 0 7 7 7 5 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.1 gi|282164295|ref|YP_003356680.1| - 8.1e-43 143.1 30.1 4.9e-09 35.5 0.2 7.4 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat Reg_prop PF07494.6 gi|282164295|ref|YP_003356680.1| - 0.036 14.0 8.0 45 4.5 0.1 5.8 6 0 0 6 6 6 0 Two component regulator propeller N6_N4_Mtase PF01555.13 gi|282164296|ref|YP_003356681.1| - 8.5e-46 156.3 0.0 1.2e-45 155.8 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|282164296|ref|YP_003356681.1| - 2.9e-15 56.3 0.0 2.6e-07 30.6 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|282164296|ref|YP_003356681.1| - 3.7e-05 23.3 0.0 0.0013 18.3 0.0 2.1 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|282164296|ref|YP_003356681.1| - 0.00057 19.5 0.0 0.066 12.8 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282164296|ref|YP_003356681.1| - 0.0067 16.8 0.1 5.8 7.4 0.0 2.5 3 0 0 3 3 3 2 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282164296|ref|YP_003356681.1| - 0.024 15.1 0.0 0.19 12.2 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain UbiA PF01040.13 gi|282164297|ref|YP_003356682.1| - 0.0032 16.7 25.5 0.046 12.9 17.7 2.0 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF2101 PF09874.4 gi|282164297|ref|YP_003356682.1| - 0.016 14.7 1.0 0.026 14.0 0.7 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) Na_Ca_ex PF01699.19 gi|282164298|ref|YP_003356683.1| - 2.1e-24 85.7 29.7 2.4e-13 49.8 6.6 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DIM PF08194.7 gi|282164298|ref|YP_003356683.1| - 0.049 13.5 0.3 0.32 10.9 0.2 2.4 1 0 0 1 1 1 0 DIM protein DUF2208 PF09973.4 gi|282164298|ref|YP_003356683.1| - 7.2 5.7 10.3 0.048 12.8 0.9 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2208) tRNA-synt_1c PF00749.16 gi|282164299|ref|YP_003356684.1| - 1.6e-61 207.6 0.0 2.1e-61 207.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|282164299|ref|YP_003356684.1| - 1e-21 77.3 0.0 3.2e-21 75.7 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain TruB-C_2 PF09157.6 gi|282164299|ref|YP_003356684.1| - 0.033 14.0 0.0 0.15 11.9 0.0 2.0 2 0 0 2 2 2 0 Pseudouridine synthase II TruB, C-terminal TetR_N PF00440.18 gi|282164300|ref|YP_003356685.1| - 1.9e-12 46.6 0.0 4.2e-12 45.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family ABC_tran PF00005.22 gi|282164301|ref|YP_003356686.1| - 4.9e-25 88.4 0.0 9.5e-25 87.4 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|282164301|ref|YP_003356686.1| - 3.4e-12 46.9 0.1 6.7e-05 22.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|282164301|ref|YP_003356686.1| - 1.6e-05 25.3 0.0 2.6e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|282164301|ref|YP_003356686.1| - 8.4e-05 22.9 0.0 0.00011 22.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|282164301|ref|YP_003356686.1| - 0.0042 16.5 0.1 0.73 9.2 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain SRP54 PF00448.17 gi|282164301|ref|YP_003356686.1| - 0.0048 16.3 0.0 0.0093 15.4 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|282164301|ref|YP_003356686.1| - 0.012 15.0 0.1 0.028 13.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|282164301|ref|YP_003356686.1| - 0.02 15.0 0.0 0.045 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|282164301|ref|YP_003356686.1| - 0.046 13.4 0.1 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|282164301|ref|YP_003356686.1| - 0.055 12.3 0.7 0.17 10.7 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|282164301|ref|YP_003356686.1| - 0.095 12.6 0.0 0.9 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|282164301|ref|YP_003356686.1| - 0.15 11.9 0.0 0.37 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.2 gi|282164302|ref|YP_003356687.1| - 0.0037 16.1 11.7 0.0037 16.1 8.1 3.3 3 1 0 3 3 3 2 ABC-2 family transporter protein UPF0370 PF13980.1 gi|282164302|ref|YP_003356687.1| - 0.86 9.4 5.6 6.8 6.5 0.1 3.1 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0370) ABC2_membrane_3 PF12698.2 gi|282164302|ref|YP_003356687.1| - 6.6 5.6 50.0 0.1 11.5 10.1 3.8 2 1 2 4 4 4 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|282164303|ref|YP_003356688.1| - 7.7e-27 94.2 0.0 1.1e-26 93.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282164303|ref|YP_003356688.1| - 7.5e-12 45.8 0.7 1.4e-10 41.6 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|282164303|ref|YP_003356688.1| - 0.0053 16.2 0.0 0.0064 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|282164303|ref|YP_003356688.1| - 0.0069 15.5 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|282164303|ref|YP_003356688.1| - 0.054 13.0 0.3 0.1 12.1 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|282164303|ref|YP_003356688.1| - 0.072 12.1 0.0 0.099 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Pox_A32 PF04665.7 gi|282164303|ref|YP_003356688.1| - 0.097 11.9 0.0 0.28 10.4 0.0 1.6 2 0 0 2 2 2 0 Poxvirus A32 protein ABC2_membrane_3 PF12698.2 gi|282164304|ref|YP_003356689.1| - 9.4e-07 28.1 26.3 1.7e-06 27.3 18.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|282164304|ref|YP_003356689.1| - 1.4 7.6 21.8 8 5.2 15.1 2.2 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2061 PF09834.4 gi|282164304|ref|YP_003356689.1| - 3 8.1 5.8 1.1 9.4 1.5 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2061) ABC2_membrane PF01061.19 gi|282164305|ref|YP_003356690.1| - 3.3e-08 32.9 17.7 3.3e-08 32.9 12.3 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|282164305|ref|YP_003356690.1| - 2.6e-06 26.7 20.5 3.4e-06 26.3 14.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282164305|ref|YP_003356690.1| - 7.4e-05 22.0 21.9 0.00011 21.4 15.2 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2970 PF11174.3 gi|282164305|ref|YP_003356690.1| - 0.023 14.2 0.9 0.023 14.2 0.6 3.6 4 1 1 5 5 5 0 Protein of unknown function (DUF2970) Lactamase_B PF00753.22 gi|282164306|ref|YP_003356691.1| - 1.6e-17 63.8 0.1 7.6e-17 61.5 0.0 2.0 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|282164306|ref|YP_003356691.1| - 9.4e-09 34.9 0.7 2.4e-08 33.6 0.5 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|282164306|ref|YP_003356691.1| - 2.5e-08 33.6 0.2 6e-07 29.2 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain FMN_dh PF01070.13 gi|282164307|ref|YP_003356692.1| - 2e-33 115.7 0.1 2.8e-19 69.1 0.0 2.0 1 1 1 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.10 gi|282164307|ref|YP_003356692.1| - 0.0022 17.1 0.6 0.0051 16.0 0.1 1.7 2 0 0 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.20 gi|282164307|ref|YP_003356692.1| - 0.0048 15.8 2.1 0.043 12.7 0.2 2.8 3 1 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain AA_kinase PF00696.23 gi|282164308|ref|YP_003356693.1| - 4e-41 141.1 0.5 4.6e-41 140.9 0.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.21 gi|282164309|ref|YP_003356694.1| - 7.1e-17 61.2 1.1 1.9e-16 59.8 0.8 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|282164309|ref|YP_003356694.1| - 1.6e-15 57.0 0.1 4.3e-15 55.6 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|282164309|ref|YP_003356694.1| - 0.00054 19.1 0.0 0.0014 17.8 0.0 1.8 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Memo PF01875.12 gi|282164310|ref|YP_003356695.1| - 9.4e-76 254.2 0.0 1.1e-75 254.1 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|282164310|ref|YP_003356695.1| - 0.024 13.6 0.0 0.035 13.0 0.0 1.2 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.15 gi|282164311|ref|YP_003356696.1| - 2.3e-41 141.3 0.0 2.5e-20 72.6 0.3 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Avirulence PF03377.8 gi|282164311|ref|YP_003356696.1| - 0.00086 18.1 0.0 0.0021 16.8 0.0 1.6 1 1 0 1 1 1 1 Xanthomonas avirulence protein, Avr/PthA Enolase_C PF00113.17 gi|282164312|ref|YP_003356697.1| - 5.7e-74 248.7 0.1 8.8e-74 248.1 0.0 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|282164312|ref|YP_003356697.1| - 3.8e-37 127.1 0.4 9.7e-37 125.8 0.3 1.7 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|282164312|ref|YP_003356697.1| - 4.5e-07 30.3 0.1 3.7e-06 27.3 0.0 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|282164312|ref|YP_003356697.1| - 0.00075 19.4 0.0 0.0037 17.2 0.0 2.1 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|282164312|ref|YP_003356697.1| - 0.0037 16.2 0.2 0.0077 15.1 0.0 1.6 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus HAD_2 PF13419.1 gi|282164312|ref|YP_003356697.1| - 0.056 13.6 0.0 3.2 7.9 0.0 2.5 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase RNA_pol_Rpb6 PF01192.17 gi|282164313|ref|YP_003356698.1| - 2.9e-18 65.3 0.2 3.9e-18 64.9 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|282164314|ref|YP_003356699.1| - 4e-27 94.0 0.4 4.6e-27 93.8 0.3 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.14 gi|282164315|ref|YP_003356700.1| - 1.7e-34 118.6 0.2 1.9e-34 118.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|282164316|ref|YP_003356701.1| - 2.8e-23 82.3 0.0 3.5e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|282164317|ref|YP_003356702.1| - 3.9e-14 53.1 0.0 5.1e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 UPF0179 PF03684.8 gi|282164318|ref|YP_003356703.1| - 4.6e-51 172.1 1.5 5.1e-51 172.0 1.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|282164318|ref|YP_003356703.1| - 0.0042 17.0 0.9 0.36 10.8 0.0 2.2 2 0 0 2 2 2 2 Transposase DDE domain AIRS_C PF02769.17 gi|282164319|ref|YP_003356704.1| - 3.7e-18 65.9 1.0 6.6e-18 65.1 0.7 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|282164319|ref|YP_003356704.1| - 1.9e-12 47.2 0.2 5.8e-12 45.6 0.1 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Response_reg PF00072.19 gi|282164320|ref|YP_003356705.1| - 6.5e-18 64.7 0.2 9.3e-18 64.2 0.2 1.3 1 1 0 1 1 1 1 Response regulator receiver domain RibD_C PF01872.12 gi|282164321|ref|YP_003356706.1| - 3.6e-42 144.2 0.1 4e-42 144.1 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain PALP PF00291.20 gi|282164321|ref|YP_003356706.1| - 0.014 14.6 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme CarboxypepD_reg PF13620.1 gi|282164322|ref|YP_003356707.1| - 2.2e-05 24.4 5.6 2.2e-05 24.4 3.9 2.2 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282164322|ref|YP_003356707.1| - 0.082 12.9 3.0 0.074 13.1 1.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4480) DIM PF08194.7 gi|282164322|ref|YP_003356707.1| - 0.15 12.0 2.6 0.65 9.9 1.8 2.2 1 1 0 1 1 1 0 DIM protein DUF605 PF04652.11 gi|282164322|ref|YP_003356707.1| - 2.3 7.5 22.0 3.1 7.1 15.2 1.2 1 0 0 1 1 1 0 Vta1 like HTH_45 PF14947.1 gi|282164323|ref|YP_003356708.1| - 1.3e-08 34.5 0.1 2e-08 33.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|282164323|ref|YP_003356708.1| - 0.0004 20.0 0.0 0.0011 18.5 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|282164323|ref|YP_003356708.1| - 0.0099 16.1 0.0 0.017 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|282164323|ref|YP_003356708.1| - 0.065 12.6 0.0 0.73 9.2 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding tRNA-synt_2c PF01411.14 gi|282164324|ref|YP_003356709.1| - 2.5e-10 39.3 0.0 3.3e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|282164324|ref|YP_003356709.1| - 2e-07 30.7 0.1 4.3e-07 29.7 0.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Peptidase_M29 PF02073.10 gi|282164325|ref|YP_003356710.1| - 4e-20 71.9 0.0 4.7e-14 51.9 0.0 2.2 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) MoCF_biosynth PF00994.19 gi|282164326|ref|YP_003356711.1| - 1.7e-36 124.7 0.0 2.4e-36 124.3 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain KIP1 PF07765.7 gi|282164326|ref|YP_003356711.1| - 0.064 13.1 0.1 0.18 11.6 0.0 1.8 2 0 0 2 2 2 0 KIP1-like protein Amino_oxidase PF01593.19 gi|282164326|ref|YP_003356711.1| - 0.12 11.3 0.4 0.26 10.3 0.2 1.3 1 1 0 1 1 1 0 Flavin containing amine oxidoreductase DUF4352 PF11611.3 gi|282164327|ref|YP_003356712.1| - 0.14 12.3 0.3 0.32 11.1 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4352) PLRV_ORF5 PF01690.12 gi|282164327|ref|YP_003356712.1| - 6.5 5.7 7.6 10 5.1 5.3 1.2 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Pilus_CpaD PF09476.5 gi|282164328|ref|YP_003356713.1| - 0.14 11.6 0.1 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) ATP-sulfurylase PF01747.12 gi|282164329|ref|YP_003356714.1| - 6.5e-77 257.6 0.1 1e-76 257.0 0.1 1.3 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|282164329|ref|YP_003356714.1| - 4.5e-36 123.6 0.0 7e-36 123.0 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain Trypsin_2 PF13365.1 gi|282164330|ref|YP_003356715.1| - 1.9e-23 82.7 0.3 2.8e-23 82.1 0.2 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|282164330|ref|YP_003356715.1| - 1.5e-16 60.0 0.1 3.2e-16 58.9 0.0 1.5 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|282164330|ref|YP_003356715.1| - 5.9e-15 55.4 0.0 1.7e-14 53.9 0.0 1.6 1 1 0 1 1 1 1 Trypsin PDZ PF00595.19 gi|282164330|ref|YP_003356715.1| - 3.4e-10 39.9 0.1 1.3e-09 38.1 0.0 2.1 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|282164330|ref|YP_003356715.1| - 2.4e-08 32.8 0.1 0.0018 16.8 0.1 2.1 2 0 0 2 2 2 2 Peptidase S46 Peptidase_S7 PF00949.16 gi|282164330|ref|YP_003356715.1| - 0.012 14.9 0.2 0.021 14.2 0.2 1.4 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease GRASP55_65 PF04495.9 gi|282164330|ref|YP_003356715.1| - 0.079 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain CxxCxxCC PF03692.10 gi|282164331|ref|YP_003356716.1| - 1e-07 32.3 0.3 1.6e-07 31.6 0.2 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Metallophos PF00149.23 gi|282164332|ref|YP_003356717.1| - 2.7e-06 26.9 0.3 3.9e-06 26.4 0.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|282164332|ref|YP_003356717.1| - 9.9e-06 25.4 0.0 3e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain YusW PF14039.1 gi|282164333|ref|YP_003356718.1| - 0.089 13.0 0.1 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 YusW-like protein SNO PF01174.14 gi|282164334|ref|YP_003356719.1| - 1.1e-50 171.9 0.0 1.2e-50 171.7 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|282164334|ref|YP_003356719.1| - 4.5e-11 42.5 0.0 7.4e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|282164334|ref|YP_003356719.1| - 4.5e-06 26.2 0.0 1.7e-05 24.3 0.0 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|282164334|ref|YP_003356719.1| - 5.9e-06 26.0 0.0 8.4e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|282164334|ref|YP_003356719.1| - 0.00044 19.7 0.0 0.0011 18.4 0.0 1.5 1 1 1 2 2 2 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|282164334|ref|YP_003356719.1| - 0.013 14.7 0.1 0.024 13.9 0.1 1.6 1 1 0 1 1 1 0 Putative amidotransferase Peptidase_C26 PF07722.8 gi|282164334|ref|YP_003356719.1| - 0.043 13.2 0.0 0.26 10.6 0.0 2.3 1 1 0 1 1 1 0 Peptidase C26 BPL_N PF09825.4 gi|282164334|ref|YP_003356719.1| - 0.1 11.3 0.0 0.38 9.4 0.0 1.8 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal HATPase_c PF02518.21 gi|282164335|ref|YP_003356720.1| - 1.6e-19 69.6 0.0 3e-19 68.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|282164335|ref|YP_003356720.1| - 4e-10 39.9 0.0 4.9e-09 36.5 0.0 2.6 2 1 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|282164335|ref|YP_003356720.1| - 2.8e-07 30.5 0.0 9.1e-07 28.8 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS PF00989.19 gi|282164335|ref|YP_003356720.1| - 4.1e-06 26.5 0.0 8e-05 22.4 0.0 2.5 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|282164335|ref|YP_003356720.1| - 0.00093 18.9 0.0 0.0021 17.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|282164335|ref|YP_003356720.1| - 0.0043 16.7 0.0 0.0075 15.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|282164335|ref|YP_003356720.1| - 0.029 14.3 0.0 1.5 8.8 0.0 2.5 2 0 0 2 2 2 0 PAS fold PAS_10 PF13596.1 gi|282164335|ref|YP_003356720.1| - 0.035 14.3 0.0 0.34 11.2 0.0 2.3 2 0 0 2 2 2 0 PAS domain Prenyltrans_2 PF13249.1 gi|282164336|ref|YP_003356721.1| - 1e-25 90.3 0.2 3.4e-16 59.6 0.0 2.9 3 1 1 4 4 4 3 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|282164336|ref|YP_003356721.1| - 2.6e-22 78.8 0.0 7.9e-07 29.0 0.0 4.0 2 1 0 3 3 3 3 Prenyltransferase-like Prenyltrans PF00432.16 gi|282164336|ref|YP_003356721.1| - 2.6e-17 62.0 0.0 0.00046 19.7 0.0 4.3 4 0 0 4 4 4 4 Prenyltransferase and squalene oxidase repeat A2M_comp PF07678.9 gi|282164336|ref|YP_003356721.1| - 1.8e-05 24.0 0.0 3.9 6.6 0.0 3.9 2 1 2 4 4 4 3 A-macroglobulin complement component Mago-bind PF09282.5 gi|282164336|ref|YP_003356721.1| - 0.1 12.2 0.0 34 4.1 0.0 3.3 4 0 0 4 4 4 0 Mago binding Abhydrolase_5 PF12695.2 gi|282164337|ref|YP_003356722.1| - 4.5e-11 42.6 0.1 6.5e-11 42.1 0.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|282164337|ref|YP_003356722.1| - 9.5e-11 40.7 0.0 1.7e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.2 gi|282164337|ref|YP_003356722.1| - 8.1e-06 25.8 0.0 1.1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|282164337|ref|YP_003356722.1| - 6.6e-05 22.2 1.0 0.0002 20.6 0.7 1.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.13 gi|282164337|ref|YP_003356722.1| - 0.00039 19.7 0.0 0.00062 19.1 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.6 gi|282164337|ref|YP_003356722.1| - 0.0007 19.3 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_1 PF00561.15 gi|282164337|ref|YP_003356722.1| - 0.0024 17.4 0.1 0.0033 17.0 0.1 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.8 gi|282164337|ref|YP_003356722.1| - 0.0026 17.3 0.0 0.0062 16.1 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|282164337|ref|YP_003356722.1| - 0.0039 16.6 0.7 0.014 14.7 0.5 1.7 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) DUF3139 PF11337.3 gi|282164337|ref|YP_003356722.1| - 0.01 16.1 0.2 0.026 14.7 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) TMEM190 PF15431.1 gi|282164337|ref|YP_003356722.1| - 0.031 14.2 0.0 0.046 13.6 0.0 1.3 1 0 0 1 1 1 0 Transmembrane protein 190 Hydrolase_4 PF12146.3 gi|282164337|ref|YP_003356722.1| - 0.056 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Putative lysophospholipase Transgly_assoc PF04226.8 gi|282164337|ref|YP_003356722.1| - 0.81 9.8 6.7 0.75 9.9 1.0 2.4 2 0 0 2 2 2 0 Transglycosylase associated protein DHQS PF01959.11 gi|282164338|ref|YP_003356723.1| - 9.2e-145 481.7 0.9 1e-144 481.6 0.6 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) OapA PF04225.7 gi|282164338|ref|YP_003356723.1| - 0.0039 17.0 0.1 0.1 12.4 0.0 2.8 1 1 0 2 2 2 1 Opacity-associated protein A LysM-like domain DeoC PF01791.4 gi|282164339|ref|YP_003356724.1| - 3.4e-57 193.4 0.2 3.9e-57 193.2 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|282164339|ref|YP_003356724.1| - 0.0046 16.3 0.5 0.01 15.2 0.1 1.7 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family UPF0150 PF03681.10 gi|282164339|ref|YP_003356724.1| - 0.096 12.3 0.4 3.2 7.4 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) DUF3763 PF12592.3 gi|282164340|ref|YP_003356725.1| - 0.0074 15.8 0.3 8.4 6.1 0.0 3.2 3 0 0 3 3 3 2 Protein of unknown function (DUF3763) YqfD PF06898.6 gi|282164340|ref|YP_003356725.1| - 0.031 12.9 0.0 0.031 12.9 0.0 2.0 2 0 0 2 2 2 0 Putative stage IV sporulation protein YqfD Halo_GVPC PF05465.8 gi|282164340|ref|YP_003356725.1| - 4.9 7.1 5.7 4.8 7.2 0.3 2.6 2 0 0 2 2 2 0 Halobacterial gas vesicle protein C (GVPC) repeat PadR PF03551.9 gi|282164341|ref|YP_003356726.1| - 7.4e-19 67.2 0.8 1.6e-18 66.1 0.1 1.9 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|282164341|ref|YP_003356726.1| - 4.9e-05 23.0 0.5 0.26 11.1 0.0 2.4 1 1 1 2 2 2 2 Winged helix-turn-helix HTH_34 PF13601.1 gi|282164341|ref|YP_003356726.1| - 0.00026 20.9 0.2 0.0019 18.1 0.0 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|282164341|ref|YP_003356726.1| - 0.0013 18.3 0.6 0.32 10.5 0.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4364) FUR PF01475.14 gi|282164341|ref|YP_003356726.1| - 0.015 15.1 0.0 0.042 13.7 0.0 1.7 1 1 0 1 1 1 0 Ferric uptake regulator family PepSY PF03413.14 gi|282164341|ref|YP_003356726.1| - 0.044 14.4 0.1 0.093 13.3 0.0 1.6 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain DUF758 PF05527.6 gi|282164341|ref|YP_003356726.1| - 0.046 13.3 0.0 2.1 7.9 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF758) DUF1678 PF07913.6 gi|282164341|ref|YP_003356726.1| - 0.093 12.2 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1678) UbiA PF01040.13 gi|282164342|ref|YP_003356727.1| - 3.3e-20 72.3 25.2 4.4e-20 71.9 17.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family PadR PF03551.9 gi|282164343|ref|YP_003356728.1| - 4.3e-20 71.2 0.1 9.8e-20 70.1 0.2 1.5 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|282164343|ref|YP_003356728.1| - 0.0011 18.9 0.0 0.0061 16.5 0.0 2.2 2 1 1 3 3 3 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|282164343|ref|YP_003356728.1| - 0.0061 16.3 0.0 0.97 9.2 0.0 2.4 1 1 1 2 2 2 2 Winged helix-turn-helix HTH_24 PF13412.1 gi|282164343|ref|YP_003356728.1| - 0.061 12.7 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UBN_AB PF14075.1 gi|282164343|ref|YP_003356728.1| - 0.089 12.4 0.5 12 5.4 0.0 2.3 2 0 0 2 2 2 0 Ubinuclein conserved middle domain Penicillinase_R PF03965.11 gi|282164343|ref|YP_003356728.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.5 1 1 0 1 1 1 0 Penicillinase repressor TrmB PF01978.14 gi|282164343|ref|YP_003356728.1| - 0.12 12.0 0.0 0.3 10.8 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PDT PF00800.13 gi|282164344|ref|YP_003356729.1| - 1.5e-55 187.5 0.0 1.8e-55 187.3 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|282164344|ref|YP_003356729.1| - 1.9e-09 36.8 0.0 3.3e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 ACT domain NUDIX_4 PF14815.1 gi|282164344|ref|YP_003356729.1| - 0.14 11.5 0.0 0.4 10.1 0.0 1.7 2 0 0 2 2 2 0 NUDIX domain ArsB PF02040.10 gi|282164345|ref|YP_003356730.1| - 1.2e-53 182.6 40.0 1.6e-53 182.1 27.7 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein CitMHS PF03600.11 gi|282164345|ref|YP_003356730.1| - 6e-32 110.5 42.5 9.3e-32 109.9 29.4 1.3 1 0 0 1 1 1 1 Citrate transporter PQ-loop PF04193.9 gi|282164346|ref|YP_003356731.1| - 1.9e-09 36.9 4.3 2.3e-09 36.6 2.7 1.3 1 1 0 1 1 1 1 PQ loop repeat MtN3_slv PF03083.11 gi|282164346|ref|YP_003356731.1| - 2e-07 30.7 4.1 2.3e-07 30.5 2.8 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PAS_4 PF08448.5 gi|282164347|ref|YP_003356732.1| - 3.1e-31 107.6 0.1 2.3e-16 59.7 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|282164347|ref|YP_003356732.1| - 2.4e-27 95.3 0.0 2.1e-14 53.7 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|282164347|ref|YP_003356732.1| - 7.1e-22 77.3 0.0 8.1e-12 44.9 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|282164347|ref|YP_003356732.1| - 8.3e-16 57.2 0.0 1.9e-07 30.6 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|282164347|ref|YP_003356732.1| - 1e-09 38.3 1.1 3.4e-07 30.2 0.1 3.0 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.2 gi|282164347|ref|YP_003356732.1| - 0.00096 19.1 0.0 0.074 13.0 0.0 3.1 3 0 0 3 3 3 1 PAS fold GAF_2 PF13185.1 gi|282164347|ref|YP_003356732.1| - 0.0035 17.8 0.2 0.15 12.5 0.0 3.3 2 1 1 3 3 3 1 GAF domain GyrI-like PF06445.10 gi|282164347|ref|YP_003356732.1| - 0.0068 16.4 0.1 0.022 14.7 0.1 1.8 1 0 0 1 1 1 1 GyrI-like small molecule binding domain HrcA PF01628.16 gi|282164347|ref|YP_003356732.1| - 0.14 11.7 1.1 15 5.0 0.0 3.1 3 0 0 3 3 3 0 HrcA protein C terminal domain Glu_synthase PF01645.12 gi|282164348|ref|YP_003356733.1| - 2.1e-07 30.1 0.1 0.0001 21.3 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase CarboxypepD_reg PF13620.1 gi|282164349|ref|YP_003356734.1| - 0.0021 18.0 0.1 0.0032 17.5 0.0 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain SLIDE PF09111.5 gi|282164350|ref|YP_003356735.1| - 0.018 14.7 0.5 0.58 9.9 0.0 2.4 2 0 0 2 2 2 0 SLIDE tRNA-synt_1d PF00750.14 gi|282164350|ref|YP_003356735.1| - 0.069 11.9 0.5 0.082 11.7 0.3 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (R) CheR_N PF03705.10 gi|282164350|ref|YP_003356735.1| - 0.11 11.9 0.1 0.3 10.4 0.1 1.8 1 0 0 1 1 1 0 CheR methyltransferase, all-alpha domain HEAT_2 PF13646.1 gi|282164351|ref|YP_003356736.1| - 9.3e-26 89.9 4.8 1.5e-14 54.0 0.2 2.0 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.17 gi|282164351|ref|YP_003356736.1| - 3.8e-12 45.1 0.2 0.0057 16.6 0.0 3.9 4 0 0 4 4 4 3 HEAT repeat HEAT_PBS PF03130.11 gi|282164351|ref|YP_003356736.1| - 2.7e-11 42.8 3.9 0.00056 20.1 0.0 3.7 4 0 0 4 4 4 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|282164351|ref|YP_003356736.1| - 2.1e-10 40.7 2.9 0.0048 17.3 0.0 3.6 3 1 1 4 4 4 3 HEAT-like repeat Adaptin_N PF01602.15 gi|282164351|ref|YP_003356736.1| - 9.5e-05 20.9 0.3 0.00015 20.2 0.2 1.3 1 1 0 1 1 1 1 Adaptin N terminal region Aconitase_B_N PF11791.3 gi|282164351|ref|YP_003356736.1| - 0.013 15.3 0.3 2.1 8.1 0.1 2.1 1 1 1 2 2 2 0 Aconitate B N-terminal domain Arm PF00514.18 gi|282164351|ref|YP_003356736.1| - 0.052 13.3 0.0 0.44 10.4 0.0 2.4 2 1 0 2 2 2 0 Armadillo/beta-catenin-like repeat Vac14_Fab1_bd PF12755.2 gi|282164351|ref|YP_003356736.1| - 0.12 12.7 0.2 5.1 7.5 0.0 2.7 2 1 1 3 3 3 0 Vacuolar 14 Fab1-binding region Ribosomal_S6e PF01092.14 gi|282164352|ref|YP_003356737.1| - 1.9e-32 111.5 1.1 2.2e-32 111.3 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e PAP2_3 PF14378.1 gi|282164361|ref|YP_003356746.1| - 0.089 12.3 0.2 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 PAP2 superfamily DUF3311 PF11755.3 gi|282164362|ref|YP_003356747.1| - 0.065 12.7 3.0 0.11 11.9 2.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3311) IncA PF04156.9 gi|282164362|ref|YP_003356747.1| - 8.6 5.9 6.4 0.56 9.7 1.2 1.4 2 0 0 2 2 2 0 IncA protein DIM PF08194.7 gi|282164363|ref|YP_003356748.1| - 0.11 12.4 3.6 0.18 11.7 2.5 1.3 1 0 0 1 1 1 0 DIM protein MCR_beta_N PF02783.10 gi|282164369|ref|YP_003356754.1| - 0.0056 16.1 0.3 0.0083 15.5 0.2 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain FAM176 PF14851.1 gi|282164369|ref|YP_003356754.1| - 0.028 14.0 0.6 2.8 7.5 0.0 2.7 3 0 0 3 3 3 0 FAM176 family NfeD PF01957.13 gi|282164369|ref|YP_003356754.1| - 5.5 7.1 17.7 1.2 9.2 2.4 2.9 2 1 0 2 2 2 0 NfeD-like C-terminal, partner-binding PadR PF03551.9 gi|282164370|ref|YP_003356755.1| - 7.5e-21 73.6 0.3 1e-20 73.2 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HxlR PF01638.12 gi|282164370|ref|YP_003356755.1| - 9.4e-05 21.9 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|282164370|ref|YP_003356755.1| - 0.00017 21.5 0.0 0.00024 21.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.7 gi|282164370|ref|YP_003356755.1| - 0.0033 15.6 0.0 0.0038 15.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) PMT_2 PF13231.1 gi|282164371|ref|YP_003356756.1| - 1.6e-13 50.8 9.0 1.6e-13 50.8 6.2 4.0 4 1 1 5 5 5 2 Dolichyl-phosphate-mannose-protein mannosyltransferase FKBP_C PF00254.23 gi|282164373|ref|YP_003356758.1| - 5.3e-16 58.4 1.1 1.6e-15 56.8 0.4 2.2 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase Prok-E2_E PF14462.1 gi|282164373|ref|YP_003356758.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic E2 family E UPF0150 PF03681.10 gi|282164374|ref|YP_003356759.1| - 7.3e-05 22.3 0.0 9.8e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) MinE PF03776.9 gi|282164374|ref|YP_003356759.1| - 0.1 12.1 0.1 0.17 11.3 0.1 1.4 1 0 0 1 1 1 0 Septum formation topological specificity factor MinE FKBP_C PF00254.23 gi|282164375|ref|YP_003356760.1| - 2.1e-17 62.9 4.0 5.9e-14 51.8 2.7 2.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase PRCC PF10253.4 gi|282164377|ref|YP_003356762.1| - 0.62 10.7 3.3 0.79 10.3 2.3 1.2 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting 2TM PF13239.1 gi|282164378|ref|YP_003356763.1| - 2.3e-05 24.3 2.5 0.00054 19.9 0.0 2.2 2 0 0 2 2 2 1 2TM domain DUF3537 PF12056.3 gi|282164378|ref|YP_003356763.1| - 0.0035 16.0 8.8 0.0044 15.7 6.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3537) LMF1 PF06762.9 gi|282164378|ref|YP_003356763.1| - 0.18 10.5 4.6 0.22 10.2 3.2 1.1 1 0 0 1 1 1 0 Lipase maturation factor DUF2919 PF11143.3 gi|282164378|ref|YP_003356763.1| - 0.53 10.1 6.6 0.24 11.1 0.1 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2919) DUF4307 PF14155.1 gi|282164378|ref|YP_003356763.1| - 0.56 10.0 3.5 1.7 8.4 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4307) DUF2208 PF09973.4 gi|282164378|ref|YP_003356763.1| - 2.3 7.3 11.6 3.9 6.6 8.0 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2208) CYTH PF01928.16 gi|282164380|ref|YP_003356765.1| - 9.9e-35 119.8 1.7 1.1e-34 119.7 1.2 1.0 1 0 0 1 1 1 1 CYTH domain Nitroreductase PF00881.19 gi|282164381|ref|YP_003356766.1| - 2.3e-37 128.3 0.1 3.1e-37 127.9 0.1 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|282164381|ref|YP_003356766.1| - 0.037 13.2 0.2 1.1 8.4 0.1 2.2 2 0 0 2 2 2 0 Putative TM nitroreductase ACT PF01842.20 gi|282164382|ref|YP_003356767.1| - 0.00032 20.0 0.0 0.0009 18.6 0.0 1.7 1 0 0 1 1 1 1 ACT domain Saccharop_dh_N PF04455.7 gi|282164382|ref|YP_003356767.1| - 0.38 10.9 2.5 1.3 9.2 1.0 2.2 1 1 1 2 2 2 0 LOR/SDH bifunctional enzyme conserved region Homoserine_dh PF00742.14 gi|282164383|ref|YP_003356768.1| - 2.8e-58 196.5 0.0 4.1e-58 195.9 0.0 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|282164383|ref|YP_003356768.1| - 1.1e-15 58.1 0.1 1.7e-15 57.4 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|282164383|ref|YP_003356768.1| - 1.3e-08 34.7 0.4 3.2e-08 33.4 0.3 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Gp_dh_N PF00044.19 gi|282164383|ref|YP_003356768.1| - 4.9e-06 26.5 0.1 8e-06 25.8 0.1 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|282164383|ref|YP_003356768.1| - 3.2e-05 24.4 0.1 6.6e-05 23.4 0.1 1.5 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.11 gi|282164383|ref|YP_003356768.1| - 3.8e-05 24.2 0.2 0.011 16.2 0.1 2.9 1 1 1 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Saccharop_dh PF03435.13 gi|282164383|ref|YP_003356768.1| - 0.0003 19.8 0.2 0.00056 19.0 0.2 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|282164383|ref|YP_003356768.1| - 0.0019 17.6 1.0 0.0049 16.2 0.7 1.6 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|282164383|ref|YP_003356768.1| - 0.011 16.1 0.2 0.051 14.0 0.1 2.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|282164383|ref|YP_003356768.1| - 0.013 15.4 0.1 0.033 14.1 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_2 PF03446.10 gi|282164383|ref|YP_003356768.1| - 0.028 14.2 0.1 0.048 13.4 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF1611 PF07755.6 gi|282164383|ref|YP_003356768.1| - 0.037 12.6 0.0 0.059 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1611) DUF2520 PF10728.4 gi|282164384|ref|YP_003356769.1| - 0.034 13.6 0.0 0.034 13.6 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF2520) zf-ribbon_3 PF13248.1 gi|282164385|ref|YP_003356770.1| - 0.0052 15.9 0.0 2 7.7 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|282164385|ref|YP_003356770.1| - 0.078 12.6 1.0 1.7 8.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|282164385|ref|YP_003356770.1| - 0.083 12.7 0.5 0.61 9.9 0.4 1.9 1 1 1 2 2 2 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|282164385|ref|YP_003356770.1| - 0.085 12.4 1.1 2.2 7.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|282164385|ref|YP_003356770.1| - 0.1 11.7 0.2 8 5.7 0.0 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger DUF678 PF05077.7 gi|282164385|ref|YP_003356770.1| - 0.11 12.4 0.4 0.19 11.7 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Cys_rich_KTR PF14205.1 gi|282164385|ref|YP_003356770.1| - 0.61 9.5 2.9 1.7 8.1 0.0 2.7 3 0 0 3 3 3 0 Cysteine-rich KTR Radical_SAM PF04055.16 gi|282164386|ref|YP_003356771.1| - 6.2e-15 55.7 0.1 1.5e-14 54.5 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily zf-TFIIIC PF12660.2 gi|282164386|ref|YP_003356771.1| - 0.027 14.3 0.4 0.046 13.6 0.3 1.3 1 0 0 1 1 1 0 Putative zinc-finger of transcription factor IIIC complex E1_dh PF00676.15 gi|282164387|ref|YP_003356772.1| - 4e-89 298.3 0.0 4.6e-89 298.1 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|282164387|ref|YP_003356772.1| - 1.3e-05 24.2 0.0 1.9e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|282164387|ref|YP_003356772.1| - 0.0023 16.8 0.0 0.003 16.4 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.16 gi|282164387|ref|YP_003356772.1| - 0.025 14.1 0.1 0.19 11.2 0.1 2.1 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transket_pyr PF02779.19 gi|282164388|ref|YP_003356773.1| - 6.7e-45 152.7 0.3 9.8e-45 152.2 0.2 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|282164388|ref|YP_003356773.1| - 5e-38 129.8 0.0 8.2e-38 129.1 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain 2-oxoacid_dh PF00198.18 gi|282164389|ref|YP_003356774.1| - 6.3e-84 280.8 0.0 8.1e-84 280.4 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|282164389|ref|YP_003356774.1| - 4.8e-24 83.7 3.1 9.6e-24 82.8 2.2 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|282164389|ref|YP_003356774.1| - 3.1e-13 49.1 0.1 6.5e-13 48.0 0.1 1.5 1 0 0 1 1 1 1 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|282164389|ref|YP_003356774.1| - 4.4e-09 35.8 4.6 0.00023 20.7 0.1 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_2 PF12700.2 gi|282164389|ref|YP_003356774.1| - 1.8e-07 30.6 0.6 0.011 14.8 0.0 2.6 2 1 1 3 3 3 2 HlyD family secretion protein GCV_H PF01597.14 gi|282164389|ref|YP_003356774.1| - 9.1e-05 22.1 0.9 0.00021 20.9 0.6 1.7 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.1 gi|282164389|ref|YP_003356774.1| - 0.0015 18.2 0.6 0.0041 16.8 0.4 1.8 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.17 gi|282164389|ref|YP_003356774.1| - 0.05 13.6 0.3 0.77 9.8 0.0 2.3 2 0 0 2 2 2 0 Peptidase family M23 HlyD_3 PF13437.1 gi|282164389|ref|YP_003356774.1| - 0.062 13.6 2.2 3.7 7.9 0.3 2.6 1 1 1 2 2 2 0 HlyD family secretion protein Ribosomal_60s PF00428.14 gi|282164389|ref|YP_003356774.1| - 5.3 7.5 17.3 2.9 8.3 0.9 2.8 2 0 0 2 2 2 0 60s Acidic ribosomal protein Pyr_redox_dim PF02852.17 gi|282164390|ref|YP_003356775.1| - 1.4e-32 111.9 0.2 2.9e-32 110.9 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|282164390|ref|YP_003356775.1| - 1.5e-31 109.8 0.0 2.8e-31 108.9 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|282164390|ref|YP_003356775.1| - 6.9e-15 55.2 0.4 3.5e-09 36.9 0.0 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|282164390|ref|YP_003356775.1| - 2.8e-10 39.8 0.5 2.3e-09 36.8 0.4 2.3 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|282164390|ref|YP_003356775.1| - 8.5e-09 34.7 4.3 3.9e-08 32.5 0.4 2.7 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|282164390|ref|YP_003356775.1| - 1.8e-08 34.2 1.9 0.00036 20.5 0.2 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|282164390|ref|YP_003356775.1| - 1.8e-08 34.6 0.0 7.3e-07 29.4 0.0 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|282164390|ref|YP_003356775.1| - 2.1e-07 30.1 1.2 2.1e-07 30.1 0.8 2.0 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|282164390|ref|YP_003356775.1| - 5.4e-07 28.4 4.9 9.4e-06 24.3 0.1 3.2 2 1 1 3 3 3 1 HI0933-like protein DAO PF01266.19 gi|282164390|ref|YP_003356775.1| - 2.1e-06 26.8 4.2 4.2e-06 25.9 0.3 2.8 2 1 1 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|282164390|ref|YP_003356775.1| - 1.3e-05 24.4 1.5 0.00029 19.9 0.1 2.9 3 0 0 3 3 3 1 Thi4 family Trp_halogenase PF04820.9 gi|282164390|ref|YP_003356775.1| - 4.1e-05 22.4 1.7 0.00086 18.0 0.0 2.8 3 0 0 3 3 3 1 Tryptophan halogenase 3HCDH_N PF02737.13 gi|282164390|ref|YP_003356775.1| - 9.3e-05 22.1 2.2 0.063 12.9 0.1 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|282164390|ref|YP_003356775.1| - 0.0001 21.5 1.5 0.0003 19.9 0.4 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.1 gi|282164390|ref|YP_003356775.1| - 0.0001 22.4 0.7 0.22 11.8 0.1 3.0 3 0 0 3 3 3 2 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|282164390|ref|YP_003356775.1| - 0.0024 16.8 4.1 0.0042 16.0 0.2 2.7 2 1 1 3 3 3 1 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.9 gi|282164390|ref|YP_003356775.1| - 0.032 13.5 0.5 4.9 6.4 0.2 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|282164390|ref|YP_003356775.1| - 0.033 14.1 0.4 4.5 7.3 0.0 3.3 4 0 0 4 4 3 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|282164390|ref|YP_003356775.1| - 0.034 13.8 0.3 2.7 7.6 0.0 2.7 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RraB PF06877.6 gi|282164390|ref|YP_003356775.1| - 0.086 13.4 0.0 0.31 11.7 0.0 1.8 2 0 0 2 2 2 0 Regulator of ribonuclease activity B DUF3670 PF12419.3 gi|282164390|ref|YP_003356775.1| - 0.11 11.9 0.0 0.29 10.5 0.0 1.6 1 0 0 1 1 1 0 SNF2 Helicase protein NAD_binding_9 PF13454.1 gi|282164390|ref|YP_003356775.1| - 0.15 11.8 1.3 0.57 9.9 0.0 2.3 2 1 0 2 2 2 0 FAD-NAD(P)-binding BPL_LplA_LipB PF03099.14 gi|282164391|ref|YP_003356776.1| - 1.2e-23 83.4 0.0 2e-23 82.7 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Rhodanese PF00581.15 gi|282164393|ref|YP_003356778.1| - 9.6e-18 64.5 0.0 1.2e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain AMP-binding PF00501.23 gi|282164394|ref|YP_003356779.1| - 6.4e-104 347.6 0.0 7.4e-104 347.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|282164394|ref|YP_003356779.1| - 3.8e-14 53.4 0.0 7.3e-14 52.4 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PhnI PF05861.7 gi|282164394|ref|YP_003356779.1| - 0.045 12.2 0.0 4.9 5.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial phosphonate metabolism protein (PhnI) AMP-binding_C_2 PF14535.1 gi|282164395|ref|YP_003356780.1| - 7e-30 102.9 0.0 1.5e-29 101.9 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|282164395|ref|YP_003356780.1| - 3.5e-11 42.1 0.1 5.4e-11 41.5 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme DDE_Tnp_1 PF01609.16 gi|282164396|ref|YP_003356781.1| - 2.4e-09 37.0 1.2 3.2e-09 36.6 0.8 1.2 1 0 0 1 1 1 1 Transposase DDE domain Vfa1 PF08432.5 gi|282164396|ref|YP_003356781.1| - 0.13 12.3 7.4 2.2 8.2 3.0 2.2 2 0 0 2 2 2 0 AAA-ATPase Vps4-associated protein 1 DUF2284 PF10050.4 gi|282164397|ref|YP_003356782.1| - 7.1e-48 162.3 0.1 8.2e-48 162.1 0.1 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) PsbT PF01405.12 gi|282164398|ref|YP_003356783.1| - 1.5 8.4 9.9 0.47 10.0 3.9 2.0 2 0 0 2 2 2 0 Photosystem II reaction centre T protein Glutaredoxin PF00462.19 gi|282164400|ref|YP_003356785.1| - 6.4e-14 51.6 0.1 1e-13 51.0 0.1 1.3 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.1 gi|282164400|ref|YP_003356785.1| - 1.9e-07 30.7 0.7 3e-07 30.1 0.5 1.3 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_4 PF13462.1 gi|282164400|ref|YP_003356785.1| - 0.00021 21.3 0.9 0.045 13.7 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin ArsC PF03960.10 gi|282164400|ref|YP_003356785.1| - 0.00031 20.7 0.1 0.035 14.1 0.0 2.0 1 1 0 2 2 2 1 ArsC family GST_N_3 PF13417.1 gi|282164400|ref|YP_003356785.1| - 0.00067 19.8 0.0 0.00074 19.6 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.1 gi|282164400|ref|YP_003356785.1| - 0.0012 19.0 0.2 0.52 10.5 0.1 2.1 1 1 1 2 2 2 2 Thioredoxin-like domain DUF836 PF05768.9 gi|282164400|ref|YP_003356785.1| - 0.0018 18.5 0.0 0.002 18.3 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) PAZ_siRNAbind PF12212.3 gi|282164400|ref|YP_003356785.1| - 0.036 13.6 0.9 0.077 12.6 0.0 1.9 2 0 0 2 2 2 0 Piwi/Argonaute/Zwille siRNA-binding domain DUF4438 PF14505.1 gi|282164400|ref|YP_003356785.1| - 0.063 12.0 0.0 0.068 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) MFS_1 PF07690.11 gi|282164401|ref|YP_003356786.1| - 3.7e-55 187.0 54.9 1.2e-38 132.7 24.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|282164401|ref|YP_003356786.1| - 4.1e-18 65.0 33.8 3.3e-13 48.8 4.7 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|282164401|ref|YP_003356786.1| - 1.4e-09 37.0 39.4 2.2e-09 36.4 12.3 2.6 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|282164401|ref|YP_003356786.1| - 8.5e-05 22.2 2.2 0.00051 19.7 1.6 2.5 1 0 0 1 1 1 1 MFS_1 like family MFS_3 PF05977.8 gi|282164401|ref|YP_003356786.1| - 9e-05 20.7 26.5 0.0026 15.9 3.7 3.2 3 0 0 3 3 3 3 Transmembrane secretion effector PUCC PF03209.10 gi|282164401|ref|YP_003356786.1| - 0.0005 18.9 7.4 0.0005 18.9 5.1 3.0 2 1 1 3 3 3 1 PUCC protein NIR_SIR PF01077.17 gi|282164402|ref|YP_003356787.1| - 4.6e-36 123.5 0.1 5.9e-36 123.2 0.0 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|282164402|ref|YP_003356787.1| - 3.7e-15 55.3 0.0 6.4e-15 54.5 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Tautomerase PF01361.16 gi|282164402|ref|YP_003356787.1| - 0.091 12.3 0.0 2.1 8.0 0.0 2.2 2 0 0 2 2 2 0 Tautomerase enzyme FMN_red PF03358.10 gi|282164403|ref|YP_003356788.1| - 2.3e-21 75.8 0.0 2.9e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|282164403|ref|YP_003356788.1| - 5.4e-11 42.3 0.0 7.1e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold HypA PF01155.14 gi|282164403|ref|YP_003356788.1| - 0.047 13.3 0.3 0.11 12.2 0.2 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|282164403|ref|YP_003356788.1| - 1.2 8.8 5.6 15 5.3 0.0 3.4 3 0 0 3 3 3 0 Putative transposase DNA-binding domain MazG-like PF12643.2 gi|282164404|ref|YP_003356789.1| - 0.013 15.3 0.1 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 MazG-like family MazG PF03819.12 gi|282164404|ref|YP_003356789.1| - 0.86 9.5 3.7 3.3 7.7 2.6 2.0 1 1 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain HypA PF01155.14 gi|282164405|ref|YP_003356790.1| - 0.00021 20.9 7.4 0.042 13.5 2.0 2.1 2 0 0 2 2 2 2 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|282164405|ref|YP_003356790.1| - 0.00046 19.3 10.6 0.022 13.9 0.1 3.1 3 0 0 3 3 3 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|282164405|ref|YP_003356790.1| - 0.0038 17.2 8.8 0.14 12.2 0.0 3.3 2 1 1 3 3 3 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|282164405|ref|YP_003356790.1| - 0.013 14.9 9.9 0.77 9.3 0.1 3.2 2 1 0 2 2 2 0 zinc-ribbon domain IBR PF01485.16 gi|282164405|ref|YP_003356790.1| - 0.018 14.9 0.3 0.018 14.9 0.2 3.1 2 1 0 2 2 1 0 IBR domain Ribosomal_L37ae PF01780.14 gi|282164405|ref|YP_003356790.1| - 0.051 13.4 5.0 0.45 10.4 0.1 2.5 1 1 1 2 2 2 0 Ribosomal L37ae protein family DZR PF12773.2 gi|282164405|ref|YP_003356790.1| - 0.054 13.3 14.7 0.41 10.5 10.2 2.3 1 1 0 1 1 1 0 Double zinc ribbon T4_baseplate PF12322.3 gi|282164405|ref|YP_003356790.1| - 0.069 12.3 2.8 0.064 12.4 1.2 1.5 1 1 0 1 1 1 0 T4 bacteriophage base plate protein Zn-ribbon_8 PF09723.5 gi|282164405|ref|YP_003356790.1| - 0.081 12.8 0.7 0.081 12.8 0.5 3.8 3 1 0 3 3 2 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|282164405|ref|YP_003356790.1| - 0.16 12.0 7.2 2.1 8.3 0.0 3.1 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Molybdop_Fe4S4 PF04879.11 gi|282164405|ref|YP_003356790.1| - 0.18 11.6 5.7 1.1 9.0 0.0 2.7 3 0 0 3 3 2 0 Molybdopterin oxidoreductase Fe4S4 domain zinc_ribbon_4 PF13717.1 gi|282164405|ref|YP_003356790.1| - 0.34 10.6 12.4 0.25 11.0 1.0 3.8 3 1 1 4 4 4 0 zinc-ribbon domain FYDLN_acid PF09538.5 gi|282164405|ref|YP_003356790.1| - 0.35 11.4 7.7 2 9.0 2.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_5 PF13719.1 gi|282164405|ref|YP_003356790.1| - 0.47 10.0 12.9 0.33 10.5 1.1 3.9 3 1 0 3 3 3 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|282164405|ref|YP_003356790.1| - 0.53 10.1 7.0 4.7 7.1 0.1 2.4 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS1 PF03811.8 gi|282164405|ref|YP_003356790.1| - 0.79 9.2 0.1 0.79 9.2 0.0 3.7 4 0 0 4 4 4 0 InsA N-terminal domain Cys_rich_KTR PF14205.1 gi|282164405|ref|YP_003356790.1| - 0.92 9.0 7.3 1.3 8.5 0.5 3.0 3 0 0 3 3 3 0 Cysteine-rich KTR TF_Zn_Ribbon PF08271.7 gi|282164405|ref|YP_003356790.1| - 0.97 8.8 12.0 0.4 10.0 0.1 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding zf-trcl PF13451.1 gi|282164405|ref|YP_003356790.1| - 1 9.0 8.2 1.9 8.1 0.1 3.3 2 1 1 3 3 3 0 Probable zinc-binding domain zf-LITAF-like PF10601.4 gi|282164405|ref|YP_003356790.1| - 2.1 8.2 9.2 1.8 8.4 0.1 3.0 2 1 0 2 2 2 0 LITAF-like zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|282164405|ref|YP_003356790.1| - 2.7 8.1 0.0 2.7 8.1 0.0 3.8 4 0 0 4 4 4 0 Zinc-binding domain of primase-helicase DUF1272 PF06906.6 gi|282164405|ref|YP_003356790.1| - 2.8 7.8 9.8 19 5.2 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) CpXC PF14353.1 gi|282164405|ref|YP_003356790.1| - 5.3 7.0 11.8 2.6 8.0 0.2 3.1 3 1 1 4 4 3 0 CpXC protein DUF329 PF03884.9 gi|282164405|ref|YP_003356790.1| - 6.6 6.3 9.9 8.8 5.9 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF329) DNA_ligase_ZBD PF03119.11 gi|282164405|ref|YP_003356790.1| - 7.4 6.3 10.5 1.2 8.8 0.2 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Cys_rich_CPXG PF14255.1 gi|282164405|ref|YP_003356790.1| - 8.2 6.3 11.9 2 8.3 0.8 2.9 3 0 0 3 3 2 0 Cysteine-rich CPXCG Ogr_Delta PF04606.7 gi|282164405|ref|YP_003356790.1| - 9.1 6.0 10.7 1.1 9.0 0.1 3.3 4 0 0 4 4 4 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1595 PF12760.2 gi|282164405|ref|YP_003356790.1| - 9.4 6.1 16.1 0.91 9.3 0.4 3.7 2 2 1 3 3 3 0 Transposase zinc-ribbon domain NAD_kinase PF01513.16 gi|282164406|ref|YP_003356791.1| - 1.1e-55 188.4 0.1 1.2e-55 188.2 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|282164406|ref|YP_003356791.1| - 0.054 12.9 0.0 0.093 12.1 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Rb_C PF08934.5 gi|282164406|ref|YP_003356791.1| - 0.062 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Rb C-terminal domain DUF1801 PF08818.6 gi|282164407|ref|YP_003356792.1| - 1.2e-21 76.7 0.0 1.7e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DU1801) eIF-5a PF01287.15 gi|282164408|ref|YP_003356793.1| - 7.6e-14 51.4 0.2 1.6e-13 50.3 0.2 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|282164408|ref|YP_003356793.1| - 5.8e-07 29.2 0.0 9.5e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|282164408|ref|YP_003356793.1| - 0.11 12.3 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 KOW motif Arginase PF00491.16 gi|282164409|ref|YP_003356794.1| - 7e-79 265.0 0.0 7.8e-79 264.8 0.0 1.0 1 0 0 1 1 1 1 Arginase family KGG PF10685.4 gi|282164410|ref|YP_003356795.1| - 1.6e-15 56.5 15.0 0.00092 19.0 0.2 4.2 4 0 0 4 4 4 4 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282164410|ref|YP_003356795.1| - 3.9e-07 30.3 15.6 2.5e-05 24.5 10.7 2.1 1 1 0 1 1 1 1 Small hydrophilic plant seed protein TUSC2 PF15000.1 gi|282164410|ref|YP_003356795.1| - 0.0018 18.3 6.3 3.5 7.7 0.1 3.2 1 1 2 3 3 3 3 Tumour suppressor candidate 2 SASP PF00269.15 gi|282164410|ref|YP_003356795.1| - 2.4 8.0 8.8 5 7.0 2.7 2.4 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type HATPase_c PF02518.21 gi|282164411|ref|YP_003356796.1| - 3.2e-12 46.1 0.0 3.6e-12 45.9 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ribosomal_S13_N PF08069.7 gi|282164412|ref|YP_003356797.1| - 1e-23 82.8 0.1 1.8e-23 82.1 0.1 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|282164412|ref|YP_003356797.1| - 2.8e-19 68.6 0.2 3.7e-19 68.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DHHA1 PF02272.14 gi|282164413|ref|YP_003356798.1| - 2.5e-13 49.5 1.0 1.3e-12 47.2 1.1 1.9 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.15 gi|282164413|ref|YP_003356798.1| - 9.2e-13 48.0 0.3 1.4e-12 47.4 0.2 1.2 1 0 0 1 1 1 1 DHH family CDC45 PF02724.9 gi|282164413|ref|YP_003356798.1| - 0.0038 15.3 0.1 0.0053 14.8 0.1 1.1 1 0 0 1 1 1 1 CDC45-like protein AdoMet_dc PF02675.10 gi|282164415|ref|YP_003356800.1| - 2.6e-09 36.8 0.0 3.2e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase tRNA-synt_2b PF00587.20 gi|282164416|ref|YP_003356801.1| - 5.5e-38 130.2 0.0 8.3e-38 129.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|282164416|ref|YP_003356801.1| - 5e-32 110.1 6.5 8.3e-32 109.4 4.5 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain tRNA-synt_His PF13393.1 gi|282164416|ref|YP_003356801.1| - 0.028 13.4 1.1 0.19 10.7 0.0 2.1 2 0 0 2 2 2 0 Histidyl-tRNA synthetase Cauli_AT PF03233.8 gi|282164416|ref|YP_003356801.1| - 0.28 10.8 2.2 0.47 10.1 1.5 1.3 1 0 0 1 1 1 0 Aphid transmission protein IncA PF04156.9 gi|282164416|ref|YP_003356801.1| - 0.41 10.2 1.9 0.78 9.3 1.3 1.4 1 0 0 1 1 1 0 IncA protein Lactamase_B PF00753.22 gi|282164417|ref|YP_003356802.1| - 9.8e-17 61.2 0.3 6e-16 58.6 0.2 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|282164417|ref|YP_003356802.1| - 5.2e-08 32.6 0.0 5.8e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|282164417|ref|YP_003356802.1| - 0.004 16.8 0.0 0.0066 16.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Phosphodiest PF01663.17 gi|282164418|ref|YP_003356803.1| - 3.9e-22 79.0 0.0 2e-20 73.4 0.0 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase NUDIX PF00293.23 gi|282164419|ref|YP_003356804.1| - 4.3e-21 74.9 0.1 5.4e-21 74.6 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|282164419|ref|YP_003356804.1| - 7.8e-05 22.0 0.0 9.8e-05 21.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Stimulus_sens_1 PF13756.1 gi|282164419|ref|YP_003356804.1| - 0.055 13.8 0.0 0.085 13.2 0.0 1.3 1 0 0 1 1 1 0 Stimulus-sensing domain Response_reg PF00072.19 gi|282164420|ref|YP_003356805.1| - 1.5e-17 63.5 0.0 1.9e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Prok-JAB PF14464.1 gi|282164421|ref|YP_003356806.1| - 1.4e-11 43.9 0.0 1.7e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|282164421|ref|YP_003356806.1| - 0.016 14.9 0.0 0.12 12.0 0.0 1.9 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease CTP_transf_2 PF01467.21 gi|282164422|ref|YP_003356807.1| - 9.6e-15 54.9 0.1 1.4e-14 54.4 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase Semialdhyde_dh PF01118.19 gi|282164423|ref|YP_003356808.1| - 8.8e-36 122.8 0.0 2.1e-35 121.6 0.0 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|282164423|ref|YP_003356808.1| - 2.8e-26 92.5 0.0 4.3e-26 91.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.12 gi|282164423|ref|YP_003356808.1| - 1.6e-05 25.1 0.0 4.1e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|282164423|ref|YP_003356808.1| - 0.013 15.9 0.0 0.048 14.1 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.1 gi|282164423|ref|YP_003356808.1| - 0.036 14.0 0.0 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 NADH(P)-binding DUF1326 PF07040.6 gi|282164423|ref|YP_003356808.1| - 0.081 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1326) DapB_N PF01113.15 gi|282164423|ref|YP_003356808.1| - 0.12 12.3 0.0 0.3 11.0 0.0 1.7 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus KR PF08659.5 gi|282164423|ref|YP_003356808.1| - 0.12 12.0 0.0 0.85 9.2 0.0 2.1 2 0 0 2 2 2 0 KR domain CBS PF00571.23 gi|282164424|ref|YP_003356809.1| - 1.5e-34 117.5 7.6 4.6e-17 61.5 0.2 2.3 2 0 0 2 2 2 2 CBS domain ArgJ PF01960.13 gi|282164425|ref|YP_003356810.1| - 2.2e-132 441.1 6.9 2.6e-132 440.8 4.8 1.0 1 0 0 1 1 1 1 ArgJ family tRNA-synt_His PF13393.1 gi|282164426|ref|YP_003356811.1| - 6.6e-52 176.5 0.0 8.7e-52 176.1 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|282164426|ref|YP_003356811.1| - 1.8e-18 66.7 0.0 3e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|282164426|ref|YP_003356811.1| - 5.4e-13 48.6 0.1 1.1e-12 47.7 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|282164426|ref|YP_003356811.1| - 0.00018 20.7 0.0 0.00038 19.7 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HATPase_c PF02518.21 gi|282164427|ref|YP_003356812.1| - 1.2e-19 70.0 0.1 3e-19 68.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|282164427|ref|YP_003356812.1| - 1e-13 51.2 0.6 9.6e-12 44.9 0.0 2.9 3 0 0 3 3 3 1 HAMP domain V_ATPase_I PF01496.14 gi|282164427|ref|YP_003356812.1| - 0.00027 18.9 6.8 0.0035 15.2 2.9 2.2 2 0 0 2 2 2 2 V-type ATPase 116kDa subunit family HATPase_c_2 PF13581.1 gi|282164427|ref|YP_003356812.1| - 0.0022 17.7 0.0 0.0075 16.0 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|282164427|ref|YP_003356812.1| - 0.032 13.9 0.5 0.11 12.1 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 4HB_MCP_1 PF12729.2 gi|282164427|ref|YP_003356812.1| - 0.73 9.1 16.8 0.89 8.8 0.6 4.3 4 0 0 4 4 4 0 Four helix bundle sensory module for signal transduction DUF1664 PF07889.7 gi|282164427|ref|YP_003356812.1| - 1.4 8.7 8.4 0.26 11.0 1.6 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF904 PF06005.7 gi|282164427|ref|YP_003356812.1| - 1.8 8.9 13.5 0.32 11.3 6.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF904) COG2 PF06148.6 gi|282164427|ref|YP_003356812.1| - 2.8 7.8 9.5 21 5.0 3.3 3.3 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 NMT1 PF09084.6 gi|282164428|ref|YP_003356813.1| - 2.6e-31 108.9 0.0 4.6e-31 108.0 0.0 1.4 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|282164428|ref|YP_003356813.1| - 1.1e-16 61.0 0.0 1.5e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|282164428|ref|YP_003356813.1| - 8.3e-07 28.4 0.0 6.6e-06 25.5 0.0 2.0 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.2 gi|282164428|ref|YP_003356813.1| - 0.00062 19.2 0.0 0.00088 18.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein YhfZ_C PF14503.1 gi|282164428|ref|YP_003356813.1| - 0.028 13.7 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 YhfZ C-terminal domain DUF2637 PF10935.3 gi|282164428|ref|YP_003356813.1| - 0.11 12.4 1.4 0.18 11.7 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2637) DUF790 PF05626.6 gi|282164429|ref|YP_003356814.1| - 5.1e-118 393.8 0.0 6e-118 393.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) DUF2312 PF10073.4 gi|282164429|ref|YP_003356814.1| - 0.03 13.6 0.0 0.082 12.2 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2312) ResIII PF04851.10 gi|282164430|ref|YP_003356815.1| - 2e-20 73.3 0.0 3.6e-18 66.0 0.0 2.8 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|282164430|ref|YP_003356815.1| - 2.5e-16 59.2 0.1 8.4e-16 57.6 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|282164430|ref|YP_003356815.1| - 3.7e-08 33.0 0.0 9.4e-08 31.7 0.0 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|282164430|ref|YP_003356815.1| - 0.019 15.0 0.0 0.53 10.4 0.0 3.1 3 1 0 3 3 3 0 AAA domain SNF2_N PF00176.18 gi|282164430|ref|YP_003356815.1| - 0.022 13.5 0.0 0.043 12.5 0.0 1.5 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_10 PF12846.2 gi|282164430|ref|YP_003356815.1| - 0.11 11.8 0.7 0.54 9.6 0.0 2.3 3 1 0 3 3 3 0 AAA-like domain COX4_pro PF03626.9 gi|282164431|ref|YP_003356816.1| - 0.046 13.8 3.7 0.17 11.9 2.3 1.8 1 1 0 1 1 1 0 Prokaryotic Cytochrome C oxidase subunit IV Gram_pos_anchor PF00746.16 gi|282164431|ref|YP_003356816.1| - 0.31 10.8 0.1 0.31 10.8 0.1 2.3 3 0 0 3 3 3 0 Gram positive anchor DUF1440 PF07274.7 gi|282164432|ref|YP_003356817.1| - 0.13 12.2 0.8 0.16 11.9 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1440) DUF378 PF04070.7 gi|282164432|ref|YP_003356817.1| - 3.6 7.2 10.5 1.3 8.6 4.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF378) FtsZ_C PF12327.3 gi|282164433|ref|YP_003356818.1| - 1.7e-34 117.7 1.4 4.3e-34 116.4 0.1 2.4 2 1 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|282164433|ref|YP_003356818.1| - 1.7e-32 112.9 1.3 7.3e-32 110.9 0.9 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|282164433|ref|YP_003356818.1| - 0.097 12.4 1.0 0.32 10.8 0.7 1.9 1 1 0 1 1 1 0 ThiF family DUF3795 PF12675.2 gi|282164434|ref|YP_003356819.1| - 1.2e-08 35.0 13.8 3e-08 33.7 9.6 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) Zn_ribbon_recom PF13408.1 gi|282164434|ref|YP_003356819.1| - 0.041 14.1 1.0 0.041 14.1 0.7 2.6 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain ABC_tran PF00005.22 gi|282164435|ref|YP_003356820.1| - 4e-22 79.0 0.0 5.5e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282164435|ref|YP_003356820.1| - 1.7e-10 41.3 1.1 1.3e-06 28.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282164435|ref|YP_003356820.1| - 2.9e-06 26.6 0.0 5e-05 22.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|282164435|ref|YP_003356820.1| - 0.0042 16.5 0.4 0.0067 15.9 0.3 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|282164435|ref|YP_003356820.1| - 0.0071 16.3 0.4 0.022 14.7 0.1 1.8 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.17 gi|282164435|ref|YP_003356820.1| - 0.01 15.2 0.3 0.02 14.3 0.2 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|282164435|ref|YP_003356820.1| - 0.013 15.8 0.1 0.022 15.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|282164435|ref|YP_003356820.1| - 0.14 11.2 0.1 0.29 10.2 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SMC_N PF02463.14 gi|282164435|ref|YP_003356820.1| - 0.16 11.1 0.0 1.5 7.9 0.0 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|282164435|ref|YP_003356820.1| - 0.19 11.1 0.4 0.39 10.1 0.3 1.5 1 0 0 1 1 1 0 AAA-like domain UPF0047 PF01894.12 gi|282164437|ref|YP_003356822.1| - 1.3e-42 144.3 0.0 1.5e-42 144.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 PAS_9 PF13426.1 gi|282164438|ref|YP_003356823.1| - 1.5e-30 105.6 0.1 4.7e-16 59.0 0.0 2.3 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|282164438|ref|YP_003356823.1| - 3.9e-28 97.6 0.0 3.4e-14 52.8 0.0 2.5 3 0 0 3 3 3 2 PAS fold PAS PF00989.19 gi|282164438|ref|YP_003356823.1| - 5.9e-27 93.6 0.0 3.7e-14 52.4 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|282164438|ref|YP_003356823.1| - 5.2e-15 54.6 0.0 8.7e-07 28.5 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|282164438|ref|YP_003356823.1| - 1.3e-12 47.6 0.0 5.3e-09 36.0 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_10 PF13596.1 gi|282164438|ref|YP_003356823.1| - 1.3e-08 35.0 0.4 0.00024 21.3 0.0 2.6 2 1 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|282164438|ref|YP_003356823.1| - 8.9e-05 22.4 0.2 0.019 14.9 0.1 3.5 2 2 0 2 2 2 1 PAS fold HTH_20 PF12840.2 gi|282164438|ref|YP_003356823.1| - 0.0004 20.1 0.0 0.00073 19.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|282164438|ref|YP_003356823.1| - 0.00043 19.8 0.1 0.00089 18.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|282164438|ref|YP_003356823.1| - 0.00044 19.7 0.0 0.00068 19.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|282164438|ref|YP_003356823.1| - 0.0042 16.4 0.0 0.0084 15.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TBPIP PF07106.8 gi|282164438|ref|YP_003356823.1| - 0.0049 16.4 0.0 0.012 15.1 0.0 1.6 2 0 0 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_5 PF01022.15 gi|282164438|ref|YP_003356823.1| - 0.072 12.7 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2111 PF09884.4 gi|282164438|ref|YP_003356823.1| - 0.11 12.3 0.1 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2111) TrmB PF01978.14 gi|282164438|ref|YP_003356823.1| - 0.11 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TPR_12 PF13424.1 gi|282164439|ref|YP_003356824.1| - 3.2e-34 116.7 6.9 1e-12 47.7 0.0 3.5 2 1 0 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164439|ref|YP_003356824.1| - 1e-33 113.5 6.0 2.9e-07 29.8 0.0 5.5 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|282164439|ref|YP_003356824.1| - 2.1e-33 113.7 14.0 1.5e-11 43.7 0.6 3.8 1 1 3 4 4 4 4 TPR repeat TPR_7 PF13176.1 gi|282164439|ref|YP_003356824.1| - 2.9e-28 95.3 4.5 2.1e-05 23.9 0.0 5.8 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282164439|ref|YP_003356824.1| - 1.6e-27 93.1 3.2 6.4e-05 22.5 0.0 5.7 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282164439|ref|YP_003356824.1| - 1.4e-23 82.0 2.1 1.9e-05 24.4 0.1 5.8 6 0 0 6 6 5 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282164439|ref|YP_003356824.1| - 7.5e-22 75.4 4.0 3.8e-05 23.1 0.0 5.7 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164439|ref|YP_003356824.1| - 1.7e-12 46.8 2.3 0.37 11.5 0.1 6.2 5 1 1 6 6 6 3 Tetratricopeptide repeat Apc5 PF12862.2 gi|282164439|ref|YP_003356824.1| - 5.3e-12 45.4 0.9 0.026 14.3 0.0 4.6 2 1 3 5 5 5 3 Anaphase-promoting complex subunit 5 TPR_17 PF13431.1 gi|282164439|ref|YP_003356824.1| - 2.7e-09 36.4 1.4 2.7 8.4 0.1 6.0 5 1 0 5 5 5 2 Tetratricopeptide repeat RPN7 PF10602.4 gi|282164439|ref|YP_003356824.1| - 9.3e-09 34.9 3.3 0.0017 17.7 0.1 4.0 1 1 3 4 4 4 3 26S proteasome subunit RPN7 TPR_16 PF13432.1 gi|282164439|ref|YP_003356824.1| - 4e-08 33.7 10.7 0.00076 20.0 0.1 5.3 3 3 3 6 6 6 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|282164439|ref|YP_003356824.1| - 5.8e-08 32.7 1.3 0.0044 17.1 0.1 2.6 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 PPR PF01535.15 gi|282164439|ref|YP_003356824.1| - 1e-07 31.4 5.5 3.5 7.8 0.0 5.6 5 0 0 5 5 5 2 PPR repeat TPR_19 PF14559.1 gi|282164439|ref|YP_003356824.1| - 1.2e-07 31.9 3.9 1.9e-05 24.9 0.0 3.7 3 1 1 4 4 3 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282164439|ref|YP_003356824.1| - 1.2e-06 28.5 1.1 28 5.4 0.0 5.8 5 0 0 5 5 5 0 Tetratricopeptide repeat AP_endonuc_2 PF01261.19 gi|282164439|ref|YP_003356824.1| - 4.5e-06 26.0 0.1 8.9e-06 25.1 0.1 1.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF3856 PF12968.2 gi|282164439|ref|YP_003356824.1| - 4.9e-06 26.4 3.9 0.077 12.8 0.2 3.7 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) SNAP PF14938.1 gi|282164439|ref|YP_003356824.1| - 8.6e-06 25.0 4.4 0.00018 20.7 0.2 2.2 2 0 0 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_21 PF09976.4 gi|282164439|ref|YP_003356824.1| - 0.00052 19.9 0.4 0.0058 16.5 0.0 2.5 2 1 1 3 3 3 1 Tetratricopeptide repeat Rapsyn_N PF10579.4 gi|282164439|ref|YP_003356824.1| - 0.001 18.7 0.8 7.2 6.5 0.0 4.4 1 1 4 5 5 5 0 Rapsyn N-terminal myristoylation and linker region TPR_9 PF13371.1 gi|282164439|ref|YP_003356824.1| - 0.0036 17.1 1.8 17 5.3 0.0 4.3 4 1 0 4 4 4 0 Tetratricopeptide repeat DUF2225 PF09986.4 gi|282164439|ref|YP_003356824.1| - 0.04 13.3 1.4 1.5 8.2 0.3 2.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) Foie-gras_1 PF11817.3 gi|282164439|ref|YP_003356824.1| - 0.065 12.6 1.3 6.6 6.1 0.2 2.9 1 1 1 2 2 2 0 Foie gras liver health family 1 TPR_3 PF07720.7 gi|282164439|ref|YP_003356824.1| - 0.071 12.9 5.4 23 4.8 0.0 4.5 5 0 0 5 5 5 0 Tetratricopeptide repeat PPR_1 PF12854.2 gi|282164439|ref|YP_003356824.1| - 0.3 10.6 1.3 2 7.9 0.1 2.9 3 0 0 3 3 3 0 PPR repeat PPR_2 PF13041.1 gi|282164439|ref|YP_003356824.1| - 0.32 11.0 1.5 33 4.5 0.0 3.7 4 0 0 4 4 4 0 PPR repeat family tRNA-synt_1 PF00133.17 gi|282164441|ref|YP_003356826.1| - 4.9e-63 213.0 0.6 1e-43 149.2 0.0 2.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|282164441|ref|YP_003356826.1| - 2.2e-22 79.3 0.5 2.4e-10 39.6 0.0 4.2 3 1 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|282164441|ref|YP_003356826.1| - 3.8e-20 72.1 2.2 1.2e-19 70.5 0.4 2.3 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|282164441|ref|YP_003356826.1| - 2e-09 37.0 0.0 4.9e-09 35.7 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|282164441|ref|YP_003356826.1| - 1.9e-07 30.4 0.7 2.4e-05 23.6 0.0 3.1 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|282164441|ref|YP_003356826.1| - 0.0044 15.7 0.0 0.015 14.0 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) Phage_integrase PF00589.17 gi|282164442|ref|YP_003356827.1| - 2.7e-28 98.7 0.0 4.3e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Ank_2 PF12796.2 gi|282164444|ref|YP_003356829.1| - 6.7e-98 321.2 33.8 2.7e-24 85.3 0.8 4.8 2 1 5 7 7 7 6 Ankyrin repeats (3 copies) Ank PF00023.25 gi|282164444|ref|YP_003356829.1| - 5.7e-52 171.0 16.0 7e-08 31.9 0.0 8.4 8 0 0 8 8 8 6 Ankyrin repeat Ank_5 PF13857.1 gi|282164444|ref|YP_003356829.1| - 1.3e-37 126.9 12.8 1.5e-09 37.8 0.1 7.3 3 1 4 7 7 7 6 Ankyrin repeats (many copies) Ank_3 PF13606.1 gi|282164444|ref|YP_003356829.1| - 4.3e-36 119.3 18.2 1.2e-05 25.1 0.0 8.6 8 0 0 8 8 8 6 Ankyrin repeat Ank_4 PF13637.1 gi|282164444|ref|YP_003356829.1| - 5.9e-35 119.0 13.3 4.5e-10 39.7 0.2 7.0 2 1 4 7 7 7 6 Ankyrin repeats (many copies) HEAT_2 PF13646.1 gi|282164444|ref|YP_003356829.1| - 2.3e-31 107.8 11.0 5.2e-15 55.4 0.3 6.9 5 2 1 6 6 6 4 HEAT repeats HEAT_PBS PF03130.11 gi|282164444|ref|YP_003356829.1| - 1.8e-24 83.6 18.1 0.0029 17.9 0.0 12.8 14 1 0 14 14 13 6 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|282164444|ref|YP_003356829.1| - 2.6e-11 42.6 0.4 0.0017 18.2 0.0 5.2 5 0 0 5 5 4 2 HEAT repeat HEAT_EZ PF13513.1 gi|282164444|ref|YP_003356829.1| - 4.7e-07 30.0 11.0 0.054 14.0 0.1 7.1 6 2 3 9 9 8 3 HEAT-like repeat Arm PF00514.18 gi|282164444|ref|YP_003356829.1| - 0.00031 20.4 2.0 0.87 9.5 0.0 5.2 4 2 1 5 5 5 1 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|282164444|ref|YP_003356829.1| - 0.00076 17.9 0.2 0.0011 17.3 0.2 1.3 1 0 0 1 1 1 1 Adaptin N terminal region DUF2652 PF10851.3 gi|282164444|ref|YP_003356829.1| - 0.049 13.6 0.3 20 5.1 0.0 3.5 2 1 2 4 4 4 0 Protein of unknown function (DUF2652) D5_N PF08706.6 gi|282164445|ref|YP_003356830.1| - 6.4e-24 84.7 4.0 3.1e-23 82.5 1.0 2.2 2 0 0 2 2 2 2 D5 N terminal like Prim-Pol PF09250.6 gi|282164446|ref|YP_003356831.1| - 2.2e-09 37.4 0.0 3.4e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal HSDR_N_2 PF13588.1 gi|282164447|ref|YP_003356832.1| - 7.1e-12 45.1 0.0 2.7e-11 43.2 0.0 2.0 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.9 gi|282164447|ref|YP_003356832.1| - 4.1e-11 42.9 5.4 6e-07 29.3 0.1 3.3 2 1 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_3 PF13366.1 gi|282164447|ref|YP_003356832.1| - 0.065 13.2 0.4 0.48 10.4 0.1 2.4 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Glyco_hydro_53 PF07745.8 gi|282164448|ref|YP_003356833.1| - 0.024 13.4 0.0 0.028 13.2 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 53 DnaJ_CXXCXGXG PF00684.14 gi|282164448|ref|YP_003356833.1| - 0.088 12.8 5.8 0.75 9.8 1.4 2.5 2 0 0 2 2 2 0 DnaJ central domain DZR PF12773.2 gi|282164448|ref|YP_003356833.1| - 0.53 10.1 9.6 14 5.5 6.6 2.4 1 1 0 1 1 1 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|282164448|ref|YP_003356833.1| - 0.69 9.4 5.2 6 6.4 0.0 2.6 2 1 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|282164448|ref|YP_003356833.1| - 3.5 6.9 5.8 15 4.9 0.0 2.6 2 1 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|282164448|ref|YP_003356833.1| - 5.2 6.8 7.5 21 4.8 1.7 2.7 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS HNH PF01844.18 gi|282164449|ref|YP_003356834.1| - 4.2e-10 39.3 7.3 7.2e-10 38.5 5.0 1.4 1 0 0 1 1 1 1 HNH endonuclease NinF PF05810.7 gi|282164449|ref|YP_003356834.1| - 0.0024 17.6 0.6 2.5 7.9 0.0 2.3 2 0 0 2 2 2 2 NinF protein DZR PF12773.2 gi|282164449|ref|YP_003356834.1| - 0.0072 16.1 0.8 0.016 15.0 0.5 1.6 1 1 0 1 1 1 1 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|282164449|ref|YP_003356834.1| - 0.016 15.4 4.0 3.8 7.8 1.6 2.3 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.8 gi|282164449|ref|YP_003356834.1| - 0.017 14.5 2.0 3.8 7.0 0.2 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|282164449|ref|YP_003356834.1| - 0.036 13.2 0.7 1.7 7.9 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Endonuclease_7 PF02945.10 gi|282164449|ref|YP_003356834.1| - 0.049 13.3 3.9 0.12 12.0 2.7 1.6 1 1 0 1 1 1 0 Recombination endonuclease VII DUF3279 PF11682.3 gi|282164449|ref|YP_003356834.1| - 0.094 12.2 1.8 0.18 11.3 1.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3279) PhnA_Zn_Ribbon PF08274.7 gi|282164449|ref|YP_003356834.1| - 0.096 12.4 0.0 0.18 11.5 0.0 1.5 1 1 0 1 1 1 0 PhnA Zinc-Ribbon C1_1 PF00130.17 gi|282164449|ref|YP_003356834.1| - 0.13 11.9 1.8 0.48 10.1 1.3 1.8 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Cytochrom_NNT PF03264.9 gi|282164449|ref|YP_003356834.1| - 0.18 11.2 4.6 0.26 10.7 3.2 1.3 1 0 0 1 1 1 0 NapC/NirT cytochrome c family, N-terminal region zf-NADH-PPase PF09297.6 gi|282164449|ref|YP_003356834.1| - 0.21 11.1 1.6 0.49 9.9 0.1 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ogr_Delta PF04606.7 gi|282164449|ref|YP_003356834.1| - 0.41 10.3 4.3 6.1 6.5 3.0 2.2 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger Cytochrome_C7 PF14522.1 gi|282164449|ref|YP_003356834.1| - 1.1 8.9 7.8 2.8 7.6 5.4 1.7 1 1 0 1 1 1 0 Cytochrome c7 Cytochrom_c3_2 PF14537.1 gi|282164449|ref|YP_003356834.1| - 1.3 9.4 7.6 2 8.8 4.5 1.7 1 1 1 2 2 2 0 Cytochrome c3 Paired_CXXCH_1 PF09699.5 gi|282164449|ref|YP_003356834.1| - 1.4 8.4 5.0 0.92 9.0 1.1 2.2 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) TAP42 PF04177.7 gi|282164451|ref|YP_003356836.1| - 0.011 14.7 1.3 0.016 14.1 0.9 1.2 1 0 0 1 1 1 0 TAP42-like family Tox-PL PF15644.1 gi|282164451|ref|YP_003356836.1| - 0.016 15.9 0.1 0.067 13.9 0.0 2.1 2 1 0 2 2 2 0 Papain fold toxin 1 Cupredoxin_1 PF13473.1 gi|282164452|ref|YP_003356837.1| - 5.1e-14 52.0 0.1 6.3e-14 51.7 0.1 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|282164452|ref|YP_003356837.1| - 6.3e-10 39.1 0.8 0.00012 22.1 0.2 2.1 1 1 1 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Methyltransf_FA PF12248.3 gi|282164452|ref|YP_003356837.1| - 0.05 13.6 0.0 0.06 13.3 0.0 1.1 1 0 0 1 1 1 0 Farnesoic acid 0-methyl transferase PAS_3 PF08447.6 gi|282164453|ref|YP_003356838.1| - 8e-27 93.1 0.0 1.9e-14 53.5 0.0 2.4 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|282164453|ref|YP_003356838.1| - 1.3e-19 69.8 0.1 7.3e-19 67.5 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|282164453|ref|YP_003356838.1| - 3.2e-14 53.1 0.0 5.8e-09 36.2 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|282164453|ref|YP_003356838.1| - 3.8e-12 45.9 0.0 4.1e-05 23.3 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|282164453|ref|YP_003356838.1| - 6.1e-05 23.0 0.0 0.44 10.6 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|282164453|ref|YP_003356838.1| - 0.00065 19.4 0.0 0.0021 17.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|282164453|ref|YP_003356838.1| - 0.0014 18.4 0.1 0.0095 15.7 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain DUF4118 PF13493.1 gi|282164453|ref|YP_003356838.1| - 0.12 12.5 6.8 0.25 11.5 4.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) PadR PF03551.9 gi|282164455|ref|YP_003356840.1| - 7.1e-24 83.3 0.0 1e-23 82.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|282164455|ref|YP_003356840.1| - 0.0012 18.8 0.0 0.0052 16.7 0.0 1.9 1 1 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|282164455|ref|YP_003356840.1| - 0.0034 16.9 0.0 0.0056 16.2 0.0 1.5 1 1 0 1 1 1 1 HxlR-like helix-turn-helix ArsR PF09824.4 gi|282164455|ref|YP_003356840.1| - 0.03 13.6 1.2 0.16 11.3 0.0 2.3 1 1 1 2 2 2 0 ArsR transcriptional regulator RDD PF06271.7 gi|282164456|ref|YP_003356841.1| - 8.6e-22 77.5 7.6 1.1e-21 77.1 5.3 1.1 1 0 0 1 1 1 1 RDD family DUF805 PF05656.9 gi|282164456|ref|YP_003356841.1| - 1.1 9.0 10.0 0.33 10.8 4.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF805) ABC_tran PF00005.22 gi|282164459|ref|YP_003356844.1| - 3.9e-35 121.1 0.0 6.1e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282164459|ref|YP_003356844.1| - 1.1e-12 48.5 1.5 1.7e-11 44.6 1.0 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|282164459|ref|YP_003356844.1| - 7e-10 38.5 3.8 3.7e-08 32.8 2.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|282164459|ref|YP_003356844.1| - 3.6e-07 29.6 0.0 7.4e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|282164459|ref|YP_003356844.1| - 3.9e-07 30.5 0.1 6e-07 29.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|282164459|ref|YP_003356844.1| - 2.8e-06 26.6 0.4 0.0017 17.4 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|282164459|ref|YP_003356844.1| - 0.00031 20.7 0.1 0.00069 19.6 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|282164459|ref|YP_003356844.1| - 0.00075 20.3 0.0 0.0017 19.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|282164459|ref|YP_003356844.1| - 0.0011 19.2 0.0 0.0023 18.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|282164459|ref|YP_003356844.1| - 0.0016 18.7 0.0 0.0031 17.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|282164459|ref|YP_003356844.1| - 0.0018 18.4 0.4 0.014 15.4 0.3 2.0 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|282164459|ref|YP_003356844.1| - 0.0021 17.7 0.0 0.0045 16.7 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|282164459|ref|YP_003356844.1| - 0.0035 16.9 0.1 0.056 12.9 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|282164459|ref|YP_003356844.1| - 0.0055 16.4 0.0 0.035 13.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|282164459|ref|YP_003356844.1| - 0.01 15.5 0.0 0.019 14.6 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase AAA_25 PF13481.1 gi|282164459|ref|YP_003356844.1| - 0.01 15.2 0.0 0.051 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|282164459|ref|YP_003356844.1| - 0.01 15.7 0.0 0.036 13.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|282164459|ref|YP_003356844.1| - 0.013 15.4 0.0 0.17 11.8 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|282164459|ref|YP_003356844.1| - 0.013 14.6 0.1 0.024 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|282164459|ref|YP_003356844.1| - 0.015 15.1 0.1 0.078 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|282164459|ref|YP_003356844.1| - 0.021 14.2 0.0 0.098 12.0 0.0 1.9 2 0 0 2 2 2 0 MutS domain V NACHT PF05729.7 gi|282164459|ref|YP_003356844.1| - 0.025 14.2 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|282164459|ref|YP_003356844.1| - 0.026 14.1 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|282164459|ref|YP_003356844.1| - 0.031 14.0 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain RNA_helicase PF00910.17 gi|282164459|ref|YP_003356844.1| - 0.039 14.1 0.0 0.13 12.4 0.0 1.9 2 0 0 2 2 2 0 RNA helicase Mg_chelatase PF01078.16 gi|282164459|ref|YP_003356844.1| - 0.047 12.8 0.0 0.083 12.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|282164459|ref|YP_003356844.1| - 0.06 12.7 0.4 0.21 11.0 0.1 1.8 1 1 1 2 2 2 0 AAA-like domain KAP_NTPase PF07693.9 gi|282164459|ref|YP_003356844.1| - 0.069 12.1 0.5 0.76 8.7 0.4 2.0 1 1 0 1 1 1 0 KAP family P-loop domain NTPase_1 PF03266.10 gi|282164459|ref|YP_003356844.1| - 0.084 12.5 0.2 0.25 11.0 0.0 1.8 2 0 0 2 2 2 0 NTPase NB-ARC PF00931.17 gi|282164459|ref|YP_003356844.1| - 0.097 11.5 0.5 0.2 10.4 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain G-alpha PF00503.15 gi|282164459|ref|YP_003356844.1| - 0.098 11.3 0.1 0.23 10.1 0.0 1.5 1 1 1 2 2 2 0 G-protein alpha subunit Adeno_IVa2 PF02456.10 gi|282164459|ref|YP_003356844.1| - 0.1 11.2 0.0 0.59 8.7 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein T2SE PF00437.15 gi|282164459|ref|YP_003356844.1| - 0.13 11.1 0.2 0.21 10.4 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_13 PF13166.1 gi|282164459|ref|YP_003356844.1| - 0.15 10.4 0.0 0.52 8.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|282164459|ref|YP_003356844.1| - 0.18 10.3 2.8 3.9 5.9 0.0 3.2 3 1 0 3 3 3 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.18 gi|282164459|ref|YP_003356844.1| - 0.25 11.2 1.0 0.4 10.6 0.7 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase FecCD PF01032.13 gi|282164460|ref|YP_003356845.1| - 2.4e-88 295.9 43.6 4.4e-88 295.0 29.7 1.6 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|282164460|ref|YP_003356845.1| - 1.9e-07 30.6 27.9 1.9e-07 30.6 19.3 2.2 1 1 2 3 3 3 1 ABC 3 transport family Peripla_BP_2 PF01497.13 gi|282164461|ref|YP_003356846.1| - 1.2e-35 122.7 1.4 1.5e-35 122.4 0.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Myco_19_kDa PF05481.7 gi|282164461|ref|YP_003356846.1| - 0.97 9.2 11.8 0.29 10.9 4.6 2.2 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen DUF169 PF02596.10 gi|282164462|ref|YP_003356847.1| - 4.2e-18 65.5 0.0 5.1e-18 65.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 DUF1335 PF07056.6 gi|282164462|ref|YP_003356847.1| - 0.12 12.0 0.1 0.48 10.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1335) AAA_5 PF07728.9 gi|282164463|ref|YP_003356848.1| - 6.4e-25 87.4 0.0 3.4e-24 85.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|282164463|ref|YP_003356848.1| - 2.3e-05 24.6 0.0 6e-05 23.2 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|282164463|ref|YP_003356848.1| - 0.0001 21.9 0.0 0.00021 20.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) T4_baseplate PF12322.3 gi|282164463|ref|YP_003356848.1| - 0.015 14.5 0.1 0.025 13.8 0.0 1.4 1 0 0 1 1 1 0 T4 bacteriophage base plate protein RNase_T PF00929.19 gi|282164463|ref|YP_003356848.1| - 0.029 14.6 0.2 0.096 12.9 0.1 1.8 1 1 1 2 2 2 0 Exonuclease VWA_2 PF13519.1 gi|282164464|ref|YP_003356849.1| - 4e-14 53.0 0.0 7.4e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|282164464|ref|YP_003356849.1| - 9.4e-08 31.8 0.0 2.1e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|282164464|ref|YP_003356849.1| - 1.8e-07 31.0 0.6 3.2e-07 30.2 0.4 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|282164464|ref|YP_003356849.1| - 4.5e-07 29.2 0.0 8.3e-07 28.3 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein DUF3692 PF12469.3 gi|282164464|ref|YP_003356849.1| - 0.005 17.0 0.0 0.01 16.0 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated protein DUF2828 PF11443.3 gi|282164464|ref|YP_003356849.1| - 0.0085 14.3 0.0 0.014 13.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2828) DUF2115 PF09888.4 gi|282164465|ref|YP_003356850.1| - 3.2e-47 160.6 0.0 4e-47 160.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) BNIP3 PF06553.7 gi|282164466|ref|YP_003356851.1| - 0.97 8.7 5.4 0.57 9.5 0.4 2.2 2 0 0 2 2 2 0 BNIP3 DUF2304 PF10066.4 gi|282164466|ref|YP_003356851.1| - 8.3 6.3 16.3 1.6 8.5 5.8 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2304) AIRS_C PF02769.17 gi|282164467|ref|YP_003356852.1| - 3.2e-50 170.1 1.4 9.1e-27 93.9 0.1 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|282164467|ref|YP_003356852.1| - 9.5e-27 93.0 0.2 3.9e-16 59.0 0.0 2.6 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain PurS PF02700.9 gi|282164467|ref|YP_003356852.1| - 3.6e-07 30.0 0.1 0.015 15.2 0.0 3.7 3 1 0 3 3 3 2 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.1 gi|282164468|ref|YP_003356853.1| - 7.6e-82 274.0 0.0 8.5e-82 273.9 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|282164468|ref|YP_003356853.1| - 0.00013 21.4 0.0 0.00024 20.6 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|282164468|ref|YP_003356853.1| - 0.0003 20.4 0.1 0.0023 17.5 0.1 2.3 2 1 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|282164468|ref|YP_003356853.1| - 0.081 12.1 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase GATase PF00117.23 gi|282164468|ref|YP_003356853.1| - 0.12 11.7 0.1 0.22 10.9 0.0 1.7 1 1 0 1 1 1 0 Glutamine amidotransferase class-I YbjQ_1 PF01906.12 gi|282164469|ref|YP_003356854.1| - 7.7e-37 125.9 0.0 8.6e-37 125.7 0.0 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.1 gi|282164469|ref|YP_003356854.1| - 0.0045 16.8 0.1 0.0077 16.0 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4156) O-antigen_lig PF13425.1 gi|282164470|ref|YP_003356855.1| - 9.9 6.1 18.1 12 5.8 12.5 1.3 1 0 0 1 1 1 0 O-antigen ligase like membrane protein E1-E2_ATPase PF00122.15 gi|282164471|ref|YP_003356856.1| - 5.2e-60 202.3 1.8 1.2e-59 201.1 1.3 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|282164471|ref|YP_003356856.1| - 1.1e-32 114.2 0.0 3.8e-32 112.4 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|282164471|ref|YP_003356856.1| - 3.9e-27 94.9 7.3 3.9e-27 94.9 5.1 2.1 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus HAD PF12710.2 gi|282164471|ref|YP_003356856.1| - 3.9e-18 66.2 0.0 8.1e-18 65.2 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|282164471|ref|YP_003356856.1| - 7.1e-11 41.4 0.0 3.6e-10 39.1 0.0 2.2 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|282164471|ref|YP_003356856.1| - 0.00012 21.7 0.2 0.0011 18.6 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|282164471|ref|YP_003356856.1| - 0.0073 16.2 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Usp PF00582.21 gi|282164472|ref|YP_003356857.1| - 1.5e-31 109.4 0.4 2.8e-31 108.5 0.3 1.4 1 1 0 1 1 1 1 Universal stress protein family Cation_efflux PF01545.16 gi|282164473|ref|YP_003356858.1| - 7.2e-65 218.8 10.8 8.4e-65 218.6 7.5 1.0 1 0 0 1 1 1 1 Cation efflux family Cytochrom_B_N PF00033.14 gi|282164473|ref|YP_003356858.1| - 0.067 12.5 1.8 0.27 10.5 1.3 2.0 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Holin_LLH PF09682.5 gi|282164473|ref|YP_003356858.1| - 6 7.0 7.5 0.37 10.9 0.1 2.6 3 1 0 3 3 3 0 Phage holin protein (Holin_LLH) Nramp PF01566.13 gi|282164474|ref|YP_003356859.1| - 8.5e-96 320.8 31.2 1.3e-95 320.2 21.6 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein PsbH PF00737.15 gi|282164474|ref|YP_003356859.1| - 0.026 14.1 0.9 0.026 14.1 0.6 4.2 4 0 0 4 4 4 0 Photosystem II 10 kDa phosphoprotein MgtE_N PF03448.12 gi|282164475|ref|YP_003356860.1| - 6.5e-26 90.6 8.8 1.7e-25 89.2 3.9 2.4 2 0 0 2 2 2 1 MgtE intracellular N domain CBS PF00571.23 gi|282164475|ref|YP_003356860.1| - 3.5e-22 77.8 7.5 9.5e-11 41.3 0.0 3.9 4 0 0 4 4 4 2 CBS domain FliG_M PF14841.1 gi|282164475|ref|YP_003356860.1| - 1.1e-07 31.7 2.4 0.0044 16.9 0.1 4.2 3 1 1 4 4 4 2 FliG middle domain PYRIN PF02758.11 gi|282164475|ref|YP_003356860.1| - 0.00038 20.0 0.5 0.9 9.2 0.0 2.8 1 1 0 2 2 2 2 PAAD/DAPIN/Pyrin domain PRC PF05239.11 gi|282164475|ref|YP_003356860.1| - 0.00044 20.0 6.6 0.0027 17.5 0.5 3.4 3 0 0 3 3 3 1 PRC-barrel domain FliG_C PF01706.11 gi|282164475|ref|YP_003356860.1| - 0.0041 17.0 2.2 0.01 15.8 1.0 2.0 1 1 0 1 1 1 1 FliG C-terminal domain FliG_N PF14842.1 gi|282164475|ref|YP_003356860.1| - 0.064 13.3 2.2 3.5 7.7 0.1 3.7 3 1 2 5 5 5 0 FliG N-terminal domain T4_baseplate PF12322.3 gi|282164475|ref|YP_003356860.1| - 0.14 11.3 0.8 0.49 9.6 0.2 2.1 2 0 0 2 2 2 0 T4 bacteriophage base plate protein SWIM PF04434.12 gi|282164476|ref|YP_003356861.1| - 4.3e-05 22.8 0.4 8.4e-05 21.9 0.3 1.4 1 0 0 1 1 1 1 SWIM zinc finger IMS_C PF11799.3 gi|282164476|ref|YP_003356861.1| - 0.03 14.2 0.1 0.059 13.3 0.0 1.5 1 0 0 1 1 1 0 impB/mucB/samB family C-terminal domain ERp29 PF07749.7 gi|282164476|ref|YP_003356861.1| - 0.16 12.6 2.1 1.5 9.5 1.4 2.5 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain TMF_TATA_bd PF12325.3 gi|282164476|ref|YP_003356861.1| - 0.21 11.3 1.6 1.5 8.5 0.4 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF2769 PF10967.3 gi|282164477|ref|YP_003356862.1| - 3.2e-18 65.7 11.6 3.7e-18 65.5 8.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) DUF4002 PF13164.1 gi|282164477|ref|YP_003356862.1| - 2.8 7.9 10.9 4.7 7.2 7.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4002) Radical_SAM PF04055.16 gi|282164478|ref|YP_003356863.1| - 2e-15 57.3 0.1 4.5e-15 56.2 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|282164478|ref|YP_003356863.1| - 2e-10 40.8 0.0 3.7e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|282164478|ref|YP_003356863.1| - 4.2e-09 36.4 0.0 8.9e-09 35.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain PAS_4 PF08448.5 gi|282164479|ref|YP_003356864.1| - 6.9e-48 161.2 0.3 3.2e-19 68.9 0.0 5.3 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.1 gi|282164479|ref|YP_003356864.1| - 3.6e-46 155.8 0.3 7.8e-12 45.4 0.0 5.3 5 0 0 5 5 5 5 PAS domain PAS_3 PF08447.6 gi|282164479|ref|YP_003356864.1| - 1.8e-41 140.1 2.0 6.5e-14 51.7 0.0 5.5 5 0 0 5 5 5 5 PAS fold PAS PF00989.19 gi|282164479|ref|YP_003356864.1| - 1.3e-40 137.6 0.0 6.3e-11 42.0 0.0 5.3 5 0 0 5 5 5 5 PAS fold HATPase_c PF02518.21 gi|282164479|ref|YP_003356864.1| - 7.5e-15 54.6 0.0 1.6e-14 53.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|282164479|ref|YP_003356864.1| - 9e-14 50.7 0.2 0.0028 17.4 0.0 4.7 5 0 0 5 5 5 3 PAS domain PAS_7 PF12860.2 gi|282164479|ref|YP_003356864.1| - 7.9e-05 22.6 0.3 0.29 11.1 0.0 5.0 5 1 0 5 5 5 1 PAS fold HATPase_c_2 PF13581.1 gi|282164479|ref|YP_003356864.1| - 0.00011 21.9 0.0 0.00045 19.9 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_6 PF08348.6 gi|282164479|ref|YP_003356864.1| - 0.038 13.5 0.0 14 5.2 0.0 3.5 3 0 0 3 3 3 0 YheO-like PAS domain HATPase_c_5 PF14501.1 gi|282164479|ref|YP_003356864.1| - 0.061 13.0 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 GHKL domain DUF2284 PF10050.4 gi|282164480|ref|YP_003356865.1| - 3.3e-51 173.1 0.0 4e-51 172.9 0.0 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) KGG PF10685.4 gi|282164481|ref|YP_003356866.1| - 2.6e-08 33.5 0.1 0.003 17.4 0.0 2.4 2 0 0 2 2 2 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282164481|ref|YP_003356866.1| - 0.00014 22.1 2.4 0.00014 22.1 1.7 1.1 1 0 0 1 1 1 1 Small hydrophilic plant seed protein SASP PF00269.15 gi|282164481|ref|YP_003356866.1| - 0.00081 19.1 0.9 0.053 13.3 0.1 2.0 2 0 0 2 2 2 2 Small, acid-soluble spore proteins, alpha/beta type MFS_1 PF07690.11 gi|282164482|ref|YP_003356867.1| - 2.2e-43 148.3 59.6 5.3e-39 133.9 33.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|282164482|ref|YP_003356867.1| - 1.1e-10 40.5 39.6 8.6e-07 27.6 11.3 2.7 1 1 2 3 3 3 2 MFS/sugar transport protein ATG22 PF11700.3 gi|282164482|ref|YP_003356867.1| - 3e-10 39.2 40.5 2.2e-07 29.7 8.4 2.1 1 1 1 2 2 2 2 Vacuole effluxer Atg22 like MFS_3 PF05977.8 gi|282164482|ref|YP_003356867.1| - 9.8e-09 33.8 20.7 3.2e-08 32.1 14.3 1.7 1 1 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|282164482|ref|YP_003356867.1| - 4.3e-07 28.8 29.7 0.00022 19.9 6.4 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter LacY_symp PF01306.14 gi|282164482|ref|YP_003356867.1| - 0.0055 15.3 28.1 0.01 14.4 7.5 2.4 2 1 0 2 2 2 2 LacY proton/sugar symporter Lig_chan PF00060.21 gi|282164482|ref|YP_003356867.1| - 1.1 8.9 0.0 1.1 8.9 0.0 3.2 4 1 0 4 4 4 0 Ligand-gated ion channel Rhodanese PF00581.15 gi|282164483|ref|YP_003356868.1| - 9.8e-22 77.4 0.0 1.1e-21 77.2 0.0 1.0 1 0 0 1 1 1 1 Rhodanese-like domain PHB_acc_N PF07879.6 gi|282164483|ref|YP_003356868.1| - 0.12 12.1 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 PHB/PHA accumulation regulator DNA-binding domain DNA_ligase_ZBD PF03119.11 gi|282164483|ref|YP_003356868.1| - 0.13 11.9 0.1 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF2769 PF10967.3 gi|282164484|ref|YP_003356869.1| - 2.9e-16 59.5 11.6 3.5e-16 59.2 8.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) zf-Paramyx-P PF13008.2 gi|282164484|ref|YP_003356869.1| - 0.46 9.7 8.7 0.55 9.4 0.7 2.3 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein FhuF_C PF11575.3 gi|282164484|ref|YP_003356869.1| - 3.1 7.5 11.9 0.67 9.6 0.6 3.4 3 0 0 3 3 3 0 FhuF 2Fe-2S C-terminal domain Radical_SAM PF04055.16 gi|282164485|ref|YP_003356870.1| - 8.4e-13 48.8 0.0 1.2e-12 48.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|282164485|ref|YP_003356870.1| - 2.9 7.3 5.5 35 3.7 3.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) DUF650 PF04894.7 gi|282164486|ref|YP_003356871.1| - 3.2e-96 321.9 0.0 4.1e-96 321.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|282164486|ref|YP_003356871.1| - 1.2e-37 127.9 0.0 2.3e-37 126.9 0.0 1.5 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Prenyltransf PF01255.14 gi|282164487|ref|YP_003356872.1| - 4.5e-74 248.3 0.0 5.8e-74 247.9 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF2551 PF10826.3 gi|282164488|ref|YP_003356873.1| - 2.1e-30 104.4 0.1 2.4e-30 104.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) DUF2672 PF10878.3 gi|282164488|ref|YP_003356873.1| - 0.046 13.4 0.2 0.23 11.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2672) Radical_SAM PF04055.16 gi|282164489|ref|YP_003356874.1| - 4.2e-10 40.0 0.1 4.8e-08 33.3 0.0 2.7 1 1 2 3 3 3 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|282164489|ref|YP_003356874.1| - 5.5e-06 26.4 0.0 1.2e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|282164489|ref|YP_003356874.1| - 3.8e-05 23.8 0.0 7e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF3834 PF12916.2 gi|282164490|ref|YP_003356875.1| - 0.087 11.8 0.1 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) PNP_UDP_1 PF01048.15 gi|282164491|ref|YP_003356876.1| - 4.5e-42 143.6 0.0 5.3e-42 143.3 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF3853 PF12964.2 gi|282164491|ref|YP_003356876.1| - 0.06 13.1 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3853) Pribosyltran PF00156.22 gi|282164492|ref|YP_003356877.1| - 3.6e-24 84.8 0.0 4.6e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|282164492|ref|YP_003356877.1| - 0.087 12.0 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase SBP_bac_5 PF00496.17 gi|282164493|ref|YP_003356878.1| - 2.6e-76 256.8 0.7 3.7e-76 256.3 0.1 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle CarboxypepD_reg PF13620.1 gi|282164494|ref|YP_003356879.1| - 3.5e-08 33.3 6.4 1.1e-07 31.8 4.4 1.8 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282164494|ref|YP_003356879.1| - 0.00015 21.7 0.2 0.00026 20.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) DUF4366 PF14283.1 gi|282164494|ref|YP_003356879.1| - 0.026 13.9 0.4 0.19 11.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) Mucin PF01456.12 gi|282164494|ref|YP_003356879.1| - 0.047 13.4 18.0 0.091 12.5 12.5 1.6 1 1 0 1 1 1 0 Mucin-like glycoprotein HCV_core PF01542.13 gi|282164494|ref|YP_003356879.1| - 0.064 13.6 1.0 0.12 12.7 0.0 2.0 2 1 0 2 2 2 0 Hepatitis C virus core protein Herpes_gE PF02480.11 gi|282164494|ref|YP_003356879.1| - 0.067 11.4 2.1 0.088 11.0 1.5 1.3 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E Alpha_GJ PF03229.8 gi|282164494|ref|YP_003356879.1| - 0.14 12.4 11.5 0.11 12.8 7.1 1.5 1 1 0 1 1 1 0 Alphavirus glycoprotein J PLRV_ORF5 PF01690.12 gi|282164494|ref|YP_003356879.1| - 3.2 6.8 20.0 5.1 6.1 13.9 1.3 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein MGC-24 PF05283.6 gi|282164494|ref|YP_003356879.1| - 3.9 7.2 14.6 5.4 6.7 10.1 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) Calx-beta PF03160.9 gi|282164495|ref|YP_003356880.1| - 2.3e-31 107.7 4.5 8.5e-16 57.7 0.2 2.8 3 0 0 3 3 3 2 Calx-beta domain CarboxypepD_reg PF13620.1 gi|282164495|ref|YP_003356880.1| - 7.8e-07 29.0 13.0 7.2e-06 25.9 2.6 3.7 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282164495|ref|YP_003356880.1| - 0.00011 22.1 2.9 0.0012 18.8 0.2 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4480) DUF1491 PF07372.7 gi|282164495|ref|YP_003356880.1| - 0.0019 18.0 0.1 0.0041 17.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1491) Peptidase_M56 PF05569.6 gi|282164495|ref|YP_003356880.1| - 0.27 10.1 1.7 2.3 7.1 0.0 2.3 2 0 0 2 2 2 0 BlaR1 peptidase M56 DUF211 PF02680.9 gi|282164496|ref|YP_003356881.1| - 4.8e-39 132.0 3.7 5.3e-39 131.9 2.5 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.21 gi|282164496|ref|YP_003356881.1| - 0.28 11.3 1.3 0.53 10.4 0.9 1.6 1 1 0 1 1 1 0 Heavy-metal-associated domain VIT1 PF01988.14 gi|282164497|ref|YP_003356882.1| - 3.6e-28 98.5 19.8 1.5e-26 93.2 13.8 2.0 1 1 0 1 1 1 1 VIT family DUF1514 PF07438.6 gi|282164497|ref|YP_003356882.1| - 3 7.8 4.9 0.59 10.0 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1514) Transposase_mut PF00872.13 gi|282164498|ref|YP_003356883.1| - 1.4e-106 356.2 0.1 1.7e-106 356.0 0.1 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|282164498|ref|YP_003356883.1| - 5.2e-17 61.7 0.0 1.4e-16 60.3 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS240 PF13610.1 gi|282164498|ref|YP_003356883.1| - 2e-09 37.5 0.1 1.9e-06 27.9 0.1 2.7 1 1 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|282164498|ref|YP_003356883.1| - 1.4e-06 27.7 0.1 2.2e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_ISL3 PF01610.12 gi|282164498|ref|YP_003356883.1| - 0.00033 20.3 0.1 0.00057 19.5 0.1 1.5 1 0 0 1 1 1 1 Transposase HTH_32 PF13565.1 gi|282164498|ref|YP_003356883.1| - 0.047 14.4 0.3 0.2 12.4 0.0 2.2 2 1 0 2 2 2 0 Homeodomain-like domain Transport_MerF PF11431.3 gi|282164499|ref|YP_003356884.1| - 0.097 12.3 0.7 0.097 12.3 0.5 3.0 2 1 0 2 2 2 0 Membrane transport protein MerF DUF4013 PF13197.1 gi|282164499|ref|YP_003356884.1| - 0.71 9.1 30.9 1.7 7.9 9.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) DUF373 PF04123.8 gi|282164499|ref|YP_003356884.1| - 1.8 7.5 11.7 2.8 6.8 8.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF1129 PF06570.6 gi|282164499|ref|YP_003356884.1| - 2.9 7.1 11.4 57 2.9 8.2 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) Prominin PF05478.6 gi|282164499|ref|YP_003356884.1| - 3.2 5.1 8.8 4 4.8 6.1 1.2 1 0 0 1 1 1 0 Prominin Rep_fac_C PF08542.6 gi|282164500|ref|YP_003356885.1| - 3.9e-22 78.0 0.0 1.3e-21 76.3 0.0 1.9 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.24 gi|282164500|ref|YP_003356885.1| - 7e-18 65.1 0.0 2.2e-17 63.4 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|282164500|ref|YP_003356885.1| - 5.8e-15 55.3 0.0 6.3e-13 48.7 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|282164500|ref|YP_003356885.1| - 1.7e-11 43.5 0.0 2.7e-10 39.7 0.0 2.6 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|282164500|ref|YP_003356885.1| - 9.8e-08 31.1 0.0 2.4e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|282164500|ref|YP_003356885.1| - 2.5e-06 27.4 0.0 7.3e-06 25.9 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|282164500|ref|YP_003356885.1| - 2.6e-06 27.5 0.1 0.00065 19.7 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|282164500|ref|YP_003356885.1| - 7.1e-06 26.1 0.1 0.2 11.7 0.0 2.8 2 1 1 3 3 3 2 AAA domain Sigma54_activ_2 PF14532.1 gi|282164500|ref|YP_003356885.1| - 1.2e-05 25.3 0.0 2.4e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_3 PF07726.6 gi|282164500|ref|YP_003356885.1| - 1.4e-05 24.7 0.0 2.7e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|282164500|ref|YP_003356885.1| - 3.1e-05 23.2 0.0 0.0063 15.7 0.0 2.4 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI TIP49 PF06068.8 gi|282164500|ref|YP_003356885.1| - 0.0001 21.1 0.0 0.0011 17.8 0.0 2.4 2 1 0 2 2 2 1 TIP49 C-terminus AAA_18 PF13238.1 gi|282164500|ref|YP_003356885.1| - 0.00088 19.5 0.0 0.0068 16.7 0.0 2.3 3 0 0 3 3 2 1 AAA domain IstB_IS21 PF01695.12 gi|282164500|ref|YP_003356885.1| - 0.001 18.5 0.0 0.0021 17.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|282164500|ref|YP_003356885.1| - 0.0016 17.9 0.0 0.0051 16.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|282164500|ref|YP_003356885.1| - 0.0016 18.3 0.0 0.017 15.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) DNA_pol3_delta PF06144.8 gi|282164500|ref|YP_003356885.1| - 0.0021 17.6 0.0 0.0038 16.7 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit ResIII PF04851.10 gi|282164500|ref|YP_003356885.1| - 0.0027 17.5 0.0 0.0064 16.3 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_5 PF07728.9 gi|282164500|ref|YP_003356885.1| - 0.0042 16.8 0.0 0.031 13.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|282164500|ref|YP_003356885.1| - 0.0048 16.3 0.0 1.9 7.9 0.0 2.6 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_10 PF12846.2 gi|282164500|ref|YP_003356885.1| - 0.0089 15.5 1.6 1.5 8.2 0.1 2.5 2 1 1 3 3 3 1 AAA-like domain AAA_17 PF13207.1 gi|282164500|ref|YP_003356885.1| - 0.013 16.3 0.0 0.029 15.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|282164500|ref|YP_003356885.1| - 0.023 14.8 0.0 0.058 13.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.1 gi|282164500|ref|YP_003356885.1| - 0.029 14.1 0.0 0.08 12.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain PhoH PF02562.11 gi|282164500|ref|YP_003356885.1| - 0.049 12.8 0.2 1 8.5 0.0 2.4 2 1 0 3 3 3 0 PhoH-like protein ArgK PF03308.11 gi|282164500|ref|YP_003356885.1| - 0.071 11.8 0.0 6 5.5 0.0 2.3 1 1 1 2 2 2 0 ArgK protein DUF2075 PF09848.4 gi|282164500|ref|YP_003356885.1| - 0.078 11.9 0.0 0.21 10.5 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SNF2_N PF00176.18 gi|282164500|ref|YP_003356885.1| - 0.11 11.2 0.0 1.1 8.0 0.0 2.0 1 1 0 2 2 2 0 SNF2 family N-terminal domain DUF3400 PF11880.3 gi|282164500|ref|YP_003356885.1| - 0.13 11.4 0.8 0.73 9.0 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3400) DUF2240 PF09999.4 gi|282164501|ref|YP_003356886.1| - 1.2e-40 138.2 0.1 1.4e-40 138.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Transglut_core PF01841.14 gi|282164502|ref|YP_003356887.1| - 5.1e-21 74.9 0.0 9.4e-21 74.1 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily CarboxypepD_reg PF13620.1 gi|282164502|ref|YP_003356887.1| - 1.1e-08 35.0 1.3 1.1e-08 35.0 0.9 2.2 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282164502|ref|YP_003356887.1| - 8.9e-08 32.0 1.6 1.3e-07 31.5 0.4 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) Transglut_core3 PF13471.1 gi|282164502|ref|YP_003356887.1| - 0.012 15.3 0.0 0.031 14.0 0.0 1.6 1 0 0 1 1 1 0 Transglutaminase-like superfamily PEGA PF08308.6 gi|282164502|ref|YP_003356887.1| - 0.02 14.6 0.0 0.063 13.0 0.0 1.8 1 0 0 1 1 1 0 PEGA domain DUF3869 PF12985.2 gi|282164502|ref|YP_003356887.1| - 0.039 14.3 3.1 0.055 13.8 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3869) Rad4 PF03835.10 gi|282164502|ref|YP_003356887.1| - 0.16 11.3 0.0 0.33 10.3 0.0 1.5 1 0 0 1 1 1 0 Rad4 transglutaminase-like domain Band_7 PF01145.20 gi|282164505|ref|YP_003356890.1| - 1.5e-31 109.7 0.7 1.5e-31 109.7 0.5 1.5 2 0 0 2 2 2 1 SPFH domain / Band 7 family NfeD PF01957.13 gi|282164506|ref|YP_003356891.1| - 2.2e-19 70.0 5.2 2.5e-19 69.8 3.6 1.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF1449 PF07290.6 gi|282164506|ref|YP_003356891.1| - 0.009 15.3 4.3 0.011 15.0 3.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1449) DUF2206 PF09971.4 gi|282164506|ref|YP_003356891.1| - 0.14 10.9 1.2 0.19 10.4 0.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) CopD PF05425.8 gi|282164506|ref|YP_003356891.1| - 0.79 9.9 10.9 2.7 8.2 7.6 1.8 1 1 0 1 1 1 0 Copper resistance protein D FxsA PF04186.8 gi|282164506|ref|YP_003356891.1| - 1.2 8.8 14.8 0.091 12.3 6.2 2.0 1 1 1 2 2 2 0 FxsA cytoplasmic membrane protein Cas_Cas4 PF01930.12 gi|282164507|ref|YP_003356892.1| - 2.2e-07 30.9 0.0 0.0002 21.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function DUF83 Nitro_FeMo-Co PF02579.12 gi|282164509|ref|YP_003356894.1| - 3.1e-17 62.4 0.1 3.7e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Radical_SAM PF04055.16 gi|282164510|ref|YP_003356895.1| - 2.6e-17 63.4 0.3 5.3e-17 62.4 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|282164510|ref|YP_003356895.1| - 5.1e-07 29.9 1.0 1.4e-06 28.5 0.7 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|282164510|ref|YP_003356895.1| - 1.8e-06 28.1 0.2 4.2e-06 26.9 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|282164510|ref|YP_003356895.1| - 1.5e-05 24.9 0.0 3.9e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_M9_N PF08453.5 gi|282164510|ref|YP_003356895.1| - 0.044 13.1 0.0 0.09 12.1 0.0 1.5 1 0 0 1 1 1 0 Peptidase family M9 N-terminal Aminotran_1_2 PF00155.16 gi|282164511|ref|YP_003356896.1| - 1e-60 205.6 0.0 1.1e-60 205.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|282164511|ref|YP_003356896.1| - 2e-11 43.5 0.0 2.8e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|282164511|ref|YP_003356896.1| - 2.5e-09 35.9 0.0 3.8e-09 35.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|282164511|ref|YP_003356896.1| - 0.0014 17.4 0.0 0.0023 16.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Acetyltransf_1 PF00583.19 gi|282164512|ref|YP_003356897.1| - 6.5e-11 42.1 0.0 4e-10 39.5 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|282164512|ref|YP_003356897.1| - 5.5e-07 29.4 0.0 7.2e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|282164512|ref|YP_003356897.1| - 8.7e-07 29.0 0.0 1.6e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|282164512|ref|YP_003356897.1| - 2.8e-06 27.3 0.2 4.9e-06 26.5 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|282164512|ref|YP_003356897.1| - 2.8e-05 24.2 0.0 3.6e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|282164512|ref|YP_003356897.1| - 0.079 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Nitroreductase PF00881.19 gi|282164513|ref|YP_003356898.1| - 1.2e-36 126.0 0.0 1.5e-36 125.7 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|282164513|ref|YP_003356898.1| - 8.3e-05 21.8 0.1 0.0087 15.2 0.0 2.8 2 1 0 2 2 2 2 Putative TM nitroreductase Sugar_tr PF00083.19 gi|282164515|ref|YP_003356900.1| - 0.066 11.7 0.4 0.072 11.6 0.2 1.0 1 0 0 1 1 1 0 Sugar (and other) transporter ABC2_membrane_2 PF12679.2 gi|282164516|ref|YP_003356901.1| - 1.5e-17 63.3 25.3 2.8e-17 62.4 17.3 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|282164516|ref|YP_003356901.1| - 1.8e-11 43.6 26.0 1.8e-11 43.6 18.0 2.2 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282164516|ref|YP_003356901.1| - 2.6e-08 33.3 25.4 2.6e-08 33.3 17.6 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein zf-DHHC PF01529.15 gi|282164516|ref|YP_003356901.1| - 8.1 5.8 8.7 4.2e+02 0.2 6.0 2.4 1 1 0 1 1 1 0 DHHC palmitoyltransferase ABC_tran PF00005.22 gi|282164517|ref|YP_003356902.1| - 3.8e-35 121.1 0.0 5.3e-35 120.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282164517|ref|YP_003356902.1| - 4.2e-14 53.2 0.0 3.2e-09 37.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|282164517|ref|YP_003356902.1| - 0.0007 18.1 0.0 0.21 9.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|282164517|ref|YP_003356902.1| - 0.0068 16.6 0.2 0.08 13.1 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|282164517|ref|YP_003356902.1| - 0.011 16.0 0.1 0.017 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|282164517|ref|YP_003356902.1| - 0.016 14.6 0.0 0.027 13.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|282164517|ref|YP_003356902.1| - 0.025 14.1 0.0 0.048 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|282164517|ref|YP_003356902.1| - 0.08 12.8 0.0 0.17 11.8 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|282164517|ref|YP_003356902.1| - 0.082 12.8 0.0 0.31 11.0 0.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|282164517|ref|YP_003356902.1| - 0.093 12.1 0.0 2.4 7.4 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|282164517|ref|YP_003356902.1| - 0.16 11.1 0.0 0.28 10.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 TraB PF01963.12 gi|282164518|ref|YP_003356903.1| - 1.9e-07 30.7 0.0 0.003 17.0 0.0 2.1 2 0 0 2 2 2 2 TraB family Ribosomal_S8e PF01201.17 gi|282164519|ref|YP_003356904.1| - 1.9e-32 112.1 6.1 2.1e-32 112.0 4.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e FliL PF03748.9 gi|282164519|ref|YP_003356904.1| - 0.14 12.2 0.2 0.38 10.7 0.1 1.8 1 1 1 2 2 2 0 Flagellar basal body-associated protein FliL AhpC-TSA PF00578.16 gi|282164520|ref|YP_003356905.1| - 7.9e-27 93.3 0.0 9.1e-27 93.2 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|282164520|ref|YP_003356905.1| - 4.1e-16 58.8 0.0 4.8e-16 58.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|282164520|ref|YP_003356905.1| - 0.071 13.0 0.0 0.34 10.8 0.0 1.7 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme AhpC-TSA PF00578.16 gi|282164521|ref|YP_003356906.1| - 1.7e-16 60.0 0.0 2.4e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|282164521|ref|YP_003356906.1| - 3.5e-09 36.3 0.0 4.6e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Redoxin DUF531 PF04407.7 gi|282164522|ref|YP_003356907.1| - 2.7e-83 278.0 0.1 3.1e-83 277.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.1 gi|282164522|ref|YP_003356907.1| - 2.8e-05 23.3 0.0 4e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP Methyltrn_RNA_4 PF09936.4 gi|282164522|ref|YP_003356907.1| - 0.0018 17.7 0.0 0.0027 17.2 0.0 1.3 1 0 0 1 1 1 1 SAM-dependent RNA methyltransferase tRNA-synt_2b PF00587.20 gi|282164523|ref|YP_003356908.1| - 1.4e-22 80.1 0.0 3.5e-22 78.7 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|282164523|ref|YP_003356908.1| - 2.6e-20 72.1 0.0 4.6e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|282164523|ref|YP_003356908.1| - 7.8e-14 51.3 0.1 1.8e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Peptidase_M29 PF02073.10 gi|282164524|ref|YP_003356909.1| - 1.2e-26 93.4 0.0 1.9e-26 92.7 0.0 1.3 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) PAS_9 PF13426.1 gi|282164526|ref|YP_003356911.1| - 8.8e-51 170.6 0.1 4.6e-16 59.0 0.0 4.7 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|282164526|ref|YP_003356911.1| - 1.8e-44 149.7 2.3 7.4e-13 48.4 0.0 5.1 6 0 0 6 6 5 4 PAS fold PAS_4 PF08448.5 gi|282164526|ref|YP_003356911.1| - 4.1e-44 149.1 0.8 5e-14 52.2 0.0 4.7 4 1 1 5 5 5 3 PAS fold PAS PF00989.19 gi|282164526|ref|YP_003356911.1| - 1.4e-40 137.5 0.1 3.2e-14 52.6 0.0 4.7 4 1 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|282164526|ref|YP_003356911.1| - 3.1e-20 71.9 0.0 6.9e-20 70.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|282164526|ref|YP_003356911.1| - 3.1e-12 45.8 0.0 6.7e-05 22.6 0.0 4.5 4 0 0 4 4 4 2 PAS domain HATPase_c_2 PF13581.1 gi|282164526|ref|YP_003356911.1| - 8.4e-05 22.3 0.0 0.00022 21.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|282164526|ref|YP_003356911.1| - 0.00014 21.7 0.0 5.6 6.9 0.0 3.8 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.1 gi|282164526|ref|YP_003356911.1| - 0.00081 19.0 0.0 0.0022 17.6 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_6 PF08348.6 gi|282164526|ref|YP_003356911.1| - 0.0096 15.4 0.0 1.2 8.7 0.0 2.8 2 0 0 2 2 2 1 YheO-like PAS domain LMSTEN PF07988.7 gi|282164526|ref|YP_003356911.1| - 0.064 12.5 0.4 0.15 11.3 0.3 1.6 1 0 0 1 1 1 0 LMSTEN motif HisKA PF00512.20 gi|282164526|ref|YP_003356911.1| - 0.073 13.0 1.9 2.1 8.4 0.0 3.1 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|282164526|ref|YP_003356911.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|282164528|ref|YP_003356913.1| - 6e-24 83.9 0.0 7.9e-10 38.7 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|282164528|ref|YP_003356913.1| - 7.9e-23 80.8 0.0 8.1e-08 32.5 0.0 3.6 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|282164528|ref|YP_003356913.1| - 4.4e-20 71.4 0.0 1.1e-19 70.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|282164528|ref|YP_003356913.1| - 4.8e-20 71.4 0.0 3.8e-09 36.3 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|282164528|ref|YP_003356913.1| - 1.7e-16 60.1 0.0 4.5e-05 23.4 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|282164528|ref|YP_003356913.1| - 1.5e-11 43.7 0.0 0.0001 22.0 0.0 3.6 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.1 gi|282164528|ref|YP_003356913.1| - 2.1e-05 24.1 0.0 5.5e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_11 PF14598.1 gi|282164528|ref|YP_003356913.1| - 7.5e-05 22.6 0.0 0.022 14.6 0.0 2.7 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|282164528|ref|YP_003356913.1| - 0.00037 20.2 0.0 0.00083 19.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF1214 PF06742.6 gi|282164529|ref|YP_003356914.1| - 5.3e-30 103.9 0.6 1e-29 103.0 0.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1214) DUF2189 PF09955.4 gi|282164529|ref|YP_003356914.1| - 0.0022 17.9 2.2 0.0023 17.8 0.8 1.6 1 1 0 1 1 1 1 Predicted integral membrane protein (DUF2189) Yip1 PF04893.12 gi|282164529|ref|YP_003356914.1| - 0.016 14.6 2.8 0.016 14.6 1.9 2.0 1 1 0 2 2 2 0 Yip1 domain UPF0154 PF03672.8 gi|282164529|ref|YP_003356914.1| - 0.071 12.7 0.1 0.071 12.7 0.1 2.5 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0154) Neurensin PF14927.1 gi|282164529|ref|YP_003356914.1| - 0.094 12.1 2.9 0.17 11.2 2.0 1.4 1 1 0 1 1 1 0 Neurensin Fig1 PF12351.3 gi|282164529|ref|YP_003356914.1| - 0.27 11.0 1.8 0.39 10.5 1.3 1.2 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 DUF1469 PF07332.6 gi|282164529|ref|YP_003356914.1| - 0.31 10.7 4.1 0.58 9.8 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF4118 PF13493.1 gi|282164529|ref|YP_003356914.1| - 0.53 10.4 6.5 1.1 9.4 1.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4118) Tetraspannin PF00335.15 gi|282164529|ref|YP_003356914.1| - 1.4 8.0 8.1 5.7 6.1 5.6 1.8 1 1 0 1 1 1 0 Tetraspanin family FtsX PF02687.16 gi|282164529|ref|YP_003356914.1| - 4.5 7.0 12.2 1.5 8.5 0.7 2.3 2 0 0 2 2 2 0 FtsX-like permease family CopD PF05425.8 gi|282164529|ref|YP_003356914.1| - 4.6 7.5 7.9 7.1 6.8 4.9 1.7 1 1 0 1 1 1 0 Copper resistance protein D DUF981 PF06168.6 gi|282164529|ref|YP_003356914.1| - 5.8 6.6 10.6 0.92 9.2 2.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF981) Gly-zipper_Omp PF13488.1 gi|282164529|ref|YP_003356914.1| - 8.2 6.1 11.0 7.6 6.2 1.4 3.1 3 0 0 3 3 3 0 Glycine zipper Rick_17kDa_Anti PF05433.10 gi|282164529|ref|YP_003356914.1| - 9.2 6.0 13.2 1.1 8.9 0.5 3.2 3 0 0 3 3 3 0 Glycine zipper 2TM domain DUF1254 PF06863.7 gi|282164530|ref|YP_003356915.1| - 2.3e-31 108.2 0.3 2.9e-31 107.9 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1254) ABC_tran PF00005.22 gi|282164531|ref|YP_003356916.1| - 5.8e-32 110.8 0.0 7.5e-32 110.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282164531|ref|YP_003356916.1| - 4.2e-10 40.0 0.2 4e-06 26.9 0.4 2.3 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282164531|ref|YP_003356916.1| - 1.5e-07 30.8 0.0 7.1e-05 22.0 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|282164531|ref|YP_003356916.1| - 3.8e-05 23.1 0.3 6.9e-05 22.3 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|282164531|ref|YP_003356916.1| - 6.1e-05 22.3 0.1 0.00087 18.5 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|282164531|ref|YP_003356916.1| - 0.00017 21.9 1.2 0.00037 20.8 0.9 1.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|282164531|ref|YP_003356916.1| - 0.0012 19.0 0.0 0.0056 16.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|282164531|ref|YP_003356916.1| - 0.007 15.5 0.1 0.012 14.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|282164531|ref|YP_003356916.1| - 0.0099 15.8 0.4 0.02 14.8 0.3 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|282164531|ref|YP_003356916.1| - 0.018 15.8 0.0 0.033 15.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|282164531|ref|YP_003356916.1| - 0.029 13.3 0.0 0.039 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MutS_V PF00488.16 gi|282164531|ref|YP_003356916.1| - 0.037 13.4 0.0 0.058 12.7 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_30 PF13604.1 gi|282164531|ref|YP_003356916.1| - 0.043 13.4 0.0 0.078 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|282164531|ref|YP_003356916.1| - 0.046 13.1 0.0 0.076 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain ABC_ATPase PF09818.4 gi|282164531|ref|YP_003356916.1| - 0.055 12.0 0.1 0.15 10.5 0.2 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|282164531|ref|YP_003356916.1| - 0.064 13.4 0.0 0.72 10.0 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|282164531|ref|YP_003356916.1| - 0.086 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.1 gi|282164531|ref|YP_003356916.1| - 0.093 11.1 0.0 0.12 10.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|282164531|ref|YP_003356916.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|282164531|ref|YP_003356916.1| - 0.12 11.2 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|282164531|ref|YP_003356916.1| - 0.13 11.2 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin DUF2813 PF11398.3 gi|282164531|ref|YP_003356916.1| - 0.16 11.0 0.0 0.23 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) BPD_transp_1 PF00528.17 gi|282164532|ref|YP_003356917.1| - 1.2e-15 57.5 13.1 1.2e-15 57.5 9.1 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component IncA PF04156.9 gi|282164532|ref|YP_003356917.1| - 9.4 5.7 7.4 12 5.4 0.7 2.9 3 0 0 3 3 3 0 IncA protein SBP_bac_11 PF13531.1 gi|282164533|ref|YP_003356918.1| - 6.7e-35 120.7 0.0 7.5e-35 120.6 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|282164533|ref|YP_003356918.1| - 2.3e-05 24.2 2.2 0.0053 16.5 1.5 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|282164533|ref|YP_003356918.1| - 9.3e-05 21.4 0.0 0.00018 20.5 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain OpuAC PF04069.7 gi|282164533|ref|YP_003356918.1| - 0.0023 17.3 0.1 0.0032 16.8 0.1 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_3 PF00497.15 gi|282164533|ref|YP_003356918.1| - 0.003 16.8 0.1 0.0043 16.3 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 SBP_bac_8 PF13416.1 gi|282164533|ref|YP_003356918.1| - 0.015 15.0 0.6 0.097 12.3 0.4 2.0 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|282164533|ref|YP_003356918.1| - 0.023 14.1 0.1 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein HxlR PF01638.12 gi|282164534|ref|YP_003356919.1| - 2.4e-23 81.5 0.0 3.2e-23 81.1 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|282164534|ref|YP_003356919.1| - 0.0012 18.6 0.0 0.0017 18.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Jnk-SapK_ap_N PF09744.4 gi|282164535|ref|YP_003356920.1| - 0.016 15.1 0.4 0.017 15.1 0.3 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Sipho_Gp157 PF05565.6 gi|282164535|ref|YP_003356920.1| - 0.027 14.0 0.3 0.027 14.0 0.2 1.0 1 0 0 1 1 1 0 Siphovirus Gp157 DUF2680 PF10925.3 gi|282164535|ref|YP_003356920.1| - 0.085 12.7 2.6 0.1 12.4 1.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2680) Pdase_C33_assoc PF14756.1 gi|282164535|ref|YP_003356920.1| - 0.45 10.2 3.5 0.44 10.2 2.4 1.1 1 0 0 1 1 1 0 Peptidase_C33-associated domain ABC_tran PF00005.22 gi|282164536|ref|YP_003356921.1| - 3.4e-22 79.2 0.0 4.2e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.1 gi|282164536|ref|YP_003356921.1| - 0.0016 18.7 0.1 0.0031 17.8 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|282164536|ref|YP_003356921.1| - 0.0075 15.7 0.0 0.015 14.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|282164536|ref|YP_003356921.1| - 0.022 14.7 0.0 0.051 13.5 0.0 1.5 1 1 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|282164536|ref|YP_003356921.1| - 0.025 14.0 0.1 0.032 13.6 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|282164536|ref|YP_003356921.1| - 0.057 13.1 0.0 0.096 12.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|282164536|ref|YP_003356921.1| - 0.065 12.8 0.1 0.086 12.4 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|282164536|ref|YP_003356921.1| - 0.11 11.9 0.1 0.17 11.2 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain DUF4162 PF13732.1 gi|282164537|ref|YP_003356922.1| - 9.7e-05 22.8 0.1 0.00072 20.0 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_21 PF13304.1 gi|282164537|ref|YP_003356922.1| - 0.00055 19.9 0.0 0.001 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC2_membrane PF01061.19 gi|282164538|ref|YP_003356923.1| - 8.9e-22 77.2 21.2 8.9e-22 77.2 14.7 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|282164538|ref|YP_003356923.1| - 3.9e-13 49.1 27.6 3.9e-13 49.1 19.1 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|282164538|ref|YP_003356923.1| - 2.7e-05 23.1 19.5 0.00011 21.2 13.5 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein Cupin_2 PF07883.6 gi|282164539|ref|YP_003356924.1| - 6.8e-10 38.3 0.0 7.9e-10 38.1 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|282164539|ref|YP_003356924.1| - 7.9e-06 25.6 0.0 9.1e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.1 gi|282164539|ref|YP_003356924.1| - 0.0066 16.0 0.0 0.008 15.7 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain KduI PF04962.7 gi|282164539|ref|YP_003356924.1| - 0.015 14.4 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 KduI/IolB family Pirin_C PF05726.8 gi|282164539|ref|YP_003356924.1| - 0.084 12.9 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Y_Y_Y PF07495.8 gi|282164540|ref|YP_003356925.1| - 0.0076 15.9 0.3 0.019 14.7 0.1 1.7 2 0 0 2 2 2 1 Y_Y_Y domain Cna_B PF05738.8 gi|282164540|ref|YP_003356925.1| - 0.022 14.5 1.3 0.037 13.7 0.3 1.8 2 0 0 2 2 2 0 Cna protein B-type domain DUF2189 PF09955.4 gi|282164540|ref|YP_003356925.1| - 0.22 11.4 2.0 0.24 11.3 0.7 1.6 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2189) TBP PF00352.16 gi|282164541|ref|YP_003356926.1| - 1.4e-57 190.9 0.0 7.8e-31 105.2 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|282164541|ref|YP_003356926.1| - 0.00042 20.3 0.0 1.3 9.0 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) MttA_Hcf106 PF02416.11 gi|282164541|ref|YP_003356926.1| - 0.18 10.9 1.3 8.9 5.5 0.5 2.4 2 0 0 2 2 2 0 mttA/Hcf106 family PadR PF03551.9 gi|282164542|ref|YP_003356927.1| - 2.2e-21 75.3 0.1 3.2e-21 74.8 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|282164542|ref|YP_003356927.1| - 7.8e-05 22.6 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|282164542|ref|YP_003356927.1| - 0.0019 17.8 0.1 0.0022 17.5 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF505 PF04458.7 gi|282164542|ref|YP_003356927.1| - 0.005 15.0 0.0 0.0052 14.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) Peptidase_M50 PF02163.17 gi|282164543|ref|YP_003356928.1| - 0.49 9.3 2.6 1.9 7.3 1.8 2.1 1 1 0 1 1 1 0 Peptidase family M50 DUF3671 PF12420.3 gi|282164543|ref|YP_003356928.1| - 7.7 6.5 7.1 1.9 8.5 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function TIR_2 PF13676.1 gi|282164545|ref|YP_003356930.1| - 8.2e-20 70.8 0.0 2.2e-19 69.4 0.0 1.8 1 0 0 1 1 1 1 TIR domain TIR PF01582.15 gi|282164545|ref|YP_003356930.1| - 1.7e-06 27.5 0.0 3.8e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 TIR domain DUF1863 PF08937.6 gi|282164545|ref|YP_003356930.1| - 0.0019 18.2 0.1 0.38 10.8 0.0 2.5 2 0 0 2 2 2 1 MTH538 TIR-like domain (DUF1863) Herpes_UL45 PF05473.7 gi|282164545|ref|YP_003356930.1| - 0.14 11.5 0.7 3.4 7.0 0.2 2.3 2 0 0 2 2 2 0 UL45 protein DUF4203 PF13886.1 gi|282164545|ref|YP_003356930.1| - 1.4 8.3 18.6 0.054 12.9 7.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4203) Herpes_UL43 PF05072.8 gi|282164545|ref|YP_003356930.1| - 2.1 7.0 7.2 3.7 6.1 4.6 1.6 1 1 1 2 2 2 0 Herpesvirus UL43 protein PQQ_2 PF13360.1 gi|282164546|ref|YP_003356931.1| - 3.7e-05 23.3 1.2 0.086 12.2 0.1 2.3 2 0 0 2 2 2 2 PQQ-like domain Acyl-CoA_dh_M PF02770.14 gi|282164546|ref|YP_003356931.1| - 0.009 15.5 0.5 0.11 11.9 0.1 3.0 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, middle domain DUF4357 PF14267.1 gi|282164546|ref|YP_003356931.1| - 0.018 14.5 1.3 9.2 5.9 0.0 3.9 5 0 0 5 5 5 0 Domain of unknown function (DUF4357) DUF2064 PF09837.4 gi|282164546|ref|YP_003356931.1| - 0.18 11.3 3.7 21 4.7 0.0 3.8 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2064) PQQ_3 PF13570.1 gi|282164546|ref|YP_003356931.1| - 2.6 8.4 11.7 11 6.4 0.2 4.9 4 0 0 4 4 4 0 PQQ-like domain Metallophos_2 PF12850.2 gi|282164547|ref|YP_003356932.1| - 1.1e-33 116.2 0.1 1.4e-33 115.9 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|282164547|ref|YP_003356932.1| - 5.2e-06 25.9 3.1 1.4e-05 24.6 2.2 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|282164548|ref|YP_003356933.1| - 1.4e-28 99.7 0.0 1.9e-28 99.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|282164548|ref|YP_003356933.1| - 1.6e-17 63.5 1.1 4.4e-17 62.1 0.8 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.6 gi|282164548|ref|YP_003356933.1| - 0.008 14.2 0.1 0.78 7.6 0.0 2.0 1 1 1 2 2 2 2 Firmicute fructose-1,6-bisphosphatase EHN PF06441.7 gi|282164548|ref|YP_003356933.1| - 0.14 12.1 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Epoxide hydrolase N terminus PhoU PF01895.14 gi|282164549|ref|YP_003356934.1| - 1.9e-31 108.3 3.5 5.9e-16 58.6 0.1 2.1 2 0 0 2 2 2 2 PhoU domain DUF325 PF03804.8 gi|282164549|ref|YP_003356934.1| - 0.11 12.2 0.0 2.8 7.7 0.0 2.6 3 0 0 3 3 3 0 Viral domain of unknown function ABC_tran PF00005.22 gi|282164550|ref|YP_003356935.1| - 1.7e-32 112.6 0.0 2.6e-32 111.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282164550|ref|YP_003356935.1| - 3.8e-15 56.6 0.0 1.6e-07 31.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|282164550|ref|YP_003356935.1| - 5.7e-09 35.5 0.0 0.00024 20.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|282164550|ref|YP_003356935.1| - 9e-07 28.2 0.3 0.0033 16.5 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|282164550|ref|YP_003356935.1| - 1.3e-05 25.5 0.3 1.6e-05 25.3 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|282164550|ref|YP_003356935.1| - 4.6e-05 23.5 0.2 0.00039 20.5 0.1 2.4 1 1 1 2 2 2 1 AAA domain DUF258 PF03193.11 gi|282164550|ref|YP_003356935.1| - 0.0003 20.0 0.0 0.0011 18.2 0.0 1.9 3 0 0 3 3 3 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|282164550|ref|YP_003356935.1| - 0.00031 20.2 0.2 0.029 13.7 0.0 2.2 1 1 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|282164550|ref|YP_003356935.1| - 0.00057 19.3 0.0 0.0012 18.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|282164550|ref|YP_003356935.1| - 0.00063 19.5 0.1 0.15 11.7 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|282164550|ref|YP_003356935.1| - 0.00086 19.3 0.0 0.014 15.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|282164550|ref|YP_003356935.1| - 0.0023 18.7 0.3 0.0096 16.7 0.1 2.1 1 1 0 2 2 2 1 AAA domain Adeno_IVa2 PF02456.10 gi|282164550|ref|YP_003356935.1| - 0.0041 15.8 0.0 0.061 11.9 0.0 2.0 2 0 0 2 2 2 1 Adenovirus IVa2 protein Rad17 PF03215.10 gi|282164550|ref|YP_003356935.1| - 0.0044 15.7 0.0 0.0061 15.3 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_13 PF13166.1 gi|282164550|ref|YP_003356935.1| - 0.012 14.1 0.0 0.22 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|282164550|ref|YP_003356935.1| - 0.015 14.6 0.0 0.037 13.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|282164550|ref|YP_003356935.1| - 0.018 14.7 0.1 2.2 8.1 0.0 2.6 2 1 0 2 2 2 0 Part of AAA domain ABC_ATPase PF09818.4 gi|282164550|ref|YP_003356935.1| - 0.027 13.0 0.0 1.5 7.2 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_18 PF13238.1 gi|282164550|ref|YP_003356935.1| - 0.033 14.5 0.0 0.11 12.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|282164550|ref|YP_003356935.1| - 0.047 13.6 0.0 0.18 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|282164550|ref|YP_003356935.1| - 0.051 12.6 0.2 0.16 11.0 0.0 1.8 2 0 0 2 2 2 0 KaiC Gemin6 PF06372.7 gi|282164550|ref|YP_003356935.1| - 0.051 12.8 0.0 0.097 11.9 0.0 1.4 1 0 0 1 1 1 0 Gemin6 protein AAA_33 PF13671.1 gi|282164550|ref|YP_003356935.1| - 0.053 13.4 0.0 0.13 12.1 0.0 1.7 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|282164550|ref|YP_003356935.1| - 0.095 12.8 0.2 0.5 10.5 0.0 2.1 2 0 0 2 2 2 0 RNA helicase BPD_transp_1 PF00528.17 gi|282164551|ref|YP_003356936.1| - 2.8e-26 92.1 17.2 2.8e-26 92.1 11.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|282164552|ref|YP_003356937.1| - 1.2e-23 83.5 14.8 1.2e-23 83.5 10.3 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|282164553|ref|YP_003356938.1| - 6.3e-40 137.4 10.4 1e-39 136.7 7.2 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|282164553|ref|YP_003356938.1| - 7.9e-21 73.8 0.9 9.6e-21 73.6 0.6 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|282164553|ref|YP_003356938.1| - 6.2e-10 39.0 0.7 7.9e-10 38.7 0.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|282164553|ref|YP_003356938.1| - 0.051 12.9 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein PGP_phosphatase PF09419.5 gi|282164553|ref|YP_003356938.1| - 0.1 11.9 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial PGP phosphatase PhoU PF01895.14 gi|282164554|ref|YP_003356939.1| - 1.3e-24 86.4 16.7 7.1e-15 55.2 4.4 2.7 3 0 0 3 3 3 2 PhoU domain Antitoxin-MazE PF04014.13 gi|282164554|ref|YP_003356939.1| - 6.1e-08 32.2 0.0 1.4e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE FtsJ PF01728.14 gi|282164555|ref|YP_003356940.1| - 5.9e-55 186.0 0.0 7.2e-55 185.7 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|282164555|ref|YP_003356940.1| - 5.2e-12 45.3 1.8 1.4e-11 44.0 1.3 1.7 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.1 gi|282164555|ref|YP_003356940.1| - 0.00026 20.7 0.0 0.0011 18.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282164555|ref|YP_003356940.1| - 0.0028 18.2 0.1 0.078 13.5 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282164555|ref|YP_003356940.1| - 0.009 15.6 0.0 0.21 11.1 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain NNMT_PNMT_TEMT PF01234.12 gi|282164555|ref|YP_003356940.1| - 0.055 12.4 0.0 0.97 8.3 0.0 2.1 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family SNARE_assoc PF09335.6 gi|282164557|ref|YP_003356942.1| - 6e-25 87.8 5.4 6e-25 87.8 3.7 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein PKD_channel PF08016.7 gi|282164557|ref|YP_003356942.1| - 0.016 13.6 0.5 0.021 13.2 0.4 1.2 1 0 0 1 1 1 0 Polycystin cation channel PNTB PF02233.11 gi|282164557|ref|YP_003356942.1| - 0.25 10.0 4.3 0.078 11.7 1.2 1.4 2 0 0 2 2 2 0 NAD(P) transhydrogenase beta subunit MCH PF02289.11 gi|282164558|ref|YP_003356943.1| - 1.9e-88 296.5 0.5 2.1e-88 296.3 0.3 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Cu_amine_oxidN2 PF02727.11 gi|282164559|ref|YP_003356944.1| - 0.026 14.6 0.0 0.036 14.1 0.0 1.2 1 0 0 1 1 1 0 Copper amine oxidase, N2 domain GTP_EFTU PF00009.22 gi|282164561|ref|YP_003356946.1| - 2.2e-31 108.7 0.1 3.3e-31 108.1 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|282164561|ref|YP_003356946.1| - 9.8e-16 57.7 0.1 2.2e-15 56.5 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|282164561|ref|YP_003356946.1| - 7.7e-13 48.3 0.7 2e-12 47.0 0.5 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|282164561|ref|YP_003356946.1| - 0.0023 17.8 0.1 0.0081 16.1 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|282164561|ref|YP_003356946.1| - 0.004 16.7 5.8 0.033 13.8 0.6 3.5 3 0 0 3 3 3 1 Elongation factor Tu domain 4 AAA_4 PF04326.9 gi|282164561|ref|YP_003356946.1| - 0.011 15.9 0.1 0.028 14.5 0.1 1.7 1 0 0 1 1 1 0 Divergent AAA domain ATP_bind_1 PF03029.12 gi|282164561|ref|YP_003356946.1| - 0.03 13.8 0.0 0.48 9.9 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF2012 PF09430.5 gi|282164562|ref|YP_003356947.1| - 0.082 12.7 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) DUF4352 PF11611.3 gi|282164564|ref|YP_003356949.1| - 0.0012 18.9 0.0 0.0017 18.4 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4352) DUF1180 PF06679.7 gi|282164565|ref|YP_003356950.1| - 0.008 16.0 3.7 0.009 15.9 2.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1180) FAP PF07174.6 gi|282164565|ref|YP_003356950.1| - 0.12 11.6 10.8 0.13 11.5 7.5 1.0 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) DEC-1_N PF04625.8 gi|282164565|ref|YP_003356950.1| - 0.17 10.5 6.5 0.17 10.5 4.5 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region PLRV_ORF5 PF01690.12 gi|282164565|ref|YP_003356950.1| - 0.24 10.5 16.1 0.31 10.1 11.2 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein NUDIX PF00293.23 gi|282164566|ref|YP_003356951.1| - 1.1e-18 67.1 0.0 1.2e-18 67.0 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|282164566|ref|YP_003356951.1| - 0.00019 20.8 0.0 0.00027 20.3 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain MC1 PF05854.6 gi|282164567|ref|YP_003356952.1| - 1.1e-23 83.0 0.7 1.7e-23 82.4 0.5 1.3 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 DUF4412 PF14371.1 gi|282164567|ref|YP_003356952.1| - 0.091 13.2 0.1 0.16 12.4 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4412) Methyltransf_25 PF13649.1 gi|282164568|ref|YP_003356953.1| - 1.1e-07 32.1 0.0 4.6e-07 30.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|282164568|ref|YP_003356953.1| - 4.9e-05 22.7 0.1 0.00013 21.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|282164568|ref|YP_003356953.1| - 0.00084 19.0 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282164568|ref|YP_003356953.1| - 0.0043 17.5 0.0 0.0095 16.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain CCG PF02754.11 gi|282164568|ref|YP_003356953.1| - 0.0049 16.8 0.1 0.018 15.0 0.1 1.9 1 0 0 1 1 1 1 Cysteine-rich domain Glyco_hydro_67N PF03648.9 gi|282164568|ref|YP_003356953.1| - 0.0087 16.0 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 N-terminus Methyltransf_18 PF12847.2 gi|282164568|ref|YP_003356953.1| - 0.0096 16.4 0.1 0.12 12.9 0.1 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282164568|ref|YP_003356953.1| - 0.013 15.5 0.0 0.037 14.0 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Metallophos_2 PF12850.2 gi|282164569|ref|YP_003356954.1| - 2.2e-13 50.3 0.1 3.1e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|282164569|ref|YP_003356954.1| - 2.5e-12 46.6 0.0 9.3e-07 28.4 0.0 2.0 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Sigma70_r1_1 PF03979.9 gi|282164569|ref|YP_003356954.1| - 0.045 13.7 0.1 0.084 12.8 0.1 1.4 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 NmrA PF05368.8 gi|282164569|ref|YP_003356954.1| - 0.13 11.5 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family DUF2204 PF09970.4 gi|282164570|ref|YP_003356955.1| - 2.9e-25 88.7 0.0 3.5e-25 88.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_5 PF14907.1 gi|282164570|ref|YP_003356955.1| - 8.2e-08 31.8 0.0 1.3e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF1814 PF08843.6 gi|282164570|ref|YP_003356955.1| - 0.016 15.0 0.1 0.11 12.3 0.1 1.9 1 1 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF1814) E1-E2_ATPase PF00122.15 gi|282164571|ref|YP_003356956.1| - 7.8e-76 254.1 1.4 7.8e-76 254.1 1.0 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|282164571|ref|YP_003356956.1| - 1.4e-51 174.6 9.1 2.8e-51 173.6 6.3 1.5 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|282164571|ref|YP_003356956.1| - 4.9e-34 118.6 0.0 1.5e-33 117.0 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|282164571|ref|YP_003356956.1| - 1.3e-20 73.1 0.0 2.7e-20 72.1 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|282164571|ref|YP_003356956.1| - 2e-15 57.4 0.0 4.4e-15 56.3 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|282164571|ref|YP_003356956.1| - 8.7e-05 22.2 0.4 0.0031 17.1 0.4 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|282164571|ref|YP_003356956.1| - 0.011 15.9 0.0 0.051 13.8 0.0 2.1 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase Peripla_BP_4 PF13407.1 gi|282164571|ref|YP_003356956.1| - 0.16 11.2 2.4 6.5 6.0 0.2 2.2 1 1 0 2 2 2 0 Periplasmic binding protein domain Co_AT_N PF12557.3 gi|282164571|ref|YP_003356956.1| - 5.3 7.0 6.1 9.3 6.2 4.3 1.4 1 0 0 1 1 1 0 Cob(I)alamin adenosyltransferase N terminal Usp PF00582.21 gi|282164572|ref|YP_003356957.1| - 5.7e-34 117.3 0.7 6.5e-34 117.1 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family AA_kinase PF00696.23 gi|282164573|ref|YP_003356958.1| - 3.1e-45 154.5 2.8 3.6e-45 154.3 1.9 1.0 1 0 0 1 1 1 1 Amino acid kinase family Pyr_redox_2 PF07992.9 gi|282164574|ref|YP_003356959.1| - 7.9e-27 94.4 0.9 1e-26 94.0 0.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|282164574|ref|YP_003356959.1| - 1.3e-13 51.4 0.2 1e-09 38.7 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|282164574|ref|YP_003356959.1| - 1.3e-07 30.8 6.7 0.00068 18.6 0.2 3.2 3 1 1 4 4 4 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|282164574|ref|YP_003356959.1| - 2.7e-07 29.7 4.3 0.00059 18.7 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain Thi4 PF01946.12 gi|282164574|ref|YP_003356959.1| - 1.4e-05 24.3 0.3 0.00012 21.3 0.1 2.2 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|282164574|ref|YP_003356959.1| - 7.6e-05 21.3 0.2 0.0014 17.1 0.0 2.3 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.19 gi|282164574|ref|YP_003356959.1| - 8.5e-05 21.6 2.2 0.029 13.2 0.5 2.6 2 1 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|282164574|ref|YP_003356959.1| - 0.00029 21.1 1.8 0.038 14.4 0.1 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|282164574|ref|YP_003356959.1| - 0.0012 17.9 0.1 0.0025 16.9 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain IlvN PF07991.7 gi|282164574|ref|YP_003356959.1| - 0.0047 16.3 0.2 0.034 13.5 0.0 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain FAD_oxidored PF12831.2 gi|282164574|ref|YP_003356959.1| - 0.0074 15.4 1.4 0.014 14.4 1.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|282164574|ref|YP_003356959.1| - 0.012 15.6 2.1 0.013 15.5 0.3 2.0 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|282164574|ref|YP_003356959.1| - 0.016 14.3 0.1 0.13 11.3 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|282164574|ref|YP_003356959.1| - 0.032 13.9 0.1 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K_oxygenase PF13434.1 gi|282164574|ref|YP_003356959.1| - 0.14 11.0 0.1 2.6 6.8 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|282164574|ref|YP_003356959.1| - 0.15 10.9 0.7 1.1 8.1 0.5 2.0 1 1 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|282164574|ref|YP_003356959.1| - 0.88 9.3 3.2 3.6 7.3 0.2 2.5 3 0 0 3 3 3 0 FAD-NAD(P)-binding SSF PF00474.12 gi|282164575|ref|YP_003356960.1| - 2e-54 184.8 44.9 2.8e-54 184.3 31.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Lactate_perm PF02652.9 gi|282164576|ref|YP_003356961.1| - 3.3e-53 180.9 44.9 2.4e-51 174.8 31.1 2.0 1 1 0 1 1 1 1 L-lactate permease DUF1358 PF07096.6 gi|282164576|ref|YP_003356961.1| - 0.05 13.2 1.2 5.2 6.7 0.1 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1358) UbiD PF01977.11 gi|282164577|ref|YP_003356962.1| - 4.6e-119 397.5 0.9 5.2e-119 397.3 0.6 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PetG PF02529.10 gi|282164577|ref|YP_003356962.1| - 0.14 11.6 0.1 0.31 10.5 0.1 1.5 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 PAS_9 PF13426.1 gi|282164578|ref|YP_003356963.1| - 6.2e-24 84.3 0.0 3.3e-14 53.1 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|282164578|ref|YP_003356963.1| - 3.2e-17 62.2 0.1 8.6e-17 60.8 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|282164578|ref|YP_003356963.1| - 2e-16 59.9 0.1 8.3e-09 35.4 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|282164578|ref|YP_003356963.1| - 5.3e-11 42.3 0.0 1.7e-09 37.4 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|282164578|ref|YP_003356963.1| - 5.6e-10 38.7 0.0 0.00074 19.2 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.1 gi|282164578|ref|YP_003356963.1| - 5.7e-05 22.9 0.0 0.00096 18.9 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_10 PF13596.1 gi|282164578|ref|YP_003356963.1| - 0.0014 18.8 0.1 0.011 15.9 0.0 2.5 2 1 0 2 2 2 1 PAS domain PAS_3 PF08447.6 gi|282164578|ref|YP_003356963.1| - 0.022 14.8 0.0 0.063 13.3 0.0 1.8 1 0 0 1 1 1 0 PAS fold HATPase_c_3 PF13589.1 gi|282164578|ref|YP_003356963.1| - 0.028 14.0 0.2 0.11 12.1 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|282164578|ref|YP_003356963.1| - 0.092 12.4 0.0 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 GHKL domain DUF496 PF04363.7 gi|282164578|ref|YP_003356963.1| - 5.6 6.8 6.7 18 5.2 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF496) ThiF PF00899.16 gi|282164579|ref|YP_003356964.1| - 6.1e-44 149.1 0.0 8.4e-44 148.6 0.0 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|282164579|ref|YP_003356964.1| - 2.2e-22 78.4 0.1 3.7e-22 77.7 0.0 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain UDPG_MGDP_dh_N PF03721.9 gi|282164579|ref|YP_003356964.1| - 0.023 14.0 0.0 0.032 13.5 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|282164579|ref|YP_003356964.1| - 0.057 13.0 0.0 0.076 12.6 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|282164579|ref|YP_003356964.1| - 0.079 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA adh_short PF00106.20 gi|282164579|ref|YP_003356964.1| - 0.099 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 short chain dehydrogenase Shikimate_DH PF01488.15 gi|282164579|ref|YP_003356964.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DUF912 PF06024.7 gi|282164580|ref|YP_003356965.1| - 2.9 8.0 5.3 1.1 9.3 1.0 1.9 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DUF4405 PF14358.1 gi|282164580|ref|YP_003356965.1| - 3.8 7.7 6.1 0.68 10.1 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) MRAP PF15183.1 gi|282164580|ref|YP_003356965.1| - 4.2 7.0 5.8 0.69 9.5 1.1 1.8 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family DUF2909 PF11137.3 gi|282164580|ref|YP_003356965.1| - 6 6.6 10.0 8.7 6.1 2.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2909) Flavoprotein PF02441.14 gi|282164582|ref|YP_003356967.1| - 2.3e-30 104.9 0.0 5.1e-30 103.7 0.0 1.5 2 0 0 2 2 2 1 Flavoprotein CBAH PF02275.13 gi|282164582|ref|YP_003356967.1| - 0.0075 15.7 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family HD PF01966.17 gi|282164584|ref|YP_003356969.1| - 1e-14 54.5 2.6 3.1e-14 53.0 0.3 2.6 2 1 0 2 2 2 1 HD domain HDOD PF08668.7 gi|282164584|ref|YP_003356969.1| - 0.0044 16.3 0.0 0.0079 15.4 0.0 1.3 1 0 0 1 1 1 1 HDOD domain UPF0052 PF01933.13 gi|282164585|ref|YP_003356970.1| - 1.5e-46 159.1 0.0 2.3e-46 158.4 0.0 1.3 1 1 0 1 1 1 1 Uncharacterised protein family UPF0052 Fer4_7 PF12838.2 gi|282164586|ref|YP_003356971.1| - 4.6e-09 36.5 17.2 5.7e-07 29.8 4.6 2.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282164586|ref|YP_003356971.1| - 8.4e-09 34.6 19.8 2e-07 30.2 3.7 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282164586|ref|YP_003356971.1| - 1.3e-07 31.2 6.8 1.5e-07 31.1 3.6 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282164586|ref|YP_003356971.1| - 1.6e-07 31.5 4.9 1.6e-07 31.5 3.4 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282164586|ref|YP_003356971.1| - 2.6e-06 27.0 3.7 2.6e-06 27.0 2.6 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282164586|ref|YP_003356971.1| - 1.9e-05 25.3 7.4 0.012 16.3 1.6 2.9 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|282164586|ref|YP_003356971.1| - 2.2e-05 24.2 8.8 5.2e-05 23.0 6.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282164586|ref|YP_003356971.1| - 0.00028 21.1 3.5 0.024 14.9 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282164586|ref|YP_003356971.1| - 0.0011 18.7 4.2 0.0011 18.7 2.9 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|282164586|ref|YP_003356971.1| - 0.01 15.8 6.9 0.045 13.7 4.8 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282164586|ref|YP_003356971.1| - 0.02 15.4 8.8 0.56 10.8 6.0 2.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|282164586|ref|YP_003356971.1| - 0.71 9.7 5.0 1.5 8.7 0.2 2.5 2 0 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Fer4_18 PF13746.1 gi|282164586|ref|YP_003356971.1| - 1.2 9.6 10.4 0.22 11.9 1.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain DZR PF12773.2 gi|282164587|ref|YP_003356972.1| - 0.02 14.6 0.6 0.035 13.9 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|282164587|ref|YP_003356972.1| - 0.022 14.4 0.7 0.042 13.5 0.5 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit IBR PF01485.16 gi|282164587|ref|YP_003356972.1| - 0.039 13.8 1.3 0.075 12.9 0.9 1.4 1 0 0 1 1 1 0 IBR domain Ribosomal_S27e PF01667.12 gi|282164587|ref|YP_003356972.1| - 0.073 12.6 1.2 0.14 11.7 0.8 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 zinc-ribbons_6 PF07191.7 gi|282164587|ref|YP_003356972.1| - 0.076 12.8 0.6 0.13 12.1 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-RING_3 PF14369.1 gi|282164587|ref|YP_003356972.1| - 0.17 11.8 3.5 1.2 9.2 2.4 2.1 1 1 0 1 1 1 0 zinc-finger COX16 PF14138.1 gi|282164587|ref|YP_003356972.1| - 0.35 11.0 4.4 0.74 10.0 3.1 1.5 1 0 0 1 1 1 0 Cytochrome c oxidase assembly protein COX16 NTS PF15447.1 gi|282164587|ref|YP_003356972.1| - 0.53 10.7 3.1 1.8 8.9 2.1 1.9 1 1 0 1 1 1 0 N-terminal segments of PfEMP1 APO_RNA-bind PF05634.6 gi|282164587|ref|YP_003356972.1| - 0.57 9.3 5.0 0.12 11.5 0.5 1.8 2 0 0 2 2 2 0 APO RNA-binding Zn_Tnp_IS1595 PF12760.2 gi|282164587|ref|YP_003356972.1| - 1 9.2 5.2 9.3 6.1 4.2 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain CpXC PF14353.1 gi|282164587|ref|YP_003356972.1| - 3.9 7.4 5.4 12 5.8 0.0 3.0 3 0 0 3 3 3 0 CpXC protein zinc_ribbon_4 PF13717.1 gi|282164587|ref|YP_003356972.1| - 4 7.2 5.8 78 3.0 0.3 2.6 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|282164587|ref|YP_003356972.1| - 4.7 6.8 5.8 79 2.9 0.3 2.6 1 1 1 2 2 2 0 zinc-ribbon domain Acetyltransf_10 PF13673.1 gi|282164588|ref|YP_003356973.1| - 2.2e-07 31.0 0.0 3.6e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|282164588|ref|YP_003356973.1| - 1.8e-06 27.8 0.0 4.2e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|282164588|ref|YP_003356973.1| - 0.00019 21.2 0.2 0.00053 19.8 0.2 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|282164588|ref|YP_003356973.1| - 0.00037 20.6 0.0 0.00075 19.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|282164588|ref|YP_003356973.1| - 0.021 14.4 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|282164588|ref|YP_003356973.1| - 0.022 14.4 0.0 0.048 13.4 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein LAM_C PF12544.3 gi|282164589|ref|YP_003356974.1| - 1.6e-42 144.5 0.0 3.2e-42 143.5 0.0 1.5 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Radical_SAM PF04055.16 gi|282164589|ref|YP_003356974.1| - 4.4e-12 46.4 2.1 2.9e-11 43.8 0.1 2.7 2 2 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|282164589|ref|YP_003356974.1| - 0.00016 21.7 0.0 0.005 16.8 0.0 2.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|282164589|ref|YP_003356974.1| - 0.0014 18.7 0.0 0.012 15.7 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain AsnC_trans_reg PF01037.16 gi|282164590|ref|YP_003356975.1| - 3.6e-11 42.6 0.3 4e-11 42.4 0.2 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|282164590|ref|YP_003356975.1| - 0.0035 17.0 0.1 0.004 16.8 0.1 1.2 1 0 0 1 1 1 1 GYD domain MIase PF02426.11 gi|282164590|ref|YP_003356975.1| - 0.021 14.6 0.0 0.024 14.4 0.0 1.1 1 0 0 1 1 1 0 Muconolactone delta-isomerase 5_3_exonuc_N PF02739.11 gi|282164591|ref|YP_003356976.1| - 0.063 12.6 0.8 0.081 12.2 0.5 1.1 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain Mrr_N PF14338.1 gi|282164591|ref|YP_003356976.1| - 0.23 11.5 1.5 0.31 11.1 0.0 1.9 3 0 0 3 3 3 0 Mrr N-terminal domain DWNN PF08783.6 gi|282164591|ref|YP_003356976.1| - 0.24 11.3 0.1 0.24 11.3 0.1 1.7 2 0 0 2 2 2 0 DWNN domain Ring_hydroxyl_A PF00848.14 gi|282164592|ref|YP_003356977.1| - 0.051 13.2 0.1 0.054 13.1 0.1 1.0 1 0 0 1 1 1 0 Ring hydroxylating alpha subunit (catalytic domain) rve PF00665.21 gi|282164593|ref|YP_003356978.1| - 8.3e-27 93.6 0.0 1.3e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.1 gi|282164593|ref|YP_003356978.1| - 1.1e-19 69.7 0.1 2.2e-19 68.7 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.1 gi|282164593|ref|YP_003356978.1| - 1e-13 51.0 3.4 1e-13 51.0 2.4 2.1 3 0 0 3 3 3 1 HTH-like domain rve_2 PF13333.1 gi|282164593|ref|YP_003356978.1| - 2.3e-08 33.9 3.6 2.3e-08 33.9 2.5 1.7 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.1 gi|282164593|ref|YP_003356978.1| - 2.7e-07 30.6 0.1 3.8e-07 30.1 0.1 1.2 1 0 0 1 1 1 1 DDE domain HTH_28 PF13518.1 gi|282164593|ref|YP_003356978.1| - 0.021 14.8 0.9 0.044 13.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|282164593|ref|YP_003356978.1| - 0.034 14.2 0.1 0.15 12.1 0.0 2.3 2 1 0 2 2 2 0 Winged helix-turn helix HTH_17 PF12728.2 gi|282164593|ref|YP_003356978.1| - 0.057 13.6 0.2 6.5 7.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|282164594|ref|YP_003356979.1| - 5.7e-13 48.6 1.0 6.6e-13 48.4 0.7 1.2 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.1 gi|282164594|ref|YP_003356979.1| - 9.6e-07 28.6 0.0 1.7e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|282164594|ref|YP_003356979.1| - 0.00011 21.2 0.0 0.00051 19.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.1 gi|282164594|ref|YP_003356979.1| - 0.00026 21.1 0.5 0.00032 20.8 0.3 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|282164594|ref|YP_003356979.1| - 0.00039 19.9 0.0 0.00086 18.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Frankia_peptide PF14407.1 gi|282164594|ref|YP_003356979.1| - 0.00067 19.3 0.2 1.1 9.0 0.0 2.2 2 0 0 2 2 2 2 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. HTH_Tnp_IS630 PF01710.11 gi|282164594|ref|YP_003356979.1| - 0.0065 16.1 0.2 0.0083 15.7 0.1 1.2 1 1 0 1 1 1 1 Transposase CENP-B_N PF04218.8 gi|282164594|ref|YP_003356979.1| - 0.031 13.6 0.1 0.071 12.5 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain DUF433 PF04255.9 gi|282164594|ref|YP_003356979.1| - 0.036 13.4 0.0 0.066 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF433) DUF217 PF02697.9 gi|282164594|ref|YP_003356979.1| - 0.044 14.0 0.6 2.2 8.5 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized ACR, COG1753 DUF512 PF04459.7 gi|282164595|ref|YP_003356980.1| - 6.4e-28 97.2 0.0 9.2e-28 96.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|282164595|ref|YP_003356980.1| - 1.2e-12 48.3 5.1 5.9e-11 42.8 3.3 2.8 1 1 0 1 1 1 1 Radical SAM superfamily DUF1628 PF07790.6 gi|282164596|ref|YP_003356981.1| - 1.3e-09 38.6 1.1 1.9e-09 38.1 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Glycos_transf_2 PF00535.21 gi|282164597|ref|YP_003356982.1| - 3.3e-19 69.1 0.1 5.4e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282164597|ref|YP_003356982.1| - 1.1e-06 28.5 0.0 1.5e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|282164597|ref|YP_003356982.1| - 0.006 16.8 0.0 0.0099 16.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 PGM_PMM_II PF02879.11 gi|282164597|ref|YP_003356982.1| - 0.036 14.4 0.0 0.063 13.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Gryzun PF07919.7 gi|282164597|ref|YP_003356982.1| - 0.12 10.6 0.3 0.18 10.1 0.2 1.1 1 0 0 1 1 1 0 Gryzun, putative trafficking through Golgi Glycos_transf_2 PF00535.21 gi|282164598|ref|YP_003356983.1| - 1.6e-29 102.7 0.0 2.5e-29 102.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282164598|ref|YP_003356983.1| - 3e-23 82.8 0.0 4e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|282164598|ref|YP_003356983.1| - 7.6e-16 58.3 0.0 9.9e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|282164598|ref|YP_003356983.1| - 4.1e-12 45.7 0.0 5.9e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|282164598|ref|YP_003356983.1| - 2.3e-09 36.8 0.2 8.1e-08 31.7 0.0 2.6 1 1 1 2 2 2 1 Glycosyltransferase like family Glyco_transf_21 PF13506.1 gi|282164598|ref|YP_003356983.1| - 2.4e-07 30.2 0.0 3.9e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.9 gi|282164598|ref|YP_003356983.1| - 1.1e-05 24.8 0.0 2e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.1 gi|282164598|ref|YP_003356983.1| - 0.0059 16.8 0.0 0.051 13.8 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|282164599|ref|YP_003356984.1| - 2.9e-22 78.8 0.1 5.5e-22 77.9 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282164599|ref|YP_003356984.1| - 1.7e-16 60.6 0.0 6.5e-16 58.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|282164599|ref|YP_003356984.1| - 8.5e-10 38.7 0.0 1.7e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|282164599|ref|YP_003356984.1| - 0.00028 20.7 0.8 0.00068 19.4 0.6 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_2 PF00535.21 gi|282164600|ref|YP_003356985.1| - 5e-22 78.3 1.1 5e-22 78.3 0.7 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282164600|ref|YP_003356985.1| - 9e-21 74.7 0.0 1.2e-20 74.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|282164600|ref|YP_003356985.1| - 3.2e-07 29.8 0.2 9.2e-06 25.0 0.0 2.2 1 1 1 2 2 2 1 Glycosyltransferase like family Glyco_trans_2_3 PF13632.1 gi|282164600|ref|YP_003356985.1| - 1.7e-05 24.5 0.4 6.3e-05 22.7 0.3 1.9 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|282164600|ref|YP_003356985.1| - 0.00052 19.3 0.0 0.0011 18.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|282164600|ref|YP_003356985.1| - 0.036 14.3 0.0 0.076 13.3 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.21 gi|282164601|ref|YP_003356986.1| - 3e-37 127.8 1.1 4.9e-37 127.1 0.8 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282164601|ref|YP_003356986.1| - 7.9e-18 65.0 0.0 2.1e-17 63.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|282164601|ref|YP_003356986.1| - 4.8e-15 55.3 1.2 6.4e-15 54.9 0.8 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|282164601|ref|YP_003356986.1| - 3.2e-06 26.9 0.4 6.1e-06 26.0 0.3 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|282164601|ref|YP_003356986.1| - 0.01 16.1 0.1 0.029 14.6 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.1 gi|282164601|ref|YP_003356986.1| - 0.03 13.5 0.2 0.11 11.7 0.0 2.1 2 1 0 2 2 2 0 Glycosyltransferase like family Glycos_transf_2 PF00535.21 gi|282164602|ref|YP_003356987.1| - 1.5e-40 138.6 1.7 2.8e-40 137.7 1.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282164602|ref|YP_003356987.1| - 2.2e-18 66.9 0.0 1.2e-16 61.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|282164602|ref|YP_003356987.1| - 4.1e-18 65.4 3.0 6.7e-18 64.7 2.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|282164602|ref|YP_003356987.1| - 3.8e-06 27.1 0.0 7.7e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 GNT-I PF03071.10 gi|282164602|ref|YP_003356987.1| - 2e-05 23.3 0.1 3.2e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 GNT-I family Glyco_trans_2_3 PF13632.1 gi|282164602|ref|YP_003356987.1| - 0.013 15.2 0.0 0.037 13.7 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Profilin PF00235.14 gi|282164602|ref|YP_003356987.1| - 0.028 14.5 0.0 0.05 13.7 0.0 1.5 1 0 0 1 1 1 0 Profilin Glyco_trans_1_2 PF13524.1 gi|282164603|ref|YP_003356988.1| - 4.8e-30 103.6 0.0 1.1e-29 102.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF268 PF03269.9 gi|282164604|ref|YP_003356989.1| - 1.6e-15 57.0 0.1 2.9e-15 56.2 0.1 1.3 1 0 0 1 1 1 1 Caenorhabditis protein of unknown function, DUF268 Methyltransf_11 PF08241.7 gi|282164604|ref|YP_003356989.1| - 0.0022 18.4 0.0 0.004 17.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain ABC_tran PF00005.22 gi|282164605|ref|YP_003356990.1| - 1.4e-22 80.4 0.0 4.6e-22 78.7 0.0 1.9 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282164605|ref|YP_003356990.1| - 8.8e-11 42.2 11.8 6.6e-05 23.0 0.2 3.2 2 1 1 3 3 3 2 AAA domain Wzt_C PF14524.1 gi|282164605|ref|YP_003356990.1| - 7.2e-05 22.5 0.0 0.00012 21.8 0.0 1.3 1 0 0 1 1 1 1 Wzt C-terminal domain AAA_29 PF13555.1 gi|282164605|ref|YP_003356990.1| - 0.0011 18.4 0.0 0.0027 17.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|282164605|ref|YP_003356990.1| - 0.0067 16.7 0.1 0.0067 16.7 0.1 2.3 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|282164605|ref|YP_003356990.1| - 0.021 14.0 0.0 0.12 11.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|282164605|ref|YP_003356990.1| - 0.033 13.4 0.0 0.75 8.9 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|282164605|ref|YP_003356990.1| - 0.045 14.0 0.3 0.12 12.6 0.2 1.9 1 1 0 1 1 1 0 AAA domain DUF2813 PF11398.3 gi|282164605|ref|YP_003356990.1| - 0.045 12.8 0.1 6.5 5.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) NTPase_1 PF03266.10 gi|282164605|ref|YP_003356990.1| - 0.051 13.2 0.4 4.4 6.9 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_17 PF13207.1 gi|282164605|ref|YP_003356990.1| - 0.055 14.2 0.9 0.13 13.0 0.3 1.9 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|282164605|ref|YP_003356990.1| - 0.085 12.8 0.3 0.14 12.0 0.2 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|282164605|ref|YP_003356990.1| - 0.1 12.7 0.1 0.35 11.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain ABC2_membrane PF01061.19 gi|282164606|ref|YP_003356991.1| - 9.3e-30 103.3 37.9 1.6e-29 102.5 21.3 2.0 1 1 1 2 2 2 2 ABC-2 type transporter DUF2614 PF11023.3 gi|282164606|ref|YP_003356991.1| - 7.4 6.3 8.8 1.6 8.5 2.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2614) PMT_2 PF13231.1 gi|282164608|ref|YP_003356993.1| - 2.4e-12 47.0 20.2 2.4e-12 47.0 14.0 4.4 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF4131 PF13567.1 gi|282164608|ref|YP_003356993.1| - 0.0064 15.9 0.3 0.0064 15.9 0.2 5.8 5 1 1 6 6 6 3 Domain of unknown function (DUF4131) DUF1628 PF07790.6 gi|282164609|ref|YP_003356994.1| - 1.1e-15 58.1 9.0 1.1e-15 58.1 6.3 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) Na_H_antiport_2 PF13726.1 gi|282164609|ref|YP_003356994.1| - 0.16 11.8 9.0 0.056 13.3 3.1 2.0 2 0 0 2 2 2 0 Na+-H+ antiporter family DUF2453 PF10507.4 gi|282164609|ref|YP_003356994.1| - 0.89 9.3 8.1 0.43 10.4 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2453) FUSC-like PF12805.2 gi|282164609|ref|YP_003356994.1| - 2.6 6.9 4.2 3.1 6.6 2.9 1.2 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS Yip1 PF04893.12 gi|282164609|ref|YP_003356994.1| - 9.1 5.7 10.3 2.2 7.7 4.2 1.8 1 1 1 2 2 2 0 Yip1 domain H_PPase PF03030.11 gi|282164610|ref|YP_003356995.1| - 1.2e-271 902.9 51.5 1.4e-271 902.7 35.7 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase PDDEXK_3 PF13366.1 gi|282164611|ref|YP_003356996.1| - 4e-40 136.5 1.1 4.6e-40 136.3 0.8 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily GHMP_kinases_C PF08544.8 gi|282164612|ref|YP_003356997.1| - 1.7e-09 37.7 0.0 2.9e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|282164612|ref|YP_003356997.1| - 4e-05 23.5 0.0 8.5e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain Radical_SAM PF04055.16 gi|282164613|ref|YP_003356998.1| - 7.1e-15 55.5 0.1 9.8e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|282164613|ref|YP_003356998.1| - 0.0051 16.8 0.0 0.0093 15.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF970 PF06153.6 gi|282164613|ref|YP_003356998.1| - 0.034 14.0 0.0 0.18 11.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF970) LEH PF07858.7 gi|282164613|ref|YP_003356998.1| - 0.14 12.1 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Limonene-1,2-epoxide hydrolase catalytic domain Peptidase_M50 PF02163.17 gi|282164614|ref|YP_003356999.1| - 2.6e-05 23.2 11.7 2.6e-05 23.2 8.1 2.2 1 1 1 2 2 2 1 Peptidase family M50 FTR1 PF03239.9 gi|282164614|ref|YP_003356999.1| - 0.0014 17.6 0.6 0.0026 16.7 0.4 1.5 1 0 0 1 1 1 1 Iron permease FTR1 family DUF788 PF05620.6 gi|282164614|ref|YP_003356999.1| - 0.73 9.6 7.6 1.3 8.8 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF788) DUF754 PF05449.6 gi|282164614|ref|YP_003356999.1| - 0.89 9.6 6.7 14 5.8 1.4 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF754) PhosphMutase PF10143.4 gi|282164615|ref|YP_003357000.1| - 7.7e-62 207.9 0.0 1.1e-61 207.3 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|282164615|ref|YP_003357000.1| - 3e-47 161.1 0.1 3.4e-47 160.9 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily DUF4410 PF14366.1 gi|282164615|ref|YP_003357000.1| - 0.014 15.0 0.1 0.075 12.7 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4410) Pheromone PF08015.6 gi|282164615|ref|YP_003357000.1| - 0.041 14.6 0.0 0.096 13.5 0.0 1.5 1 0 0 1 1 1 0 Fungal mating-type pheromone DUF99 PF01949.11 gi|282164616|ref|YP_003357001.1| - 6e-61 204.8 0.1 6.9e-61 204.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DUF2324 PF10086.4 gi|282164617|ref|YP_003357002.1| - 2.8e-32 111.7 20.7 3.5e-32 111.3 14.3 1.2 1 0 0 1 1 1 1 Putative membrane peptidase family (DUF2324) VPEP PF07589.6 gi|282164617|ref|YP_003357002.1| - 0.26 11.2 0.3 0.26 11.2 0.2 3.9 5 0 0 5 5 5 0 PEP-CTERM motif Usp PF00582.21 gi|282164618|ref|YP_003357003.1| - 3.2e-24 85.7 0.0 4.5e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family Acetyltransf_3 PF13302.1 gi|282164619|ref|YP_003357004.1| - 1.5e-21 77.0 0.0 2.1e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|282164619|ref|YP_003357004.1| - 6.1e-10 38.9 0.0 9.6e-10 38.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|282164619|ref|YP_003357004.1| - 8.2e-10 38.8 0.0 8.7e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|282164619|ref|YP_003357004.1| - 0.0024 18.0 0.0 0.0039 17.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain 7TMR-DISM_7TM PF07695.6 gi|282164620|ref|YP_003357005.1| - 0.98 9.0 12.1 1.2 8.7 8.4 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling Fumarate_red_C PF02300.12 gi|282164620|ref|YP_003357005.1| - 1.2 9.0 5.6 4.5 7.1 0.1 2.1 1 1 1 2 2 2 0 Fumarate reductase subunit C TIP39 PF14980.1 gi|282164621|ref|YP_003357006.1| - 0.13 11.9 0.9 0.22 11.2 0.6 1.4 1 0 0 1 1 1 0 TIP39 peptide Aminotran_1_2 PF00155.16 gi|282164622|ref|YP_003357007.1| - 9.9e-46 156.3 0.0 1.6e-45 155.6 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|282164622|ref|YP_003357007.1| - 0.032 12.9 0.0 0.12 11.0 0.0 1.9 1 1 0 1 1 1 0 Aminotransferase class-V CobD_Cbib PF03186.8 gi|282164623|ref|YP_003357008.1| - 8.4e-97 323.7 0.1 1e-96 323.5 0.1 1.1 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.10 gi|282164624|ref|YP_003357009.1| - 1.7e-49 168.5 16.6 2.1e-49 168.2 11.5 1.1 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF4257 PF14074.1 gi|282164624|ref|YP_003357009.1| - 0.46 10.1 5.9 0.29 10.7 0.5 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF4257) NTP_transf_3 PF12804.2 gi|282164625|ref|YP_003357010.1| - 1e-20 74.4 0.1 2.1e-20 73.4 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|282164625|ref|YP_003357010.1| - 2.6e-12 46.7 0.0 4.2e-12 46.0 0.0 1.4 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|282164625|ref|YP_003357010.1| - 6.3e-09 35.7 0.0 8.6e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase DUF2064 PF09837.4 gi|282164625|ref|YP_003357010.1| - 0.016 14.8 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) NTP_transferase PF00483.18 gi|282164625|ref|YP_003357010.1| - 0.052 12.8 0.1 0.12 11.6 0.0 1.6 2 0 0 2 2 2 0 Nucleotidyl transferase DUF1743 PF08489.6 gi|282164626|ref|YP_003357011.1| - 1e-23 83.3 0.1 1.2e-21 76.6 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1743) Radical_SAM PF04055.16 gi|282164627|ref|YP_003357012.1| - 3.3e-15 56.6 0.1 5.8e-15 55.8 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Hema_stalk PF08720.5 gi|282164627|ref|YP_003357012.1| - 0.013 15.0 0.1 0.71 9.3 0.0 2.5 2 1 1 3 3 3 0 Influenza C hemagglutinin stalk DUF2540 PF10802.3 gi|282164627|ref|YP_003357012.1| - 0.023 14.3 0.0 0.11 12.1 0.0 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2540) DBI_PRT PF02277.12 gi|282164628|ref|YP_003357013.1| - 2.3e-21 76.2 2.6 2.3e-21 76.2 1.8 1.6 2 0 0 2 2 2 1 Phosphoribosyltransferase TPP_enzyme_C PF02775.16 gi|282164629|ref|YP_003357014.1| - 2.1e-08 33.8 0.0 4.6e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|282164629|ref|YP_003357014.1| - 3.2e-08 33.2 0.0 1.7e-06 27.6 0.0 2.5 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR_N PF01855.14 gi|282164629|ref|YP_003357014.1| - 0.057 12.9 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HTH_11 PF08279.7 gi|282164629|ref|YP_003357014.1| - 0.066 12.8 0.0 10 5.8 0.0 2.6 2 0 0 2 2 2 0 HTH domain HMGL-like PF00682.14 gi|282164630|ref|YP_003357015.1| - 2.9e-72 243.1 2.0 3.9e-72 242.7 1.4 1.2 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.19 gi|282164630|ref|YP_003357015.1| - 4.8e-05 22.7 0.0 8.6e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF561 PF04481.7 gi|282164630|ref|YP_003357015.1| - 0.013 14.4 0.0 0.47 9.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF561) PdxJ PF03740.8 gi|282164630|ref|YP_003357015.1| - 0.021 13.9 0.0 0.038 13.1 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthesis protein PdxJ Aconitase PF00330.15 gi|282164631|ref|YP_003357016.1| - 6.9e-81 272.0 3.8 1.4e-52 178.7 0.1 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|282164631|ref|YP_003357016.1| - 0.0037 15.8 0.1 0.0062 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) RelB PF04221.7 gi|282164631|ref|YP_003357016.1| - 0.013 15.2 0.1 3.2 7.5 0.0 2.4 2 0 0 2 2 2 0 RelB antitoxin Aconitase_C PF00694.14 gi|282164632|ref|YP_003357017.1| - 1.2e-21 77.1 0.0 4.6e-21 75.2 0.0 1.8 1 1 1 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|282164632|ref|YP_003357017.1| - 0.00054 19.4 0.1 0.014 14.7 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.15 gi|282164633|ref|YP_003357018.1| - 8.6e-94 314.3 0.0 1e-93 314.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Usp PF00582.21 gi|282164635|ref|YP_003357020.1| - 1.2e-29 103.2 0.1 1.2e-16 61.1 0.1 3.0 2 1 0 2 2 2 2 Universal stress protein family ETF PF01012.16 gi|282164635|ref|YP_003357020.1| - 0.0062 16.2 0.5 0.091 12.4 0.1 2.3 2 1 0 2 2 2 1 Electron transfer flavoprotein domain HisKA_2 PF07568.7 gi|282164635|ref|YP_003357020.1| - 0.0074 16.1 0.0 3.8 7.4 0.0 2.5 2 0 0 2 2 2 2 Histidine kinase Herpes_VP19C PF03327.9 gi|282164635|ref|YP_003357020.1| - 0.02 13.7 0.0 0.028 13.3 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus capsid shell protein VP19C DUF810 PF05664.6 gi|282164635|ref|YP_003357020.1| - 0.13 10.5 0.0 0.13 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF810) AA_permease_2 PF13520.1 gi|282164636|ref|YP_003357021.1| - 4.6e-39 134.1 47.9 6.3e-39 133.7 33.2 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|282164636|ref|YP_003357021.1| - 2.1e-35 121.9 0.6 2.2e-16 60.3 0.0 3.2 2 1 0 2 2 2 2 Universal stress protein family AA_permease PF00324.16 gi|282164636|ref|YP_003357021.1| - 1.7e-30 105.8 37.2 2.8e-30 105.0 25.8 1.2 1 0 0 1 1 1 1 Amino acid permease ETF PF01012.16 gi|282164636|ref|YP_003357021.1| - 0.0017 18.0 0.5 0.047 13.4 0.0 2.3 2 0 0 2 2 2 1 Electron transfer flavoprotein domain KdpA PF03814.10 gi|282164637|ref|YP_003357022.1| - 2.6e-183 610.0 22.0 3.6e-183 609.5 15.2 1.1 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit E1-E2_ATPase PF00122.15 gi|282164638|ref|YP_003357023.1| - 5.5e-34 117.1 4.5 5.5e-34 117.1 3.1 2.4 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|282164638|ref|YP_003357023.1| - 5.5e-33 115.2 0.4 8.3e-33 114.6 0.3 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|282164638|ref|YP_003357023.1| - 2.7e-16 60.3 0.0 5e-16 59.4 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|282164638|ref|YP_003357023.1| - 1.4e-05 24.8 1.9 0.00042 19.9 0.6 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase KdpC PF02669.10 gi|282164639|ref|YP_003357024.1| - 4.5e-45 153.6 0.1 5.9e-45 153.2 0.1 1.1 1 0 0 1 1 1 1 K+-transporting ATPase, c chain Usp PF00582.21 gi|282164640|ref|YP_003357025.1| - 4.1e-34 117.7 0.0 5.6e-16 59.0 0.0 3.0 2 1 0 2 2 2 2 Universal stress protein family Nuc_N PF14448.1 gi|282164640|ref|YP_003357025.1| - 0.055 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Nuclease N terminal SIMPL PF04402.9 gi|282164641|ref|YP_003357026.1| - 1.7e-52 178.3 7.2 2.1e-52 178.0 5.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) TgMIC1 PF11476.3 gi|282164641|ref|YP_003357026.1| - 0.55 9.7 4.0 0.5 9.9 0.7 2.4 1 1 2 3 3 3 0 Toxoplasma gondii micronemal protein 1 TgMIC1 PALP PF00291.20 gi|282164645|ref|YP_003357030.1| - 2.2e-40 138.8 0.0 2.6e-40 138.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme SIS PF01380.17 gi|282164647|ref|YP_003357032.1| - 4e-08 32.9 0.0 0.0016 18.0 0.0 2.7 2 1 0 2 2 2 2 SIS domain DUF1232 PF06803.7 gi|282164648|ref|YP_003357033.1| - 2.1e-16 59.0 5.4 2.8e-16 58.6 3.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) E1-E2_ATPase PF00122.15 gi|282164649|ref|YP_003357034.1| - 2.2e-59 200.2 0.1 2.2e-59 200.2 0.0 2.3 2 2 1 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|282164649|ref|YP_003357034.1| - 8e-25 88.5 0.1 1.4e-24 87.7 0.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|282164649|ref|YP_003357034.1| - 3.1e-21 75.7 13.7 9e-21 74.2 6.9 2.5 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.21 gi|282164649|ref|YP_003357034.1| - 4.3e-19 67.7 0.2 1.1e-18 66.4 0.1 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|282164649|ref|YP_003357034.1| - 2.3e-13 50.7 0.1 5.1e-13 49.6 0.1 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|282164649|ref|YP_003357034.1| - 0.00012 21.9 0.0 0.00051 19.9 0.0 2.1 2 0 0 2 2 2 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|282164649|ref|YP_003357034.1| - 0.0052 16.3 0.7 0.012 15.1 0.2 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Toxin_trans PF07952.7 gi|282164649|ref|YP_003357034.1| - 0.071 12.0 0.0 0.12 11.1 0.0 1.3 1 0 0 1 1 1 0 Clostridium neurotoxin, Translocation domain DUF1275 PF06912.6 gi|282164649|ref|YP_003357034.1| - 0.17 11.0 11.1 0.045 12.9 1.6 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1275) CRS1_YhbY PF01985.16 gi|282164650|ref|YP_003357035.1| - 5e-23 80.8 2.4 5.5e-23 80.7 1.7 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_L10 PF00466.15 gi|282164650|ref|YP_003357035.1| - 0.033 14.0 0.8 0.052 13.4 0.6 1.5 1 1 0 1 1 1 0 Ribosomal protein L10 CBS PF00571.23 gi|282164651|ref|YP_003357036.1| - 6.9e-27 92.9 2.4 1.9e-12 46.7 0.1 2.4 2 0 0 2 2 2 2 CBS domain ParBc PF02195.13 gi|282164651|ref|YP_003357036.1| - 2.9e-13 49.7 0.1 8.4e-13 48.2 0.0 1.8 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|282164651|ref|YP_003357036.1| - 0.0028 17.5 0.0 0.017 14.9 0.0 2.1 1 1 0 1 1 1 1 Putative ParB-like nuclease DUF1015 PF06245.6 gi|282164651|ref|YP_003357036.1| - 0.017 13.6 0.4 0.06 11.8 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1015) PRA-PH PF01503.12 gi|282164652|ref|YP_003357037.1| - 1.1e-14 54.4 0.0 1.4e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|282164652|ref|YP_003357037.1| - 0.00088 19.1 0.7 0.0013 18.6 0.1 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain AIRC PF00731.15 gi|282164652|ref|YP_003357037.1| - 0.11 11.7 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 AIR carboxylase PPC PF04151.10 gi|282164653|ref|YP_003357038.1| - 0.28 12.1 0.1 0.28 12.1 0.1 1.9 2 1 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain HTH_24 PF13412.1 gi|282164654|ref|YP_003357039.1| - 1.3e-18 66.1 0.0 2.6e-09 36.2 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|282164654|ref|YP_003357039.1| - 1.6e-09 37.3 0.0 4e-06 26.4 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.15 gi|282164654|ref|YP_003357039.1| - 8.6e-09 34.9 0.0 0.00046 19.7 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|282164654|ref|YP_003357039.1| - 1.7e-08 34.0 0.0 1.7e-05 24.3 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.2 gi|282164654|ref|YP_003357039.1| - 2.1e-06 27.3 0.0 0.021 14.6 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|282164654|ref|YP_003357039.1| - 3.8e-06 26.5 0.0 0.0017 17.9 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|282164654|ref|YP_003357039.1| - 0.00023 20.6 0.0 0.12 11.9 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|282164654|ref|YP_003357039.1| - 0.0018 17.8 0.0 0.04 13.4 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|282164654|ref|YP_003357039.1| - 0.0018 17.7 0.1 0.031 13.7 0.0 2.1 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_23 PF13384.1 gi|282164654|ref|YP_003357039.1| - 0.0018 17.8 0.0 0.082 12.5 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_40 PF14493.1 gi|282164654|ref|YP_003357039.1| - 0.0023 18.1 0.0 0.68 10.1 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|282164654|ref|YP_003357039.1| - 0.0046 16.7 0.0 0.35 10.6 0.0 2.2 2 0 0 2 2 2 1 MerR HTH family regulatory protein HTH_3 PF01381.17 gi|282164654|ref|YP_003357039.1| - 0.0046 16.7 0.0 0.023 14.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_11 PF08279.7 gi|282164654|ref|YP_003357039.1| - 0.0064 16.1 0.0 1.8 8.2 0.0 2.3 2 0 0 2 2 2 1 HTH domain RNA_pol_Rpc34 PF05158.7 gi|282164654|ref|YP_003357039.1| - 0.0067 15.6 0.2 0.0085 15.3 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_26 PF13443.1 gi|282164654|ref|YP_003357039.1| - 0.014 15.6 0.4 0.53 10.5 0.0 2.8 2 1 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.1 gi|282164654|ref|YP_003357039.1| - 0.014 15.1 0.0 0.23 11.2 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GerE PF00196.14 gi|282164654|ref|YP_003357039.1| - 0.02 14.1 0.0 7 6.0 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_Tnp_4 PF13613.1 gi|282164654|ref|YP_003357039.1| - 0.021 14.3 0.0 0.23 11.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease HTH_28 PF13518.1 gi|282164654|ref|YP_003357039.1| - 0.026 14.5 0.0 1.8 8.6 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain NUMOD1 PF07453.8 gi|282164654|ref|YP_003357039.1| - 0.045 13.6 0.0 1.9 8.4 0.0 2.4 2 0 0 2 2 2 0 NUMOD1 domain HTH_34 PF13601.1 gi|282164654|ref|YP_003357039.1| - 0.046 13.7 0.0 9.2 6.3 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|282164654|ref|YP_003357039.1| - 0.05 13.1 0.0 0.63 9.6 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_41 PF14502.1 gi|282164654|ref|YP_003357039.1| - 0.066 12.8 0.0 0.47 10.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|282164654|ref|YP_003357039.1| - 0.079 13.0 0.0 3.1 7.9 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator HTH_Tnp_IS630 PF01710.11 gi|282164654|ref|YP_003357039.1| - 0.099 12.3 0.1 4 7.1 0.0 2.2 1 1 1 2 2 2 0 Transposase Rhodanese PF00581.15 gi|282164655|ref|YP_003357040.1| - 2.3e-21 76.2 0.0 9e-16 58.2 0.0 2.7 2 1 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|282164655|ref|YP_003357040.1| - 5.6e-10 39.1 1.1 1e-09 38.3 0.7 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DeoC PF01791.4 gi|282164656|ref|YP_003357041.1| - 6.7e-49 166.3 0.5 8.1e-49 166.0 0.3 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase BPL_C PF02237.12 gi|282164656|ref|YP_003357041.1| - 0.026 14.2 0.0 0.059 13.0 0.0 1.6 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain Metalloenzyme PF01676.13 gi|282164657|ref|YP_003357042.1| - 9e-09 35.0 0.0 9.4e-08 31.7 0.0 2.4 3 0 0 3 3 3 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|282164657|ref|YP_003357042.1| - 7e-05 22.3 0.0 0.0002 20.8 0.0 1.8 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4147 PF13660.1 gi|282164658|ref|YP_003357043.1| - 9.3e-82 273.7 0.0 1.3e-81 273.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|282164658|ref|YP_003357043.1| - 4.5e-35 120.0 1.1 8.9e-35 119.0 0.7 1.5 1 0 0 1 1 1 1 MOFRL family FlpD PF02662.11 gi|282164659|ref|YP_003357044.1| - 6.3e-25 87.2 0.0 1.9e-24 85.7 0.0 1.8 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|282164659|ref|YP_003357044.1| - 8.2e-23 79.0 31.6 7.9e-08 31.5 2.1 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282164659|ref|YP_003357044.1| - 2.8e-16 59.6 25.4 6.7e-08 32.7 3.6 4.4 3 2 0 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282164659|ref|YP_003357044.1| - 1.7e-14 53.3 30.4 1.1e-08 34.7 2.9 4.0 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282164659|ref|YP_003357044.1| - 1.9e-12 46.2 32.0 6.7e-05 22.5 1.7 5.0 4 0 0 4 4 4 3 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|282164659|ref|YP_003357044.1| - 2.8e-12 46.9 0.0 2.3e-11 43.9 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_6 PF12837.2 gi|282164659|ref|YP_003357044.1| - 1.6e-11 43.5 38.4 2e-05 24.2 1.7 5.2 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282164659|ref|YP_003357044.1| - 2.6e-11 44.1 20.3 0.00084 20.0 0.1 4.8 3 1 2 5 5 5 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|282164659|ref|YP_003357044.1| - 3.5e-11 42.7 20.6 0.0018 18.0 0.3 5.1 5 0 0 5 5 5 4 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282164659|ref|YP_003357044.1| - 1.1e-10 41.8 15.8 0.006 17.1 0.7 4.9 4 0 0 4 4 4 4 4Fe-4S single cluster domain DAO PF01266.19 gi|282164659|ref|YP_003357044.1| - 4.2e-10 39.0 3.5 3.9e-07 29.3 0.2 2.8 3 0 0 3 3 2 2 FAD dependent oxidoreductase Fer4_8 PF13183.1 gi|282164659|ref|YP_003357044.1| - 6.1e-10 38.9 24.1 2.2e-06 27.5 5.8 3.8 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282164659|ref|YP_003357044.1| - 7.6e-10 38.9 31.0 2.1e-05 24.6 4.3 4.2 4 2 1 5 5 3 3 4Fe-4S dicluster domain NAD_binding_8 PF13450.1 gi|282164659|ref|YP_003357044.1| - 1.5e-09 37.7 0.1 3.1e-09 36.7 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|282164659|ref|YP_003357044.1| - 2.1e-08 33.4 0.5 8.8e-07 28.1 0.8 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|282164659|ref|YP_003357044.1| - 2.3e-08 33.5 0.2 3.2e-08 33.1 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|282164659|ref|YP_003357044.1| - 1.5e-07 30.8 0.1 3.1e-07 29.7 0.1 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|282164659|ref|YP_003357044.1| - 1.4e-06 28.6 3.3 0.00011 22.5 0.8 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|282164659|ref|YP_003357044.1| - 1.7e-06 27.1 5.6 2.1e-06 26.8 2.3 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|282164659|ref|YP_003357044.1| - 5.4e-06 26.6 0.1 6.8e-05 23.0 0.1 2.6 3 1 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|282164659|ref|YP_003357044.1| - 1.9e-05 23.7 0.4 0.00032 19.7 0.0 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|282164659|ref|YP_003357044.1| - 2.6e-05 23.4 1.1 4.6e-05 22.6 0.7 1.4 1 0 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|282164659|ref|YP_003357044.1| - 0.0002 20.1 1.4 0.001 17.7 0.3 2.1 2 0 0 2 2 2 1 Tryptophan halogenase HI0933_like PF03486.9 gi|282164659|ref|YP_003357044.1| - 0.00025 19.6 2.5 0.00047 18.7 1.8 1.4 1 0 0 1 1 1 1 HI0933-like protein Fer4_18 PF13746.1 gi|282164659|ref|YP_003357044.1| - 0.00043 20.6 26.8 0.1 13.0 0.3 4.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282164659|ref|YP_003357044.1| - 0.00064 20.0 35.5 0.064 13.6 8.4 5.0 4 2 2 6 6 4 3 4Fe-4S dicluster domain Amino_oxidase PF01593.19 gi|282164659|ref|YP_003357044.1| - 0.0023 17.0 0.1 0.013 14.6 0.0 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Fer4_13 PF13370.1 gi|282164659|ref|YP_003357044.1| - 0.014 15.7 29.8 0.023 15.0 1.1 4.7 4 0 0 4 4 4 0 4Fe-4S single cluster domain 3HCDH_N PF02737.13 gi|282164659|ref|YP_003357044.1| - 0.022 14.4 0.2 0.04 13.5 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_3 PF12798.2 gi|282164659|ref|YP_003357044.1| - 0.026 15.0 5.6 0.026 15.0 3.9 6.5 7 0 0 7 7 5 0 4Fe-4S binding domain NAD_binding_9 PF13454.1 gi|282164659|ref|YP_003357044.1| - 0.036 13.8 2.6 0.76 9.5 0.2 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding Fer4_4 PF12800.2 gi|282164659|ref|YP_003357044.1| - 0.05 13.9 36.4 0.052 13.8 1.9 4.7 4 0 0 4 4 3 0 4Fe-4S binding domain NAD_binding_7 PF13241.1 gi|282164659|ref|YP_003357044.1| - 0.086 13.1 0.0 0.24 11.6 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding Fer4_11 PF13247.1 gi|282164659|ref|YP_003357044.1| - 9.6 6.1 25.0 0.38 10.6 1.0 4.5 3 2 0 4 4 4 0 4Fe-4S dicluster domain CCG PF02754.11 gi|282164660|ref|YP_003357045.1| - 1.6e-19 69.6 0.3 3.2e-14 52.6 0.1 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|282164661|ref|YP_003357046.1| - 2.2e-11 43.6 8.0 3.7e-11 42.8 5.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282164661|ref|YP_003357046.1| - 1.1e-08 35.1 7.1 2.7e-08 33.9 4.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282164661|ref|YP_003357046.1| - 1.7e-07 31.4 9.0 3.4e-07 30.4 6.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282164661|ref|YP_003357046.1| - 2.8e-07 30.8 7.0 5.5e-07 29.8 4.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282164661|ref|YP_003357046.1| - 6.3e-07 29.1 10.9 2.2e-06 27.3 7.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282164661|ref|YP_003357046.1| - 2.7e-06 27.7 4.7 0.0023 18.3 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282164661|ref|YP_003357046.1| - 2.8e-05 24.7 4.7 0.049 14.3 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|282164661|ref|YP_003357046.1| - 3.7e-05 23.3 12.4 0.00033 20.4 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|282164661|ref|YP_003357046.1| - 5.8e-05 23.1 12.3 0.00087 19.4 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|282164661|ref|YP_003357046.1| - 0.00014 21.3 13.8 0.0017 17.8 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|282164661|ref|YP_003357046.1| - 0.0006 20.3 4.0 0.013 16.0 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|282164661|ref|YP_003357046.1| - 0.0042 17.4 2.2 0.0042 17.4 1.5 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|282164661|ref|YP_003357046.1| - 0.0072 16.1 2.7 0.0072 16.1 1.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282164661|ref|YP_003357046.1| - 0.016 15.0 9.3 0.076 12.8 6.5 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|282164661|ref|YP_003357046.1| - 0.64 9.6 6.9 3.8 7.1 0.2 2.2 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|282164661|ref|YP_003357046.1| - 7.6 7.3 16.4 16 6.3 4.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain PALP PF00291.20 gi|282164662|ref|YP_003357047.1| - 5.4e-27 94.8 0.0 7.1e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme YkyA PF10368.4 gi|282164662|ref|YP_003357047.1| - 0.21 10.9 0.0 0.32 10.3 0.0 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein TPP_enzyme_C PF02775.16 gi|282164663|ref|YP_003357048.1| - 2.1e-15 56.6 0.3 6.3e-15 55.0 0.0 1.9 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|282164663|ref|YP_003357048.1| - 5.5e-10 39.0 0.0 1.9e-09 37.2 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KGG PF10685.4 gi|282164665|ref|YP_003357050.1| - 1.2e-14 53.7 11.2 0.00063 19.6 0.0 4.4 3 1 1 4 4 4 4 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282164665|ref|YP_003357050.1| - 2.9e-08 33.9 19.6 6.2e-06 26.4 6.2 2.1 1 1 1 2 2 2 2 Small hydrophilic plant seed protein TUSC2 PF15000.1 gi|282164665|ref|YP_003357050.1| - 0.01 15.8 6.4 6.8 6.7 0.1 3.3 1 1 2 3 3 3 0 Tumour suppressor candidate 2 PARP_reg PF02877.9 gi|282164665|ref|YP_003357050.1| - 0.045 13.4 0.0 0.76 9.4 0.0 2.0 1 1 1 2 2 2 0 Poly(ADP-ribose) polymerase, regulatory domain SASP PF00269.15 gi|282164665|ref|YP_003357050.1| - 0.31 10.9 11.7 3.8 7.4 0.2 2.5 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type Antimicrobial_6 PF08036.6 gi|282164665|ref|YP_003357050.1| - 1.8 8.3 3.8 26 4.6 0.1 2.9 2 1 1 3 3 3 0 Diapausin family of antimicrobial peptide KGG PF10685.4 gi|282164666|ref|YP_003357051.1| - 2.1e-11 43.4 5.5 0.0009 19.1 0.1 3.4 3 0 0 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282164666|ref|YP_003357051.1| - 3.1e-06 27.4 12.7 6.2e-06 26.4 8.8 1.5 1 1 0 1 1 1 1 Small hydrophilic plant seed protein SASP PF00269.15 gi|282164666|ref|YP_003357051.1| - 0.00056 19.7 3.1 0.11 12.3 0.6 2.2 2 0 0 2 2 2 2 Small, acid-soluble spore proteins, alpha/beta type TUSC2 PF15000.1 gi|282164666|ref|YP_003357051.1| - 0.35 10.9 1.7 12 6.0 0.2 2.4 1 1 1 2 2 2 0 Tumour suppressor candidate 2 MT0933_antitox PF14013.1 gi|282164666|ref|YP_003357051.1| - 5.3 7.2 6.9 15 5.8 1.8 2.6 2 1 0 2 2 2 0 MT0933-like antitoxin protein DUF2795 PF11387.3 gi|282164667|ref|YP_003357052.1| - 6.7e-17 61.0 0.0 8.1e-17 60.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) zf-B_box PF00643.19 gi|282164668|ref|YP_003357053.1| - 0.0013 18.5 6.7 0.0075 16.1 2.5 2.2 2 0 0 2 2 2 1 B-box zinc finger zinc-ribbons_6 PF07191.7 gi|282164668|ref|YP_003357053.1| - 0.05 13.3 5.5 0.11 12.2 3.8 1.7 1 1 0 1 1 1 0 zinc-ribbons Prok-RING_2 PF14445.1 gi|282164668|ref|YP_003357053.1| - 0.12 12.3 5.9 0.1 12.5 3.4 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 2 DUF4428 PF14471.1 gi|282164668|ref|YP_003357053.1| - 0.19 11.5 12.7 2.9 7.7 8.5 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) zf-dskA_traR PF01258.12 gi|282164668|ref|YP_003357053.1| - 0.19 11.5 9.3 14 5.5 6.4 2.9 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-C2HC5 PF06221.8 gi|282164668|ref|YP_003357053.1| - 0.26 11.0 7.9 0.38 10.5 5.5 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type C6_DPF PF10170.4 gi|282164668|ref|YP_003357053.1| - 0.27 11.2 3.6 0.37 10.8 2.5 1.3 1 0 0 1 1 1 0 Cysteine-rich domain DUF2180 PF09947.4 gi|282164668|ref|YP_003357053.1| - 0.39 10.4 11.1 1 9.1 7.2 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2180) zf-C3HC4_2 PF13923.1 gi|282164668|ref|YP_003357053.1| - 1.6 8.8 9.2 22 5.1 5.6 2.3 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) FYVE PF01363.16 gi|282164668|ref|YP_003357053.1| - 1.9 8.4 12.0 55 3.7 8.3 2.3 1 1 0 1 1 1 0 FYVE zinc finger C1_1 PF00130.17 gi|282164668|ref|YP_003357053.1| - 3 7.6 7.4 50 3.7 0.1 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RING_5 PF14634.1 gi|282164668|ref|YP_003357053.1| - 3.4 7.4 10.2 2.5 7.8 6.1 1.6 1 1 0 1 1 1 0 zinc-RING finger domain FYVE_2 PF02318.11 gi|282164668|ref|YP_003357053.1| - 8.2 6.3 8.1 22 4.9 5.6 1.8 1 1 0 1 1 1 0 FYVE-type zinc finger Peptidase_C15 PF01470.12 gi|282164669|ref|YP_003357054.1| - 0.019 14.8 0.1 0.029 14.2 0.0 1.3 1 1 0 1 1 1 0 Pyroglutamyl peptidase 4HBT PF03061.17 gi|282164670|ref|YP_003357055.1| - 1e-12 48.0 0.1 1.4e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|282164670|ref|YP_003357055.1| - 0.006 16.5 0.0 0.0075 16.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) MTH865 PF07747.6 gi|282164671|ref|YP_003357056.1| - 1.4e-12 47.0 0.0 1.6e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 MTH865-like family SnoaL PF07366.7 gi|282164672|ref|YP_003357057.1| - 5.9e-34 116.3 0.0 6.9e-34 116.1 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|282164672|ref|YP_003357057.1| - 2e-18 66.6 0.0 2.4e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain UbiA PF01040.13 gi|282164673|ref|YP_003357058.1| - 4.6e-28 98.1 32.5 6.6e-28 97.6 22.5 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF998 PF06197.8 gi|282164674|ref|YP_003357059.1| - 3.9e-22 78.4 19.6 4.5e-22 78.2 13.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Frag1 PF10277.4 gi|282164674|ref|YP_003357059.1| - 0.015 14.8 14.3 0.039 13.4 9.9 1.7 1 1 0 1 1 1 0 Frag1/DRAM/Sfk1 family DUF1616 PF07760.6 gi|282164674|ref|YP_003357059.1| - 0.1 11.6 3.1 0.13 11.4 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) HlyIII PF03006.15 gi|282164674|ref|YP_003357059.1| - 1.3 8.3 12.4 2.7 7.3 4.9 2.2 2 0 0 2 2 2 0 Haemolysin-III related CxxCxxCC PF03692.10 gi|282164675|ref|YP_003357060.1| - 0.0004 20.7 3.7 0.00076 19.8 2.2 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain BNR_2 PF13088.1 gi|282164676|ref|YP_003357061.1| - 1.6e-06 27.6 0.8 6.9e-05 22.2 0.8 2.7 1 1 1 2 2 2 2 BNR repeat-like domain BNR PF02012.15 gi|282164676|ref|YP_003357061.1| - 6.1e-06 25.2 14.4 0.15 11.9 0.1 4.6 4 0 0 4 4 4 3 BNR/Asp-box repeat WWE PF02825.15 gi|282164676|ref|YP_003357061.1| - 0.029 13.7 9.1 0.95 8.9 1.6 2.7 2 0 0 2 2 2 0 WWE domain Lamp PF01299.12 gi|282164677|ref|YP_003357062.1| - 0.61 9.1 2.4 0.92 8.5 1.7 1.2 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) PLRV_ORF5 PF01690.12 gi|282164677|ref|YP_003357062.1| - 2.7 7.0 17.5 4.2 6.4 11.9 1.4 1 1 0 1 1 1 0 Potato leaf roll virus readthrough protein TALPID3 PF15324.1 gi|282164677|ref|YP_003357062.1| - 3.6 4.8 4.9 4.6 4.4 3.4 1.1 1 0 0 1 1 1 0 Hedgehog signalling target HAD_2 PF13419.1 gi|282164678|ref|YP_003357063.1| - 8.9e-31 107.4 0.0 1.1e-30 107.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|282164678|ref|YP_003357063.1| - 3.4e-15 57.0 0.3 1.2e-14 55.2 0.2 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|282164678|ref|YP_003357063.1| - 1.1e-07 32.2 0.0 1.4e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|282164678|ref|YP_003357063.1| - 3.8e-07 29.9 0.2 0.0001 22.1 0.1 3.0 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|282164678|ref|YP_003357063.1| - 2.3e-05 24.0 0.2 5.1e-05 22.8 0.1 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like NIF PF03031.13 gi|282164678|ref|YP_003357063.1| - 0.0017 18.0 0.0 0.0038 16.9 0.0 1.6 2 0 0 2 2 2 1 NLI interacting factor-like phosphatase NT5C PF06941.7 gi|282164678|ref|YP_003357063.1| - 0.0044 16.5 0.1 0.0094 15.4 0.0 1.6 1 1 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DUF705 PF05152.7 gi|282164678|ref|YP_003357063.1| - 0.01 14.8 0.0 0.016 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF705) Put_Phosphatase PF06888.7 gi|282164678|ref|YP_003357063.1| - 0.045 12.9 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative Phosphatase Hydrolase_3 PF08282.7 gi|282164678|ref|YP_003357063.1| - 0.082 12.4 0.3 0.26 10.8 0.0 2.0 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase DnaJ PF00226.26 gi|282164679|ref|YP_003357064.1| - 3.5e-26 90.7 2.9 6e-26 89.9 2.0 1.4 1 0 0 1 1 1 1 DnaJ domain DUF1837 PF08878.6 gi|282164679|ref|YP_003357064.1| - 0.089 12.3 0.4 0.13 11.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1837) DUF4248 PF14053.1 gi|282164679|ref|YP_003357064.1| - 0.11 12.1 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) CarboxypepD_reg PF13620.1 gi|282164680|ref|YP_003357065.1| - 6.2e-08 32.5 0.5 4.6e-07 29.8 0.4 2.2 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282164680|ref|YP_003357065.1| - 0.0014 18.5 0.1 0.0074 16.3 0.1 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|282164680|ref|YP_003357065.1| - 0.0056 16.4 0.6 0.01 15.5 0.5 1.5 1 0 0 1 1 1 1 Cna protein B-type domain Acetyltransf_4 PF13420.1 gi|282164681|ref|YP_003357066.1| - 1.9e-17 63.6 0.0 2.1e-17 63.5 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|282164681|ref|YP_003357066.1| - 1.8e-12 47.1 0.1 2.7e-12 46.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|282164681|ref|YP_003357066.1| - 7e-11 42.4 0.0 8.5e-11 42.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|282164681|ref|YP_003357066.1| - 2.7e-08 33.9 0.0 3.6e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|282164681|ref|YP_003357066.1| - 2.7e-08 33.8 0.0 4e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|282164681|ref|YP_003357066.1| - 3e-06 27.2 0.0 3.6e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|282164681|ref|YP_003357066.1| - 1.8e-05 24.3 0.1 2.8e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|282164681|ref|YP_003357066.1| - 0.00015 21.6 0.0 0.00023 21.0 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|282164681|ref|YP_003357066.1| - 0.0096 15.7 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Usp PF00582.21 gi|282164682|ref|YP_003357067.1| - 3.9e-32 111.3 0.2 4.6e-32 111.1 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family Lig_chan-Glu_bd PF10613.4 gi|282164682|ref|YP_003357067.1| - 0.057 13.3 0.0 1.6 8.7 0.0 2.4 2 0 0 2 2 2 0 Ligated ion channel L-glutamate- and glycine-binding site Big_1 PF02369.11 gi|282164684|ref|YP_003357069.1| - 3.7e-07 29.9 0.1 0.011 15.6 0.0 2.2 1 1 1 2 2 2 2 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|282164684|ref|YP_003357069.1| - 2e-05 24.5 0.7 5e-05 23.2 0.2 1.8 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|282164684|ref|YP_003357069.1| - 0.042 13.8 0.1 0.21 11.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) TPR_12 PF13424.1 gi|282164685|ref|YP_003357070.1| - 8.4e-21 73.7 15.2 5.1e-08 32.7 1.0 5.5 3 1 1 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164685|ref|YP_003357070.1| - 1.6e-20 71.8 9.9 3.4e-05 23.2 0.0 7.4 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282164685|ref|YP_003357070.1| - 1.2e-16 59.1 14.7 0.0048 16.7 0.0 7.7 8 0 0 8 8 7 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|282164685|ref|YP_003357070.1| - 4.3e-12 45.4 16.9 1.6e-06 27.6 0.4 5.4 2 1 3 5 5 5 4 TPR repeat TPR_8 PF13181.1 gi|282164685|ref|YP_003357070.1| - 1.1e-09 37.3 14.1 0.0044 16.6 0.0 7.2 8 0 0 8 8 8 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282164685|ref|YP_003357070.1| - 2.5e-07 29.9 10.5 0.0056 16.3 0.0 7.1 8 0 0 8 8 7 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282164685|ref|YP_003357070.1| - 1.2e-05 25.8 22.2 0.13 12.9 0.1 6.4 4 1 3 8 8 6 5 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282164685|ref|YP_003357070.1| - 1.3e-05 25.3 8.2 0.15 12.5 0.0 6.5 7 0 0 7 7 6 1 Tetratricopeptide repeat SNAP PF14938.1 gi|282164685|ref|YP_003357070.1| - 1.9e-05 24.0 7.9 0.02 14.0 0.7 2.1 1 1 1 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_10 PF13374.1 gi|282164685|ref|YP_003357070.1| - 0.00015 21.5 20.7 0.37 10.8 0.1 7.3 8 0 0 8 8 8 2 Tetratricopeptide repeat Apc5 PF12862.2 gi|282164685|ref|YP_003357070.1| - 0.00026 20.7 0.4 0.011 15.5 0.1 2.8 2 0 0 2 2 2 1 Anaphase-promoting complex subunit 5 TPR_14 PF13428.1 gi|282164685|ref|YP_003357070.1| - 0.00034 20.9 14.2 0.81 10.4 0.0 7.3 5 2 2 7 7 7 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282164685|ref|YP_003357070.1| - 0.00048 20.4 13.7 3.2 8.1 0.1 5.6 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282164685|ref|YP_003357070.1| - 0.0005 19.8 1.2 6.7 6.6 0.1 5.0 3 2 1 4 4 4 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|282164685|ref|YP_003357070.1| - 0.0021 18.0 1.8 0.32 10.9 0.0 2.8 3 0 0 3 3 3 1 Tetratricopeptide repeat BTAD PF03704.12 gi|282164685|ref|YP_003357070.1| - 0.028 14.6 1.4 0.26 11.5 0.1 2.7 1 1 0 2 2 2 0 Bacterial transcriptional activator domain RPN7 PF10602.4 gi|282164685|ref|YP_003357070.1| - 0.067 12.5 1.1 0.6 9.4 0.2 2.4 1 1 1 2 2 2 0 26S proteasome subunit RPN7 TPR_17 PF13431.1 gi|282164685|ref|YP_003357070.1| - 0.37 11.0 6.7 19 5.7 0.0 5.6 6 0 0 6 6 6 0 Tetratricopeptide repeat Rsm22 PF09243.5 gi|282164686|ref|YP_003357071.1| - 1.4e-05 24.2 0.0 2.1e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.1 gi|282164686|ref|YP_003357071.1| - 0.0016 18.0 0.0 0.0064 16.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282164686|ref|YP_003357071.1| - 0.0018 18.8 0.0 0.0042 17.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.13 gi|282164686|ref|YP_003357071.1| - 0.12 11.7 0.1 2.1 7.5 0.0 2.3 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain DUF2298 PF10060.4 gi|282164687|ref|YP_003357072.1| - 5.5e-18 65.0 35.5 5.5e-18 65.0 24.6 1.9 1 1 1 2 2 2 1 Uncharacterized membrane protein (DUF2298) DUF2759 PF10958.3 gi|282164687|ref|YP_003357072.1| - 0.012 15.1 2.1 0.012 15.1 1.5 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2759) CTDII PF01556.13 gi|282164688|ref|YP_003357073.1| - 6.5e-34 115.6 1.5 5.8e-22 77.3 0.2 3.3 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|282164688|ref|YP_003357073.1| - 3.2e-27 94.0 2.7 3.2e-27 94.0 1.9 1.9 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|282164688|ref|YP_003357073.1| - 1.5e-14 53.7 14.9 3.2e-14 52.7 10.3 1.6 1 0 0 1 1 1 1 DnaJ central domain PADR1 PF08063.7 gi|282164688|ref|YP_003357073.1| - 6.6 6.2 11.0 1.5 8.2 0.4 2.7 2 1 0 2 2 2 0 PADR1 (NUC008) domain HSP70 PF00012.15 gi|282164689|ref|YP_003357074.1| - 3.9e-240 797.9 15.9 3e-237 788.3 11.0 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|282164689|ref|YP_003357074.1| - 2e-19 69.3 2.9 2e-19 69.3 2.0 2.0 2 1 0 2 2 2 1 MreB/Mbl protein StbA PF06406.6 gi|282164689|ref|YP_003357074.1| - 2.2e-05 23.5 5.9 0.0014 17.6 0.1 3.1 3 1 1 4 4 4 2 StbA protein FtsA PF14450.1 gi|282164689|ref|YP_003357074.1| - 0.0015 18.3 12.9 0.69 9.7 0.1 5.4 3 3 0 3 3 3 2 Cell division protein FtsA Hydantoinase_A PF01968.13 gi|282164689|ref|YP_003357074.1| - 0.033 13.2 11.5 0.02 13.9 0.9 3.7 3 1 0 3 3 3 0 Hydantoinase/oxoprolinase GrpE PF01025.14 gi|282164690|ref|YP_003357075.1| - 2.8e-48 163.6 7.1 3.3e-48 163.3 4.9 1.0 1 0 0 1 1 1 1 GrpE DUF1451 PF07295.6 gi|282164690|ref|YP_003357075.1| - 0.25 11.1 6.0 0.36 10.6 3.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) HlyD PF00529.15 gi|282164690|ref|YP_003357075.1| - 0.36 10.0 4.4 0.47 9.7 3.0 1.1 1 0 0 1 1 1 0 HlyD family secretion protein Pirin PF02678.11 gi|282164692|ref|YP_003357077.1| - 1.2e-19 70.1 0.5 1.9e-19 69.5 0.4 1.3 1 0 0 1 1 1 1 Pirin Cupin_2 PF07883.6 gi|282164692|ref|YP_003357077.1| - 0.0067 15.9 2.0 0.083 12.4 0.1 2.3 2 0 0 2 2 2 1 Cupin domain Response_reg PF00072.19 gi|282164693|ref|YP_003357078.1| - 3.5e-18 65.6 0.0 4e-18 65.4 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain MTH865 PF07747.6 gi|282164694|ref|YP_003357079.1| - 1.8e-09 37.0 0.0 2.2e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 MTH865-like family DUF3724 PF12521.3 gi|282164694|ref|YP_003357079.1| - 0.21 11.3 1.6 0.99 9.2 1.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3724) ATP_bind_3 PF01171.15 gi|282164695|ref|YP_003357080.1| - 4.8e-16 58.7 0.0 9.8e-16 57.7 0.0 1.5 2 0 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.11 gi|282164695|ref|YP_003357080.1| - 3.8e-07 28.9 0.0 6.7e-07 28.1 0.0 1.4 1 1 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|282164695|ref|YP_003357080.1| - 0.0032 17.3 0.0 0.0053 16.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.16 gi|282164695|ref|YP_003357080.1| - 0.015 14.8 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase IL8 PF00048.15 gi|282164695|ref|YP_003357080.1| - 0.05 13.5 0.3 0.13 12.2 0.2 1.7 1 0 0 1 1 1 0 Small cytokines (intecrine/chemokine), interleukin-8 like NAD_synthase PF02540.12 gi|282164695|ref|YP_003357080.1| - 0.15 10.9 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 NAD synthase Zn-ribbon_8 PF09723.5 gi|282164695|ref|YP_003357080.1| - 5 7.1 10.2 0.87 9.5 0.3 3.6 4 0 0 4 4 4 0 Zinc ribbon domain DUF4097 PF13349.1 gi|282164696|ref|YP_003357081.1| - 0.02 14.4 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) TPR_11 PF13414.1 gi|282164697|ref|YP_003357082.1| - 2e-13 49.7 0.1 3.6e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 TPR repeat TPR_2 PF07719.12 gi|282164697|ref|YP_003357082.1| - 2.2e-12 45.8 0.1 9.3e-07 28.3 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164697|ref|YP_003357082.1| - 1.2e-09 37.4 0.0 5.3e-05 22.6 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282164697|ref|YP_003357082.1| - 1.8e-08 34.8 0.2 2.5e-08 34.3 0.1 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164697|ref|YP_003357082.1| - 5.2e-08 32.8 0.3 0.00035 20.9 0.0 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282164697|ref|YP_003357082.1| - 5.3e-06 26.2 0.4 1.7e-05 24.6 0.3 1.8 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282164697|ref|YP_003357082.1| - 8.4e-06 25.5 0.0 0.65 10.3 0.0 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282164697|ref|YP_003357082.1| - 1.1e-05 24.8 0.0 0.00078 19.0 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282164697|ref|YP_003357082.1| - 3.8e-05 23.1 0.0 0.0001 21.8 0.0 1.8 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282164697|ref|YP_003357082.1| - 0.00025 21.2 0.1 0.0005 20.3 0.0 1.6 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282164697|ref|YP_003357082.1| - 0.014 15.2 1.1 0.076 12.8 0.7 1.9 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_21 PF09976.4 gi|282164697|ref|YP_003357082.1| - 0.02 14.8 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282164697|ref|YP_003357082.1| - 0.022 15.2 0.1 0.45 11.0 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|282164697|ref|YP_003357082.1| - 0.045 12.9 0.0 0.11 11.6 0.0 1.7 1 1 0 1 1 1 0 SHNi-TPR RtcB PF01139.12 gi|282164698|ref|YP_003357083.1| - 2.2e-157 524.3 0.2 2.5e-157 524.1 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Archease PF01951.11 gi|282164699|ref|YP_003357084.1| - 3.6e-36 124.1 0.2 4e-36 123.9 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) HEAT_2 PF13646.1 gi|282164701|ref|YP_003357086.1| - 8.1e-35 118.9 12.7 1.2e-13 51.1 0.8 5.5 3 2 3 7 7 7 6 HEAT repeats HEAT_EZ PF13513.1 gi|282164701|ref|YP_003357086.1| - 1.7e-13 50.6 3.3 0.012 16.0 0.0 5.8 5 1 1 6 6 6 4 HEAT-like repeat HEAT_PBS PF03130.11 gi|282164701|ref|YP_003357086.1| - 8.5e-13 47.4 13.1 0.00011 22.3 0.0 7.8 10 0 0 10 10 10 4 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|282164701|ref|YP_003357086.1| - 1.7e-12 46.2 2.6 0.0078 16.2 0.0 6.3 6 0 0 6 6 6 3 HEAT repeat Arm PF00514.18 gi|282164701|ref|YP_003357086.1| - 1.4e-07 31.0 4.0 0.0069 16.1 0.0 5.6 5 1 2 7 7 7 2 Armadillo/beta-catenin-like repeat Cnd1 PF12717.2 gi|282164701|ref|YP_003357086.1| - 0.0078 16.0 0.3 4.2 7.1 0.1 3.5 2 1 0 2 2 2 1 non-SMC mitotic condensation complex subunit 1 CbiA PF01656.18 gi|282164703|ref|YP_003357088.1| - 2.9e-26 92.0 0.4 3.6e-26 91.7 0.3 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|282164703|ref|YP_003357088.1| - 1.7e-11 43.8 0.2 1.2e-06 27.8 0.0 2.0 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|282164703|ref|YP_003357088.1| - 7e-11 42.3 0.0 9.1e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|282164703|ref|YP_003357088.1| - 2.4e-06 26.8 0.1 5.6e-06 25.6 0.1 1.5 1 1 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|282164703|ref|YP_003357088.1| - 0.00011 21.6 0.0 0.00027 20.3 0.0 1.7 1 1 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|282164703|ref|YP_003357088.1| - 0.00055 19.0 0.3 0.0029 16.6 0.1 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|282164703|ref|YP_003357088.1| - 0.00098 18.7 0.6 0.0018 17.9 0.4 1.5 1 1 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|282164703|ref|YP_003357088.1| - 0.0041 16.2 0.3 0.0075 15.3 0.2 1.3 1 0 0 1 1 1 1 VirC1 protein ParA PF10609.4 gi|282164703|ref|YP_003357088.1| - 0.056 13.3 1.1 0.15 11.9 0.5 1.9 1 1 1 2 2 2 0 ParA/MinD ATPase like AAA_25 PF13481.1 gi|282164703|ref|YP_003357088.1| - 0.072 12.4 0.7 0.16 11.3 0.5 1.7 1 1 0 1 1 1 0 AAA domain dCMP_cyt_deam_1 PF00383.17 gi|282164705|ref|YP_003357090.1| - 3.5e-20 71.5 0.0 4.4e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|282164705|ref|YP_003357090.1| - 0.00085 18.9 0.0 0.0018 17.9 0.0 1.6 1 1 0 1 1 1 1 APOBEC-like N-terminal domain Bd3614-deam PF14439.1 gi|282164705|ref|YP_003357090.1| - 0.014 15.2 0.7 0.045 13.6 0.1 2.0 2 1 0 2 2 2 0 Bd3614-like deaminase XOO_2897-deam PF14440.1 gi|282164705|ref|YP_003357090.1| - 0.059 13.0 0.0 0.079 12.6 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase DUF2164 PF09932.4 gi|282164706|ref|YP_003357091.1| - 2e-23 81.9 1.6 2.1e-23 81.8 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2164) 7TMR-DISM_7TM PF07695.6 gi|282164708|ref|YP_003357093.1| - 0.014 15.0 5.8 0.018 14.7 4.0 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling HlyIII PF03006.15 gi|282164708|ref|YP_003357093.1| - 0.021 14.2 2.0 0.028 13.8 1.4 1.2 1 0 0 1 1 1 0 Haemolysin-III related NfeD PF01957.13 gi|282164708|ref|YP_003357093.1| - 0.047 13.8 1.2 0.066 13.3 0.9 1.2 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding IncA PF04156.9 gi|282164708|ref|YP_003357093.1| - 0.052 13.1 0.5 0.12 11.9 0.3 1.6 1 1 0 1 1 1 0 IncA protein YfhO PF09586.5 gi|282164708|ref|YP_003357093.1| - 0.11 10.5 4.6 0.14 10.1 3.2 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO COPI_assoc PF08507.5 gi|282164708|ref|YP_003357093.1| - 0.52 9.9 6.8 0.083 12.5 1.5 1.7 1 1 1 2 2 2 0 COPI associated protein zf-DHHC PF01529.15 gi|282164709|ref|YP_003357094.1| - 0.49 9.7 1.5 4.9 6.5 0.0 2.2 1 1 1 2 2 2 0 DHHC palmitoyltransferase DUF4225 PF13988.1 gi|282164709|ref|YP_003357094.1| - 1.5 8.2 6.7 0.79 9.1 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF4225) PIG-F PF06699.6 gi|282164709|ref|YP_003357094.1| - 2.4 8.0 13.6 10 6.0 7.2 2.7 1 1 1 3 3 3 0 GPI biosynthesis protein family Pig-F SUR7 PF06687.7 gi|282164709|ref|YP_003357094.1| - 7.1 6.1 19.4 0.59 9.6 2.2 2.6 1 1 2 3 3 3 0 SUR7/PalI family Flavi_NS2B PF01002.14 gi|282164709|ref|YP_003357094.1| - 9.4 5.8 12.7 0.47 10.0 3.1 2.9 1 1 2 3 3 3 0 Flavivirus non-structural protein NS2B HTH_45 PF14947.1 gi|282164710|ref|YP_003357095.1| - 0.00024 20.8 0.1 0.00042 20.0 0.0 1.4 2 0 0 2 2 2 1 Winged helix-turn-helix ABC_tran PF00005.22 gi|282164711|ref|YP_003357096.1| - 4.2e-30 104.8 0.0 6.6e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282164711|ref|YP_003357096.1| - 2.4e-12 47.4 0.0 1.1e-06 28.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282164711|ref|YP_003357096.1| - 0.00011 21.3 0.0 0.0022 17.0 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|282164711|ref|YP_003357096.1| - 0.00068 20.0 0.7 0.00083 19.7 0.0 1.5 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|282164711|ref|YP_003357096.1| - 0.00099 18.3 0.0 0.011 15.0 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|282164711|ref|YP_003357096.1| - 0.0027 17.5 0.1 0.031 14.1 0.0 2.6 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|282164711|ref|YP_003357096.1| - 0.0032 17.1 0.0 0.0073 16.0 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_10 PF12846.2 gi|282164711|ref|YP_003357096.1| - 0.0087 15.5 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|282164711|ref|YP_003357096.1| - 0.054 13.6 0.2 0.54 10.4 0.1 2.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|282164711|ref|YP_003357096.1| - 0.067 12.8 0.4 0.36 10.5 0.0 2.3 4 1 0 4 4 4 0 NTPase IstB_IS21 PF01695.12 gi|282164711|ref|YP_003357096.1| - 0.068 12.5 0.1 1.9 7.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|282164711|ref|YP_003357096.1| - 0.089 11.8 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SRP54 PF00448.17 gi|282164711|ref|YP_003357096.1| - 0.097 12.0 0.3 0.16 11.4 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|282164711|ref|YP_003357096.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC2_membrane_2 PF12679.2 gi|282164712|ref|YP_003357097.1| - 4.4e-15 55.2 24.5 8.5e-15 54.3 17.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282164712|ref|YP_003357097.1| - 5.8e-15 55.0 25.7 7.1e-15 54.8 17.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|282164712|ref|YP_003357097.1| - 9.5e-07 28.1 26.9 1.4e-06 27.6 18.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|282164713|ref|YP_003357098.1| - 3.1e-26 92.2 0.1 9.3e-15 55.1 0.0 3.5 3 0 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|282164713|ref|YP_003357098.1| - 1.1e-10 41.0 0.2 0.015 14.5 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|282164713|ref|YP_003357098.1| - 4.2e-10 40.0 1.0 0.0016 18.4 0.0 4.2 4 0 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|282164713|ref|YP_003357098.1| - 1.1e-08 34.4 0.1 0.0018 17.7 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain DnaJ_CXXCXGXG PF00684.14 gi|282164713|ref|YP_003357098.1| - 2.3e-08 33.9 3.1 4.9e-05 23.3 0.3 3.3 3 0 0 3 3 3 1 DnaJ central domain AAA_16 PF13191.1 gi|282164713|ref|YP_003357098.1| - 2.7e-08 34.0 0.0 0.00013 22.0 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_15 PF13175.1 gi|282164713|ref|YP_003357098.1| - 1e-06 28.0 0.1 0.05 12.6 0.0 4.1 4 0 0 4 4 4 1 AAA ATPase domain AAA_33 PF13671.1 gi|282164713|ref|YP_003357098.1| - 1.1e-06 28.6 0.0 0.051 13.4 0.0 3.3 3 0 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.13 gi|282164713|ref|YP_003357098.1| - 2e-06 27.5 0.0 0.0033 16.9 0.0 2.4 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.1 gi|282164713|ref|YP_003357098.1| - 1.3e-05 26.0 4.4 0.042 14.6 0.0 3.7 4 0 0 4 4 3 2 AAA domain DUF258 PF03193.11 gi|282164713|ref|YP_003357098.1| - 1.5e-05 24.2 0.0 0.096 11.8 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|282164713|ref|YP_003357098.1| - 1.5e-05 24.4 0.0 0.16 11.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|282164713|ref|YP_003357098.1| - 3.8e-05 23.5 0.0 0.52 10.2 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|282164713|ref|YP_003357098.1| - 3.8e-05 24.0 0.8 0.026 14.8 0.2 2.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|282164713|ref|YP_003357098.1| - 4.6e-05 23.5 0.1 0.16 12.1 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|282164713|ref|YP_003357098.1| - 0.00021 21.5 1.9 0.67 10.2 0.0 3.3 3 0 0 3 3 3 2 AAA domain cobW PF02492.14 gi|282164713|ref|YP_003357098.1| - 0.00027 20.4 0.1 0.15 11.4 0.0 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Lar_restr_allev PF14354.1 gi|282164713|ref|YP_003357098.1| - 0.00044 20.4 1.0 0.055 13.7 0.1 3.2 3 0 0 3 3 3 1 Restriction alleviation protein Lar ArgK PF03308.11 gi|282164713|ref|YP_003357098.1| - 0.00048 18.9 0.0 0.26 10.0 0.0 2.5 2 0 0 2 2 2 1 ArgK protein DUF2075 PF09848.4 gi|282164713|ref|YP_003357098.1| - 0.00077 18.5 0.0 0.27 10.1 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|282164713|ref|YP_003357098.1| - 0.0011 18.6 0.0 0.15 11.7 0.0 2.3 2 0 0 2 2 2 1 NACHT domain NB-ARC PF00931.17 gi|282164713|ref|YP_003357098.1| - 0.0014 17.6 2.0 0.82 8.4 0.0 3.7 3 1 1 4 4 4 1 NB-ARC domain MMR_HSR1 PF01926.18 gi|282164713|ref|YP_003357098.1| - 0.002 18.0 0.1 0.13 12.2 0.0 2.8 3 0 0 3 3 2 1 50S ribosome-binding GTPase APS_kinase PF01583.15 gi|282164713|ref|YP_003357098.1| - 0.0021 17.7 0.1 0.86 9.2 0.0 2.5 2 0 0 2 2 2 1 Adenylylsulphate kinase zf-RING_3 PF14369.1 gi|282164713|ref|YP_003357098.1| - 0.0022 17.9 9.3 0.2 11.6 0.2 4.1 4 0 0 4 4 4 1 zinc-finger KaiC PF06745.8 gi|282164713|ref|YP_003357098.1| - 0.003 16.7 0.6 2.8 6.9 0.0 3.0 3 0 0 3 3 3 1 KaiC AAA_30 PF13604.1 gi|282164713|ref|YP_003357098.1| - 0.0037 16.8 0.0 0.93 9.0 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|282164713|ref|YP_003357098.1| - 0.004 16.8 2.4 0.7 9.6 0.1 3.1 3 0 0 3 3 2 1 Part of AAA domain AAA_10 PF12846.2 gi|282164713|ref|YP_003357098.1| - 0.005 16.3 0.0 1.3 8.3 0.0 2.8 3 0 0 3 3 3 1 AAA-like domain T2SE PF00437.15 gi|282164713|ref|YP_003357098.1| - 0.005 15.7 0.1 2.9 6.6 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|282164713|ref|YP_003357098.1| - 0.0059 16.3 0.7 1.7 8.3 0.0 3.0 3 0 0 3 3 3 1 NTPase MobB PF03205.9 gi|282164713|ref|YP_003357098.1| - 0.0063 16.2 0.3 2.2 7.9 0.0 2.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Gtr1_RagA PF04670.7 gi|282164713|ref|YP_003357098.1| - 0.0065 15.6 1.2 3.5 6.6 0.0 4.1 4 1 0 4 4 4 0 Gtr1/RagA G protein conserved region Miro PF08477.8 gi|282164713|ref|YP_003357098.1| - 0.0095 16.4 0.0 1.9 8.9 0.0 2.7 2 0 0 2 2 2 1 Miro-like protein ATP_bind_1 PF03029.12 gi|282164713|ref|YP_003357098.1| - 0.036 13.5 0.3 1.5 8.2 0.0 2.7 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein RNA12 PF10443.4 gi|282164713|ref|YP_003357098.1| - 0.051 12.0 0.1 4.1 5.7 0.0 2.2 2 0 0 2 2 2 0 RNA12 protein DAP3 PF10236.4 gi|282164713|ref|YP_003357098.1| - 0.062 12.2 0.0 6.8 5.5 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_28 PF13521.1 gi|282164713|ref|YP_003357098.1| - 0.072 13.0 1.3 5.7 6.8 0.0 2.7 2 1 0 2 2 2 0 AAA domain Elf1 PF05129.8 gi|282164713|ref|YP_003357098.1| - 0.085 12.5 1.1 0.4 10.4 0.1 2.3 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Zeta_toxin PF06414.7 gi|282164713|ref|YP_003357098.1| - 0.094 11.8 0.0 7 5.6 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin RNA_helicase PF00910.17 gi|282164713|ref|YP_003357098.1| - 0.1 12.7 0.0 12 6.0 0.0 2.5 2 0 0 2 2 2 0 RNA helicase zf-TFIIB PF13453.1 gi|282164713|ref|YP_003357098.1| - 0.11 11.7 11.5 2 7.6 0.0 3.5 3 0 0 3 3 3 0 Transcription factor zinc-finger BCA_ABC_TP_C PF12399.3 gi|282164713|ref|YP_003357098.1| - 0.13 12.0 2.5 0.14 11.9 0.2 2.2 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter KTI12 PF08433.5 gi|282164713|ref|YP_003357098.1| - 0.14 11.3 0.0 14 4.7 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Zn-ribbon_8 PF09723.5 gi|282164713|ref|YP_003357098.1| - 0.19 11.7 8.5 8.6 6.4 1.5 3.7 3 1 1 4 4 4 0 Zinc ribbon domain G-alpha PF00503.15 gi|282164713|ref|YP_003357098.1| - 0.21 10.2 0.0 2.1 6.9 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit PadR PF03551.9 gi|282164714|ref|YP_003357099.1| - 1.2e-13 50.5 0.0 2e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|282164714|ref|YP_003357099.1| - 0.00015 21.4 0.2 0.0024 17.5 0.1 2.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|282164714|ref|YP_003357099.1| - 0.00019 21.3 0.0 0.00034 20.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain FUR PF01475.14 gi|282164714|ref|YP_003357099.1| - 0.07 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_IclR PF09339.5 gi|282164714|ref|YP_003357099.1| - 0.084 12.4 0.1 0.27 10.8 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF1405 PF07187.6 gi|282164717|ref|YP_003357102.1| - 1.7e-33 115.6 25.5 2.8e-33 114.9 17.7 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1405) Hexapep PF00132.19 gi|282164718|ref|YP_003357103.1| - 6.3e-14 50.7 8.6 5e-11 41.5 2.8 2.6 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|282164718|ref|YP_003357103.1| - 1.7e-11 43.4 7.4 3e-09 36.2 3.0 2.7 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase OTCace PF00185.19 gi|282164719|ref|YP_003357104.1| - 1.6e-52 177.5 0.0 2.7e-52 176.8 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|282164719|ref|YP_003357104.1| - 2.1e-52 176.5 0.0 3.4e-52 175.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PALP PF00291.20 gi|282164719|ref|YP_003357104.1| - 0.039 13.1 0.0 0.063 12.5 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme HEAT_2 PF13646.1 gi|282164720|ref|YP_003357105.1| - 3.2e-18 65.8 0.5 1.6e-12 47.4 0.0 2.3 1 1 0 2 2 2 2 HEAT repeats HEAT PF02985.17 gi|282164720|ref|YP_003357105.1| - 2.4e-08 33.3 0.1 0.012 15.5 0.0 3.7 4 0 0 4 4 4 2 HEAT repeat HEAT_EZ PF13513.1 gi|282164720|ref|YP_003357105.1| - 3.6e-08 33.6 0.6 0.003 17.9 0.0 3.0 3 0 0 3 3 3 2 HEAT-like repeat Arm PF00514.18 gi|282164720|ref|YP_003357105.1| - 6.1e-05 22.6 0.1 1.6 8.6 0.0 3.7 4 0 0 4 4 4 2 Armadillo/beta-catenin-like repeat HEAT_PBS PF03130.11 gi|282164720|ref|YP_003357105.1| - 7.3e-05 22.8 2.4 0.74 10.4 1.2 5.1 4 3 0 4 4 4 1 PBS lyase HEAT-like repeat Adaptin_N PF01602.15 gi|282164720|ref|YP_003357105.1| - 0.0098 14.2 0.0 0.027 12.8 0.0 1.8 1 1 0 1 1 1 1 Adaptin N terminal region Cohesin_HEAT PF12765.2 gi|282164720|ref|YP_003357105.1| - 0.025 14.5 0.5 3 7.8 0.1 2.9 2 0 0 2 2 2 0 HEAT repeat associated with sister chromatid cohesion Cnd1 PF12717.2 gi|282164720|ref|YP_003357105.1| - 0.054 13.3 0.0 1.3 8.8 0.0 2.2 1 1 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 AhpC-TSA PF00578.16 gi|282164721|ref|YP_003357106.1| - 6.3e-38 129.2 0.0 9e-38 128.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|282164721|ref|YP_003357106.1| - 1.3e-16 60.4 0.0 1.7e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|282164721|ref|YP_003357106.1| - 2.6e-13 49.3 0.2 6e-13 48.2 0.1 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin DUF641 PF04859.7 gi|282164723|ref|YP_003357108.1| - 0.011 15.5 0.2 0.016 14.9 0.1 1.3 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) TACC PF05010.9 gi|282164723|ref|YP_003357108.1| - 0.028 14.1 1.1 0.033 13.9 0.8 1.1 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) Spc42p PF11544.3 gi|282164723|ref|YP_003357108.1| - 0.083 12.8 0.7 0.21 11.5 0.1 1.8 2 0 0 2 2 2 0 Spindle pole body component Spc42p MerR_1 PF13411.1 gi|282164723|ref|YP_003357108.1| - 0.14 11.9 0.9 0.16 11.7 0.1 1.5 2 0 0 2 2 2 0 MerR HTH family regulatory protein HTH_20 PF12840.2 gi|282164724|ref|YP_003357109.1| - 4.9e-09 35.8 0.3 1.5e-08 34.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|282164724|ref|YP_003357109.1| - 7.3e-08 31.6 0.1 5.1e-07 28.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|282164724|ref|YP_003357109.1| - 1.2e-07 31.2 0.0 2.9e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|282164724|ref|YP_003357109.1| - 6.3e-06 25.7 0.0 1.3e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|282164724|ref|YP_003357109.1| - 2.3e-05 24.6 0.0 6.1e-05 23.2 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|282164724|ref|YP_003357109.1| - 3.3e-05 23.4 0.1 7.5e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|282164724|ref|YP_003357109.1| - 0.00011 21.6 0.0 0.00022 20.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|282164724|ref|YP_003357109.1| - 0.00038 20.1 0.0 0.00069 19.2 0.0 1.4 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|282164724|ref|YP_003357109.1| - 0.00046 19.9 0.0 0.00078 19.2 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.14 gi|282164724|ref|YP_003357109.1| - 0.00068 19.5 0.0 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.11 gi|282164724|ref|YP_003357109.1| - 0.0015 18.0 0.0 0.0037 16.7 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain HTH_12 PF08461.5 gi|282164724|ref|YP_003357109.1| - 0.0036 16.9 0.8 1.4 8.6 0.0 2.7 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain PadR PF03551.9 gi|282164724|ref|YP_003357109.1| - 0.014 15.1 0.3 0.05 13.3 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family Sigma70_r4_2 PF08281.7 gi|282164724|ref|YP_003357109.1| - 0.014 14.8 0.0 0.05 13.0 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_34 PF13601.1 gi|282164724|ref|YP_003357109.1| - 0.021 14.8 0.0 0.044 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|282164724|ref|YP_003357109.1| - 0.022 14.8 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_36 PF13730.1 gi|282164724|ref|YP_003357109.1| - 0.049 13.7 0.0 0.092 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|282164724|ref|YP_003357109.1| - 0.065 12.8 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 HTH domain OPT PF03169.10 gi|282164725|ref|YP_003357110.1| - 1.7e-27 96.1 64.3 2.9e-19 68.9 20.6 2.1 2 0 0 2 2 2 2 OPT oligopeptide transporter protein Peptidase_M50 PF02163.17 gi|282164725|ref|YP_003357110.1| - 0.4 9.6 7.6 1 8.3 0.0 3.5 2 2 0 2 2 2 0 Peptidase family M50 HD_3 PF13023.1 gi|282164726|ref|YP_003357111.1| - 1.5e-56 190.6 0.3 1.7e-56 190.4 0.2 1.0 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|282164726|ref|YP_003357111.1| - 2.3e-06 27.6 0.8 5.1e-06 26.5 0.5 1.5 1 1 0 1 1 1 1 HD domain Nucleoporin2 PF04096.9 gi|282164726|ref|YP_003357111.1| - 0.0055 16.5 0.0 0.0076 16.0 0.0 1.2 1 0 0 1 1 1 1 Nucleoporin autopeptidase DEAD PF00270.24 gi|282164729|ref|YP_003357114.1| - 1.1e-48 164.9 0.0 2.6e-48 163.7 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|282164729|ref|YP_003357114.1| - 9.6e-26 89.4 0.0 2.6e-25 88.0 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Helicase_RecD PF05127.9 gi|282164729|ref|YP_003357114.1| - 0.019 14.5 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Helicase CMS1 PF14617.1 gi|282164729|ref|YP_003357114.1| - 0.027 13.5 0.3 0.063 12.3 0.1 1.6 2 0 0 2 2 2 0 U3-containing 90S pre-ribosomal complex subunit AAA_30 PF13604.1 gi|282164729|ref|YP_003357114.1| - 0.033 13.7 0.0 0.077 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|282164729|ref|YP_003357114.1| - 0.044 13.6 0.0 0.077 12.8 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit SecA_DEAD PF07517.9 gi|282164729|ref|YP_003357114.1| - 0.1 11.8 0.0 0.25 10.6 0.0 1.5 1 1 0 1 1 1 0 SecA DEAD-like domain Prenyltrans_1 PF13243.1 gi|282164730|ref|YP_003357115.1| - 2.6e-30 104.6 0.0 1.9e-24 85.7 0.0 3.3 3 0 0 3 3 3 3 Prenyltransferase-like Prenyltrans_2 PF13249.1 gi|282164730|ref|YP_003357115.1| - 1.8e-13 50.9 0.0 1.4e-08 35.1 0.0 2.8 1 1 1 2 2 2 2 Prenyltransferase-like Fis1_TPR_N PF14852.1 gi|282164730|ref|YP_003357115.1| - 0.044 13.0 0.0 0.092 12.0 0.0 1.6 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat Prenyltrans PF00432.16 gi|282164730|ref|YP_003357115.1| - 0.052 13.1 0.2 0.96 9.0 0.0 3.1 3 0 0 3 3 3 0 Prenyltransferase and squalene oxidase repeat Beta_helix PF13229.1 gi|282164731|ref|YP_003357116.1| - 4.5e-25 88.2 53.0 1.5e-14 54.0 12.1 3.2 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.8 gi|282164731|ref|YP_003357116.1| - 9.7e-22 77.2 30.9 8.3e-16 57.8 8.2 2.5 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) TPR_11 PF13414.1 gi|282164731|ref|YP_003357116.1| - 1.3e-10 40.7 2.8 0.00024 20.6 0.0 3.0 2 1 1 3 3 3 2 TPR repeat TPR_2 PF07719.12 gi|282164731|ref|YP_003357116.1| - 4.6e-07 29.2 5.6 0.012 15.4 0.0 4.6 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282164731|ref|YP_003357116.1| - 4.1e-05 23.4 1.5 0.18 12.0 0.0 4.7 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282164731|ref|YP_003357116.1| - 7.2e-05 23.0 1.1 0.61 10.8 0.1 4.2 1 1 3 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282164731|ref|YP_003357116.1| - 8e-05 22.8 0.4 0.055 13.8 0.1 2.6 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282164731|ref|YP_003357116.1| - 0.0098 15.7 1.1 0.094 12.5 0.1 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282164731|ref|YP_003357116.1| - 0.014 14.9 2.0 0.59 9.8 0.0 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282164731|ref|YP_003357116.1| - 0.069 13.8 2.5 2.5 8.8 0.2 2.8 1 1 2 3 3 3 0 Tetratricopeptide repeat MIT PF04212.13 gi|282164731|ref|YP_003357116.1| - 0.089 12.6 0.1 0.35 10.7 0.1 1.9 1 1 0 1 1 1 0 MIT (microtubule interacting and transport) domain TPR_8 PF13181.1 gi|282164731|ref|YP_003357116.1| - 0.3 10.9 5.2 0.62 9.9 0.1 3.7 3 1 1 4 4 4 0 Tetratricopeptide repeat DUF123 PF01986.11 gi|282164732|ref|YP_003357117.1| - 5.8e-26 90.5 0.0 7.4e-26 90.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 Peptidase_M54 PF07998.6 gi|282164733|ref|YP_003357118.1| - 1.9e-16 60.4 3.9 6.9e-16 58.5 2.7 1.9 1 1 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|282164733|ref|YP_003357118.1| - 0.0042 16.8 0.1 0.005 16.5 0.1 1.3 1 0 0 1 1 1 1 Matrixin zf-4CXXC_R1 PF10497.4 gi|282164733|ref|YP_003357118.1| - 0.013 15.6 0.4 0.019 15.0 0.3 1.2 1 0 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 Reprolysin PF01421.14 gi|282164733|ref|YP_003357118.1| - 0.014 15.0 0.1 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease Metallopep PF12044.3 gi|282164733|ref|YP_003357118.1| - 0.038 12.4 0.3 0.051 12.0 0.2 1.1 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_4 PF13583.1 gi|282164733|ref|YP_003357118.1| - 0.095 12.2 0.3 0.14 11.7 0.1 1.4 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M43 PF05572.8 gi|282164733|ref|YP_003357118.1| - 0.1 12.2 0.4 0.13 11.8 0.3 1.4 1 1 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M66 PF10462.4 gi|282164733|ref|YP_003357118.1| - 0.11 11.4 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 FeoB_N PF02421.13 gi|282164733|ref|YP_003357118.1| - 0.14 11.4 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 Ferrous iron transport protein B PCMT PF01135.14 gi|282164734|ref|YP_003357119.1| - 1e-59 201.6 0.1 1.1e-59 201.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|282164734|ref|YP_003357119.1| - 4.4e-06 26.3 0.0 5.4e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282164734|ref|YP_003357119.1| - 2.4e-05 24.8 0.0 3.2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|282164734|ref|YP_003357119.1| - 0.00025 20.2 0.0 0.0003 19.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.5 gi|282164734|ref|YP_003357119.1| - 0.0027 17.2 0.0 0.0037 16.7 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit MTS PF05175.9 gi|282164734|ref|YP_003357119.1| - 0.013 14.8 0.0 0.029 13.7 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase small domain RrnaAD PF00398.15 gi|282164734|ref|YP_003357119.1| - 0.083 11.9 0.0 0.1 11.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|282164734|ref|YP_003357119.1| - 0.091 11.7 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 Putative methyltransferase SUKH-3 PF14433.1 gi|282164734|ref|YP_003357119.1| - 0.16 11.7 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 SUKH-3 immunity protein DUF2387 PF09526.5 gi|282164735|ref|YP_003357120.1| - 0.002 17.9 0.4 0.0037 17.1 0.3 1.5 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Hormone_6 PF00236.13 gi|282164735|ref|YP_003357120.1| - 0.0065 16.2 0.1 0.011 15.5 0.1 1.4 1 0 0 1 1 1 1 Glycoprotein hormone Zn-ribbon_8 PF09723.5 gi|282164735|ref|YP_003357120.1| - 0.1 12.5 1.6 0.24 11.4 1.1 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF371 PF04027.8 gi|282164736|ref|YP_003357121.1| - 1e-48 164.2 0.1 1.2e-48 164.0 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) TPP_enzyme_M PF00205.17 gi|282164736|ref|YP_003357121.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.3 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Sec62 PF03839.11 gi|282164737|ref|YP_003357122.1| - 0.00061 19.2 0.1 0.00084 18.8 0.1 1.1 1 0 0 1 1 1 1 Translocation protein Sec62 DUF2207 PF09972.4 gi|282164737|ref|YP_003357122.1| - 0.042 12.4 0.0 0.048 12.2 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2361 PF10153.4 gi|282164737|ref|YP_003357122.1| - 0.12 12.5 4.7 0.17 12.1 3.2 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2361) CCDC-167 PF15188.1 gi|282164737|ref|YP_003357122.1| - 0.98 9.4 7.4 1.6 8.7 5.2 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 AAA_13 PF13166.1 gi|282164737|ref|YP_003357122.1| - 1 7.7 4.1 1.2 7.5 2.8 1.0 1 0 0 1 1 1 0 AAA domain DUF350 PF03994.9 gi|282164737|ref|YP_003357122.1| - 1.3 8.7 8.6 28 4.5 6.0 2.9 1 1 0 1 1 1 0 Domain of Unknown Function (DUF350) XhlA PF10779.4 gi|282164737|ref|YP_003357122.1| - 4.5 7.2 6.3 33 4.4 4.2 2.4 1 1 0 1 1 1 0 Haemolysin XhlA RPA_interact_M PF14767.1 gi|282164737|ref|YP_003357122.1| - 9.1 7.1 11.7 91 3.9 8.1 2.0 1 1 0 1 1 1 0 Replication protein A interacting middle HATPase_c PF02518.21 gi|282164738|ref|YP_003357123.1| - 1.6e-19 69.6 0.0 2.9e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|282164738|ref|YP_003357123.1| - 3.6e-16 59.4 0.0 6e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|282164738|ref|YP_003357123.1| - 9.4e-16 57.6 0.0 1.8e-15 56.6 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|282164738|ref|YP_003357123.1| - 1.2e-08 34.9 0.0 2e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.2 gi|282164738|ref|YP_003357123.1| - 2.8e-06 27.3 0.0 7.4e-06 25.9 0.0 1.8 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|282164738|ref|YP_003357123.1| - 4e-06 26.4 0.0 1.1e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 PAS domain DUF4118 PF13493.1 gi|282164738|ref|YP_003357123.1| - 4.1e-05 23.7 8.4 6.3e-05 23.1 5.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HATPase_c_2 PF13581.1 gi|282164738|ref|YP_003357123.1| - 0.0065 16.2 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.1 gi|282164738|ref|YP_003357123.1| - 0.0067 16.6 0.0 0.015 15.5 0.0 1.6 1 0 0 1 1 1 1 PAS domain Peptidase_S8 PF00082.17 gi|282164739|ref|YP_003357124.1| - 7e-69 232.0 14.5 7e-69 232.0 10.1 2.5 2 1 0 2 2 2 1 Subtilase family Inhibitor_I9 PF05922.11 gi|282164739|ref|YP_003357124.1| - 4.5e-07 30.3 1.1 8.8e-07 29.4 0.3 2.0 2 0 0 2 2 2 1 Peptidase inhibitor I9 FlgD_ig PF13860.1 gi|282164739|ref|YP_003357124.1| - 4.8e-06 26.2 0.8 0.062 13.0 0.0 4.1 3 0 0 3 3 3 1 FlgD Ig-like domain PPC PF04151.10 gi|282164739|ref|YP_003357124.1| - 0.0024 18.7 3.6 0.0024 18.7 2.5 4.4 3 1 1 4 4 4 1 Bacterial pre-peptidase C-terminal domain Gmad2 PF10648.4 gi|282164739|ref|YP_003357124.1| - 0.0045 17.1 2.0 2.3 8.4 0.0 4.3 4 0 0 4 4 4 1 Immunoglobulin-like domain of bacterial spore germination Peptidase_M23 PF01551.17 gi|282164739|ref|YP_003357124.1| - 0.0083 16.1 3.3 0.12 12.4 0.0 3.5 3 0 0 3 3 3 1 Peptidase family M23 Inhibitor_I42 PF09394.5 gi|282164739|ref|YP_003357124.1| - 0.021 15.1 3.9 0.056 13.7 0.3 3.1 2 1 0 2 2 2 0 Chagasin family peptidase inhibitor I42 Y_Y_Y PF07495.8 gi|282164739|ref|YP_003357124.1| - 0.028 14.1 0.7 6 6.6 0.0 3.4 3 0 0 3 3 3 0 Y_Y_Y domain CHU_C PF13585.1 gi|282164739|ref|YP_003357124.1| - 0.15 11.9 2.6 11 6.0 0.0 3.4 3 0 0 3 3 3 0 C-terminal domain of CHU protein family CsbD PF05532.7 gi|282164740|ref|YP_003357125.1| - 1.5e-07 30.9 19.1 2.2e-07 30.4 13.2 1.3 1 1 0 1 1 1 1 CsbD-like ATP-synt_DE PF00401.15 gi|282164740|ref|YP_003357125.1| - 0.12 12.2 5.1 0.52 10.2 0.9 2.2 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RmlD_sub_bind PF04321.12 gi|282164741|ref|YP_003357126.1| - 5.4e-46 156.7 0.0 6.2e-46 156.5 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|282164741|ref|YP_003357126.1| - 2e-16 60.1 0.0 2.7e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|282164741|ref|YP_003357126.1| - 5.4e-08 31.8 0.0 8.2e-08 31.2 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|282164741|ref|YP_003357126.1| - 3.8e-06 26.0 0.1 0.0002 20.3 0.0 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|282164741|ref|YP_003357126.1| - 0.00016 20.7 0.0 0.00023 20.1 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein AP_endonuc_2 PF01261.19 gi|282164742|ref|YP_003357127.1| - 2e-24 86.0 0.0 2.7e-24 85.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Abhydrolase_5 PF12695.2 gi|282164743|ref|YP_003357128.1| - 5.3e-14 52.2 0.2 9.7e-14 51.3 0.1 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|282164743|ref|YP_003357128.1| - 1.7e-12 47.7 0.3 2.3e-12 47.3 0.2 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|282164743|ref|YP_003357128.1| - 9.5e-06 25.3 0.0 1.8e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase DUF2206 PF09971.4 gi|282164743|ref|YP_003357128.1| - 0.0099 14.7 3.5 0.0089 14.8 1.4 1.7 1 1 0 1 1 1 1 Predicted membrane protein (DUF2206) Abhydrolase_1 PF00561.15 gi|282164743|ref|YP_003357128.1| - 0.012 15.1 0.7 0.022 14.3 0.5 1.4 1 1 0 1 1 1 0 alpha/beta hydrolase fold Acyl_transf_2 PF02273.10 gi|282164743|ref|YP_003357128.1| - 0.014 14.4 0.0 0.021 13.8 0.0 1.2 1 0 0 1 1 1 0 Acyl transferase DUF915 PF06028.6 gi|282164743|ref|YP_003357128.1| - 0.064 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) CarboxypepD_reg PF13620.1 gi|282164744|ref|YP_003357129.1| - 1.8e-09 37.5 1.4 4.3e-09 36.3 0.0 2.0 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282164744|ref|YP_003357129.1| - 1.2e-07 31.6 0.0 1.7e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|282164744|ref|YP_003357129.1| - 2.6e-06 27.1 0.6 5e-06 26.1 0.4 1.6 1 0 0 1 1 1 1 Cna protein B-type domain phage_tail_N PF08400.5 gi|282164744|ref|YP_003357129.1| - 0.087 12.5 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Prophage tail fibre N-terminal Dioxygenase_C PF00775.16 gi|282164744|ref|YP_003357129.1| - 0.11 11.7 0.1 0.2 10.9 0.0 1.4 1 1 0 1 1 1 0 Dioxygenase GPI-anchored PF10342.4 gi|282164744|ref|YP_003357129.1| - 0.21 12.0 3.2 1 9.8 2.2 2.0 1 1 0 1 1 1 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family COX4_pro_2 PF07835.7 gi|282164744|ref|YP_003357129.1| - 0.22 11.5 1.2 0.35 10.8 0.9 1.3 1 0 0 1 1 1 0 Bacterial aa3 type cytochrome c oxidase subunit IV Ribosomal_60s PF00428.14 gi|282164745|ref|YP_003357130.1| - 2.9e-19 69.2 18.6 3.5e-19 68.9 12.9 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein Shadoo PF14999.1 gi|282164745|ref|YP_003357130.1| - 0.089 12.6 5.7 0.11 12.3 3.9 1.2 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective CAP_N PF01213.14 gi|282164745|ref|YP_003357130.1| - 0.25 10.5 1.6 0.31 10.2 1.1 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal DUF3138 PF11336.3 gi|282164745|ref|YP_003357130.1| - 2 6.5 4.9 2 6.4 3.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) Ribosomal_L10 PF00466.15 gi|282164746|ref|YP_003357131.1| - 7.1e-22 77.2 0.0 2.2e-21 75.6 0.0 1.8 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_L1 PF00687.16 gi|282164747|ref|YP_003357132.1| - 2.9e-47 160.8 0.4 3.3e-47 160.6 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.9 gi|282164748|ref|YP_003357133.1| - 5.2e-26 89.8 0.9 5.2e-26 89.8 0.6 1.7 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|282164748|ref|YP_003357133.1| - 5.3e-19 68.1 0.6 1e-18 67.2 0.4 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Lipocalin_6 PF13944.1 gi|282164748|ref|YP_003357133.1| - 0.19 11.8 2.7 0.31 11.1 1.9 1.4 1 1 0 1 1 1 0 Lipocalin-like domain DUF3467 PF11950.3 gi|282164750|ref|YP_003357135.1| - 0.0074 16.2 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) HTH_Mga PF08280.6 gi|282164750|ref|YP_003357135.1| - 0.029 14.1 0.0 0.074 12.8 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.1 gi|282164750|ref|YP_003357135.1| - 0.039 13.7 0.0 0.08 12.7 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.17 gi|282164750|ref|YP_003357135.1| - 0.081 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 MarR family PLDc_2 PF13091.1 gi|282164752|ref|YP_003357137.1| - 1.1e-12 47.8 0.2 1.5e-12 47.3 0.2 1.2 1 0 0 1 1 1 1 PLD-like domain NMD3 PF04981.8 gi|282164752|ref|YP_003357137.1| - 0.0082 15.2 1.0 0.0082 15.2 0.7 1.8 2 0 0 2 2 2 1 NMD3 family zf-dskA_traR PF01258.12 gi|282164752|ref|YP_003357137.1| - 0.21 11.3 1.2 0.36 10.6 0.9 1.3 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger DUF1232 PF06803.7 gi|282164753|ref|YP_003357138.1| - 2.3e-13 49.3 7.9 2.3e-13 49.3 5.5 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1232) HTH_24 PF13412.1 gi|282164754|ref|YP_003357139.1| - 3.2e-05 23.2 0.0 6.3e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|282164754|ref|YP_003357139.1| - 0.0073 15.9 0.1 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|282164754|ref|YP_003357139.1| - 0.0083 15.7 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|282164754|ref|YP_003357139.1| - 0.0088 15.8 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|282164754|ref|YP_003357139.1| - 0.017 14.6 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain BAR_3_WASP_bdg PF10456.4 gi|282164754|ref|YP_003357139.1| - 0.042 13.1 0.1 0.058 12.6 0.1 1.1 1 0 0 1 1 1 0 WASP-binding domain of Sorting nexin protein Lipoprotein_Ltp PF07553.6 gi|282164754|ref|YP_003357139.1| - 0.053 13.4 0.1 0.15 11.9 0.1 1.8 1 1 0 1 1 1 0 Host cell surface-exposed lipoprotein HTH_AsnC-type PF13404.1 gi|282164754|ref|YP_003357139.1| - 0.053 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF155 PF02582.9 gi|282164754|ref|YP_003357139.1| - 0.055 13.3 0.5 0.3 10.9 0.3 2.0 1 1 0 1 1 1 0 Uncharacterised ACR, YagE family COG1723 HTH_5 PF01022.15 gi|282164754|ref|YP_003357139.1| - 0.056 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|282164754|ref|YP_003357139.1| - 0.057 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB eIF3_p135 PF12807.2 gi|282164754|ref|YP_003357139.1| - 0.067 13.1 0.4 0.084 12.8 0.3 1.4 1 1 0 1 1 1 0 Translation initiation factor eIF3 subunit 135 HTH_9 PF08221.6 gi|282164754|ref|YP_003357139.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF2680 PF10925.3 gi|282164754|ref|YP_003357139.1| - 1.7 8.5 4.1 3.2 7.6 1.3 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2680) DJ-1_PfpI PF01965.19 gi|282164755|ref|YP_003357140.1| - 6.4e-20 71.0 0.0 8.8e-20 70.6 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|282164755|ref|YP_003357140.1| - 1.3e-17 63.5 0.0 1.7e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|282164755|ref|YP_003357140.1| - 0.035 13.6 0.0 0.07 12.7 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF4258 PF14076.1 gi|282164756|ref|YP_003357141.1| - 1.4e-07 31.3 0.1 1.6e-07 31.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) Antitoxin-MazE PF04014.13 gi|282164757|ref|YP_003357142.1| - 8e-12 44.6 1.3 1.2e-11 44.0 0.9 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE zf-TFIIB PF13453.1 gi|282164757|ref|YP_003357142.1| - 8.3e-05 21.6 1.4 0.00016 20.7 1.0 1.5 1 1 0 1 1 1 1 Transcription factor zinc-finger YdjO PF14169.1 gi|282164757|ref|YP_003357142.1| - 0.0032 16.8 2.4 0.02 14.3 0.5 2.2 2 0 0 2 2 2 1 Cold-inducible protein YdjO Rad50_zn_hook PF04423.9 gi|282164757|ref|YP_003357142.1| - 0.0037 16.6 2.8 0.19 11.2 0.1 2.4 1 1 1 2 2 2 2 Rad50 zinc hook motif Nop10p PF04135.7 gi|282164757|ref|YP_003357142.1| - 0.063 13.0 0.3 0.12 12.1 0.1 1.6 1 1 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family SymE_toxin PF08845.5 gi|282164757|ref|YP_003357142.1| - 0.089 12.6 0.1 0.21 11.4 0.0 1.6 2 0 0 2 2 2 0 Toxin SymE, type I toxin-antitoxin system Auto_anti-p27 PF06677.7 gi|282164757|ref|YP_003357142.1| - 0.12 12.1 3.5 6.1 6.6 0.1 2.3 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|282164757|ref|YP_003357142.1| - 0.12 12.1 1.3 0.32 10.8 0.9 1.6 1 1 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|282164757|ref|YP_003357142.1| - 0.18 11.5 1.3 6.7 6.5 0.0 2.6 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Gin PF10764.4 gi|282164757|ref|YP_003357142.1| - 0.22 11.2 3.0 0.44 10.2 2.1 1.6 1 1 0 1 1 1 0 Inhibitor of sigma-G Gin DUF329 PF03884.9 gi|282164757|ref|YP_003357142.1| - 0.29 10.7 1.8 10 5.7 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF329) PhnA_Zn_Ribbon PF08274.7 gi|282164757|ref|YP_003357142.1| - 3.6 7.4 6.2 0.5 10.2 0.8 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon PHO4 PF01384.15 gi|282164758|ref|YP_003357143.1| - 1.6 7.3 11.0 1.9 7.0 7.6 1.2 1 0 0 1 1 1 0 Phosphate transporter family Cytochrom_B_N PF00033.14 gi|282164759|ref|YP_003357144.1| - 0.00015 21.1 3.8 0.00019 20.8 2.7 1.1 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|282164759|ref|YP_003357144.1| - 0.00025 20.4 2.6 0.00031 20.2 1.8 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Scs3p PF10261.4 gi|282164759|ref|YP_003357144.1| - 0.018 14.1 2.3 0.02 13.9 1.6 1.1 1 0 0 1 1 1 0 Inositol phospholipid synthesis and fat-storage-inducing TM DUF4405 PF14358.1 gi|282164759|ref|YP_003357144.1| - 0.051 13.7 7.3 0.062 13.4 5.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4405) YobH PF13996.1 gi|282164759|ref|YP_003357144.1| - 0.077 12.9 0.5 0.077 12.9 0.3 1.5 2 0 0 2 2 2 0 YobH-like protein DUF1774 PF08611.5 gi|282164759|ref|YP_003357144.1| - 0.098 12.8 2.0 0.12 12.5 1.4 1.1 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF1774) DUF2975 PF11188.3 gi|282164759|ref|YP_003357144.1| - 0.63 9.7 4.7 0.78 9.4 3.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF3311 PF11755.3 gi|282164759|ref|YP_003357144.1| - 4.6 6.8 7.4 13 5.4 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3311) Oxidored_molyb PF00174.14 gi|282164760|ref|YP_003357145.1| - 1e-38 132.4 0.0 1.3e-38 132.0 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain UPF0150 PF03681.10 gi|282164761|ref|YP_003357146.1| - 0.059 13.0 0.1 0.081 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) STT3 PF02516.9 gi|282164763|ref|YP_003357148.1| - 0.0031 16.5 0.0 0.0038 16.2 0.0 1.3 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit CBS PF00571.23 gi|282164763|ref|YP_003357148.1| - 0.015 15.0 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 CBS domain Elf1 PF05129.8 gi|282164764|ref|YP_003357149.1| - 0.00082 19.0 6.8 0.019 14.6 0.4 2.3 2 0 0 2 2 2 2 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.5 gi|282164764|ref|YP_003357149.1| - 0.021 14.7 8.2 1 9.3 0.3 3.2 2 1 1 3 3 3 0 Zinc ribbon domain Cytochrome_C7 PF14522.1 gi|282164764|ref|YP_003357149.1| - 0.027 14.1 8.6 3.5 7.3 6.0 2.2 1 1 0 1 1 1 0 Cytochrome c7 TF_Zn_Ribbon PF08271.7 gi|282164764|ref|YP_003357149.1| - 0.028 13.7 6.9 0.7 9.2 0.7 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|282164764|ref|YP_003357149.1| - 0.044 13.4 5.9 1.5 8.5 0.6 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain ArfGap PF01412.13 gi|282164764|ref|YP_003357149.1| - 0.052 13.3 8.7 0.81 9.4 0.8 2.1 1 1 1 2 2 2 0 Putative GTPase activating protein for Arf NMD3 PF04981.8 gi|282164764|ref|YP_003357149.1| - 0.072 12.2 9.0 0.65 9.0 1.3 2.1 1 1 0 2 2 2 0 NMD3 family Tap-RNA_bind PF09162.5 gi|282164764|ref|YP_003357149.1| - 0.074 12.6 0.1 0.099 12.2 0.0 1.3 1 0 0 1 1 1 0 Tap, RNA-binding zf-CHY PF05495.7 gi|282164764|ref|YP_003357149.1| - 0.088 12.9 8.9 11 6.2 6.2 2.3 1 1 0 1 1 1 0 CHY zinc finger Cytochrom_c3_2 PF14537.1 gi|282164764|ref|YP_003357149.1| - 0.12 12.7 7.2 0.22 11.8 5.0 1.5 1 1 0 1 1 1 0 Cytochrome c3 zinc_ribbon_4 PF13717.1 gi|282164764|ref|YP_003357149.1| - 0.13 12.0 13.3 0.14 11.8 1.8 3.6 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|282164764|ref|YP_003357149.1| - 0.15 11.6 13.4 0.22 11.1 2.0 3.6 3 1 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|282164764|ref|YP_003357149.1| - 0.19 10.9 0.2 0.19 10.9 0.2 3.9 3 1 1 4 4 4 0 zinc-ribbon domain zf-MYND PF01753.13 gi|282164764|ref|YP_003357149.1| - 0.41 10.5 5.4 5.8 6.8 0.4 2.6 2 1 0 2 2 2 0 MYND finger zinc_ribbon_2 PF13240.1 gi|282164764|ref|YP_003357149.1| - 0.46 10.0 0.0 0.46 10.0 0.0 3.5 4 0 0 4 4 4 0 zinc-ribbon domain Cytochrom_CIII PF02085.11 gi|282164764|ref|YP_003357149.1| - 0.55 10.3 8.5 11 6.2 5.9 2.1 1 1 0 1 1 1 0 Class III cytochrome C family Cytochrome_C554 PF13435.1 gi|282164764|ref|YP_003357149.1| - 0.58 10.2 7.4 0.34 10.9 3.7 1.6 1 1 0 1 1 1 0 Cytochrome c554 and c-prime zf-ISL3 PF14690.1 gi|282164764|ref|YP_003357149.1| - 0.69 9.9 6.6 1.6 8.8 0.0 3.2 4 0 0 4 4 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|282164764|ref|YP_003357149.1| - 0.72 9.7 12.0 8.5 6.2 1.8 3.2 1 1 1 2 2 2 0 Double zinc ribbon DUF164 PF02591.10 gi|282164764|ref|YP_003357149.1| - 0.93 9.3 10.8 4.7 7.1 2.2 2.9 2 2 1 3 3 3 0 Putative zinc ribbon domain Vps39_2 PF10367.4 gi|282164764|ref|YP_003357149.1| - 1.3 9.2 5.8 3.4 7.8 0.6 2.1 2 0 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 zf-C3HC4_2 PF13923.1 gi|282164764|ref|YP_003357149.1| - 1.3 9.1 5.0 19 5.3 0.4 2.7 2 2 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Stc1 PF12898.2 gi|282164764|ref|YP_003357149.1| - 1.5 8.8 7.9 3.3 7.8 0.7 2.2 1 1 1 2 2 2 0 Stc1 domain DUF2719 PF10891.3 gi|282164764|ref|YP_003357149.1| - 1.5 8.5 7.4 0.2 11.3 0.5 2.5 2 2 1 3 3 3 0 Protein of unknown function (DUF2719) Cytochrom_C PF00034.16 gi|282164764|ref|YP_003357149.1| - 1.6 9.6 5.0 4.8 8.0 3.4 1.8 1 1 0 1 1 1 0 Cytochrome c Zn_Tnp_IS1595 PF12760.2 gi|282164764|ref|YP_003357149.1| - 2.1 8.2 14.5 3.8 7.3 0.1 3.8 2 1 1 3 3 3 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|282164764|ref|YP_003357149.1| - 2.6 7.6 11.3 0.43 10.1 1.2 3.1 2 2 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit C1_4 PF07975.7 gi|282164764|ref|YP_003357149.1| - 2.7 8.0 9.0 7.7 6.6 1.3 2.3 2 0 0 2 2 2 0 TFIIH C1-like domain DUF866 PF05907.8 gi|282164764|ref|YP_003357149.1| - 3.1 7.2 7.7 3.1 7.2 0.4 2.6 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF866) NinF PF05810.7 gi|282164764|ref|YP_003357149.1| - 8.9 6.1 9.1 1.2 8.9 0.5 2.7 2 2 0 2 2 2 0 NinF protein DUF553 PF04473.7 gi|282164765|ref|YP_003357150.1| - 0.0045 16.2 0.0 0.0065 15.7 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.14 gi|282164765|ref|YP_003357150.1| - 0.063 13.4 0.0 0.19 11.9 0.0 1.7 2 0 0 2 2 2 0 Transglutaminase-like superfamily eIF-1a PF01176.14 gi|282164767|ref|YP_003357152.1| - 1.5e-23 81.9 0.3 1.8e-23 81.7 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 zinc_ribbon_6 PF14599.1 gi|282164768|ref|YP_003357153.1| - 0.013 15.2 5.3 0.69 9.7 4.5 2.0 1 1 1 2 2 2 0 Zinc-ribbon C1_1 PF00130.17 gi|282164768|ref|YP_003357153.1| - 0.036 13.7 2.2 0.048 13.3 1.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) LIM PF00412.17 gi|282164768|ref|YP_003357153.1| - 0.15 12.1 3.9 0.2 11.7 2.7 1.2 1 0 0 1 1 1 0 LIM domain ZZ PF00569.12 gi|282164768|ref|YP_003357153.1| - 0.51 9.9 5.3 2.7 7.6 0.5 2.1 2 0 0 2 2 2 0 Zinc finger, ZZ type Zn-ribbon_8 PF09723.5 gi|282164768|ref|YP_003357153.1| - 0.82 9.6 7.6 1.1 9.2 5.3 1.2 1 0 0 1 1 1 0 Zinc ribbon domain PEMT PF04191.8 gi|282164769|ref|YP_003357154.1| - 1.1e-11 44.7 0.4 1.1e-11 44.7 0.2 2.2 3 1 0 3 3 3 1 Phospholipid methyltransferase ICMT PF04140.9 gi|282164769|ref|YP_003357154.1| - 8.4e-09 35.5 0.3 2.2e-08 34.1 0.0 1.9 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF1295 PF06966.7 gi|282164769|ref|YP_003357154.1| - 3.7e-05 23.1 1.5 6.2e-05 22.3 1.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1295) NnrU PF07298.6 gi|282164769|ref|YP_003357154.1| - 0.0001 21.7 0.5 0.0001 21.7 0.3 2.1 1 1 1 2 2 2 1 NnrU protein ERG4_ERG24 PF01222.12 gi|282164769|ref|YP_003357154.1| - 0.00012 20.7 0.0 0.00023 19.8 0.0 1.4 1 0 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family Steroid_dh PF02544.11 gi|282164769|ref|YP_003357154.1| - 0.0017 18.1 0.0 0.0032 17.2 0.0 1.5 1 0 0 1 1 1 1 3-oxo-5-alpha-steroid 4-dehydrogenase TctB PF07331.6 gi|282164769|ref|YP_003357154.1| - 0.02 14.5 11.6 0.043 13.4 1.2 2.8 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family YwiC PF14256.1 gi|282164769|ref|YP_003357154.1| - 0.53 10.3 16.3 2.5 8.2 3.0 2.3 1 1 1 2 2 2 0 YwiC-like protein DUF4131 PF13567.1 gi|282164769|ref|YP_003357154.1| - 2.8 7.3 13.0 3.7 6.9 1.8 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF3784 PF12650.2 gi|282164769|ref|YP_003357154.1| - 7.9 6.4 8.7 12 5.9 0.5 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3784) DUF2892 PF11127.3 gi|282164770|ref|YP_003357155.1| - 1.8e-10 40.4 2.4 2.1e-10 40.2 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Claudin_3 PF06653.6 gi|282164770|ref|YP_003357155.1| - 0.048 13.3 0.2 0.05 13.3 0.1 1.0 1 0 0 1 1 1 0 Tight junction protein, Claudin-like PIRT PF15099.1 gi|282164770|ref|YP_003357155.1| - 0.093 11.9 1.7 0.12 11.6 1.2 1.1 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family PrgI PF12666.2 gi|282164770|ref|YP_003357155.1| - 0.2 11.8 1.4 0.22 11.6 1.0 1.1 1 0 0 1 1 1 0 PrgI family protein DUF2701 PF10857.3 gi|282164770|ref|YP_003357155.1| - 1.2 8.9 3.3 1.6 8.5 2.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2701) DUF1059 PF06348.6 gi|282164771|ref|YP_003357156.1| - 2.5e-09 36.8 0.5 3e-09 36.5 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) DUF2553 PF10830.3 gi|282164772|ref|YP_003357157.1| - 0.29 11.6 1.6 4.6 7.8 1.1 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2553) VPS11_C PF12451.3 gi|282164776|ref|YP_003357161.1| - 0.13 12.0 0.1 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Vacuolar protein sorting protein 11 C terminal IncA PF04156.9 gi|282164777|ref|YP_003357162.1| - 0.12 11.9 0.3 0.17 11.4 0.2 1.2 1 0 0 1 1 1 0 IncA protein Ferritin PF00210.19 gi|282164779|ref|YP_003357164.1| - 6.3e-29 100.5 0.6 6.9e-29 100.4 0.4 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|282164779|ref|YP_003357164.1| - 0.00038 20.8 3.9 0.0012 19.2 2.6 1.9 1 1 0 1 1 1 1 Rubrerythrin RBFA PF02033.13 gi|282164779|ref|YP_003357164.1| - 0.021 14.8 0.3 0.099 12.6 0.0 2.0 2 0 0 2 2 2 0 Ribosome-binding factor A MIP PF00230.15 gi|282164780|ref|YP_003357165.1| - 6.9e-53 179.4 19.4 7.7e-53 179.2 13.4 1.0 1 0 0 1 1 1 1 Major intrinsic protein NADH_dh_m_C1 PF15088.1 gi|282164780|ref|YP_003357165.1| - 0.084 12.3 0.9 0.25 10.8 0.1 2.2 2 0 0 2 2 2 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial FKBP_C PF00254.23 gi|282164781|ref|YP_003357166.1| - 5.7e-22 77.5 0.0 8.3e-22 77.0 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Abhydrolase_6 PF12697.2 gi|282164783|ref|YP_003357168.1| - 1.5e-22 80.5 0.0 1.8e-22 80.3 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|282164783|ref|YP_003357168.1| - 3.9e-11 42.8 0.0 5.6e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|282164783|ref|YP_003357168.1| - 9.1e-08 31.9 0.0 3.3e-07 30.1 0.0 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.8 gi|282164783|ref|YP_003357168.1| - 0.0024 17.4 0.0 0.0053 16.3 0.0 1.5 1 1 0 2 2 2 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|282164783|ref|YP_003357168.1| - 0.024 13.8 0.0 0.71 9.0 0.0 2.2 2 0 0 2 2 2 0 Prolyl oligopeptidase family Abhydrolase_4 PF08386.5 gi|282164783|ref|YP_003357168.1| - 0.18 11.7 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein DUF2920 PF11144.3 gi|282164783|ref|YP_003357168.1| - 0.21 10.5 0.0 0.26 10.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) zf-ribbon_3 PF13248.1 gi|282164784|ref|YP_003357169.1| - 0.0002 20.4 1.9 0.00031 19.8 1.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|282164784|ref|YP_003357169.1| - 0.0065 16.2 0.2 0.0095 15.7 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-CHCC PF10276.4 gi|282164784|ref|YP_003357169.1| - 0.015 15.1 0.4 0.067 13.0 0.0 2.0 2 0 0 2 2 2 0 Zinc-finger domain Prok-RING_1 PF14446.1 gi|282164784|ref|YP_003357169.1| - 0.022 14.4 1.6 0.037 13.7 1.1 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_5 PF13719.1 gi|282164784|ref|YP_003357169.1| - 0.031 13.8 0.4 0.6 9.7 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Coronavirus_5 PF05528.6 gi|282164784|ref|YP_003357169.1| - 0.049 13.4 0.0 0.081 12.7 0.0 1.4 1 0 0 1 1 1 0 Coronavirus gene 5 protein zinc_ribbon_2 PF13240.1 gi|282164784|ref|YP_003357169.1| - 0.054 13.0 2.6 0.3 10.6 2.4 1.7 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|282164784|ref|YP_003357169.1| - 0.093 12.4 0.3 1.9 8.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|282164784|ref|YP_003357169.1| - 0.11 12.2 4.2 0.17 11.5 2.9 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF164 PF02591.10 gi|282164784|ref|YP_003357169.1| - 0.18 11.6 2.3 2.1 8.2 0.1 2.3 1 1 1 2 2 2 0 Putative zinc ribbon domain Auto_anti-p27 PF06677.7 gi|282164784|ref|YP_003357169.1| - 0.25 11.1 2.6 4.6 7.0 0.2 2.6 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.2 gi|282164784|ref|YP_003357169.1| - 0.43 10.4 2.3 3.1 7.6 0.0 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-CSL PF05207.8 gi|282164784|ref|YP_003357169.1| - 0.45 10.0 2.9 0.53 9.8 0.1 2.4 1 1 1 2 2 2 0 CSL zinc finger TF_Zn_Ribbon PF08271.7 gi|282164784|ref|YP_003357169.1| - 1.3 8.3 4.3 3.5 7.0 3.0 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C2HC_2 PF13913.1 gi|282164784|ref|YP_003357169.1| - 5.2 6.8 6.8 1.4 8.6 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type MdcG PF10620.4 gi|282164785|ref|YP_003357170.1| - 0.085 12.3 0.4 0.1 12.1 0.3 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG CarboxypepD_reg PF13620.1 gi|282164786|ref|YP_003357171.1| - 3.5e-09 36.6 5.6 1.2e-08 34.9 0.2 3.5 3 1 1 4 4 4 1 Carboxypeptidase regulatory-like domain Dioxygenase_C PF00775.16 gi|282164786|ref|YP_003357171.1| - 2.6e-07 30.0 0.2 8.9e-06 25.0 0.2 2.3 1 1 0 1 1 1 1 Dioxygenase DUF4480 PF13715.1 gi|282164786|ref|YP_003357171.1| - 0.00012 22.0 0.0 0.0017 18.3 0.0 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4480) phage_tail_N PF08400.5 gi|282164786|ref|YP_003357171.1| - 0.068 12.8 0.1 0.19 11.4 0.0 1.8 2 0 0 2 2 2 0 Prophage tail fibre N-terminal zf-ribbon_3 PF13248.1 gi|282164787|ref|YP_003357172.1| - 0.00081 18.5 0.3 0.0012 17.9 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|282164787|ref|YP_003357172.1| - 0.0022 17.4 0.9 0.0039 16.6 0.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|282164787|ref|YP_003357172.1| - 0.0029 17.3 0.2 0.0042 16.8 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-P11 PF03854.9 gi|282164787|ref|YP_003357172.1| - 0.033 13.6 0.3 0.053 13.0 0.2 1.3 1 0 0 1 1 1 0 P-11 zinc finger Lar_restr_allev PF14354.1 gi|282164787|ref|YP_003357172.1| - 0.052 13.8 1.0 8.6 6.7 0.0 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar Dala_Dala_lig_C PF07478.8 gi|282164787|ref|YP_003357172.1| - 0.08 12.3 0.1 0.17 11.2 0.0 1.5 2 0 0 2 2 2 0 D-ala D-ala ligase C-terminus RecR PF02132.10 gi|282164787|ref|YP_003357172.1| - 0.16 11.4 1.2 0.21 11.0 0.3 1.6 2 0 0 2 2 2 0 RecR protein zf-NADH-PPase PF09297.6 gi|282164787|ref|YP_003357172.1| - 0.26 10.8 1.4 0.89 9.1 0.2 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Rad50_zn_hook PF04423.9 gi|282164787|ref|YP_003357172.1| - 0.86 9.1 5.7 0.41 10.1 1.8 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif Ferritin PF00210.19 gi|282164788|ref|YP_003357173.1| - 8e-11 41.8 0.3 1.3e-10 41.1 0.2 1.4 1 1 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|282164788|ref|YP_003357173.1| - 3.7e-07 30.5 0.0 5.3e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|282164788|ref|YP_003357173.1| - 1.1e-05 25.3 0.0 1.2e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Ferritin-like PF12902.2 gi|282164788|ref|YP_003357173.1| - 0.0008 19.0 0.0 0.00082 19.0 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like COQ7 PF03232.8 gi|282164788|ref|YP_003357173.1| - 0.0019 17.7 0.1 0.055 12.9 0.0 2.0 2 0 0 2 2 2 1 Ubiquinone biosynthesis protein COQ7 DUF2383 PF09537.5 gi|282164788|ref|YP_003357173.1| - 0.013 15.6 0.1 0.039 14.2 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) Mn_catalase PF05067.7 gi|282164788|ref|YP_003357173.1| - 0.1 11.3 0.1 0.24 10.1 0.0 1.6 2 0 0 2 2 2 0 Manganese containing catalase DUF308 PF03729.8 gi|282164789|ref|YP_003357174.1| - 7.7e-22 77.0 57.0 1.9e-12 46.9 9.2 3.2 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) Cys_rich_KTR PF14205.1 gi|282164790|ref|YP_003357175.1| - 0.091 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Cysteine-rich KTR DUF1059 PF06348.6 gi|282164791|ref|YP_003357176.1| - 4.1e-07 29.7 0.1 4.3e-07 29.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) PLRV_ORF5 PF01690.12 gi|282164792|ref|YP_003357177.1| - 0.73 8.9 5.7 1 8.4 4.0 1.3 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Aldo_ket_red PF00248.16 gi|282164794|ref|YP_003357179.1| - 7.4e-47 159.5 0.0 9.6e-47 159.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|282164794|ref|YP_003357179.1| - 5.8e-09 36.1 12.8 1.4e-08 34.9 8.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282164794|ref|YP_003357179.1| - 2.8e-07 30.7 14.8 5.1e-07 29.8 10.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282164794|ref|YP_003357179.1| - 2.2e-06 27.9 4.6 0.0035 17.7 1.1 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282164794|ref|YP_003357179.1| - 8.2e-06 25.7 12.2 1.5e-05 24.8 8.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282164794|ref|YP_003357179.1| - 0.00097 18.8 14.6 0.0022 17.7 10.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282164794|ref|YP_003357179.1| - 0.002 17.6 3.7 0.002 17.6 2.6 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282164794|ref|YP_003357179.1| - 0.024 15.3 7.2 0.47 11.2 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|282164794|ref|YP_003357179.1| - 0.026 14.9 14.7 0.12 12.7 10.2 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|282164794|ref|YP_003357179.1| - 0.33 11.6 14.3 0.068 13.7 2.7 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282164794|ref|YP_003357179.1| - 0.53 10.3 16.3 0.31 11.0 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|282164794|ref|YP_003357179.1| - 1 9.0 10.0 0.4 10.3 1.0 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.2 gi|282164794|ref|YP_003357179.1| - 1.6 9.2 15.9 2.3 8.7 2.6 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain DNA_primase_S PF01896.14 gi|282164795|ref|YP_003357180.1| - 1.1e-06 28.5 0.0 1.7e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit DUF348 PF03990.9 gi|282164795|ref|YP_003357180.1| - 0.098 12.2 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF348) DNA_ligase_A_M PF01068.16 gi|282164796|ref|YP_003357181.1| - 1.4e-30 106.2 0.0 1.9e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.10 gi|282164796|ref|YP_003357181.1| - 1.7e-29 102.0 0.0 3e-29 101.2 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|282164796|ref|YP_003357181.1| - 2.8e-06 27.1 0.1 0.28 10.8 0.0 3.1 3 0 0 3 3 3 3 mRNA capping enzyme, catalytic domain LigD_N PF13298.1 gi|282164797|ref|YP_003357182.1| - 3.4e-43 146.0 0.0 8.9e-43 144.6 0.0 1.6 2 0 0 2 2 2 1 DNA polymerase Ligase (LigD) DUF3006 PF11213.3 gi|282164798|ref|YP_003357183.1| - 2.5e-20 72.0 0.3 2.9e-20 71.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) FYVE_2 PF02318.11 gi|282164798|ref|YP_003357183.1| - 0.082 12.8 0.1 0.11 12.4 0.1 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger S1_2 PF13509.1 gi|282164798|ref|YP_003357183.1| - 0.13 12.2 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 S1 domain Lactamase_B PF00753.22 gi|282164799|ref|YP_003357184.1| - 2.3e-13 50.2 0.2 6.9e-13 48.6 0.2 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|282164799|ref|YP_003357184.1| - 0.00022 20.9 0.1 0.00034 20.3 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|282164799|ref|YP_003357184.1| - 0.001 18.6 0.0 0.0025 17.4 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KaiC PF06745.8 gi|282164800|ref|YP_003357185.1| - 1.4e-109 364.5 2.4 3.8e-68 228.9 0.0 2.5 3 0 0 3 3 3 2 KaiC AAA_25 PF13481.1 gi|282164800|ref|YP_003357185.1| - 4.7e-25 88.1 0.4 5.6e-13 48.7 0.0 3.1 3 0 0 3 3 3 2 AAA domain GvpD PF07088.6 gi|282164800|ref|YP_003357185.1| - 1e-08 34.0 0.1 5.2e-05 21.7 0.0 2.9 3 0 0 3 3 3 2 GvpD gas vesicle protein AAA_19 PF13245.1 gi|282164800|ref|YP_003357185.1| - 1.5e-07 31.0 0.0 0.02 14.6 0.0 2.4 2 0 0 2 2 2 2 Part of AAA domain RecA PF00154.16 gi|282164800|ref|YP_003357185.1| - 1.7e-07 30.6 0.1 0.0019 17.3 0.0 2.3 2 0 0 2 2 2 2 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|282164800|ref|YP_003357185.1| - 1.9e-07 30.6 0.0 0.00055 19.3 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein CobU PF02283.11 gi|282164800|ref|YP_003357185.1| - 8.1e-06 25.3 0.1 0.058 12.8 0.0 2.5 2 0 0 2 2 2 2 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_16 PF13191.1 gi|282164800|ref|YP_003357185.1| - 1.2e-05 25.3 0.0 0.0015 18.5 0.0 2.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|282164800|ref|YP_003357185.1| - 1.6e-05 24.5 0.1 0.065 12.6 0.0 2.9 2 1 0 3 3 3 2 AAA-like domain NACHT PF05729.7 gi|282164800|ref|YP_003357185.1| - 2e-05 24.3 0.0 0.032 13.8 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_22 PF13401.1 gi|282164800|ref|YP_003357185.1| - 2.9e-05 24.1 0.3 0.033 14.3 0.0 2.7 2 1 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|282164800|ref|YP_003357185.1| - 3.6e-05 23.3 0.1 0.032 13.6 0.0 3.1 3 1 0 3 3 3 1 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|282164800|ref|YP_003357185.1| - 4.2e-05 23.4 0.0 0.13 12.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain DnaB_C PF03796.10 gi|282164800|ref|YP_003357185.1| - 0.00019 20.3 0.0 0.29 10.0 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain Sigma54_activat PF00158.21 gi|282164800|ref|YP_003357185.1| - 0.00064 19.2 0.0 0.11 11.9 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_29 PF13555.1 gi|282164800|ref|YP_003357185.1| - 0.0017 17.8 2.0 0.95 9.0 0.4 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|282164800|ref|YP_003357185.1| - 0.0021 17.6 0.1 0.056 13.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|282164800|ref|YP_003357185.1| - 0.0023 16.9 3.7 0.54 9.1 0.0 3.0 3 0 0 3 3 3 2 Uncharacterized conserved protein (DUF2075) PAXNEB PF05625.6 gi|282164800|ref|YP_003357185.1| - 0.0025 16.7 0.9 0.019 13.8 0.1 2.1 2 0 0 2 2 2 1 PAXNEB protein AAA_30 PF13604.1 gi|282164800|ref|YP_003357185.1| - 0.0031 17.1 0.0 0.28 10.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.4 gi|282164800|ref|YP_003357185.1| - 0.011 14.3 0.1 0.44 9.0 0.0 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|282164800|ref|YP_003357185.1| - 0.013 14.4 0.0 4.1 6.2 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|282164800|ref|YP_003357185.1| - 0.02 14.4 0.0 3.2 7.1 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Zot PF05707.7 gi|282164800|ref|YP_003357185.1| - 0.021 14.3 0.0 5.6 6.3 0.0 2.4 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) PhoH PF02562.11 gi|282164800|ref|YP_003357185.1| - 0.024 13.8 1.7 7.4 5.7 0.0 3.2 4 0 0 4 4 3 0 PhoH-like protein DUF2201 PF09967.4 gi|282164800|ref|YP_003357185.1| - 0.026 14.5 0.5 0.061 13.3 0.0 1.8 2 0 0 2 2 1 0 VWA-like domain (DUF2201) AAA_18 PF13238.1 gi|282164800|ref|YP_003357185.1| - 0.03 14.6 1.0 0.88 9.8 0.0 3.1 3 0 0 3 3 2 0 AAA domain RNA_helicase PF00910.17 gi|282164800|ref|YP_003357185.1| - 0.075 13.2 0.0 17 5.6 0.0 2.7 2 0 0 2 2 2 0 RNA helicase MobB PF03205.9 gi|282164800|ref|YP_003357185.1| - 0.098 12.3 0.2 1 9.0 0.0 2.7 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|282164800|ref|YP_003357185.1| - 0.21 12.4 0.0 0.21 12.4 0.0 3.4 3 1 0 3 3 2 0 AAA domain UvrD-helicase PF00580.16 gi|282164800|ref|YP_003357185.1| - 0.87 8.8 0.0 0.87 8.8 0.0 2.5 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain ATP_bind_1 PF03029.12 gi|282164800|ref|YP_003357185.1| - 1.6 8.1 5.7 5.9 6.3 0.0 3.0 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.1 gi|282164800|ref|YP_003357185.1| - 5.9 7.1 13.1 4.8 7.4 1.6 3.3 3 0 0 3 3 3 0 AAA domain DUF87 PF01935.12 gi|282164800|ref|YP_003357185.1| - 6.8 6.4 7.1 2.4 7.9 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function DUF87 KaiB PF07689.7 gi|282164801|ref|YP_003357186.1| - 2.4e-25 87.8 0.1 2.9e-25 87.5 0.1 1.1 1 0 0 1 1 1 1 KaiB domain ACT_5 PF13710.1 gi|282164801|ref|YP_003357186.1| - 0.069 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 ACT domain HATPase_c PF02518.21 gi|282164802|ref|YP_003357187.1| - 5.2e-21 74.4 0.0 1.3e-20 73.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|282164802|ref|YP_003357187.1| - 8.9e-17 61.1 0.0 2.4e-16 59.7 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|282164802|ref|YP_003357187.1| - 7.8e-07 28.8 0.9 3.7e-06 26.6 0.0 2.6 3 1 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.1 gi|282164802|ref|YP_003357187.1| - 5e-06 26.1 0.0 1.2e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_9 PF13426.1 gi|282164802|ref|YP_003357187.1| - 6.4e-05 23.2 1.4 0.0098 16.2 0.0 4.2 4 2 2 6 6 6 1 PAS domain PAS_8 PF13188.1 gi|282164802|ref|YP_003357187.1| - 0.00023 20.9 0.0 0.00083 19.1 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|282164802|ref|YP_003357187.1| - 0.0031 17.5 0.0 0.012 15.6 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|282164802|ref|YP_003357187.1| - 0.0065 16.1 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|282164802|ref|YP_003357187.1| - 0.0075 16.0 0.0 0.03 14.1 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain CsrA PF02599.11 gi|282164802|ref|YP_003357187.1| - 0.029 14.0 1.2 0.11 12.1 0.0 2.6 3 0 0 3 3 3 0 Global regulator protein family APG6 PF04111.7 gi|282164802|ref|YP_003357187.1| - 2.2 7.2 8.1 3.5 6.5 5.6 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 KaiB PF07689.7 gi|282164803|ref|YP_003357188.1| - 2.5e-22 78.1 0.1 3.9e-22 77.5 0.1 1.3 1 0 0 1 1 1 1 KaiB domain HALZ PF02183.13 gi|282164803|ref|YP_003357188.1| - 0.00015 21.3 1.5 0.00038 20.1 1.0 1.7 1 0 0 1 1 1 1 Homeobox associated leucine zipper DUF972 PF06156.8 gi|282164803|ref|YP_003357188.1| - 0.0072 16.6 0.5 0.013 15.8 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF972) Herpes_BLRF2 PF05812.7 gi|282164803|ref|YP_003357188.1| - 0.042 13.6 1.5 0.073 12.8 1.0 1.4 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein NYD-SP28_assoc PF14775.1 gi|282164803|ref|YP_003357188.1| - 0.056 13.1 0.9 0.1 12.2 0.6 1.4 1 0 0 1 1 1 0 Sperm tail C-terminal domain Thioredoxin PF00085.15 gi|282164803|ref|YP_003357188.1| - 0.072 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin KIAA1430 PF13879.1 gi|282164803|ref|YP_003357188.1| - 0.089 13.2 1.1 0.14 12.5 0.8 1.3 1 0 0 1 1 1 0 KIAA1430 homologue DivIVA PF05103.8 gi|282164803|ref|YP_003357188.1| - 0.092 12.8 1.0 0.18 11.8 0.7 1.4 1 0 0 1 1 1 0 DivIVA protein Ste50p-SAM PF09235.5 gi|282164803|ref|YP_003357188.1| - 0.12 12.3 0.2 0.23 11.4 0.2 1.5 1 0 0 1 1 1 0 Ste50p, sterile alpha motif Spt5-NGN PF03439.8 gi|282164804|ref|YP_003357189.1| - 2e-23 81.9 0.6 3.4e-23 81.2 0.4 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|282164804|ref|YP_003357189.1| - 4.9e-08 32.3 1.3 5.7e-07 29.0 0.1 2.4 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|282164804|ref|YP_003357189.1| - 0.00057 20.0 0.4 0.0019 18.3 0.1 2.0 2 1 0 2 2 2 1 Transcription termination factor nusG SecE PF00584.15 gi|282164805|ref|YP_003357190.1| - 0.002 17.6 1.0 0.0022 17.5 0.7 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex tRNA_deacylase PF04414.7 gi|282164806|ref|YP_003357191.1| - 4.1e-64 215.6 0.0 7.8e-64 214.7 0.0 1.5 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Tubulin PF00091.20 gi|282164806|ref|YP_003357191.1| - 1.2e-35 123.3 0.3 3.1e-35 121.9 0.2 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|282164806|ref|YP_003357191.1| - 7.8e-32 109.2 3.3 1.7e-31 108.1 1.5 2.3 2 0 0 2 2 2 1 FtsZ family, C-terminal domain PIG-L PF02585.12 gi|282164807|ref|YP_003357192.1| - 1.4e-13 51.4 0.2 1e-12 48.6 0.1 2.2 1 1 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glyco_trans_4_2 PF13477.1 gi|282164807|ref|YP_003357192.1| - 5e-05 23.1 0.0 8.3e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Oxidored_nitro PF00148.14 gi|282164807|ref|YP_003357192.1| - 0.025 13.2 0.0 0.035 12.7 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase zf-CDGSH PF09360.5 gi|282164809|ref|YP_003357194.1| - 2.3e-32 110.5 5.6 4.7e-16 58.3 0.2 2.5 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.6 gi|282164809|ref|YP_003357194.1| - 7.4e-08 32.0 0.0 5.1e-07 29.4 0.0 2.2 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster Chisel PF15355.1 gi|282164809|ref|YP_003357194.1| - 0.087 12.8 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Stretch-responsive small skeletal muscle X protein, Chisel Hpt PF01627.18 gi|282164810|ref|YP_003357195.1| - 0.078 12.9 0.5 6.7 6.7 0.0 2.4 2 0 0 2 2 2 0 Hpt domain FCD PF07729.7 gi|282164810|ref|YP_003357195.1| - 0.28 11.4 2.2 0.51 10.6 0.1 2.0 1 1 1 2 2 2 0 FCD domain HAMP PF00672.20 gi|282164810|ref|YP_003357195.1| - 3.1 8.0 4.8 3.8 7.7 0.7 2.5 3 0 0 3 3 3 0 HAMP domain IF-2B PF01008.12 gi|282164812|ref|YP_003357197.1| - 2.4e-89 299.0 1.9 2.8e-89 298.8 1.3 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Tub_2 PF04525.7 gi|282164814|ref|YP_003357199.1| - 5.4e-05 22.6 0.5 0.0027 17.1 0.1 2.1 1 1 1 2 2 2 2 Tubby C 2 ACC_epsilon PF13822.1 gi|282164816|ref|YP_003357201.1| - 0.14 12.5 1.1 0.25 11.7 0.7 1.4 1 0 0 1 1 1 0 Acyl-CoA carboxylase epsilon subunit Mem_trans PF03547.13 gi|282164818|ref|YP_003357203.1| - 9.9e-24 83.3 31.3 3.8e-12 45.2 7.7 2.0 1 1 1 2 2 2 2 Membrane transport protein Abi PF02517.11 gi|282164818|ref|YP_003357203.1| - 2.7 8.2 14.8 1 9.5 1.1 3.2 2 2 1 3 3 3 0 CAAX protease self-immunity Tic20 PF09685.5 gi|282164819|ref|YP_003357204.1| - 3.5e-12 46.2 6.5 4.1e-12 46.0 4.5 1.0 1 0 0 1 1 1 1 Tic20-like protein DctQ PF04290.7 gi|282164819|ref|YP_003357204.1| - 0.58 9.9 0.1 0.58 9.9 0.0 2.3 1 1 1 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF2207 PF09972.4 gi|282164819|ref|YP_003357204.1| - 0.66 8.4 4.2 0.72 8.3 2.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PAP2 PF01569.16 gi|282164819|ref|YP_003357204.1| - 1.6 8.3 7.0 0.41 10.3 2.6 1.7 1 1 1 2 2 2 0 PAP2 superfamily DUF1774 PF08611.5 gi|282164819|ref|YP_003357204.1| - 3 8.0 8.7 10 6.3 2.9 2.1 2 0 0 2 2 2 0 Fungal protein of unknown function (DUF1774) FHIPEP PF00771.15 gi|282164819|ref|YP_003357204.1| - 7.9 4.6 6.5 9.2 4.4 4.5 1.1 1 0 0 1 1 1 0 FHIPEP family Peptidase_M22 PF00814.20 gi|282164820|ref|YP_003357205.1| - 6.9e-83 278.2 0.1 7.9e-83 278.0 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family CmcH_NodU PF02543.10 gi|282164820|ref|YP_003357205.1| - 0.13 11.3 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Carbamoyltransferase RIO1 PF01163.17 gi|282164821|ref|YP_003357206.1| - 5e-11 42.2 0.0 8.1e-11 41.6 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|282164821|ref|YP_003357206.1| - 1.6e-10 41.1 0.0 2.2e-06 27.5 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|282164821|ref|YP_003357206.1| - 7.7e-06 25.2 0.0 2.7e-05 23.4 0.0 1.9 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|282164821|ref|YP_003357206.1| - 5.5e-05 22.3 0.1 0.001 18.2 0.1 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.12 gi|282164821|ref|YP_003357206.1| - 0.0012 17.9 0.0 0.0046 16.0 0.0 1.9 1 1 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.6 gi|282164821|ref|YP_003357206.1| - 0.0019 17.4 0.1 0.0029 16.8 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) EcKinase PF02958.15 gi|282164821|ref|YP_003357206.1| - 0.0038 16.4 0.0 0.0053 15.9 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase Na_Ca_ex PF01699.19 gi|282164822|ref|YP_003357207.1| - 1.2e-48 164.2 33.9 2.1e-24 85.7 8.6 2.3 2 1 0 2 2 2 2 Sodium/calcium exchanger protein GMAP PF06540.6 gi|282164822|ref|YP_003357207.1| - 0.1 12.3 0.1 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Galanin message associated peptide (GMAP) ATP_bind_4 PF01902.12 gi|282164823|ref|YP_003357208.1| - 1.9e-69 233.3 0.0 2.1e-69 233.2 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|282164823|ref|YP_003357208.1| - 0.0058 16.1 0.0 0.018 14.5 0.0 1.7 1 1 1 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|282164823|ref|YP_003357208.1| - 0.13 11.4 0.0 0.38 10.0 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC RHH_1 PF01402.16 gi|282164823|ref|YP_003357208.1| - 0.13 12.1 0.1 0.6 10.0 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Amidohydro_1 PF01979.15 gi|282164824|ref|YP_003357209.1| - 4.8e-32 111.9 0.1 6e-32 111.6 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|282164824|ref|YP_003357209.1| - 0.0035 17.1 0.1 0.016 14.9 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|282164824|ref|YP_003357209.1| - 0.0036 17.3 0.0 1 9.3 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase A_deaminase PF00962.17 gi|282164824|ref|YP_003357209.1| - 0.0044 15.9 0.0 0.0076 15.2 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|282164824|ref|YP_003357209.1| - 0.012 14.8 0.6 0.22 10.7 0.1 2.3 2 1 0 2 2 2 0 Amidohydrolase family Cytochrom_NNT PF03264.9 gi|282164824|ref|YP_003357209.1| - 0.031 13.7 0.0 0.049 13.0 0.0 1.2 1 0 0 1 1 1 0 NapC/NirT cytochrome c family, N-terminal region MFS_1 PF07690.11 gi|282164825|ref|YP_003357210.1| - 9.4e-60 202.1 54.9 2.6e-42 144.8 16.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|282164825|ref|YP_003357210.1| - 6.6e-12 44.5 34.7 5.2e-08 31.7 9.7 2.1 1 1 0 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|282164825|ref|YP_003357210.1| - 7.6e-10 37.9 32.9 2.1e-08 33.2 7.3 3.2 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|282164825|ref|YP_003357210.1| - 1.9e-09 36.2 32.3 2.2e-08 32.6 22.4 2.0 1 1 0 1 1 1 1 Transmembrane secretion effector LacY_symp PF01306.14 gi|282164825|ref|YP_003357210.1| - 5.4e-08 31.8 18.7 0.00021 20.0 3.8 2.5 2 1 0 2 2 2 2 LacY proton/sugar symporter MFS_1_like PF12832.2 gi|282164825|ref|YP_003357210.1| - 2.2e-07 30.5 7.9 0.0033 17.1 0.9 3.1 2 1 0 2 2 2 2 MFS_1 like family OATP PF03137.15 gi|282164825|ref|YP_003357210.1| - 0.5 8.3 10.3 0.25 9.3 0.2 3.4 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family DUF697 PF05128.7 gi|282164825|ref|YP_003357210.1| - 5.1 6.5 8.8 0.12 11.8 0.5 2.3 2 2 1 3 3 3 0 Domain of unknown function (DUF697) TetR_N PF00440.18 gi|282164826|ref|YP_003357211.1| - 7.2e-17 60.7 0.0 1.3e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_2 PF08361.6 gi|282164826|ref|YP_003357211.1| - 6.1e-09 35.8 0.0 8.7e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 MAATS-type transcriptional repressor, C-terminal region TetR_C_6 PF13977.1 gi|282164826|ref|YP_003357211.1| - 3.9e-05 23.6 0.0 6.5e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 Bacterial transcriptional repressor TetR_C_4 PF08359.6 gi|282164826|ref|YP_003357211.1| - 0.00013 21.8 0.0 0.00025 21.0 0.0 1.5 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region WHG PF13305.1 gi|282164826|ref|YP_003357211.1| - 0.0022 18.5 0.0 0.74 10.4 0.0 2.4 1 1 0 1 1 1 1 WHG domain LacI PF00356.16 gi|282164826|ref|YP_003357211.1| - 0.0094 15.5 0.8 0.14 11.8 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family TetR_C_5 PF08360.6 gi|282164826|ref|YP_003357211.1| - 0.058 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 QacR-like protein, C-terminal region Fer4 PF00037.22 gi|282164827|ref|YP_003357212.1| - 5.4e-09 35.2 14.9 1.8e-05 24.1 2.7 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282164827|ref|YP_003357212.1| - 6.3e-07 29.0 8.3 6.3e-07 29.0 5.7 2.8 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282164827|ref|YP_003357212.1| - 8.5e-07 28.5 14.9 2e-06 27.4 2.2 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282164827|ref|YP_003357212.1| - 8.7e-07 29.2 11.9 8.7e-07 29.2 8.2 2.7 1 1 1 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282164827|ref|YP_003357212.1| - 1.1e-06 28.3 9.6 1.1e-06 28.3 6.7 2.7 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282164827|ref|YP_003357212.1| - 0.00032 20.4 2.3 0.00032 20.4 1.6 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|282164827|ref|YP_003357212.1| - 0.00062 19.9 13.7 0.00062 19.9 9.5 3.1 1 1 1 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282164827|ref|YP_003357212.1| - 0.0037 17.2 12.0 0.0037 17.2 8.3 3.1 2 2 0 2 2 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282164827|ref|YP_003357212.1| - 0.012 16.1 1.6 0.012 16.1 1.1 3.2 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|282164827|ref|YP_003357212.1| - 0.028 15.1 2.1 0.028 15.1 1.5 3.7 2 2 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|282164827|ref|YP_003357212.1| - 0.076 13.3 3.8 0.076 13.3 2.7 4.0 5 0 0 5 5 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|282164827|ref|YP_003357212.1| - 0.1 13.0 2.3 0.1 13.0 1.6 3.2 3 1 0 3 3 2 0 4Fe-4S dicluster domain ACT_7 PF13840.1 gi|282164828|ref|YP_003357213.1| - 3.4e-23 80.9 0.0 5e-23 80.3 0.0 1.3 1 0 0 1 1 1 1 ACT domain Aminotran_1_2 PF00155.16 gi|282164829|ref|YP_003357214.1| - 3.5e-38 131.5 0.0 4.3e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|282164829|ref|YP_003357214.1| - 3e-06 26.0 0.0 2.4e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 Alanine-glyoxylate amino-transferase Prim-Pol PF09250.6 gi|282164833|ref|YP_003357218.1| - 2.9e-21 76.1 0.0 3.6e-21 75.8 0.0 1.1 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal AAA_25 PF13481.1 gi|282164834|ref|YP_003357219.1| - 4.2e-39 133.9 0.0 7.9e-39 133.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|282164834|ref|YP_003357219.1| - 0.00011 21.4 0.0 0.0014 17.7 0.0 2.3 1 1 0 1 1 1 1 KaiC AAA PF00004.24 gi|282164834|ref|YP_003357219.1| - 0.002 18.3 0.0 0.0078 16.4 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RPW8 PF05659.6 gi|282164834|ref|YP_003357219.1| - 0.04 13.4 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF2213 PF09979.4 gi|282164836|ref|YP_003357221.1| - 0.097 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2213) RHH_1 PF01402.16 gi|282164837|ref|YP_003357222.1| - 0.09 12.7 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Phage_integrase PF00589.17 gi|282164838|ref|YP_003357223.1| - 3.7e-24 85.3 0.1 8.4e-24 84.1 0.0 1.6 2 0 0 2 2 2 1 Phage integrase family C_GCAxxG_C_C PF09719.5 gi|282164839|ref|YP_003357224.1| - 1.5e-34 118.3 2.0 1.7e-34 118.1 1.4 1.0 1 0 0 1 1 1 1 Putative redox-active protein (C_GCAxxG_C_C) Hormone_5 PF00184.12 gi|282164839|ref|YP_003357224.1| - 0.0076 16.7 0.1 0.0076 16.7 0.0 2.4 3 0 0 3 3 3 1 Neurohypophysial hormones, C-terminal Domain PhzC-PhzF PF02567.11 gi|282164840|ref|YP_003357225.1| - 5.3e-56 189.9 0.0 6e-56 189.7 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.6 gi|282164840|ref|YP_003357225.1| - 0.1 11.4 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Proline racemase Erp_C PF06780.6 gi|282164841|ref|YP_003357226.1| - 0.045 13.6 0.0 0.049 13.4 0.0 1.2 1 0 0 1 1 1 0 Erp protein C-terminus Transcrip_act PF04949.8 gi|282164841|ref|YP_003357226.1| - 0.068 12.7 0.6 0.086 12.4 0.4 1.1 1 0 0 1 1 1 0 Transcriptional activator HAD_2 PF13419.1 gi|282164841|ref|YP_003357226.1| - 0.13 12.4 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase COMP PF11598.3 gi|282164841|ref|YP_003357226.1| - 0.38 10.8 2.9 0.36 10.9 0.5 1.9 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein eIF-1a PF01176.14 gi|282164842|ref|YP_003357227.1| - 1.4e-22 78.8 0.1 2.2e-22 78.2 0.1 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Inhibitor_I42 PF09394.5 gi|282164843|ref|YP_003357228.1| - 5.3e-08 33.0 0.4 1.2e-07 31.9 0.3 1.6 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 FrhB_FdhB_C PF04432.8 gi|282164844|ref|YP_003357229.1| - 1.4e-34 118.8 0.0 1.4e-34 118.8 0.0 1.6 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|282164844|ref|YP_003357229.1| - 5.6e-15 54.9 0.2 9.6e-15 54.2 0.1 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_16 PF13484.1 gi|282164844|ref|YP_003357229.1| - 4.8e-06 27.2 4.6 0.029 15.1 0.1 2.8 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|282164844|ref|YP_003357229.1| - 2.8e-05 24.0 7.7 0.016 15.1 0.0 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282164844|ref|YP_003357229.1| - 5.2e-05 23.4 22.9 0.00016 21.8 8.6 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282164844|ref|YP_003357229.1| - 0.00011 21.9 12.8 0.00011 21.9 8.9 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282164844|ref|YP_003357229.1| - 0.00024 21.4 11.9 0.02 15.2 0.5 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282164844|ref|YP_003357229.1| - 0.00026 20.6 18.5 0.00087 19.0 0.6 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|282164844|ref|YP_003357229.1| - 0.00041 20.4 17.6 0.0091 16.2 1.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282164844|ref|YP_003357229.1| - 0.00071 19.9 18.0 0.0024 18.2 10.2 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282164844|ref|YP_003357229.1| - 0.00072 19.3 20.5 0.018 14.8 2.4 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.22 gi|282164844|ref|YP_003357229.1| - 0.0025 17.3 2.0 0.0025 17.3 1.4 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282164844|ref|YP_003357229.1| - 0.0063 16.3 1.9 0.0063 16.3 1.3 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Ribosomal_L18p PF00861.17 gi|282164844|ref|YP_003357229.1| - 0.11 12.7 0.2 0.26 11.5 0.0 1.7 2 0 0 2 2 1 0 Ribosomal L18p/L5e family Fer4_17 PF13534.1 gi|282164844|ref|YP_003357229.1| - 0.31 11.4 17.5 0.49 10.7 1.5 2.7 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|282164844|ref|YP_003357229.1| - 1.1 9.9 24.5 0.27 11.8 4.2 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Baculo_11_kDa PF06143.6 gi|282164845|ref|YP_003357230.1| - 0.64 9.4 3.6 2.5 7.5 0.5 2.6 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF4131 PF13567.1 gi|282164845|ref|YP_003357230.1| - 3.7 6.9 18.0 0.74 9.2 0.8 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) Metallophos_2 PF12850.2 gi|282164846|ref|YP_003357231.1| - 2.3e-09 37.2 0.0 6.3e-09 35.8 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|282164846|ref|YP_003357231.1| - 0.00039 19.8 0.0 0.00091 18.6 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Glyco_hydro_4C PF11975.3 gi|282164846|ref|YP_003357231.1| - 0.11 12.3 0.1 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain Thioredoxin PF00085.15 gi|282164847|ref|YP_003357232.1| - 1.3e-15 56.9 0.0 1.8e-15 56.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|282164847|ref|YP_003357232.1| - 0.001 19.1 0.1 0.0037 17.3 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|282164847|ref|YP_003357232.1| - 0.0014 18.6 0.1 0.0039 17.1 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin-like Thioredox_DsbH PF03190.10 gi|282164847|ref|YP_003357232.1| - 0.0039 16.9 0.1 0.006 16.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 DUF836 PF05768.9 gi|282164847|ref|YP_003357232.1| - 0.02 15.1 0.0 0.028 14.6 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|282164847|ref|YP_003357232.1| - 0.078 12.6 0.1 0.13 11.9 0.1 1.4 1 1 0 1 1 1 0 AhpC/TSA family Redoxin PF08534.5 gi|282164847|ref|YP_003357232.1| - 0.11 12.0 0.1 0.19 11.2 0.1 1.5 1 1 0 1 1 1 0 Redoxin Thioredoxin_6 PF13848.1 gi|282164847|ref|YP_003357232.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin-like domain Methyltransf_31 PF13847.1 gi|282164849|ref|YP_003357234.1| - 4.7e-21 74.9 0.0 5.5e-21 74.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282164849|ref|YP_003357234.1| - 1.1e-17 64.3 0.0 1.6e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282164849|ref|YP_003357234.1| - 8.9e-16 57.7 0.0 1.1e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|282164849|ref|YP_003357234.1| - 7.3e-15 55.5 0.1 1.3e-14 54.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282164849|ref|YP_003357234.1| - 2.9e-12 46.6 0.0 4.5e-12 45.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282164849|ref|YP_003357234.1| - 6.6e-11 42.5 0.0 9.4e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282164849|ref|YP_003357234.1| - 3e-09 37.1 0.0 4e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|282164849|ref|YP_003357234.1| - 1e-08 34.7 0.0 1.3e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|282164849|ref|YP_003357234.1| - 1.7e-08 34.4 0.1 3e-08 33.7 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|282164849|ref|YP_003357234.1| - 2e-07 30.7 0.1 2.8e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|282164849|ref|YP_003357234.1| - 2.5e-05 23.5 0.0 3.5e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|282164849|ref|YP_003357234.1| - 9.6e-05 22.0 0.0 0.00013 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|282164849|ref|YP_003357234.1| - 0.00038 19.5 0.0 0.014 14.4 0.0 2.0 2 0 0 2 2 2 1 O-methyltransferase FtsJ PF01728.14 gi|282164849|ref|YP_003357234.1| - 0.0006 19.8 0.0 0.001 19.0 0.0 1.4 2 0 0 2 2 1 1 FtsJ-like methyltransferase PrmA PF06325.8 gi|282164849|ref|YP_003357234.1| - 0.00085 18.5 0.0 0.0011 18.1 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|282164849|ref|YP_003357234.1| - 0.0027 17.3 0.0 0.016 14.7 0.0 1.8 1 1 1 2 2 2 1 Met-10+ like-protein GCD14 PF08704.5 gi|282164849|ref|YP_003357234.1| - 0.011 15.2 0.0 0.015 14.8 0.0 1.4 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_4 PF02390.12 gi|282164849|ref|YP_003357234.1| - 0.016 14.2 0.0 0.036 13.1 0.0 1.6 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_2 PF00891.13 gi|282164849|ref|YP_003357234.1| - 0.024 13.8 0.0 0.21 10.7 0.0 1.9 1 1 0 1 1 1 0 O-methyltransferase Methyltransf_24 PF13578.1 gi|282164849|ref|YP_003357234.1| - 0.028 15.2 0.0 0.051 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.8 gi|282164849|ref|YP_003357234.1| - 0.12 11.7 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 RrnaAD PF00398.15 gi|282164849|ref|YP_003357234.1| - 0.19 10.7 0.0 0.76 8.7 0.0 1.9 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase GATase_4 PF13230.1 gi|282164850|ref|YP_003357235.1| - 6.3e-38 130.0 0.0 2e-35 121.7 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|282164850|ref|YP_003357235.1| - 3.7e-08 33.4 0.4 1.3e-07 31.6 0.3 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|282164850|ref|YP_003357235.1| - 2.2e-05 23.3 0.1 3.3e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF4131 PF13567.1 gi|282164851|ref|YP_003357236.1| - 0.0086 15.4 0.0 0.01 15.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) Drf_FH3 PF06367.11 gi|282164852|ref|YP_003357237.1| - 0.0066 15.8 1.5 0.0089 15.4 1.0 1.1 1 0 0 1 1 1 1 Diaphanous FH3 Domain DUF3597 PF12200.3 gi|282164852|ref|YP_003357237.1| - 0.019 15.3 0.2 0.019 15.3 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3597) Tektin PF03148.9 gi|282164852|ref|YP_003357237.1| - 0.031 12.8 4.0 0.038 12.5 2.7 1.1 1 0 0 1 1 1 0 Tektin family IncA PF04156.9 gi|282164852|ref|YP_003357237.1| - 0.033 13.7 3.8 0.035 13.6 2.6 1.1 1 0 0 1 1 1 0 IncA protein Sec2p PF06428.6 gi|282164852|ref|YP_003357237.1| - 0.058 13.2 4.1 0.085 12.7 2.9 1.3 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p TMF_DNA_bd PF12329.3 gi|282164852|ref|YP_003357237.1| - 0.077 12.8 9.5 0.13 12.1 6.6 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding EMP24_GP25L PF01105.19 gi|282164852|ref|YP_003357237.1| - 0.19 11.4 0.4 0.24 11.1 0.3 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF1664 PF07889.7 gi|282164852|ref|YP_003357237.1| - 0.25 11.1 2.7 0.33 10.7 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Spc7 PF08317.6 gi|282164852|ref|YP_003357237.1| - 0.29 9.7 5.8 0.35 9.4 4.0 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Plasmid_stabil PF05016.9 gi|282164852|ref|YP_003357237.1| - 0.4 11.0 2.6 0.82 10.0 1.8 1.7 1 1 0 1 1 1 0 Plasmid stabilisation system protein DUF3847 PF12958.2 gi|282164852|ref|YP_003357237.1| - 0.58 9.9 6.2 1 9.1 4.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3847) SlyX PF04102.7 gi|282164852|ref|YP_003357237.1| - 0.6 10.5 9.3 4.7 7.6 0.1 2.5 1 1 1 2 2 2 0 SlyX ATP11 PF06644.6 gi|282164852|ref|YP_003357237.1| - 0.75 9.2 8.3 0.82 9.1 5.8 1.2 1 0 0 1 1 1 0 ATP11 protein V_ATPase_I PF01496.14 gi|282164852|ref|YP_003357237.1| - 1.2 6.8 4.8 1.4 6.6 3.3 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Bap31 PF05529.7 gi|282164852|ref|YP_003357237.1| - 2.6 7.4 4.8 3.2 7.1 2.7 1.7 1 1 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF3552 PF12072.3 gi|282164852|ref|YP_003357237.1| - 4.2 6.5 10.0 5 6.2 7.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Peptidase_S49_N PF08496.5 gi|282164852|ref|YP_003357237.1| - 6.9 6.4 6.6 9.4 6.0 4.6 1.3 1 0 0 1 1 1 0 Peptidase family S49 N-terminal FlxA PF14282.1 gi|282164852|ref|YP_003357237.1| - 9.6 6.2 14.8 14 5.6 10.2 1.4 1 0 0 1 1 1 0 FlxA-like protein NTP_transf_2 PF01909.18 gi|282164853|ref|YP_003357238.1| - 1.7e-08 34.6 0.0 3.6e-08 33.6 0.0 1.6 2 0 0 2 2 2 1 Nucleotidyltransferase domain Fe_dep_repress PF01325.14 gi|282164853|ref|YP_003357238.1| - 0.00019 21.3 0.1 0.00048 19.9 0.1 1.7 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|282164853|ref|YP_003357238.1| - 0.00035 20.1 0.0 0.00057 19.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|282164853|ref|YP_003357238.1| - 0.011 15.2 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|282164853|ref|YP_003357238.1| - 0.029 13.7 0.0 0.13 11.7 0.0 2.1 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|282164853|ref|YP_003357238.1| - 0.034 13.8 0.0 0.073 12.7 0.0 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.6 gi|282164853|ref|YP_003357238.1| - 0.038 13.6 0.0 0.13 11.9 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_11 PF08279.7 gi|282164853|ref|YP_003357238.1| - 0.044 13.4 0.0 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 HTH domain HTH_AsnC-type PF13404.1 gi|282164853|ref|YP_003357238.1| - 0.047 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|282164853|ref|YP_003357238.1| - 0.09 12.4 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Fasciclin PF02469.17 gi|282164854|ref|YP_003357239.1| - 1.9e-11 44.0 0.0 3.1e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 Fasciclin domain DUF2946 PF11162.3 gi|282164854|ref|YP_003357239.1| - 0.002 18.3 1.2 0.0037 17.4 0.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2946) FxsA PF04186.8 gi|282164854|ref|YP_003357239.1| - 0.044 13.4 1.8 0.086 12.4 1.2 1.4 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein DUF4175 PF13779.1 gi|282164854|ref|YP_003357239.1| - 0.81 7.3 9.4 0.95 7.0 6.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Flavodoxin_4 PF12682.2 gi|282164855|ref|YP_003357240.1| - 5.1e-15 55.1 0.0 7.3e-15 54.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|282164855|ref|YP_003357240.1| - 4.8e-11 42.3 0.0 0.00017 21.0 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|282164855|ref|YP_003357240.1| - 3.1e-10 40.2 0.0 2.3e-05 24.4 0.0 2.4 2 1 1 3 3 3 2 Flavodoxin domain FMN_red PF03358.10 gi|282164855|ref|YP_003357240.1| - 3.5e-06 26.5 0.0 4.1e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|282164855|ref|YP_003357240.1| - 0.0031 17.4 0.1 0.023 14.7 0.0 2.1 2 1 1 3 3 3 1 Flavodoxin Fasciclin PF02469.17 gi|282164856|ref|YP_003357241.1| - 4.1e-07 30.0 0.0 5.7e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Fasciclin domain Myco_arth_vir_N PF09610.5 gi|282164859|ref|YP_003357244.1| - 0.037 13.9 0.6 0.069 13.1 0.4 1.3 1 0 0 1 1 1 0 Mycoplasma virulence signal region (Myco_arth_vir_N) PAS_9 PF13426.1 gi|282164860|ref|YP_003357245.1| - 1.6e-88 291.8 0.1 2.7e-13 50.2 0.0 7.2 7 0 0 7 7 7 7 PAS domain PAS_4 PF08448.5 gi|282164860|ref|YP_003357245.1| - 3.1e-66 220.3 0.0 5.7e-12 45.6 0.0 7.2 7 0 0 7 7 7 7 PAS fold PAS PF00989.19 gi|282164860|ref|YP_003357245.1| - 1.8e-60 201.6 0.0 1.8e-14 53.4 0.0 7.2 7 0 0 7 7 7 7 PAS fold PAS_3 PF08447.6 gi|282164860|ref|YP_003357245.1| - 4.1e-49 164.6 0.2 1.6e-11 44.1 0.0 6.5 7 0 0 7 7 7 5 PAS fold PAS_8 PF13188.1 gi|282164860|ref|YP_003357245.1| - 3.7e-32 109.1 0.0 6.6e-07 28.9 0.0 6.3 7 0 0 7 7 6 5 PAS domain HTH_IclR PF09339.5 gi|282164860|ref|YP_003357245.1| - 1.9e-08 33.7 0.0 4.4e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain PAS_11 PF14598.1 gi|282164860|ref|YP_003357245.1| - 4.1e-08 33.1 0.0 0.74 9.7 0.0 5.6 6 0 0 6 6 6 2 PAS domain PAS_7 PF12860.2 gi|282164860|ref|YP_003357245.1| - 0.00014 21.8 0.0 5.1 7.1 0.0 5.2 4 2 0 4 4 4 1 PAS fold HTH_5 PF01022.15 gi|282164860|ref|YP_003357245.1| - 0.00022 20.8 0.0 0.00053 19.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|282164860|ref|YP_003357245.1| - 0.00027 20.2 1.3 0.0012 18.1 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|282164860|ref|YP_003357245.1| - 0.0016 17.9 0.0 0.0055 16.3 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|282164860|ref|YP_003357245.1| - 0.0064 16.1 0.1 0.022 14.4 0.1 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|282164860|ref|YP_003357245.1| - 0.017 14.7 0.0 0.042 13.5 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_26 PF13443.1 gi|282164860|ref|YP_003357245.1| - 0.018 15.2 0.0 0.064 13.4 0.0 1.9 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.17 gi|282164860|ref|YP_003357245.1| - 0.026 14.3 0.0 0.11 12.3 0.0 2.1 1 0 0 1 1 1 0 Helix-turn-helix HTH_20 PF12840.2 gi|282164860|ref|YP_003357245.1| - 0.035 13.8 0.0 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|282164860|ref|YP_003357245.1| - 0.042 13.6 0.1 0.12 12.2 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_38 PF13936.1 gi|282164860|ref|YP_003357245.1| - 0.042 13.4 0.5 0.16 11.5 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain TBPIP PF07106.8 gi|282164860|ref|YP_003357245.1| - 0.045 13.3 4.9 0.077 12.5 0.0 3.2 3 0 0 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4231 PF14015.1 gi|282164861|ref|YP_003357246.1| - 0.21 11.5 0.8 0.28 11.1 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) PAS_9 PF13426.1 gi|282164862|ref|YP_003357247.1| - 1.3e-23 83.3 0.0 2.2e-14 53.6 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|282164862|ref|YP_003357247.1| - 1.9e-22 79.3 0.0 1.6e-15 57.1 0.0 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|282164862|ref|YP_003357247.1| - 2.6e-20 72.2 0.0 5.1e-20 71.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|282164862|ref|YP_003357247.1| - 2.8e-19 68.9 0.0 2.7e-13 49.6 0.0 3.6 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.6 gi|282164862|ref|YP_003357247.1| - 6e-12 45.4 0.0 1.4e-07 31.4 0.0 3.2 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|282164862|ref|YP_003357247.1| - 9.3e-10 38.0 0.0 0.00021 20.9 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.1 gi|282164862|ref|YP_003357247.1| - 4.6e-08 33.2 0.0 0.0014 18.8 0.0 3.4 3 0 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.1 gi|282164862|ref|YP_003357247.1| - 0.0017 18.1 0.0 0.0039 16.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|282164862|ref|YP_003357247.1| - 0.042 13.5 0.0 0.082 12.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|282164862|ref|YP_003357247.1| - 0.05 13.2 0.0 0.2 11.3 0.0 2.0 1 0 0 1 1 1 0 GHKL domain HisKA PF00512.20 gi|282164862|ref|YP_003357247.1| - 0.086 12.8 0.7 7.1 6.7 0.1 3.3 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.21 gi|282164863|ref|YP_003357248.1| - 2.5e-22 78.6 0.0 1.7e-21 76.0 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|282164863|ref|YP_003357248.1| - 6.5e-12 45.7 0.1 6.1e-11 42.6 0.0 2.4 3 0 0 3 3 3 1 PAS domain PAS_4 PF08448.5 gi|282164863|ref|YP_003357248.1| - 4.9e-08 32.9 0.0 2.1e-07 30.9 0.0 2.0 1 1 0 1 1 1 1 PAS fold PAS PF00989.19 gi|282164863|ref|YP_003357248.1| - 1.5e-07 31.1 0.0 3.2e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.1 gi|282164863|ref|YP_003357248.1| - 0.0013 18.4 0.0 0.0029 17.2 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|282164863|ref|YP_003357248.1| - 0.0056 16.4 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|282164863|ref|YP_003357248.1| - 0.11 12.1 0.0 0.26 10.9 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 7TMR-DISM_7TM PF07695.6 gi|282164863|ref|YP_003357248.1| - 2.9 7.4 43.9 0.057 13.0 21.0 2.1 1 1 1 2 2 2 0 7TM diverse intracellular signalling Yip1 PF04893.12 gi|282164864|ref|YP_003357249.1| - 0.00072 19.1 24.1 0.0013 18.2 16.6 1.5 1 1 0 1 1 1 1 Yip1 domain DUF360 PF04020.8 gi|282164864|ref|YP_003357249.1| - 0.13 12.6 20.5 0.26 11.6 4.6 2.3 1 1 1 2 2 2 0 Membrane protein of unknown function AzlD PF05437.7 gi|282164864|ref|YP_003357249.1| - 0.21 11.5 13.7 0.13 12.2 6.1 2.4 2 1 0 2 2 2 0 Branched-chain amino acid transport protein (AzlD) DUF420 PF04238.7 gi|282164864|ref|YP_003357249.1| - 0.32 10.9 13.9 0.49 10.3 9.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF420) FUSC PF04632.7 gi|282164864|ref|YP_003357249.1| - 0.42 8.9 5.7 0.47 8.8 4.0 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family NfeD PF01957.13 gi|282164864|ref|YP_003357249.1| - 0.55 10.3 18.3 3.6 7.7 8.1 2.1 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding ABC2_membrane_4 PF12730.2 gi|282164864|ref|YP_003357249.1| - 0.94 8.5 22.2 1.2 8.1 15.4 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|282164864|ref|YP_003357249.1| - 1.8 7.8 20.1 0.22 10.7 5.6 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein Peptidase_U4 PF03419.8 gi|282164864|ref|YP_003357249.1| - 1.9 7.4 12.9 2.3 7.1 9.0 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA CreD PF06123.7 gi|282164864|ref|YP_003357249.1| - 2.9 6.3 10.4 3.8 5.9 7.2 1.1 1 0 0 1 1 1 0 Inner membrane protein CreD MtrC PF04211.8 gi|282164864|ref|YP_003357249.1| - 5.1 6.0 17.0 37 3.2 10.4 2.4 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit C Colicin_V PF02674.11 gi|282164864|ref|YP_003357249.1| - 5.5 6.8 20.8 91 2.8 1.7 2.2 1 1 0 1 1 1 0 Colicin V production protein TMEM169 PF15052.1 gi|282164864|ref|YP_003357249.1| - 5.7 6.8 11.5 0.46 10.3 3.3 1.9 1 1 0 2 2 2 0 TMEM169 protein family Flavin_Reduct PF01613.13 gi|282164865|ref|YP_003357250.1| - 9.2e-26 90.5 0.0 1e-25 90.3 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain YcfA PF07927.7 gi|282164866|ref|YP_003357251.1| - 0.078 12.8 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 YcfA-like protein DUF1127 PF06568.6 gi|282164866|ref|YP_003357251.1| - 0.084 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1127) PAS_3 PF08447.6 gi|282164867|ref|YP_003357252.1| - 1.3e-45 153.4 1.3 6.8e-17 61.3 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|282164867|ref|YP_003357252.1| - 1.1e-20 73.9 0.0 3.6e-10 40.1 0.0 3.4 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|282164867|ref|YP_003357252.1| - 1.6e-19 69.6 0.0 3e-19 68.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|282164867|ref|YP_003357252.1| - 2.2e-19 69.3 0.0 8.2e-10 38.4 0.0 3.5 3 1 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|282164867|ref|YP_003357252.1| - 7.9e-12 45.1 0.0 3e-07 30.4 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|282164867|ref|YP_003357252.1| - 4.6e-10 38.9 0.0 4.9e-09 35.7 0.0 2.5 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|282164867|ref|YP_003357252.1| - 0.00012 21.8 0.0 0.00023 20.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|282164868|ref|YP_003357253.1| - 3.3e-42 143.0 0.0 9.8e-19 67.6 0.0 3.7 3 1 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|282164868|ref|YP_003357253.1| - 6.6e-32 109.8 0.0 1.2e-11 44.6 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|282164868|ref|YP_003357253.1| - 4.7e-29 100.4 0.0 2.9e-15 56.0 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|282164868|ref|YP_003357253.1| - 2e-26 91.8 0.0 1.3e-12 47.6 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|282164868|ref|YP_003357253.1| - 1.3e-20 73.1 0.0 2.8e-20 72.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|282164868|ref|YP_003357253.1| - 8.8e-18 63.4 0.0 2.4e-05 24.0 0.0 3.6 3 0 0 3 3 3 3 PAS domain HATPase_c_5 PF14501.1 gi|282164868|ref|YP_003357253.1| - 5.6e-07 29.2 0.0 2.4e-05 23.9 0.0 2.8 3 0 0 3 3 3 1 GHKL domain PAS_10 PF13596.1 gi|282164868|ref|YP_003357253.1| - 0.00041 20.5 0.0 1.5 9.0 0.0 3.3 3 1 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|282164868|ref|YP_003357253.1| - 0.0022 17.7 0.0 0.0048 16.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|282164869|ref|YP_003357254.1| - 2.5e-42 143.3 0.0 1.9e-11 43.9 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.1 gi|282164869|ref|YP_003357254.1| - 6.2e-41 138.9 0.0 1e-11 45.0 0.0 4.9 4 1 0 4 4 4 4 PAS domain PAS PF00989.19 gi|282164869|ref|YP_003357254.1| - 2.7e-25 88.3 0.0 1.6e-06 27.8 0.0 6.1 5 2 0 5 5 5 4 PAS fold HATPase_c PF02518.21 gi|282164869|ref|YP_003357254.1| - 6.2e-18 64.5 0.0 1.2e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|282164869|ref|YP_003357254.1| - 1e-17 63.2 0.0 0.0032 17.2 0.0 4.6 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|282164869|ref|YP_003357254.1| - 6.2e-13 48.6 0.1 1.6e-05 24.9 0.1 4.8 4 0 0 4 4 4 3 PAS fold PAS_7 PF12860.2 gi|282164869|ref|YP_003357254.1| - 8.7e-06 25.7 0.4 2.1 8.3 0.1 5.0 4 1 0 4 4 4 2 PAS fold PAS_10 PF13596.1 gi|282164869|ref|YP_003357254.1| - 1.5e-05 25.2 0.0 0.39 11.0 0.0 5.4 6 0 0 6 6 6 1 PAS domain HATPase_c_2 PF13581.1 gi|282164869|ref|YP_003357254.1| - 0.00012 21.8 0.0 0.00031 20.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|282164869|ref|YP_003357254.1| - 0.0015 18.4 0.0 0.015 15.2 0.0 2.4 3 0 0 3 3 2 1 PAS domain Cache_3 PF14827.1 gi|282164869|ref|YP_003357254.1| - 0.01 15.6 0.2 1.4 8.8 0.1 2.9 2 0 0 2 2 2 0 Sensory domain of two-component sensor kinase DUF4279 PF14106.1 gi|282164869|ref|YP_003357254.1| - 0.079 12.8 0.1 22 4.9 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4279) DUF1706 PF08020.6 gi|282164869|ref|YP_003357254.1| - 0.13 11.7 0.3 0.49 9.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1706) Tup_N PF08581.5 gi|282164869|ref|YP_003357254.1| - 0.38 10.9 5.6 6.9 6.9 0.2 3.5 4 0 0 4 4 4 0 Tup N-terminal FtsH_ext PF06480.10 gi|282164870|ref|YP_003357255.1| - 0.086 13.0 0.1 0.14 12.3 0.1 1.3 1 0 0 1 1 1 0 FtsH Extracellular TIR_2 PF13676.1 gi|282164871|ref|YP_003357256.1| - 1.1e-20 73.6 0.0 2e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 TIR domain TIR PF01582.15 gi|282164871|ref|YP_003357256.1| - 4.7e-09 35.8 0.0 8e-09 35.0 0.0 1.4 1 0 0 1 1 1 1 TIR domain DUF1080 PF06439.6 gi|282164871|ref|YP_003357256.1| - 1.3e-08 34.9 0.1 2.2e-08 34.2 0.1 1.4 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1080) DUF1863 PF08937.6 gi|282164871|ref|YP_003357256.1| - 8.5e-06 25.8 1.4 0.0025 17.8 0.0 2.8 3 0 0 3 3 3 2 MTH538 TIR-like domain (DUF1863) Laminin_G_3 PF13385.1 gi|282164871|ref|YP_003357256.1| - 2.3e-05 24.6 1.1 4.2e-05 23.8 0.7 1.4 1 1 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily Laminin_G_2 PF02210.19 gi|282164871|ref|YP_003357256.1| - 0.016 15.2 0.0 0.032 14.2 0.0 1.5 1 0 0 1 1 1 0 Laminin G domain Laminin_G_1 PF00054.18 gi|282164871|ref|YP_003357256.1| - 0.03 14.3 0.1 1.1 9.2 0.0 2.3 1 1 1 2 2 2 0 Laminin G domain PAS_9 PF13426.1 gi|282164872|ref|YP_003357257.1| - 5.4e-27 94.2 0.4 1.1e-14 54.6 0.0 2.9 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|282164872|ref|YP_003357257.1| - 1.1e-19 70.2 0.1 1.7e-09 37.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|282164872|ref|YP_003357257.1| - 6.7e-18 64.7 0.0 5.8e-11 42.3 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|282164872|ref|YP_003357257.1| - 7.1e-16 58.0 0.0 4.9e-10 39.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|282164872|ref|YP_003357257.1| - 4.4e-11 42.4 0.1 2.3e-10 40.1 0.0 2.3 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|282164872|ref|YP_003357257.1| - 6.8e-07 28.9 0.0 2.1e-06 27.3 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.1 gi|282164872|ref|YP_003357257.1| - 4.7e-05 23.6 0.1 0.00028 21.1 0.0 2.2 2 1 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|282164872|ref|YP_003357257.1| - 0.0012 18.7 0.5 0.29 11.1 0.0 3.4 3 0 0 3 3 3 1 PAS fold Abi PF02517.11 gi|282164873|ref|YP_003357258.1| - 1.9e-11 43.9 18.0 6.1e-10 39.0 12.5 2.9 1 1 0 1 1 1 1 CAAX protease self-immunity NTP_transf_2 PF01909.18 gi|282164874|ref|YP_003357259.1| - 5.8e-11 42.5 0.1 1.1e-10 41.7 0.1 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain MarR_2 PF12802.2 gi|282164874|ref|YP_003357259.1| - 0.0095 15.5 0.0 0.027 14.1 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|282164874|ref|YP_003357259.1| - 0.01 15.2 0.1 0.22 10.9 0.0 2.9 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|282164874|ref|YP_003357259.1| - 0.016 15.3 0.0 0.055 13.6 0.0 1.8 1 1 1 2 2 2 0 Winged helix-turn helix HTH_IclR PF09339.5 gi|282164874|ref|YP_003357259.1| - 0.024 14.2 0.0 0.043 13.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF294 PF03445.8 gi|282164874|ref|YP_003357259.1| - 0.032 13.8 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HTH_27 PF13463.1 gi|282164874|ref|YP_003357259.1| - 0.056 13.7 0.0 0.14 12.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF3783 PF12646.2 gi|282164874|ref|YP_003357259.1| - 0.13 12.0 0.1 1.1 9.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) HEPN PF05168.9 gi|282164875|ref|YP_003357260.1| - 6.5e-13 48.6 0.4 8.5e-13 48.2 0.2 1.1 1 0 0 1 1 1 1 HEPN domain UPF0150 PF03681.10 gi|282164876|ref|YP_003357261.1| - 0.011 15.3 0.0 0.016 14.8 0.0 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0150) Nitroreductase PF00881.19 gi|282164877|ref|YP_003357262.1| - 3.6e-35 121.2 0.0 4.3e-35 120.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|282164877|ref|YP_003357262.1| - 0.00053 19.2 0.1 0.0089 15.2 0.0 2.3 2 0 0 2 2 2 1 Putative TM nitroreductase DUF2636 PF11120.3 gi|282164878|ref|YP_003357263.1| - 0.062 12.7 0.4 0.13 11.7 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2636) DUF3353 PF11833.3 gi|282164878|ref|YP_003357263.1| - 0.18 11.2 7.0 0.022 14.1 2.2 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) XK-related PF09815.4 gi|282164878|ref|YP_003357263.1| - 0.39 9.6 7.8 0.5 9.3 0.6 2.1 2 0 0 2 2 2 0 XK-related protein Pex24p PF06398.6 gi|282164878|ref|YP_003357263.1| - 0.76 8.5 4.0 0.79 8.4 2.7 1.0 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin Herpes_LMP1 PF05297.6 gi|282164878|ref|YP_003357263.1| - 2.8 6.7 7.3 0.097 11.5 1.0 1.5 2 0 0 2 2 2 0 Herpesvirus latent membrane protein 1 (LMP1) DUF2136 PF09907.4 gi|282164879|ref|YP_003357264.1| - 0.00026 21.0 0.3 0.00032 20.7 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2136) Antimicrobial_9 PF08104.6 gi|282164879|ref|YP_003357264.1| - 0.076 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Ponericin L family Plasmid_stabil PF05016.9 gi|282164879|ref|YP_003357264.1| - 0.1 12.9 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 Plasmid stabilisation system protein Nitroreductase PF00881.19 gi|282164881|ref|YP_003357266.1| - 0.0015 18.3 0.0 0.0017 18.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family PIN_3 PF13470.1 gi|282164882|ref|YP_003357267.1| - 5e-05 23.9 0.4 9.1e-05 23.1 0.3 1.5 1 0 0 1 1 1 1 PIN domain AAA_21 PF13304.1 gi|282164883|ref|YP_003357268.1| - 7.1e-23 81.9 4.5 8.9e-14 52.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282164883|ref|YP_003357268.1| - 3.8e-09 36.0 4.7 1.4e-06 27.6 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|282164883|ref|YP_003357268.1| - 0.00016 22.0 4.8 0.00035 20.9 3.3 1.5 1 1 0 1 1 1 1 AAA domain DUF2813 PF11398.3 gi|282164883|ref|YP_003357268.1| - 0.00036 19.7 0.1 0.0035 16.4 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) SMC_N PF02463.14 gi|282164883|ref|YP_003357268.1| - 0.00049 19.4 0.7 0.0011 18.2 0.1 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF3696 PF12476.3 gi|282164883|ref|YP_003357268.1| - 0.0012 18.7 0.1 0.003 17.4 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3696) AAA_29 PF13555.1 gi|282164883|ref|YP_003357268.1| - 0.027 13.9 0.0 0.086 12.3 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain Exo_endo_phos PF03372.18 gi|282164884|ref|YP_003357269.1| - 3.3e-14 53.4 0.0 4.5e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|282164884|ref|YP_003357269.1| - 8.9e-08 31.7 0.0 1.5e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase COQ9 PF08511.6 gi|282164884|ref|YP_003357269.1| - 0.096 12.2 0.1 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 COQ9 DUF3221 PF11518.3 gi|282164885|ref|YP_003357270.1| - 0.22 11.2 2.6 0.17 11.5 0.6 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3221) N6_N4_Mtase PF01555.13 gi|282164886|ref|YP_003357271.1| - 6e-48 163.3 0.0 7.6e-48 163.0 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|282164886|ref|YP_003357271.1| - 3.4e-14 52.8 0.0 1.5e-06 28.1 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|282164886|ref|YP_003357271.1| - 2.3e-07 30.5 0.0 2.5e-05 23.9 0.0 2.2 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|282164886|ref|YP_003357271.1| - 0.00045 19.8 0.0 0.05 13.1 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282164886|ref|YP_003357271.1| - 0.0012 19.3 0.1 5.1 7.6 0.0 3.0 3 0 0 3 3 3 2 Methyltransferase domain Methyltransf_15 PF09445.5 gi|282164886|ref|YP_003357271.1| - 0.0012 18.3 0.0 0.17 11.4 0.0 2.2 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase MethyltransfD12 PF02086.10 gi|282164886|ref|YP_003357271.1| - 0.0015 18.0 1.4 0.034 13.6 0.0 2.3 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_12 PF08242.7 gi|282164886|ref|YP_003357271.1| - 0.0037 17.6 0.0 0.7 10.4 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.8 gi|282164886|ref|YP_003357271.1| - 0.033 13.2 0.0 0.053 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|282164886|ref|YP_003357271.1| - 0.045 14.3 0.0 0.42 11.2 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain MTS PF05175.9 gi|282164886|ref|YP_003357271.1| - 0.11 11.8 0.0 1.6 8.0 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase small domain HSDR_N_2 PF13588.1 gi|282164888|ref|YP_003357273.1| - 2.6e-06 27.2 0.4 2.9e-05 23.8 0.1 2.8 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) RSV_NS2 PF03113.9 gi|282164888|ref|YP_003357273.1| - 0.77 9.7 5.2 1.1 9.2 1.6 2.3 2 0 0 2 2 2 0 Respiratory synctial virus non-structural protein NS2 Methyltrn_RNA_3 PF02598.12 gi|282164889|ref|YP_003357274.1| - 3.3e-64 217.0 0.0 4.2e-64 216.6 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.14 gi|282164889|ref|YP_003357274.1| - 0.0084 15.9 0.0 2.6 7.8 0.0 2.2 2 0 0 2 2 2 2 SpoU rRNA Methylase family Ribosomal_L3 PF00297.17 gi|282164890|ref|YP_003357275.1| - 9.7e-75 251.3 0.7 1.1e-74 251.1 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|282164891|ref|YP_003357276.1| - 1.7e-45 154.7 0.2 2e-45 154.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|282164892|ref|YP_003357277.1| - 4.7e-18 64.9 1.4 7e-18 64.3 1.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L2_C PF03947.13 gi|282164893|ref|YP_003357278.1| - 9.6e-43 145.0 0.5 1.8e-42 144.2 0.4 1.4 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|282164893|ref|YP_003357278.1| - 2.4e-14 53.0 0.0 2.4e-14 53.0 0.0 2.2 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|282164894|ref|YP_003357279.1| - 6e-24 83.4 1.7 9.1e-24 82.8 1.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 MecA_N PF05223.6 gi|282164894|ref|YP_003357279.1| - 0.15 12.1 0.9 0.36 10.8 0.1 1.9 1 1 1 2 2 2 0 NTF2-like N-terminal transpeptidase domain Ribosomal_L22 PF00237.14 gi|282164895|ref|YP_003357280.1| - 2.8e-30 104.3 0.2 3.4e-30 104.0 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.15 gi|282164896|ref|YP_003357281.1| - 4.3e-19 68.5 0.6 7.8e-19 67.6 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|282164896|ref|YP_003357281.1| - 5.6e-16 57.8 0.1 1.1e-15 56.8 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|282164896|ref|YP_003357281.1| - 0.00028 20.4 0.2 0.00028 20.4 0.2 2.4 4 0 0 4 4 4 1 KH domain KH_3 PF13014.1 gi|282164896|ref|YP_003357281.1| - 0.017 14.7 0.2 0.22 11.2 0.0 2.5 2 0 0 2 2 2 0 KH domain KH_4 PF13083.1 gi|282164896|ref|YP_003357281.1| - 0.044 13.4 0.2 0.1 12.2 0.2 1.6 1 0 0 1 1 1 0 KH domain Ribosomal_L29 PF00831.18 gi|282164897|ref|YP_003357282.1| - 1.2e-19 69.7 2.6 1.3e-19 69.5 1.8 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein cwf21 PF08312.7 gi|282164897|ref|YP_003357282.1| - 0.047 13.5 2.7 0.084 12.7 1.9 1.5 1 0 0 1 1 1 0 cwf21 domain Radical_SAM PF04055.16 gi|282164897|ref|YP_003357282.1| - 0.07 13.2 0.1 0.08 13.1 0.1 1.0 1 0 0 1 1 1 0 Radical SAM superfamily SUI1 PF01253.17 gi|282164898|ref|YP_003357283.1| - 1.1e-24 86.0 1.1 1.3e-24 85.8 0.8 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.10 gi|282164898|ref|YP_003357283.1| - 0.024 13.8 0.6 0.032 13.4 0.4 1.2 1 0 0 1 1 1 0 DTW domain Img2 PF05046.9 gi|282164898|ref|YP_003357283.1| - 0.11 12.7 0.2 0.19 11.9 0.1 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) Fibrinogen_aC PF12160.3 gi|282164898|ref|YP_003357283.1| - 1.2 8.6 3.8 0.66 9.4 0.2 2.1 2 1 1 3 3 3 0 Fibrinogen alpha C domain UPF0086 PF01868.11 gi|282164899|ref|YP_003357284.1| - 8.2e-23 79.8 0.0 1e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.15 gi|282164900|ref|YP_003357285.1| - 3.3e-28 97.5 2.4 4e-28 97.2 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 DUF2535 PF10751.4 gi|282164900|ref|YP_003357285.1| - 0.0054 16.8 0.1 0.013 15.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2535) Ribosomal_L14 PF00238.14 gi|282164901|ref|YP_003357286.1| - 7.6e-39 132.2 0.4 8.5e-39 132.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e KOW PF00467.24 gi|282164902|ref|YP_003357287.1| - 5e-07 29.1 3.8 1e-06 28.2 2.7 1.5 1 0 0 1 1 1 1 KOW motif DUF4150 PF13665.1 gi|282164902|ref|YP_003357287.1| - 0.035 13.9 0.3 0.048 13.5 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4150) Ribosomal_S4e PF00900.15 gi|282164903|ref|YP_003357288.1| - 1.1e-23 82.7 0.2 2.4e-23 81.5 0.1 1.6 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|282164903|ref|YP_003357288.1| - 7.2e-15 54.5 3.5 1.3e-14 53.7 2.4 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|282164903|ref|YP_003357288.1| - 3.6e-06 26.3 0.1 6.5e-06 25.4 0.1 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|282164903|ref|YP_003357288.1| - 0.0008 19.0 0.7 0.0008 19.0 0.5 2.3 2 0 0 2 2 2 1 KOW motif Ribosomal_L5_C PF00673.16 gi|282164904|ref|YP_003357289.1| - 7.6e-28 96.1 0.0 1.2e-27 95.5 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|282164904|ref|YP_003357289.1| - 3.4e-17 61.9 1.2 4.7e-17 61.5 0.2 1.7 2 0 0 2 2 2 1 Ribosomal protein L5 DUF824 PF05688.6 gi|282164904|ref|YP_003357289.1| - 0.088 12.4 0.2 0.7 9.5 0.0 2.4 1 1 1 2 2 2 0 Salmonella repeat of unknown function (DUF824) Ribosomal_S14 PF00253.16 gi|282164905|ref|YP_003357290.1| - 6e-19 67.1 5.0 6.9e-19 66.9 3.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DZR PF12773.2 gi|282164905|ref|YP_003357290.1| - 0.017 14.9 0.6 0.024 14.4 0.4 1.3 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L37ae PF01780.14 gi|282164905|ref|YP_003357290.1| - 0.019 14.8 0.7 0.022 14.6 0.5 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF1451 PF07295.6 gi|282164905|ref|YP_003357290.1| - 0.025 14.3 0.2 0.032 13.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zf-FPG_IleRS PF06827.9 gi|282164905|ref|YP_003357290.1| - 0.027 14.1 4.6 0.045 13.4 3.2 1.4 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS DUF2318 PF10080.4 gi|282164905|ref|YP_003357290.1| - 0.031 14.0 0.3 0.032 13.9 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) A2L_zn_ribbon PF08792.5 gi|282164905|ref|YP_003357290.1| - 0.067 12.6 1.0 0.096 12.1 0.7 1.2 1 0 0 1 1 1 0 A2L zinc ribbon domain FYVE_2 PF02318.11 gi|282164905|ref|YP_003357290.1| - 0.097 12.5 0.3 0.11 12.4 0.2 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Zn_Tnp_IS1595 PF12760.2 gi|282164905|ref|YP_003357290.1| - 0.15 11.9 4.3 0.17 11.6 3.0 1.1 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|282164905|ref|YP_003357290.1| - 0.27 11.3 5.6 1.2 9.2 0.5 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.1 gi|282164905|ref|YP_003357290.1| - 0.29 10.6 1.9 1.4 8.5 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L40e PF01020.12 gi|282164905|ref|YP_003357290.1| - 0.39 10.3 7.3 1.2 8.8 0.6 2.2 1 1 1 2 2 2 0 Ribosomal L40e family Rsm1 PF08600.5 gi|282164905|ref|YP_003357290.1| - 0.82 9.5 3.6 0.73 9.7 0.9 1.8 1 1 1 2 2 2 0 Rsm1-like FYVE PF01363.16 gi|282164905|ref|YP_003357290.1| - 0.99 9.3 4.7 1.7 8.6 3.2 1.4 1 1 0 1 1 1 0 FYVE zinc finger Ribosomal_S8 PF00410.14 gi|282164906|ref|YP_003357291.1| - 4.9e-27 94.3 0.0 6e-27 94.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|282164907|ref|YP_003357292.1| - 1.2e-28 99.4 5.3 1.1e-16 61.0 0.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DUF4115 PF13464.1 gi|282164907|ref|YP_003357292.1| - 0.21 11.2 2.0 0.77 9.4 0.1 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4115) Ribosomal_L32e PF01655.13 gi|282164908|ref|YP_003357293.1| - 5.8e-36 122.8 1.0 1e-35 122.0 0.7 1.4 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.15 gi|282164909|ref|YP_003357294.1| - 1.5e-58 196.7 12.9 1.7e-58 196.6 8.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF3391 PF11871.3 gi|282164909|ref|YP_003357294.1| - 0.024 14.8 1.4 0.044 13.9 1.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3391) Ribosomal_L18p PF00861.17 gi|282164910|ref|YP_003357295.1| - 3.1e-30 104.8 1.4 4e-30 104.4 1.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|282164910|ref|YP_003357295.1| - 0.024 15.1 0.1 0.078 13.5 0.1 1.8 1 1 1 2 2 2 0 Ribosomal L18 C-terminal region Ribosomal_S5 PF00333.15 gi|282164911|ref|YP_003357296.1| - 1.1e-24 85.9 2.9 1.1e-24 85.9 2.0 1.6 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|282164911|ref|YP_003357296.1| - 5.6e-23 80.0 1.3 6.8e-23 79.7 0.2 1.6 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.15 gi|282164912|ref|YP_003357297.1| - 1.7e-23 81.8 0.2 2.7e-23 81.3 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|282164913|ref|YP_003357298.1| - 6.5e-26 91.2 0.2 8.3e-26 90.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|282164914|ref|YP_003357299.1| - 2.9e-94 315.8 29.7 3.8e-94 315.4 20.6 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|282164914|ref|YP_003357299.1| - 4.4e-10 38.9 0.8 1.5e-09 37.1 0.5 2.0 1 0 0 1 1 1 1 Plug domain of Sec61p ADK PF00406.17 gi|282164915|ref|YP_003357300.1| - 2e-59 199.7 0.0 2.4e-59 199.5 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|282164915|ref|YP_003357300.1| - 2.5e-18 65.4 2.5 5.4e-18 64.3 1.7 1.6 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|282164915|ref|YP_003357300.1| - 5.7e-11 43.2 0.1 1.1e-10 42.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|282164915|ref|YP_003357300.1| - 7.1e-08 32.8 0.1 2.5e-07 31.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|282164915|ref|YP_003357300.1| - 2.5e-05 24.1 0.0 5e-05 23.1 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|282164915|ref|YP_003357300.1| - 0.004 17.3 0.0 0.012 15.8 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HypA PF01155.14 gi|282164915|ref|YP_003357300.1| - 0.0065 16.1 0.1 0.01 15.5 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Thymidylate_kin PF02223.12 gi|282164915|ref|YP_003357300.1| - 0.02 14.2 0.3 0.18 11.1 0.0 2.3 3 0 0 3 3 3 0 Thymidylate kinase SKI PF01202.17 gi|282164915|ref|YP_003357300.1| - 0.022 14.6 0.1 2.9 7.7 0.0 2.5 1 1 2 3 3 3 0 Shikimate kinase DUF1451 PF07295.6 gi|282164915|ref|YP_003357300.1| - 0.032 14.0 0.1 0.05 13.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DZR PF12773.2 gi|282164915|ref|YP_003357300.1| - 0.039 13.7 0.7 0.076 12.8 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon Homez PF11569.3 gi|282164915|ref|YP_003357300.1| - 0.057 12.4 0.1 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Homeodomain leucine-zipper encoding, Homez KdpD PF02702.12 gi|282164915|ref|YP_003357300.1| - 0.058 12.5 0.0 0.12 11.5 0.0 1.5 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain DUF3039 PF11238.3 gi|282164915|ref|YP_003357300.1| - 0.066 12.6 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) Zeta_toxin PF06414.7 gi|282164915|ref|YP_003357300.1| - 0.075 12.1 0.0 0.12 11.4 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin RuvB_N PF05496.7 gi|282164915|ref|YP_003357300.1| - 0.088 11.8 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus LcrV PF04792.7 gi|282164915|ref|YP_003357300.1| - 0.094 11.7 0.1 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 V antigen (LcrV) protein AAA_28 PF13521.1 gi|282164915|ref|YP_003357300.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zn-ribbon_8 PF09723.5 gi|282164915|ref|YP_003357300.1| - 0.13 12.2 0.8 0.24 11.3 0.5 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|282164915|ref|YP_003357300.1| - 0.19 10.9 1.4 0.35 10.1 1.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|282164915|ref|YP_003357300.1| - 0.22 11.2 3.0 2.3 8.0 0.5 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-dskA_traR PF01258.12 gi|282164915|ref|YP_003357300.1| - 0.27 11.0 2.8 14 5.4 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-C2H2_3 PF13878.1 gi|282164915|ref|YP_003357300.1| - 0.87 9.2 4.2 0.28 10.7 0.3 1.9 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF106 PF01956.11 gi|282164916|ref|YP_003357301.1| - 1e-38 132.5 10.2 1e-38 132.5 7.1 1.5 1 1 1 2 2 2 1 Integral membrane protein DUF106 FtsL PF04999.8 gi|282164916|ref|YP_003357301.1| - 0.018 14.7 1.0 0.05 13.3 0.7 1.7 1 0 0 1 1 1 0 Cell division protein FtsL Sm_multidrug_ex PF06695.6 gi|282164916|ref|YP_003357301.1| - 0.029 14.5 3.5 4.2 7.5 0.0 2.8 2 1 1 3 3 3 0 Putative small multi-drug export protein DUF4446 PF14584.1 gi|282164916|ref|YP_003357301.1| - 0.061 13.1 1.0 0.11 12.2 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF4282 PF14110.1 gi|282164916|ref|YP_003357301.1| - 0.27 11.4 6.1 2.1 8.6 0.0 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4282) DUF4199 PF13858.1 gi|282164916|ref|YP_003357301.1| - 0.72 9.7 11.8 0.13 12.2 2.2 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF4199) DctQ PF04290.7 gi|282164916|ref|YP_003357301.1| - 1.4 8.7 14.0 0.09 12.5 0.4 2.2 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF3671 PF12420.3 gi|282164916|ref|YP_003357301.1| - 2.1 8.3 9.1 4.5 7.3 2.8 2.6 2 1 0 2 2 2 0 Protein of unknown function Cytidylate_kin2 PF13189.1 gi|282164917|ref|YP_003357302.1| - 2.8e-15 56.6 1.4 9.3e-14 51.7 1.0 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|282164917|ref|YP_003357302.1| - 1.1e-12 48.4 0.0 4e-11 43.3 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|282164917|ref|YP_003357302.1| - 1.4e-11 45.2 0.4 3.6e-10 40.7 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|282164917|ref|YP_003357302.1| - 1.8e-06 27.8 0.5 1.8e-05 24.6 0.4 2.1 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|282164917|ref|YP_003357302.1| - 4.4e-05 23.3 0.2 0.00011 22.1 0.0 1.6 1 1 1 2 2 2 1 Adenylate kinase AAA PF00004.24 gi|282164917|ref|YP_003357302.1| - 8.4e-05 22.7 0.0 0.00014 22.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|282164917|ref|YP_003357302.1| - 0.00099 19.1 0.1 0.0032 17.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.13 gi|282164917|ref|YP_003357302.1| - 0.0013 18.2 0.3 0.0014 18.0 0.2 1.2 1 0 0 1 1 1 1 Cytidylate kinase Zeta_toxin PF06414.7 gi|282164917|ref|YP_003357302.1| - 0.0022 17.1 0.2 0.0069 15.5 0.0 1.8 1 1 1 2 2 2 1 Zeta toxin AAA_19 PF13245.1 gi|282164917|ref|YP_003357302.1| - 0.0029 17.3 0.0 0.018 14.8 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|282164917|ref|YP_003357302.1| - 0.0072 16.3 0.8 0.014 15.4 0.5 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|282164917|ref|YP_003357302.1| - 0.017 15.2 0.0 0.028 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain SKI PF01202.17 gi|282164917|ref|YP_003357302.1| - 0.019 14.8 0.1 2.1 8.1 0.0 2.1 2 0 0 2 2 2 0 Shikimate kinase CoaE PF01121.15 gi|282164917|ref|YP_003357302.1| - 0.021 14.2 0.5 0.47 9.8 0.0 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase KTI12 PF08433.5 gi|282164917|ref|YP_003357302.1| - 0.022 13.9 0.1 0.039 13.1 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 UPF0079 PF02367.12 gi|282164917|ref|YP_003357302.1| - 0.052 13.1 0.1 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 CPT PF07931.7 gi|282164917|ref|YP_003357302.1| - 0.079 12.5 1.2 0.7 9.4 0.8 2.2 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_5 PF07728.9 gi|282164917|ref|YP_003357302.1| - 0.096 12.4 0.0 0.24 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TruB_N PF01509.13 gi|282164918|ref|YP_003357303.1| - 1.1e-27 97.0 0.5 5.1e-16 59.1 0.1 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|282164918|ref|YP_003357303.1| - 1.6e-16 59.7 2.5 3.3e-16 58.7 0.7 2.1 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.7 gi|282164918|ref|YP_003357303.1| - 7.5e-16 57.8 0.0 2.4e-15 56.2 0.0 1.8 2 0 0 2 2 2 1 DKCLD (NUC011) domain Methyltransf_18 PF12847.2 gi|282164919|ref|YP_003357304.1| - 1.7e-11 44.6 0.1 2.5e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282164919|ref|YP_003357304.1| - 6.1e-09 35.6 0.0 7.8e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282164919|ref|YP_003357304.1| - 6.5e-09 36.1 0.0 9.7e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282164919|ref|YP_003357304.1| - 8.5e-09 35.7 0.0 1.3e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282164919|ref|YP_003357304.1| - 1.1e-06 29.0 0.0 1.7e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282164919|ref|YP_003357304.1| - 3.5e-06 27.0 0.0 4.2e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282164919|ref|YP_003357304.1| - 1.2e-05 25.1 0.0 1.3e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|282164919|ref|YP_003357304.1| - 0.00063 18.8 0.0 0.00088 18.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) MTS PF05175.9 gi|282164919|ref|YP_003357304.1| - 0.0036 16.6 0.0 0.0046 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|282164919|ref|YP_003357304.1| - 0.021 13.9 0.0 0.037 13.1 0.0 1.4 1 0 0 1 1 1 0 Tellurite resistance protein TehB Ubie_methyltran PF01209.13 gi|282164919|ref|YP_003357304.1| - 0.026 13.6 0.0 0.035 13.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|282164919|ref|YP_003357304.1| - 0.047 12.7 0.0 0.064 12.3 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|282164919|ref|YP_003357304.1| - 0.059 12.7 0.0 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW KRTAP PF11759.3 gi|282164919|ref|YP_003357304.1| - 0.12 12.6 2.9 0.2 11.9 2.0 1.3 1 0 0 1 1 1 0 Keratin-associated matrix Lipocalin_4 PF13648.1 gi|282164920|ref|YP_003357305.1| - 0.046 14.3 0.7 0.059 13.9 0.5 1.3 1 1 0 1 1 1 0 Lipocalin-like domain CW_binding_1 PF01473.15 gi|282164920|ref|YP_003357305.1| - 3.4 7.9 7.3 0.56 10.4 1.2 2.5 3 0 0 3 3 3 0 Putative cell wall binding repeat CAAD PF14159.1 gi|282164921|ref|YP_003357306.1| - 0.0017 17.9 1.0 0.0017 17.9 0.7 1.0 1 0 0 1 1 1 1 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF2929 PF11151.3 gi|282164921|ref|YP_003357306.1| - 0.071 13.2 1.0 0.071 13.2 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2929) DUF3302 PF11742.3 gi|282164921|ref|YP_003357306.1| - 1.1 9.1 4.3 18 5.2 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3302) PhoU_div PF01865.11 gi|282164922|ref|YP_003357307.1| - 5.1e-50 169.6 1.4 5.7e-50 169.4 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 DUF3086 PF11285.3 gi|282164922|ref|YP_003357307.1| - 0.013 14.3 1.1 0.017 13.9 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) FAM183 PF14886.1 gi|282164922|ref|YP_003357307.1| - 0.059 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 FAM183A and FAM183B related FUR PF01475.14 gi|282164922|ref|YP_003357307.1| - 0.059 13.2 0.1 1.2 9.0 0.0 2.7 2 1 0 3 3 3 0 Ferric uptake regulator family PAS_9 PF13426.1 gi|282164923|ref|YP_003357308.1| - 1.1e-15 57.9 0.0 1.3e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|282164923|ref|YP_003357308.1| - 6.1e-11 42.3 0.0 7.4e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|282164923|ref|YP_003357308.1| - 7.1e-10 38.6 0.0 8.8e-10 38.3 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|282164923|ref|YP_003357308.1| - 7.2e-05 22.4 0.0 0.00012 21.8 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.6 gi|282164923|ref|YP_003357308.1| - 0.00017 21.5 0.0 0.00028 20.9 0.0 1.4 1 1 0 1 1 1 1 PAS fold PAS_7 PF12860.2 gi|282164923|ref|YP_003357308.1| - 0.0061 16.5 0.0 0.0081 16.1 0.0 1.2 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.1 gi|282164924|ref|YP_003357309.1| - 2.6e-22 79.9 0.0 4.5e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|282164924|ref|YP_003357309.1| - 1.4e-16 60.1 0.0 2.8e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|282164924|ref|YP_003357309.1| - 0.0014 18.4 0.0 0.0034 17.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF_3 PF13492.1 gi|282164924|ref|YP_003357309.1| - 0.0086 16.1 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 GAF domain Ribosomal_S13 PF00416.17 gi|282164925|ref|YP_003357310.1| - 9.7e-30 103.1 1.0 1.3e-29 102.8 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 LEDGF PF11467.3 gi|282164925|ref|YP_003357310.1| - 0.086 12.5 0.1 0.84 9.3 0.0 2.1 2 0 0 2 2 2 0 Lens epithelium-derived growth factor (LEDGF) RR_TM4-6 PF06459.7 gi|282164925|ref|YP_003357310.1| - 3.2 7.5 5.4 3.8 7.3 3.7 1.2 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 S4 PF01479.20 gi|282164926|ref|YP_003357311.1| - 7.6e-14 50.8 0.0 1.3e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|282164926|ref|YP_003357311.1| - 0.0019 18.5 2.8 0.031 14.6 2.0 2.2 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|282164927|ref|YP_003357312.1| - 8.3e-43 145.0 1.0 1e-42 144.7 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.5 gi|282164927|ref|YP_003357312.1| - 0.012 15.1 0.6 0.015 14.7 0.4 1.3 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) RNA_pol_A_bac PF01000.21 gi|282164928|ref|YP_003357313.1| - 4.8e-28 97.5 0.4 5.4e-27 94.1 0.0 2.4 2 1 1 3 3 3 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|282164928|ref|YP_003357313.1| - 1.3e-13 49.8 0.0 1.6e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_7 PF12838.2 gi|282164928|ref|YP_003357313.1| - 1.7e-05 25.0 12.8 1.7e-05 25.0 8.8 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282164928|ref|YP_003357313.1| - 1.9e-05 24.8 13.1 1.9e-05 24.8 9.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282164928|ref|YP_003357313.1| - 2.3e-05 25.0 13.4 0.0025 18.5 1.0 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|282164928|ref|YP_003357313.1| - 4e-05 23.5 9.8 0.023 14.7 3.9 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282164928|ref|YP_003357313.1| - 4.2e-05 23.2 12.7 4.2e-05 23.2 8.8 2.1 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282164928|ref|YP_003357313.1| - 0.00015 21.1 2.2 0.00015 21.1 1.5 3.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|282164928|ref|YP_003357313.1| - 0.018 15.6 2.3 0.018 15.6 1.6 3.4 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|282164928|ref|YP_003357313.1| - 0.022 14.6 2.3 0.022 14.6 1.6 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|282164928|ref|YP_003357313.1| - 0.031 14.5 4.1 0.031 14.5 2.9 3.3 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282164928|ref|YP_003357313.1| - 0.38 10.6 21.7 0.41 10.5 2.5 3.3 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|282164928|ref|YP_003357313.1| - 0.4 10.6 10.2 0.033 14.0 3.7 1.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282164928|ref|YP_003357313.1| - 5.6 7.0 21.6 0.068 13.1 1.9 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain MFS_1 PF07690.11 gi|282164929|ref|YP_003357314.1| - 1.2e-50 172.1 60.6 1.7e-44 152.0 25.6 1.7 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|282164929|ref|YP_003357314.1| - 8.7e-12 44.3 10.8 8.7e-12 44.3 7.5 2.6 3 0 0 3 3 3 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|282164929|ref|YP_003357314.1| - 1.2e-08 33.7 33.5 8.7e-06 24.3 8.3 3.2 2 1 1 3 3 3 3 MFS/sugar transport protein MFS_3 PF05977.8 gi|282164929|ref|YP_003357314.1| - 0.00016 19.9 16.9 0.00035 18.8 11.7 1.5 1 1 0 1 1 1 1 Transmembrane secretion effector Pex24p PF06398.6 gi|282164929|ref|YP_003357314.1| - 0.6 8.8 8.7 1.6 7.4 0.1 2.7 2 1 0 2 2 2 0 Integral peroxisomal membrane peroxin Nitroreductase PF00881.19 gi|282164931|ref|YP_003357316.1| - 2.9e-31 108.5 0.0 3.5e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|282164931|ref|YP_003357316.1| - 0.00017 20.8 0.0 0.0022 17.2 0.0 2.3 2 1 0 2 2 2 1 Putative TM nitroreductase CMD PF02627.15 gi|282164932|ref|YP_003357317.1| - 6.9e-15 54.6 0.9 8.7e-15 54.3 0.6 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.8 gi|282164932|ref|YP_003357317.1| - 0.025 13.3 0.0 0.031 12.9 0.0 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) Clusterin PF01093.12 gi|282164932|ref|YP_003357317.1| - 0.068 11.9 0.1 0.071 11.9 0.0 1.1 1 0 0 1 1 1 0 Clusterin DUF504 PF04457.7 gi|282164933|ref|YP_003357318.1| - 2.5e-15 56.3 0.0 3.4e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF504) PBP PF01161.15 gi|282164935|ref|YP_003357320.1| - 5e-40 136.7 0.0 5.7e-40 136.5 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein NAD_binding_2 PF03446.10 gi|282164936|ref|YP_003357321.1| - 1.1e-34 119.6 0.3 1.6e-34 119.1 0.2 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|282164936|ref|YP_003357321.1| - 2.3e-08 33.4 0.1 3.5e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 6PGD PF00393.14 gi|282164936|ref|YP_003357321.1| - 3.6e-08 32.9 0.0 5.1e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.12 gi|282164936|ref|YP_003357321.1| - 6.3e-05 23.3 0.0 0.00011 22.5 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|282164936|ref|YP_003357321.1| - 0.0023 17.6 0.1 0.0071 16.0 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|282164936|ref|YP_003357321.1| - 0.0034 17.1 0.2 0.0067 16.1 0.1 1.5 1 0 0 1 1 1 1 Rossmann-like domain NAD_binding_10 PF13460.1 gi|282164936|ref|YP_003357321.1| - 0.0043 17.0 0.1 0.0062 16.5 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding PCP PF02429.10 gi|282164936|ref|YP_003357321.1| - 0.027 14.5 0.1 0.039 14.0 0.1 1.2 1 0 0 1 1 1 0 Peridinin-chlorophyll A binding protein GFO_IDH_MocA PF01408.17 gi|282164936|ref|YP_003357321.1| - 0.036 14.5 0.0 0.066 13.7 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|282164936|ref|YP_003357321.1| - 0.11 12.2 0.4 1.8 8.2 0.3 2.1 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF137 PF02006.11 gi|282164937|ref|YP_003357322.1| - 7.5e-76 253.4 0.8 9.3e-76 253.1 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 DUF2884 PF11101.3 gi|282164937|ref|YP_003357322.1| - 0.0016 17.8 0.1 0.0024 17.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2884) TPP_enzyme_M PF00205.17 gi|282164937|ref|YP_003357322.1| - 0.0079 15.9 0.8 0.26 11.0 0.5 2.8 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DUF883 PF05957.8 gi|282164938|ref|YP_003357323.1| - 8.2e-12 45.3 1.1 1.2e-11 44.8 0.8 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF883) Colicin PF01024.14 gi|282164938|ref|YP_003357323.1| - 0.0023 17.5 0.5 0.0025 17.4 0.4 1.1 1 0 0 1 1 1 1 Colicin pore forming domain Intein_splicing PF14890.1 gi|282164938|ref|YP_003357323.1| - 0.13 11.1 0.0 0.14 11.0 0.0 1.0 1 0 0 1 1 1 0 Intein splicing domain DUF3584 PF12128.3 gi|282164938|ref|YP_003357323.1| - 0.25 8.6 1.6 0.28 8.4 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF1469 PF07332.6 gi|282164939|ref|YP_003357324.1| - 0.0036 17.0 9.2 0.0049 16.5 6.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) IncA PF04156.9 gi|282164939|ref|YP_003357324.1| - 0.091 12.3 11.1 0.12 11.9 7.7 1.2 1 0 0 1 1 1 0 IncA protein Neurensin PF14927.1 gi|282164939|ref|YP_003357324.1| - 9.9 5.5 8.8 7.4 5.9 1.4 2.1 1 1 1 2 2 2 0 Neurensin DUF883 PF05957.8 gi|282164940|ref|YP_003357325.1| - 0.00065 20.0 0.0 0.0011 19.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF883) DUF111 PF01969.12 gi|282164941|ref|YP_003357326.1| - 1.1e-93 314.1 0.8 1.2e-93 314.0 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 APH PF01636.18 gi|282164941|ref|YP_003357326.1| - 0.023 14.4 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Phosphotransferase enzyme family Asn_synthase PF00733.16 gi|282164942|ref|YP_003357327.1| - 4.3e-07 29.7 0.1 1.5e-06 27.8 0.0 1.8 2 0 0 2 2 2 1 Asparagine synthase NAD_synthase PF02540.12 gi|282164942|ref|YP_003357327.1| - 6.3e-07 28.5 0.0 9.4e-06 24.6 0.0 2.1 2 0 0 2 2 2 1 NAD synthase tRNA_Me_trans PF03054.11 gi|282164942|ref|YP_003357327.1| - 0.0005 18.7 0.1 0.0025 16.4 0.1 2.1 2 1 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|282164942|ref|YP_003357327.1| - 0.00081 18.9 0.1 0.0018 17.7 0.1 1.6 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.14 gi|282164942|ref|YP_003357327.1| - 0.00085 18.4 0.0 0.004 16.2 0.0 1.8 2 0 0 2 2 2 1 Arginosuccinate synthase QueC PF06508.8 gi|282164942|ref|YP_003357327.1| - 0.002 17.4 0.0 0.017 14.4 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.14 gi|282164942|ref|YP_003357327.1| - 0.022 14.5 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family GTP_cyclohydro2 PF00925.15 gi|282164942|ref|YP_003357327.1| - 0.13 11.5 0.0 1 8.5 0.0 2.1 2 0 0 2 2 2 0 GTP cyclohydrolase II PDDEXK_1 PF12705.2 gi|282164943|ref|YP_003357328.1| - 9.8e-37 126.7 3.6 9.8e-37 126.7 2.5 1.5 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|282164943|ref|YP_003357328.1| - 3.5e-05 23.7 0.3 0.0032 17.4 0.1 2.6 1 1 0 2 2 2 2 Domain of unknown function DUF83 DUF2800 PF10926.3 gi|282164943|ref|YP_003357328.1| - 0.0046 16.1 0.0 0.0056 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) DEAD_assoc PF08494.6 gi|282164944|ref|YP_003357329.1| - 2.3e-49 167.6 0.6 1.1e-48 165.3 0.2 2.2 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.24 gi|282164944|ref|YP_003357329.1| - 9.8e-29 99.9 0.0 2.2e-28 98.8 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|282164944|ref|YP_003357329.1| - 6.4e-15 54.7 0.1 5.9e-14 51.6 0.0 2.4 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|282164944|ref|YP_003357329.1| - 1.5e-06 28.2 0.0 4.7e-06 26.5 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|282164944|ref|YP_003357329.1| - 0.011 15.8 0.0 0.1 12.7 0.0 2.7 2 1 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|282164944|ref|YP_003357329.1| - 0.047 12.5 0.0 0.86 8.4 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein Metallophos_2 PF12850.2 gi|282164945|ref|YP_003357330.1| - 0.0047 16.7 0.0 0.0072 16.1 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|282164945|ref|YP_003357330.1| - 0.0078 15.6 0.1 3.7 6.9 0.1 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Epimerase_2 PF02350.14 gi|282164945|ref|YP_003357330.1| - 0.12 11.1 0.0 0.53 9.0 0.0 1.9 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase Thioredoxin PF00085.15 gi|282164946|ref|YP_003357331.1| - 2.1e-13 49.8 0.0 4.4e-13 48.8 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_6 PF13848.1 gi|282164946|ref|YP_003357331.1| - 0.00011 22.0 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|282164946|ref|YP_003357331.1| - 0.00026 20.7 0.0 0.00062 19.5 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin domain TraF PF13728.1 gi|282164946|ref|YP_003357331.1| - 0.00042 19.8 0.1 0.00063 19.2 0.1 1.4 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.1 gi|282164946|ref|YP_003357331.1| - 0.001 19.2 0.2 0.0094 16.1 0.1 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|282164946|ref|YP_003357331.1| - 0.017 15.1 0.0 0.038 14.0 0.0 1.7 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_4 PF13462.1 gi|282164946|ref|YP_003357331.1| - 0.022 14.7 0.5 0.041 13.8 0.1 1.7 1 1 0 1 1 1 0 Thioredoxin DUF4307 PF14155.1 gi|282164946|ref|YP_003357331.1| - 0.035 13.8 0.1 0.06 13.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DSBA PF01323.15 gi|282164946|ref|YP_003357331.1| - 0.094 12.2 0.1 0.29 10.6 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Thioredoxin_8 PF13905.1 gi|282164946|ref|YP_003357331.1| - 0.13 12.3 0.0 0.94 9.6 0.0 2.0 1 1 0 1 1 1 0 Thioredoxin-like DsbD PF02683.10 gi|282164947|ref|YP_003357332.1| - 2.3e-40 138.4 17.9 2.8e-40 138.1 12.4 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|282164947|ref|YP_003357332.1| - 6.4e-18 65.2 15.1 7.6e-18 64.9 10.5 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region UPF0016 PF01169.14 gi|282164947|ref|YP_003357332.1| - 0.031 14.4 1.8 0.031 14.4 1.3 2.9 3 1 1 4 4 4 0 Uncharacterized protein family UPF0016 CarboxypepD_reg PF13620.1 gi|282164948|ref|YP_003357333.1| - 0.00019 21.4 2.6 0.00019 21.4 1.8 1.8 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain DEAD PF00270.24 gi|282164949|ref|YP_003357334.1| - 2.3e-29 102.0 0.0 7.1e-29 100.4 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Sec63 PF02889.11 gi|282164949|ref|YP_003357334.1| - 4.4e-22 78.6 0.0 6.6e-22 78.1 0.0 1.3 1 0 0 1 1 1 1 Sec63 Brl domain HRDC PF00570.18 gi|282164949|ref|YP_003357334.1| - 6.1e-21 73.9 0.1 2e-17 62.6 0.0 3.6 3 0 0 3 3 3 1 HRDC domain Helicase_C PF00271.26 gi|282164949|ref|YP_003357334.1| - 1.1e-10 41.2 0.0 3.9e-10 39.4 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF91 PF01939.11 gi|282164949|ref|YP_003357334.1| - 2.2e-07 30.3 0.0 6.2e-07 28.8 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF91 ResIII PF04851.10 gi|282164949|ref|YP_003357334.1| - 7e-07 29.2 0.0 1.4e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|282164949|ref|YP_003357334.1| - 1.7e-06 28.1 5.3 9.7e-06 25.6 1.3 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_22 PF13401.1 gi|282164949|ref|YP_003357334.1| - 0.0085 16.2 0.0 0.028 14.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|282164949|ref|YP_003357334.1| - 0.0096 15.1 0.0 0.14 11.4 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein DUF4332 PF14229.1 gi|282164949|ref|YP_003357334.1| - 0.01 15.8 0.2 0.11 12.4 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4332) T2SE PF00437.15 gi|282164949|ref|YP_003357334.1| - 0.014 14.3 0.0 0.037 12.9 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein DNA_pol_lambd_f PF10391.4 gi|282164949|ref|YP_003357334.1| - 0.057 12.9 0.0 6.9 6.2 0.0 2.5 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda YjbR PF04237.8 gi|282164949|ref|YP_003357334.1| - 0.13 12.6 0.0 0.38 11.1 0.0 1.8 1 0 0 1 1 1 0 YjbR HHH PF00633.18 gi|282164949|ref|YP_003357334.1| - 0.49 10.1 4.1 11 5.9 0.2 3.2 3 0 0 3 3 3 0 Helix-hairpin-helix motif MogR_DNAbind PF12181.3 gi|282164950|ref|YP_003357335.1| - 0.086 12.6 0.2 0.15 11.8 0.2 1.4 1 0 0 1 1 1 0 DNA binding domain of the motility gene repressor (MogR) DUF3791 PF12668.2 gi|282164950|ref|YP_003357335.1| - 0.12 12.0 2.3 0.15 11.6 0.1 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3791) Pyridox_ox_2 PF12900.2 gi|282164951|ref|YP_003357336.1| - 4.4e-24 84.9 0.0 5.1e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|282164951|ref|YP_003357336.1| - 3.9e-09 36.4 0.0 5.4e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase GATase_7 PF13537.1 gi|282164952|ref|YP_003357337.1| - 3.6e-26 91.3 0.0 5.8e-26 90.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|282164952|ref|YP_003357337.1| - 5.3e-25 87.8 0.0 1.4e-19 70.0 0.0 2.9 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|282164952|ref|YP_003357337.1| - 4.8e-24 84.8 0.0 8.7e-24 83.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|282164952|ref|YP_003357337.1| - 8.6e-12 44.8 0.3 1.9e-11 43.7 0.2 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|282164952|ref|YP_003357337.1| - 1.7e-07 30.1 0.0 2.7e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.14 gi|282164953|ref|YP_003357338.1| - 2e-22 78.7 10.5 2.2e-22 78.5 7.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e Ribosomal_L32p PF01783.18 gi|282164953|ref|YP_003357338.1| - 0.007 16.5 1.5 0.012 15.7 1.0 1.5 1 0 0 1 1 1 1 Ribosomal L32p protein family DZR PF12773.2 gi|282164953|ref|YP_003357338.1| - 0.0097 15.7 1.1 0.012 15.3 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|282164953|ref|YP_003357338.1| - 0.029 13.5 4.4 0.052 12.7 3.0 1.5 1 1 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|282164953|ref|YP_003357338.1| - 0.11 12.2 2.5 0.12 12.1 1.7 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like FYVE_2 PF02318.11 gi|282164953|ref|YP_003357338.1| - 0.21 11.4 3.5 0.25 11.2 2.4 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-C4pol PF14260.1 gi|282164953|ref|YP_003357338.1| - 0.36 10.8 2.9 6.2 6.8 0.3 2.0 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf-C2H2_4 PF13894.1 gi|282164953|ref|YP_003357338.1| - 0.47 10.8 8.5 15 6.1 5.9 2.4 1 1 0 1 1 1 0 C2H2-type zinc finger RRN7 PF11781.3 gi|282164953|ref|YP_003357338.1| - 0.49 9.9 3.5 11 5.6 0.4 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF2688 PF10892.3 gi|282164953|ref|YP_003357338.1| - 0.86 9.3 4.8 0.34 10.5 1.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) zf-C2H2_3 PF13878.1 gi|282164953|ref|YP_003357338.1| - 1.3 8.6 4.6 11 5.7 1.4 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Nudix_N_2 PF14803.1 gi|282164953|ref|YP_003357338.1| - 3.4 7.4 6.5 8.7 6.1 0.7 2.2 1 1 1 2 2 2 0 Nudix N-terminal LSM PF01423.17 gi|282164954|ref|YP_003357339.1| - 5.6e-24 83.4 0.1 6.2e-24 83.3 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|282164954|ref|YP_003357339.1| - 0.0024 17.7 0.0 0.0031 17.4 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain ATP-synt_C PF00137.16 gi|282164956|ref|YP_003357341.1| - 9.6e-14 51.0 13.9 1.2e-13 50.7 9.6 1.0 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.13 gi|282164957|ref|YP_003357342.1| - 1.1e-16 60.7 8.2 3.6e-16 59.0 5.7 1.7 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|282164957|ref|YP_003357342.1| - 0.85 9.4 15.3 2.1 8.1 8.7 2.3 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DUF883 PF05957.8 gi|282164957|ref|YP_003357342.1| - 3.8 7.9 14.2 0.21 12.0 2.9 2.8 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) vATP-synt_AC39 PF01992.11 gi|282164958|ref|YP_003357343.1| - 3.2e-61 207.3 0.4 3.6e-61 207.1 0.3 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.12 gi|282164959|ref|YP_003357344.1| - 5.3e-17 61.9 0.0 6e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Phasin PF05597.6 gi|282164959|ref|YP_003357344.1| - 0.017 14.9 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF162 PF02589.10 gi|282164959|ref|YP_003357344.1| - 0.035 13.6 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised ACR, YkgG family COG1556 ATP-synt_ab PF00006.20 gi|282164960|ref|YP_003357345.1| - 9.9e-93 309.5 0.0 1.4e-92 309.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|282164960|ref|YP_003357345.1| - 3.5e-17 62.8 0.1 6.1e-17 62.1 0.1 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|282164960|ref|YP_003357345.1| - 6.1e-13 48.7 1.2 6.1e-13 48.7 0.8 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.1 gi|282164960|ref|YP_003357345.1| - 0.072 12.8 0.1 4 7.2 0.0 2.8 3 0 0 3 3 3 0 RnfC Barrel sandwich hybrid domain ATP-synt_ab PF00006.20 gi|282164961|ref|YP_003357346.1| - 4.8e-58 196.2 0.0 6e-58 195.8 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|282164961|ref|YP_003357346.1| - 3.1e-14 53.4 0.0 5.6e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|282164961|ref|YP_003357346.1| - 3.6e-09 36.7 0.8 7.9e-09 35.6 0.5 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|282164961|ref|YP_003357346.1| - 3.2e-08 33.3 0.6 8.5e-08 32.0 0.4 1.7 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_D PF01813.12 gi|282164962|ref|YP_003357347.1| - 6e-55 185.8 11.8 6.8e-55 185.6 8.2 1.0 1 0 0 1 1 1 1 ATP synthase subunit D PGC7_Stella PF15549.1 gi|282164962|ref|YP_003357347.1| - 3.6 7.5 5.5 0.77 9.7 0.8 1.9 2 1 0 2 2 2 0 PGC7/Stella/Dppa3 domain V_ATPase_I PF01496.14 gi|282164963|ref|YP_003357348.1| - 4.3e-79 266.2 10.6 6e-52 176.5 0.3 2.6 2 1 0 2 2 2 2 V-type ATPase 116kDa subunit family HrpE PF06188.7 gi|282164964|ref|YP_003357349.1| - 0.12 12.0 6.7 0.15 11.7 4.6 1.2 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DivIVA PF05103.8 gi|282164964|ref|YP_003357349.1| - 0.17 11.9 6.3 0.2 11.7 4.4 1.3 1 0 0 1 1 1 0 DivIVA protein ATP-synt_B PF00430.13 gi|282164964|ref|YP_003357349.1| - 0.99 9.2 15.2 1.4 8.6 10.4 1.4 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) Nop25 PF09805.4 gi|282164964|ref|YP_003357349.1| - 1.1 9.3 5.7 1.2 9.2 3.9 1.2 1 0 0 1 1 1 0 Nucleolar protein 12 (25kDa) PUA PF01472.15 gi|282164966|ref|YP_003357351.1| - 1.5e-19 69.4 2.8 2.8e-19 68.6 1.9 1.4 1 0 0 1 1 1 1 PUA domain DUF3137 PF11335.3 gi|282164966|ref|YP_003357351.1| - 0.076 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3137) DUF552 PF04472.7 gi|282164967|ref|YP_003357352.1| - 1.4e-14 53.7 1.0 1.7e-14 53.4 0.4 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF552) zf-ZPR1 PF03367.8 gi|282164968|ref|YP_003357353.1| - 1.6e-39 134.6 0.0 1.9e-39 134.3 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.1 gi|282164968|ref|YP_003357353.1| - 2.8 8.3 6.3 8.9 6.7 4.4 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar HEAT_2 PF13646.1 gi|282164969|ref|YP_003357354.1| - 3.5e-05 24.0 1.0 0.0012 19.0 0.1 3.2 2 1 1 3 3 3 1 HEAT repeats FANCI_S2 PF14676.1 gi|282164969|ref|YP_003357354.1| - 0.073 12.9 0.9 5.6 6.8 0.0 2.2 1 1 1 2 2 2 0 FANCI solenoid 2 DUF35_N PF12172.3 gi|282164969|ref|YP_003357354.1| - 0.38 10.7 2.9 0.76 9.7 2.0 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RuvC PF02075.12 gi|282164970|ref|YP_003357355.1| - 9.8e-56 187.7 0.2 1.1e-55 187.5 0.2 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC RuvA_N PF01330.16 gi|282164971|ref|YP_003357356.1| - 2.1e-14 53.0 0.1 4.9e-14 51.8 0.1 1.6 1 0 0 1 1 1 1 RuvA N terminal domain RuvA_C PF07499.8 gi|282164971|ref|YP_003357356.1| - 1.3e-12 47.6 1.1 1.3e-12 47.6 0.7 1.7 2 0 0 2 2 2 1 RuvA, C-terminal domain HHH_5 PF14520.1 gi|282164971|ref|YP_003357356.1| - 1.8e-11 44.0 1.3 4.6e-11 42.7 0.2 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|282164971|ref|YP_003357356.1| - 4.5e-07 29.1 0.3 0.035 13.7 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif Transposase_20 PF02371.11 gi|282164971|ref|YP_003357356.1| - 0.00019 21.4 0.1 0.3 11.2 0.1 2.4 2 0 0 2 2 2 2 Transposase IS116/IS110/IS902 family HHH_3 PF12836.2 gi|282164971|ref|YP_003357356.1| - 0.00044 20.1 0.1 1.1 9.2 0.0 3.1 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|282164971|ref|YP_003357356.1| - 0.0022 17.8 0.1 1.2 9.0 0.0 2.9 2 1 1 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|282164971|ref|YP_003357356.1| - 0.0036 16.8 0.0 1.3 8.6 0.0 2.5 2 0 0 2 2 2 2 Fingers domain of DNA polymerase lambda RuvB_N PF05496.7 gi|282164972|ref|YP_003357357.1| - 8.8e-118 391.4 0.1 1.2e-117 390.9 0.1 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus RuvB_C PF05491.8 gi|282164972|ref|YP_003357357.1| - 2e-32 110.6 0.0 3.8e-32 109.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus AAA PF00004.24 gi|282164972|ref|YP_003357357.1| - 5.6e-21 75.1 0.0 1.3e-20 73.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|282164972|ref|YP_003357357.1| - 6.4e-10 38.9 0.1 2.8e-08 33.5 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|282164972|ref|YP_003357357.1| - 1.1e-06 27.6 0.4 2e-05 23.5 0.0 2.5 2 1 0 2 2 2 1 TIP49 C-terminus AAA_22 PF13401.1 gi|282164972|ref|YP_003357357.1| - 2.2e-05 24.6 0.9 0.015 15.4 0.0 2.9 2 2 1 3 3 3 1 AAA domain DUF815 PF05673.8 gi|282164972|ref|YP_003357357.1| - 5.2e-05 22.2 0.0 0.0092 14.9 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.16 gi|282164972|ref|YP_003357357.1| - 0.00011 21.4 0.2 0.029 13.5 0.0 2.5 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|282164972|ref|YP_003357357.1| - 0.00012 22.8 0.1 0.00042 21.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|282164972|ref|YP_003357357.1| - 0.00013 21.9 0.0 0.00031 20.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|282164972|ref|YP_003357357.1| - 0.00014 21.5 0.1 0.00042 20.0 0.0 1.9 2 0 0 2 2 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|282164972|ref|YP_003357357.1| - 0.00026 20.4 0.0 0.42 10.0 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_16 PF13191.1 gi|282164972|ref|YP_003357357.1| - 0.00027 20.9 0.0 0.0015 18.5 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_3 PF07726.6 gi|282164972|ref|YP_003357357.1| - 0.00036 20.1 0.0 0.0078 15.8 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|282164972|ref|YP_003357357.1| - 0.00056 20.0 0.0 0.00098 19.2 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_24 PF13479.1 gi|282164972|ref|YP_003357357.1| - 0.00071 19.2 0.2 0.0063 16.1 0.2 2.1 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|282164972|ref|YP_003357357.1| - 0.0016 18.1 0.6 0.11 12.1 0.0 2.4 1 1 1 2 2 2 1 NTPase Bac_DnaA PF00308.13 gi|282164972|ref|YP_003357357.1| - 0.0024 17.5 0.0 0.049 13.2 0.0 2.6 3 0 0 3 3 3 1 Bacterial dnaA protein Sigma54_activ_2 PF14532.1 gi|282164972|ref|YP_003357357.1| - 0.0029 17.6 0.0 0.0047 16.9 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|282164972|ref|YP_003357357.1| - 0.0032 17.7 2.5 0.013 15.8 0.1 2.9 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|282164972|ref|YP_003357357.1| - 0.0034 16.1 0.0 0.0046 15.6 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|282164972|ref|YP_003357357.1| - 0.0088 15.9 0.0 0.041 13.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|282164972|ref|YP_003357357.1| - 0.011 14.5 0.0 0.027 13.3 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.7 gi|282164972|ref|YP_003357357.1| - 0.018 14.7 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain T2SE PF00437.15 gi|282164972|ref|YP_003357357.1| - 0.022 13.6 0.9 0.49 9.2 0.0 2.7 2 1 1 3 3 3 0 Type II/IV secretion system protein Resolvase PF00239.16 gi|282164972|ref|YP_003357357.1| - 0.025 14.4 0.0 0.14 12.0 0.0 2.2 1 1 1 2 2 2 0 Resolvase, N terminal domain UPF0079 PF02367.12 gi|282164972|ref|YP_003357357.1| - 0.035 13.7 0.0 0.072 12.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ResIII PF04851.10 gi|282164972|ref|YP_003357357.1| - 0.038 13.8 0.3 3.2 7.5 0.2 2.3 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Parvo_NS1 PF01057.12 gi|282164972|ref|YP_003357357.1| - 0.044 12.6 0.0 0.079 11.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_25 PF13481.1 gi|282164972|ref|YP_003357357.1| - 0.06 12.7 0.2 0.28 10.5 0.1 2.0 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|282164972|ref|YP_003357357.1| - 0.063 12.3 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin IstB_IS21 PF01695.12 gi|282164972|ref|YP_003357357.1| - 0.068 12.5 0.0 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.22 gi|282164972|ref|YP_003357357.1| - 0.07 13.4 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter MCM PF00493.18 gi|282164972|ref|YP_003357357.1| - 0.11 11.2 0.4 2.2 7.0 0.2 2.4 1 1 0 1 1 1 0 MCM2/3/5 family AAA_21 PF13304.1 gi|282164972|ref|YP_003357357.1| - 0.15 11.9 0.7 1.4 8.8 0.1 2.4 2 1 0 2 2 2 0 AAA domain DUF3095 PF11294.3 gi|282164973|ref|YP_003357358.1| - 0.0021 17.1 0.0 0.0026 16.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3095) T2SF PF00482.18 gi|282164973|ref|YP_003357358.1| - 0.015 15.1 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F 7TM_GPCR_Srv PF10323.4 gi|282164973|ref|YP_003357358.1| - 0.016 14.3 0.4 0.019 14.0 0.3 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srv DUF3260 PF11658.3 gi|282164973|ref|YP_003357358.1| - 0.019 13.1 0.3 0.021 13.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3260) Shugoshin_N PF07558.6 gi|282164973|ref|YP_003357358.1| - 0.022 14.4 3.5 0.08 12.6 2.4 1.9 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region AcylCoA_dehyd_C PF12186.3 gi|282164973|ref|YP_003357358.1| - 0.023 14.5 0.9 0.073 12.9 0.3 2.0 2 1 0 2 2 2 0 Acyl-CoA dehydrogenase C terminal Chordopox_A33R PF05966.7 gi|282164973|ref|YP_003357358.1| - 0.032 12.9 0.2 0.041 12.6 0.1 1.1 1 0 0 1 1 1 0 Chordopoxvirus A33R protein DUF904 PF06005.7 gi|282164973|ref|YP_003357358.1| - 0.05 13.8 3.3 0.054 13.7 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF904) GPI2 PF06432.6 gi|282164973|ref|YP_003357358.1| - 0.079 12.2 0.1 0.089 12.1 0.1 1.1 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase FtsL PF04999.8 gi|282164973|ref|YP_003357358.1| - 0.11 12.2 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Cell division protein FtsL Herpes_BLRF2 PF05812.7 gi|282164973|ref|YP_003357358.1| - 0.13 12.0 1.2 1.4 8.7 0.0 2.6 2 1 1 3 3 3 0 Herpesvirus BLRF2 protein DUF2681 PF10883.3 gi|282164973|ref|YP_003357358.1| - 0.15 12.2 2.8 0.092 12.9 0.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2681) NYD-SP28_assoc PF14775.1 gi|282164973|ref|YP_003357358.1| - 0.6 9.8 3.7 11 5.8 0.3 2.4 1 1 1 2 2 2 0 Sperm tail C-terminal domain CBS PF00571.23 gi|282164974|ref|YP_003357359.1| - 3e-43 145.3 11.0 5.8e-14 51.5 1.0 4.2 4 0 0 4 4 4 4 CBS domain Mrr_cat PF04471.7 gi|282164975|ref|YP_003357360.1| - 2.4e-05 24.1 0.0 3.1e-05 23.7 0.0 1.5 1 1 0 1 1 1 1 Restriction endonuclease DUF234 PF03008.9 gi|282164975|ref|YP_003357360.1| - 0.067 13.3 0.0 0.098 12.8 0.0 1.2 1 0 0 1 1 1 0 Archaea bacterial proteins of unknown function NERD PF08378.6 gi|282164975|ref|YP_003357360.1| - 0.068 13.4 0.0 0.08 13.2 0.0 1.2 1 0 0 1 1 1 0 Nuclease-related domain Hjc PF01870.13 gi|282164975|ref|YP_003357360.1| - 0.13 11.8 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Lumazine_bd PF12870.2 gi|282164976|ref|YP_003357361.1| - 0.00052 20.0 0.1 0.0012 18.8 0.1 1.6 1 1 0 1 1 1 1 Lumazine-binding domain NLBH PF05211.7 gi|282164976|ref|YP_003357361.1| - 0.043 13.0 0.0 0.058 12.6 0.0 1.1 1 0 0 1 1 1 0 Neuraminyllactose-binding hemagglutinin precursor (NLBH) Cpn60_TCP1 PF00118.19 gi|282164977|ref|YP_003357362.1| - 2.2e-153 511.3 14.6 2.5e-153 511.2 10.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF521 PF04412.8 gi|282164978|ref|YP_003357363.1| - 3.4e-150 500.0 0.0 4.3e-150 499.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF521) CoA_binding_2 PF13380.1 gi|282164978|ref|YP_003357363.1| - 0.00013 22.1 0.0 0.00035 20.7 0.0 1.7 1 0 0 1 1 1 1 CoA binding domain Fer4_12 PF13353.1 gi|282164978|ref|YP_003357363.1| - 0.13 12.3 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF126 PF01989.11 gi|282164979|ref|YP_003357364.1| - 7e-37 124.9 0.6 1.2e-36 124.2 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF126 PEP-utilizers PF00391.18 gi|282164979|ref|YP_003357364.1| - 0.084 12.4 0.7 0.15 11.6 0.5 1.4 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain ArgK PF03308.11 gi|282164979|ref|YP_003357364.1| - 0.099 11.3 0.8 0.12 11.0 0.6 1.1 1 0 0 1 1 1 0 ArgK protein Peptidase_M50 PF02163.17 gi|282164980|ref|YP_003357365.1| - 2e-17 62.8 7.2 2.6e-17 62.4 1.6 2.5 2 1 0 2 2 2 1 Peptidase family M50 DUF3494 PF11999.3 gi|282164980|ref|YP_003357365.1| - 0.062 12.9 0.3 0.11 12.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3494) CTP_transf_2 PF01467.21 gi|282164981|ref|YP_003357366.1| - 7.7e-21 74.7 0.0 9.7e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|282164981|ref|YP_003357366.1| - 0.018 14.6 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 FAD synthetase Citrate_ly_lig PF08218.6 gi|282164981|ref|YP_003357366.1| - 0.021 14.3 0.0 0.056 12.8 0.0 1.7 2 0 0 2 2 2 0 Citrate lyase ligase C-terminal domain DUF2229 PF09989.4 gi|282164981|ref|YP_003357366.1| - 0.13 11.7 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) CDP-OH_P_transf PF01066.16 gi|282164982|ref|YP_003357367.1| - 6.5e-16 58.4 10.2 1.5e-15 57.3 7.1 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase PHP PF02811.14 gi|282164983|ref|YP_003357368.1| - 1.4e-14 54.2 0.0 2e-14 53.7 0.0 1.3 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|282164983|ref|YP_003357368.1| - 0.0052 16.2 0.1 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 PHP-associated TetR_N PF00440.18 gi|282164984|ref|YP_003357369.1| - 2.6e-20 71.7 0.3 5.5e-20 70.7 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family WHG PF13305.1 gi|282164984|ref|YP_003357369.1| - 5.6e-05 23.6 0.1 0.00016 22.1 0.0 1.8 2 0 0 2 2 2 1 WHG domain RIC1 PF07064.8 gi|282164984|ref|YP_003357369.1| - 0.049 13.0 0.2 0.076 12.4 0.1 1.2 1 0 0 1 1 1 0 RIC1 HTH_7 PF02796.10 gi|282164984|ref|YP_003357369.1| - 0.093 12.6 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_3 PF01381.17 gi|282164984|ref|YP_003357369.1| - 0.24 11.2 1.1 1.6 8.6 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix CCG PF02754.11 gi|282164985|ref|YP_003357370.1| - 1.2e-22 79.6 7.0 1.7e-16 59.9 0.1 2.9 3 0 0 3 3 3 2 Cysteine-rich domain SOR_SNZ PF01680.12 gi|282164985|ref|YP_003357370.1| - 0.077 12.5 0.2 0.23 11.0 0.0 1.7 2 0 0 2 2 2 0 SOR/SNZ family DUF2757 PF10955.3 gi|282164985|ref|YP_003357370.1| - 0.97 9.6 0.0 0.97 9.6 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2757) TFIIS_C PF01096.13 gi|282164986|ref|YP_003357371.1| - 2.3e-18 65.5 11.4 6e-18 64.2 4.4 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|282164986|ref|YP_003357371.1| - 1.6e-05 24.6 4.1 0.00011 21.9 0.7 2.3 2 0 0 2 2 2 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|282164986|ref|YP_003357371.1| - 5e-05 22.8 1.8 0.025 14.2 0.6 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|282164986|ref|YP_003357371.1| - 0.00039 20.2 1.5 0.036 13.9 0.1 2.2 1 1 1 2 2 2 1 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.5 gi|282164986|ref|YP_003357371.1| - 0.0078 16.1 8.5 2.3 8.2 0.0 3.2 3 0 0 3 3 3 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|282164986|ref|YP_003357371.1| - 0.011 14.9 5.8 1.4 8.2 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|282164986|ref|YP_003357371.1| - 0.016 15.5 1.5 0.25 11.6 0.5 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|282164986|ref|YP_003357371.1| - 0.023 14.2 9.6 0.43 10.2 0.4 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|282164986|ref|YP_003357371.1| - 0.023 14.3 9.6 0.66 9.7 0.6 3.2 3 0 0 3 3 3 0 zinc-ribbon domain DUF3797 PF12677.2 gi|282164986|ref|YP_003357371.1| - 0.027 14.0 5.1 0.54 9.9 0.3 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3797) RNA_POL_M_15KD PF02150.11 gi|282164986|ref|YP_003357371.1| - 0.037 13.7 8.6 0.62 9.8 0.0 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit Terminase_GpA PF05876.7 gi|282164986|ref|YP_003357371.1| - 0.05 11.9 1.7 0.062 11.6 1.2 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-H2C2_2 PF13465.1 gi|282164986|ref|YP_003357371.1| - 0.054 13.8 3.6 7.5 7.0 0.1 3.1 3 0 0 3 3 3 0 Zinc-finger double domain zf-ISL3 PF14690.1 gi|282164986|ref|YP_003357371.1| - 0.06 13.3 3.8 8.1 6.5 0.1 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_S27e PF01667.12 gi|282164986|ref|YP_003357371.1| - 0.064 12.8 3.4 3.8 7.1 0.1 3.0 3 0 0 3 3 3 0 Ribosomal protein S27 ArfGap PF01412.13 gi|282164986|ref|YP_003357371.1| - 0.064 13.0 1.6 0.064 13.0 0.3 1.7 2 0 0 2 2 1 0 Putative GTPase activating protein for Arf DZR PF12773.2 gi|282164986|ref|YP_003357371.1| - 0.069 12.9 8.2 11 5.8 5.8 2.4 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|282164986|ref|YP_003357371.1| - 0.09 12.4 5.1 0.27 10.9 0.5 2.3 1 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family PolC_DP2 PF03833.8 gi|282164986|ref|YP_003357371.1| - 0.098 10.3 0.6 0.088 10.4 0.4 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 A2L_zn_ribbon PF08792.5 gi|282164986|ref|YP_003357371.1| - 0.14 11.6 5.3 6.2 6.4 0.0 3.0 3 0 0 3 3 3 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|282164986|ref|YP_003357371.1| - 0.14 11.6 6.8 2.1 7.8 0.1 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|282164986|ref|YP_003357371.1| - 0.15 11.6 14.5 1.5 8.4 0.2 3.2 3 0 0 3 3 3 0 zinc-ribbon domain FdhE PF04216.7 gi|282164986|ref|YP_003357371.1| - 0.28 10.8 3.4 0.076 12.7 0.5 1.5 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation Baculo_LEF5_C PF11792.3 gi|282164986|ref|YP_003357371.1| - 0.36 10.2 0.2 0.36 10.2 0.1 2.5 3 0 0 3 3 2 0 Baculoviridae late expression factor 5 C-terminal domain UPF0547 PF10571.4 gi|282164986|ref|YP_003357371.1| - 0.47 10.1 7.7 6.7 6.5 0.3 3.1 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.1 gi|282164986|ref|YP_003357371.1| - 0.66 9.2 8.9 0.12 11.6 2.5 2.2 2 1 0 2 2 2 0 Transcription factor zinc-finger Rubredoxin PF00301.15 gi|282164986|ref|YP_003357371.1| - 0.79 9.6 7.2 2.1 8.2 0.2 3.1 3 0 0 3 3 3 0 Rubredoxin Ogr_Delta PF04606.7 gi|282164986|ref|YP_003357371.1| - 0.83 9.3 4.0 0.49 10.0 0.3 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-DNA_Pol PF08996.5 gi|282164986|ref|YP_003357371.1| - 0.86 8.9 3.6 0.31 10.3 0.2 1.8 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger Desulfoferrod_N PF06397.7 gi|282164986|ref|YP_003357371.1| - 0.99 8.8 6.2 9.7 5.6 0.1 3.1 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain CpXC PF14353.1 gi|282164986|ref|YP_003357371.1| - 0.99 9.3 6.1 7 6.6 0.8 2.7 1 1 1 2 2 2 0 CpXC protein zf-C2H2_4 PF13894.1 gi|282164986|ref|YP_003357371.1| - 1.1 9.7 4.0 37 4.9 0.1 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger zf-IS66 PF13005.2 gi|282164986|ref|YP_003357371.1| - 1.3 9.0 6.6 5 7.1 0.3 3.1 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.1 gi|282164986|ref|YP_003357371.1| - 1.3 8.7 4.9 24 4.7 0.0 3.1 3 0 0 3 3 3 0 Nudix N-terminal DUF35_N PF12172.3 gi|282164986|ref|YP_003357371.1| - 1.5 8.8 6.3 20 5.2 0.1 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2H2_3 PF13878.1 gi|282164986|ref|YP_003357371.1| - 1.6 8.3 4.1 31 4.2 0.1 2.9 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO Zn_ribbon_recom PF13408.1 gi|282164986|ref|YP_003357371.1| - 1.7 8.9 8.3 3.8 7.8 0.1 2.9 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain RRN7 PF11781.3 gi|282164986|ref|YP_003357371.1| - 2.1 7.9 6.8 4.6 6.8 0.3 3.0 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 TF_Zn_Ribbon PF08271.7 gi|282164986|ref|YP_003357371.1| - 2.4 7.5 9.0 2.7 7.4 2.8 3.0 2 1 0 2 2 2 0 TFIIB zinc-binding zf-C2H2 PF00096.21 gi|282164986|ref|YP_003357371.1| - 2.5 8.6 9.5 17 6.0 0.3 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type DUF2072 PF09845.4 gi|282164986|ref|YP_003357371.1| - 2.6 7.9 5.4 32 4.4 0.1 2.9 2 1 1 3 3 3 0 Zn-ribbon containing protein (DUF2072) zf-tcix PF14952.1 gi|282164986|ref|YP_003357371.1| - 3.3 7.1 11.1 11 5.4 0.4 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-Mss51 PF13824.1 gi|282164986|ref|YP_003357371.1| - 3.5 7.5 6.6 21 5.0 0.3 3.0 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS91 PF14319.1 gi|282164986|ref|YP_003357371.1| - 5.4 6.5 8.1 1.9 8.0 1.2 2.7 2 1 1 3 3 3 0 Transposase zinc-binding domain YhfH PF14149.1 gi|282164986|ref|YP_003357371.1| - 5.7 6.8 13.9 7.9 6.3 0.7 3.4 3 1 0 3 3 3 0 YhfH-like protein PCNA_N PF00705.13 gi|282164987|ref|YP_003357372.1| - 2.9e-15 55.9 0.2 5.9e-15 54.9 0.2 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|282164987|ref|YP_003357372.1| - 2.1e-11 43.8 0.1 1.9e-09 37.5 0.0 2.8 3 0 0 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|282164987|ref|YP_003357372.1| - 2.6e-05 23.1 0.1 0.0075 15.0 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.8 gi|282164987|ref|YP_003357372.1| - 0.00042 19.5 0.0 0.0018 17.4 0.0 1.8 2 0 0 2 2 2 1 Rad9 DNA_pol3_beta PF00712.14 gi|282164987|ref|YP_003357372.1| - 0.0054 16.6 0.1 0.041 13.7 0.0 2.3 2 0 0 2 2 2 1 DNA polymerase III beta subunit, N-terminal domain DNA_pol3_beta_3 PF02768.10 gi|282164987|ref|YP_003357372.1| - 0.24 10.9 2.1 4.4 6.8 0.3 3.2 3 1 0 3 3 3 0 DNA polymerase III beta subunit, C-terminal domain KGG PF10685.4 gi|282164988|ref|YP_003357373.1| - 3.7e-05 23.5 12.5 0.067 13.1 2.0 3.3 1 1 1 2 2 2 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282164988|ref|YP_003357373.1| - 0.034 14.4 5.5 0.36 11.1 3.5 2.0 1 1 0 1 1 1 0 Small hydrophilic plant seed protein SASP PF00269.15 gi|282164988|ref|YP_003357373.1| - 0.28 11.0 3.7 20 5.1 2.6 2.1 1 1 0 1 1 1 0 Small, acid-soluble spore proteins, alpha/beta type DNA_primase_lrg PF04104.9 gi|282164989|ref|YP_003357374.1| - 2.5e-33 115.4 0.0 5.6e-33 114.3 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Peptidase_M29 PF02073.10 gi|282164991|ref|YP_003357376.1| - 3.9e-19 68.6 0.0 2.7e-17 62.6 0.0 2.7 2 1 0 2 2 2 2 Thermophilic metalloprotease (M29) DHH PF01368.15 gi|282164992|ref|YP_003357377.1| - 1.7e-12 47.1 0.3 4.2e-12 45.9 0.2 1.7 1 0 0 1 1 1 1 DHH family DnaJ_CXXCXGXG PF00684.14 gi|282164992|ref|YP_003357377.1| - 3.3e-06 27.0 16.5 3.3e-06 27.0 11.4 2.5 1 1 1 2 2 2 2 DnaJ central domain S1 PF00575.18 gi|282164992|ref|YP_003357377.1| - 3.8e-06 26.9 0.2 1.1e-05 25.4 0.2 1.8 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti-codon PF01336.20 gi|282164992|ref|YP_003357377.1| - 8.6e-06 25.5 0.0 4e-05 23.3 0.0 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.1 gi|282164992|ref|YP_003357377.1| - 0.0017 18.1 0.0 0.0048 16.7 0.0 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1_2 PF13509.1 gi|282164992|ref|YP_003357377.1| - 0.0041 17.0 0.0 0.0089 15.9 0.0 1.5 1 0 0 1 1 1 1 S1 domain DZR PF12773.2 gi|282164992|ref|YP_003357377.1| - 0.37 10.6 22.2 0.022 14.5 8.6 2.6 2 0 0 2 2 2 0 Double zinc ribbon DUF2116 PF09889.4 gi|282164992|ref|YP_003357377.1| - 0.44 10.3 2.2 0.99 9.2 1.5 1.5 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Yip1 PF04893.12 gi|282164994|ref|YP_003357379.1| - 0.0026 17.2 1.8 0.0035 16.8 1.2 1.1 1 0 0 1 1 1 1 Yip1 domain bPH_3 PF14470.1 gi|282164994|ref|YP_003357379.1| - 0.19 12.0 0.5 1 9.6 0.0 2.3 2 1 0 2 2 2 0 Bacterial PH domain ALIX_LYPXL_bnd PF13949.1 gi|282164995|ref|YP_003357380.1| - 0.0027 16.7 1.4 0.0029 16.6 1.0 1.0 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV DUF4319 PF14203.1 gi|282164995|ref|YP_003357380.1| - 0.027 14.0 0.5 3.6 7.1 0.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4319) Exonuc_V_gamma PF04257.9 gi|282164995|ref|YP_003357380.1| - 0.034 12.1 0.2 0.04 11.9 0.1 1.0 1 0 0 1 1 1 0 Exodeoxyribonuclease V, gamma subunit SH3BP5 PF05276.9 gi|282164995|ref|YP_003357380.1| - 0.047 13.0 0.5 0.059 12.6 0.4 1.1 1 0 0 1 1 1 0 SH3 domain-binding protein 5 (SH3BP5) MCPsignal PF00015.16 gi|282164995|ref|YP_003357380.1| - 0.059 12.9 0.1 0.081 12.4 0.1 1.2 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Syntaxin_2 PF14523.1 gi|282164995|ref|YP_003357380.1| - 0.21 11.6 2.2 0.76 9.8 1.5 1.8 1 1 0 1 1 1 0 Syntaxin-like protein XH PF03469.9 gi|282164996|ref|YP_003357381.1| - 0.078 12.6 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 XH domain RelB_N PF12910.2 gi|282164996|ref|YP_003357381.1| - 0.13 11.6 0.1 0.28 10.5 0.0 1.5 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin stability system N-terminal MtN3_slv PF03083.11 gi|282164997|ref|YP_003357382.1| - 1.4e-08 34.4 1.0 1.4e-08 34.4 0.7 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PQ-loop PF04193.9 gi|282164997|ref|YP_003357382.1| - 1.5e-07 30.8 1.4 2.3e-07 30.2 0.1 1.8 1 1 0 2 2 2 1 PQ loop repeat LAB_N PF07578.6 gi|282164997|ref|YP_003357382.1| - 0.00077 19.3 0.4 0.00088 19.1 0.3 1.2 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain UPF0233 PF06781.7 gi|282164997|ref|YP_003357382.1| - 0.0085 15.7 0.2 0.012 15.2 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0233) DUF368 PF04018.8 gi|282164997|ref|YP_003357382.1| - 0.12 11.5 3.3 0.13 11.3 2.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF368) Hemerythrin PF01814.18 gi|282164998|ref|YP_003357383.1| - 1.6e-14 54.2 1.3 2.6e-14 53.5 0.3 1.8 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain DUF1342 PF07072.6 gi|282164998|ref|YP_003357383.1| - 0.06 13.0 0.1 0.095 12.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1342) DUF457 PF04307.9 gi|282164999|ref|YP_003357384.1| - 2e-16 59.6 11.9 3e-16 59.1 8.2 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Topoisom_bac PF01131.15 gi|282165000|ref|YP_003357385.1| - 5.5e-108 361.3 0.0 6.6e-108 361.1 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|282165000|ref|YP_003357385.1| - 5.5e-15 55.1 0.0 3.4e-14 52.6 0.0 2.2 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|282165000|ref|YP_003357385.1| - 1.9e-12 46.4 2.8 1.9e-12 46.4 1.9 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger LexA_DNA_bind PF01726.11 gi|282165000|ref|YP_003357385.1| - 0.097 12.2 0.0 0.55 9.8 0.0 2.3 2 0 0 2 2 2 0 LexA DNA binding domain DNA_ligase_ZBD PF03119.11 gi|282165000|ref|YP_003357385.1| - 0.26 11.0 4.8 0.11 12.2 0.6 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_ribbon_recom PF13408.1 gi|282165000|ref|YP_003357385.1| - 1.4 9.1 4.5 1.2 9.4 0.2 2.4 1 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.5 gi|282165000|ref|YP_003357385.1| - 1.8 8.5 5.4 18 5.3 0.1 2.6 2 0 0 2 2 2 0 Zinc ribbon domain Ogr_Delta PF04606.7 gi|282165000|ref|YP_003357385.1| - 2.7 7.7 6.7 0.21 11.2 0.5 2.2 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger DUF3060 PF11259.3 gi|282165001|ref|YP_003357386.1| - 0.031 13.9 0.1 0.057 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3060) RtxA PF07634.6 gi|282165001|ref|YP_003357386.1| - 0.25 11.7 2.0 6.7 7.2 0.1 2.8 2 0 0 2 2 2 0 RtxA repeat Lysis_col PF02402.11 gi|282165001|ref|YP_003357386.1| - 0.38 10.3 1.6 16 5.1 0.1 2.3 2 0 0 2 2 2 0 Lysis protein PadR PF03551.9 gi|282165002|ref|YP_003357387.1| - 9.4e-17 60.5 0.5 1.8e-16 59.6 0.1 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|282165002|ref|YP_003357387.1| - 5.6e-05 23.0 0.1 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|282165002|ref|YP_003357387.1| - 0.0004 19.9 0.0 0.0019 17.7 0.0 1.9 2 0 0 2 2 2 1 HxlR-like helix-turn-helix AphA_like PF14557.1 gi|282165002|ref|YP_003357387.1| - 0.037 13.5 0.0 0.047 13.2 0.0 1.2 1 1 0 1 1 1 0 Putative AphA-like transcriptional regulator MacB_PCD PF12704.2 gi|282165003|ref|YP_003357388.1| - 1.4e-22 80.3 0.7 1.4e-22 80.3 0.5 2.7 2 1 1 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|282165003|ref|YP_003357388.1| - 1.4e-16 60.3 17.9 1.4e-16 60.3 12.4 2.2 2 0 0 2 2 2 1 FtsX-like permease family Sigma_reg_N PF13800.1 gi|282165003|ref|YP_003357388.1| - 0.0062 16.5 4.3 0.014 15.4 0.1 2.7 2 0 0 2 2 2 1 Sigma factor regulator N-terminal DUF4234 PF14018.1 gi|282165003|ref|YP_003357388.1| - 0.28 10.9 1.4 0.69 9.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4234) Orbi_NS3 PF01616.11 gi|282165003|ref|YP_003357388.1| - 5.1 6.0 12.1 2.9 6.8 0.5 2.5 2 0 0 2 2 2 0 Orbivirus NS3 ABC_tran PF00005.22 gi|282165004|ref|YP_003357389.1| - 3.8e-35 121.1 0.0 5e-35 120.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282165004|ref|YP_003357389.1| - 8.7e-13 48.8 0.0 3.7e-06 27.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|282165004|ref|YP_003357389.1| - 2.2e-07 30.3 0.2 0.0018 17.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|282165004|ref|YP_003357389.1| - 0.00013 21.4 0.1 0.00023 20.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|282165004|ref|YP_003357389.1| - 0.00014 21.9 0.6 0.00022 21.2 0.4 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|282165004|ref|YP_003357389.1| - 0.00028 21.0 0.4 0.0057 16.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|282165004|ref|YP_003357389.1| - 0.0004 19.6 0.1 0.00058 19.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|282165004|ref|YP_003357389.1| - 0.00059 19.3 0.3 0.0092 15.4 0.2 2.0 1 1 1 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|282165004|ref|YP_003357389.1| - 0.0019 19.0 0.4 0.0033 18.2 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|282165004|ref|YP_003357389.1| - 0.0025 16.9 0.0 1.7 7.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|282165004|ref|YP_003357389.1| - 0.0032 16.9 0.1 0.05 12.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|282165004|ref|YP_003357389.1| - 0.0088 16.3 0.8 0.028 14.7 0.5 2.1 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|282165004|ref|YP_003357389.1| - 0.0096 15.8 0.8 0.031 14.2 0.6 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|282165004|ref|YP_003357389.1| - 0.014 15.7 0.1 0.024 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|282165004|ref|YP_003357389.1| - 0.018 14.9 0.1 0.19 11.6 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|282165004|ref|YP_003357389.1| - 0.027 14.3 0.2 0.049 13.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|282165004|ref|YP_003357389.1| - 0.053 13.1 0.1 0.89 9.1 0.0 2.3 1 1 1 2 2 2 0 Adenylylsulphate kinase MobB PF03205.9 gi|282165004|ref|YP_003357389.1| - 0.068 12.8 0.1 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|282165004|ref|YP_003357389.1| - 0.1 12.5 0.0 0.23 11.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.1 gi|282165004|ref|YP_003357389.1| - 0.1 12.3 0.0 0.39 10.4 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain DUF308 PF03729.8 gi|282165005|ref|YP_003357390.1| - 9.2e-26 89.6 59.1 2.7e-12 46.5 11.4 3.3 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) EcsB PF05975.7 gi|282165005|ref|YP_003357390.1| - 0.0016 17.0 15.3 0.0016 17.0 10.6 1.6 1 1 1 2 2 2 1 Bacterial ABC transporter protein EcsB KGG PF10685.4 gi|282165008|ref|YP_003357393.1| - 2.1e-08 33.8 5.0 0.083 12.8 0.5 3.3 3 0 0 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|282165008|ref|YP_003357393.1| - 4.8e-05 23.5 12.9 0.021 15.1 1.1 2.0 1 1 1 2 2 2 2 Small hydrophilic plant seed protein SASP PF00269.15 gi|282165008|ref|YP_003357393.1| - 2.1 8.2 13.3 12 5.8 0.1 3.1 2 1 1 3 3 3 0 Small, acid-soluble spore proteins, alpha/beta type SUI1 PF01253.17 gi|282165009|ref|YP_003357394.1| - 4.7e-24 84.0 1.6 5.3e-24 83.8 1.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|282165009|ref|YP_003357394.1| - 0.00077 19.6 1.9 0.0022 18.2 1.3 1.8 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DUF4322 PF14210.1 gi|282165009|ref|YP_003357394.1| - 0.019 14.4 0.0 0.053 12.9 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4322) DUF999 PF06198.6 gi|282165009|ref|YP_003357394.1| - 0.034 13.9 0.2 0.041 13.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF999) DTW PF03942.10 gi|282165009|ref|YP_003357394.1| - 0.15 11.2 1.0 0.22 10.7 0.7 1.2 1 0 0 1 1 1 0 DTW domain CxxCxxCC PF03692.10 gi|282165010|ref|YP_003357395.1| - 2e-08 34.5 5.0 3e-08 34.0 3.5 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain ThiF PF00899.16 gi|282165012|ref|YP_003357397.1| - 2.8e-10 40.1 5.6 3.7e-08 33.2 3.9 2.8 1 1 0 1 1 1 1 ThiF family Prok-JAB PF14464.1 gi|282165012|ref|YP_003357397.1| - 0.0017 17.9 0.0 0.004 16.6 0.0 1.6 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain adh_short PF00106.20 gi|282165012|ref|YP_003357397.1| - 0.0032 17.3 0.1 0.007 16.2 0.1 1.5 1 0 0 1 1 1 1 short chain dehydrogenase MoeZ_MoeB PF05237.8 gi|282165012|ref|YP_003357397.1| - 0.044 13.3 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 MoeZ/MoeB domain Semialdhyde_dh PF01118.19 gi|282165012|ref|YP_003357397.1| - 0.11 12.7 0.0 0.29 11.4 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain MFS_1 PF07690.11 gi|282165013|ref|YP_003357398.1| - 2.1e-58 197.7 68.6 5.9e-39 133.7 18.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|282165013|ref|YP_003357398.1| - 9.8e-15 53.6 31.8 1.3e-14 53.2 22.1 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|282165013|ref|YP_003357398.1| - 1.4e-07 30.4 15.9 1.4e-07 30.4 11.0 3.7 2 2 0 2 2 2 1 Sugar (and other) transporter LacY_symp PF01306.14 gi|282165013|ref|YP_003357398.1| - 9.7e-06 24.3 20.5 0.00012 20.8 4.2 2.4 2 1 0 2 2 2 2 LacY proton/sugar symporter MFS_2 PF13347.1 gi|282165013|ref|YP_003357398.1| - 2.8e-05 22.7 39.3 0.007 14.8 9.2 2.6 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|282165013|ref|YP_003357398.1| - 0.011 15.5 7.7 0.073 12.8 0.4 3.4 3 0 0 3 3 3 0 MFS_1 like family Folate_carrier PF01770.13 gi|282165013|ref|YP_003357398.1| - 0.13 10.6 3.3 0.28 9.6 2.3 1.6 1 0 0 1 1 1 0 Reduced folate carrier DUF202 PF02656.10 gi|282165015|ref|YP_003357400.1| - 3.4e-14 52.7 9.5 2.2e-13 50.1 0.9 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF202) Abhydrolase_9_N PF15420.1 gi|282165015|ref|YP_003357400.1| - 0.038 13.7 0.1 0.045 13.5 0.1 1.1 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus DUF2975 PF11188.3 gi|282165015|ref|YP_003357400.1| - 0.46 10.2 4.2 0.28 10.9 1.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) Radical_SAM PF04055.16 gi|282165016|ref|YP_003357401.1| - 2.3e-12 47.3 0.1 3.8e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SEC-C PF02810.10 gi|282165016|ref|YP_003357401.1| - 1e-10 40.8 9.3 1.9e-10 39.9 6.5 1.5 1 0 0 1 1 1 1 SEC-C motif SPASM PF13186.1 gi|282165016|ref|YP_003357401.1| - 6.3e-08 32.8 0.2 1.5e-07 31.5 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|282165016|ref|YP_003357401.1| - 1.9e-07 31.3 0.2 5e-07 29.9 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|282165016|ref|YP_003357401.1| - 0.00087 19.3 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Sulfatase PF00884.18 gi|282165017|ref|YP_003357402.1| - 6.7e-91 304.6 0.0 8.4e-91 304.3 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|282165017|ref|YP_003357402.1| - 1.2e-05 24.8 0.0 6.2e-05 22.4 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Laminin_G_3 PF13385.1 gi|282165017|ref|YP_003357402.1| - 0.00038 20.7 1.5 0.00085 19.5 0.0 2.2 3 0 0 3 3 3 1 Concanavalin A-like lectin/glucanases superfamily DUF4137 PF13593.1 gi|282165018|ref|YP_003357403.1| - 5.4e-12 45.4 14.2 7.2e-12 45.0 9.9 1.2 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) SBF PF01758.11 gi|282165018|ref|YP_003357403.1| - 9.4e-12 44.7 14.4 9.4e-12 44.7 10.0 1.8 1 1 1 2 2 2 1 Sodium Bile acid symporter family Sulfatase PF00884.18 gi|282165019|ref|YP_003357404.1| - 1.4e-60 205.1 0.0 2.5e-60 204.2 0.0 1.4 2 0 0 2 2 2 1 Sulfatase Sulfatase_C PF14707.1 gi|282165019|ref|YP_003357404.1| - 1.1e-07 32.1 0.1 2.2e-07 31.2 0.1 1.4 1 0 0 1 1 1 1 C-terminal region of aryl-sulfatase Phosphodiest PF01663.17 gi|282165019|ref|YP_003357404.1| - 3.6e-05 23.2 0.4 0.00048 19.5 0.3 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1622 PF07784.6 gi|282165020|ref|YP_003357405.1| - 1e-27 95.5 0.3 1.5e-27 95.0 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1622) EamA PF00892.15 gi|282165020|ref|YP_003357405.1| - 0.31 11.0 5.5 0.069 13.1 0.5 1.9 1 1 1 2 2 2 0 EamA-like transporter family AMP-binding PF00501.23 gi|282165023|ref|YP_003357408.1| - 3.6e-20 71.7 0.0 4.9e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme SIS_2 PF13580.1 gi|282165023|ref|YP_003357408.1| - 0.078 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 SIS domain TspO_MBR PF03073.10 gi|282165024|ref|YP_003357409.1| - 1.7e-47 160.6 23.4 2e-47 160.4 16.2 1.0 1 0 0 1 1 1 1 TspO/MBR family NfeD PF01957.13 gi|282165024|ref|YP_003357409.1| - 2.7 8.1 11.1 1 9.5 0.3 2.1 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding 60KD_IMP PF02096.15 gi|282165024|ref|YP_003357409.1| - 5.4 6.6 7.2 4.1 7.0 4.3 1.4 1 1 0 1 1 1 0 60Kd inner membrane protein Fasciclin PF02469.17 gi|282165025|ref|YP_003357410.1| - 2.5e-21 76.0 0.0 3.1e-21 75.7 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain Peptidase_MA_2 PF13485.1 gi|282165027|ref|YP_003357412.1| - 9.5e-23 80.6 0.0 1.7e-22 79.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase MA superfamily CarboxypepD_reg PF13620.1 gi|282165027|ref|YP_003357412.1| - 3.6e-08 33.3 0.3 1e-07 31.9 0.2 1.8 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain phage_tail_N PF08400.5 gi|282165027|ref|YP_003357412.1| - 4.3e-06 26.4 0.2 1.2e-05 25.0 0.1 1.8 2 0 0 2 2 2 1 Prophage tail fibre N-terminal Big_1 PF02369.11 gi|282165027|ref|YP_003357412.1| - 0.0025 17.6 0.1 0.0079 16.0 0.1 1.8 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) DUF1570 PF07607.6 gi|282165027|ref|YP_003357412.1| - 0.0041 17.1 0.1 0.049 13.6 0.0 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1570) DUF4480 PF13715.1 gi|282165027|ref|YP_003357412.1| - 0.022 14.8 0.9 0.056 13.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4480) Plasmid_Txe PF06769.8 gi|282165027|ref|YP_003357412.1| - 0.048 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Plasmid encoded toxin Txe SKG6 PF08693.5 gi|282165027|ref|YP_003357412.1| - 0.32 10.3 5.5 0.71 9.2 3.8 1.6 1 0 0 1 1 1 0 Transmembrane alpha-helix domain HSP20 PF00011.16 gi|282165028|ref|YP_003357413.1| - 1.4e-18 66.6 0.0 1.7e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|282165028|ref|YP_003357413.1| - 0.0033 17.0 0.0 0.088 12.4 0.0 2.1 2 0 0 2 2 2 1 GvpH CS PF04969.11 gi|282165028|ref|YP_003357413.1| - 0.026 15.0 0.0 0.045 14.2 0.0 1.4 1 1 0 1 1 1 0 CS domain PIH1 PF08190.7 gi|282165028|ref|YP_003357413.1| - 0.054 12.9 0.0 0.064 12.7 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 Rhodanese PF00581.15 gi|282165029|ref|YP_003357414.1| - 8.8e-16 58.2 0.0 1.1e-15 57.9 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NblA PF04485.7 gi|282165029|ref|YP_003357414.1| - 0.06 13.2 1.0 0.1 12.4 0.7 1.3 1 0 0 1 1 1 0 Phycobilisome degradation protein nblA EGL-1 PF11430.3 gi|282165029|ref|YP_003357414.1| - 0.1 12.2 0.1 0.23 11.0 0.1 1.6 1 0 0 1 1 1 0 Programmed cell death activator EGL-1 Aldedh PF00171.17 gi|282165030|ref|YP_003357415.1| - 1.5e-167 557.6 0.0 1.6e-167 557.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|282165030|ref|YP_003357415.1| - 0.0065 15.7 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1487) Peptidase_M24 PF00557.19 gi|282165033|ref|YP_003357418.1| - 1.5e-46 158.6 0.1 1.7e-46 158.4 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.19 gi|282165034|ref|YP_003357419.1| - 2.7e-42 144.7 0.3 3.4e-42 144.3 0.2 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|282165034|ref|YP_003357419.1| - 4.5e-06 27.1 0.0 7.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain AMP_N PF05195.11 gi|282165034|ref|YP_003357419.1| - 0.07 12.5 0.3 0.2 11.0 0.2 1.8 1 1 0 1 1 1 0 Aminopeptidase P, N-terminal domain HTH_5 PF01022.15 gi|282165035|ref|YP_003357420.1| - 0.00013 21.5 0.0 0.00026 20.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|282165035|ref|YP_003357420.1| - 0.0024 17.4 0.0 0.0055 16.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|282165035|ref|YP_003357420.1| - 0.071 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|282165035|ref|YP_003357420.1| - 0.077 13.1 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Radical_SAM PF04055.16 gi|282165036|ref|YP_003357421.1| - 5.1e-19 69.0 0.0 1.7e-18 67.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|282165036|ref|YP_003357421.1| - 2.9e-09 36.8 0.1 1.9e-08 34.2 0.0 2.4 3 0 0 3 3 3 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|282165036|ref|YP_003357421.1| - 0.0042 17.1 0.1 0.019 15.1 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain TPR_1 PF00515.23 gi|282165037|ref|YP_003357422.1| - 6.9e-06 25.4 9.2 0.013 15.0 0.2 4.6 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282165037|ref|YP_003357422.1| - 1.7e-05 24.2 6.5 0.047 13.4 0.1 4.1 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|282165037|ref|YP_003357422.1| - 7.2e-05 22.3 21.7 0.00064 19.3 0.6 4.9 3 2 2 5 5 4 2 TPR repeat TPR_12 PF13424.1 gi|282165037|ref|YP_003357422.1| - 0.00061 19.6 19.8 0.064 13.1 1.0 5.9 4 2 1 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282165037|ref|YP_003357422.1| - 0.00093 18.9 21.6 0.0014 18.3 0.3 5.9 6 1 1 7 7 7 2 Tetratricopeptide repeat PPR_2 PF13041.1 gi|282165037|ref|YP_003357422.1| - 0.0014 18.5 0.5 4.8 7.2 0.0 4.4 3 1 1 4 4 4 1 PPR repeat family PPR PF01535.15 gi|282165037|ref|YP_003357422.1| - 0.0014 18.4 1.8 7.9 6.7 0.1 4.5 4 0 0 4 4 4 1 PPR repeat TPR_14 PF13428.1 gi|282165037|ref|YP_003357422.1| - 0.0059 17.1 0.6 0.0059 17.1 0.4 6.9 7 1 1 8 8 6 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282165037|ref|YP_003357422.1| - 0.0083 16.7 0.1 0.0083 16.7 0.1 5.5 5 1 0 5 5 4 1 Tetratricopeptide repeat DUF3856 PF12968.2 gi|282165037|ref|YP_003357422.1| - 0.01 15.6 10.3 0.041 13.6 1.1 3.5 1 1 2 3 3 3 0 Domain of Unknown Function (DUF3856) TPR_8 PF13181.1 gi|282165037|ref|YP_003357422.1| - 0.54 10.1 15.1 1 9.2 0.3 5.6 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282165037|ref|YP_003357422.1| - 2.8 8.5 8.1 18 6.0 0.2 4.9 3 1 0 3 3 3 0 Tetratricopeptide repeat Rubrerythrin PF02915.12 gi|282165038|ref|YP_003357423.1| - 5.1e-25 88.3 16.3 1.2e-18 67.7 4.4 1.9 1 1 1 2 2 2 2 Rubrerythrin Ferritin PF00210.19 gi|282165038|ref|YP_003357423.1| - 0.00041 20.1 1.6 0.00066 19.4 1.1 1.3 1 1 0 1 1 1 1 Ferritin-like domain TF_Zn_Ribbon PF08271.7 gi|282165038|ref|YP_003357423.1| - 0.0052 16.0 4.1 0.053 12.8 3.1 2.1 1 1 1 2 2 2 1 TFIIB zinc-binding RRN7 PF11781.3 gi|282165038|ref|YP_003357423.1| - 0.048 13.1 2.5 0.42 10.1 0.2 2.4 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Rubredoxin PF00301.15 gi|282165038|ref|YP_003357423.1| - 0.57 10.0 4.5 15 5.5 3.1 2.4 1 1 0 1 1 1 0 Rubredoxin MMR_HSR1_C PF08438.5 gi|282165039|ref|YP_003357424.1| - 1.1e-34 118.9 0.0 2.4e-33 114.6 0.0 2.2 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|282165039|ref|YP_003357424.1| - 2.7e-16 59.5 0.0 6.8e-16 58.2 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|282165039|ref|YP_003357424.1| - 8.8e-10 38.2 0.0 1.8e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|282165039|ref|YP_003357424.1| - 2.8e-08 33.1 0.1 3.1e-07 29.8 0.0 2.4 3 0 0 3 3 3 1 Ferrous iron transport protein B FKBP_C PF00254.23 gi|282165040|ref|YP_003357425.1| - 2.5e-16 59.4 0.4 8.1e-16 57.8 0.3 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase NRDE PF05742.7 gi|282165040|ref|YP_003357425.1| - 0.093 12.0 0.1 0.12 11.6 0.1 1.1 1 0 0 1 1 1 0 NRDE protein Cyclase PF04199.8 gi|282165041|ref|YP_003357426.1| - 5.4e-29 101.0 0.0 7.5e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase PfkB PF00294.19 gi|282165042|ref|YP_003357427.1| - 4.1e-57 193.6 0.0 4.9e-57 193.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|282165042|ref|YP_003357427.1| - 8.2e-08 31.7 0.0 5.3e-07 29.0 0.0 2.0 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase DUF4098 PF13345.1 gi|282165045|ref|YP_003357430.1| - 1.2e-12 47.6 25.7 4.2e-07 29.8 4.6 4.1 3 1 2 5 5 5 3 Domain of unknown function (DUF4098) DUF4097 PF13349.1 gi|282165045|ref|YP_003357430.1| - 4e-10 39.4 1.2 5e-08 32.6 0.2 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4097) Bactofilin PF04519.8 gi|282165045|ref|YP_003357430.1| - 0.51 10.3 2.8 2 8.4 0.2 2.9 2 1 1 3 3 3 0 Polymer-forming cytoskeletal DUF3951 PF13131.1 gi|282165045|ref|YP_003357430.1| - 7.3 6.4 6.4 12 5.7 4.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3951) DUF3816 PF12822.2 gi|282165046|ref|YP_003357431.1| - 0.045 13.6 12.1 0.06 13.2 8.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) DUF4349 PF14257.1 gi|282165046|ref|YP_003357431.1| - 0.53 9.4 1.8 0.94 8.6 1.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Phageshock_PspG PF09583.5 gi|282165046|ref|YP_003357431.1| - 0.83 9.7 12.3 0.36 10.9 4.9 2.7 2 1 0 2 2 2 0 Phage shock protein G (Phageshock_PspG) VIT1 PF01988.14 gi|282165046|ref|YP_003357431.1| - 4.1 6.8 9.0 7.4 5.9 6.2 1.4 1 0 0 1 1 1 0 VIT family AIM24 PF01987.12 gi|282165047|ref|YP_003357432.1| - 5.4e-49 166.5 1.0 6.8e-49 166.2 0.7 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 MFS_1 PF07690.11 gi|282165049|ref|YP_003357434.1| - 3.8e-64 216.6 87.1 3.3e-55 187.2 37.0 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|282165049|ref|YP_003357434.1| - 1.5e-14 53.4 37.1 7.7e-13 47.8 11.2 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|282165049|ref|YP_003357434.1| - 2.6e-14 52.4 35.6 9.5e-12 44.0 8.7 2.4 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|282165049|ref|YP_003357434.1| - 0.0055 16.4 2.3 0.0055 16.4 1.6 3.0 3 0 0 3 3 3 1 MFS_1 like family Glyco_hydro_57 PF03065.10 gi|282165050|ref|YP_003357435.1| - 1.7e-65 221.2 0.0 5.2e-65 219.7 0.0 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|282165050|ref|YP_003357435.1| - 0.00049 19.7 0.0 0.001 18.6 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase Nif11 PF07862.6 gi|282165050|ref|YP_003357435.1| - 0.07 13.0 0.3 0.28 11.1 0.1 2.1 2 0 0 2 2 2 0 Nitrogen fixation protein of unknown function Glycos_transf_1 PF00534.15 gi|282165051|ref|YP_003357436.1| - 1.7e-32 112.2 0.0 2.8e-32 111.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282165051|ref|YP_003357436.1| - 6.1e-18 65.2 0.0 1.7e-17 63.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|282165051|ref|YP_003357436.1| - 1.7e-11 44.1 0.0 3.2e-07 30.0 0.0 2.4 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_transf_4 PF13439.1 gi|282165051|ref|YP_003357436.1| - 5.4e-11 42.5 0.0 1.1e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|282165051|ref|YP_003357436.1| - 5e-10 39.7 0.0 2.1e-09 37.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|282165051|ref|YP_003357436.1| - 0.0016 18.6 0.0 0.0033 17.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF2671 PF10877.3 gi|282165051|ref|YP_003357436.1| - 0.052 13.3 0.0 0.34 10.7 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2671) Glycos_transf_1 PF00534.15 gi|282165052|ref|YP_003357437.1| - 1.9e-37 128.3 0.0 3.1e-37 127.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282165052|ref|YP_003357437.1| - 1.8e-24 86.6 0.0 2.9e-24 86.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|282165052|ref|YP_003357437.1| - 7.4e-17 61.7 0.0 1.9e-16 60.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282165052|ref|YP_003357437.1| - 1.9e-16 60.2 0.0 1.2e-12 47.9 0.0 2.4 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|282165052|ref|YP_003357437.1| - 5.2e-09 36.2 0.0 1.2e-08 35.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|282165052|ref|YP_003357437.1| - 6.4e-06 25.8 0.0 2.6e-05 23.8 0.0 2.0 1 1 0 1 1 1 1 Starch synthase catalytic domain Glycogen_syn PF05693.8 gi|282165052|ref|YP_003357437.1| - 0.025 12.8 0.1 0.063 11.5 0.0 1.7 2 1 1 3 3 3 0 Glycogen synthase NAD_binding_10 PF13460.1 gi|282165052|ref|YP_003357437.1| - 0.033 14.2 0.0 0.098 12.6 0.0 1.9 2 0 0 2 2 2 0 NADH(P)-binding Bmp PF02608.9 gi|282165052|ref|YP_003357437.1| - 0.062 12.0 0.0 0.12 11.1 0.0 1.4 1 0 0 1 1 1 0 Basic membrane protein LpxB PF02684.10 gi|282165052|ref|YP_003357437.1| - 0.062 11.9 0.0 0.1 11.2 0.0 1.3 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase GDE_C PF06202.9 gi|282165053|ref|YP_003357438.1| - 1.4e-86 290.5 0.0 1.9e-86 290.0 0.0 1.2 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|282165053|ref|YP_003357438.1| - 1.6e-24 86.3 0.0 2.9e-24 85.5 0.0 1.4 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Glyco_hydro_100 PF12899.2 gi|282165053|ref|YP_003357438.1| - 0.00048 18.6 0.0 0.077 11.3 0.0 2.2 2 0 0 2 2 2 2 Alkaline and neutral invertase Glyco_hydro_63 PF03200.11 gi|282165053|ref|YP_003357438.1| - 0.042 11.6 0.0 0.058 11.2 0.0 1.1 1 0 0 1 1 1 0 Mannosyl oligosaccharide glucosidase TrkA_N PF02254.13 gi|282165054|ref|YP_003357439.1| - 4.3e-21 75.0 0.7 6.4e-17 61.6 0.1 3.4 3 1 0 3 3 3 2 TrkA-N domain RyR PF02026.11 gi|282165054|ref|YP_003357439.1| - 1.1e-15 57.3 0.0 1.2e-09 38.0 0.0 2.4 2 0 0 2 2 2 2 RyR domain NmrA PF05368.8 gi|282165054|ref|YP_003357439.1| - 5e-05 22.6 0.0 0.00014 21.2 0.0 1.7 2 0 0 2 2 2 1 NmrA-like family NAD_binding_7 PF13241.1 gi|282165054|ref|YP_003357439.1| - 0.00023 21.3 0.1 0.00064 19.9 0.0 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|282165054|ref|YP_003357439.1| - 0.0016 18.7 0.4 0.78 10.2 0.0 3.9 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|282165054|ref|YP_003357439.1| - 0.0078 16.0 0.3 3.5 7.4 0.1 2.6 2 1 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase Toprim_4 PF13662.1 gi|282165054|ref|YP_003357439.1| - 0.056 13.4 0.1 1.3 9.1 0.1 2.5 2 0 0 2 2 2 0 Toprim domain Toprim_3 PF13362.1 gi|282165054|ref|YP_003357439.1| - 0.12 12.6 0.4 27 5.1 0.0 2.7 2 0 0 2 2 2 0 Toprim domain TPR_12 PF13424.1 gi|282165055|ref|YP_003357440.1| - 2.2e-24 85.2 13.6 2.5e-07 30.5 0.0 6.4 3 2 3 7 7 7 6 Tetratricopeptide repeat TIR_2 PF13676.1 gi|282165055|ref|YP_003357440.1| - 1e-14 54.5 0.1 3.6e-14 52.7 0.0 2.1 2 0 0 2 2 1 1 TIR domain NACHT PF05729.7 gi|282165055|ref|YP_003357440.1| - 7e-08 32.3 0.0 2e-07 30.8 0.0 1.8 2 0 0 2 2 2 1 NACHT domain TPR_14 PF13428.1 gi|282165055|ref|YP_003357440.1| - 1.2e-06 28.6 17.6 2 9.2 0.1 8.8 8 1 1 9 9 7 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282165055|ref|YP_003357440.1| - 1.6e-06 27.4 7.8 1.7 8.5 0.0 6.2 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282165055|ref|YP_003357440.1| - 8.8e-06 25.2 12.7 2 8.5 0.0 7.7 8 0 0 8 8 8 2 Tetratricopeptide repeat AAA_16 PF13191.1 gi|282165055|ref|YP_003357440.1| - 3.9e-05 23.7 0.6 0.00012 22.1 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain TPR_10 PF13374.1 gi|282165055|ref|YP_003357440.1| - 7.7e-05 22.4 22.9 2 8.4 0.0 8.9 8 1 1 9 9 9 2 Tetratricopeptide repeat Apc5 PF12862.2 gi|282165055|ref|YP_003357440.1| - 0.00086 19.1 0.5 2.2 8.1 0.0 3.9 2 2 2 4 4 4 1 Anaphase-promoting complex subunit 5 TPR_11 PF13414.1 gi|282165055|ref|YP_003357440.1| - 0.0032 17.0 11.8 0.33 10.6 0.4 5.5 4 1 1 6 6 5 1 TPR repeat AAA_17 PF13207.1 gi|282165055|ref|YP_003357440.1| - 0.013 16.2 0.0 0.073 13.8 0.0 2.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|282165055|ref|YP_003357440.1| - 0.022 14.1 0.3 0.084 12.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain DUF1024 PF06260.7 gi|282165055|ref|YP_003357440.1| - 0.036 14.2 0.2 2.3 8.4 0.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1024) AAA_26 PF13500.1 gi|282165055|ref|YP_003357440.1| - 0.042 13.4 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain TPR_1 PF00515.23 gi|282165055|ref|YP_003357440.1| - 0.042 13.4 9.9 6.8 6.4 0.1 5.8 7 0 0 7 7 7 0 Tetratricopeptide repeat AAA_22 PF13401.1 gi|282165055|ref|YP_003357440.1| - 0.053 13.6 0.0 0.22 11.6 0.0 2.1 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|282165055|ref|YP_003357440.1| - 0.076 12.7 0.0 2.5 7.7 0.0 2.5 2 0 0 2 2 2 0 NTPase Sigma54_CBD PF04963.8 gi|282165055|ref|YP_003357440.1| - 0.09 12.2 0.5 0.51 9.7 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 factor, core binding domain TPR_4 PF07721.9 gi|282165055|ref|YP_003357440.1| - 0.33 11.4 22.8 1.3 9.6 0.1 7.1 9 0 0 9 9 6 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282165055|ref|YP_003357440.1| - 5 7.8 11.0 54 4.5 0.0 6.4 9 0 0 9 9 5 0 Tetratricopeptide repeat Peptidase_M43 PF05572.8 gi|282165056|ref|YP_003357441.1| - 3.3e-07 30.0 0.9 0.00015 21.3 0.0 2.5 2 0 0 2 2 2 2 Pregnancy-associated plasma protein-A Radical_SAM PF04055.16 gi|282165058|ref|YP_003357443.1| - 1e-21 77.8 0.0 1.7e-21 77.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|282165058|ref|YP_003357443.1| - 6e-11 42.6 0.0 1.3e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|282165058|ref|YP_003357443.1| - 9.6e-11 41.8 0.0 2.1e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|282165058|ref|YP_003357443.1| - 3.4e-10 39.9 0.0 7.2e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_C1 PF00112.18 gi|282165059|ref|YP_003357444.1| - 5.1e-15 55.9 0.0 6.4e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 Papain family cysteine protease HEAT_2 PF13646.1 gi|282165061|ref|YP_003357446.1| - 2e-24 85.6 1.4 3.9e-12 46.2 0.2 2.1 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.17 gi|282165061|ref|YP_003357446.1| - 3.5e-12 45.2 0.7 0.0034 17.3 0.0 3.6 3 0 0 3 3 3 3 HEAT repeat HEAT_EZ PF13513.1 gi|282165061|ref|YP_003357446.1| - 6.9e-11 42.3 2.1 0.0068 16.8 0.1 3.2 3 0 0 3 3 3 3 HEAT-like repeat HEAT_PBS PF03130.11 gi|282165061|ref|YP_003357446.1| - 3.1e-10 39.5 8.8 0.00026 21.1 0.7 3.7 4 0 0 4 4 4 2 PBS lyase HEAT-like repeat Arm PF00514.18 gi|282165061|ref|YP_003357446.1| - 2.7e-05 23.8 0.2 0.11 12.4 0.0 3.3 2 1 1 3 3 3 1 Armadillo/beta-catenin-like repeat DUF1641 PF07849.6 gi|282165061|ref|YP_003357446.1| - 0.092 12.3 0.2 19 4.9 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1641) DUF3545 PF12065.3 gi|282165061|ref|YP_003357446.1| - 0.13 11.9 1.7 0.3 10.8 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3545) DUF4019 PF13211.1 gi|282165063|ref|YP_003357448.1| - 0.00081 19.6 0.0 0.0017 18.5 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4019) Tad PF13400.1 gi|282165063|ref|YP_003357448.1| - 9.7 6.3 7.3 21 5.2 5.0 1.5 1 1 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like DUF553 PF04473.7 gi|282165064|ref|YP_003357449.1| - 9.3e-05 21.7 0.0 0.00014 21.1 0.0 1.4 1 1 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.14 gi|282165064|ref|YP_003357449.1| - 0.002 18.3 0.0 0.019 15.1 0.0 2.2 2 0 0 2 2 2 1 Transglutaminase-like superfamily CARDB PF07705.6 gi|282165064|ref|YP_003357449.1| - 0.083 12.9 1.0 5.4 7.1 0.0 2.8 3 1 0 3 3 3 0 CARDB Transposase_mut PF00872.13 gi|282165065|ref|YP_003357450.1| - 1.5e-106 356.1 0.0 1.8e-106 355.9 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|282165065|ref|YP_003357450.1| - 3.5e-15 55.9 0.1 1.3e-14 54.1 0.0 1.9 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|282165065|ref|YP_003357450.1| - 8.9e-07 28.3 0.1 3.4e-06 26.4 0.0 1.9 2 1 0 2 2 2 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.1 gi|282165065|ref|YP_003357450.1| - 3.5e-06 27.0 0.0 0.011 15.7 0.0 2.7 2 0 0 2 2 2 2 DDE domain DDE_Tnp_ISL3 PF01610.12 gi|282165065|ref|YP_003357450.1| - 0.00022 20.9 0.1 0.00059 19.5 0.0 1.8 1 1 0 1 1 1 1 Transposase HTH_29 PF13551.1 gi|282165065|ref|YP_003357450.1| - 0.057 13.5 0.2 0.21 11.7 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix DHHA1 PF02272.14 gi|282165066|ref|YP_003357451.1| - 5.2e-12 45.2 0.1 1.3e-11 43.9 0.0 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|282165066|ref|YP_003357451.1| - 4.4e-05 23.1 4.3 0.00014 21.5 0.6 2.8 2 1 0 2 2 2 1 DHH family FeThRed_B PF02943.10 gi|282165067|ref|YP_003357452.1| - 3.1e-24 84.7 0.1 4.1e-24 84.3 0.1 1.2 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Rubredoxin PF00301.15 gi|282165067|ref|YP_003357452.1| - 0.013 15.3 7.2 1.8 8.5 5.0 2.9 1 1 0 1 1 1 0 Rubredoxin RecR PF02132.10 gi|282165067|ref|YP_003357452.1| - 0.048 13.0 2.1 0.12 11.8 1.5 1.6 1 0 0 1 1 1 0 RecR protein Glutaredoxin PF00462.19 gi|282165068|ref|YP_003357453.1| - 2.3e-11 43.4 0.1 3.5e-11 42.9 0.1 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|282165068|ref|YP_003357453.1| - 0.00044 20.4 0.0 0.00053 20.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|282165068|ref|YP_003357453.1| - 0.021 14.7 0.0 0.024 14.6 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain BBS2_Mid PF14783.1 gi|282165068|ref|YP_003357453.1| - 0.064 13.0 0.1 0.91 9.3 0.0 2.0 1 1 1 2 2 2 0 Ciliary BBSome complex subunit 2, middle region YIEGIA PF14045.1 gi|282165068|ref|YP_003357453.1| - 0.1 11.2 0.0 0.11 11.0 0.0 1.0 1 0 0 1 1 1 0 YIEGIA protein Proteasome PF00227.21 gi|282165069|ref|YP_003357454.1| - 2.6e-51 173.6 0.0 2.9e-51 173.4 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.3 gi|282165070|ref|YP_003357455.1| - 2.1e-34 118.1 0.0 4.4e-34 117.1 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|282165070|ref|YP_003357455.1| - 3.7e-22 78.9 0.0 9.2e-22 77.6 0.0 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|282165070|ref|YP_003357455.1| - 5.1e-15 55.0 0.1 1.5e-14 53.5 0.0 1.9 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|282165070|ref|YP_003357455.1| - 1e-11 44.7 0.0 2.9e-11 43.2 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|282165070|ref|YP_003357455.1| - 4.1e-06 26.6 0.0 1.2e-05 25.0 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|282165070|ref|YP_003357455.1| - 4.5e-05 22.9 0.8 0.00068 19.1 0.1 3.1 3 1 0 3 3 3 1 KH domain KH_4 PF13083.1 gi|282165070|ref|YP_003357455.1| - 0.0012 18.4 0.1 0.003 17.1 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|282165070|ref|YP_003357455.1| - 0.0016 18.0 0.3 0.0061 16.1 0.5 1.9 2 0 0 2 2 2 1 KH domain Peripla_BP_4 PF13407.1 gi|282165070|ref|YP_003357455.1| - 0.053 12.8 0.0 0.2 11.0 0.0 1.8 2 0 0 2 2 2 0 Periplasmic binding protein domain KH_3 PF13014.1 gi|282165070|ref|YP_003357455.1| - 0.068 12.8 0.0 0.23 11.1 0.0 1.9 1 0 0 1 1 1 0 KH domain CarboxypepD_reg PF13620.1 gi|282165071|ref|YP_003357456.1| - 1.6e-08 34.4 3.2 2.9e-08 33.6 2.2 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282165071|ref|YP_003357456.1| - 0.00034 20.5 0.1 0.0005 20.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) phage_tail_N PF08400.5 gi|282165071|ref|YP_003357456.1| - 0.0068 16.1 0.4 0.0096 15.6 0.3 1.2 1 0 0 1 1 1 1 Prophage tail fibre N-terminal Cna_B PF05738.8 gi|282165071|ref|YP_003357456.1| - 0.055 13.2 0.3 0.098 12.4 0.2 1.5 1 0 0 1 1 1 0 Cna protein B-type domain PLRV_ORF5 PF01690.12 gi|282165071|ref|YP_003357456.1| - 0.43 9.6 31.5 0.98 8.4 10.8 2.1 2 0 0 2 2 2 0 Potato leaf roll virus readthrough protein Trypan_PARP PF05887.6 gi|282165071|ref|YP_003357456.1| - 2 8.2 9.9 12 5.6 6.9 2.0 1 1 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Pyridox_ox_2 PF12900.2 gi|282165072|ref|YP_003357457.1| - 1.2e-28 99.7 0.0 1.3e-28 99.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|282165072|ref|YP_003357457.1| - 4.5e-07 29.7 0.0 5.9e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF3821 PF12863.2 gi|282165072|ref|YP_003357457.1| - 0.054 13.1 0.0 0.091 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3821) PNP_UDP_1 PF01048.15 gi|282165073|ref|YP_003357458.1| - 1.8e-48 164.5 0.6 2e-48 164.3 0.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DHODB_Fe-S_bind PF10418.4 gi|282165073|ref|YP_003357458.1| - 0.013 14.9 0.2 1.5 8.3 0.0 2.7 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Methyltransf_11 PF08241.7 gi|282165074|ref|YP_003357459.1| - 5e-24 84.6 0.0 9.5e-24 83.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282165074|ref|YP_003357459.1| - 3.5e-20 72.1 0.0 4.8e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282165074|ref|YP_003357459.1| - 1.1e-16 60.6 0.1 1.7e-16 60.0 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|282165074|ref|YP_003357459.1| - 9.1e-16 58.4 0.0 1.5e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282165074|ref|YP_003357459.1| - 6e-14 52.3 0.0 1.1e-13 51.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282165074|ref|YP_003357459.1| - 3.5e-12 46.3 0.0 5.7e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282165074|ref|YP_003357459.1| - 2.9e-11 43.6 0.0 6e-11 42.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282165074|ref|YP_003357459.1| - 1.2e-10 41.4 0.0 2.1e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|282165074|ref|YP_003357459.1| - 4.2e-08 32.6 0.0 7.6e-08 31.7 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|282165074|ref|YP_003357459.1| - 8.8e-07 28.5 0.0 1.3e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.14 gi|282165074|ref|YP_003357459.1| - 2.3e-06 27.2 0.0 3.1e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.13 gi|282165074|ref|YP_003357459.1| - 2.6e-06 27.1 0.0 4.3e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|282165074|ref|YP_003357459.1| - 5.3e-06 25.9 0.0 8.5e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|282165074|ref|YP_003357459.1| - 5.3e-05 22.9 0.9 0.00014 21.5 0.6 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_15 PF09445.5 gi|282165074|ref|YP_003357459.1| - 6.2e-05 22.6 0.0 8.8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MetW PF07021.7 gi|282165074|ref|YP_003357459.1| - 0.00026 20.4 0.0 0.00042 19.7 0.0 1.3 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_24 PF13578.1 gi|282165074|ref|YP_003357459.1| - 0.00076 20.2 0.0 0.0016 19.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|282165074|ref|YP_003357459.1| - 0.00092 18.4 0.0 0.0026 16.9 0.0 1.6 1 1 1 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|282165074|ref|YP_003357459.1| - 0.0011 18.6 0.0 0.0023 17.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|282165074|ref|YP_003357459.1| - 0.0017 17.8 0.0 0.016 14.6 0.0 2.1 2 0 0 2 2 2 1 DNA methylase TehB PF03848.9 gi|282165074|ref|YP_003357459.1| - 0.0022 17.2 0.0 0.0032 16.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB SAM_MT PF04445.8 gi|282165074|ref|YP_003357459.1| - 0.0034 16.5 0.0 0.0049 16.0 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase RrnaAD PF00398.15 gi|282165074|ref|YP_003357459.1| - 0.035 13.1 0.0 0.05 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TPMT PF05724.6 gi|282165074|ref|YP_003357459.1| - 0.043 13.2 0.0 0.063 12.7 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) FtsJ PF01728.14 gi|282165074|ref|YP_003357459.1| - 0.059 13.3 0.3 0.1 12.5 0.2 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase DOT1 PF08123.8 gi|282165074|ref|YP_003357459.1| - 0.078 12.2 0.1 0.15 11.3 0.1 1.4 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_9 PF08003.6 gi|282165074|ref|YP_003357459.1| - 0.14 10.7 0.0 0.23 10.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Pro_CA PF00484.14 gi|282165075|ref|YP_003357460.1| - 5.6e-28 97.8 0.0 1e-27 97.0 0.0 1.4 1 0 0 1 1 1 1 Carbonic anhydrase FrhB_FdhB_C PF04432.8 gi|282165076|ref|YP_003357461.1| - 1.7e-33 115.3 0.3 1.7e-33 115.3 0.2 1.9 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|282165076|ref|YP_003357461.1| - 1.3e-23 82.6 0.0 2.7e-23 81.6 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|282165076|ref|YP_003357461.1| - 1.3e-11 44.3 8.0 1.3e-11 44.2 3.7 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282165076|ref|YP_003357461.1| - 1.1e-09 38.5 4.9 4.2e-05 23.8 0.2 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282165076|ref|YP_003357461.1| - 3.5e-07 30.4 7.5 0.003 17.8 0.3 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282165076|ref|YP_003357461.1| - 2.3e-06 26.9 16.0 0.00055 19.4 3.6 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282165076|ref|YP_003357461.1| - 6.2e-06 25.9 25.3 8.1e-05 22.3 9.2 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282165076|ref|YP_003357461.1| - 9.3e-05 22.6 18.7 0.0008 19.6 9.6 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282165076|ref|YP_003357461.1| - 0.00011 22.4 11.4 0.00011 22.4 7.9 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282165076|ref|YP_003357461.1| - 0.0002 21.0 18.4 0.011 15.6 2.4 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|282165076|ref|YP_003357461.1| - 0.0012 19.0 18.7 0.0031 17.7 2.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|282165076|ref|YP_003357461.1| - 0.0043 16.8 13.7 0.016 15.0 0.8 3.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|282165076|ref|YP_003357461.1| - 0.0072 16.6 14.3 0.02 15.2 0.5 3.2 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|282165076|ref|YP_003357461.1| - 0.058 13.9 8.9 0.47 11.0 0.1 3.0 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|282165076|ref|YP_003357461.1| - 0.14 12.0 16.9 1.7 8.5 10.3 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain AFOR_C PF01314.13 gi|282165076|ref|YP_003357461.1| - 0.18 10.4 4.0 0.098 11.3 0.4 2.0 2 1 0 2 2 2 0 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Fer4_16 PF13484.1 gi|282165076|ref|YP_003357461.1| - 0.19 12.5 17.6 6.9 7.5 9.8 3.4 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|282165076|ref|YP_003357461.1| - 0.74 10.5 23.9 0.08 13.5 3.1 3.5 4 0 0 4 4 2 0 4Fe-4S binding domain Molybdopterin PF00384.17 gi|282165077|ref|YP_003357462.1| - 3.8e-101 338.9 0.0 4.5e-101 338.6 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|282165077|ref|YP_003357462.1| - 1.4e-34 118.2 0.0 2.4e-34 117.4 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|282165077|ref|YP_003357462.1| - 9.6e-22 76.5 0.7 9.6e-22 76.5 0.5 2.0 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Form_Nir_trans PF01226.12 gi|282165078|ref|YP_003357463.1| - 4.7e-87 291.0 29.5 5.5e-87 290.8 20.5 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter NiFeSe_Hases PF00374.14 gi|282165079|ref|YP_003357464.1| - 7e-40 137.2 3.3 2.5e-18 66.1 0.5 4.0 1 1 1 3 3 3 3 Nickel-dependent hydrogenase Ribonucleas_3_2 PF11469.3 gi|282165079|ref|YP_003357464.1| - 0.098 12.8 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease III HycI PF01750.13 gi|282165080|ref|YP_003357465.1| - 1e-32 112.4 0.0 1.2e-32 112.1 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Oxidored_q6 PF01058.17 gi|282165081|ref|YP_003357466.1| - 1e-28 99.5 0.2 1e-28 99.5 0.1 2.0 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|282165081|ref|YP_003357466.1| - 2.6e-11 42.6 17.1 3.8e-07 29.4 1.4 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282165081|ref|YP_003357466.1| - 1.9e-09 37.1 9.7 1.9e-09 37.1 6.7 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282165081|ref|YP_003357466.1| - 7.3e-08 32.6 14.4 7e-07 29.5 9.0 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282165081|ref|YP_003357466.1| - 9.2e-08 31.5 18.4 0.0018 18.0 1.7 3.9 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|282165081|ref|YP_003357466.1| - 1.2e-06 28.7 11.7 1.2e-06 28.7 8.1 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282165081|ref|YP_003357466.1| - 1.5e-06 27.7 18.6 0.00056 19.6 1.5 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282165081|ref|YP_003357466.1| - 4e-06 26.5 13.0 0.0074 16.1 2.8 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282165081|ref|YP_003357466.1| - 0.0003 21.4 15.2 0.0026 18.4 0.6 3.0 4 0 0 4 4 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|282165081|ref|YP_003357466.1| - 0.00044 20.5 10.3 0.021 15.1 0.7 3.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|282165081|ref|YP_003357466.1| - 0.00081 19.5 19.9 0.012 15.8 2.4 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|282165081|ref|YP_003357466.1| - 0.0024 18.3 11.4 0.14 12.7 0.9 3.0 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|282165081|ref|YP_003357466.1| - 0.0086 16.0 15.4 0.0086 16.0 10.7 3.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282165081|ref|YP_003357466.1| - 0.071 13.4 19.9 0.11 12.8 1.8 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282165081|ref|YP_003357466.1| - 0.35 11.3 22.3 0.63 10.5 4.7 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|282165081|ref|YP_003357466.1| - 7.4 7.3 31.3 0.34 11.5 2.8 4.0 4 0 0 4 4 3 0 4Fe-4S binding domain FrhB_FdhB_C PF04432.8 gi|282165082|ref|YP_003357467.1| - 9.5e-45 151.8 0.1 1.3e-44 151.4 0.1 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|282165082|ref|YP_003357467.1| - 2e-29 101.2 0.6 4.5e-29 100.1 0.4 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Nitro_FeMo-Co PF02579.12 gi|282165083|ref|YP_003357468.1| - 5.6e-18 64.8 0.0 6.5e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.12 gi|282165084|ref|YP_003357469.1| - 4.7e-11 42.6 0.1 5.5e-11 42.3 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor UDPG_MGDP_dh_N PF03721.9 gi|282165086|ref|YP_003357471.1| - 8.5e-69 230.6 0.2 2.5e-68 229.1 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|282165086|ref|YP_003357471.1| - 4e-34 116.7 0.0 8.1e-34 115.7 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|282165086|ref|YP_003357471.1| - 1.8e-30 105.1 0.1 9.9e-30 102.8 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|282165086|ref|YP_003357471.1| - 2.4e-06 27.3 0.0 1.3e-05 24.9 0.0 2.3 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|282165086|ref|YP_003357471.1| - 3e-05 24.3 0.0 0.052 13.9 0.0 3.6 3 2 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|282165086|ref|YP_003357471.1| - 0.00024 20.5 0.0 0.00089 18.7 0.0 1.9 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|282165086|ref|YP_003357471.1| - 0.0005 19.2 0.2 0.21 10.7 0.0 2.9 2 1 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|282165086|ref|YP_003357471.1| - 0.00067 19.3 0.0 0.0032 17.1 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|282165086|ref|YP_003357471.1| - 0.00071 20.0 0.1 0.032 14.7 0.0 2.5 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Pyr_redox PF00070.22 gi|282165086|ref|YP_003357471.1| - 0.0089 16.4 0.1 0.051 13.9 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|282165086|ref|YP_003357471.1| - 0.027 14.2 0.1 0.85 9.4 0.0 2.5 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF1382 PF07131.6 gi|282165086|ref|YP_003357471.1| - 0.14 12.2 0.0 0.33 11.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1382) DUF488 PF04343.8 gi|282165087|ref|YP_003357472.1| - 2.5e-34 118.2 0.0 3.2e-34 117.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 HhH-GPD PF00730.20 gi|282165088|ref|YP_003357473.1| - 1.9e-16 60.3 0.0 3.2e-16 59.5 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein AlkA_N PF06029.6 gi|282165088|ref|YP_003357473.1| - 0.0076 16.2 0.0 0.036 14.1 0.0 2.1 3 0 0 3 3 3 1 AlkA N-terminal domain LysE PF01810.13 gi|282165089|ref|YP_003357474.1| - 9e-33 113.1 14.3 1e-32 112.9 9.9 1.0 1 0 0 1 1 1 1 LysE type translocator DUF4181 PF13789.1 gi|282165089|ref|YP_003357474.1| - 0.084 12.7 3.8 2.1 8.3 1.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4181) DUF1700 PF08006.6 gi|282165089|ref|YP_003357474.1| - 6.7 5.9 13.7 0.25 10.6 3.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1700) Pribosyltran_N PF13793.1 gi|282165090|ref|YP_003357475.1| - 8e-26 90.0 0.0 1.5e-24 85.9 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|282165090|ref|YP_003357475.1| - 1.1e-13 51.0 0.8 6.6e-13 48.4 0.2 2.3 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|282165090|ref|YP_003357475.1| - 7.4e-09 35.6 3.0 1.2e-08 34.9 2.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|282165090|ref|YP_003357475.1| - 5.6e-06 25.7 0.1 8.9e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|282165090|ref|YP_003357475.1| - 0.0061 15.8 0.1 0.012 14.8 0.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase P5CR_dimer PF14748.1 gi|282165090|ref|YP_003357475.1| - 0.037 14.0 0.0 0.082 12.9 0.0 1.6 1 1 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation MoaE PF02391.12 gi|282165091|ref|YP_003357476.1| - 2.3e-24 85.4 2.8 2.8e-24 85.1 0.2 2.3 3 0 0 3 3 3 1 MoaE protein MobB PF03205.9 gi|282165091|ref|YP_003357476.1| - 1.7e-19 69.9 1.6 3.8e-19 68.7 1.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|282165091|ref|YP_003357476.1| - 0.00038 20.5 1.2 0.07 13.1 0.2 2.4 1 1 0 2 2 2 2 AAA ATPase domain Dynamin_N PF00350.18 gi|282165091|ref|YP_003357476.1| - 0.0045 16.8 0.1 0.23 11.2 0.0 2.2 2 0 0 2 2 2 1 Dynamin family MMR_HSR1 PF01926.18 gi|282165091|ref|YP_003357476.1| - 0.0098 15.8 0.0 0.022 14.7 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|282165091|ref|YP_003357476.1| - 0.012 15.9 2.1 0.18 12.1 0.1 2.4 1 1 1 2 2 2 0 AAA domain Miro PF08477.8 gi|282165091|ref|YP_003357476.1| - 0.013 16.0 0.1 0.03 14.8 0.1 1.7 1 0 0 1 1 1 0 Miro-like protein AAA_14 PF13173.1 gi|282165091|ref|YP_003357476.1| - 0.017 15.0 0.0 0.05 13.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|282165091|ref|YP_003357476.1| - 0.028 13.8 0.3 0.05 13.0 0.1 1.6 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_25 PF13481.1 gi|282165091|ref|YP_003357476.1| - 0.041 13.2 0.6 0.13 11.6 0.0 2.1 2 1 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|282165091|ref|YP_003357476.1| - 0.062 12.7 0.2 0.2 11.1 0.1 2.0 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.1 gi|282165091|ref|YP_003357476.1| - 0.087 12.7 0.7 0.48 10.3 0.1 2.2 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|282165091|ref|YP_003357476.1| - 0.089 13.0 0.1 0.18 12.0 0.1 1.6 1 1 0 1 1 1 0 ABC transporter DUF4320 PF14208.1 gi|282165091|ref|YP_003357476.1| - 0.1 12.5 0.2 0.57 10.1 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4320) AAA_17 PF13207.1 gi|282165091|ref|YP_003357476.1| - 0.12 13.1 2.2 0.37 11.6 0.2 2.3 1 1 1 2 2 2 0 AAA domain PGM_PMM_I PF02878.11 gi|282165092|ref|YP_003357477.1| - 1.2e-40 138.1 0.1 3.7e-40 136.6 0.1 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|282165092|ref|YP_003357477.1| - 1.4e-27 96.0 0.0 2.5e-27 95.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|282165092|ref|YP_003357477.1| - 4.8e-25 87.8 0.1 1.2e-24 86.5 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|282165092|ref|YP_003357477.1| - 8.4e-12 44.9 0.0 2.7e-11 43.2 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain eIF-1a PF01176.14 gi|282165093|ref|YP_003357478.1| - 6.5e-26 89.5 2.7 8.8e-26 89.1 1.9 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Methyltransf_14 PF08484.6 gi|282165093|ref|YP_003357478.1| - 0.15 11.6 0.1 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain tRNA-synt_1b PF00579.20 gi|282165094|ref|YP_003357479.1| - 3.7e-55 187.1 0.0 4.5e-55 186.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|282165094|ref|YP_003357479.1| - 0.00018 20.3 0.0 0.17 10.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) BLOC1_2 PF10046.4 gi|282165095|ref|YP_003357480.1| - 0.0046 17.0 1.3 0.0097 16.0 0.6 1.7 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 NVEALA PF14055.1 gi|282165095|ref|YP_003357480.1| - 0.0065 16.1 0.1 0.018 14.7 0.1 1.7 1 0 0 1 1 1 1 NVEALA protein Wzz PF02706.10 gi|282165095|ref|YP_003357480.1| - 0.55 10.0 4.0 1.3 8.8 2.7 1.7 1 1 0 1 1 1 0 Chain length determinant protein HALZ PF02183.13 gi|282165096|ref|YP_003357481.1| - 0.00066 19.3 0.4 0.019 14.6 0.1 2.2 1 1 1 2 2 2 2 Homeobox associated leucine zipper DUF3450 PF11932.3 gi|282165096|ref|YP_003357481.1| - 0.014 14.6 0.0 0.027 13.7 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4446 PF14584.1 gi|282165096|ref|YP_003357481.1| - 0.021 14.6 0.1 0.033 14.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) GOLGA2L5 PF15070.1 gi|282165096|ref|YP_003357481.1| - 0.033 12.6 0.0 0.046 12.2 0.0 1.1 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 GAS PF13851.1 gi|282165096|ref|YP_003357481.1| - 0.037 13.2 0.1 0.053 12.7 0.0 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF1510 PF07423.6 gi|282165096|ref|YP_003357481.1| - 0.07 12.4 0.0 0.097 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) DivIC PF04977.10 gi|282165096|ref|YP_003357481.1| - 0.073 12.5 0.2 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 Septum formation initiator Mod_r PF07200.8 gi|282165096|ref|YP_003357481.1| - 0.11 12.4 0.1 0.16 11.8 0.1 1.2 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Phage_GP20 PF06810.6 gi|282165096|ref|YP_003357481.1| - 0.23 10.9 2.0 0.63 9.4 1.0 1.8 1 1 1 2 2 2 0 Phage minor structural protein GP20 YkyA PF10368.4 gi|282165096|ref|YP_003357481.1| - 0.32 10.3 2.8 0.46 9.8 2.0 1.1 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein FliD_N PF02465.13 gi|282165096|ref|YP_003357481.1| - 1.1 9.7 5.6 1.3 9.4 2.9 1.8 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus IncA PF04156.9 gi|282165096|ref|YP_003357481.1| - 5.2 6.6 5.8 7.8 6.0 0.0 1.9 1 1 0 1 1 1 0 IncA protein GDPD PF03009.12 gi|282165097|ref|YP_003357482.1| - 3.9e-34 118.2 0.0 1.6e-33 116.3 0.0 1.8 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Lyase_1 PF00206.15 gi|282165098|ref|YP_003357483.1| - 4.6e-55 186.9 1.0 7.5e-55 186.3 0.7 1.3 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|282165098|ref|YP_003357483.1| - 4.3e-28 97.1 0.5 2.3e-27 94.8 0.1 2.3 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus DUF1579 PF07617.6 gi|282165098|ref|YP_003357483.1| - 0.045 13.3 0.1 0.088 12.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1579) Glycos_transf_2 PF00535.21 gi|282165099|ref|YP_003357484.1| - 4.5e-15 55.7 0.0 6.2e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 UbiA PF01040.13 gi|282165100|ref|YP_003357485.1| - 1.4e-35 122.7 27.2 1.8e-35 122.4 18.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family US22 PF02393.11 gi|282165100|ref|YP_003357485.1| - 0.078 13.0 0.3 0.15 12.0 0.2 1.4 1 0 0 1 1 1 0 US22 like Colicin_im PF03857.8 gi|282165100|ref|YP_003357485.1| - 0.1 12.3 2.1 0.23 11.2 1.5 1.5 1 0 0 1 1 1 0 Colicin immunity protein NUMOD1 PF07453.8 gi|282165101|ref|YP_003357486.1| - 5.3 7.0 10.2 19 5.2 0.0 5.2 5 1 0 5 5 5 0 NUMOD1 domain DUF1743 PF08489.6 gi|282165102|ref|YP_003357487.1| - 1e-07 31.7 0.2 1.4e-05 24.8 0.0 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF1743) TrmB PF01978.14 gi|282165102|ref|YP_003357487.1| - 0.00051 19.6 0.0 0.0019 17.8 0.0 2.0 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|282165102|ref|YP_003357487.1| - 0.0062 16.5 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|282165102|ref|YP_003357487.1| - 0.013 15.6 0.0 0.04 14.0 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix HTH_23 PF13384.1 gi|282165102|ref|YP_003357487.1| - 0.031 13.9 0.0 0.079 12.6 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain 7kD_DNA_binding PF02294.13 gi|282165102|ref|YP_003357487.1| - 0.048 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 7kD DNA-binding domain HTH_26 PF13443.1 gi|282165102|ref|YP_003357487.1| - 0.079 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_43 PF09904.4 gi|282165102|ref|YP_003357487.1| - 0.1 12.4 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Aminotran_5 PF00266.14 gi|282165103|ref|YP_003357488.1| - 2.5e-120 401.6 0.0 2.9e-120 401.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|282165103|ref|YP_003357488.1| - 1.4e-14 53.9 0.0 2.1e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|282165103|ref|YP_003357488.1| - 1e-06 27.3 0.0 2e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|282165103|ref|YP_003357488.1| - 5.8e-05 22.3 0.0 8.1e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|282165103|ref|YP_003357488.1| - 0.0017 16.8 0.0 0.003 16.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain SLA_LP_auto_ag PF05889.8 gi|282165103|ref|YP_003357488.1| - 0.044 12.2 0.0 0.068 11.6 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Glyoxalase PF00903.20 gi|282165103|ref|YP_003357488.1| - 0.12 12.3 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ThiS PF02597.15 gi|282165104|ref|YP_003357489.1| - 0.00036 20.8 0.0 0.00046 20.5 0.0 1.2 1 0 0 1 1 1 1 ThiS family Methyltransf_31 PF13847.1 gi|282165106|ref|YP_003357491.1| - 3.8e-15 55.7 0.0 6.6e-15 55.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282165106|ref|YP_003357491.1| - 4.2e-13 49.5 0.0 1.1e-12 48.1 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282165106|ref|YP_003357491.1| - 8e-13 48.9 0.0 1.9e-12 47.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282165106|ref|YP_003357491.1| - 1.7e-10 40.8 0.1 9e-10 38.4 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282165106|ref|YP_003357491.1| - 1.9e-10 41.0 0.0 3.2e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282165106|ref|YP_003357491.1| - 1.6e-08 34.8 0.0 4.3e-08 33.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282165106|ref|YP_003357491.1| - 5.5e-08 32.8 0.0 1.2e-07 31.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282165106|ref|YP_003357491.1| - 5.2e-07 29.0 0.2 3.9e-05 22.8 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|282165106|ref|YP_003357491.1| - 4.3e-05 22.9 0.0 6e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|282165106|ref|YP_003357491.1| - 5.5e-05 22.4 0.1 8.9e-05 21.7 0.1 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.6 gi|282165106|ref|YP_003357491.1| - 0.0003 20.2 0.0 0.00044 19.7 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.6 gi|282165106|ref|YP_003357491.1| - 0.00052 19.4 0.0 0.00076 18.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.15 gi|282165106|ref|YP_003357491.1| - 0.00088 18.4 0.0 0.0012 17.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|282165106|ref|YP_003357491.1| - 0.0012 18.4 0.5 0.0046 16.5 0.3 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|282165106|ref|YP_003357491.1| - 0.0014 18.2 0.1 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|282165106|ref|YP_003357491.1| - 0.0023 17.5 0.0 0.0043 16.6 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.6 gi|282165106|ref|YP_003357491.1| - 0.0084 14.8 0.0 0.02 13.5 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) FmrO PF07091.6 gi|282165106|ref|YP_003357491.1| - 0.01 14.8 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) N6_N4_Mtase PF01555.13 gi|282165106|ref|YP_003357491.1| - 0.035 13.6 0.1 0.087 12.3 0.0 1.6 2 0 0 2 2 2 0 DNA methylase PTS_IIB PF02302.12 gi|282165106|ref|YP_003357491.1| - 0.059 13.8 0.0 18 5.9 0.0 2.4 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit polyprenyl_synt PF00348.12 gi|282165107|ref|YP_003357492.1| - 3.3e-53 180.1 2.7 4.7e-53 179.6 1.9 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Asn_synthase PF00733.16 gi|282165108|ref|YP_003357493.1| - 1.2e-48 165.8 2.2 1.8e-48 165.2 1.6 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|282165108|ref|YP_003357493.1| - 3.6e-22 78.4 0.0 3e-21 75.4 0.0 2.4 2 1 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|282165108|ref|YP_003357493.1| - 3.2e-18 65.9 0.0 8.3e-18 64.6 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|282165108|ref|YP_003357493.1| - 0.0021 16.8 0.1 0.078 11.6 0.0 2.4 2 1 0 3 3 3 1 Glutamine amidotransferases class-II tRNA-synt_2d PF01409.15 gi|282165108|ref|YP_003357493.1| - 0.16 11.1 0.0 0.27 10.3 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) Glu-tRNAGln PF02686.10 gi|282165109|ref|YP_003357494.1| - 2.7e-26 91.1 0.0 3.3e-26 90.8 0.0 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.16 gi|282165110|ref|YP_003357495.1| - 3.3e-152 507.3 0.0 3.8e-152 507.1 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.10 gi|282165111|ref|YP_003357496.1| - 2.3e-111 371.2 0.0 3.3e-111 370.7 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|282165111|ref|YP_003357496.1| - 1.3e-37 128.8 0.1 1.9e-37 128.2 0.0 1.3 1 0 0 1 1 1 1 GatB domain Topoisom_bac PF01131.15 gi|282165112|ref|YP_003357497.1| - 4.2e-111 371.6 0.0 6.5e-111 370.9 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|282165112|ref|YP_003357497.1| - 1.2e-16 60.4 0.2 3.9e-16 58.8 0.1 1.9 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|282165112|ref|YP_003357497.1| - 5e-14 51.5 8.6 6.1e-14 51.2 2.5 2.4 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Tmemb_55A PF09788.4 gi|282165113|ref|YP_003357498.1| - 0.06 12.4 0.2 0.06 12.4 0.1 1.7 2 0 0 2 2 2 0 Transmembrane protein 55A PTS_2-RNA PF01885.11 gi|282165114|ref|YP_003357499.1| - 1.5e-41 141.7 0.0 1.9e-41 141.4 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family UPF0158 PF03682.8 gi|282165114|ref|YP_003357499.1| - 0.12 11.9 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0158) RTC PF01137.16 gi|282165115|ref|YP_003357500.1| - 3.5e-78 261.5 0.1 4e-78 261.3 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|282165115|ref|YP_003357500.1| - 5.6e-17 61.6 0.2 1.1e-16 60.6 0.2 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain PEGA PF08308.6 gi|282165116|ref|YP_003357501.1| - 2.3e-25 88.1 3.8 8.4e-15 54.3 0.0 3.4 2 1 1 3 3 3 2 PEGA domain CarboxypepD_reg PF13620.1 gi|282165116|ref|YP_003357501.1| - 8.7e-22 76.9 14.5 2.9e-06 27.2 0.2 5.4 5 0 0 5 5 5 4 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282165116|ref|YP_003357501.1| - 2.3e-09 37.1 4.3 0.024 14.6 0.1 4.8 5 0 0 5 5 5 3 Domain of unknown function (DUF4480) Dioxygenase_C PF00775.16 gi|282165116|ref|YP_003357501.1| - 0.0019 17.4 0.1 0.68 9.1 0.0 3.1 2 1 0 2 2 2 2 Dioxygenase DUF1416 PF07210.7 gi|282165116|ref|YP_003357501.1| - 0.0058 16.2 1.2 0.2 11.2 0.0 3.2 2 1 2 4 4 4 1 Protein of unknown function (DUF1416) Cna_B PF05738.8 gi|282165116|ref|YP_003357501.1| - 0.011 15.4 4.9 1.5 8.6 0.1 3.9 4 1 0 4 4 4 0 Cna protein B-type domain Minor_capsid_3 PF12691.2 gi|282165116|ref|YP_003357501.1| - 0.029 14.0 0.0 0.092 12.4 0.0 1.8 2 0 0 2 2 2 0 Minor capsid protein from bacteriophage Big_1 PF02369.11 gi|282165117|ref|YP_003357502.1| - 3.8e-08 33.1 4.6 0.00081 19.2 0.7 4.0 3 1 1 4 4 4 2 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|282165117|ref|YP_003357502.1| - 0.00051 20.0 17.1 0.024 14.6 3.1 4.3 4 1 0 4 4 4 2 Carboxypeptidase regulatory-like domain DUF4017 PF13209.1 gi|282165117|ref|YP_003357502.1| - 0.041 13.6 0.3 0.12 12.1 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF4017) PhosphMutase PF10143.4 gi|282165118|ref|YP_003357503.1| - 3.5e-50 170.0 0.0 5.2e-50 169.4 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|282165118|ref|YP_003357503.1| - 6e-39 133.9 0.0 7.4e-39 133.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily GHMP_kinases_N PF00288.21 gi|282165119|ref|YP_003357504.1| - 1.5e-11 44.1 2.0 1.5e-11 44.1 1.4 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|282165119|ref|YP_003357504.1| - 7.2e-09 35.7 0.0 2e-08 34.3 0.0 1.7 1 1 0 1 1 1 1 GHMP kinases C terminal CARDB PF07705.6 gi|282165121|ref|YP_003357506.1| - 0.039 14.0 0.2 0.064 13.3 0.1 1.4 1 0 0 1 1 1 0 CARDB Myco_19_kDa PF05481.7 gi|282165121|ref|YP_003357506.1| - 3.3 7.5 10.4 2.2 8.0 5.8 1.8 2 1 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen NiFeSe_Hases PF00374.14 gi|282165122|ref|YP_003357507.1| - 2.8e-33 115.4 3.1 3.5e-14 52.4 0.0 4.3 2 2 2 4 4 4 4 Nickel-dependent hydrogenase Herpes_pp85 PF04637.7 gi|282165122|ref|YP_003357507.1| - 0.14 10.4 0.0 0.21 9.8 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) GCC2_GCC3 PF07699.8 gi|282165122|ref|YP_003357507.1| - 0.21 11.1 0.6 2.1 7.9 0.0 2.5 3 0 0 3 3 3 0 GCC2 and GCC3 Oxidored_q6 PF01058.17 gi|282165123|ref|YP_003357508.1| - 4.7e-23 81.2 0.0 4.7e-23 81.2 0.0 1.8 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|282165123|ref|YP_003357508.1| - 1.2e-13 50.0 17.1 6.4e-09 35.0 3.2 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282165123|ref|YP_003357508.1| - 3.2e-11 42.8 11.0 3.2e-11 42.8 7.6 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282165123|ref|YP_003357508.1| - 1.7e-09 37.9 14.6 3.1e-09 37.0 8.7 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282165123|ref|YP_003357508.1| - 8.4e-09 35.5 11.1 8.4e-09 35.5 7.7 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282165123|ref|YP_003357508.1| - 1.1e-08 34.5 17.8 5.4e-06 26.0 2.8 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282165123|ref|YP_003357508.1| - 8e-08 31.7 18.8 9e-06 25.3 2.2 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282165123|ref|YP_003357508.1| - 3.4e-07 30.0 11.8 1.2e-06 28.2 6.8 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282165123|ref|YP_003357508.1| - 1.2e-06 29.1 9.4 0.00042 21.0 1.0 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|282165123|ref|YP_003357508.1| - 4.7e-06 26.5 16.9 0.0016 18.6 1.9 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|282165123|ref|YP_003357508.1| - 2.8e-05 24.0 25.5 0.00059 19.8 10.3 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282165123|ref|YP_003357508.1| - 0.00011 22.5 12.2 0.032 14.6 2.1 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|282165123|ref|YP_003357508.1| - 0.00069 19.9 18.4 0.0092 16.3 1.5 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282165123|ref|YP_003357508.1| - 0.00093 19.5 17.6 0.0049 17.2 2.7 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282165123|ref|YP_003357508.1| - 0.0023 18.4 1.3 0.0023 18.4 0.9 3.2 4 0 0 4 4 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|282165123|ref|YP_003357508.1| - 0.37 11.4 26.7 0.12 12.9 5.3 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain DUF164 PF02591.10 gi|282165123|ref|YP_003357508.1| - 5.8 6.8 8.9 38 4.2 4.7 2.5 2 0 0 2 2 2 0 Putative zinc ribbon domain FrhB_FdhB_C PF04432.8 gi|282165124|ref|YP_003357509.1| - 1e-36 125.7 0.0 1.8e-36 124.9 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|282165124|ref|YP_003357509.1| - 1.4e-23 82.5 0.0 2.5e-23 81.7 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Methyltransf_11 PF08241.7 gi|282165125|ref|YP_003357510.1| - 9.3e-23 80.5 0.0 1.4e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282165125|ref|YP_003357510.1| - 9.5e-19 67.6 0.0 1.2e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282165125|ref|YP_003357510.1| - 2.5e-18 66.3 0.0 3.7e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282165125|ref|YP_003357510.1| - 5.2e-17 61.8 0.0 5.9e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282165125|ref|YP_003357510.1| - 1.9e-15 57.3 0.0 3.1e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282165125|ref|YP_003357510.1| - 5.2e-11 42.8 0.0 8.5e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282165125|ref|YP_003357510.1| - 9e-11 41.3 0.0 1.1e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|282165125|ref|YP_003357510.1| - 7.3e-10 38.9 0.0 1.3e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|282165125|ref|YP_003357510.1| - 5.2e-07 29.2 0.0 7.2e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.9 gi|282165125|ref|YP_003357510.1| - 7.9e-07 28.6 0.0 1.2e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain tRNA_U5-meth_tr PF05958.6 gi|282165125|ref|YP_003357510.1| - 3.7e-05 22.5 0.0 8.4e-05 21.4 0.0 1.5 1 1 1 2 2 2 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_24 PF13578.1 gi|282165125|ref|YP_003357510.1| - 0.00054 20.7 0.0 0.00087 20.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|282165125|ref|YP_003357510.1| - 0.00066 19.2 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.7 gi|282165125|ref|YP_003357510.1| - 0.0015 17.4 0.0 0.0018 17.2 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_32 PF13679.1 gi|282165125|ref|YP_003357510.1| - 0.0024 17.5 0.0 0.0033 17.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|282165125|ref|YP_003357510.1| - 0.0031 16.6 0.0 0.0039 16.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.14 gi|282165125|ref|YP_003357510.1| - 0.0061 16.5 0.0 0.017 15.1 0.0 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase MetW PF07021.7 gi|282165125|ref|YP_003357510.1| - 0.007 15.7 0.0 0.0088 15.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW FmrO PF07091.6 gi|282165125|ref|YP_003357510.1| - 0.019 13.9 0.0 0.024 13.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) RrnaAD PF00398.15 gi|282165125|ref|YP_003357510.1| - 0.06 12.3 0.0 0.079 11.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase NNMT_PNMT_TEMT PF01234.12 gi|282165125|ref|YP_003357510.1| - 0.097 11.6 0.0 0.57 9.1 0.0 1.9 1 1 1 2 2 2 0 NNMT/PNMT/TEMT family Methyltrans_SAM PF10672.4 gi|282165125|ref|YP_003357510.1| - 0.15 10.8 0.1 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Radical_SAM PF04055.16 gi|282165126|ref|YP_003357511.1| - 6.7e-18 65.4 0.2 1.9e-17 63.9 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily SinI PF08671.5 gi|282165126|ref|YP_003357511.1| - 0.0094 15.3 1.0 0.11 11.9 0.0 3.0 3 0 0 3 3 3 1 Anti-repressor SinI Radical_SAM PF04055.16 gi|282165127|ref|YP_003357512.1| - 4.6e-14 52.9 0.1 7.7e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|282165128|ref|YP_003357513.1| - 1.5e-11 44.7 0.0 3.8e-11 43.4 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily CofC PF01983.11 gi|282165130|ref|YP_003357515.1| - 1.3e-49 168.1 0.3 1.5e-49 167.8 0.2 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|282165130|ref|YP_003357515.1| - 0.0086 16.1 0.0 0.01 15.9 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain TrbE PF11100.3 gi|282165131|ref|YP_003357516.1| - 0.97 9.3 10.9 1.6 8.6 0.4 3.2 3 0 0 3 3 3 0 Conjugal transfer protein TrbE DUF1297 PF06973.7 gi|282165132|ref|YP_003357517.1| - 7.1e-78 260.2 0.0 9.9e-78 259.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|282165132|ref|YP_003357517.1| - 8e-49 164.5 0.0 1.3e-48 163.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|282165132|ref|YP_003357517.1| - 0.00018 21.2 0.0 0.00082 19.1 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain DUF362 PF04015.7 gi|282165133|ref|YP_003357518.1| - 4.3e-41 140.6 0.0 5.7e-41 140.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Gln-synt_C PF00120.19 gi|282165134|ref|YP_003357519.1| - 6.1e-102 340.2 0.0 7.4e-102 339.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|282165134|ref|YP_003357519.1| - 4.8e-29 99.7 0.1 8.9e-29 98.9 0.1 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain NUDIX PF00293.23 gi|282165135|ref|YP_003357520.1| - 4.8e-18 65.1 0.0 6.1e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Prenyltrans_2 PF13249.1 gi|282165136|ref|YP_003357521.1| - 1.6e-28 99.3 0.0 7e-14 52.1 0.0 2.4 2 0 0 2 2 2 2 Prenyltransferase-like Prenyltrans PF00432.16 gi|282165136|ref|YP_003357521.1| - 1.1e-16 60.0 0.3 5.5e-05 22.6 0.0 6.2 6 1 0 6 6 6 4 Prenyltransferase and squalene oxidase repeat Prenyltrans_1 PF13243.1 gi|282165136|ref|YP_003357521.1| - 7.6e-09 35.5 0.0 0.003 17.5 0.0 3.5 2 2 1 3 3 3 2 Prenyltransferase-like A2M_comp PF07678.9 gi|282165136|ref|YP_003357521.1| - 2.6e-06 26.8 0.0 0.041 13.1 0.0 3.5 3 1 1 4 4 4 2 A-macroglobulin complement component Enolase_C PF00113.17 gi|282165137|ref|YP_003357522.1| - 7.7e-120 399.3 1.4 1.1e-119 398.8 0.9 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|282165137|ref|YP_003357522.1| - 9.9e-59 197.0 0.3 3e-58 195.4 0.0 1.9 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_N PF02746.11 gi|282165137|ref|YP_003357522.1| - 0.013 15.4 0.2 0.028 14.4 0.1 1.5 1 0 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE_C PF13378.1 gi|282165137|ref|YP_003357522.1| - 0.048 13.6 0.1 0.21 11.5 0.0 2.1 2 0 0 2 2 2 0 Enolase C-terminal domain-like E1-E2_ATPase PF00122.15 gi|282165138|ref|YP_003357523.1| - 1e-52 178.4 2.4 1e-52 178.4 1.7 2.5 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|282165138|ref|YP_003357523.1| - 1.8e-25 90.5 0.1 4.2e-25 89.4 0.1 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|282165138|ref|YP_003357523.1| - 1.1e-13 51.7 0.0 1.9e-13 51.0 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|282165138|ref|YP_003357523.1| - 3.1e-05 23.6 0.1 0.00021 20.9 0.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|282165138|ref|YP_003357523.1| - 0.00038 19.8 1.8 0.00043 19.6 0.0 2.1 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Phage_head_fibr PF11133.3 gi|282165138|ref|YP_003357523.1| - 0.005 16.0 0.0 0.0099 15.1 0.0 1.4 1 0 0 1 1 1 1 Head fiber protein Dynamin_N PF00350.18 gi|282165139|ref|YP_003357524.1| - 4.4e-24 85.1 0.1 2e-23 83.0 0.0 2.1 2 0 0 2 2 2 1 Dynamin family GTP_EFTU PF00009.22 gi|282165139|ref|YP_003357524.1| - 3.8e-08 32.9 0.0 3.5e-05 23.3 0.0 2.5 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|282165139|ref|YP_003357524.1| - 5.5e-08 32.7 0.0 1.9e-07 31.0 0.0 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase Septin PF00735.13 gi|282165139|ref|YP_003357524.1| - 0.0012 17.9 0.0 0.0068 15.4 0.0 2.1 2 1 0 2 2 2 1 Septin IIGP PF05049.8 gi|282165139|ref|YP_003357524.1| - 0.0014 17.5 0.0 1.4 7.6 0.0 2.4 2 0 0 2 2 2 2 Interferon-inducible GTPase (IIGP) NPH3 PF03000.9 gi|282165139|ref|YP_003357524.1| - 0.0062 16.0 0.4 0.011 15.2 0.3 1.3 1 0 0 1 1 1 1 NPH3 family FtsK_SpoIIIE PF01580.13 gi|282165139|ref|YP_003357524.1| - 0.0085 15.5 0.4 0.034 13.6 0.0 2.0 2 0 0 2 2 2 1 FtsK/SpoIIIE family FeoB_N PF02421.13 gi|282165139|ref|YP_003357524.1| - 0.01 15.1 0.1 1.5 8.1 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B DUF258 PF03193.11 gi|282165139|ref|YP_003357524.1| - 0.017 14.3 0.0 0.27 10.3 0.0 2.3 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Aldedh PF00171.17 gi|282165139|ref|YP_003357524.1| - 0.42 8.8 3.0 0.67 8.2 2.1 1.2 1 0 0 1 1 1 0 Aldehyde dehydrogenase family CDC37_N PF03234.9 gi|282165139|ref|YP_003357524.1| - 0.49 10.7 4.0 2.9 8.1 0.7 2.4 2 0 0 2 2 2 0 Cdc37 N terminal kinase binding DUF883 PF05957.8 gi|282165139|ref|YP_003357524.1| - 8.2 6.8 10.8 9.9 6.6 0.2 3.0 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF883) GvpK PF05121.7 gi|282165140|ref|YP_003357525.1| - 0.025 14.3 1.6 0.096 12.5 0.7 1.9 1 1 1 2 2 2 0 Gas vesicle protein K MFS_1 PF07690.11 gi|282165141|ref|YP_003357526.1| - 2.2e-37 128.5 40.5 1e-24 86.9 10.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|282165141|ref|YP_003357526.1| - 1.9e-07 29.8 23.1 2.4e-06 26.2 15.9 2.2 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_3 PF05977.8 gi|282165141|ref|YP_003357526.1| - 0.0014 16.8 20.0 0.0077 14.3 13.9 1.8 1 1 0 1 1 1 1 Transmembrane secretion effector Halogen_Hydrol PF10112.4 gi|282165141|ref|YP_003357526.1| - 4.7 6.5 5.2 14 5.0 0.1 2.7 2 0 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF2244 PF10003.4 gi|282165142|ref|YP_003357527.1| - 0.025 13.9 1.1 0.025 13.9 0.7 1.6 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) FA_desaturase PF00487.19 gi|282165142|ref|YP_003357527.1| - 0.15 11.4 0.3 0.23 10.8 0.2 1.3 1 0 0 1 1 1 0 Fatty acid desaturase ILVD_EDD PF00920.16 gi|282165143|ref|YP_003357528.1| - 4.9e-178 592.7 0.0 5.6e-178 592.6 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family F420_ligase PF01996.11 gi|282165144|ref|YP_003357529.1| - 2.4e-65 219.8 0.5 2.9e-65 219.5 0.3 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase NUDIX PF00293.23 gi|282165145|ref|YP_003357530.1| - 5.5e-11 42.2 0.0 6.7e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Chordopox_L2 PF05803.7 gi|282165146|ref|YP_003357531.1| - 1.1 8.9 8.2 0.44 10.2 3.8 1.7 2 0 0 2 2 2 0 Chordopoxvirus L2 protein RDD PF06271.7 gi|282165146|ref|YP_003357531.1| - 1.7 8.5 6.9 2.8 7.8 4.8 1.3 1 0 0 1 1 1 0 RDD family DUF2628 PF10947.3 gi|282165146|ref|YP_003357531.1| - 1.8 8.4 5.0 3.1 7.6 3.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) ATP-grasp PF02222.17 gi|282165147|ref|YP_003357532.1| - 1.4e-39 135.1 0.0 2.5e-39 134.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|282165147|ref|YP_003357532.1| - 6.8e-17 61.7 0.0 1.3e-16 60.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|282165147|ref|YP_003357532.1| - 4.1e-09 36.1 0.0 6.9e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.1 gi|282165147|ref|YP_003357532.1| - 1.4e-07 30.6 0.1 2.1e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|282165147|ref|YP_003357532.1| - 1.8e-05 24.1 0.1 3.8e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|282165147|ref|YP_003357532.1| - 7.3e-05 22.3 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain 2-Hacid_dh_C PF02826.14 gi|282165147|ref|YP_003357532.1| - 0.0029 16.7 0.0 0.0059 15.7 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|282165147|ref|YP_003357532.1| - 0.0066 16.5 0.1 0.014 15.5 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain ATPgrasp_ST PF14397.1 gi|282165147|ref|YP_003357532.1| - 0.02 14.0 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp ATP-grasp_5 PF13549.1 gi|282165147|ref|YP_003357532.1| - 0.089 11.9 0.0 0.2 10.8 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain MutS_V PF00488.16 gi|282165148|ref|YP_003357533.1| - 1.6e-23 83.3 0.0 3e-23 82.4 0.0 1.4 1 0 0 1 1 1 1 MutS domain V AAA_14 PF13173.1 gi|282165148|ref|YP_003357533.1| - 0.0018 18.2 0.1 0.0062 16.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|282165148|ref|YP_003357533.1| - 0.016 15.3 0.0 0.049 13.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|282165148|ref|YP_003357533.1| - 0.041 14.0 0.0 1.6 8.8 0.0 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Redoxin PF08534.5 gi|282165148|ref|YP_003357533.1| - 0.14 11.6 0.0 1.8 8.1 0.0 2.2 2 0 0 2 2 2 0 Redoxin MutS_V PF00488.16 gi|282165149|ref|YP_003357534.1| - 6e-25 88.0 0.0 9e-25 87.4 0.0 1.2 1 0 0 1 1 1 1 MutS domain V AAA_23 PF13476.1 gi|282165149|ref|YP_003357534.1| - 0.026 14.8 0.0 0.063 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|282165149|ref|YP_003357534.1| - 0.046 13.1 0.1 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family RNA_helicase PF00910.17 gi|282165149|ref|YP_003357534.1| - 0.089 12.9 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.1 gi|282165149|ref|YP_003357534.1| - 0.13 11.8 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Gln-synt_C PF00120.19 gi|282165150|ref|YP_003357535.1| - 5.9e-99 330.4 0.0 7.3e-99 330.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|282165150|ref|YP_003357535.1| - 4.3e-32 109.5 0.1 7.9e-32 108.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain OB_RNB PF08206.6 gi|282165150|ref|YP_003357535.1| - 0.043 13.3 0.0 1 8.8 0.0 2.4 2 0 0 2 2 2 0 Ribonuclease B OB domain Glug PF07581.7 gi|282165150|ref|YP_003357535.1| - 0.058 13.6 0.2 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 The GLUG motif DUF1297 PF06973.7 gi|282165151|ref|YP_003357536.1| - 2.6e-68 229.0 0.1 1.1e-67 227.0 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|282165151|ref|YP_003357536.1| - 6.8e-42 142.1 0.0 1.1e-41 141.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) DUF1297 PF06973.7 gi|282165152|ref|YP_003357537.1| - 3.9e-72 241.5 0.0 5.4e-72 241.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|282165152|ref|YP_003357537.1| - 1.8e-45 153.7 0.0 2.7e-45 153.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|282165152|ref|YP_003357537.1| - 0.00089 19.0 0.0 0.011 15.5 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain Pyr_redox_2 PF07992.9 gi|282165153|ref|YP_003357538.1| - 4.7e-11 42.9 1.0 0.0001 22.2 0.1 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|282165153|ref|YP_003357538.1| - 1.1e-10 41.0 0.8 4.7e-05 22.4 0.0 2.7 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|282165153|ref|YP_003357538.1| - 3.9e-10 38.7 0.8 1.1e-05 24.1 0.4 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.22 gi|282165153|ref|YP_003357538.1| - 1.8e-08 34.6 0.4 0.011 16.1 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|282165153|ref|YP_003357538.1| - 2.3e-08 33.5 0.0 6.5e-07 28.7 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|282165153|ref|YP_003357538.1| - 1.6e-06 27.2 0.6 0.003 16.4 0.1 2.5 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.17 gi|282165153|ref|YP_003357538.1| - 1.1e-05 24.5 1.7 0.11 11.3 0.0 3.1 3 0 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|282165153|ref|YP_003357538.1| - 1.4e-05 24.9 0.1 4.6e-05 23.3 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|282165153|ref|YP_003357538.1| - 3.4e-05 23.6 0.0 0.074 12.8 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Thi4 PF01946.12 gi|282165153|ref|YP_003357538.1| - 8.2e-05 21.8 1.4 0.0042 16.2 0.1 2.6 3 0 0 3 3 3 1 Thi4 family Lycopene_cycl PF05834.7 gi|282165153|ref|YP_003357538.1| - 0.00016 20.7 0.0 0.43 9.4 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|282165153|ref|YP_003357538.1| - 0.041 12.5 0.2 0.12 10.9 0.1 1.7 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_7 PF13241.1 gi|282165153|ref|YP_003357538.1| - 0.058 13.6 0.1 0.12 12.6 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.13 gi|282165153|ref|YP_003357538.1| - 0.071 13.1 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain DAO PF01266.19 gi|282165154|ref|YP_003357539.1| - 1.8e-09 36.9 0.5 5.7e-07 28.7 0.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|282165154|ref|YP_003357539.1| - 7.9e-08 31.1 0.4 0.0088 14.5 0.3 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|282165154|ref|YP_003357539.1| - 2.8e-07 30.6 1.2 0.024 14.5 0.0 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|282165154|ref|YP_003357539.1| - 2.5e-05 23.3 1.2 0.044 12.6 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain Pyr_redox PF00070.22 gi|282165154|ref|YP_003357539.1| - 5.5e-05 23.4 1.1 0.014 15.8 0.1 2.9 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|282165154|ref|YP_003357539.1| - 6.3e-05 22.1 0.1 0.053 12.5 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_9 PF13454.1 gi|282165154|ref|YP_003357539.1| - 0.00093 18.9 0.1 0.85 9.3 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.17 gi|282165154|ref|YP_003357539.1| - 0.0034 16.3 2.6 0.073 11.9 0.0 2.9 3 0 0 3 3 3 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|282165154|ref|YP_003357539.1| - 0.0048 16.8 0.0 0.017 15.1 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|282165154|ref|YP_003357539.1| - 0.011 14.8 0.0 0.031 13.3 0.0 1.7 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|282165154|ref|YP_003357539.1| - 0.022 13.6 0.1 0.38 9.6 0.0 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|282165154|ref|YP_003357539.1| - 0.049 13.6 0.0 0.54 10.2 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase APH PF01636.18 gi|282165155|ref|YP_003357540.1| - 6.6e-09 35.8 2.4 4.2e-06 26.6 0.0 2.6 1 1 2 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|282165155|ref|YP_003357540.1| - 1.4e-07 30.9 0.0 2.1e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.17 gi|282165155|ref|YP_003357540.1| - 5.8e-07 29.0 0.4 1.1e-06 28.0 0.0 1.6 2 0 0 2 2 2 1 RIO1 family WaaY PF06176.6 gi|282165155|ref|YP_003357540.1| - 3.8e-05 23.0 0.2 8.5e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 Lipopolysaccharide core biosynthesis protein (WaaY) Kdo PF06293.9 gi|282165155|ref|YP_003357540.1| - 4.1e-05 22.7 0.3 0.0005 19.1 0.0 2.6 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family DUF2304 PF10066.4 gi|282165156|ref|YP_003357541.1| - 0.012 15.4 0.3 0.015 15.1 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) HAMP PF00672.20 gi|282165156|ref|YP_003357541.1| - 0.023 14.8 0.1 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 HAMP domain ABC_membrane_3 PF13748.1 gi|282165156|ref|YP_003357541.1| - 0.065 12.2 0.1 0.073 12.1 0.1 1.1 1 0 0 1 1 1 0 ABC transporter transmembrane region FtsL PF04999.8 gi|282165156|ref|YP_003357541.1| - 0.11 12.1 0.2 0.12 12.1 0.1 1.1 1 0 0 1 1 1 0 Cell division protein FtsL DUF4635 PF15466.1 gi|282165156|ref|YP_003357541.1| - 1.9 7.7 4.1 3.1 7.0 0.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4635) CbiA PF01656.18 gi|282165157|ref|YP_003357542.1| - 1.5e-26 93.0 1.2 2e-26 92.5 0.8 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|282165157|ref|YP_003357542.1| - 1.2e-13 50.8 3.3 1.4e-12 47.3 2.3 1.9 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|282165157|ref|YP_003357542.1| - 4.6e-11 42.9 0.0 6.2e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|282165157|ref|YP_003357542.1| - 3.5e-08 33.1 0.1 1.5e-07 31.0 0.0 1.8 1 1 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|282165157|ref|YP_003357542.1| - 6.3e-06 25.4 0.2 2e-05 23.8 0.1 1.7 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|282165157|ref|YP_003357542.1| - 0.00033 19.8 2.0 0.0004 19.5 0.4 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase ParA PF10609.4 gi|282165157|ref|YP_003357542.1| - 0.002 17.9 0.2 0.0048 16.7 0.1 1.7 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_25 PF13481.1 gi|282165157|ref|YP_003357542.1| - 0.0065 15.8 0.6 0.014 14.8 0.4 1.7 1 1 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|282165157|ref|YP_003357542.1| - 0.028 13.4 1.0 0.063 12.3 0.7 1.5 1 0 0 1 1 1 0 VirC1 protein AAA_26 PF13500.1 gi|282165157|ref|YP_003357542.1| - 0.061 12.9 0.1 0.061 12.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain Ribonuc_2-5A PF06479.7 gi|282165158|ref|YP_003357543.1| - 0.011 15.6 0.0 0.052 13.3 0.0 2.0 2 0 0 2 2 2 0 Ribonuclease 2-5A DUF2226 PF09987.4 gi|282165159|ref|YP_003357544.1| - 0.031 13.4 0.0 0.24 10.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2226) Robl_LC7 PF03259.12 gi|282165160|ref|YP_003357545.1| - 7.3e-06 25.4 0.2 1.6e-05 24.4 0.1 1.5 1 0 0 1 1 1 1 Roadblock/LC7 domain Robl_LC7 PF03259.12 gi|282165161|ref|YP_003357546.1| - 3.5e-14 52.1 1.0 4.3e-14 51.8 0.7 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|282165161|ref|YP_003357546.1| - 2.8e-05 23.7 0.1 3.4e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting DUF370 PF04025.7 gi|282165161|ref|YP_003357546.1| - 0.097 12.7 0.3 0.21 11.6 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF370) ACT PF01842.20 gi|282165161|ref|YP_003357546.1| - 0.13 11.7 0.7 1.4 8.4 0.0 2.2 2 0 0 2 2 2 0 ACT domain NiFeSe_Hases PF00374.14 gi|282165162|ref|YP_003357547.1| - 2.1e-35 122.4 0.1 8.1e-19 67.7 0.0 2.9 1 1 1 3 3 3 2 Nickel-dependent hydrogenase TonB_C PF03544.9 gi|282165162|ref|YP_003357547.1| - 0.13 12.4 0.0 27 5.0 0.0 2.7 2 0 0 2 2 2 0 Gram-negative bacterial TonB protein C-terminal Oxidored_q6 PF01058.17 gi|282165163|ref|YP_003357548.1| - 5.4e-30 103.6 0.1 1.9e-29 101.9 0.0 1.9 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit V4R PF02830.13 gi|282165164|ref|YP_003357549.1| - 0.048 13.4 0.0 0.098 12.5 0.0 1.5 1 0 0 1 1 1 0 V4R domain Fer4 PF00037.22 gi|282165165|ref|YP_003357550.1| - 5e-13 48.0 16.5 1.1e-06 28.0 2.8 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282165165|ref|YP_003357550.1| - 5.5e-10 38.8 22.1 1.7e-08 34.1 7.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282165165|ref|YP_003357550.1| - 9e-10 38.6 9.3 1.2e-09 38.2 6.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282165165|ref|YP_003357550.1| - 2.6e-09 37.2 9.7 4.2e-09 36.6 6.4 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282165165|ref|YP_003357550.1| - 2.6e-08 33.3 15.7 3e-06 26.8 2.6 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|282165165|ref|YP_003357550.1| - 9.6e-08 31.5 17.6 8.2e-06 25.4 2.3 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282165165|ref|YP_003357550.1| - 1.9e-07 30.7 12.9 2.1e-07 30.6 8.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282165165|ref|YP_003357550.1| - 5.9e-06 26.9 7.4 0.014 16.1 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|282165165|ref|YP_003357550.1| - 1.1e-05 25.8 11.7 4.1e-05 24.0 0.8 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|282165165|ref|YP_003357550.1| - 1.9e-05 24.5 14.2 0.0016 18.6 1.5 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|282165165|ref|YP_003357550.1| - 3.2e-05 23.8 12.8 0.00023 21.1 9.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282165165|ref|YP_003357550.1| - 8.6e-05 22.8 13.0 0.0034 17.6 1.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282165165|ref|YP_003357550.1| - 0.00045 20.5 11.6 0.0066 16.8 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282165165|ref|YP_003357550.1| - 0.0014 18.9 12.5 0.0036 17.6 1.0 2.2 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|282165165|ref|YP_003357550.1| - 0.035 14.6 21.3 0.065 13.8 2.5 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain GF_recep_IV PF14843.1 gi|282165165|ref|YP_003357550.1| - 0.055 13.0 5.1 0.076 12.6 3.5 1.3 1 0 0 1 1 1 0 Growth factor receptor domain IV Fer4_11 PF13247.1 gi|282165165|ref|YP_003357550.1| - 0.072 12.9 7.0 1.1 9.1 4.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF678 PF05077.7 gi|282165165|ref|YP_003357550.1| - 0.084 12.8 0.4 0.084 12.8 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Fer4_19 PF06902.6 gi|282165165|ref|YP_003357550.1| - 0.11 12.3 6.2 0.22 11.3 4.3 1.6 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster SprT-like PF10263.4 gi|282165166|ref|YP_003357551.1| - 1.8e-19 69.9 5.7 5e-17 61.9 0.1 2.1 1 1 1 2 2 2 2 SprT-like family Desulfoferrod_N PF06397.7 gi|282165166|ref|YP_003357551.1| - 0.018 14.4 2.5 1.1 8.6 0.1 2.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.5 gi|282165166|ref|YP_003357551.1| - 0.12 12.3 13.6 0.21 11.5 1.2 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Cys_rich_CPCC PF14206.1 gi|282165166|ref|YP_003357551.1| - 0.26 10.8 7.7 1.2 8.6 0.5 2.4 2 0 0 2 2 2 0 Cysteine-rich CPCC MU117 PF15474.1 gi|282165166|ref|YP_003357551.1| - 1.1 9.7 8.1 0.8 10.2 1.3 2.4 2 1 0 2 2 2 0 Meiotically up-regulated gene family HypA PF01155.14 gi|282165166|ref|YP_003357551.1| - 2.4 7.8 9.1 0.99 9.1 0.7 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-CSL PF05207.8 gi|282165166|ref|YP_003357551.1| - 3.7 7.1 9.6 47 3.6 6.5 2.4 1 1 0 1 1 1 0 CSL zinc finger zf-C2H2 PF00096.21 gi|282165166|ref|YP_003357551.1| - 6.2 7.3 10.6 2 8.9 0.4 3.5 3 0 0 3 3 3 0 Zinc finger, C2H2 type Zn_Tnp_IS1595 PF12760.2 gi|282165166|ref|YP_003357551.1| - 9.2 6.1 13.4 12 5.7 0.3 3.3 2 1 0 2 2 2 0 Transposase zinc-ribbon domain PspC PF04024.7 gi|282165167|ref|YP_003357552.1| - 0.008 15.6 0.1 0.008 15.6 0.1 3.0 3 1 0 3 3 3 1 PspC domain DUF1686 PF07937.6 gi|282165167|ref|YP_003357552.1| - 0.054 13.1 2.5 2.4 7.7 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1686) PIRT PF15099.1 gi|282165167|ref|YP_003357552.1| - 1.5 8.0 6.1 0.48 9.6 1.1 2.1 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family Flavodoxin_3 PF12641.2 gi|282165169|ref|YP_003357554.1| - 6e-11 42.0 0.0 8.1e-11 41.5 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|282165169|ref|YP_003357554.1| - 5.4e-09 36.1 0.0 6.6e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain DUF3296 PF11726.3 gi|282165169|ref|YP_003357554.1| - 0.041 13.4 0.0 0.055 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3296) CxxCxxCC PF03692.10 gi|282165170|ref|YP_003357555.1| - 3.1e-11 43.6 3.8 5.2e-11 42.8 2.6 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain CitX PF03802.9 gi|282165170|ref|YP_003357555.1| - 0.068 12.5 0.0 0.18 11.2 0.0 1.6 2 0 0 2 2 2 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase zf-AN1 PF01428.11 gi|282165171|ref|YP_003357556.1| - 3e-08 33.4 8.4 4.4e-08 32.8 5.8 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger zf-HIT PF04438.11 gi|282165171|ref|YP_003357556.1| - 1.1 8.9 7.7 1.8 8.3 5.3 1.3 1 0 0 1 1 1 0 HIT zinc finger Cupin_2 PF07883.6 gi|282165173|ref|YP_003357558.1| - 1.3e-16 59.8 0.1 1.7e-16 59.4 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|282165173|ref|YP_003357558.1| - 0.00029 20.5 0.0 0.00037 20.1 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|282165173|ref|YP_003357558.1| - 0.00064 19.0 0.0 0.00079 18.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.3 gi|282165173|ref|YP_003357558.1| - 0.097 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Mif2/CENP-C like GyrI-like PF06445.10 gi|282165174|ref|YP_003357559.1| - 5.7e-19 68.6 0.0 6.4e-19 68.4 0.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.1 gi|282165174|ref|YP_003357559.1| - 1.5e-07 31.4 0.0 1.8e-07 31.3 0.0 1.0 1 0 0 1 1 1 1 Integron-associated effector binding protein SOUL PF04832.7 gi|282165174|ref|YP_003357559.1| - 0.00034 20.1 0.0 0.0035 16.8 0.0 1.9 1 1 0 2 2 2 1 SOUL heme-binding protein ILVD_EDD PF00920.16 gi|282165174|ref|YP_003357559.1| - 0.019 13.4 0.1 0.023 13.1 0.0 1.1 1 0 0 1 1 1 0 Dehydratase family TrkH PF02386.11 gi|282165175|ref|YP_003357560.1| - 1.4e-59 201.4 16.9 1.4e-59 201.4 11.7 2.2 2 0 0 2 2 2 1 Cation transport protein TrkA_N PF02254.13 gi|282165176|ref|YP_003357561.1| - 1.7e-24 86.0 2.2 2.6e-24 85.4 1.5 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|282165176|ref|YP_003357561.1| - 2.5e-15 55.8 3.0 2.6e-15 55.7 0.4 2.2 2 1 0 2 2 2 1 TrkA-C domain Saccharop_dh PF03435.13 gi|282165176|ref|YP_003357561.1| - 4.1e-05 22.7 0.4 4.3e-05 22.6 0.3 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|282165176|ref|YP_003357561.1| - 7.7e-05 22.5 0.1 0.00059 19.7 0.1 2.0 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|282165176|ref|YP_003357561.1| - 0.0004 20.4 0.2 0.00052 20.0 0.2 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_7 PF13241.1 gi|282165176|ref|YP_003357561.1| - 0.00052 20.2 0.3 0.00095 19.3 0.2 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|282165176|ref|YP_003357561.1| - 0.00072 19.9 0.6 0.0075 16.6 0.1 2.7 2 2 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|282165176|ref|YP_003357561.1| - 0.0018 17.4 0.0 0.0029 16.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|282165176|ref|YP_003357561.1| - 0.003 17.8 0.0 0.0043 17.3 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain Shikimate_DH PF01488.15 gi|282165176|ref|YP_003357561.1| - 0.0073 16.4 0.4 0.012 15.7 0.3 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|282165176|ref|YP_003357561.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|282165176|ref|YP_003357561.1| - 0.018 14.9 1.3 0.056 13.4 0.9 1.8 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain adh_short PF00106.20 gi|282165176|ref|YP_003357561.1| - 0.049 13.5 0.2 0.09 12.6 0.1 1.5 1 1 0 1 1 1 0 short chain dehydrogenase Elf1 PF05129.8 gi|282165178|ref|YP_003357563.1| - 0.0046 16.6 0.5 0.0051 16.4 0.3 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|282165178|ref|YP_003357563.1| - 0.007 16.6 0.2 0.0076 16.5 0.1 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|282165178|ref|YP_003357563.1| - 0.031 13.9 4.4 0.031 13.9 3.1 1.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|282165178|ref|YP_003357563.1| - 0.034 13.7 4.6 0.034 13.7 3.2 1.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|282165178|ref|YP_003357563.1| - 0.044 13.8 2.2 0.078 13.0 1.5 1.4 1 0 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-CSL PF05207.8 gi|282165178|ref|YP_003357563.1| - 0.056 12.9 0.5 0.074 12.5 0.3 1.2 1 0 0 1 1 1 0 CSL zinc finger CCG PF02754.11 gi|282165178|ref|YP_003357563.1| - 0.13 12.2 1.3 5 7.2 0.4 2.3 1 1 1 2 2 2 0 Cysteine-rich domain tRNA-synt_1f PF01921.13 gi|282165178|ref|YP_003357563.1| - 0.15 10.6 0.2 0.18 10.4 0.2 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (K) DUF2162 PF09930.4 gi|282165178|ref|YP_003357563.1| - 1.3 8.1 3.9 3 6.9 2.5 1.5 1 1 1 2 2 2 0 Predicted transporter (DUF2162) Phos_pyr_kin PF08543.7 gi|282165179|ref|YP_003357564.1| - 3.8e-86 288.2 1.1 4.3e-86 288.1 0.8 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|282165179|ref|YP_003357564.1| - 3.1e-08 33.0 0.4 4e-08 32.7 0.2 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.10 gi|282165179|ref|YP_003357564.1| - 0.0035 16.5 1.8 0.0067 15.6 1.2 1.4 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family ABC2_membrane PF01061.19 gi|282165181|ref|YP_003357566.1| - 2.9e-30 105.0 18.2 2.9e-30 105.0 12.6 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|282165181|ref|YP_003357566.1| - 5.2e-14 52.0 29.0 5.2e-14 52.0 20.1 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|282165182|ref|YP_003357567.1| - 1.5e-33 116.0 0.0 2.1e-33 115.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282165182|ref|YP_003357567.1| - 7.8e-20 72.0 0.0 3.2e-14 53.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282165182|ref|YP_003357567.1| - 7.7e-08 31.7 0.0 0.00015 20.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|282165182|ref|YP_003357567.1| - 0.00012 22.4 0.1 0.00034 21.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|282165182|ref|YP_003357567.1| - 0.0095 16.0 0.3 0.24 11.5 0.2 2.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|282165182|ref|YP_003357567.1| - 0.014 14.6 0.0 0.27 10.4 0.0 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|282165182|ref|YP_003357567.1| - 0.022 14.3 0.0 0.044 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|282165182|ref|YP_003357567.1| - 0.022 15.5 0.0 0.041 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|282165182|ref|YP_003357567.1| - 0.026 14.4 0.0 0.17 11.7 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|282165182|ref|YP_003357567.1| - 0.038 13.4 0.1 0.14 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|282165182|ref|YP_003357567.1| - 0.042 14.0 0.0 0.23 11.6 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|282165182|ref|YP_003357567.1| - 0.048 12.3 0.0 0.062 11.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein IstB_IS21 PF01695.12 gi|282165182|ref|YP_003357567.1| - 0.051 13.0 0.0 3.2 7.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|282165182|ref|YP_003357567.1| - 0.054 13.3 0.0 0.18 11.7 0.0 2.0 1 1 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.7 gi|282165182|ref|YP_003357567.1| - 0.14 11.2 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_13 PF13166.1 gi|282165182|ref|YP_003357567.1| - 0.15 10.4 0.0 0.28 9.6 0.0 1.4 2 0 0 2 2 2 0 AAA domain AA_kinase PF00696.23 gi|282165183|ref|YP_003357568.1| - 5.2e-52 176.7 0.3 5.2e-52 176.7 0.2 1.5 2 0 0 2 2 2 1 Amino acid kinase family ACT PF01842.20 gi|282165183|ref|YP_003357568.1| - 2.3e-24 84.4 1.9 5.7e-12 44.8 0.0 3.2 3 0 0 3 3 3 2 ACT domain ACT_7 PF13840.1 gi|282165183|ref|YP_003357568.1| - 1.6e-21 75.5 2.3 2e-11 43.2 0.0 3.0 3 0 0 3 3 3 2 ACT domain ACT_6 PF13740.1 gi|282165183|ref|YP_003357568.1| - 0.0023 17.6 0.8 0.08 12.6 0.0 3.2 3 0 0 3 3 3 1 ACT domain SDH_sah PF01972.11 gi|282165184|ref|YP_003357569.1| - 2.1e-111 371.2 0.7 2.3e-111 371.1 0.5 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|282165184|ref|YP_003357569.1| - 5.6e-06 26.1 0.1 2e-05 24.3 0.0 1.8 2 1 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.13 gi|282165184|ref|YP_003357569.1| - 0.00041 20.1 0.0 0.001 18.8 0.0 1.7 2 0 0 2 2 2 1 Peptidase family S49 Selenoprotein_S PF06936.6 gi|282165184|ref|YP_003357569.1| - 0.064 12.7 0.3 0.093 12.2 0.2 1.2 1 0 0 1 1 1 0 Selenoprotein S (SelS) WBP-1 PF11669.3 gi|282165184|ref|YP_003357569.1| - 0.13 12.3 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 WW domain-binding protein 1 DUF2207 PF09972.4 gi|282165185|ref|YP_003357570.1| - 0.032 12.8 0.0 0.043 12.4 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) FYVE PF01363.16 gi|282165186|ref|YP_003357571.1| - 0.0032 17.3 2.3 0.0043 16.9 1.6 1.1 1 0 0 1 1 1 1 FYVE zinc finger NMD3 PF04981.8 gi|282165186|ref|YP_003357571.1| - 0.0088 15.1 0.3 0.0088 15.1 0.2 1.1 1 0 0 1 1 1 1 NMD3 family TF_Zn_Ribbon PF08271.7 gi|282165186|ref|YP_003357571.1| - 0.01 15.1 0.6 0.015 14.6 0.4 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|282165186|ref|YP_003357571.1| - 0.026 14.2 0.7 3.4 7.5 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Tmemb_55A PF09788.4 gi|282165186|ref|YP_003357571.1| - 0.027 13.5 0.2 0.03 13.4 0.1 1.0 1 0 0 1 1 1 0 Transmembrane protein 55A Nudix_N_2 PF14803.1 gi|282165186|ref|YP_003357571.1| - 0.038 13.6 0.7 0.08 12.6 0.5 1.6 1 1 0 1 1 1 0 Nudix N-terminal zf-UBR PF02207.15 gi|282165186|ref|YP_003357571.1| - 0.043 13.5 0.6 0.055 13.2 0.4 1.2 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) A2L_zn_ribbon PF08792.5 gi|282165186|ref|YP_003357571.1| - 0.05 13.0 1.5 2.8 7.4 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain ZZ PF00569.12 gi|282165186|ref|YP_003357571.1| - 0.082 12.4 0.8 7 6.2 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, ZZ type FYVE_2 PF02318.11 gi|282165186|ref|YP_003357571.1| - 0.088 12.7 0.7 0.1 12.5 0.5 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger ADK_lid PF05191.9 gi|282165186|ref|YP_003357571.1| - 0.11 12.2 1.1 2.1 8.0 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid M157 PF11624.3 gi|282165186|ref|YP_003357571.1| - 0.12 11.4 1.1 0.96 8.5 0.0 1.9 1 1 1 2 2 2 0 MHC class I-like protein M157 Elf1 PF05129.8 gi|282165186|ref|YP_003357571.1| - 0.25 11.0 2.9 0.3 10.8 2.0 1.3 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.5 gi|282165186|ref|YP_003357571.1| - 0.27 11.2 2.6 0.63 10.0 1.8 1.7 1 1 0 1 1 1 0 Zinc ribbon domain DM PF00751.13 gi|282165186|ref|YP_003357571.1| - 0.28 10.7 2.1 0.8 9.2 1.4 1.8 1 1 0 1 1 1 0 DM DNA binding domain TFIIS_C PF01096.13 gi|282165186|ref|YP_003357571.1| - 0.29 10.7 3.9 12 5.6 2.7 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zf-BED PF02892.10 gi|282165186|ref|YP_003357571.1| - 0.46 10.2 0.1 0.46 10.2 0.1 2.0 1 1 1 2 2 2 0 BED zinc finger KaiC PF06745.8 gi|282165187|ref|YP_003357572.1| - 2.2e-33 115.2 0.0 3.1e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|282165187|ref|YP_003357572.1| - 1e-08 34.8 0.0 1.5e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|282165187|ref|YP_003357572.1| - 9.9e-05 22.2 0.0 0.00022 21.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|282165187|ref|YP_003357572.1| - 0.00028 20.3 0.0 0.00042 19.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.1 gi|282165187|ref|YP_003357572.1| - 0.0051 16.4 0.0 0.0089 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|282165187|ref|YP_003357572.1| - 0.0084 15.2 0.1 0.014 14.4 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein TrwB_AAD_bind PF10412.4 gi|282165187|ref|YP_003357572.1| - 0.011 14.3 0.1 0.018 13.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|282165187|ref|YP_003357572.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|282165187|ref|YP_003357572.1| - 0.014 14.2 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_19 PF13245.1 gi|282165187|ref|YP_003357572.1| - 0.02 14.6 0.0 0.047 13.4 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain PhoH PF02562.11 gi|282165187|ref|YP_003357572.1| - 0.037 13.2 0.0 0.059 12.5 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_18 PF13238.1 gi|282165187|ref|YP_003357572.1| - 0.051 13.8 0.1 0.22 11.8 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|282165187|ref|YP_003357572.1| - 0.057 13.1 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad51 PF08423.6 gi|282165187|ref|YP_003357572.1| - 0.058 12.2 0.2 0.086 11.7 0.1 1.2 1 0 0 1 1 1 0 Rad51 AAA PF00004.24 gi|282165187|ref|YP_003357572.1| - 0.071 13.3 0.1 0.14 12.3 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Robl_LC7 PF03259.12 gi|282165188|ref|YP_003357573.1| - 0.00065 19.2 0.1 0.0014 18.1 0.1 1.5 1 1 0 1 1 1 1 Roadblock/LC7 domain SHOCT PF09851.4 gi|282165188|ref|YP_003357573.1| - 0.1 12.0 0.1 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Short C-terminal domain Peptidase_M29 PF02073.10 gi|282165189|ref|YP_003357574.1| - 1.4e-18 66.8 1.3 1.1e-17 63.9 0.2 2.5 2 1 0 2 2 2 1 Thermophilic metalloprotease (M29) HTH_3 PF01381.17 gi|282165190|ref|YP_003357575.1| - 3.7e-10 39.5 0.1 1.6e-09 37.4 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|282165190|ref|YP_003357575.1| - 2e-06 27.7 0.0 6.5e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|282165190|ref|YP_003357575.1| - 8.6e-06 25.8 0.0 1.8e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|282165190|ref|YP_003357575.1| - 0.0029 17.7 0.0 0.0057 16.8 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_7 PF02796.10 gi|282165190|ref|YP_003357575.1| - 0.0079 16.0 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_psq PF05225.11 gi|282165190|ref|YP_003357575.1| - 0.14 11.6 0.4 2.5 7.7 0.0 2.6 2 0 0 2 2 2 0 helix-turn-helix, Psq domain NMT1_2 PF13379.1 gi|282165191|ref|YP_003357576.1| - 1.8e-43 148.7 0.0 2.7e-43 148.1 0.0 1.2 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|282165191|ref|YP_003357576.1| - 1.4e-27 96.6 0.0 1.9e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|282165191|ref|YP_003357576.1| - 1e-09 38.1 0.0 1.5e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|282165191|ref|YP_003357576.1| - 2.8e-08 33.2 0.0 5.6e-08 32.3 0.0 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 OpuAC PF04069.7 gi|282165191|ref|YP_003357576.1| - 2e-06 27.3 0.0 3e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system DUF3834 PF12916.2 gi|282165191|ref|YP_003357576.1| - 0.00036 19.5 0.0 0.0067 15.4 0.0 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF3834) TAT_signal PF10518.4 gi|282165191|ref|YP_003357576.1| - 0.00051 19.8 3.2 0.00098 18.9 2.2 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|282165192|ref|YP_003357577.1| - 8.1e-23 80.8 19.8 8.1e-23 80.8 13.7 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|282165193|ref|YP_003357578.1| - 8.6e-32 110.3 0.0 1.4e-31 109.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282165193|ref|YP_003357578.1| - 1.7e-10 41.3 0.0 5.6e-05 23.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA PF00004.24 gi|282165193|ref|YP_003357578.1| - 2.6e-06 27.6 0.4 4.1e-05 23.7 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|282165193|ref|YP_003357578.1| - 1.2e-05 25.3 0.6 0.0002 21.4 0.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|282165193|ref|YP_003357578.1| - 2.9e-05 23.2 0.0 0.029 13.4 0.0 2.2 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|282165193|ref|YP_003357578.1| - 4.4e-05 22.8 0.0 0.17 11.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|282165193|ref|YP_003357578.1| - 5.3e-05 24.0 2.0 0.00078 20.2 0.2 2.3 1 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|282165193|ref|YP_003357578.1| - 6.7e-05 22.1 0.1 0.00017 20.7 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|282165193|ref|YP_003357578.1| - 0.00029 20.9 0.2 0.0017 18.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|282165193|ref|YP_003357578.1| - 0.00084 19.1 0.2 0.024 14.3 0.0 2.3 2 1 0 2 2 2 1 Archaeal ATPase AAA_23 PF13476.1 gi|282165193|ref|YP_003357578.1| - 0.0009 19.6 0.0 0.0013 19.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|282165193|ref|YP_003357578.1| - 0.0011 18.8 0.0 0.0025 17.7 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|282165193|ref|YP_003357578.1| - 0.0014 18.1 0.2 0.0031 17.0 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain NACHT PF05729.7 gi|282165193|ref|YP_003357578.1| - 0.0015 18.2 0.2 0.0056 16.3 0.0 1.9 2 0 0 2 2 2 1 NACHT domain Rad17 PF03215.10 gi|282165193|ref|YP_003357578.1| - 0.0021 16.8 0.0 0.0032 16.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|282165193|ref|YP_003357578.1| - 0.004 16.6 0.0 0.0079 15.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|282165193|ref|YP_003357578.1| - 0.0056 16.5 0.3 0.015 15.1 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|282165193|ref|YP_003357578.1| - 0.0066 16.7 1.0 0.025 14.8 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|282165193|ref|YP_003357578.1| - 0.011 15.7 0.2 0.039 13.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|282165193|ref|YP_003357578.1| - 0.015 15.8 0.0 0.035 14.6 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein NB-ARC PF00931.17 gi|282165193|ref|YP_003357578.1| - 0.015 14.1 0.3 0.029 13.2 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_14 PF13173.1 gi|282165193|ref|YP_003357578.1| - 0.016 15.0 0.1 0.063 13.1 0.0 2.0 2 1 1 3 3 3 0 AAA domain AAA_5 PF07728.9 gi|282165193|ref|YP_003357578.1| - 0.031 14.0 0.1 0.083 12.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|282165193|ref|YP_003357578.1| - 0.031 13.6 0.1 0.076 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|282165193|ref|YP_003357578.1| - 0.037 13.7 0.0 0.089 12.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|282165193|ref|YP_003357578.1| - 0.039 14.1 0.1 0.088 12.9 0.1 1.6 1 0 0 1 1 1 0 RNA helicase Adeno_IVa2 PF02456.10 gi|282165193|ref|YP_003357578.1| - 0.044 12.4 0.0 0.072 11.7 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein NTPase_1 PF03266.10 gi|282165193|ref|YP_003357578.1| - 0.099 12.3 0.1 4.1 7.1 0.0 2.3 2 0 0 2 2 2 0 NTPase MutS_V PF00488.16 gi|282165193|ref|YP_003357578.1| - 0.11 11.9 0.0 0.25 10.7 0.0 1.5 2 0 0 2 2 2 0 MutS domain V SbcCD_C PF13558.1 gi|282165193|ref|YP_003357578.1| - 0.12 12.3 0.0 0.26 11.2 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATP-synt_ab PF00006.20 gi|282165193|ref|YP_003357578.1| - 0.13 11.7 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain KaiC PF06745.8 gi|282165194|ref|YP_003357579.1| - 1.5e-58 197.6 0.0 1.7e-58 197.4 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|282165194|ref|YP_003357579.1| - 1.4e-11 44.2 0.0 1.9e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|282165194|ref|YP_003357579.1| - 3.4e-06 25.6 0.7 0.0016 16.8 0.1 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein DnaB_C PF03796.10 gi|282165194|ref|YP_003357579.1| - 1.7e-05 23.8 0.0 2.5e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_19 PF13245.1 gi|282165194|ref|YP_003357579.1| - 0.00085 19.0 0.4 0.0016 18.1 0.2 1.4 1 0 0 1 1 1 1 Part of AAA domain T2SE PF00437.15 gi|282165194|ref|YP_003357579.1| - 0.0036 16.2 0.0 0.0059 15.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|282165194|ref|YP_003357579.1| - 0.0056 16.1 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF2075 PF09848.4 gi|282165194|ref|YP_003357579.1| - 0.0098 14.9 0.0 0.012 14.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) RecA PF00154.16 gi|282165194|ref|YP_003357579.1| - 0.0098 14.9 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_22 PF13401.1 gi|282165194|ref|YP_003357579.1| - 0.012 15.7 0.0 0.018 15.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|282165194|ref|YP_003357579.1| - 0.021 14.4 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|282165194|ref|YP_003357579.1| - 0.029 13.8 0.4 0.057 12.9 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|282165194|ref|YP_003357579.1| - 0.031 13.7 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.1 gi|282165194|ref|YP_003357579.1| - 0.033 14.0 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|282165194|ref|YP_003357579.1| - 0.044 13.7 0.0 0.062 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|282165194|ref|YP_003357579.1| - 0.05 13.8 0.1 0.099 12.8 0.1 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|282165194|ref|YP_003357579.1| - 0.052 13.4 0.0 0.085 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|282165194|ref|YP_003357579.1| - 0.09 12.7 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|282165194|ref|YP_003357579.1| - 0.094 13.5 1.9 0.3 11.8 1.3 1.8 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|282165194|ref|YP_003357579.1| - 0.11 12.0 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|282165194|ref|YP_003357579.1| - 0.12 12.1 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_18 PF13238.1 gi|282165194|ref|YP_003357579.1| - 0.25 11.6 2.4 0.31 11.3 0.9 1.8 2 1 0 2 2 1 0 AAA domain DUF3397 PF11877.3 gi|282165196|ref|YP_003357581.1| - 0.023 14.7 1.9 0.041 13.8 1.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3397) DUF308 PF03729.8 gi|282165196|ref|YP_003357581.1| - 5.1 7.1 10.0 2.1 8.3 5.0 1.8 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF3488 PF11992.3 gi|282165197|ref|YP_003357582.1| - 0.067 11.8 1.7 0.12 11.0 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) 60KD_IMP PF02096.15 gi|282165197|ref|YP_003357582.1| - 0.084 12.5 4.4 0.14 11.7 2.9 1.5 1 1 0 1 1 1 0 60Kd inner membrane protein Tetraspannin PF00335.15 gi|282165197|ref|YP_003357582.1| - 0.19 10.9 10.6 1.3 8.2 3.7 3.0 3 0 0 3 3 3 0 Tetraspanin family Trp_oprn_chp PF09534.5 gi|282165197|ref|YP_003357582.1| - 0.35 10.4 1.5 1.2 8.7 1.1 2.0 2 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) SurA_N_3 PF13624.1 gi|282165197|ref|YP_003357582.1| - 0.7 9.8 0.0 0.7 9.8 0.0 2.1 2 1 1 3 3 3 0 SurA N-terminal domain DUF3325 PF11804.3 gi|282165197|ref|YP_003357582.1| - 1.1 9.2 5.9 0.2 11.5 1.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3325) DUF4131 PF13567.1 gi|282165197|ref|YP_003357582.1| - 2.9 7.2 6.2 5.9 6.2 3.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) Neurensin PF14927.1 gi|282165197|ref|YP_003357582.1| - 4.4 6.6 7.5 0.71 9.2 0.0 3.0 3 1 0 3 3 3 0 Neurensin CbiX PF01903.12 gi|282165198|ref|YP_003357583.1| - 1.1e-16 60.8 0.1 1.2e-16 60.6 0.1 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|282165198|ref|YP_003357583.1| - 0.00018 20.6 0.0 0.00021 20.4 0.0 1.2 1 1 0 1 1 1 1 Cobalt chelatase (CbiK) ThiC PF01964.13 gi|282165199|ref|YP_003357584.1| - 1.5e-172 573.8 0.0 1.7e-172 573.7 0.0 1.0 1 0 0 1 1 1 1 ThiC family Lactamase_B PF00753.22 gi|282165200|ref|YP_003357585.1| - 3.1e-36 124.8 4.5 3.6e-36 124.6 3.1 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|282165200|ref|YP_003357585.1| - 5.6e-08 32.5 0.0 6.5e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|282165200|ref|YP_003357585.1| - 0.011 15.4 0.0 0.024 14.3 0.0 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Cu_amine_oxid PF01179.15 gi|282165200|ref|YP_003357585.1| - 0.09 11.4 0.0 0.21 10.2 0.0 1.5 2 0 0 2 2 2 0 Copper amine oxidase, enzyme domain HTH_24 PF13412.1 gi|282165202|ref|YP_003357587.1| - 2.3e-13 49.2 1.3 4.8e-13 48.2 0.9 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|282165202|ref|YP_003357587.1| - 9.2e-13 47.5 0.1 1.6e-12 46.7 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|282165202|ref|YP_003357587.1| - 2.4e-12 46.3 0.0 4.4e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|282165202|ref|YP_003357587.1| - 6.5e-07 28.8 0.7 2e-06 27.3 0.2 2.1 2 1 1 3 3 2 1 HTH domain HTH_20 PF12840.2 gi|282165202|ref|YP_003357587.1| - 4.7e-06 26.3 0.0 9e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|282165202|ref|YP_003357587.1| - 5.1e-06 25.9 0.1 2.6e-05 23.6 0.1 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|282165202|ref|YP_003357587.1| - 4.3e-05 23.0 0.2 7.7e-05 22.2 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|282165202|ref|YP_003357587.1| - 5.8e-05 22.6 0.0 0.00012 21.6 0.0 1.6 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|282165202|ref|YP_003357587.1| - 7.5e-05 22.5 0.1 0.00013 21.7 0.1 1.7 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_Tnp_ISL3 PF13542.1 gi|282165202|ref|YP_003357587.1| - 8.3e-05 21.6 0.0 0.00022 20.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.5 gi|282165202|ref|YP_003357587.1| - 0.00022 20.7 0.0 0.0004 19.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Mga PF05043.8 gi|282165202|ref|YP_003357587.1| - 0.00038 20.6 0.9 0.0033 17.6 0.1 2.3 2 1 0 2 2 2 1 Mga helix-turn-helix domain HTH_10 PF04967.7 gi|282165202|ref|YP_003357587.1| - 0.0004 19.8 0.1 0.00089 18.7 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_38 PF13936.1 gi|282165202|ref|YP_003357587.1| - 0.00081 18.8 0.1 0.0016 17.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|282165202|ref|YP_003357587.1| - 0.00088 18.9 0.0 0.0032 17.1 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|282165202|ref|YP_003357587.1| - 0.0019 18.1 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.6 gi|282165202|ref|YP_003357587.1| - 0.0025 17.5 0.2 0.005 16.5 0.2 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_23 PF13384.1 gi|282165202|ref|YP_003357587.1| - 0.0027 17.3 0.0 0.0053 16.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|282165202|ref|YP_003357587.1| - 0.0032 17.2 0.1 0.007 16.1 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RepL PF05732.6 gi|282165202|ref|YP_003357587.1| - 0.0039 16.4 1.6 0.0075 15.4 0.1 2.0 2 0 0 2 2 2 1 Firmicute plasmid replication protein (RepL) Fe_dep_repress PF01325.14 gi|282165202|ref|YP_003357587.1| - 0.005 16.7 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|282165202|ref|YP_003357587.1| - 0.006 16.2 0.1 0.011 15.3 0.1 1.4 1 0 0 1 1 1 1 MarR family ACT_4 PF13291.1 gi|282165202|ref|YP_003357587.1| - 0.013 15.8 2.6 0.14 12.5 0.1 2.6 2 1 1 3 3 2 0 ACT domain HTH_36 PF13730.1 gi|282165202|ref|YP_003357587.1| - 0.013 15.5 0.1 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|282165202|ref|YP_003357587.1| - 0.014 14.7 0.0 0.029 13.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|282165202|ref|YP_003357587.1| - 0.014 14.8 0.0 0.03 13.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 TFIIE_alpha PF02002.12 gi|282165202|ref|YP_003357587.1| - 0.015 14.8 1.1 0.022 14.2 0.1 1.7 2 0 0 2 2 1 0 TFIIE alpha subunit GntR PF00392.16 gi|282165202|ref|YP_003357587.1| - 0.019 14.4 0.0 0.062 12.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_30 PF13556.1 gi|282165202|ref|YP_003357587.1| - 0.021 14.4 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_34 PF13601.1 gi|282165202|ref|YP_003357587.1| - 0.023 14.6 0.1 0.041 13.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain GerE PF00196.14 gi|282165202|ref|YP_003357587.1| - 0.032 13.5 0.1 0.078 12.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Rrf2 PF02082.15 gi|282165202|ref|YP_003357587.1| - 0.033 14.3 0.1 0.061 13.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator SpoIIID PF12116.3 gi|282165202|ref|YP_003357587.1| - 0.041 13.8 0.1 0.13 12.2 0.0 1.9 2 0 0 2 2 1 0 Stage III sporulation protein D HTH_9 PF08221.6 gi|282165202|ref|YP_003357587.1| - 0.042 13.7 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TetR_N PF00440.18 gi|282165202|ref|YP_003357587.1| - 0.083 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_AraC PF00165.18 gi|282165202|ref|YP_003357587.1| - 0.098 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family NapD PF03927.8 gi|282165202|ref|YP_003357587.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 NapD protein HTH_27 PF13463.1 gi|282165202|ref|YP_003357587.1| - 0.12 12.6 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Terminase_5 PF06056.7 gi|282165202|ref|YP_003357587.1| - 0.13 11.7 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_26 PF13443.1 gi|282165202|ref|YP_003357587.1| - 0.14 12.3 0.7 0.63 10.2 0.1 2.4 2 1 1 3 3 2 0 Cro/C1-type HTH DNA-binding domain CBM_4_9 PF02018.12 gi|282165203|ref|YP_003357588.1| - 0.00013 21.9 0.4 0.00063 19.7 0.3 2.0 2 0 0 2 2 2 1 Carbohydrate binding domain PA-IIL PF07472.6 gi|282165204|ref|YP_003357589.1| - 0.00096 19.3 3.5 0.66 10.2 0.3 2.7 2 0 0 2 2 2 2 Fucose-binding lectin II (PA-IIL) DUF362 PF04015.7 gi|282165205|ref|YP_003357590.1| - 1.4e-31 109.6 0.0 2.7e-23 82.5 0.0 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF362) Glycos_transf_1 PF00534.15 gi|282165206|ref|YP_003357591.1| - 1.3e-17 63.7 0.0 2e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282165206|ref|YP_003357591.1| - 1.1e-13 51.4 0.0 2e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282165206|ref|YP_003357591.1| - 8.1e-11 41.9 0.0 3.1e-10 40.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|282165206|ref|YP_003357591.1| - 1.3e-09 38.3 0.0 1.9e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|282165206|ref|YP_003357591.1| - 4.4e-07 30.0 0.0 9.8e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Prenyltrans_1 PF13243.1 gi|282165207|ref|YP_003357592.1| - 1.8e-14 53.6 0.9 0.00011 22.1 0.0 3.3 1 1 2 3 3 3 3 Prenyltransferase-like Prenyltrans_2 PF13249.1 gi|282165207|ref|YP_003357592.1| - 9.8e-10 38.8 1.2 1.4e-06 28.6 0.1 2.4 2 0 0 2 2 2 2 Prenyltransferase-like Prenyltrans PF00432.16 gi|282165207|ref|YP_003357592.1| - 6.3e-07 28.8 0.2 0.00081 18.9 0.0 2.8 2 0 0 2 2 2 2 Prenyltransferase and squalene oxidase repeat A2M_comp PF07678.9 gi|282165207|ref|YP_003357592.1| - 0.0019 17.4 0.0 0.06 12.5 0.0 2.8 2 1 0 2 2 2 1 A-macroglobulin complement component Pec_lyase PF09492.5 gi|282165207|ref|YP_003357592.1| - 0.03 13.4 0.0 6.5 5.8 0.0 2.7 2 1 1 3 3 3 0 Pectic acid lyase Glycos_transf_1 PF00534.15 gi|282165208|ref|YP_003357593.1| - 2.3e-42 144.3 0.0 3.3e-42 143.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282165208|ref|YP_003357593.1| - 2.6e-17 63.2 0.0 8e-17 61.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|282165208|ref|YP_003357593.1| - 5.7e-12 45.7 0.0 1.1e-11 44.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282165208|ref|YP_003357593.1| - 2e-10 41.0 0.2 6.7e-10 39.3 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|282165208|ref|YP_003357593.1| - 3.4e-07 30.1 0.0 7.1e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|282165209|ref|YP_003357594.1| - 8.8e-32 109.8 0.0 1.4e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282165209|ref|YP_003357594.1| - 1.3e-19 70.6 0.0 3.5e-19 69.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|282165209|ref|YP_003357594.1| - 6.1e-05 23.2 0.0 0.00023 21.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Polysacc_deac_1 PF01522.16 gi|282165210|ref|YP_003357595.1| - 7e-08 32.1 0.0 2.3e-07 30.4 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.10 gi|282165210|ref|YP_003357595.1| - 0.015 14.2 0.0 0.38 9.5 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 57 Polysacc_synt PF01943.12 gi|282165211|ref|YP_003357596.1| - 1.3e-20 73.8 61.7 1.2e-17 64.0 28.4 2.0 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|282165211|ref|YP_003357596.1| - 6.3e-13 48.7 32.1 6.3e-13 48.7 22.2 2.4 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|282165211|ref|YP_003357596.1| - 3.6e-06 26.8 11.2 3.6e-06 26.8 7.7 4.8 1 1 3 4 4 4 1 Polysaccharide biosynthesis C-terminal domain FemAB PF02388.11 gi|282165212|ref|YP_003357597.1| - 0.00014 20.6 4.5 0.079 11.6 0.3 2.1 1 1 1 2 2 2 2 FemAB family Acetyltransf_6 PF13480.1 gi|282165212|ref|YP_003357597.1| - 0.025 14.5 0.0 0.1 12.5 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain UDPG_MGDP_dh_N PF03721.9 gi|282165214|ref|YP_003357599.1| - 1.1e-51 174.8 0.0 2.1e-51 173.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|282165214|ref|YP_003357599.1| - 9.9e-28 96.2 0.1 1.9e-27 95.2 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|282165214|ref|YP_003357599.1| - 3.4e-21 75.3 0.0 1.6e-20 73.1 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|282165214|ref|YP_003357599.1| - 4.2e-05 23.4 0.0 0.00023 21.0 0.0 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|282165214|ref|YP_003357599.1| - 0.00073 18.9 0.0 0.0016 17.9 0.0 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|282165214|ref|YP_003357599.1| - 0.0012 18.8 0.4 0.0078 16.1 0.0 2.6 2 1 0 2 2 2 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|282165214|ref|YP_003357599.1| - 0.009 15.7 0.1 0.21 11.3 0.0 2.9 3 1 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF2073 PF09846.4 gi|282165214|ref|YP_003357599.1| - 0.072 12.7 0.1 0.29 10.8 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2073) Methyltransf_18 PF12847.2 gi|282165214|ref|YP_003357599.1| - 0.1 13.1 0.0 0.52 10.9 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain BNR_2 PF13088.1 gi|282165215|ref|YP_003357600.1| - 7.7e-06 25.3 1.7 5.5e-05 22.5 1.2 2.3 1 1 0 1 1 1 1 BNR repeat-like domain BNR PF02012.15 gi|282165215|ref|YP_003357600.1| - 1.1e-05 24.5 14.7 0.15 12.0 0.1 4.7 4 0 0 4 4 4 3 BNR/Asp-box repeat DUF1616 PF07760.6 gi|282165216|ref|YP_003357601.1| - 1.4e-78 263.9 8.4 1.6e-78 263.7 5.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Phage_RpbA PF10789.4 gi|282165216|ref|YP_003357601.1| - 0.16 11.8 0.0 0.5 10.2 0.0 1.7 2 0 0 2 2 2 0 Phage RNA polymerase binding, RpbA Cyt_c_ox_IV PF12270.3 gi|282165216|ref|YP_003357601.1| - 0.22 11.2 5.7 0.063 13.0 1.0 2.2 2 1 1 3 3 3 0 Cytochrome c oxidase subunit IV Glycos_transf_2 PF00535.21 gi|282165217|ref|YP_003357602.1| - 1.9e-24 86.2 0.1 2.4e-24 85.8 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282165217|ref|YP_003357602.1| - 9.4e-05 22.3 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Amidase_2 PF01510.20 gi|282165217|ref|YP_003357602.1| - 0.085 12.9 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase DDE_Tnp_1_5 PF13737.1 gi|282165218|ref|YP_003357603.1| - 6.7e-19 68.1 0.0 7.9e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain AsnC_trans_reg PF01037.16 gi|282165219|ref|YP_003357604.1| - 4.8e-12 45.4 0.0 6.5e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|282165219|ref|YP_003357604.1| - 3.2e-10 39.3 0.0 5.4e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|282165219|ref|YP_003357604.1| - 2.6e-08 33.1 0.0 4.9e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|282165219|ref|YP_003357604.1| - 0.00015 21.3 0.0 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|282165219|ref|YP_003357604.1| - 0.00036 20.0 0.0 0.00064 19.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|282165219|ref|YP_003357604.1| - 0.00057 19.4 0.0 0.0013 18.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|282165219|ref|YP_003357604.1| - 0.0012 18.4 0.0 0.003 17.2 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|282165219|ref|YP_003357604.1| - 0.017 14.7 0.0 0.072 12.8 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|282165219|ref|YP_003357604.1| - 0.018 14.8 0.0 0.03 14.1 0.0 1.5 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_23 PF13384.1 gi|282165219|ref|YP_003357604.1| - 0.022 14.4 0.0 0.039 13.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|282165219|ref|YP_003357604.1| - 0.027 13.6 0.0 0.058 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.1 gi|282165219|ref|YP_003357604.1| - 0.027 14.7 0.0 0.11 12.7 0.0 2.1 2 1 0 2 2 2 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|282165219|ref|YP_003357604.1| - 0.058 13.3 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|282165219|ref|YP_003357604.1| - 0.1 12.0 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|282165219|ref|YP_003357604.1| - 0.11 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|282165220|ref|YP_003357605.1| - 4.9e-12 45.0 0.5 7.7e-12 44.4 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|282165220|ref|YP_003357605.1| - 1.2e-11 44.1 0.0 2.2e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|282165220|ref|YP_003357605.1| - 7.8e-10 38.1 0.1 1.3e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Mga PF08280.6 gi|282165220|ref|YP_003357605.1| - 1.1e-05 25.0 0.3 2.5e-05 23.9 0.1 1.8 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_20 PF12840.2 gi|282165220|ref|YP_003357605.1| - 0.00012 21.7 0.0 0.0002 21.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|282165220|ref|YP_003357605.1| - 0.00099 18.5 0.1 0.0023 17.4 0.1 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|282165220|ref|YP_003357605.1| - 0.0013 18.3 0.4 0.0041 16.7 0.0 1.9 2 1 1 3 3 2 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.1 gi|282165220|ref|YP_003357605.1| - 0.0015 18.0 0.1 0.0032 16.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|282165220|ref|YP_003357605.1| - 0.0028 17.3 0.0 0.0059 16.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|282165220|ref|YP_003357605.1| - 0.013 15.0 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|282165220|ref|YP_003357605.1| - 0.022 14.4 0.2 0.037 13.6 0.1 1.4 1 0 0 1 1 1 0 HTH domain Tn7_Tnp_TnsA_C PF08721.6 gi|282165220|ref|YP_003357605.1| - 0.04 13.9 0.1 1.5 8.8 0.0 2.3 2 1 0 2 2 2 0 TnsA endonuclease C terminal HTH_Tnp_ISL3 PF13542.1 gi|282165220|ref|YP_003357605.1| - 0.04 13.0 0.0 0.084 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 YtxH PF12732.2 gi|282165220|ref|YP_003357605.1| - 0.045 14.1 0.0 0.068 13.5 0.0 1.4 1 1 0 1 1 1 0 YtxH-like protein DUF977 PF06163.6 gi|282165220|ref|YP_003357605.1| - 0.051 13.3 0.4 0.071 12.8 0.3 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_IclR PF09339.5 gi|282165220|ref|YP_003357605.1| - 0.06 12.9 0.0 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Phage_terminase PF10668.4 gi|282165220|ref|YP_003357605.1| - 0.083 12.6 0.1 0.24 11.1 0.1 1.8 1 0 0 1 1 1 0 Phage terminase small subunit Ribosomal_S6 PF01250.12 gi|282165220|ref|YP_003357605.1| - 0.089 12.6 2.8 0.11 12.3 0.1 2.4 2 1 0 2 2 2 0 Ribosomal protein S6 HTH_12 PF08461.5 gi|282165220|ref|YP_003357605.1| - 0.11 12.1 0.7 0.36 10.6 0.2 2.1 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain DUF771 PF05595.6 gi|282165220|ref|YP_003357605.1| - 0.21 11.5 1.5 1.1 9.2 0.1 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF771) Matrilin_ccoil PF10393.4 gi|282165220|ref|YP_003357605.1| - 0.54 9.6 0.1 0.54 9.6 0.0 2.2 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin KaiC PF06745.8 gi|282165221|ref|YP_003357606.1| - 6.1e-33 113.8 0.0 2.1e-31 108.8 0.0 2.4 2 1 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|282165221|ref|YP_003357606.1| - 2.9e-09 36.6 0.0 6.7e-09 35.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|282165221|ref|YP_003357606.1| - 3.3e-07 29.6 0.7 4.1e-06 26.1 0.1 2.2 2 0 0 2 2 2 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|282165221|ref|YP_003357606.1| - 0.0001 21.8 0.0 0.0002 20.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|282165221|ref|YP_003357606.1| - 0.00053 19.6 0.3 0.0016 18.1 0.2 1.8 1 0 0 1 1 1 1 Part of AAA domain Zot PF05707.7 gi|282165221|ref|YP_003357606.1| - 0.00072 19.0 0.0 0.0013 18.2 0.0 1.4 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) GvpD PF07088.6 gi|282165221|ref|YP_003357606.1| - 0.003 15.9 0.1 0.0085 14.4 0.0 1.6 2 0 0 2 2 2 1 GvpD gas vesicle protein PAXNEB PF05625.6 gi|282165221|ref|YP_003357606.1| - 0.0039 16.0 1.8 1.3 7.7 0.6 2.2 2 0 0 2 2 2 2 PAXNEB protein AAA_22 PF13401.1 gi|282165221|ref|YP_003357606.1| - 0.0044 17.1 0.0 0.012 15.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|282165221|ref|YP_003357606.1| - 0.0066 16.4 0.1 0.014 15.4 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain UPF0020 PF01170.13 gi|282165221|ref|YP_003357606.1| - 0.012 15.1 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 AAA_10 PF12846.2 gi|282165221|ref|YP_003357606.1| - 0.017 14.6 0.1 0.031 13.7 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain DUF2075 PF09848.4 gi|282165221|ref|YP_003357606.1| - 0.026 13.4 0.1 0.038 12.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|282165221|ref|YP_003357606.1| - 0.028 14.0 0.2 0.55 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.10 gi|282165221|ref|YP_003357606.1| - 0.039 12.8 0.0 0.077 11.8 0.0 1.4 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain ResIII PF04851.10 gi|282165221|ref|YP_003357606.1| - 0.04 13.7 0.0 0.064 13.0 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|282165221|ref|YP_003357606.1| - 0.042 13.3 0.0 0.077 12.4 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase PhoH PF02562.11 gi|282165221|ref|YP_003357606.1| - 0.055 12.6 0.1 0.18 11.0 0.1 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA PF00004.24 gi|282165221|ref|YP_003357606.1| - 0.085 13.0 0.1 0.12 12.5 0.1 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA12 PF10443.4 gi|282165221|ref|YP_003357606.1| - 0.091 11.2 0.0 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein T2SE PF00437.15 gi|282165221|ref|YP_003357606.1| - 0.12 11.2 0.1 0.2 10.5 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein TraB PF01963.12 gi|282165222|ref|YP_003357607.1| - 1.4e-43 149.2 0.2 2.2e-43 148.5 0.2 1.3 1 0 0 1 1 1 1 TraB family LexA_DNA_bind PF01726.11 gi|282165222|ref|YP_003357607.1| - 0.064 12.8 0.0 0.39 10.3 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain CBS PF00571.23 gi|282165223|ref|YP_003357608.1| - 7.1e-30 102.5 4.7 8.6e-15 54.2 0.1 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|282165223|ref|YP_003357608.1| - 1.9e-16 59.6 16.3 3.9e-13 48.8 11.3 2.6 1 1 0 1 1 1 1 Peptidase family M50 PRC PF05239.11 gi|282165224|ref|YP_003357609.1| - 4.7e-14 52.0 0.7 5.5e-14 51.7 0.5 1.1 1 0 0 1 1 1 1 PRC-barrel domain MFS_1 PF07690.11 gi|282165225|ref|YP_003357610.1| - 7.3e-51 172.9 45.9 5e-28 97.8 19.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|282165225|ref|YP_003357610.1| - 3.5e-07 28.9 34.3 3.5e-07 28.9 23.8 2.4 1 1 1 2 2 2 1 MFS/sugar transport protein MFS_3 PF05977.8 gi|282165225|ref|YP_003357610.1| - 7.7e-07 27.5 15.6 1.7e-06 26.4 10.7 1.5 1 1 0 1 1 1 1 Transmembrane secretion effector LacY_symp PF01306.14 gi|282165225|ref|YP_003357610.1| - 0.00013 20.6 34.5 0.028 12.9 7.5 3.2 2 2 0 2 2 2 2 LacY proton/sugar symporter MFS_1_like PF12832.2 gi|282165225|ref|YP_003357610.1| - 0.00014 21.5 2.8 0.00014 21.5 1.9 3.4 3 0 0 3 3 3 1 MFS_1 like family Thg1C PF14413.1 gi|282165226|ref|YP_003357611.1| - 2.8e-31 107.6 0.1 3.7e-31 107.3 0.1 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain Thg1 PF04446.7 gi|282165226|ref|YP_003357611.1| - 2.7e-27 95.0 0.0 3.9e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Mac PF12464.3 gi|282165227|ref|YP_003357612.1| - 2.2e-21 75.6 0.5 3.5e-21 74.9 0.2 1.5 2 0 0 2 2 2 1 Maltose acetyltransferase Hexapep PF00132.19 gi|282165227|ref|YP_003357612.1| - 1.9e-13 49.2 13.3 4.2e-11 41.8 7.0 2.6 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|282165227|ref|YP_003357612.1| - 3.7e-09 35.9 6.3 3.7e-09 35.9 4.4 2.3 2 0 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase SAICAR_synt PF01259.13 gi|282165228|ref|YP_003357613.1| - 2.9e-55 187.0 1.2 3.3e-55 186.9 0.8 1.0 1 0 0 1 1 1 1 SAICAR synthetase ACT_7 PF13840.1 gi|282165228|ref|YP_003357613.1| - 0.019 14.4 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 ACT domain cobW PF02492.14 gi|282165229|ref|YP_003357614.1| - 5.9e-37 126.8 0.3 7.3e-37 126.5 0.2 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|282165229|ref|YP_003357614.1| - 4.3e-08 32.2 0.6 0.0049 15.6 0.0 2.1 2 0 0 2 2 2 2 ArgK protein MobB PF03205.9 gi|282165229|ref|YP_003357614.1| - 4e-05 23.3 0.1 9.6e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|282165229|ref|YP_003357614.1| - 0.0002 20.8 1.5 0.02 14.4 0.1 2.2 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation SRP54 PF00448.17 gi|282165229|ref|YP_003357614.1| - 0.00043 19.7 0.0 0.00096 18.6 0.0 1.7 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|282165229|ref|YP_003357614.1| - 0.0015 18.5 0.0 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain TrwB_AAD_bind PF10412.4 gi|282165229|ref|YP_003357614.1| - 0.0091 14.6 0.1 0.013 14.1 0.1 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain LpxK PF02606.9 gi|282165229|ref|YP_003357614.1| - 0.022 13.7 0.0 0.031 13.2 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase GTP_EFTU PF00009.22 gi|282165229|ref|YP_003357614.1| - 0.037 13.4 1.0 4.6 6.6 0.1 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain NTPase_1 PF03266.10 gi|282165229|ref|YP_003357614.1| - 0.048 13.3 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 NTPase ATP_bind_1 PF03029.12 gi|282165229|ref|YP_003357614.1| - 0.053 13.0 0.5 0.16 11.4 0.1 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Mg_chelatase PF01078.16 gi|282165229|ref|YP_003357614.1| - 0.09 11.9 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|282165229|ref|YP_003357614.1| - 0.12 11.9 0.2 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|282165229|ref|YP_003357614.1| - 0.13 12.2 0.1 0.26 11.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain Fer4_7 PF12838.2 gi|282165230|ref|YP_003357615.1| - 2.6e-09 37.3 7.7 4.4e-09 36.5 5.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282165230|ref|YP_003357615.1| - 9e-09 35.9 5.3 1.7e-08 35.1 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|282165230|ref|YP_003357615.1| - 6.6e-07 29.0 7.3 1.3e-06 28.1 5.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282165230|ref|YP_003357615.1| - 1.6e-06 27.6 10.6 0.0016 18.2 3.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|282165230|ref|YP_003357615.1| - 1.3e-05 25.3 8.1 2.5e-05 24.4 5.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282165230|ref|YP_003357615.1| - 9.7e-05 21.8 12.3 0.0023 17.4 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|282165230|ref|YP_003357615.1| - 0.00042 20.4 10.2 0.0074 16.5 2.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|282165230|ref|YP_003357615.1| - 0.00042 20.2 6.1 0.0097 15.9 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|282165230|ref|YP_003357615.1| - 0.0038 17.6 13.7 0.38 11.4 0.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|282165230|ref|YP_003357615.1| - 0.0048 17.2 7.2 0.015 15.6 5.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282165230|ref|YP_003357615.1| - 0.012 15.4 4.0 0.21 11.4 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282165230|ref|YP_003357615.1| - 0.039 13.8 13.3 0.05 13.5 2.8 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Dehalogenase PF13486.1 gi|282165230|ref|YP_003357615.1| - 0.042 13.3 0.0 0.055 12.9 0.0 1.2 1 0 0 1 1 1 0 Reductive dehalogenase subunit Fer4_18 PF13746.1 gi|282165230|ref|YP_003357615.1| - 0.52 10.7 14.0 0.82 10.1 3.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Hemerythrin PF01814.18 gi|282165231|ref|YP_003357616.1| - 2.7e-15 56.6 3.8 1.1e-07 32.0 0.2 2.2 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain GSDH PF07995.6 gi|282165233|ref|YP_003357618.1| - 8e-29 100.7 0.0 3.4e-28 98.6 0.0 1.8 1 1 0 1 1 1 1 Glucose / Sorbosone dehydrogenase NHL PF01436.16 gi|282165233|ref|YP_003357618.1| - 0.0001 22.0 2.6 0.059 13.3 0.0 4.2 5 0 0 5 5 5 2 NHL repeat SGL PF08450.7 gi|282165233|ref|YP_003357618.1| - 0.015 14.7 0.1 0.25 10.7 0.0 2.8 2 1 0 2 2 2 0 SMP-30/Gluconolaconase/LRE-like region Gmad1 PF10647.4 gi|282165233|ref|YP_003357618.1| - 0.046 13.1 0.1 1.5 8.1 0.0 2.7 3 0 0 3 3 3 0 Lipoprotein LpqB beta-propeller domain Tachylectin PF14517.1 gi|282165233|ref|YP_003357618.1| - 0.064 12.5 0.5 2.2 7.5 0.0 2.9 2 1 1 3 3 3 0 Tachylectin PQQ_3 PF13570.1 gi|282165233|ref|YP_003357618.1| - 2.1 8.7 5.9 2.5 8.4 0.1 3.5 4 0 0 4 4 4 0 PQQ-like domain 2-ph_phosp PF04029.9 gi|282165234|ref|YP_003357619.1| - 2.3e-46 157.6 0.0 2.9e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase T2SF PF00482.18 gi|282165240|ref|YP_003357625.1| - 4.5e-12 45.9 0.9 4.5e-12 45.9 0.6 2.4 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F PufQ PF05398.6 gi|282165240|ref|YP_003357625.1| - 0.022 14.7 0.1 0.065 13.2 0.1 1.8 1 0 0 1 1 1 0 PufQ cytochrome subunit DUF2061 PF09834.4 gi|282165240|ref|YP_003357625.1| - 1.3 9.3 6.6 0.17 12.0 0.9 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2061) T2SF PF00482.18 gi|282165241|ref|YP_003357626.1| - 0.00022 21.1 0.5 0.00022 21.1 0.3 1.9 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF872 PF05915.7 gi|282165241|ref|YP_003357626.1| - 0.031 14.1 0.3 0.74 9.6 0.0 2.2 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF3953 PF13129.1 gi|282165241|ref|YP_003357626.1| - 5.5 6.6 7.9 0.56 9.8 0.5 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3953) T2SE PF00437.15 gi|282165242|ref|YP_003357627.1| - 5.9e-40 136.8 0.0 8.7e-40 136.3 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein Pox_A32 PF04665.7 gi|282165242|ref|YP_003357627.1| - 0.18 11.0 0.0 0.34 10.1 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_19 PF13245.1 gi|282165242|ref|YP_003357627.1| - 0.33 10.7 3.8 4.5 7.0 0.1 2.8 1 1 1 2 2 2 0 Part of AAA domain Glyco_trans_1_4 PF13692.1 gi|282165243|ref|YP_003357628.1| - 0.05 13.7 0.0 1.7 8.7 0.0 2.5 2 1 0 2 2 2 0 Glycosyl transferases group 1 GCHY-1 PF02649.9 gi|282165244|ref|YP_003357629.1| - 3.5e-89 298.7 0.4 4e-89 298.5 0.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 SnoaL PF07366.7 gi|282165244|ref|YP_003357629.1| - 0.066 12.7 0.1 0.37 10.3 0.0 2.3 2 0 0 2 2 2 0 SnoaL-like polyketide cyclase Snapin_Pallidin PF14712.1 gi|282165245|ref|YP_003357630.1| - 0.011 16.0 0.2 0.021 15.1 0.1 1.4 1 0 0 1 1 1 0 Snapin/Pallidin MtrB PF05440.7 gi|282165245|ref|YP_003357630.1| - 0.073 13.1 1.2 3.8 7.6 0.2 2.2 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF948 PF06103.6 gi|282165245|ref|YP_003357630.1| - 0.097 12.5 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) RPW8 PF05659.6 gi|282165245|ref|YP_003357630.1| - 0.12 11.9 0.5 0.25 10.8 0.2 1.6 1 1 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 SeleniumBinding PF11524.3 gi|282165245|ref|YP_003357630.1| - 0.41 10.8 1.6 1.6 8.8 0.1 2.3 1 1 0 2 2 2 0 Selenium binding protein PPC PF04151.10 gi|282165248|ref|YP_003357633.1| - 0.0096 16.8 0.0 0.017 16.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial pre-peptidase C-terminal domain ESSS PF10183.4 gi|282165248|ref|YP_003357633.1| - 6.7 7.1 6.0 15 6.0 0.1 2.9 3 0 0 3 3 3 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) eRF1_1 PF03463.10 gi|282165249|ref|YP_003357634.1| - 7.6e-31 106.4 0.1 1.3e-30 105.6 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|282165249|ref|YP_003357634.1| - 1.9e-24 86.1 0.4 5.9e-24 84.5 0.3 1.9 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|282165249|ref|YP_003357634.1| - 5e-24 85.1 0.5 7.7e-24 84.5 0.3 1.3 1 0 0 1 1 1 1 eRF1 domain 2 DUF1537 PF07005.6 gi|282165249|ref|YP_003357634.1| - 0.0087 15.7 0.5 0.49 10.0 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF1537 FbpA PF05833.6 gi|282165250|ref|YP_003357635.1| - 5.4e-101 338.3 3.6 6.9e-101 338.0 2.5 1.0 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|282165250|ref|YP_003357635.1| - 1.1e-28 98.9 0.0 2.3e-28 97.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF814) H2TH PF06831.9 gi|282165250|ref|YP_003357635.1| - 0.003 17.2 0.0 0.0085 15.8 0.0 1.7 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain DUF3441 PF11923.3 gi|282165250|ref|YP_003357635.1| - 0.017 14.7 0.0 0.051 13.1 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3441) MerR-DNA-bind PF09278.6 gi|282165250|ref|YP_003357635.1| - 0.025 14.9 0.6 0.88 10.0 0.0 2.6 2 0 0 2 2 2 0 MerR, DNA binding Response_reg PF00072.19 gi|282165251|ref|YP_003357636.1| - 3.7e-30 104.2 0.8 4.2e-30 104.0 0.6 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Yqai PF09466.5 gi|282165251|ref|YP_003357636.1| - 0.02 14.9 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 Hypothetical protein Yqai DUF307 PF03733.8 gi|282165252|ref|YP_003357637.1| - 0.81 10.1 3.8 1.5 9.2 2.6 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF307) TPPK_C PF12555.3 gi|282165252|ref|YP_003357637.1| - 1.1 9.0 5.7 1.4 8.7 0.8 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal DUF4027 PF13219.1 gi|282165252|ref|YP_003357637.1| - 3 7.3 5.3 8.3 5.9 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4027) PetG PF02529.10 gi|282165252|ref|YP_003357637.1| - 9 5.9 8.7 1.4 8.5 2.1 2.2 1 1 1 2 2 2 0 Cytochrome B6-F complex subunit 5 IlvN PF07991.7 gi|282165255|ref|YP_003357640.1| - 1.5e-74 248.8 1.5 1.9e-74 248.4 1.1 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|282165255|ref|YP_003357640.1| - 1.1e-56 190.7 0.1 1.6e-56 190.2 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|282165255|ref|YP_003357640.1| - 3.4e-06 27.0 0.2 5.8e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|282165255|ref|YP_003357640.1| - 2.3e-05 23.6 0.0 3.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|282165255|ref|YP_003357640.1| - 0.00021 21.1 0.3 0.0004 20.2 0.2 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|282165255|ref|YP_003357640.1| - 0.00023 21.5 0.1 0.00046 20.5 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Oxidored_nitro PF00148.14 gi|282165255|ref|YP_003357640.1| - 0.0058 15.3 0.0 0.011 14.4 0.0 1.4 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|282165255|ref|YP_003357640.1| - 0.073 12.7 0.3 1.7 8.3 0.1 2.5 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HTH_10 PF04967.7 gi|282165256|ref|YP_003357641.1| - 4.2e-24 83.8 0.1 7.2e-24 83.1 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|282165256|ref|YP_003357641.1| - 0.0018 17.6 0.1 0.0035 16.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|282165256|ref|YP_003357641.1| - 0.0048 17.2 0.0 0.0099 16.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|282165256|ref|YP_003357641.1| - 0.014 15.3 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_17 PF12728.2 gi|282165256|ref|YP_003357641.1| - 0.021 15.0 0.2 0.087 13.0 0.0 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|282165256|ref|YP_003357641.1| - 0.031 13.7 0.5 0.078 12.4 0.4 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|282165256|ref|YP_003357641.1| - 0.048 13.3 0.0 0.097 12.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family NUMOD1 PF07453.8 gi|282165256|ref|YP_003357641.1| - 0.052 13.4 0.2 0.11 12.3 0.2 1.5 1 0 0 1 1 1 0 NUMOD1 domain MarR_2 PF12802.2 gi|282165256|ref|YP_003357641.1| - 0.055 13.1 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_Tnp_ISL3 PF13542.1 gi|282165256|ref|YP_003357641.1| - 0.069 12.3 0.0 0.15 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.1 gi|282165256|ref|YP_003357641.1| - 0.099 12.3 0.0 0.27 10.9 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Arginase PF00491.16 gi|282165257|ref|YP_003357642.1| - 3.9e-72 242.8 0.0 4.6e-72 242.6 0.0 1.0 1 0 0 1 1 1 1 Arginase family HD PF01966.17 gi|282165258|ref|YP_003357643.1| - 7.3e-11 42.1 0.2 1.5e-10 41.1 0.1 1.6 1 0 0 1 1 1 1 HD domain HD_assoc PF13286.1 gi|282165258|ref|YP_003357643.1| - 3.7e-10 39.9 0.0 8e-10 38.8 0.0 1.6 1 0 0 1 1 1 1 Phosphohydrolase-associated domain Thia_YuaJ PF09515.5 gi|282165259|ref|YP_003357644.1| - 0.0067 16.1 0.1 0.0074 16.0 0.1 1.2 1 0 0 1 1 1 1 Thiamine transporter protein (Thia_YuaJ) DUF650 PF04894.7 gi|282165260|ref|YP_003357645.1| - 1.8e-93 312.9 0.0 2.3e-93 312.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|282165260|ref|YP_003357645.1| - 1.9e-31 107.9 0.0 3e-31 107.2 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) HupF_HypC PF01455.13 gi|282165262|ref|YP_003357647.1| - 1.9e-22 78.9 0.4 2.5e-22 78.6 0.2 1.2 1 0 0 1 1 1 1 HupF/HypC family HypA PF01155.14 gi|282165263|ref|YP_003357648.1| - 2.3e-32 111.0 0.4 2.5e-32 110.8 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|282165263|ref|YP_003357648.1| - 0.003 16.9 6.6 0.0071 15.7 4.6 1.7 1 0 0 1 1 1 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|282165263|ref|YP_003357648.1| - 0.0073 15.9 1.6 0.13 11.9 0.0 2.3 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit UPF0547 PF10571.4 gi|282165263|ref|YP_003357648.1| - 0.01 15.4 1.8 0.98 9.1 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|282165263|ref|YP_003357648.1| - 0.011 15.3 1.1 0.02 14.5 0.8 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|282165263|ref|YP_003357648.1| - 0.013 14.7 6.4 0.18 11.0 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|282165263|ref|YP_003357648.1| - 0.015 15.1 3.9 0.058 13.2 2.9 1.8 1 1 0 1 1 1 0 Double zinc ribbon CTV_P23 PF04808.7 gi|282165263|ref|YP_003357648.1| - 0.031 13.6 0.0 0.032 13.5 0.0 1.1 1 0 0 1 1 1 0 Citrus tristeza virus (CTV) P23 protein zinc_ribbon_5 PF13719.1 gi|282165263|ref|YP_003357648.1| - 0.099 12.2 3.2 2.6 7.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|282165263|ref|YP_003357648.1| - 0.12 12.0 3.3 2.4 7.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|282165263|ref|YP_003357648.1| - 0.14 11.7 5.3 1.9 8.0 0.4 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-NADH-PPase PF09297.6 gi|282165263|ref|YP_003357648.1| - 0.18 11.3 4.9 59 3.2 0.0 3.0 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.1 gi|282165263|ref|YP_003357648.1| - 0.56 9.4 3.6 1.9 7.7 0.2 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-ISL3 PF14690.1 gi|282165263|ref|YP_003357648.1| - 0.68 10.0 5.1 6.8 6.8 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.2 gi|282165263|ref|YP_003357648.1| - 1 9.3 4.2 5 7.1 0.5 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF1610 PF07754.6 gi|282165263|ref|YP_003357648.1| - 1.1 9.4 9.9 6 7.0 1.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) CpXC PF14353.1 gi|282165263|ref|YP_003357648.1| - 1.2 9.1 4.4 9.2 6.2 0.3 2.5 1 1 2 3 3 3 0 CpXC protein zf-HYPF PF07503.7 gi|282165263|ref|YP_003357648.1| - 1.7 8.1 5.9 3.8 7.0 0.5 2.3 2 0 0 2 2 2 0 HypF finger Ogr_Delta PF04606.7 gi|282165263|ref|YP_003357648.1| - 3.8 7.2 5.6 17 5.1 0.8 2.4 1 1 2 3 3 3 0 Ogr/Delta-like zinc finger Zn-ribbon_8 PF09723.5 gi|282165263|ref|YP_003357648.1| - 9.3 6.2 7.7 29 4.7 0.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain AIRS_C PF02769.17 gi|282165264|ref|YP_003357649.1| - 2.2e-26 92.7 1.9 3.2e-26 92.1 1.3 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|282165264|ref|YP_003357649.1| - 4.7e-16 58.8 0.1 1.1e-15 57.6 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF46 PF01864.12 gi|282165265|ref|YP_003357650.1| - 2.7e-50 170.6 7.3 3e-50 170.5 5.0 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|282165265|ref|YP_003357650.1| - 1.3e-07 31.5 0.7 1.3e-07 31.5 0.5 2.2 1 1 1 2 2 2 1 Cytidylyltransferase family Reticulon PF02453.12 gi|282165265|ref|YP_003357650.1| - 0.97 9.0 7.6 1.3 8.5 0.7 2.2 2 0 0 2 2 2 0 Reticulon Pribosyltran PF00156.22 gi|282165266|ref|YP_003357651.1| - 2.1e-07 30.6 2.1 7.1e-07 28.9 1.5 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain GARS_A PF01071.14 gi|282165267|ref|YP_003357652.1| - 8.9e-56 188.5 0.6 1.2e-55 188.0 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|282165267|ref|YP_003357652.1| - 2.5e-31 108.0 0.0 5.1e-31 107.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|282165267|ref|YP_003357652.1| - 5.6e-20 71.3 0.1 1.6e-19 69.8 0.0 1.8 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|282165267|ref|YP_003357652.1| - 1.7e-15 57.2 0.0 5.7e-15 55.5 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|282165267|ref|YP_003357652.1| - 0.0003 20.6 0.0 0.00072 19.4 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain Pyr_redox_2 PF07992.9 gi|282165268|ref|YP_003357653.1| - 4.3e-30 105.1 4.3 2.5e-15 56.8 0.0 3.8 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|282165268|ref|YP_003357653.1| - 2.9e-22 78.8 0.2 3.9e-17 62.4 0.0 3.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|282165268|ref|YP_003357653.1| - 4.5e-16 58.7 1.5 0.00027 19.9 0.1 4.2 3 1 1 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_dim PF02852.17 gi|282165268|ref|YP_003357653.1| - 3.2e-15 56.1 0.0 6.2e-15 55.1 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|282165268|ref|YP_003357653.1| - 4.7e-11 43.1 0.0 1.1e-05 25.6 0.0 3.5 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|282165268|ref|YP_003357653.1| - 9.4e-10 37.9 0.0 0.00041 19.3 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.9 gi|282165268|ref|YP_003357653.1| - 1.1e-08 33.9 0.7 0.23 9.9 0.0 4.6 4 1 1 5 5 5 3 HI0933-like protein NAD_binding_9 PF13454.1 gi|282165268|ref|YP_003357653.1| - 4.1e-06 26.6 2.7 0.23 11.2 0.0 4.1 3 1 1 4 4 4 2 FAD-NAD(P)-binding Thi4 PF01946.12 gi|282165268|ref|YP_003357653.1| - 7.7e-06 25.1 0.4 0.037 13.1 0.0 3.3 3 0 0 3 3 3 2 Thi4 family Lycopene_cycl PF05834.7 gi|282165268|ref|YP_003357653.1| - 3.3e-05 22.9 0.1 0.13 11.1 0.0 3.1 3 0 0 3 3 3 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|282165268|ref|YP_003357653.1| - 9e-05 22.4 0.0 0.12 12.4 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|282165268|ref|YP_003357653.1| - 0.00043 19.4 0.2 0.28 10.2 0.0 2.3 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.14 gi|282165268|ref|YP_003357653.1| - 0.00062 18.9 0.3 0.011 14.8 0.0 2.5 3 0 0 3 3 3 1 FAD binding domain Trp_halogenase PF04820.9 gi|282165268|ref|YP_003357653.1| - 0.0024 16.5 0.2 1.3 7.5 0.0 3.0 3 0 0 3 3 3 1 Tryptophan halogenase K_oxygenase PF13434.1 gi|282165268|ref|YP_003357653.1| - 0.0045 15.9 0.0 0.096 11.5 0.0 2.3 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|282165268|ref|YP_003357653.1| - 0.01 16.0 0.1 0.4 10.9 0.0 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|282165268|ref|YP_003357653.1| - 0.04 13.9 0.1 0.27 11.2 0.1 2.1 2 0 0 2 2 2 0 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|282165268|ref|YP_003357653.1| - 0.063 12.6 0.0 3.1 7.1 0.0 2.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.17 gi|282165268|ref|YP_003357653.1| - 0.074 11.9 2.7 4.6 6.0 0.0 3.8 3 1 1 4 4 4 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|282165268|ref|YP_003357653.1| - 0.084 12.5 0.2 0.33 10.5 0.0 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HTH_IclR PF09339.5 gi|282165269|ref|YP_003357654.1| - 0.00018 20.9 0.0 0.00028 20.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|282165269|ref|YP_003357654.1| - 0.00075 18.8 0.1 0.0012 18.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.7 gi|282165269|ref|YP_003357654.1| - 0.00088 19.3 0.0 0.0014 18.6 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein TrmB PF01978.14 gi|282165269|ref|YP_003357654.1| - 0.0033 17.0 0.3 0.0046 16.6 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|282165269|ref|YP_003357654.1| - 0.0033 17.0 0.1 0.0053 16.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|282165269|ref|YP_003357654.1| - 0.0091 15.7 0.1 0.017 14.9 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|282165269|ref|YP_003357654.1| - 0.0099 15.5 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 MarR family MotA_activ PF09114.5 gi|282165269|ref|YP_003357654.1| - 0.021 14.5 0.0 0.029 14.1 0.0 1.3 1 1 0 1 1 1 0 Transcription factor MotA, activation domain HTH_27 PF13463.1 gi|282165269|ref|YP_003357654.1| - 0.023 14.9 0.0 0.032 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|282165269|ref|YP_003357654.1| - 0.039 13.6 0.1 0.097 12.4 0.0 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DUF2250 PF10007.4 gi|282165269|ref|YP_003357654.1| - 0.051 13.4 0.1 0.073 12.9 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|282165269|ref|YP_003357654.1| - 0.069 13.2 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator EPSP_synthase PF00275.15 gi|282165270|ref|YP_003357655.1| - 9.8e-112 373.4 0.1 1.1e-111 373.2 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Chorismate_synt PF01264.16 gi|282165271|ref|YP_003357656.1| - 5.1e-149 495.4 1.0 5.8e-149 495.2 0.7 1.0 1 0 0 1 1 1 1 Chorismate synthase TPR_12 PF13424.1 gi|282165272|ref|YP_003357657.1| - 4.7e-14 52.0 9.7 4.2e-06 26.6 0.6 4.7 3 1 2 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282165272|ref|YP_003357657.1| - 1.5e-13 49.5 16.7 0.025 14.4 0.2 7.7 7 1 1 8 8 8 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|282165272|ref|YP_003357657.1| - 1.8e-11 43.5 8.0 0.001 18.6 0.4 4.9 4 1 0 4 4 4 3 TPR repeat TPR_1 PF00515.23 gi|282165272|ref|YP_003357657.1| - 7.6e-09 34.8 9.2 0.31 10.7 0.1 6.7 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282165272|ref|YP_003357657.1| - 8.6e-09 35.8 10.7 0.00014 22.4 0.4 5.3 5 1 1 6 6 5 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282165272|ref|YP_003357657.1| - 4.9e-07 29.0 8.8 0.9 9.4 0.0 6.3 6 1 1 7 7 7 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282165272|ref|YP_003357657.1| - 1.1e-06 28.8 2.6 0.22 11.8 0.1 4.5 2 1 3 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282165272|ref|YP_003357657.1| - 2.5e-06 27.6 11.3 0.15 12.7 0.9 6.9 4 2 3 7 7 7 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282165272|ref|YP_003357657.1| - 6.2e-06 26.3 4.7 51 4.6 0.0 8.1 8 1 1 9 9 9 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282165272|ref|YP_003357657.1| - 0.00025 20.5 7.2 7.9 6.5 0.0 6.9 6 2 0 7 7 7 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|282165272|ref|YP_003357657.1| - 0.0007 19.6 0.6 0.019 15.1 0.0 3.0 3 0 0 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_21 PF09976.4 gi|282165272|ref|YP_003357657.1| - 0.0033 17.3 0.5 1.3 8.9 0.0 2.9 1 1 0 2 2 2 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|282165272|ref|YP_003357657.1| - 0.024 15.0 0.6 35 5.2 0.1 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282165272|ref|YP_003357657.1| - 0.057 13.3 10.2 3.9 7.5 0.0 5.7 6 0 0 6 6 6 0 Tetratricopeptide repeat HAD_2 PF13419.1 gi|282165273|ref|YP_003357658.1| - 6.8e-23 81.7 0.0 1e-22 81.2 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|282165273|ref|YP_003357658.1| - 2.1e-14 54.4 0.7 3.7e-14 53.6 0.5 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|282165273|ref|YP_003357658.1| - 2.6e-05 24.4 0.0 3.2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|282165273|ref|YP_003357658.1| - 2.8e-05 23.9 0.1 0.00022 21.0 0.1 2.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|282165273|ref|YP_003357658.1| - 0.0068 16.0 0.3 0.02 14.5 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like UxaC PF02614.9 gi|282165273|ref|YP_003357658.1| - 0.021 13.4 0.0 0.026 13.1 0.0 1.1 1 0 0 1 1 1 0 Glucuronate isomerase Hydrolase_3 PF08282.7 gi|282165273|ref|YP_003357658.1| - 0.047 13.2 0.0 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF705 PF05152.7 gi|282165273|ref|YP_003357658.1| - 0.11 11.5 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF705) ILVD_EDD PF00920.16 gi|282165274|ref|YP_003357659.1| - 3.6e-213 708.7 3.4 4e-213 708.5 2.3 1.0 1 0 0 1 1 1 1 Dehydratase family Response_reg PF00072.19 gi|282165275|ref|YP_003357660.1| - 4.7e-13 49.1 0.0 5e-13 49.0 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain MarC PF01914.12 gi|282165276|ref|YP_003357661.1| - 3.9e-57 192.6 16.6 4.4e-57 192.4 11.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein LysE PF01810.13 gi|282165276|ref|YP_003357661.1| - 0.00091 18.5 7.9 0.0013 18.0 5.4 1.4 1 1 0 1 1 1 1 LysE type translocator GtrA PF04138.9 gi|282165276|ref|YP_003357661.1| - 0.89 9.5 10.2 0.073 13.0 0.4 2.2 2 0 0 2 2 2 0 GtrA-like protein DUF3784 PF12650.2 gi|282165276|ref|YP_003357661.1| - 2.9 7.9 11.5 5.6 6.9 0.1 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF3784) TctB PF07331.6 gi|282165276|ref|YP_003357661.1| - 8.9 5.9 19.9 2.1 7.9 2.4 3.0 2 1 1 3 3 3 0 Tripartite tricarboxylate transporter TctB family DUF2111 PF09884.4 gi|282165277|ref|YP_003357662.1| - 2.9e-31 107.1 2.1 3.6e-31 106.8 1.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) ThiS PF02597.15 gi|282165278|ref|YP_003357663.1| - 1.1e-13 51.4 0.0 1.2e-13 51.2 0.0 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|282165278|ref|YP_003357663.1| - 0.05 13.1 0.0 0.097 12.2 0.0 1.4 1 0 0 1 1 1 0 Mut7-C ubiquitin TGS PF02824.16 gi|282165278|ref|YP_003357663.1| - 0.073 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 TGS domain Rib_5-P_isom_A PF06026.9 gi|282165279|ref|YP_003357664.1| - 2.2e-54 183.3 0.0 2.7e-54 183.1 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|282165279|ref|YP_003357664.1| - 8.8e-05 22.2 0.2 0.00044 19.9 0.0 2.0 2 0 0 2 2 2 1 DeoR C terminal sensor domain AA_permease_2 PF13520.1 gi|282165280|ref|YP_003357665.1| - 2.8e-54 184.2 50.8 3.3e-54 184.0 35.2 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|282165280|ref|YP_003357665.1| - 7.4e-37 126.7 46.7 9.5e-37 126.4 32.4 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|282165280|ref|YP_003357665.1| - 5.6e-09 35.7 6.7 5.6e-09 35.7 4.7 3.2 2 0 0 2 2 2 1 C-terminus of AA_permease POR PF01558.13 gi|282165281|ref|YP_003357666.1| - 1e-40 139.4 0.2 1.2e-40 139.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|282165282|ref|YP_003357667.1| - 6.3e-15 54.0 20.1 1.1e-07 31.1 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282165282|ref|YP_003357667.1| - 9.8e-12 44.5 14.5 1.2e-11 44.2 10.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282165282|ref|YP_003357667.1| - 2.3e-11 43.9 28.0 2.2e-08 34.3 12.1 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282165282|ref|YP_003357667.1| - 1.1e-09 37.6 17.2 3.4e-05 23.5 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282165282|ref|YP_003357667.1| - 1.4e-09 37.5 30.8 1.8e-07 30.8 12.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282165282|ref|YP_003357667.1| - 2.5e-09 36.5 17.1 2.9e-05 23.7 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282165282|ref|YP_003357667.1| - 1.3e-07 32.2 17.5 7.1e-05 23.4 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|282165282|ref|YP_003357667.1| - 5e-07 29.8 19.4 9.9e-07 28.9 13.4 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282165282|ref|YP_003357667.1| - 1.9e-05 24.5 19.2 0.00014 21.8 2.9 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|282165282|ref|YP_003357667.1| - 6.5e-05 23.4 13.7 0.031 14.8 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|282165282|ref|YP_003357667.1| - 0.00017 21.9 19.1 0.065 13.8 4.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|282165282|ref|YP_003357667.1| - 0.00028 20.8 17.0 0.0011 18.9 12.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282165282|ref|YP_003357667.1| - 0.0014 18.9 2.8 0.0014 18.9 1.9 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282165282|ref|YP_003357667.1| - 0.005 17.1 16.4 0.035 14.4 1.9 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|282165282|ref|YP_003357667.1| - 0.09 12.6 9.4 0.23 11.3 6.4 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282165282|ref|YP_003357667.1| - 0.14 12.5 15.4 0.42 11.0 2.5 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain POR_N PF01855.14 gi|282165283|ref|YP_003357668.1| - 3.1e-71 239.5 1.6 4e-71 239.1 1.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|282165283|ref|YP_003357668.1| - 2.6e-07 30.6 0.2 5.5e-07 29.5 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|282165284|ref|YP_003357669.1| - 2.5e-27 95.3 0.1 3.8e-27 94.7 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IMP_cyclohyd PF07826.6 gi|282165285|ref|YP_003357670.1| - 2e-68 229.7 0.1 2.4e-68 229.4 0.1 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein HATPase_c PF02518.21 gi|282165286|ref|YP_003357671.1| - 6e-30 103.2 0.0 1.5e-29 101.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|282165286|ref|YP_003357671.1| - 4.6e-20 72.6 0.1 4.1e-15 56.5 0.0 2.5 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|282165286|ref|YP_003357671.1| - 8.1e-19 68.0 0.1 1.5e-11 44.4 0.0 2.7 3 0 0 3 3 3 2 GAF domain GAF PF01590.21 gi|282165286|ref|YP_003357671.1| - 6.2e-14 52.3 0.1 1.2e-09 38.4 0.0 2.4 2 0 0 2 2 2 2 GAF domain HisKA PF00512.20 gi|282165286|ref|YP_003357671.1| - 8.8e-13 48.0 0.1 2.2e-12 46.7 0.0 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain DUF2328 PF10090.4 gi|282165286|ref|YP_003357671.1| - 0.003 16.7 0.0 0.0051 16.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2328) Allexi_40kDa PF05549.6 gi|282165286|ref|YP_003357671.1| - 0.037 13.3 0.0 0.13 11.5 0.0 1.8 2 0 0 2 2 2 0 Allexivirus 40kDa protein TFIIB PF00382.14 gi|282165287|ref|YP_003357672.1| - 2e-45 152.4 2.5 8e-23 80.0 0.2 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|282165287|ref|YP_003357672.1| - 1.4e-18 65.8 1.7 3.1e-18 64.8 1.2 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|282165287|ref|YP_003357672.1| - 2.2e-05 23.6 0.6 0.022 14.0 0.1 3.4 2 1 0 2 2 2 2 Sigma-70, region 4 Ribosomal_S27e PF01667.12 gi|282165287|ref|YP_003357672.1| - 0.0028 17.1 0.3 0.0062 16.0 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.6 gi|282165287|ref|YP_003357672.1| - 0.0031 17.1 0.5 0.0077 15.8 0.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|282165287|ref|YP_003357672.1| - 0.0052 15.9 0.2 0.014 14.5 0.1 1.7 1 0 0 1 1 1 1 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|282165287|ref|YP_003357672.1| - 0.015 14.7 1.1 0.043 13.2 0.7 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|282165287|ref|YP_003357672.1| - 0.028 14.7 0.3 0.077 13.3 0.2 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar IMCp PF12314.3 gi|282165287|ref|YP_003357672.1| - 0.029 14.5 3.8 0.087 12.9 2.7 1.9 1 0 0 1 1 1 0 Inner membrane complex protein Terminase_GpA PF05876.7 gi|282165287|ref|YP_003357672.1| - 0.032 12.6 0.1 0.046 12.0 0.1 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) HTH_AsnC-type PF13404.1 gi|282165287|ref|YP_003357672.1| - 0.042 13.4 1.4 0.24 10.9 0.1 2.7 2 1 1 3 3 3 0 AsnC-type helix-turn-helix domain Cyclin_C PF02984.14 gi|282165287|ref|YP_003357672.1| - 0.061 13.2 0.0 7.3 6.5 0.0 2.4 2 0 0 2 2 2 0 Cyclin, C-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|282165287|ref|YP_003357672.1| - 0.063 13.0 0.5 0.17 11.7 0.3 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_24 PF13412.1 gi|282165287|ref|YP_003357672.1| - 0.096 12.0 0.2 0.77 9.1 0.1 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding DZR PF12773.2 gi|282165287|ref|YP_003357672.1| - 0.15 11.9 0.4 0.35 10.7 0.3 1.6 1 0 0 1 1 1 0 Double zinc ribbon HTH_31 PF13560.1 gi|282165287|ref|YP_003357672.1| - 0.52 10.5 4.4 6.4 7.0 0.1 3.7 4 1 0 4 4 3 0 Helix-turn-helix domain Zn-ribbon_8 PF09723.5 gi|282165287|ref|YP_003357672.1| - 0.84 9.6 3.4 2.7 8.0 0.3 2.4 1 1 1 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|282165287|ref|YP_003357672.1| - 1.4 8.4 3.7 5.3 6.6 0.2 2.4 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Gar1 PF04410.9 gi|282165288|ref|YP_003357673.1| - 1.2e-10 41.0 0.0 1.3e-10 40.9 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PHP PF02811.14 gi|282165289|ref|YP_003357674.1| - 1.3e-16 60.9 0.1 1.6e-16 60.5 0.0 1.3 1 1 0 1 1 1 1 PHP domain TetR_C PF02909.12 gi|282165289|ref|YP_003357674.1| - 0.0026 17.4 0.0 0.0048 16.5 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor, C-terminal all-alpha domain RNase_P_p30 PF01876.11 gi|282165289|ref|YP_003357674.1| - 0.0044 16.2 0.0 0.032 13.4 0.0 2.1 1 1 0 1 1 1 1 RNase P subunit p30 PhageP22-tail PF09251.5 gi|282165289|ref|YP_003357674.1| - 0.058 11.6 0.0 0.076 11.2 0.0 1.1 1 0 0 1 1 1 0 Salmonella phage P22 tail-spike SRP19 PF01922.12 gi|282165290|ref|YP_003357675.1| - 8.1e-22 77.6 0.0 9.2e-22 77.4 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein DUF3194 PF11419.3 gi|282165291|ref|YP_003357676.1| - 0.012 15.8 5.0 0.016 15.4 3.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3194) Prefoldin_2 PF01920.15 gi|282165292|ref|YP_003357677.1| - 9.4e-25 86.4 18.9 1.1e-24 86.2 13.1 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF2051 PF09738.4 gi|282165292|ref|YP_003357677.1| - 0.001 18.4 8.9 0.0013 18.1 6.2 1.1 1 0 0 1 1 1 1 Double stranded RNA binding protein (DUF2051) YqjK PF13997.1 gi|282165292|ref|YP_003357677.1| - 0.035 14.2 1.8 0.074 13.2 1.2 1.5 1 0 0 1 1 1 0 YqjK-like protein NMD3 PF04981.8 gi|282165292|ref|YP_003357677.1| - 0.05 12.6 2.4 0.058 12.5 1.7 1.2 1 0 0 1 1 1 0 NMD3 family Seryl_tRNA_N PF02403.17 gi|282165292|ref|YP_003357677.1| - 0.062 13.3 8.7 0.87 9.6 1.0 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Tropomyosin_1 PF12718.2 gi|282165292|ref|YP_003357677.1| - 0.1 12.4 17.3 0.073 12.9 3.0 2.0 1 1 1 2 2 2 0 Tropomyosin like BLOC1_2 PF10046.4 gi|282165292|ref|YP_003357677.1| - 0.1 12.7 11.4 0.25 11.4 0.9 2.1 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 GlnE PF03710.10 gi|282165292|ref|YP_003357677.1| - 0.17 11.1 4.4 0.2 10.8 3.0 1.2 1 0 0 1 1 1 0 Glutamate-ammonia ligase adenylyltransferase Spc24 PF08286.6 gi|282165292|ref|YP_003357677.1| - 0.2 11.3 11.9 0.45 10.2 2.8 2.1 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF948 PF06103.6 gi|282165292|ref|YP_003357677.1| - 0.21 11.5 9.9 0.6 10.0 2.4 2.6 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Hemerythrin PF01814.18 gi|282165292|ref|YP_003357677.1| - 0.21 11.7 2.8 0.29 11.2 1.9 1.2 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain DUF3391 PF11871.3 gi|282165292|ref|YP_003357677.1| - 0.29 11.3 6.0 0.4 10.8 4.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) Uds1 PF15456.1 gi|282165292|ref|YP_003357677.1| - 0.47 10.4 10.7 0.7 9.9 7.4 1.2 1 0 0 1 1 1 0 Up-regulated During Septation Prefoldin PF02996.12 gi|282165292|ref|YP_003357677.1| - 0.52 9.9 15.9 1.2 8.8 1.7 2.7 1 1 2 3 3 3 0 Prefoldin subunit TMCO5 PF14992.1 gi|282165292|ref|YP_003357677.1| - 0.57 9.2 11.1 0.69 8.9 7.7 1.1 1 0 0 1 1 1 0 TMCO5 family FlxA PF14282.1 gi|282165292|ref|YP_003357677.1| - 0.63 10.0 21.4 2.3 8.1 2.1 2.2 2 0 0 2 2 2 0 FlxA-like protein DUF2968 PF11180.3 gi|282165292|ref|YP_003357677.1| - 0.66 9.3 19.4 0.28 10.5 6.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) SRP54 PF00448.17 gi|282165292|ref|YP_003357677.1| - 0.67 9.3 5.8 0.74 9.2 4.0 1.1 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF3901 PF13040.1 gi|282165292|ref|YP_003357677.1| - 0.83 8.9 5.5 1 8.6 2.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3901) Laminin_II PF06009.7 gi|282165292|ref|YP_003357677.1| - 0.9 9.2 12.0 15 5.3 8.3 2.0 1 1 0 1 1 1 0 Laminin Domain II RmuC PF02646.11 gi|282165292|ref|YP_003357677.1| - 0.98 8.1 10.9 0.93 8.2 4.3 2.0 1 1 1 2 2 2 0 RmuC family Peptidase_C98 PF15499.1 gi|282165292|ref|YP_003357677.1| - 1 8.5 4.7 4.2 6.5 3.0 1.8 1 1 0 1 1 1 0 Ubiquitin-specific peptidase-like, SUMO isopeptidase DUF572 PF04502.8 gi|282165292|ref|YP_003357677.1| - 1 8.4 9.1 1.2 8.2 6.3 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF572) GspL_C PF12693.2 gi|282165292|ref|YP_003357677.1| - 1.1 9.0 13.9 3.8 7.2 9.6 1.7 1 1 0 1 1 1 0 GspL periplasmic domain Apt1 PF10351.4 gi|282165292|ref|YP_003357677.1| - 1.2 7.9 7.4 1.4 7.7 5.1 1.0 1 0 0 1 1 1 0 Golgi-body localisation protein domain GAS PF13851.1 gi|282165292|ref|YP_003357677.1| - 1.2 8.2 17.2 5.8 6.0 11.9 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Rac1 PF09632.5 gi|282165292|ref|YP_003357677.1| - 1.4 7.9 7.3 2.2 7.2 5.0 1.3 1 1 0 1 1 1 0 Rac1-binding domain FUSC PF04632.7 gi|282165292|ref|YP_003357677.1| - 1.8 6.9 4.8 2.3 6.5 3.3 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF3053 PF11254.3 gi|282165292|ref|YP_003357677.1| - 1.9 7.7 11.2 5.2 6.2 7.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3053) AAA_13 PF13166.1 gi|282165292|ref|YP_003357677.1| - 1.9 6.8 7.1 2.4 6.4 4.9 1.1 1 0 0 1 1 1 0 AAA domain DDE_Tnp_1_6 PF13751.1 gi|282165292|ref|YP_003357677.1| - 2.3 8.2 4.8 0.57 10.1 0.6 1.8 2 0 0 2 2 2 0 Transposase DDE domain DUF972 PF06156.8 gi|282165292|ref|YP_003357677.1| - 2.5 8.4 12.5 69 3.8 8.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Syntaxin-6_N PF09177.6 gi|282165292|ref|YP_003357677.1| - 2.8 8.4 9.1 1.2 9.6 2.0 2.2 1 1 0 2 2 2 0 Syntaxin 6, N-terminal PilJ PF13675.1 gi|282165292|ref|YP_003357677.1| - 2.9 8.2 9.9 29 5.0 6.8 2.2 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term Cortex-I_coil PF09304.5 gi|282165292|ref|YP_003357677.1| - 3 7.9 19.0 5.6 7.0 3.3 2.2 1 1 1 2 2 2 0 Cortexillin I, coiled coil NTR2 PF15458.1 gi|282165292|ref|YP_003357677.1| - 3 7.0 19.7 1.1 8.3 3.3 2.0 2 0 0 2 2 2 0 Nineteen complex-related protein 2 SecD-TM1 PF13721.1 gi|282165292|ref|YP_003357677.1| - 3.2 8.0 10.2 1.5 9.1 1.0 2.1 1 1 1 2 2 2 0 SecD export protein N-terminal TM region Mod_r PF07200.8 gi|282165292|ref|YP_003357677.1| - 3.2 7.6 16.6 4 7.3 5.3 2.0 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Exonuc_VII_L PF02601.10 gi|282165292|ref|YP_003357677.1| - 3.3 6.8 7.9 4.3 6.4 5.5 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit TipAS PF07739.8 gi|282165292|ref|YP_003357677.1| - 3.9 7.8 8.1 0.32 11.3 0.5 2.2 2 1 0 2 2 2 0 TipAS antibiotic-recognition domain IncA PF04156.9 gi|282165292|ref|YP_003357677.1| - 3.9 7.0 20.5 38 3.7 14.2 1.9 1 1 0 1 1 1 0 IncA protein APG6 PF04111.7 gi|282165292|ref|YP_003357677.1| - 3.9 6.4 16.1 5.5 5.9 11.2 1.3 1 1 0 1 1 1 0 Autophagy protein Apg6 CDC37_N PF03234.9 gi|282165292|ref|YP_003357677.1| - 4.4 7.5 12.4 3.4 7.9 2.4 2.0 1 1 0 2 2 2 0 Cdc37 N terminal kinase binding DUF2203 PF09969.4 gi|282165292|ref|YP_003357677.1| - 5.1 7.3 9.8 2.1e+02 2.0 6.8 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF3086 PF11285.3 gi|282165292|ref|YP_003357677.1| - 6.2 5.5 9.8 0.48 9.1 1.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) V_ATPase_I PF01496.14 gi|282165292|ref|YP_003357677.1| - 7.8 4.2 11.3 14 3.3 7.8 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Fzo_mitofusin PF04799.8 gi|282165292|ref|YP_003357677.1| - 8.3 5.7 8.0 4.6 6.5 1.0 2.1 2 0 0 2 2 2 0 fzo-like conserved region YlqD PF11068.3 gi|282165292|ref|YP_003357677.1| - 9 6.3 21.5 0.76 9.8 2.5 2.1 1 1 1 2 2 2 0 YlqD protein DUF2802 PF10975.3 gi|282165292|ref|YP_003357677.1| - 9 6.1 18.0 0.3 10.8 0.4 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2802) TPR_MLP1_2 PF07926.7 gi|282165292|ref|YP_003357677.1| - 9.7 5.9 17.9 1.3e+02 2.2 12.4 2.0 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Pcc1 PF09341.5 gi|282165293|ref|YP_003357678.1| - 1e-14 54.3 0.0 1.1e-14 54.2 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 ATP-synt_Eps PF04627.8 gi|282165293|ref|YP_003357678.1| - 0.05 13.1 0.2 1.2 8.7 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ATP synthase epsilon chain DNA_RNApol_7kD PF03604.8 gi|282165294|ref|YP_003357679.1| - 3.4e-09 35.9 5.4 4.9e-09 35.4 3.8 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Cys_rich_CPXG PF14255.1 gi|282165294|ref|YP_003357679.1| - 7.4e-05 22.4 2.8 0.035 13.9 0.1 2.1 2 0 0 2 2 2 2 Cysteine-rich CPXCG zf-ribbon_3 PF13248.1 gi|282165294|ref|YP_003357679.1| - 9.8e-05 21.4 0.7 0.0098 15.0 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DUF951 PF06107.6 gi|282165294|ref|YP_003357679.1| - 0.00023 20.6 0.9 0.16 11.4 0.0 2.0 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF951) TF_Zn_Ribbon PF08271.7 gi|282165294|ref|YP_003357679.1| - 0.00037 19.7 1.1 0.00043 19.5 0.7 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|282165294|ref|YP_003357679.1| - 0.00037 20.2 3.9 0.091 12.5 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain HypA PF01155.14 gi|282165294|ref|YP_003357679.1| - 0.00042 19.9 0.4 0.00042 19.9 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|282165294|ref|YP_003357679.1| - 0.0053 16.3 2.0 0.009 15.6 1.4 1.5 1 1 0 1 1 1 1 Putative transposase DNA-binding domain DUF329 PF03884.9 gi|282165294|ref|YP_003357679.1| - 0.0053 16.2 1.5 0.68 9.5 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF329) Desulfoferrod_N PF06397.7 gi|282165294|ref|YP_003357679.1| - 0.0094 15.3 6.0 0.053 12.9 0.9 2.1 1 1 1 2 2 2 1 Desulfoferrodoxin, N-terminal domain zf-Di19 PF05605.7 gi|282165294|ref|YP_003357679.1| - 0.0098 15.9 0.5 0.55 10.3 0.0 2.1 2 0 0 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding C1_1 PF00130.17 gi|282165294|ref|YP_003357679.1| - 0.014 15.1 1.1 0.016 14.9 0.7 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.1 gi|282165294|ref|YP_003357679.1| - 0.016 14.6 5.2 0.063 12.7 3.6 1.8 1 1 1 2 2 2 0 zinc-ribbon domain CpXC PF14353.1 gi|282165294|ref|YP_003357679.1| - 0.018 15.0 2.5 0.24 11.3 0.0 2.0 1 1 1 2 2 2 0 CpXC protein DZR PF12773.2 gi|282165294|ref|YP_003357679.1| - 0.019 14.7 0.8 0.052 13.3 0.6 1.7 1 1 0 1 1 1 0 Double zinc ribbon TFIIS_C PF01096.13 gi|282165294|ref|YP_003357679.1| - 0.021 14.4 3.1 1.9 8.1 0.4 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-CHCC PF10276.4 gi|282165294|ref|YP_003357679.1| - 0.021 14.6 3.5 0.034 13.9 2.4 1.4 1 1 0 1 1 1 0 Zinc-finger domain zinc_ribbon_4 PF13717.1 gi|282165294|ref|YP_003357679.1| - 0.022 14.4 5.2 0.96 9.1 3.6 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|282165294|ref|YP_003357679.1| - 0.024 14.1 6.0 1.5 8.4 4.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain IBR PF01485.16 gi|282165294|ref|YP_003357679.1| - 0.029 14.2 1.0 0.036 13.9 0.7 1.2 1 0 0 1 1 1 0 IBR domain zf-IS66 PF13005.2 gi|282165294|ref|YP_003357679.1| - 0.034 14.1 0.7 2.1 8.4 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-AN1 PF01428.11 gi|282165294|ref|YP_003357679.1| - 0.035 13.9 0.3 0.061 13.2 0.2 1.4 1 1 0 1 1 1 0 AN1-like Zinc finger A2L_zn_ribbon PF08792.5 gi|282165294|ref|YP_003357679.1| - 0.047 13.1 2.4 0.59 9.6 2.2 1.9 1 1 1 2 2 2 0 A2L zinc ribbon domain DUF2296 PF10058.4 gi|282165294|ref|YP_003357679.1| - 0.052 13.3 2.5 2.3 8.0 0.3 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Zn-ribbon_8 PF09723.5 gi|282165294|ref|YP_003357679.1| - 0.052 13.5 4.1 0.14 12.1 2.8 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-FCS PF06467.9 gi|282165294|ref|YP_003357679.1| - 0.053 13.1 4.5 2 8.1 0.1 2.1 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zf-NADH-PPase PF09297.6 gi|282165294|ref|YP_003357679.1| - 0.054 13.0 1.6 0.77 9.3 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|282165294|ref|YP_003357679.1| - 0.069 13.1 1.1 0.069 13.1 0.8 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-LSD1 PF06943.7 gi|282165294|ref|YP_003357679.1| - 0.078 12.5 2.4 3.6 7.2 0.0 2.2 2 0 0 2 2 2 0 LSD1 zinc finger Prok-RING_1 PF14446.1 gi|282165294|ref|YP_003357679.1| - 0.1 12.3 2.0 0.56 9.9 1.5 1.8 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF2197 PF09963.4 gi|282165294|ref|YP_003357679.1| - 0.11 12.4 0.9 12 5.9 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) NOB1_Zn_bind PF08772.6 gi|282165294|ref|YP_003357679.1| - 0.12 12.2 0.5 0.15 11.8 0.3 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn_ribbon_recom PF13408.1 gi|282165294|ref|YP_003357679.1| - 0.12 12.5 2.3 0.71 10.1 0.2 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Ribosomal_S27e PF01667.12 gi|282165294|ref|YP_003357679.1| - 0.13 11.8 1.7 0.69 9.5 0.0 2.0 1 1 1 2 2 2 0 Ribosomal protein S27 Spt4 PF06093.8 gi|282165294|ref|YP_003357679.1| - 0.14 12.0 0.3 0.15 11.9 0.2 1.1 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Elf1 PF05129.8 gi|282165294|ref|YP_003357679.1| - 0.17 11.5 0.9 0.28 10.8 0.6 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Ogr_Delta PF04606.7 gi|282165294|ref|YP_003357679.1| - 0.19 11.4 2.7 0.82 9.3 0.1 2.0 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger FANCL_C PF11793.3 gi|282165294|ref|YP_003357679.1| - 0.22 11.4 1.8 0.76 9.7 0.1 1.9 1 1 1 2 2 2 0 FANCL C-terminal domain Lar_restr_allev PF14354.1 gi|282165294|ref|YP_003357679.1| - 0.26 11.5 1.7 0.5 10.7 1.2 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF3268 PF11672.3 gi|282165294|ref|YP_003357679.1| - 0.43 10.6 3.6 7.3 6.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) zf-TFIIB PF13453.1 gi|282165294|ref|YP_003357679.1| - 0.49 9.6 2.1 0.98 8.6 1.5 1.5 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-LITAF-like PF10601.4 gi|282165294|ref|YP_003357679.1| - 0.85 9.5 4.2 4 7.3 0.1 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-C2H2 PF00096.21 gi|282165294|ref|YP_003357679.1| - 0.99 9.8 4.0 9.2 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type PyrI_C PF02748.10 gi|282165294|ref|YP_003357679.1| - 1.1 8.7 4.8 0.78 9.2 0.1 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-BED PF02892.10 gi|282165294|ref|YP_003357679.1| - 1.2 8.9 5.4 0.47 10.2 0.1 2.0 1 1 1 2 2 2 0 BED zinc finger Cys_rich_KTR PF14205.1 gi|282165294|ref|YP_003357679.1| - 1.6 8.2 3.6 0.77 9.2 0.2 1.9 1 1 1 2 2 2 0 Cysteine-rich KTR UPF0547 PF10571.4 gi|282165294|ref|YP_003357679.1| - 1.8 8.3 12.0 1.9 8.2 2.3 2.4 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.15 gi|282165294|ref|YP_003357679.1| - 4.9 7.1 6.0 2.3e+02 1.7 4.2 2.1 1 1 0 1 1 1 0 Rubredoxin Ribosomal_L37ae PF01780.14 gi|282165295|ref|YP_003357680.1| - 1.1e-31 108.5 7.1 1.2e-31 108.4 4.9 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|282165295|ref|YP_003357680.1| - 0.00011 21.9 2.3 0.00017 21.3 1.6 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|282165295|ref|YP_003357680.1| - 0.0015 18.1 0.4 0.0025 17.4 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|282165295|ref|YP_003357680.1| - 0.0021 17.9 0.6 0.79 9.6 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|282165295|ref|YP_003357680.1| - 0.0022 17.2 0.6 0.0039 16.4 0.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zf-H2C2_2 PF13465.1 gi|282165295|ref|YP_003357680.1| - 0.003 17.7 0.7 0.78 10.1 0.1 2.3 2 0 0 2 2 2 1 Zinc-finger double domain zinc_ribbon_2 PF13240.1 gi|282165295|ref|YP_003357680.1| - 0.0039 16.6 1.8 0.55 9.7 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Elf1 PF05129.8 gi|282165295|ref|YP_003357680.1| - 0.0053 16.4 0.6 0.011 15.3 0.4 1.6 1 1 0 1 1 1 1 Transcription elongation factor Elf1 like DUF2387 PF09526.5 gi|282165295|ref|YP_003357680.1| - 0.0058 16.5 0.3 0.0092 15.8 0.2 1.4 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) RNA_POL_M_15KD PF02150.11 gi|282165295|ref|YP_003357680.1| - 0.0065 16.1 0.3 0.014 15.0 0.2 1.5 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit C1_1 PF00130.17 gi|282165295|ref|YP_003357680.1| - 0.0083 15.8 1.3 0.014 15.1 0.9 1.3 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Prim_Zn_Ribbon PF08273.7 gi|282165295|ref|YP_003357680.1| - 0.009 16.0 2.7 0.016 15.2 1.8 1.5 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase TFIIS_C PF01096.13 gi|282165295|ref|YP_003357680.1| - 0.013 15.0 2.1 1 9.0 0.1 2.5 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|282165295|ref|YP_003357680.1| - 0.015 14.5 1.9 0.95 8.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|282165295|ref|YP_003357680.1| - 0.02 15.1 0.5 0.035 14.3 0.4 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.7 gi|282165295|ref|YP_003357680.1| - 0.027 14.2 0.2 0.05 13.3 0.1 1.5 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-C2H2_4 PF13894.1 gi|282165295|ref|YP_003357680.1| - 0.028 14.7 1.5 7.6 7.1 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF1451 PF07295.6 gi|282165295|ref|YP_003357680.1| - 0.033 13.9 0.2 0.057 13.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DZR PF12773.2 gi|282165295|ref|YP_003357680.1| - 0.055 13.2 1.1 0.11 12.2 0.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2 PF00096.21 gi|282165295|ref|YP_003357680.1| - 0.062 13.6 2.1 3.3 8.2 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_4 PF13717.1 gi|282165295|ref|YP_003357680.1| - 0.078 12.6 0.7 5.2 6.8 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|282165295|ref|YP_003357680.1| - 0.078 12.5 0.5 4.8 6.8 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RRN7 PF11781.3 gi|282165295|ref|YP_003357680.1| - 0.11 12.0 1.4 0.2 11.1 1.0 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Rep_fac-A_C PF08646.5 gi|282165295|ref|YP_003357680.1| - 0.11 12.1 0.5 0.16 11.6 0.3 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain DUF2082 PF09855.4 gi|282165295|ref|YP_003357680.1| - 0.15 11.9 2.1 11 5.9 0.1 2.3 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF1610 PF07754.6 gi|282165295|ref|YP_003357680.1| - 0.18 11.9 0.4 0.18 11.9 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-UBP PF02148.14 gi|282165295|ref|YP_003357680.1| - 0.19 11.8 2.5 1.7 8.8 1.7 2.0 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein Zn-ribbon_8 PF09723.5 gi|282165295|ref|YP_003357680.1| - 0.27 11.2 3.6 2.4 8.1 0.1 2.1 1 1 0 2 2 2 0 Zinc ribbon domain Sgf11 PF08209.6 gi|282165295|ref|YP_003357680.1| - 0.28 10.5 2.8 0.29 10.4 0.1 2.3 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Desulfoferrod_N PF06397.7 gi|282165295|ref|YP_003357680.1| - 0.34 10.3 2.1 1.5 8.2 1.4 1.9 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-ISL3 PF14690.1 gi|282165295|ref|YP_003357680.1| - 0.89 9.6 5.6 1.3 9.1 0.2 2.5 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RanBP PF00641.13 gi|282165295|ref|YP_003357680.1| - 1.3 8.2 4.8 3.4 6.8 0.6 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-C2H2_3 PF13878.1 gi|282165295|ref|YP_003357680.1| - 1.7 8.2 3.8 5 6.7 0.3 2.3 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Mut7-C PF01927.11 gi|282165295|ref|YP_003357680.1| - 1.7 8.5 4.6 9.9 6.1 0.2 2.1 1 1 1 2 2 2 0 Mut7-C RNAse domain zf-C2HC_2 PF13913.1 gi|282165295|ref|YP_003357680.1| - 1.9 8.2 5.7 0.64 9.7 0.5 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-tcix PF14952.1 gi|282165295|ref|YP_003357680.1| - 4.3 6.7 12.1 2.5 7.5 0.5 2.8 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding RNase_PH PF01138.16 gi|282165296|ref|YP_003357681.1| - 1.3e-27 96.7 0.0 2e-27 96.1 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|282165296|ref|YP_003357681.1| - 2.8e-10 39.9 0.2 6.9e-10 38.7 0.2 1.7 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|282165297|ref|YP_003357682.1| - 4.2e-34 117.7 0.0 5.9e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|282165297|ref|YP_003357682.1| - 2.1e-17 62.8 0.4 4.9e-17 61.6 0.3 1.7 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|282165298|ref|YP_003357683.1| - 3.8e-09 36.0 0.3 9e-09 34.8 0.2 1.7 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.1 gi|282165298|ref|YP_003357683.1| - 1.1e-08 34.2 0.2 1.9e-08 33.4 0.1 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.18 gi|282165298|ref|YP_003357683.1| - 3.3e-05 23.8 0.0 6.3e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 S1 RNA binding domain KH_3 PF13014.1 gi|282165298|ref|YP_003357683.1| - 0.00019 21.0 0.2 0.00047 19.7 0.1 1.7 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|282165298|ref|YP_003357683.1| - 0.0007 19.1 0.3 0.0014 18.1 0.2 1.7 1 0 0 1 1 1 1 KH domain SBDS PF01172.13 gi|282165299|ref|YP_003357684.1| - 1.9e-27 94.8 0.0 3e-27 94.2 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|282165299|ref|YP_003357684.1| - 1e-23 83.3 0.0 1.4e-23 82.8 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.21 gi|282165300|ref|YP_003357685.1| - 7.1e-58 195.0 0.4 9e-58 194.6 0.3 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|282165300|ref|YP_003357685.1| - 7.3e-13 47.5 0.1 1.3e-12 46.7 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.14 gi|282165301|ref|YP_003357686.1| - 8.2e-16 57.8 0.0 1.3e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family ABC2_membrane PF01061.19 gi|282165302|ref|YP_003357687.1| - 4.8e-45 153.3 23.8 4.8e-45 153.3 16.5 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|282165302|ref|YP_003357687.1| - 1.3e-22 80.3 33.4 1.3e-22 80.3 23.2 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|282165302|ref|YP_003357687.1| - 2.3e-10 39.8 24.9 4.1e-10 38.9 17.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|282165302|ref|YP_003357687.1| - 2.2e-08 33.5 28.6 2.7e-08 33.2 19.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF3529 PF12046.3 gi|282165302|ref|YP_003357687.1| - 0.22 10.5 1.7 0.49 9.4 1.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) ABC_tran PF00005.22 gi|282165303|ref|YP_003357688.1| - 1.3e-34 119.3 0.0 2.5e-34 118.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282165303|ref|YP_003357688.1| - 3.9e-17 63.1 1.3 8.9e-13 48.8 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|282165303|ref|YP_003357688.1| - 1.6e-07 30.7 0.4 1.3e-05 24.4 0.3 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|282165303|ref|YP_003357688.1| - 1.3e-05 25.6 0.3 2.2e-05 24.9 0.2 1.6 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|282165303|ref|YP_003357688.1| - 4.1e-05 24.0 0.2 8.7e-05 22.9 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|282165303|ref|YP_003357688.1| - 4.7e-05 22.8 0.2 9.9e-05 21.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|282165303|ref|YP_003357688.1| - 0.00057 19.1 0.2 0.45 9.7 0.0 2.4 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|282165303|ref|YP_003357688.1| - 0.0013 18.9 0.1 0.035 14.3 0.1 2.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MutS_V PF00488.16 gi|282165303|ref|YP_003357688.1| - 0.0085 15.5 0.1 2.7 7.3 0.0 2.3 2 0 0 2 2 2 2 MutS domain V ACT_4 PF13291.1 gi|282165303|ref|YP_003357688.1| - 0.033 14.5 0.0 0.1 12.9 0.0 1.7 2 0 0 2 2 1 0 ACT domain AAA_14 PF13173.1 gi|282165303|ref|YP_003357688.1| - 0.057 13.3 0.1 11 5.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|282165303|ref|YP_003357688.1| - 0.069 11.9 0.3 0.16 10.6 0.1 1.6 2 0 0 2 2 2 0 ArgK protein AAA_22 PF13401.1 gi|282165303|ref|YP_003357688.1| - 0.097 12.8 0.6 1.5 8.9 0.4 2.4 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|282165303|ref|YP_003357688.1| - 0.099 11.3 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|282165303|ref|YP_003357688.1| - 0.14 11.2 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 RNase_P_p30 PF01876.11 gi|282165304|ref|YP_003357689.1| - 1e-34 118.9 0.0 1.2e-34 118.6 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 Amidohydro_4 PF13147.1 gi|282165304|ref|YP_003357689.1| - 3.3e-05 24.0 0.0 8.2e-05 22.7 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase RNA_binding PF01877.12 gi|282165305|ref|YP_003357690.1| - 9.9e-31 106.2 0.0 1.2e-30 106.0 0.0 1.0 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.12 gi|282165306|ref|YP_003357691.1| - 4.9e-80 267.5 10.0 5.7e-80 267.3 6.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 Oxidored_q6 PF01058.17 gi|282165307|ref|YP_003357692.1| - 5.9e-28 97.0 0.2 6.8e-28 96.8 0.1 1.0 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4_7 PF12838.2 gi|282165308|ref|YP_003357693.1| - 2.9e-11 43.5 28.5 6.1e-10 39.3 6.5 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282165308|ref|YP_003357693.1| - 1.8e-09 36.7 10.9 4e-07 29.3 1.5 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|282165308|ref|YP_003357693.1| - 1.9e-09 37.6 7.1 1.9e-09 37.6 4.9 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282165308|ref|YP_003357693.1| - 2.9e-09 37.5 9.8 1.5e-06 28.8 0.7 2.9 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|282165308|ref|YP_003357693.1| - 9.7e-09 34.9 7.7 9.7e-09 34.9 5.3 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282165308|ref|YP_003357693.1| - 6.2e-08 32.5 10.8 0.0027 17.6 0.1 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282165308|ref|YP_003357693.1| - 1.1e-06 28.2 9.6 9.7e-06 25.2 1.2 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282165308|ref|YP_003357693.1| - 1.3e-06 28.1 5.7 1.3e-06 28.1 4.0 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282165308|ref|YP_003357693.1| - 5.7e-06 26.5 12.8 0.0018 18.6 0.1 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282165308|ref|YP_003357693.1| - 9.5e-05 22.0 22.0 0.00068 19.4 1.9 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|282165308|ref|YP_003357693.1| - 0.00019 21.9 12.4 0.014 15.9 0.4 3.0 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|282165308|ref|YP_003357693.1| - 0.00027 21.2 15.8 0.041 14.3 1.3 3.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282165308|ref|YP_003357693.1| - 0.0053 16.9 2.0 0.0053 16.9 1.4 3.7 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|282165308|ref|YP_003357693.1| - 0.01 16.3 4.5 0.01 16.3 3.1 3.1 4 0 0 4 4 3 0 4Fe-4S binding domain T2SE PF00437.15 gi|282165308|ref|YP_003357693.1| - 0.025 13.5 0.0 0.032 13.1 0.0 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein 7TM_GPCR_Srz PF10325.4 gi|282165308|ref|YP_003357693.1| - 0.16 11.0 0.0 0.21 10.6 0.0 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srz C1_1 PF00130.17 gi|282165308|ref|YP_003357693.1| - 0.67 9.7 10.8 0.16 11.7 2.2 2.7 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Fer4_13 PF13370.1 gi|282165308|ref|YP_003357693.1| - 3.5 8.0 16.1 0.53 10.7 1.2 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain NADHdh PF00146.16 gi|282165309|ref|YP_003357694.1| - 2.6e-32 112.1 19.5 3.1e-32 111.8 13.5 1.1 1 0 0 1 1 1 1 NADH dehydrogenase DUF3687 PF12459.3 gi|282165309|ref|YP_003357694.1| - 0.17 11.1 2.5 0.7 9.1 1.7 2.1 1 0 0 1 1 1 0 D-Ala-teichoic acid biosynthesis protein Complex1_49kDa PF00346.14 gi|282165310|ref|YP_003357695.1| - 1.7e-44 151.8 0.0 1e-33 116.5 0.0 2.3 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|282165310|ref|YP_003357695.1| - 6.8e-22 77.6 0.0 9e-21 74.0 0.0 2.2 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.14 gi|282165310|ref|YP_003357695.1| - 2.3e-09 36.5 2.5 5.1e-08 32.1 0.0 2.6 3 0 0 3 3 3 2 Nickel-dependent hydrogenase DUF4199 PF13858.1 gi|282165311|ref|YP_003357696.1| - 0.011 15.6 4.1 0.013 15.4 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) CCG PF02754.11 gi|282165312|ref|YP_003357697.1| - 7.6e-23 80.3 0.6 1.3e-11 44.3 0.1 2.3 2 0 0 2 2 2 2 Cysteine-rich domain CGGC PF08821.6 gi|282165312|ref|YP_003357697.1| - 0.028 14.4 0.1 0.8 9.8 0.0 2.4 2 0 0 2 2 2 0 CGGC domain Asp_Glu_race PF01177.17 gi|282165312|ref|YP_003357697.1| - 0.1 12.4 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase Hydrolase_3 PF08282.7 gi|282165312|ref|YP_003357697.1| - 0.14 11.6 0.1 0.32 10.5 0.0 1.5 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Fer4_11 PF13247.1 gi|282165314|ref|YP_003357699.1| - 4.5e-22 77.8 21.0 3e-20 71.9 10.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282165314|ref|YP_003357699.1| - 1.8e-16 59.1 35.7 4.8e-06 26.1 1.3 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282165314|ref|YP_003357699.1| - 1.1e-12 48.1 71.4 1.1e-06 28.9 9.5 3.6 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4 PF00037.22 gi|282165314|ref|YP_003357699.1| - 1.2e-10 40.4 39.7 2.4e-06 26.8 2.7 5.5 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282165314|ref|YP_003357699.1| - 2.1e-10 39.8 33.0 4e-06 26.4 1.9 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282165314|ref|YP_003357699.1| - 2.4e-10 40.0 33.9 4.6e-05 23.1 10.3 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282165314|ref|YP_003357699.1| - 3.5e-10 39.9 33.3 6.8e-07 29.4 7.3 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282165314|ref|YP_003357699.1| - 9.2e-09 34.9 31.7 0.00045 20.3 1.0 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|282165314|ref|YP_003357699.1| - 1.6e-07 31.3 42.5 0.025 15.1 3.1 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282165314|ref|YP_003357699.1| - 6.8e-06 25.8 29.4 0.00036 20.3 7.4 2.9 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282165314|ref|YP_003357699.1| - 1.1e-05 25.3 25.4 0.0014 18.6 7.2 3.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282165314|ref|YP_003357699.1| - 2.7e-05 24.4 29.3 0.35 11.2 2.5 4.2 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282165314|ref|YP_003357699.1| - 0.0018 18.9 35.1 0.12 13.0 2.4 4.6 2 1 4 6 6 6 4 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|282165314|ref|YP_003357699.1| - 0.0079 16.5 2.8 0.0079 16.5 2.0 4.2 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282165314|ref|YP_003357699.1| - 0.015 15.6 2.7 0.015 15.6 1.9 3.5 2 2 1 3 3 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|282165314|ref|YP_003357699.1| - 0.028 14.9 28.1 0.031 14.8 6.1 3.9 2 2 0 2 2 2 0 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|282165315|ref|YP_003357700.1| - 9.5e-29 100.2 0.0 1.5e-28 99.5 0.0 1.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel MFS_1 PF07690.11 gi|282165316|ref|YP_003357701.1| - 2e-37 128.7 72.2 7.7e-27 93.9 29.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|282165316|ref|YP_003357701.1| - 1.2e-13 50.3 43.8 7.1e-11 41.1 17.0 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|282165316|ref|YP_003357701.1| - 1.2e-05 24.9 5.6 0.0064 16.2 0.4 3.7 2 1 1 3 3 3 2 MFS_1 like family MFS_3 PF05977.8 gi|282165316|ref|YP_003357701.1| - 0.039 12.0 0.2 0.039 12.0 0.2 2.2 1 1 1 2 2 2 0 Transmembrane secretion effector MFS_1 PF07690.11 gi|282165317|ref|YP_003357702.1| - 3e-33 114.9 48.4 2e-30 105.6 27.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|282165317|ref|YP_003357702.1| - 5.1e-10 38.0 20.3 7.9e-10 37.4 11.2 2.0 1 1 1 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.2 gi|282165317|ref|YP_003357702.1| - 0.00018 21.2 10.4 0.0013 18.4 0.8 3.2 3 0 0 3 3 3 2 MFS_1 like family MgtE PF01769.11 gi|282165317|ref|YP_003357702.1| - 0.019 15.2 1.3 0.019 15.2 0.9 4.2 3 1 0 4 4 4 0 Divalent cation transporter MFS_1 PF07690.11 gi|282165318|ref|YP_003357703.1| - 2.2e-28 98.9 44.3 6.3e-22 77.7 24.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|282165318|ref|YP_003357703.1| - 3.5e-06 26.7 5.6 0.0037 17.0 0.1 3.2 3 0 0 3 3 3 2 MFS_1 like family UNC-93 PF05978.11 gi|282165318|ref|YP_003357703.1| - 0.0003 20.3 2.0 0.0003 20.3 1.4 2.7 2 1 0 3 3 3 1 Ion channel regulatory protein UNC-93 MFS_2 PF13347.1 gi|282165318|ref|YP_003357703.1| - 0.75 8.1 37.3 0.15 10.3 7.6 2.9 1 1 2 3 3 3 0 MFS/sugar transport protein DUF1328 PF07043.8 gi|282165319|ref|YP_003357704.1| - 1.2e-12 47.5 14.0 2.1e-12 46.8 9.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF420 PF04238.7 gi|282165319|ref|YP_003357704.1| - 0.1 12.5 3.8 0.12 12.3 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF420) DUF3671 PF12420.3 gi|282165319|ref|YP_003357704.1| - 0.65 9.9 3.6 0.79 9.7 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function ABC2_membrane_2 PF12679.2 gi|282165319|ref|YP_003357704.1| - 0.75 8.5 10.2 0.84 8.4 7.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2207 PF09972.4 gi|282165319|ref|YP_003357704.1| - 1.4 7.3 11.2 1.5 7.3 7.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) MerC PF03203.9 gi|282165319|ref|YP_003357704.1| - 1.6 9.1 8.3 2.4 8.5 5.3 1.6 1 1 0 1 1 1 0 MerC mercury resistance protein COX2-transmemb PF09125.5 gi|282165319|ref|YP_003357704.1| - 2 8.0 10.5 0.23 11.0 1.3 2.2 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane DUF3753 PF12575.3 gi|282165319|ref|YP_003357704.1| - 8.3 6.2 8.9 0.42 10.4 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) SdpI PF13630.1 gi|282165319|ref|YP_003357704.1| - 9.2 6.0 10.3 14 5.4 7.1 1.4 1 0 0 1 1 1 0 SdpI/YhfL protein family NfeD PF01957.13 gi|282165319|ref|YP_003357704.1| - 9.8 6.3 11.5 12 6.0 8.0 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Na_H_Exchanger PF00999.16 gi|282165320|ref|YP_003357705.1| - 9.5e-49 165.9 52.2 1.2e-48 165.5 36.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Methyltrn_RNA_2 PF04013.7 gi|282165321|ref|YP_003357706.1| - 1.6e-65 220.4 0.0 1.8e-65 220.2 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase DUF2244 PF10003.4 gi|282165322|ref|YP_003357707.1| - 0.092 12.1 0.3 0.13 11.6 0.2 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) SRP54 PF00448.17 gi|282165325|ref|YP_003357710.1| - 4.5e-70 235.0 0.2 7.3e-70 234.4 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|282165325|ref|YP_003357710.1| - 6.1e-31 106.7 2.5 6.1e-31 106.7 1.7 3.1 5 0 0 5 5 4 1 Signal peptide binding domain SRP54_N PF02881.14 gi|282165325|ref|YP_003357710.1| - 3.9e-17 62.1 5.9 4e-17 62.0 0.5 2.9 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain MobB PF03205.9 gi|282165325|ref|YP_003357710.1| - 1.5e-05 24.7 0.1 4.3e-05 23.2 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|282165325|ref|YP_003357710.1| - 2.4e-05 24.4 0.1 8.7e-05 22.6 0.0 1.9 2 0 0 2 2 1 1 AAA domain CbiA PF01656.18 gi|282165325|ref|YP_003357710.1| - 3.2e-05 23.4 2.6 0.0005 19.5 0.9 3.0 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|282165325|ref|YP_003357710.1| - 4.3e-05 23.0 0.3 0.00034 20.1 0.1 2.4 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|282165325|ref|YP_003357710.1| - 0.0003 19.9 0.0 0.00079 18.5 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|282165325|ref|YP_003357710.1| - 0.00043 20.3 0.0 0.0012 18.8 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain 6PF2K PF01591.13 gi|282165325|ref|YP_003357710.1| - 0.00066 18.8 0.0 0.0013 17.8 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_33 PF13671.1 gi|282165325|ref|YP_003357710.1| - 0.0008 19.3 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|282165325|ref|YP_003357710.1| - 0.0012 17.6 0.2 0.0084 14.9 0.0 2.2 2 0 0 2 2 2 1 ArgK protein AAA_17 PF13207.1 gi|282165325|ref|YP_003357710.1| - 0.0013 19.5 0.2 0.0067 17.2 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|282165325|ref|YP_003357710.1| - 0.0026 17.2 0.1 0.0037 16.7 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain ATP_bind_1 PF03029.12 gi|282165325|ref|YP_003357710.1| - 0.009 15.5 0.1 0.14 11.6 0.0 2.4 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein APS_kinase PF01583.15 gi|282165325|ref|YP_003357710.1| - 0.01 15.4 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Ribosomal_S10 PF00338.17 gi|282165325|ref|YP_003357710.1| - 0.011 15.6 0.0 0.027 14.3 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein S10p/S20e TrwB_AAD_bind PF10412.4 gi|282165325|ref|YP_003357710.1| - 0.014 14.0 0.0 0.026 13.1 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.1 gi|282165325|ref|YP_003357710.1| - 0.022 15.0 0.1 0.087 13.1 0.0 2.1 2 1 0 2 2 2 0 AAA domain LpxK PF02606.9 gi|282165325|ref|YP_003357710.1| - 0.031 13.2 0.1 0.064 12.2 0.1 1.5 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Thymidylate_kin PF02223.12 gi|282165325|ref|YP_003357710.1| - 0.052 12.9 0.0 0.15 11.3 0.0 1.7 1 0 0 1 1 1 0 Thymidylate kinase SRPRB PF09439.5 gi|282165325|ref|YP_003357710.1| - 0.067 12.4 2.3 3.4 6.8 0.4 2.9 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Put_Phosphatase PF06888.7 gi|282165325|ref|YP_003357710.1| - 0.069 12.2 0.1 0.52 9.4 0.0 2.1 2 0 0 2 2 2 0 Putative Phosphatase KTI12 PF08433.5 gi|282165325|ref|YP_003357710.1| - 0.094 11.9 0.0 0.2 10.8 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|282165325|ref|YP_003357710.1| - 0.1 12.3 0.0 0.32 10.7 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain Med13_C PF06333.7 gi|282165326|ref|YP_003357711.1| - 0.13 10.7 1.3 0.14 10.7 0.9 1.2 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal ThiI PF02568.9 gi|282165327|ref|YP_003357712.1| - 6.4e-63 211.7 0.0 8.7e-63 211.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|282165327|ref|YP_003357712.1| - 8.4e-19 67.8 0.0 1.9e-18 66.7 0.0 1.5 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|282165327|ref|YP_003357712.1| - 2.6e-05 23.5 0.0 0.063 12.5 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|282165327|ref|YP_003357712.1| - 0.00032 19.3 0.0 0.00071 18.2 0.0 1.5 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|282165327|ref|YP_003357712.1| - 0.033 13.6 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase DUF2209 PF09974.4 gi|282165328|ref|YP_003357713.1| - 3.3e-33 114.4 1.1 3.8e-33 114.3 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) Microcin PF03526.8 gi|282165328|ref|YP_003357713.1| - 0.1 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Colicin E1 (microcin) immunity protein MMR_HSR1 PF01926.18 gi|282165329|ref|YP_003357714.1| - 2.7e-19 69.2 0.0 7.4e-19 67.8 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|282165329|ref|YP_003357714.1| - 3.3e-15 55.9 0.2 1.7e-14 53.6 0.0 2.1 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|282165329|ref|YP_003357714.1| - 7.9e-08 31.7 0.3 1.9e-07 30.4 0.2 1.7 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|282165329|ref|YP_003357714.1| - 2.2e-07 30.4 0.1 0.00019 20.9 0.0 2.4 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|282165329|ref|YP_003357714.1| - 2e-05 24.5 0.2 9.7e-05 22.2 0.1 2.1 1 1 1 2 2 2 1 Dynamin family Septin PF00735.13 gi|282165329|ref|YP_003357714.1| - 0.00033 19.7 0.1 0.4 9.6 0.0 2.3 2 0 0 2 2 2 2 Septin Arf PF00025.16 gi|282165329|ref|YP_003357714.1| - 0.0011 18.2 0.1 0.0032 16.7 0.1 1.8 1 1 0 1 1 1 1 ADP-ribosylation factor family DUF258 PF03193.11 gi|282165329|ref|YP_003357714.1| - 0.0013 17.8 0.1 0.014 14.5 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|282165329|ref|YP_003357714.1| - 0.0014 19.1 0.0 0.0035 17.8 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein PduV-EutP PF10662.4 gi|282165329|ref|YP_003357714.1| - 0.0015 18.0 0.3 0.035 13.5 0.1 2.7 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|282165329|ref|YP_003357714.1| - 0.0089 16.3 0.0 0.02 15.2 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|282165329|ref|YP_003357714.1| - 0.028 13.9 0.0 0.058 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|282165329|ref|YP_003357714.1| - 0.092 12.6 0.1 0.66 9.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain GBP PF02263.14 gi|282165329|ref|YP_003357714.1| - 0.11 11.5 0.1 1.2 8.0 0.0 2.1 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain AAA_23 PF13476.1 gi|282165329|ref|YP_003357714.1| - 2.5 8.3 4.8 1.1 9.5 0.1 2.4 2 1 1 3 3 3 0 AAA domain ApbA_C PF08546.6 gi|282165330|ref|YP_003357715.1| - 1.3e-41 141.4 0.1 1.9e-41 140.9 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|282165330|ref|YP_003357715.1| - 5.3e-29 100.6 0.3 9.8e-29 99.7 0.2 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|282165330|ref|YP_003357715.1| - 1.4e-05 25.4 0.5 4.4e-05 23.8 0.3 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|282165330|ref|YP_003357715.1| - 3.1e-05 23.7 0.8 0.00021 21.0 0.2 2.4 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|282165330|ref|YP_003357715.1| - 0.0013 18.1 0.4 0.0057 16.0 0.1 2.1 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|282165330|ref|YP_003357715.1| - 0.0078 16.0 0.9 0.011 15.6 0.2 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|282165330|ref|YP_003357715.1| - 0.028 14.0 2.2 0.029 14.0 0.1 2.0 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|282165330|ref|YP_003357715.1| - 0.045 12.6 0.6 0.07 12.0 0.2 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|282165330|ref|YP_003357715.1| - 0.086 12.8 0.1 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|282165330|ref|YP_003357715.1| - 0.74 10.1 3.0 0.55 10.5 0.1 2.2 3 0 0 3 3 3 0 Putative NAD(P)-binding CBFD_NFYB_HMF PF00808.18 gi|282165331|ref|YP_003357716.1| - 2.5e-19 69.1 0.3 2.7e-19 68.9 0.2 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|282165331|ref|YP_003357716.1| - 2.8e-11 43.3 0.1 3.1e-11 43.2 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|282165331|ref|YP_003357716.1| - 7.4e-05 22.8 0.1 9.7e-05 22.4 0.0 1.4 1 1 0 1 1 1 1 Kinetochore component CENP-S Bromo_TP PF07524.8 gi|282165331|ref|YP_003357716.1| - 0.00021 20.9 0.0 0.00022 20.9 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TFIID_20kDa PF03847.8 gi|282165331|ref|YP_003357716.1| - 0.00076 19.7 0.2 0.00087 19.5 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A CENP-T PF15511.1 gi|282165331|ref|YP_003357716.1| - 0.00079 18.7 0.1 0.0008 18.7 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T TAF PF02969.12 gi|282165331|ref|YP_003357716.1| - 0.0092 15.9 0.5 0.011 15.6 0.4 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-18kDa PF02269.11 gi|282165331|ref|YP_003357716.1| - 0.12 12.1 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit TPR_2 PF07719.12 gi|282165332|ref|YP_003357717.1| - 2e-17 61.5 2.1 0.00078 19.1 0.1 4.4 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|282165332|ref|YP_003357717.1| - 6.8e-17 60.8 3.2 2.9e-10 39.6 0.0 3.3 1 1 2 3 3 3 3 TPR repeat TPR_1 PF00515.23 gi|282165332|ref|YP_003357717.1| - 2e-15 55.6 9.4 0.00036 20.0 0.1 4.5 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282165332|ref|YP_003357717.1| - 2.6e-11 43.8 0.0 0.00026 21.5 0.0 3.4 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282165332|ref|YP_003357717.1| - 5e-11 42.3 0.2 2.9e-05 23.9 0.2 2.7 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282165332|ref|YP_003357717.1| - 3.4e-10 38.9 1.7 0.066 13.0 0.1 4.5 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282165332|ref|YP_003357717.1| - 1.7e-08 33.9 0.6 0.0055 16.8 0.0 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282165332|ref|YP_003357717.1| - 3.1e-06 27.4 0.1 0.13 12.6 0.0 2.8 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282165332|ref|YP_003357717.1| - 8.7e-06 25.9 0.2 3 8.7 0.2 4.6 1 1 3 4 4 4 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282165332|ref|YP_003357717.1| - 9.3e-06 25.4 0.0 0.065 13.0 0.0 2.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282165332|ref|YP_003357717.1| - 1.3e-05 24.9 0.4 0.48 10.4 0.0 3.5 4 0 0 4 4 4 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|282165332|ref|YP_003357717.1| - 1.6e-05 23.8 0.3 1.6e-05 23.8 0.2 2.5 1 1 0 2 2 2 1 NMDA receptor-regulated protein 1 TPR_6 PF13174.1 gi|282165332|ref|YP_003357717.1| - 7.4e-05 22.9 0.8 11 6.6 0.0 3.9 4 0 0 4 4 3 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|282165332|ref|YP_003357717.1| - 0.0021 18.1 0.3 0.023 14.8 0.0 2.3 1 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|282165332|ref|YP_003357717.1| - 0.004 16.9 0.1 0.98 9.2 0.0 3.2 2 2 1 3 3 3 1 Domain of Unknown Function (DUF3856) PSDC PF12588.3 gi|282165332|ref|YP_003357717.1| - 0.0043 16.6 0.0 0.0068 16.0 0.0 1.3 1 0 0 1 1 1 1 Phophatidylserine decarboxylase TPR_7 PF13176.1 gi|282165332|ref|YP_003357717.1| - 0.0052 16.4 0.3 18 5.4 0.0 3.6 3 1 0 3 3 3 0 Tetratricopeptide repeat PPR PF01535.15 gi|282165332|ref|YP_003357717.1| - 0.073 13.0 0.1 16 5.7 0.0 3.4 3 0 0 3 3 3 0 PPR repeat AA_kinase PF00696.23 gi|282165334|ref|YP_003357719.1| - 2.4e-25 89.4 0.0 3e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family PBP_like_2 PF12849.2 gi|282165335|ref|YP_003357720.1| - 1.6e-19 70.4 4.5 2.2e-19 70.0 3.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|282165335|ref|YP_003357720.1| - 4.1e-11 42.9 0.1 1.2e-10 41.4 0.1 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|282165335|ref|YP_003357720.1| - 0.0047 15.8 0.1 0.0096 14.8 0.0 1.5 1 1 0 1 1 1 1 PBP superfamily domain Adeno_100 PF02438.11 gi|282165335|ref|YP_003357720.1| - 0.011 13.9 0.0 0.015 13.5 0.0 1.1 1 0 0 1 1 1 0 Late 100kD protein LysR_substrate PF03466.15 gi|282165335|ref|YP_003357720.1| - 0.013 14.5 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain MatE PF01554.13 gi|282165335|ref|YP_003357720.1| - 0.074 12.6 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 MatE Pterin_4a PF01329.14 gi|282165336|ref|YP_003357721.1| - 1e-23 82.8 0.0 1.2e-23 82.6 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase TatD_DNase PF01026.16 gi|282165337|ref|YP_003357722.1| - 7.6e-22 77.7 0.0 8.9e-22 77.5 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase Tox-HNH-EHHH PF15657.1 gi|282165337|ref|YP_003357722.1| - 0.012 15.6 0.2 4.2 7.6 0.0 2.7 3 0 0 3 3 3 0 HNH/Endo VII superfamily nuclease toxins Na_H_Exchanger PF00999.16 gi|282165338|ref|YP_003357723.1| - 5.7e-76 255.4 59.7 7.7e-76 255.0 41.4 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|282165338|ref|YP_003357723.1| - 7.3e-22 77.5 0.2 1.3e-21 76.7 0.2 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|282165338|ref|YP_003357723.1| - 5.4e-15 54.7 0.0 3e-14 52.3 0.0 2.2 2 0 0 2 2 2 1 TrkA-C domain CTP-dep_RFKase PF01982.11 gi|282165339|ref|YP_003357724.1| - 2.3e-41 140.1 0.0 3.3e-41 139.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_24 PF13412.1 gi|282165339|ref|YP_003357724.1| - 3.4e-05 23.1 0.1 5.9e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|282165339|ref|YP_003357724.1| - 0.0002 20.9 0.2 0.00033 20.2 0.2 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|282165339|ref|YP_003357724.1| - 0.00028 20.5 0.1 0.0005 19.7 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|282165339|ref|YP_003357724.1| - 0.0015 18.2 0.1 0.0026 17.5 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|282165339|ref|YP_003357724.1| - 0.0062 16.0 0.1 0.011 15.2 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|282165339|ref|YP_003357724.1| - 0.0071 16.1 0.1 0.012 15.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|282165339|ref|YP_003357724.1| - 0.0084 16.4 0.3 0.013 15.7 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|282165339|ref|YP_003357724.1| - 0.0094 15.9 0.0 0.049 13.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|282165339|ref|YP_003357724.1| - 0.0096 15.4 0.0 0.024 14.1 0.0 1.8 1 0 0 1 1 1 1 LexA DNA binding domain Antitoxin-MazE PF04014.13 gi|282165339|ref|YP_003357724.1| - 0.049 13.3 0.1 0.14 11.9 0.1 1.8 1 0 0 1 1 1 0 Antidote-toxin recognition MazE HTH_DeoR PF08220.7 gi|282165339|ref|YP_003357724.1| - 0.059 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain AAA_assoc_C PF09821.4 gi|282165339|ref|YP_003357724.1| - 0.11 12.7 0.1 0.33 11.2 0.0 1.8 1 1 1 2 2 2 0 C-terminal AAA-associated domain HTH_IclR PF09339.5 gi|282165339|ref|YP_003357724.1| - 0.12 11.9 0.4 0.2 11.2 0.3 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DHBP_synthase PF00926.14 gi|282165340|ref|YP_003357725.1| - 1.5e-63 213.5 0.0 1.7e-63 213.3 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase PEP-utilizers PF00391.18 gi|282165340|ref|YP_003357725.1| - 0.00018 20.9 0.3 0.85 9.2 0.0 3.3 2 1 1 3 3 3 2 PEP-utilising enzyme, mobile domain Ribosomal_S27 PF01599.14 gi|282165341|ref|YP_003357726.1| - 4.9e-19 67.8 2.2 6.2e-19 67.5 1.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a DZR PF12773.2 gi|282165341|ref|YP_003357726.1| - 0.018 14.8 0.6 0.025 14.3 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L37e PF01907.14 gi|282165341|ref|YP_003357726.1| - 0.02 14.7 3.0 0.032 14.0 2.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e Nudix_N_2 PF14803.1 gi|282165341|ref|YP_003357726.1| - 0.035 13.8 1.8 0.29 10.8 1.3 2.0 1 1 0 1 1 1 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.2 gi|282165341|ref|YP_003357726.1| - 0.051 13.3 1.8 0.098 12.4 1.3 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|282165341|ref|YP_003357726.1| - 0.056 13.1 0.9 0.072 12.7 0.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|282165341|ref|YP_003357726.1| - 0.065 12.7 0.9 0.15 11.5 0.7 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|282165341|ref|YP_003357726.1| - 0.067 12.6 0.9 0.13 11.7 0.6 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|282165341|ref|YP_003357726.1| - 0.1 12.2 0.5 0.3 10.8 0.3 1.8 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit GFA PF04828.9 gi|282165341|ref|YP_003357726.1| - 0.13 12.2 1.2 0.72 9.8 0.2 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF1936 PF09151.5 gi|282165341|ref|YP_003357726.1| - 0.13 11.7 0.7 1.4 8.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) DUF2082 PF09855.4 gi|282165341|ref|YP_003357726.1| - 0.34 10.8 4.8 0.82 9.5 0.7 2.4 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-NADH-PPase PF09297.6 gi|282165341|ref|YP_003357726.1| - 2.1 7.9 5.3 25 4.4 3.7 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|282165341|ref|YP_003357726.1| - 3.5 6.9 6.5 36 3.7 4.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S24e PF01282.14 gi|282165342|ref|YP_003357727.1| - 3.8e-26 90.7 3.1 5.1e-26 90.2 2.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.7 gi|282165343|ref|YP_003357728.1| - 7.4e-41 138.3 0.1 9.1e-41 138.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.8 gi|282165344|ref|YP_003357729.1| - 7.9e-13 48.0 0.0 1e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.10 gi|282165344|ref|YP_003357729.1| - 6.6e-05 22.2 1.2 9.9e-05 21.6 0.8 1.2 1 0 0 1 1 1 1 RecR protein Laminin_EGF PF00053.19 gi|282165344|ref|YP_003357729.1| - 0.041 13.8 0.6 0.049 13.5 0.4 1.2 1 0 0 1 1 1 0 Laminin EGF-like (Domains III and V) DZR PF12773.2 gi|282165344|ref|YP_003357729.1| - 0.046 13.5 0.7 0.063 13.0 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-C4H2 PF10146.4 gi|282165344|ref|YP_003357729.1| - 0.072 13.0 0.3 0.091 12.7 0.2 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein zf-RING_4 PF14570.1 gi|282165344|ref|YP_003357729.1| - 0.081 12.5 0.7 0.11 12.0 0.5 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-C3HC4_3 PF13920.1 gi|282165344|ref|YP_003357729.1| - 0.13 11.9 1.9 0.18 11.4 1.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DFP PF04127.10 gi|282165345|ref|YP_003357730.1| - 9.2e-41 139.4 0.2 1.9e-39 135.2 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|282165345|ref|YP_003357730.1| - 6.4e-29 100.2 1.2 9.5e-29 99.6 0.2 1.7 2 0 0 2 2 2 1 Flavoprotein NAD_binding_2 PF03446.10 gi|282165345|ref|YP_003357730.1| - 0.036 13.9 0.0 0.16 11.8 0.0 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase BMC PF00936.14 gi|282165345|ref|YP_003357730.1| - 0.087 12.5 0.9 21 4.8 0.0 3.1 2 1 0 3 3 3 0 BMC domain Rho_RNA_bind PF07497.7 gi|282165345|ref|YP_003357730.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain GHMP_kinases_N PF00288.21 gi|282165346|ref|YP_003357731.1| - 4.1e-07 29.9 1.3 7.9e-07 29.0 0.9 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|282165346|ref|YP_003357731.1| - 0.039 14.1 0.4 0.3 11.3 0.0 2.2 2 0 0 2 2 2 0 GHMP kinases C terminal E1-E2_ATPase PF00122.15 gi|282165347|ref|YP_003357732.1| - 2.8e-72 242.5 8.7 2.8e-72 242.5 6.0 3.2 3 1 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|282165347|ref|YP_003357732.1| - 2e-44 151.2 5.6 2e-44 151.2 3.9 1.8 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|282165347|ref|YP_003357732.1| - 1.5e-29 103.9 0.0 1.1e-28 101.1 0.0 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|282165347|ref|YP_003357732.1| - 2.1e-19 68.7 0.0 5.6e-19 67.3 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|282165347|ref|YP_003357732.1| - 4.3e-15 56.3 0.0 1.1e-14 55.0 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|282165347|ref|YP_003357732.1| - 8.8e-15 54.4 0.0 1.7e-14 53.5 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|282165347|ref|YP_003357732.1| - 2.4e-09 37.1 0.3 2.1e-05 24.2 0.2 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase PPPI_inhib PF14895.1 gi|282165347|ref|YP_003357732.1| - 0.12 11.1 0.0 0.18 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein phosphatase 1 inhibitor vWA-TerF-like PF10138.4 gi|282165347|ref|YP_003357732.1| - 0.17 11.6 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 vWA found in TerF C terminus DUF4349 PF14257.1 gi|282165348|ref|YP_003357733.1| - 1.4e-72 244.1 0.1 1.6e-72 243.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) CDK2AP PF09806.4 gi|282165348|ref|YP_003357733.1| - 0.18 12.0 4.6 0.26 11.4 1.2 2.0 1 1 1 2 2 2 0 Cyclin-dependent kinase 2-associated protein tRNA-synt_1d PF00750.14 gi|282165349|ref|YP_003357734.1| - 1.6e-64 218.0 0.0 2e-64 217.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|282165349|ref|YP_003357734.1| - 3.4e-32 110.8 0.4 3.4e-32 110.8 0.3 2.2 3 0 0 3 3 3 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|282165349|ref|YP_003357734.1| - 4e-12 46.4 0.1 4.5e-11 43.1 0.0 2.6 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|282165349|ref|YP_003357734.1| - 5.3e-05 22.0 0.1 0.11 11.2 0.0 3.2 3 1 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|282165349|ref|YP_003357734.1| - 0.027 13.1 0.0 8.4 4.9 0.0 2.9 3 0 0 3 3 3 0 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|282165349|ref|YP_003357734.1| - 0.032 13.3 0.1 0.067 12.3 0.0 1.5 1 1 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain DUF3647 PF12363.3 gi|282165349|ref|YP_003357734.1| - 0.037 14.1 0.1 0.11 12.5 0.1 1.8 1 0 0 1 1 1 0 Phage protein TMF_TATA_bd PF12325.3 gi|282165349|ref|YP_003357734.1| - 0.063 13.0 0.5 16 5.2 0.0 3.1 3 0 0 3 3 3 0 TATA element modulatory factor 1 TATA binding eRF1_3 PF03465.10 gi|282165350|ref|YP_003357735.1| - 7.4e-33 113.1 0.4 1.6e-32 112.1 0.3 1.6 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|282165350|ref|YP_003357735.1| - 4.2e-32 111.2 0.0 8.2e-32 110.3 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_1 PF03463.10 gi|282165350|ref|YP_003357735.1| - 1.3e-23 82.9 0.0 7.5e-23 80.5 0.0 2.2 3 0 0 3 3 3 1 eRF1 domain 1 DUF4182 PF13790.1 gi|282165350|ref|YP_003357735.1| - 0.002 17.8 1.6 0.12 12.2 1.4 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4182) zf-DNL PF05180.7 gi|282165350|ref|YP_003357735.1| - 0.0037 16.9 0.8 0.0087 15.7 0.5 1.6 1 0 0 1 1 1 1 DNL zinc finger zf-LITAF-like PF10601.4 gi|282165350|ref|YP_003357735.1| - 0.022 14.6 2.6 0.15 11.9 0.2 2.3 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain HypA PF01155.14 gi|282165350|ref|YP_003357735.1| - 0.044 13.4 0.1 0.089 12.4 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Clr5 PF14420.1 gi|282165350|ref|YP_003357735.1| - 0.14 12.0 0.2 0.46 10.4 0.0 1.9 2 0 0 2 2 1 0 Clr5 domain zinc_ribbon_5 PF13719.1 gi|282165350|ref|YP_003357735.1| - 0.18 11.4 1.0 18 5.0 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|282165350|ref|YP_003357735.1| - 0.22 11.2 1.1 20 4.9 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|282165350|ref|YP_003357735.1| - 1.3 8.2 3.8 0.77 9.0 0.0 2.5 3 0 0 3 3 3 0 Transcription factor zinc-finger Bac_luciferase PF00296.15 gi|282165351|ref|YP_003357736.1| - 3.1e-58 197.3 0.0 3.5e-58 197.1 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Chon_Sulph_att PF06566.6 gi|282165351|ref|YP_003357736.1| - 0.011 15.3 0.2 0.018 14.6 0.1 1.3 1 0 0 1 1 1 0 Chondroitin sulphate attachment domain DeoC PF01791.4 gi|282165352|ref|YP_003357737.1| - 3.7e-48 163.8 2.9 4e-48 163.7 2.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase His_biosynth PF00977.16 gi|282165352|ref|YP_003357737.1| - 0.00061 19.1 0.2 0.0023 17.2 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|282165352|ref|YP_003357737.1| - 0.00065 18.7 0.7 0.0016 17.4 0.2 1.7 1 1 0 2 2 2 1 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|282165352|ref|YP_003357737.1| - 0.0014 17.8 1.5 0.0032 16.7 0.6 1.8 1 1 1 2 2 2 1 PcrB family IMPDH PF00478.20 gi|282165352|ref|YP_003357737.1| - 0.0015 17.4 0.6 0.002 17.0 0.4 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|282165352|ref|YP_003357737.1| - 0.031 13.2 0.3 0.08 11.9 0.2 1.7 1 1 1 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF2802 PF10975.3 gi|282165352|ref|YP_003357737.1| - 0.043 13.5 0.5 2.1 8.1 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2802) TPR_11 PF13414.1 gi|282165353|ref|YP_003357738.1| - 2.1e-69 229.1 11.9 6.8e-14 51.2 0.1 6.5 2 2 6 8 8 8 8 TPR repeat TPR_1 PF00515.23 gi|282165353|ref|YP_003357738.1| - 4.8e-66 215.8 4.8 4.3e-08 32.4 0.0 10.3 10 1 0 10 10 10 8 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282165353|ref|YP_003357738.1| - 4.3e-59 191.7 11.0 1e-06 28.2 0.0 10.1 10 0 0 10 10 10 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|282165353|ref|YP_003357738.1| - 6e-48 157.0 4.0 9.8e-05 22.2 0.0 10.1 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282165353|ref|YP_003357738.1| - 9.7e-42 137.6 2.7 7.2e-05 22.2 0.0 10.2 8 3 2 10 10 10 8 Tetratricopeptide repeat TPR_16 PF13432.1 gi|282165353|ref|YP_003357738.1| - 5.3e-40 135.2 0.3 2e-07 31.4 0.0 7.0 3 3 4 7 7 7 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282165353|ref|YP_003357738.1| - 4.1e-35 117.0 4.8 0.0001 22.6 0.1 9.6 2 1 8 10 10 10 7 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282165353|ref|YP_003357738.1| - 1.5e-34 117.7 3.3 2.4e-07 30.5 0.0 6.7 1 1 6 8 8 8 7 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282165353|ref|YP_003357738.1| - 8.2e-28 96.5 0.0 1.2e-06 28.7 0.1 6.0 2 2 2 6 6 6 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|282165353|ref|YP_003357738.1| - 6.5e-22 77.1 8.9 0.00057 19.6 0.1 6.4 2 1 5 8 8 7 7 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282165353|ref|YP_003357738.1| - 2e-18 65.5 1.1 0.077 13.4 0.1 8.3 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282165353|ref|YP_003357738.1| - 3.1e-17 60.9 0.4 4.9 7.2 0.0 8.9 9 0 0 9 9 9 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|282165353|ref|YP_003357738.1| - 9.6e-14 51.2 0.2 0.00013 22.0 0.0 4.1 2 1 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.3 gi|282165353|ref|YP_003357738.1| - 1e-10 41.0 0.0 0.0092 14.7 0.0 4.6 3 1 1 4 4 4 4 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|282165353|ref|YP_003357738.1| - 2.2e-10 40.0 0.3 0.09 11.8 0.0 5.5 1 1 5 6 6 6 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|282165353|ref|YP_003357738.1| - 2.1e-08 33.9 2.2 2 8.3 0.0 6.3 6 1 1 7 7 6 1 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|282165353|ref|YP_003357738.1| - 2.3e-06 27.3 3.2 1.2 9.2 0.0 6.2 7 0 0 7 7 7 2 Tetratricopeptide repeat MIT PF04212.13 gi|282165353|ref|YP_003357738.1| - 3.8e-05 23.4 2.3 14 5.6 0.2 6.5 6 1 2 8 8 7 0 MIT (microtubule interacting and transport) domain DUF3856 PF12968.2 gi|282165353|ref|YP_003357738.1| - 6.8e-05 22.7 5.8 1.4 8.7 0.1 6.1 1 1 5 6 6 6 1 Domain of Unknown Function (DUF3856) TPR_4 PF07721.9 gi|282165353|ref|YP_003357738.1| - 0.00041 20.4 2.1 18 6.1 0.0 6.1 7 0 0 7 7 5 0 Tetratricopeptide repeat PPR PF01535.15 gi|282165353|ref|YP_003357738.1| - 0.00081 19.2 8.0 12 6.1 0.0 6.3 6 0 0 6 6 6 0 PPR repeat BTAD PF03704.12 gi|282165353|ref|YP_003357738.1| - 0.0011 19.2 2.0 1.7 8.9 0.1 4.0 4 1 0 5 5 3 1 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|282165353|ref|YP_003357738.1| - 0.0035 17.3 0.4 21 5.1 0.0 5.0 3 2 2 6 6 6 0 Tetratrico peptide repeat FAT PF02259.18 gi|282165353|ref|YP_003357738.1| - 0.0047 15.9 0.3 30 3.4 0.0 5.0 1 1 4 5 5 5 0 FAT domain TPR_21 PF09976.4 gi|282165353|ref|YP_003357738.1| - 0.0078 16.1 0.1 2.9 7.8 0.0 3.0 2 1 1 3 3 3 1 Tetratricopeptide repeat ChAPs PF09295.5 gi|282165353|ref|YP_003357738.1| - 0.01 14.6 0.0 0.73 8.5 0.0 2.5 1 1 2 3 3 3 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_3 PF07720.7 gi|282165353|ref|YP_003357738.1| - 0.016 15.0 0.1 3.2 7.6 0.1 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat PPTA PF01239.17 gi|282165353|ref|YP_003357738.1| - 0.033 13.5 2.0 8.7 5.8 0.0 4.9 7 0 0 7 7 6 0 Protein prenyltransferase alpha subunit repeat SHNi-TPR PF10516.4 gi|282165353|ref|YP_003357738.1| - 0.06 12.5 0.1 3.5 6.9 0.1 2.9 2 0 0 2 2 2 0 SHNi-TPR TOM20_plant PF06552.7 gi|282165353|ref|YP_003357738.1| - 0.068 12.7 0.2 14 5.2 0.0 3.5 3 1 1 4 4 4 0 Plant specific mitochondrial import receptor subunit TOM20 Aminotran_4 PF01063.14 gi|282165354|ref|YP_003357739.1| - 2.1e-50 171.3 0.0 2.5e-50 171.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV Oxidored_q1 PF00361.15 gi|282165355|ref|YP_003357740.1| - 3.7e-48 164.1 25.5 3.7e-48 164.1 17.6 2.8 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains HycI PF01750.13 gi|282165356|ref|YP_003357741.1| - 4.3e-11 42.4 0.1 2.2e-10 40.2 0.1 1.8 1 1 1 2 2 2 1 Hydrogenase maturation protease B12-binding PF02310.14 gi|282165356|ref|YP_003357741.1| - 0.00038 20.3 0.3 0.16 11.8 0.0 2.7 1 1 2 3 3 3 2 B12 binding domain F420_oxidored PF03807.12 gi|282165356|ref|YP_003357741.1| - 0.053 13.9 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Acylphosphatase PF00708.13 gi|282165357|ref|YP_003357742.1| - 7.9e-26 89.9 0.3 8.6e-26 89.8 0.2 1.0 1 0 0 1 1 1 1 Acylphosphatase BLUF PF04940.7 gi|282165357|ref|YP_003357742.1| - 0.001 18.7 0.0 0.0011 18.6 0.0 1.1 1 0 0 1 1 1 1 Sensors of blue-light using FAD Gp_dh_C PF02800.15 gi|282165358|ref|YP_003357743.1| - 4.7e-21 74.8 0.0 7e-21 74.3 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|282165358|ref|YP_003357743.1| - 3.2e-19 69.3 0.2 6e-19 68.4 0.1 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|282165358|ref|YP_003357743.1| - 7.8e-08 32.2 0.8 5.3e-07 29.5 0.0 2.6 2 2 1 3 3 3 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|282165358|ref|YP_003357743.1| - 0.00032 21.0 0.1 0.0011 19.2 0.0 2.0 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|282165358|ref|YP_003357743.1| - 0.0024 16.9 0.2 0.0051 15.8 0.0 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|282165358|ref|YP_003357743.1| - 0.012 14.7 0.1 3.2 6.8 0.0 2.3 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|282165358|ref|YP_003357743.1| - 0.024 15.0 0.1 0.34 11.3 0.1 2.4 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|282165358|ref|YP_003357743.1| - 0.026 15.0 0.4 0.29 11.6 0.0 2.5 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.13 gi|282165358|ref|YP_003357743.1| - 0.065 12.8 1.2 0.2 11.2 0.0 2.3 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|282165358|ref|YP_003357743.1| - 0.077 12.9 0.0 0.22 11.5 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain Semialdhyde_dh PF01118.19 gi|282165358|ref|YP_003357743.1| - 0.084 13.1 0.0 0.23 11.7 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF2085 PF09858.4 gi|282165360|ref|YP_003357745.1| - 3.3e-30 104.0 0.1 6e-30 103.1 0.1 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2085) DUF2955 PF11168.3 gi|282165360|ref|YP_003357745.1| - 0.0024 17.5 0.3 0.0024 17.5 0.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2955) DUF2085 PF09858.4 gi|282165361|ref|YP_003357746.1| - 4.4e-33 113.2 1.3 4.4e-33 113.2 0.9 2.0 2 0 0 2 2 2 1 Predicted membrane protein (DUF2085) UPF0118 PF01594.11 gi|282165362|ref|YP_003357747.1| - 1.9e-28 99.4 47.2 2.6e-28 98.9 32.7 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF20 Peptidase_M32 PF02074.10 gi|282165363|ref|YP_003357748.1| - 3.6e-159 530.5 0.0 4e-159 530.4 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF89 PF01937.14 gi|282165364|ref|YP_003357749.1| - 4.4e-52 177.0 0.0 5.1e-52 176.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Polysacc_deac_1 PF01522.16 gi|282165364|ref|YP_003357749.1| - 0.06 12.9 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Polysaccharide deacetylase Glycos_transf_1 PF00534.15 gi|282165365|ref|YP_003357750.1| - 1.9e-28 99.0 0.0 2.8e-28 98.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282165365|ref|YP_003357750.1| - 6.6e-18 65.3 0.0 9.6e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|282165365|ref|YP_003357750.1| - 3.9e-16 59.3 0.1 4.3e-08 32.9 0.0 2.2 2 0 0 2 2 2 2 Starch synthase catalytic domain Glyco_transf_4 PF13439.1 gi|282165365|ref|YP_003357750.1| - 1.3e-14 54.2 0.0 2.5e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|282165365|ref|YP_003357750.1| - 1.1e-13 51.4 0.0 2.6e-13 50.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|282165365|ref|YP_003357750.1| - 1.2e-06 28.4 0.0 2.4e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|282165365|ref|YP_003357750.1| - 0.077 13.2 0.0 0.29 11.4 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 Peptidase_M29 PF02073.10 gi|282165366|ref|YP_003357751.1| - 5.3e-40 137.4 0.0 7.7e-40 136.8 0.0 1.3 1 1 0 1 1 1 1 Thermophilic metalloprotease (M29) AAA_2 PF07724.9 gi|282165367|ref|YP_003357752.1| - 4.9e-43 146.9 0.0 3.1e-40 137.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA PF00004.24 gi|282165367|ref|YP_003357752.1| - 6.6e-20 71.6 0.0 2.5e-11 43.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|282165367|ref|YP_003357752.1| - 1e-18 67.4 0.0 3.5e-11 42.9 0.0 3.5 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) ClpB_D2-small PF10431.4 gi|282165367|ref|YP_003357752.1| - 4e-17 61.8 0.4 1.5e-16 60.0 0.1 2.1 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein AAA_16 PF13191.1 gi|282165367|ref|YP_003357752.1| - 7.7e-12 45.5 4.3 0.00013 22.0 0.1 5.1 2 2 3 5 5 5 2 AAA ATPase domain AAA_22 PF13401.1 gi|282165367|ref|YP_003357752.1| - 3.3e-07 30.4 2.2 0.048 13.8 0.1 4.7 4 2 0 4 4 4 2 AAA domain AAA_17 PF13207.1 gi|282165367|ref|YP_003357752.1| - 3.8e-07 30.9 0.1 0.00097 19.9 0.0 3.8 3 1 0 3 3 3 1 AAA domain AAA_14 PF13173.1 gi|282165367|ref|YP_003357752.1| - 1.1e-06 28.5 0.0 0.079 12.8 0.0 3.5 2 1 1 3 3 3 2 AAA domain Sigma54_activat PF00158.21 gi|282165367|ref|YP_003357752.1| - 2.1e-06 27.3 0.0 0.014 14.8 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_18 PF13238.1 gi|282165367|ref|YP_003357752.1| - 2.4e-05 24.6 0.1 0.031 14.5 0.0 2.8 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|282165367|ref|YP_003357752.1| - 0.00017 20.7 0.9 0.02 13.9 0.0 3.0 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|282165367|ref|YP_003357752.1| - 0.00019 20.8 0.1 0.067 12.6 0.0 2.5 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.7 gi|282165367|ref|YP_003357752.1| - 0.00022 20.9 0.1 0.0047 16.5 0.0 2.6 3 0 0 3 3 2 1 NACHT domain AAA_19 PF13245.1 gi|282165367|ref|YP_003357752.1| - 0.00055 19.6 0.1 0.27 11.0 0.1 2.7 2 0 0 2 2 2 1 Part of AAA domain Mg_chelatase PF01078.16 gi|282165367|ref|YP_003357752.1| - 0.0019 17.4 0.6 13 4.9 0.0 3.7 4 0 0 4 4 4 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|282165367|ref|YP_003357752.1| - 0.0026 17.2 0.1 1.3 8.6 0.0 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|282165367|ref|YP_003357752.1| - 0.0032 17.6 0.0 3.6 7.7 0.0 2.6 2 0 0 2 2 2 1 RNA helicase Arch_ATPase PF01637.13 gi|282165367|ref|YP_003357752.1| - 0.0032 17.1 0.4 0.084 12.5 0.0 2.9 3 1 0 3 3 3 1 Archaeal ATPase AAA_28 PF13521.1 gi|282165367|ref|YP_003357752.1| - 0.0049 16.8 0.2 5.9 6.8 0.0 3.2 3 1 1 4 4 3 0 AAA domain AAA_25 PF13481.1 gi|282165367|ref|YP_003357752.1| - 0.0068 15.8 0.1 0.38 10.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain Clp_N PF02861.15 gi|282165367|ref|YP_003357752.1| - 0.012 15.5 0.1 3 7.8 0.0 2.9 2 0 0 2 2 2 0 Clp amino terminal domain MobB PF03205.9 gi|282165367|ref|YP_003357752.1| - 0.012 15.2 0.1 2.7 7.6 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|282165367|ref|YP_003357752.1| - 0.016 14.8 0.1 1.2 8.6 0.1 2.6 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|282165367|ref|YP_003357752.1| - 0.016 14.8 0.2 10 5.7 0.0 3.4 3 0 0 3 3 3 0 Adenylylsulphate kinase SRP54 PF00448.17 gi|282165367|ref|YP_003357752.1| - 0.018 14.5 0.4 2 7.8 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|282165367|ref|YP_003357752.1| - 0.019 14.1 0.1 0.56 9.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF258 ResIII PF04851.10 gi|282165367|ref|YP_003357752.1| - 0.025 14.4 0.1 4.6 7.0 0.0 3.1 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit Zeta_toxin PF06414.7 gi|282165367|ref|YP_003357752.1| - 0.032 13.3 0.1 0.38 9.8 0.0 2.5 3 0 0 3 3 3 0 Zeta toxin Torsin PF06309.6 gi|282165367|ref|YP_003357752.1| - 0.037 13.9 0.0 0.15 11.9 0.0 2.0 3 0 0 3 3 1 0 Torsin AAA_3 PF07726.6 gi|282165367|ref|YP_003357752.1| - 0.041 13.4 0.0 4.9 6.7 0.0 3.0 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.12 gi|282165367|ref|YP_003357752.1| - 0.067 12.9 0.2 10 5.8 0.0 2.6 3 0 0 3 3 2 0 Domain of unknown function DUF87 T2SE PF00437.15 gi|282165367|ref|YP_003357752.1| - 0.091 11.6 0.0 2.6 6.8 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_23 PF13476.1 gi|282165367|ref|YP_003357752.1| - 0.091 13.0 0.0 2 8.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|282165367|ref|YP_003357752.1| - 0.1 12.6 0.1 18 5.3 0.0 2.7 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF815 PF05673.8 gi|282165367|ref|YP_003357752.1| - 0.11 11.3 0.1 0.25 10.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DEAD PF00270.24 gi|282165367|ref|YP_003357752.1| - 0.12 11.8 0.0 9.5 5.6 0.0 2.6 2 1 0 2 2 2 0 DEAD/DEAH box helicase ABC_tran PF00005.22 gi|282165367|ref|YP_003357752.1| - 0.13 12.5 0.0 15 5.8 0.0 2.5 2 0 0 2 2 2 0 ABC transporter NTPase_1 PF03266.10 gi|282165367|ref|YP_003357752.1| - 0.5 10.0 3.1 38 3.9 0.0 3.6 3 1 0 4 4 4 0 NTPase TPR_11 PF13414.1 gi|282165368|ref|YP_003357753.1| - 3e-64 212.5 28.5 9.9e-16 57.1 0.3 5.4 2 1 5 7 7 7 6 TPR repeat TPR_2 PF07719.12 gi|282165368|ref|YP_003357753.1| - 1.1e-40 134.2 12.1 1.5e-05 24.4 0.0 7.7 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282165368|ref|YP_003357753.1| - 7.8e-39 129.7 7.3 1.9e-05 24.0 0.1 7.7 7 0 0 7 7 7 6 Tetratricopeptide repeat Pkinase PF00069.20 gi|282165368|ref|YP_003357753.1| - 4.2e-36 124.4 0.0 6.1e-36 123.8 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain TPR_17 PF13431.1 gi|282165368|ref|YP_003357753.1| - 2.8e-33 111.3 9.9 3.6e-07 29.8 0.0 8.5 7 1 0 7 7 7 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282165368|ref|YP_003357753.1| - 5.4e-30 103.1 17.5 1.5e-11 44.0 0.3 4.5 2 2 2 4 4 4 4 Tetratricopeptide repeat Pkinase_Tyr PF07714.12 gi|282165368|ref|YP_003357753.1| - 1.5e-29 102.9 0.0 2e-29 102.4 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase TPR_16 PF13432.1 gi|282165368|ref|YP_003357753.1| - 4.9e-28 97.1 19.0 6.1e-10 39.4 2.9 4.8 2 1 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282165368|ref|YP_003357753.1| - 1.4e-25 87.3 19.9 3.6e-05 24.0 0.2 8.1 1 1 6 8 8 7 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|282165368|ref|YP_003357753.1| - 3.3e-21 73.3 0.1 0.018 14.7 0.0 7.5 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|282165368|ref|YP_003357753.1| - 2.5e-14 51.8 6.6 0.01 15.5 0.0 7.4 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282165368|ref|YP_003357753.1| - 9e-13 48.3 12.2 0.00026 21.2 1.0 4.8 4 1 1 5 5 4 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282165368|ref|YP_003357753.1| - 4.6e-09 36.1 7.4 0.3 11.6 0.0 7.0 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282165368|ref|YP_003357753.1| - 4.7e-08 32.6 29.1 0.02 14.8 0.5 6.2 7 0 0 7 7 6 4 Tetratricopeptide repeat TPR_20 PF14561.1 gi|282165368|ref|YP_003357753.1| - 2.5e-06 27.4 2.3 0.78 9.8 0.0 4.4 1 1 3 4 4 4 2 Tetratricopeptide repeat BTAD PF03704.12 gi|282165368|ref|YP_003357753.1| - 1.1e-05 25.7 8.9 0.075 13.3 0.1 4.0 1 1 4 5 5 5 3 Bacterial transcriptional activator domain Apc3 PF12895.2 gi|282165368|ref|YP_003357753.1| - 0.00012 22.1 0.0 0.77 9.9 0.0 3.1 2 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|282165368|ref|YP_003357753.1| - 0.00052 19.8 10.6 0.23 11.3 0.1 4.6 3 1 1 4 4 4 2 Tetratricopeptide repeat MIT PF04212.13 gi|282165368|ref|YP_003357753.1| - 0.00073 19.3 3.5 10 6.0 0.0 5.1 6 0 0 6 6 5 0 MIT (microtubule interacting and transport) domain TPR_15 PF13429.1 gi|282165368|ref|YP_003357753.1| - 0.006 15.6 0.6 2.2 7.2 0.2 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|282165368|ref|YP_003357753.1| - 0.0091 16.3 27.1 2 9.0 0.1 8.2 8 2 1 9 9 8 2 Tetratricopeptide repeat EST1_DNA_bind PF10373.4 gi|282165368|ref|YP_003357753.1| - 0.025 13.8 0.1 1.8 7.7 0.1 2.6 1 1 0 2 2 2 0 Est1 DNA/RNA binding domain DUF3856 PF12968.2 gi|282165368|ref|YP_003357753.1| - 0.038 13.8 0.7 39 4.0 0.0 4.4 3 3 2 5 5 5 0 Domain of Unknown Function (DUF3856) FAT PF02259.18 gi|282165368|ref|YP_003357753.1| - 0.18 10.7 0.0 13 4.6 0.0 2.3 2 1 0 2 2 2 0 FAT domain ALS_ss_C PF10369.4 gi|282165369|ref|YP_003357754.1| - 4.2e-33 112.8 4.4 3.5e-32 109.9 0.6 2.2 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|282165369|ref|YP_003357754.1| - 1.8e-19 69.2 0.3 5e-19 67.8 0.1 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|282165369|ref|YP_003357754.1| - 2e-15 55.8 3.0 2.6e-15 55.5 0.1 2.4 2 1 1 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|282165369|ref|YP_003357754.1| - 0.00013 22.2 4.3 0.00025 21.3 0.4 2.2 2 0 0 2 2 2 1 ACT domain NIL PF09383.5 gi|282165369|ref|YP_003357754.1| - 0.045 13.3 0.1 6.2 6.4 0.0 2.5 2 1 0 2 2 2 0 NIL domain TPP_enzyme_N PF02776.13 gi|282165370|ref|YP_003357755.1| - 5.5e-61 205.0 0.1 5.5e-61 205.0 0.1 2.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|282165370|ref|YP_003357755.1| - 7.5e-54 181.4 0.1 4.6e-53 178.9 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|282165370|ref|YP_003357755.1| - 7.5e-52 174.7 0.1 1.5e-51 173.7 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|282165370|ref|YP_003357755.1| - 0.025 14.0 0.3 0.053 13.0 0.2 1.5 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Dala_Dala_lig_C PF07478.8 gi|282165370|ref|YP_003357755.1| - 0.13 11.6 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus HMGL-like PF00682.14 gi|282165371|ref|YP_003357756.1| - 2.5e-71 240.0 0.7 4.5e-71 239.2 0.2 1.6 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|282165371|ref|YP_003357756.1| - 1.2e-35 122.1 0.2 2.2e-35 121.3 0.1 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain CarboxypepD_reg PF13620.1 gi|282165372|ref|YP_003357757.1| - 7.8e-11 41.8 4.0 7.8e-11 41.8 2.8 2.4 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282165372|ref|YP_003357757.1| - 2.5e-07 30.6 0.7 2.5e-07 30.6 0.5 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) DUF3823 PF12866.2 gi|282165372|ref|YP_003357757.1| - 0.00018 21.0 0.0 0.00033 20.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3823) Cna_B PF05738.8 gi|282165372|ref|YP_003357757.1| - 0.0059 16.3 0.2 0.018 14.7 0.1 1.8 1 0 0 1 1 1 1 Cna protein B-type domain Dehydratase_LU PF02286.10 gi|282165372|ref|YP_003357757.1| - 0.03 12.5 0.0 0.04 12.1 0.0 1.1 1 0 0 1 1 1 0 Dehydratase large subunit DUF3869 PF12985.2 gi|282165372|ref|YP_003357757.1| - 0.036 14.4 4.4 0.34 11.3 0.3 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF3869) fn3_3 PF14686.1 gi|282165372|ref|YP_003357757.1| - 0.041 13.9 0.1 0.041 13.9 0.1 2.3 3 1 1 4 4 4 0 Polysaccharide lyase family 4, domain II phage_tail_N PF08400.5 gi|282165372|ref|YP_003357757.1| - 0.24 11.1 2.0 0.56 9.9 0.4 2.3 3 0 0 3 3 3 0 Prophage tail fibre N-terminal Big_1 PF02369.11 gi|282165372|ref|YP_003357757.1| - 0.48 10.3 5.5 0.57 10.1 0.2 3.0 1 1 2 3 3 3 0 Bacterial Ig-like domain (group 1) Rubrerythrin PF02915.12 gi|282165373|ref|YP_003357758.1| - 3.3e-09 37.1 1.9 4e-09 36.9 1.3 1.1 1 0 0 1 1 1 1 Rubrerythrin Mn_catalase PF05067.7 gi|282165373|ref|YP_003357758.1| - 0.00011 21.0 0.2 0.00013 20.8 0.1 1.0 1 0 0 1 1 1 1 Manganese containing catalase COQ7 PF03232.8 gi|282165373|ref|YP_003357758.1| - 0.00085 18.8 0.1 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 DUF2383 PF09537.5 gi|282165373|ref|YP_003357758.1| - 0.0039 17.4 0.6 0.007 16.5 0.3 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.19 gi|282165373|ref|YP_003357758.1| - 0.015 15.0 0.6 0.015 15.0 0.4 1.6 1 1 1 2 2 2 0 Ferritin-like domain DUF4423 PF14394.1 gi|282165373|ref|YP_003357758.1| - 0.052 13.0 0.1 0.057 12.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Glycos_transf_2 PF00535.21 gi|282165374|ref|YP_003357759.1| - 2.7e-20 72.7 0.1 3.5e-20 72.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282165374|ref|YP_003357759.1| - 1.5e-09 38.0 0.0 2.3e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF2569 PF10754.4 gi|282165374|ref|YP_003357759.1| - 0.037 14.2 0.1 0.059 13.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) Glyco_tranf_2_4 PF13704.1 gi|282165374|ref|YP_003357759.1| - 0.081 13.2 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Tweety PF04906.8 gi|282165374|ref|YP_003357759.1| - 0.12 10.8 0.0 0.17 10.2 0.0 1.1 1 0 0 1 1 1 0 Tweety CofC PF01983.11 gi|282165374|ref|YP_003357759.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like STT3 PF02516.9 gi|282165375|ref|YP_003357760.1| - 1.1e-29 103.7 44.3 5.8e-29 101.3 28.7 2.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|282165375|ref|YP_003357760.1| - 1.2e-05 25.2 1.5 1.2e-05 25.2 1.1 5.5 5 1 1 6 6 6 2 Dolichyl-phosphate-mannose-protein mannosyltransferase 120_Rick_ant PF12574.3 gi|282165375|ref|YP_003357760.1| - 0.044 12.8 0.1 0.075 12.1 0.0 1.2 1 0 0 1 1 1 0 120 KDa Rickettsia surface antigen Glycos_transf_1 PF00534.15 gi|282165376|ref|YP_003357761.1| - 2.4e-16 59.6 0.0 3.7e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282165376|ref|YP_003357761.1| - 1.8e-10 41.2 0.1 6.1e-10 39.4 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|282165376|ref|YP_003357761.1| - 4.8e-09 36.4 0.1 1.1e-08 35.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282165376|ref|YP_003357761.1| - 3.9e-06 26.7 0.2 9e-06 25.5 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|282165376|ref|YP_003357761.1| - 0.00055 19.7 0.0 0.0009 19.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|282165377|ref|YP_003357762.1| - 2.8e-28 98.4 0.0 4.8e-28 97.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282165377|ref|YP_003357762.1| - 2e-25 89.7 0.0 5.5e-25 88.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|282165377|ref|YP_003357762.1| - 1.3e-24 86.9 0.0 1.9e-24 86.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|282165377|ref|YP_003357762.1| - 1.3e-12 48.0 0.1 4.4e-12 46.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|282165377|ref|YP_003357762.1| - 7.2e-09 35.5 0.0 1.2e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|282165377|ref|YP_003357762.1| - 4.7e-05 22.9 0.4 0.065 12.7 0.0 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain NAD_binding_3 PF03447.11 gi|282165377|ref|YP_003357762.1| - 0.12 12.7 0.1 0.27 11.6 0.1 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain ArgK PF03308.11 gi|282165377|ref|YP_003357762.1| - 0.13 10.9 0.0 0.24 10.1 0.0 1.4 1 0 0 1 1 1 0 ArgK protein Glycos_transf_1 PF00534.15 gi|282165378|ref|YP_003357763.1| - 1.1e-30 106.2 0.0 2.4e-30 105.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282165378|ref|YP_003357763.1| - 6.5e-19 68.4 0.1 1.4e-18 67.2 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282165378|ref|YP_003357763.1| - 1.1e-13 51.6 0.1 1.9e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|282165378|ref|YP_003357763.1| - 7.1e-11 42.1 0.0 1.2e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|282165378|ref|YP_003357763.1| - 1.6e-06 28.2 0.0 3.5e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|282165379|ref|YP_003357764.1| - 1.4e-24 86.7 0.0 2.2e-24 86.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|282165379|ref|YP_003357764.1| - 4.9e-19 69.0 0.0 6.7e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|282165379|ref|YP_003357764.1| - 0.00013 21.2 0.0 0.00061 19.0 0.0 1.8 1 1 1 2 2 2 1 Glycosyltransferase like family Glyco_transf_21 PF13506.1 gi|282165379|ref|YP_003357764.1| - 0.00081 18.7 0.0 0.0011 18.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|282165379|ref|YP_003357764.1| - 0.0062 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|282165379|ref|YP_003357764.1| - 0.021 15.1 0.0 0.052 13.8 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|282165380|ref|YP_003357765.1| - 5.5e-36 123.5 0.0 8.8e-36 122.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|282165380|ref|YP_003357765.1| - 1.2e-15 57.8 0.0 3.8e-15 56.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|282165380|ref|YP_003357765.1| - 3.3e-08 33.8 0.0 1e-07 32.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|282165380|ref|YP_003357765.1| - 6.5e-08 32.7 0.0 1.4e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|282165380|ref|YP_003357765.1| - 2.3e-06 27.4 0.0 5.2e-06 26.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Epimerase_2 PF02350.14 gi|282165380|ref|YP_003357765.1| - 0.13 11.0 0.0 0.63 8.7 0.0 1.8 1 1 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Polysacc_synt PF01943.12 gi|282165381|ref|YP_003357766.1| - 3.5e-40 138.0 34.8 3.5e-40 138.0 24.1 2.8 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|282165381|ref|YP_003357766.1| - 3.7e-19 68.9 25.2 3.7e-19 68.9 17.5 3.7 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|282165381|ref|YP_003357766.1| - 1e-10 41.5 28.7 1e-10 41.5 19.9 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|282165381|ref|YP_003357766.1| - 4.3e-08 32.0 43.8 4.3e-08 32.0 30.4 1.8 1 1 0 2 2 2 1 MviN-like protein SieB PF14163.1 gi|282165381|ref|YP_003357766.1| - 8.7 5.9 14.8 4.1 6.9 1.3 2.9 2 0 0 2 2 2 0 Superinfection exclusion protein B PMT_2 PF13231.1 gi|282165382|ref|YP_003357767.1| - 8.3e-30 103.7 17.4 8.3e-30 103.7 12.0 2.9 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Epimerase PF01370.16 gi|282165384|ref|YP_003357769.1| - 3.2e-56 190.4 0.0 4.2e-56 190.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|282165384|ref|YP_003357769.1| - 2.4e-10 39.6 0.0 6.4e-09 34.9 0.0 2.2 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|282165384|ref|YP_003357769.1| - 6.7e-06 26.2 0.0 1.9e-05 24.7 0.0 1.8 2 1 0 2 2 2 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|282165384|ref|YP_003357769.1| - 2.1e-05 23.5 0.2 0.051 12.4 0.0 3.0 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|282165384|ref|YP_003357769.1| - 0.00022 20.2 0.0 0.00047 19.1 0.0 1.5 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|282165384|ref|YP_003357769.1| - 0.00067 18.6 0.1 0.062 12.2 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|282165384|ref|YP_003357769.1| - 0.069 13.0 0.1 0.16 11.9 0.1 1.6 1 1 0 1 1 1 0 short chain dehydrogenase Epimerase PF01370.16 gi|282165385|ref|YP_003357770.1| - 2e-62 210.7 0.0 2.4e-62 210.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|282165385|ref|YP_003357770.1| - 2.3e-07 29.9 0.0 3.5e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|282165385|ref|YP_003357770.1| - 0.0011 17.9 0.0 0.0021 17.0 0.0 1.4 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|282165385|ref|YP_003357770.1| - 0.0028 17.7 0.0 0.0062 16.5 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding Epimerase_Csub PF13950.1 gi|282165385|ref|YP_003357770.1| - 0.0087 15.9 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit dTDP_sugar_isom PF00908.12 gi|282165386|ref|YP_003357771.1| - 1.3e-10 40.8 0.0 1.5e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|282165386|ref|YP_003357771.1| - 5.5e-09 35.6 0.0 7e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.6 gi|282165386|ref|YP_003357771.1| - 0.00071 19.0 0.0 0.22 11.0 0.0 2.3 2 0 0 2 2 2 2 Cupin domain Epimerase PF01370.16 gi|282165387|ref|YP_003357772.1| - 9.2e-67 224.9 0.0 1.1e-66 224.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|282165387|ref|YP_003357772.1| - 2.6e-21 75.7 0.0 3e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|282165387|ref|YP_003357772.1| - 6.1e-17 61.2 0.0 8.2e-17 60.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|282165387|ref|YP_003357772.1| - 8.5e-16 57.6 0.0 7.6e-15 54.5 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|282165387|ref|YP_003357772.1| - 3.1e-15 55.8 0.0 1.1e-14 54.0 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|282165387|ref|YP_003357772.1| - 2.8e-05 24.1 0.0 4.4e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|282165387|ref|YP_003357772.1| - 6.1e-05 23.0 0.3 0.00027 20.8 0.2 1.8 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|282165387|ref|YP_003357772.1| - 0.019 14.6 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 KR domain Ldh_1_N PF00056.18 gi|282165387|ref|YP_003357772.1| - 0.024 14.4 0.1 0.042 13.6 0.1 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Skp1 PF01466.14 gi|282165387|ref|YP_003357772.1| - 0.069 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Skp1 family, dimerisation domain NTP_transferase PF00483.18 gi|282165388|ref|YP_003357773.1| - 7.7e-58 195.7 0.0 9.2e-58 195.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|282165388|ref|YP_003357773.1| - 7.2e-13 48.9 0.0 9.9e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|282165388|ref|YP_003357773.1| - 4e-10 38.7 14.3 1.1e-05 24.6 0.6 4.2 5 0 0 5 5 5 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|282165388|ref|YP_003357773.1| - 1.5e-09 37.2 16.9 1.1e-06 28.0 0.3 5.2 5 0 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase RmlD_sub_bind PF04321.12 gi|282165389|ref|YP_003357774.1| - 3.4e-74 249.3 0.0 3.9e-74 249.1 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|282165389|ref|YP_003357774.1| - 3.3e-24 85.6 0.1 4.2e-24 85.2 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|282165389|ref|YP_003357774.1| - 1.7e-12 46.6 0.2 3.3e-12 45.7 0.1 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|282165389|ref|YP_003357774.1| - 1.3e-11 44.0 0.3 3.9e-11 42.4 0.1 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|282165389|ref|YP_003357774.1| - 1.2e-09 37.5 0.0 2.1e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein Epimerase PF01370.16 gi|282165390|ref|YP_003357775.1| - 2.6e-51 174.3 0.0 3e-51 174.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|282165390|ref|YP_003357775.1| - 4.1e-13 48.6 0.0 6.2e-13 48.0 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|282165390|ref|YP_003357775.1| - 9.4e-13 47.6 0.0 1.3e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|282165390|ref|YP_003357775.1| - 6.2e-12 45.0 0.0 7.2e-06 25.1 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|282165390|ref|YP_003357775.1| - 6.2e-09 35.1 0.1 8.8e-05 21.5 0.0 2.1 1 1 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|282165390|ref|YP_003357775.1| - 7.7e-05 22.6 0.0 0.00024 21.0 0.0 1.8 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|282165390|ref|YP_003357775.1| - 0.002 18.1 0.0 0.0025 17.8 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|282165390|ref|YP_003357775.1| - 0.026 14.2 0.0 0.049 13.2 0.0 1.4 1 0 0 1 1 1 0 KR domain NTP_transferase PF00483.18 gi|282165391|ref|YP_003357776.1| - 1e-35 123.2 0.0 1.2e-35 122.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|282165391|ref|YP_003357776.1| - 6.3e-12 45.8 0.0 8.5e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|282165391|ref|YP_003357776.1| - 1.4e-05 24.7 0.0 0.00024 20.7 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep PF00132.19 gi|282165391|ref|YP_003357776.1| - 0.00074 18.9 9.4 0.017 14.5 1.3 4.4 1 1 2 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.7 gi|282165391|ref|YP_003357776.1| - 0.068 11.7 0.9 0.1 11.1 0.6 1.2 1 0 0 1 1 1 0 L-fucokinase Hexapep_2 PF14602.1 gi|282165391|ref|YP_003357776.1| - 0.39 10.3 7.8 0.09 12.3 0.5 3.3 3 1 1 4 4 4 0 Hexapeptide repeat of succinyl-transferase PQQ_3 PF13570.1 gi|282165392|ref|YP_003357777.1| - 4.2e-69 227.1 41.2 1.5e-09 37.7 0.1 8.7 9 0 0 9 9 9 8 PQQ-like domain PQQ_2 PF13360.1 gi|282165392|ref|YP_003357777.1| - 2e-62 210.7 19.0 2.3e-20 73.0 0.7 4.2 1 1 4 5 5 5 5 PQQ-like domain PQQ PF01011.16 gi|282165392|ref|YP_003357777.1| - 2.9e-43 143.3 25.4 7.8e-09 34.6 0.1 8.1 9 0 0 9 9 9 7 PQQ enzyme repeat Arylsulfotrans PF05935.6 gi|282165392|ref|YP_003357777.1| - 0.0045 15.5 0.1 0.041 12.3 0.1 2.2 2 1 1 3 3 3 1 Arylsulfotransferase (ASST) PsbP PF01789.11 gi|282165392|ref|YP_003357777.1| - 0.014 14.8 0.1 2.4 7.5 0.0 3.7 3 1 1 4 4 4 0 PsbP Reg_prop PF07494.6 gi|282165392|ref|YP_003357777.1| - 0.1 12.7 4.2 21 5.5 0.0 5.3 7 0 0 7 7 7 0 Two component regulator propeller STT3 PF02516.9 gi|282165393|ref|YP_003357778.1| - 1.4e-32 113.3 34.3 3.2e-32 112.1 23.8 1.8 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|282165393|ref|YP_003357778.1| - 9.9e-06 25.5 11.7 9.9e-06 25.5 8.1 3.8 2 2 2 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Dpy19 PF10034.4 gi|282165393|ref|YP_003357778.1| - 0.029 12.5 0.1 0.048 11.8 0.1 1.3 1 0 0 1 1 1 0 Q-cell neuroblast polarisation Dyp_perox PF04261.7 gi|282165393|ref|YP_003357778.1| - 0.048 12.3 0.0 0.078 11.7 0.0 1.2 1 0 0 1 1 1 0 Dyp-type peroxidase family DUF1628 PF07790.6 gi|282165394|ref|YP_003357779.1| - 0.026 15.2 1.2 0.039 14.6 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) VKOR PF07884.9 gi|282165394|ref|YP_003357779.1| - 0.057 13.2 0.1 0.092 12.5 0.1 1.4 1 0 0 1 1 1 0 Vitamin K epoxide reductase family PsbI PF02532.9 gi|282165394|ref|YP_003357779.1| - 0.54 9.9 2.6 0.92 9.1 1.8 1.3 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) Radical_SAM PF04055.16 gi|282165395|ref|YP_003357780.1| - 2.5e-22 79.8 0.1 4.2e-22 79.0 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|282165395|ref|YP_003357780.1| - 3.1e-07 30.6 0.0 9.3e-07 29.0 0.0 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|282165395|ref|YP_003357780.1| - 1.2e-05 25.4 0.0 2.4e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|282165395|ref|YP_003357780.1| - 8e-05 22.6 0.0 0.00015 21.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|282165395|ref|YP_003357780.1| - 0.16 11.2 0.0 0.64 9.2 0.0 1.8 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF2207 PF09972.4 gi|282165396|ref|YP_003357781.1| - 3.4e-06 25.9 0.0 7.6e-06 24.7 0.0 1.5 2 0 0 2 2 2 1 Predicted membrane protein (DUF2207) DUF2108 PF09881.4 gi|282165396|ref|YP_003357781.1| - 0.1 12.4 0.7 1.9 8.3 0.0 2.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) DUF1469 PF07332.6 gi|282165397|ref|YP_003357782.1| - 0.00018 21.2 6.0 0.00023 20.8 4.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) DUF1129 PF06570.6 gi|282165397|ref|YP_003357782.1| - 0.0083 15.4 3.3 0.01 15.1 1.9 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1129) DUF4131 PF13567.1 gi|282165397|ref|YP_003357782.1| - 0.0086 15.5 0.2 0.0099 15.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) ABC_membrane PF00664.18 gi|282165397|ref|YP_003357782.1| - 0.012 14.9 0.2 0.014 14.8 0.2 1.2 1 0 0 1 1 1 0 ABC transporter transmembrane region DUF3366 PF11846.3 gi|282165397|ref|YP_003357782.1| - 0.026 14.3 0.2 0.033 14.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3366) Radical_SAM PF04055.16 gi|282165397|ref|YP_003357782.1| - 0.035 14.2 0.0 0.04 14.0 0.0 1.1 1 0 0 1 1 1 0 Radical SAM superfamily Ribosomal_S20p PF01649.13 gi|282165397|ref|YP_003357782.1| - 0.062 13.6 0.2 0.088 13.1 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein S20 YtpI PF14007.1 gi|282165397|ref|YP_003357782.1| - 0.063 13.2 3.9 0.095 12.6 2.7 1.2 1 0 0 1 1 1 0 YtpI-like protein DUF2427 PF10348.4 gi|282165397|ref|YP_003357782.1| - 0.081 12.5 1.1 0.12 12.0 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) FA_desaturase PF00487.19 gi|282165397|ref|YP_003357782.1| - 0.13 11.6 0.8 0.16 11.3 0.6 1.1 1 0 0 1 1 1 0 Fatty acid desaturase Phage_HK97_TLTM PF06120.6 gi|282165397|ref|YP_003357782.1| - 0.18 11.1 1.0 0.24 10.7 0.7 1.3 1 1 0 1 1 1 0 Tail length tape measure protein COPI_assoc PF08507.5 gi|282165397|ref|YP_003357782.1| - 0.22 11.1 3.3 0.61 9.7 0.8 2.1 1 1 1 2 2 2 0 COPI associated protein TraQ PF09679.5 gi|282165397|ref|YP_003357782.1| - 0.28 11.1 1.3 2.9 7.8 0.6 2.1 1 1 1 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) RseC_MucC PF04246.7 gi|282165397|ref|YP_003357782.1| - 3.2 7.3 8.2 3.6 7.1 4.1 1.9 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC CTP_transf_1 PF01148.15 gi|282165398|ref|YP_003357783.1| - 8.5e-15 55.1 12.1 3.9e-13 49.6 2.0 2.1 1 1 1 2 2 2 2 Cytidylyltransferase family AIRS_C PF02769.17 gi|282165399|ref|YP_003357784.1| - 2.4e-23 82.8 0.0 4e-23 82.1 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|282165399|ref|YP_003357784.1| - 1.7e-17 63.4 1.3 2.3e-17 63.0 0.3 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain RRM_1 PF00076.17 gi|282165399|ref|YP_003357784.1| - 0.086 12.4 0.0 0.29 10.7 0.0 1.9 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HTH_3 PF01381.17 gi|282165400|ref|YP_003357785.1| - 1.1e-16 60.4 0.0 1.2e-16 60.2 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|282165400|ref|YP_003357785.1| - 5e-15 55.2 0.0 5.8e-15 55.0 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|282165400|ref|YP_003357785.1| - 3.9e-11 42.9 0.0 4e-11 42.9 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|282165400|ref|YP_003357785.1| - 1.2e-05 24.8 0.0 1.4e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|282165400|ref|YP_003357785.1| - 4.7e-05 23.4 0.0 5.6e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.1 gi|282165400|ref|YP_003357785.1| - 0.00014 21.5 0.0 0.00019 21.1 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|282165400|ref|YP_003357785.1| - 0.0032 17.0 0.1 0.0046 16.5 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|282165400|ref|YP_003357785.1| - 0.0042 16.4 0.1 0.0073 15.6 0.0 1.5 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|282165400|ref|YP_003357785.1| - 0.012 14.9 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|282165400|ref|YP_003357785.1| - 0.016 14.7 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|282165400|ref|YP_003357785.1| - 0.027 14.1 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF1323 PF07037.6 gi|282165400|ref|YP_003357785.1| - 0.051 13.7 0.1 0.071 13.2 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_23 PF13384.1 gi|282165400|ref|YP_003357785.1| - 0.054 13.1 0.0 0.073 12.7 0.0 1.2 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|282165400|ref|YP_003357785.1| - 0.084 12.4 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_37 PF13744.1 gi|282165400|ref|YP_003357785.1| - 0.1 12.4 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain PIG-F PF06699.6 gi|282165401|ref|YP_003357786.1| - 1.8e-05 24.8 2.8 2.1e-05 24.5 1.9 1.0 1 0 0 1 1 1 1 GPI biosynthesis protein family Pig-F DUF2178 PF09946.4 gi|282165401|ref|YP_003357786.1| - 0.00047 19.8 8.0 0.0014 18.3 5.5 1.8 1 1 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF3796 PF12676.2 gi|282165401|ref|YP_003357786.1| - 0.0052 17.0 3.7 0.027 14.7 0.1 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF3796) SirB PF04247.7 gi|282165401|ref|YP_003357786.1| - 0.019 14.7 2.0 0.03 14.0 1.4 1.3 1 0 0 1 1 1 0 Invasion gene expression up-regulator, SirB DUF2232 PF09991.4 gi|282165401|ref|YP_003357786.1| - 0.087 11.8 10.9 0.05 12.5 1.3 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2232) DUF1673 PF07895.6 gi|282165401|ref|YP_003357786.1| - 0.13 11.7 2.4 0.15 11.5 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF4203 PF13886.1 gi|282165401|ref|YP_003357786.1| - 0.18 11.2 11.6 0.48 9.8 8.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4203) Sec61_beta PF03911.11 gi|282165401|ref|YP_003357786.1| - 0.27 11.0 0.4 0.27 11.0 0.3 3.1 4 0 0 4 4 4 0 Sec61beta family HXXEE PF13787.1 gi|282165401|ref|YP_003357786.1| - 0.41 11.0 7.4 3.3 8.1 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function with HXXEE motif DUF4229 PF14012.1 gi|282165401|ref|YP_003357786.1| - 0.42 10.5 10.9 0.59 10.0 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) ATP_synt_I PF03899.10 gi|282165401|ref|YP_003357786.1| - 0.84 9.8 11.6 0.51 10.5 6.4 1.8 1 1 0 1 1 1 0 ATP synthase I chain OppC_N PF12911.2 gi|282165401|ref|YP_003357786.1| - 1.4 8.3 6.2 8.3 5.8 0.3 3.1 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C EphA2_TM PF14575.1 gi|282165401|ref|YP_003357786.1| - 1.5 9.3 0.0 1.5 9.3 0.0 2.4 2 1 1 3 3 3 0 Ephrin type-A receptor 2 transmembrane domain DUF3040 PF11239.3 gi|282165401|ref|YP_003357786.1| - 1.6 8.8 9.8 2.1 8.4 2.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Trp_oprn_chp PF09534.5 gi|282165401|ref|YP_003357786.1| - 3.3 7.2 7.2 3.9 7.0 5.0 1.2 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF4131 PF13567.1 gi|282165401|ref|YP_003357786.1| - 4.6 6.6 13.1 0.085 12.2 1.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) O-antigen_lig PF13425.1 gi|282165401|ref|YP_003357786.1| - 6.7 6.6 11.1 28 4.7 7.7 2.0 1 1 0 1 1 1 0 O-antigen ligase like membrane protein PBP PF01161.15 gi|282165402|ref|YP_003357787.1| - 2e-43 147.7 0.0 2.2e-43 147.5 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein OrfB_Zn_ribbon PF07282.6 gi|282165403|ref|YP_003357788.1| - 0.023 14.3 0.2 0.046 13.3 0.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|282165403|ref|YP_003357788.1| - 0.058 13.1 0.7 0.094 12.4 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ISL3 PF14690.1 gi|282165403|ref|YP_003357788.1| - 0.083 12.9 5.0 0.69 9.9 0.6 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_S27e PF01667.12 gi|282165403|ref|YP_003357788.1| - 0.11 12.0 0.3 0.19 11.3 0.2 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 zf-IS66 PF13005.2 gi|282165404|ref|YP_003357789.1| - 0.015 15.2 0.5 2.6 8.1 0.2 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|282165404|ref|YP_003357789.1| - 0.015 14.5 0.2 0.028 13.7 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.2 gi|282165404|ref|YP_003357789.1| - 0.025 14.4 0.2 0.052 13.3 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|282165404|ref|YP_003357789.1| - 0.042 13.0 2.0 3.2 7.1 0.3 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|282165404|ref|YP_003357789.1| - 0.056 12.9 1.1 0.17 11.4 0.8 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|282165404|ref|YP_003357789.1| - 0.07 13.4 1.6 0.21 11.9 1.1 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar MHC_I_2 PF14586.1 gi|282165404|ref|YP_003357789.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Class I Histocompatibility antigen, NKG2D ligand, domains 1 and 2 Cys_rich_CPXG PF14255.1 gi|282165404|ref|YP_003357789.1| - 0.14 11.9 0.6 14 5.5 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF4282 PF14110.1 gi|282165404|ref|YP_003357789.1| - 0.26 11.5 2.1 0.5 10.5 1.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) Adeno_E3_CR2 PF02439.10 gi|282165404|ref|YP_003357789.1| - 3.3 7.3 6.5 1 8.9 1.6 2.1 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 Ribosomal_S27e PF01667.12 gi|282165405|ref|YP_003357790.1| - 0.073 12.6 0.1 0.15 11.5 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein S27 zinc_ribbon_2 PF13240.1 gi|282165405|ref|YP_003357790.1| - 0.081 12.4 4.1 0.16 11.4 2.8 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|282165405|ref|YP_003357790.1| - 0.11 11.6 3.3 0.4 9.9 2.4 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|282165405|ref|YP_003357790.1| - 3.3 7.3 5.3 63 3.2 2.2 2.7 2 1 0 2 2 2 0 zinc-ribbon domain Band_7_1 PF13421.1 gi|282165406|ref|YP_003357791.1| - 4.6e-37 127.5 0.5 5.6e-37 127.3 0.3 1.1 1 0 0 1 1 1 1 SPFH domain-Band 7 family DZR PF12773.2 gi|282165406|ref|YP_003357791.1| - 1.8e-20 72.4 33.5 3.2e-12 46.0 7.3 2.2 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|282165406|ref|YP_003357791.1| - 1.5e-17 62.4 30.7 1.3e-06 27.6 2.4 3.3 3 0 0 3 3 3 3 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|282165406|ref|YP_003357791.1| - 4.9e-17 60.5 36.2 1.1e-06 27.6 3.9 3.3 2 1 1 3 3 3 3 zinc-ribbon domain Band_7 PF01145.20 gi|282165406|ref|YP_003357791.1| - 0.0001 22.2 0.6 0.00015 21.7 0.4 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family UPF0547 PF10571.4 gi|282165406|ref|YP_003357791.1| - 0.02 14.5 29.3 0.1 12.3 2.8 3.5 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-C3HC4_3 PF13920.1 gi|282165406|ref|YP_003357791.1| - 0.05 13.2 16.6 5.6 6.7 0.4 3.2 1 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|282165406|ref|YP_003357791.1| - 0.78 9.5 21.3 1.9 8.2 1.7 3.3 1 1 2 3 3 3 0 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.6 gi|282165406|ref|YP_003357791.1| - 0.78 9.2 23.7 1.2 8.7 1.0 4.1 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain DUF3279 PF11682.3 gi|282165406|ref|YP_003357791.1| - 1.1 8.7 12.9 8.7 5.9 0.3 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3279) zf-DHHC PF01529.15 gi|282165406|ref|YP_003357791.1| - 3.4 7.0 11.3 17 4.7 0.2 3.2 1 1 2 3 3 3 0 DHHC palmitoyltransferase NOB1_Zn_bind PF08772.6 gi|282165406|ref|YP_003357791.1| - 4.7 7.1 25.4 2.9 7.8 3.4 3.5 1 1 2 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like RecR PF02132.10 gi|282165406|ref|YP_003357791.1| - 5.1 6.6 9.0 13 5.2 0.0 3.6 3 0 0 3 3 3 0 RecR protein Gmad2 PF10648.4 gi|282165407|ref|YP_003357792.1| - 0.12 12.5 0.1 0.26 11.4 0.1 1.6 1 0 0 1 1 1 0 Immunoglobulin-like domain of bacterial spore germination Cytochrom_C_2 PF01322.15 gi|282165407|ref|YP_003357792.1| - 0.25 11.8 4.6 0.37 11.3 2.7 1.8 1 1 0 1 1 1 0 Cytochrome C' Grp1_Fun34_YaaH PF01184.14 gi|282165408|ref|YP_003357793.1| - 5.6e-58 195.6 20.8 6.9e-58 195.3 14.4 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Rhodanese PF00581.15 gi|282165409|ref|YP_003357794.1| - 2.3e-21 76.2 0.0 2.7e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain MFS_1 PF07690.11 gi|282165410|ref|YP_003357795.1| - 5e-17 61.6 36.7 5e-17 61.6 25.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Tmemb_55A PF09788.4 gi|282165410|ref|YP_003357795.1| - 2.6 7.1 3.6 0.82 8.7 0.1 1.8 2 0 0 2 2 2 0 Transmembrane protein 55A Tail_P2_I PF09684.5 gi|282165411|ref|YP_003357796.1| - 0.028 13.9 0.0 0.028 13.9 0.0 1.1 1 0 0 1 1 1 0 Phage tail protein (Tail_P2_I) ACT_5 PF13710.1 gi|282165411|ref|YP_003357796.1| - 0.037 13.8 0.0 0.049 13.4 0.0 1.2 1 0 0 1 1 1 0 ACT domain SBP_bac_3 PF00497.15 gi|282165412|ref|YP_003357797.1| - 1.7e-64 217.1 1.6 2e-64 216.9 1.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|282165412|ref|YP_003357797.1| - 1.1e-05 25.1 0.4 1.9e-05 24.3 0.3 1.3 1 0 0 1 1 1 1 NMT1/THI5 like DUF1180 PF06679.7 gi|282165412|ref|YP_003357797.1| - 0.064 13.1 1.2 0.11 12.4 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) BPD_transp_1 PF00528.17 gi|282165413|ref|YP_003357798.1| - 6e-18 65.0 8.2 6e-18 65.0 5.7 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PEGA PF08308.6 gi|282165413|ref|YP_003357798.1| - 3.1e-13 49.3 0.3 1.6e-07 30.9 0.0 2.5 2 0 0 2 2 2 2 PEGA domain CarboxypepD_reg PF13620.1 gi|282165413|ref|YP_003357798.1| - 1.5e-08 34.5 5.2 0.00015 21.7 0.3 2.7 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282165413|ref|YP_003357798.1| - 4.3e-06 26.6 1.1 0.054 13.5 0.1 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF4480) BetaGal_dom4_5 PF13364.1 gi|282165413|ref|YP_003357798.1| - 0.12 12.7 0.1 0.33 11.2 0.0 1.8 2 0 0 2 2 2 0 Beta-galactosidase jelly roll domain ABC_tran PF00005.22 gi|282165414|ref|YP_003357799.1| - 2.4e-38 131.5 0.2 3.2e-38 131.1 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282165414|ref|YP_003357799.1| - 1.4e-14 54.7 0.0 3e-08 33.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|282165414|ref|YP_003357799.1| - 8.9e-11 41.4 1.4 7.8e-10 38.3 1.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|282165414|ref|YP_003357799.1| - 3.2e-06 27.0 0.2 1.6e-05 24.7 0.1 1.9 1 1 0 1 1 1 1 Archaeal ATPase AAA_15 PF13175.1 gi|282165414|ref|YP_003357799.1| - 5.2e-06 25.7 0.0 0.051 12.6 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|282165414|ref|YP_003357799.1| - 9.4e-06 25.7 0.0 1.3e-05 25.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|282165414|ref|YP_003357799.1| - 1.3e-05 25.3 0.2 0.00011 22.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|282165414|ref|YP_003357799.1| - 1.6e-05 24.5 0.2 0.0074 15.7 0.0 2.2 1 1 1 2 2 2 2 AAA-like domain AAA_23 PF13476.1 gi|282165414|ref|YP_003357799.1| - 1.8e-05 25.2 0.2 5.5e-05 23.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|282165414|ref|YP_003357799.1| - 2.7e-05 23.6 0.0 5.9e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|282165414|ref|YP_003357799.1| - 4.8e-05 22.1 1.5 0.047 12.2 0.0 2.3 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_18 PF13238.1 gi|282165414|ref|YP_003357799.1| - 0.00019 21.7 0.0 0.015 15.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|282165414|ref|YP_003357799.1| - 0.00072 19.2 0.1 0.0028 17.3 0.0 2.0 2 1 0 2 2 2 1 Part of AAA domain AAA PF00004.24 gi|282165414|ref|YP_003357799.1| - 0.00081 19.6 0.9 0.021 15.0 0.6 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|282165414|ref|YP_003357799.1| - 0.001 18.2 0.0 0.0015 17.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|282165414|ref|YP_003357799.1| - 0.0011 18.8 0.0 0.065 13.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|282165414|ref|YP_003357799.1| - 0.0013 17.6 0.3 0.029 13.2 0.2 2.1 1 1 0 1 1 1 1 NB-ARC domain AAA_5 PF07728.9 gi|282165414|ref|YP_003357799.1| - 0.0038 16.9 0.5 0.82 9.3 0.0 2.4 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|282165414|ref|YP_003357799.1| - 0.004 16.6 0.3 0.011 15.2 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_13 PF13166.1 gi|282165414|ref|YP_003357799.1| - 0.0058 15.1 0.0 0.21 9.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|282165414|ref|YP_003357799.1| - 0.008 15.5 0.1 0.049 13.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain G-alpha PF00503.15 gi|282165414|ref|YP_003357799.1| - 0.0085 14.8 0.0 0.02 13.6 0.0 1.3 1 1 0 1 1 1 1 G-protein alpha subunit AAA_17 PF13207.1 gi|282165414|ref|YP_003357799.1| - 0.011 16.5 0.0 0.028 15.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|282165414|ref|YP_003357799.1| - 0.011 15.3 0.0 0.026 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|282165414|ref|YP_003357799.1| - 0.013 14.4 0.1 0.1 11.4 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|282165414|ref|YP_003357799.1| - 0.014 15.2 0.5 0.13 12.1 0.4 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|282165414|ref|YP_003357799.1| - 0.016 15.1 0.0 0.032 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|282165414|ref|YP_003357799.1| - 0.02 14.0 0.1 0.097 11.8 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.10 gi|282165414|ref|YP_003357799.1| - 0.024 13.3 0.0 0.029 13.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Adeno_IVa2 PF02456.10 gi|282165414|ref|YP_003357799.1| - 0.03 12.9 0.4 0.46 9.0 0.0 2.3 2 1 0 2 2 2 0 Adenovirus IVa2 protein MMR_HSR1 PF01926.18 gi|282165414|ref|YP_003357799.1| - 0.068 13.1 0.4 0.15 11.9 0.3 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Miro PF08477.8 gi|282165414|ref|YP_003357799.1| - 0.091 13.2 0.1 0.15 12.5 0.0 1.8 1 1 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|282165414|ref|YP_003357799.1| - 0.098 12.3 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.12 gi|282165414|ref|YP_003357799.1| - 0.099 12.0 0.2 0.71 9.2 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein TK PF00265.13 gi|282165414|ref|YP_003357799.1| - 0.1 12.1 0.0 3.4 7.1 0.0 2.2 2 0 0 2 2 2 0 Thymidine kinase AAA_28 PF13521.1 gi|282165414|ref|YP_003357799.1| - 0.11 12.4 0.0 0.33 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|282165414|ref|YP_003357799.1| - 0.11 11.9 0.3 0.18 11.2 0.2 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|282165414|ref|YP_003357799.1| - 0.13 11.9 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF485 PF04341.7 gi|282165415|ref|YP_003357800.1| - 1.1 9.0 4.3 1.9 8.2 3.0 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF485 HTH_3 PF01381.17 gi|282165416|ref|YP_003357801.1| - 3.2e-09 36.4 0.0 1.1e-08 34.7 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|282165416|ref|YP_003357801.1| - 9.3e-08 32.0 0.0 4.7e-07 29.7 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|282165416|ref|YP_003357801.1| - 9e-05 22.5 0.0 0.00025 21.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain ACP_syn_III_C PF08541.5 gi|282165417|ref|YP_003357802.1| - 9.5e-12 44.7 0.0 2.8e-10 40.0 0.0 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.12 gi|282165417|ref|YP_003357802.1| - 0.0018 17.8 0.4 0.0033 16.9 0.3 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|282165417|ref|YP_003357802.1| - 0.0041 16.6 0.1 0.022 14.2 0.0 1.8 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|282165417|ref|YP_003357802.1| - 0.011 15.3 4.8 0.011 15.3 3.4 2.8 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|282165418|ref|YP_003357803.1| - 6.9e-11 41.6 5.8 5.4e-10 38.6 1.5 2.2 1 1 1 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|282165418|ref|YP_003357803.1| - 1.7e-10 40.3 1.9 3.3e-09 36.2 1.3 2.5 1 1 1 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|282165418|ref|YP_003357803.1| - 2e-05 24.1 4.1 2e-05 24.1 2.8 2.4 1 1 1 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|282165418|ref|YP_003357803.1| - 0.3 10.7 4.7 3.5 7.3 0.3 2.7 2 1 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RbcS PF12338.3 gi|282165418|ref|YP_003357803.1| - 0.58 9.9 0.0 0.58 9.9 0.0 2.3 3 0 0 3 3 3 0 Ribulose-1,5-bisphosphate carboxylase small subunit DUF35 PF01796.12 gi|282165419|ref|YP_003357804.1| - 6.6e-17 61.5 0.2 8.5e-17 61.1 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|282165419|ref|YP_003357804.1| - 4.1e-11 42.4 3.3 6.7e-11 41.7 2.3 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|282165419|ref|YP_003357804.1| - 0.013 15.2 1.3 0.022 14.5 0.9 1.3 1 0 0 1 1 1 0 Double zinc ribbon tRNA_anti-codon PF01336.20 gi|282165420|ref|YP_003357805.1| - 7.2e-05 22.5 0.0 9.6e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain CorA PF01544.13 gi|282165421|ref|YP_003357806.1| - 6.7e-73 245.2 0.5 8e-73 245.0 0.4 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Flavodoxin_5 PF12724.2 gi|282165422|ref|YP_003357807.1| - 7e-11 42.3 0.0 8.5e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|282165422|ref|YP_003357807.1| - 1.5e-08 34.7 0.1 2.5e-08 34.0 0.1 1.5 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|282165422|ref|YP_003357807.1| - 0.00014 21.3 0.1 0.00019 20.9 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|282165422|ref|YP_003357807.1| - 0.00015 21.2 0.0 0.013 14.9 0.0 2.2 1 1 0 1 1 1 1 NADPH-dependent FMN reductase V4R PF02830.13 gi|282165423|ref|YP_003357808.1| - 6.6e-16 57.9 1.8 1.1e-15 57.1 1.3 1.4 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.15 gi|282165423|ref|YP_003357808.1| - 6.2e-10 38.5 0.1 1.2e-09 37.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|282165423|ref|YP_003357808.1| - 3.3e-07 29.8 0.1 5.5e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|282165423|ref|YP_003357808.1| - 7.5e-07 28.8 0.0 1.4e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|282165423|ref|YP_003357808.1| - 0.00052 19.3 0.3 0.0012 18.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sulfolobus_pRN PF05584.6 gi|282165423|ref|YP_003357808.1| - 0.0011 18.8 0.1 0.0022 17.9 0.1 1.4 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_IclR PF09339.5 gi|282165423|ref|YP_003357808.1| - 0.0038 16.7 0.1 0.0073 15.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|282165423|ref|YP_003357808.1| - 0.0042 16.7 0.3 0.0093 15.6 0.2 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|282165423|ref|YP_003357808.1| - 0.012 15.3 0.0 0.027 14.1 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Prismane PF03063.15 gi|282165424|ref|YP_003357809.1| - 4.8e-174 579.5 0.0 5.3e-174 579.3 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family HEAT_2 PF13646.1 gi|282165425|ref|YP_003357810.1| - 4.2e-19 68.6 0.0 5.5e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 HEAT repeats HEAT PF02985.17 gi|282165425|ref|YP_003357810.1| - 1.2e-10 40.5 0.0 0.0014 18.5 0.0 3.1 3 0 0 3 3 3 3 HEAT repeat HEAT_PBS PF03130.11 gi|282165425|ref|YP_003357810.1| - 1.3e-09 37.5 0.2 5.2e-06 26.4 0.0 2.5 2 0 0 2 2 2 2 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|282165425|ref|YP_003357810.1| - 8.5e-09 35.6 0.1 4.4e-06 27.0 0.2 3.0 2 1 1 3 3 3 2 HEAT-like repeat Arm PF00514.18 gi|282165425|ref|YP_003357810.1| - 9.1e-06 25.3 0.1 5.3e-05 22.8 0.0 2.3 1 1 2 3 3 3 1 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|282165425|ref|YP_003357810.1| - 0.00096 17.5 0.0 0.054 11.8 0.0 2.1 1 1 1 2 2 2 2 Adaptin N terminal region Cnd1 PF12717.2 gi|282165425|ref|YP_003357810.1| - 0.021 14.6 0.0 12 5.6 0.0 2.8 2 1 0 2 2 2 0 non-SMC mitotic condensation complex subunit 1 HMA PF00403.21 gi|282165426|ref|YP_003357811.1| - 4e-15 55.6 1.3 4.9e-15 55.4 0.9 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain Spore_YhcN_YlaJ PF09580.5 gi|282165426|ref|YP_003357811.1| - 0.0054 16.8 0.3 0.0059 16.7 0.2 1.1 1 0 0 1 1 1 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Rubredoxin PF00301.15 gi|282165427|ref|YP_003357812.1| - 1.9e-24 85.2 5.4 2.1e-24 85.0 3.8 1.0 1 0 0 1 1 1 1 Rubredoxin zf-RanBP PF00641.13 gi|282165427|ref|YP_003357812.1| - 0.0026 16.8 3.4 0.17 10.9 0.1 2.1 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others zf-Sec23_Sec24 PF04810.10 gi|282165427|ref|YP_003357812.1| - 0.041 13.4 0.6 2.1 8.0 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Prim_Zn_Ribbon PF08273.7 gi|282165427|ref|YP_003357812.1| - 0.085 12.9 0.7 0.41 10.7 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-MIZ PF02891.15 gi|282165427|ref|YP_003357812.1| - 0.31 10.6 0.3 0.31 10.6 0.2 2.0 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger DUF2148 PF09918.4 gi|282165428|ref|YP_003357813.1| - 2.9e-21 74.9 1.3 5e-21 74.1 0.3 1.8 2 0 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) Nitroreductase PF00881.19 gi|282165428|ref|YP_003357813.1| - 0.035 13.9 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Nitroreductase family XPG_I PF00867.13 gi|282165429|ref|YP_003357814.1| - 8.9e-27 92.9 0.0 1.8e-26 92.0 0.0 1.6 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|282165429|ref|YP_003357814.1| - 6.5e-18 64.8 0.0 1.1e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|282165429|ref|YP_003357814.1| - 1.4e-05 25.2 0.0 3.4e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|282165429|ref|YP_003357814.1| - 0.061 13.2 0.0 0.17 11.7 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF169 PF02596.10 gi|282165430|ref|YP_003357815.1| - 3.3e-73 245.6 0.1 3.6e-73 245.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 AP_endonuc_2 PF01261.19 gi|282165431|ref|YP_003357816.1| - 2.7e-09 36.6 0.0 1.2e-06 28.0 0.0 2.1 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel GXGXG PF01493.14 gi|282165433|ref|YP_003357818.1| - 2.1e-31 108.5 21.6 3.7e-31 107.7 15.0 1.4 1 1 0 1 1 1 1 GXGXG motif Amidohydro_3 PF07969.6 gi|282165434|ref|YP_003357819.1| - 1.8e-61 208.6 0.3 2.2e-61 208.3 0.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.15 gi|282165434|ref|YP_003357819.1| - 7.6e-10 38.9 0.3 0.00032 20.4 0.0 2.6 2 1 0 3 3 3 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|282165434|ref|YP_003357819.1| - 1.1e-09 37.9 0.1 1.1e-09 37.9 0.1 2.5 4 0 0 4 4 4 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|282165434|ref|YP_003357819.1| - 3.5e-06 27.2 0.2 0.0089 16.0 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase Phage_RpbA PF10789.4 gi|282165434|ref|YP_003357819.1| - 0.12 12.2 0.0 0.32 10.8 0.0 1.7 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA Molybdopterin PF00384.17 gi|282165435|ref|YP_003357820.1| - 2.5e-10 39.6 0.0 5.7e-07 28.6 0.0 2.7 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|282165436|ref|YP_003357821.1| - 2.3e-15 56.3 0.0 2.8e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FlpD PF02662.11 gi|282165437|ref|YP_003357822.1| - 4.9e-51 171.6 0.1 6.1e-51 171.3 0.0 1.1 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|282165438|ref|YP_003357823.1| - 7e-16 57.0 40.1 5.5e-06 25.7 1.6 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282165438|ref|YP_003357823.1| - 2.9e-14 52.6 30.3 2.9e-08 33.4 5.8 4.1 4 0 0 4 4 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282165438|ref|YP_003357823.1| - 3.7e-13 49.6 37.5 1.2e-09 38.3 7.1 4.2 2 1 3 5 5 4 3 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|282165438|ref|YP_003357823.1| - 1.6e-12 47.7 0.0 1e-10 41.8 0.0 3.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_10 PF13237.1 gi|282165438|ref|YP_003357823.1| - 8.7e-11 41.4 30.5 1.8e-05 24.4 6.8 4.2 4 1 0 4 4 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282165438|ref|YP_003357823.1| - 2.5e-10 40.4 34.1 3.6e-07 30.3 5.8 4.3 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282165438|ref|YP_003357823.1| - 3.6e-10 40.4 22.3 0.004 17.8 0.8 4.9 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|282165438|ref|YP_003357823.1| - 8.7e-09 35.2 25.2 2.5e-05 24.2 3.8 3.7 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282165438|ref|YP_003357823.1| - 7e-08 32.0 43.8 0.0017 18.1 2.8 5.2 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|282165438|ref|YP_003357823.1| - 8.7e-08 32.3 25.2 1.5e-05 25.2 2.2 4.5 3 1 2 5 5 5 4 4Fe-4S dicluster domain FAD_oxidored PF12831.2 gi|282165438|ref|YP_003357823.1| - 7.6e-06 25.2 0.0 7.6e-06 25.2 0.0 1.9 2 0 0 2 2 1 1 FAD dependent oxidoreductase Fer4_2 PF12797.2 gi|282165438|ref|YP_003357823.1| - 1.1e-05 25.0 42.3 0.05 13.5 2.7 5.1 5 0 0 5 5 4 4 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|282165438|ref|YP_003357823.1| - 1.5e-05 24.0 0.2 3.3e-05 22.9 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_15 PF13459.1 gi|282165438|ref|YP_003357823.1| - 2e-05 25.0 27.8 0.033 14.7 1.2 5.0 3 1 1 4 4 4 3 4Fe-4S single cluster domain DAO PF01266.19 gi|282165438|ref|YP_003357823.1| - 2e-05 23.6 0.1 0.0051 15.7 0.1 2.8 2 1 1 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|282165438|ref|YP_003357823.1| - 7.3e-05 21.7 0.0 0.00014 20.8 0.0 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|282165438|ref|YP_003357823.1| - 0.00027 20.9 0.0 0.00064 19.6 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_18 PF13746.1 gi|282165438|ref|YP_003357823.1| - 0.00051 20.4 35.8 0.15 12.5 3.2 5.5 4 1 1 5 5 5 3 4Fe-4S dicluster domain Pyr_redox_3 PF13738.1 gi|282165438|ref|YP_003357823.1| - 0.00061 19.9 0.1 0.0028 17.7 0.0 2.0 2 1 1 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|282165438|ref|YP_003357823.1| - 0.00077 18.6 0.0 0.002 17.2 0.0 1.6 1 0 0 1 1 1 1 Thi4 family Fer4_13 PF13370.1 gi|282165438|ref|YP_003357823.1| - 0.0098 16.2 34.1 0.17 12.3 1.1 6.0 6 0 0 6 6 6 2 4Fe-4S single cluster domain HI0933_like PF03486.9 gi|282165438|ref|YP_003357823.1| - 0.012 14.1 0.3 0.021 13.3 0.2 1.4 1 0 0 1 1 1 0 HI0933-like protein Fer4_4 PF12800.2 gi|282165438|ref|YP_003357823.1| - 0.02 15.2 2.1 0.02 15.2 1.5 6.0 6 0 0 6 6 5 0 4Fe-4S binding domain FAD_binding_3 PF01494.14 gi|282165438|ref|YP_003357823.1| - 0.042 12.8 0.3 0.069 12.1 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.7 gi|282165438|ref|YP_003357823.1| - 0.12 11.2 0.0 1.9 7.3 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein CCG PF02754.11 gi|282165439|ref|YP_003357824.1| - 3.1e-33 113.6 4.1 3.7e-19 68.4 0.1 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|282165440|ref|YP_003357825.1| - 2.2e-11 43.6 8.9 3.2e-11 43.0 6.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282165440|ref|YP_003357825.1| - 1.6e-10 41.1 9.3 2.6e-10 40.4 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282165440|ref|YP_003357825.1| - 6.5e-07 29.5 7.9 1.2e-06 28.6 5.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|282165440|ref|YP_003357825.1| - 0.00011 22.8 2.6 0.31 11.8 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|282165440|ref|YP_003357825.1| - 0.00029 20.5 10.6 0.00079 19.1 7.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282165440|ref|YP_003357825.1| - 0.00058 20.1 9.7 0.0014 18.9 6.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|282165440|ref|YP_003357825.1| - 0.0024 18.2 12.3 0.23 11.9 2.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282165440|ref|YP_003357825.1| - 0.0065 16.2 1.8 0.0065 16.2 1.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282165440|ref|YP_003357825.1| - 0.0067 16.2 5.9 0.014 15.2 4.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282165440|ref|YP_003357825.1| - 0.015 15.1 12.3 0.16 11.9 2.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain ATP-sulfurylase PF01747.12 gi|282165440|ref|YP_003357825.1| - 0.016 14.5 0.0 0.025 13.8 0.0 1.3 1 0 0 1 1 1 0 ATP-sulfurylase Fer4_4 PF12800.2 gi|282165440|ref|YP_003357825.1| - 0.022 15.0 11.3 0.33 11.4 2.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain TGT PF01702.13 gi|282165440|ref|YP_003357825.1| - 0.074 12.3 0.3 0.11 11.7 0.2 1.2 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase Fer4_20 PF14691.1 gi|282165440|ref|YP_003357825.1| - 0.13 11.8 6.3 0.33 10.5 0.1 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.22 gi|282165440|ref|YP_003357825.1| - 0.65 9.6 13.8 2.9 7.6 1.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|282165440|ref|YP_003357825.1| - 4.3 8.1 16.1 3.7 8.3 3.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|282165441|ref|YP_003357826.1| - 2e-46 153.8 77.6 5.5e-09 35.2 2.5 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|282165441|ref|YP_003357826.1| - 5.1e-37 126.0 60.5 9.6e-11 41.9 6.6 5.2 2 1 4 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282165441|ref|YP_003357826.1| - 1.1e-31 108.3 65.5 8.1e-08 31.9 7.2 6.5 3 2 5 8 8 8 8 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282165441|ref|YP_003357826.1| - 2.4e-28 96.3 73.4 7.3e-06 25.6 2.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282165441|ref|YP_003357826.1| - 3.3e-28 98.2 61.0 3.1e-08 34.2 6.2 6.1 4 1 2 6 6 6 6 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|282165441|ref|YP_003357826.1| - 1.1e-27 95.6 58.9 3.2e-07 30.1 5.7 6.6 5 2 2 7 7 7 7 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282165441|ref|YP_003357826.1| - 2.5e-27 94.8 66.0 1.9e-08 34.4 7.2 6.5 4 3 4 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282165441|ref|YP_003357826.1| - 8.8e-25 85.4 78.9 1.7e-06 27.6 2.0 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_8 PF13183.1 gi|282165441|ref|YP_003357826.1| - 7.7e-19 67.4 60.8 6e-05 22.9 6.9 5.8 1 1 7 8 8 8 8 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282165441|ref|YP_003357826.1| - 1.3e-14 54.2 58.4 0.00015 22.0 6.1 6.5 3 2 6 9 9 9 7 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282165441|ref|YP_003357826.1| - 3.9e-12 46.5 58.8 0.008 16.7 1.9 8.3 6 1 1 7 7 6 6 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|282165441|ref|YP_003357826.1| - 1.5e-09 37.3 77.2 0.00022 21.2 2.0 8.2 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_3 PF12798.2 gi|282165441|ref|YP_003357826.1| - 1.3e-08 34.7 93.9 0.15 12.7 4.6 8.4 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_18 PF13746.1 gi|282165441|ref|YP_003357826.1| - 3.3e-08 33.8 63.7 0.0059 16.9 0.1 8.2 4 1 4 8 8 8 4 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282165441|ref|YP_003357826.1| - 0.00013 22.2 79.4 0.073 13.4 2.9 7.8 7 1 0 7 7 7 5 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|282165441|ref|YP_003357826.1| - 0.00031 20.5 46.4 0.0078 16.0 7.8 5.4 2 2 3 5 5 5 3 4Fe-4S dicluster domain zf-ribbon_3 PF13248.1 gi|282165441|ref|YP_003357826.1| - 0.073 12.3 0.1 0.073 12.3 0.0 6.1 6 0 0 6 6 6 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|282165441|ref|YP_003357826.1| - 0.12 11.8 0.1 0.12 11.8 0.0 5.3 6 0 0 6 6 6 0 zinc-ribbon domain Fer4 PF00037.22 gi|282165442|ref|YP_003357827.1| - 8.1e-15 53.7 18.2 1e-08 34.3 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282165442|ref|YP_003357827.1| - 1.2e-12 48.3 15.8 6.9e-10 39.5 4.8 1.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|282165442|ref|YP_003357827.1| - 2.2e-12 47.1 8.7 3.2e-12 46.6 6.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|282165442|ref|YP_003357827.1| - 6.7e-12 44.7 15.8 8.4e-07 28.6 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|282165442|ref|YP_003357827.1| - 8.1e-12 44.3 14.8 1.9e-06 27.4 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|282165442|ref|YP_003357827.1| - 7.2e-11 41.7 6.6 2.5e-05 24.0 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|282165442|ref|YP_003357827.1| - 9.8e-10 38.1 12.0 3.3e-09 36.4 8.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282165442|ref|YP_003357827.1| - 3.2e-09 36.9 9.4 5.1e-09 36.2 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282165442|ref|YP_003357827.1| - 2.4e-07 30.5 11.6 0.0018 18.4 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|282165442|ref|YP_003357827.1| - 2.8e-06 27.6 9.7 0.0061 16.9 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|282165442|ref|YP_003357827.1| - 1.1e-05 25.8 10.0 0.0014 19.1 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|282165442|ref|YP_003357827.1| - 1.4e-05 24.9 24.2 0.00016 21.6 8.8 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282165442|ref|YP_003357827.1| - 2.6e-05 24.5 9.2 0.00012 22.3 6.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|282165442|ref|YP_003357827.1| - 3.7e-05 23.9 21.4 0.0081 16.6 5.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|282165442|ref|YP_003357827.1| - 0.0032 17.3 3.9 0.047 13.5 2.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|282165442|ref|YP_003357827.1| - 0.039 14.3 12.7 0.13 12.6 1.9 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Me-amine-dh_L PF02975.9 gi|282165442|ref|YP_003357827.1| - 1.9 8.4 6.7 8.2 6.4 4.6 1.8 1 1 0 1 1 1 0 Methylamine dehydrogenase, L chain DUF164 PF02591.10 gi|282165442|ref|YP_003357827.1| - 3.2 7.6 9.4 5.9 6.8 0.3 2.3 2 1 0 2 2 2 0 Putative zinc ribbon domain Fer4_20 PF14691.1 gi|282165442|ref|YP_003357827.1| - 5.5 6.6 9.1 13 5.4 6.3 1.6 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Oxidored_q6 PF01058.17 gi|282165443|ref|YP_003357828.1| - 3.3e-28 97.8 0.1 6.1e-28 97.0 0.1 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.14 gi|282165444|ref|YP_003357829.1| - 8.6e-38 130.3 0.1 3.9e-21 75.3 0.0 2.7 2 1 1 3 3 3 2 Nickel-dependent hydrogenase Myco_19_kDa PF05481.7 gi|282165445|ref|YP_003357830.1| - 0.22 11.3 10.9 0.064 13.0 4.7 2.1 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen DUF3332 PF11810.3 gi|282165445|ref|YP_003357830.1| - 0.71 9.5 2.8 0.44 10.1 0.4 1.8 3 0 0 3 3 3 0 Domain of unknown function (DUF3332) DUF1628 PF07790.6 gi|282165445|ref|YP_003357830.1| - 1.3 9.7 4.4 0.83 10.4 0.8 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1628) DUF4165 PF13752.1 gi|282165446|ref|YP_003357831.1| - 0.0026 17.4 0.9 0.004 16.9 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4165) FMN_red PF03358.10 gi|282165447|ref|YP_003357832.1| - 1.6e-25 89.3 0.0 2.1e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|282165447|ref|YP_003357832.1| - 1.4e-13 50.8 0.0 2.3e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold TctA PF01970.11 gi|282165448|ref|YP_003357833.1| - 4.4e-67 226.3 51.7 5.3e-67 226.0 35.8 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family HisG PF01634.13 gi|282165449|ref|YP_003357834.1| - 2.4e-52 176.7 0.3 4.2e-52 176.0 0.2 1.4 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|282165449|ref|YP_003357834.1| - 4.6e-27 93.7 0.3 9.4e-27 92.7 0.2 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|282165449|ref|YP_003357834.1| - 0.00014 21.5 0.1 0.0058 16.2 0.1 2.9 1 1 0 1 1 1 1 NMT1/THI5 like DUF881 PF05949.7 gi|282165449|ref|YP_003357834.1| - 0.025 14.0 0.0 0.056 12.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) PcrB PF01884.12 gi|282165450|ref|YP_003357835.1| - 2e-64 217.0 0.0 2.3e-64 216.8 0.0 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.15 gi|282165450|ref|YP_003357835.1| - 0.0011 17.5 0.2 0.0054 15.2 0.0 2.0 2 1 1 3 3 3 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|282165450|ref|YP_003357835.1| - 0.0061 15.8 0.0 0.017 14.3 0.0 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein B12-binding PF02310.14 gi|282165450|ref|YP_003357835.1| - 0.021 14.6 0.1 5 7.0 0.0 2.3 2 0 0 2 2 2 0 B12 binding domain Ribul_P_3_epim PF00834.14 gi|282165450|ref|YP_003357835.1| - 0.041 12.9 0.0 0.27 10.3 0.0 2.1 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|282165450|ref|YP_003357835.1| - 0.059 12.8 0.3 12 5.3 0.1 2.5 2 1 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Methyltransf_11 PF08241.7 gi|282165451|ref|YP_003357836.1| - 7.6e-23 80.8 0.0 1.1e-22 80.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282165451|ref|YP_003357836.1| - 2.1e-20 72.8 0.0 2.7e-20 72.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282165451|ref|YP_003357836.1| - 5.7e-16 59.0 0.0 7.9e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282165451|ref|YP_003357836.1| - 1.7e-15 57.0 0.0 2.2e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282165451|ref|YP_003357836.1| - 7.6e-15 55.2 0.0 1.2e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282165451|ref|YP_003357836.1| - 8.1e-15 54.5 0.0 9.8e-15 54.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|282165451|ref|YP_003357836.1| - 4.6e-14 52.6 0.0 8.3e-14 51.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|282165451|ref|YP_003357836.1| - 1.9e-08 34.3 0.0 3e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|282165451|ref|YP_003357836.1| - 2.8e-08 33.3 0.0 4e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|282165451|ref|YP_003357836.1| - 2.6e-07 30.2 0.0 3.7e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|282165451|ref|YP_003357836.1| - 0.00052 19.7 0.0 0.0015 18.2 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_4 PF02390.12 gi|282165451|ref|YP_003357836.1| - 0.00068 18.7 0.0 0.0012 17.8 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_32 PF13679.1 gi|282165451|ref|YP_003357836.1| - 0.0024 17.5 0.0 0.0033 17.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|282165451|ref|YP_003357836.1| - 0.0059 15.7 0.0 0.0075 15.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_29 PF03141.11 gi|282165451|ref|YP_003357836.1| - 0.0082 14.5 0.0 0.0098 14.2 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.8 gi|282165451|ref|YP_003357836.1| - 0.016 14.3 0.0 0.019 14.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.6 gi|282165451|ref|YP_003357836.1| - 0.022 13.7 0.0 0.028 13.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) UPF0020 PF01170.13 gi|282165451|ref|YP_003357836.1| - 0.034 13.7 0.0 0.044 13.3 0.0 1.1 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_2 PF00891.13 gi|282165451|ref|YP_003357836.1| - 0.082 12.0 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase PCMT PF01135.14 gi|282165451|ref|YP_003357836.1| - 0.16 11.4 0.0 0.22 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UbiA PF01040.13 gi|282165452|ref|YP_003357837.1| - 4.7e-33 114.5 23.2 1.2e-32 113.1 16.1 1.6 1 1 0 1 1 1 1 UbiA prenyltransferase family YtpI PF14007.1 gi|282165452|ref|YP_003357837.1| - 0.0004 20.2 9.9 0.091 12.6 0.2 3.2 2 1 1 3 3 3 2 YtpI-like protein DUF367 PF04034.8 gi|282165453|ref|YP_003357838.1| - 5.6e-44 148.8 0.0 6.8e-44 148.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|282165453|ref|YP_003357838.1| - 1.3e-09 37.4 0.1 2.1e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI PAS_9 PF13426.1 gi|282165454|ref|YP_003357839.1| - 2.7e-38 130.5 0.0 1.2e-13 51.2 0.0 3.8 3 1 0 3 3 3 3 PAS domain PAS PF00989.19 gi|282165454|ref|YP_003357839.1| - 2.8e-33 114.0 0.0 2.4e-10 40.1 0.0 4.9 5 0 0 5 5 5 3 PAS fold PAS_4 PF08448.5 gi|282165454|ref|YP_003357839.1| - 2.6e-28 98.2 0.0 1.1e-08 35.0 0.0 3.9 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|282165454|ref|YP_003357839.1| - 2.9e-23 80.8 0.0 1.9e-07 30.6 0.0 4.1 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.21 gi|282165454|ref|YP_003357839.1| - 6.2e-19 67.7 0.0 1.5e-18 66.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|282165454|ref|YP_003357839.1| - 7.2e-14 51.6 0.0 5.7e-09 35.9 0.0 4.2 4 0 0 4 4 4 2 PAS fold PAS_7 PF12860.2 gi|282165454|ref|YP_003357839.1| - 1.2e-05 25.2 0.6 0.012 15.6 0.0 4.1 4 1 0 4 4 4 1 PAS fold HATPase_c_2 PF13581.1 gi|282165454|ref|YP_003357839.1| - 0.00092 18.9 0.0 0.003 17.3 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Helicase_C_4 PF13871.1 gi|282165454|ref|YP_003357839.1| - 0.062 12.7 0.0 0.098 12.0 0.0 1.3 1 0 0 1 1 1 0 Helicase_C-like DEAD PF00270.24 gi|282165455|ref|YP_003357840.1| - 4.3e-29 101.1 0.0 7.6e-28 97.1 0.0 2.8 4 0 0 4 4 4 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|282165455|ref|YP_003357840.1| - 1.7e-09 37.4 0.1 5.5e-09 35.7 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|282165455|ref|YP_003357840.1| - 4.2e-09 36.4 1.4 1.1e-07 31.8 0.2 3.4 3 1 0 3 3 3 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|282165455|ref|YP_003357840.1| - 3e-05 23.9 0.1 0.00011 22.0 0.0 2.0 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit HemN_C PF06969.11 gi|282165455|ref|YP_003357840.1| - 0.0084 16.1 0.2 0.14 12.1 0.0 2.6 2 0 0 2 2 2 1 HemN C-terminal domain HHH PF00633.18 gi|282165455|ref|YP_003357840.1| - 0.017 14.8 0.1 1.6 8.5 0.0 3.3 3 0 0 3 3 3 0 Helix-hairpin-helix motif CGI-121 PF08617.5 gi|282165456|ref|YP_003357841.1| - 1.5e-20 73.5 0.0 1.7e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 RC-P840_PscD PF10657.4 gi|282165456|ref|YP_003357841.1| - 0.054 13.3 0.0 0.078 12.8 0.0 1.3 1 0 0 1 1 1 0 Photosystem P840 reaction centre protein PscD FdhD-NarQ PF02634.10 gi|282165457|ref|YP_003357842.1| - 1.2e-52 178.6 0.0 1.5e-52 178.4 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family TFX_C PF14601.1 gi|282165458|ref|YP_003357843.1| - 2.7e-30 103.9 0.8 4.6e-30 103.2 0.5 1.4 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|282165458|ref|YP_003357843.1| - 1.7e-06 27.2 2.1 3e-06 26.4 1.4 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.2 gi|282165458|ref|YP_003357843.1| - 0.0013 18.7 0.6 0.0059 16.6 0.1 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|282165458|ref|YP_003357843.1| - 0.0018 18.4 0.7 0.0029 17.7 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|282165458|ref|YP_003357843.1| - 0.0024 17.6 0.4 0.0044 16.7 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.14 gi|282165458|ref|YP_003357843.1| - 0.0025 17.0 0.2 0.0039 16.4 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|282165458|ref|YP_003357843.1| - 0.0026 17.3 1.1 0.0046 16.5 0.8 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|282165458|ref|YP_003357843.1| - 0.0043 16.4 0.1 0.0068 15.8 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|282165458|ref|YP_003357843.1| - 0.0055 16.5 0.8 0.011 15.5 0.3 1.8 1 1 1 2 2 2 1 Helix-turn-helix RepB PF07506.6 gi|282165458|ref|YP_003357843.1| - 0.015 15.1 0.1 0.02 14.7 0.1 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein Cation_ATPase_N PF00690.21 gi|282165458|ref|YP_003357843.1| - 0.016 14.6 0.0 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 Cation transporter/ATPase, N-terminus HTH_38 PF13936.1 gi|282165458|ref|YP_003357843.1| - 0.031 13.8 0.1 0.08 12.5 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2481 PF10654.4 gi|282165458|ref|YP_003357843.1| - 0.05 13.2 0.1 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2481) HTH_28 PF13518.1 gi|282165458|ref|YP_003357843.1| - 0.079 12.9 1.0 0.22 11.5 0.4 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|282165458|ref|YP_003357843.1| - 0.084 12.5 0.2 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 MarR family MarR PF01047.17 gi|282165458|ref|YP_003357843.1| - 0.088 12.5 0.1 0.2 11.4 0.1 1.6 1 0 0 1 1 1 0 MarR family DUF1786 PF08735.5 gi|282165459|ref|YP_003357844.1| - 1.5e-82 276.6 0.3 1.8e-82 276.3 0.2 1.0 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) Transglut_core PF01841.14 gi|282165460|ref|YP_003357845.1| - 0.011 15.9 0.1 0.019 15.1 0.1 1.4 1 0 0 1 1 1 0 Transglutaminase-like superfamily MFS_1 PF07690.11 gi|282165461|ref|YP_003357846.1| - 7.4e-46 156.4 50.1 4.6e-29 101.2 15.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|282165461|ref|YP_003357846.1| - 8.5e-10 37.3 24.2 2.3e-09 35.9 16.7 1.6 1 1 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|282165461|ref|YP_003357846.1| - 2.4e-09 36.3 39.8 6.9e-06 24.8 8.0 3.2 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_1_like PF12832.2 gi|282165461|ref|YP_003357846.1| - 0.014 15.1 6.8 0.53 10.1 0.2 3.6 4 0 0 4 4 4 0 MFS_1 like family PDR_assoc PF08370.6 gi|282165461|ref|YP_003357846.1| - 0.055 12.9 0.2 1.9 8.0 0.1 2.7 2 0 0 2 2 2 0 Plant PDR ABC transporter associated DUF1517 PF07466.6 gi|282165461|ref|YP_003357846.1| - 6 5.7 7.9 4.3 6.2 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1517) CarboxypepD_reg PF13620.1 gi|282165462|ref|YP_003357847.1| - 1.1e-08 34.9 0.7 5.4e-08 32.7 0.5 2.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|282165462|ref|YP_003357847.1| - 0.0059 16.3 0.3 0.02 14.6 0.2 2.0 1 1 0 1 1 1 1 Cna protein B-type domain DUF605 PF04652.11 gi|282165462|ref|YP_003357847.1| - 6.8 5.9 27.0 10 5.4 18.7 1.3 1 0 0 1 1 1 0 Vta1 like PT PF04886.7 gi|282165462|ref|YP_003357847.1| - 9.4 5.6 140.7 1.5e+04 -89.1 97.6 4.7 1 1 0 1 1 1 0 PT repeat CxxCxxCC PF03692.10 gi|282165463|ref|YP_003357848.1| - 2.4e-06 27.8 2.2 3.4e-06 27.4 1.5 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain ODV-E18 PF10717.4 gi|282165464|ref|YP_003357849.1| - 0.018 14.4 4.1 0.039 13.4 2.8 1.5 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 SLAC1 PF03595.12 gi|282165464|ref|YP_003357849.1| - 0.025 13.2 0.2 0.034 12.7 0.1 1.1 1 0 0 1 1 1 0 Voltage-dependent anion channel Herpes_gE PF02480.11 gi|282165465|ref|YP_003357850.1| - 0.77 7.9 3.1 0.64 8.2 0.1 1.8 2 0 0 2 2 2 0 Alphaherpesvirus glycoprotein E Calx-beta PF03160.9 gi|282165466|ref|YP_003357851.1| - 6.5e-116 379.0 14.3 5.3e-26 90.4 0.2 5.4 5 0 0 5 5 5 5 Calx-beta domain DUF1735 PF08522.5 gi|282165466|ref|YP_003357851.1| - 0.0049 17.2 1.0 9.3 6.7 0.1 4.2 3 0 0 3 3 3 1 Domain of unknown function (DUF1735) CBM_X2 PF03442.9 gi|282165466|ref|YP_003357851.1| - 0.27 11.1 12.0 0.34 10.7 0.1 4.9 5 0 0 5 5 5 0 Carbohydrate binding domain X2 DUF4480 PF13715.1 gi|282165467|ref|YP_003357852.1| - 0.034 14.2 1.9 0.034 14.2 1.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4480) DUF4366 PF14283.1 gi|282165467|ref|YP_003357852.1| - 0.059 12.7 2.6 0.06 12.7 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4366) DUF2077 PF09850.4 gi|282165467|ref|YP_003357852.1| - 0.18 11.1 0.2 0.29 10.5 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2077) DUF4381 PF14316.1 gi|282165467|ref|YP_003357852.1| - 0.28 11.2 2.5 0.49 10.4 1.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) DUF3753 PF12575.3 gi|282165467|ref|YP_003357852.1| - 0.46 10.3 0.0 0.46 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) DUF4131 PF13567.1 gi|282165467|ref|YP_003357852.1| - 0.89 8.9 6.0 1.5 8.1 0.9 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF454 PF04304.8 gi|282165467|ref|YP_003357852.1| - 6 6.9 10.2 1 9.4 2.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF454) Calx-beta PF03160.9 gi|282165468|ref|YP_003357853.1| - 2.4e-32 110.8 1.4 6.4e-18 64.5 0.5 2.6 2 0 0 2 2 2 2 Calx-beta domain PBP_like PF12727.2 gi|282165469|ref|YP_003357854.1| - 1.4e-58 197.0 0.1 2.8e-58 196.0 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.12 gi|282165469|ref|YP_003357854.1| - 4.8e-50 169.0 2.0 1.1e-49 167.9 1.4 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|282165469|ref|YP_003357854.1| - 1.1e-26 92.9 0.1 2e-26 92.1 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|282165469|ref|YP_003357854.1| - 2.1e-12 46.8 0.1 1e-11 44.6 0.1 2.3 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|282165469|ref|YP_003357854.1| - 4.4e-05 23.2 0.1 0.00022 20.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|282165469|ref|YP_003357854.1| - 0.0052 16.1 0.0 0.01 15.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.15 gi|282165469|ref|YP_003357854.1| - 0.0061 15.6 0.0 0.42 9.6 0.0 3.2 2 1 0 2 2 2 1 LysR substrate binding domain MoeA_N PF03453.12 gi|282165470|ref|YP_003357855.1| - 8.7e-47 158.4 0.1 4.9e-46 156.0 0.0 2.0 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|282165470|ref|YP_003357855.1| - 4.2e-26 91.0 0.1 8e-26 90.1 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|282165470|ref|YP_003357855.1| - 3e-19 68.7 2.1 1.3e-18 66.6 0.0 3.0 4 0 0 4 4 4 1 MoeA C-terminal region (domain IV) DUF4366 PF14283.1 gi|282165471|ref|YP_003357856.1| - 0.092 12.1 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) PLRV_ORF5 PF01690.12 gi|282165471|ref|YP_003357856.1| - 2 7.4 13.5 2.9 6.9 9.3 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Lamp PF01299.12 gi|282165471|ref|YP_003357856.1| - 2.7 7.0 5.7 4.2 6.4 4.0 1.3 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) DUF3246 PF11596.3 gi|282165471|ref|YP_003357856.1| - 6.4 5.9 9.2 0.86 8.8 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3246) Peptidase_S8 PF00082.17 gi|282165472|ref|YP_003357857.1| - 8.3e-64 215.4 11.1 8.3e-64 215.4 7.7 2.8 2 1 0 2 2 2 1 Subtilase family Calx-beta PF03160.9 gi|282165472|ref|YP_003357857.1| - 4.3e-57 190.2 3.9 7.9e-21 73.8 0.0 3.6 3 0 0 3 3 3 3 Calx-beta domain Inhibitor_I9 PF05922.11 gi|282165472|ref|YP_003357857.1| - 1.7e-11 44.5 0.1 3.9e-11 43.3 0.1 1.7 1 0 0 1 1 1 1 Peptidase inhibitor I9 BPD_transp_1 PF00528.17 gi|282165474|ref|YP_003357859.1| - 8e-13 48.3 18.2 1.4e-12 47.5 12.6 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|282165475|ref|YP_003357860.1| - 2e-31 109.1 0.0 2.9e-31 108.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282165475|ref|YP_003357860.1| - 1.7e-10 41.3 0.0 0.00052 20.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|282165475|ref|YP_003357860.1| - 6.8e-08 32.0 0.0 0.00018 20.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|282165475|ref|YP_003357860.1| - 1.4e-05 24.7 0.1 0.11 12.2 0.0 2.3 2 0 0 2 2 2 2 Part of AAA domain AAA_16 PF13191.1 gi|282165475|ref|YP_003357860.1| - 1.5e-05 25.1 0.1 2.5e-05 24.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|282165475|ref|YP_003357860.1| - 0.00014 21.4 0.1 0.11 12.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|282165475|ref|YP_003357860.1| - 0.00024 20.6 0.4 0.031 13.7 0.1 2.1 1 1 0 2 2 2 1 AAA-like domain MobB PF03205.9 gi|282165475|ref|YP_003357860.1| - 0.0005 19.7 0.2 0.0011 18.7 0.0 1.9 2 1 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|282165475|ref|YP_003357860.1| - 0.00088 19.1 0.1 0.0045 16.8 0.1 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|282165475|ref|YP_003357860.1| - 0.00094 19.3 0.1 0.0045 17.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|282165475|ref|YP_003357860.1| - 0.0013 17.2 0.0 0.072 11.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|282165475|ref|YP_003357860.1| - 0.0023 18.7 0.3 0.0069 17.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|282165475|ref|YP_003357860.1| - 0.0029 17.0 0.0 0.78 9.1 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF258 PF03193.11 gi|282165475|ref|YP_003357860.1| - 0.0044 16.2 0.0 0.0064 15.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|282165475|ref|YP_003357860.1| - 0.005 16.2 0.1 0.78 9.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF503 PF04456.7 gi|282165475|ref|YP_003357860.1| - 0.0053 16.3 0.2 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF503) AAA_18 PF13238.1 gi|282165475|ref|YP_003357860.1| - 0.0055 17.0 0.2 0.023 15.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|282165475|ref|YP_003357860.1| - 0.01 15.3 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|282165475|ref|YP_003357860.1| - 0.011 15.5 0.8 0.062 13.1 0.5 2.1 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|282165475|ref|YP_003357860.1| - 0.014 14.9 0.3 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family cobW PF02492.14 gi|282165475|ref|YP_003357860.1| - 0.016 14.7 0.1 0.083 12.3 0.0 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|282165475|ref|YP_003357860.1| - 0.017 14.8 0.3 0.057 13.1 0.2 2.0 1 1 0 1 1 1 0 Archaeal ATPase AAA_28 PF13521.1 gi|282165475|ref|YP_003357860.1| - 0.022 14.7 0.0 0.056 13.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain Phage_HK97_TLTM PF06120.6 gi|282165475|ref|YP_003357860.1| - 0.032 13.5 0.0 0.041 13.2 0.0 1.1 1 0 0 1 1 1 0 Tail length tape measure protein AAA PF00004.24 gi|282165475|ref|YP_003357860.1| - 0.035 14.2 0.3 0.54 10.4 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|282165475|ref|YP_003357860.1| - 0.036 13.7 0.0 0.081 12.5 0.0 1.6 2 0 0 2 2 1 0 NACHT domain Zeta_toxin PF06414.7 gi|282165475|ref|YP_003357860.1| - 0.041 12.9 0.1 0.33 10.0 0.0 2.3 2 1 0 3 3 3 0 Zeta toxin AAA_15 PF13175.1 gi|282165475|ref|YP_003357860.1| - 0.042 12.8 0.0 5.8 5.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Pox_A32 PF04665.7 gi|282165475|ref|YP_003357860.1| - 0.053 12.7 0.0 0.086 12.1 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein DEAD PF00270.24 gi|282165475|ref|YP_003357860.1| - 0.055 12.9 0.0 0.077 12.4 0.0 1.2 1 0 0 1 1 1 0 DEAD/DEAH box helicase PcrB PF01884.12 gi|282165475|ref|YP_003357860.1| - 0.057 12.6 0.1 0.39 9.9 0.0 2.0 2 0 0 2 2 2 0 PcrB family PduV-EutP PF10662.4 gi|282165475|ref|YP_003357860.1| - 0.06 12.8 0.0 0.19 11.2 0.0 1.8 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_14 PF13173.1 gi|282165475|ref|YP_003357860.1| - 0.067 13.0 0.0 2 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|282165475|ref|YP_003357860.1| - 0.071 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|282165475|ref|YP_003357860.1| - 0.091 12.7 0.1 0.48 10.3 0.1 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase UPF0079 PF02367.12 gi|282165475|ref|YP_003357860.1| - 0.11 12.0 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Miro PF08477.8 gi|282165475|ref|YP_003357860.1| - 0.13 12.8 0.0 0.28 11.6 0.0 1.8 1 1 0 1 1 1 0 Miro-like protein Peptidase_M10 PF00413.19 gi|282165476|ref|YP_003357861.1| - 1.8e-06 27.7 0.0 2.3e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Matrixin DUF2268 PF10026.4 gi|282165476|ref|YP_003357861.1| - 8.1e-05 22.0 0.0 0.0001 21.7 0.0 1.2 1 0 0 1 1 1 1 Predicted Zn-dependent protease (DUF2268) Reprolysin_5 PF13688.1 gi|282165476|ref|YP_003357861.1| - 0.0002 21.3 0.0 0.00024 21.1 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_2 PF13574.1 gi|282165476|ref|YP_003357861.1| - 0.0002 21.4 0.0 0.00026 21.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin PF01421.14 gi|282165476|ref|YP_003357861.1| - 0.0022 17.6 0.0 0.003 17.1 0.0 1.1 1 0 0 1 1 1 1 Reprolysin (M12B) family zinc metalloprotease Peptidase_M54 PF07998.6 gi|282165476|ref|YP_003357861.1| - 0.0025 17.5 0.0 0.0041 16.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_3 PF13582.1 gi|282165476|ref|YP_003357861.1| - 0.0051 17.3 0.0 0.0081 16.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|282165476|ref|YP_003357861.1| - 0.01 15.3 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF955 PF06114.8 gi|282165476|ref|YP_003357861.1| - 0.022 14.4 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF955) Peptidase_M43 PF05572.8 gi|282165476|ref|YP_003357861.1| - 0.061 12.9 0.0 0.099 12.2 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A DUF1025 PF06262.6 gi|282165476|ref|YP_003357861.1| - 0.1 12.4 0.7 0.39 10.5 0.1 2.0 2 0 0 2 2 2 0 Possibl zinc metallo-peptidase Astacin PF01400.19 gi|282165476|ref|YP_003357861.1| - 0.16 11.3 0.1 0.26 10.6 0.1 1.2 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) Metallopep PF12044.3 gi|282165476|ref|YP_003357861.1| - 0.2 10.0 0.1 0.28 9.6 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family E1-E2_ATPase PF00122.15 gi|282165477|ref|YP_003357862.1| - 2e-61 206.9 1.1 2e-61 206.9 0.8 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|282165477|ref|YP_003357862.1| - 2.4e-32 113.0 1.0 4.6e-32 112.1 0.7 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|282165477|ref|YP_003357862.1| - 2.3e-28 98.9 6.3 2.3e-28 98.9 4.4 2.0 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus HAD PF12710.2 gi|282165477|ref|YP_003357862.1| - 1.5e-16 61.1 0.0 3.7e-16 59.8 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|282165477|ref|YP_003357862.1| - 4.1e-13 48.5 0.8 2.5e-12 46.0 0.0 2.5 1 1 1 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|282165477|ref|YP_003357862.1| - 0.0002 21.0 0.3 0.014 14.9 0.2 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase FlpD PF02662.11 gi|282165477|ref|YP_003357862.1| - 0.054 13.1 0.0 3.1 7.4 0.0 2.4 1 1 1 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit Hydrolase_like2 PF13246.1 gi|282165477|ref|YP_003357862.1| - 0.1 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative hydrolase of sodium-potassium ATPase alpha subunit HMGL-like PF00682.14 gi|282165478|ref|YP_003357863.1| - 2.4e-51 174.7 6.7 6.2e-51 173.3 4.6 1.7 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|282165478|ref|YP_003357863.1| - 7.9e-32 109.8 1.6 1.9e-31 108.6 1.1 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Bac_luciferase PF00296.15 gi|282165478|ref|YP_003357863.1| - 0.0019 17.4 0.0 0.0049 16.0 0.0 1.7 1 0 0 1 1 1 1 Luciferase-like monooxygenase NYN PF01936.13 gi|282165479|ref|YP_003357864.1| - 6.7e-23 81.5 0.1 9e-23 81.1 0.1 1.1 1 0 0 1 1 1 1 NYN domain DHH PF01368.15 gi|282165480|ref|YP_003357865.1| - 1.5e-14 53.8 0.0 2.7e-14 53.0 0.0 1.4 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|282165480|ref|YP_003357865.1| - 9.7e-11 41.2 4.9 2.1e-10 40.1 3.4 1.6 1 0 0 1 1 1 1 DHHA1 domain His_biosynth PF00977.16 gi|282165481|ref|YP_003357866.1| - 1.6e-25 89.7 0.3 1.8e-25 89.5 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DsbD PF02683.10 gi|282165482|ref|YP_003357867.1| - 1.4e-16 60.7 13.9 2e-16 60.2 9.6 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF2910 PF11139.3 gi|282165482|ref|YP_003357867.1| - 3.5e-07 29.5 13.5 4e-06 26.1 9.0 2.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2910) Thioredoxin_3 PF13192.1 gi|282165482|ref|YP_003357867.1| - 0.0023 17.7 0.0 0.0081 15.9 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin domain ETRAMP PF09716.5 gi|282165482|ref|YP_003357867.1| - 1.6 8.7 3.9 2 8.4 0.1 3.0 3 0 0 3 3 3 0 Malarial early transcribed membrane protein (ETRAMP) HTH_5 PF01022.15 gi|282165484|ref|YP_003357869.1| - 1.1e-18 66.5 0.2 5.6e-13 48.3 0.0 3.1 2 1 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|282165484|ref|YP_003357869.1| - 5.2e-14 51.8 0.2 4e-10 39.3 0.0 2.8 3 0 0 3 3 3 2 Helix-turn-helix domain TrmB PF01978.14 gi|282165484|ref|YP_003357869.1| - 3.3e-11 42.7 0.2 0.00017 21.2 0.0 2.6 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|282165484|ref|YP_003357869.1| - 2.5e-09 36.3 0.4 0.00099 18.4 0.1 3.0 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|282165484|ref|YP_003357869.1| - 3.9e-09 36.0 0.0 0.00027 20.5 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_27 PF13463.1 gi|282165484|ref|YP_003357869.1| - 2.2e-07 31.1 0.1 0.042 14.1 0.0 3.2 3 0 0 3 3 3 2 Winged helix DNA-binding domain MarR PF01047.17 gi|282165484|ref|YP_003357869.1| - 6.6e-07 28.9 0.0 0.00013 21.5 0.0 2.7 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|282165484|ref|YP_003357869.1| - 2.3e-06 27.1 0.0 0.0057 16.2 0.0 2.9 3 0 0 3 3 3 2 HTH domain Rrf2 PF02082.15 gi|282165484|ref|YP_003357869.1| - 2.3e-06 27.6 0.0 0.1 12.7 0.0 2.6 2 0 0 2 2 2 2 Transcriptional regulator Sigma70_r4_2 PF08281.7 gi|282165484|ref|YP_003357869.1| - 2.3e-05 23.7 1.4 0.15 11.5 0.0 4.1 4 0 0 4 4 4 1 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|282165484|ref|YP_003357869.1| - 7.4e-05 22.2 0.0 0.14 11.7 0.0 2.7 2 0 0 2 2 2 2 LexA DNA binding domain Fe_dep_repress PF01325.14 gi|282165484|ref|YP_003357869.1| - 0.00016 21.5 0.0 0.038 13.9 0.0 2.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|282165484|ref|YP_003357869.1| - 0.00017 21.5 0.0 0.26 11.3 0.0 2.4 2 0 0 2 2 2 2 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|282165484|ref|YP_003357869.1| - 0.00028 20.7 0.1 0.063 13.1 0.0 2.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) PadR PF03551.9 gi|282165484|ref|YP_003357869.1| - 0.00093 18.9 0.1 0.02 14.6 0.1 2.8 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family Sigma70_r4 PF04545.11 gi|282165484|ref|YP_003357869.1| - 0.002 17.3 0.1 1 8.6 0.0 2.9 3 0 0 3 3 2 1 Sigma-70, region 4 IF2_N PF04760.10 gi|282165484|ref|YP_003357869.1| - 0.0025 17.4 0.3 0.096 12.3 0.0 2.8 2 1 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region EAP30 PF04157.11 gi|282165484|ref|YP_003357869.1| - 0.003 16.7 0.7 1 8.4 0.0 2.9 2 1 1 3 3 3 1 EAP30/Vps36 family HTH_10 PF04967.7 gi|282165484|ref|YP_003357869.1| - 0.0039 16.7 0.0 0.14 11.8 0.0 2.6 2 0 0 2 2 2 1 HTH DNA binding domain TFIIE_alpha PF02002.12 gi|282165484|ref|YP_003357869.1| - 0.0044 16.5 0.5 0.28 10.6 0.0 2.3 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|282165484|ref|YP_003357869.1| - 0.0073 16.0 0.0 3.7 7.4 0.0 2.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_9 PF08221.6 gi|282165484|ref|YP_003357869.1| - 0.0085 15.9 0.0 0.2 11.5 0.0 2.5 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain FeoC PF09012.5 gi|282165484|ref|YP_003357869.1| - 0.0086 15.7 0.0 0.19 11.4 0.0 2.5 3 0 0 3 3 3 1 FeoC like transcriptional regulator RPA_C PF08784.6 gi|282165484|ref|YP_003357869.1| - 0.024 15.0 0.1 24 5.4 0.0 3.0 3 0 0 3 3 3 0 Replication protein A C terminal HTH_AsnC-type PF13404.1 gi|282165484|ref|YP_003357869.1| - 0.026 14.0 0.0 7.2 6.2 0.0 3.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HxlR PF01638.12 gi|282165484|ref|YP_003357869.1| - 0.042 13.4 0.0 9.5 5.9 0.0 2.4 2 0 0 2 2 2 0 HxlR-like helix-turn-helix TPR_MLP1_2 PF07926.7 gi|282165484|ref|YP_003357869.1| - 0.06 13.0 0.3 0.079 12.7 0.2 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein GntR PF00392.16 gi|282165484|ref|YP_003357869.1| - 0.075 12.4 0.2 6.8 6.2 0.0 3.4 3 1 0 3 3 3 0 Bacterial regulatory proteins, gntR family GerE PF00196.14 gi|282165484|ref|YP_003357869.1| - 0.093 12.0 0.2 13 5.1 0.0 2.7 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family HTH_CodY PF08222.6 gi|282165484|ref|YP_003357869.1| - 0.093 12.0 0.0 0.2 11.0 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|282165484|ref|YP_003357869.1| - 0.094 12.6 0.0 2.1 8.3 0.0 2.2 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein AAA PF00004.24 gi|282165485|ref|YP_003357870.1| - 3e-99 328.3 0.0 3.8e-49 166.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|282165485|ref|YP_003357870.1| - 1.4e-30 105.0 0.1 1.6e-29 101.6 0.2 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|282165485|ref|YP_003357870.1| - 1.5e-18 67.3 0.1 1.9e-08 34.4 0.0 3.7 4 0 0 4 4 3 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|282165485|ref|YP_003357870.1| - 4.5e-16 58.6 0.0 7.3e-09 35.0 0.0 2.8 2 1 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|282165485|ref|YP_003357870.1| - 6.2e-16 57.7 0.0 1.8e-15 56.3 0.0 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_17 PF13207.1 gi|282165485|ref|YP_003357870.1| - 5.1e-14 53.1 0.0 3.2e-06 27.9 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|282165485|ref|YP_003357870.1| - 1.3e-13 51.3 0.0 1.4e-05 25.1 0.0 2.8 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|282165485|ref|YP_003357870.1| - 2.5e-13 50.3 0.5 0.00032 20.8 0.1 4.3 2 2 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|282165485|ref|YP_003357870.1| - 2.2e-12 46.4 0.1 1.2e-05 24.1 0.0 2.6 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|282165485|ref|YP_003357870.1| - 8.2e-12 45.1 0.0 3.2e-05 23.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|282165485|ref|YP_003357870.1| - 1.9e-11 44.0 0.0 4.2e-05 23.4 0.0 3.1 3 0 0 3 3 3 2 AAA domain Zeta_toxin PF06414.7 gi|282165485|ref|YP_003357870.1| - 5.9e-11 41.8 0.0 9.4e-05 21.6 0.0 2.8 2 0 0 2 2 2 2 Zeta toxin AAA_5 PF07728.9 gi|282165485|ref|YP_003357870.1| - 3.4e-10 39.7 1.2 0.00021 21.0 0.1 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|282165485|ref|YP_003357870.1| - 2.5e-08 34.2 0.1 0.0071 16.6 0.0 3.2 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.12 gi|282165485|ref|YP_003357870.1| - 4.4e-08 32.7 0.0 0.0086 15.5 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|282165485|ref|YP_003357870.1| - 1.8e-07 30.5 0.1 0.0089 15.2 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|282165485|ref|YP_003357870.1| - 2.1e-07 31.0 0.3 0.016 15.1 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_25 PF13481.1 gi|282165485|ref|YP_003357870.1| - 2.8e-07 30.1 5.7 0.13 11.6 0.1 3.8 2 2 1 3 3 3 3 AAA domain RNA_helicase PF00910.17 gi|282165485|ref|YP_003357870.1| - 4.5e-07 30.0 0.0 0.042 14.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_19 PF13245.1 gi|282165485|ref|YP_003357870.1| - 9.7e-07 28.4 8.8 0.0066 16.1 0.2 3.7 5 0 0 5 5 3 2 Part of AAA domain AAA_24 PF13479.1 gi|282165485|ref|YP_003357870.1| - 1.2e-06 28.3 0.3 0.067 12.7 0.0 3.2 3 0 0 3 3 3 2 AAA domain Sigma54_activat PF00158.21 gi|282165485|ref|YP_003357870.1| - 1.6e-06 27.7 0.2 0.15 11.4 0.0 3.5 2 2 0 2 2 2 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|282165485|ref|YP_003357870.1| - 1.8e-06 27.8 1.2 0.16 11.6 0.0 3.9 3 1 1 4 4 3 2 Archaeal ATPase AAA_3 PF07726.6 gi|282165485|ref|YP_003357870.1| - 2.6e-06 27.0 0.0 0.069 12.7 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|282165485|ref|YP_003357870.1| - 7.9e-06 25.6 0.0 0.043 13.3 0.0 2.5 2 1 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|282165485|ref|YP_003357870.1| - 1.5e-05 24.2 0.8 0.85 8.6 0.0 3.6 2 1 1 3 3 3 2 KaiC NACHT PF05729.7 gi|282165485|ref|YP_003357870.1| - 2.4e-05 24.0 0.2 0.74 9.4 0.0 3.8 4 0 0 4 4 4 2 NACHT domain Sigma54_activ_2 PF14532.1 gi|282165485|ref|YP_003357870.1| - 2.7e-05 24.2 0.0 0.31 11.1 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|282165485|ref|YP_003357870.1| - 2.8e-05 24.4 0.0 0.24 11.7 0.0 2.7 2 0 0 2 2 2 2 ABC transporter PhoH PF02562.11 gi|282165485|ref|YP_003357870.1| - 4.3e-05 22.8 0.2 0.15 11.2 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein DUF2075 PF09848.4 gi|282165485|ref|YP_003357870.1| - 5.1e-05 22.4 0.0 0.2 10.5 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|282165485|ref|YP_003357870.1| - 9.6e-05 21.4 0.0 0.25 10.2 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Parvo_NS1 PF01057.12 gi|282165485|ref|YP_003357870.1| - 0.00014 20.8 0.1 0.17 10.7 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Vps4_C PF09336.5 gi|282165485|ref|YP_003357870.1| - 0.00027 20.7 0.3 0.015 15.1 0.0 2.7 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain NB-ARC PF00931.17 gi|282165485|ref|YP_003357870.1| - 0.00027 19.8 0.0 0.47 9.2 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain ATP-synt_ab PF00006.20 gi|282165485|ref|YP_003357870.1| - 0.00037 20.0 0.0 0.43 10.0 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.10 gi|282165485|ref|YP_003357870.1| - 0.00068 19.3 2.6 2.6 7.7 0.0 4.1 3 2 2 5 5 4 1 NTPase Bac_DnaA PF00308.13 gi|282165485|ref|YP_003357870.1| - 0.0008 19.1 0.0 0.89 9.1 0.0 2.8 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_30 PF13604.1 gi|282165485|ref|YP_003357870.1| - 0.0011 18.5 1.1 1.8 8.1 0.0 2.9 3 0 0 3 3 2 2 AAA domain Viral_helicase1 PF01443.13 gi|282165485|ref|YP_003357870.1| - 0.0017 17.9 0.0 0.03 13.8 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase SKI PF01202.17 gi|282165485|ref|YP_003357870.1| - 0.002 18.0 0.3 1.9 8.3 0.0 3.0 3 0 0 3 3 2 1 Shikimate kinase T2SE PF00437.15 gi|282165485|ref|YP_003357870.1| - 0.0051 15.7 0.0 0.7 8.7 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein Guanylate_kin PF00625.16 gi|282165485|ref|YP_003357870.1| - 0.0084 15.5 0.2 3.2 7.1 0.0 3.5 2 1 1 3 3 3 0 Guanylate kinase IPT PF01745.11 gi|282165485|ref|YP_003357870.1| - 0.0088 15.2 0.3 2.1 7.4 0.0 2.5 2 0 0 2 2 2 1 Isopentenyl transferase ResIII PF04851.10 gi|282165485|ref|YP_003357870.1| - 0.012 15.4 0.3 5.2 6.8 0.0 2.9 3 0 0 3 3 2 0 Type III restriction enzyme, res subunit AAA_23 PF13476.1 gi|282165485|ref|YP_003357870.1| - 0.012 15.9 3.7 1.7 8.9 0.0 3.5 3 0 0 3 3 3 0 AAA domain UPF0079 PF02367.12 gi|282165485|ref|YP_003357870.1| - 0.016 14.8 0.0 2.2 7.9 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Miro PF08477.8 gi|282165485|ref|YP_003357870.1| - 0.028 14.8 0.0 8.7 6.8 0.0 3.3 3 0 0 3 3 3 0 Miro-like protein AAA_29 PF13555.1 gi|282165485|ref|YP_003357870.1| - 0.03 13.8 0.0 9.8 5.7 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain KTI12 PF08433.5 gi|282165485|ref|YP_003357870.1| - 0.032 13.4 0.0 7.8 5.6 0.0 2.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Cytidylate_kin2 PF13189.1 gi|282165485|ref|YP_003357870.1| - 0.071 13.0 2.8 2 8.2 0.0 2.9 3 0 0 3 3 2 0 Cytidylate kinase-like family AAA_10 PF12846.2 gi|282165485|ref|YP_003357870.1| - 0.098 12.0 2.9 4.8 6.5 0.0 3.7 4 1 1 5 5 4 0 AAA-like domain KAP_NTPase PF07693.9 gi|282165485|ref|YP_003357870.1| - 0.12 11.3 3.9 1.5 7.6 0.0 3.2 4 1 1 5 5 3 0 KAP family P-loop domain priB_priC PF07445.7 gi|282165485|ref|YP_003357870.1| - 0.59 9.5 4.2 1.6 8.1 1.2 2.7 2 1 1 3 3 3 0 Primosomal replication protein priB and priC HSP20 PF00011.16 gi|282165486|ref|YP_003357871.1| - 2e-13 50.0 0.9 2.1e-12 46.7 0.6 2.0 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|282165486|ref|YP_003357871.1| - 0.00011 22.7 0.0 0.00019 21.8 0.0 1.4 1 0 0 1 1 1 1 CS domain DUF1614 PF07758.6 gi|282165487|ref|YP_003357872.1| - 8.2e-45 152.6 12.8 8.2e-45 152.6 8.9 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) PRC PF05239.11 gi|282165488|ref|YP_003357873.1| - 3.3e-10 39.6 0.2 3.6e-10 39.5 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain AAA PF00004.24 gi|282165489|ref|YP_003357874.1| - 2.9e-97 321.9 0.0 1.2e-49 167.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|282165489|ref|YP_003357874.1| - 8.9e-31 105.6 0.0 5.4e-30 103.1 0.0 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|282165489|ref|YP_003357874.1| - 5.5e-17 61.1 0.0 2.1e-14 52.8 0.0 3.1 2 1 1 3 3 3 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|282165489|ref|YP_003357874.1| - 1e-14 54.1 0.0 1.1e-07 31.1 0.0 3.0 3 1 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|282165489|ref|YP_003357874.1| - 1.6e-14 54.3 0.0 1.2e-06 28.6 0.0 2.8 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|282165489|ref|YP_003357874.1| - 3.3e-14 53.1 0.1 0.00029 20.9 0.0 4.4 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|282165489|ref|YP_003357874.1| - 3.1e-12 47.3 0.0 5.8e-05 23.8 0.0 3.5 3 0 0 3 3 2 2 AAA domain TIP49 PF06068.8 gi|282165489|ref|YP_003357874.1| - 6.6e-12 44.8 0.3 0.00038 19.2 0.0 3.6 4 0 0 4 4 3 2 TIP49 C-terminus AAA_33 PF13671.1 gi|282165489|ref|YP_003357874.1| - 1.2e-11 44.6 0.0 1.6e-05 24.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|282165489|ref|YP_003357874.1| - 1.1e-10 41.7 0.0 3.4e-05 23.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|282165489|ref|YP_003357874.1| - 1.3e-10 41.1 0.4 8.2e-05 22.3 0.0 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|282165489|ref|YP_003357874.1| - 5.8e-10 38.7 0.1 0.00066 19.3 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain AAA_14 PF13173.1 gi|282165489|ref|YP_003357874.1| - 3.8e-09 36.5 0.0 0.003 17.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|282165489|ref|YP_003357874.1| - 6.9e-09 35.0 0.0 0.0024 16.9 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|282165489|ref|YP_003357874.1| - 1e-08 35.5 0.0 0.0012 19.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|282165489|ref|YP_003357874.1| - 1.4e-08 34.3 0.0 0.004 16.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.1 gi|282165489|ref|YP_003357874.1| - 2.7e-08 33.9 0.0 0.0071 16.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|282165489|ref|YP_003357874.1| - 8.6e-08 31.8 6.0 0.025 13.9 0.1 4.3 2 2 1 4 4 4 2 AAA domain Mg_chelatase PF01078.16 gi|282165489|ref|YP_003357874.1| - 2e-06 27.1 0.2 0.073 12.2 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|282165489|ref|YP_003357874.1| - 2.6e-06 27.5 0.0 0.11 12.6 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Arch_ATPase PF01637.13 gi|282165489|ref|YP_003357874.1| - 7.9e-06 25.7 0.0 0.33 10.5 0.0 3.6 2 1 1 3 3 3 2 Archaeal ATPase PhoH PF02562.11 gi|282165489|ref|YP_003357874.1| - 8.6e-06 25.1 0.1 0.22 10.7 0.0 3.1 3 0 0 3 3 2 2 PhoH-like protein NACHT PF05729.7 gi|282165489|ref|YP_003357874.1| - 1.5e-05 24.7 0.7 0.35 10.5 0.0 4.0 5 0 0 5 5 4 2 NACHT domain KaiC PF06745.8 gi|282165489|ref|YP_003357874.1| - 1.9e-05 23.8 0.2 0.59 9.2 0.0 3.6 4 0 0 4 4 4 2 KaiC NB-ARC PF00931.17 gi|282165489|ref|YP_003357874.1| - 3.5e-05 22.8 0.0 0.15 10.8 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain DUF815 PF05673.8 gi|282165489|ref|YP_003357874.1| - 4.6e-05 22.4 0.0 0.28 10.0 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|282165489|ref|YP_003357874.1| - 4.6e-05 22.9 0.0 0.46 9.9 0.0 2.9 3 0 0 3 3 2 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|282165489|ref|YP_003357874.1| - 5e-05 22.9 0.0 0.23 11.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|282165489|ref|YP_003357874.1| - 5.3e-05 23.5 0.0 0.22 11.8 0.0 2.9 2 0 0 2 2 2 2 ABC transporter Sigma54_activ_2 PF14532.1 gi|282165489|ref|YP_003357874.1| - 6.5e-05 23.0 0.0 0.6 10.1 0.0 2.8 2 0 0 2 2 2 2 Sigma-54 interaction domain DUF2075 PF09848.4 gi|282165489|ref|YP_003357874.1| - 9.2e-05 21.5 0.0 0.17 10.7 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|282165489|ref|YP_003357874.1| - 0.00012 21.6 0.1 0.14 11.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|282165489|ref|YP_003357874.1| - 0.00019 21.0 0.2 0.52 9.9 0.0 3.1 2 1 1 3 3 3 1 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|282165489|ref|YP_003357874.1| - 0.00032 20.4 0.4 0.87 9.2 0.0 3.6 3 1 1 4 4 4 1 NTPase Vps4_C PF09336.5 gi|282165489|ref|YP_003357874.1| - 0.00033 20.5 0.2 1.4 8.8 0.0 3.6 3 0 0 3 3 3 1 Vps4 C terminal oligomerisation domain AAA_30 PF13604.1 gi|282165489|ref|YP_003357874.1| - 0.00051 19.6 0.1 0.88 9.1 0.0 2.9 3 0 0 3 3 2 1 AAA domain Parvo_NS1 PF01057.12 gi|282165489|ref|YP_003357874.1| - 0.00057 18.8 0.0 0.74 8.6 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Cytidylate_kin2 PF13189.1 gi|282165489|ref|YP_003357874.1| - 0.0008 19.3 0.1 0.25 11.2 0.0 3.3 3 0 0 3 3 3 1 Cytidylate kinase-like family Viral_helicase1 PF01443.13 gi|282165489|ref|YP_003357874.1| - 0.0011 18.5 0.0 0.12 11.8 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|282165489|ref|YP_003357874.1| - 0.0019 17.7 0.0 0.96 8.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|282165489|ref|YP_003357874.1| - 0.0019 18.0 0.0 2.5 7.8 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SKI PF01202.17 gi|282165489|ref|YP_003357874.1| - 0.0027 17.6 0.0 1.6 8.6 0.0 2.8 3 0 0 3 3 2 1 Shikimate kinase T2SE PF00437.15 gi|282165489|ref|YP_003357874.1| - 0.013 14.4 0.0 3.3 6.5 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein RRM_DME PF15628.1 gi|282165489|ref|YP_003357874.1| - 0.017 14.8 0.0 0.047 13.3 0.0 1.7 1 0 0 1 1 1 0 RRM in Demeter Guanylate_kin PF00625.16 gi|282165489|ref|YP_003357874.1| - 0.017 14.5 0.1 30 4.0 0.0 4.2 3 1 1 4 4 4 0 Guanylate kinase Bac_DnaA PF00308.13 gi|282165489|ref|YP_003357874.1| - 0.018 14.6 0.0 4.6 6.8 0.0 2.6 2 0 0 2 2 2 0 Bacterial dnaA protein KAP_NTPase PF07693.9 gi|282165489|ref|YP_003357874.1| - 0.034 13.1 0.0 5.1 5.9 0.0 3.2 2 2 1 3 3 3 0 KAP family P-loop domain Torsin PF06309.6 gi|282165489|ref|YP_003357874.1| - 0.034 14.0 0.0 8 6.3 0.0 2.5 2 0 0 2 2 2 0 Torsin DAP3 PF10236.4 gi|282165489|ref|YP_003357874.1| - 0.035 13.0 0.0 3.1 6.6 0.0 2.4 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 cobW PF02492.14 gi|282165489|ref|YP_003357874.1| - 0.076 12.4 0.1 8.8 5.7 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CPT PF07931.7 gi|282165489|ref|YP_003357874.1| - 0.081 12.5 0.0 20 4.7 0.0 2.8 3 0 0 3 3 3 0 Chloramphenicol phosphotransferase-like protein AFG1_ATPase PF03969.11 gi|282165489|ref|YP_003357874.1| - 0.096 11.4 0.0 4.2 6.0 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase DUF111 PF01969.12 gi|282165490|ref|YP_003357875.1| - 7.7e-81 271.8 0.1 1e-80 271.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF111 PMT_2 PF13231.1 gi|282165491|ref|YP_003357876.1| - 5.2e-12 45.9 20.6 5.2e-12 45.9 14.3 3.0 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2029 PF09594.5 gi|282165491|ref|YP_003357876.1| - 0.12 11.8 39.3 0.014 14.8 19.3 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF2029) PMT_2 PF13231.1 gi|282165492|ref|YP_003357877.1| - 7.1e-08 32.4 13.9 7.1e-08 32.4 9.6 2.5 2 1 0 2 2 2 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2029 PF09594.5 gi|282165492|ref|YP_003357877.1| - 1.5 8.2 44.0 0.0088 15.5 17.1 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF2029) PMT_2 PF13231.1 gi|282165493|ref|YP_003357878.1| - 1.4e-09 38.0 18.0 1.4e-09 38.0 12.5 2.8 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|282165493|ref|YP_003357878.1| - 0.0008 18.8 11.2 0.0008 18.8 7.8 2.8 2 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PIG-U PF06728.8 gi|282165493|ref|YP_003357878.1| - 0.00099 18.0 8.8 0.0036 16.2 2.9 2.2 2 0 0 2 2 2 2 GPI transamidase subunit PIG-U ALG3 PF05208.8 gi|282165493|ref|YP_003357878.1| - 0.005 16.1 6.0 0.005 16.1 4.1 1.8 2 0 0 2 2 2 1 ALG3 protein NERD PF08378.6 gi|282165494|ref|YP_003357879.1| - 3.6e-15 56.2 0.1 1.3e-14 54.4 0.0 1.9 2 0 0 2 2 2 1 Nuclease-related domain DUF460 PF04312.8 gi|282165495|ref|YP_003357880.1| - 0.0037 16.7 0.1 0.012 15.1 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF460) Rad51 PF08423.6 gi|282165496|ref|YP_003357881.1| - 1e-32 113.0 1.1 1.2e-32 112.8 0.8 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|282165496|ref|YP_003357881.1| - 1.1e-14 54.3 0.0 1.4e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|282165496|ref|YP_003357881.1| - 7.1e-11 41.7 0.7 7.9e-11 41.5 0.5 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|282165496|ref|YP_003357881.1| - 8.8e-11 41.3 3.2 1.7e-10 40.3 2.2 1.5 1 1 0 1 1 1 1 KaiC Zot PF05707.7 gi|282165496|ref|YP_003357881.1| - 2.4e-10 40.1 0.1 2.8e-10 39.9 0.1 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_10 PF12846.2 gi|282165496|ref|YP_003357881.1| - 0.0021 17.5 0.0 0.084 12.2 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_18 PF13238.1 gi|282165496|ref|YP_003357881.1| - 0.0024 18.1 0.0 0.007 16.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|282165496|ref|YP_003357881.1| - 0.0031 16.4 0.6 0.2 10.5 0.0 2.2 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain KTI12 PF08433.5 gi|282165496|ref|YP_003357881.1| - 0.0037 16.5 0.0 0.006 15.8 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 SRP54 PF00448.17 gi|282165496|ref|YP_003357881.1| - 0.0043 16.5 0.1 0.0074 15.7 0.1 1.3 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|282165496|ref|YP_003357881.1| - 0.0082 15.8 0.1 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase CbiA PF01656.18 gi|282165496|ref|YP_003357881.1| - 0.0095 15.3 0.5 0.017 14.5 0.3 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain TrwB_AAD_bind PF10412.4 gi|282165496|ref|YP_003357881.1| - 0.014 14.0 0.0 0.028 13.0 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.1 gi|282165496|ref|YP_003357881.1| - 0.016 14.9 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain IstB_IS21 PF01695.12 gi|282165496|ref|YP_003357881.1| - 0.017 14.5 0.0 0.036 13.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|282165496|ref|YP_003357881.1| - 0.019 14.8 0.1 0.061 13.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|282165496|ref|YP_003357881.1| - 0.034 14.2 0.1 0.058 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NRDD PF13597.1 gi|282165498|ref|YP_003357883.1| - 1.1e-150 502.3 0.0 1.4e-150 502.0 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|282165498|ref|YP_003357883.1| - 1e-10 41.9 0.2 0.0006 20.1 0.0 2.5 2 0 0 2 2 2 2 ATP cone domain Pribosyl_synth PF14572.1 gi|282165498|ref|YP_003357883.1| - 0.13 12.0 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain zf-ribbon_3 PF13248.1 gi|282165498|ref|YP_003357883.1| - 0.21 10.8 2.2 0.45 9.7 1.6 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF1272 PF06906.6 gi|282165498|ref|YP_003357883.1| - 0.32 10.8 1.5 0.75 9.6 1.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) Radical_SAM PF04055.16 gi|282165499|ref|YP_003357884.1| - 3e-17 63.2 0.0 4.8e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|282165499|ref|YP_003357884.1| - 1.7e-12 47.6 0.0 2.9e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|282165499|ref|YP_003357884.1| - 2e-09 37.5 0.0 4e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain PADR1 PF08063.7 gi|282165499|ref|YP_003357884.1| - 0.096 12.1 0.1 0.19 11.1 0.1 1.4 1 0 0 1 1 1 0 PADR1 (NUC008) domain DUF2207 PF09972.4 gi|282165500|ref|YP_003357885.1| - 0.022 13.3 0.1 0.022 13.3 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2651 PF10852.3 gi|282165500|ref|YP_003357885.1| - 0.12 12.6 3.4 0.22 11.8 2.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2651) DUF1469 PF07332.6 gi|282165500|ref|YP_003357885.1| - 0.94 9.2 5.3 1.6 8.5 3.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) RNA_binding PF01877.12 gi|282165501|ref|YP_003357886.1| - 1.1e-27 96.3 0.1 2.8e-27 95.1 0.0 1.7 2 0 0 2 2 2 1 RNA binding AAA_18 PF13238.1 gi|282165501|ref|YP_003357886.1| - 2e-17 63.6 0.1 4.9e-17 62.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|282165501|ref|YP_003357886.1| - 2.2e-10 41.4 0.2 5.9e-10 40.0 0.1 1.8 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|282165501|ref|YP_003357886.1| - 2.3e-08 34.0 0.0 5.1e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|282165501|ref|YP_003357886.1| - 4.8e-05 23.2 0.1 0.00011 22.0 0.1 1.6 1 1 0 1 1 1 1 Adenylate kinase Zeta_toxin PF06414.7 gi|282165501|ref|YP_003357886.1| - 0.0026 16.8 0.0 0.0038 16.3 0.0 1.4 1 1 0 1 1 1 1 Zeta toxin LexA_DNA_bind PF01726.11 gi|282165501|ref|YP_003357886.1| - 0.009 15.5 0.0 5.9 6.5 0.0 3.1 3 0 0 3 3 3 1 LexA DNA binding domain AP_endonuc_2 PF01261.19 gi|282165502|ref|YP_003357887.1| - 1.5e-28 99.5 0.1 1.8e-28 99.2 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel MFS_1 PF07690.11 gi|282165503|ref|YP_003357888.1| - 6.9e-32 110.5 58.1 2.4e-24 85.7 20.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|282165503|ref|YP_003357888.1| - 2.4e-06 26.4 17.3 1.5e-05 23.7 1.9 2.8 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|282165503|ref|YP_003357888.1| - 1.6e-05 23.5 27.8 3.9e-05 22.2 19.3 1.7 1 1 0 1 1 1 1 MFS/sugar transport protein YtpI PF14007.1 gi|282165503|ref|YP_003357888.1| - 0.0041 17.0 0.2 0.0041 17.0 0.1 2.6 2 1 1 3 3 3 1 YtpI-like protein MFS_1_like PF12832.2 gi|282165503|ref|YP_003357888.1| - 0.02 14.6 3.6 0.028 14.2 0.1 2.8 2 0 0 2 2 2 0 MFS_1 like family OATP PF03137.15 gi|282165503|ref|YP_003357888.1| - 0.52 8.2 15.9 0.25 9.3 0.6 2.9 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Epiglycanin_C PF14654.1 gi|282165503|ref|YP_003357888.1| - 1.5 8.8 5.4 1.3 9.1 0.6 2.7 3 0 0 3 3 3 0 Mucin, catalytic, TM and cytoplasmic tail region MFS_1 PF07690.11 gi|282165504|ref|YP_003357889.1| - 2.9e-37 128.2 73.0 1.5e-31 109.4 28.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|282165504|ref|YP_003357889.1| - 0.00013 20.4 27.5 0.00013 20.4 19.1 2.8 1 1 1 2 2 2 1 MFS/sugar transport protein MFS_1_like PF12832.2 gi|282165504|ref|YP_003357889.1| - 0.00014 21.5 5.8 0.0033 17.1 0.2 3.8 3 0 0 3 3 3 1 MFS_1 like family TINF2_N PF14973.1 gi|282165505|ref|YP_003357890.1| - 0.078 13.1 0.1 0.17 12.0 0.0 1.6 2 0 0 2 2 2 0 TERF1-interacting nuclear factor 2 N-terminus Lactamase_B_2 PF12706.2 gi|282165506|ref|YP_003357891.1| - 1.7e-28 99.5 0.0 2.2e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|282165506|ref|YP_003357891.1| - 4.7e-15 55.7 0.1 2.1e-14 53.6 0.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|282165506|ref|YP_003357891.1| - 4.7e-06 25.9 0.0 1.5e-05 24.4 0.0 1.7 2 0 0 2 2 2 1 tRNase Z endonuclease CarboxypepD_reg PF13620.1 gi|282165507|ref|YP_003357892.1| - 1.7e-06 27.9 2.8 5.8e-06 26.2 2.0 1.9 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Dioxygenase_C PF00775.16 gi|282165507|ref|YP_003357892.1| - 0.012 14.9 0.3 0.018 14.3 0.2 1.2 1 0 0 1 1 1 0 Dioxygenase fn3_3 PF14686.1 gi|282165507|ref|YP_003357892.1| - 0.085 12.9 0.2 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain II Hydrolase PF00702.21 gi|282165508|ref|YP_003357893.1| - 0.00051 20.5 1.4 0.0012 19.3 0.7 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.16 gi|282165509|ref|YP_003357894.1| - 6.5e-18 65.4 0.0 2.3e-17 63.6 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.2 gi|282165509|ref|YP_003357894.1| - 0.00048 20.0 0.0 0.0014 18.5 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|282165509|ref|YP_003357894.1| - 0.0015 18.1 0.0 0.025 14.2 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|282165509|ref|YP_003357894.1| - 0.027 14.6 0.0 0.45 10.7 0.0 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix domain Cupredoxin_1 PF13473.1 gi|282165510|ref|YP_003357895.1| - 2.7e-17 62.5 0.0 3.1e-17 62.3 0.0 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|282165510|ref|YP_003357895.1| - 3.1e-15 56.1 0.7 1.7e-13 50.6 0.5 2.0 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Copper-bind PF00127.15 gi|282165511|ref|YP_003357896.1| - 1.2e-09 38.3 0.6 8.8e-08 32.2 0.4 2.1 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|282165511|ref|YP_003357896.1| - 6.9e-09 35.5 0.1 9.3e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain DUF4402 PF14352.1 gi|282165511|ref|YP_003357896.1| - 0.0017 18.8 4.5 0.0022 18.4 3.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4402) FAP PF07174.6 gi|282165511|ref|YP_003357896.1| - 0.0041 16.4 6.5 0.0051 16.1 4.5 1.1 1 0 0 1 1 1 1 Fibronectin-attachment protein (FAP) MpPF26 PF07666.6 gi|282165512|ref|YP_003357897.1| - 0.15 11.9 5.9 0.19 11.6 4.1 1.2 1 0 0 1 1 1 0 M penetrans paralogue family 26 Cytochrom_B561 PF03188.11 gi|282165512|ref|YP_003357897.1| - 0.42 10.4 7.9 0.65 9.8 5.5 1.3 1 1 0 1 1 1 0 Eukaryotic cytochrome b561 Ferric_reduct PF01794.14 gi|282165512|ref|YP_003357897.1| - 0.58 10.2 9.1 0.88 9.6 6.1 1.4 1 1 1 2 2 2 0 Ferric reductase like transmembrane component CxxCxxCC PF03692.10 gi|282165513|ref|YP_003357898.1| - 1.9e-09 37.8 0.2 1.4e-08 35.1 0.1 2.0 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain AhpC-TSA PF00578.16 gi|282165514|ref|YP_003357899.1| - 4.4e-25 87.7 0.0 5.2e-25 87.5 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|282165514|ref|YP_003357899.1| - 4.2e-12 45.8 0.0 5.3e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|282165514|ref|YP_003357899.1| - 0.0056 16.7 0.0 0.0085 16.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA_2 PF13911.1 gi|282165514|ref|YP_003357899.1| - 0.038 13.9 0.0 0.06 13.2 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme CxxCxxCC PF03692.10 gi|282165515|ref|YP_003357900.1| - 1.6e-12 47.6 0.3 4.2e-12 46.3 0.2 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain MTHFR_C PF12225.3 gi|282165515|ref|YP_003357900.1| - 0.0059 16.0 1.4 1.4 8.4 0.2 2.2 2 0 0 2 2 2 2 Methylene-tetrahydrofolate reductase C terminal GATase PF00117.23 gi|282165516|ref|YP_003357901.1| - 1.1e-36 126.1 0.0 1.2e-36 125.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|282165516|ref|YP_003357901.1| - 2.1e-15 56.7 0.1 2.2e-14 53.4 0.0 2.3 1 1 1 2 2 2 1 Peptidase C26 DUF91 PF01939.11 gi|282165517|ref|YP_003357902.1| - 0.012 14.8 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF91 TrmB PF01978.14 gi|282165517|ref|YP_003357902.1| - 0.083 12.6 0.0 0.33 10.6 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB tRNA_anti-codon PF01336.20 gi|282165519|ref|YP_003357904.1| - 0.018 14.8 2.8 0.032 14.0 0.0 2.5 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain DUF164 PF02591.10 gi|282165519|ref|YP_003357904.1| - 0.035 13.9 0.0 0.074 12.8 0.0 1.6 1 0 0 1 1 1 0 Putative zinc ribbon domain tRNA_anti-codon PF01336.20 gi|282165520|ref|YP_003357905.1| - 0.018 14.8 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Rav1p_C PF12234.3 gi|282165520|ref|YP_003357905.1| - 0.11 10.5 0.0 0.13 10.3 0.0 1.1 1 0 0 1 1 1 0 RAVE protein 1 C terminal CarboxypepD_reg PF13620.1 gi|282165521|ref|YP_003357906.1| - 4.6e-15 55.4 5.3 2.4e-06 27.4 0.1 3.9 3 1 0 3 3 3 3 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282165521|ref|YP_003357906.1| - 2.6e-07 30.5 0.7 0.0033 17.4 0.0 3.4 3 0 0 3 3 3 2 Domain of unknown function (DUF4480) MG1 PF11974.3 gi|282165521|ref|YP_003357906.1| - 0.00021 21.7 0.4 1 9.9 0.0 2.8 2 0 0 2 2 2 2 Alpha-2-macroglobulin MG1 domain DUF4198 PF10670.4 gi|282165521|ref|YP_003357906.1| - 0.0015 18.6 0.2 1.2 9.1 0.0 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF4198) Dioxygenase_C PF00775.16 gi|282165521|ref|YP_003357906.1| - 0.0029 16.9 0.2 0.2 10.8 0.0 3.0 2 1 0 2 2 2 1 Dioxygenase Big_1 PF02369.11 gi|282165521|ref|YP_003357906.1| - 0.0044 16.9 0.7 0.18 11.6 0.1 2.6 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) DUF1416 PF07210.7 gi|282165521|ref|YP_003357906.1| - 0.0097 15.5 0.1 3.1 7.4 0.0 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF1416) phage_tail_N PF08400.5 gi|282165521|ref|YP_003357906.1| - 0.011 15.4 0.4 15 5.3 0.0 3.4 3 0 0 3 3 3 0 Prophage tail fibre N-terminal TRSP PF12500.3 gi|282165521|ref|YP_003357906.1| - 0.064 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 TRSP domain C terminus to PRTase_2 DUF824 PF05688.6 gi|282165521|ref|YP_003357906.1| - 0.1 12.2 0.1 1.5 8.5 0.1 2.4 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) PQQ_2 PF13360.1 gi|282165522|ref|YP_003357907.1| - 4.4e-11 42.7 1.2 2.8e-05 23.6 0.0 4.0 2 2 0 2 2 2 2 PQQ-like domain HTH_24 PF13412.1 gi|282165522|ref|YP_003357907.1| - 1.9e-10 39.9 0.2 1.3e-07 30.8 0.2 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding PQQ_3 PF13570.1 gi|282165522|ref|YP_003357907.1| - 1.1e-07 31.9 18.2 0.0033 17.6 0.0 8.3 7 2 0 7 7 7 1 PQQ-like domain PQQ PF01011.16 gi|282165522|ref|YP_003357907.1| - 1.2e-05 24.6 3.7 2.4 7.8 0.0 6.7 7 0 0 7 7 7 1 PQQ enzyme repeat MarR_2 PF12802.2 gi|282165522|ref|YP_003357907.1| - 3.3e-05 23.4 0.0 0.0016 18.0 0.0 2.6 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|282165522|ref|YP_003357907.1| - 8.9e-05 22.1 0.0 0.02 14.6 0.0 2.8 2 1 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|282165522|ref|YP_003357907.1| - 0.00014 21.5 0.0 0.11 12.3 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|282165522|ref|YP_003357907.1| - 0.00017 21.2 0.1 0.00052 19.6 0.1 1.8 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|282165522|ref|YP_003357907.1| - 0.00019 21.0 0.0 0.019 14.6 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|282165522|ref|YP_003357907.1| - 0.001 18.7 0.0 0.0027 17.3 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|282165522|ref|YP_003357907.1| - 0.0024 17.4 0.0 0.93 9.1 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain NUMOD1 PF07453.8 gi|282165522|ref|YP_003357907.1| - 0.015 15.1 0.6 0.2 11.5 0.0 3.0 3 0 0 3 3 3 0 NUMOD1 domain GerE PF00196.14 gi|282165522|ref|YP_003357907.1| - 0.02 14.2 0.0 0.046 13.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Fe_dep_repress PF01325.14 gi|282165522|ref|YP_003357907.1| - 0.022 14.6 0.0 0.05 13.5 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|282165522|ref|YP_003357907.1| - 0.022 14.3 0.0 0.079 12.6 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_36 PF13730.1 gi|282165522|ref|YP_003357907.1| - 0.041 14.0 0.0 0.12 12.4 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|282165522|ref|YP_003357907.1| - 0.064 12.8 0.0 1.2 8.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|282165522|ref|YP_003357907.1| - 0.086 12.3 0.0 1.3 8.6 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease HTH_3 PF01381.17 gi|282165522|ref|YP_003357907.1| - 0.1 12.4 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_Tnp_1 PF01527.15 gi|282165522|ref|YP_003357907.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Transposase DUF3130 PF11328.3 gi|282165522|ref|YP_003357907.1| - 0.14 12.2 0.8 12 6.0 0.0 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3130 CarboxypepD_reg PF13620.1 gi|282165523|ref|YP_003357908.1| - 2e-10 40.5 3.7 3.5e-10 39.8 2.6 1.5 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282165523|ref|YP_003357908.1| - 7.8e-06 25.8 0.8 3.9e-05 23.6 0.6 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4480) DUF1416 PF07210.7 gi|282165523|ref|YP_003357908.1| - 6.5e-05 22.4 0.1 9.8e-05 21.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1416) Big_1 PF02369.11 gi|282165523|ref|YP_003357908.1| - 0.00019 21.3 0.3 0.0003 20.6 0.1 1.4 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 1) Dioxygenase_C PF00775.16 gi|282165523|ref|YP_003357908.1| - 0.00046 19.5 0.1 0.00071 18.8 0.0 1.5 1 1 0 1 1 1 1 Dioxygenase Cna_B PF05738.8 gi|282165523|ref|YP_003357908.1| - 0.016 14.9 0.1 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 Cna protein B-type domain DUF4198 PF10670.4 gi|282165523|ref|YP_003357908.1| - 0.02 14.8 0.3 0.061 13.3 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4198) MG1 PF11974.3 gi|282165523|ref|YP_003357908.1| - 0.021 15.3 0.2 0.027 15.0 0.2 1.3 1 1 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain DUF824 PF05688.6 gi|282165523|ref|YP_003357908.1| - 0.035 13.7 0.1 0.068 12.8 0.1 1.4 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) CarboxypepD_reg PF13620.1 gi|282165524|ref|YP_003357909.1| - 8.7e-10 38.5 0.4 6.6e-09 35.7 0.1 2.2 1 1 1 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282165524|ref|YP_003357909.1| - 1.2e-05 25.2 0.1 3.1e-05 23.9 0.1 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4480) Dioxygenase_C PF00775.16 gi|282165524|ref|YP_003357909.1| - 0.00095 18.4 0.0 0.003 16.8 0.0 1.7 1 1 0 1 1 1 1 Dioxygenase Herpes_gE PF02480.11 gi|282165524|ref|YP_003357909.1| - 0.012 13.8 0.2 0.015 13.5 0.2 1.1 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E Big_1 PF02369.11 gi|282165524|ref|YP_003357909.1| - 0.027 14.3 0.1 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) Pex14_N PF04695.8 gi|282165524|ref|YP_003357909.1| - 0.061 13.3 0.1 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region A2M PF00207.17 gi|282165524|ref|YP_003357909.1| - 0.094 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Alpha-2-macroglobulin family Cna_B PF05738.8 gi|282165524|ref|YP_003357909.1| - 0.11 12.2 0.8 1.2 8.9 0.1 2.4 2 1 0 2 2 2 0 Cna protein B-type domain PQQ_2 PF13360.1 gi|282165525|ref|YP_003357910.1| - 2.5e-15 56.5 0.3 4.7e-07 29.5 0.2 3.6 2 2 0 2 2 2 2 PQQ-like domain HTH_24 PF13412.1 gi|282165525|ref|YP_003357910.1| - 1.1e-13 50.2 0.1 3.8e-07 29.3 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|282165525|ref|YP_003357910.1| - 1e-10 41.1 0.0 7.1e-05 22.3 0.0 2.9 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|282165525|ref|YP_003357910.1| - 1.5e-10 40.7 0.4 8.7e-06 25.4 0.2 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|282165525|ref|YP_003357910.1| - 5.2e-09 35.6 0.1 0.00071 19.1 0.0 2.5 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|282165525|ref|YP_003357910.1| - 1.7e-06 27.5 0.2 0.00069 19.2 0.1 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|282165525|ref|YP_003357910.1| - 4.6e-06 26.1 0.0 0.016 14.8 0.0 2.5 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR PF01047.17 gi|282165525|ref|YP_003357910.1| - 4.3e-05 23.1 0.0 0.046 13.4 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_34 PF13601.1 gi|282165525|ref|YP_003357910.1| - 0.00072 19.5 0.0 0.13 12.3 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|282165525|ref|YP_003357910.1| - 0.0014 18.0 0.0 0.044 13.2 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 TFIIE_alpha PF02002.12 gi|282165525|ref|YP_003357910.1| - 0.0015 18.0 0.0 0.074 12.5 0.0 2.3 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_23 PF13384.1 gi|282165525|ref|YP_003357910.1| - 0.0016 17.9 0.0 0.82 9.4 0.0 2.9 2 0 0 2 2 2 1 Homeodomain-like domain GerE PF00196.14 gi|282165525|ref|YP_003357910.1| - 0.0068 15.7 0.0 0.23 10.7 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family PQQ_3 PF13570.1 gi|282165525|ref|YP_003357910.1| - 0.011 16.0 29.0 1.3 9.4 0.1 7.9 8 0 0 8 8 7 0 PQQ-like domain HTH_AsnC-type PF13404.1 gi|282165525|ref|YP_003357910.1| - 0.012 15.1 0.0 2.9 7.5 0.0 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|282165525|ref|YP_003357910.1| - 0.035 13.7 0.0 2 8.1 0.0 2.7 2 0 0 2 2 2 0 HTH domain Rrf2 PF02082.15 gi|282165525|ref|YP_003357910.1| - 0.044 13.9 0.2 0.63 10.1 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator Peptidase_MA_2 PF13485.1 gi|282165526|ref|YP_003357911.1| - 1e-21 77.3 0.0 1.7e-21 76.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase MA superfamily CarboxypepD_reg PF13620.1 gi|282165526|ref|YP_003357911.1| - 1.5e-13 50.5 1.2 2.5e-13 49.8 0.8 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain phage_tail_N PF08400.5 gi|282165526|ref|YP_003357911.1| - 1.2e-05 25.0 0.1 2.2e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 Prophage tail fibre N-terminal Big_1 PF02369.11 gi|282165526|ref|YP_003357911.1| - 0.026 14.4 0.1 0.06 13.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) TGT_C2 PF14810.1 gi|282165527|ref|YP_003357912.1| - 1.8e-30 104.6 0.2 3e-30 103.8 0.1 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|282165527|ref|YP_003357912.1| - 7.4e-18 64.0 0.1 5.5e-17 61.2 0.0 2.0 2 0 0 2 2 2 1 PUA domain UPF0020 PF01170.13 gi|282165529|ref|YP_003357914.1| - 2.2e-28 99.0 0.0 3.1e-28 98.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|282165529|ref|YP_003357914.1| - 3.8e-11 43.0 0.0 6.6e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|282165529|ref|YP_003357914.1| - 5.8e-10 39.2 0.1 1.5e-09 37.8 0.0 1.7 2 0 0 2 2 2 1 THUMP domain Methyltransf_31 PF13847.1 gi|282165529|ref|YP_003357914.1| - 1.3e-06 28.0 0.0 2.5e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|282165529|ref|YP_003357914.1| - 8.9e-05 22.9 0.1 0.00079 19.8 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|282165529|ref|YP_003357914.1| - 0.00024 20.6 0.0 0.048 13.1 0.0 2.3 2 0 0 2 2 2 2 DNA methylase Ubie_methyltran PF01209.13 gi|282165529|ref|YP_003357914.1| - 0.00094 18.3 0.3 0.011 14.8 0.2 2.4 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|282165529|ref|YP_003357914.1| - 0.0054 16.1 0.0 0.01 15.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain N6_Mtase PF02384.11 gi|282165529|ref|YP_003357914.1| - 0.0087 15.1 0.0 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_15 PF09445.5 gi|282165529|ref|YP_003357914.1| - 0.044 13.3 0.0 0.07 12.6 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|282165529|ref|YP_003357914.1| - 0.082 12.2 0.0 0.17 11.2 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical protein 95 ACT_6 PF13740.1 gi|282165530|ref|YP_003357915.1| - 7.6e-17 60.8 1.3 8.5e-17 60.6 0.9 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|282165530|ref|YP_003357915.1| - 5.8e-10 38.4 0.6 7.6e-10 38.0 0.4 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|282165530|ref|YP_003357915.1| - 1.4e-09 38.1 0.9 2e-09 37.6 0.7 1.1 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|282165530|ref|YP_003357915.1| - 3.2e-05 23.3 0.1 4.9e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 ACT domain DsrH PF04077.7 gi|282165530|ref|YP_003357915.1| - 0.027 14.1 0.1 0.032 13.9 0.1 1.2 1 0 0 1 1 1 0 DsrH like protein DUF711 PF05167.7 gi|282165531|ref|YP_003357916.1| - 6.2e-169 561.9 5.3 7.7e-169 561.6 3.6 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Pyridox_ox_2 PF12900.2 gi|282165532|ref|YP_003357917.1| - 4.7e-27 94.5 0.0 5.3e-27 94.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|282165532|ref|YP_003357917.1| - 3.6e-16 58.9 0.0 6.2e-16 58.1 0.0 1.4 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF4349 PF14257.1 gi|282165533|ref|YP_003357918.1| - 0.052 12.7 0.0 0.063 12.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) PmbA_TldD PF01523.11 gi|282165534|ref|YP_003357919.1| - 1.9e-64 217.7 1.5 2.3e-64 217.4 1.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|282165535|ref|YP_003357920.1| - 6.2e-74 248.9 0.2 7.6e-74 248.6 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.8 gi|282165536|ref|YP_003357921.1| - 7.5e-33 113.5 2.8 1.2e-32 112.9 2.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|282165536|ref|YP_003357921.1| - 9.8e-32 110.2 0.1 1.4e-22 80.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|282165536|ref|YP_003357921.1| - 1.2e-17 63.7 0.2 1.2e-10 40.8 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|282165536|ref|YP_003357921.1| - 1e-16 60.8 0.3 1.5e-09 37.5 0.1 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.1 gi|282165536|ref|YP_003357921.1| - 1e-11 44.4 0.3 2.7e-11 43.0 0.2 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|282165536|ref|YP_003357921.1| - 3.6e-11 42.9 0.0 0.00028 20.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|282165536|ref|YP_003357921.1| - 7.3e-11 41.4 0.3 0.0012 17.7 0.0 3.2 3 0 0 3 3 3 3 MCM2/3/5 family AAA PF00004.24 gi|282165536|ref|YP_003357921.1| - 1e-07 32.1 0.0 0.0062 16.7 0.0 3.2 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|282165536|ref|YP_003357921.1| - 8.2e-07 29.2 0.0 0.0017 18.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|282165536|ref|YP_003357921.1| - 8.5e-07 29.1 0.0 0.04 13.9 0.0 2.8 3 0 0 3 3 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|282165536|ref|YP_003357921.1| - 2.9e-06 26.4 0.1 0.0043 16.1 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|282165536|ref|YP_003357921.1| - 2e-05 24.9 0.0 5.3e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|282165536|ref|YP_003357921.1| - 0.00012 21.6 0.1 0.44 10.1 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|282165536|ref|YP_003357921.1| - 0.00044 19.5 0.2 0.0016 17.7 0.0 1.9 2 1 0 2 2 2 1 PhoH-like protein TIP49 PF06068.8 gi|282165536|ref|YP_003357921.1| - 0.00045 19.0 0.1 0.29 9.8 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_19 PF13245.1 gi|282165536|ref|YP_003357921.1| - 0.00048 19.8 0.0 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|282165536|ref|YP_003357921.1| - 0.0016 18.0 0.1 0.0045 16.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|282165536|ref|YP_003357921.1| - 0.0024 17.5 0.0 0.017 14.7 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA_16 PF13191.1 gi|282165536|ref|YP_003357921.1| - 0.003 17.5 0.0 0.15 12.0 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain Parvo_NS1 PF01057.12 gi|282165536|ref|YP_003357921.1| - 0.0056 15.5 0.0 0.0091 14.8 0.0 1.2 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 T2SE PF00437.15 gi|282165536|ref|YP_003357921.1| - 0.0057 15.6 0.0 0.012 14.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_33 PF13671.1 gi|282165536|ref|YP_003357921.1| - 0.0068 16.2 0.1 0.023 14.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|282165536|ref|YP_003357921.1| - 0.0084 15.5 0.0 0.041 13.2 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_2 PF07724.9 gi|282165536|ref|YP_003357921.1| - 0.015 15.1 0.0 7.9 6.3 0.0 2.7 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) ABC_tran PF00005.22 gi|282165536|ref|YP_003357921.1| - 0.017 15.3 0.0 0.071 13.4 0.0 2.0 2 0 0 2 2 2 0 ABC transporter TrwB_AAD_bind PF10412.4 gi|282165536|ref|YP_003357921.1| - 0.021 13.4 0.0 0.035 12.7 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF815 PF05673.8 gi|282165536|ref|YP_003357921.1| - 0.023 13.6 0.0 0.048 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_10 PF12846.2 gi|282165536|ref|YP_003357921.1| - 0.024 14.0 0.0 0.12 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|282165536|ref|YP_003357921.1| - 0.034 13.6 0.0 0.087 12.2 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF4191 PF13829.1 gi|282165536|ref|YP_003357921.1| - 0.036 13.1 1.6 0.069 12.2 1.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) AAA_17 PF13207.1 gi|282165536|ref|YP_003357921.1| - 0.038 14.7 0.0 0.12 13.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|282165536|ref|YP_003357921.1| - 0.039 13.9 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.6 gi|282165536|ref|YP_003357921.1| - 0.047 12.3 0.1 2.6 6.6 0.0 2.3 2 0 0 2 2 2 0 PrkA AAA domain KTI12 PF08433.5 gi|282165536|ref|YP_003357921.1| - 0.077 12.1 0.1 0.17 11.0 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|282165536|ref|YP_003357921.1| - 0.085 11.9 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin DUF2075 PF09848.4 gi|282165536|ref|YP_003357921.1| - 0.12 11.3 0.0 0.2 10.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ActA PF05058.7 gi|282165536|ref|YP_003357921.1| - 0.2 9.6 0.1 0.31 8.9 0.1 1.2 1 0 0 1 1 1 0 ActA Protein NPCBM_assoc PF10633.4 gi|282165537|ref|YP_003357922.1| - 2.3e-12 46.7 0.6 7.1e-05 22.7 0.0 4.5 5 0 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|282165537|ref|YP_003357922.1| - 4.3e-06 26.7 0.0 0.8 9.7 0.0 3.8 3 1 0 3 3 3 2 CARDB MMPL PF03176.10 gi|282165538|ref|YP_003357923.1| - 1.9e-48 164.9 16.2 2.4e-24 85.6 1.9 2.5 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|282165538|ref|YP_003357923.1| - 2.1e-08 33.7 22.3 1.3e-07 31.2 2.9 3.2 3 1 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|282165538|ref|YP_003357923.1| - 0.0049 16.0 9.6 0.0049 16.0 6.6 3.8 4 0 0 4 4 4 2 Protein export membrane protein Patched PF02460.13 gi|282165538|ref|YP_003357923.1| - 0.062 11.2 29.9 0.036 11.9 11.3 2.5 3 0 0 3 3 3 0 Patched family DUF106 PF01956.11 gi|282165538|ref|YP_003357923.1| - 4.5 6.7 15.5 0.048 13.1 4.6 2.3 2 0 0 2 2 2 0 Integral membrane protein DUF106 HD PF01966.17 gi|282165539|ref|YP_003357924.1| - 6.9e-05 22.8 0.8 0.00014 21.8 0.5 1.7 1 1 0 1 1 1 1 HD domain HTH_3 PF01381.17 gi|282165540|ref|YP_003357925.1| - 1.3e-11 44.0 0.2 2.5e-11 43.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|282165540|ref|YP_003357925.1| - 3e-08 33.5 0.0 7.9e-08 32.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|282165540|ref|YP_003357925.1| - 3.1e-05 24.0 0.0 7.3e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|282165540|ref|YP_003357925.1| - 6.7e-05 22.4 0.0 0.00022 20.8 0.0 1.9 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.1 gi|282165540|ref|YP_003357925.1| - 0.0027 17.3 0.1 0.0069 16.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain FeoC PF09012.5 gi|282165540|ref|YP_003357925.1| - 0.027 14.1 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator MarR PF01047.17 gi|282165540|ref|YP_003357925.1| - 0.1 12.2 0.0 0.77 9.5 0.0 2.1 2 0 0 2 2 2 0 MarR family DUF1743 PF08489.6 gi|282165541|ref|YP_003357926.1| - 5.4e-41 139.0 0.0 9.1e-41 138.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|282165541|ref|YP_003357926.1| - 0.00042 20.0 0.1 0.00089 19.0 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|282165541|ref|YP_003357926.1| - 0.0013 18.3 0.5 0.0031 17.1 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.9 gi|282165541|ref|YP_003357926.1| - 0.0058 16.0 0.1 0.012 15.1 0.1 1.5 1 0 0 1 1 1 1 Rad50 zinc hook motif tRNA_anti_2 PF13742.1 gi|282165541|ref|YP_003357926.1| - 0.019 14.8 0.0 0.037 13.8 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Zn_Tnp_IS1595 PF12760.2 gi|282165541|ref|YP_003357926.1| - 0.047 13.4 1.1 0.15 11.8 0.7 1.9 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|282165541|ref|YP_003357926.1| - 0.12 12.3 4.4 4.1 7.4 0.1 3.0 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|282165541|ref|YP_003357926.1| - 0.32 10.5 4.4 0.37 10.3 1.1 2.6 2 1 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|282165541|ref|YP_003357926.1| - 0.43 10.3 5.3 0.44 10.2 1.3 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|282165541|ref|YP_003357926.1| - 0.86 9.4 5.0 0.51 10.2 0.4 2.6 3 0 0 3 3 3 0 Double zinc ribbon zf-ISL3 PF14690.1 gi|282165541|ref|YP_003357926.1| - 0.86 9.6 6.4 44 4.2 0.4 2.8 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|282165541|ref|YP_003357926.1| - 1.1 8.8 4.5 2.3 7.7 3.1 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain CBS PF00571.23 gi|282165542|ref|YP_003357927.1| - 1.1e-48 162.7 17.3 1.6e-14 53.4 0.6 4.2 4 0 0 4 4 4 4 CBS domain Usp PF00582.21 gi|282165543|ref|YP_003357928.1| - 1e-36 126.1 0.1 1.2e-36 125.9 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|282165543|ref|YP_003357928.1| - 0.021 15.3 0.2 0.028 14.9 0.1 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Amidohydro_1 PF01979.15 gi|282165544|ref|YP_003357929.1| - 2.3e-24 86.6 0.4 8.9e-24 84.7 0.3 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|282165544|ref|YP_003357929.1| - 3e-10 40.6 7.0 1.4e-09 38.4 4.9 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|282165544|ref|YP_003357929.1| - 3.6e-09 36.3 5.0 9.6e-08 31.6 0.6 2.4 1 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|282165544|ref|YP_003357929.1| - 2.5e-05 23.3 0.0 3.9e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|282165544|ref|YP_003357929.1| - 7.3e-05 22.5 0.9 0.0054 16.5 0.0 2.6 2 0 0 2 2 2 1 Amidohydrolase Sec61_beta PF03911.11 gi|282165545|ref|YP_003357930.1| - 1.5e-10 40.6 0.1 1.9e-10 40.3 0.1 1.1 1 0 0 1 1 1 1 Sec61beta family MMR_HSR1 PF01926.18 gi|282165547|ref|YP_003357932.1| - 1.2e-15 57.4 0.0 1.6e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|282165547|ref|YP_003357932.1| - 1.5e-12 47.0 0.1 1.6e-11 43.6 0.1 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|282165547|ref|YP_003357932.1| - 1.2e-07 31.3 0.0 0.0001 21.7 0.0 2.1 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain MobB PF03205.9 gi|282165547|ref|YP_003357932.1| - 0.00062 19.4 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|282165547|ref|YP_003357932.1| - 0.0014 17.7 0.1 0.0031 16.7 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|282165547|ref|YP_003357932.1| - 0.0024 18.3 0.4 0.037 14.5 0.3 2.5 1 1 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|282165547|ref|YP_003357932.1| - 0.015 14.8 0.2 0.27 10.7 0.0 2.2 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|282165547|ref|YP_003357932.1| - 0.02 14.6 0.1 0.044 13.6 0.1 1.5 1 1 1 2 2 2 0 Dynamin family ABC_tran PF00005.22 gi|282165547|ref|YP_003357932.1| - 0.03 14.6 0.0 0.038 14.2 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.1 gi|282165547|ref|YP_003357932.1| - 0.033 13.7 0.0 0.06 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|282165547|ref|YP_003357932.1| - 0.034 13.6 0.1 0.083 12.3 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.5 gi|282165547|ref|YP_003357932.1| - 0.039 13.1 0.1 0.13 11.4 0.0 1.8 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit RNA_helicase PF00910.17 gi|282165547|ref|YP_003357932.1| - 0.049 13.8 0.1 0.44 10.7 0.0 2.1 2 0 0 2 2 2 0 RNA helicase Ras PF00071.17 gi|282165547|ref|YP_003357932.1| - 0.065 12.6 0.3 1 8.7 0.0 2.1 2 0 0 2 2 2 0 Ras family ArgK PF03308.11 gi|282165547|ref|YP_003357932.1| - 0.07 11.8 0.1 2.8 6.6 0.0 2.1 2 0 0 2 2 2 0 ArgK protein Arch_ATPase PF01637.13 gi|282165547|ref|YP_003357932.1| - 0.096 12.3 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase Arf PF00025.16 gi|282165547|ref|YP_003357932.1| - 0.11 11.7 0.6 1 8.5 0.4 2.3 1 1 0 1 1 1 0 ADP-ribosylation factor family ATP-grasp PF02222.17 gi|282165548|ref|YP_003357933.1| - 1.4e-39 135.1 0.0 2.5e-39 134.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|282165548|ref|YP_003357933.1| - 6.7e-17 61.8 0.0 1.3e-16 60.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|282165548|ref|YP_003357933.1| - 4.1e-09 36.1 0.0 6.9e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.1 gi|282165548|ref|YP_003357933.1| - 1.3e-07 30.6 0.1 2.1e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|282165548|ref|YP_003357933.1| - 1.8e-05 24.1 0.1 3.7e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|282165548|ref|YP_003357933.1| - 7.3e-05 22.3 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain 2-Hacid_dh_C PF02826.14 gi|282165548|ref|YP_003357933.1| - 0.0034 16.5 0.0 0.0069 15.5 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|282165548|ref|YP_003357933.1| - 0.0066 16.5 0.1 0.014 15.5 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain ATPgrasp_ST PF14397.1 gi|282165548|ref|YP_003357933.1| - 0.02 14.0 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp ATP-grasp_5 PF13549.1 gi|282165548|ref|YP_003357933.1| - 0.089 11.9 0.0 0.2 10.8 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain Fer4 PF00037.22 gi|282165549|ref|YP_003357934.1| - 3.7e-09 35.7 15.1 2.4e-05 23.7 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|282165549|ref|YP_003357934.1| - 4.2e-07 29.5 13.4 0.00037 20.2 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|282165549|ref|YP_003357934.1| - 1.6e-06 27.9 11.7 0.00099 18.9 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|282165549|ref|YP_003357934.1| - 1e-05 25.4 12.4 0.0085 16.0 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|282165549|ref|YP_003357934.1| - 2.7e-05 23.8 28.0 0.00018 21.2 11.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|282165549|ref|YP_003357934.1| - 5.6e-05 23.4 16.4 0.003 17.9 11.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|282165549|ref|YP_003357934.1| - 8e-05 22.8 17.0 0.0003 20.9 11.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|282165549|ref|YP_003357934.1| - 0.00023 21.2 16.3 0.024 14.9 2.2 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|282165549|ref|YP_003357934.1| - 0.00069 20.3 15.3 0.089 13.5 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|282165549|ref|YP_003357934.1| - 0.001 19.4 17.8 0.0093 16.3 4.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|282165549|ref|YP_003357934.1| - 0.001 19.3 15.8 0.038 14.3 1.7 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|282165549|ref|YP_003357934.1| - 0.01 15.6 20.2 0.027 14.4 2.7 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|282165549|ref|YP_003357934.1| - 0.19 12.1 15.3 1.2 9.6 1.6 2.6 1 1 2 3 3 3 0 4Fe-4S single cluster domain c-SKI_SMAD_bind PF08782.5 gi|282165549|ref|YP_003357934.1| - 7.2 6.8 10.2 4.8 7.3 1.3 2.0 1 1 0 2 2 2 0 c-SKI Smad4 binding domain NAD_binding_8 PF13450.1 gi|282165550|ref|YP_003357935.1| - 3.1e-09 36.7 0.7 1.2e-08 34.8 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|282165550|ref|YP_003357935.1| - 5.7e-08 32.2 0.0 6.6e-06 25.4 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|282165550|ref|YP_003357935.1| - 4.6e-06 25.7 1.3 1.1e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|282165550|ref|YP_003357935.1| - 0.00043 18.8 0.1 0.069 11.5 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein GDI PF00996.13 gi|282165550|ref|YP_003357935.1| - 0.0018 16.7 0.2 0.0039 15.5 0.0 1.6 2 0 0 2 2 2 1 GDP dissociation inhibitor Pyr_redox PF00070.22 gi|282165550|ref|YP_003357935.1| - 0.02 15.2 1.1 9.2 6.7 0.0 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|282165550|ref|YP_003357935.1| - 0.024 13.5 3.0 2.3 6.9 0.0 2.5 3 0 0 3 3 3 0 FAD binding domain ESSS PF10183.4 gi|282165552|ref|YP_003357937.1| - 1.5 9.2 4.0 0.63 10.4 0.2 2.3 2 0 0 2 2 2 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) Fasciclin PF02469.17 gi|282165553|ref|YP_003357938.1| - 8.3e-36 122.8 0.1 1.1e-35 122.4 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain UPF0444 PF15475.1 gi|282165553|ref|YP_003357938.1| - 0.0051 16.8 0.9 0.0086 16.1 0.7 1.5 1 0 0 1 1 1 1 Transmembrane protein C12orf23, UPF0444 DUF4098 PF13345.1 gi|282165553|ref|YP_003357938.1| - 0.74 9.8 5.2 0.34 10.8 1.7 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4098) Fasciclin PF02469.17 gi|282165554|ref|YP_003357939.1| - 2.2e-40 137.6 0.0 2.7e-40 137.3 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain SOUL PF04832.7 gi|282165555|ref|YP_003357940.1| - 4e-59 199.0 2.5 1.4e-57 194.0 1.7 2.0 1 1 0 1 1 1 1 SOUL heme-binding protein Cass2 PF14526.1 gi|282165555|ref|YP_003357940.1| - 0.021 14.8 0.0 0.048 13.6 0.0 1.5 1 1 0 1 1 1 0 Integron-associated effector binding protein GyrI-like PF06445.10 gi|282165555|ref|YP_003357940.1| - 0.092 12.7 0.1 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 GyrI-like small molecule binding domain zinc_ribbon_2 PF13240.1 gi|282165556|ref|YP_003357941.1| - 0.00032 20.0 1.8 0.00063 19.1 1.3 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|282165556|ref|YP_003357941.1| - 0.014 15.2 5.3 0.023 14.4 3.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|282165556|ref|YP_003357941.1| - 0.045 13.4 3.3 0.052 13.2 2.3 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RING_4 PF14570.1 gi|282165556|ref|YP_003357941.1| - 0.12 11.9 6.0 0.49 10.0 3.7 2.1 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain zf-ribbon_3 PF13248.1 gi|282165556|ref|YP_003357941.1| - 0.22 10.8 4.6 0.5 9.6 3.2 1.7 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|282165556|ref|YP_003357941.1| - 0.27 10.9 3.2 0.53 9.9 2.2 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C3HC4_3 PF13920.1 gi|282165556|ref|YP_003357941.1| - 0.42 10.3 6.4 1 9.0 4.4 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Rad50_zn_hook PF04423.9 gi|282165556|ref|YP_003357941.1| - 1.4 8.4 3.8 4.5 6.8 0.1 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif DUF523 PF04463.7 gi|282165557|ref|YP_003357942.1| - 6.3e-32 110.3 0.0 8.8e-32 109.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|282165557|ref|YP_003357942.1| - 0.00011 22.1 0.0 0.00015 21.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) Flavodoxin_4 PF12682.2 gi|282165558|ref|YP_003357943.1| - 1.2e-10 40.9 0.0 2.8e-10 39.7 0.0 1.6 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|282165558|ref|YP_003357943.1| - 1.3e-07 31.2 0.0 1.5e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|282165558|ref|YP_003357943.1| - 1.3e-05 25.2 0.0 5.9e-05 23.0 0.0 1.9 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|282165558|ref|YP_003357943.1| - 2.1e-05 23.9 0.0 0.0033 16.8 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_2 PF02525.12 gi|282165558|ref|YP_003357943.1| - 0.018 14.5 0.2 0.034 13.6 0.1 1.6 1 1 0 1 1 1 0 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|282165558|ref|YP_003357943.1| - 0.019 14.9 0.0 2.9 7.8 0.0 2.2 1 1 1 2 2 2 0 Flavodoxin domain Pyridox_ox_2 PF12900.2 gi|282165559|ref|YP_003357944.1| - 1.3e-18 67.2 0.0 1.8e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|282165559|ref|YP_003357944.1| - 8.2e-07 28.9 0.0 1.3e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Fasciclin PF02469.17 gi|282165560|ref|YP_003357945.1| - 2e-36 124.7 0.0 2.8e-36 124.3 0.0 1.2 1 0 0 1 1 1 1 Fasciclin domain DUF4366 PF14283.1 gi|282165560|ref|YP_003357945.1| - 0.094 12.1 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Flavodoxin_3 PF12641.2 gi|282165563|ref|YP_003357948.1| - 2.5e-15 56.2 0.1 5.8e-15 55.0 0.0 1.5 1 1 1 2 2 2 1 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|282165563|ref|YP_003357948.1| - 6.4e-12 45.6 0.0 7e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|282165563|ref|YP_003357948.1| - 2.3e-08 33.5 0.1 0.0022 17.3 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_1 PF00258.20 gi|282165563|ref|YP_003357948.1| - 4.3e-08 33.2 1.1 7.6e-08 32.4 0.7 1.5 1 1 0 1 1 1 1 Flavodoxin DUF3186 PF11382.3 gi|282165563|ref|YP_003357948.1| - 0.0035 16.5 0.1 0.044 12.9 0.0 1.9 1 1 1 2 2 2 2 Protein of unknown function (DUF3186) Peripla_BP_6 PF13458.1 gi|282165563|ref|YP_003357948.1| - 0.026 13.8 0.2 0.034 13.4 0.1 1.3 1 0 0 1 1 1 0 Periplasmic binding protein SPOR PF05036.8 gi|282165563|ref|YP_003357948.1| - 0.12 12.5 0.1 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Sporulation related domain MarR_2 PF12802.2 gi|282165564|ref|YP_003357949.1| - 0.00011 21.7 0.0 0.00027 20.5 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|282165564|ref|YP_003357949.1| - 0.0016 18.2 0.1 0.0029 17.3 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|282165564|ref|YP_003357949.1| - 0.0024 18.1 0.2 0.0048 17.2 0.1 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|282165564|ref|YP_003357949.1| - 0.0035 17.0 0.2 0.0091 15.6 0.1 1.7 2 0 0 2 2 2 1 MarR family SgrR_N PF12793.2 gi|282165564|ref|YP_003357949.1| - 0.01 15.8 0.1 0.02 14.9 0.0 1.7 1 1 0 1 1 1 0 Sugar transport-related sRNA regulator N-term FAD_binding_5 PF00941.16 gi|282165564|ref|YP_003357949.1| - 0.066 12.6 0.0 0.083 12.3 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain in molybdopterin dehydrogenase DUF2247 PF10004.4 gi|282165564|ref|YP_003357949.1| - 0.097 12.3 0.0 0.2 11.3 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2247) Glycos_trans_3N PF02885.12 gi|282165564|ref|YP_003357949.1| - 0.17 11.4 0.8 11 5.7 0.1 2.8 2 1 1 3 3 3 0 Glycosyl transferase family, helical bundle domain Flavodoxin_5 PF12724.2 gi|282165565|ref|YP_003357950.1| - 2.4e-05 24.3 0.0 3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|282165565|ref|YP_003357950.1| - 0.0023 17.3 0.0 0.0029 17.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain CDP-OH_P_transf PF01066.16 gi|282165566|ref|YP_003357951.1| - 1.3e-17 63.9 7.9 3e-17 62.7 5.5 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Pkr1 PF08636.5 gi|282165566|ref|YP_003357951.1| - 0.059 13.4 0.7 0.17 11.9 0.5 1.7 1 0 0 1 1 1 0 ER protein Pkr1 Pyridox_oxidase PF01243.15 gi|282165567|ref|YP_003357952.1| - 1.8e-09 37.4 0.0 2.5e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|282165567|ref|YP_003357952.1| - 0.04 13.7 0.0 0.047 13.5 0.0 1.3 1 1 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase HrcA_DNA-bdg PF03444.10 gi|282165568|ref|YP_003357953.1| - 2.9e-36 122.7 0.1 6.3e-36 121.6 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|282165568|ref|YP_003357953.1| - 1.1e-25 89.1 1.8 3.4e-12 45.9 0.1 2.4 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|282165568|ref|YP_003357953.1| - 1.1e-08 35.0 0.1 2.3e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|282165568|ref|YP_003357953.1| - 4.4e-08 32.6 0.0 7.9e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|282165568|ref|YP_003357953.1| - 0.00022 20.8 0.0 0.00075 19.1 0.0 2.0 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|282165568|ref|YP_003357953.1| - 0.00025 20.5 0.0 0.00047 19.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|282165568|ref|YP_003357953.1| - 0.00052 19.3 0.3 0.0015 17.8 0.2 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|282165568|ref|YP_003357953.1| - 0.0014 18.2 0.0 0.0034 17.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|282165568|ref|YP_003357953.1| - 0.0019 17.9 0.0 0.0049 16.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|282165568|ref|YP_003357953.1| - 0.013 15.1 0.0 0.031 13.9 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|282165568|ref|YP_003357953.1| - 0.041 13.4 0.5 0.12 11.9 0.1 2.0 2 0 0 2 2 2 0 LexA DNA binding domain HTH_27 PF13463.1 gi|282165568|ref|YP_003357953.1| - 0.043 14.1 0.0 0.12 12.7 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain DeoC PF01791.4 gi|282165569|ref|YP_003357954.1| - 2e-33 115.6 0.0 2.3e-33 115.4 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|282165569|ref|YP_003357954.1| - 0.051 12.8 0.0 0.072 12.3 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF457 PF04307.9 gi|282165571|ref|YP_003357956.1| - 3.8e-17 62.0 8.3 4.6e-17 61.7 5.7 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|282165571|ref|YP_003357956.1| - 0.016 14.8 0.3 0.02 14.5 0.2 1.2 1 0 0 1 1 1 0 Zinc dependent phospholipase C Intg_mem_TP0381 PF09529.5 gi|282165571|ref|YP_003357956.1| - 0.39 9.9 5.9 0.67 9.1 4.0 1.4 1 1 0 1 1 1 0 Integral membrane protein (intg_mem_TP0381) Sdh_cyt PF01127.17 gi|282165571|ref|YP_003357956.1| - 0.89 9.4 5.7 0.51 10.1 2.6 1.6 1 1 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4418 PF14387.1 gi|282165571|ref|YP_003357956.1| - 1.4 8.6 4.3 5.5 6.7 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4418) TIM PF00121.13 gi|282165572|ref|YP_003357957.1| - 2e-26 92.5 0.0 6.5e-24 84.3 0.0 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase NMO PF03060.10 gi|282165572|ref|YP_003357957.1| - 4.9e-06 25.9 0.1 6.8e-06 25.4 0.1 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.9 gi|282165572|ref|YP_003357957.1| - 3e-05 23.2 0.3 4.4e-05 22.6 0.2 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.15 gi|282165572|ref|YP_003357957.1| - 0.0076 14.8 0.6 0.022 13.2 0.4 1.8 1 1 0 1 1 1 1 Tryptophan synthase alpha chain FMN_dh PF01070.13 gi|282165572|ref|YP_003357957.1| - 0.017 14.0 0.6 0.027 13.3 0.4 1.3 1 0 0 1 1 1 0 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|282165572|ref|YP_003357957.1| - 0.049 12.8 0.0 0.064 12.5 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein Hydrolase_like PF13242.1 gi|282165572|ref|YP_003357957.1| - 0.12 12.1 0.1 5.5 6.7 0.0 2.3 2 0 0 2 2 2 0 HAD-hyrolase-like IGPS PF00218.16 gi|282165572|ref|YP_003357957.1| - 0.12 11.4 0.0 0.17 10.8 0.0 1.4 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase FMN_red PF03358.10 gi|282165573|ref|YP_003357958.1| - 2.9e-42 143.7 0.0 3.7e-42 143.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|282165573|ref|YP_003357958.1| - 2.3e-12 46.8 0.0 3.6e-12 46.2 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Choline_kin_N PF04428.9 gi|282165573|ref|YP_003357958.1| - 0.061 12.7 0.1 0.49 9.8 0.0 2.2 1 1 0 1 1 1 0 Choline kinase N terminus Fae PF08714.6 gi|282165574|ref|YP_003357959.1| - 2.8e-70 235.1 1.2 7.8e-70 233.6 0.9 1.8 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|282165574|ref|YP_003357959.1| - 2.9e-22 79.1 4.1 5.6e-22 78.2 2.8 1.5 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|282165574|ref|YP_003357959.1| - 1.7e-07 30.5 0.7 2.9e-07 29.7 0.5 1.4 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|282165574|ref|YP_003357959.1| - 5.7e-05 22.6 0.3 0.00012 21.6 0.2 1.6 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain PcrB PF01884.12 gi|282165574|ref|YP_003357959.1| - 0.0028 16.9 4.4 0.01 15.1 1.3 2.2 2 0 0 2 2 2 1 PcrB family TMP-TENI PF02581.12 gi|282165574|ref|YP_003357959.1| - 0.045 12.8 1.7 0.08 12.0 1.2 1.5 1 1 0 1 1 1 0 Thiamine monophosphate synthase/TENI TAFII28 PF04719.9 gi|282165574|ref|YP_003357959.1| - 0.13 12.0 0.4 0.32 10.8 0.3 1.6 1 0 0 1 1 1 0 hTAFII28-like protein conserved region HTH_24 PF13412.1 gi|282165575|ref|YP_003357960.1| - 1.3e-16 59.6 0.0 6.1e-09 35.1 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|282165575|ref|YP_003357960.1| - 1.9e-06 27.3 0.0 0.0047 16.4 0.0 2.3 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|282165575|ref|YP_003357960.1| - 4.5e-06 26.2 0.0 0.043 13.4 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.2 gi|282165575|ref|YP_003357960.1| - 4.8e-06 26.2 0.0 0.035 13.8 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|282165575|ref|YP_003357960.1| - 0.00077 19.1 0.0 0.46 10.2 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|282165575|ref|YP_003357960.1| - 0.0019 17.8 0.0 0.0088 15.7 0.0 2.0 2 0 0 2 2 2 1 MarR family FaeA PF04703.7 gi|282165575|ref|YP_003357960.1| - 0.0034 17.5 0.1 0.0073 16.4 0.0 1.5 1 0 0 1 1 1 1 FaeA-like protein EAP30 PF04157.11 gi|282165575|ref|YP_003357960.1| - 0.0036 16.4 0.0 1.9 7.5 0.0 2.1 1 1 1 2 2 2 2 EAP30/Vps36 family HTH_5 PF01022.15 gi|282165575|ref|YP_003357960.1| - 0.011 15.4 0.0 0.15 11.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family TBPIP PF07106.8 gi|282165575|ref|YP_003357960.1| - 0.015 14.8 0.2 0.74 9.3 0.0 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_AsnC-type PF13404.1 gi|282165575|ref|YP_003357960.1| - 0.035 13.6 0.0 0.4 10.2 0.0 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|282165575|ref|YP_003357960.1| - 0.036 13.8 0.1 0.13 12.0 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|282165575|ref|YP_003357960.1| - 0.061 12.9 0.0 0.54 9.9 0.0 2.1 2 0 0 2 2 2 0 HTH domain Mnd1 PF03962.10 gi|282165575|ref|YP_003357960.1| - 0.14 11.7 0.1 0.88 9.1 0.1 1.9 2 0 0 2 2 2 0 Mnd1 family DUF258 PF03193.11 gi|282165575|ref|YP_003357960.1| - 0.17 11.0 0.0 0.87 8.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 P12 PF12669.2 gi|282165575|ref|YP_003357960.1| - 0.75 10.0 0.1 0.75 10.0 0.1 2.3 2 0 0 2 2 2 0 Virus attachment protein p12 family DUF1469 PF07332.6 gi|282165575|ref|YP_003357960.1| - 3.1 7.5 7.1 9 6.0 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Elf1 PF05129.8 gi|282165576|ref|YP_003357961.1| - 0.02 14.5 0.3 0.031 13.9 0.2 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DM PF00751.13 gi|282165576|ref|YP_003357961.1| - 0.025 14.0 1.7 0.045 13.2 0.8 1.7 2 0 0 2 2 2 0 DM DNA binding domain DUF2296 PF10058.4 gi|282165576|ref|YP_003357961.1| - 0.18 11.5 1.2 0.43 10.3 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Trp_syntA PF00290.15 gi|282165577|ref|YP_003357962.1| - 9.5e-82 273.4 0.0 1.1e-81 273.1 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|282165577|ref|YP_003357962.1| - 0.00081 18.7 0.3 0.0032 16.7 0.2 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|282165577|ref|YP_003357962.1| - 0.0017 17.4 3.3 0.005 15.9 2.5 1.6 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG PALP PF00291.20 gi|282165578|ref|YP_003357963.1| - 1.1e-41 143.0 0.9 1.3e-41 142.7 0.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.10 gi|282165578|ref|YP_003357963.1| - 0.083 12.5 0.2 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein PRAI PF00697.17 gi|282165579|ref|YP_003357964.1| - 2.3e-37 128.4 0.0 2.6e-37 128.3 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.12 gi|282165579|ref|YP_003357964.1| - 0.015 14.4 0.4 0.024 13.7 0.3 1.5 1 1 0 1 1 1 0 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|282165579|ref|YP_003357964.1| - 0.017 14.2 2.7 1.1 8.3 0.1 2.5 2 2 0 2 2 2 0 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|282165579|ref|YP_003357964.1| - 0.022 14.0 0.1 0.083 12.1 0.0 2.0 2 1 0 2 2 2 0 Histidine biosynthesis protein QRPTase_C PF01729.14 gi|282165579|ref|YP_003357964.1| - 0.025 14.0 0.0 0.061 12.8 0.0 1.7 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Glycos_transf_3 PF00591.16 gi|282165580|ref|YP_003357965.1| - 3.7e-98 327.9 0.9 4.5e-98 327.6 0.3 1.3 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|282165580|ref|YP_003357965.1| - 1.3e-21 75.8 0.2 4.4e-21 74.2 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain GATase PF00117.23 gi|282165581|ref|YP_003357966.1| - 9.3e-54 181.8 0.0 1.1e-53 181.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|282165581|ref|YP_003357966.1| - 7.5e-11 41.8 0.0 1.7e-10 40.7 0.0 1.6 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|282165582|ref|YP_003357967.1| - 9.6e-95 316.7 0.0 1.4e-94 316.1 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|282165582|ref|YP_003357967.1| - 1.7e-27 96.1 0.0 6.4e-26 91.0 0.0 2.3 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region IGPS PF00218.16 gi|282165583|ref|YP_003357968.1| - 3.1e-59 200.1 0.0 3.6e-59 199.8 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase MMPL PF03176.10 gi|282165584|ref|YP_003357969.1| - 8.2e-98 327.1 19.4 8.6e-50 169.3 6.5 3.0 3 0 0 3 3 3 2 MMPL family ACR_tran PF00873.14 gi|282165584|ref|YP_003357969.1| - 2.4e-10 38.5 29.7 2.4e-09 35.2 6.9 2.5 2 1 0 2 2 2 2 AcrB/AcrD/AcrF family Sterol-sensing PF12349.3 gi|282165584|ref|YP_003357969.1| - 3e-07 30.0 27.6 0.0012 18.3 5.0 3.5 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|282165584|ref|YP_003357969.1| - 1.5e-05 23.1 26.9 0.00039 18.4 3.5 2.6 3 0 0 3 3 3 2 Patched family TetR_N PF00440.18 gi|282165585|ref|YP_003357970.1| - 3.6e-18 64.9 0.0 5.6e-18 64.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family CPL PF08144.6 gi|282165585|ref|YP_003357970.1| - 0.072 12.9 0.2 1.8 8.4 0.0 2.6 2 1 1 3 3 3 0 CPL (NUC119) domain CbiZ PF01955.13 gi|282165586|ref|YP_003357971.1| - 4.1e-51 173.5 0.7 5.5e-51 173.0 0.5 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase zf-like PF04071.7 gi|282165586|ref|YP_003357971.1| - 2.5e-29 100.8 9.7 4.8e-29 99.9 6.7 1.5 1 0 0 1 1 1 1 Cysteine-rich small domain Peripla_BP_2 PF01497.13 gi|282165587|ref|YP_003357972.1| - 4.8e-42 143.7 0.3 5.7e-42 143.4 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ATP-grasp_5 PF13549.1 gi|282165588|ref|YP_003357973.1| - 1.5e-78 263.0 0.0 2.2e-78 262.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|282165588|ref|YP_003357973.1| - 1.4e-54 183.4 0.4 6.7e-54 181.2 0.2 2.2 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|282165588|ref|YP_003357973.1| - 1.5e-25 89.6 0.1 8.9e-25 87.1 0.1 2.5 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|282165588|ref|YP_003357973.1| - 3.6e-16 59.4 0.1 1.3e-15 57.6 0.0 2.0 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_4 PF13535.1 gi|282165588|ref|YP_003357973.1| - 0.0078 15.9 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|282165588|ref|YP_003357973.1| - 0.023 14.0 0.1 0.055 12.8 0.0 1.7 1 0 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|282165588|ref|YP_003357973.1| - 0.084 12.1 0.2 0.22 10.8 0.0 1.8 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain MS_channel PF00924.13 gi|282165589|ref|YP_003357974.1| - 1.1e-14 54.2 2.5 3.1e-14 52.8 1.7 1.7 1 1 0 1 1 1 1 Mechanosensitive ion channel DHFR_2 PF06442.6 gi|282165589|ref|YP_003357974.1| - 0.034 13.7 0.1 0.2 11.2 0.0 2.0 2 0 0 2 2 2 0 R67 dihydrofolate reductase ExoD PF06055.7 gi|282165589|ref|YP_003357974.1| - 0.28 10.2 3.4 0.45 9.5 2.4 1.2 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD VIT1 PF01988.14 gi|282165589|ref|YP_003357974.1| - 1.1 8.6 6.3 2.6 7.4 4.4 1.5 1 0 0 1 1 1 0 VIT family Ham1p_like PF01725.11 gi|282165590|ref|YP_003357975.1| - 1.9e-47 161.0 0.0 2.2e-47 160.9 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Lactamase_B PF00753.22 gi|282165591|ref|YP_003357976.1| - 9.4e-25 87.3 0.0 1.7e-24 86.5 0.0 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|282165591|ref|YP_003357976.1| - 1.1e-09 38.3 0.0 1.9e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|282165591|ref|YP_003357976.1| - 0.00015 21.3 0.0 0.00026 20.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_5 PF12724.2 gi|282165591|ref|YP_003357976.1| - 0.12 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain HEAT_2 PF13646.1 gi|282165592|ref|YP_003357977.1| - 5.5e-64 212.4 25.5 1.6e-15 57.1 1.5 3.4 1 1 4 5 5 5 5 HEAT repeats HEAT_PBS PF03130.11 gi|282165592|ref|YP_003357977.1| - 9.2e-22 75.2 12.4 0.0013 18.9 0.1 6.5 6 0 0 6 6 6 5 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|282165592|ref|YP_003357977.1| - 5.6e-20 69.5 3.1 0.056 13.5 0.0 7.3 7 0 0 7 7 7 6 HEAT repeat HEAT_EZ PF13513.1 gi|282165592|ref|YP_003357977.1| - 1.8e-14 53.6 15.2 0.0075 16.7 0.2 5.5 5 1 0 5 5 5 4 HEAT-like repeat Arm PF00514.18 gi|282165592|ref|YP_003357977.1| - 8e-06 25.4 0.5 1.1 9.1 0.0 5.2 5 1 2 7 7 7 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|282165592|ref|YP_003357977.1| - 3e-05 22.5 0.1 0.065 11.5 0.0 3.3 1 1 3 4 4 4 4 Adaptin N terminal region DUF2435 PF10363.4 gi|282165592|ref|YP_003357977.1| - 0.00061 19.6 0.0 0.33 10.8 0.0 3.9 2 1 2 4 4 4 1 Protein of unknown function (DUF2435) HEM4 PF02602.10 gi|282165593|ref|YP_003357978.1| - 3.5e-48 163.8 0.0 4e-48 163.6 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD MGS PF02142.17 gi|282165593|ref|YP_003357978.1| - 0.016 15.1 0.0 2.9 7.8 0.0 2.6 3 0 0 3 3 3 0 MGS-like domain CoA_binding_2 PF13380.1 gi|282165593|ref|YP_003357978.1| - 0.058 13.5 0.1 6.5 6.9 0.0 3.1 2 1 0 2 2 2 0 CoA binding domain TP_methylase PF00590.15 gi|282165594|ref|YP_003357979.1| - 1.7e-55 187.9 0.9 2e-55 187.7 0.6 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Porphobil_deam PF01379.15 gi|282165595|ref|YP_003357980.1| - 2.5e-67 225.9 0.0 3e-67 225.6 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|282165595|ref|YP_003357980.1| - 4.9e-11 42.5 0.1 8.9e-11 41.7 0.1 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.15 gi|282165595|ref|YP_003357980.1| - 0.017 14.4 0.0 0.093 11.9 0.0 2.0 2 1 1 3 3 3 0 Bacterial extracellular solute-binding proteins, family 3 Aminotran_3 PF00202.16 gi|282165596|ref|YP_003357981.1| - 1.2e-64 218.3 0.0 1.6e-64 217.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|282165596|ref|YP_003357981.1| - 9e-08 31.4 0.0 1.3e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|282165596|ref|YP_003357981.1| - 0.13 11.3 0.0 0.27 10.3 0.0 1.5 2 0 0 2 2 2 0 Beta-eliminating lyase ALAD PF00490.16 gi|282165597|ref|YP_003357982.1| - 1.3e-142 474.4 0.1 1.5e-142 474.2 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Shikimate_DH PF01488.15 gi|282165598|ref|YP_003357983.1| - 3.3e-35 121.1 0.2 5.3e-35 120.4 0.2 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.10 gi|282165598|ref|YP_003357983.1| - 1.2e-33 115.8 0.0 3.3e-33 114.4 0.0 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.15 gi|282165598|ref|YP_003357983.1| - 2.1e-17 62.8 0.0 4.7e-17 61.7 0.0 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|282165598|ref|YP_003357983.1| - 6.5e-08 32.9 0.3 1.9e-07 31.3 0.2 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|282165598|ref|YP_003357983.1| - 0.00011 22.4 0.2 0.0002 21.5 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|282165598|ref|YP_003357983.1| - 0.0007 18.7 0.1 0.0013 17.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|282165598|ref|YP_003357983.1| - 0.00098 18.9 0.1 0.0018 18.0 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|282165598|ref|YP_003357983.1| - 0.001 18.1 0.1 0.0015 17.6 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase DapB_N PF01113.15 gi|282165598|ref|YP_003357983.1| - 0.0011 18.8 0.2 0.0091 15.9 0.1 2.3 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus TrkA_N PF02254.13 gi|282165598|ref|YP_003357983.1| - 0.0061 16.5 1.1 0.086 12.8 0.7 2.8 2 1 1 3 3 3 1 TrkA-N domain ApbA PF02558.11 gi|282165598|ref|YP_003357983.1| - 0.02 14.3 0.1 0.041 13.3 0.1 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|282165598|ref|YP_003357983.1| - 0.1 12.2 0.6 0.3 10.7 0.1 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|282165599|ref|YP_003357984.1| - 1.7e-21 76.4 0.0 6.8e-21 74.4 0.0 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.1 gi|282165599|ref|YP_003357984.1| - 0.0094 14.9 0.1 0.034 13.1 0.0 1.9 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central CysG_dimeriser PF10414.4 gi|282165599|ref|YP_003357984.1| - 0.012 15.1 1.8 0.012 15.1 1.3 1.6 2 0 0 2 2 2 0 Sirohaem synthase dimerisation region SIS_2 PF13580.1 gi|282165599|ref|YP_003357984.1| - 0.05 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 SIS domain DUF4013 PF13197.1 gi|282165600|ref|YP_003357985.1| - 1.5e-26 92.7 30.9 2.1e-26 92.2 21.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) NADH_u_ox_C PF12853.2 gi|282165600|ref|YP_003357985.1| - 0.024 14.3 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit Peptidase_M20 PF01546.23 gi|282165601|ref|YP_003357986.1| - 3.3e-35 121.2 0.1 4.2e-35 120.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|282165601|ref|YP_003357986.1| - 1.1e-19 70.1 0.0 2.5e-19 69.0 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.9 gi|282165601|ref|YP_003357986.1| - 0.011 14.4 0.0 0.16 10.7 0.0 2.4 3 0 0 3 3 3 0 M42 glutamyl aminopeptidase MoCF_biosynth PF00994.19 gi|282165602|ref|YP_003357987.1| - 1.6e-27 95.6 0.0 1.9e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain PolC_DP2 PF03833.8 gi|282165603|ref|YP_003357988.1| - 0 1188.4 0.0 0 1186.8 0.0 1.7 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 DUF3280 PF11684.3 gi|282165603|ref|YP_003357988.1| - 0.15 12.2 0.0 0.41 10.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2380) NiFe_hyd_SSU_C PF14720.1 gi|282165604|ref|YP_003357989.1| - 1.7e-28 98.4 2.0 1.7e-28 98.4 1.4 2.1 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.17 gi|282165604|ref|YP_003357989.1| - 3.3e-24 84.9 0.4 9.7e-24 83.4 0.0 1.8 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.4 gi|282165604|ref|YP_003357989.1| - 0.035 14.1 5.2 0.035 14.1 3.6 3.8 3 1 1 4 4 4 0 TAT (twin-arginine translocation) pathway signal sequence NiFeSe_Hases PF00374.14 gi|282165605|ref|YP_003357990.1| - 3.5e-79 266.9 0.0 4.5e-53 180.7 0.0 3.0 2 1 0 3 3 3 3 Nickel-dependent hydrogenase Ni_hydr_CYTB PF01292.15 gi|282165606|ref|YP_003357991.1| - 3.3e-09 36.3 16.2 4.9e-09 35.8 11.2 1.2 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 Cytochrom_B_N PF00033.14 gi|282165606|ref|YP_003357991.1| - 1.1e-08 34.6 18.9 5e-08 32.5 13.1 1.8 1 1 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB DUF4405 PF14358.1 gi|282165606|ref|YP_003357991.1| - 0.0043 17.1 15.8 0.25 11.5 7.3 3.1 2 1 0 2 2 2 2 Domain of unknown function (DUF4405) NTP_transf_3 PF12804.2 gi|282165607|ref|YP_003357992.1| - 1.5e-34 119.4 0.1 1.9e-34 119.0 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF92 PF01940.11 gi|282165608|ref|YP_003357993.1| - 3.5e-69 232.4 15.4 3.5e-69 232.4 10.7 2.5 2 1 2 4 4 4 1 Integral membrane protein DUF92 OppC_N PF12911.2 gi|282165608|ref|YP_003357993.1| - 2.3 7.6 0.0 2.3 7.6 0.0 4.6 5 1 0 5 5 5 0 N-terminal TM domain of oligopeptide transport permease C Prenyltransf PF01255.14 gi|282165609|ref|YP_003357994.1| - 1.3e-33 115.9 0.0 1.7e-30 105.8 0.0 2.1 2 0 0 2 2 2 2 Putative undecaprenyl diphosphate synthase UPF0104 PF03706.8 gi|282165610|ref|YP_003357995.1| - 1e-39 136.5 34.5 1.3e-39 136.2 23.9 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) YqjK PF13997.1 gi|282165610|ref|YP_003357995.1| - 0.057 13.5 0.2 0.22 11.7 0.1 2.0 1 0 0 1 1 1 0 YqjK-like protein DNase-RNase PF02577.9 gi|282165611|ref|YP_003357996.1| - 1.4e-43 147.4 1.6 1.6e-43 147.1 1.1 1.0 1 0 0 1 1 1 1 Bifunctional nuclease S-AdoMet_synt_C PF02773.11 gi|282165611|ref|YP_003357996.1| - 0.071 12.8 0.1 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 S-adenosylmethionine synthetase, C-terminal domain GTP_EFTU PF00009.22 gi|282165613|ref|YP_003357998.1| - 3.5e-10 39.6 0.0 1.5e-09 37.5 0.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|282165613|ref|YP_003357998.1| - 2.7e-08 34.3 0.0 3.4e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Miro-like protein Ras PF00071.17 gi|282165613|ref|YP_003357998.1| - 3.2e-06 26.6 0.0 3.9e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Ras family Arf PF00025.16 gi|282165613|ref|YP_003357998.1| - 2.8e-05 23.4 0.0 4.3e-05 22.8 0.0 1.4 1 1 0 1 1 1 1 ADP-ribosylation factor family ATP_bind_1 PF03029.12 gi|282165613|ref|YP_003357998.1| - 0.00024 20.7 0.0 0.0012 18.3 0.0 2.1 1 1 2 3 3 3 1 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.18 gi|282165613|ref|YP_003357998.1| - 0.00067 19.5 0.0 0.00098 19.0 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|282165613|ref|YP_003357998.1| - 0.001 18.2 0.0 0.0016 17.6 0.0 1.3 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Peptidase_M50 PF02163.17 gi|282165614|ref|YP_003357999.1| - 8e-23 80.4 5.1 8e-23 80.4 3.6 1.7 2 1 0 2 2 2 1 Peptidase family M50 DUF165 PF02592.10 gi|282165614|ref|YP_003357999.1| - 1.7 8.7 11.6 1 9.5 0.3 3.1 2 1 1 3 3 3 0 Uncharacterized ACR, YhhQ family COG1738 TatC PF00902.13 gi|282165615|ref|YP_003358000.1| - 4.1e-50 170.1 18.7 4.8e-50 169.9 13.0 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Phage_holin_3 PF05106.7 gi|282165615|ref|YP_003358000.1| - 0.092 12.7 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Phage holin family (Lysis protein S) DUF3040 PF11239.3 gi|282165616|ref|YP_003358001.1| - 0.036 14.1 1.2 0.056 13.4 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF2741 PF10890.3 gi|282165621|ref|YP_003358006.1| - 0.036 14.1 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2741) MazG PF03819.12 gi|282165621|ref|YP_003358006.1| - 0.052 13.4 0.2 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain CarboxypepD_reg PF13620.1 gi|282165623|ref|YP_003358008.1| - 1.2e-13 50.8 10.6 4.1e-06 26.7 0.5 3.5 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282165623|ref|YP_003358008.1| - 6.5e-08 32.5 2.6 0.016 15.2 0.1 3.3 3 0 0 3 3 3 2 Domain of unknown function (DUF4480) Dioxygenase_C PF00775.16 gi|282165623|ref|YP_003358008.1| - 2.1e-07 30.3 0.1 0.017 14.3 0.0 2.6 2 1 0 2 2 2 2 Dioxygenase Cna_B PF05738.8 gi|282165623|ref|YP_003358008.1| - 7.7e-06 25.5 0.9 0.066 12.9 0.1 2.5 2 0 0 2 2 2 2 Cna protein B-type domain MG1 PF11974.3 gi|282165623|ref|YP_003358008.1| - 1e-05 25.9 0.2 0.081 13.4 0.0 2.6 2 0 0 2 2 2 2 Alpha-2-macroglobulin MG1 domain Big_1 PF02369.11 gi|282165623|ref|YP_003358008.1| - 1.1e-05 25.2 1.4 0.019 14.8 0.1 2.6 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) DUF1416 PF07210.7 gi|282165623|ref|YP_003358008.1| - 0.022 14.3 0.1 5.2 6.7 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1416) fn3_3 PF14686.1 gi|282165623|ref|YP_003358008.1| - 0.022 14.8 5.3 0.67 10.1 0.7 3.2 3 0 0 3 3 3 0 Polysaccharide lyase family 4, domain II DUF2834 PF11196.3 gi|282165623|ref|YP_003358008.1| - 1 9.5 3.3 0.39 10.9 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2834) Hemerythrin PF01814.18 gi|282165624|ref|YP_003358009.1| - 1e-19 71.0 4.4 1.8e-15 57.2 0.6 1.7 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain Aldolase_II PF00596.16 gi|282165625|ref|YP_003358010.1| - 7e-31 107.2 0.0 7.8e-31 107.1 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Methyltransf_11 PF08241.7 gi|282165626|ref|YP_003358011.1| - 8.8e-21 74.2 0.1 1.4e-20 73.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282165626|ref|YP_003358011.1| - 1.6e-18 66.9 0.0 2.2e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|282165626|ref|YP_003358011.1| - 6.9e-13 49.1 0.5 1.6e-12 47.9 0.4 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|282165626|ref|YP_003358011.1| - 1.1e-12 48.2 0.0 1.8e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|282165626|ref|YP_003358011.1| - 4.3e-12 46.2 0.1 1.1e-11 44.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282165626|ref|YP_003358011.1| - 1.1e-10 41.3 0.0 2.4e-10 40.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|282165626|ref|YP_003358011.1| - 2.9e-07 30.0 0.0 4.3e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|282165626|ref|YP_003358011.1| - 4.8e-07 29.8 0.9 1.2e-06 28.5 0.7 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282165626|ref|YP_003358011.1| - 3.3e-06 26.4 0.0 1e-05 24.8 0.0 1.7 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|282165626|ref|YP_003358011.1| - 3.9e-05 23.3 0.0 5.5e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|282165626|ref|YP_003358011.1| - 0.0004 19.5 0.0 0.00082 18.5 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.6 gi|282165626|ref|YP_003358011.1| - 0.00048 19.6 0.0 0.0012 18.3 0.0 1.7 1 1 1 2 2 2 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.9 gi|282165626|ref|YP_003358011.1| - 0.00095 18.3 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|282165626|ref|YP_003358011.1| - 0.0019 17.5 0.1 0.0041 16.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|282165626|ref|YP_003358011.1| - 0.0078 15.2 0.0 0.034 13.1 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.14 gi|282165626|ref|YP_003358011.1| - 0.01 15.4 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AdoMet_MTase PF07757.8 gi|282165626|ref|YP_003358011.1| - 0.017 15.2 0.0 0.028 14.5 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Methyltransf_9 PF08003.6 gi|282165626|ref|YP_003358011.1| - 0.023 13.4 0.0 0.031 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) PrmA PF06325.8 gi|282165626|ref|YP_003358011.1| - 0.028 13.5 0.0 0.049 12.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PI-PLC-X PF00388.14 gi|282165626|ref|YP_003358011.1| - 0.11 11.9 0.0 0.12 11.7 0.0 1.3 1 1 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain Robl_LC7 PF03259.12 gi|282165627|ref|YP_003358012.1| - 0.073 12.6 0.2 0.22 11.1 0.0 1.9 2 0 0 2 2 2 0 Roadblock/LC7 domain HAD_2 PF13419.1 gi|282165628|ref|YP_003358013.1| - 9.1e-27 94.4 0.1 1.2e-26 94.0 0.1 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|282165628|ref|YP_003358013.1| - 1.2e-10 40.9 0.0 2.1e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|282165628|ref|YP_003358013.1| - 1.2e-09 38.9 0.1 5.6e-09 36.7 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|282165628|ref|YP_003358013.1| - 3e-05 24.2 0.0 5.3e-05 23.4 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|282165628|ref|YP_003358013.1| - 0.0084 15.9 0.0 0.031 14.1 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HhH-GPD PF00730.20 gi|282165629|ref|YP_003358014.1| - 1.5e-15 57.4 0.0 2.2e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|282165629|ref|YP_003358014.1| - 0.00025 20.5 0.1 0.0012 18.4 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|282165629|ref|YP_003358014.1| - 0.012 15.7 0.6 0.025 14.7 0.4 1.6 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III DUF2400 PF09674.5 gi|282165629|ref|YP_003358014.1| - 0.013 15.1 0.0 0.043 13.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) DUF2117 PF09890.4 gi|282165630|ref|YP_003358015.1| - 1.1e-34 119.4 0.0 1.7e-34 118.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) DUF538 PF04398.7 gi|282165630|ref|YP_003358015.1| - 0.018 15.2 0.0 0.047 13.9 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF538 DUF4265 PF14085.1 gi|282165630|ref|YP_003358015.1| - 0.1 12.3 0.0 8.5 6.1 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4265) RNase_HII PF01351.13 gi|282165631|ref|YP_003358016.1| - 6.5e-46 156.4 0.1 7.4e-46 156.2 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII GTP_EFTU_D2 PF03144.20 gi|282165632|ref|YP_003358017.1| - 5.8e-10 39.1 0.2 3.2e-09 36.7 0.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|282165632|ref|YP_003358017.1| - 1.6e-05 24.4 0.3 3e-05 23.5 0.2 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.22 gi|282165632|ref|YP_003358017.1| - 0.00093 18.6 0.1 0.056 12.8 0.0 2.2 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain AAA_28 PF13521.1 gi|282165632|ref|YP_003358017.1| - 0.18 11.7 0.6 0.29 11.0 0.4 1.3 1 0 0 1 1 1 0 AAA domain Robl_LC7 PF03259.12 gi|282165633|ref|YP_003358018.1| - 2e-05 24.0 0.2 2e-05 24.0 0.2 1.7 2 1 0 2 2 2 1 Roadblock/LC7 domain tRNA-synt_2c PF01411.14 gi|282165634|ref|YP_003358019.1| - 7.1e-78 262.2 0.0 1.1e-77 261.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|282165634|ref|YP_003358019.1| - 4.1e-11 42.5 0.1 8e-11 41.6 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain CENP-F_leu_zip PF10473.4 gi|282165635|ref|YP_003358020.1| - 5.2e-06 26.3 9.0 0.00086 19.1 1.4 2.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.3 gi|282165635|ref|YP_003358020.1| - 0.00041 20.2 5.3 0.00041 20.2 3.7 1.5 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding PspA_IM30 PF04012.7 gi|282165635|ref|YP_003358020.1| - 0.00047 19.5 3.2 0.00059 19.2 2.2 1.1 1 0 0 1 1 1 1 PspA/IM30 family TMF_DNA_bd PF12329.3 gi|282165635|ref|YP_003358020.1| - 0.00076 19.2 7.5 0.00076 19.2 5.2 2.0 1 1 1 2 2 2 1 TATA element modulatory factor 1 DNA binding YycI PF09648.5 gi|282165635|ref|YP_003358020.1| - 0.0011 18.4 1.0 0.0013 18.2 0.7 1.2 1 0 0 1 1 1 1 YycH protein IncA PF04156.9 gi|282165635|ref|YP_003358020.1| - 0.0013 18.3 8.0 0.0017 18.0 5.5 1.1 1 0 0 1 1 1 1 IncA protein DUF869 PF05911.6 gi|282165635|ref|YP_003358020.1| - 0.0014 16.9 2.8 0.0019 16.5 1.9 1.3 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) HlyD PF00529.15 gi|282165635|ref|YP_003358020.1| - 0.005 16.2 3.1 0.0063 15.8 2.1 1.1 1 0 0 1 1 1 1 HlyD family secretion protein HALZ PF02183.13 gi|282165635|ref|YP_003358020.1| - 0.0053 16.4 2.4 0.0078 15.8 0.2 2.2 2 0 0 2 2 2 1 Homeobox associated leucine zipper Myosin_tail_1 PF01576.14 gi|282165635|ref|YP_003358020.1| - 0.0067 14.2 5.1 0.0092 13.7 3.5 1.2 1 0 0 1 1 1 1 Myosin tail DUF3450 PF11932.3 gi|282165635|ref|YP_003358020.1| - 0.0095 15.2 1.9 0.012 14.8 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) Noc2 PF03715.8 gi|282165635|ref|YP_003358020.1| - 0.011 14.6 0.2 0.014 14.2 0.2 1.0 1 0 0 1 1 1 0 Noc2p family DUF837 PF05769.6 gi|282165635|ref|YP_003358020.1| - 0.015 14.8 5.4 0.51 9.8 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF837) AAA_13 PF13166.1 gi|282165635|ref|YP_003358020.1| - 0.017 13.5 1.9 0.019 13.4 1.3 1.0 1 0 0 1 1 1 0 AAA domain MAD PF05557.8 gi|282165635|ref|YP_003358020.1| - 0.018 13.1 7.3 0.022 12.9 5.0 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein Cas6 PF09559.5 gi|282165635|ref|YP_003358020.1| - 0.019 14.7 0.6 0.022 14.4 0.5 1.1 1 0 0 1 1 1 0 Cas6 Crispr Spc7 PF08317.6 gi|282165635|ref|YP_003358020.1| - 0.023 13.3 4.7 0.03 13.0 3.3 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4099 PF13351.1 gi|282165635|ref|YP_003358020.1| - 0.035 14.0 0.0 0.059 13.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4099) Macoilin PF09726.4 gi|282165635|ref|YP_003358020.1| - 0.035 12.4 3.0 0.04 12.2 2.1 1.1 1 0 0 1 1 1 0 Transmembrane protein HOOK PF05622.7 gi|282165635|ref|YP_003358020.1| - 0.036 11.8 4.8 0.044 11.6 3.3 1.0 1 0 0 1 1 1 0 HOOK protein Leu_zip PF15294.1 gi|282165635|ref|YP_003358020.1| - 0.038 13.1 7.1 0.052 12.6 4.9 1.1 1 0 0 1 1 1 0 Leucine zipper DivIC PF04977.10 gi|282165635|ref|YP_003358020.1| - 0.038 13.4 10.2 0.057 12.9 1.6 2.8 1 1 2 3 3 3 0 Septum formation initiator ATG16 PF08614.6 gi|282165635|ref|YP_003358020.1| - 0.04 13.7 7.4 0.32 10.7 5.4 1.9 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF2968 PF11180.3 gi|282165635|ref|YP_003358020.1| - 0.04 13.2 3.2 0.056 12.8 2.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) KLRAQ PF10205.4 gi|282165635|ref|YP_003358020.1| - 0.043 13.8 5.6 0.068 13.2 3.9 1.4 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein Filament PF00038.16 gi|282165635|ref|YP_003358020.1| - 0.053 12.9 5.7 0.083 12.3 3.9 1.3 1 1 0 1 1 1 0 Intermediate filament protein Phage_GP20 PF06810.6 gi|282165635|ref|YP_003358020.1| - 0.054 12.9 3.2 0.084 12.3 2.2 1.4 1 0 0 1 1 1 0 Phage minor structural protein GP20 Laminin_II PF06009.7 gi|282165635|ref|YP_003358020.1| - 0.056 13.2 2.8 0.11 12.3 2.0 1.5 1 1 0 1 1 1 0 Laminin Domain II RTBV_P46 PF06216.6 gi|282165635|ref|YP_003358020.1| - 0.065 12.0 0.2 0.078 11.8 0.1 1.3 1 0 0 1 1 1 0 Rice tungro bacilliform virus P46 protein Reo_sigmaC PF04582.7 gi|282165635|ref|YP_003358020.1| - 0.092 11.9 1.1 0.12 11.5 0.8 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein APG6 PF04111.7 gi|282165635|ref|YP_003358020.1| - 0.11 11.5 6.3 0.13 11.2 4.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Spc24 PF08286.6 gi|282165635|ref|YP_003358020.1| - 0.12 12.0 3.5 0.22 11.2 2.2 1.7 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 GAS PF13851.1 gi|282165635|ref|YP_003358020.1| - 0.12 11.4 8.2 0.2 10.8 5.7 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF4201 PF13870.1 gi|282165635|ref|YP_003358020.1| - 0.17 11.3 7.8 1.6 8.1 3.7 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) IMD PF08397.6 gi|282165635|ref|YP_003358020.1| - 0.18 11.0 3.8 0.26 10.5 2.6 1.2 1 0 0 1 1 1 0 IRSp53/MIM homology domain GBP_C PF02841.9 gi|282165635|ref|YP_003358020.1| - 0.19 10.9 6.6 1.4 8.0 1.4 2.0 1 1 1 2 2 2 0 Guanylate-binding protein, C-terminal domain TMF_TATA_bd PF12325.3 gi|282165635|ref|YP_003358020.1| - 0.19 11.4 7.4 0.5 10.1 5.2 1.7 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Rab5-bind PF09311.6 gi|282165635|ref|YP_003358020.1| - 0.2 11.5 6.0 0.33 10.8 4.2 1.4 1 1 0 1 1 1 0 Rabaptin-like protein DASH_Dad2 PF08654.5 gi|282165635|ref|YP_003358020.1| - 0.2 11.6 2.6 0.25 11.3 0.5 2.0 1 1 0 1 1 1 0 DASH complex subunit Dad2 DUF724 PF05266.9 gi|282165635|ref|YP_003358020.1| - 0.23 11.0 5.7 0.3 10.6 4.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) TBPIP PF07106.8 gi|282165635|ref|YP_003358020.1| - 0.26 10.8 6.7 0.45 10.0 4.7 1.4 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HAUS6_N PF14661.1 gi|282165635|ref|YP_003358020.1| - 0.26 10.5 4.4 0.34 10.2 3.1 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus YlqD PF11068.3 gi|282165635|ref|YP_003358020.1| - 0.27 11.2 4.4 0.41 10.6 3.1 1.2 1 0 0 1 1 1 0 YlqD protein SlyX PF04102.7 gi|282165635|ref|YP_003358020.1| - 0.32 11.4 2.6 3.3 8.1 1.6 2.3 1 1 1 2 2 2 0 SlyX FlaC_arch PF05377.6 gi|282165635|ref|YP_003358020.1| - 0.39 10.6 2.7 0.4 10.5 0.6 2.0 2 0 0 2 2 1 0 Flagella accessory protein C (FlaC) Cortex-I_coil PF09304.5 gi|282165635|ref|YP_003358020.1| - 0.4 10.7 8.3 0.56 10.2 5.2 1.6 1 1 1 2 2 2 0 Cortexillin I, coiled coil Spc42p PF11544.3 gi|282165635|ref|YP_003358020.1| - 0.44 10.5 6.6 6.6 6.7 0.4 3.1 1 1 2 3 3 3 0 Spindle pole body component Spc42p AKNA PF12443.3 gi|282165635|ref|YP_003358020.1| - 0.47 10.5 4.0 0.93 9.5 2.4 1.7 1 1 1 2 2 2 0 AT-hook-containing transcription factor Atg14 PF10186.4 gi|282165635|ref|YP_003358020.1| - 0.55 9.1 6.2 0.68 8.8 4.3 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF2680 PF10925.3 gi|282165635|ref|YP_003358020.1| - 0.65 9.8 2.6 0.49 10.2 0.2 2.1 2 1 1 3 3 2 0 Protein of unknown function (DUF2680) DUF4200 PF13863.1 gi|282165635|ref|YP_003358020.1| - 0.71 9.8 9.0 0.23 11.4 1.1 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) DUF972 PF06156.8 gi|282165635|ref|YP_003358020.1| - 1.1 9.6 4.8 2.7 8.3 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Viral_P18 PF04521.8 gi|282165635|ref|YP_003358020.1| - 2.1 7.7 5.0 1.8 7.9 1.3 2.3 1 1 2 3 3 3 0 ssRNA positive strand viral 18kD cysteine rich protein DUF4140 PF13600.1 gi|282165635|ref|YP_003358020.1| - 3.3 8.1 6.8 0.52 10.7 1.9 1.8 2 1 0 2 2 1 0 N-terminal domain of unknown function (DUF4140) Gln-synt_C PF00120.19 gi|282165636|ref|YP_003358021.1| - 9.2e-101 336.3 0.0 1.1e-100 336.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|282165636|ref|YP_003358021.1| - 4.4e-32 109.5 0.1 7.9e-32 108.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain OB_RNB PF08206.6 gi|282165636|ref|YP_003358021.1| - 0.038 13.4 0.3 1 8.8 0.0 2.7 3 0 0 3 3 3 0 Ribonuclease B OB domain Peptidase_A24 PF01478.13 gi|282165638|ref|YP_003358023.1| - 3.4e-12 46.4 10.1 5.7e-12 45.7 7.0 1.4 1 0 0 1 1 1 1 Type IV leader peptidase family AAA_10 PF12846.2 gi|282165639|ref|YP_003358024.1| - 2.2e-15 56.8 0.0 6.6e-12 45.4 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|282165639|ref|YP_003358024.1| - 1.2e-13 51.4 0.0 1.3e-11 44.7 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF87 DUF853 PF05872.7 gi|282165639|ref|YP_003358024.1| - 4.9e-08 31.7 0.0 3.2e-07 29.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|282165639|ref|YP_003358024.1| - 1e-06 28.4 0.0 0.036 13.5 0.0 2.2 2 0 0 2 2 2 2 FtsK/SpoIIIE family Zot PF05707.7 gi|282165639|ref|YP_003358024.1| - 0.0016 17.9 0.0 0.0042 16.5 0.0 1.7 2 1 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|282165639|ref|YP_003358024.1| - 0.049 13.7 0.1 6.9 6.8 0.0 2.7 2 1 1 3 3 3 0 AAA domain Pribosyltran PF00156.22 gi|282165640|ref|YP_003358025.1| - 8.7e-29 99.7 0.1 1.3e-28 99.1 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|282165640|ref|YP_003358025.1| - 0.00039 19.6 0.0 0.00056 19.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Rsm22 PF09243.5 gi|282165640|ref|YP_003358025.1| - 0.0028 16.7 0.0 0.0036 16.3 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 PRTase_2 PF15609.1 gi|282165640|ref|YP_003358025.1| - 0.0046 16.2 0.0 0.01 15.1 0.0 1.5 2 0 0 2 2 2 1 Phosphoribosyl transferase DJ-1_PfpI PF01965.19 gi|282165641|ref|YP_003358026.1| - 1.1e-32 112.4 0.0 1.3e-32 112.2 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|282165641|ref|YP_003358026.1| - 3.6e-14 52.3 0.0 4.7e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|282165641|ref|YP_003358026.1| - 0.0012 18.4 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|282165641|ref|YP_003358026.1| - 0.0028 17.1 0.0 0.0031 16.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_5 PF13507.1 gi|282165641|ref|YP_003358026.1| - 0.13 11.1 0.0 0.24 10.2 0.0 1.5 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain T2SE PF00437.15 gi|282165642|ref|YP_003358027.1| - 3.4e-33 114.7 0.0 4.7e-33 114.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|282165642|ref|YP_003358027.1| - 0.018 15.0 0.1 0.041 13.8 0.1 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|282165642|ref|YP_003358027.1| - 0.045 13.2 0.3 0.1 12.1 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|282165642|ref|YP_003358027.1| - 0.15 11.4 0.1 0.41 10.0 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|282165642|ref|YP_003358027.1| - 0.16 12.0 0.0 0.59 10.2 0.0 2.0 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|282165642|ref|YP_003358027.1| - 0.21 10.4 0.0 0.38 9.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF4131 PF13567.1 gi|282165643|ref|YP_003358028.1| - 0.25 10.7 0.0 0.25 10.7 0.0 2.9 4 0 0 4 4 4 0 Domain of unknown function (DUF4131) Big_1 PF02369.11 gi|282165644|ref|YP_003358029.1| - 0.00022 21.0 3.9 0.00062 19.6 2.7 1.9 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|282165644|ref|YP_003358029.1| - 0.00044 20.2 1.4 0.0015 18.5 1.0 2.0 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|282165644|ref|YP_003358029.1| - 0.0039 17.2 0.2 0.0091 16.0 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) DUF4307 PF14155.1 gi|282165644|ref|YP_003358029.1| - 0.0065 16.2 0.5 0.0094 15.7 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4307) DAO PF01266.19 gi|282165644|ref|YP_003358029.1| - 0.071 12.0 0.1 0.083 11.7 0.0 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase DUF824 PF05688.6 gi|282165644|ref|YP_003358029.1| - 0.094 12.3 0.1 0.22 11.1 0.1 1.6 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) MG1 PF11974.3 gi|282165644|ref|YP_003358029.1| - 0.11 13.0 0.4 0.24 11.9 0.1 1.7 1 1 1 2 2 2 0 Alpha-2-macroglobulin MG1 domain Hydrolase_3 PF08282.7 gi|282165645|ref|YP_003358030.1| - 7.8e-29 101.0 0.0 2.5e-20 73.1 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|282165645|ref|YP_003358030.1| - 2.6e-07 31.2 0.3 2e-05 25.0 0.2 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|282165645|ref|YP_003358030.1| - 3.6e-06 26.4 0.0 6.4e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|282165645|ref|YP_003358030.1| - 0.0004 20.6 0.1 0.0092 16.1 0.0 2.5 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|282165645|ref|YP_003358030.1| - 0.0091 16.2 0.6 0.14 12.3 0.4 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase TPR_6 PF13174.1 gi|282165645|ref|YP_003358030.1| - 0.52 10.8 5.7 7 7.3 0.4 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat Usp PF00582.21 gi|282165646|ref|YP_003358031.1| - 2.6e-16 60.1 0.0 4.5e-11 43.1 0.0 3.4 2 2 0 2 2 2 2 Universal stress protein family HTH_42 PF06224.7 gi|282165647|ref|YP_003358032.1| - 5.9e-50 170.4 5.1 7.6e-50 170.0 3.5 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Flavoprotein PF02441.14 gi|282165648|ref|YP_003358033.1| - 1.8e-19 69.6 0.0 2.5e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein FMN_red PF03358.10 gi|282165649|ref|YP_003358034.1| - 1.8e-26 92.4 0.0 2.5e-26 92.0 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|282165649|ref|YP_003358034.1| - 0.0061 16.0 0.0 0.0079 15.7 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Acetyltransf_7 PF13508.1 gi|282165651|ref|YP_003358036.1| - 2.4e-10 40.4 0.0 3.1e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|282165651|ref|YP_003358036.1| - 8.2e-08 32.1 0.1 1.2e-07 31.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|282165651|ref|YP_003358036.1| - 9.1e-08 32.2 0.0 1.1e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|282165651|ref|YP_003358036.1| - 2.2e-05 24.2 0.0 0.00018 21.3 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|282165651|ref|YP_003358036.1| - 0.0041 16.8 0.1 0.01 15.5 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein DUF3749 PF12568.3 gi|282165651|ref|YP_003358036.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|282165651|ref|YP_003358036.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Rad51 PF08423.6 gi|282165652|ref|YP_003358037.1| - 4.3e-91 304.3 0.0 5.3e-91 304.0 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|282165652|ref|YP_003358037.1| - 2.3e-13 50.1 1.9 5.1e-13 48.9 1.0 1.8 2 0 0 2 2 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|282165652|ref|YP_003358037.1| - 5.8e-12 45.4 0.0 9e-12 44.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|282165652|ref|YP_003358037.1| - 8.8e-12 44.7 0.2 2.4e-10 39.9 0.1 2.1 1 1 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|282165652|ref|YP_003358037.1| - 4.2e-08 32.5 0.0 5.5e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH PF00633.18 gi|282165652|ref|YP_003358037.1| - 2.5e-07 30.0 1.8 0.0043 16.6 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|282165652|ref|YP_003358037.1| - 2.9e-06 27.0 0.1 8e-06 25.6 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|282165652|ref|YP_003358037.1| - 0.0003 20.6 0.0 0.00071 19.4 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.3 gi|282165652|ref|YP_003358037.1| - 0.00092 19.1 0.0 0.0041 17.0 0.0 2.1 2 0 0 2 2 1 1 IMS family HHH motif CobU PF02283.11 gi|282165652|ref|YP_003358037.1| - 0.0039 16.6 0.0 0.073 12.4 0.0 2.1 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA PF00004.24 gi|282165652|ref|YP_003358037.1| - 0.0042 17.2 0.1 0.015 15.5 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|282165652|ref|YP_003358037.1| - 0.0058 16.7 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain DNA_pol_lambd_f PF10391.4 gi|282165652|ref|YP_003358037.1| - 0.011 15.3 0.0 0.032 13.7 0.0 1.9 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda ATP-synt_ab PF00006.20 gi|282165652|ref|YP_003358037.1| - 0.014 14.8 0.0 0.03 13.8 0.0 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|282165652|ref|YP_003358037.1| - 0.027 14.7 0.2 0.15 12.4 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|282165652|ref|YP_003358037.1| - 0.034 13.7 0.0 0.098 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF4332 PF14229.1 gi|282165652|ref|YP_003358037.1| - 0.095 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) HHH_8 PF14716.1 gi|282165652|ref|YP_003358037.1| - 0.1 12.7 0.1 1.6 8.9 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix domain MacB_PCD PF12704.2 gi|282165653|ref|YP_003358038.1| - 3.5e-41 141.2 6.2 3.5e-41 141.2 4.3 2.3 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|282165653|ref|YP_003358038.1| - 1.3e-22 79.7 8.2 1.3e-22 79.7 5.7 2.3 2 0 0 2 2 2 1 FtsX-like permease family DUF4225 PF13988.1 gi|282165653|ref|YP_003358038.1| - 0.18 11.2 7.0 0.11 11.8 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4225) UPF0233 PF06781.7 gi|282165653|ref|YP_003358038.1| - 1.1 8.9 4.9 0.5 10.0 0.8 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) MacB_PCD PF12704.2 gi|282165654|ref|YP_003358039.1| - 6.8e-41 140.3 3.9 6.8e-41 140.3 2.7 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|282165654|ref|YP_003358039.1| - 3.8e-22 78.3 12.0 7.4e-22 77.3 4.2 2.3 2 0 0 2 2 2 2 FtsX-like permease family Uroplakin_II PF07353.7 gi|282165655|ref|YP_003358040.1| - 4.1e-05 23.0 0.8 7.2e-05 22.2 0.0 1.8 2 0 0 2 2 2 1 Uroplakin II NPCBM_assoc PF10633.4 gi|282165655|ref|YP_003358040.1| - 7e-05 22.8 6.6 0.042 13.9 0.1 3.8 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|282165655|ref|YP_003358040.1| - 0.0092 16.0 0.5 0.0092 16.0 0.4 2.7 2 1 0 2 2 2 1 Domain of unknown function DUF11 ABC_tran PF00005.22 gi|282165656|ref|YP_003358041.1| - 1.4e-32 112.8 0.0 1.8e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|282165656|ref|YP_003358041.1| - 1.4e-15 58.0 0.0 2e-13 50.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|282165656|ref|YP_003358041.1| - 4e-06 26.2 0.3 0.00018 20.8 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|282165656|ref|YP_003358041.1| - 0.00013 21.4 0.1 0.00022 20.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|282165656|ref|YP_003358041.1| - 0.00021 20.5 0.0 0.2 10.6 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|282165656|ref|YP_003358041.1| - 0.001 18.5 0.1 0.0028 17.1 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|282165656|ref|YP_003358041.1| - 0.0019 17.3 0.0 0.0035 16.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|282165656|ref|YP_003358041.1| - 0.004 17.1 0.0 0.0072 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain RNA12 PF10443.4 gi|282165656|ref|YP_003358041.1| - 0.0058 15.1 0.0 0.008 14.7 0.0 1.1 1 0 0 1 1 1 1 RNA12 protein AAA_22 PF13401.1 gi|282165656|ref|YP_003358041.1| - 0.0068 16.5 0.1 0.013 15.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|282165656|ref|YP_003358041.1| - 0.0082 16.9 0.2 0.022 15.5 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|282165656|ref|YP_003358041.1| - 0.0093 16.2 0.0 0.052 13.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|282165656|ref|YP_003358041.1| - 0.0095 16.2 0.0 0.014 15.7 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|282165656|ref|YP_003358041.1| - 0.018 14.4 0.0 0.043 13.2 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|282165656|ref|YP_003358041.1| - 0.055 13.3 0.1 0.14 12.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|282165656|ref|YP_003358041.1| - 0.058 12.4 0.1 5.5 6.0 0.0 2.1 2 0 0 2 2 2 0 KaiC SbcCD_C PF13558.1 gi|282165656|ref|YP_003358041.1| - 0.059 13.2 0.1 0.61 10.0 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|282165656|ref|YP_003358041.1| - 0.059 13.3 0.3 0.096 12.6 0.2 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|282165656|ref|YP_003358041.1| - 0.081 12.6 0.0 0.14 11.7 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase cobW PF02492.14 gi|282165656|ref|YP_003358041.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain IMPDH PF00478.20 gi|282165657|ref|YP_003358042.1| - 6.7e-136 452.7 9.7 7.7e-136 452.5 6.7 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|282165657|ref|YP_003358042.1| - 2e-28 97.8 4.9 8.2e-14 51.1 0.5 3.3 3 0 0 3 3 3 2 CBS domain NMO PF03060.10 gi|282165657|ref|YP_003358042.1| - 2.7e-10 39.9 12.1 9.1e-06 25.0 0.0 2.4 2 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|282165657|ref|YP_003358042.1| - 2.3e-08 33.2 6.7 1.2e-07 30.9 4.7 2.1 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|282165657|ref|YP_003358042.1| - 0.0011 18.0 5.6 0.0019 17.2 3.9 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.16 gi|282165657|ref|YP_003358042.1| - 0.0017 17.6 3.6 0.0017 17.6 2.5 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|282165657|ref|YP_003358042.1| - 0.0062 15.6 1.5 0.0062 15.6 1.0 2.5 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG HET-s_218-289 PF11558.3 gi|282165657|ref|YP_003358042.1| - 0.073 13.0 0.8 0.47 10.4 0.2 2.3 2 0 0 2 2 2 0 Het-s 218-289 PcrB PF01884.12 gi|282165657|ref|YP_003358042.1| - 0.49 9.6 14.1 0.058 12.6 0.4 4.1 4 1 0 4 4 4 0 PcrB family DUF556 PF04476.8 gi|282165658|ref|YP_003358043.1| - 1e-94 316.2 0.5 1.1e-94 316.0 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) QRPTase_C PF01729.14 gi|282165658|ref|YP_003358043.1| - 8e-06 25.4 0.0 4.7e-05 22.9 0.0 2.0 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Chlam_OMP6 PF03504.8 gi|282165658|ref|YP_003358043.1| - 0.082 13.1 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Chlamydia cysteine-rich outer membrane protein 6 DC_STAMP PF07782.8 gi|282165659|ref|YP_003358044.1| - 0.24 11.0 0.1 0.24 11.0 0.1 2.6 1 1 2 3 3 3 0 DC-STAMP-like protein Tmemb_cc2 PF10267.4 gi|282165659|ref|YP_003358044.1| - 0.37 9.3 1.7 0.41 9.1 1.1 1.2 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Vma12 PF11712.3 gi|282165659|ref|YP_003358044.1| - 2 8.1 4.2 0.28 10.8 0.5 1.5 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase tRNA_anti-codon PF01336.20 gi|282165660|ref|YP_003358045.1| - 3.6e-32 110.0 7.5 2.1e-11 43.5 0.3 3.3 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.1 gi|282165660|ref|YP_003358045.1| - 0.024 14.5 0.0 11 5.9 0.0 3.3 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain DUF3558 PF12079.3 gi|282165660|ref|YP_003358045.1| - 0.1 12.2 0.3 9.6 5.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3558) Rep_fac-A_C PF08646.5 gi|282165660|ref|YP_003358045.1| - 0.11 12.2 0.0 11 5.7 0.0 3.0 3 0 0 3 3 3 0 Replication factor-A C terminal domain Aconitase PF00330.15 gi|282165661|ref|YP_003358046.1| - 2.1e-86 290.2 0.1 9.7e-60 202.3 0.0 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|282165662|ref|YP_003358047.1| - 4.7e-23 81.7 0.0 1.6e-21 76.7 0.0 2.0 1 1 1 2 2 2 2 Aconitase C-terminal domain Iso_dh PF00180.15 gi|282165663|ref|YP_003358048.1| - 1.1e-91 307.3 0.0 1.3e-91 307.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF3480 PF11979.3 gi|282165663|ref|YP_003358048.1| - 0.077 11.6 0.0 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3480) HTH_27 PF13463.1 gi|282165664|ref|YP_003358049.1| - 7.5e-06 26.1 0.0 1.5e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|282165664|ref|YP_003358049.1| - 2e-05 24.3 0.0 4.9e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|282165664|ref|YP_003358049.1| - 0.00027 20.5 0.0 0.0012 18.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|282165664|ref|YP_003358049.1| - 0.00073 19.3 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|282165664|ref|YP_003358049.1| - 0.023 14.3 0.0 0.1 12.2 0.0 2.0 1 1 1 2 2 2 0 MarR family HTH_24 PF13412.1 gi|282165664|ref|YP_003358049.1| - 0.031 13.6 0.0 0.12 11.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Mrr_N PF14338.1 gi|282165664|ref|YP_003358049.1| - 0.049 13.7 0.1 0.21 11.6 0.0 2.0 2 0 0 2 2 2 0 Mrr N-terminal domain DUF2225 PF09986.4 gi|282165665|ref|YP_003358050.1| - 1.5e-26 93.2 0.0 2.2e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_8 PF13181.1 gi|282165665|ref|YP_003358050.1| - 3.8e-07 29.4 0.0 0.00069 19.2 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|282165665|ref|YP_003358050.1| - 8.3e-07 28.8 0.4 0.0028 17.5 0.0 2.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|282165665|ref|YP_003358050.1| - 6.6e-06 25.6 2.6 0.0059 16.4 0.2 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|282165665|ref|YP_003358050.1| - 2.4e-05 23.7 0.0 0.064 12.8 0.0 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|282165665|ref|YP_003358050.1| - 8.9e-05 22.6 0.1 0.62 10.6 0.0 2.9 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|282165665|ref|YP_003358050.1| - 0.00048 20.5 0.3 0.13 12.9 0.0 2.7 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|282165665|ref|YP_003358050.1| - 0.00049 19.7 0.3 0.0048 16.5 0.2 2.2 1 1 1 2 2 2 2 TPR repeat TPR_16 PF13432.1 gi|282165665|ref|YP_003358050.1| - 0.0035 17.9 0.3 0.34 11.6 0.4 2.6 1 1 1 2 2 2 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|282165665|ref|YP_003358050.1| - 0.0065 16.5 0.2 0.018 15.1 0.1 1.8 2 0 0 2 2 1 1 Anaphase-promoting complex, cyclosome, subunit 3 zf-H2C2_2 PF13465.1 gi|282165665|ref|YP_003358050.1| - 0.0071 16.5 5.1 1.4 9.3 1.2 2.7 2 0 0 2 2 2 2 Zinc-finger double domain CpXC PF14353.1 gi|282165665|ref|YP_003358050.1| - 0.009 15.9 1.0 0.051 13.5 0.7 2.1 1 1 0 1 1 1 1 CpXC protein TPR_7 PF13176.1 gi|282165665|ref|YP_003358050.1| - 0.027 14.2 2.2 1 9.3 0.1 2.9 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|282165665|ref|YP_003358050.1| - 0.034 14.0 0.3 12 5.9 0.0 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|282165665|ref|YP_003358050.1| - 0.076 13.3 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat zf-ISL3 PF14690.1 gi|282165665|ref|YP_003358050.1| - 0.084 12.9 0.4 6.7 6.8 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|282165665|ref|YP_003358050.1| - 0.11 11.7 2.3 0.83 8.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_6 PF13912.1 gi|282165665|ref|YP_003358050.1| - 0.3 11.0 3.9 2.1 8.3 0.1 2.6 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_5 PF13719.1 gi|282165665|ref|YP_003358050.1| - 0.38 10.3 2.9 4.3 7.0 0.0 2.6 3 0 0 3 3 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|282165665|ref|YP_003358050.1| - 0.46 10.8 4.1 1.7 8.9 2.8 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|282165665|ref|YP_003358050.1| - 0.51 10.0 3.0 5.8 6.6 0.0 2.7 3 0 0 3 3 2 0 zinc-ribbon domain Rad50_zn_hook PF04423.9 gi|282165665|ref|YP_003358050.1| - 0.6 9.6 0.0 0.6 9.6 0.0 2.3 3 0 0 3 3 2 0 Rad50 zinc hook motif zinc_ribbon_2 PF13240.1 gi|282165665|ref|YP_003358050.1| - 2.9 7.4 6.7 4.2 6.9 0.6 2.8 3 0 0 3 3 3 0 zinc-ribbon domain Sel1 PF08238.7 gi|282165665|ref|YP_003358050.1| - 5.3 7.8 6.0 2.9 8.6 0.2 2.7 3 0 0 3 3 2 0 Sel1 repeat zf-RING_3 PF14369.1 gi|282165665|ref|YP_003358050.1| - 6.7 6.8 8.1 7.1 6.7 0.0 3.1 3 0 0 3 3 3 0 zinc-finger DUF1610 PF07754.6 gi|282165665|ref|YP_003358050.1| - 9 6.5 11.9 1.4 9.0 1.2 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Rubrerythrin PF02915.12 gi|282165666|ref|YP_003358051.1| - 6.2e-21 75.1 3.3 9.6e-21 74.5 2.3 1.3 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|282165666|ref|YP_003358051.1| - 5.5e-08 32.8 4.0 1.2e-06 28.4 2.6 2.0 1 1 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|282165666|ref|YP_003358051.1| - 7.3e-08 32.6 5.0 2.3e-06 27.8 0.3 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) DUF3231 PF11553.3 gi|282165666|ref|YP_003358051.1| - 0.00014 21.3 3.9 0.039 13.4 0.2 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3231) Ferritin PF00210.19 gi|282165666|ref|YP_003358051.1| - 0.0004 20.1 2.6 0.002 17.8 0.5 2.1 2 0 0 2 2 2 1 Ferritin-like domain DUF892 PF05974.7 gi|282165666|ref|YP_003358051.1| - 0.0064 16.3 3.3 1 9.1 0.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF892) BPL_N PF09825.4 gi|282165666|ref|YP_003358051.1| - 0.064 12.0 0.2 0.08 11.7 0.1 1.1 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal DUF2408 PF10303.4 gi|282165666|ref|YP_003358051.1| - 0.078 13.0 0.4 0.18 11.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2408) Myc_N PF01056.13 gi|282165666|ref|YP_003358051.1| - 0.08 12.0 0.0 0.097 11.8 0.0 1.1 1 0 0 1 1 1 0 Myc amino-terminal region Imm31 PF15595.1 gi|282165666|ref|YP_003358051.1| - 0.18 11.5 2.6 0.47 10.2 0.6 2.1 2 0 0 2 2 2 0 Immunity protein 31 DDE_Tnp_1 PF01609.16 gi|282165667|ref|YP_003358052.1| - 2.4e-09 37.0 1.2 3.2e-09 36.6 0.8 1.2 1 0 0 1 1 1 1 Transposase DDE domain Vfa1 PF08432.5 gi|282165667|ref|YP_003358052.1| - 0.13 12.3 7.4 2.2 8.2 3.0 2.2 2 0 0 2 2 2 0 AAA-ATPase Vps4-associated protein 1 DNA_pol_E_B PF04042.11 gi|282165668|ref|YP_003358053.1| - 3e-16 59.3 0.0 4.9e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|282165668|ref|YP_003358053.1| - 5.4e-11 42.5 0.1 1.3e-10 41.3 0.1 1.6 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|282165668|ref|YP_003358053.1| - 6.2e-07 29.0 3.0 1.9e-06 27.4 2.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|282165668|ref|YP_003358053.1| - 1.1e-05 25.1 0.1 3.1e-05 23.7 0.0 1.8 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Peptidase_S24 PF00717.18 gi|282165669|ref|YP_003358054.1| - 0.00049 19.6 0.1 0.00095 18.7 0.1 1.5 1 0 0 1 1 1 1 Peptidase S24-like OTCace_N PF02729.16 gi|282165670|ref|YP_003358055.1| - 9.8e-48 161.4 0.0 1.8e-47 160.5 0.0 1.4 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|282165670|ref|YP_003358055.1| - 1e-36 126.1 0.0 1.4e-36 125.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|282165671|ref|YP_003358056.1| - 7.8e-37 125.2 0.2 1.1e-36 124.7 0.1 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|282165671|ref|YP_003358056.1| - 5.9e-19 67.2 0.7 1.1e-18 66.4 0.5 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain HMG-CoA_red PF00368.13 gi|282165672|ref|YP_003358057.1| - 4.1e-140 466.6 2.1 4.7e-140 466.4 1.5 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase GCD14 PF08704.5 gi|282165673|ref|YP_003358058.1| - 1.8e-15 57.1 0.0 2e-14 53.6 0.0 1.9 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|282165673|ref|YP_003358058.1| - 1.3e-10 41.8 0.0 1.8e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|282165673|ref|YP_003358058.1| - 5.1e-10 39.1 0.0 7e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|282165673|ref|YP_003358058.1| - 4.4e-09 35.7 0.0 6.4e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|282165673|ref|YP_003358058.1| - 9.8e-09 35.2 0.2 2.3e-08 34.0 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|282165673|ref|YP_003358058.1| - 2.3e-07 30.3 0.0 3.3e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|282165673|ref|YP_003358058.1| - 2.6e-07 30.3 0.0 3.7e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.7 gi|282165673|ref|YP_003358058.1| - 1.3e-06 28.7 0.0 2.5e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|282165673|ref|YP_003358058.1| - 1.5e-05 25.7 0.0 5.6e-05 23.9 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain PrmA PF06325.8 gi|282165673|ref|YP_003358058.1| - 2.6e-05 23.5 0.1 3e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|282165673|ref|YP_003358058.1| - 0.00053 20.3 0.0 0.00084 19.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|282165673|ref|YP_003358058.1| - 0.00061 19.5 0.1 0.002 17.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|282165673|ref|YP_003358058.1| - 0.00069 18.8 0.0 0.0014 17.7 0.0 1.5 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family UPF0020 PF01170.13 gi|282165673|ref|YP_003358058.1| - 0.016 14.7 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|282165673|ref|YP_003358058.1| - 0.018 15.4 0.1 0.049 14.1 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|282165673|ref|YP_003358058.1| - 0.025 13.9 0.0 0.075 12.4 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical protein 95 PNP_UDP_1 PF01048.15 gi|282165673|ref|YP_003358058.1| - 0.084 11.8 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Phosphorylase superfamily N6_N4_Mtase PF01555.13 gi|282165673|ref|YP_003358058.1| - 0.14 11.6 0.0 0.33 10.3 0.0 1.5 2 0 0 2 2 2 0 DNA methylase NAC PF01849.13 gi|282165674|ref|YP_003358059.1| - 2.2e-15 55.8 0.5 3.7e-15 55.1 0.4 1.4 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|282165674|ref|YP_003358059.1| - 4.9e-05 23.0 0.3 0.00022 20.9 0.0 2.0 2 0 0 2 2 2 1 UBA/TS-N domain DUF3867 PF12983.2 gi|282165674|ref|YP_003358059.1| - 0.0068 16.4 0.1 0.0075 16.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3867) Semialdhyde_dh PF01118.19 gi|282165674|ref|YP_003358059.1| - 0.053 13.8 0.1 0.19 12.0 0.1 1.8 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain CUE PF02845.11 gi|282165674|ref|YP_003358059.1| - 0.14 11.6 0.0 0.41 10.1 0.0 1.8 2 0 0 2 2 2 0 CUE domain