# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|282162671|ref|YP_003355056.1| - 1e-23 83.1 0.1 2.5e-23 81.8 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|282162671|ref|YP_003355056.1| - 1.5e-11 44.7 0.0 3.8e-11 43.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|282162671|ref|YP_003355056.1| - 1.3e-10 41.9 0.0 2.9e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|282162671|ref|YP_003355056.1| - 8.1e-08 32.8 0.7 7.2e-07 29.7 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|282162671|ref|YP_003355056.1| - 4e-07 29.6 0.0 8.4e-07 28.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|282162671|ref|YP_003355056.1| - 2.4e-05 24.3 0.0 8.9e-05 22.5 0.0 1.9 2 0 0 2 2 2 1 NACHT domain ATPase_2 PF01637.18 gi|282162671|ref|YP_003355056.1| - 4.7e-05 23.4 1.3 0.00025 21.1 1.3 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|282162671|ref|YP_003355056.1| - 6.5e-05 22.7 0.1 0.00012 21.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|282162671|ref|YP_003355056.1| - 0.00062 19.8 0.1 0.0021 18.1 0.1 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|282162671|ref|YP_003355056.1| - 0.00079 19.2 2.3 0.29 10.9 0.1 2.7 2 1 0 3 3 3 2 DEAD/DEAH box helicase KAP_NTPase PF07693.14 gi|282162671|ref|YP_003355056.1| - 0.0018 17.6 0.1 0.49 9.6 0.0 2.3 2 0 0 2 2 2 1 KAP family P-loop domain DUF815 PF05673.13 gi|282162671|ref|YP_003355056.1| - 0.0019 17.4 0.0 0.012 14.8 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|282162671|ref|YP_003355056.1| - 0.0023 17.8 0.8 0.015 15.2 0.8 2.1 1 1 0 1 1 1 1 Bacterial dnaA protein T2SSE PF00437.20 gi|282162671|ref|YP_003355056.1| - 0.0039 16.3 0.0 0.008 15.3 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.6 gi|282162671|ref|YP_003355056.1| - 0.005 16.9 0.1 0.012 15.6 0.1 1.7 1 0 0 1 1 1 1 AAA domain Kinesin PF00225.23 gi|282162671|ref|YP_003355056.1| - 0.0051 15.8 0.0 0.0077 15.2 0.0 1.4 1 0 0 1 1 1 1 Kinesin motor domain Microtub_bd PF16796.5 gi|282162671|ref|YP_003355056.1| - 0.0058 16.6 0.1 0.022 14.7 0.0 2.0 3 0 0 3 3 1 1 Microtubule binding AAA_18 PF13238.6 gi|282162671|ref|YP_003355056.1| - 0.0089 16.6 0.0 0.027 15.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|282162671|ref|YP_003355056.1| - 0.0094 15.5 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_assoc_2 PF16193.5 gi|282162671|ref|YP_003355056.1| - 0.012 16.0 0.2 0.033 14.5 0.2 1.8 1 0 0 1 1 1 0 AAA C-terminal domain Sigma54_activat PF00158.26 gi|282162671|ref|YP_003355056.1| - 0.017 14.8 0.1 0.079 12.7 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain RuvB_N PF05496.12 gi|282162671|ref|YP_003355056.1| - 0.02 14.7 0.1 0.33 10.7 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|282162671|ref|YP_003355056.1| - 0.026 14.6 1.6 0.55 10.3 1.6 2.4 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) FtsK_SpoIIIE PF01580.18 gi|282162671|ref|YP_003355056.1| - 0.034 13.5 0.1 0.084 12.2 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF2075 PF09848.9 gi|282162671|ref|YP_003355056.1| - 0.05 12.8 0.0 0.07 12.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|282162671|ref|YP_003355056.1| - 0.052 12.8 0.1 0.19 11.0 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.14 gi|282162671|ref|YP_003355056.1| - 0.064 13.3 0.1 0.2 11.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) PIF1 PF05970.14 gi|282162671|ref|YP_003355056.1| - 0.09 11.9 0.0 0.15 11.2 0.0 1.4 1 1 0 1 1 1 0 PIF1-like helicase ABC_tran PF00005.27 gi|282162671|ref|YP_003355056.1| - 0.094 13.2 0.2 0.29 11.7 0.2 2.2 1 1 0 1 1 1 0 ABC transporter AAA_19 PF13245.6 gi|282162671|ref|YP_003355056.1| - 0.12 12.7 0.2 0.31 11.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|282162671|ref|YP_003355056.1| - 0.17 12.3 0.0 0.53 10.7 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.6 gi|282162671|ref|YP_003355056.1| - 0.4 11.1 5.1 5 7.6 5.1 2.3 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|282162671|ref|YP_003355056.1| - 1.9 8.5 4.8 2.8 8.0 0.4 2.6 2 1 1 3 3 3 0 Helicase HerA, central domain KGG PF10685.9 gi|282162672|ref|YP_003355057.1| - 2.1e-18 65.9 26.8 0.00017 21.8 0.1 6.2 6 0 0 6 6 6 5 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282162672|ref|YP_003355057.1| - 5.2e-09 36.5 26.9 1.5e-06 28.7 10.3 2.4 1 1 1 2 2 2 2 Small hydrophilic plant seed protein zf-GRF PF06839.12 gi|282162672|ref|YP_003355057.1| - 0.61 10.2 3.2 49 4.1 0.1 3.2 3 0 0 3 3 3 0 GRF zinc finger DUF1674 PF07896.12 gi|282162672|ref|YP_003355057.1| - 2.6 8.6 13.1 3.7 8.1 0.6 3.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1674) Peptidase_S24 PF00717.23 gi|282162673|ref|YP_003355058.1| - 0.0028 17.6 0.1 0.0052 16.7 0.1 1.5 1 1 0 1 1 1 1 Peptidase S24-like AhpC-TSA PF00578.21 gi|282162674|ref|YP_003355059.1| - 8.4e-25 87.1 0.0 1.1e-24 86.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|282162674|ref|YP_003355059.1| - 2.9e-13 49.8 0.0 3.8e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|282162674|ref|YP_003355059.1| - 0.037 14.2 0.0 0.064 13.4 0.0 1.5 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme Cupin_2 PF07883.11 gi|282162675|ref|YP_003355060.1| - 6.7e-11 41.8 0.0 9.5e-11 41.3 0.0 1.3 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|282162675|ref|YP_003355060.1| - 0.00032 20.6 0.0 0.00041 20.3 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DZR PF12773.7 gi|282162675|ref|YP_003355060.1| - 0.0047 16.9 0.2 0.0091 16.0 0.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|282162675|ref|YP_003355060.1| - 0.0052 16.9 0.2 0.015 15.4 0.2 1.8 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|282162675|ref|YP_003355060.1| - 0.0071 15.8 0.6 0.014 14.9 0.6 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 gi|282162675|ref|YP_003355060.1| - 0.013 15.5 2.1 0.6 10.2 0.1 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|282162675|ref|YP_003355060.1| - 0.022 14.1 1.0 3.9 7.0 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|282162675|ref|YP_003355060.1| - 0.028 14.3 1.3 5.7 6.9 0.1 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS AraC_binding PF02311.19 gi|282162675|ref|YP_003355060.1| - 0.037 13.9 0.0 0.047 13.6 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|282162675|ref|YP_003355060.1| - 0.05 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) zf_UBZ PF18439.1 gi|282162675|ref|YP_003355060.1| - 0.067 12.8 0.4 5.8 6.6 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Cupin_1 PF00190.22 gi|282162675|ref|YP_003355060.1| - 0.2 11.3 0.0 0.36 10.4 0.0 1.5 1 1 0 1 1 1 0 Cupin PQQ_2 PF13360.6 gi|282162676|ref|YP_003355061.1| - 2.1e-69 233.8 9.7 2.2e-24 86.4 0.3 3.7 1 1 3 4 4 4 4 PQQ-like domain PQQ_3 PF13570.6 gi|282162676|ref|YP_003355061.1| - 1.8e-67 222.3 33.9 3e-09 37.1 0.2 8.6 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|282162676|ref|YP_003355061.1| - 4.2e-46 152.8 25.1 3.3e-08 33.1 0.1 7.9 8 0 0 8 8 8 7 PQQ enzyme repeat WD40_like PF17005.5 gi|282162676|ref|YP_003355061.1| - 0.00044 19.7 0.0 0.089 12.1 0.0 2.8 1 1 1 3 3 3 1 WD40-like domain Reg_prop PF07494.11 gi|282162676|ref|YP_003355061.1| - 0.64 10.4 10.3 36 5.1 0.0 6.2 8 0 0 8 8 8 0 Two component regulator propeller Glyco_hydro_15 PF00723.21 gi|282162677|ref|YP_003355062.1| - 7.7e-09 34.8 0.3 0.0067 15.3 0.0 3.4 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 Glyco_transf_36 PF06165.11 gi|282162677|ref|YP_003355062.1| - 0.11 11.9 0.0 0.25 10.7 0.0 1.5 1 1 0 1 1 1 0 Glycosyltransferase family 36 SRP54 PF00448.22 gi|282162678|ref|YP_003355063.1| - 3.4e-74 248.8 0.5 4.5e-74 248.3 0.5 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|282162678|ref|YP_003355063.1| - 3.1e-13 49.7 0.2 9.2e-12 45.0 0.1 2.8 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain AAA_17 PF13207.6 gi|282162678|ref|YP_003355063.1| - 5.5e-07 30.1 0.2 5.5e-07 30.1 0.2 2.5 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.12 gi|282162678|ref|YP_003355063.1| - 3.6e-06 26.4 0.1 6e-06 25.7 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|282162678|ref|YP_003355063.1| - 4.5e-06 27.2 1.7 8e-06 26.3 0.1 2.1 1 1 1 2 2 2 1 AAA ATPase domain DUF2075 PF09848.9 gi|282162678|ref|YP_003355063.1| - 1.3e-05 24.6 0.4 2e-05 24.0 0.4 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|282162678|ref|YP_003355063.1| - 4e-05 23.4 2.2 0.00015 21.6 2.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|282162678|ref|YP_003355063.1| - 4.1e-05 23.9 0.0 9.5e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|282162678|ref|YP_003355063.1| - 0.0001 22.2 0.0 0.00018 21.4 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_19 PF13245.6 gi|282162678|ref|YP_003355063.1| - 0.00015 22.1 0.1 0.00025 21.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|282162678|ref|YP_003355063.1| - 0.00017 21.3 0.2 0.0059 16.3 0.1 2.4 2 0 0 2 2 2 1 Thymidylate kinase AAA_28 PF13521.6 gi|282162678|ref|YP_003355063.1| - 0.00027 21.2 0.3 0.00056 20.2 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|282162678|ref|YP_003355063.1| - 0.00061 20.0 0.1 0.0013 18.9 0.0 1.6 2 0 0 2 2 1 1 AAA domain NTPase_1 PF03266.15 gi|282162678|ref|YP_003355063.1| - 0.00063 19.7 1.6 0.0022 17.9 1.6 1.9 1 1 0 1 1 1 1 NTPase KTI12 PF08433.10 gi|282162678|ref|YP_003355063.1| - 0.00077 19.0 0.1 0.0014 18.1 0.1 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA PF00004.29 gi|282162678|ref|YP_003355063.1| - 0.0011 19.4 1.0 0.0062 17.0 1.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|282162678|ref|YP_003355063.1| - 0.0017 18.0 0.9 0.0047 16.5 0.9 1.7 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ResIII PF04851.15 gi|282162678|ref|YP_003355063.1| - 0.0018 18.3 0.7 0.0042 17.1 0.2 1.7 2 1 0 2 2 1 1 Type III restriction enzyme, res subunit DUF853 PF05872.12 gi|282162678|ref|YP_003355063.1| - 0.0022 16.7 0.3 0.016 13.9 0.2 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) ABC_tran PF00005.27 gi|282162678|ref|YP_003355063.1| - 0.004 17.7 0.1 0.013 16.0 0.0 1.8 2 0 0 2 2 2 1 ABC transporter SRPRB PF09439.10 gi|282162678|ref|YP_003355063.1| - 0.0044 16.5 0.3 0.39 10.1 0.1 2.2 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_18 PF13238.6 gi|282162678|ref|YP_003355063.1| - 0.0075 16.8 0.0 0.017 15.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain Fe-ADH PF00465.19 gi|282162678|ref|YP_003355063.1| - 0.012 14.4 0.9 0.11 11.3 0.5 2.1 1 1 2 3 3 3 0 Iron-containing alcohol dehydrogenase ATPase PF06745.13 gi|282162678|ref|YP_003355063.1| - 0.014 14.8 0.1 0.022 14.1 0.1 1.2 1 0 0 1 1 1 0 KaiC TPP_enzyme_M PF00205.22 gi|282162678|ref|YP_003355063.1| - 0.019 14.7 0.1 0.31 10.8 0.1 2.6 1 1 1 2 2 2 0 Thiamine pyrophosphate enzyme, central domain PPK2 PF03976.14 gi|282162678|ref|YP_003355063.1| - 0.024 14.2 0.0 0.042 13.3 0.0 1.4 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) MMR_HSR1 PF01926.23 gi|282162678|ref|YP_003355063.1| - 0.024 14.7 1.3 0.14 12.3 1.3 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase KdpD PF02702.17 gi|282162678|ref|YP_003355063.1| - 0.025 14.1 0.6 0.05 13.1 0.5 1.5 1 1 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_7 PF12775.7 gi|282162678|ref|YP_003355063.1| - 0.026 14.0 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region MeaB PF03308.16 gi|282162678|ref|YP_003355063.1| - 0.027 13.5 0.1 0.052 12.5 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATPase_2 PF01637.18 gi|282162678|ref|YP_003355063.1| - 0.05 13.5 0.7 0.084 12.8 0.1 1.6 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea CLP1_P PF16575.5 gi|282162678|ref|YP_003355063.1| - 0.056 13.2 0.2 0.73 9.6 0.0 2.1 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Helicase_RecD PF05127.14 gi|282162678|ref|YP_003355063.1| - 0.06 13.2 0.2 0.1 12.4 0.2 1.4 1 0 0 1 1 1 0 Helicase CbiA PF01656.23 gi|282162678|ref|YP_003355063.1| - 0.064 13.3 1.2 0.24 11.4 1.0 2.2 2 1 0 2 2 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.12 gi|282162678|ref|YP_003355063.1| - 0.073 13.0 0.1 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 NACHT domain MobB PF03205.14 gi|282162678|ref|YP_003355063.1| - 0.074 13.0 1.4 0.15 12.0 0.2 1.9 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B KAP_NTPase PF07693.14 gi|282162678|ref|YP_003355063.1| - 0.086 12.1 0.1 0.24 10.6 0.1 1.8 1 1 0 1 1 1 0 KAP family P-loop domain T2SSE PF00437.20 gi|282162678|ref|YP_003355063.1| - 0.12 11.5 1.4 0.21 10.6 0.4 1.8 1 1 0 2 2 2 0 Type II/IV secretion system protein AAA_14 PF13173.6 gi|282162678|ref|YP_003355063.1| - 0.12 12.4 0.2 0.4 10.7 0.1 1.9 1 1 1 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|282162678|ref|YP_003355063.1| - 0.19 12.2 0.1 0.19 12.2 0.1 2.0 2 0 0 2 2 1 0 AAA domain DUF87 PF01935.17 gi|282162678|ref|YP_003355063.1| - 0.49 10.4 3.2 0.87 9.6 0.5 2.2 2 1 0 2 2 2 0 Helicase HerA, central domain Prefoldin PF02996.17 gi|282162679|ref|YP_003355064.1| - 1.7e-23 82.8 1.3 1.9e-23 82.6 0.9 1.3 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|282162679|ref|YP_003355064.1| - 0.00012 22.0 3.2 0.0089 16.0 1.0 2.1 2 0 0 2 2 2 2 Prefoldin subunit DUF2205 PF10224.9 gi|282162679|ref|YP_003355064.1| - 0.0074 16.3 5.5 0.47 10.5 1.1 2.4 2 0 0 2 2 2 2 Short coiled-coil protein TRPM_tetra PF16519.5 gi|282162679|ref|YP_003355064.1| - 0.022 14.9 0.8 0.04 14.0 0.8 1.4 1 0 0 1 1 1 0 Tetramerisation domain of TRPM PspA_IM30 PF04012.12 gi|282162679|ref|YP_003355064.1| - 0.11 12.1 9.4 0.16 11.5 2.1 2.1 2 0 0 2 2 2 0 PspA/IM30 family Trimer_CC PF08954.11 gi|282162679|ref|YP_003355064.1| - 3.6 7.2 8.8 0.25 10.9 2.1 2.1 2 0 0 2 2 2 0 Trimerisation motif YqjK PF13997.6 gi|282162679|ref|YP_003355064.1| - 3.8 7.8 6.8 2.6 8.4 1.3 2.3 2 1 0 2 2 2 0 YqjK-like protein Ribosomal_L18A PF01775.17 gi|282162680|ref|YP_003355065.1| - 3e-12 46.7 0.2 3.4e-12 46.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|282162681|ref|YP_003355066.1| - 1.9e-68 229.7 0.0 2.5e-68 229.4 0.0 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|282162682|ref|YP_003355067.1| - 3.4e-10 40.0 0.1 3.9e-10 39.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|282162683|ref|YP_003355068.1| - 7.4e-21 73.5 9.4 8.9e-21 73.3 9.4 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Diphthami_syn_2 PF01902.17 gi|282162684|ref|YP_003355069.1| - 0.097 12.2 0.0 0.31 10.5 0.0 1.9 2 1 0 2 2 2 0 Diphthamide synthase tRNA_Me_trans PF03054.16 gi|282162684|ref|YP_003355069.1| - 0.13 11.0 0.0 0.32 9.8 0.0 1.7 1 1 0 1 1 1 0 tRNA methyl transferase dsDNA_bind PF01984.20 gi|282162685|ref|YP_003355070.1| - 7.3e-29 100.3 14.5 8.2e-29 100.1 14.5 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF4355 PF14265.6 gi|282162685|ref|YP_003355070.1| - 0.0018 18.5 7.2 0.0019 18.4 6.5 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4355) SDA1 PF05285.12 gi|282162685|ref|YP_003355070.1| - 0.024 14.1 4.0 0.025 14.0 4.0 1.0 1 0 0 1 1 1 0 SDA1 DUF3605 PF12239.8 gi|282162685|ref|YP_003355070.1| - 0.11 12.8 0.6 0.11 12.8 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3605) DUF4192 PF13830.6 gi|282162685|ref|YP_003355070.1| - 0.77 9.8 4.9 0.9 9.5 4.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4192) Ribosomal_S19e PF01090.19 gi|282162686|ref|YP_003355071.1| - 2.2e-56 189.3 0.1 2.5e-56 189.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e SatRNA_48 PF17485.2 gi|282162686|ref|YP_003355071.1| - 0.065 12.3 0.0 0.083 12.0 0.0 1.2 1 0 0 1 1 1 0 Satellite RNA 48 kDa protein RuvB_C PF05491.13 gi|282162686|ref|YP_003355071.1| - 0.081 12.8 0.0 3.3 7.6 0.0 2.1 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain GntR PF00392.21 gi|282162686|ref|YP_003355071.1| - 0.085 12.5 0.1 0.25 11.0 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|282162686|ref|YP_003355071.1| - 0.096 13.0 0.0 0.32 11.4 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator TrmB PF01978.19 gi|282162686|ref|YP_003355071.1| - 0.14 12.1 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|282162686|ref|YP_003355071.1| - 0.19 11.7 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix RimK PF08443.11 gi|282162687|ref|YP_003355072.1| - 2.4e-05 24.0 0.0 0.00013 21.6 0.0 1.9 1 1 0 1 1 1 1 RimK-like ATP-grasp domain R2K_2 PF18299.1 gi|282162687|ref|YP_003355072.1| - 0.00073 19.4 0.0 0.0091 15.9 0.0 2.2 2 1 0 2 2 2 1 ATP-grasp domain, R2K clade family 2 R2K_3 PF14243.6 gi|282162687|ref|YP_003355072.1| - 0.005 16.9 0.0 0.014 15.4 0.0 1.7 2 1 0 2 2 2 1 ATP-grasp domain, R2K clade family 3 RLAN PF14401.6 gi|282162688|ref|YP_003355073.1| - 1.4e-39 135.1 0.0 1.8e-39 134.8 0.0 1.0 1 0 0 1 1 1 1 RimK-like ATPgrasp N-terminal domain UPF0147 PF03685.13 gi|282162689|ref|YP_003355074.1| - 3.6e-36 123.1 3.1 4e-36 122.9 3.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|282162689|ref|YP_003355074.1| - 0.029 14.7 0.1 2.4 8.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) SPP PF06550.11 gi|282162690|ref|YP_003355075.1| - 6.1e-83 278.5 26.6 6.8e-83 278.4 26.6 1.0 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease DUF2102 PF09875.9 gi|282162691|ref|YP_003355076.1| - 5.2e-09 35.8 0.0 5.9e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Elf1 PF05129.13 gi|282162692|ref|YP_003355077.1| - 0.0043 17.1 5.2 0.072 13.1 0.4 2.3 2 0 0 2 2 2 2 Transcription elongation factor Elf1 like Cys_rich_KTR PF14205.6 gi|282162692|ref|YP_003355077.1| - 0.037 13.8 0.2 0.037 13.8 0.2 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR Lar_restr_allev PF14354.6 gi|282162692|ref|YP_003355077.1| - 0.053 13.9 5.8 2.4 8.6 0.1 2.5 2 1 0 2 2 2 0 Restriction alleviation protein Lar NMD3 PF04981.13 gi|282162692|ref|YP_003355077.1| - 0.054 12.9 9.8 0.076 12.5 0.8 2.0 1 1 1 2 2 2 0 NMD3 family OrfB_Zn_ribbon PF07282.11 gi|282162692|ref|YP_003355077.1| - 0.12 12.4 3.2 1.9 8.5 0.4 2.3 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|282162692|ref|YP_003355077.1| - 0.12 11.9 4.6 0.74 9.4 1.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding DUF35_N PF12172.8 gi|282162692|ref|YP_003355077.1| - 0.13 12.1 9.4 3.6 7.6 1.6 3.5 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PhnA_Zn_Ribbon PF08274.12 gi|282162692|ref|YP_003355077.1| - 0.52 10.3 14.1 6.8 6.7 0.1 3.5 3 1 0 3 3 3 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.7 gi|282162692|ref|YP_003355077.1| - 0.81 9.7 13.5 5.4 7.1 1.1 3.4 2 2 1 3 3 3 0 Transposase zinc-ribbon domain DZR PF12773.7 gi|282162692|ref|YP_003355077.1| - 0.88 9.6 14.6 0.24 11.4 1.5 2.8 1 1 1 2 2 2 0 Double zinc ribbon YdjO PF14169.6 gi|282162692|ref|YP_003355077.1| - 1.5 8.6 0.0 1.5 8.6 0.0 2.6 3 0 0 3 3 3 0 Cold-inducible protein YdjO Zn-ribbon_8 PF09723.10 gi|282162692|ref|YP_003355077.1| - 1.7 8.8 12.5 4.4 7.5 1.4 3.6 2 2 1 3 3 3 0 Zinc ribbon domain zf_Rg PF17915.1 gi|282162692|ref|YP_003355077.1| - 5.1 6.6 12.0 0.39 10.1 1.6 3.2 2 2 0 3 3 3 0 Reverse gyrase zinc finger eIF-5_eIF-2B PF01873.17 gi|282162692|ref|YP_003355077.1| - 8.1 6.4 15.9 3.2 7.7 1.8 2.4 2 1 0 2 2 2 0 Domain found in IF2B/IF5 zinc_ribbon_2 PF13240.6 gi|282162692|ref|YP_003355077.1| - 9.9 6.0 16.3 2.2 8.1 0.4 4.1 4 0 0 4 4 4 0 zinc-ribbon domain Metallophos_2 PF12850.7 gi|282162693|ref|YP_003355078.1| - 7.1e-23 81.6 0.0 1.7e-22 80.4 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|282162693|ref|YP_003355078.1| - 7.4e-17 62.5 0.0 1.2e-16 61.9 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|282162693|ref|YP_003355078.1| - 4.8e-14 52.3 0.0 1.4e-09 37.7 0.0 2.3 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily VWA_CoxE PF05762.14 gi|282162693|ref|YP_003355078.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein ATPase PF06745.13 gi|282162694|ref|YP_003355079.1| - 1.5e-43 148.8 0.0 1.9e-43 148.5 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|282162694|ref|YP_003355079.1| - 1.6e-05 24.6 0.0 2.2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|282162694|ref|YP_003355079.1| - 0.03 13.6 0.0 0.051 12.8 0.0 1.3 1 0 0 1 1 1 0 Rad51 DUF2075 PF09848.9 gi|282162694|ref|YP_003355079.1| - 0.046 13.0 0.1 0.069 12.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) GvpD PF07088.11 gi|282162694|ref|YP_003355079.1| - 0.055 12.1 0.0 0.063 11.9 0.0 1.4 1 1 0 1 1 1 0 GvpD gas vesicle protein AAA_16 PF13191.6 gi|282162694|ref|YP_003355079.1| - 0.065 13.6 0.1 0.084 13.3 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain RecA PF00154.21 gi|282162694|ref|YP_003355079.1| - 0.067 12.7 0.2 0.12 11.9 0.3 1.4 1 1 0 1 1 1 0 recA bacterial DNA recombination protein DnaB_C PF03796.15 gi|282162694|ref|YP_003355079.1| - 0.097 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain T2SSE PF00437.20 gi|282162694|ref|YP_003355079.1| - 0.24 10.5 0.0 0.31 10.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein APH PF01636.23 gi|282162695|ref|YP_003355080.1| - 2e-07 31.2 0.0 2.8e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family HAD_2 PF13419.6 gi|282162696|ref|YP_003355081.1| - 3.5e-23 82.6 0.0 4.6e-21 75.7 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|282162696|ref|YP_003355081.1| - 7.3e-12 46.0 0.0 1.4e-11 45.1 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|282162696|ref|YP_003355081.1| - 2.6e-09 37.0 0.1 5.3e-09 36.0 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|282162696|ref|YP_003355081.1| - 0.00088 19.7 0.2 1.3 9.3 0.0 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.21 gi|282162697|ref|YP_003355082.1| - 1.9e-19 70.7 0.0 1.4e-16 61.4 0.0 2.1 2 0 0 2 2 2 2 Radical SAM superfamily B12-binding PF02310.19 gi|282162697|ref|YP_003355082.1| - 2.3e-18 66.4 0.0 3.3e-17 62.6 0.0 2.2 2 0 0 2 2 2 1 B12 binding domain Glyco_trans_4_4 PF13579.6 gi|282162697|ref|YP_003355082.1| - 0.0082 16.6 0.1 0.19 12.1 0.0 2.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyoxalase PF00903.25 gi|282162698|ref|YP_003355083.1| - 1.7e-11 44.4 0.0 3.7e-11 43.3 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|282162698|ref|YP_003355083.1| - 1.3e-08 35.0 0.0 1.7e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|282162698|ref|YP_003355083.1| - 7.1e-05 23.5 0.0 8.8e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|282162698|ref|YP_003355083.1| - 0.0007 19.7 0.0 0.0062 16.7 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase-like domain tRNA-synt_1f PF01921.18 gi|282162699|ref|YP_003355084.1| - 1.5e-88 297.1 0.0 2.8e-88 296.3 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|282162699|ref|YP_003355084.1| - 0.00067 18.5 0.1 0.0019 17.0 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (M) Hexapep PF00132.24 gi|282162700|ref|YP_003355085.1| - 4.6e-15 54.7 6.8 3.3e-08 33.0 1.0 3.9 3 1 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|282162700|ref|YP_003355085.1| - 0.00018 21.2 11.0 0.0028 17.4 2.7 3.1 1 1 1 2 2 2 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|282162700|ref|YP_003355085.1| - 0.066 12.1 0.1 0.13 11.1 0.1 1.4 1 1 0 1 1 1 0 L-fucokinase DUF4954 PF16314.5 gi|282162700|ref|YP_003355085.1| - 0.14 10.3 1.2 0.16 10.0 1.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) CTP_transf_like PF01467.26 gi|282162701|ref|YP_003355086.1| - 1.5e-15 57.6 0.0 1.8e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|282162701|ref|YP_003355086.1| - 0.097 12.6 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 FAD synthetase NTPase_I-T PF01931.18 gi|282162702|ref|YP_003355087.1| - 1.5e-53 180.9 0.0 1.7e-53 180.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Pur_DNA_glyco PF02245.16 gi|282162703|ref|YP_003355088.1| - 4.4e-73 244.4 0.0 5e-73 244.3 0.0 1.0 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) PAS PF00989.25 gi|282162704|ref|YP_003355089.1| - 1.1e-30 106.0 0.2 3.3e-13 49.6 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|282162704|ref|YP_003355089.1| - 5.2e-28 97.3 1.5 1e-13 51.4 0.0 3.7 3 1 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|282162704|ref|YP_003355089.1| - 1.8e-25 89.3 0.0 2.7e-11 43.7 0.0 4.1 4 0 0 4 4 4 2 PAS fold PAS_3 PF08447.12 gi|282162704|ref|YP_003355089.1| - 1.9e-21 76.1 0.0 5.8e-14 52.1 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|282162704|ref|YP_003355089.1| - 4.7e-20 71.2 0.2 7.1e-06 25.9 0.0 4.1 3 1 1 4 4 4 3 PAS domain HATPase_c PF02518.26 gi|282162704|ref|YP_003355089.1| - 7.1e-18 65.1 0.0 1.6e-17 64.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|282162704|ref|YP_003355089.1| - 0.00022 21.4 0.3 0.16 12.1 0.0 3.3 2 1 0 2 2 2 1 PAS fold PAS_11 PF14598.6 gi|282162704|ref|YP_003355089.1| - 0.0064 16.6 0.0 0.027 14.6 0.0 2.0 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|282162704|ref|YP_003355089.1| - 0.0067 16.4 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|282162704|ref|YP_003355089.1| - 0.029 14.0 0.1 12 5.5 0.0 2.9 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain HisKA PF00512.25 gi|282162704|ref|YP_003355089.1| - 0.035 14.1 0.3 0.035 14.1 0.3 2.6 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|282162704|ref|YP_003355089.1| - 0.067 13.1 0.0 0.2 11.5 0.0 1.8 1 0 0 1 1 1 0 GHKL domain KGG PF10685.9 gi|282162705|ref|YP_003355090.1| - 1.2e-13 50.9 7.4 0.00017 21.8 0.4 3.6 3 0 0 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282162705|ref|YP_003355090.1| - 1.1e-06 29.1 10.9 2.3e-06 28.0 10.9 1.6 1 1 0 1 1 1 1 Small hydrophilic plant seed protein SASP PF00269.20 gi|282162705|ref|YP_003355090.1| - 0.066 13.2 10.5 0.72 9.9 0.9 2.6 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type Porin_1 PF00267.21 gi|282162705|ref|YP_003355090.1| - 0.51 9.7 5.0 1.9 7.8 2.1 2.0 1 1 1 2 2 2 0 Gram-negative porin CarboxypepD_reg PF13620.6 gi|282162707|ref|YP_003355092.1| - 3e-05 24.2 1.0 7.5e-05 22.9 1.0 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain SdrD_B PF17210.3 gi|282162707|ref|YP_003355092.1| - 0.0088 16.3 0.1 0.015 15.5 0.1 1.4 1 0 0 1 1 1 1 SdrD B-like domain DUF4366 PF14283.6 gi|282162707|ref|YP_003355092.1| - 0.038 14.0 0.0 0.1 12.6 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) DUF1416 PF07210.12 gi|282162707|ref|YP_003355092.1| - 0.068 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1416) PT PF04886.12 gi|282162707|ref|YP_003355092.1| - 0.92 9.1 14.2 3.1 7.4 14.2 1.9 1 1 0 1 1 1 0 PT repeat DUF4131 PF13567.6 gi|282162707|ref|YP_003355092.1| - 1.6 8.3 4.0 3.2 7.4 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) Thioredoxin PF00085.20 gi|282162709|ref|YP_003355094.1| - 4.4e-28 97.3 0.0 5e-28 97.1 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|282162709|ref|YP_003355094.1| - 1.3e-07 32.0 0.1 1.7e-06 28.4 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|282162709|ref|YP_003355094.1| - 1.7e-05 24.6 0.0 1.8e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|282162709|ref|YP_003355094.1| - 2.5e-05 24.5 0.0 0.00075 19.8 0.0 2.1 1 1 1 2 2 2 1 Thioredoxin-like OST3_OST6 PF04756.13 gi|282162709|ref|YP_003355094.1| - 6e-05 22.5 0.0 6.1e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Redoxin PF08534.10 gi|282162709|ref|YP_003355094.1| - 6.8e-05 22.6 0.0 8.6e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Redoxin TraF PF13728.6 gi|282162709|ref|YP_003355094.1| - 0.00055 19.8 0.0 0.00062 19.7 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|282162709|ref|YP_003355094.1| - 0.0081 16.2 0.0 0.047 13.7 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin domain Thioredoxin_7 PF13899.6 gi|282162709|ref|YP_003355094.1| - 0.035 14.3 0.0 0.056 13.6 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_6 PF13848.6 gi|282162709|ref|YP_003355094.1| - 0.042 13.8 0.0 0.056 13.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain AhpC-TSA PF00578.21 gi|282162709|ref|YP_003355094.1| - 0.075 13.0 0.0 0.15 12.0 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA family TP6A_N PF04406.14 gi|282162710|ref|YP_003355095.1| - 1.2e-11 44.4 0.8 4e-11 42.7 0.8 1.9 1 1 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.11 gi|282162711|ref|YP_003355096.1| - 7.2e-52 175.4 0.0 1.2e-51 174.8 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|282162711|ref|YP_003355096.1| - 2.8e-11 43.9 0.0 2.2e-09 37.8 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|282162711|ref|YP_003355096.1| - 2.1e-07 30.9 0.0 3.8e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RRF PF01765.19 gi|282162711|ref|YP_003355096.1| - 0.035 14.1 0.1 0.085 12.8 0.1 1.6 1 0 0 1 1 1 0 Ribosome recycling factor Glycos_transf_1 PF00534.20 gi|282162712|ref|YP_003355097.1| - 1.3e-36 125.7 0.0 2e-36 125.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282162712|ref|YP_003355097.1| - 2.1e-29 102.7 0.2 1.1e-28 100.3 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282162712|ref|YP_003355097.1| - 8.3e-29 100.8 1.7 1.3e-28 100.1 1.7 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|282162712|ref|YP_003355097.1| - 8.8e-17 62.0 2.1 1.6e-16 61.1 2.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|282162712|ref|YP_003355097.1| - 5.1e-07 29.8 0.0 8.5e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|282162712|ref|YP_003355097.1| - 8.2e-07 29.3 0.0 1.6e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Auto_anti-p27 PF06677.12 gi|282162713|ref|YP_003355098.1| - 7.7e-12 45.2 2.1 1.3e-11 44.4 2.1 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Fer4 PF00037.27 gi|282162714|ref|YP_003355099.1| - 6.2e-10 38.5 14.7 9.2e-05 22.1 5.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282162714|ref|YP_003355099.1| - 6.7e-08 32.3 16.0 0.00041 20.3 3.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282162714|ref|YP_003355099.1| - 8.7e-07 29.0 9.3 8.7e-07 29.0 9.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282162714|ref|YP_003355099.1| - 1e-05 25.6 11.3 1e-05 25.6 11.3 2.7 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282162714|ref|YP_003355099.1| - 2e-05 25.1 9.3 0.00033 21.2 1.1 3.3 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282162714|ref|YP_003355099.1| - 6.9e-05 23.7 0.9 6.9e-05 23.7 0.9 3.2 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|282162714|ref|YP_003355099.1| - 0.0002 21.4 24.4 0.0034 17.5 14.7 3.0 3 1 1 4 4 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282162714|ref|YP_003355099.1| - 0.00079 19.9 4.9 0.019 15.5 0.3 3.7 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282162714|ref|YP_003355099.1| - 0.017 15.2 3.6 0.017 15.2 3.6 3.5 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|282162714|ref|YP_003355099.1| - 0.018 15.5 17.3 0.035 14.6 3.2 3.7 5 0 0 5 5 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|282162714|ref|YP_003355099.1| - 0.071 14.1 5.4 0.071 14.1 5.4 3.4 4 0 0 4 4 2 0 4Fe-4S binding domain DUF3925 PF13063.6 gi|282162714|ref|YP_003355099.1| - 0.18 12.0 0.1 0.36 11.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3925) Fer4_15 PF13459.6 gi|282162714|ref|YP_003355099.1| - 7.3 7.4 13.9 13 6.6 2.7 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|282162714|ref|YP_003355099.1| - 9.6 6.7 29.4 0.21 12.0 2.8 3.4 2 2 1 3 3 2 0 4Fe-4S dicluster domain NOG1_N PF17835.1 gi|282162715|ref|YP_003355100.1| - 1.2e-43 148.8 0.0 1.8e-43 148.3 0.0 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|282162715|ref|YP_003355100.1| - 2.8e-22 78.3 0.0 5.4e-22 77.3 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|282162715|ref|YP_003355100.1| - 4.5e-20 71.8 0.0 8.9e-20 70.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|282162715|ref|YP_003355100.1| - 2.3e-12 46.7 0.1 4.6e-12 45.7 0.0 1.5 2 0 0 2 2 2 1 Ferrous iron transport protein B AIG1 PF04548.16 gi|282162715|ref|YP_003355100.1| - 0.0051 16.2 0.0 0.0072 15.7 0.0 1.2 1 0 0 1 1 1 1 AIG1 family RsgA_GTPase PF03193.16 gi|282162715|ref|YP_003355100.1| - 0.0063 16.4 0.0 0.031 14.2 0.0 2.1 2 1 0 2 2 2 1 RsgA GTPase Dynamin_N PF00350.23 gi|282162715|ref|YP_003355100.1| - 0.009 16.1 0.2 5 7.1 0.0 2.7 2 1 1 3 3 3 2 Dynamin family BrnA_antitoxin PF14384.6 gi|282162717|ref|YP_003355102.1| - 0.014 15.9 0.0 0.051 14.1 0.0 1.9 2 0 0 2 2 2 0 BrnA antitoxin of type II toxin-antitoxin system Peptidase_S24 PF00717.23 gi|282162718|ref|YP_003355103.1| - 0.0014 18.6 0.1 0.0034 17.3 0.1 1.8 1 1 0 1 1 1 1 Peptidase S24-like FMN_red PF03358.15 gi|282162719|ref|YP_003355104.1| - 1.6e-23 83.1 0.0 2.1e-23 82.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|282162719|ref|YP_003355104.1| - 2.6e-05 24.0 0.0 3.7e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold zf-C2H2_11 PF16622.5 gi|282162719|ref|YP_003355104.1| - 0.084 12.6 1.2 0.2 11.4 1.2 1.6 1 0 0 1 1 1 0 zinc-finger C2H2-type Sigma54_CBD PF04963.13 gi|282162721|ref|YP_003355106.1| - 0.12 12.2 0.1 0.16 11.8 0.1 1.1 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain PAS PF00989.25 gi|282162722|ref|YP_003355107.1| - 7e-45 151.7 0.0 1.8e-11 44.0 0.0 4.3 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|282162722|ref|YP_003355107.1| - 5e-36 123.1 0.0 1.5e-13 50.9 0.0 4.9 6 0 0 6 6 6 4 PAS domain PAS_3 PF08447.12 gi|282162722|ref|YP_003355107.1| - 4e-32 110.3 0.0 1.1e-11 44.8 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.10 gi|282162722|ref|YP_003355107.1| - 5.5e-28 97.4 0.0 1.2e-09 38.3 0.0 4.3 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|282162722|ref|YP_003355107.1| - 1.7e-18 66.2 0.0 1.4e-06 28.2 0.0 4.5 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.26 gi|282162722|ref|YP_003355107.1| - 6.6e-14 52.4 0.0 2.1e-13 50.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|282162722|ref|YP_003355107.1| - 6.6e-08 32.7 0.0 0.0012 19.0 0.0 3.7 3 1 1 4 4 4 2 PAS domain PAS_7 PF12860.7 gi|282162722|ref|YP_003355107.1| - 0.00023 21.3 0.1 1.1 9.4 0.0 3.8 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|282162722|ref|YP_003355107.1| - 0.00062 19.7 0.0 0.0021 18.0 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|282162722|ref|YP_003355107.1| - 0.053 13.1 0.0 2.7 7.6 0.0 3.2 4 0 0 4 4 4 0 UPF0242 C-terminal PAS-like domain HATPase_c_5 PF14501.6 gi|282162722|ref|YP_003355107.1| - 0.094 12.6 0.0 0.49 10.3 0.0 2.3 1 1 1 2 2 2 0 GHKL domain SIMPL PF04402.14 gi|282162722|ref|YP_003355107.1| - 0.13 12.7 0.1 0.44 11.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF541) TBCA PF02970.16 gi|282162722|ref|YP_003355107.1| - 9.9 6.6 7.9 8.1 6.8 2.5 3.4 4 0 0 4 4 3 0 Tubulin binding cofactor A TehB PF03848.14 gi|282162723|ref|YP_003355108.1| - 0.15 11.4 0.1 1.8 7.9 0.0 2.1 1 1 1 2 2 2 0 Tellurite resistance protein TehB PAS_3 PF08447.12 gi|282162724|ref|YP_003355109.1| - 1.1e-26 92.9 0.2 1.1e-14 54.4 0.0 3.1 4 0 0 4 4 4 2 PAS fold HATPase_c PF02518.26 gi|282162724|ref|YP_003355109.1| - 6.5e-21 74.9 0.0 1.6e-20 73.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|282162724|ref|YP_003355109.1| - 2.1e-19 69.7 0.1 1.6e-09 38.0 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|282162724|ref|YP_003355109.1| - 1.7e-16 60.2 0.0 1.2e-08 34.9 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|282162724|ref|YP_003355109.1| - 6e-14 52.2 0.0 0.003 17.8 0.0 4.1 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|282162724|ref|YP_003355109.1| - 9.3e-10 38.3 0.0 0.00042 20.3 0.0 3.6 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.6 gi|282162724|ref|YP_003355109.1| - 0.00023 21.1 0.0 0.0005 20.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|282162724|ref|YP_003355109.1| - 0.012 15.2 0.1 2.1 8.0 0.0 2.3 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain HATPase_c_5 PF14501.6 gi|282162724|ref|YP_003355109.1| - 0.027 14.4 0.0 0.093 12.6 0.0 1.9 1 1 0 1 1 1 0 GHKL domain polyprenyl_synt PF00348.17 gi|282162726|ref|YP_003355111.1| - 6.6e-46 156.4 1.8 8.4e-46 156.1 1.8 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase G-alpha PF00503.20 gi|282162726|ref|YP_003355111.1| - 0.026 13.7 0.0 0.039 13.1 0.0 1.4 1 1 0 1 1 1 0 G-protein alpha subunit AAA PF00004.29 gi|282162727|ref|YP_003355112.1| - 6.3e-96 317.8 0.0 3.8e-47 160.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|282162727|ref|YP_003355112.1| - 5.8e-29 99.6 1.0 2.2e-13 49.8 0.1 3.0 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|282162727|ref|YP_003355112.1| - 1.6e-27 95.4 0.7 5.5e-27 93.8 0.7 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.6 gi|282162727|ref|YP_003355112.1| - 2e-15 57.6 0.1 1.7e-06 28.5 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|282162727|ref|YP_003355112.1| - 7.6e-15 54.5 0.0 1.9e-14 53.2 0.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|282162727|ref|YP_003355112.1| - 2.4e-14 53.8 0.0 1.7e-07 31.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|282162727|ref|YP_003355112.1| - 6.3e-14 52.0 0.0 9.2e-06 25.5 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|282162727|ref|YP_003355112.1| - 7.7e-11 42.4 0.5 0.0059 16.9 0.0 4.5 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|282162727|ref|YP_003355112.1| - 1.3e-10 41.1 0.2 0.00071 18.9 0.0 3.1 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_5 PF07728.14 gi|282162727|ref|YP_003355112.1| - 1.3e-10 41.4 0.9 0.00054 20.0 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|282162727|ref|YP_003355112.1| - 1.9e-09 37.8 0.0 0.00032 20.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|282162727|ref|YP_003355112.1| - 6.1e-09 36.5 0.0 0.002 18.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|282162727|ref|YP_003355112.1| - 6.4e-09 35.9 0.0 0.0018 18.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|282162727|ref|YP_003355112.1| - 1.1e-08 35.7 0.0 0.0015 19.1 0.0 2.5 2 0 0 2 2 2 2 ABC transporter IstB_IS21 PF01695.17 gi|282162727|ref|YP_003355112.1| - 1.1e-08 35.0 0.0 0.0059 16.4 0.0 3.0 3 0 0 3 3 3 2 IstB-like ATP binding protein NACHT PF05729.12 gi|282162727|ref|YP_003355112.1| - 8.6e-08 32.3 0.1 0.48 10.3 0.0 4.2 3 1 1 4 4 4 2 NACHT domain AAA_28 PF13521.6 gi|282162727|ref|YP_003355112.1| - 1.7e-07 31.6 0.0 0.017 15.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|282162727|ref|YP_003355112.1| - 2.6e-07 30.5 0.0 0.043 13.5 0.0 3.0 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|282162727|ref|YP_003355112.1| - 5.3e-07 29.6 0.0 0.01 15.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|282162727|ref|YP_003355112.1| - 5.6e-07 29.9 0.0 0.036 14.4 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|282162727|ref|YP_003355112.1| - 1e-06 28.3 0.3 0.026 13.9 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|282162727|ref|YP_003355112.1| - 3.8e-06 26.4 0.0 0.23 10.8 0.0 3.3 3 0 0 3 3 3 2 KaiC AAA_7 PF12775.7 gi|282162727|ref|YP_003355112.1| - 5.4e-06 26.0 0.0 0.076 12.5 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|282162727|ref|YP_003355112.1| - 1.7e-05 24.1 0.0 0.038 13.1 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ATPase_2 PF01637.18 gi|282162727|ref|YP_003355112.1| - 1.7e-05 24.8 0.4 0.62 9.9 0.1 3.6 3 2 0 3 3 2 2 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|282162727|ref|YP_003355112.1| - 3.5e-05 23.2 0.0 0.12 11.6 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|282162727|ref|YP_003355112.1| - 4.2e-05 23.1 0.1 0.34 10.3 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein Zeta_toxin PF06414.12 gi|282162727|ref|YP_003355112.1| - 7.9e-05 22.0 0.1 0.048 12.9 0.0 2.7 2 0 0 2 2 2 1 Zeta toxin AAA_3 PF07726.11 gi|282162727|ref|YP_003355112.1| - 8.1e-05 22.5 0.0 0.84 9.5 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|282162727|ref|YP_003355112.1| - 0.00013 22.1 0.0 0.4 10.8 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NB-ARC PF00931.22 gi|282162727|ref|YP_003355112.1| - 0.00016 21.0 0.0 0.42 9.8 0.0 2.7 2 0 0 2 2 2 2 NB-ARC domain TsaE PF02367.17 gi|282162727|ref|YP_003355112.1| - 0.00019 21.4 0.0 0.33 11.0 0.0 2.6 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Vps4_C PF09336.10 gi|282162727|ref|YP_003355112.1| - 0.00024 21.0 0.1 0.28 11.2 0.0 3.1 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_17 PF13207.6 gi|282162727|ref|YP_003355112.1| - 0.00027 21.4 0.0 0.8 10.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|282162727|ref|YP_003355112.1| - 0.00039 20.3 0.0 0.88 9.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|282162727|ref|YP_003355112.1| - 0.00046 20.0 0.1 1.2 8.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|282162727|ref|YP_003355112.1| - 0.00064 20.1 0.9 1.8 8.9 0.0 2.9 2 1 0 3 3 2 2 AAA domain DUF815 PF05673.13 gi|282162727|ref|YP_003355112.1| - 0.00066 18.9 0.0 0.5 9.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) KAP_NTPase PF07693.14 gi|282162727|ref|YP_003355112.1| - 0.001 18.4 0.1 0.052 12.8 0.0 2.7 2 1 0 2 2 2 1 KAP family P-loop domain Bac_DnaA PF00308.18 gi|282162727|ref|YP_003355112.1| - 0.0018 18.1 0.0 0.7 9.7 0.0 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein Guanylate_kin PF00625.21 gi|282162727|ref|YP_003355112.1| - 0.0021 17.7 0.2 17 5.1 0.0 4.2 2 2 2 4 4 4 0 Guanylate kinase TniB PF05621.11 gi|282162727|ref|YP_003355112.1| - 0.0034 16.8 0.0 7.6 5.9 0.0 3.5 3 1 1 4 4 3 0 Bacterial TniB protein AAA_25 PF13481.6 gi|282162727|ref|YP_003355112.1| - 0.0071 15.9 8.3 1.3 8.6 0.5 4.1 2 2 1 3 3 3 1 AAA domain Viral_helicase1 PF01443.18 gi|282162727|ref|YP_003355112.1| - 0.012 15.3 0.0 4.6 6.9 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ATP-synt_ab PF00006.25 gi|282162727|ref|YP_003355112.1| - 0.017 14.7 0.0 3 7.4 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain MCM PF00493.23 gi|282162727|ref|YP_003355112.1| - 0.019 14.1 0.0 7.4 5.6 0.0 2.8 2 1 0 2 2 2 0 MCM P-loop domain ResIII PF04851.15 gi|282162727|ref|YP_003355112.1| - 0.023 14.7 0.0 2 8.4 0.0 2.5 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit PduV-EutP PF10662.9 gi|282162727|ref|YP_003355112.1| - 0.032 14.0 0.0 12 5.6 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.15 gi|282162727|ref|YP_003355112.1| - 0.035 14.0 1.1 13 5.7 0.0 3.1 2 1 0 2 2 2 0 NTPase AAA_29 PF13555.6 gi|282162727|ref|YP_003355112.1| - 0.039 13.7 0.0 12 5.7 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain SRPRB PF09439.10 gi|282162727|ref|YP_003355112.1| - 0.046 13.2 0.0 5.3 6.4 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AFG1_ATPase PF03969.16 gi|282162727|ref|YP_003355112.1| - 0.057 12.3 0.0 6.5 5.5 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase Roc PF08477.13 gi|282162727|ref|YP_003355112.1| - 0.073 13.3 0.0 12 6.2 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Cytidylate_kin PF02224.18 gi|282162727|ref|YP_003355112.1| - 0.08 12.7 0.1 7.5 6.2 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase Rad17 PF03215.15 gi|282162727|ref|YP_003355112.1| - 0.13 12.1 0.0 13 5.6 0.0 2.8 2 1 0 2 2 2 0 Rad17 P-loop domain Molydop_binding PF01568.21 gi|282162727|ref|YP_003355112.1| - 0.15 12.1 0.1 0.66 10.0 0.1 2.1 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain MMR_HSR1 PF01926.23 gi|282162727|ref|YP_003355112.1| - 0.15 12.2 0.1 36 4.5 0.0 3.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase Glu_dehyd_C PF16912.5 gi|282162728|ref|YP_003355113.1| - 2.4e-55 187.3 0.0 3.1e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|282162728|ref|YP_003355113.1| - 7.7e-18 64.4 0.8 1.3e-17 63.7 0.8 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|282162728|ref|YP_003355113.1| - 4.2e-07 30.0 0.0 8.9e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase FAD_binding_3 PF01494.19 gi|282162728|ref|YP_003355113.1| - 0.015 14.5 0.1 0.023 13.9 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain Shikimate_DH PF01488.20 gi|282162728|ref|YP_003355113.1| - 0.036 14.1 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|282162728|ref|YP_003355113.1| - 0.075 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|282162728|ref|YP_003355113.1| - 0.1 12.8 0.0 0.49 10.7 0.0 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|282162728|ref|YP_003355113.1| - 0.14 11.4 0.0 0.26 10.5 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GDYXXLXY PF14345.6 gi|282162729|ref|YP_003355114.1| - 0.022 14.6 0.2 0.032 14.0 0.2 1.4 1 1 0 1 1 1 0 GDYXXLXY protein Glycos_trans_3N PF02885.17 gi|282162730|ref|YP_003355115.1| - 2.6e-16 59.2 0.1 4.9e-16 58.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.21 gi|282162730|ref|YP_003355115.1| - 5.8e-14 52.3 1.9 4.4e-13 49.4 1.9 2.1 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.13 gi|282162730|ref|YP_003355115.1| - 3.9e-12 45.6 0.2 1.8e-11 43.5 0.1 2.3 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Molydop_binding PF01568.21 gi|282162730|ref|YP_003355115.1| - 1.9e-05 24.7 0.1 3.7e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF2254 PF10011.9 gi|282162730|ref|YP_003355115.1| - 0.0013 17.7 0.0 0.002 17.0 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) HlyD_3 PF13437.6 gi|282162730|ref|YP_003355115.1| - 0.0013 19.4 0.2 0.17 12.6 0.0 3.2 3 0 0 3 3 3 1 HlyD family secretion protein Biotin_lipoyl PF00364.22 gi|282162730|ref|YP_003355115.1| - 0.0027 17.5 3.0 0.34 10.8 0.0 4.3 4 0 0 4 4 4 1 Biotin-requiring enzyme CDC48_N PF02359.18 gi|282162730|ref|YP_003355115.1| - 0.014 15.6 0.5 0.15 12.3 0.1 2.7 3 0 0 3 3 3 0 Cell division protein 48 (CDC48), N-terminal domain DUF3256 PF11644.8 gi|282162730|ref|YP_003355115.1| - 0.072 12.6 0.1 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3256) DUF4947 PF16305.5 gi|282162730|ref|YP_003355115.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4947) Prok-RING_1 PF14446.6 gi|282162731|ref|YP_003355116.1| - 0.00015 21.6 4.5 0.00015 21.6 4.5 2.2 1 1 1 2 2 2 1 Prokaryotic RING finger family 1 C1_1 PF00130.22 gi|282162731|ref|YP_003355116.1| - 0.00058 19.7 9.6 0.02 14.8 11.1 2.0 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_2 PF03107.16 gi|282162731|ref|YP_003355116.1| - 0.0011 19.2 6.4 0.0042 17.4 2.4 2.2 2 0 0 2 2 2 1 C1 domain zf-C3H2C3 PF17122.5 gi|282162731|ref|YP_003355116.1| - 0.014 15.5 4.9 0.86 9.7 6.5 2.5 1 1 1 2 2 2 0 Zinc-finger PHD PF00628.29 gi|282162731|ref|YP_003355116.1| - 0.076 12.9 10.9 0.38 10.7 11.0 2.0 1 1 1 2 2 2 0 PHD-finger Zf_RING PF16744.5 gi|282162731|ref|YP_003355116.1| - 0.25 11.5 8.1 0.52 10.4 8.1 1.6 1 1 0 1 1 1 0 KIAA1045 RING finger DNA_RNApol_7kD PF03604.13 gi|282162731|ref|YP_003355116.1| - 0.26 11.0 0.4 0.26 11.0 0.4 3.0 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|282162731|ref|YP_003355116.1| - 0.26 11.3 8.1 1.5 8.9 8.0 2.0 1 1 1 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|282162731|ref|YP_003355116.1| - 0.35 10.9 7.8 0.53 10.3 7.6 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA A2L_zn_ribbon PF08792.10 gi|282162731|ref|YP_003355116.1| - 0.56 10.0 5.7 4.9 7.0 0.1 2.8 2 1 0 2 2 2 0 A2L zinc ribbon domain ADK_lid PF05191.14 gi|282162731|ref|YP_003355116.1| - 9.6 6.3 9.9 6.8 6.8 0.3 2.7 2 1 0 2 2 2 0 Adenylate kinase, active site lid RHH_8 PF17723.1 gi|282162732|ref|YP_003355117.1| - 0.021 15.0 0.0 0.021 15.0 0.0 1.1 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family PIN PF01850.21 gi|282162733|ref|YP_003355118.1| - 6.6e-07 29.9 0.0 7.9e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|282162733|ref|YP_003355118.1| - 0.019 15.7 0.0 0.024 15.4 0.0 1.4 1 1 0 1 1 1 0 PIN domain RecO_N PF11967.8 gi|282162733|ref|YP_003355118.1| - 0.14 12.2 0.0 0.6 10.1 0.0 2.0 2 0 0 2 2 2 0 Recombination protein O N terminal DEAD PF00270.29 gi|282162734|ref|YP_003355119.1| - 7.8e-23 81.1 0.0 1.8e-22 80.0 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|282162734|ref|YP_003355119.1| - 2.3e-15 56.9 0.0 4.8e-15 55.9 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|282162734|ref|YP_003355119.1| - 5e-09 36.4 0.0 8.9e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|282162734|ref|YP_003355119.1| - 0.0064 15.3 0.0 0.0082 14.9 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Methyltr_RsmF_N PF17125.5 gi|282162734|ref|YP_003355119.1| - 0.069 13.7 0.2 13 6.4 0.0 2.7 2 0 0 2 2 2 0 N-terminal domain of 16S rRNA methyltransferase RsmF HTH_24 PF13412.6 gi|282162736|ref|YP_003355121.1| - 2.7e-11 42.8 0.1 1e-10 41.0 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|282162736|ref|YP_003355121.1| - 9.8e-10 38.2 0.2 3.5e-08 33.2 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|282162736|ref|YP_003355121.1| - 4.7e-07 29.6 0.0 1.2e-06 28.3 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|282162736|ref|YP_003355121.1| - 1e-06 28.6 0.1 1e-05 25.4 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|282162736|ref|YP_003355121.1| - 1.9e-05 24.5 0.2 0.00015 21.6 0.1 2.4 3 0 0 3 3 3 1 HTH domain HTH_27 PF13463.6 gi|282162736|ref|YP_003355121.1| - 2.3e-05 24.8 0.1 0.00049 20.5 0.0 2.7 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|282162736|ref|YP_003355121.1| - 0.00035 20.3 0.0 0.00072 19.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.6 gi|282162736|ref|YP_003355121.1| - 0.00045 20.1 0.0 0.00072 19.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|282162736|ref|YP_003355121.1| - 0.00058 19.7 0.0 0.0018 18.1 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|282162736|ref|YP_003355121.1| - 0.0012 19.2 0.4 0.0039 17.5 0.1 2.0 2 1 0 2 2 2 1 Transcriptional regulator DUF4423 PF14394.6 gi|282162736|ref|YP_003355121.1| - 0.0012 18.6 0.0 0.0041 16.9 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) Mnd1 PF03962.15 gi|282162736|ref|YP_003355121.1| - 0.002 18.4 0.0 0.0045 17.2 0.0 1.5 1 0 0 1 1 1 1 Mnd1 HTH domain HTH_29 PF13551.6 gi|282162736|ref|YP_003355121.1| - 0.0031 17.5 0.0 0.0075 16.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|282162736|ref|YP_003355121.1| - 0.0032 17.6 0.0 0.016 15.4 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_13 PF11972.8 gi|282162736|ref|YP_003355121.1| - 0.004 17.2 0.0 0.011 15.8 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain TrmB PF01978.19 gi|282162736|ref|YP_003355121.1| - 0.0064 16.4 0.0 0.023 14.6 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_3 PF01381.22 gi|282162736|ref|YP_003355121.1| - 0.013 15.6 0.0 0.069 13.2 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix GntR PF00392.21 gi|282162736|ref|YP_003355121.1| - 0.016 14.9 0.1 0.13 11.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|282162736|ref|YP_003355121.1| - 0.016 15.3 0.0 0.069 13.3 0.0 2.2 3 0 0 3 3 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|282162736|ref|YP_003355121.1| - 0.017 14.9 0.0 0.036 13.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Mrr_N PF14338.6 gi|282162736|ref|YP_003355121.1| - 0.017 15.2 0.0 0.1 12.7 0.0 2.1 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_36 PF13730.6 gi|282162736|ref|YP_003355121.1| - 0.024 14.6 0.0 0.065 13.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|282162736|ref|YP_003355121.1| - 0.033 14.2 0.0 0.091 12.8 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|282162736|ref|YP_003355121.1| - 0.04 13.7 0.0 0.092 12.6 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain RuvB_C PF05491.13 gi|282162736|ref|YP_003355121.1| - 0.095 12.6 0.1 0.3 11.0 0.1 1.9 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain Nitro_FeMo-Co PF02579.17 gi|282162736|ref|YP_003355121.1| - 0.097 13.0 1.8 2.5 8.5 0.3 2.5 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor P22_Cro PF14549.6 gi|282162736|ref|YP_003355121.1| - 0.098 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro DUF4364 PF14277.6 gi|282162736|ref|YP_003355121.1| - 0.1 12.3 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Phage_rep_O PF04492.13 gi|282162736|ref|YP_003355121.1| - 0.2 12.2 0.0 0.42 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage replication protein O ArsR PF09824.9 gi|282162737|ref|YP_003355122.1| - 4.5e-65 218.1 0.1 5.1e-65 217.9 0.1 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator SMC_ScpB PF04079.16 gi|282162737|ref|YP_003355122.1| - 0.0014 18.2 0.1 0.0086 15.7 0.0 1.9 1 1 1 2 2 2 1 Segregation and condensation complex subunit ScpB Phage_XkdX PF09693.10 gi|282162737|ref|YP_003355122.1| - 0.059 13.4 0.1 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 Phage uncharacterised protein (Phage_XkdX) Peptidase_C11 PF03415.14 gi|282162737|ref|YP_003355122.1| - 0.12 11.7 0.1 0.29 10.5 0.1 1.7 1 1 0 1 1 1 0 Clostripain family Sua5_yciO_yrdC PF01300.18 gi|282162738|ref|YP_003355123.1| - 1.2e-40 139.0 0.0 1.9e-40 138.2 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination HypF_C PF17788.1 gi|282162738|ref|YP_003355123.1| - 1.1e-25 90.2 0.1 2e-25 89.4 0.1 1.4 1 0 0 1 1 1 1 HypF Kae1-like domain zf-HYPF PF07503.12 gi|282162738|ref|YP_003355123.1| - 3.1e-23 81.2 13.2 3.2e-16 58.8 5.5 2.4 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.18 gi|282162738|ref|YP_003355123.1| - 3.7e-22 78.5 0.0 7.1e-22 77.6 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|282162738|ref|YP_003355123.1| - 1.2e-07 31.7 0.1 3.3e-06 27.0 0.0 2.2 2 0 0 2 2 2 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|282162738|ref|YP_003355123.1| - 0.002 17.9 0.5 0.33 10.6 0.0 2.8 2 2 1 3 3 3 1 Carbamoyltransferase N-terminus BcrAD_BadFG PF01869.20 gi|282162738|ref|YP_003355123.1| - 0.0035 16.9 0.1 0.0066 16.0 0.1 1.3 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family DZR PF12773.7 gi|282162738|ref|YP_003355123.1| - 0.18 11.8 2.6 9.3 6.4 0.1 2.4 2 0 0 2 2 2 0 Double zinc ribbon zf-RING_5 PF14634.6 gi|282162738|ref|YP_003355123.1| - 4 7.5 8.9 2.9 7.9 1.1 2.8 3 0 0 3 3 3 0 zinc-RING finger domain zf-RING_UBOX PF13445.6 gi|282162738|ref|YP_003355123.1| - 5 7.2 5.7 1.9 8.6 0.8 2.4 2 0 0 2 2 2 0 RING-type zinc-finger Bactofilin PF04519.13 gi|282162739|ref|YP_003355124.1| - 5.7e-06 26.5 0.7 1.4e-05 25.3 0.4 1.8 1 1 1 2 2 2 1 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|282162739|ref|YP_003355124.1| - 0.31 10.9 2.2 2.9 7.8 0.1 2.7 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) AhpC-TSA PF00578.21 gi|282162740|ref|YP_003355125.1| - 1e-37 128.8 0.0 1.3e-37 128.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|282162740|ref|YP_003355125.1| - 6.5e-17 61.6 0.0 8e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|282162740|ref|YP_003355125.1| - 1.2e-05 25.0 0.0 4.3e-05 23.3 0.0 1.9 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin SCO1-SenC PF02630.14 gi|282162740|ref|YP_003355125.1| - 0.00022 21.1 0.0 0.00048 20.0 0.0 1.5 1 0 0 1 1 1 1 SCO1/SenC HypA PF01155.19 gi|282162741|ref|YP_003355126.1| - 0.00042 20.3 3.4 0.11 12.5 0.2 2.1 2 0 0 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|282162741|ref|YP_003355126.1| - 0.00078 19.4 4.5 0.25 11.4 0.4 2.3 2 0 0 2 2 2 2 Double zinc ribbon Zn_Tnp_IS91 PF14319.6 gi|282162741|ref|YP_003355126.1| - 0.0093 16.0 1.9 0.3 11.2 0.1 2.2 2 0 0 2 2 2 1 Transposase zinc-binding domain zf-Mss51 PF13824.6 gi|282162741|ref|YP_003355126.1| - 0.041 14.0 1.0 14 5.9 0.0 3.1 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 NMD3 PF04981.13 gi|282162741|ref|YP_003355126.1| - 0.046 13.2 5.7 0.42 10.0 5.7 2.1 1 1 0 1 1 1 0 NMD3 family ADK_lid PF05191.14 gi|282162741|ref|YP_003355126.1| - 0.064 13.2 10.2 0.11 12.5 0.9 2.9 2 2 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_6 PF14599.6 gi|282162741|ref|YP_003355126.1| - 0.2 11.7 5.5 3.9 7.6 1.0 2.4 2 0 0 2 2 2 0 Zinc-ribbon TF_Zn_Ribbon PF08271.12 gi|282162741|ref|YP_003355126.1| - 0.21 11.1 9.1 1.5 8.4 0.6 2.8 2 1 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|282162741|ref|YP_003355126.1| - 0.25 11.5 8.5 0.72 10.0 0.4 3.0 2 1 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|282162741|ref|YP_003355126.1| - 0.26 11.1 13.4 0.8 9.5 0.0 4.1 3 1 0 3 3 3 0 A2L zinc ribbon domain Cytochrome_C7 PF14522.6 gi|282162741|ref|YP_003355126.1| - 0.3 11.1 4.1 4.2 7.4 0.2 2.1 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c FYVE_2 PF02318.16 gi|282162741|ref|YP_003355126.1| - 0.34 11.1 8.2 4 7.7 0.6 2.5 2 1 0 2 2 2 0 FYVE-type zinc finger Zn_ribbon_recom PF13408.6 gi|282162741|ref|YP_003355126.1| - 0.5 10.9 5.3 12 6.5 0.5 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain DUF1451 PF07295.11 gi|282162741|ref|YP_003355126.1| - 0.58 10.2 6.2 2.2 8.3 0.3 2.3 2 1 0 2 2 2 0 Zinc-ribbon containing domain zf-C2H2 PF00096.26 gi|282162741|ref|YP_003355126.1| - 0.72 10.4 0.1 0.72 10.4 0.1 3.2 4 0 0 4 4 3 0 Zinc finger, C2H2 type Prok-RING_2 PF14445.6 gi|282162741|ref|YP_003355126.1| - 0.79 9.9 7.9 5.4 7.3 0.9 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 2 zf_C2H2_13 PF18508.1 gi|282162741|ref|YP_003355126.1| - 0.79 9.4 16.2 1.9 8.2 0.8 4.0 2 2 2 4 4 4 0 Zinc finger domain zf-C2H2_11 PF16622.5 gi|282162741|ref|YP_003355126.1| - 0.88 9.4 8.5 2.8 7.8 0.1 2.6 3 0 0 3 3 2 0 zinc-finger C2H2-type zf-C2H2_3 PF13878.6 gi|282162741|ref|YP_003355126.1| - 1.1 9.2 10.8 2 8.3 0.1 3.0 3 1 1 4 4 4 0 zinc-finger of acetyl-transferase ESCO DUF2256 PF10013.9 gi|282162741|ref|YP_003355126.1| - 1.7 8.8 17.4 0.11 12.6 2.1 3.3 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) C1_1 PF00130.22 gi|282162741|ref|YP_003355126.1| - 3.6 7.5 8.4 5.5 7.0 0.8 2.3 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_4 PF13894.6 gi|282162741|ref|YP_003355126.1| - 4.8 8.3 8.2 10 7.2 0.1 3.2 4 0 0 4 4 2 0 C2H2-type zinc finger Prok-RING_1 PF14446.6 gi|282162741|ref|YP_003355126.1| - 6.9 6.7 9.2 15 5.6 0.5 2.4 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 HD PF01966.22 gi|282162742|ref|YP_003355127.1| - 2.7e-16 59.9 1.2 2.7e-16 59.9 1.2 1.7 2 0 0 2 2 2 1 HD domain Metallophos_2 PF12850.7 gi|282162743|ref|YP_003355128.1| - 1.1e-08 35.4 0.0 2.6e-08 34.3 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|282162743|ref|YP_003355128.1| - 1.9e-08 35.1 0.0 3.3e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.11 gi|282162743|ref|YP_003355128.1| - 0.003 15.9 0.0 0.006 14.9 0.0 1.4 1 1 1 2 2 2 1 Firmicute fructose-1,6-bisphosphatase UBN_AB PF14075.6 gi|282162744|ref|YP_003355129.1| - 0.078 12.7 0.2 0.1 12.3 0.2 1.1 1 0 0 1 1 1 0 Ubinuclein conserved middle domain EamA PF00892.20 gi|282162745|ref|YP_003355130.1| - 1.8e-43 148.0 44.0 5.8e-22 78.3 19.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF1616 PF07760.11 gi|282162745|ref|YP_003355130.1| - 9 5.6 8.7 3.2 7.1 3.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) GRP PF07172.11 gi|282162746|ref|YP_003355131.1| - 0.4 11.4 1.8 13 6.5 1.0 2.1 2 0 0 2 2 2 0 Glycine rich protein family LIME1 PF15332.6 gi|282162746|ref|YP_003355131.1| - 1.7 8.2 5.6 3.8 7.1 5.5 1.6 1 1 0 1 1 1 0 Lck-interacting transmembrane adapter 1 SNARE_assoc PF09335.11 gi|282162748|ref|YP_003355133.1| - 2.9e-23 82.6 7.9 2.9e-23 82.6 7.9 2.1 2 0 0 2 2 2 1 SNARE associated Golgi protein MscS_TM PF12794.7 gi|282162748|ref|YP_003355133.1| - 0.11 11.4 3.9 0.2 10.5 3.9 1.4 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 FtsX PF02687.21 gi|282162748|ref|YP_003355133.1| - 2.9 8.4 14.8 0.97 9.9 0.5 2.6 1 1 1 2 2 2 0 FtsX-like permease family DUF362 PF04015.12 gi|282162749|ref|YP_003355134.1| - 6.1e-37 127.8 0.0 7.7e-37 127.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) TAT_signal PF10518.9 gi|282162749|ref|YP_003355134.1| - 5.4e-06 26.0 6.0 5.4e-06 26.0 6.0 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence CobT_C PF11775.8 gi|282162749|ref|YP_003355134.1| - 0.081 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT VWA domain Fer4 PF00037.27 gi|282162750|ref|YP_003355135.1| - 3.9e-23 80.3 67.0 7.7e-06 25.5 2.4 8.5 9 0 0 9 9 9 6 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282162750|ref|YP_003355135.1| - 5.7e-19 68.5 47.7 5.8e-07 30.0 6.9 5.5 4 2 3 7 7 7 6 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282162750|ref|YP_003355135.1| - 7.4e-16 57.5 66.1 2.3e-05 24.3 2.7 7.5 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282162750|ref|YP_003355135.1| - 3.3e-15 56.0 50.3 9.2e-06 25.7 8.1 4.9 3 2 4 7 7 7 6 4Fe-4S dicluster domain Fer4_5 PF12801.7 gi|282162750|ref|YP_003355135.1| - 2.8e-14 52.8 25.4 4.4e-10 39.4 6.6 4.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|282162750|ref|YP_003355135.1| - 5.2e-14 52.9 53.2 0.0019 19.1 2.5 6.9 5 1 3 8 8 8 6 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|282162750|ref|YP_003355135.1| - 2.7e-13 49.8 48.1 1.6e-05 24.9 9.6 4.9 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282162750|ref|YP_003355135.1| - 2e-11 43.8 60.7 0.00044 20.3 16.5 6.1 3 2 4 7 7 7 6 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282162750|ref|YP_003355135.1| - 9.4e-10 38.0 72.4 0.0019 18.2 3.7 7.2 8 0 0 8 8 7 6 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282162750|ref|YP_003355135.1| - 1.1e-06 28.9 48.8 0.12 12.9 0.7 5.5 2 1 5 7 7 7 7 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282162750|ref|YP_003355135.1| - 0.00013 22.5 51.9 0.43 11.2 4.3 5.9 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282162750|ref|YP_003355135.1| - 0.0018 18.6 69.6 0.014 15.9 4.4 7.2 8 0 0 8 8 8 4 4Fe-4S binding domain Fer4_18 PF13746.6 gi|282162750|ref|YP_003355135.1| - 0.0026 18.0 4.6 0.0026 18.0 4.6 5.0 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|282162750|ref|YP_003355135.1| - 0.12 13.4 75.7 0.57 11.2 3.5 7.9 8 0 0 8 8 8 0 4Fe-4S binding domain HHH_8 PF14716.6 gi|282162751|ref|YP_003355136.1| - 2e-20 72.9 5.5 9.6e-19 67.5 1.7 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|282162751|ref|YP_003355136.1| - 4.2e-12 46.5 2.1 5.5e-10 39.7 0.1 3.0 2 1 2 4 4 4 1 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.6 gi|282162751|ref|YP_003355136.1| - 2.3e-11 43.7 0.1 7.5e-11 42.0 0.1 2.0 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH PF00633.23 gi|282162751|ref|YP_003355136.1| - 4e-07 29.6 0.9 0.00029 20.5 0.0 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif PHP PF02811.19 gi|282162751|ref|YP_003355136.1| - 4.7e-06 27.0 0.0 9.5e-06 26.0 0.0 1.5 1 1 0 1 1 1 1 PHP domain IMS_HHH PF11798.8 gi|282162751|ref|YP_003355136.1| - 5.2e-06 26.5 1.4 0.76 10.2 0.0 3.6 3 0 0 3 3 3 3 IMS family HHH motif Cdd1 PF11731.8 gi|282162751|ref|YP_003355136.1| - 0.0035 17.5 0.0 2.4 8.5 0.0 2.8 2 1 1 3 3 3 2 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|282162751|ref|YP_003355136.1| - 0.043 13.6 0.0 0.27 11.1 0.0 2.3 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda 5_3_exonuc PF01367.20 gi|282162751|ref|YP_003355136.1| - 0.097 13.3 0.0 0.33 11.6 0.0 2.0 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold LigT_PEase PF02834.16 gi|282162752|ref|YP_003355137.1| - 3.4e-28 97.7 0.0 7.9e-14 51.6 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|282162752|ref|YP_003355137.1| - 4.8e-11 42.8 0.0 5.9e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|282162752|ref|YP_003355137.1| - 9.7e-08 32.2 0.0 1.3e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain AAA_25 PF13481.6 gi|282162752|ref|YP_003355137.1| - 0.009 15.6 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain tRNA_NucTransf2 PF09249.11 gi|282162753|ref|YP_003355138.1| - 7.1e-44 148.7 0.0 1.3e-43 147.8 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|282162753|ref|YP_003355138.1| - 2.6e-13 50.1 0.0 5.2e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|282162753|ref|YP_003355138.1| - 1.2e-05 25.5 0.0 2.7e-05 24.4 0.0 1.6 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain KGK PF08872.10 gi|282162753|ref|YP_003355138.1| - 0.18 12.3 0.0 0.35 11.4 0.0 1.4 1 0 0 1 1 1 0 KGK domain Hist_deacetyl PF00850.19 gi|282162754|ref|YP_003355139.1| - 6e-79 265.7 0.1 3.3e-78 263.3 0.1 1.8 1 1 0 1 1 1 1 Histone deacetylase domain TrmB PF01978.19 gi|282162755|ref|YP_003355140.1| - 0.00034 20.5 0.1 0.00057 19.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB SMC_ScpB PF04079.16 gi|282162755|ref|YP_003355140.1| - 0.0014 18.2 0.1 0.0024 17.5 0.1 1.4 1 1 0 1 1 1 1 Segregation and condensation complex subunit ScpB MarR_2 PF12802.7 gi|282162755|ref|YP_003355140.1| - 0.029 14.2 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 MarR family PadR PF03551.14 gi|282162755|ref|YP_003355140.1| - 0.044 13.7 0.0 0.096 12.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family NTP_transf_2 PF01909.23 gi|282162756|ref|YP_003355141.1| - 8.6e-07 29.2 0.1 1.5e-06 28.4 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|282162756|ref|YP_003355141.1| - 5.1e-05 23.3 0.0 8.6e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase CutA1 PF03091.15 gi|282162757|ref|YP_003355142.1| - 6.4e-32 109.3 0.1 7.2e-32 109.2 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DUF4873 PF16170.5 gi|282162757|ref|YP_003355142.1| - 0.074 13.3 0.0 0.091 13.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4873) Peptidase_M50 PF02163.22 gi|282162758|ref|YP_003355143.1| - 2.7e-24 85.8 0.3 6.8e-24 84.5 0.3 1.6 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|282162758|ref|YP_003355143.1| - 5.7e-11 42.6 0.4 8.4e-06 26.0 0.1 2.4 1 1 1 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|282162758|ref|YP_003355143.1| - 6.4e-11 41.9 0.1 5.9e-05 22.8 0.0 2.4 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.24 gi|282162758|ref|YP_003355143.1| - 0.00011 22.5 0.9 0.058 13.7 0.2 2.3 1 1 1 2 2 2 2 PDZ domain Radical_SAM PF04055.21 gi|282162760|ref|YP_003355145.1| - 1.4e-18 67.9 0.0 3e-18 66.7 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|282162760|ref|YP_003355145.1| - 1.1e-08 35.2 0.0 1.9e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain TrmB PF01978.19 gi|282162761|ref|YP_003355146.1| - 0.0046 16.8 0.1 0.0069 16.2 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_17 PF12728.7 gi|282162761|ref|YP_003355146.1| - 0.0053 16.9 0.1 0.011 15.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|282162761|ref|YP_003355146.1| - 0.06 13.2 0.0 0.083 12.8 0.0 1.2 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.16 gi|282162761|ref|YP_003355146.1| - 0.093 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_37 PF13744.6 gi|282162761|ref|YP_003355146.1| - 0.19 11.7 0.0 0.34 10.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Chordopox_A13L PF05961.11 gi|282162762|ref|YP_003355147.1| - 0.077 13.2 0.5 0.14 12.4 0.5 1.5 1 0 0 1 1 1 0 Chordopoxvirus A13L protein N_BRCA1_IG PF16158.5 gi|282162763|ref|YP_003355148.1| - 2.1e-09 38.0 0.0 0.00016 22.3 0.0 2.5 2 0 0 2 2 2 2 Ig-like domain from next to BRCA1 gene Big_7 PF17957.1 gi|282162763|ref|YP_003355148.1| - 0.00043 21.0 7.3 0.0037 18.0 0.0 4.5 4 2 0 4 4 4 1 Bacterial Ig domain DUF11 PF01345.18 gi|282162763|ref|YP_003355148.1| - 0.002 18.4 6.6 0.015 15.6 2.2 3.0 2 1 0 2 2 2 1 Domain of unknown function DUF11 CARDB PF07705.11 gi|282162763|ref|YP_003355148.1| - 0.0035 17.6 0.0 0.035 14.4 0.0 2.4 2 1 0 2 2 2 1 CARDB DUF4832 PF16116.5 gi|282162763|ref|YP_003355148.1| - 0.0035 17.2 0.0 0.015 15.2 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4832) BiPBP_C PF06832.12 gi|282162763|ref|YP_003355148.1| - 0.16 12.0 0.0 0.74 9.9 0.0 2.1 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family DEC-1_N PF04625.13 gi|282162763|ref|YP_003355148.1| - 0.2 10.6 2.4 0.29 10.1 2.4 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region PPC PF04151.15 gi|282162763|ref|YP_003355148.1| - 1.2 10.3 7.1 3.3 8.9 0.6 3.1 3 0 0 3 3 3 0 Bacterial pre-peptidase C-terminal domain PA14 PF07691.12 gi|282162764|ref|YP_003355149.1| - 3.3e-10 40.0 0.0 4.5e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 PA14 domain GLEYA PF10528.9 gi|282162764|ref|YP_003355149.1| - 0.00077 19.8 0.1 0.0037 17.6 0.1 2.1 1 1 0 1 1 1 1 GLEYA domain Arch_flagellin PF01917.16 gi|282162764|ref|YP_003355149.1| - 0.37 11.0 3.5 0.82 9.8 3.0 1.7 2 0 0 2 2 2 0 Archaebacterial flagellin Pilin_N PF07790.11 gi|282162765|ref|YP_003355150.1| - 4.9e-07 30.6 2.0 5.5e-07 30.4 0.7 1.8 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal DUF2518 PF10726.9 gi|282162765|ref|YP_003355150.1| - 0.007 16.0 0.2 0.0089 15.7 0.2 1.2 1 0 0 1 1 1 1 Protein of function (DUF2518) ChlamPMP_M PF07548.11 gi|282162765|ref|YP_003355150.1| - 0.032 14.2 1.6 0.042 13.8 1.6 1.2 1 0 0 1 1 1 0 Chlamydia polymorphic membrane protein middle domain Flp1_like PF16982.5 gi|282162765|ref|YP_003355150.1| - 0.051 13.0 1.5 0.099 12.1 1.5 1.5 1 0 0 1 1 1 0 Putative Flagellin, Flp1-like, domain Flavodoxin_5 PF12724.7 gi|282162766|ref|YP_003355151.1| - 6.4e-17 62.1 0.0 8.6e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.15 gi|282162766|ref|YP_003355151.1| - 4.9e-06 26.4 0.1 0.00014 21.6 0.0 2.4 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.25 gi|282162766|ref|YP_003355151.1| - 2.1e-05 24.8 0.0 3.6e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|282162766|ref|YP_003355151.1| - 0.00038 20.2 0.0 0.00048 19.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain dCMP_cyt_deam_1 PF00383.23 gi|282162767|ref|YP_003355152.1| - 3.9e-29 100.5 4.6 5.9e-29 99.9 4.6 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|282162767|ref|YP_003355152.1| - 2.9e-19 69.2 0.7 3.8e-19 68.8 0.7 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|282162767|ref|YP_003355152.1| - 0.021 14.9 1.5 0.046 13.8 1.5 1.6 1 1 0 1 1 1 0 Bd3614-like deaminase Methyltr_RsmB-F PF01189.17 gi|282162767|ref|YP_003355152.1| - 0.082 12.5 0.5 0.12 12.0 0.5 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F APOBEC_N PF08210.11 gi|282162767|ref|YP_003355152.1| - 0.2 11.5 3.5 0.52 10.2 3.5 1.7 1 1 0 1 1 1 0 APOBEC-like N-terminal domain DS PF01916.17 gi|282162768|ref|YP_003355153.1| - 4.7e-99 331.3 0.1 5.4e-99 331.1 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase NRD1_2 PF01995.16 gi|282162769|ref|YP_003355154.1| - 4.6e-98 327.2 0.3 5.2e-98 327.1 0.3 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 DUF4974 PF16344.5 gi|282162769|ref|YP_003355154.1| - 0.044 13.8 0.5 0.14 12.2 0.5 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4974) Fe-S_biosyn PF01521.20 gi|282162771|ref|YP_003355156.1| - 3.1e-09 37.0 0.1 3.4e-09 36.9 0.1 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis HGD-D PF06050.13 gi|282162771|ref|YP_003355156.1| - 0.11 12.3 0.0 0.11 12.2 0.0 1.0 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component Regulator_TrmB PF11495.8 gi|282162772|ref|YP_003355157.1| - 6.4e-06 25.5 0.1 1.2e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|282162772|ref|YP_003355157.1| - 1.5e-05 24.8 0.3 2.9e-05 23.8 0.3 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PLDc_2 PF13091.6 gi|282162772|ref|YP_003355157.1| - 0.0011 18.8 0.0 0.0025 17.7 0.0 1.5 1 0 0 1 1 1 1 PLD-like domain HTH_20 PF12840.7 gi|282162772|ref|YP_003355157.1| - 0.027 14.5 0.1 0.13 12.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain PLDc_3 PF13918.6 gi|282162772|ref|YP_003355157.1| - 0.17 11.5 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 PLD-like domain NTP_transferase PF00483.23 gi|282162773|ref|YP_003355158.1| - 4.2e-48 164.1 0.0 5.1e-48 163.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|282162773|ref|YP_003355158.1| - 2.8e-21 74.4 20.2 9.8e-08 31.4 1.2 5.2 1 1 4 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|282162773|ref|YP_003355158.1| - 4.2e-11 42.4 22.4 0.00063 19.5 3.6 5.7 2 1 4 6 6 6 5 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.7 gi|282162773|ref|YP_003355158.1| - 1.4e-10 41.8 0.0 2.3e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.12 gi|282162773|ref|YP_003355158.1| - 0.041 12.8 0.5 0.088 11.7 0.3 1.5 1 1 0 1 1 1 0 L-fucokinase DUF4954 PF16314.5 gi|282162773|ref|YP_003355158.1| - 0.21 9.7 1.4 0.29 9.2 1.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) ATPase PF06745.13 gi|282162774|ref|YP_003355159.1| - 3.5e-14 52.7 0.0 4.4e-12 45.8 0.0 2.3 2 0 0 2 2 2 1 KaiC Robl_LC7 PF03259.17 gi|282162774|ref|YP_003355159.1| - 4.7e-13 48.7 2.4 1.4e-12 47.2 1.1 2.4 3 0 0 3 3 3 1 Roadblock/LC7 domain Arf PF00025.21 gi|282162774|ref|YP_003355159.1| - 4.8e-09 35.9 0.0 7.9e-09 35.2 0.0 1.2 1 0 0 1 1 1 1 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|282162774|ref|YP_003355159.1| - 3e-08 33.4 0.1 7.7e-08 32.1 0.1 1.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|282162774|ref|YP_003355159.1| - 1.4e-06 28.3 0.0 2.8e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Roc PF08477.13 gi|282162774|ref|YP_003355159.1| - 0.001 19.3 0.0 0.0018 18.5 0.0 1.4 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|282162774|ref|YP_003355159.1| - 0.002 17.6 0.0 0.0043 16.5 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AAA_29 PF13555.6 gi|282162774|ref|YP_003355159.1| - 0.0021 17.7 0.2 0.0075 16.0 0.2 1.9 1 1 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|282162774|ref|YP_003355159.1| - 0.0033 17.8 0.2 0.0071 16.7 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain ATP_bind_1 PF03029.17 gi|282162774|ref|YP_003355159.1| - 0.0061 16.4 0.5 0.7 9.6 0.3 2.2 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|282162774|ref|YP_003355159.1| - 0.0063 16.7 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain Ras PF00071.22 gi|282162774|ref|YP_003355159.1| - 0.015 14.9 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 Ras family AAA_22 PF13401.6 gi|282162774|ref|YP_003355159.1| - 0.02 15.2 0.0 0.039 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|282162774|ref|YP_003355159.1| - 0.021 14.7 0.3 0.067 13.1 0.2 1.9 2 0 0 2 2 2 0 NTPase AAA PF00004.29 gi|282162774|ref|YP_003355159.1| - 0.046 14.1 0.2 0.15 12.4 0.2 2.0 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) TraW_N PF12477.8 gi|282162774|ref|YP_003355159.1| - 0.057 13.4 0.2 0.12 12.4 0.2 1.5 1 0 0 1 1 1 0 Sex factor F TraW protein N terminal MutS_V PF00488.21 gi|282162774|ref|YP_003355159.1| - 0.068 13.2 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 MutS domain V AAA_24 PF13479.6 gi|282162774|ref|YP_003355159.1| - 0.084 12.6 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|282162774|ref|YP_003355159.1| - 0.087 12.7 0.7 2 8.3 0.0 2.2 1 1 1 2 2 2 0 RsgA GTPase FtsK_SpoIIIE PF01580.18 gi|282162774|ref|YP_003355159.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family PAXNEB PF05625.11 gi|282162774|ref|YP_003355159.1| - 0.17 11.0 0.0 0.24 10.5 0.0 1.1 1 0 0 1 1 1 0 PAXNEB protein DUF835 PF05763.12 gi|282162775|ref|YP_003355160.1| - 0.0014 18.4 0.0 0.0023 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) ATPase PF06745.13 gi|282162775|ref|YP_003355160.1| - 0.0019 17.6 0.0 0.0098 15.3 0.0 1.9 1 1 0 1 1 1 1 KaiC AMMECR1 PF01871.17 gi|282162776|ref|YP_003355161.1| - 1e-51 174.9 0.0 1.2e-51 174.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 PhoU_div PF01865.16 gi|282162777|ref|YP_003355162.1| - 1e-44 152.5 4.3 1.1e-44 152.3 4.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 VCH_CASS14 PF18315.1 gi|282162777|ref|YP_003355162.1| - 0.03 14.4 2.1 0.39 10.8 0.0 2.9 2 2 2 4 4 4 0 Integron cassette protein VCH_CASS1 chain DUF3799 PF12684.7 gi|282162777|ref|YP_003355162.1| - 0.071 12.9 0.4 0.11 12.3 0.4 1.3 1 1 0 1 1 1 0 PDDEXK-like domain of unknown function (DUF3799) PHO4 PF01384.20 gi|282162778|ref|YP_003355163.1| - 2.3e-86 289.9 39.9 9.3e-86 287.9 39.9 1.8 1 1 0 1 1 1 1 Phosphate transporter family TraQ PF09679.10 gi|282162778|ref|YP_003355163.1| - 0.0071 16.2 3.6 0.23 11.4 0.0 3.3 3 0 0 3 3 3 1 Type-F conjugative transfer system pilin chaperone (TraQ) Myc_target_1 PF15179.6 gi|282162778|ref|YP_003355163.1| - 0.12 12.3 5.0 1.6 8.6 0.3 2.3 2 0 0 2 2 2 0 Myc target protein 1 PetG PF02529.15 gi|282162778|ref|YP_003355163.1| - 0.92 9.4 6.0 0.89 9.5 2.6 2.7 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 Orf78 PF06024.12 gi|282162778|ref|YP_003355163.1| - 4.1 7.7 4.2 29 5.0 0.2 2.6 2 0 0 2 2 2 0 Orf78 (ac78) Amidohydro_1 PF01979.20 gi|282162779|ref|YP_003355164.1| - 1.8e-28 99.8 0.0 3.6e-28 98.9 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|282162779|ref|YP_003355164.1| - 2.9e-15 56.7 2.3 1.1e-08 35.1 0.6 2.4 2 1 0 2 2 2 2 Amidohydrolase family Cation_efflux PF01545.21 gi|282162780|ref|YP_003355165.1| - 5e-43 147.2 13.0 6.3e-43 146.8 13.0 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|282162780|ref|YP_003355165.1| - 2.8e-24 85.0 0.0 5.5e-24 84.1 0.0 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Gram_pos_anchor PF00746.21 gi|282162780|ref|YP_003355165.1| - 0.19 11.7 0.1 0.19 11.7 0.1 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DUF4149 PF13664.6 gi|282162780|ref|YP_003355165.1| - 0.2 12.0 1.5 0.32 11.4 0.3 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4149) SLATT_1 PF18181.1 gi|282162780|ref|YP_003355165.1| - 3 7.8 9.6 0.48 10.4 0.1 2.8 2 1 1 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 1 DUF167 PF02594.16 gi|282162781|ref|YP_003355166.1| - 3.7e-22 78.2 0.0 4.8e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Peptidase_M15_3 PF08291.11 gi|282162781|ref|YP_003355166.1| - 0.011 15.7 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase M15 Toprim PF01751.22 gi|282162782|ref|YP_003355167.1| - 6.2e-05 23.2 0.0 0.00021 21.5 0.0 1.8 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|282162782|ref|YP_003355167.1| - 0.00028 21.2 0.0 0.00037 20.9 0.0 1.2 1 0 0 1 1 1 1 Toprim-like Toprim_4 PF13662.6 gi|282162782|ref|YP_003355167.1| - 0.0003 21.2 0.0 0.00061 20.2 0.0 1.6 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|282162783|ref|YP_003355168.1| - 1.6e-13 50.9 0.4 3.6e-13 49.8 0.4 1.6 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|282162783|ref|YP_003355168.1| - 5.5e-07 29.9 0.0 1.7e-06 28.4 0.0 1.9 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|282162783|ref|YP_003355168.1| - 5.4e-05 23.4 0.7 0.00031 20.9 0.1 2.5 2 1 0 2 2 2 1 Toprim domain Acetyltransf_1 PF00583.25 gi|282162784|ref|YP_003355169.1| - 7e-17 61.7 0.0 1e-16 61.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|282162784|ref|YP_003355169.1| - 3.4e-14 52.9 0.0 4e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|282162784|ref|YP_003355169.1| - 2.4e-12 47.1 0.0 3.6e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|282162784|ref|YP_003355169.1| - 1e-08 35.0 0.1 1.5e-08 34.5 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|282162784|ref|YP_003355169.1| - 0.0041 17.3 0.0 0.0055 16.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.6 gi|282162784|ref|YP_003355169.1| - 0.021 14.2 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Acetyltransf_18 PF18014.1 gi|282162784|ref|YP_003355169.1| - 0.03 14.2 0.0 0.06 13.2 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain UPF0146 PF03686.13 gi|282162785|ref|YP_003355170.1| - 1.2e-35 122.2 0.0 1.3e-35 122.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) CHAT PF12770.7 gi|282162786|ref|YP_003355171.1| - 0.0061 16.0 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 CHAT domain DUF4191 PF13829.6 gi|282162787|ref|YP_003355172.1| - 0.17 11.2 2.9 0.2 10.9 2.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Herpes_LMP1 PF05297.11 gi|282162787|ref|YP_003355172.1| - 4.1 6.5 9.0 5.4 6.1 9.0 1.3 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF2070 PF09843.9 gi|282162787|ref|YP_003355172.1| - 9.6 4.4 13.2 12 4.0 13.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) GatB_N PF02934.15 gi|282162788|ref|YP_003355173.1| - 6.4e-65 219.2 0.0 8.5e-65 218.8 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|282162788|ref|YP_003355173.1| - 1.1e-20 74.0 0.1 2.2e-20 73.0 0.1 1.5 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|282162788|ref|YP_003355173.1| - 1e-15 57.7 0.6 2.7e-15 56.4 0.0 2.0 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|282162788|ref|YP_003355173.1| - 0.00037 20.6 0.5 0.0011 19.0 0.3 1.9 1 1 0 1 1 1 1 Yqey-like protein DUF826 PF05696.11 gi|282162788|ref|YP_003355173.1| - 0.21 11.7 5.5 0.51 10.4 2.6 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF826) Asparaginase PF00710.20 gi|282162789|ref|YP_003355174.1| - 2.8e-59 199.9 0.6 3.9e-58 196.2 0.8 2.0 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|282162789|ref|YP_003355174.1| - 1e-33 115.9 0.0 5.5e-33 113.6 0.0 2.1 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|282162789|ref|YP_003355174.1| - 1.8e-16 59.2 0.4 4.4e-16 57.9 0.2 1.8 2 0 0 2 2 2 1 GatD N-terminal domain Peripla_BP_4 PF13407.6 gi|282162789|ref|YP_003355174.1| - 0.026 14.1 0.0 0.23 11.0 0.0 2.1 2 0 0 2 2 2 0 Periplasmic binding protein domain Lyase_1 PF00206.20 gi|282162790|ref|YP_003355175.1| - 5.5e-63 213.2 0.3 1.8e-62 211.5 0.0 1.8 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.6 gi|282162790|ref|YP_003355175.1| - 1.4e-13 51.4 0.1 1.4e-12 48.1 0.0 2.8 3 0 0 3 3 3 1 Argininosuccinate lyase C-terminal Radical_SAM PF04055.21 gi|282162791|ref|YP_003355176.1| - 4.7e-25 88.9 0.0 1.5e-24 87.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|282162791|ref|YP_003355176.1| - 2.8e-06 27.4 0.0 5.1e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|282162791|ref|YP_003355176.1| - 0.014 15.7 0.0 0.024 14.9 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain APH PF01636.23 gi|282162792|ref|YP_003355177.1| - 2.7e-08 34.1 0.0 0.0013 18.7 0.0 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.22 gi|282162792|ref|YP_003355177.1| - 5.1e-06 26.2 0.1 5.6e-05 22.8 0.0 2.2 2 0 0 2 2 2 1 RIO1 family Pkinase PF00069.25 gi|282162792|ref|YP_003355177.1| - 0.0006 19.2 0.9 0.0015 17.9 0.1 1.9 2 0 0 2 2 2 1 Protein kinase domain WaaY PF06176.11 gi|282162792|ref|YP_003355177.1| - 0.0032 17.1 1.2 0.0074 15.9 0.0 2.2 3 0 0 3 3 3 1 Lipopolysaccharide core biosynthesis protein (WaaY) APH_6_hur PF04655.14 gi|282162792|ref|YP_003355177.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase PIN_4 PF13638.6 gi|282162794|ref|YP_003355179.1| - 0.065 13.5 0.0 0.07 13.4 0.0 1.0 1 0 0 1 1 1 0 PIN domain AIRC PF00731.20 gi|282162795|ref|YP_003355180.1| - 6.3e-46 155.6 1.8 7e-46 155.5 1.8 1.0 1 0 0 1 1 1 1 AIR carboxylase DUF2157 PF09925.9 gi|282162796|ref|YP_003355181.1| - 0.0075 16.1 2.5 0.009 15.8 2.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2157) DUF2198 PF09964.9 gi|282162796|ref|YP_003355181.1| - 0.053 13.6 4.8 0.067 13.3 4.8 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2198) DUF1129 PF06570.11 gi|282162796|ref|YP_003355181.1| - 0.077 12.5 1.9 0.082 12.4 1.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Wzy_C PF04932.15 gi|282162796|ref|YP_003355181.1| - 0.11 12.1 1.7 0.11 12.1 1.7 1.1 1 0 0 1 1 1 0 O-Antigen ligase UPF0139 PF03669.13 gi|282162796|ref|YP_003355181.1| - 0.21 11.5 1.6 0.56 10.1 0.0 2.0 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0139) DUF4872 PF16169.5 gi|282162798|ref|YP_003355183.1| - 9.8e-43 145.9 0.0 1.4e-42 145.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4872) BtrH_N PF14399.6 gi|282162798|ref|YP_003355183.1| - 8.9e-41 139.3 0.0 1.3e-40 138.8 0.0 1.2 1 0 0 1 1 1 1 Butirosin biosynthesis protein H, N-terminal Peptidase_C39_2 PF13529.6 gi|282162798|ref|YP_003355183.1| - 0.015 15.9 0.0 0.073 13.6 0.0 2.0 2 0 0 2 2 2 0 Peptidase_C39 like family DEAD_assoc PF08494.11 gi|282162799|ref|YP_003355184.1| - 1.6e-35 122.6 0.1 3.4e-35 121.6 0.1 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|282162799|ref|YP_003355184.1| - 9.1e-35 120.0 0.0 1.3e-33 116.2 0.0 2.6 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|282162799|ref|YP_003355184.1| - 2.7e-22 79.2 0.1 8.8e-21 74.3 0.1 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|282162799|ref|YP_003355184.1| - 6.3e-12 45.8 0.0 1.3e-11 44.8 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|282162799|ref|YP_003355184.1| - 7e-05 23.2 0.5 0.0013 19.1 0.0 2.8 3 1 0 3 3 3 1 AAA domain SNF2_N PF00176.23 gi|282162799|ref|YP_003355184.1| - 0.00039 19.3 0.0 0.0012 17.6 0.0 1.7 2 0 0 2 2 2 1 SNF2 family N-terminal domain PhoH PF02562.16 gi|282162799|ref|YP_003355184.1| - 0.0014 18.1 0.0 0.004 16.6 0.0 1.8 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.6 gi|282162799|ref|YP_003355184.1| - 0.0041 16.8 0.0 0.021 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain UvrD-helicase PF00580.21 gi|282162799|ref|YP_003355184.1| - 0.025 14.1 0.0 0.047 13.2 0.0 1.5 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain SecA_DEAD PF07517.14 gi|282162799|ref|YP_003355184.1| - 0.043 13.1 0.0 0.07 12.4 0.0 1.3 1 0 0 1 1 1 0 SecA DEAD-like domain DLIC PF05783.11 gi|282162799|ref|YP_003355184.1| - 0.068 12.0 0.0 0.29 9.9 0.0 1.8 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) Zn-ribbon_8 PF09723.10 gi|282162799|ref|YP_003355184.1| - 0.13 12.5 0.6 0.27 11.4 0.6 1.5 1 0 0 1 1 1 0 Zinc ribbon domain AAA_11 PF13086.6 gi|282162799|ref|YP_003355184.1| - 0.16 11.7 0.0 0.5 10.1 0.0 1.8 1 1 1 2 2 2 0 AAA domain Rad50_zn_hook PF04423.14 gi|282162799|ref|YP_003355184.1| - 0.17 11.8 0.2 4.5 7.2 0.1 2.5 2 0 0 2 2 2 0 Rad50 zinc hook motif AAA_22 PF13401.6 gi|282162799|ref|YP_003355184.1| - 0.18 12.0 0.5 2.9 8.2 0.5 2.7 1 1 0 1 1 1 0 AAA domain TBP PF00352.21 gi|282162800|ref|YP_003355185.1| - 1.5e-58 194.7 0.0 4.6e-28 97.0 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|282162800|ref|YP_003355185.1| - 6.5e-07 29.4 0.0 0.031 14.4 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) T4bSS_IcmS PF12608.8 gi|282162800|ref|YP_003355185.1| - 0.0053 17.0 0.0 0.15 12.4 0.0 2.2 1 1 1 2 2 2 1 Type IVb secretion, IcmS, effector-recruitment DUF218 PF02698.17 gi|282162800|ref|YP_003355185.1| - 0.17 11.9 0.0 22 5.1 0.0 2.7 1 1 2 3 3 3 0 DUF218 domain MarC PF01914.17 gi|282162801|ref|YP_003355186.1| - 7.6e-58 195.2 11.4 8.6e-58 195.1 11.4 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein HcyBio PF01837.16 gi|282162802|ref|YP_003355187.1| - 1.4e-146 487.8 1.6 1.8e-146 487.5 1.6 1.1 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|282162802|ref|YP_003355187.1| - 6.3e-24 84.2 1.8 6.2e-11 42.6 0.1 3.0 3 0 0 3 3 3 2 CBS domain Fer4_7 PF12838.7 gi|282162803|ref|YP_003355188.1| - 2.9e-17 63.0 41.1 7e-10 39.4 16.3 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282162803|ref|YP_003355188.1| - 4e-16 58.1 17.9 5.5e-09 35.5 6.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282162803|ref|YP_003355188.1| - 2.2e-14 52.8 17.2 1.5e-07 31.1 5.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282162803|ref|YP_003355188.1| - 8.3e-12 45.1 7.8 5.5e-06 26.5 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282162803|ref|YP_003355188.1| - 5.4e-11 42.5 27.1 2.9e-08 33.7 13.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282162803|ref|YP_003355188.1| - 8.2e-11 41.9 27.1 6.3e-08 32.6 15.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282162803|ref|YP_003355188.1| - 3.7e-10 39.3 19.9 2e-05 24.4 3.7 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|282162803|ref|YP_003355188.1| - 6.1e-10 39.9 10.6 2.6e-05 25.1 0.8 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|282162803|ref|YP_003355188.1| - 2.1e-07 30.9 19.0 5.2e-05 23.4 3.7 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282162803|ref|YP_003355188.1| - 2.6e-05 24.6 16.4 0.0057 17.1 16.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|282162803|ref|YP_003355188.1| - 3.9e-05 24.3 29.1 0.00082 20.1 9.9 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|282162803|ref|YP_003355188.1| - 5.4e-05 23.4 14.6 0.0011 19.2 14.6 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282162803|ref|YP_003355188.1| - 0.00026 21.5 14.2 0.077 13.5 3.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282162803|ref|YP_003355188.1| - 0.0005 20.6 12.2 0.024 15.2 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|282162803|ref|YP_003355188.1| - 0.0005 20.9 13.4 0.018 15.9 2.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain NIL PF09383.10 gi|282162803|ref|YP_003355188.1| - 0.0027 17.5 0.0 0.0041 16.9 0.0 1.2 1 0 0 1 1 1 1 NIL domain Fer4_15 PF13459.6 gi|282162803|ref|YP_003355188.1| - 0.004 17.9 13.9 0.064 14.0 1.6 3.0 2 1 1 3 3 3 2 4Fe-4S single cluster domain Trp_syntA PF00290.20 gi|282162803|ref|YP_003355188.1| - 0.14 11.0 0.2 0.17 10.7 0.2 1.1 1 0 0 1 1 1 0 Tryptophan synthase alpha chain ETF_QO PF05187.13 gi|282162803|ref|YP_003355188.1| - 0.87 9.8 7.5 0.52 10.5 0.7 2.3 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S ApbE PF02424.15 gi|282162804|ref|YP_003355189.1| - 4.8 6.6 5.2 1.9 7.9 0.5 2.0 1 1 0 2 2 2 0 ApbE family Glycos_transf_2 PF00535.26 gi|282162805|ref|YP_003355190.1| - 1.3e-26 93.4 0.1 3.8e-26 91.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282162805|ref|YP_003355190.1| - 2.9e-14 53.5 0.0 1.6e-13 51.1 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|282162805|ref|YP_003355190.1| - 2e-11 43.9 0.1 6.6e-06 25.8 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|282162805|ref|YP_003355190.1| - 3.7e-08 33.0 0.0 5.4e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|282162805|ref|YP_003355190.1| - 2e-07 31.1 0.0 3.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.14 gi|282162805|ref|YP_003355190.1| - 1.6e-05 24.5 0.0 2.6e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.6 gi|282162805|ref|YP_003355190.1| - 0.0012 19.3 0.0 0.0023 18.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF4477 PF14780.6 gi|282162805|ref|YP_003355190.1| - 0.075 12.6 0.0 0.35 10.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4477) Glyco_tranf_2_5 PF13712.6 gi|282162805|ref|YP_003355190.1| - 0.15 11.7 0.1 2.1 8.0 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase like family DUF5048 PF16467.5 gi|282162806|ref|YP_003355191.1| - 0.1 12.9 0.8 4.7 7.6 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF5048) DUF460 PF04312.13 gi|282162807|ref|YP_003355192.1| - 6.9e-51 171.7 1.8 9.2e-51 171.2 0.8 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|282162807|ref|YP_003355192.1| - 3.2e-05 24.2 1.4 0.00021 21.6 0.1 2.7 3 0 0 3 3 2 1 Actinobacteria/chloroflexi VLRF1 release factor BLOC1_2 PF10046.9 gi|282162807|ref|YP_003355192.1| - 0.0069 16.7 2.2 2.1 8.7 0.3 3.1 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Lzipper-MIP1 PF14389.6 gi|282162807|ref|YP_003355192.1| - 0.031 14.6 0.4 1.9 8.9 0.1 2.6 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 ATG16 PF08614.11 gi|282162807|ref|YP_003355192.1| - 0.061 13.5 9.1 1.7 8.9 3.6 2.7 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Macoilin PF09726.9 gi|282162807|ref|YP_003355192.1| - 0.067 11.7 1.9 0.12 10.9 1.9 1.3 1 0 0 1 1 1 0 Macoilin family Cast PF10174.9 gi|282162807|ref|YP_003355192.1| - 0.1 10.8 9.1 0.16 10.2 9.1 1.2 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Spc7 PF08317.11 gi|282162807|ref|YP_003355192.1| - 0.13 11.1 6.3 0.29 10.0 4.1 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein TSC22 PF01166.18 gi|282162807|ref|YP_003355192.1| - 0.21 11.9 3.6 13 6.1 0.1 3.0 3 0 0 3 3 2 0 TSC-22/dip/bun family ZapB PF06005.12 gi|282162807|ref|YP_003355192.1| - 0.27 11.7 0.1 0.27 11.7 0.1 3.3 3 0 0 3 3 3 0 Cell division protein ZapB DivIC PF04977.15 gi|282162807|ref|YP_003355192.1| - 0.72 9.7 12.9 0.12 12.2 0.5 4.0 4 0 0 4 4 4 0 Septum formation initiator Sipho_Gp157 PF05565.11 gi|282162807|ref|YP_003355192.1| - 0.97 9.4 5.4 13 5.8 0.5 2.5 2 0 0 2 2 2 0 Siphovirus Gp157 DUF1664 PF07889.12 gi|282162807|ref|YP_003355192.1| - 1.2 9.2 4.4 0.85 9.7 0.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) APG6_N PF17675.1 gi|282162807|ref|YP_003355192.1| - 1.5 9.3 7.5 0.36 11.4 3.1 2.2 3 0 0 3 3 2 0 Apg6 coiled-coil region Cnn_1N PF07989.11 gi|282162807|ref|YP_003355192.1| - 2 8.6 6.6 3.8 7.7 0.1 2.7 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 PKcGMP_CC PF16808.5 gi|282162807|ref|YP_003355192.1| - 2.2 8.2 18.4 1.1 9.1 1.6 4.2 4 0 0 4 4 4 0 Coiled-coil N-terminus of cGMP-dependent protein kinase CENP-H PF05837.12 gi|282162807|ref|YP_003355192.1| - 2.5 8.5 7.8 3.6 8.0 0.3 3.3 3 0 0 3 3 3 0 Centromere protein H (CENP-H) DUF641 PF04859.12 gi|282162807|ref|YP_003355192.1| - 5.3 7.4 6.2 14 6.0 1.1 2.6 1 1 0 2 2 2 0 Plant protein of unknown function (DUF641) GrpE PF01025.19 gi|282162807|ref|YP_003355192.1| - 5.4 6.6 7.2 16 5.1 1.2 2.7 1 1 1 2 2 2 0 GrpE Fez1 PF06818.15 gi|282162807|ref|YP_003355192.1| - 6.7 7.1 9.1 1.1 9.6 4.9 1.9 2 0 0 2 2 1 0 Fez1 YabA PF06156.13 gi|282162807|ref|YP_003355192.1| - 7.6 7.2 5.5 57 4.4 0.4 2.7 1 1 1 2 2 2 0 Initiation control protein YabA GAS PF13851.6 gi|282162807|ref|YP_003355192.1| - 8 5.8 9.5 6.8 6.0 2.7 2.7 1 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.10 gi|282162807|ref|YP_003355192.1| - 8.4 6.6 6.4 1.9 8.7 0.5 2.3 2 1 0 3 3 3 0 Fibrinogen alpha/beta chain family SlyX PF04102.12 gi|282162807|ref|YP_003355192.1| - 8.4 7.1 6.5 41 4.9 1.9 3.0 1 1 1 2 2 2 0 SlyX PI3K_P85_iSH2 PF16454.5 gi|282162807|ref|YP_003355192.1| - 8.6 5.9 10.5 12 5.5 0.8 2.7 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain AIRC PF00731.20 gi|282162808|ref|YP_003355193.1| - 2.4e-17 62.9 5.3 4e-17 62.2 5.3 1.3 1 0 0 1 1 1 1 AIR carboxylase DUF374 PF04028.13 gi|282162808|ref|YP_003355193.1| - 0.0076 15.8 1.8 12 5.5 0.0 3.6 3 1 1 4 4 4 2 Domain of unknown function (DUF374) CP_ATPgrasp_2 PF14403.6 gi|282162808|ref|YP_003355193.1| - 0.12 11.3 0.0 0.21 10.5 0.0 1.3 1 1 0 1 1 1 0 Circularly permuted ATP-grasp type 2 polyprenyl_synt PF00348.17 gi|282162809|ref|YP_003355194.1| - 2.2e-63 213.7 0.0 2.8e-63 213.3 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase AAA_31 PF13614.6 gi|282162810|ref|YP_003355195.1| - 2.2e-24 86.4 0.0 3.1e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|282162810|ref|YP_003355195.1| - 6.2e-18 65.1 0.1 1.2e-17 64.1 0.1 1.5 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|282162810|ref|YP_003355195.1| - 1.2e-17 64.2 0.0 2.2e-17 63.3 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|282162810|ref|YP_003355195.1| - 4.9e-11 42.4 0.2 2.1e-10 40.4 0.2 1.8 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|282162810|ref|YP_003355195.1| - 3.5e-09 36.5 0.0 5.2e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|282162810|ref|YP_003355195.1| - 3.3e-08 33.3 0.0 4.6e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|282162810|ref|YP_003355195.1| - 2.8e-07 30.0 0.1 5.2e-07 29.1 0.0 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|282162810|ref|YP_003355195.1| - 2.8e-06 27.3 0.1 1.3e-05 25.1 0.0 2.1 2 1 0 2 2 2 1 AAA domain GTP_EFTU PF00009.27 gi|282162810|ref|YP_003355195.1| - 8.8e-05 22.1 0.1 0.00035 20.2 0.0 1.9 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain CLP1_P PF16575.5 gi|282162810|ref|YP_003355195.1| - 0.00019 21.3 0.0 0.0013 18.6 0.0 2.2 1 1 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 gi|282162810|ref|YP_003355195.1| - 0.0039 16.5 0.4 0.026 13.8 0.2 2.0 2 0 0 2 2 2 1 VirC1 protein AAA_25 PF13481.6 gi|282162810|ref|YP_003355195.1| - 0.0041 16.7 0.7 0.0089 15.6 0.7 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|282162810|ref|YP_003355195.1| - 0.0071 16.1 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain FTHFS PF01268.19 gi|282162810|ref|YP_003355195.1| - 0.017 13.3 0.3 0.024 12.9 0.3 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase AAA_30 PF13604.6 gi|282162810|ref|YP_003355195.1| - 0.023 14.4 2.4 0.021 14.5 0.7 2.0 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|282162810|ref|YP_003355195.1| - 0.028 14.3 0.1 0.047 13.6 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase PhoH PF02562.16 gi|282162810|ref|YP_003355195.1| - 0.049 13.1 0.3 0.079 12.4 0.3 1.3 1 0 0 1 1 1 0 PhoH-like protein DUF72 PF01904.18 gi|282162811|ref|YP_003355196.1| - 1.1e-52 179.3 0.1 1.3e-52 179.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 TatC PF00902.18 gi|282162812|ref|YP_003355197.1| - 8.1e-43 146.7 21.0 1e-42 146.4 21.0 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) NADH-u_ox-rdase PF10785.9 gi|282162812|ref|YP_003355197.1| - 0.097 13.4 1.3 1.4 9.7 0.2 2.8 2 2 0 2 2 2 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Glycos_transf_1 PF00534.20 gi|282162813|ref|YP_003355198.1| - 1.3e-45 155.0 0.0 2e-45 154.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282162813|ref|YP_003355198.1| - 1.1e-37 129.5 0.0 2.4e-37 128.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282162813|ref|YP_003355198.1| - 8.3e-35 120.3 0.3 3.5e-34 118.3 0.5 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|282162813|ref|YP_003355198.1| - 4.3e-26 92.3 0.1 8.8e-26 91.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|282162813|ref|YP_003355198.1| - 6.8e-13 48.8 0.0 2e-12 47.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|282162813|ref|YP_003355198.1| - 3e-08 33.8 0.0 5.1e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|282162813|ref|YP_003355198.1| - 0.00011 22.0 0.4 0.0038 17.0 0.4 2.5 1 1 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|282162814|ref|YP_003355199.1| - 3.6e-45 153.6 0.0 7.5e-45 152.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282162814|ref|YP_003355199.1| - 2e-34 118.9 0.0 3.4e-34 118.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282162814|ref|YP_003355199.1| - 1.7e-31 109.5 0.0 3.3e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|282162814|ref|YP_003355199.1| - 2.6e-20 73.5 0.0 7.6e-20 72.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|282162814|ref|YP_003355199.1| - 1.3e-09 38.2 0.0 2e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|282162814|ref|YP_003355199.1| - 2.2e-07 31.2 0.0 4.1e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|282162814|ref|YP_003355199.1| - 0.0048 16.6 0.1 0.18 11.5 0.1 2.7 1 1 0 1 1 1 1 Starch synthase catalytic domain Acetyltransf_1 PF00583.25 gi|282162815|ref|YP_003355200.1| - 1.4e-14 54.3 0.1 3.6e-14 53.0 0.1 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|282162815|ref|YP_003355200.1| - 7.2e-10 39.2 0.1 1.7e-09 38.0 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|282162815|ref|YP_003355200.1| - 8.5e-10 38.7 0.0 2.2e-09 37.3 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|282162815|ref|YP_003355200.1| - 1.2e-05 25.2 0.0 2.4e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 gi|282162815|ref|YP_003355200.1| - 2.4e-05 24.5 1.0 0.0021 18.2 0.2 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|282162815|ref|YP_003355200.1| - 0.00075 19.6 0.0 0.0022 18.1 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|282162815|ref|YP_003355200.1| - 0.2 11.8 0.0 0.32 11.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Helicase_C PF00271.31 gi|282162816|ref|YP_003355201.1| - 4.8e-25 88.1 0.0 1.1e-21 77.3 0.0 2.5 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ERCC4 PF02732.15 gi|282162816|ref|YP_003355201.1| - 1.3e-24 87.2 0.0 5.9e-24 85.0 0.0 2.0 2 0 0 2 2 2 1 ERCC4 domain DEAD PF00270.29 gi|282162816|ref|YP_003355201.1| - 1.2e-19 70.8 0.0 3.1e-19 69.4 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|282162816|ref|YP_003355201.1| - 1.3e-16 61.1 0.0 2.6e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|282162816|ref|YP_003355201.1| - 7.6e-11 42.0 0.0 2.4e-10 40.4 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|282162816|ref|YP_003355201.1| - 1.3e-08 35.3 0.1 4.5e-08 33.6 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|282162816|ref|YP_003355201.1| - 0.00017 21.3 0.6 0.00078 19.2 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif SWI2_SNF2 PF18766.1 gi|282162816|ref|YP_003355201.1| - 0.025 14.2 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 SWI2/SNF2 ATPase ERCC3_RAD25_C PF16203.5 gi|282162816|ref|YP_003355201.1| - 0.071 12.3 0.0 0.17 11.1 0.0 1.7 1 1 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase DUF2075 PF09848.9 gi|282162816|ref|YP_003355201.1| - 0.096 11.9 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PK_C PF02887.16 gi|282162816|ref|YP_003355201.1| - 0.1 12.8 0.2 0.82 9.9 0.0 2.5 3 0 0 3 3 3 0 Pyruvate kinase, alpha/beta domain HHH_8 PF14716.6 gi|282162816|ref|YP_003355201.1| - 0.12 12.7 0.0 0.36 11.2 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|282162816|ref|YP_003355201.1| - 0.75 10.4 4.5 1.2 9.8 0.1 3.4 4 2 1 5 5 4 0 5'-3' exonuclease, C-terminal SAM fold HGTP_anticodon PF03129.20 gi|282162818|ref|YP_003355203.1| - 1.1e-21 76.8 0.0 2.3e-21 75.7 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|282162818|ref|YP_003355203.1| - 1.8e-09 37.8 0.0 5.5e-09 36.2 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Zn-ribbon_8 PF09723.10 gi|282162818|ref|YP_003355203.1| - 0.023 14.8 0.1 1.3 9.2 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain RseC_MucC PF04246.12 gi|282162820|ref|YP_003355205.1| - 0.01 15.8 0.1 0.014 15.3 0.1 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC SpoU_methylas_C PF12105.8 gi|282162820|ref|YP_003355205.1| - 0.053 13.2 0.0 0.097 12.4 0.0 1.4 1 0 0 1 1 1 0 SpoU, rRNA methylase, C-terminal Thioredoxin_3 PF13192.6 gi|282162820|ref|YP_003355205.1| - 0.058 13.4 0.3 0.21 11.6 0.3 2.0 1 1 0 1 1 1 0 Thioredoxin domain Lactamase_B_2 PF12706.7 gi|282162821|ref|YP_003355206.1| - 0.00028 20.5 0.1 0.0018 17.8 0.1 2.1 2 1 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|282162821|ref|YP_003355206.1| - 0.024 14.6 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|282162821|ref|YP_003355206.1| - 0.044 13.8 1.2 0.091 12.8 0.9 1.8 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily CarboxypepD_reg PF13620.6 gi|282162822|ref|YP_003355207.1| - 1.3e-08 34.9 6.1 1.9e-05 24.9 1.2 2.5 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain PGF-CTERM PF18204.1 gi|282162822|ref|YP_003355207.1| - 4e-07 29.8 1.9 4e-07 29.8 1.9 2.1 2 0 0 2 2 2 1 PGF-CTERM motif SpaA PF17802.1 gi|282162822|ref|YP_003355207.1| - 5.3e-07 29.9 8.2 0.002 18.4 8.2 3.3 1 1 0 1 1 1 1 Prealbumin-like fold domain SdrD_B PF17210.3 gi|282162822|ref|YP_003355207.1| - 0.0017 18.5 5.9 0.12 12.6 1.0 2.3 1 1 1 2 2 2 2 SdrD B-like domain CarbopepD_reg_2 PF13715.6 gi|282162822|ref|YP_003355207.1| - 0.0058 16.6 1.0 0.0058 16.6 1.0 2.9 2 2 0 2 2 2 1 CarboxypepD_reg-like domain SusF_SusE PF16411.5 gi|282162822|ref|YP_003355207.1| - 0.14 12.7 1.9 1.6 9.2 0.4 2.1 1 1 1 2 2 2 0 Outer membrane protein SusF_SusE DUF5334 PF17268.2 gi|282162822|ref|YP_003355207.1| - 0.15 12.4 0.2 2.2 8.6 0.0 2.5 2 1 0 2 2 2 0 Family of unknown function (DUF5334) HTH_20 PF12840.7 gi|282162823|ref|YP_003355208.1| - 4.7e-09 36.2 0.0 8e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|282162823|ref|YP_003355208.1| - 3.3e-06 26.9 0.1 5.8e-06 26.1 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|282162823|ref|YP_003355208.1| - 3e-05 23.5 0.0 4.7e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|282162823|ref|YP_003355208.1| - 4.7e-05 23.2 0.0 8.3e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF742 PF05331.11 gi|282162823|ref|YP_003355208.1| - 0.00055 19.7 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF742) MarR_2 PF12802.7 gi|282162823|ref|YP_003355208.1| - 0.00055 19.8 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|282162823|ref|YP_003355208.1| - 0.002 18.6 0.0 0.0035 17.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_47 PF16221.5 gi|282162823|ref|YP_003355208.1| - 0.005 16.4 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 winged helix-turn-helix HTH_IclR PF09339.10 gi|282162823|ref|YP_003355208.1| - 0.0061 16.3 0.0 0.016 15.0 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|282162823|ref|YP_003355208.1| - 0.014 15.5 0.0 0.028 14.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.17 gi|282162823|ref|YP_003355208.1| - 0.037 13.9 0.0 0.059 13.2 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit DUF997 PF06196.12 gi|282162823|ref|YP_003355208.1| - 0.15 12.1 0.4 0.15 12.1 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF997) TrkA_N PF02254.18 gi|282162824|ref|YP_003355209.1| - 2e-21 76.4 0.0 8.6e-21 74.4 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain DHHA1 PF02272.19 gi|282162824|ref|YP_003355209.1| - 5.8e-14 52.7 0.1 1.1e-13 51.7 0.1 1.4 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|282162824|ref|YP_003355209.1| - 6.3e-14 52.0 0.0 1.1e-13 51.3 0.0 1.4 1 0 0 1 1 1 1 DHH family ApbA PF02558.16 gi|282162824|ref|YP_003355209.1| - 0.0022 17.6 0.0 0.0039 16.8 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|282162824|ref|YP_003355209.1| - 0.022 15.4 0.0 0.058 14.0 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|282162824|ref|YP_003355209.1| - 0.034 14.4 0.0 0.07 13.4 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DAO PF01266.24 gi|282162824|ref|YP_003355209.1| - 0.043 13.4 0.0 0.13 11.8 0.0 1.8 3 0 0 3 3 3 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|282162824|ref|YP_003355209.1| - 0.056 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.21 gi|282162824|ref|YP_003355209.1| - 0.057 12.9 0.0 0.095 12.1 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Usp PF00582.26 gi|282162825|ref|YP_003355210.1| - 7.8e-24 84.8 0.2 1e-23 84.4 0.2 1.2 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|282162825|ref|YP_003355210.1| - 0.0013 18.8 0.0 0.0016 18.5 0.0 1.1 1 0 0 1 1 1 1 DNA photolyase DIM PF08194.12 gi|282162826|ref|YP_003355211.1| - 0.9 9.8 6.3 0.29 11.4 0.9 2.4 2 0 0 2 2 2 0 DIM protein PEP-CTERM PF07589.11 gi|282162826|ref|YP_003355211.1| - 2.5 8.3 4.7 1.2 9.3 1.3 2.2 2 0 0 2 2 2 0 PEP-CTERM motif CxxCxxCC PF03692.15 gi|282162827|ref|YP_003355212.1| - 0.00016 22.3 7.0 0.0014 19.3 7.0 2.2 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain GA-like PF17573.2 gi|282162827|ref|YP_003355212.1| - 0.15 12.0 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 GA-like domain DZR PF12773.7 gi|282162828|ref|YP_003355213.1| - 4.7e-09 36.1 11.8 4.7e-09 36.1 11.8 3.6 3 1 1 4 4 4 3 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|282162828|ref|YP_003355213.1| - 6.1e-08 31.8 26.5 9.2e-05 21.7 1.9 4.3 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|282162828|ref|YP_003355213.1| - 3.6e-07 29.7 27.4 9.6e-06 25.1 2.5 4.8 5 0 0 5 5 5 3 zinc-ribbon domain UPF0547 PF10571.9 gi|282162828|ref|YP_003355213.1| - 0.001 19.1 1.8 0.001 19.1 1.8 4.3 4 0 0 4 4 4 1 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|282162828|ref|YP_003355213.1| - 0.0038 18.0 20.9 0.06 14.1 0.7 4.0 2 1 1 3 3 3 2 zinc-ribbon family PolC_DP2 PF03833.13 gi|282162828|ref|YP_003355213.1| - 0.087 10.7 8.5 0.019 12.9 5.5 1.4 1 1 0 1 1 1 0 DNA polymerase II large subunit DP2 Nudix_N_2 PF14803.6 gi|282162828|ref|YP_003355213.1| - 1.8 8.5 26.7 0.4 10.7 0.3 5.6 5 1 1 6 6 6 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|282162828|ref|YP_003355213.1| - 2.2 8.3 21.6 4 7.4 0.5 4.1 3 1 0 3 3 3 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|282162828|ref|YP_003355213.1| - 2.7 8.0 20.7 82 3.3 16.5 3.9 2 1 1 3 3 3 0 zinc-ribbons Ribosomal_L32p PF01783.23 gi|282162828|ref|YP_003355213.1| - 3.6 7.9 15.6 3.2 8.1 3.5 3.5 2 1 1 3 3 3 0 Ribosomal L32p protein family zf-TFIIB PF13453.6 gi|282162828|ref|YP_003355213.1| - 3.7 7.0 12.0 4.3 6.8 0.1 3.7 2 1 1 3 3 3 0 Transcription factor zinc-finger zf-B_box PF00643.24 gi|282162828|ref|YP_003355213.1| - 4.7 7.5 16.3 4.4 7.5 2.7 4.3 3 1 1 4 4 4 0 B-box zinc finger DZR PF12773.7 gi|282162829|ref|YP_003355214.1| - 1.3e-15 57.1 28.0 1.2e-06 28.4 3.8 3.2 2 1 1 3 3 3 3 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|282162829|ref|YP_003355214.1| - 6.7e-13 47.6 42.4 4.4e-06 25.9 4.0 5.5 2 1 3 5 5 5 4 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|282162829|ref|YP_003355214.1| - 2.1e-12 46.3 36.4 1.5e-05 24.5 2.7 6.1 5 1 0 5 5 5 4 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|282162829|ref|YP_003355214.1| - 7.8e-06 25.7 33.1 0.06 13.3 4.8 5.2 3 1 2 5 5 5 4 Prokaryotic RING finger family 1 zinc_ribbon_15 PF17032.5 gi|282162829|ref|YP_003355214.1| - 8.2e-05 23.3 8.7 0.0037 18.0 1.1 4.1 3 1 0 3 3 3 2 zinc-ribbon family UPF0547 PF10571.9 gi|282162829|ref|YP_003355214.1| - 9e-05 22.5 11.7 0.00091 19.3 1.2 5.7 5 2 0 5 5 5 2 Uncharacterised protein family UPF0547 DUF2089 PF09862.9 gi|282162829|ref|YP_003355214.1| - 0.00073 19.5 0.3 0.00073 19.5 0.3 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF2089) zf-HIT PF04438.16 gi|282162829|ref|YP_003355214.1| - 0.002 17.9 2.2 0.002 17.9 2.2 5.5 3 1 2 5 5 4 1 HIT zinc finger Cript PF10235.9 gi|282162829|ref|YP_003355214.1| - 0.0093 16.5 3.4 0.0093 16.5 3.4 4.6 1 1 3 4 4 3 1 Microtubule-associated protein CRIPT PolC_DP2 PF03833.13 gi|282162829|ref|YP_003355214.1| - 0.013 13.4 16.4 0.042 11.7 6.1 2.0 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Cys_rich_CPXG PF14255.6 gi|282162829|ref|YP_003355214.1| - 0.053 13.4 4.3 0.053 13.4 4.3 5.6 5 1 1 6 6 6 0 Cysteine-rich CPXCG TF_Zn_Ribbon PF08271.12 gi|282162829|ref|YP_003355214.1| - 0.055 13.0 2.2 0.055 13.0 2.2 6.0 3 2 2 5 5 5 0 TFIIB zinc-binding zf_C2H2_6 PF18450.1 gi|282162829|ref|YP_003355214.1| - 0.4 10.4 13.1 3.4 7.5 0.5 4.3 3 1 1 4 4 4 0 Zinc Finger domain tRNA-synt_1g PF09334.11 gi|282162829|ref|YP_003355214.1| - 0.47 9.1 18.9 0.46 9.2 5.9 3.0 1 1 2 3 3 3 0 tRNA synthetases class I (M) DUF35_N PF12172.8 gi|282162829|ref|YP_003355214.1| - 0.73 9.8 42.8 0.37 10.7 5.7 5.9 4 2 1 5 5 5 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc-ribbon_6 PF10005.9 gi|282162829|ref|YP_003355214.1| - 2.1 9.1 17.8 13 6.6 0.5 4.0 2 1 2 4 4 4 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|282162829|ref|YP_003355214.1| - 3 7.7 32.1 0.39 10.5 1.2 6.7 4 1 2 6 6 6 0 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|282162829|ref|YP_003355214.1| - 3 8.2 0.1 3 8.2 0.1 7.1 6 2 1 8 8 8 0 Zinc-binding domain of primase-helicase zf_UBZ PF18439.1 gi|282162829|ref|YP_003355214.1| - 3.4 7.3 34.3 7.8 6.2 0.3 7.5 3 2 5 8 8 8 0 Ubiquitin-Binding Zinc Finger zf-C3HC4_3 PF13920.6 gi|282162829|ref|YP_003355214.1| - 4.5 7.2 32.4 1.7 8.6 2.8 4.9 2 2 2 4 4 4 0 Zinc finger, C3HC4 type (RING finger) SecD_SecF PF02355.16 gi|282162831|ref|YP_003355216.1| - 7.8e-15 54.8 11.0 7.8e-15 54.8 11.0 1.7 2 0 0 2 2 2 1 Protein export membrane protein MMPL PF03176.15 gi|282162831|ref|YP_003355216.1| - 0.00021 20.4 11.6 0.00032 19.7 11.6 1.3 1 0 0 1 1 1 1 MMPL family TMEMspv1-c74-12 PF11044.8 gi|282162831|ref|YP_003355216.1| - 0.013 15.4 1.6 0.013 15.4 1.6 3.1 4 0 0 4 4 4 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Sterol-sensing PF12349.8 gi|282162831|ref|YP_003355216.1| - 0.12 12.2 6.0 0.13 12.1 4.8 1.6 1 1 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation ETRAMP PF09716.10 gi|282162831|ref|YP_003355216.1| - 0.74 9.9 5.5 6.9 6.8 0.0 3.3 3 0 0 3 3 3 0 Malarial early transcribed membrane protein (ETRAMP) SecD_SecF PF02355.16 gi|282162832|ref|YP_003355217.1| - 7e-31 107.1 15.7 1e-30 106.5 15.7 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|282162832|ref|YP_003355217.1| - 3.1e-08 32.8 0.6 7.6e-08 31.6 0.6 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.15 gi|282162832|ref|YP_003355217.1| - 0.0025 16.8 16.5 0.0025 16.8 16.5 1.4 2 0 0 2 2 2 1 MMPL family COX4 PF02936.14 gi|282162832|ref|YP_003355217.1| - 0.077 13.0 0.2 0.51 10.3 0.1 2.3 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IV ACR_tran PF00873.19 gi|282162832|ref|YP_003355217.1| - 0.12 10.0 6.8 0.15 9.7 6.8 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family Patched PF02460.18 gi|282162832|ref|YP_003355217.1| - 2.2 6.2 18.0 2.9 5.8 18.0 1.1 1 0 0 1 1 1 0 Patched family Put_DNA-bind_N PF06971.13 gi|282162833|ref|YP_003355218.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus DUF362 PF04015.12 gi|282162834|ref|YP_003355219.1| - 1.1e-37 130.2 0.0 1.5e-37 129.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_6 PF12837.7 gi|282162834|ref|YP_003355219.1| - 2.7e-07 30.4 12.4 0.00045 20.2 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282162834|ref|YP_003355219.1| - 4.1e-07 30.0 21.4 1.3e-05 25.3 11.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282162834|ref|YP_003355219.1| - 5.1e-07 30.2 7.9 0.00054 20.5 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282162834|ref|YP_003355219.1| - 7.1e-07 28.8 15.7 9.1e-05 22.1 3.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282162834|ref|YP_003355219.1| - 4.3e-06 27.1 4.5 0.0039 17.6 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282162834|ref|YP_003355219.1| - 4.8e-06 26.6 10.0 8.9e-06 25.7 10.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282162834|ref|YP_003355219.1| - 3.7e-05 24.6 11.3 0.0014 19.5 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|282162834|ref|YP_003355219.1| - 5.7e-05 23.3 8.1 0.0002 21.5 8.1 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282162834|ref|YP_003355219.1| - 0.00018 21.4 13.7 0.0021 18.0 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|282162834|ref|YP_003355219.1| - 0.00035 21.3 15.9 0.0077 17.1 4.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|282162834|ref|YP_003355219.1| - 0.0026 18.1 13.5 0.0038 17.6 3.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282162834|ref|YP_003355219.1| - 0.0037 17.8 11.5 0.046 14.3 2.5 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282162834|ref|YP_003355219.1| - 0.0097 16.0 14.6 0.081 13.1 3.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282162834|ref|YP_003355219.1| - 0.11 13.1 12.2 1.6 9.4 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DUF3810 PF12725.7 gi|282162835|ref|YP_003355220.1| - 6.2 6.1 6.1 3.3 7.0 1.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) Thymidylate_kin PF02223.17 gi|282162836|ref|YP_003355221.1| - 7e-22 78.0 0.0 8e-22 77.8 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|282162836|ref|YP_003355221.1| - 0.0001 22.2 0.0 0.001 19.0 0.0 2.0 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|282162836|ref|YP_003355221.1| - 0.00011 22.7 0.0 0.00053 20.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|282162836|ref|YP_003355221.1| - 0.023 15.1 0.0 3.4 8.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|282162836|ref|YP_003355221.1| - 0.058 13.0 0.0 0.077 12.6 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|282162836|ref|YP_003355221.1| - 0.091 12.7 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_33 PF13671.6 gi|282162836|ref|YP_003355221.1| - 0.094 12.9 0.1 0.79 9.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain Shikimate_dh_N PF08501.11 gi|282162837|ref|YP_003355222.1| - 5.7e-27 93.8 0.0 2.4e-26 91.8 0.0 2.0 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|282162837|ref|YP_003355222.1| - 4.5e-13 48.7 0.0 1.1e-12 47.5 0.0 1.7 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|282162837|ref|YP_003355222.1| - 1.4e-09 38.2 0.1 2.2e-09 37.5 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 gi|282162837|ref|YP_003355222.1| - 0.00013 21.3 0.6 0.0057 16.0 0.0 2.2 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AlaDh_PNT_C PF01262.21 gi|282162837|ref|YP_003355222.1| - 0.00078 18.8 1.5 0.0012 18.2 1.5 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|282162837|ref|YP_003355222.1| - 0.0011 19.3 0.5 0.0042 17.3 0.3 2.1 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|282162837|ref|YP_003355222.1| - 0.0021 18.5 0.2 0.0031 17.9 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding adh_short PF00106.25 gi|282162837|ref|YP_003355222.1| - 0.0093 15.4 0.3 0.014 14.9 0.3 1.4 1 0 0 1 1 1 1 short chain dehydrogenase F420_oxidored PF03807.17 gi|282162837|ref|YP_003355222.1| - 0.015 15.8 0.2 0.032 14.8 0.2 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|282162837|ref|YP_003355222.1| - 0.017 14.5 0.1 0.038 13.4 0.1 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|282162837|ref|YP_003355222.1| - 0.097 12.3 0.2 0.25 11.0 0.2 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PDH PF02153.17 gi|282162838|ref|YP_003355223.1| - 5.2e-36 124.0 0.0 7.7e-36 123.4 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.15 gi|282162838|ref|YP_003355223.1| - 4.8e-05 23.6 0.0 0.0001 22.5 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|282162838|ref|YP_003355223.1| - 6.1e-05 23.5 0.0 0.00015 22.3 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|282162838|ref|YP_003355223.1| - 0.018 14.6 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ID PF18543.1 gi|282162838|ref|YP_003355223.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Intracellular delivery domain CM_2 PF01817.21 gi|282162839|ref|YP_003355224.1| - 2.5e-16 59.8 4.1 2.9e-16 59.6 4.1 1.0 1 0 0 1 1 1 1 Chorismate mutase type II FlgT_M PF16539.5 gi|282162839|ref|YP_003355224.1| - 0.013 15.6 0.1 0.015 15.4 0.1 1.0 1 0 0 1 1 1 0 Flagellar assembly protein T, middle domain DUF5603 PF18231.1 gi|282162839|ref|YP_003355224.1| - 2.6 8.4 6.7 0.64 10.3 1.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5603) GHMP_kinases_N PF00288.26 gi|282162840|ref|YP_003355225.1| - 1.4e-11 44.4 1.0 3.5e-11 43.2 0.4 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|282162840|ref|YP_003355225.1| - 0.00025 21.3 0.1 0.0013 19.1 0.1 2.1 1 1 1 2 2 2 1 GHMP kinases C terminal DUF4921 PF16268.5 gi|282162841|ref|YP_003355226.1| - 5e-12 45.4 0.0 4.2e-05 22.6 0.0 3.4 3 1 1 4 4 4 3 Domain of unknown function (DUF4921) GalP_UDP_transf PF01087.22 gi|282162841|ref|YP_003355226.1| - 2.7e-09 37.7 0.0 3.6e-07 30.8 0.0 2.3 2 0 0 2 2 2 2 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|282162841|ref|YP_003355226.1| - 3.8e-06 26.7 0.0 5.9e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DUF4931 PF16285.5 gi|282162841|ref|YP_003355226.1| - 0.00035 20.0 0.0 0.00044 19.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4931) HIT PF01230.23 gi|282162841|ref|YP_003355226.1| - 0.022 15.5 0.0 0.45 11.3 0.0 2.4 2 1 0 2 2 2 0 HIT domain Glycos_transf_1 PF00534.20 gi|282162842|ref|YP_003355227.1| - 1e-35 122.8 0.0 1.4e-35 122.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282162842|ref|YP_003355227.1| - 8.8e-24 84.4 0.1 4.3e-23 82.2 0.1 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|282162842|ref|YP_003355227.1| - 2.8e-23 82.8 0.0 4.4e-23 82.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|282162842|ref|YP_003355227.1| - 7e-22 78.6 0.0 1.3e-21 77.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|282162842|ref|YP_003355227.1| - 1.3e-12 48.0 0.1 7.3e-11 42.2 0.1 2.6 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|282162842|ref|YP_003355227.1| - 5.3e-07 29.9 0.0 9.8e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|282162842|ref|YP_003355227.1| - 0.0039 15.9 0.0 0.024 13.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase family 20 Thump_like PF18096.1 gi|282162842|ref|YP_003355227.1| - 0.075 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 THUMP domain-like CAP59_mtransfer PF11735.8 gi|282162842|ref|YP_003355227.1| - 0.076 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 RCC1_2 PF13540.6 gi|282162842|ref|YP_003355227.1| - 0.15 11.9 0.2 25 4.8 0.0 2.6 2 0 0 2 2 2 0 Regulator of chromosome condensation (RCC1) repeat Glycogen_syn PF05693.13 gi|282162842|ref|YP_003355227.1| - 0.16 10.5 0.0 0.48 8.9 0.0 1.6 2 0 0 2 2 2 0 Glycogen synthase DJ-1_PfpI PF01965.24 gi|282162844|ref|YP_003355229.1| - 1.8e-36 125.4 0.1 2.2e-36 125.1 0.1 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|282162844|ref|YP_003355229.1| - 0.097 12.3 0.1 0.18 11.4 0.0 1.4 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain AP_endonuc_2 PF01261.24 gi|282162845|ref|YP_003355230.1| - 2.5e-25 89.2 0.3 2.9e-25 88.9 0.3 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|282162845|ref|YP_003355230.1| - 0.00052 19.0 0.1 0.001 18.0 0.0 1.4 2 0 0 2 2 2 1 D-mannonate dehydratase (UxuA) Nab2 PF11517.8 gi|282162846|ref|YP_003355231.1| - 0.071 13.4 0.1 0.13 12.6 0.1 1.4 1 0 0 1 1 1 0 Nuclear abundant poly(A) RNA-bind protein 2 (Nab2) ATPase PF06745.13 gi|282162847|ref|YP_003355232.1| - 2.9e-27 95.5 0.0 3.3e-27 95.3 0.0 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|282162847|ref|YP_003355232.1| - 1.1e-13 51.1 0.0 2.1e-08 33.8 0.0 2.0 2 0 0 2 2 2 2 PAXNEB protein MEDS PF14417.6 gi|282162847|ref|YP_003355232.1| - 0.007 16.2 0.0 0.014 15.2 0.0 1.7 1 1 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain GvpD PF07088.11 gi|282162847|ref|YP_003355232.1| - 0.013 14.1 0.1 2.2 6.8 0.1 2.3 2 1 0 2 2 2 0 GvpD gas vesicle protein Toxin-deaminase PF14424.6 gi|282162847|ref|YP_003355232.1| - 0.034 14.2 0.0 0.058 13.5 0.0 1.4 1 0 0 1 1 1 0 The BURPS668_1122 family of deaminases TPR_11 PF13414.6 gi|282162848|ref|YP_003355233.1| - 6.7e-53 176.1 11.9 1.1e-09 37.8 0.3 8.4 2 2 6 8 8 8 7 TPR repeat TPR_2 PF07719.17 gi|282162848|ref|YP_003355233.1| - 1.1e-40 134.5 25.2 1.1e-06 28.3 0.3 9.9 9 1 1 10 10 10 8 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282162848|ref|YP_003355233.1| - 4.3e-40 133.2 5.8 8.4e-05 22.7 0.0 7.5 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282162848|ref|YP_003355233.1| - 6.9e-39 130.1 16.7 2e-07 30.5 0.2 10.1 10 0 0 10 10 10 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282162848|ref|YP_003355233.1| - 9.7e-30 102.9 34.3 1.6e-11 44.7 2.0 6.8 3 2 4 8 8 8 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282162848|ref|YP_003355233.1| - 3.3e-29 99.0 25.4 2.7e-06 27.7 0.0 8.9 2 2 7 9 9 9 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282162848|ref|YP_003355233.1| - 4.9e-29 98.1 12.0 0.0019 18.3 0.0 9.6 9 1 1 10 10 10 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282162848|ref|YP_003355233.1| - 2.7e-21 75.8 17.6 8.5e-08 32.6 0.2 6.4 1 1 5 7 7 7 6 Tetratricopeptide repeat TPR_20 PF14561.6 gi|282162848|ref|YP_003355233.1| - 4e-16 59.1 5.8 1.7e-06 28.2 0.1 3.9 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282162848|ref|YP_003355233.1| - 5.9e-12 45.6 22.2 0.00067 19.8 1.0 6.3 3 2 4 7 7 7 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282162848|ref|YP_003355233.1| - 9.8e-11 41.8 23.0 0.0048 17.2 0.8 6.2 4 2 2 6 6 6 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282162848|ref|YP_003355233.1| - 1e-09 38.4 13.0 0.09 13.5 0.1 7.6 8 1 0 8 8 8 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282162848|ref|YP_003355233.1| - 2.7e-09 36.4 14.2 0.38 10.9 0.1 8.4 9 1 1 10 10 9 3 Tetratricopeptide repeat BTAD PF03704.17 gi|282162848|ref|YP_003355233.1| - 2.3e-07 31.3 10.0 0.079 13.4 0.1 4.2 1 1 3 4 4 4 3 Bacterial transcriptional activator domain ANAPC3 PF12895.7 gi|282162848|ref|YP_003355233.1| - 8.5e-06 25.9 0.7 0.3 11.3 0.0 3.2 2 1 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_21 PF09976.9 gi|282162848|ref|YP_003355233.1| - 0.004 16.9 7.6 0.043 13.5 0.7 3.0 2 2 0 2 2 2 2 Tetratricopeptide repeat-like domain PknG_TPR PF16918.5 gi|282162848|ref|YP_003355233.1| - 0.0064 15.3 2.4 0.022 13.5 0.5 2.1 2 0 0 2 2 2 1 Protein kinase G tetratricopeptide repeat FAT PF02259.23 gi|282162848|ref|YP_003355233.1| - 0.009 15.3 0.0 13 4.9 0.0 4.1 3 1 2 5 5 5 0 FAT domain RPN7 PF10602.9 gi|282162848|ref|YP_003355233.1| - 0.015 15.0 0.2 2.9 7.6 0.0 3.4 2 1 0 3 3 3 0 26S proteasome subunit RPN7 TPR_10 PF13374.6 gi|282162848|ref|YP_003355233.1| - 0.048 13.6 25.7 3.5 7.6 0.3 7.8 8 0 0 8 8 8 0 Tetratricopeptide repeat TPR_4 PF07721.14 gi|282162848|ref|YP_003355233.1| - 0.16 12.6 25.6 0.65 10.8 0.1 7.8 8 0 0 8 8 7 0 Tetratricopeptide repeat NARP1 PF12569.8 gi|282162848|ref|YP_003355233.1| - 0.22 10.4 0.6 8.5 5.1 0.1 2.7 2 1 1 3 3 3 0 NMDA receptor-regulated protein 1 DUF627 PF04781.12 gi|282162848|ref|YP_003355233.1| - 0.27 11.3 1.4 19 5.3 0.0 3.2 2 1 0 3 3 3 0 Protein of unknown function (DUF627) Lactamase_B_2 PF12706.7 gi|282162849|ref|YP_003355234.1| - 2.4e-19 69.7 0.0 9.3e-19 67.7 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|282162849|ref|YP_003355234.1| - 4.6e-06 26.8 2.8 1.2e-05 25.4 1.7 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|282162849|ref|YP_003355234.1| - 0.0042 17.0 0.0 0.023 14.6 0.0 2.2 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF4084 PF13321.6 gi|282162850|ref|YP_003355235.1| - 0.024 14.2 11.4 0.038 13.5 8.8 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4084) DUF4870 PF09685.10 gi|282162850|ref|YP_003355235.1| - 0.094 12.8 5.9 0.11 12.6 5.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4870) SCAMP PF04144.13 gi|282162850|ref|YP_003355235.1| - 0.095 13.0 5.1 0.11 12.7 5.1 1.1 1 0 0 1 1 1 0 SCAMP family PelG PF16933.5 gi|282162850|ref|YP_003355235.1| - 0.1 11.4 11.1 0.12 11.2 11.1 1.1 1 0 0 1 1 1 0 Putative exopolysaccharide Exporter (EPS-E) MFS_1 PF07690.16 gi|282162850|ref|YP_003355235.1| - 0.18 10.7 10.8 0.2 10.6 10.8 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily MARVEL PF01284.23 gi|282162850|ref|YP_003355235.1| - 0.56 10.2 8.1 0.75 9.8 8.1 1.2 1 0 0 1 1 1 0 Membrane-associating domain DUF1772 PF08592.11 gi|282162850|ref|YP_003355235.1| - 0.88 9.9 4.9 3 8.2 4.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) DUF805 PF05656.14 gi|282162850|ref|YP_003355235.1| - 1.3 9.5 6.1 3.8 8.0 6.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF2070 PF09843.9 gi|282162850|ref|YP_003355235.1| - 3.2 6.0 11.9 3.5 5.8 11.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Flavodoxin_3 PF12641.7 gi|282162851|ref|YP_003355236.1| - 4.8e-10 39.4 0.0 8.4e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain Fer4_10 PF13237.6 gi|282162851|ref|YP_003355236.1| - 3e-08 33.7 9.4 5.4e-08 32.8 9.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282162851|ref|YP_003355236.1| - 4.5e-08 32.6 5.6 0.00019 21.1 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Flavodoxin_5 PF12724.7 gi|282162851|ref|YP_003355236.1| - 2.3e-07 31.1 0.0 3.4e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|282162851|ref|YP_003355236.1| - 2.7e-07 30.9 0.0 5e-07 30.0 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin Fer4_7 PF12838.7 gi|282162851|ref|YP_003355236.1| - 8.4e-07 29.5 2.3 0.0091 16.6 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282162851|ref|YP_003355236.1| - 2.8e-05 24.0 10.0 0.031 14.3 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282162851|ref|YP_003355236.1| - 8e-05 22.7 9.6 0.0025 18.0 11.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282162851|ref|YP_003355236.1| - 0.00062 20.7 9.2 0.23 12.4 0.7 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|282162851|ref|YP_003355236.1| - 0.0015 19.3 14.1 0.043 14.8 3.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282162851|ref|YP_003355236.1| - 0.0026 18.3 3.4 0.18 12.4 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282162851|ref|YP_003355236.1| - 0.01 15.9 8.6 0.32 11.2 0.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|282162851|ref|YP_003355236.1| - 0.01 16.3 11.4 0.081 13.5 1.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282162851|ref|YP_003355236.1| - 0.037 14.2 9.0 0.088 13.0 9.0 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282162851|ref|YP_003355236.1| - 0.43 11.1 10.7 0.68 10.4 1.5 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282162851|ref|YP_003355236.1| - 1.1 9.5 7.8 71 3.6 8.2 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain NosD PF05048.13 gi|282162852|ref|YP_003355237.1| - 5.3e-28 97.9 12.7 8.4e-28 97.2 12.7 1.3 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|282162852|ref|YP_003355237.1| - 5.5e-14 52.3 18.0 1.1e-13 51.4 18.0 1.5 1 0 0 1 1 1 1 Right handed beta helix region PKD PF00801.20 gi|282162852|ref|YP_003355237.1| - 1e-13 50.9 1.4 1e-13 50.9 1.4 2.3 2 0 0 2 2 2 1 PKD domain Pectinesterase PF01095.19 gi|282162852|ref|YP_003355237.1| - 0.017 13.9 0.2 0.029 13.1 0.2 1.4 1 0 0 1 1 1 0 Pectinesterase Trypan_PARP PF05887.11 gi|282162852|ref|YP_003355237.1| - 0.017 15.1 0.9 0.017 15.1 0.9 2.0 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) MAGE_N PF12440.8 gi|282162852|ref|YP_003355237.1| - 0.53 11.0 5.7 1.3 9.7 5.7 1.6 1 0 0 1 1 1 0 Melanoma associated antigen family N terminal Med3 PF11593.8 gi|282162852|ref|YP_003355237.1| - 8.5 5.4 11.8 18 4.4 9.0 2.2 2 0 0 2 2 2 0 Mediator complex subunit 3 fungal PYC_OADA PF02436.18 gi|282162853|ref|YP_003355238.1| - 5.5e-51 173.2 0.3 9.1e-51 172.4 0.3 1.3 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|282162853|ref|YP_003355238.1| - 8.6e-46 156.6 0.0 1.3e-45 156.1 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|282162853|ref|YP_003355238.1| - 8.4e-20 70.4 6.3 1.6e-19 69.5 4.7 2.2 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|282162853|ref|YP_003355238.1| - 1.5e-09 37.6 3.6 1.3e-07 31.4 0.4 2.9 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 gi|282162853|ref|YP_003355238.1| - 3.9e-05 23.5 5.4 4.9e-05 23.2 3.0 2.2 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.6 gi|282162853|ref|YP_003355238.1| - 0.00017 22.2 1.2 0.06 14.1 0.1 3.0 2 0 0 2 2 2 1 HlyD family secretion protein GCV_H PF01597.19 gi|282162853|ref|YP_003355238.1| - 0.00082 19.3 5.2 0.12 12.3 0.6 3.0 3 1 1 4 4 4 2 Glycine cleavage H-protein HlyD_D23 PF16576.5 gi|282162853|ref|YP_003355238.1| - 0.0033 16.7 1.4 0.12 11.5 0.2 2.4 1 1 1 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion NQRA PF05896.11 gi|282162853|ref|YP_003355238.1| - 0.012 15.1 1.3 0.019 14.4 1.3 1.2 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PYNP_C PF07831.13 gi|282162853|ref|YP_003355238.1| - 0.015 14.9 0.5 0.056 13.1 0.3 2.1 2 1 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain TGT PF01702.18 gi|282162853|ref|YP_003355238.1| - 0.02 14.1 0.0 0.03 13.5 0.0 1.2 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase DUF2118 PF09891.9 gi|282162853|ref|YP_003355238.1| - 0.029 14.3 0.5 0.09 12.7 0.2 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) ADH_zinc_N PF00107.26 gi|282162853|ref|YP_003355238.1| - 0.031 14.3 0.1 0.97 9.4 0.1 2.9 2 1 1 3 3 3 0 Zinc-binding dehydrogenase YqfD PF06898.11 gi|282162853|ref|YP_003355238.1| - 0.11 11.3 3.9 0.14 11.0 2.2 1.9 2 1 0 2 2 2 0 Putative stage IV sporulation protein YqfD PASTA PF03793.19 gi|282162853|ref|YP_003355238.1| - 0.15 11.9 2.1 1.9 8.4 0.5 2.6 1 1 1 2 2 2 0 PASTA domain Peptidase_M23 PF01551.22 gi|282162853|ref|YP_003355238.1| - 0.21 11.8 2.5 0.74 10.1 0.4 2.4 1 1 1 2 2 2 0 Peptidase family M23 CPSase_L_D2 PF02786.17 gi|282162854|ref|YP_003355239.1| - 3.2e-78 262.1 0.0 4.9e-78 261.5 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|282162854|ref|YP_003355239.1| - 3.9e-45 152.9 0.0 9.1e-45 151.7 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|282162854|ref|YP_003355239.1| - 8.1e-42 141.7 0.0 1.6e-41 140.7 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain BPL_LplA_LipB PF03099.19 gi|282162854|ref|YP_003355239.1| - 4.9e-14 52.4 0.0 8.9e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Dala_Dala_lig_C PF07478.13 gi|282162854|ref|YP_003355239.1| - 2.3e-08 33.8 0.0 6.8e-08 32.3 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|282162854|ref|YP_003355239.1| - 5.1e-06 26.2 0.0 1.5e-05 24.7 0.0 1.9 1 0 0 1 1 1 1 ATP-grasp domain BPL_C PF02237.17 gi|282162854|ref|YP_003355239.1| - 0.0013 18.6 0.2 0.0029 17.5 0.2 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB_2 PF16917.5 gi|282162854|ref|YP_003355239.1| - 0.018 14.6 0.0 0.039 13.5 0.0 1.7 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family GARS_A PF01071.19 gi|282162854|ref|YP_003355239.1| - 0.025 14.4 0.0 0.05 13.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PrsW-protease PF13367.6 gi|282162856|ref|YP_003355241.1| - 1.7e-40 138.6 18.9 1.7e-40 138.6 18.9 2.6 2 1 0 2 2 2 1 PrsW family intramembrane metalloprotease Glycophorin_A PF01102.18 gi|282162856|ref|YP_003355241.1| - 0.83 9.9 0.0 0.83 9.9 0.0 2.5 2 0 0 2 2 2 0 Glycophorin A Pro_isomerase PF00160.21 gi|282162857|ref|YP_003355242.1| - 1.9e-47 161.5 0.3 2.3e-47 161.2 0.3 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Fe-ADH_2 PF13685.6 gi|282162859|ref|YP_003355244.1| - 6.7e-75 252.0 1.9 8.6e-75 251.7 1.9 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|282162859|ref|YP_003355244.1| - 8.9e-26 90.5 4.2 2.8e-24 85.6 4.2 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|282162859|ref|YP_003355244.1| - 8.5e-06 25.1 0.4 9.8e-05 21.6 0.4 2.6 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF63 PF01889.17 gi|282162860|ref|YP_003355245.1| - 6.8e-96 321.6 26.0 7.9e-96 321.4 26.0 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF4381 PF14316.6 gi|282162860|ref|YP_003355245.1| - 0.07 13.4 0.0 0.07 13.4 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4381) SpoIIM PF01944.17 gi|282162861|ref|YP_003355246.1| - 1.1e-34 119.7 21.7 1.4e-34 119.4 21.7 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M SpoIIM PF01944.17 gi|282162862|ref|YP_003355247.1| - 2.9e-35 121.6 18.6 3.7e-35 121.3 18.6 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M Bestrophin PF01062.21 gi|282162862|ref|YP_003355247.1| - 0.065 12.6 0.2 0.12 11.7 0.2 1.4 1 0 0 1 1 1 0 Bestrophin, RFP-TM, chloride channel Smim3 PF17307.2 gi|282162862|ref|YP_003355247.1| - 0.32 10.5 2.0 0.86 9.1 0.2 2.4 2 0 0 2 2 2 0 Small integral membrane protein 3 NadA PF02445.16 gi|282162863|ref|YP_003355248.1| - 6.5e-115 383.4 0.2 7.4e-115 383.2 0.2 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sigma70_r4_2 PF08281.12 gi|282162863|ref|YP_003355248.1| - 0.03 14.0 0.0 0.058 13.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HypD PF01924.16 gi|282162864|ref|YP_003355249.1| - 2.7e-136 454.3 0.5 3.2e-136 454.1 0.5 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family baeRF_family5 PF18846.1 gi|282162864|ref|YP_003355249.1| - 0.15 12.3 0.1 0.25 11.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 5 EF1_GNE PF00736.19 gi|282162866|ref|YP_003355251.1| - 2e-18 66.4 0.2 2.1e-18 66.2 0.2 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain KIX_2 PF16987.5 gi|282162866|ref|YP_003355251.1| - 0.13 12.3 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 KIX domain DUF1610 PF07754.11 gi|282162867|ref|YP_003355252.1| - 3.6e-06 26.8 3.3 3.6e-06 26.8 3.3 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF1610) DZR PF12773.7 gi|282162867|ref|YP_003355252.1| - 0.00015 21.7 10.3 0.014 15.4 10.3 2.1 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|282162867|ref|YP_003355252.1| - 0.0035 17.0 17.4 0.076 12.8 0.3 3.4 2 2 0 2 2 2 2 zinc-ribbon domain zf-CHY PF05495.12 gi|282162867|ref|YP_003355252.1| - 0.0059 17.1 8.4 0.039 14.4 8.4 1.9 1 1 0 1 1 1 1 CHY zinc finger zf-ribbon_3 PF13248.6 gi|282162867|ref|YP_003355252.1| - 0.0071 15.7 14.2 0.3 10.5 0.4 3.5 3 1 0 3 3 3 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|282162867|ref|YP_003355252.1| - 0.0084 16.0 9.8 0.056 13.4 0.9 2.1 1 1 1 2 2 2 2 Putative transposase DNA-binding domain Rhodanese_C PF12368.8 gi|282162867|ref|YP_003355252.1| - 0.01 16.2 7.2 0.011 16.1 7.2 1.1 1 0 0 1 1 1 0 Rhodanase C-terminal zf-ACC PF17848.1 gi|282162867|ref|YP_003355252.1| - 0.013 15.6 4.8 0.25 11.4 0.2 3.7 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain FYVE_2 PF02318.16 gi|282162867|ref|YP_003355252.1| - 0.038 14.2 5.0 0.046 13.9 5.0 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger DUF4428 PF14471.6 gi|282162867|ref|YP_003355252.1| - 0.057 13.3 5.1 0.093 12.7 5.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) HypA PF01155.19 gi|282162867|ref|YP_003355252.1| - 0.069 13.2 10.5 0.14 12.2 0.5 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|282162867|ref|YP_003355252.1| - 0.074 13.0 9.0 0.23 11.5 9.0 1.8 1 1 0 1 1 1 0 zinc-ribbons zf-C2HC5 PF06221.13 gi|282162867|ref|YP_003355252.1| - 0.099 12.6 1.0 0.099 12.6 1.0 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zinc_ribbon_10 PF10058.9 gi|282162867|ref|YP_003355252.1| - 0.15 11.8 13.6 1.6 8.5 1.6 3.4 2 2 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-Mss51 PF13824.6 gi|282162867|ref|YP_003355252.1| - 0.24 11.5 11.6 2.6 8.2 3.3 2.5 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HIT PF04438.16 gi|282162867|ref|YP_003355252.1| - 0.25 11.3 14.9 1 9.3 5.4 2.9 1 1 1 2 2 2 0 HIT zinc finger Zn_Tnp_IS91 PF14319.6 gi|282162867|ref|YP_003355252.1| - 0.34 11.0 10.3 0.54 10.3 10.3 1.4 1 1 0 1 1 1 0 Transposase zinc-binding domain Prok-RING_1 PF14446.6 gi|282162867|ref|YP_003355252.1| - 0.37 10.8 10.3 6.1 6.9 4.8 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 C1_1 PF00130.22 gi|282162867|ref|YP_003355252.1| - 0.58 10.1 9.5 0.23 11.4 0.6 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Nudix_N_2 PF14803.6 gi|282162867|ref|YP_003355252.1| - 0.66 9.9 14.5 3 7.9 2.8 3.6 2 1 0 3 3 3 0 Nudix N-terminal DUF1272 PF06906.11 gi|282162867|ref|YP_003355252.1| - 0.68 10.1 10.2 15 5.8 10.2 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) DUF2752 PF10825.8 gi|282162867|ref|YP_003355252.1| - 0.99 9.5 6.2 6.8 6.8 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) Zn-ribbon_8 PF09723.10 gi|282162867|ref|YP_003355252.1| - 1 9.5 15.1 1.5 9.0 2.6 3.0 1 1 2 3 3 3 0 Zinc ribbon domain PolC_DP2 PF03833.13 gi|282162867|ref|YP_003355252.1| - 1.2 7.0 5.6 1.3 6.8 5.6 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Auto_anti-p27 PF06677.12 gi|282162867|ref|YP_003355252.1| - 1.6 8.9 11.5 0.95 9.7 1.9 2.5 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NRDD PF13597.6 gi|282162867|ref|YP_003355252.1| - 1.9 7.2 10.5 0.44 9.3 0.5 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-H2C2_2 PF13465.6 gi|282162867|ref|YP_003355252.1| - 2.1 9.0 12.4 8.1 7.1 0.1 3.6 3 1 1 4 4 4 0 Zinc-finger double domain zf-tcix PF14952.6 gi|282162867|ref|YP_003355252.1| - 2.3 7.9 18.2 3 7.6 7.1 3.1 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding TFIIS_C PF01096.18 gi|282162867|ref|YP_003355252.1| - 2.5 8.0 13.3 7.6 6.5 0.1 3.9 3 1 1 4 4 4 0 Transcription factor S-II (TFIIS) zf-LITAF-like PF10601.9 gi|282162867|ref|YP_003355252.1| - 2.9 8.2 11.8 1.1 9.6 2.1 3.2 1 1 1 3 3 3 0 LITAF-like zinc ribbon domain Nop10p PF04135.12 gi|282162867|ref|YP_003355252.1| - 4.3 7.5 8.3 5.6 7.1 1.6 2.7 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family Rubredoxin_2 PF18073.1 gi|282162867|ref|YP_003355252.1| - 5.4 6.8 21.3 1.3 8.9 0.2 3.9 3 1 0 3 3 3 0 Rubredoxin metal binding domain Rubredoxin PF00301.20 gi|282162867|ref|YP_003355252.1| - 5.9 7.0 11.8 7.6 6.6 0.3 3.1 2 1 1 3 3 3 0 Rubredoxin NMD3 PF04981.13 gi|282162867|ref|YP_003355252.1| - 6.2 6.2 8.5 7.5 5.9 8.5 1.0 1 0 0 1 1 1 0 NMD3 family zinc_ribbon_4 PF13717.6 gi|282162867|ref|YP_003355252.1| - 7.3 6.6 17.4 2 8.4 0.3 3.8 3 1 1 4 4 4 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|282162867|ref|YP_003355252.1| - 8.6 6.1 15.4 5.4 6.8 0.3 3.9 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Arginosuc_synth PF00764.19 gi|282162868|ref|YP_003355253.1| - 4.2e-173 576.1 0.0 4.8e-173 575.9 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|282162868|ref|YP_003355253.1| - 0.001 18.6 0.0 0.0025 17.3 0.0 1.6 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|282162868|ref|YP_003355253.1| - 0.045 12.9 0.0 0.069 12.3 0.0 1.3 1 0 0 1 1 1 0 NAD synthase CPSase_L_D2 PF02786.17 gi|282162870|ref|YP_003355255.1| - 6.9e-107 355.7 0.2 1.8e-70 236.7 0.0 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|282162870|ref|YP_003355255.1| - 2.9e-41 140.6 0.0 7.1e-41 139.4 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|282162870|ref|YP_003355255.1| - 5.9e-22 77.7 0.6 5.6e-20 71.3 0.0 3.9 4 0 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.22 gi|282162870|ref|YP_003355255.1| - 2e-18 66.5 0.1 5.1e-10 39.2 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|282162870|ref|YP_003355255.1| - 8.7e-18 64.3 0.0 8.6e-08 32.0 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|282162870|ref|YP_003355255.1| - 3.7e-15 56.0 0.0 4.9e-08 32.8 0.1 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|282162870|ref|YP_003355255.1| - 4e-12 46.5 0.1 1.9e-06 28.0 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Mur_ligase PF01225.25 gi|282162870|ref|YP_003355255.1| - 0.001 19.4 0.4 3.4 8.1 0.0 4.1 4 1 0 4 4 4 1 Mur ligase family, catalytic domain ATP-grasp_2 PF08442.10 gi|282162870|ref|YP_003355255.1| - 0.053 13.1 0.0 2.2 7.8 0.0 2.7 3 0 0 3 3 3 0 ATP-grasp domain Jag_N PF14804.6 gi|282162870|ref|YP_003355255.1| - 0.08 13.3 0.6 0.49 10.8 0.0 2.8 3 0 0 3 3 2 0 Jag N-terminus DUF2007 PF09413.10 gi|282162870|ref|YP_003355255.1| - 0.12 12.6 0.3 95 3.3 0.0 4.0 4 0 0 4 4 4 0 Putative prokaryotic signal transducing protein TBP PF00352.21 gi|282162870|ref|YP_003355255.1| - 0.12 12.3 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Transcription factor TFIID (or TATA-binding protein, TBP) GATase PF00117.28 gi|282162871|ref|YP_003355256.1| - 1.3e-45 155.6 0.0 1.7e-45 155.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CPSase_sm_chain PF00988.22 gi|282162871|ref|YP_003355256.1| - 2.7e-45 153.3 0.0 4.6e-45 152.6 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain Peptidase_C26 PF07722.13 gi|282162871|ref|YP_003355256.1| - 1.2e-08 35.0 0.1 0.0014 18.4 0.2 2.2 1 1 1 2 2 2 2 Peptidase C26 F_bP_aldolase PF01116.20 gi|282162872|ref|YP_003355257.1| - 2.2e-103 345.6 0.8 3.7e-101 338.3 0.8 2.0 1 1 0 1 1 1 1 Fructose-bisphosphate aldolase class-II PFK PF00365.20 gi|282162873|ref|YP_003355258.1| - 8.8e-98 327.1 1.0 1.2e-97 326.7 1.0 1.2 1 0 0 1 1 1 1 Phosphofructokinase DUF4107 PF13389.6 gi|282162873|ref|YP_003355258.1| - 0.14 12.3 0.4 0.45 10.6 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4107) NRD1_2 PF01995.16 gi|282162873|ref|YP_003355258.1| - 0.17 11.2 0.1 0.36 10.1 0.0 1.6 2 0 0 2 2 2 0 NrpR regulatory domains NRD1 and 2 SGL PF08450.12 gi|282162874|ref|YP_003355259.1| - 2.8e-13 50.0 0.3 0.00044 19.9 0.0 4.6 1 1 3 5 5 5 3 SMP-30/Gluconolactonase/LRE-like region Reg_prop PF07494.11 gi|282162874|ref|YP_003355259.1| - 1.9e-10 39.7 4.4 0.25 11.7 0.0 6.3 6 0 0 6 6 6 3 Two component regulator propeller NHL PF01436.21 gi|282162874|ref|YP_003355259.1| - 1.9e-05 24.4 1.8 0.011 15.7 0.0 4.8 5 1 0 5 5 5 1 NHL repeat MRJP PF03022.16 gi|282162874|ref|YP_003355259.1| - 0.00034 20.1 1.5 0.22 10.9 0.0 3.7 2 2 2 4 4 4 2 Major royal jelly protein DUF5074 PF16819.5 gi|282162874|ref|YP_003355259.1| - 0.0007 19.6 0.2 10 6.2 0.0 4.1 3 2 1 4 4 4 2 Domain of unknown function (DUF5074) ATPgrasp_YheCD PF14398.6 gi|282162874|ref|YP_003355259.1| - 0.057 12.7 0.3 6.6 5.9 0.0 2.8 4 0 0 4 4 4 0 YheC/D like ATP-grasp PGF-CTERM PF18204.1 gi|282162874|ref|YP_003355259.1| - 0.092 12.7 0.4 0.092 12.7 0.4 1.7 2 0 0 2 2 2 0 PGF-CTERM motif Met_10 PF02475.16 gi|282162875|ref|YP_003355260.1| - 9.4e-60 201.8 0.0 1.2e-59 201.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|282162875|ref|YP_003355260.1| - 0.0046 16.6 0.0 0.0069 16.0 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.16 gi|282162875|ref|YP_003355260.1| - 0.025 13.8 0.0 0.034 13.3 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|282162875|ref|YP_003355260.1| - 0.034 13.7 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|282162875|ref|YP_003355260.1| - 0.051 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain NMD3 PF04981.13 gi|282162876|ref|YP_003355261.1| - 2.4e-56 190.9 0.4 3e-56 190.6 0.4 1.1 1 0 0 1 1 1 1 NMD3 family zf-NADH-PPase PF09297.11 gi|282162876|ref|YP_003355261.1| - 0.015 14.9 0.3 0.054 13.2 0.3 1.9 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|282162876|ref|YP_003355261.1| - 1.8 8.7 5.6 2.8 8.2 0.4 2.7 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.7 gi|282162876|ref|YP_003355261.1| - 9 6.4 8.9 14 5.8 6.4 2.4 2 1 0 2 2 2 0 Double zinc ribbon Adenine_glyco PF03352.13 gi|282162877|ref|YP_003355262.1| - 0.045 13.5 0.0 0.085 12.6 0.0 1.4 1 1 0 1 1 1 0 Methyladenine glycosylase rve PF00665.26 gi|282162878|ref|YP_003355263.1| - 6.4e-30 103.8 0.0 1.1e-29 103.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|282162878|ref|YP_003355263.1| - 3.2e-18 65.3 0.1 5.5e-18 64.5 0.1 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 gi|282162878|ref|YP_003355263.1| - 6.4e-14 51.8 2.4 6.4e-14 51.8 2.4 1.8 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.6 gi|282162878|ref|YP_003355263.1| - 8.2e-07 29.1 2.6 8.2e-07 29.1 2.6 1.8 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 gi|282162878|ref|YP_003355263.1| - 8.9e-06 26.0 0.2 1.3e-05 25.4 0.2 1.3 1 0 0 1 1 1 1 DDE domain HTH_29 PF13551.6 gi|282162878|ref|YP_003355263.1| - 0.014 15.4 0.5 0.058 13.4 0.0 2.2 3 0 0 3 3 3 0 Winged helix-turn helix HTH_28 PF13518.6 gi|282162878|ref|YP_003355263.1| - 0.06 13.5 0.7 0.24 11.5 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|282162878|ref|YP_003355263.1| - 0.091 12.9 0.1 0.46 10.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_Tnp_1 PF01527.20 gi|282162879|ref|YP_003355264.1| - 1.8e-13 50.6 1.9 2.3e-13 50.2 1.9 1.2 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 gi|282162879|ref|YP_003355264.1| - 4e-06 26.9 0.0 7.5e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|282162879|ref|YP_003355264.1| - 6e-05 22.4 0.1 0.00023 20.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|282162879|ref|YP_003355264.1| - 0.0033 17.2 0.0 0.0086 15.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|282162879|ref|YP_003355264.1| - 0.0045 17.0 0.1 0.0045 17.0 0.1 1.5 2 0 0 2 2 2 1 Winged helix-turn helix Frankia_peptide PF14407.6 gi|282162879|ref|YP_003355264.1| - 0.0068 16.4 0.2 0.065 13.2 0.1 2.1 2 0 0 2 2 2 1 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. NRBF2 PF08961.10 gi|282162879|ref|YP_003355264.1| - 0.013 15.1 1.5 0.014 15.0 1.5 1.1 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator CENP-B_N PF04218.13 gi|282162879|ref|YP_003355264.1| - 0.037 13.7 0.1 0.081 12.6 0.0 1.6 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain DUF433 PF04255.14 gi|282162879|ref|YP_003355264.1| - 0.16 11.8 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Glycos_transf_2 PF00535.26 gi|282162880|ref|YP_003355265.1| - 2.1e-30 105.8 0.0 2.9e-30 105.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282162880|ref|YP_003355265.1| - 8.2e-25 88.0 0.0 1e-24 87.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|282162880|ref|YP_003355265.1| - 2.1e-11 43.8 0.0 4.4e-11 42.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|282162880|ref|YP_003355265.1| - 7.7e-11 42.3 0.0 1e-10 41.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|282162880|ref|YP_003355265.1| - 1e-10 41.4 0.0 1.5e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|282162880|ref|YP_003355265.1| - 0.0045 17.5 0.0 0.0091 16.5 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.6 gi|282162880|ref|YP_003355265.1| - 0.042 13.5 0.0 0.096 12.4 0.0 1.7 1 1 0 1 1 1 0 Glycosyltransferase like family Fe_dep_repr_C PF02742.15 gi|282162881|ref|YP_003355266.1| - 1.9e-28 98.4 1.1 3.1e-28 97.6 0.3 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|282162881|ref|YP_003355266.1| - 4.4e-21 74.8 1.4 2e-20 72.7 0.3 2.4 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|282162881|ref|YP_003355266.1| - 6.4e-13 48.8 0.0 3.6e-12 46.4 0.0 2.0 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.7 gi|282162881|ref|YP_003355266.1| - 8.9e-08 31.9 0.0 9.5e-07 28.6 0.0 2.5 3 0 0 3 3 3 1 MarR family HTH_IclR PF09339.10 gi|282162881|ref|YP_003355266.1| - 2.3e-06 27.3 0.0 1.3e-05 24.9 0.0 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|282162881|ref|YP_003355266.1| - 2.8e-06 27.1 0.0 9.1e-06 25.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|282162881|ref|YP_003355266.1| - 1.9e-05 24.5 0.0 0.00013 21.8 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|282162881|ref|YP_003355266.1| - 3.3e-05 23.8 0.0 9.4e-05 22.3 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|282162881|ref|YP_003355266.1| - 4.6e-05 22.9 0.0 9.6e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|282162881|ref|YP_003355266.1| - 8.3e-05 22.9 0.0 0.00023 21.4 0.0 1.8 2 0 0 2 2 1 1 Transcriptional regulator HTH_27 PF13463.6 gi|282162881|ref|YP_003355266.1| - 0.00059 20.3 0.0 0.0014 19.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|282162881|ref|YP_003355266.1| - 0.00074 19.4 0.0 0.0015 18.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|282162881|ref|YP_003355266.1| - 0.0023 17.6 0.0 0.0045 16.7 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_10 PF04967.12 gi|282162881|ref|YP_003355266.1| - 0.0027 17.5 0.0 0.0082 15.9 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r3 PF04539.16 gi|282162881|ref|YP_003355266.1| - 0.0043 17.1 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_36 PF13730.6 gi|282162881|ref|YP_003355266.1| - 0.0094 15.9 0.0 0.033 14.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain FaeA PF04703.12 gi|282162881|ref|YP_003355266.1| - 0.015 15.7 0.0 0.036 14.4 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein GntR PF00392.21 gi|282162881|ref|YP_003355266.1| - 0.017 14.8 0.0 0.048 13.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|282162881|ref|YP_003355266.1| - 0.019 15.0 0.0 0.16 12.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|282162881|ref|YP_003355266.1| - 0.024 14.3 0.1 0.059 13.0 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_12 PF08461.10 gi|282162881|ref|YP_003355266.1| - 0.079 12.9 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_34 PF13601.6 gi|282162881|ref|YP_003355266.1| - 0.094 12.9 0.1 0.4 10.9 0.1 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|282162881|ref|YP_003355266.1| - 0.11 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TFIIE_alpha PF02002.17 gi|282162881|ref|YP_003355266.1| - 0.13 12.2 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit FeoB_N PF02421.18 gi|282162882|ref|YP_003355267.1| - 1.6e-54 183.7 0.0 2.4e-54 183.1 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|282162882|ref|YP_003355267.1| - 7.3e-23 81.0 20.4 3.8e-13 49.7 8.5 3.1 4 0 0 4 4 4 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|282162882|ref|YP_003355267.1| - 3.8e-19 68.9 0.0 6.5e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|282162882|ref|YP_003355267.1| - 1e-14 53.9 0.6 1e-14 53.9 0.6 3.8 3 1 1 4 4 4 1 Ferrous iron transport protein B C terminus SRPRB PF09439.10 gi|282162882|ref|YP_003355267.1| - 0.00085 18.8 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit DUF99 PF01949.16 gi|282162882|ref|YP_003355267.1| - 0.014 14.8 0.0 0.031 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF99 FeoB_Cyto PF17910.1 gi|282162882|ref|YP_003355267.1| - 0.019 15.5 0.0 0.034 14.7 0.0 1.4 1 0 0 1 1 1 0 FeoB cytosolic helical domain Roc PF08477.13 gi|282162882|ref|YP_003355267.1| - 0.042 14.1 0.0 0.069 13.4 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|282162882|ref|YP_003355267.1| - 0.14 12.0 0.1 0.38 10.5 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|282162883|ref|YP_003355268.1| - 2.2e-37 128.6 0.0 1.8e-18 67.4 0.0 2.7 2 1 0 2 2 2 2 ABC transporter RLI PF04068.15 gi|282162883|ref|YP_003355268.1| - 1.5e-12 47.1 3.4 3.6e-12 45.9 3.4 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.19 gi|282162883|ref|YP_003355268.1| - 1.8e-12 47.2 8.2 5.7e-05 22.6 1.9 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.27 gi|282162883|ref|YP_003355268.1| - 3.8e-08 32.8 3.8 3.8e-08 32.8 3.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_21 PF13304.6 gi|282162883|ref|YP_003355268.1| - 1.3e-07 31.8 2.3 0.073 12.9 0.0 4.2 3 1 1 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system Fer4_6 PF12837.7 gi|282162883|ref|YP_003355268.1| - 1.1e-06 28.4 12.3 1.6e-06 27.9 2.7 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain NACHT PF05729.12 gi|282162883|ref|YP_003355268.1| - 9.2e-05 22.4 0.0 0.038 13.9 0.0 2.4 2 0 0 2 2 2 1 NACHT domain Fer4_9 PF13187.6 gi|282162883|ref|YP_003355268.1| - 0.0001 22.4 9.5 0.0002 21.5 9.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA PF00004.29 gi|282162883|ref|YP_003355268.1| - 0.00011 22.6 0.1 0.076 13.4 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Fer4_21 PF14697.6 gi|282162883|ref|YP_003355268.1| - 0.00012 22.2 10.2 0.00021 21.4 10.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282162883|ref|YP_003355268.1| - 0.00018 21.5 11.0 0.00083 19.4 1.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282162883|ref|YP_003355268.1| - 0.00036 20.5 1.6 0.00036 20.5 1.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_24 PF13479.6 gi|282162883|ref|YP_003355268.1| - 0.00041 20.1 0.0 0.17 11.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|282162883|ref|YP_003355268.1| - 0.00043 20.6 0.1 0.34 11.3 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_22 PF13401.6 gi|282162883|ref|YP_003355268.1| - 0.00046 20.5 0.0 0.014 15.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|282162883|ref|YP_003355268.1| - 0.00059 20.3 0.2 0.072 13.5 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|282162883|ref|YP_003355268.1| - 0.0006 20.0 0.4 0.091 12.9 0.0 3.0 4 0 0 4 4 2 1 AAA domain NB-ARC PF00931.22 gi|282162883|ref|YP_003355268.1| - 0.00063 19.0 0.2 0.71 9.0 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Fer4_7 PF12838.7 gi|282162883|ref|YP_003355268.1| - 0.00084 19.9 10.0 0.0019 18.7 10.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain SRP54 PF00448.22 gi|282162883|ref|YP_003355268.1| - 0.0017 18.0 0.5 0.34 10.5 0.0 2.7 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|282162883|ref|YP_003355268.1| - 0.0032 17.4 0.2 1.9 8.4 0.0 2.5 2 1 0 2 2 2 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|282162883|ref|YP_003355268.1| - 0.0032 17.4 0.1 0.48 10.3 0.0 2.5 2 0 0 2 2 2 1 RsgA GTPase AAA_18 PF13238.6 gi|282162883|ref|YP_003355268.1| - 0.0047 17.5 1.5 1.8 9.1 0.3 3.0 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|282162883|ref|YP_003355268.1| - 0.0072 16.3 0.1 1.4 8.9 0.0 3.3 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 gi|282162883|ref|YP_003355268.1| - 0.0078 16.0 0.1 1.7 8.3 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain Fer4_16 PF13484.6 gi|282162883|ref|YP_003355268.1| - 0.013 16.4 2.2 0.013 16.4 2.2 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain AAA_25 PF13481.6 gi|282162883|ref|YP_003355268.1| - 0.042 13.4 1.4 4.5 6.8 0.0 3.5 3 1 1 4 4 4 0 AAA domain AAA_14 PF13173.6 gi|282162883|ref|YP_003355268.1| - 0.046 13.7 3.9 2.6 8.1 0.0 3.6 3 1 0 3 3 2 0 AAA domain PhoH PF02562.16 gi|282162883|ref|YP_003355268.1| - 0.049 13.1 0.3 0.64 9.4 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein SbcCD_C PF13558.6 gi|282162883|ref|YP_003355268.1| - 0.071 13.4 0.0 27 5.1 0.0 3.1 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|282162883|ref|YP_003355268.1| - 0.077 12.8 0.3 3.7 7.4 0.0 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF87 PF01935.17 gi|282162883|ref|YP_003355268.1| - 0.11 12.5 4.2 6 6.9 0.0 2.9 4 0 0 4 4 2 0 Helicase HerA, central domain AAA_23 PF13476.6 gi|282162883|ref|YP_003355268.1| - 0.15 12.6 3.7 2.1 8.8 0.0 2.5 2 1 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|282162883|ref|YP_003355268.1| - 0.19 11.4 2.0 1.4 8.6 0.0 2.7 3 0 0 3 3 2 0 Holliday junction DNA helicase RuvB P-loop domain Thymidylate_kin PF02223.17 gi|282162883|ref|YP_003355268.1| - 0.2 11.3 0.8 25 4.5 0.0 2.8 3 0 0 3 3 3 0 Thymidylate kinase AAA_30 PF13604.6 gi|282162883|ref|YP_003355268.1| - 0.27 10.9 1.2 17 5.1 0.1 2.6 2 1 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|282162883|ref|YP_003355268.1| - 0.41 9.6 1.9 8.8 5.2 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|282162883|ref|YP_003355268.1| - 0.45 10.6 2.9 1.5 8.9 0.1 2.9 2 2 0 2 2 2 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|282162883|ref|YP_003355268.1| - 2.2 8.1 4.4 9.2 6.1 0.0 3.1 4 0 0 4 4 2 0 NTPase Fer4_4 PF12800.7 gi|282162883|ref|YP_003355268.1| - 2.7 8.7 14.3 0.25 11.9 3.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282162883|ref|YP_003355268.1| - 5.8 7.5 10.9 69 4.1 10.9 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain F420_oxidored PF03807.17 gi|282162885|ref|YP_003355270.1| - 6.3e-20 71.6 0.4 1.1e-19 70.8 0.4 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|282162885|ref|YP_003355270.1| - 2.8e-05 24.1 0.1 4e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|282162885|ref|YP_003355270.1| - 0.00016 21.3 0.3 0.00023 20.8 0.3 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.24 gi|282162885|ref|YP_003355270.1| - 0.00068 20.1 0.3 0.0014 19.0 0.2 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|282162885|ref|YP_003355270.1| - 0.00098 19.4 0.1 0.0021 18.3 0.2 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|282162885|ref|YP_003355270.1| - 0.0067 16.5 0.2 0.012 15.7 0.2 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase KR PF08659.10 gi|282162885|ref|YP_003355270.1| - 0.022 14.7 0.2 0.03 14.2 0.2 1.2 1 0 0 1 1 1 0 KR domain TrkA_N PF02254.18 gi|282162885|ref|YP_003355270.1| - 0.03 14.6 0.2 0.095 13.0 0.2 1.8 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_2 PF03446.15 gi|282162885|ref|YP_003355270.1| - 0.031 14.4 0.1 0.048 13.8 0.1 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Ldh_1_N PF00056.23 gi|282162885|ref|YP_003355270.1| - 0.06 13.4 0.8 0.14 12.2 0.8 1.6 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain adh_short PF00106.25 gi|282162885|ref|YP_003355270.1| - 0.12 11.9 0.1 0.23 10.9 0.1 1.5 2 0 0 2 2 2 0 short chain dehydrogenase HhH-GPD PF00730.25 gi|282162886|ref|YP_003355271.1| - 1.7e-14 54.2 0.0 2.3e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|282162886|ref|YP_003355271.1| - 3.2e-06 26.7 0.1 1.4e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|282162886|ref|YP_003355271.1| - 0.0006 20.4 0.2 0.39 11.3 0.0 3.0 3 0 0 3 3 3 2 Helix-hairpin-helix domain HHH_8 PF14716.6 gi|282162886|ref|YP_003355271.1| - 0.065 13.6 0.0 0.19 12.1 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain ParA PF10609.9 gi|282162887|ref|YP_003355272.1| - 2e-88 296.0 1.6 2.5e-88 295.7 1.6 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|282162887|ref|YP_003355272.1| - 1.7e-18 66.9 0.0 4.3e-18 65.6 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|282162887|ref|YP_003355272.1| - 8.3e-12 45.4 0.4 3.5e-11 43.3 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_26 PF13500.6 gi|282162887|ref|YP_003355272.1| - 2.5e-07 30.7 1.4 0.0014 18.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 gi|282162887|ref|YP_003355272.1| - 3.5e-06 26.4 0.7 3.5e-06 26.4 0.7 1.8 2 1 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|282162887|ref|YP_003355272.1| - 2.6e-05 23.6 0.1 3.7e-05 23.2 0.1 1.4 1 1 0 1 1 1 1 ATPase MipZ MeaB PF03308.16 gi|282162887|ref|YP_003355272.1| - 0.00053 19.0 0.2 0.00097 18.2 0.2 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_NifH PF00142.18 gi|282162887|ref|YP_003355272.1| - 0.00062 19.3 0.8 0.013 14.9 0.1 2.4 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|282162887|ref|YP_003355272.1| - 0.014 14.9 0.3 0.06 12.8 0.2 1.8 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ AAA_25 PF13481.6 gi|282162887|ref|YP_003355272.1| - 0.022 14.3 0.1 0.048 13.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|282162887|ref|YP_003355272.1| - 0.029 14.3 0.7 0.14 12.1 0.1 2.0 2 0 0 2 2 2 0 RsgA GTPase AAA_30 PF13604.6 gi|282162887|ref|YP_003355272.1| - 0.038 13.7 0.5 0.073 12.8 0.2 1.5 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|282162887|ref|YP_003355272.1| - 0.11 12.3 0.3 0.25 11.1 0.1 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|282162887|ref|YP_003355272.1| - 0.11 12.4 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase SRP54 PF00448.22 gi|282162887|ref|YP_003355272.1| - 0.15 11.6 0.1 0.31 10.7 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain VirC1 PF07015.11 gi|282162887|ref|YP_003355272.1| - 0.16 11.2 0.1 0.27 10.5 0.1 1.3 1 0 0 1 1 1 0 VirC1 protein HMG-CoA_red PF00368.18 gi|282162888|ref|YP_003355273.1| - 2e-116 389.0 3.8 2.4e-116 388.7 3.8 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase HTH_42 PF06224.12 gi|282162889|ref|YP_003355274.1| - 1.2e-43 150.0 0.8 1.3e-43 149.8 0.8 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF5532 PF17673.1 gi|282162889|ref|YP_003355274.1| - 0.067 13.3 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5532) tRNA-synt_1 PF00133.22 gi|282162890|ref|YP_003355275.1| - 2.4e-189 630.5 0.7 1.1e-108 364.1 0.0 2.4 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|282162890|ref|YP_003355275.1| - 4.5e-33 114.4 2.2 9.8e-33 113.3 2.2 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|282162890|ref|YP_003355275.1| - 3.8e-24 85.2 0.1 1.1e-09 37.6 0.0 3.7 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|282162890|ref|YP_003355275.1| - 6.9e-06 25.6 0.0 3.6e-05 23.3 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|282162890|ref|YP_003355275.1| - 4.9e-05 22.4 0.0 0.001 18.1 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class I (K) IBR PF01485.21 gi|282162890|ref|YP_003355275.1| - 0.89 9.8 4.5 0.79 10.0 0.0 2.8 3 0 0 3 3 3 0 IBR domain, a half RING-finger domain MAF_flag10 PF01973.18 gi|282162891|ref|YP_003355276.1| - 6.5e-34 117.1 0.0 8.2e-34 116.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 DUF1427 PF07235.11 gi|282162892|ref|YP_003355277.1| - 4.6 7.3 8.3 2.7 8.0 0.3 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1427) Semialdhyde_dhC PF02774.18 gi|282162893|ref|YP_003355278.1| - 1.1e-42 146.3 0.0 1.8e-42 145.5 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|282162893|ref|YP_003355278.1| - 2.3e-34 118.4 0.0 5.4e-34 117.2 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DXP_reductoisom PF02670.16 gi|282162893|ref|YP_003355278.1| - 0.0031 18.2 0.0 0.0066 17.2 0.0 1.7 1 1 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.6 gi|282162893|ref|YP_003355278.1| - 0.0041 17.0 0.1 0.0068 16.3 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding DapB_N PF01113.20 gi|282162893|ref|YP_003355278.1| - 0.0078 16.3 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|282162893|ref|YP_003355278.1| - 0.026 14.8 0.0 0.054 13.7 0.0 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Gp_dh_C PF02800.20 gi|282162893|ref|YP_003355278.1| - 0.092 12.3 0.0 0.32 10.6 0.0 2.0 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Fer4 PF00037.27 gi|282162894|ref|YP_003355279.1| - 7.7e-18 63.5 19.1 4.3e-09 35.8 6.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282162894|ref|YP_003355279.1| - 3.5e-16 58.5 18.5 3.6e-08 33.2 5.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282162894|ref|YP_003355279.1| - 8.9e-15 55.0 26.2 4.2e-11 43.3 14.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282162894|ref|YP_003355279.1| - 2.9e-13 49.7 27.2 2e-09 37.4 15.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282162894|ref|YP_003355279.1| - 3.3e-13 48.8 15.0 3.8e-07 29.8 3.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282162894|ref|YP_003355279.1| - 2.5e-12 46.8 27.2 9.1e-09 35.4 15.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282162894|ref|YP_003355279.1| - 5.9e-11 43.1 13.4 3.1e-05 24.8 3.8 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|282162894|ref|YP_003355279.1| - 2.4e-10 40.1 14.6 8.1e-06 25.9 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282162894|ref|YP_003355279.1| - 3.6e-10 39.8 14.0 1e-09 38.4 13.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|282162894|ref|YP_003355279.1| - 2.2e-06 28.4 8.0 0.0017 19.2 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282162894|ref|YP_003355279.1| - 3.8e-06 27.5 17.1 0.00096 19.8 5.0 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|282162894|ref|YP_003355279.1| - 4.9e-06 27.0 19.5 0.0021 18.5 5.1 2.5 2 1 1 3 3 3 3 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|282162894|ref|YP_003355279.1| - 1.6e-05 25.5 20.3 0.0084 17.0 6.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282162894|ref|YP_003355279.1| - 2.5e-05 24.7 13.7 0.0043 17.5 2.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282162894|ref|YP_003355279.1| - 3.3e-05 24.4 35.6 0.033 14.7 3.0 2.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282162894|ref|YP_003355279.1| - 0.0056 16.9 13.9 0.14 12.4 3.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain MTHFR_C PF12225.8 gi|282162894|ref|YP_003355279.1| - 0.55 9.9 12.4 0.23 11.1 3.3 2.2 1 1 1 2 2 2 0 Methylene-tetrahydrofolate reductase C terminal DapB_C PF05173.14 gi|282162895|ref|YP_003355280.1| - 1.6e-44 150.8 0.0 2.4e-44 150.2 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|282162895|ref|YP_003355280.1| - 6.1e-30 103.9 1.8 1.1e-29 103.1 1.8 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.16 gi|282162895|ref|YP_003355280.1| - 0.0026 18.4 0.9 0.0039 17.8 0.3 1.6 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Peripla_BP_6 PF13458.6 gi|282162895|ref|YP_003355280.1| - 0.014 15.1 0.2 0.022 14.4 0.2 1.4 1 0 0 1 1 1 0 Periplasmic binding protein Glyco_trans_4_2 PF13477.6 gi|282162895|ref|YP_003355280.1| - 0.017 15.1 0.0 0.098 12.7 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like DUF2277 PF10041.9 gi|282162895|ref|YP_003355280.1| - 0.052 13.9 0.4 0.11 12.9 0.4 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2277) CoA_binding_2 PF13380.6 gi|282162895|ref|YP_003355280.1| - 0.091 13.3 0.1 0.16 12.4 0.1 1.4 1 0 0 1 1 1 0 CoA binding domain DUF4357 PF14267.6 gi|282162895|ref|YP_003355280.1| - 0.27 11.2 1.3 0.39 10.7 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4357) DHDPS PF00701.22 gi|282162896|ref|YP_003355281.1| - 2e-94 315.6 0.3 2.3e-94 315.4 0.3 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Inhibitor_I69 PF13734.6 gi|282162896|ref|YP_003355281.1| - 0.072 13.5 0.0 0.17 12.3 0.0 1.7 1 0 0 1 1 1 0 Spi protease inhibitor Ribosomal_S17e PF00833.18 gi|282162897|ref|YP_003355282.1| - 1.7e-10 40.9 0.1 1.8e-10 40.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 Glycos_transf_2 PF00535.26 gi|282162898|ref|YP_003355283.1| - 1.6e-16 60.6 0.0 2.2e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282162898|ref|YP_003355283.1| - 0.0005 20.0 0.0 0.00068 19.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 gi|282162899|ref|YP_003355284.1| - 3.3e-28 98.4 0.0 1e-27 96.8 0.0 1.7 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282162899|ref|YP_003355284.1| - 1.6e-25 90.1 0.3 3.5e-25 89.0 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282162899|ref|YP_003355284.1| - 3.2e-20 72.8 0.0 4.9e-20 72.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|282162899|ref|YP_003355284.1| - 5.3e-18 66.0 0.0 6.1e-17 62.5 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|282162899|ref|YP_003355284.1| - 3.3e-06 27.4 0.0 8.3e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|282162900|ref|YP_003355285.1| - 1.3e-22 80.4 0.0 1.5e-22 80.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282162900|ref|YP_003355285.1| - 1.5e-10 41.4 0.0 1.8e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|282162900|ref|YP_003355285.1| - 0.013 15.0 0.1 0.11 11.9 0.0 2.4 2 2 1 3 3 3 0 Glycosyltransferase like family 2 BKACE PF05853.12 gi|282162901|ref|YP_003355286.1| - 1.4e-88 296.8 0.0 1.5e-88 296.6 0.0 1.0 1 0 0 1 1 1 1 beta-keto acid cleavage enzyme Radical_SAM PF04055.21 gi|282162901|ref|YP_003355286.1| - 0.00012 22.4 0.0 0.0003 21.2 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily AMP-binding PF00501.28 gi|282162902|ref|YP_003355287.1| - 2.7e-84 283.2 0.0 3.5e-84 282.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|282162902|ref|YP_003355287.1| - 2.4e-13 50.8 0.9 4.5e-13 50.0 0.9 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PP-binding PF00550.25 gi|282162902|ref|YP_003355287.1| - 1.7e-12 47.5 0.1 1.7e-11 44.3 0.1 2.4 2 0 0 2 2 2 1 Phosphopantetheine attachment site GH3 PF03321.13 gi|282162902|ref|YP_003355287.1| - 0.14 11.0 0.0 0.71 8.7 0.0 1.9 2 0 0 2 2 2 0 GH3 auxin-responsive promoter Condensation PF00668.20 gi|282162903|ref|YP_003355288.1| - 7.6e-107 357.8 0.0 1e-106 357.4 0.0 1.2 1 0 0 1 1 1 1 Condensation domain AMP-binding PF00501.28 gi|282162903|ref|YP_003355288.1| - 1.9e-90 303.5 0.0 2.5e-90 303.1 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Thioesterase PF00975.20 gi|282162903|ref|YP_003355288.1| - 2.6e-25 89.9 0.0 7.3e-22 78.6 0.1 2.2 2 0 0 2 2 2 2 Thioesterase domain PP-binding PF00550.25 gi|282162903|ref|YP_003355288.1| - 1.2e-14 54.4 0.0 3.9e-14 52.8 0.0 1.9 2 0 0 2 2 2 1 Phosphopantetheine attachment site AMP-binding_C PF13193.6 gi|282162903|ref|YP_003355288.1| - 8.3e-10 39.5 0.2 6.3e-09 36.7 0.0 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Abhydrolase_6 PF12697.7 gi|282162903|ref|YP_003355288.1| - 0.00011 22.9 2.3 0.00011 22.9 2.3 3.0 2 1 1 3 3 3 1 Alpha/beta hydrolase family Transferase PF02458.15 gi|282162903|ref|YP_003355288.1| - 0.016 13.9 0.0 0.026 13.2 0.0 1.2 1 0 0 1 1 1 0 Transferase family DUF4350 PF14258.6 gi|282162903|ref|YP_003355288.1| - 0.14 12.6 0.0 0.46 11.0 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) DLH PF01738.18 gi|282162903|ref|YP_003355288.1| - 0.15 11.6 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 Dienelactone hydrolase family ACPS PF01648.20 gi|282162904|ref|YP_003355289.1| - 2.4e-12 47.0 0.0 1e-11 44.9 0.0 1.8 2 0 0 2 2 2 1 4'-phosphopantetheinyl transferase superfamily Glyco_trans_1_4 PF13692.6 gi|282162905|ref|YP_003355290.1| - 3e-08 34.2 0.0 6e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|282162905|ref|YP_003355290.1| - 3.8e-05 23.3 0.0 0.00014 21.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|282162905|ref|YP_003355290.1| - 0.018 15.4 0.0 0.044 14.2 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282162906|ref|YP_003355291.1| - 3e-08 34.2 0.0 6.4e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|282162906|ref|YP_003355291.1| - 6.4e-06 25.8 0.1 6.8e-05 22.5 0.0 2.7 3 1 1 4 4 4 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|282162906|ref|YP_003355291.1| - 3.2e-05 24.2 0.1 0.00016 22.0 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282162906|ref|YP_003355291.1| - 0.067 13.2 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Methyltransf_23 PF13489.6 gi|282162907|ref|YP_003355292.1| - 2.6e-08 33.9 0.0 4.9e-08 33.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282162907|ref|YP_003355292.1| - 3.2e-05 24.6 0.0 5.1e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282162907|ref|YP_003355292.1| - 0.0008 20.0 0.0 0.0016 19.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282162907|ref|YP_003355292.1| - 0.0033 17.2 0.0 0.0069 16.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Mucin_bdg PF03272.13 gi|282162907|ref|YP_003355292.1| - 0.091 12.8 0.1 6.7 6.8 0.0 2.1 2 0 0 2 2 2 0 Putative mucin or carbohydrate-binding module Methyltransf_25 PF13649.6 gi|282162907|ref|YP_003355292.1| - 0.17 12.6 0.0 0.4 11.4 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_2 PF00535.26 gi|282162908|ref|YP_003355293.1| - 1.5e-31 109.5 0.2 2.1e-30 105.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282162908|ref|YP_003355293.1| - 8.2e-23 81.5 0.0 1e-22 81.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|282162908|ref|YP_003355293.1| - 5e-06 26.6 0.0 1.3e-05 25.2 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|282162908|ref|YP_003355293.1| - 0.00026 20.5 0.0 0.00045 19.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|282162908|ref|YP_003355293.1| - 0.039 14.5 0.0 0.084 13.4 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 gi|282162909|ref|YP_003355294.1| - 7.6e-35 120.2 0.1 1e-34 119.8 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|282162909|ref|YP_003355294.1| - 5.2e-07 29.4 0.0 7.6e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|282162909|ref|YP_003355294.1| - 6.7e-07 29.4 0.0 1.1e-06 28.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|282162909|ref|YP_003355294.1| - 4e-06 27.3 0.0 7.6e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Ost5 PF05251.12 gi|282162909|ref|YP_003355294.1| - 0.97 9.7 4.6 0.44 10.9 0.5 2.2 1 1 1 2 2 2 0 Oligosaccharyltransferase subunit 5 EamA PF00892.20 gi|282162910|ref|YP_003355295.1| - 1.2e-07 32.0 16.9 3.1e-07 30.7 17.0 1.6 1 1 0 1 1 1 1 EamA-like transporter family TMEM234 PF10639.9 gi|282162910|ref|YP_003355295.1| - 1.1e-05 25.4 4.7 1.2e-05 25.3 4.3 1.3 1 1 0 1 1 1 1 Putative transmembrane family 234 DMT_6 PF04342.12 gi|282162910|ref|YP_003355295.1| - 0.00047 20.3 7.4 0.049 13.9 0.6 2.1 1 1 1 2 2 2 2 Putative member of DMT superfamily (DUF486) Mg_trans_NIPA PF05653.14 gi|282162910|ref|YP_003355295.1| - 0.0035 16.5 6.4 0.0036 16.4 6.4 1.1 1 0 0 1 1 1 1 Magnesium transporter NIPA Multi_Drug_Res PF00893.19 gi|282162910|ref|YP_003355295.1| - 0.03 15.0 9.3 0.05 14.3 9.3 1.4 1 1 0 1 1 1 0 Small Multidrug Resistance protein CRT-like PF08627.10 gi|282162910|ref|YP_003355295.1| - 0.031 13.2 8.9 0.13 11.2 1.3 2.0 1 1 1 2 2 2 0 CRT-like, chloroquine-resistance transporter-like TPT PF03151.16 gi|282162910|ref|YP_003355295.1| - 0.049 13.0 0.8 0.049 13.0 0.8 2.1 1 1 1 2 2 2 0 Triose-phosphate Transporter family Bax1-I PF01027.20 gi|282162910|ref|YP_003355295.1| - 0.43 10.4 19.6 8.2 6.2 7.0 2.0 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 Methyltransf_23 PF13489.6 gi|282162911|ref|YP_003355296.1| - 5.6e-16 58.8 0.0 7.2e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282162911|ref|YP_003355296.1| - 8.6e-12 45.5 0.0 2.1e-11 44.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282162911|ref|YP_003355296.1| - 1.6e-07 31.2 0.2 4e-06 26.7 0.2 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282162911|ref|YP_003355296.1| - 1.6e-06 28.8 0.2 6e-05 23.7 0.2 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282162911|ref|YP_003355296.1| - 1.2e-05 25.9 0.2 0.00031 21.4 0.2 2.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282162911|ref|YP_003355296.1| - 0.0001 21.7 0.1 0.022 14.1 0.0 2.4 2 1 0 2 2 2 2 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|282162911|ref|YP_003355296.1| - 0.0024 17.5 0.0 0.0037 16.9 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|282162911|ref|YP_003355296.1| - 0.017 15.0 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_2 PF00891.18 gi|282162911|ref|YP_003355296.1| - 0.059 12.7 0.0 6.8 5.9 0.1 2.1 2 0 0 2 2 2 0 O-methyltransferase domain AdoMet_MTase PF07757.13 gi|282162911|ref|YP_003355296.1| - 0.07 13.5 0.1 0.11 12.8 0.1 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase DREV PF05219.12 gi|282162911|ref|YP_003355296.1| - 0.076 12.1 0.0 0.098 11.7 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase CytB6-F_Fe-S PF08802.10 gi|282162912|ref|YP_003355297.1| - 0.18 11.9 1.8 0.93 9.6 1.8 2.3 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit Acyl_transf_3 PF01757.22 gi|282162913|ref|YP_003355298.1| - 5.4e-26 91.4 42.6 6.9e-26 91.1 42.6 1.1 1 0 0 1 1 1 1 Acyltransferase family Glycos_transf_2 PF00535.26 gi|282162914|ref|YP_003355299.1| - 9.2e-40 136.2 0.1 3.8e-20 72.4 0.0 2.6 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282162914|ref|YP_003355299.1| - 9.5e-30 104.2 0.0 7.6e-17 62.0 0.0 3.5 2 2 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|282162914|ref|YP_003355299.1| - 3.6e-22 79.1 3.1 7.1e-13 48.7 0.1 3.9 4 0 0 4 4 4 3 Glycosyltransferase like family 2 Methyltransf_23 PF13489.6 gi|282162914|ref|YP_003355299.1| - 1.8e-16 60.4 0.0 4.4e-16 59.2 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282162914|ref|YP_003355299.1| - 3.4e-13 50.0 0.0 6.8e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282162914|ref|YP_003355299.1| - 1.2e-12 47.9 0.0 2.7e-12 46.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282162914|ref|YP_003355299.1| - 6.2e-10 39.7 0.0 1.5e-09 38.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282162914|ref|YP_003355299.1| - 2e-07 31.6 0.0 4.4e-07 30.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|282162914|ref|YP_003355299.1| - 8.6e-07 28.7 0.1 1.4e-06 28.0 0.1 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Glyco_trans_2_3 PF13632.6 gi|282162914|ref|YP_003355299.1| - 1.8e-05 24.7 0.8 8.2e-05 22.6 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferase family group 2 NodS PF05401.11 gi|282162914|ref|YP_003355299.1| - 0.0014 18.3 0.0 0.003 17.2 0.0 1.5 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.11 gi|282162914|ref|YP_003355299.1| - 0.0015 17.6 0.1 0.003 16.5 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Glyco_transf_7C PF02709.14 gi|282162914|ref|YP_003355299.1| - 0.0035 17.0 0.1 0.12 12.0 0.0 2.6 2 0 0 2 2 2 1 N-terminal domain of galactosyltransferase Glyco_transf_21 PF13506.6 gi|282162914|ref|YP_003355299.1| - 0.014 14.9 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 21 Methyltransf_3 PF01596.17 gi|282162914|ref|YP_003355299.1| - 0.034 13.3 0.0 0.089 11.9 0.0 1.6 1 0 0 1 1 1 0 O-methyltransferase APC_N_CC PF16689.5 gi|282162914|ref|YP_003355299.1| - 0.043 13.9 0.6 0.097 12.7 0.6 1.6 1 0 0 1 1 1 0 Coiled-coil N-terminus of APC, dimerisation domain NanE PF04131.14 gi|282162914|ref|YP_003355299.1| - 0.047 12.9 3.1 0.036 13.3 0.5 2.1 3 0 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase UPF0180 PF03698.13 gi|282162914|ref|YP_003355299.1| - 0.079 13.1 0.1 1.9 8.7 0.0 3.3 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0180) APG6_N PF17675.1 gi|282162914|ref|YP_003355299.1| - 0.11 13.0 0.8 0.22 12.0 0.8 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region ZapB PF06005.12 gi|282162914|ref|YP_003355299.1| - 0.11 12.9 2.9 0.23 11.9 2.9 1.4 1 0 0 1 1 1 0 Cell division protein ZapB ADIP PF11559.8 gi|282162914|ref|YP_003355299.1| - 0.34 11.0 2.4 0.68 10.0 2.4 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DivIC PF04977.15 gi|282162914|ref|YP_003355299.1| - 0.4 10.5 2.7 0.93 9.3 2.7 1.6 1 0 0 1 1 1 0 Septum formation initiator DUF4361 PF14274.6 gi|282162914|ref|YP_003355299.1| - 1.3 9.3 9.4 0.18 12.1 3.1 2.5 3 0 0 3 3 2 0 Domain of unknown function (DUF4361) bZIP_1 PF00170.21 gi|282162914|ref|YP_003355299.1| - 1.7 8.8 4.6 4.3 7.5 4.6 1.7 1 0 0 1 1 1 0 bZIP transcription factor ABC_tran PF00005.27 gi|282162915|ref|YP_003355300.1| - 5.5e-23 82.0 0.0 4.2e-22 79.1 0.0 2.2 1 1 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|282162915|ref|YP_003355300.1| - 1.9e-06 27.5 0.0 4e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|282162915|ref|YP_003355300.1| - 2.5e-06 27.6 2.6 0.00011 22.1 0.2 2.5 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|282162915|ref|YP_003355300.1| - 6.1e-06 26.9 0.1 8.4e-06 26.4 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|282162915|ref|YP_003355300.1| - 0.00024 20.9 0.0 0.00042 20.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|282162915|ref|YP_003355300.1| - 0.00025 20.6 0.9 0.012 15.1 0.2 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.15 gi|282162915|ref|YP_003355300.1| - 0.0009 19.2 0.4 0.027 14.4 0.4 2.2 1 1 0 1 1 1 1 NTPase AAA PF00004.29 gi|282162915|ref|YP_003355300.1| - 0.0034 17.8 0.5 0.033 14.6 0.3 2.3 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|282162915|ref|YP_003355300.1| - 0.0061 16.5 0.1 0.014 15.3 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_24 PF13479.6 gi|282162915|ref|YP_003355300.1| - 0.01 15.6 0.1 0.2 11.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|282162915|ref|YP_003355300.1| - 0.02 14.9 0.4 0.9 9.6 0.4 2.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|282162915|ref|YP_003355300.1| - 0.031 14.5 0.4 0.11 12.8 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|282162915|ref|YP_003355300.1| - 0.064 13.6 0.0 0.09 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Ploopntkinase1 PF18748.1 gi|282162915|ref|YP_003355300.1| - 0.094 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase1 AAA_18 PF13238.6 gi|282162915|ref|YP_003355300.1| - 0.13 12.8 0.3 0.46 11.0 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|282162915|ref|YP_003355300.1| - 0.17 12.0 0.1 0.34 11.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|282162916|ref|YP_003355301.1| - 1.7e-24 86.4 27.3 1.7e-24 86.4 27.3 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|282162916|ref|YP_003355301.1| - 5.8 5.9 42.4 0.04 13.0 23.3 2.1 1 1 1 2 2 2 0 ABC-2 family transporter protein Glycos_transf_2 PF00535.26 gi|282162917|ref|YP_003355302.1| - 2.9e-31 108.5 0.0 4.1e-31 108.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282162917|ref|YP_003355302.1| - 1.4e-19 70.9 0.0 2.2e-19 70.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|282162917|ref|YP_003355302.1| - 1.2e-08 34.8 0.0 1.8e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|282162917|ref|YP_003355302.1| - 1.4e-06 28.4 0.1 2.7e-06 27.5 0.1 1.6 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|282162917|ref|YP_003355302.1| - 0.016 14.7 0.0 0.065 12.7 0.0 1.9 1 1 0 1 1 1 0 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|282162917|ref|YP_003355302.1| - 0.12 12.9 0.0 0.2 12.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|282162918|ref|YP_003355303.1| - 4.4e-29 101.2 0.0 6.6e-29 100.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282162918|ref|YP_003355303.1| - 1.4e-16 61.2 0.0 2.8e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282162918|ref|YP_003355303.1| - 2.6e-13 50.3 0.3 5.2e-13 49.4 0.2 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|282162918|ref|YP_003355303.1| - 2.8e-05 24.4 0.0 8.5e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|282162918|ref|YP_003355303.1| - 0.00037 19.5 0.0 0.0006 18.8 0.0 1.3 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase PABP PF00658.18 gi|282162918|ref|YP_003355303.1| - 0.068 13.4 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Poly-adenylate binding protein, unique domain TPR_2 PF07719.17 gi|282162919|ref|YP_003355304.1| - 0.00015 21.6 0.4 0.13 12.4 0.1 2.9 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282162919|ref|YP_003355304.1| - 0.0068 16.5 0.1 0.049 13.8 0.1 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282162919|ref|YP_003355304.1| - 0.013 16.2 0.0 5.1 8.2 0.0 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282162919|ref|YP_003355304.1| - 0.029 14.9 0.0 1.2 9.7 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282162919|ref|YP_003355304.1| - 0.048 14.1 0.2 4.7 7.8 0.0 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat PQQ_2 PF13360.6 gi|282162920|ref|YP_003355305.1| - 5.9e-12 45.7 3.3 0.00021 21.0 0.2 3.7 2 2 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|282162920|ref|YP_003355305.1| - 5.2e-05 23.6 28.7 0.053 14.0 0.6 7.9 5 2 2 7 7 7 3 PQQ-like domain PQQ PF01011.21 gi|282162920|ref|YP_003355305.1| - 0.0035 17.2 3.7 7.6 6.7 0.1 5.5 5 0 0 5 5 5 1 PQQ enzyme repeat tRNA-synt_2b PF00587.25 gi|282162921|ref|YP_003355306.1| - 1.4e-21 77.2 0.0 2.4e-21 76.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|282162921|ref|YP_003355306.1| - 3e-17 62.6 0.3 5.5e-17 61.7 0.3 1.5 1 0 0 1 1 1 1 Anticodon binding domain Glyco_hydro_114 PF03537.13 gi|282162921|ref|YP_003355306.1| - 0.067 12.5 0.2 0.14 11.5 0.2 1.5 1 1 0 1 1 1 0 Glycoside-hydrolase family GH114 AAA PF00004.29 gi|282162923|ref|YP_003355308.1| - 8.2e-46 155.7 0.1 2.5e-45 154.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|282162923|ref|YP_003355308.1| - 1.6e-09 37.4 0.0 3.8e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_16 PF13191.6 gi|282162923|ref|YP_003355308.1| - 8e-07 29.6 0.3 1.3e-05 25.6 0.3 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|282162923|ref|YP_003355308.1| - 1.6e-05 24.9 0.1 0.00011 22.2 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|282162923|ref|YP_003355308.1| - 3.3e-05 23.7 0.2 0.00014 21.7 0.0 2.1 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|282162923|ref|YP_003355308.1| - 4.7e-05 23.6 0.1 0.00018 21.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|282162923|ref|YP_003355308.1| - 0.0006 20.1 1.7 0.014 15.7 0.1 2.6 2 1 1 3 3 2 1 AAA domain RNA_helicase PF00910.22 gi|282162923|ref|YP_003355308.1| - 0.00072 19.9 0.0 0.0016 18.8 0.0 1.6 1 0 0 1 1 1 1 RNA helicase TIP49 PF06068.13 gi|282162923|ref|YP_003355308.1| - 0.001 18.4 0.9 0.0021 17.4 0.0 1.8 2 0 0 2 2 2 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|282162923|ref|YP_003355308.1| - 0.0018 18.0 0.0 0.0033 17.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF815 PF05673.13 gi|282162923|ref|YP_003355308.1| - 0.002 17.3 0.0 0.0045 16.2 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|282162923|ref|YP_003355308.1| - 0.0069 15.8 0.1 0.015 14.7 0.1 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|282162923|ref|YP_003355308.1| - 0.0072 15.7 0.0 0.039 13.3 0.0 2.3 1 1 0 1 1 1 1 KaiC Parvo_NS1 PF01057.17 gi|282162923|ref|YP_003355308.1| - 0.0072 15.4 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_33 PF13671.6 gi|282162923|ref|YP_003355308.1| - 0.0091 16.2 0.0 0.019 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|282162923|ref|YP_003355308.1| - 0.012 16.2 0.1 0.089 13.3 0.0 2.3 3 0 0 3 3 2 0 AAA domain Sigma54_activat PF00158.26 gi|282162923|ref|YP_003355308.1| - 0.015 15.0 0.0 0.061 13.0 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|282162923|ref|YP_003355308.1| - 0.016 14.9 0.0 0.039 13.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|282162923|ref|YP_003355308.1| - 0.02 14.4 0.0 0.038 13.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 gi|282162923|ref|YP_003355308.1| - 0.02 14.9 0.0 0.056 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain GrpE PF01025.19 gi|282162923|ref|YP_003355308.1| - 0.023 14.4 1.5 1.3 8.7 0.6 2.3 2 0 0 2 2 2 0 GrpE YscO PF07321.12 gi|282162923|ref|YP_003355308.1| - 0.026 14.5 2.2 0.048 13.6 2.2 1.3 1 0 0 1 1 1 0 Type III secretion protein YscO PhoH PF02562.16 gi|282162923|ref|YP_003355308.1| - 0.031 13.7 0.2 0.18 11.2 0.1 2.2 2 0 0 2 2 2 0 PhoH-like protein Prot_ATP_OB_N PF17758.1 gi|282162923|ref|YP_003355308.1| - 0.058 13.0 0.3 0.17 11.6 0.1 1.9 2 0 0 2 2 1 0 Proteasomal ATPase OB N-terminal domain AAA_25 PF13481.6 gi|282162923|ref|YP_003355308.1| - 0.067 12.8 0.6 0.31 10.6 0.2 2.2 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|282162923|ref|YP_003355308.1| - 0.076 13.3 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|282162923|ref|YP_003355308.1| - 0.076 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|282162923|ref|YP_003355308.1| - 0.082 12.8 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|282162923|ref|YP_003355308.1| - 0.085 12.6 0.2 0.29 10.8 0.2 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|282162923|ref|YP_003355308.1| - 0.12 12.3 0.0 0.25 11.3 0.0 1.6 1 1 0 1 1 1 0 NACHT domain GIT_CC PF16559.5 gi|282162923|ref|YP_003355308.1| - 0.39 10.6 4.6 0.93 9.4 4.6 1.6 1 0 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor DMPK_coil PF08826.10 gi|282162923|ref|YP_003355308.1| - 0.53 10.4 7.9 1.2 9.3 7.9 1.6 1 0 0 1 1 1 0 DMPK coiled coil domain like Spc29 PF17082.5 gi|282162923|ref|YP_003355308.1| - 0.94 9.3 3.0 1.6 8.5 3.0 1.3 1 0 0 1 1 1 0 Spindle Pole Component 29 PPDK_N PF01326.19 gi|282162924|ref|YP_003355309.1| - 1.3e-92 310.6 0.0 1.7e-92 310.2 0.0 1.1 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|282162924|ref|YP_003355309.1| - 8.5e-24 83.1 0.0 2.9e-23 81.4 0.0 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain ABC2_membrane_3 PF12698.7 gi|282162925|ref|YP_003355310.1| - 1.1e-43 149.7 28.0 3e-33 115.4 22.3 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|282162925|ref|YP_003355310.1| - 9.9e-31 106.8 19.1 9.9e-31 106.8 19.1 2.7 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|282162925|ref|YP_003355310.1| - 1.5e-14 54.0 22.2 4.6e-14 52.4 22.2 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|282162925|ref|YP_003355310.1| - 6.4 6.7 23.7 0.082 12.9 13.9 2.8 3 1 0 3 3 3 0 ABC-2 family transporter protein DUF2371 PF10177.9 gi|282162925|ref|YP_003355310.1| - 7.6 6.7 6.4 1.8 8.7 0.0 2.8 3 1 1 4 4 4 0 Uncharacterised conserved protein (DUF2371) ABC_tran PF00005.27 gi|282162926|ref|YP_003355311.1| - 8.6e-31 107.3 0.0 1.1e-30 106.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282162926|ref|YP_003355311.1| - 2.3e-12 47.4 0.0 1.4e-05 25.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|282162926|ref|YP_003355311.1| - 0.0013 19.2 0.0 0.002 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|282162926|ref|YP_003355311.1| - 0.0075 16.0 0.1 0.018 14.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|282162926|ref|YP_003355311.1| - 0.012 15.3 0.0 1.7 8.3 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|282162926|ref|YP_003355311.1| - 0.017 15.6 0.1 0.053 13.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|282162926|ref|YP_003355311.1| - 0.058 12.8 0.0 7.1 6.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.21 gi|282162926|ref|YP_003355311.1| - 0.17 11.2 0.1 0.46 9.8 0.1 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|282162926|ref|YP_003355311.1| - 0.18 11.8 0.2 0.35 10.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DLIC PF05783.11 gi|282162926|ref|YP_003355311.1| - 0.2 10.4 0.0 0.29 9.9 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) TrmB PF01978.19 gi|282162927|ref|YP_003355312.1| - 6.8e-22 77.1 0.6 1.3e-21 76.3 0.6 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|282162927|ref|YP_003355312.1| - 6.8e-05 23.2 0.1 0.00016 22.0 0.1 1.8 1 1 0 1 1 1 1 Penicillinase repressor Fe_dep_repress PF01325.19 gi|282162927|ref|YP_003355312.1| - 0.011 15.9 0.3 0.033 14.4 0.2 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|282162927|ref|YP_003355312.1| - 0.011 16.2 0.0 0.037 14.5 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|282162927|ref|YP_003355312.1| - 0.015 15.1 0.0 0.093 12.5 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|282162927|ref|YP_003355312.1| - 0.027 14.3 0.0 0.063 13.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Regulator_TrmB PF11495.8 gi|282162927|ref|YP_003355312.1| - 0.036 13.3 0.0 0.076 12.2 0.0 1.6 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB DUF1495 PF07381.11 gi|282162927|ref|YP_003355312.1| - 0.14 12.0 0.0 0.71 9.7 0.0 2.2 3 0 0 3 3 3 0 Winged helix DNA-binding domain (DUF1495) PcrB PF01884.17 gi|282162928|ref|YP_003355313.1| - 4.7e-69 232.3 0.1 5.2e-69 232.1 0.1 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.20 gi|282162928|ref|YP_003355313.1| - 0.01 14.7 0.2 0.063 12.1 0.0 2.1 2 1 1 3 3 3 0 Tryptophan synthase alpha chain BtpA PF03437.15 gi|282162928|ref|YP_003355313.1| - 0.06 12.8 0.4 0.46 9.9 0.1 2.0 2 0 0 2 2 2 0 BtpA family MMR_HSR1_Xtn PF16897.5 gi|282162929|ref|YP_003355314.1| - 5.2e-35 119.7 0.4 1.2e-34 118.5 0.4 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|282162929|ref|YP_003355314.1| - 6.5e-22 77.8 0.0 1.5e-21 76.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|282162929|ref|YP_003355314.1| - 2.7e-18 65.8 0.1 5.8e-18 64.7 0.1 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|282162929|ref|YP_003355314.1| - 5.8e-15 55.1 0.4 6.7e-14 51.7 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|282162929|ref|YP_003355314.1| - 0.00021 21.2 0.2 0.024 14.5 0.1 2.5 2 0 0 2 2 2 1 RsgA GTPase MeaB PF03308.16 gi|282162929|ref|YP_003355314.1| - 0.00051 19.1 0.0 0.033 13.2 0.0 2.5 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB GTP_EFTU PF00009.27 gi|282162929|ref|YP_003355314.1| - 0.0014 18.2 0.4 1.1 8.8 0.0 3.5 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|282162929|ref|YP_003355314.1| - 0.0026 17.8 0.5 1.1 9.2 0.1 3.0 2 1 1 3 3 3 1 Dynamin family ATP_bind_1 PF03029.17 gi|282162929|ref|YP_003355314.1| - 0.0064 16.3 0.3 2.7 7.7 0.0 2.7 3 0 0 3 3 3 2 Conserved hypothetical ATP binding protein MnmE_helical PF12631.7 gi|282162929|ref|YP_003355314.1| - 0.022 14.9 1.2 0.086 13.0 0.0 2.0 2 0 0 2 2 2 0 MnmE helical domain cobW PF02492.19 gi|282162929|ref|YP_003355314.1| - 0.026 14.1 2.3 3.1 7.4 0.1 3.1 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|282162929|ref|YP_003355314.1| - 0.035 14.4 0.0 0.08 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|282162929|ref|YP_003355314.1| - 0.055 13.7 0.1 0.52 10.5 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase MCM PF00493.23 gi|282162929|ref|YP_003355314.1| - 0.062 12.4 0.1 0.11 11.5 0.1 1.4 1 0 0 1 1 1 0 MCM P-loop domain AAA_16 PF13191.6 gi|282162929|ref|YP_003355314.1| - 0.11 12.9 0.0 0.28 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain KTI12 PF08433.10 gi|282162929|ref|YP_003355314.1| - 0.15 11.4 0.0 0.29 10.5 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 KELK PF15796.5 gi|282162929|ref|YP_003355314.1| - 0.29 11.6 3.6 0.57 10.7 3.6 1.5 1 0 0 1 1 1 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase SRPRB PF09439.10 gi|282162929|ref|YP_003355314.1| - 0.33 10.4 0.0 0.33 10.4 0.0 1.9 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ABC_tran_CTD PF16326.5 gi|282162929|ref|YP_003355314.1| - 0.62 10.3 3.3 1.3 9.3 3.3 1.6 1 0 0 1 1 1 0 ABC transporter C-terminal domain DUF465 PF04325.13 gi|282162929|ref|YP_003355314.1| - 1.8 8.7 8.4 2.8 8.1 5.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF465) DUF3798 PF12683.7 gi|282162931|ref|YP_003355316.1| - 0.035 13.5 0.0 0.043 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) Big_1 PF02369.16 gi|282162932|ref|YP_003355317.1| - 3e-06 27.1 0.0 0.00016 21.6 0.0 2.6 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|282162932|ref|YP_003355317.1| - 0.0093 16.3 0.9 0.05 13.9 0.0 2.5 2 1 0 2 2 2 1 Invasin, domain 3 Androgen_recep PF02166.16 gi|282162932|ref|YP_003355317.1| - 0.13 11.0 0.0 0.24 10.2 0.0 1.3 1 0 0 1 1 1 0 Androgen receptor Hexokinase_1 PF00349.21 gi|282162934|ref|YP_003355319.1| - 0.17 11.8 0.0 0.42 10.5 0.0 1.6 2 0 0 2 2 2 0 Hexokinase Phyto-Amp PF15438.6 gi|282162935|ref|YP_003355320.1| - 0.031 14.1 0.1 0.051 13.4 0.1 1.2 1 0 0 1 1 1 0 Antigenic membrane protein of phytoplasma DUF1743 PF08489.11 gi|282162936|ref|YP_003355321.1| - 7.6e-07 29.2 0.7 0.00043 20.3 0.0 3.3 2 1 1 3 3 3 3 Domain of unknown function (DUF1743) PTA_PTB PF01515.19 gi|282162937|ref|YP_003355322.1| - 4.7e-10 39.3 0.0 2.2e-07 30.5 0.0 2.8 2 1 1 3 3 3 2 Phosphate acetyl/butaryl transferase DUF192 PF02643.15 gi|282162938|ref|YP_003355323.1| - 3.8e-23 81.5 0.0 4.4e-23 81.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Na_Ca_ex PF01699.24 gi|282162939|ref|YP_003355324.1| - 4.6e-22 78.6 32.2 6.4e-13 48.9 9.7 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein VPDSG-CTERM PF18205.1 gi|282162939|ref|YP_003355324.1| - 0.0048 16.7 1.3 0.0048 16.7 1.3 4.1 3 0 0 3 3 3 1 VPDSG-CTERM motif SpoIISA_toxin PF14171.6 gi|282162939|ref|YP_003355324.1| - 0.27 10.9 1.6 0.25 11.0 0.2 1.6 2 0 0 2 2 2 0 Toxin SpoIISA, type II toxin-antitoxin system TMEM72 PF16054.5 gi|282162939|ref|YP_003355324.1| - 5.3 6.7 7.7 0.63 9.7 2.5 2.3 2 1 0 2 2 2 0 Transmembrane protein family 72 NAD_synthase PF02540.17 gi|282162940|ref|YP_003355325.1| - 6.6e-76 254.6 0.0 7.7e-76 254.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|282162940|ref|YP_003355325.1| - 8.8e-05 21.5 0.0 0.059 12.2 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|282162940|ref|YP_003355325.1| - 0.00022 21.0 0.0 0.00075 19.3 0.1 1.7 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.13 gi|282162940|ref|YP_003355325.1| - 0.057 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC HTH_23 PF13384.6 gi|282162940|ref|YP_003355325.1| - 0.18 11.7 0.0 0.47 10.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain EamA PF00892.20 gi|282162941|ref|YP_003355326.1| - 4e-25 88.6 39.9 3.5e-17 62.8 10.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family PUNUT PF16913.5 gi|282162941|ref|YP_003355326.1| - 1.5 8.0 10.6 0.56 9.4 2.1 2.9 2 1 1 3 3 3 0 Purine nucleobase transmembrane transport DUF3592 PF12158.8 gi|282162941|ref|YP_003355326.1| - 1.9 8.6 0.0 1.9 8.6 0.0 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF3592) NTP_transferase PF00483.23 gi|282162942|ref|YP_003355327.1| - 1.4e-34 119.8 0.0 1.6e-34 119.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|282162942|ref|YP_003355327.1| - 7.1e-10 39.5 0.0 9.1e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|282162942|ref|YP_003355327.1| - 0.019 14.7 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|282162943|ref|YP_003355328.1| - 3.8e-27 95.5 0.0 5.4e-27 94.9 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|282162943|ref|YP_003355328.1| - 8e-09 35.1 1.3 8e-09 35.1 1.3 2.0 2 0 0 2 2 2 1 Cupin domain MannoseP_isomer PF01050.18 gi|282162943|ref|YP_003355328.1| - 2.3e-08 34.0 0.5 7.4e-08 32.4 0.4 1.8 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase NTP_transf_3 PF12804.7 gi|282162943|ref|YP_003355328.1| - 2e-06 28.3 0.0 2.9e-06 27.7 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain AraC_binding PF02311.19 gi|282162943|ref|YP_003355328.1| - 0.00048 20.0 0.2 0.00089 19.2 0.2 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Ectoine_synth PF06339.12 gi|282162943|ref|YP_003355328.1| - 0.0035 17.5 0.4 0.006 16.8 0.4 1.3 1 0 0 1 1 1 1 Ectoine synthase Cupin_3 PF05899.12 gi|282162943|ref|YP_003355328.1| - 0.0071 16.0 0.3 0.081 12.6 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF861) Cupin_7 PF12973.7 gi|282162943|ref|YP_003355328.1| - 0.053 13.4 0.2 0.11 12.4 0.2 1.5 1 0 0 1 1 1 0 ChrR Cupin-like domain Glycos_transf_2 PF00535.26 gi|282162943|ref|YP_003355328.1| - 0.062 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF362 PF04015.12 gi|282162944|ref|YP_003355329.1| - 6.9e-34 117.9 0.1 8.4e-34 117.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|282162944|ref|YP_003355329.1| - 1.7e-08 33.9 12.9 2.1e-05 24.1 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282162944|ref|YP_003355329.1| - 9.7e-07 28.8 8.7 2.7e-06 27.4 8.7 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282162944|ref|YP_003355329.1| - 1.1e-06 28.7 12.2 2.5e-06 27.6 12.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282162944|ref|YP_003355329.1| - 1.6e-05 24.7 11.3 0.00071 19.5 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282162944|ref|YP_003355329.1| - 1.6e-05 24.9 13.9 0.0001 22.3 14.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282162944|ref|YP_003355329.1| - 2.6e-05 24.7 13.3 0.00053 20.5 14.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282162944|ref|YP_003355329.1| - 4.7e-05 24.2 9.2 0.0019 19.1 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|282162944|ref|YP_003355329.1| - 0.00011 22.7 10.1 0.05 14.1 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282162944|ref|YP_003355329.1| - 0.00016 22.1 7.1 0.099 13.1 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282162944|ref|YP_003355329.1| - 0.00034 20.9 12.4 0.052 14.1 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282162944|ref|YP_003355329.1| - 0.00086 19.3 12.8 0.0024 17.9 0.7 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Lar_N PF09861.9 gi|282162944|ref|YP_003355329.1| - 0.0043 16.2 0.5 0.0073 15.5 0.5 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain Fer4_18 PF13746.6 gi|282162944|ref|YP_003355329.1| - 0.0086 16.3 5.9 0.022 15.0 5.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282162944|ref|YP_003355329.1| - 0.071 13.7 10.0 0.31 11.6 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|282162944|ref|YP_003355329.1| - 0.32 11.8 9.2 1.1 10.2 3.1 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282162944|ref|YP_003355329.1| - 6.9 7.5 10.8 1.6 9.5 2.7 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain GPI PF06560.11 gi|282162945|ref|YP_003355330.1| - 4.3e-46 156.5 0.0 5.3e-46 156.2 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|282162945|ref|YP_003355330.1| - 0.002 17.8 0.0 0.0039 16.9 0.0 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|282162945|ref|YP_003355330.1| - 0.091 12.4 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Cupin Rubrerythrin PF02915.17 gi|282162946|ref|YP_003355331.1| - 9.7e-14 51.9 2.4 2.1e-12 47.6 2.2 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|282162946|ref|YP_003355331.1| - 6.4e-07 29.4 0.5 5.7e-05 23.1 0.5 2.0 1 1 0 1 1 1 1 Ferritin-like domain FA_desaturase_2 PF03405.14 gi|282162946|ref|YP_003355331.1| - 0.076 11.9 0.2 0.15 10.9 0.1 1.5 1 1 1 2 2 2 0 Fatty acid desaturase Peptidase_U4 PF03419.13 gi|282162947|ref|YP_003355332.1| - 0.5 9.6 3.8 0.65 9.2 3.8 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA Trm112p PF03966.16 gi|282162948|ref|YP_003355333.1| - 1e-10 42.0 3.4 2.4e-10 40.8 3.4 1.6 1 1 0 1 1 1 1 Trm112p-like protein Elf1 PF05129.13 gi|282162948|ref|YP_003355333.1| - 0.00063 19.7 0.1 0.00063 19.7 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.7 gi|282162948|ref|YP_003355333.1| - 0.023 14.7 0.3 0.029 14.3 0.3 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|282162948|ref|YP_003355333.1| - 0.024 15.0 1.8 0.029 14.8 1.8 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar Tmemb_55A PF09788.9 gi|282162948|ref|YP_003355333.1| - 0.055 12.5 0.4 0.061 12.4 0.4 1.0 1 0 0 1 1 1 0 Transmembrane protein 55A Adenylsucc_synt PF00709.21 gi|282162949|ref|YP_003355334.1| - 3.2e-79 266.8 4.0 4.7e-40 137.8 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase FAD-oxidase_C PF02913.19 gi|282162951|ref|YP_003355336.1| - 1.3e-60 205.2 0.0 1.6e-60 204.8 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|282162951|ref|YP_003355336.1| - 8.2e-45 152.0 0.2 1.7e-44 150.9 0.2 1.6 1 0 0 1 1 1 1 FAD binding domain Lact-deh-memb PF09330.11 gi|282162951|ref|YP_003355336.1| - 0.00063 19.2 0.0 0.00085 18.7 0.0 1.2 1 0 0 1 1 1 1 D-lactate dehydrogenase, membrane binding BBE PF08031.12 gi|282162951|ref|YP_003355336.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Berberine and berberine like CCG PF02754.16 gi|282162952|ref|YP_003355337.1| - 3.6e-25 88.0 3.0 2.7e-13 50.0 0.7 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|282162952|ref|YP_003355337.1| - 2.5e-09 37.4 6.0 2.5e-09 37.4 6.0 2.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282162952|ref|YP_003355337.1| - 1.9e-07 31.5 8.2 1.9e-07 31.5 8.2 3.0 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282162952|ref|YP_003355337.1| - 2.3e-07 31.3 6.4 2.3e-07 31.3 6.4 2.5 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282162952|ref|YP_003355337.1| - 2.4e-05 24.4 16.8 0.00045 20.3 12.1 4.0 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282162952|ref|YP_003355337.1| - 4.3e-05 23.6 12.8 0.00012 22.1 8.1 3.6 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282162952|ref|YP_003355337.1| - 0.00071 20.5 8.6 0.00071 20.5 8.6 3.2 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|282162952|ref|YP_003355337.1| - 0.03 14.8 21.8 0.04 14.4 1.4 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4 PF00037.27 gi|282162952|ref|YP_003355337.1| - 0.036 13.9 3.1 0.036 13.9 3.1 3.8 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282162952|ref|YP_003355337.1| - 0.064 13.4 14.4 0.52 10.5 0.8 3.9 5 0 0 5 5 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282162952|ref|YP_003355337.1| - 0.072 13.3 3.3 3.5 7.9 0.0 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Lar_N PF09861.9 gi|282162953|ref|YP_003355338.1| - 1.9e-70 236.2 0.0 3.8e-70 235.2 0.0 1.5 1 0 0 1 1 1 1 Lactate racemase N-terminal domain DUF362 PF04015.12 gi|282162953|ref|YP_003355338.1| - 0.00012 22.4 0.1 0.00024 21.4 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Herpes_pp38 PF04846.13 gi|282162954|ref|YP_003355339.1| - 0.31 11.0 2.1 0.48 10.4 1.5 1.7 1 1 1 2 2 2 0 Herpesvirus pp38 phosphoprotein Oxidored_molyb PF00174.19 gi|282162955|ref|YP_003355340.1| - 3.5e-35 121.1 0.0 4.8e-35 120.7 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain GDE_N_bis PF14742.6 gi|282162956|ref|YP_003355341.1| - 1.7e-52 177.9 0.0 3.9e-52 176.6 0.0 1.7 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.14 gi|282162956|ref|YP_003355341.1| - 6.3e-14 51.7 0.0 1.8e-13 50.2 0.0 1.7 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Glyco_hydro_63 PF03200.16 gi|282162956|ref|YP_003355341.1| - 0.011 14.6 0.2 0.11 11.3 0.1 2.1 1 1 1 2 2 2 0 Glycosyl hydrolase family 63 C-terminal domain DUF4010 PF13194.6 gi|282162957|ref|YP_003355342.1| - 3.9e-61 206.4 23.5 3.9e-61 206.4 23.5 2.8 3 1 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|282162957|ref|YP_003355342.1| - 1e-17 64.6 13.6 1e-17 64.6 13.6 3.8 2 1 0 2 2 2 1 MgtC family Pribosyltran PF00156.27 gi|282162958|ref|YP_003355343.1| - 6.2e-28 97.3 0.0 9.4e-28 96.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|282162958|ref|YP_003355343.1| - 0.0001 21.9 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.6 gi|282162958|ref|YP_003355343.1| - 0.00012 21.6 0.0 0.00016 21.2 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PNP_UDP_1 PF01048.20 gi|282162958|ref|YP_003355343.1| - 0.018 14.3 0.9 4.1 6.6 0.1 2.2 1 1 0 2 2 2 0 Phosphorylase superfamily Pribosyl_synth PF14572.6 gi|282162958|ref|YP_003355343.1| - 0.084 12.9 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain DUF373 PF04123.13 gi|282162961|ref|YP_003355346.1| - 2e-121 405.6 4.6 2.3e-121 405.3 4.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF996 PF06195.13 gi|282162961|ref|YP_003355346.1| - 0.0029 17.9 2.8 0.0029 17.9 2.8 2.7 2 1 1 3 3 3 1 Protein of unknown function (DUF996) DUF554 PF04474.12 gi|282162961|ref|YP_003355346.1| - 0.012 15.0 5.5 0.022 14.2 5.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF554) DUF1640 PF07798.11 gi|282162961|ref|YP_003355346.1| - 0.087 12.9 0.3 0.17 11.9 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) Abhydrolase_9_N PF15420.6 gi|282162961|ref|YP_003355346.1| - 0.39 10.7 7.3 0.17 11.9 1.2 2.3 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus DUF2935 PF11155.8 gi|282162962|ref|YP_003355347.1| - 0.0081 16.5 23.7 0.45 10.8 4.8 3.6 2 1 1 3 3 3 3 Domain of unknown function (DUF2935) DUF1771 PF08590.10 gi|282162962|ref|YP_003355347.1| - 0.018 15.4 27.2 0.48 10.8 4.5 4.7 2 2 2 4 4 4 0 Domain of unknown function (DUF1771) Laminin_II PF06009.12 gi|282162962|ref|YP_003355347.1| - 0.18 11.8 26.1 1.1 9.2 10.7 4.1 1 1 3 4 4 4 0 Laminin Domain II MscS_porin PF12795.7 gi|282162962|ref|YP_003355347.1| - 0.4 10.2 33.1 0.19 11.2 4.5 3.8 1 1 3 4 4 4 0 Mechanosensitive ion channel porin domain DUF357 PF04010.13 gi|282162962|ref|YP_003355347.1| - 0.61 10.2 5.5 19 5.4 0.1 3.7 2 1 2 4 4 4 0 Protein of unknown function (DUF357) DUF948 PF06103.11 gi|282162962|ref|YP_003355347.1| - 0.68 10.2 15.4 0.66 10.3 0.8 3.9 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF948) SRF-TF PF00319.18 gi|282162962|ref|YP_003355347.1| - 1.9 8.1 5.4 0.79 9.3 0.1 3.1 3 0 0 3 3 3 0 SRF-type transcription factor (DNA-binding and dimerisation domain) T3SSipB PF16535.5 gi|282162962|ref|YP_003355347.1| - 3.1 8.2 30.0 0.71 10.3 4.3 3.2 1 1 1 2 2 2 0 Type III cell invasion protein SipB Seryl_tRNA_N PF02403.22 gi|282162962|ref|YP_003355347.1| - 3.7 7.8 51.4 2.9 8.2 8.1 4.6 1 1 4 5 5 5 0 Seryl-tRNA synthetase N-terminal domain PilJ PF13675.6 gi|282162962|ref|YP_003355347.1| - 4.5 7.3 9.7 47 4.0 0.1 3.7 1 1 3 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF1664 PF07889.12 gi|282162962|ref|YP_003355347.1| - 5.4 7.1 21.1 1 9.4 2.7 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Laminin_I PF06008.14 gi|282162962|ref|YP_003355347.1| - 7.4 6.2 31.9 8.5 6.0 29.6 2.3 1 1 1 2 2 2 0 Laminin Domain I ERM PF00769.19 gi|282162962|ref|YP_003355347.1| - 8.5 6.1 46.9 7 6.4 17.7 3.1 1 1 2 3 3 3 0 Ezrin/radixin/moesin family HAD PF12710.7 gi|282162963|ref|YP_003355348.1| - 2.2e-22 80.4 0.0 3e-22 79.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|282162963|ref|YP_003355348.1| - 1.2e-19 71.4 0.0 2.2e-19 70.6 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|282162963|ref|YP_003355348.1| - 2.3e-09 37.4 0.0 3.2e-07 30.4 0.0 2.9 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|282162963|ref|YP_003355348.1| - 3.6e-07 30.5 0.0 5e-05 23.5 0.0 2.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|282162963|ref|YP_003355348.1| - 0.00018 21.0 0.1 0.014 14.8 0.1 2.3 1 1 0 1 1 1 1 Putative Phosphatase DUF373 PF04123.13 gi|282162963|ref|YP_003355348.1| - 0.17 11.3 0.1 10 5.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF373) SHMT PF00464.19 gi|282162964|ref|YP_003355349.1| - 1.4e-80 270.8 0.2 1.7e-80 270.6 0.2 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|282162964|ref|YP_003355349.1| - 5.7e-09 35.6 0.0 2.4e-08 33.6 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|282162964|ref|YP_003355349.1| - 1.2e-07 31.3 0.1 2.5e-07 30.3 0.1 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|282162964|ref|YP_003355349.1| - 1.1e-06 27.9 0.1 3.4e-06 26.3 0.1 1.7 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.19 gi|282162964|ref|YP_003355349.1| - 0.00089 18.3 0.1 0.0012 17.9 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|282162964|ref|YP_003355349.1| - 0.085 11.4 0.0 0.19 10.2 0.0 1.4 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme CBS PF00571.28 gi|282162965|ref|YP_003355350.1| - 1e-41 141.2 12.7 3.8e-15 56.1 0.4 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|282162966|ref|YP_003355351.1| - 9.9e-39 131.6 11.7 8.3e-10 39.0 0.1 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|282162967|ref|YP_003355352.1| - 6.5e-53 177.0 15.2 5.8e-15 55.5 0.1 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|282162968|ref|YP_003355353.1| - 1.5e-48 163.0 10.5 4.7e-13 49.4 0.1 4.1 4 0 0 4 4 4 4 CBS domain sCache_3_2 PF17203.4 gi|282162968|ref|YP_003355353.1| - 0.22 11.6 2.4 58 3.8 0.0 3.8 4 0 0 4 4 4 0 Single cache domain 3 CBS PF00571.28 gi|282162969|ref|YP_003355354.1| - 6.2e-25 87.4 5.1 1.7e-14 54.0 0.2 2.3 2 0 0 2 2 2 2 CBS domain zf-RRN7 PF11781.8 gi|282162969|ref|YP_003355354.1| - 0.003 17.2 1.6 0.0049 16.5 1.6 1.2 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 MMR_HSR1 PF01926.23 gi|282162970|ref|YP_003355355.1| - 6.4e-17 61.7 0.0 8.8e-17 61.2 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|282162970|ref|YP_003355355.1| - 4.1e-13 49.3 0.4 5.7e-06 26.0 0.0 2.9 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|282162970|ref|YP_003355355.1| - 4.2e-05 23.5 0.1 0.26 11.2 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase Arf PF00025.21 gi|282162970|ref|YP_003355355.1| - 7.6e-05 22.2 0.0 0.083 12.3 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family FeoB_N PF02421.18 gi|282162970|ref|YP_003355355.1| - 0.00014 21.5 0.4 0.00053 19.5 0.4 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B Roc PF08477.13 gi|282162970|ref|YP_003355355.1| - 0.00018 21.7 0.0 0.041 14.1 0.0 2.1 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase Septin PF00735.18 gi|282162970|ref|YP_003355355.1| - 0.00044 19.6 0.0 0.00061 19.2 0.0 1.2 1 0 0 1 1 1 1 Septin MMR_HSR1_Xtn PF16897.5 gi|282162970|ref|YP_003355355.1| - 0.0028 17.6 0.0 0.0038 17.2 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA_24 PF13479.6 gi|282162970|ref|YP_003355355.1| - 0.0054 16.5 0.1 0.0079 15.9 0.1 1.4 1 1 0 1 1 1 1 AAA domain SRPRB PF09439.10 gi|282162970|ref|YP_003355355.1| - 0.0057 16.1 0.0 0.13 11.6 0.0 2.2 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|282162970|ref|YP_003355355.1| - 0.011 15.8 0.0 2 8.4 0.0 2.3 1 1 0 2 2 2 0 Dynamin family AAA PF00004.29 gi|282162970|ref|YP_003355355.1| - 0.011 16.2 0.1 0.02 15.3 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|282162970|ref|YP_003355355.1| - 0.015 14.9 0.0 0.52 9.9 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|282162970|ref|YP_003355355.1| - 0.03 14.7 0.0 0.055 13.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.6 gi|282162970|ref|YP_003355355.1| - 0.034 14.4 0.0 0.13 12.6 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|282162970|ref|YP_003355355.1| - 0.036 14.5 0.0 0.043 14.2 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|282162970|ref|YP_003355355.1| - 0.037 14.6 0.1 0.095 13.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|282162970|ref|YP_003355355.1| - 0.043 13.7 0.0 0.058 13.3 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea MeaB PF03308.16 gi|282162970|ref|YP_003355355.1| - 0.047 12.7 0.4 0.12 11.3 0.1 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 gi|282162970|ref|YP_003355355.1| - 0.054 12.7 0.0 0.086 12.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Guanylate_kin PF00625.21 gi|282162970|ref|YP_003355355.1| - 0.058 13.1 0.0 0.093 12.4 0.0 1.3 1 1 0 1 1 1 0 Guanylate kinase ABC_tran PF00005.27 gi|282162970|ref|YP_003355355.1| - 0.08 13.5 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 ABC transporter NTPase_1 PF03266.15 gi|282162970|ref|YP_003355355.1| - 0.11 12.4 0.1 0.2 11.6 0.1 1.4 1 0 0 1 1 1 0 NTPase BPS PF08947.10 gi|282162970|ref|YP_003355355.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.7 1 0 0 1 1 1 0 BPS (Between PH and SH2) DUF2073 PF09846.9 gi|282162971|ref|YP_003355356.1| - 3.8e-37 126.4 0.0 4.8e-37 126.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF2072 PF09845.9 gi|282162972|ref|YP_003355357.1| - 1.7e-39 135.1 0.3 2e-39 134.9 0.3 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|282162972|ref|YP_003355357.1| - 0.064 13.4 0.8 0.14 12.3 0.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|282162972|ref|YP_003355357.1| - 0.12 12.0 0.8 3.6 7.2 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|282162972|ref|YP_003355357.1| - 0.13 12.2 0.3 0.19 11.7 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 gi|282162972|ref|YP_003355357.1| - 0.24 11.3 1.8 0.67 9.9 1.8 1.7 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Ntox22 PF15527.6 gi|282162973|ref|YP_003355358.1| - 0.0056 16.7 1.0 0.013 15.6 0.6 1.7 1 1 1 2 2 2 1 Bacterial toxin 22 Rpr2 PF04032.16 gi|282162974|ref|YP_003355359.1| - 2.2e-16 59.9 0.0 2.9e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|282162974|ref|YP_003355359.1| - 0.025 14.6 0.5 0.068 13.2 0.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|282162974|ref|YP_003355359.1| - 0.041 13.6 1.2 1.9 8.3 0.1 2.4 2 1 0 2 2 2 0 A2L zinc ribbon domain DUF1411 PF07199.11 gi|282162974|ref|YP_003355359.1| - 0.18 11.5 0.0 0.23 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1411) DUF4674 PF15719.5 gi|282162974|ref|YP_003355359.1| - 0.28 11.2 3.0 0.86 9.6 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4674) Fer4_10 PF13237.6 gi|282162975|ref|YP_003355360.1| - 5.4e-12 45.6 13.9 8.8e-12 45.0 13.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282162975|ref|YP_003355360.1| - 1.6e-05 25.7 14.2 0.0001 23.2 14.2 2.1 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|282162975|ref|YP_003355360.1| - 8e-05 23.2 13.8 0.00014 22.3 13.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282162975|ref|YP_003355360.1| - 0.00045 19.9 4.1 0.00045 19.9 4.1 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282162975|ref|YP_003355360.1| - 0.0007 19.6 4.1 0.0007 19.6 4.1 3.0 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282162975|ref|YP_003355360.1| - 0.0041 17.2 14.7 0.032 14.4 14.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282162975|ref|YP_003355360.1| - 0.011 15.9 12.2 0.023 14.8 12.2 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Dehalogenase PF13486.6 gi|282162975|ref|YP_003355360.1| - 0.013 14.9 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Reductive dehalogenase subunit Fer4_2 PF12797.7 gi|282162975|ref|YP_003355360.1| - 0.036 14.2 3.2 0.036 14.2 3.2 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282162975|ref|YP_003355360.1| - 0.12 12.9 15.6 0.86 10.1 15.1 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|282162975|ref|YP_003355360.1| - 4.9 8.3 20.2 2.3 9.3 4.7 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain CarboxypepD_reg PF13620.6 gi|282162977|ref|YP_003355362.1| - 1.8e-09 37.7 0.6 1.8e-09 37.7 0.6 3.5 3 2 0 3 3 3 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|282162977|ref|YP_003355362.1| - 1.3e-06 28.3 4.8 2.2e-06 27.6 0.0 3.1 4 0 0 4 4 4 1 Bacterial Ig-like domain (group 1) CarbopepD_reg_2 PF13715.6 gi|282162977|ref|YP_003355362.1| - 0.0004 20.3 0.0 0.00084 19.3 0.0 1.6 1 0 0 1 1 1 1 CarboxypepD_reg-like domain Invasin_D3 PF09134.10 gi|282162977|ref|YP_003355362.1| - 0.00042 20.6 0.4 0.0016 18.7 0.0 2.1 2 0 0 2 2 2 1 Invasin, domain 3 CHB_HEX_C_1 PF13290.6 gi|282162977|ref|YP_003355362.1| - 0.037 14.0 0.4 0.14 12.2 0.4 2.1 1 1 0 1 1 1 0 Chitobiase/beta-hexosaminidase C-terminal domain Glyco_hydro2_C5 PF18565.1 gi|282162977|ref|YP_003355362.1| - 0.09 12.6 0.1 0.35 10.7 0.0 2.1 2 1 0 2 2 2 0 Glycoside hydrolase family 2 C-terminal domain 5 Flavin_Reduct PF01613.18 gi|282162978|ref|YP_003355363.1| - 2.7e-21 76.2 0.0 3.3e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain PHP PF02811.19 gi|282162979|ref|YP_003355364.1| - 6.6e-09 36.3 0.0 7.9e-09 36.0 0.0 1.3 1 1 0 1 1 1 1 PHP domain TatD_DNase PF01026.21 gi|282162979|ref|YP_003355364.1| - 0.12 11.7 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 TatD related DNase Invasin_D3 PF09134.10 gi|282162980|ref|YP_003355365.1| - 6.1e-11 42.5 19.1 1.4e-05 25.3 0.7 3.7 2 2 2 4 4 4 2 Invasin, domain 3 DZR PF12773.7 gi|282162980|ref|YP_003355365.1| - 4.2e-10 39.5 19.9 2.3e-07 30.7 10.7 2.1 1 1 2 3 3 3 3 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|282162980|ref|YP_003355365.1| - 3.6e-08 32.9 10.7 8.6e-05 22.1 2.4 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|282162980|ref|YP_003355365.1| - 3.7e-06 27.6 3.9 0.021 15.6 0.9 2.4 2 0 0 2 2 2 2 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|282162980|ref|YP_003355365.1| - 3.8e-06 26.1 2.3 3.8e-06 26.1 2.3 3.2 2 1 0 3 3 3 1 zinc-ribbon domain UPF0547 PF10571.9 gi|282162980|ref|YP_003355365.1| - 0.00011 22.2 3.8 0.00011 22.2 3.8 3.3 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 BatD PF13584.6 gi|282162980|ref|YP_003355365.1| - 0.0004 19.3 0.5 0.0006 18.8 0.5 1.2 1 0 0 1 1 1 1 Oxygen tolerance DUF35_N PF12172.8 gi|282162980|ref|YP_003355365.1| - 0.01 15.7 3.6 0.01 15.7 3.6 3.2 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Stevor PF17410.2 gi|282162980|ref|YP_003355365.1| - 0.021 14.4 0.3 0.021 14.4 0.3 1.5 2 0 0 2 2 2 0 Subtelomeric Variable Open Reading frame Peptidase_M56 PF05569.11 gi|282162980|ref|YP_003355365.1| - 0.07 12.3 0.1 0.12 11.5 0.1 1.3 1 0 0 1 1 1 0 BlaR1 peptidase M56 zf-tcix PF14952.6 gi|282162980|ref|YP_003355365.1| - 0.14 11.7 8.1 0.21 11.3 1.3 2.6 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding HypA PF01155.19 gi|282162980|ref|YP_003355365.1| - 0.18 11.8 8.0 0.59 10.2 0.9 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2321 PF10083.9 gi|282162980|ref|YP_003355365.1| - 0.57 9.8 2.4 1 9.0 2.4 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) zf-C3H2C3 PF17122.5 gi|282162980|ref|YP_003355365.1| - 1 9.5 6.6 13 5.9 0.3 2.5 2 0 0 2 2 2 0 Zinc-finger DUF4187 PF13821.6 gi|282162980|ref|YP_003355365.1| - 1.2 9.0 2.8 63 3.5 0.4 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4187) OppC_N PF12911.7 gi|282162980|ref|YP_003355365.1| - 5.8 7.0 7.3 10 6.2 0.3 2.7 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C NMD3 PF04981.13 gi|282162980|ref|YP_003355365.1| - 9.3 5.6 5.6 48 3.3 5.8 1.9 1 1 0 1 1 1 0 NMD3 family PgpA PF04608.13 gi|282162980|ref|YP_003355365.1| - 9.5 6.2 9.9 2.6 8.1 3.8 2.7 2 1 0 2 2 2 0 Phosphatidylglycerophosphatase A Phage_sheath_1 PF04984.14 gi|282162981|ref|YP_003355366.1| - 7.5e-20 71.5 0.0 3.9e-19 69.1 0.0 2.0 2 0 0 2 2 2 1 Phage tail sheath protein subtilisin-like domain Phage_sheath_1C PF17482.2 gi|282162981|ref|YP_003355366.1| - 1.3e-06 28.3 0.0 3e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 Phage tail sheath C-terminal domain Phage_sheath_1N PF17481.2 gi|282162981|ref|YP_003355366.1| - 0.0016 18.9 0.9 0.004 17.6 0.9 1.7 1 0 0 1 1 1 1 Phage tail sheath protein beta-sandwich domain Big_1 PF02369.16 gi|282162986|ref|YP_003355371.1| - 5e-19 68.1 22.2 4.8e-11 42.5 2.1 3.9 4 0 0 4 4 4 2 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|282162986|ref|YP_003355371.1| - 3.7e-12 46.4 21.8 4.2e-06 27.0 7.8 2.9 1 1 1 2 2 2 2 Invasin, domain 3 CarboxypepD_reg PF13620.6 gi|282162986|ref|YP_003355371.1| - 1.6e-08 34.7 17.9 3.8e-06 27.1 2.4 3.4 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain Big_3_5 PF16640.5 gi|282162986|ref|YP_003355371.1| - 1.7e-07 31.3 20.1 1.8e-05 24.8 5.9 2.8 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 3) YtkA PF13115.6 gi|282162986|ref|YP_003355371.1| - 5.1e-06 27.0 2.0 0.22 12.2 1.1 3.6 2 1 0 3 3 3 2 YtkA-like MG4 PF17789.1 gi|282162986|ref|YP_003355371.1| - 0.00017 21.7 0.9 0.0089 16.1 0.3 2.7 1 1 0 2 2 2 1 Macroglobulin domain MG4 DNA_circ_N PF07157.12 gi|282162986|ref|YP_003355371.1| - 0.00042 20.7 0.0 0.0011 19.3 0.0 1.7 1 0 0 1 1 1 1 DNA circularisation protein N-terminus MG2 PF01835.19 gi|282162986|ref|YP_003355371.1| - 0.00043 20.7 0.4 0.017 15.6 0.1 2.6 1 1 1 2 2 2 1 MG2 domain Big_6 PF17936.1 gi|282162986|ref|YP_003355371.1| - 0.001 19.3 15.1 0.19 12.0 1.5 3.8 1 1 2 3 3 3 3 Bacterial Ig domain DUF824 PF05688.11 gi|282162986|ref|YP_003355371.1| - 0.011 15.5 1.1 0.26 11.1 0.1 2.8 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) ComP_DUS PF16732.5 gi|282162986|ref|YP_003355371.1| - 0.015 16.1 5.2 2.6 9.0 0.5 2.7 2 0 0 2 2 2 0 Type IV minor pilin ComP, DNA uptake sequence receptor Y_Y_Y PF07495.13 gi|282162986|ref|YP_003355371.1| - 0.018 15.0 2.0 2.4 8.2 0.0 3.1 3 1 0 3 3 3 0 Y_Y_Y domain EMP24_GP25L PF01105.24 gi|282162986|ref|YP_003355371.1| - 0.019 14.9 1.3 0.032 14.2 0.3 1.8 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Big_7 PF17957.1 gi|282162986|ref|YP_003355371.1| - 0.056 14.2 14.5 0.69 10.7 2.8 3.0 2 0 0 2 2 2 0 Bacterial Ig domain Big_3 PF07523.12 gi|282162986|ref|YP_003355371.1| - 0.098 13.0 14.6 3.7 7.9 0.7 4.7 3 2 0 3 3 3 0 Bacterial Ig-like domain (group 3) Glyco_hydro2_C5 PF18565.1 gi|282162986|ref|YP_003355371.1| - 0.1 12.5 7.8 5.6 6.9 0.2 3.2 2 1 0 2 2 2 0 Glycoside hydrolase family 2 C-terminal domain 5 DUF4442 PF14539.6 gi|282162986|ref|YP_003355371.1| - 0.22 11.7 4.6 7.2 6.8 0.7 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4442) SpaA PF17802.1 gi|282162986|ref|YP_003355371.1| - 0.51 10.7 12.4 0.13 12.6 2.5 2.9 2 1 0 2 2 2 0 Prealbumin-like fold domain DUF5569 PF17729.1 gi|282162986|ref|YP_003355371.1| - 5.4 6.8 6.3 29 4.5 2.5 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5569) DUF2345 PF10106.9 gi|282162988|ref|YP_003355373.1| - 5.3e-07 29.6 3.6 5.3e-07 29.6 3.6 2.1 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2345) DUF3540 PF12059.8 gi|282162988|ref|YP_003355373.1| - 2.2e-05 24.4 4.5 0.064 13.1 0.8 3.2 2 1 1 3 3 3 2 Protein of unknown function (DUF3540) Sarcoglycan_1 PF04790.13 gi|282162988|ref|YP_003355373.1| - 0.00012 21.5 6.0 0.0082 15.5 1.4 2.3 1 1 1 2 2 2 2 Sarcoglycan complex subunit protein DIPSY PF11763.8 gi|282162988|ref|YP_003355373.1| - 0.03 14.5 0.1 0.059 13.5 0.1 1.5 1 0 0 1 1 1 0 Cell-wall adhesin ligand-binding C-terminal Fe-S_biosyn PF01521.20 gi|282162988|ref|YP_003355373.1| - 0.057 13.6 0.2 0.095 12.9 0.2 1.4 1 0 0 1 1 1 0 Iron-sulphur cluster biosynthesis PAW PF04721.17 gi|282162988|ref|YP_003355373.1| - 0.29 10.9 1.9 0.33 10.7 0.7 1.5 1 1 1 2 2 2 0 PNGase C-terminal domain, mannose-binding module PAW Calycin_like PF13944.6 gi|282162988|ref|YP_003355373.1| - 0.58 10.5 9.4 1.1 9.5 9.4 1.5 1 0 0 1 1 1 0 Calycin-like beta-barrel domain PAAR_motif PF05488.13 gi|282162989|ref|YP_003355374.1| - 2.5e-19 69.2 13.4 1.5e-12 47.5 6.0 2.8 2 1 1 3 3 3 3 PAAR motif DUF4150 PF13665.6 gi|282162989|ref|YP_003355374.1| - 5e-06 26.6 6.2 1.4e-05 25.2 6.1 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4150) DUF2634 PF10934.8 gi|282162990|ref|YP_003355375.1| - 1.6e-08 34.6 0.0 2.6e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2634) GPW_gp25 PF04965.14 gi|282162990|ref|YP_003355375.1| - 0.001 18.8 0.0 0.0013 18.5 0.0 1.2 1 0 0 1 1 1 1 Gene 25-like lysozyme Baseplate_J PF04865.14 gi|282162991|ref|YP_003355376.1| - 2.8e-29 102.1 5.9 1.7e-24 86.4 3.0 2.2 2 0 0 2 2 2 2 Baseplate J-like protein DUF4815 PF16075.5 gi|282162991|ref|YP_003355376.1| - 4.2e-07 28.7 1.5 3.3e-06 25.7 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4815) MmgE_PrpD PF03972.14 gi|282162991|ref|YP_003355376.1| - 0.003 16.2 0.0 0.0053 15.4 0.0 1.3 1 0 0 1 1 1 1 MmgE/PrpD family HA1 PF18239.1 gi|282162992|ref|YP_003355377.1| - 0.029 14.2 0.2 1 9.2 0.0 3.2 3 1 0 3 3 3 0 Hemagglutinin I Tail_P2_I PF09684.10 gi|282162992|ref|YP_003355377.1| - 0.068 13.1 0.0 0.59 10.1 0.0 2.0 2 0 0 2 2 2 0 Phage tail protein (Tail_P2_I) Big_1 PF02369.16 gi|282162995|ref|YP_003355380.1| - 1.7e-23 82.4 41.0 2.8e-09 36.8 6.6 6.9 6 0 0 6 6 6 3 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|282162995|ref|YP_003355380.1| - 2e-18 66.4 52.9 0.0014 18.9 3.0 9.6 9 1 0 9 9 9 5 Invasin, domain 3 Calx-beta PF03160.14 gi|282162995|ref|YP_003355380.1| - 6e-18 64.9 17.6 0.00066 19.8 0.2 7.3 6 1 0 6 6 6 5 Calx-beta domain YtkA PF13115.6 gi|282162995|ref|YP_003355380.1| - 1.1e-08 35.6 6.3 0.21 12.2 0.3 5.1 4 0 0 4 4 4 3 YtkA-like bMG3 PF11974.8 gi|282162995|ref|YP_003355380.1| - 7.7e-08 32.3 6.3 0.17 11.9 0.0 4.4 5 0 0 5 5 4 3 Bacterial alpha-2-macroglobulin MG3 domain DZR PF12773.7 gi|282162995|ref|YP_003355380.1| - 0.018 15.1 0.7 0.034 14.2 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon NinF PF05810.12 gi|282162995|ref|YP_003355380.1| - 0.037 13.9 0.0 0.075 12.9 0.0 1.4 1 0 0 1 1 1 0 NinF protein Filamin PF00630.19 gi|282162995|ref|YP_003355380.1| - 0.048 14.5 8.7 0.15 12.9 0.1 5.1 5 2 0 5 5 5 0 Filamin/ABP280 repeat SCP2_2 PF13530.6 gi|282162995|ref|YP_003355380.1| - 0.082 13.3 0.0 29 5.1 0.0 4.0 4 1 0 4 4 4 0 Sterol carrier protein domain zinc_ribbon_2 PF13240.6 gi|282162995|ref|YP_003355380.1| - 0.4 10.5 2.4 1 9.2 2.4 1.7 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|282162995|ref|YP_003355380.1| - 1 8.9 9.8 0.55 9.7 6.6 2.2 2 1 1 3 3 3 0 zinc-ribbon domain Big_1 PF02369.16 gi|282162996|ref|YP_003355381.1| - 1.7e-28 98.4 44.0 3.6e-07 30.1 3.3 7.5 6 2 0 6 6 6 5 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|282162996|ref|YP_003355381.1| - 8.7e-20 70.8 53.1 6.5e-07 29.6 1.3 6.6 5 1 1 6 6 6 6 Invasin, domain 3 YtkA PF13115.6 gi|282162996|ref|YP_003355381.1| - 1.9e-13 50.8 7.5 0.012 16.1 0.0 6.0 6 0 0 6 6 5 3 YtkA-like DZR PF12773.7 gi|282162996|ref|YP_003355381.1| - 2.8e-08 33.7 13.5 4.7e-08 32.9 13.5 1.4 1 0 0 1 1 1 1 Double zinc ribbon DUF4198 PF10670.9 gi|282162996|ref|YP_003355381.1| - 3.7e-08 34.0 4.9 0.29 11.5 0.0 4.8 4 1 1 5 5 5 2 Domain of unknown function (DUF4198) zinc_ribbon_2 PF13240.6 gi|282162996|ref|YP_003355381.1| - 1.3e-07 31.1 10.0 0.00063 19.4 1.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain bMG3 PF11974.8 gi|282162996|ref|YP_003355381.1| - 1.5e-07 31.4 7.5 0.32 11.0 0.2 5.2 4 1 1 5 5 5 3 Bacterial alpha-2-macroglobulin MG3 domain zf-ribbon_3 PF13248.6 gi|282162996|ref|YP_003355381.1| - 1.3e-05 24.4 12.7 0.01 15.2 1.9 2.5 2 0 0 2 2 2 2 zinc-ribbon domain Lactonase PF10282.9 gi|282162996|ref|YP_003355381.1| - 3.6e-05 23.2 0.1 0.00016 21.1 0.2 2.0 2 0 0 2 2 2 1 Lactonase, 7-bladed beta-propeller zinc_ribbon_15 PF17032.5 gi|282162996|ref|YP_003355381.1| - 5.4e-05 23.9 4.7 0.054 14.3 1.7 2.4 2 0 0 2 2 2 2 zinc-ribbon family Cytochrom_D1 PF02239.16 gi|282162996|ref|YP_003355381.1| - 0.00059 18.5 0.1 2.1 6.8 0.0 3.3 2 1 1 3 3 3 1 Cytochrome D1 heme domain ChitinaseA_N PF08329.10 gi|282162996|ref|YP_003355381.1| - 0.00093 18.8 2.7 1.1 8.9 0.1 3.7 2 1 1 3 3 3 1 Chitinase A, N-terminal domain FixG_C PF11614.8 gi|282162996|ref|YP_003355381.1| - 0.0012 19.0 4.5 0.42 10.8 0.0 4.5 4 0 0 4 4 4 1 IG-like fold at C-terminal of FixG, putative oxidoreductase Filamin PF00630.19 gi|282162996|ref|YP_003355381.1| - 0.0015 19.3 0.0 2.6 8.9 0.0 3.7 3 2 0 3 3 2 1 Filamin/ABP280 repeat DUF4221 PF13970.6 gi|282162996|ref|YP_003355381.1| - 0.042 13.4 0.1 1.6 8.2 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4221) DUF1416 PF07210.12 gi|282162996|ref|YP_003355381.1| - 0.056 13.3 10.5 3.1 7.8 0.1 4.8 4 1 1 5 5 5 0 Protein of unknown function (DUF1416) Glyco_hydro2_C5 PF18565.1 gi|282162996|ref|YP_003355381.1| - 0.058 13.2 6.4 0.085 12.7 0.0 4.2 5 1 0 5 5 5 0 Glycoside hydrolase family 2 C-terminal domain 5 UPF0547 PF10571.9 gi|282162996|ref|YP_003355381.1| - 0.14 12.3 14.3 0.26 11.4 4.7 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 MLANA PF14991.6 gi|282162996|ref|YP_003355381.1| - 0.28 11.5 2.7 1.3 9.3 0.2 2.4 2 0 0 2 2 2 0 Protein melan-A YhfH PF14149.6 gi|282162996|ref|YP_003355381.1| - 0.48 10.5 16.9 1.9 8.5 4.2 3.5 2 2 1 3 3 3 0 YhfH-like protein TackOD1 PF18551.1 gi|282162996|ref|YP_003355381.1| - 0.49 10.0 4.3 0.85 9.3 4.3 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DUF2207 PF09972.9 gi|282162996|ref|YP_003355381.1| - 0.68 8.6 4.0 0.11 11.3 0.1 1.6 2 0 0 2 2 1 0 Predicted membrane protein (DUF2207) DUF2321 PF10083.9 gi|282162996|ref|YP_003355381.1| - 0.89 9.2 4.4 1.8 8.2 4.4 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) HypA PF01155.19 gi|282162996|ref|YP_003355381.1| - 0.93 9.5 8.8 1.4 9.0 0.6 2.6 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PHF5 PF03660.14 gi|282162996|ref|YP_003355381.1| - 1.4 9.2 4.6 4.3 7.6 4.6 1.8 1 1 0 1 1 1 0 PHF5-like protein PknG_rubred PF16919.5 gi|282162996|ref|YP_003355381.1| - 1.4 9.1 5.6 20 5.3 0.4 2.5 1 1 1 2 2 2 0 Protein kinase G rubredoxin domain NOB1_Zn_bind PF08772.11 gi|282162996|ref|YP_003355381.1| - 1.4 9.1 11.5 1.1 9.5 1.7 3.4 3 1 1 4 4 3 0 Nin one binding (NOB1) Zn-ribbon like PQQ_3 PF13570.6 gi|282162996|ref|YP_003355381.1| - 1.5 9.4 3.8 4.8 7.8 0.0 4.1 3 0 0 3 3 1 0 PQQ-like domain OCD_Mu_crystall PF02423.15 gi|282162997|ref|YP_003355382.1| - 6.7e-108 360.4 0.3 8.2e-108 360.1 0.3 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|282162997|ref|YP_003355382.1| - 0.00024 21.2 0.0 0.00046 20.3 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|282162997|ref|YP_003355382.1| - 0.0017 19.1 0.1 0.0032 18.3 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Rubrerythrin PF02915.17 gi|282162998|ref|YP_003355383.1| - 2.5e-36 125.1 3.7 3.7e-36 124.5 3.7 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|282162998|ref|YP_003355383.1| - 9.8e-11 41.8 1.7 1.3e-10 41.3 1.7 1.2 1 0 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.12 gi|282162998|ref|YP_003355383.1| - 0.016 15.2 4.9 0.027 14.5 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF892) zf-C2HC5 PF06221.13 gi|282162998|ref|YP_003355383.1| - 0.048 13.6 0.2 0.083 12.9 0.2 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type TFIIS_C PF01096.18 gi|282162998|ref|YP_003355383.1| - 0.056 13.3 1.5 1.1 9.1 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Condensin2nSMC PF12422.8 gi|282162998|ref|YP_003355383.1| - 0.063 13.5 0.0 0.093 12.9 0.0 1.3 1 0 0 1 1 1 0 Condensin II non structural maintenance of chromosomes subunit YecM PF06185.12 gi|282162998|ref|YP_003355383.1| - 0.097 12.3 0.1 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 YecM protein HypA PF01155.19 gi|282162998|ref|YP_003355383.1| - 0.1 12.7 0.2 0.22 11.6 0.2 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|282162998|ref|YP_003355383.1| - 0.13 11.9 0.8 0.29 10.8 0.2 1.7 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 Oberon_cc PF16312.5 gi|282162998|ref|YP_003355383.1| - 0.14 12.1 0.7 0.84 9.6 0.1 2.2 2 1 0 2 2 2 0 Coiled-coil region of Oberon zf-NADH-PPase PF09297.11 gi|282162998|ref|YP_003355383.1| - 0.36 10.5 3.5 7 6.4 0.1 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain V4R PF02830.18 gi|282162999|ref|YP_003355384.1| - 5.7e-19 67.9 1.2 9e-19 67.3 0.7 1.6 2 0 0 2 2 2 1 V4R domain HTH_5 PF01022.20 gi|282162999|ref|YP_003355384.1| - 4.8e-10 39.2 0.1 7.6e-10 38.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|282162999|ref|YP_003355384.1| - 1.3e-08 34.8 0.0 2.8e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|282162999|ref|YP_003355384.1| - 2.7e-06 27.2 0.1 4.5e-06 26.5 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|282162999|ref|YP_003355384.1| - 6.6e-05 22.7 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|282162999|ref|YP_003355384.1| - 0.00022 21.0 0.0 0.0004 20.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|282162999|ref|YP_003355384.1| - 0.0061 16.4 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_IclR PF09339.10 gi|282162999|ref|YP_003355384.1| - 0.0095 15.7 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_40 PF14493.6 gi|282162999|ref|YP_003355384.1| - 0.012 16.1 0.0 0.02 15.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|282162999|ref|YP_003355384.1| - 0.023 14.3 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|282162999|ref|YP_003355384.1| - 0.029 14.6 0.0 0.052 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain ATC_hydrolase PF14196.6 gi|282162999|ref|YP_003355384.1| - 0.48 11.2 3.4 0.39 11.5 1.9 1.6 2 0 0 2 2 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Trypsin_2 PF13365.6 gi|282163000|ref|YP_003355385.1| - 2.7e-32 112.7 1.4 4.4e-32 112.1 1.4 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|282163000|ref|YP_003355385.1| - 8e-15 54.9 0.3 3.6e-14 52.8 0.0 2.1 2 0 0 2 2 2 1 PDZ domain Trypsin PF00089.26 gi|282163000|ref|YP_003355385.1| - 3.2e-14 53.3 0.2 7.8e-14 52.0 0.2 1.6 1 1 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 gi|282163000|ref|YP_003355385.1| - 1.3e-09 37.7 0.0 3.3e-09 36.4 0.0 1.7 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|282163000|ref|YP_003355385.1| - 4.4e-08 33.4 0.0 1.9e-07 31.3 0.0 2.1 1 0 0 1 1 1 1 PDZ domain Peptidase_S46 PF10459.9 gi|282163000|ref|YP_003355385.1| - 2.8e-06 26.3 1.7 0.0007 18.4 0.3 2.2 2 0 0 2 2 2 2 Peptidase S46 Tricorn_PDZ PF14685.6 gi|282163000|ref|YP_003355385.1| - 0.0015 18.5 0.1 0.0038 17.2 0.1 1.7 1 0 0 1 1 1 1 Tricorn protease PDZ domain PDZ_1 PF12812.7 gi|282163000|ref|YP_003355385.1| - 0.0034 17.3 0.0 0.0083 16.1 0.0 1.6 1 0 0 1 1 1 1 PDZ-like domain Peptidase_S7 PF00949.21 gi|282163000|ref|YP_003355385.1| - 0.1 12.4 0.4 0.41 10.5 0.1 2.0 2 0 0 2 2 2 0 Peptidase S7, Flavivirus NS3 serine protease Big_7 PF17957.1 gi|282163001|ref|YP_003355386.1| - 9.9e-07 29.4 21.7 0.0036 18.0 0.4 4.5 4 0 0 4 4 4 3 Bacterial Ig domain Big_3_3 PF13750.6 gi|282163001|ref|YP_003355386.1| - 0.0002 21.1 2.2 0.35 10.5 0.0 3.7 4 0 0 4 4 4 2 Bacterial Ig-like domain (group 3) HYR PF02494.16 gi|282163001|ref|YP_003355386.1| - 0.01 16.1 6.4 12 6.3 0.0 4.9 4 2 0 4 4 4 0 HYR domain DUF4366 PF14283.6 gi|282163001|ref|YP_003355386.1| - 0.022 14.8 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Big_3_2 PF12245.8 gi|282163001|ref|YP_003355386.1| - 0.025 14.9 7.1 6.7 7.0 0.0 4.0 1 1 1 2 2 2 0 Bacterial Ig-like domain F5_F8_type_C PF00754.25 gi|282163001|ref|YP_003355386.1| - 0.079 13.1 10.4 0.76 9.9 0.1 4.0 4 0 0 4 4 4 0 F5/8 type C domain PT PF04886.12 gi|282163001|ref|YP_003355386.1| - 4.4 6.9 27.4 9.2 5.9 27.4 1.5 1 0 0 1 1 1 0 PT repeat Orf78 PF06024.12 gi|282163002|ref|YP_003355387.1| - 0.81 10.0 3.5 7.2 7.0 0.2 2.6 2 0 0 2 2 2 0 Orf78 (ac78) EIIBC-GUT_C PF07663.11 gi|282163003|ref|YP_003355388.1| - 0.49 10.6 9.1 0.12 12.5 0.8 2.9 2 1 1 3 3 3 0 Sorbitol phosphotransferase enzyme II C-terminus DUF677 PF05055.12 gi|282163003|ref|YP_003355388.1| - 5.8 5.7 4.5 12 4.6 4.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF677) MazG PF03819.17 gi|282163004|ref|YP_003355389.1| - 5.5e-14 52.1 0.0 7.9e-14 51.6 0.0 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|282163004|ref|YP_003355389.1| - 1.6e-05 25.1 0.1 2.2e-05 24.6 0.1 1.2 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|282163004|ref|YP_003355389.1| - 0.00097 19.5 0.2 0.0013 19.2 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase dUTPase_2 PF08761.11 gi|282163004|ref|YP_003355389.1| - 0.027 14.7 0.4 0.039 14.1 0.4 1.3 1 1 0 1 1 1 0 dUTPase His_biosynth PF00977.21 gi|282163005|ref|YP_003355390.1| - 2.2e-87 292.3 0.9 2.5e-87 292.1 0.9 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|282163005|ref|YP_003355390.1| - 6.8e-07 29.0 1.7 0.015 14.7 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase IMPDH PF00478.25 gi|282163005|ref|YP_003355390.1| - 0.0001 21.5 1.4 0.019 14.0 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain Dus PF01207.17 gi|282163005|ref|YP_003355390.1| - 0.0001 21.5 0.3 0.018 14.2 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|282163005|ref|YP_003355390.1| - 0.00023 20.6 0.8 0.018 14.5 0.2 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|282163005|ref|YP_003355390.1| - 0.00026 20.4 0.6 0.27 10.5 0.1 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase ThiG PF05690.14 gi|282163005|ref|YP_003355390.1| - 0.0003 20.2 0.4 0.57 9.4 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.17 gi|282163005|ref|YP_003355390.1| - 0.16 11.4 1.2 0.45 9.9 0.1 2.2 2 1 1 3 3 3 0 PcrB family Yip1 PF04893.17 gi|282163006|ref|YP_003355391.1| - 0.0017 18.1 23.3 0.0017 18.1 23.3 2.5 2 0 0 2 2 2 1 Yip1 domain ATP-synt_D PF01813.17 gi|282163007|ref|YP_003355392.1| - 8.1e-51 172.7 11.4 9.1e-51 172.5 11.4 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF3368 PF11848.8 gi|282163007|ref|YP_003355392.1| - 0.26 11.1 1.8 43 4.0 0.1 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF3368) ATP-synt_ab PF00006.25 gi|282163008|ref|YP_003355393.1| - 6.1e-67 225.4 0.0 8.1e-67 225.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|282163008|ref|YP_003355393.1| - 8.5e-14 51.8 0.7 2e-13 50.6 0.7 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|282163008|ref|YP_003355393.1| - 0.0017 18.5 0.5 0.0046 17.1 0.5 1.8 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.25 gi|282163009|ref|YP_003355394.1| - 2.2e-95 318.4 0.0 4.5e-95 317.3 0.0 1.6 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|282163009|ref|YP_003355394.1| - 3e-40 136.9 0.0 5.3e-40 136.1 0.0 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|282163009|ref|YP_003355394.1| - 1.7e-13 50.9 1.1 1.7e-13 50.9 1.1 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|282163009|ref|YP_003355394.1| - 0.022 15.0 0.0 0.05 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.22 gi|282163009|ref|YP_003355394.1| - 0.11 12.7 0.1 7.6 6.8 0.0 2.8 2 0 0 2 2 2 0 Peptidase family M23 DUF1932 PF09130.11 gi|282163009|ref|YP_003355394.1| - 0.62 10.1 2.4 2.2 8.3 0.5 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF1932) ATP-synt_F PF01990.17 gi|282163010|ref|YP_003355395.1| - 4.3e-17 62.2 0.2 4.8e-17 62.0 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit SIS PF01380.22 gi|282163010|ref|YP_003355395.1| - 0.19 11.6 0.0 0.24 11.3 0.0 1.1 1 0 0 1 1 1 0 SIS domain vATP-synt_AC39 PF01992.16 gi|282163011|ref|YP_003355396.1| - 2.1e-79 267.5 1.4 2.4e-79 267.3 1.4 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.18 gi|282163012|ref|YP_003355397.1| - 5.3e-24 84.7 15.2 2.2e-22 79.5 15.2 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.18 gi|282163012|ref|YP_003355397.1| - 0.19 11.8 13.3 0.32 11.1 13.3 1.3 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) ATP-synt_C PF00137.21 gi|282163013|ref|YP_003355398.1| - 1.3e-16 60.7 11.8 1.5e-16 60.4 11.8 1.1 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.19 gi|282163014|ref|YP_003355399.1| - 6.1e-26 90.6 6.2 2e-15 55.9 0.1 2.8 3 0 0 3 3 3 2 V-type ATPase 116kDa subunit family OST_P2 PF18235.1 gi|282163014|ref|YP_003355399.1| - 0.053 13.5 0.1 0.15 12.0 0.1 1.8 2 0 0 2 2 2 0 Oligosaccharyltransferase Peripheral 2 domain ATP-synt_B PF00430.18 gi|282163015|ref|YP_003355400.1| - 0.0022 18.1 29.2 0.024 14.7 27.6 1.9 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) V-ATPase_G_2 PF16999.5 gi|282163015|ref|YP_003355400.1| - 0.0024 18.2 26.8 0.003 18.0 26.8 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit HrpE PF06188.12 gi|282163015|ref|YP_003355400.1| - 0.24 11.3 11.1 0.29 11.0 11.1 1.1 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Microtub_bind PF13931.6 gi|282163015|ref|YP_003355400.1| - 1 9.7 5.8 1.2 9.5 5.8 1.1 1 0 0 1 1 1 0 Kinesin-associated microtubule-binding MAT1 PF06391.13 gi|282163015|ref|YP_003355400.1| - 2.9 7.7 12.6 3.3 7.5 12.6 1.1 1 0 0 1 1 1 0 CDK-activating kinase assembly factor MAT1 Sec62 PF03839.16 gi|282163015|ref|YP_003355400.1| - 3 7.3 9.2 3.5 7.1 9.2 1.0 1 0 0 1 1 1 0 Translocation protein Sec62 TP53IP5 PF15331.6 gi|282163015|ref|YP_003355400.1| - 3.5 7.7 9.2 3.9 7.6 9.2 1.1 1 0 0 1 1 1 0 Cellular tumour antigen p53-inducible 5 DUF3886 PF13025.6 gi|282163015|ref|YP_003355400.1| - 4.5 7.5 20.6 1.5 9.1 8.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3886) XRN_M PF17846.1 gi|282163015|ref|YP_003355400.1| - 7.3 5.4 9.8 8.5 5.2 9.8 1.0 1 0 0 1 1 1 0 Xrn1 helical domain DUF4010 PF13194.6 gi|282163016|ref|YP_003355401.1| - 5.2e-52 176.6 22.4 5.2e-52 176.6 22.4 3.1 3 1 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|282163016|ref|YP_003355401.1| - 2.6e-21 76.2 8.1 2.6e-21 76.2 8.1 4.1 2 1 1 3 3 3 1 MgtC family DUF5350 PF17299.2 gi|282163017|ref|YP_003355402.1| - 1.3e-26 92.9 1.2 1.5e-26 92.6 1.2 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5350) DHHA1 PF02272.19 gi|282163018|ref|YP_003355403.1| - 2.2e-12 47.5 1.6 5.2e-12 46.4 1.6 1.8 1 1 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|282163018|ref|YP_003355403.1| - 3.4e-07 30.4 0.0 6.4e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 DHH family Pribosyltran_N PF13793.6 gi|282163019|ref|YP_003355404.1| - 9e-26 90.1 0.0 1.2e-21 76.9 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|282163019|ref|YP_003355404.1| - 5.7e-19 68.2 1.9 1.8e-16 60.1 0.3 2.6 3 0 0 3 3 3 2 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|282163019|ref|YP_003355404.1| - 1.3e-10 41.7 0.2 5.5e-10 39.6 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|282163019|ref|YP_003355404.1| - 0.0018 17.8 0.0 0.0032 17.0 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|282163019|ref|YP_003355404.1| - 0.0096 15.4 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase Pilus_CpaD PF09476.10 gi|282163019|ref|YP_003355404.1| - 0.064 13.0 0.1 0.23 11.2 0.0 1.8 2 0 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) eIF2_C PF09173.11 gi|282163020|ref|YP_003355405.1| - 6.4e-32 109.7 0.5 1.6e-31 108.4 0.5 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|282163020|ref|YP_003355405.1| - 8.9e-30 103.7 1.5 8.4e-29 100.5 1.5 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|282163020|ref|YP_003355405.1| - 5.5e-05 23.1 1.7 0.00042 20.3 0.2 2.3 2 0 0 2 2 2 1 RsgA GTPase GTP_EFTU_D2 PF03144.25 gi|282163020|ref|YP_003355405.1| - 0.00027 21.2 0.5 0.00027 21.2 0.5 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|282163020|ref|YP_003355405.1| - 0.0025 17.9 0.0 0.0078 16.3 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|282163020|ref|YP_003355405.1| - 0.01 15.8 0.3 0.022 14.8 0.3 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|282163020|ref|YP_003355405.1| - 0.01 15.6 3.4 2 8.2 0.6 2.9 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|282163020|ref|YP_003355405.1| - 0.05 13.1 1.2 6.8 6.2 0.3 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B PIN_9 PF18477.1 gi|282163021|ref|YP_003355406.1| - 1.7e-42 144.4 0.8 2e-42 144.2 0.8 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|282163021|ref|YP_003355406.1| - 0.006 16.9 0.1 0.0089 16.4 0.1 1.2 1 0 0 1 1 1 1 Fcf1 5_3_exonuc_N PF02739.16 gi|282163021|ref|YP_003355406.1| - 0.015 15.2 0.4 0.59 10.0 0.2 2.0 1 1 1 2 2 2 0 5'-3' exonuclease, N-terminal resolvase-like domain PIN_5 PF08745.11 gi|282163021|ref|YP_003355406.1| - 0.024 14.1 0.1 0.5 9.8 0.0 2.0 1 1 1 2 2 2 0 PINc domain ribonuclease PIN_4 PF13638.6 gi|282163021|ref|YP_003355406.1| - 0.045 14.0 0.1 0.25 11.6 0.1 1.9 1 1 0 1 1 1 0 PIN domain SHS2_Rpb7-N PF03876.17 gi|282163022|ref|YP_003355407.1| - 1.1e-19 70.5 0.3 2.2e-19 69.6 0.2 1.6 2 0 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|282163022|ref|YP_003355407.1| - 2.4e-11 43.8 0.3 5.4e-11 42.7 0.3 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|282163022|ref|YP_003355407.1| - 0.044 14.0 0.2 0.073 13.3 0.1 1.5 2 0 0 2 2 2 0 RNA polymerase III subunit Rpc25 IDEAL PF08858.10 gi|282163022|ref|YP_003355407.1| - 0.089 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 IDEAL domain Lactamase_B PF00753.27 gi|282163023|ref|YP_003355408.1| - 0.00084 19.4 4.3 0.0045 17.0 4.3 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|282163023|ref|YP_003355408.1| - 0.00096 18.7 0.1 0.0017 17.9 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|282163023|ref|YP_003355408.1| - 0.016 15.1 0.1 0.036 13.9 0.0 1.5 2 0 0 2 2 2 0 Beta-lactamase superfamily domain SEEK1 PF15357.6 gi|282163023|ref|YP_003355408.1| - 0.14 12.3 0.1 0.3 11.2 0.0 1.5 2 0 0 2 2 2 0 Psoriasis susceptibility 1 candidate 1 HATPase_c PF02518.26 gi|282163024|ref|YP_003355409.1| - 7.5e-18 65.1 0.0 1.4e-17 64.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|282163024|ref|YP_003355409.1| - 1.1e-15 57.8 0.0 2.3e-10 40.6 0.0 2.8 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|282163024|ref|YP_003355409.1| - 9.3e-15 54.7 0.0 1.9e-10 40.9 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|282163024|ref|YP_003355409.1| - 5.6e-12 45.7 0.0 8e-07 29.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|282163024|ref|YP_003355409.1| - 7.7e-11 41.8 0.0 2.6e-06 27.3 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|282163024|ref|YP_003355409.1| - 3.1e-05 24.2 0.0 0.00093 19.4 0.0 2.4 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|282163024|ref|YP_003355409.1| - 0.0011 19.0 0.0 0.0025 17.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain YhhN PF07947.14 gi|282163024|ref|YP_003355409.1| - 0.005 16.5 1.6 0.0083 15.8 1.6 1.3 1 0 0 1 1 1 1 YhhN family DUF2681 PF10883.8 gi|282163024|ref|YP_003355409.1| - 0.0054 17.1 1.2 0.95 9.9 0.1 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2681) HisKA PF00512.25 gi|282163024|ref|YP_003355409.1| - 0.01 15.8 0.2 0.028 14.4 0.2 1.7 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain PAS_12 PF18095.1 gi|282163024|ref|YP_003355409.1| - 0.051 13.2 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain HATPase_c_5 PF14501.6 gi|282163024|ref|YP_003355409.1| - 0.092 12.7 0.1 0.28 11.1 0.1 1.8 1 1 0 1 1 1 0 GHKL domain 7TMR-DISM_7TM PF07695.11 gi|282163024|ref|YP_003355409.1| - 0.1 12.5 6.4 0.23 11.3 6.4 1.5 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF981 PF06168.11 gi|282163024|ref|YP_003355409.1| - 0.14 12.1 6.0 0.2 11.5 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF981) DUF2142 PF09913.9 gi|282163024|ref|YP_003355409.1| - 0.15 10.9 3.7 0.23 10.3 3.7 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) MASE3 PF17159.4 gi|282163024|ref|YP_003355409.1| - 0.2 11.3 6.0 0.39 10.3 6.0 1.4 1 1 0 1 1 1 0 Membrane-associated sensor domain DUF2304 PF10066.9 gi|282163024|ref|YP_003355409.1| - 0.21 11.8 3.0 0.42 10.8 3.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) CREPT PF16566.5 gi|282163024|ref|YP_003355409.1| - 0.25 11.5 1.3 0.51 10.5 0.4 1.9 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Cupin_2 PF07883.11 gi|282163025|ref|YP_003355410.1| - 2.9e-14 52.5 0.0 5e-14 51.8 0.0 1.4 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|282163025|ref|YP_003355410.1| - 2.8e-06 27.3 0.0 3.1e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Ectoine_synth PF06339.12 gi|282163025|ref|YP_003355410.1| - 4.9e-05 23.5 0.0 6.2e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase AraC_binding PF02311.19 gi|282163025|ref|YP_003355410.1| - 0.00036 20.4 0.1 0.00045 20.1 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|282163025|ref|YP_003355410.1| - 0.0017 17.9 0.0 0.0045 16.6 0.0 1.6 1 1 0 1 1 1 1 Cupin DMSP_lyase PF16867.5 gi|282163025|ref|YP_003355410.1| - 0.089 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Lactamase_B PF00753.27 gi|282163026|ref|YP_003355411.1| - 2.2e-13 50.7 0.1 3.2e-13 50.2 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|282163026|ref|YP_003355411.1| - 0.0013 18.2 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|282163026|ref|YP_003355411.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain HATPase_c PF02518.26 gi|282163027|ref|YP_003355412.1| - 8.6e-21 74.5 0.0 3.4e-20 72.6 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|282163027|ref|YP_003355412.1| - 8.2e-19 67.7 0.0 1.3e-17 63.8 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|282163027|ref|YP_003355412.1| - 9.1e-11 41.9 0.0 2e-10 40.8 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|282163027|ref|YP_003355412.1| - 3.5e-07 30.2 0.0 1.3e-06 28.4 0.0 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|282163027|ref|YP_003355412.1| - 0.00022 21.2 0.0 0.00085 19.3 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|282163027|ref|YP_003355412.1| - 0.002 18.0 0.1 0.017 15.0 0.1 2.4 1 1 0 1 1 1 1 GHKL domain PAS_4 PF08448.10 gi|282163027|ref|YP_003355412.1| - 0.017 15.4 0.0 0.034 14.4 0.0 1.6 1 0 0 1 1 1 0 PAS fold PAS_8 PF13188.7 gi|282163027|ref|YP_003355412.1| - 0.018 15.0 0.0 0.043 13.8 0.0 1.6 1 0 0 1 1 1 0 PAS domain Peptidase_M48 PF01435.18 gi|282163028|ref|YP_003355413.1| - 1.4e-18 67.4 0.0 6.2e-14 52.2 0.0 2.3 2 0 0 2 2 2 2 Peptidase family M48 Peptidase_M56 PF05569.11 gi|282163028|ref|YP_003355413.1| - 0.0028 16.9 0.7 0.0078 15.4 0.1 2.1 1 1 1 2 2 2 1 BlaR1 peptidase M56 HEAT_2 PF13646.6 gi|282163030|ref|YP_003355415.1| - 5.4e-16 58.8 0.4 8.7e-16 58.1 0.4 1.4 1 0 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.16 gi|282163030|ref|YP_003355415.1| - 2.9e-09 36.7 9.5 6e-05 23.4 0.3 3.5 5 0 0 5 5 5 2 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|282163030|ref|YP_003355415.1| - 3.4e-07 30.0 0.1 4.3e-06 26.5 0.0 3.3 5 0 0 5 5 5 2 HEAT repeat Cnd1 PF12717.7 gi|282163030|ref|YP_003355415.1| - 3.9e-05 23.8 0.1 0.19 11.7 0.0 2.6 2 1 1 3 3 3 2 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|282163030|ref|YP_003355415.1| - 0.00036 20.5 0.5 0.0035 17.3 0.0 2.8 3 1 1 4 4 4 1 Armadillo/beta-catenin-like repeat Aconitase_B_N PF11791.8 gi|282163030|ref|YP_003355415.1| - 0.0023 18.0 0.0 0.0034 17.4 0.0 1.3 1 0 0 1 1 1 1 Aconitate B N-terminal domain HEAT_EZ PF13513.6 gi|282163030|ref|YP_003355415.1| - 0.0094 16.4 0.4 0.0094 16.4 0.4 3.2 3 2 1 4 4 4 1 HEAT-like repeat CbiX PF01903.17 gi|282163031|ref|YP_003355416.1| - 1.7e-25 89.4 0.0 2e-25 89.2 0.0 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|282163031|ref|YP_003355416.1| - 1.9e-06 27.4 0.0 2.2e-06 27.2 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|282163031|ref|YP_003355416.1| - 0.00017 20.7 0.0 0.00018 20.7 0.0 1.2 1 0 0 1 1 1 1 Ferrochelatase Mur_ligase_M PF08245.12 gi|282163032|ref|YP_003355417.1| - 0.00019 21.5 0.0 0.00027 21.0 0.0 1.2 1 0 0 1 1 1 1 Mur ligase middle domain Oxidored_nitro PF00148.19 gi|282163033|ref|YP_003355418.1| - 1.7e-18 66.6 0.2 2.3e-18 66.1 0.2 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.18 gi|282163034|ref|YP_003355419.1| - 8.4e-90 300.9 1.4 9.5e-90 300.7 1.4 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|282163034|ref|YP_003355419.1| - 2.6e-11 43.4 0.1 5.8e-11 42.3 0.1 1.6 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|282163034|ref|YP_003355419.1| - 2.5e-10 40.5 0.0 4.7e-10 39.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|282163034|ref|YP_003355419.1| - 1.1e-06 28.8 0.7 1.6e-06 28.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|282163034|ref|YP_003355419.1| - 5.8e-05 22.4 0.8 0.00025 20.3 0.4 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|282163034|ref|YP_003355419.1| - 0.0022 17.3 0.2 0.052 12.8 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ AAA_24 PF13479.6 gi|282163034|ref|YP_003355419.1| - 0.0051 16.6 0.1 0.0072 16.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|282163034|ref|YP_003355419.1| - 0.014 14.4 1.1 0.027 13.5 1.0 1.6 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_26 PF13500.6 gi|282163034|ref|YP_003355419.1| - 0.02 14.7 0.3 0.14 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|282163034|ref|YP_003355419.1| - 0.048 14.1 0.0 0.088 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain GATase_3 PF07685.14 gi|282163035|ref|YP_003355420.1| - 1.2e-42 145.8 0.1 1.9e-42 145.1 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|282163035|ref|YP_003355420.1| - 9.2e-19 67.8 0.1 1.6e-18 67.0 0.1 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|282163035|ref|YP_003355420.1| - 2e-18 66.9 0.5 2.5e-13 50.3 0.0 2.3 1 1 0 2 2 2 2 AAA domain SNO PF01174.19 gi|282163035|ref|YP_003355420.1| - 0.0049 16.7 0.0 0.0098 15.8 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family SF-assemblin PF06705.11 gi|282163036|ref|YP_003355421.1| - 1.7e-05 24.3 19.9 1.7e-05 24.3 19.9 9.6 1 1 8 10 10 8 1 SF-assemblin/beta giardin Apolipoprotein PF01442.18 gi|282163036|ref|YP_003355421.1| - 3.5e-05 23.8 13.2 3.5e-05 23.8 13.2 10.0 1 1 8 9 9 6 4 Apolipoprotein A1/A4/E domain Filament PF00038.21 gi|282163036|ref|YP_003355421.1| - 0.0013 18.3 20.8 0.0013 18.3 20.8 7.7 1 1 2 6 6 4 2 Intermediate filament protein Fez1 PF06818.15 gi|282163036|ref|YP_003355421.1| - 0.0031 18.0 3.6 0.0031 18.0 3.6 10.2 3 1 4 8 8 5 2 Fez1 DUF1664 PF07889.12 gi|282163036|ref|YP_003355421.1| - 0.01 15.9 0.2 0.01 15.9 0.2 14.7 6 2 10 16 16 16 0 Protein of unknown function (DUF1664) TPR_MLP1_2 PF07926.12 gi|282163036|ref|YP_003355421.1| - 0.011 15.8 0.5 0.011 15.8 0.5 13.3 7 3 7 15 15 12 0 TPR/MLP1/MLP2-like protein ANAPC5 PF12862.7 gi|282163036|ref|YP_003355421.1| - 0.016 15.2 0.1 0.13 12.3 0.1 2.6 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 Mating_N PF12731.7 gi|282163036|ref|YP_003355421.1| - 0.023 14.8 24.5 9.8 6.3 0.0 8.6 5 1 2 7 7 6 0 Mating-type protein beta 1 TMPIT PF07851.13 gi|282163036|ref|YP_003355421.1| - 0.028 13.7 0.2 0.028 13.7 0.2 11.6 4 2 6 12 12 10 0 TMPIT-like protein DUF1655 PF07868.11 gi|282163036|ref|YP_003355421.1| - 0.028 14.5 0.2 0.14 12.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1655) BRE1 PF08647.11 gi|282163036|ref|YP_003355421.1| - 0.029 14.4 0.6 0.029 14.4 0.6 13.1 5 2 8 14 14 12 0 BRE1 E3 ubiquitin ligase DUF16 PF01519.16 gi|282163036|ref|YP_003355421.1| - 0.03 14.8 0.1 0.03 14.8 0.1 14.2 4 3 8 12 12 11 0 Protein of unknown function DUF16 APG6_N PF17675.1 gi|282163036|ref|YP_003355421.1| - 0.042 14.4 0.6 0.042 14.4 0.6 12.6 3 2 6 10 10 7 0 Apg6 coiled-coil region Halo_GVPC PF05465.13 gi|282163036|ref|YP_003355421.1| - 2.5 8.4 6.8 15 5.9 0.0 5.3 4 0 0 4 4 4 0 Halobacterial gas vesicle protein C (GVPC) repeat DUF2316 PF10078.9 gi|282163036|ref|YP_003355421.1| - 6.1 7.2 17.3 1.1 9.5 0.1 5.7 3 1 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2316) DUF3450 PF11932.8 gi|282163037|ref|YP_003355422.1| - 0.00085 18.7 4.0 0.00085 18.7 4.0 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) Baculo_PEP_C PF04513.12 gi|282163037|ref|YP_003355422.1| - 0.021 14.8 1.3 0.17 11.9 0.2 2.1 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 gi|282163037|ref|YP_003355422.1| - 0.049 13.9 12.1 0.36 11.2 0.9 3.1 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ISG65-75 PF11727.8 gi|282163037|ref|YP_003355422.1| - 0.069 12.4 11.8 0.12 11.6 2.8 2.2 1 1 1 2 2 2 0 Invariant surface glycoprotein Bromo_TP_like PF17027.5 gi|282163037|ref|YP_003355422.1| - 0.28 11.4 3.6 0.39 10.9 0.2 2.4 1 1 1 2 2 2 0 Histone-fold protein Spectrin PF00435.21 gi|282163037|ref|YP_003355422.1| - 0.36 11.3 10.9 0.067 13.7 5.4 2.3 2 2 0 2 2 2 0 Spectrin repeat Med9 PF07544.13 gi|282163037|ref|YP_003355422.1| - 0.4 10.8 10.2 0.48 10.6 3.2 3.1 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Ax_dynein_light PF10211.9 gi|282163037|ref|YP_003355422.1| - 0.44 10.5 9.7 0.046 13.7 3.6 2.0 1 1 1 2 2 2 0 Axonemal dynein light chain ApoLp-III PF07464.11 gi|282163037|ref|YP_003355422.1| - 0.55 10.3 9.5 0.25 11.4 3.5 2.3 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Exonuc_VII_L PF02601.15 gi|282163037|ref|YP_003355422.1| - 0.67 9.5 9.2 1.7 8.1 9.1 1.7 1 1 0 1 1 1 0 Exonuclease VII, large subunit NPV_P10 PF05531.12 gi|282163037|ref|YP_003355422.1| - 2 8.9 6.2 9.7 6.7 0.6 2.9 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Fib_alpha PF08702.10 gi|282163037|ref|YP_003355422.1| - 2.3 8.4 9.2 2 8.6 1.2 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF16 PF01519.16 gi|282163037|ref|YP_003355422.1| - 2.5 8.6 7.9 88 3.7 7.9 2.6 1 1 0 1 1 1 0 Protein of unknown function DUF16 TMPIT PF07851.13 gi|282163037|ref|YP_003355422.1| - 8.1 5.6 11.3 5.7 6.1 3.0 2.0 1 1 1 2 2 2 0 TMPIT-like protein DUF2203 PF09969.9 gi|282163037|ref|YP_003355422.1| - 8.4 7.1 10.0 3.8 8.3 4.1 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Ribosomal_L16 PF00252.18 gi|282163038|ref|YP_003355423.1| - 1.2e-35 122.4 0.0 1.4e-35 122.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e PYNP_C PF07831.13 gi|282163038|ref|YP_003355423.1| - 0.029 14.0 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 Pyrimidine nucleoside phosphorylase C-terminal domain THUMP PF02926.17 gi|282163038|ref|YP_003355423.1| - 0.12 12.5 0.0 0.73 9.9 0.0 1.9 1 1 1 2 2 2 0 THUMP domain Fasciclin PF02469.22 gi|282163039|ref|YP_003355424.1| - 3.2e-32 111.4 0.0 4.2e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain DUF726 PF05277.12 gi|282163039|ref|YP_003355424.1| - 0.19 10.6 0.3 0.28 10.1 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF726) Gram_pos_anchor PF00746.21 gi|282163039|ref|YP_003355424.1| - 3 7.9 6.1 2.4 8.2 0.2 2.5 2 0 0 2 2 2 0 LPXTG cell wall anchor motif eIF-5_eIF-2B PF01873.17 gi|282163040|ref|YP_003355425.1| - 4.1e-36 123.4 0.0 7.5e-36 122.6 0.0 1.4 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|282163040|ref|YP_003355425.1| - 2e-11 43.7 1.1 4.5e-11 42.6 1.1 1.6 1 0 0 1 1 1 1 TRAM domain Lar_restr_allev PF14354.6 gi|282163040|ref|YP_003355425.1| - 0.047 14.1 1.6 0.3 11.5 1.5 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar ZF-HD_dimer PF04770.12 gi|282163040|ref|YP_003355425.1| - 0.05 13.9 0.3 0.93 9.9 0.0 2.4 2 0 0 2 2 2 0 ZF-HD protein dimerisation region Zn-ribbon_8 PF09723.10 gi|282163040|ref|YP_003355425.1| - 0.067 13.3 0.6 0.13 12.3 0.6 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-IS66 PF13005.7 gi|282163040|ref|YP_003355425.1| - 0.23 11.9 1.6 24 5.4 0.2 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DNA_RNApol_7kD PF03604.13 gi|282163040|ref|YP_003355425.1| - 1.3 8.7 4.5 4.6 7.0 4.6 1.8 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TatD_DNase PF01026.21 gi|282163041|ref|YP_003355426.1| - 2.2e-21 76.4 0.0 2.8e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|282163041|ref|YP_003355426.1| - 0.0014 18.0 0.1 1 8.6 0.0 3.0 2 1 0 2 2 2 2 Amidohydrolase family RasGEF PF00617.19 gi|282163042|ref|YP_003355427.1| - 0.18 12.0 0.0 0.39 10.9 0.0 1.6 1 0 0 1 1 1 0 RasGEF domain HycI PF01750.18 gi|282163044|ref|YP_003355429.1| - 2.8e-27 95.1 0.8 3.7e-27 94.7 0.8 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease AA_kinase PF00696.28 gi|282163045|ref|YP_003355430.1| - 2.8e-31 109.0 1.9 5.4e-31 108.0 1.9 1.4 1 1 0 1 1 1 1 Amino acid kinase family Rhomboid PF01694.22 gi|282163047|ref|YP_003355432.1| - 4.9e-35 120.7 16.1 4.9e-35 120.7 16.1 1.4 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|282163047|ref|YP_003355432.1| - 1.6e-12 47.3 5.6 2.5e-12 46.7 5.6 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|282163047|ref|YP_003355432.1| - 0.00072 20.1 0.1 0.00072 20.1 0.1 2.4 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) zf-C2H2_4 PF13894.6 gi|282163047|ref|YP_003355432.1| - 4.4 8.4 6.1 1.4 10.0 1.9 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger HTH_11 PF08279.12 gi|282163048|ref|YP_003355433.1| - 1.7e-16 59.9 0.0 4.3e-16 58.6 0.0 1.7 1 0 0 1 1 1 1 HTH domain BPL_LplA_LipB PF03099.19 gi|282163048|ref|YP_003355433.1| - 1.8e-15 57.0 0.1 3.3e-15 56.2 0.1 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|282163048|ref|YP_003355433.1| - 1.2e-11 44.3 0.4 2.4e-11 43.3 0.4 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.6 gi|282163048|ref|YP_003355433.1| - 5.5e-06 25.8 0.0 1.5e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding BPL_LplA_LipB_2 PF16917.5 gi|282163048|ref|YP_003355433.1| - 1.2e-05 24.9 0.5 3.9e-05 23.3 0.5 1.8 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family MarR PF01047.22 gi|282163048|ref|YP_003355433.1| - 0.0013 18.6 0.1 0.0039 17.1 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|282163048|ref|YP_003355433.1| - 0.0013 18.6 0.0 0.004 17.0 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|282163048|ref|YP_003355433.1| - 0.0032 17.2 0.0 0.008 16.0 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|282163048|ref|YP_003355433.1| - 0.0038 17.5 0.0 0.0092 16.3 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|282163048|ref|YP_003355433.1| - 0.0049 17.0 0.0 0.015 15.5 0.0 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|282163048|ref|YP_003355433.1| - 0.017 14.8 0.0 0.038 13.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_22 PF13309.6 gi|282163048|ref|YP_003355433.1| - 0.057 13.5 0.0 0.19 11.8 0.0 2.0 2 0 0 2 2 2 0 HTH domain HTH_AsnC-type PF13404.6 gi|282163048|ref|YP_003355433.1| - 0.058 13.2 0.0 0.2 11.5 0.0 2.0 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_10 PF04967.12 gi|282163048|ref|YP_003355433.1| - 0.075 12.9 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain YdaS_antitoxin PF15943.5 gi|282163048|ref|YP_003355433.1| - 0.084 12.8 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MarR_2 PF12802.7 gi|282163048|ref|YP_003355433.1| - 0.1 12.5 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 MarR family BioY PF02632.14 gi|282163049|ref|YP_003355434.1| - 4e-41 140.2 23.6 4e-41 140.2 23.6 1.4 2 0 0 2 2 2 1 BioY family ECF_trnsprt PF12822.7 gi|282163049|ref|YP_003355434.1| - 9.2e-05 22.6 28.7 0.00016 21.9 28.7 1.4 1 1 0 1 1 1 1 ECF transporter, substrate-specific component CbtB PF09489.10 gi|282163049|ref|YP_003355434.1| - 0.35 11.0 0.3 0.35 11.0 0.3 3.8 5 1 0 5 5 5 0 Probable cobalt transporter subunit (CbtB) ABC_tran PF00005.27 gi|282163050|ref|YP_003355435.1| - 5.4e-27 95.0 0.0 8.1e-27 94.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|282163050|ref|YP_003355435.1| - 8.9e-08 31.8 0.0 1.2e-06 28.1 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|282163050|ref|YP_003355435.1| - 6.4e-06 26.2 0.0 0.012 15.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|282163050|ref|YP_003355435.1| - 0.00045 19.9 0.0 0.00094 18.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|282163050|ref|YP_003355435.1| - 0.00075 19.3 0.0 0.00095 19.0 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|282163050|ref|YP_003355435.1| - 0.024 14.0 0.0 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|282163050|ref|YP_003355435.1| - 0.078 13.5 0.0 0.094 13.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|282163050|ref|YP_003355435.1| - 0.085 12.4 0.0 0.15 11.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|282163051|ref|YP_003355436.1| - 8.3e-20 71.7 0.0 1.8e-19 70.6 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163051|ref|YP_003355436.1| - 1.6e-13 51.1 0.1 2.2e-08 34.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282163051|ref|YP_003355436.1| - 1.2e-06 28.1 0.2 0.00043 19.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|282163051|ref|YP_003355436.1| - 1.9e-05 25.1 0.1 2.8e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|282163051|ref|YP_003355436.1| - 2.6e-05 23.8 0.4 8.4e-05 22.2 0.4 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|282163051|ref|YP_003355436.1| - 0.0028 16.9 0.0 0.0048 16.2 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin Mg_chelatase PF01078.21 gi|282163051|ref|YP_003355436.1| - 0.0065 15.9 0.1 0.013 14.9 0.1 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|282163051|ref|YP_003355436.1| - 0.035 13.7 2.3 0.037 13.6 0.5 1.8 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|282163051|ref|YP_003355436.1| - 0.048 13.7 0.0 0.12 12.4 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_23 PF13476.6 gi|282163051|ref|YP_003355436.1| - 0.098 13.2 0.4 0.14 12.7 0.4 1.1 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|282163051|ref|YP_003355436.1| - 0.12 12.5 0.0 0.28 11.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|282163051|ref|YP_003355436.1| - 0.13 11.6 0.2 0.24 10.7 0.2 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_15 PF13175.6 gi|282163051|ref|YP_003355436.1| - 0.35 10.5 0.0 7 6.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain CbiQ PF02361.16 gi|282163052|ref|YP_003355437.1| - 6e-19 68.5 25.7 2.8e-18 66.3 25.7 1.8 1 1 0 1 1 1 1 Cobalt transport protein MtrG PF04210.13 gi|282163052|ref|YP_003355437.1| - 0.066 13.1 0.1 11 6.0 0.0 2.3 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Thioredox_DsbH PF03190.15 gi|282163053|ref|YP_003355438.1| - 1.1e-67 227.1 0.1 2.4e-67 226.0 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|282163053|ref|YP_003355438.1| - 1.4e-12 47.6 0.0 3.3e-12 46.4 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_88 PF07470.13 gi|282163053|ref|YP_003355438.1| - 2.2e-05 23.7 0.1 0.0018 17.4 0.1 2.6 2 0 0 2 2 2 1 Glycosyl Hydrolase Family 88 GlcNAc_2-epim PF07221.11 gi|282163053|ref|YP_003355438.1| - 0.00021 20.7 0.0 0.00083 18.7 0.0 1.9 2 0 0 2 2 2 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_127 PF07944.12 gi|282163053|ref|YP_003355438.1| - 0.00036 19.2 0.3 0.58 8.6 0.0 2.7 2 1 1 3 3 3 2 Beta-L-arabinofuranosidase, GH127 C5-epim_C PF06662.13 gi|282163053|ref|YP_003355438.1| - 0.0018 17.8 0.7 0.23 10.9 0.0 3.1 3 1 0 3 3 3 1 D-glucuronyl C5-epimerase C-terminus Thioredoxin_2 PF13098.6 gi|282163053|ref|YP_003355438.1| - 0.011 16.2 0.0 0.029 14.8 0.0 1.8 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin PF00085.20 gi|282163053|ref|YP_003355438.1| - 0.017 15.1 1.3 0.052 13.6 0.3 2.2 3 0 0 3 3 3 0 Thioredoxin Metal_resist PF13801.6 gi|282163053|ref|YP_003355438.1| - 0.18 12.0 0.7 0.46 10.7 0.7 1.7 1 0 0 1 1 1 0 Heavy-metal resistance E1-E2_ATPase PF00122.20 gi|282163054|ref|YP_003355439.1| - 3e-60 202.8 0.5 3e-60 202.8 0.5 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|282163054|ref|YP_003355439.1| - 2e-48 165.5 6.3 4.2e-48 164.4 6.3 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|282163054|ref|YP_003355439.1| - 1.6e-34 118.1 3.2 2.4e-16 59.9 0.5 2.6 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|282163054|ref|YP_003355439.1| - 1.9e-07 31.1 1.5 5.6e-05 23.0 0.3 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|282163054|ref|YP_003355439.1| - 4.2e-05 24.0 0.1 0.0002 21.8 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|282163054|ref|YP_003355439.1| - 0.007 16.5 0.1 0.037 14.1 0.1 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase PCP_red PF08369.10 gi|282163054|ref|YP_003355439.1| - 0.033 14.4 0.2 0.23 11.7 0.1 2.5 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Hydrolase_6 PF13344.6 gi|282163054|ref|YP_003355439.1| - 0.037 14.1 0.0 0.79 9.9 0.0 2.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase CT_C_D PF02682.16 gi|282163054|ref|YP_003355439.1| - 0.049 13.4 1.8 2.5 7.8 0.1 3.3 2 1 1 3 3 3 0 Carboxyltransferase domain, subdomain C and D Fer2_BFD PF04324.15 gi|282163054|ref|YP_003355439.1| - 0.054 13.9 0.3 20 5.7 0.1 3.3 2 0 0 2 2 2 0 BFD-like [2Fe-2S] binding domain DUF2997 PF11211.8 gi|282163054|ref|YP_003355439.1| - 0.13 12.0 0.6 1.6 8.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2997) Rieske PF00355.26 gi|282163055|ref|YP_003355440.1| - 1.2e-15 57.2 0.0 1.4e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|282163055|ref|YP_003355440.1| - 4.8e-10 39.3 0.0 5.4e-10 39.1 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain SMODS PF18144.1 gi|282163056|ref|YP_003355441.1| - 0.12 12.5 0.0 0.22 11.7 0.0 1.4 1 1 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Yip1 PF04893.17 gi|282163057|ref|YP_003355442.1| - 2.4e-20 72.9 11.0 3.2e-20 72.5 11.0 1.1 1 0 0 1 1 1 1 Yip1 domain DHNA PF04038.12 gi|282163058|ref|YP_003355443.1| - 6e-41 139.3 0.0 6.8e-41 139.2 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase HTH_42 PF06224.12 gi|282163059|ref|YP_003355444.1| - 1.2e-45 156.5 0.0 1.5e-45 156.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|282163059|ref|YP_003355444.1| - 0.00016 21.5 0.0 0.21 11.5 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|282163059|ref|YP_003355444.1| - 0.028 14.9 0.0 1.8 9.1 0.0 2.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_3 PF01381.22 gi|282163060|ref|YP_003355445.1| - 7.7e-13 48.3 0.0 8.9e-13 48.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|282163060|ref|YP_003355445.1| - 8.5e-09 35.3 0.0 1e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|282163060|ref|YP_003355445.1| - 1.6e-06 28.4 0.0 2e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|282163060|ref|YP_003355445.1| - 0.00044 20.2 0.0 0.00074 19.5 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_25 PF13413.6 gi|282163060|ref|YP_003355445.1| - 0.013 15.4 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|282163060|ref|YP_003355445.1| - 0.025 15.0 0.0 0.029 14.8 0.0 1.1 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 gi|282163060|ref|YP_003355445.1| - 0.051 13.5 0.0 0.062 13.3 0.0 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain Crp PF00325.20 gi|282163060|ref|YP_003355445.1| - 0.13 11.9 0.0 0.28 10.9 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family LBP_M PF17385.2 gi|282163060|ref|YP_003355445.1| - 0.15 11.6 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Lacto-N-biose phosphorylase central domain MqsA_antitoxin PF15731.5 gi|282163060|ref|YP_003355445.1| - 0.15 12.1 0.0 0.18 11.9 0.0 1.1 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA UbiA PF01040.18 gi|282163061|ref|YP_003355446.1| - 0.035 13.4 8.6 0.046 13.0 8.6 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family MARVEL PF01284.23 gi|282163061|ref|YP_003355446.1| - 0.48 10.5 15.6 10 6.1 16.1 2.0 1 1 0 1 1 1 0 Membrane-associating domain DUF423 PF04241.15 gi|282163061|ref|YP_003355446.1| - 0.79 10.0 8.3 2.4 8.4 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF423) EamA PF00892.20 gi|282163061|ref|YP_003355446.1| - 1.3 9.1 17.1 0.2 11.8 2.6 2.0 1 1 1 2 2 2 0 EamA-like transporter family FA_desaturase PF00487.24 gi|282163061|ref|YP_003355446.1| - 1.4 8.7 3.5 1.7 8.5 3.5 1.2 1 0 0 1 1 1 0 Fatty acid desaturase MASE3 PF17159.4 gi|282163062|ref|YP_003355447.1| - 0.002 17.8 4.1 0.002 17.8 4.1 1.5 1 1 0 1 1 1 1 Membrane-associated sensor domain Amastin PF07344.11 gi|282163062|ref|YP_003355447.1| - 0.015 15.1 2.4 0.015 15.1 2.4 2.0 1 1 1 2 2 2 0 Amastin surface glycoprotein Vps55 PF04133.14 gi|282163062|ref|YP_003355447.1| - 0.049 13.6 7.1 0.15 12.0 7.1 1.7 1 1 0 1 1 1 0 Vacuolar protein sorting 55 TRAP_beta PF05753.14 gi|282163062|ref|YP_003355447.1| - 0.067 12.6 0.1 0.13 11.7 0.1 1.5 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) 7tm_3 PF00003.22 gi|282163062|ref|YP_003355447.1| - 0.19 11.4 12.8 0.31 10.7 12.8 1.4 1 1 0 1 1 1 0 7 transmembrane sweet-taste receptor of 3 GCPR DUF4131 PF13567.6 gi|282163062|ref|YP_003355447.1| - 0.29 10.8 8.9 1.2 8.8 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF1430 PF07242.11 gi|282163062|ref|YP_003355447.1| - 2.7 8.3 10.8 0.2 11.9 0.7 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1430) DUF2178 PF09946.9 gi|282163063|ref|YP_003355448.1| - 0.00016 21.8 3.2 0.00025 21.2 3.2 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF3796 PF12676.7 gi|282163063|ref|YP_003355448.1| - 0.0016 18.9 7.0 0.0021 18.5 7.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3796) ABC2_membrane_3 PF12698.7 gi|282163063|ref|YP_003355448.1| - 0.0046 16.1 11.2 0.0061 15.7 11.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein EMP70 PF02990.16 gi|282163063|ref|YP_003355448.1| - 1.1 7.9 10.0 1.3 7.6 10.0 1.0 1 0 0 1 1 1 0 Endomembrane protein 70 Polysacc_synt_C PF14667.6 gi|282163063|ref|YP_003355448.1| - 1.2 9.2 16.2 0.14 12.2 6.0 2.1 2 0 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain DUF2178 PF09946.9 gi|282163064|ref|YP_003355449.1| - 0.014 15.5 4.9 0.027 14.7 4.9 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2178) DUF2975 PF11188.8 gi|282163064|ref|YP_003355449.1| - 0.12 12.3 9.4 0.94 9.4 9.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) DUF4149 PF13664.6 gi|282163064|ref|YP_003355449.1| - 3 8.2 9.9 50 4.3 9.9 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) 2-Hacid_dh_C PF02826.19 gi|282163065|ref|YP_003355450.1| - 1e-62 210.6 0.0 2.2e-62 209.6 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|282163065|ref|YP_003355450.1| - 4e-41 139.8 0.6 1.5e-40 137.9 0.1 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|282163065|ref|YP_003355450.1| - 1.2e-10 41.0 0.4 1.8e-09 37.2 0.1 3.0 3 0 0 3 3 3 1 ACT domain F420_oxidored PF03807.17 gi|282163065|ref|YP_003355450.1| - 0.0034 17.9 0.0 0.31 11.7 0.0 3.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|282163065|ref|YP_003355450.1| - 0.015 14.8 0.0 0.052 13.1 0.0 2.0 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|282163065|ref|YP_003355450.1| - 0.025 14.7 0.0 0.069 13.3 0.0 1.7 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase tRNA-Thr_ED PF08915.11 gi|282163066|ref|YP_003355451.1| - 1.2e-50 171.1 0.0 2.2e-50 170.3 0.0 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|282163066|ref|YP_003355451.1| - 3.4e-16 59.2 0.2 7.7e-16 58.0 0.2 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|282163066|ref|YP_003355451.1| - 5.7e-16 59.0 0.2 9.8e-16 58.2 0.2 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HTH_3 PF01381.22 gi|282163067|ref|YP_003355452.1| - 3.3e-07 30.3 0.0 1.2e-06 28.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix Sigma70_r4 PF04545.16 gi|282163067|ref|YP_003355452.1| - 9.7e-06 25.0 1.1 0.0099 15.4 1.2 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 MqsA_antitoxin PF15731.5 gi|282163067|ref|YP_003355452.1| - 0.00025 21.1 0.0 0.00038 20.6 0.0 1.3 1 1 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_31 PF13560.6 gi|282163067|ref|YP_003355452.1| - 0.00081 19.7 0.0 0.0013 19.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|282163067|ref|YP_003355452.1| - 0.0014 18.6 0.1 0.0023 17.8 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_19 PF12844.7 gi|282163067|ref|YP_003355452.1| - 0.0014 18.6 0.2 0.0029 17.6 0.2 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|282163067|ref|YP_003355452.1| - 0.0016 18.3 0.0 0.63 10.0 0.1 2.3 2 0 0 2 2 2 2 MarR family HTH_25 PF13413.6 gi|282163067|ref|YP_003355452.1| - 0.017 14.9 0.1 0.032 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|282163067|ref|YP_003355452.1| - 0.063 13.7 0.0 0.091 13.2 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain PPDK_N PF01326.19 gi|282163068|ref|YP_003355453.1| - 1.7e-111 372.6 0.5 2.8e-111 372.0 0.5 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|282163068|ref|YP_003355453.1| - 1.6e-84 283.5 0.3 2.8e-84 282.7 0.3 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|282163068|ref|YP_003355453.1| - 1.2e-26 92.2 1.0 1.2e-26 92.2 1.0 1.9 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain DRTGG PF07085.12 gi|282163068|ref|YP_003355453.1| - 0.062 13.1 0.7 1.8 8.4 0.0 3.2 3 1 1 4 4 4 0 DRTGG domain Pyridoxal_deC PF00282.19 gi|282163069|ref|YP_003355454.1| - 2.3e-35 122.0 0.0 3.6e-35 121.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|282163069|ref|YP_003355454.1| - 5.1e-10 38.8 0.0 8.1e-10 38.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|282163069|ref|YP_003355454.1| - 1.1e-08 34.6 0.0 4.2e-07 29.5 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|282163069|ref|YP_003355454.1| - 0.0049 16.2 0.0 0.0069 15.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pribosyltran PF00156.27 gi|282163070|ref|YP_003355455.1| - 4.6e-21 75.0 1.1 5.9e-21 74.6 1.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|282163070|ref|YP_003355455.1| - 2.5e-05 23.8 0.0 4.2e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|282163070|ref|YP_003355455.1| - 0.0029 17.1 0.1 0.0039 16.7 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Desmo_N PF06771.11 gi|282163070|ref|YP_003355455.1| - 0.15 12.5 0.0 0.33 11.3 0.0 1.6 1 0 0 1 1 1 0 Viral Desmoplakin N-terminus NMT1_2 PF13379.6 gi|282163071|ref|YP_003355456.1| - 6.9e-18 65.3 0.0 9.2e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|282163071|ref|YP_003355456.1| - 1.1e-08 35.3 0.0 1.6e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like DUF3834 PF12916.7 gi|282163071|ref|YP_003355456.1| - 0.00023 20.5 0.0 0.025 13.8 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3834) SBP_bac_3 PF00497.20 gi|282163071|ref|YP_003355456.1| - 0.18 11.2 0.0 1.1 8.7 0.0 1.9 1 1 1 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 DUF2099 PF09872.9 gi|282163072|ref|YP_003355457.1| - 1.6e-109 365.0 5.9 1.8e-109 364.9 5.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Peptidase_S8 PF00082.22 gi|282163073|ref|YP_003355458.1| - 2.5e-66 224.0 8.9 3.3e-66 223.6 8.9 1.2 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.16 gi|282163073|ref|YP_003355458.1| - 0.0002 22.0 0.1 0.00039 21.0 0.1 1.5 1 0 0 1 1 1 1 Peptidase inhibitor I9 YHS PF04945.13 gi|282163074|ref|YP_003355459.1| - 4.6e-14 52.2 2.8 5.1e-14 52.1 2.8 1.0 1 0 0 1 1 1 1 YHS domain DUF2116 PF09889.9 gi|282163074|ref|YP_003355459.1| - 0.004 17.1 0.5 0.004 17.1 0.5 1.4 2 0 0 2 2 2 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) Arc_trans_TRASH PF08394.10 gi|282163074|ref|YP_003355459.1| - 0.0069 16.7 1.0 0.011 16.0 1.0 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_3 PF01381.22 gi|282163075|ref|YP_003355460.1| - 4e-08 33.2 0.2 5.8e-08 32.7 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|282163075|ref|YP_003355460.1| - 1.1e-05 24.9 0.0 2.7e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|282163075|ref|YP_003355460.1| - 8.6e-05 22.2 0.0 0.00018 21.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain YdaS_antitoxin PF15943.5 gi|282163075|ref|YP_003355460.1| - 0.0003 20.6 0.1 0.00057 19.7 0.1 1.5 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 gi|282163075|ref|YP_003355460.1| - 0.00034 20.6 0.1 0.00048 20.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|282163075|ref|YP_003355460.1| - 0.00041 19.8 0.1 0.00078 18.9 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.6 gi|282163075|ref|YP_003355460.1| - 0.00078 19.3 0.1 0.0011 18.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|282163075|ref|YP_003355460.1| - 0.0012 19.1 0.0 0.0021 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|282163075|ref|YP_003355460.1| - 0.0017 18.2 0.0 0.0033 17.3 0.0 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.12 gi|282163075|ref|YP_003355460.1| - 0.0031 17.2 0.5 0.0052 16.4 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|282163075|ref|YP_003355460.1| - 0.005 16.8 0.0 0.0083 16.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|282163075|ref|YP_003355460.1| - 0.0073 16.2 0.2 0.021 14.8 0.1 1.9 1 1 1 2 2 2 1 HTH domain HTH_1 PF00126.27 gi|282163075|ref|YP_003355460.1| - 0.0096 15.9 0.3 0.043 13.8 0.1 2.2 2 1 0 2 2 1 1 Bacterial regulatory helix-turn-helix protein, lysR family P22_Cro PF14549.6 gi|282163075|ref|YP_003355460.1| - 0.0096 15.7 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 DNA-binding transcriptional regulator Cro HTH_28 PF13518.6 gi|282163075|ref|YP_003355460.1| - 0.011 15.8 0.5 0.018 15.2 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain HNF-1_N PF04814.13 gi|282163075|ref|YP_003355460.1| - 0.027 15.1 0.0 0.034 14.8 0.0 1.2 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus HTH_26 PF13443.6 gi|282163075|ref|YP_003355460.1| - 0.037 14.4 0.0 0.066 13.7 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 gi|282163075|ref|YP_003355460.1| - 0.038 14.2 0.1 0.061 13.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|282163075|ref|YP_003355460.1| - 0.045 14.2 0.0 0.054 14.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain KORA PF16509.5 gi|282163075|ref|YP_003355460.1| - 0.049 13.9 0.1 0.1 12.9 0.1 1.5 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor Cro PF09048.10 gi|282163075|ref|YP_003355460.1| - 0.074 13.1 0.4 0.16 12.0 0.3 1.7 1 1 1 2 2 2 0 Cro Fe_dep_repress PF01325.19 gi|282163075|ref|YP_003355460.1| - 0.1 12.8 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Pou PF00157.17 gi|282163075|ref|YP_003355460.1| - 0.12 12.4 0.1 0.39 10.7 0.1 1.8 1 1 1 2 2 2 0 Pou domain - N-terminal to homeobox domain HTH_10 PF04967.12 gi|282163075|ref|YP_003355460.1| - 0.12 12.2 0.3 0.26 11.1 0.0 1.7 2 0 0 2 2 2 0 HTH DNA binding domain HTH_5 PF01022.20 gi|282163075|ref|YP_003355460.1| - 0.12 12.2 0.6 0.41 10.6 0.0 2.1 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family tRNA-Thr_ED PF08915.11 gi|282163077|ref|YP_003355462.1| - 6.2e-47 159.1 0.0 7.2e-47 158.9 0.0 1.0 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase Aminotran_5 PF00266.19 gi|282163078|ref|YP_003355463.1| - 3.7e-85 286.1 1.0 4.4e-85 285.9 1.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|282163078|ref|YP_003355463.1| - 3e-10 40.0 1.1 4.4e-10 39.4 1.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|282163078|ref|YP_003355463.1| - 2.7e-08 33.5 0.3 3.4e-08 33.1 0.3 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|282163078|ref|YP_003355463.1| - 3.3e-05 22.6 0.2 4.7e-05 22.1 0.2 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.19 gi|282163078|ref|YP_003355463.1| - 0.081 11.6 0.1 0.15 10.8 0.1 1.4 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain DUF1296 PF06972.11 gi|282163078|ref|YP_003355463.1| - 0.13 12.4 0.1 8.3 6.6 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1296) NifU_N PF01592.16 gi|282163079|ref|YP_003355464.1| - 6.7e-47 158.8 0.1 8e-47 158.6 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain DUF1858 PF08984.11 gi|282163079|ref|YP_003355464.1| - 0.0065 16.6 0.4 0.06 13.5 0.4 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF1858) TSCPD PF12637.7 gi|282163079|ref|YP_003355464.1| - 0.022 15.0 0.3 0.043 14.0 0.3 1.6 1 1 0 1 1 1 0 TSCPD domain UPF0051 PF01458.17 gi|282163080|ref|YP_003355465.1| - 2.3e-52 177.9 0.0 3.1e-52 177.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0181 PF03701.14 gi|282163080|ref|YP_003355465.1| - 0.072 12.7 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) ABC_tran PF00005.27 gi|282163081|ref|YP_003355466.1| - 8.7e-24 84.6 0.0 1.3e-23 84.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|282163081|ref|YP_003355466.1| - 1.1e-05 25.0 0.6 0.051 13.0 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|282163081|ref|YP_003355466.1| - 1.4e-05 25.0 3.4 0.031 14.1 0.5 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|282163081|ref|YP_003355466.1| - 0.0042 16.8 0.0 0.0086 15.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|282163081|ref|YP_003355466.1| - 0.0093 15.9 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|282163081|ref|YP_003355466.1| - 0.027 14.1 0.1 0.052 13.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|282163081|ref|YP_003355466.1| - 0.067 13.7 0.8 0.13 12.7 0.8 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|282163081|ref|YP_003355466.1| - 0.1 12.7 0.1 0.15 12.2 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Aminotran_3 PF00202.21 gi|282163082|ref|YP_003355467.1| - 1.1e-128 429.4 0.4 1.4e-128 429.1 0.4 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|282163082|ref|YP_003355467.1| - 2.4e-07 30.3 0.0 1.5e-06 27.6 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|282163082|ref|YP_003355467.1| - 0.0006 18.9 0.0 0.0087 15.1 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|282163082|ref|YP_003355467.1| - 0.0024 17.2 0.1 0.0058 16.0 0.0 1.6 2 0 0 2 2 2 1 Beta-eliminating lyase GMP_synt_C PF00958.22 gi|282163083|ref|YP_003355468.1| - 8.8e-32 109.0 0.0 1.7e-31 108.1 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|282163083|ref|YP_003355468.1| - 2.4e-09 36.7 0.0 0.00043 19.5 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|282163083|ref|YP_003355468.1| - 4.2e-05 22.5 0.0 0.017 13.9 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|282163083|ref|YP_003355468.1| - 0.0012 18.4 0.0 0.012 15.1 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|282163083|ref|YP_003355468.1| - 0.011 15.3 0.1 0.073 12.6 0.0 2.4 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|282163083|ref|YP_003355468.1| - 0.016 14.9 0.1 0.023 14.4 0.1 1.2 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.19 gi|282163083|ref|YP_003355468.1| - 0.085 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|282163083|ref|YP_003355468.1| - 0.22 11.3 0.0 0.31 10.8 0.0 1.4 1 1 0 1 1 1 0 PP-loop family FMN_red PF03358.15 gi|282163084|ref|YP_003355469.1| - 8e-10 38.7 0.0 8.9e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|282163084|ref|YP_003355469.1| - 4.6e-06 26.4 0.2 0.00083 19.1 0.2 2.7 1 1 1 2 2 2 1 Flavodoxin domain Flavodoxin_4 PF12682.7 gi|282163084|ref|YP_003355469.1| - 4.9e-05 23.1 0.3 0.00064 19.5 0.3 2.0 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|282163084|ref|YP_003355469.1| - 6.9e-05 23.1 0.0 0.037 14.3 0.0 2.4 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_2 PF02525.17 gi|282163084|ref|YP_003355469.1| - 0.00016 21.4 0.1 0.00043 20.0 0.1 1.9 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.25 gi|282163084|ref|YP_003355469.1| - 0.0061 16.8 0.1 0.058 13.6 0.1 2.1 1 1 0 1 1 1 1 Flavodoxin DUF2626 PF11117.8 gi|282163085|ref|YP_003355470.1| - 0.0036 18.0 5.5 0.0073 17.0 5.5 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2626) DUF4412 PF14371.6 gi|282163086|ref|YP_003355471.1| - 0.14 12.0 5.3 6.4 6.5 0.1 3.1 1 1 1 3 3 3 0 Domain of unknown function (DUF4412) FMN_red PF03358.15 gi|282163087|ref|YP_003355472.1| - 2e-10 40.6 0.1 1.7e-07 31.1 0.0 2.2 1 1 1 2 2 2 2 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.7 gi|282163087|ref|YP_003355472.1| - 1.9e-07 31.4 0.0 2.6e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|282163087|ref|YP_003355472.1| - 9.4e-07 29.1 0.1 1.4e-06 28.6 0.1 1.6 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|282163087|ref|YP_003355472.1| - 0.00059 19.6 0.0 0.001 18.8 0.0 1.4 2 0 0 2 2 2 1 Flavodoxin domain Flavodoxin_2 PF02525.17 gi|282163087|ref|YP_003355472.1| - 0.0018 18.0 0.0 0.034 13.9 0.0 2.1 1 1 0 1 1 1 1 Flavodoxin-like fold AMP-binding PF00501.28 gi|282163089|ref|YP_003355474.1| - 5.6e-96 321.7 0.0 6.6e-96 321.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|282163089|ref|YP_003355474.1| - 1.2e-23 83.8 0.1 2.5e-23 82.8 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Methyltransf_25 PF13649.6 gi|282163090|ref|YP_003355475.1| - 7.5e-14 52.2 0.1 3e-13 50.3 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282163090|ref|YP_003355475.1| - 4.4e-10 39.5 0.0 6e-10 39.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282163090|ref|YP_003355475.1| - 2.9e-09 37.5 0.0 5.4e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163090|ref|YP_003355475.1| - 2e-08 34.2 0.0 3.3e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282163090|ref|YP_003355475.1| - 3.6e-07 30.9 0.0 6.1e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282163090|ref|YP_003355475.1| - 0.00023 20.6 0.0 0.00034 20.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|282163090|ref|YP_003355475.1| - 0.0012 18.4 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|282163090|ref|YP_003355475.1| - 0.055 13.5 0.0 0.089 12.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|282163090|ref|YP_003355475.1| - 0.091 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|282163090|ref|YP_003355475.1| - 0.12 11.4 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|282163090|ref|YP_003355475.1| - 0.16 11.3 0.0 0.24 10.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) ASCH PF04266.14 gi|282163091|ref|YP_003355476.1| - 1.6e-05 25.4 0.2 2.2e-05 25.0 0.2 1.2 1 0 0 1 1 1 1 ASCH domain DUF3850 PF12961.7 gi|282163091|ref|YP_003355476.1| - 0.0057 16.7 0.3 0.012 15.6 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3850) EVE PF01878.18 gi|282163092|ref|YP_003355477.1| - 4.7e-06 26.7 0.5 9.1e-06 25.7 0.1 1.7 2 0 0 2 2 2 1 EVE domain DUF4031 PF13223.6 gi|282163092|ref|YP_003355477.1| - 0.024 14.8 0.1 0.047 13.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4031) OGG_N PF07934.12 gi|282163092|ref|YP_003355477.1| - 0.056 13.5 0.1 0.15 12.2 0.1 1.7 1 0 0 1 1 1 0 8-oxoguanine DNA glycosylase, N-terminal domain HTH_27 PF13463.6 gi|282163093|ref|YP_003355478.1| - 1.4e-11 44.7 0.4 8.8e-11 42.1 0.1 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|282163093|ref|YP_003355478.1| - 2.5e-11 43.3 0.7 7.9e-11 41.7 0.1 2.0 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|282163093|ref|YP_003355478.1| - 1e-08 34.9 0.0 3.1e-08 33.4 0.0 1.8 2 0 0 2 2 1 1 MarR family TrmB PF01978.19 gi|282163093|ref|YP_003355478.1| - 1.3e-07 31.4 0.1 2.6e-07 30.4 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|282163093|ref|YP_003355478.1| - 2.6e-06 27.3 0.2 1.6e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|282163093|ref|YP_003355478.1| - 6.2e-05 22.5 0.2 0.00017 21.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_15 PF12324.8 gi|282163093|ref|YP_003355478.1| - 6.9e-05 22.7 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of alkylmercury lyase Fe_dep_repress PF01325.19 gi|282163093|ref|YP_003355478.1| - 8.6e-05 22.7 1.1 0.00029 21.0 0.2 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|282163093|ref|YP_003355478.1| - 0.00027 20.9 1.5 0.0029 17.5 0.0 2.5 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|282163093|ref|YP_003355478.1| - 0.00042 20.3 0.0 0.037 14.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|282163093|ref|YP_003355478.1| - 0.00061 19.4 0.1 0.0011 18.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_34 PF13601.6 gi|282163093|ref|YP_003355478.1| - 0.00077 19.6 0.2 0.0035 17.5 0.1 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain SMC_ScpB PF04079.16 gi|282163093|ref|YP_003355478.1| - 0.0024 17.5 0.8 0.18 11.4 0.1 1.5 1 1 1 2 2 2 2 Segregation and condensation complex subunit ScpB LexA_DNA_bind PF01726.16 gi|282163093|ref|YP_003355478.1| - 0.003 17.3 0.0 0.0054 16.5 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_11 PF08279.12 gi|282163093|ref|YP_003355478.1| - 0.0032 17.4 0.1 0.0081 16.1 0.0 1.7 2 0 0 2 2 1 1 HTH domain HTH_12 PF08461.10 gi|282163093|ref|YP_003355478.1| - 0.0039 17.1 1.8 0.022 14.7 0.2 2.5 2 1 1 3 3 2 1 Ribonuclease R winged-helix domain DUF655 PF04919.12 gi|282163093|ref|YP_003355478.1| - 0.0041 17.1 0.2 0.0049 16.8 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF655) Penicillinase_R PF03965.16 gi|282163093|ref|YP_003355478.1| - 0.006 16.9 0.3 0.01 16.2 0.3 1.6 1 1 0 1 1 1 1 Penicillinase repressor S10_plectin PF03501.15 gi|282163093|ref|YP_003355478.1| - 0.0065 16.5 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Plectin/S10 domain B-block_TFIIIC PF04182.12 gi|282163093|ref|YP_003355478.1| - 0.0081 16.3 0.0 0.015 15.5 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC Rrf2 PF02082.20 gi|282163093|ref|YP_003355478.1| - 0.0089 16.4 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator RQC PF09382.10 gi|282163093|ref|YP_003355478.1| - 0.0097 15.7 0.2 0.05 13.4 0.1 2.1 1 1 1 2 2 2 1 RQC domain HTH_IclR PF09339.10 gi|282163093|ref|YP_003355478.1| - 0.015 15.1 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain IreB PF06135.12 gi|282163093|ref|YP_003355478.1| - 0.018 15.2 0.1 3.7 7.8 0.0 2.6 1 1 1 2 2 2 0 IreB regulatory phosphoprotein TusA PF01206.17 gi|282163093|ref|YP_003355478.1| - 0.028 14.2 0.0 0.054 13.3 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA FeoC PF09012.10 gi|282163093|ref|YP_003355478.1| - 0.032 14.3 0.1 0.07 13.2 0.1 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HxlR PF01638.17 gi|282163093|ref|YP_003355478.1| - 0.038 13.8 0.1 0.81 9.6 0.0 2.3 2 0 0 2 2 2 0 HxlR-like helix-turn-helix DUF3116 PF11313.8 gi|282163093|ref|YP_003355478.1| - 0.049 13.5 0.2 0.11 12.4 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) DUF2087 PF09860.9 gi|282163093|ref|YP_003355478.1| - 0.059 13.5 0.1 0.22 11.7 0.0 2.0 3 0 0 3 3 2 0 Uncharacterized protein conserved in bacteria (DUF2087) HTH_38 PF13936.6 gi|282163093|ref|YP_003355478.1| - 0.066 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain EAP30 PF04157.16 gi|282163093|ref|YP_003355478.1| - 0.078 12.3 0.1 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_5 PF01022.20 gi|282163093|ref|YP_003355478.1| - 0.11 12.4 0.5 0.4 10.6 0.0 2.2 3 0 0 3 3 2 0 Bacterial regulatory protein, arsR family YtxH PF12732.7 gi|282163093|ref|YP_003355478.1| - 0.12 12.9 0.4 4.3 7.9 0.3 2.3 2 0 0 2 2 2 0 YtxH-like protein Ribosomal_S8 PF00410.19 gi|282163093|ref|YP_003355478.1| - 0.13 12.2 0.4 0.19 11.7 0.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S8 DUF4386 PF14329.6 gi|282163094|ref|YP_003355479.1| - 3.9e-52 177.2 31.1 4.4e-52 177.0 31.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4386) Flavodoxin_3 PF12641.7 gi|282163095|ref|YP_003355480.1| - 4.6e-08 32.9 0.0 8e-08 32.1 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|282163095|ref|YP_003355480.1| - 2.5e-07 31.0 0.0 3.5e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Ribosomal_L10 PF00466.20 gi|282163095|ref|YP_003355480.1| - 0.11 12.7 0.2 15 5.8 0.0 2.5 2 1 0 2 2 2 0 Ribosomal protein L10 HTH_27 PF13463.6 gi|282163096|ref|YP_003355481.1| - 9.9e-09 35.6 0.0 1.6e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|282163096|ref|YP_003355481.1| - 3.5e-07 30.1 0.0 7.1e-07 29.1 0.0 1.6 1 1 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|282163096|ref|YP_003355481.1| - 1.9e-06 27.7 0.0 3.4e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|282163096|ref|YP_003355481.1| - 2.5e-05 24.1 0.0 4.4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|282163096|ref|YP_003355481.1| - 0.00058 19.6 0.0 0.001 18.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|282163096|ref|YP_003355481.1| - 0.00066 19.2 0.0 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|282163096|ref|YP_003355481.1| - 0.002 18.0 0.0 0.0035 17.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|282163096|ref|YP_003355481.1| - 0.0023 18.1 0.0 0.0037 17.4 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC LexA_DNA_bind PF01726.16 gi|282163096|ref|YP_003355481.1| - 0.0079 15.9 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|282163096|ref|YP_003355481.1| - 0.011 15.7 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|282163096|ref|YP_003355481.1| - 0.013 15.8 0.0 0.023 15.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_15 PF12324.8 gi|282163096|ref|YP_003355481.1| - 0.018 14.9 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Fe_dep_repress PF01325.19 gi|282163096|ref|YP_003355481.1| - 0.021 15.0 0.0 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.6 gi|282163096|ref|YP_003355481.1| - 0.11 12.7 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4386 PF14329.6 gi|282163097|ref|YP_003355482.1| - 8.1e-38 130.4 28.3 9.2e-38 130.2 28.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4386) DUF3483 PF11982.8 gi|282163097|ref|YP_003355482.1| - 0.19 11.3 5.1 0.094 12.3 2.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3483) DUF3938 PF13074.6 gi|282163098|ref|YP_003355483.1| - 0.055 13.7 2.3 0.077 13.2 1.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3938) Vma12 PF11712.8 gi|282163098|ref|YP_003355483.1| - 4.5 7.3 5.2 0.86 9.7 0.5 1.9 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase P-II PF00543.22 gi|282163101|ref|YP_003355486.1| - 6e-33 113.5 0.2 6.7e-33 113.3 0.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|282163101|ref|YP_003355486.1| - 0.011 16.0 0.3 19 5.5 0.0 3.0 2 1 1 3 3 3 0 Cyclic-di-AMP receptor DUF853 PF05872.12 gi|282163102|ref|YP_003355487.1| - 3.5e-07 29.2 2.1 0.00072 18.3 0.0 3.5 3 0 0 3 3 3 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|282163102|ref|YP_003355487.1| - 8.1e-06 26.1 0.3 0.00012 22.2 0.0 2.7 3 1 0 3 3 3 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|282163102|ref|YP_003355487.1| - 1.9e-05 23.8 0.0 0.002 17.1 0.0 2.4 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|282163102|ref|YP_003355487.1| - 0.0029 16.6 0.0 3.3 6.5 0.0 3.2 3 0 0 3 3 3 2 AAA-like domain Apolipoprotein PF01442.18 gi|282163102|ref|YP_003355487.1| - 0.018 14.9 16.3 0.12 12.2 15.5 2.1 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain HSBP1 PF06825.12 gi|282163102|ref|YP_003355487.1| - 0.045 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Heat shock factor binding protein 1 Phage_GP20 PF06810.11 gi|282163102|ref|YP_003355487.1| - 0.077 12.8 7.7 1.9 8.3 1.5 2.3 2 0 0 2 2 2 0 Phage minor structural protein GP20 NPV_P10 PF05531.12 gi|282163102|ref|YP_003355487.1| - 0.11 12.9 3.6 0.16 12.4 0.7 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF883 PF05957.13 gi|282163102|ref|YP_003355487.1| - 0.26 11.9 11.2 2.3 8.9 3.4 2.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Phasin PF05597.11 gi|282163102|ref|YP_003355487.1| - 0.64 10.0 7.6 0.47 10.5 0.2 2.3 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF4407 PF14362.6 gi|282163102|ref|YP_003355487.1| - 0.76 9.1 14.0 1.3 8.3 14.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) OmpH PF03938.14 gi|282163102|ref|YP_003355487.1| - 1.1 9.6 15.4 3.5 7.9 2.3 2.4 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) DinB_2 PF12867.7 gi|282163102|ref|YP_003355487.1| - 1.2 9.6 3.6 46 4.5 0.2 3.5 2 2 1 3 3 3 0 DinB superfamily DUF4315 PF14193.6 gi|282163102|ref|YP_003355487.1| - 2.3 8.3 8.5 2.2 8.4 0.4 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4315) CdvA PF18822.1 gi|282163102|ref|YP_003355487.1| - 5.6 6.8 8.8 15 5.4 0.7 2.3 2 0 0 2 2 2 0 CdvA-like coiled-coil domain ATP11 PF06644.11 gi|282163102|ref|YP_003355487.1| - 6.7 6.4 8.6 0.25 11.1 2.7 1.6 2 0 0 2 2 2 0 ATP11 protein T3SS_needle_E PF08988.10 gi|282163102|ref|YP_003355487.1| - 7.7 6.7 7.6 31 4.8 1.7 2.9 2 0 0 2 2 2 0 Type III secretion system, cytoplasmic E component of needle Asp_Glu_race PF01177.22 gi|282163103|ref|YP_003355488.1| - 6.7e-59 199.5 0.0 7.5e-59 199.3 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Trep_Strep PF09605.10 gi|282163104|ref|YP_003355489.1| - 0.0034 17.4 1.0 0.0044 17.0 1.0 1.2 1 0 0 1 1 1 1 Hypothetical bacterial integral membrane protein (Trep_Strep) TauE PF01925.19 gi|282163104|ref|YP_003355489.1| - 0.0055 16.4 0.2 0.0057 16.3 0.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Peptidase_U4 PF03419.13 gi|282163104|ref|YP_003355489.1| - 0.0075 15.6 0.8 0.008 15.5 0.8 1.0 1 0 0 1 1 1 1 Sporulation factor SpoIIGA DUF2207 PF09972.9 gi|282163104|ref|YP_003355489.1| - 0.014 14.2 0.4 0.015 14.1 0.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3989 PF13150.6 gi|282163104|ref|YP_003355489.1| - 0.037 13.8 0.5 4 7.2 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) Phage_holin_3_6 PF07332.11 gi|282163104|ref|YP_003355489.1| - 0.046 13.8 0.1 0.055 13.5 0.1 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF3040 PF11239.8 gi|282163104|ref|YP_003355489.1| - 0.053 13.8 0.8 0.07 13.4 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) SPC12 PF06645.13 gi|282163104|ref|YP_003355489.1| - 0.11 12.6 2.7 0.15 12.2 2.7 1.2 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF2681 PF10883.8 gi|282163104|ref|YP_003355489.1| - 1 9.8 3.9 1.3 9.5 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2681) AAA PF00004.29 gi|282163105|ref|YP_003355490.1| - 2.1e-11 44.4 0.0 5.7e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|282163105|ref|YP_003355490.1| - 0.0013 19.0 0.2 1.6 9.0 0.0 2.7 2 1 1 3 3 2 2 AAA domain AAA_6 PF12774.7 gi|282163105|ref|YP_003355490.1| - 0.0051 15.8 0.5 0.81 8.6 0.1 2.3 1 1 1 2 2 2 2 Hydrolytic ATP binding site of dynein motor region Rad17 PF03215.15 gi|282163105|ref|YP_003355490.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain RuvB_N PF05496.12 gi|282163105|ref|YP_003355490.1| - 0.015 15.1 0.0 0.031 14.0 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 gi|282163105|ref|YP_003355490.1| - 0.022 14.3 0.6 0.056 13.0 0.2 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|282163105|ref|YP_003355490.1| - 0.025 14.6 0.0 0.065 13.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|282163105|ref|YP_003355490.1| - 0.026 14.3 0.0 0.058 13.1 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|282163105|ref|YP_003355490.1| - 0.057 13.8 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DUF815 PF05673.13 gi|282163105|ref|YP_003355490.1| - 0.059 12.5 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|282163105|ref|YP_003355490.1| - 0.059 13.6 0.0 0.28 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|282163105|ref|YP_003355490.1| - 0.062 13.7 0.0 0.23 11.8 0.0 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|282163105|ref|YP_003355490.1| - 0.17 11.6 0.0 0.43 10.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|282163105|ref|YP_003355490.1| - 0.17 11.8 0.2 14 5.6 0.0 2.5 2 1 0 2 2 2 0 NACHT domain AIRS PF00586.24 gi|282163106|ref|YP_003355491.1| - 2.8e-16 60.0 0.1 5.3e-16 59.1 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|282163106|ref|YP_003355491.1| - 3.8e-14 53.1 0.0 5.6e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Iso_dh PF00180.20 gi|282163107|ref|YP_003355492.1| - 1e-88 297.8 0.1 1.2e-88 297.6 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PGK PF00162.19 gi|282163108|ref|YP_003355493.1| - 2e-110 369.3 0.5 2.3e-110 369.1 0.5 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase SSF PF00474.17 gi|282163110|ref|YP_003355495.1| - 2.1e-52 178.4 43.6 3.3e-52 177.7 43.6 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family DUF1980 PF09323.10 gi|282163110|ref|YP_003355495.1| - 0.28 11.1 4.2 0.21 11.5 1.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1980) TrmB PF01978.19 gi|282163112|ref|YP_003355497.1| - 8.2e-20 70.5 0.4 1.8e-19 69.4 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|282163112|ref|YP_003355497.1| - 4.8e-05 22.7 0.1 8.7e-05 21.8 0.0 1.4 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.10 gi|282163112|ref|YP_003355497.1| - 0.027 14.3 0.1 0.086 12.7 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain ABC_export PF16962.5 gi|282163112|ref|YP_003355497.1| - 0.053 12.0 0.0 0.069 11.6 0.0 1.1 1 0 0 1 1 1 0 Putative ABC exporter TPR_11 PF13414.6 gi|282163113|ref|YP_003355498.1| - 3.8e-37 125.7 6.5 4.2e-13 48.8 0.5 4.1 1 1 3 4 4 4 4 TPR repeat TPR_2 PF07719.17 gi|282163113|ref|YP_003355498.1| - 5.8e-33 110.3 7.4 4.5e-08 32.6 0.1 4.4 5 0 0 5 5 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282163113|ref|YP_003355498.1| - 9e-32 107.6 4.1 3.8e-08 32.8 0.0 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282163113|ref|YP_003355498.1| - 9.8e-28 94.5 0.7 1.2e-06 28.5 0.1 5.0 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282163113|ref|YP_003355498.1| - 7.6e-24 81.9 1.8 1.5e-05 24.9 0.0 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282163113|ref|YP_003355498.1| - 6.7e-21 74.7 1.9 6.9e-11 42.6 0.1 2.8 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282163113|ref|YP_003355498.1| - 2.3e-19 68.4 3.3 2.9e-05 24.5 0.1 4.1 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282163113|ref|YP_003355498.1| - 2.8e-15 56.6 9.6 3.8e-07 30.5 0.8 3.0 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282163113|ref|YP_003355498.1| - 1e-12 47.1 2.3 0.0063 16.5 0.0 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282163113|ref|YP_003355498.1| - 1.1e-12 48.0 14.9 4.5e-05 23.7 0.7 3.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282163113|ref|YP_003355498.1| - 2.7e-12 46.5 3.1 0.009 16.6 0.0 5.1 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282163113|ref|YP_003355498.1| - 1.7e-11 43.6 12.8 0.0076 16.1 0.2 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat BTAD PF03704.17 gi|282163113|ref|YP_003355498.1| - 1e-07 32.5 5.0 0.0024 18.3 0.4 2.1 1 1 1 2 2 2 2 Bacterial transcriptional activator domain TPR_9 PF13371.6 gi|282163113|ref|YP_003355498.1| - 1.4e-07 31.5 1.1 0.00012 22.2 0.0 2.7 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|282163113|ref|YP_003355498.1| - 6.8e-07 28.8 0.5 0.11 11.7 0.1 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_21 PF09976.9 gi|282163113|ref|YP_003355498.1| - 3.4e-06 26.9 3.3 0.13 12.0 0.0 3.7 1 1 2 3 3 3 2 Tetratricopeptide repeat-like domain TPR_20 PF14561.6 gi|282163113|ref|YP_003355498.1| - 1.1e-05 25.7 2.3 0.064 13.6 0.0 3.2 1 1 2 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|282163113|ref|YP_003355498.1| - 4.5e-05 23.4 4.2 0.56 10.3 0.0 4.0 1 1 3 4 4 4 1 Fis1 C-terminal tetratricopeptide repeat TOM20_plant PF06552.12 gi|282163113|ref|YP_003355498.1| - 6.6e-05 22.7 0.1 1.7 8.3 0.0 4.1 1 1 2 3 3 3 1 Plant specific mitochondrial import receptor subunit TOM20 MIT PF04212.18 gi|282163113|ref|YP_003355498.1| - 0.0002 21.4 4.4 4.2 7.5 0.1 4.1 4 0 0 4 4 4 1 MIT (microtubule interacting and transport) domain NARP1 PF12569.8 gi|282163113|ref|YP_003355498.1| - 0.00027 20.0 1.8 0.14 11.1 0.1 2.6 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 TPR_5 PF12688.7 gi|282163113|ref|YP_003355498.1| - 0.0013 18.9 1.2 2.8 8.2 0.3 3.3 2 1 0 2 2 2 1 Tetratrico peptide repeat DUF3856 PF12968.7 gi|282163113|ref|YP_003355498.1| - 0.0021 18.1 1.0 3.1 7.9 0.4 3.4 1 1 1 2 2 2 1 Domain of Unknown Function (DUF3856) SHNi-TPR PF10516.9 gi|282163113|ref|YP_003355498.1| - 0.0021 17.4 0.6 10 5.6 0.0 4.0 4 0 0 4 4 4 0 SHNi-TPR ANAPC3 PF12895.7 gi|282163113|ref|YP_003355498.1| - 0.0051 17.0 1.0 0.014 15.6 0.1 2.1 2 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 Pec_lyase_N PF04431.13 gi|282163113|ref|YP_003355498.1| - 0.01 16.0 0.4 1.5 9.1 0.2 2.6 2 1 1 3 3 3 0 Pectate lyase, N terminus TPR_MalT PF17874.1 gi|282163113|ref|YP_003355498.1| - 0.012 15.0 0.1 0.019 14.4 0.1 1.4 1 0 0 1 1 1 0 MalT-like TPR region RPN7 PF10602.9 gi|282163113|ref|YP_003355498.1| - 0.018 14.7 3.0 0.36 10.5 0.5 3.1 1 1 3 4 4 4 0 26S proteasome subunit RPN7 Coatomer_E PF04733.14 gi|282163113|ref|YP_003355498.1| - 0.062 12.7 0.3 0.16 11.3 0.1 1.8 1 1 1 2 2 2 0 Coatomer epsilon subunit TPR_4 PF07721.14 gi|282163113|ref|YP_003355498.1| - 0.13 13.0 4.0 8.9 7.3 0.1 4.2 5 1 1 6 6 4 0 Tetratricopeptide repeat CysG_dimeriser PF10414.9 gi|282163113|ref|YP_003355498.1| - 0.3 10.9 3.4 5.2 6.9 0.0 3.2 3 0 0 3 3 3 0 Sirohaem synthase dimerisation region Aida_N PF08910.10 gi|282163113|ref|YP_003355498.1| - 0.41 11.0 2.2 19 5.7 0.0 3.2 3 1 1 4 4 3 0 Aida N-terminus Aldo_ket_red PF00248.21 gi|282163114|ref|YP_003355499.1| - 9.5e-28 97.2 0.0 3.2e-24 85.7 0.0 2.0 2 0 0 2 2 2 2 Aldo/keto reductase family NAD_synthase PF02540.17 gi|282163115|ref|YP_003355500.1| - 9.8e-59 198.4 0.0 1.7e-32 112.4 0.0 2.0 1 1 1 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|282163115|ref|YP_003355500.1| - 0.0023 16.8 0.0 0.037 12.8 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|282163115|ref|YP_003355500.1| - 0.0064 16.0 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|282163115|ref|YP_003355500.1| - 0.023 14.4 0.0 0.056 13.1 0.0 1.6 2 0 0 2 2 2 0 Asparagine synthase HMGL-like PF00682.19 gi|282163116|ref|YP_003355501.1| - 2e-36 125.9 0.0 2.7e-36 125.5 0.0 1.2 1 0 0 1 1 1 1 HMGL-like ATP-grasp_5 PF13549.6 gi|282163118|ref|YP_003355503.1| - 3.2e-67 226.3 1.4 3.5e-67 226.1 1.4 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|282163118|ref|YP_003355503.1| - 3.3e-05 23.5 0.8 0.00042 19.9 0.0 2.3 2 1 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|282163119|ref|YP_003355504.1| - 4.4e-54 182.0 5.4 8.9e-53 177.8 1.9 3.1 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|282163119|ref|YP_003355504.1| - 2.3e-23 82.9 0.1 9.7e-23 80.9 0.1 2.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|282163119|ref|YP_003355504.1| - 1.5e-12 48.0 0.6 6.8e-12 45.9 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain Dak1_2 PF13684.6 gi|282163119|ref|YP_003355504.1| - 0.0039 16.3 0.3 0.076 12.1 0.0 2.8 2 1 0 2 2 2 1 Dihydroxyacetone kinase family Peripla_BP_3 PF13377.6 gi|282163119|ref|YP_003355504.1| - 0.041 14.2 0.1 1.1 9.5 0.0 2.7 2 1 1 3 3 3 0 Periplasmic binding protein-like domain Ligase_CoA PF00549.19 gi|282163119|ref|YP_003355504.1| - 0.071 12.9 0.1 0.35 10.7 0.0 2.1 2 0 0 2 2 2 0 CoA-ligase ABC_tran PF00005.27 gi|282163120|ref|YP_003355505.1| - 1.8e-24 86.8 0.0 2.4e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163120|ref|YP_003355505.1| - 4.1e-10 39.9 0.0 8.9e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282163120|ref|YP_003355505.1| - 2.6e-08 33.6 0.0 6.4e-06 25.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282163120|ref|YP_003355505.1| - 6.9e-06 25.7 0.0 1.3e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|282163120|ref|YP_003355505.1| - 0.00059 20.1 0.0 0.0038 17.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|282163120|ref|YP_003355505.1| - 0.0021 18.6 0.0 0.0031 18.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|282163120|ref|YP_003355505.1| - 0.017 14.8 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|282163120|ref|YP_003355505.1| - 0.022 14.7 0.0 0.056 13.3 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase Dynamin_N PF00350.23 gi|282163120|ref|YP_003355505.1| - 0.028 14.5 0.2 0.045 13.8 0.2 1.3 1 0 0 1 1 1 0 Dynamin family AAA_28 PF13521.6 gi|282163120|ref|YP_003355505.1| - 0.038 14.2 0.1 0.074 13.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|282163120|ref|YP_003355505.1| - 0.057 12.9 0.0 0.12 11.8 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 NB-ARC PF00931.22 gi|282163120|ref|YP_003355505.1| - 0.063 12.5 0.2 1.2 8.3 0.1 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_16 PF13191.6 gi|282163120|ref|YP_003355505.1| - 0.064 13.6 0.0 0.091 13.1 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|282163120|ref|YP_003355505.1| - 0.065 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|282163120|ref|YP_003355505.1| - 0.077 13.3 0.0 0.3 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|282163120|ref|YP_003355505.1| - 0.095 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|282163120|ref|YP_003355505.1| - 0.1 12.7 0.1 0.24 11.5 0.1 1.6 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|282163120|ref|YP_003355505.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_18 PF13238.6 gi|282163120|ref|YP_003355505.1| - 0.11 13.1 0.1 0.42 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|282163120|ref|YP_003355505.1| - 0.13 11.9 0.1 1.4 8.5 0.2 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.9 gi|282163120|ref|YP_003355505.1| - 0.14 11.0 0.2 1.2 7.9 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.12 gi|282163120|ref|YP_003355505.1| - 0.23 11.4 0.1 0.37 10.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain DUF1284 PF06935.11 gi|282163121|ref|YP_003355506.1| - 7.7e-27 93.7 0.2 9.5e-27 93.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) DHquinase_I PF01487.15 gi|282163122|ref|YP_003355507.1| - 1.4e-52 179.2 0.0 1.6e-52 179.0 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Aldo_ket_red PF00248.21 gi|282163122|ref|YP_003355507.1| - 0.12 11.6 0.0 0.23 10.6 0.0 1.4 2 0 0 2 2 2 0 Aldo/keto reductase family DUF4346 PF14251.6 gi|282163123|ref|YP_003355508.1| - 1.6e-07 31.4 0.1 1.5e-05 25.0 0.0 2.7 2 1 1 3 3 3 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|282163123|ref|YP_003355508.1| - 9.5e-06 25.5 0.0 2.9e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.16 gi|282163123|ref|YP_003355508.1| - 0.0021 16.8 0.0 0.0038 16.0 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit PHP_C PF13263.6 gi|282163124|ref|YP_003355509.1| - 1.8e-17 62.8 0.3 5.3e-17 61.3 0.1 2.0 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|282163124|ref|YP_003355509.1| - 6.9e-10 39.5 0.0 1.5e-09 38.3 0.0 1.6 1 1 0 1 1 1 1 PHP domain HTH_AsnC-type PF13404.6 gi|282163125|ref|YP_003355510.1| - 2.5e-11 43.2 0.0 4.4e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|282163125|ref|YP_003355510.1| - 6.9e-10 38.8 0.2 1.2e-09 38.0 0.2 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|282163125|ref|YP_003355510.1| - 2.5e-08 33.4 0.1 6.6e-08 32.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|282163125|ref|YP_003355510.1| - 0.0012 18.8 0.0 0.0036 17.2 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|282163125|ref|YP_003355510.1| - 0.0016 18.2 0.1 0.0038 17.0 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|282163125|ref|YP_003355510.1| - 0.0032 17.4 0.0 0.0068 16.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|282163125|ref|YP_003355510.1| - 0.0034 17.2 0.0 0.0069 16.3 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|282163125|ref|YP_003355510.1| - 0.0036 17.5 0.0 0.0095 16.1 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 gi|282163125|ref|YP_003355510.1| - 0.029 14.2 0.0 0.053 13.3 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain MarR PF01047.22 gi|282163125|ref|YP_003355510.1| - 0.046 13.7 0.0 0.12 12.3 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|282163125|ref|YP_003355510.1| - 0.052 13.4 0.0 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_20 PF12840.7 gi|282163125|ref|YP_003355510.1| - 0.053 13.6 0.0 0.099 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|282163125|ref|YP_003355510.1| - 0.059 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|282163125|ref|YP_003355510.1| - 0.09 12.7 0.1 0.22 11.5 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB LZ_Tnp_IS481 PF13011.6 gi|282163125|ref|YP_003355510.1| - 0.2 12.2 0.0 0.33 11.5 0.0 1.3 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Cyt_bd_oxida_II PF02322.15 gi|282163126|ref|YP_003355511.1| - 0.048 13.0 5.2 0.055 12.8 5.2 1.0 1 0 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II VIT1 PF01988.19 gi|282163126|ref|YP_003355511.1| - 0.85 9.4 4.8 1.4 8.7 4.8 1.5 1 1 0 1 1 1 0 VIT family DUF202 PF02656.15 gi|282163126|ref|YP_003355511.1| - 1.8 9.0 7.6 1.1 9.8 1.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF202) DUF5381 PF17353.2 gi|282163126|ref|YP_003355511.1| - 5.9 6.6 9.3 1.1 9.0 6.3 1.4 2 0 0 2 2 2 0 Family of unknown function (DUF5381) CPBP PF02517.16 gi|282163128|ref|YP_003355513.1| - 3.4e-12 46.6 9.2 3.4e-12 46.6 9.2 2.8 3 0 0 3 3 3 1 CPBP intramembrane metalloprotease LapA_dom PF06305.11 gi|282163129|ref|YP_003355514.1| - 0.0008 19.2 2.1 0.00095 18.9 2.1 1.2 1 0 0 1 1 1 1 Lipopolysaccharide assembly protein A domain LPG_synthase_TM PF03706.13 gi|282163129|ref|YP_003355514.1| - 0.00084 19.0 0.9 0.00084 19.0 0.9 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF485 PF04341.12 gi|282163129|ref|YP_003355514.1| - 0.00098 19.0 0.2 0.001 18.9 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF485 Oxidored_q2 PF00420.24 gi|282163129|ref|YP_003355514.1| - 0.0011 18.5 0.1 0.0013 18.3 0.1 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CD34_antigen PF06365.12 gi|282163129|ref|YP_003355514.1| - 0.0023 17.5 0.1 0.0024 17.5 0.1 1.0 1 0 0 1 1 1 1 CD34/Podocalyxin family Vpu PF00558.19 gi|282163129|ref|YP_003355514.1| - 0.0043 16.8 1.5 0.0048 16.6 1.5 1.1 1 0 0 1 1 1 1 Vpu protein Phage_Gp23 PF10669.9 gi|282163129|ref|YP_003355514.1| - 0.034 14.5 2.1 0.036 14.4 2.1 1.1 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) FixQ PF05545.11 gi|282163129|ref|YP_003355514.1| - 0.08 12.9 3.0 0.14 12.1 3.0 1.6 1 1 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ DUF4834 PF16118.5 gi|282163129|ref|YP_003355514.1| - 0.082 13.9 0.2 0.082 13.9 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) DUF4381 PF14316.6 gi|282163129|ref|YP_003355514.1| - 0.12 12.6 1.1 0.13 12.5 1.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) DUF2207 PF09972.9 gi|282163129|ref|YP_003355514.1| - 0.23 10.2 0.5 0.23 10.2 0.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Sugarporin_N PF11471.8 gi|282163129|ref|YP_003355514.1| - 0.48 10.4 5.1 1.9 8.5 5.1 2.0 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension MttA_Hcf106 PF02416.16 gi|282163130|ref|YP_003355515.1| - 2.1e-16 59.0 0.4 2.6e-16 58.7 0.4 1.4 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4834 PF16118.5 gi|282163130|ref|YP_003355515.1| - 0.088 13.8 0.0 0.099 13.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) AhpC-TSA PF00578.21 gi|282163131|ref|YP_003355516.1| - 9.3e-35 119.2 0.0 1.2e-34 118.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|282163131|ref|YP_003355516.1| - 1.1e-16 60.9 0.0 1.3e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|282163131|ref|YP_003355516.1| - 2.7e-08 33.5 0.3 5.8e-08 32.5 0.1 1.7 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin SCO1-SenC PF02630.14 gi|282163131|ref|YP_003355516.1| - 0.00015 21.7 0.0 0.00024 21.0 0.0 1.4 1 1 0 1 1 1 1 SCO1/SenC EIAV_GP90 PF00971.18 gi|282163131|ref|YP_003355516.1| - 0.15 10.7 0.0 0.2 10.3 0.0 1.1 1 0 0 1 1 1 0 EIAV coat protein, gp90 Myosin_TH1 PF06017.13 gi|282163131|ref|YP_003355516.1| - 0.21 11.2 0.0 0.28 10.8 0.0 1.1 1 0 0 1 1 1 0 Unconventional myosin tail, actin- and lipid-binding Methyltransf_11 PF08241.12 gi|282163132|ref|YP_003355517.1| - 1.7e-22 79.8 0.0 2.9e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282163132|ref|YP_003355517.1| - 1.6e-21 76.8 0.0 2.9e-21 76.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282163132|ref|YP_003355517.1| - 1.9e-18 66.7 0.0 3e-18 66.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282163132|ref|YP_003355517.1| - 5.3e-15 55.4 0.0 7.8e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|282163132|ref|YP_003355517.1| - 3.7e-13 49.4 0.0 5.1e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|282163132|ref|YP_003355517.1| - 8.2e-12 45.7 0.0 1.8e-11 44.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163132|ref|YP_003355517.1| - 6.1e-09 35.9 0.0 8.4e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|282163132|ref|YP_003355517.1| - 1e-06 28.2 0.1 1.4e-06 27.9 0.1 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|282163132|ref|YP_003355517.1| - 4.1e-05 23.1 0.0 5.9e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.18 gi|282163132|ref|YP_003355517.1| - 4.8e-05 23.1 0.0 9e-05 22.2 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_8 PF05148.15 gi|282163132|ref|YP_003355517.1| - 9.6e-05 22.3 0.0 0.0029 17.5 0.0 2.1 2 0 0 2 2 2 1 Hypothetical methyltransferase Methyltransf_4 PF02390.17 gi|282163132|ref|YP_003355517.1| - 0.00043 19.8 0.0 0.0016 18.0 0.0 1.8 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|282163132|ref|YP_003355517.1| - 0.00092 18.6 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain DUF3267 PF11667.8 gi|282163132|ref|YP_003355517.1| - 0.0012 19.2 2.3 0.0025 18.1 2.3 1.5 1 0 0 1 1 1 1 Putative zincin peptidase MetW PF07021.12 gi|282163132|ref|YP_003355517.1| - 0.0023 17.6 0.0 0.005 16.5 0.0 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW N6_Mtase PF02384.16 gi|282163132|ref|YP_003355517.1| - 0.0053 16.1 0.0 0.0079 15.5 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase NodS PF05401.11 gi|282163132|ref|YP_003355517.1| - 0.0066 16.1 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_18 PF12847.7 gi|282163132|ref|YP_003355517.1| - 0.025 14.5 0.0 0.04 13.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|282163132|ref|YP_003355517.1| - 0.051 13.6 0.0 0.071 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF2207 PF09972.9 gi|282163132|ref|YP_003355517.1| - 0.12 11.2 3.1 0.15 10.8 2.3 1.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Hydrolase_4 PF12146.8 gi|282163133|ref|YP_003355518.1| - 6.3e-10 38.7 0.0 5.7e-09 35.6 0.0 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|282163133|ref|YP_003355518.1| - 4.7e-09 36.3 0.0 1.6e-08 34.5 0.0 1.8 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|282163133|ref|YP_003355518.1| - 2.8e-07 31.4 0.2 4.1e-07 30.8 0.2 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.20 gi|282163133|ref|YP_003355518.1| - 0.00066 19.9 0.0 0.00085 19.5 0.0 1.1 1 0 0 1 1 1 1 Thioesterase domain Lipase_3 PF01764.25 gi|282163133|ref|YP_003355518.1| - 0.021 14.7 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) Ser_hydrolase PF06821.13 gi|282163133|ref|YP_003355518.1| - 0.047 13.5 0.0 0.068 13.0 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase LIDHydrolase PF10230.9 gi|282163133|ref|YP_003355518.1| - 0.05 13.2 0.0 0.068 12.7 0.0 1.2 1 0 0 1 1 1 0 Lipid-droplet associated hydrolase Ndr PF03096.14 gi|282163133|ref|YP_003355518.1| - 0.058 12.1 0.0 0.1 11.3 0.0 1.4 2 0 0 2 2 2 0 Ndr family Abhydrolase_8 PF06259.12 gi|282163133|ref|YP_003355518.1| - 0.078 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase Esterase PF00756.20 gi|282163133|ref|YP_003355518.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Putative esterase BPL_N PF09825.9 gi|282163134|ref|YP_003355519.1| - 0.0064 15.6 0.8 0.4 9.7 0.3 2.0 2 0 0 2 2 2 2 Biotin-protein ligase, N terminal HIT PF01230.23 gi|282163136|ref|YP_003355521.1| - 0.01 16.6 0.1 0.015 16.0 0.1 1.3 1 0 0 1 1 1 0 HIT domain Spore_GerQ PF09671.10 gi|282163136|ref|YP_003355521.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Spore coat protein (Spore_GerQ) ABC_tran PF00005.27 gi|282163138|ref|YP_003355523.1| - 3.3e-32 111.9 0.0 5.2e-32 111.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163138|ref|YP_003355523.1| - 1.7e-11 44.5 0.7 2e-07 31.1 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|282163138|ref|YP_003355523.1| - 0.003 17.4 0.0 0.02 14.6 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|282163138|ref|YP_003355523.1| - 0.0043 16.5 0.0 1 8.7 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282163138|ref|YP_003355523.1| - 0.0063 16.2 0.1 0.014 15.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|282163138|ref|YP_003355523.1| - 0.0065 16.7 0.3 0.071 13.4 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|282163138|ref|YP_003355523.1| - 0.01 16.3 0.1 0.026 15.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|282163138|ref|YP_003355523.1| - 0.022 13.4 0.4 0.27 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|282163138|ref|YP_003355523.1| - 0.058 13.3 0.2 0.12 12.2 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase DUF87 PF01935.17 gi|282163138|ref|YP_003355523.1| - 0.075 13.1 4.1 3.7 7.6 0.8 2.6 3 0 0 3 3 3 0 Helicase HerA, central domain DUF4162 PF13732.6 gi|282163138|ref|YP_003355523.1| - 0.1 13.3 0.1 0.33 11.7 0.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|282163138|ref|YP_003355523.1| - 0.13 12.0 0.0 0.27 10.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.7 gi|282163140|ref|YP_003355525.1| - 2e-18 66.6 19.3 3.6e-18 65.8 19.3 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|282163140|ref|YP_003355525.1| - 1.9e-07 30.7 14.9 3.1e-07 30.0 14.9 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|282163140|ref|YP_003355525.1| - 6.7e-06 26.2 8.5 6.7e-06 26.2 8.5 2.7 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|282163140|ref|YP_003355525.1| - 9.7e-05 22.0 11.4 9.7e-05 22.0 11.4 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein YbhQ PF11076.8 gi|282163140|ref|YP_003355525.1| - 6.5 6.8 9.2 0.33 11.0 2.8 2.2 2 1 0 2 2 2 0 Putative inner membrane protein YbhQ Lactamase_B_2 PF12706.7 gi|282163141|ref|YP_003355526.1| - 4.1e-15 55.8 0.0 6e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|282163141|ref|YP_003355526.1| - 1.7e-05 24.7 0.0 2.7e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|282163141|ref|YP_003355526.1| - 1.8e-05 24.8 0.0 3.2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Nitro_FeMo-Co PF02579.17 gi|282163142|ref|YP_003355527.1| - 1.3e-15 57.5 0.1 1.4e-15 57.3 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Putative_PNPOx PF01243.20 gi|282163144|ref|YP_003355529.1| - 1.5e-15 57.2 0.0 1.8e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|282163144|ref|YP_003355529.1| - 9.1e-07 28.6 0.1 1.1e-06 28.3 0.1 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like STI1 PF17830.1 gi|282163144|ref|YP_003355529.1| - 0.03 14.3 0.2 0.072 13.0 0.1 1.7 2 0 0 2 2 2 0 STI1 domain MetOD2 PF18548.1 gi|282163145|ref|YP_003355530.1| - 3.4e-24 84.8 1.7 6.5e-24 83.9 1.7 1.5 1 0 0 1 1 1 1 Metanogen output domain 2 Response_reg PF00072.24 gi|282163145|ref|YP_003355530.1| - 1.2e-16 60.9 0.5 2.7e-16 59.7 0.3 1.7 1 1 0 1 1 1 1 Response regulator receiver domain Mod_r PF07200.13 gi|282163145|ref|YP_003355530.1| - 0.024 14.7 1.7 0.042 14.0 1.7 1.3 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DUF883 PF05957.13 gi|282163146|ref|YP_003355531.1| - 1.8e-10 41.2 0.7 3.6e-10 40.3 0.7 1.5 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) Apolipoprotein PF01442.18 gi|282163146|ref|YP_003355531.1| - 0.013 15.4 0.2 0.019 14.8 0.2 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Fer4 PF00037.27 gi|282163147|ref|YP_003355532.1| - 1.1e-12 47.2 13.5 2.1e-08 33.6 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282163147|ref|YP_003355532.1| - 7.8e-12 45.6 7.0 4.9e-07 30.2 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282163147|ref|YP_003355532.1| - 1.8e-11 44.0 23.2 3.4e-07 30.3 14.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282163147|ref|YP_003355532.1| - 4.4e-09 37.2 12.3 1.8e-06 28.8 3.0 2.4 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|282163147|ref|YP_003355532.1| - 7.9e-09 35.5 15.0 1.3e-08 34.8 15.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282163147|ref|YP_003355532.1| - 1.2e-08 34.6 13.9 5.4e-06 26.2 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282163147|ref|YP_003355532.1| - 3.3e-08 33.9 6.5 0.00017 22.1 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282163147|ref|YP_003355532.1| - 6e-08 32.7 13.9 9.3e-08 32.1 13.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282163147|ref|YP_003355532.1| - 2.2e-07 30.6 12.5 0.00046 20.1 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282163147|ref|YP_003355532.1| - 3.3e-07 30.7 7.6 0.00052 20.4 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282163147|ref|YP_003355532.1| - 0.00031 21.0 16.2 0.012 16.1 4.0 2.3 1 1 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|282163147|ref|YP_003355532.1| - 0.0027 18.5 21.1 0.0048 17.7 4.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|282163147|ref|YP_003355532.1| - 0.015 15.5 14.4 0.016 15.4 4.1 2.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain LsmAD PF06741.13 gi|282163147|ref|YP_003355532.1| - 0.17 12.4 0.5 0.29 11.7 0.5 1.3 1 0 0 1 1 1 0 LsmAD domain Fer4_22 PF17179.4 gi|282163147|ref|YP_003355532.1| - 0.21 12.5 14.2 0.12 13.2 2.1 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282163147|ref|YP_003355532.1| - 0.3 11.7 15.9 0.81 10.3 4.4 2.9 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|282163147|ref|YP_003355532.1| - 0.41 11.4 18.5 1.5 9.6 3.1 3.4 2 2 1 3 3 3 0 4Fe-4S single cluster domain Complex1_49kDa PF00346.19 gi|282163148|ref|YP_003355533.1| - 4.1e-61 206.5 0.1 6.2e-46 156.7 0.1 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|282163148|ref|YP_003355533.1| - 6.9e-10 38.4 0.6 7.9e-08 31.6 0.1 2.9 3 0 0 3 3 3 2 Nickel-dependent hydrogenase HNHc_6 PF16784.5 gi|282163148|ref|YP_003355533.1| - 0.061 12.9 0.1 1.3 8.5 0.0 2.1 2 0 0 2 2 2 0 Putative HNHc nuclease Complex1_30kDa PF00329.19 gi|282163149|ref|YP_003355534.1| - 2.9e-12 47.3 0.0 3.4e-12 47.1 0.0 1.0 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF881 PF05949.12 gi|282163149|ref|YP_003355534.1| - 0.06 13.2 0.1 0.066 13.1 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) Oxidored_q6 PF01058.22 gi|282163150|ref|YP_003355535.1| - 9.8e-26 90.1 2.8 1.5e-25 89.5 2.6 1.4 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NADHdh PF00146.21 gi|282163151|ref|YP_003355536.1| - 6.1e-50 170.2 22.1 8.8e-50 169.7 22.1 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Arc_PepC_II PF06847.11 gi|282163151|ref|YP_003355536.1| - 2.1 8.9 8.2 2.3 8.8 2.3 3.2 2 1 1 3 3 3 0 Archaeal Peptidase A24 C-terminus Type II Proton_antipo_M PF00361.20 gi|282163152|ref|YP_003355537.1| - 1e-59 202.2 31.1 1e-59 202.2 31.1 2.7 4 0 0 4 4 4 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|282163152|ref|YP_003355537.1| - 9.3e-13 48.0 1.1 9.3e-13 48.0 1.1 3.6 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF3611 PF12263.8 gi|282163152|ref|YP_003355537.1| - 0.0001 22.3 1.3 0.0001 22.3 1.3 4.0 4 1 1 5 5 5 1 Protein of unknown function (DUF3611) Hydrolase_3 PF08282.12 gi|282163153|ref|YP_003355538.1| - 9.9e-22 77.9 0.0 3.1e-11 43.5 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|282163153|ref|YP_003355538.1| - 1.7e-07 31.1 0.0 0.0042 16.6 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|282163153|ref|YP_003355538.1| - 0.0017 18.8 0.6 0.065 13.6 0.2 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|282163153|ref|YP_003355538.1| - 0.011 16.1 0.0 1.9 8.7 0.0 2.3 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Glyco_hydro_15 PF00723.21 gi|282163154|ref|YP_003355539.1| - 3.6e-36 124.9 0.0 2.2e-31 109.1 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 Glycos_transf_1 PF00534.20 gi|282163155|ref|YP_003355540.1| - 5.8e-47 159.4 0.0 8e-47 159.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282163155|ref|YP_003355540.1| - 9e-31 107.1 0.0 1.6e-30 106.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282163155|ref|YP_003355540.1| - 7.7e-19 68.3 0.1 7.7e-18 65.1 0.1 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|282163155|ref|YP_003355540.1| - 6.2e-12 46.2 0.0 2.4e-11 44.3 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|282163155|ref|YP_003355540.1| - 4.5e-08 33.4 0.0 2e-07 31.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|282163155|ref|YP_003355540.1| - 1.1e-06 28.5 0.0 2e-06 27.7 0.0 1.4 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_transf_20 PF00982.21 gi|282163155|ref|YP_003355540.1| - 1.9e-06 26.9 0.3 0.00016 20.5 0.2 2.5 2 1 0 2 2 2 2 Glycosyltransferase family 20 Glyco_trans_4_2 PF13477.6 gi|282163155|ref|YP_003355540.1| - 0.0001 22.3 0.0 0.0039 17.2 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like tRNA-synt_2 PF00152.20 gi|282163156|ref|YP_003355541.1| - 2.5e-84 283.0 0.0 3e-84 282.8 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|282163156|ref|YP_003355541.1| - 3.3e-13 49.4 0.1 5.9e-13 48.6 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RCC1 PF00415.18 gi|282163157|ref|YP_003355542.1| - 1.9e-63 210.9 39.3 2.9e-11 43.8 0.2 8.9 8 2 0 8 8 8 7 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|282163157|ref|YP_003355542.1| - 4.6e-61 201.6 48.5 8.4e-12 44.6 3.1 7.4 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat DUF1459 PF07312.11 gi|282163157|ref|YP_003355542.1| - 0.071 13.3 32.2 2.5 8.4 0.1 7.3 6 1 0 7 7 7 0 Protein of unknown function (DUF1459) LytB_WW PF18342.1 gi|282163157|ref|YP_003355542.1| - 0.16 12.1 1.7 8.5 6.6 0.1 3.2 3 0 0 3 3 3 0 Endo-beta-N-acetylglucosaminidase LytB WW domain ECSCR PF15820.5 gi|282163157|ref|YP_003355542.1| - 0.2 11.5 1.9 0.51 10.2 1.2 2.1 2 0 0 2 2 2 0 Endothelial cell-specific chemotaxis regulator MS_channel PF00924.18 gi|282163158|ref|YP_003355543.1| - 1.8e-44 151.8 0.5 1.8e-44 151.8 0.5 2.2 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|282163158|ref|YP_003355543.1| - 0.31 11.1 14.7 0.54 10.3 3.1 3.6 3 0 0 3 3 3 0 Conserved TM helix EI24 PF07264.11 gi|282163158|ref|YP_003355543.1| - 0.63 10.3 11.2 1.4 9.1 11.2 1.6 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Caa3_CtaG PF09678.10 gi|282163158|ref|YP_003355543.1| - 1.2 8.6 8.9 0.8 9.1 1.6 2.3 2 0 0 2 2 2 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) DUF2417 PF10329.9 gi|282163158|ref|YP_003355543.1| - 4.8 6.5 6.4 1.3 8.4 0.2 2.2 2 0 0 2 2 2 0 Region of unknown function (DUF2417) Aminotran_1_2 PF00155.21 gi|282163159|ref|YP_003355544.1| - 8.7e-70 235.7 0.0 9.9e-70 235.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|282163159|ref|YP_003355544.1| - 3.7e-10 39.7 0.0 5.5e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|282163159|ref|YP_003355544.1| - 7.8e-07 28.4 0.0 1.7e-06 27.2 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|282163159|ref|YP_003355544.1| - 0.00093 17.8 0.0 0.0014 17.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|282163159|ref|YP_003355544.1| - 0.0011 18.3 0.0 0.0016 17.8 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|282163159|ref|YP_003355544.1| - 0.0095 14.7 0.0 0.019 13.7 0.0 1.5 2 1 0 2 2 2 1 Orn/Lys/Arg decarboxylase, major domain AsnC_trans_reg PF01037.21 gi|282163160|ref|YP_003355545.1| - 1.6e-15 56.8 0.2 4.6e-15 55.3 0.1 1.8 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|282163160|ref|YP_003355545.1| - 3e-10 39.5 0.3 5e-10 38.8 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|282163160|ref|YP_003355545.1| - 1.6e-06 27.8 0.1 5.1e-06 26.2 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|282163160|ref|YP_003355545.1| - 2e-05 24.4 0.1 4.3e-05 23.3 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|282163160|ref|YP_003355545.1| - 0.00013 21.8 0.1 0.00059 19.7 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|282163160|ref|YP_003355545.1| - 0.00023 21.1 0.2 0.00046 20.1 0.1 1.6 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|282163160|ref|YP_003355545.1| - 0.0011 18.7 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|282163160|ref|YP_003355545.1| - 0.002 18.1 0.1 0.0036 17.2 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_29 PF13551.6 gi|282163160|ref|YP_003355545.1| - 0.0027 17.7 0.0 0.0047 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix Rrf2 PF02082.20 gi|282163160|ref|YP_003355545.1| - 0.0036 17.6 0.0 0.059 13.7 0.1 2.4 3 0 0 3 3 3 1 Transcriptional regulator MarR PF01047.22 gi|282163160|ref|YP_003355545.1| - 0.0039 17.1 0.1 0.0083 16.0 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|282163160|ref|YP_003355545.1| - 0.0046 16.8 0.1 0.007 16.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|282163160|ref|YP_003355545.1| - 0.0075 16.2 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|282163160|ref|YP_003355545.1| - 0.0093 15.8 0.3 0.016 15.0 0.3 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_17 PF12728.7 gi|282163160|ref|YP_003355545.1| - 0.012 15.8 0.2 0.043 14.0 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|282163160|ref|YP_003355545.1| - 0.013 15.0 0.0 2.4 7.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_Mga PF08280.11 gi|282163160|ref|YP_003355545.1| - 0.014 15.4 0.0 0.029 14.4 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain AsnC_trans_reg2 PF17805.1 gi|282163160|ref|YP_003355545.1| - 0.036 14.2 0.4 2.2 8.5 0.0 2.8 2 2 1 3 3 3 0 AsnC-like ligand binding domain Vir_act_alpha_C PF10400.9 gi|282163160|ref|YP_003355545.1| - 0.052 14.2 0.6 0.086 13.5 0.6 1.3 1 0 0 1 1 1 0 Virulence activator alpha C-term HTH_20 PF12840.7 gi|282163160|ref|YP_003355545.1| - 0.056 13.5 0.1 0.092 12.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|282163160|ref|YP_003355545.1| - 0.059 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_40 PF14493.6 gi|282163160|ref|YP_003355545.1| - 0.069 13.6 0.1 0.25 11.8 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|282163160|ref|YP_003355545.1| - 0.069 13.3 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) RepL PF05732.11 gi|282163160|ref|YP_003355545.1| - 0.069 12.6 0.1 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_28 PF13518.6 gi|282163160|ref|YP_003355545.1| - 0.086 13.0 0.1 0.28 11.4 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain DUF440 PF04269.12 gi|282163160|ref|YP_003355545.1| - 0.1 12.9 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF440 RPA_C PF08784.11 gi|282163160|ref|YP_003355545.1| - 0.1 13.2 0.0 0.22 12.2 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal SelB-wing_2 PF09106.11 gi|282163160|ref|YP_003355545.1| - 0.12 12.6 0.0 0.38 11.0 0.0 1.8 1 1 0 1 1 1 0 Elongation factor SelB, winged helix DUF3134 PF11332.8 gi|282163160|ref|YP_003355545.1| - 0.13 12.6 0.4 0.32 11.4 0.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3134) DUF2582 PF10771.9 gi|282163160|ref|YP_003355545.1| - 0.14 12.3 0.5 1.5 9.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix domain (DUF2582) CBFD_NFYB_HMF PF00808.23 gi|282163161|ref|YP_003355546.1| - 2e-14 53.6 0.1 2.2e-14 53.5 0.1 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|282163161|ref|YP_003355546.1| - 3.7e-11 43.5 0.0 4.5e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|282163161|ref|YP_003355546.1| - 4e-08 33.4 0.0 4.1e-08 33.3 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold Bromo_TP PF07524.13 gi|282163161|ref|YP_003355546.1| - 3.8e-07 30.0 0.0 3.9e-07 30.0 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TFIID-31kDa PF02291.15 gi|282163161|ref|YP_003355546.1| - 4.8e-05 23.4 0.0 5.5e-05 23.2 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-S PF15630.6 gi|282163161|ref|YP_003355546.1| - 0.00014 22.2 0.0 0.00015 22.1 0.0 1.2 1 0 0 1 1 1 1 CENP-S protein TFIID_20kDa PF03847.13 gi|282163161|ref|YP_003355546.1| - 0.00021 21.7 0.0 0.00024 21.6 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A CBS PF00571.28 gi|282163162|ref|YP_003355547.1| - 8.3e-21 74.2 0.2 5.1e-12 46.1 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|282163162|ref|YP_003355547.1| - 1.1e-12 47.8 0.0 3.4e-12 46.2 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|282163162|ref|YP_003355547.1| - 1e-08 35.4 0.0 2.2e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|282163162|ref|YP_003355547.1| - 4.2e-05 23.5 0.0 0.00011 22.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|282163162|ref|YP_003355547.1| - 0.00016 21.4 0.1 0.00056 19.7 0.0 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|282163162|ref|YP_003355547.1| - 0.0002 21.2 0.2 0.00092 19.1 0.1 2.2 2 1 1 3 3 3 1 Helix-turn-helix domain Pou PF00157.17 gi|282163162|ref|YP_003355547.1| - 0.0037 17.2 0.0 0.015 15.3 0.0 2.1 2 1 0 2 2 2 1 Pou domain - N-terminal to homeobox domain MqsA_antitoxin PF15731.5 gi|282163162|ref|YP_003355547.1| - 0.026 14.6 0.0 0.044 13.9 0.0 1.4 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_26 PF13443.6 gi|282163162|ref|YP_003355547.1| - 0.064 13.7 0.1 0.62 10.5 0.0 2.5 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain MarR_2 PF12802.7 gi|282163162|ref|YP_003355547.1| - 0.095 12.6 0.1 0.5 10.3 0.0 2.2 3 0 0 3 3 3 0 MarR family HTH_24 PF13412.6 gi|282163162|ref|YP_003355547.1| - 0.12 11.9 1.5 3.2 7.4 0.1 3.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding CarboxypepD_reg PF13620.6 gi|282163163|ref|YP_003355548.1| - 1.7e-07 31.4 5.0 3.4e-07 30.5 0.4 3.4 3 1 0 3 3 3 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|282163163|ref|YP_003355548.1| - 8.3e-05 22.5 0.9 0.00022 21.2 0.9 1.7 1 0 0 1 1 1 1 CarboxypepD_reg-like domain NPCBM_assoc PF10633.9 gi|282163163|ref|YP_003355548.1| - 0.00011 22.4 0.3 0.00092 19.4 0.2 2.5 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TIG PF01833.24 gi|282163163|ref|YP_003355548.1| - 0.064 13.3 0.9 43 4.3 0.1 3.8 4 0 0 4 4 4 0 IPT/TIG domain Big_3_4 PF13754.6 gi|282163163|ref|YP_003355548.1| - 0.07 12.9 0.1 0.32 10.8 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function PDDEXK_3 PF13366.6 gi|282163164|ref|YP_003355549.1| - 1.3e-40 138.4 1.2 1.5e-40 138.2 1.2 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF2124 PF09897.9 gi|282163165|ref|YP_003355550.1| - 2.9e-49 166.6 0.0 3.3e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) NRD1_2 PF01995.16 gi|282163166|ref|YP_003355551.1| - 1.2e-91 306.3 0.4 1.7e-91 305.8 0.4 1.2 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|282163166|ref|YP_003355551.1| - 3.2e-25 87.8 2.1 8.8e-25 86.4 2.1 1.8 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_21 PF13276.6 gi|282163166|ref|YP_003355551.1| - 0.0003 20.9 0.4 0.00086 19.4 0.4 1.8 1 0 0 1 1 1 1 HTH-like domain CTP_synth_N PF06418.14 gi|282163167|ref|YP_003355552.1| - 4.6e-127 422.8 2.7 6.1e-127 422.4 2.7 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|282163167|ref|YP_003355552.1| - 6.7e-56 189.1 0.0 1.4e-55 188.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|282163167|ref|YP_003355552.1| - 1.2e-09 38.3 0.0 1e-08 35.2 0.0 2.2 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|282163167|ref|YP_003355552.1| - 0.00014 21.9 0.0 0.00038 20.5 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.17 gi|282163168|ref|YP_003355553.1| - 1e-43 149.2 0.0 1.1e-43 149.0 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|282163168|ref|YP_003355553.1| - 5e-07 30.1 0.0 5.8e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|282163168|ref|YP_003355553.1| - 3.2e-05 24.5 0.0 5.4e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain dNK PF01712.19 gi|282163168|ref|YP_003355553.1| - 7.9e-05 22.6 0.1 0.019 14.9 0.1 2.3 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_22 PF13401.6 gi|282163168|ref|YP_003355553.1| - 8.4e-05 22.9 0.0 0.0013 19.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|282163168|ref|YP_003355553.1| - 0.00016 21.8 0.0 0.00031 20.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain PPK2 PF03976.14 gi|282163168|ref|YP_003355553.1| - 0.0023 17.5 0.1 0.0043 16.6 0.0 1.5 2 0 0 2 2 2 1 Polyphosphate kinase 2 (PPK2) AAA_30 PF13604.6 gi|282163168|ref|YP_003355553.1| - 0.0031 17.3 0.1 0.0052 16.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|282163168|ref|YP_003355553.1| - 0.0049 17.3 0.2 0.029 14.8 0.1 2.3 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|282163168|ref|YP_003355553.1| - 0.12 12.8 0.1 0.14 12.6 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain Ploopntkinase2 PF18747.1 gi|282163168|ref|YP_003355553.1| - 0.19 11.0 0.1 0.28 10.4 0.1 1.2 1 0 0 1 1 1 0 P-loop Nucleotide Kinase2 MMPL PF03176.15 gi|282163170|ref|YP_003355555.1| - 0.28 10.1 7.5 0.3 10.0 7.5 1.1 1 0 0 1 1 1 0 MMPL family Wzy_C PF04932.15 gi|282163170|ref|YP_003355555.1| - 0.31 10.6 3.1 0.33 10.6 3.1 1.2 1 0 0 1 1 1 0 O-Antigen ligase DUF4131 PF13567.6 gi|282163170|ref|YP_003355555.1| - 1.9 8.1 4.9 2.1 8.0 4.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2892 PF11127.8 gi|282163170|ref|YP_003355555.1| - 5.1 7.2 10.0 9.2 6.4 10.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) TrmB PF01978.19 gi|282163172|ref|YP_003355557.1| - 3.3e-06 26.9 0.0 5.7e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|282163172|ref|YP_003355557.1| - 4.4e-06 26.5 0.1 8.5e-06 25.6 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|282163172|ref|YP_003355557.1| - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|282163172|ref|YP_003355557.1| - 0.00014 21.3 0.1 0.00074 19.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|282163172|ref|YP_003355557.1| - 0.00021 21.3 0.0 0.00048 20.2 0.0 1.6 1 0 0 1 1 1 1 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|282163172|ref|YP_003355557.1| - 0.00026 20.9 0.0 0.00047 20.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Phage_rep_O PF04492.13 gi|282163172|ref|YP_003355557.1| - 0.0024 18.4 0.0 0.022 15.3 0.0 2.0 1 1 1 2 2 2 1 Bacteriophage replication protein O HTH_27 PF13463.6 gi|282163172|ref|YP_003355557.1| - 0.0029 18.1 0.0 0.0067 16.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain SMC_ScpB PF04079.16 gi|282163172|ref|YP_003355557.1| - 0.0056 16.3 0.1 0.011 15.4 0.0 1.5 1 1 0 1 1 1 1 Segregation and condensation complex subunit ScpB TFIIE_alpha PF02002.17 gi|282163172|ref|YP_003355557.1| - 0.013 15.4 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_IclR PF09339.10 gi|282163172|ref|YP_003355557.1| - 0.021 14.6 0.0 0.043 13.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain GntR PF00392.21 gi|282163172|ref|YP_003355557.1| - 0.022 14.4 0.1 0.039 13.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|282163172|ref|YP_003355557.1| - 0.025 14.8 0.1 0.1 12.8 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Dimerisation2 PF16864.5 gi|282163172|ref|YP_003355557.1| - 0.054 13.5 0.0 0.089 12.8 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain HTH_36 PF13730.6 gi|282163172|ref|YP_003355557.1| - 0.074 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|282163172|ref|YP_003355557.1| - 0.074 13.1 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Peptidase_C50 PF03568.17 gi|282163172|ref|YP_003355557.1| - 0.078 12.1 0.0 0.083 12.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family C50 DUF4393 PF14337.6 gi|282163172|ref|YP_003355557.1| - 0.091 12.6 0.1 0.14 11.9 0.0 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF4393) Penicillinase_R PF03965.16 gi|282163172|ref|YP_003355557.1| - 0.098 13.0 0.1 0.15 12.4 0.1 1.3 1 0 0 1 1 1 0 Penicillinase repressor HTH_5 PF01022.20 gi|282163172|ref|YP_003355557.1| - 0.11 12.4 0.0 0.3 11.0 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Fer4 PF00037.27 gi|282163173|ref|YP_003355558.1| - 3.9e-15 54.9 13.2 7.1e-08 31.9 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282163173|ref|YP_003355558.1| - 1.3e-13 51.3 35.1 5.5e-08 33.3 13.4 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282163173|ref|YP_003355558.1| - 1.7e-10 41.7 7.5 3.5e-05 24.6 0.4 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|282163173|ref|YP_003355558.1| - 2.5e-10 39.9 13.2 1.7e-05 24.7 3.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282163173|ref|YP_003355558.1| - 2.8e-10 39.7 13.7 1.5e-05 24.8 2.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282163173|ref|YP_003355558.1| - 2.4e-08 34.0 22.9 3.7e-06 27.0 13.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282163173|ref|YP_003355558.1| - 4.5e-08 33.1 13.5 0.00016 21.7 3.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282163173|ref|YP_003355558.1| - 1.2e-06 28.5 11.9 4e-06 26.9 11.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282163173|ref|YP_003355558.1| - 2.6e-05 24.4 13.5 0.013 15.9 3.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|282163173|ref|YP_003355558.1| - 0.00014 22.5 19.9 0.035 15.0 6.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|282163173|ref|YP_003355558.1| - 0.00015 22.2 12.2 0.029 14.9 3.5 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|282163173|ref|YP_003355558.1| - 0.00024 21.5 14.7 0.016 15.7 2.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282163173|ref|YP_003355558.1| - 0.00035 21.0 14.0 0.012 16.2 2.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|282163173|ref|YP_003355558.1| - 0.01 16.7 9.2 0.19 12.6 1.4 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282163173|ref|YP_003355558.1| - 0.019 15.1 12.3 0.2 11.9 2.8 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282163173|ref|YP_003355558.1| - 0.047 14.4 11.8 0.054 14.2 1.9 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain Desulfoferrod_N PF06397.12 gi|282163173|ref|YP_003355558.1| - 0.071 12.7 9.5 0.19 11.4 1.3 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Mut7-C PF01927.16 gi|282163173|ref|YP_003355558.1| - 0.31 11.1 4.1 0.33 11.0 4.1 1.0 1 0 0 1 1 1 0 Mut7-C RNAse domain FAD_binding_3 PF01494.19 gi|282163174|ref|YP_003355559.1| - 9e-20 71.2 0.4 1.2e-10 41.2 0.0 2.4 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|282163174|ref|YP_003355559.1| - 4.3e-12 45.8 5.8 5e-08 32.5 0.5 2.6 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|282163174|ref|YP_003355559.1| - 5.1e-11 42.6 5.7 1.2e-10 41.4 5.7 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|282163174|ref|YP_003355559.1| - 2.2e-09 36.6 0.3 5.8e-09 35.1 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|282163174|ref|YP_003355559.1| - 3.1e-09 36.9 3.1 6.7e-05 22.6 0.4 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|282163174|ref|YP_003355559.1| - 8.5e-08 31.6 0.2 2.1e-05 23.8 0.2 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|282163174|ref|YP_003355559.1| - 1.3e-07 31.7 0.0 4.3e-07 30.1 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|282163174|ref|YP_003355559.1| - 3.9e-07 29.3 0.5 0.012 14.5 0.1 2.8 2 1 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|282163174|ref|YP_003355559.1| - 1.8e-06 27.4 3.5 9.6e-06 25.0 3.5 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|282163174|ref|YP_003355559.1| - 2.3e-06 26.9 3.5 6.4e-06 25.5 3.5 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|282163174|ref|YP_003355559.1| - 2.1e-05 23.9 0.0 5.6e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|282163174|ref|YP_003355559.1| - 0.0021 17.4 0.2 0.0044 16.3 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|282163174|ref|YP_003355559.1| - 0.023 14.0 0.1 0.023 14.0 0.1 1.9 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain SE PF08491.10 gi|282163174|ref|YP_003355559.1| - 0.028 13.5 0.0 0.048 12.7 0.0 1.4 1 0 0 1 1 1 0 Squalene epoxidase XdhC_C PF13478.6 gi|282163174|ref|YP_003355559.1| - 0.057 13.9 0.1 0.41 11.2 0.0 2.3 3 0 0 3 3 2 0 XdhC Rossmann domain Pyr_redox PF00070.27 gi|282163174|ref|YP_003355559.1| - 0.07 13.7 0.8 0.5 11.0 0.1 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase KptA_kDCL PF18176.1 gi|282163174|ref|YP_003355559.1| - 0.077 12.9 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 KptA in kinetoplastid DICER domain 3HCDH_N PF02737.18 gi|282163174|ref|YP_003355559.1| - 0.16 11.9 0.1 0.16 11.9 0.1 2.3 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain cNMP_binding PF00027.29 gi|282163176|ref|YP_003355561.1| - 0.095 12.8 0.1 0.23 11.5 0.1 1.7 1 1 0 1 1 1 0 Cyclic nucleotide-binding domain HypA PF01155.19 gi|282163177|ref|YP_003355562.1| - 2e-05 24.5 0.6 2.1e-05 24.5 0.6 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|282163177|ref|YP_003355562.1| - 4.9e-05 23.2 0.4 0.1 12.6 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|282163177|ref|YP_003355562.1| - 9.7e-05 22.4 4.1 0.0002 21.4 4.1 1.5 1 1 0 1 1 1 1 Zinc ribbon domain zf-IS66 PF13005.7 gi|282163177|ref|YP_003355562.1| - 0.00048 20.5 0.7 0.67 10.4 0.0 2.1 2 0 0 2 2 2 2 zinc-finger binding domain of transposase IS66 zinc-ribbons_6 PF07191.12 gi|282163177|ref|YP_003355562.1| - 0.0037 17.2 0.5 0.0037 17.2 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbons TFIIS_C PF01096.18 gi|282163177|ref|YP_003355562.1| - 0.0075 16.1 3.1 0.47 10.4 1.0 2.1 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Prok-RING_1 PF14446.6 gi|282163177|ref|YP_003355562.1| - 0.0085 16.0 2.0 0.013 15.5 2.0 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Zn_Tnp_IS91 PF14319.6 gi|282163177|ref|YP_003355562.1| - 0.012 15.6 0.2 0.014 15.4 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_9 PF14369.6 gi|282163177|ref|YP_003355562.1| - 0.016 15.4 0.6 0.58 10.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon DUF35_N PF12172.8 gi|282163177|ref|YP_003355562.1| - 0.038 13.9 4.5 0.06 13.2 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2072 PF09845.9 gi|282163177|ref|YP_003355562.1| - 0.085 13.1 2.0 0.094 13.0 2.0 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein Zn_Tnp_IS1 PF03811.13 gi|282163177|ref|YP_003355562.1| - 0.19 11.5 4.7 2.2 8.1 0.4 2.2 2 0 0 2 2 2 0 InsA N-terminal domain DUF1272 PF06906.11 gi|282163177|ref|YP_003355562.1| - 0.26 11.4 4.0 0.61 10.2 4.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-ISL3 PF14690.6 gi|282163177|ref|YP_003355562.1| - 0.9 10.3 7.0 7.4 7.3 1.5 2.3 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-H2C2_2 PF13465.6 gi|282163177|ref|YP_003355562.1| - 0.99 10.0 8.4 0.67 10.5 2.9 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2 PF00096.26 gi|282163177|ref|YP_003355562.1| - 5.5 7.6 6.8 0.78 10.3 0.9 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Fumerase_C PF05683.12 gi|282163178|ref|YP_003355563.1| - 2.8e-42 144.4 0.1 3.1e-42 144.2 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.14 gi|282163179|ref|YP_003355564.1| - 5e-96 321.3 0.0 5.8e-96 321.1 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) AI-2E_transport PF01594.16 gi|282163180|ref|YP_003355565.1| - 1.4e-43 149.3 39.9 3.6e-43 148.0 39.9 1.5 1 1 0 1 1 1 1 AI-2E family transporter IBV_3C PF03620.13 gi|282163180|ref|YP_003355565.1| - 8.2 7.0 9.2 1 9.9 2.9 2.7 3 0 0 3 3 3 0 IBV 3C protein UPF0004 PF00919.20 gi|282163181|ref|YP_003355566.1| - 4.2e-18 65.2 0.3 7.2e-18 64.5 0.3 1.3 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 gi|282163181|ref|YP_003355566.1| - 3.5e-17 63.3 0.0 7.4e-17 62.2 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.20 gi|282163181|ref|YP_003355566.1| - 5.4e-05 23.1 0.0 0.00012 22.0 0.0 1.5 1 0 0 1 1 1 1 TRAM domain MCR_beta PF02241.18 gi|282163182|ref|YP_003355567.1| - 6.8e-134 445.2 2.7 6.8e-134 445.2 2.7 1.4 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|282163182|ref|YP_003355567.1| - 4.6e-83 277.3 2.6 4.6e-83 277.3 2.6 1.9 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.14 gi|282163183|ref|YP_003355568.1| - 6.4e-50 168.7 0.1 7.3e-50 168.5 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_C PF04609.12 gi|282163184|ref|YP_003355569.1| - 2.8e-08 33.2 1.9 6.6e-08 32.0 1.9 1.5 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_gamma PF02240.16 gi|282163185|ref|YP_003355570.1| - 1.5e-126 420.7 0.1 1.7e-126 420.5 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.15 gi|282163186|ref|YP_003355571.1| - 4e-149 495.3 0.9 5.1e-149 495.0 0.9 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|282163186|ref|YP_003355571.1| - 6.5e-68 227.0 5.8 1.4e-67 225.9 5.8 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain dTDP_sugar_isom PF00908.17 gi|282163187|ref|YP_003355572.1| - 2.4e-11 43.6 0.0 2.8e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.11 gi|282163187|ref|YP_003355572.1| - 3.2e-07 30.1 0.0 3.6e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.11 gi|282163187|ref|YP_003355572.1| - 0.11 12.2 0.0 3.4 7.4 0.0 2.2 2 0 0 2 2 2 0 Cupin domain PvlArgDC PF01862.16 gi|282163188|ref|YP_003355573.1| - 3.8e-59 199.1 0.0 4.2e-59 199.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DUF134 PF02001.16 gi|282163189|ref|YP_003355574.1| - 7.6e-24 84.1 0.0 1e-23 83.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|282163189|ref|YP_003355574.1| - 3.7e-05 23.3 0.0 6e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 gi|282163189|ref|YP_003355574.1| - 0.0015 18.3 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HypA PF01155.19 gi|282163189|ref|YP_003355574.1| - 0.0047 16.9 1.8 0.0082 16.2 1.8 1.6 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_29 PF13551.6 gi|282163189|ref|YP_003355574.1| - 0.0074 16.3 1.3 0.016 15.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|282163189|ref|YP_003355574.1| - 0.012 15.4 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Zn_Tnp_IS1 PF03811.13 gi|282163189|ref|YP_003355574.1| - 0.017 14.8 1.9 0.017 14.8 1.9 2.5 2 1 0 2 2 2 0 InsA N-terminal domain HTH_8 PF02954.19 gi|282163189|ref|YP_003355574.1| - 0.028 14.2 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family RNA_POL_M_15KD PF02150.16 gi|282163189|ref|YP_003355574.1| - 0.045 13.6 3.6 0.14 12.1 3.6 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|282163189|ref|YP_003355574.1| - 1 9.5 6.5 0.24 11.6 2.8 1.9 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|282163189|ref|YP_003355574.1| - 1.7 8.2 8.0 3.8 7.1 1.7 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding Nitro_FeMo-Co PF02579.17 gi|282163190|ref|YP_003355575.1| - 2.7e-20 72.5 0.0 3.4e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ParA PF10609.9 gi|282163191|ref|YP_003355576.1| - 2.6e-87 292.4 0.1 3.1e-87 292.1 0.1 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|282163191|ref|YP_003355576.1| - 4.5e-19 68.8 0.0 1.3e-18 67.3 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|282163191|ref|YP_003355576.1| - 1.2e-08 35.1 0.8 2.6e-07 30.7 0.8 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|282163191|ref|YP_003355576.1| - 1e-07 31.5 0.0 1.7e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|282163191|ref|YP_003355576.1| - 4.9e-07 29.2 0.8 2.4e-06 27.0 0.6 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|282163191|ref|YP_003355576.1| - 1.9e-05 24.5 0.7 0.24 11.2 0.0 2.6 3 0 0 3 3 3 2 AAA domain CBP_BcsQ PF06564.12 gi|282163191|ref|YP_003355576.1| - 0.00014 21.5 0.1 0.0042 16.6 0.1 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|282163191|ref|YP_003355576.1| - 0.0009 18.8 0.2 0.0071 15.8 0.2 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MeaB PF03308.16 gi|282163191|ref|YP_003355576.1| - 0.0018 17.3 0.0 0.0027 16.7 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB VirC1 PF07015.11 gi|282163191|ref|YP_003355576.1| - 0.0057 16.0 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.6 gi|282163191|ref|YP_003355576.1| - 0.0065 16.1 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|282163191|ref|YP_003355576.1| - 0.013 15.3 0.2 0.022 14.5 0.2 1.3 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|282163191|ref|YP_003355576.1| - 0.023 14.5 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|282163191|ref|YP_003355576.1| - 0.025 14.5 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase RsgA_GTPase PF03193.16 gi|282163191|ref|YP_003355576.1| - 0.084 12.8 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|282163191|ref|YP_003355576.1| - 0.096 13.1 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|282163191|ref|YP_003355576.1| - 0.12 12.0 0.3 0.19 11.3 0.3 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|282163191|ref|YP_003355576.1| - 0.15 11.9 0.3 0.35 10.8 0.3 1.5 1 0 0 1 1 1 0 NTPase RseC_MucC PF04246.12 gi|282163191|ref|YP_003355576.1| - 0.17 11.8 2.2 0.34 10.9 2.2 1.5 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC ABC_tran PF00005.27 gi|282163192|ref|YP_003355577.1| - 6.1e-52 175.8 0.0 1.4e-26 93.6 0.0 2.6 2 1 0 2 2 2 2 ABC transporter RsgA_GTPase PF03193.16 gi|282163192|ref|YP_003355577.1| - 1.4e-07 31.6 0.9 0.0041 17.1 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase SMC_N PF02463.19 gi|282163192|ref|YP_003355577.1| - 1.2e-05 24.8 3.6 0.023 14.1 0.0 3.9 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|282163192|ref|YP_003355577.1| - 6.4e-05 23.0 3.5 0.1 12.7 0.4 3.2 3 0 0 3 3 3 2 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|282163192|ref|YP_003355577.1| - 6.9e-05 22.5 1.7 0.13 12.1 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|282163192|ref|YP_003355577.1| - 0.00012 22.6 0.0 0.37 11.2 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|282163192|ref|YP_003355577.1| - 0.00012 22.0 5.5 0.17 11.7 0.1 4.0 3 1 1 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|282163192|ref|YP_003355577.1| - 0.0005 20.4 0.3 0.55 10.5 0.1 2.6 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|282163192|ref|YP_003355577.1| - 0.00054 19.9 0.6 1.2 9.0 0.0 2.4 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B PIF1 PF05970.14 gi|282163192|ref|YP_003355577.1| - 0.0015 17.8 0.1 0.85 8.7 0.0 2.9 3 0 0 3 3 3 1 PIF1-like helicase PduV-EutP PF10662.9 gi|282163192|ref|YP_003355577.1| - 0.0016 18.2 0.0 1.5 8.6 0.0 2.6 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 gi|282163192|ref|YP_003355577.1| - 0.0023 18.5 1.1 2.1 8.9 0.1 3.2 3 0 0 3 3 3 1 AAA domain ATP-synt_ab PF00006.25 gi|282163192|ref|YP_003355577.1| - 0.0074 16.0 0.2 0.32 10.6 0.0 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain FeoB_N PF02421.18 gi|282163192|ref|YP_003355577.1| - 0.011 15.2 1.2 12 5.4 0.0 3.4 3 0 0 3 3 3 0 Ferrous iron transport protein B NB-ARC PF00931.22 gi|282163192|ref|YP_003355577.1| - 0.014 14.6 1.2 0.44 9.7 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.6 gi|282163192|ref|YP_003355577.1| - 0.016 15.7 3.8 1.9 9.0 1.2 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|282163192|ref|YP_003355577.1| - 0.017 14.9 0.3 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|282163192|ref|YP_003355577.1| - 0.017 14.9 0.5 1.5 8.5 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein PRK PF00485.18 gi|282163192|ref|YP_003355577.1| - 0.02 14.6 2.1 2.7 7.7 0.1 2.9 3 0 0 3 3 3 0 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.6 gi|282163192|ref|YP_003355577.1| - 0.022 15.0 2.0 3.6 7.8 0.4 3.3 3 0 0 3 3 3 0 AAA domain DUF87 PF01935.17 gi|282163192|ref|YP_003355577.1| - 0.023 14.8 1.1 16 5.5 0.1 3.2 3 0 0 3 3 3 0 Helicase HerA, central domain Zeta_toxin PF06414.12 gi|282163192|ref|YP_003355577.1| - 0.024 13.9 0.0 0.49 9.6 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin PhoH PF02562.16 gi|282163192|ref|YP_003355577.1| - 0.029 13.8 0.2 4.5 6.7 0.0 2.7 3 0 0 3 3 3 0 PhoH-like protein SbcCD_C PF13558.6 gi|282163192|ref|YP_003355577.1| - 0.039 14.2 0.0 14 6.0 0.0 3.2 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit dNK PF01712.19 gi|282163192|ref|YP_003355577.1| - 0.059 13.2 0.1 0.5 10.2 0.0 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase AAA PF00004.29 gi|282163192|ref|YP_003355577.1| - 0.059 13.8 1.2 29 5.1 0.0 3.2 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 gi|282163192|ref|YP_003355577.1| - 0.066 12.6 0.3 2.2 7.6 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.6 gi|282163192|ref|YP_003355577.1| - 0.066 12.8 0.1 43 3.6 0.0 3.2 3 0 0 3 3 3 0 AAA domain T2SSE PF00437.20 gi|282163192|ref|YP_003355577.1| - 0.069 12.2 1.8 0.74 8.8 0.1 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|282163192|ref|YP_003355577.1| - 0.085 13.3 0.1 12 6.4 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_7 PF12775.7 gi|282163192|ref|YP_003355577.1| - 0.095 12.2 0.2 11 5.5 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region DnaB_C PF03796.15 gi|282163192|ref|YP_003355577.1| - 0.1 11.9 0.1 8.6 5.6 0.0 2.7 3 0 0 3 3 3 0 DnaB-like helicase C terminal domain Roc PF08477.13 gi|282163192|ref|YP_003355577.1| - 0.11 12.8 1.3 9.6 6.5 0.1 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|282163192|ref|YP_003355577.1| - 0.12 11.9 3.6 12 5.5 0.1 3.4 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain KAP_NTPase PF07693.14 gi|282163192|ref|YP_003355577.1| - 0.14 11.4 0.0 7.2 5.8 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain AAA_15 PF13175.6 gi|282163192|ref|YP_003355577.1| - 0.14 11.8 0.5 29 4.2 0.2 3.0 3 0 0 3 3 3 0 AAA ATPase domain SRPRB PF09439.10 gi|282163192|ref|YP_003355577.1| - 0.18 11.2 0.1 17 4.8 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_24 PF13479.6 gi|282163192|ref|YP_003355577.1| - 0.24 11.1 1.0 14 5.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|282163192|ref|YP_003355577.1| - 0.26 10.6 3.6 7.1 5.9 0.1 3.1 3 0 0 3 3 3 0 KaiC zf-IS66 PF13005.7 gi|282163192|ref|YP_003355577.1| - 0.32 11.4 0.1 0.32 11.4 0.1 1.8 2 0 0 2 2 1 0 zinc-finger binding domain of transposase IS66 Pox_A32 PF04665.12 gi|282163192|ref|YP_003355577.1| - 0.4 10.1 1.6 1.4 8.3 0.1 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein NACHT PF05729.12 gi|282163192|ref|YP_003355577.1| - 0.41 10.5 2.2 4.5 7.1 0.1 2.8 3 0 0 3 3 2 0 NACHT domain Anti-TRAP PF15777.5 gi|282163192|ref|YP_003355577.1| - 2.5 8.1 4.3 4.7 7.2 3.7 1.7 2 0 0 2 2 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Complex1_49kDa PF00346.19 gi|282163193|ref|YP_003355578.1| - 4.7e-63 212.8 0.1 1.3e-48 165.5 0.1 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|282163193|ref|YP_003355578.1| - 5.2e-11 42.1 0.9 3.9e-10 39.2 0.1 2.6 3 0 0 3 3 3 1 Nickel-dependent hydrogenase Hydrolase_4 PF12146.8 gi|282163194|ref|YP_003355579.1| - 1.7e-24 86.5 0.0 4.3e-20 72.0 0.0 2.0 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|282163194|ref|YP_003355579.1| - 9.4e-13 48.4 0.0 4.6e-10 39.6 0.4 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|282163194|ref|YP_003355579.1| - 3.7e-10 40.8 0.0 5.1e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF1749 PF08538.10 gi|282163194|ref|YP_003355579.1| - 1.4e-05 24.3 0.0 1.8e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1749) Abhydrolase_2 PF02230.16 gi|282163194|ref|YP_003355579.1| - 0.00031 20.6 0.0 0.01 15.6 0.0 2.4 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Ser_hydrolase PF06821.13 gi|282163194|ref|YP_003355579.1| - 0.006 16.4 0.0 0.19 11.6 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase Lipase_3 PF01764.25 gi|282163194|ref|YP_003355579.1| - 0.029 14.2 0.0 0.06 13.2 0.0 1.5 1 0 0 1 1 1 0 Lipase (class 3) Peptidase_S15 PF02129.18 gi|282163194|ref|YP_003355579.1| - 0.037 13.6 0.0 0.051 13.2 0.0 1.2 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_5 PF12695.7 gi|282163194|ref|YP_003355579.1| - 0.052 13.3 0.0 0.13 12.1 0.0 1.6 2 0 0 2 2 2 0 Alpha/beta hydrolase family DLH PF01738.18 gi|282163194|ref|YP_003355579.1| - 0.06 12.9 0.0 0.43 10.1 0.0 2.0 2 0 0 2 2 2 0 Dienelactone hydrolase family DUF2974 PF11187.8 gi|282163194|ref|YP_003355579.1| - 0.081 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Peptidase_S9 PF00326.21 gi|282163194|ref|YP_003355579.1| - 0.17 11.3 0.0 0.31 10.5 0.0 1.4 1 0 0 1 1 1 0 Prolyl oligopeptidase family Nitro_FeMo-Co PF02579.17 gi|282163195|ref|YP_003355580.1| - 1.9e-17 63.3 0.1 2.2e-17 63.2 0.1 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Rubredoxin_C PF18267.1 gi|282163195|ref|YP_003355580.1| - 0.022 14.7 0.0 0.051 13.5 0.0 1.6 2 0 0 2 2 2 0 Rubredoxin NAD+ reductase C-terminal domain CbiA PF01656.23 gi|282163196|ref|YP_003355581.1| - 5.3e-22 78.2 0.0 7.7e-22 77.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|282163196|ref|YP_003355581.1| - 1.5e-14 54.1 0.8 4e-11 42.9 0.1 2.7 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|282163196|ref|YP_003355581.1| - 8.9e-10 38.0 18.0 4.6e-07 29.4 1.7 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain AAA_31 PF13614.6 gi|282163196|ref|YP_003355581.1| - 2e-09 37.6 0.1 4.3e-06 26.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.18 gi|282163196|ref|YP_003355581.1| - 1.1e-08 34.9 0.1 2.7e-05 23.7 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|282163196|ref|YP_003355581.1| - 1.4e-06 27.8 0.0 2.1e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ Fer4_16 PF13484.6 gi|282163196|ref|YP_003355581.1| - 7.8e-06 26.7 14.5 0.013 16.4 5.7 3.2 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|282163196|ref|YP_003355581.1| - 9.3e-06 25.7 7.0 9.3e-06 25.7 7.0 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282163196|ref|YP_003355581.1| - 1.9e-05 24.5 19.2 0.00094 19.2 3.5 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282163196|ref|YP_003355581.1| - 3e-05 24.1 5.1 3e-05 24.1 5.1 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|282163196|ref|YP_003355581.1| - 0.00014 21.2 1.2 0.00023 20.4 1.2 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|282163196|ref|YP_003355581.1| - 0.00055 19.6 0.1 0.00094 18.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain Fer4_7 PF12838.7 gi|282163196|ref|YP_003355581.1| - 0.0019 18.8 14.9 0.002 18.7 10.0 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282163196|ref|YP_003355581.1| - 0.0059 16.6 2.4 0.0059 16.6 2.4 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|282163196|ref|YP_003355581.1| - 0.062 14.0 4.8 0.79 10.5 1.1 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain VirC1 PF07015.11 gi|282163196|ref|YP_003355581.1| - 0.14 11.5 0.2 0.21 10.8 0.2 1.3 1 0 0 1 1 1 0 VirC1 protein Fer4_10 PF13237.6 gi|282163196|ref|YP_003355581.1| - 0.18 12.0 18.2 0.097 12.8 12.1 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain PhoH PF02562.16 gi|282163196|ref|YP_003355581.1| - 0.48 9.8 1.3 0.79 9.1 1.3 1.3 1 0 0 1 1 1 0 PhoH-like protein Fer4_4 PF12800.7 gi|282163196|ref|YP_003355581.1| - 0.8 10.4 19.6 0.48 11.1 4.2 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282163196|ref|YP_003355581.1| - 1.5 9.3 13.8 3 8.4 0.8 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282163196|ref|YP_003355581.1| - 8 7.1 18.6 0.75 10.4 2.5 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282163196|ref|YP_003355581.1| - 9.1 6.9 9.6 9.5 6.9 1.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CbiA PF01656.23 gi|282163197|ref|YP_003355582.1| - 5.7e-17 62.0 0.0 7.2e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.27 gi|282163197|ref|YP_003355582.1| - 5.4e-13 48.2 18.4 2.1e-06 27.3 7.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282163197|ref|YP_003355582.1| - 5.2e-10 39.0 18.1 5.2e-05 23.1 6.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain ParA PF10609.9 gi|282163197|ref|YP_003355582.1| - 2.8e-08 33.5 0.0 0.0004 19.9 0.0 2.9 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_2 PF12797.7 gi|282163197|ref|YP_003355582.1| - 9.2e-08 31.7 16.8 0.00094 19.1 6.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282163197|ref|YP_003355582.1| - 2.4e-07 31.2 15.5 6.6e-07 29.8 15.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282163197|ref|YP_003355582.1| - 1.8e-06 28.0 10.9 4.8e-06 26.6 10.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282163197|ref|YP_003355582.1| - 6.9e-06 26.1 13.4 1.6e-05 25.0 13.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|282163197|ref|YP_003355582.1| - 7.6e-06 26.0 0.5 0.06 13.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_10 PF13237.6 gi|282163197|ref|YP_003355582.1| - 1.3e-05 25.2 26.0 0.00053 20.0 14.4 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282163197|ref|YP_003355582.1| - 6.4e-05 23.8 12.8 0.0064 17.4 3.9 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain GTP_EFTU PF00009.27 gi|282163197|ref|YP_003355582.1| - 0.00051 19.6 0.0 0.0063 16.1 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Fer4_4 PF12800.7 gi|282163197|ref|YP_003355582.1| - 0.0021 18.4 16.9 0.032 14.8 2.2 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain ArsA_ATPase PF02374.15 gi|282163197|ref|YP_003355582.1| - 0.0073 15.5 1.0 0.011 14.9 1.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|282163197|ref|YP_003355582.1| - 0.012 15.5 0.2 0.11 12.2 0.0 2.3 2 1 0 2 2 2 0 AAA domain Fer4_15 PF13459.6 gi|282163197|ref|YP_003355582.1| - 0.012 16.3 9.0 0.12 13.1 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain RsgA_GTPase PF03193.16 gi|282163197|ref|YP_003355582.1| - 0.025 14.5 0.1 4.6 7.1 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase Fer4_22 PF17179.4 gi|282163197|ref|YP_003355582.1| - 0.035 15.0 7.4 0.61 11.0 0.2 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain CBP_BcsQ PF06564.12 gi|282163197|ref|YP_003355582.1| - 0.045 13.2 0.0 1.9 7.9 0.0 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ AAA_22 PF13401.6 gi|282163197|ref|YP_003355582.1| - 0.08 13.2 0.4 0.84 9.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|282163197|ref|YP_003355582.1| - 0.082 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|282163197|ref|YP_003355582.1| - 0.086 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_16 PF13191.6 gi|282163197|ref|YP_003355582.1| - 0.097 13.1 0.1 1.5 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|282163197|ref|YP_003355582.1| - 0.16 11.7 2.4 5.2 6.7 2.5 2.6 2 1 1 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|282163197|ref|YP_003355582.1| - 0.23 11.0 0.2 0.43 10.1 0.2 1.4 1 0 0 1 1 1 0 AAA domain Fer4_8 PF13183.6 gi|282163197|ref|YP_003355582.1| - 0.37 11.3 15.7 1.9 9.0 3.1 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282163197|ref|YP_003355582.1| - 2.5 8.7 17.2 1.1 9.8 1.7 2.8 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282163197|ref|YP_003355582.1| - 3 8.5 17.3 3.2 8.3 5.0 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|282163197|ref|YP_003355582.1| - 3.5 8.8 21.8 9.2 7.5 4.8 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain Nitro_FeMo-Co PF02579.17 gi|282163198|ref|YP_003355583.1| - 4.9e-20 71.7 0.0 5.5e-20 71.5 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor zf-dskA_traR PF01258.17 gi|282163199|ref|YP_003355584.1| - 2e-06 27.6 1.4 2.4e-06 27.4 1.4 1.2 1 1 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger zf-ACC PF17848.1 gi|282163199|ref|YP_003355584.1| - 0.0026 17.8 0.3 0.0035 17.4 0.3 1.2 1 0 0 1 1 1 1 Acetyl-coA carboxylase zinc finger domain zf_UBZ PF18439.1 gi|282163199|ref|YP_003355584.1| - 0.013 15.0 0.1 0.018 14.6 0.1 1.3 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|282163199|ref|YP_003355584.1| - 0.016 14.6 0.1 0.022 14.2 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|282163199|ref|YP_003355584.1| - 0.019 14.8 1.6 0.033 14.0 1.6 1.4 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger OrfB_Zn_ribbon PF07282.11 gi|282163199|ref|YP_003355584.1| - 0.027 14.4 0.0 0.027 14.4 0.0 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain YhfH PF14149.6 gi|282163199|ref|YP_003355584.1| - 0.03 14.3 0.2 0.038 14.0 0.2 1.2 1 0 0 1 1 1 0 YhfH-like protein DUF983 PF06170.12 gi|282163199|ref|YP_003355584.1| - 0.19 12.2 0.1 0.21 12.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF983) Nitro_FeMo-Co PF02579.17 gi|282163200|ref|YP_003355585.1| - 2.9e-18 66.0 0.0 3.3e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF5320 PF17253.2 gi|282163201|ref|YP_003355586.1| - 5.4e-05 24.2 20.6 0.00028 21.9 20.6 1.8 1 1 0 1 1 1 1 Family of unknown function (DUF5320) DUF134 PF02001.16 gi|282163202|ref|YP_003355587.1| - 4.5e-22 78.4 0.1 5.8e-22 78.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|282163202|ref|YP_003355587.1| - 6.6e-08 32.1 0.1 1e-07 31.5 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 gi|282163202|ref|YP_003355587.1| - 0.00012 22.1 0.1 0.00015 21.7 0.1 1.1 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.16 gi|282163202|ref|YP_003355587.1| - 0.00015 21.2 0.0 0.00023 20.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|282163202|ref|YP_003355587.1| - 0.00025 20.9 0.1 0.00036 20.4 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_10 PF04967.12 gi|282163202|ref|YP_003355587.1| - 0.00068 19.4 0.1 0.0012 18.6 0.1 1.5 1 1 0 1 1 1 1 HTH DNA binding domain HTH_23 PF13384.6 gi|282163202|ref|YP_003355587.1| - 0.0025 17.6 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|282163202|ref|YP_003355587.1| - 0.039 13.9 0.0 0.054 13.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain I-EGF_1 PF18372.1 gi|282163202|ref|YP_003355587.1| - 5.4 7.2 9.0 8.9 6.5 0.6 2.7 2 0 0 2 2 2 0 Integrin beta epidermal growth factor like domain 1 Lactamase_B PF00753.27 gi|282163204|ref|YP_003355589.1| - 5.5e-12 46.1 0.1 8.9e-12 45.4 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|282163204|ref|YP_003355589.1| - 6.5e-08 32.3 0.0 9.1e-08 31.8 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|282163204|ref|YP_003355589.1| - 0.0057 16.6 0.0 0.0084 16.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HATPase_c PF02518.26 gi|282163205|ref|YP_003355590.1| - 2.2e-21 76.4 0.0 4.3e-21 75.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|282163205|ref|YP_003355590.1| - 2.8e-15 56.3 0.0 1.4e-14 54.0 0.0 2.2 2 1 1 3 3 3 1 PAS fold PAS_9 PF13426.7 gi|282163205|ref|YP_003355590.1| - 9.6e-14 51.5 0.0 2.4e-13 50.2 0.0 1.7 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|282163205|ref|YP_003355590.1| - 3.5e-09 36.9 0.0 6.7e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|282163205|ref|YP_003355590.1| - 1.9e-07 31.0 0.0 4.8e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|282163205|ref|YP_003355590.1| - 1e-05 25.5 0.0 1.8e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|282163205|ref|YP_003355590.1| - 0.00014 22.0 0.0 0.00066 19.8 0.0 2.0 1 1 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|282163205|ref|YP_003355590.1| - 0.012 15.9 0.0 0.043 14.1 0.0 1.9 1 1 0 1 1 1 0 PAS fold CutC PF03932.14 gi|282163205|ref|YP_003355590.1| - 0.041 13.4 0.0 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 CutC family DUF3488 PF11992.8 gi|282163205|ref|YP_003355590.1| - 0.3 10.0 4.1 0.49 9.3 4.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) DUF2142 PF09913.9 gi|282163205|ref|YP_003355590.1| - 0.89 8.3 7.6 2.1 7.1 7.6 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2142) DUF4118 PF13493.6 gi|282163205|ref|YP_003355590.1| - 2.9 7.8 13.7 20 5.1 13.7 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4118) HATPase_c PF02518.26 gi|282163206|ref|YP_003355591.1| - 1.7e-20 73.6 0.1 6.5e-20 71.7 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|282163206|ref|YP_003355591.1| - 7.4e-05 22.6 0.0 0.00016 21.5 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|282163206|ref|YP_003355591.1| - 0.00072 19.5 0.0 0.0014 18.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|282163206|ref|YP_003355591.1| - 0.013 15.3 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YbaB_DNA_bd PF02575.16 gi|282163207|ref|YP_003355592.1| - 0.13 12.5 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 YbaB/EbfC DNA-binding family DUF202 PF02656.15 gi|282163208|ref|YP_003355593.1| - 6.5e-15 55.3 6.4 6.5e-15 55.3 6.4 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF202) MtrE PF04206.12 gi|282163209|ref|YP_003355594.1| - 8.6e-130 431.9 10.4 9.7e-130 431.7 10.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E DUF2627 PF11118.8 gi|282163209|ref|YP_003355594.1| - 7 7.3 7.4 1.1 9.9 0.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2627) MtrD PF04207.12 gi|282163210|ref|YP_003355595.1| - 1.7e-74 250.2 32.6 2.8e-72 242.9 32.6 2.0 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D DHHC PF01529.20 gi|282163210|ref|YP_003355595.1| - 4.5 7.4 7.1 1.1 9.4 0.7 2.4 2 1 1 3 3 3 0 DHHC palmitoyltransferase MtrC PF04211.13 gi|282163211|ref|YP_003355596.1| - 7.9e-86 287.4 22.5 9.3e-86 287.2 22.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C Phage_holin_2_1 PF04971.12 gi|282163211|ref|YP_003355596.1| - 0.071 13.1 0.5 0.071 13.1 0.5 3.1 3 1 0 3 3 3 0 Bacteriophage P21 holin S MtrB PF05440.12 gi|282163212|ref|YP_003355597.1| - 9.1e-37 125.4 0.0 1e-36 125.2 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrF PF09472.10 gi|282163212|ref|YP_003355597.1| - 0.031 13.7 0.3 0.06 12.8 0.2 1.5 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.14 gi|282163213|ref|YP_003355598.1| - 1.4e-81 272.2 0.5 1.8e-81 271.9 0.5 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|282163213|ref|YP_003355598.1| - 0.39 10.2 2.2 1.9 8.0 2.2 2.1 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrF PF09472.10 gi|282163214|ref|YP_003355599.1| - 7.6e-20 70.1 0.1 8.4e-20 69.9 0.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrG PF04210.13 gi|282163215|ref|YP_003355600.1| - 8.6e-28 96.0 0.1 9.6e-28 95.8 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF3042 PF11240.8 gi|282163215|ref|YP_003355600.1| - 0.16 12.0 0.5 15 5.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) MtrH PF02007.18 gi|282163216|ref|YP_003355601.1| - 5e-118 393.6 0.6 5.8e-118 393.4 0.6 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit Na_H_Exchanger PF00999.21 gi|282163217|ref|YP_003355602.1| - 7.3e-58 196.2 46.7 4.4e-34 117.9 23.6 2.0 2 0 0 2 2 2 2 Sodium/hydrogen exchanger family TrkH PF02386.16 gi|282163218|ref|YP_003355603.1| - 2.4e-66 224.2 24.4 1.2e-65 221.9 24.4 1.9 1 1 0 1 1 1 1 Cation transport protein TrkA_N PF02254.18 gi|282163219|ref|YP_003355604.1| - 3.6e-23 82.0 3.4 5.9e-23 81.3 3.4 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|282163219|ref|YP_003355604.1| - 1.5e-15 56.7 0.6 4.4e-15 55.2 0.6 1.8 1 0 0 1 1 1 1 TrkA-C domain Sacchrp_dh_NADP PF03435.18 gi|282163219|ref|YP_003355604.1| - 7.3e-06 26.3 1.1 1.2e-05 25.6 1.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|282163219|ref|YP_003355604.1| - 1e-05 25.8 0.3 1.6e-05 25.1 0.3 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.6 gi|282163219|ref|YP_003355604.1| - 4.1e-05 23.5 1.8 5.7e-05 23.1 1.8 1.3 1 1 0 1 1 1 1 NAD(P)H-binding F420_oxidored PF03807.17 gi|282163219|ref|YP_003355604.1| - 5.8e-05 23.6 1.9 7.5e-05 23.2 0.8 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|282163219|ref|YP_003355604.1| - 0.00032 21.1 0.7 0.00052 20.4 0.7 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|282163219|ref|YP_003355604.1| - 0.0017 18.0 0.7 0.0031 17.1 0.7 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|282163219|ref|YP_003355604.1| - 0.0018 17.6 0.3 0.0027 17.1 0.3 1.5 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SSB PF00436.25 gi|282163219|ref|YP_003355604.1| - 0.002 18.2 0.1 0.0057 16.7 0.1 1.7 2 0 0 2 2 2 1 Single-strand binding protein family Gp_dh_N PF00044.24 gi|282163219|ref|YP_003355604.1| - 0.0042 17.4 1.4 0.0083 16.5 0.9 1.8 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain adh_short PF00106.25 gi|282163219|ref|YP_003355604.1| - 0.0046 16.4 0.3 0.0067 15.9 0.3 1.3 1 0 0 1 1 1 1 short chain dehydrogenase 3HCDH_N PF02737.18 gi|282163219|ref|YP_003355604.1| - 0.0063 16.4 1.1 0.015 15.2 1.1 1.6 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|282163219|ref|YP_003355604.1| - 0.0087 16.6 0.0 0.012 16.1 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain Shikimate_DH PF01488.20 gi|282163219|ref|YP_003355604.1| - 0.011 15.8 2.7 0.012 15.6 0.8 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase PglD_N PF17836.1 gi|282163219|ref|YP_003355604.1| - 0.012 16.3 1.2 0.042 14.5 1.2 2.0 1 0 0 1 1 1 0 PglD N-terminal domain Epimerase PF01370.21 gi|282163219|ref|YP_003355604.1| - 0.043 13.3 0.3 0.059 12.8 0.3 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_Gly3P_dh_N PF01210.23 gi|282163219|ref|YP_003355604.1| - 0.058 13.4 0.1 0.088 12.8 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|282163219|ref|YP_003355604.1| - 0.089 12.4 0.7 0.17 11.6 0.6 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF2114 PF09887.9 gi|282163220|ref|YP_003355605.1| - 1.6e-225 748.7 0.3 1.9e-225 748.5 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) DUF1894 PF08979.11 gi|282163221|ref|YP_003355606.1| - 8.7e-34 115.8 0.0 1.1e-33 115.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF2098 PF09871.9 gi|282163223|ref|YP_003355608.1| - 1.8e-28 98.7 3.7 2e-28 98.5 3.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) TraF_2 PF13729.6 gi|282163223|ref|YP_003355608.1| - 0.069 12.5 0.2 0.14 11.5 0.0 1.5 1 1 0 1 1 1 0 F plasmid transfer operon, TraF, protein YcaO PF02624.16 gi|282163224|ref|YP_003355609.1| - 4.8e-89 298.8 0.0 5.8e-89 298.6 0.0 1.1 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding TfuA PF07812.12 gi|282163225|ref|YP_003355610.1| - 4.8e-47 158.6 0.1 4.5e-46 155.5 0.1 2.5 3 1 1 4 4 4 1 TfuA-like protein PDDEXK_3 PF13366.6 gi|282163226|ref|YP_003355611.1| - 5.1e-41 139.7 0.3 5.9e-41 139.5 0.3 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Tox-REase-7 PF15649.6 gi|282163226|ref|YP_003355611.1| - 0.019 15.2 0.2 2.7 8.4 0.0 2.2 2 0 0 2 2 2 0 Restriction endonuclease fold toxin 7 Defensin_1 PF00323.19 gi|282163227|ref|YP_003355612.1| - 0.14 12.7 0.3 0.33 11.6 0.1 1.7 2 0 0 2 2 2 0 Mammalian defensin Lactonase PF10282.9 gi|282163228|ref|YP_003355613.1| - 5.8e-07 29.1 0.8 8.9e-05 21.9 0.1 2.9 2 2 0 2 2 2 2 Lactonase, 7-bladed beta-propeller SGL PF08450.12 gi|282163228|ref|YP_003355613.1| - 7e-06 25.8 0.3 1.1 8.8 0.0 3.5 2 1 0 3 3 3 3 SMP-30/Gluconolactonase/LRE-like region PD40 PF07676.12 gi|282163228|ref|YP_003355613.1| - 2.6e-05 24.0 1.3 10 6.2 0.1 5.4 5 0 0 5 5 5 2 WD40-like Beta Propeller Repeat Cytochrom_D1 PF02239.16 gi|282163228|ref|YP_003355613.1| - 0.00065 18.3 0.2 0.019 13.5 0.1 2.6 2 1 1 3 3 3 1 Cytochrome D1 heme domain Trypan_PARP PF05887.11 gi|282163228|ref|YP_003355613.1| - 0.016 15.2 9.6 0.03 14.3 9.6 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF4340 PF14238.6 gi|282163228|ref|YP_003355613.1| - 3.6 7.6 5.7 67 3.4 0.0 3.7 4 1 1 5 5 5 0 Domain of unknown function (DUF4340) MCR_D PF02505.14 gi|282163229|ref|YP_003355614.1| - 9.7e-51 171.4 0.0 1.1e-50 171.2 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D FMN_red PF03358.15 gi|282163230|ref|YP_003355615.1| - 6.2e-10 39.0 0.0 8.4e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 NADPH-dependent FMN reductase TetR_N PF00440.23 gi|282163231|ref|YP_003355616.1| - 2e-17 62.7 0.4 2e-17 62.7 0.4 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|282163231|ref|YP_003355616.1| - 0.00044 20.4 0.1 0.0011 19.1 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase TetR_C_24 PF17932.1 gi|282163231|ref|YP_003355616.1| - 0.0024 18.1 0.0 0.064 13.5 0.0 2.5 1 1 2 3 3 3 1 Tetracyclin repressor-like, C-terminal domain Inhibitor_I69 PF13734.6 gi|282163231|ref|YP_003355616.1| - 0.0029 18.0 0.0 0.042 14.3 0.0 2.3 1 1 1 2 2 2 1 Spi protease inhibitor TetR_C_29 PF17938.1 gi|282163231|ref|YP_003355616.1| - 0.005 16.9 0.1 0.047 13.8 0.0 2.3 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_25 PF17933.1 gi|282163231|ref|YP_003355616.1| - 0.008 16.5 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain ABC_tran PF00005.27 gi|282163232|ref|YP_003355617.1| - 2.8e-29 102.4 0.0 4.6e-29 101.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163232|ref|YP_003355617.1| - 9.3e-18 65.1 0.0 3.7e-10 40.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|282163232|ref|YP_003355617.1| - 5.6e-06 26.3 0.0 0.018 14.7 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|282163232|ref|YP_003355617.1| - 1.6e-05 24.4 0.0 0.17 11.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|282163232|ref|YP_003355617.1| - 0.0004 20.9 0.1 0.00074 20.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|282163232|ref|YP_003355617.1| - 0.003 17.7 0.0 0.12 12.6 0.0 2.5 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF4162 PF13732.6 gi|282163232|ref|YP_003355617.1| - 0.0037 17.9 0.0 0.0083 16.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|282163232|ref|YP_003355617.1| - 0.0043 16.8 0.0 0.012 15.4 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|282163232|ref|YP_003355617.1| - 0.02 14.9 0.1 3.2 7.8 0.1 2.6 2 1 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|282163232|ref|YP_003355617.1| - 0.051 12.2 0.0 0.59 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|282163232|ref|YP_003355617.1| - 0.092 12.9 0.0 1.9 8.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|282163232|ref|YP_003355617.1| - 0.12 12.1 0.0 6 6.6 0.0 2.6 2 1 1 3 3 3 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|282163232|ref|YP_003355617.1| - 0.12 12.1 0.1 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|282163232|ref|YP_003355617.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|282163232|ref|YP_003355617.1| - 0.16 12.4 0.1 0.58 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|282163232|ref|YP_003355617.1| - 0.17 12.2 0.1 0.74 10.1 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA PF00004.29 gi|282163232|ref|YP_003355617.1| - 0.18 12.2 0.1 2 8.8 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|282163232|ref|YP_003355617.1| - 0.24 11.3 0.0 0.47 10.3 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain DUF2284 PF10050.9 gi|282163233|ref|YP_003355618.1| - 2.4e-37 128.2 0.3 2.7e-37 128.0 0.3 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) ABC2_membrane PF01061.24 gi|282163234|ref|YP_003355619.1| - 6.7e-26 91.0 20.6 6.7e-26 91.0 20.6 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|282163234|ref|YP_003355619.1| - 1.2e-12 47.7 20.2 1.2e-12 47.7 20.2 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|282163235|ref|YP_003355620.1| - 3.6e-24 85.4 28.5 3.6e-24 85.4 28.5 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|282163235|ref|YP_003355620.1| - 7.4e-14 51.6 32.2 7.4e-14 51.6 32.2 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC_tran PF00005.27 gi|282163236|ref|YP_003355621.1| - 2.4e-27 96.1 0.0 4.2e-27 95.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Methyltransf_11 PF08241.12 gi|282163236|ref|YP_003355621.1| - 2.1e-24 86.0 0.0 6.8e-24 84.4 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282163236|ref|YP_003355621.1| - 9e-22 77.6 0.0 3e-21 75.9 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163236|ref|YP_003355621.1| - 1.7e-19 70.2 0.0 2.8e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282163236|ref|YP_003355621.1| - 9.8e-18 64.4 0.0 1.8e-17 63.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282163236|ref|YP_003355621.1| - 9.9e-16 58.3 0.0 3.2e-15 56.7 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain AAA_21 PF13304.6 gi|282163236|ref|YP_003355621.1| - 2.7e-15 56.9 0.0 8.7e-09 35.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Ubie_methyltran PF01209.18 gi|282163236|ref|YP_003355621.1| - 2e-14 53.5 0.0 6.3e-14 51.9 0.0 1.9 2 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|282163236|ref|YP_003355621.1| - 9.8e-12 44.9 0.0 1.7e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) AAA_15 PF13175.6 gi|282163236|ref|YP_003355621.1| - 3e-07 30.5 0.0 0.0033 17.2 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain RrnaAD PF00398.20 gi|282163236|ref|YP_003355621.1| - 1.2e-05 24.6 0.0 2.2e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|282163236|ref|YP_003355621.1| - 0.00014 21.5 0.0 0.00056 19.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|282163236|ref|YP_003355621.1| - 0.0002 20.7 0.0 0.00036 19.9 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain PCMT PF01135.19 gi|282163236|ref|YP_003355621.1| - 0.00024 20.9 0.0 0.00083 19.2 0.0 1.8 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF4162 PF13732.6 gi|282163236|ref|YP_003355621.1| - 0.00029 21.5 0.0 0.00058 20.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|282163236|ref|YP_003355621.1| - 0.00034 21.2 0.2 0.00054 20.5 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|282163236|ref|YP_003355621.1| - 0.0045 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|282163236|ref|YP_003355621.1| - 0.0073 15.8 0.0 2.1 7.7 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DREV PF05219.12 gi|282163236|ref|YP_003355621.1| - 0.0084 15.2 0.0 0.017 14.3 0.0 1.4 1 0 0 1 1 1 1 DREV methyltransferase MoCF_biosynth PF00994.24 gi|282163236|ref|YP_003355621.1| - 0.012 15.3 0.0 0.039 13.6 0.0 1.8 1 1 0 1 1 1 0 Probable molybdopterin binding domain MetW PF07021.12 gi|282163236|ref|YP_003355621.1| - 0.013 15.1 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|282163236|ref|YP_003355621.1| - 0.015 14.3 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) SbcCD_C PF13558.6 gi|282163236|ref|YP_003355621.1| - 0.063 13.5 0.0 0.38 11.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit tRNA_U5-meth_tr PF05958.11 gi|282163236|ref|YP_003355621.1| - 0.082 11.9 0.1 0.31 10.0 0.0 1.9 2 1 0 2 2 2 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_29 PF03141.16 gi|282163236|ref|YP_003355621.1| - 0.093 11.3 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_18 PF12847.7 gi|282163236|ref|YP_003355621.1| - 0.095 12.6 0.0 1.6 8.7 0.0 2.5 3 0 0 3 3 2 0 Methyltransferase domain CheR PF01739.18 gi|282163236|ref|YP_003355621.1| - 0.1 12.1 0.0 0.45 10.0 0.0 2.0 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain AAA_13 PF13166.6 gi|282163236|ref|YP_003355621.1| - 0.12 11.0 0.0 2.6 6.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Methyltransf_32 PF13679.6 gi|282163236|ref|YP_003355621.1| - 0.12 12.4 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Bmt2 PF11968.8 gi|282163236|ref|YP_003355621.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.3 1 0 0 1 1 1 0 25S rRNA (adenine(2142)-N(1))-methyltransferase, Bmt2 Methyltransf_8 PF05148.15 gi|282163236|ref|YP_003355621.1| - 0.17 11.7 0.0 0.34 10.7 0.0 1.5 1 0 0 1 1 1 0 Hypothetical methyltransferase ABC_tran PF00005.27 gi|282163237|ref|YP_003355622.1| - 2e-28 99.6 0.0 3.4e-28 98.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Methyltransf_11 PF08241.12 gi|282163237|ref|YP_003355622.1| - 2.4e-21 76.2 0.1 1.1e-20 74.0 0.0 2.2 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282163237|ref|YP_003355622.1| - 3.7e-18 66.0 0.1 1.1e-17 64.5 0.1 1.9 1 0 0 1 1 1 1 Methyltransferase domain AAA_21 PF13304.6 gi|282163237|ref|YP_003355622.1| - 3.2e-16 60.0 0.1 2e-09 37.7 0.0 2.5 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Methyltransf_31 PF13847.6 gi|282163237|ref|YP_003355622.1| - 6.7e-15 55.2 0.0 1.5e-14 54.0 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163237|ref|YP_003355622.1| - 1.4e-13 51.0 0.0 2.3e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282163237|ref|YP_003355622.1| - 1.3e-12 48.3 0.0 4.1e-12 46.7 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282163237|ref|YP_003355622.1| - 4.8e-11 42.4 0.0 9.5e-11 41.5 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family AAA_15 PF13175.6 gi|282163237|ref|YP_003355622.1| - 2.6e-07 30.7 0.0 0.0056 16.4 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain NodS PF05401.11 gi|282163237|ref|YP_003355622.1| - 6.7e-06 25.9 0.0 1.1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.20 gi|282163237|ref|YP_003355622.1| - 0.00018 20.7 0.0 0.00033 19.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|282163237|ref|YP_003355622.1| - 0.00026 20.7 0.0 0.00045 19.9 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DUF4162 PF13732.6 gi|282163237|ref|YP_003355622.1| - 0.00031 21.4 0.0 0.001 19.7 0.0 2.0 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) Methyltransf_8 PF05148.15 gi|282163237|ref|YP_003355622.1| - 0.00032 20.6 0.0 0.0011 18.8 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase AAA_23 PF13476.6 gi|282163237|ref|YP_003355622.1| - 0.00059 20.4 0.0 0.0012 19.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain MTS PF05175.14 gi|282163237|ref|YP_003355622.1| - 0.00089 18.8 0.0 0.0029 17.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain SMC_N PF02463.19 gi|282163237|ref|YP_003355622.1| - 0.002 17.6 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Methyltransf_9 PF08003.11 gi|282163237|ref|YP_003355622.1| - 0.0076 15.2 0.0 0.013 14.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) AAA_29 PF13555.6 gi|282163237|ref|YP_003355622.1| - 0.0087 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Methyltransf_29 PF03141.16 gi|282163237|ref|YP_003355622.1| - 0.015 13.9 0.0 0.022 13.3 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_32 PF13679.6 gi|282163237|ref|YP_003355622.1| - 0.019 14.9 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|282163237|ref|YP_003355622.1| - 0.055 12.4 0.0 0.45 9.4 0.0 2.2 2 1 0 2 2 2 0 tRNA (Uracil-5-)-methyltransferase AAA_13 PF13166.6 gi|282163237|ref|YP_003355622.1| - 0.061 12.0 0.0 2.3 6.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|282163237|ref|YP_003355622.1| - 0.061 13.6 0.0 0.39 11.0 0.0 2.4 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|282163237|ref|YP_003355622.1| - 0.061 13.5 0.0 0.2 11.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain Methyltransf_24 PF13578.6 gi|282163237|ref|YP_003355622.1| - 0.063 14.3 0.0 0.32 12.0 0.0 2.2 2 0 0 2 2 1 0 Methyltransferase domain DREV PF05219.12 gi|282163237|ref|YP_003355622.1| - 0.078 12.1 0.0 0.21 10.7 0.0 1.7 2 0 0 2 2 2 0 DREV methyltransferase CheR PF01739.18 gi|282163237|ref|YP_003355622.1| - 0.096 12.2 0.0 1.3 8.5 0.0 2.6 2 1 1 3 3 3 0 CheR methyltransferase, SAM binding domain PCMT PF01135.19 gi|282163237|ref|YP_003355622.1| - 0.1 12.3 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SF3b1 PF08920.10 gi|282163237|ref|YP_003355622.1| - 0.13 12.8 0.0 0.24 11.9 0.0 1.3 1 0 0 1 1 1 0 Splicing factor 3B subunit 1 Lum_binding PF00677.17 gi|282163237|ref|YP_003355622.1| - 0.14 12.1 0.0 0.49 10.4 0.0 1.9 2 0 0 2 2 2 0 Lumazine binding domain HTH_5 PF01022.20 gi|282163238|ref|YP_003355623.1| - 8.2e-13 48.0 0.0 1.3e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|282163238|ref|YP_003355623.1| - 1.3e-06 28.3 0.0 2.1e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|282163238|ref|YP_003355623.1| - 0.0032 17.6 0.4 0.0062 16.6 0.4 1.5 1 0 0 1 1 1 1 Zinc ribbon domain HTH_27 PF13463.6 gi|282163238|ref|YP_003355623.1| - 0.0035 17.8 0.0 0.0056 17.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain zinc_ribbon_4 PF13717.6 gi|282163238|ref|YP_003355623.1| - 0.0042 17.0 0.1 0.0086 16.0 0.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain HTH_45 PF14947.6 gi|282163238|ref|YP_003355623.1| - 0.012 15.6 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Anti-TRAP PF15777.5 gi|282163238|ref|YP_003355623.1| - 0.017 15.1 0.6 0.69 9.9 0.6 2.3 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF4364 PF14277.6 gi|282163238|ref|YP_003355623.1| - 0.026 14.3 0.1 0.036 13.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_24 PF13412.6 gi|282163238|ref|YP_003355623.1| - 0.029 13.9 0.0 0.065 12.8 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding COMP PF11598.8 gi|282163238|ref|YP_003355623.1| - 0.041 14.4 0.4 0.1 13.1 0.4 1.8 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein IBR PF01485.21 gi|282163238|ref|YP_003355623.1| - 0.06 13.6 0.4 0.28 11.5 0.0 2.0 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain zinc_ribbon_5 PF13719.6 gi|282163238|ref|YP_003355623.1| - 0.063 13.1 0.4 0.16 11.8 0.4 1.6 1 0 0 1 1 1 0 zinc-ribbon domain HxlR PF01638.17 gi|282163238|ref|YP_003355623.1| - 0.067 13.0 0.0 0.093 12.6 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_12 PF08461.10 gi|282163238|ref|YP_003355623.1| - 0.07 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF2513 PF10711.9 gi|282163238|ref|YP_003355623.1| - 0.091 13.1 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) PaaX PF07848.12 gi|282163238|ref|YP_003355623.1| - 0.13 12.5 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein Tmemb_55A PF09788.9 gi|282163238|ref|YP_003355623.1| - 0.14 11.2 0.1 0.15 11.1 0.1 1.1 1 0 0 1 1 1 0 Transmembrane protein 55A DUF1495 PF07381.11 gi|282163238|ref|YP_003355623.1| - 0.15 11.9 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Peptidase_M48 PF01435.18 gi|282163240|ref|YP_003355625.1| - 1.1e-40 139.5 0.0 1.4e-40 139.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|282163240|ref|YP_003355625.1| - 1.4e-05 24.4 0.0 2.2e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|282163240|ref|YP_003355625.1| - 0.036 13.9 0.0 0.053 13.4 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Phage_holin_3_6 PF07332.11 gi|282163240|ref|YP_003355625.1| - 0.32 11.0 9.0 0.49 10.4 4.0 2.3 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF1129 PF06570.11 gi|282163240|ref|YP_003355625.1| - 0.57 9.6 5.1 2 7.9 1.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) Na_Ca_ex PF01699.24 gi|282163241|ref|YP_003355626.1| - 2e-32 112.2 41.9 4.7e-18 65.6 20.0 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein PT PF04886.12 gi|282163242|ref|YP_003355627.1| - 2.3e-08 33.5 28.4 3.9e-06 26.3 16.6 5.6 4 2 1 5 5 5 2 PT repeat PRA-CH PF01502.18 gi|282163243|ref|YP_003355628.1| - 1.1e-35 121.3 1.2 1.4e-35 120.9 1.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase BBS2_Mid PF14783.6 gi|282163243|ref|YP_003355628.1| - 0.14 12.2 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, middle region T2SSE PF00437.20 gi|282163244|ref|YP_003355629.1| - 5.6e-14 51.8 0.2 1.2e-13 50.7 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein KH_1 PF00013.29 gi|282163244|ref|YP_003355629.1| - 7.6e-06 25.7 0.2 2.3e-05 24.1 0.2 1.8 1 0 0 1 1 1 1 KH domain PIN_4 PF13638.6 gi|282163244|ref|YP_003355629.1| - 9.2e-05 22.7 0.0 0.00084 19.6 0.0 2.3 2 0 0 2 2 2 1 PIN domain PIN_9 PF18477.1 gi|282163244|ref|YP_003355629.1| - 0.00038 20.8 2.1 0.018 15.4 0.3 3.2 2 1 0 2 2 2 1 PIN like domain AAA_16 PF13191.6 gi|282163244|ref|YP_003355629.1| - 0.00079 19.9 0.0 0.0015 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|282163244|ref|YP_003355629.1| - 0.001 19.6 0.0 0.053 14.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|282163244|ref|YP_003355629.1| - 0.0015 18.2 0.0 0.0045 16.7 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|282163244|ref|YP_003355629.1| - 0.0036 17.1 0.0 0.0078 16.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein KH_2 PF07650.17 gi|282163244|ref|YP_003355629.1| - 0.0065 16.3 2.0 0.018 14.8 2.0 1.8 1 0 0 1 1 1 1 KH domain AAA_18 PF13238.6 gi|282163244|ref|YP_003355629.1| - 0.019 15.5 0.0 0.049 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|282163244|ref|YP_003355629.1| - 0.023 14.3 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|282163244|ref|YP_003355629.1| - 0.027 14.7 0.0 0.084 13.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|282163244|ref|YP_003355629.1| - 0.033 14.1 0.0 0.13 12.2 0.0 2.0 1 0 0 1 1 1 0 NTPase AAA PF00004.29 gi|282163244|ref|YP_003355629.1| - 0.059 13.8 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|282163244|ref|YP_003355629.1| - 0.069 13.3 0.0 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|282163244|ref|YP_003355629.1| - 0.11 12.9 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|282163244|ref|YP_003355629.1| - 0.12 12.1 0.0 0.3 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|282163244|ref|YP_003355629.1| - 0.13 12.3 0.0 0.4 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|282163244|ref|YP_003355629.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Rad17 PF03215.15 gi|282163244|ref|YP_003355629.1| - 0.2 11.6 0.0 0.36 10.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Glyco_trans_1_4 PF13692.6 gi|282163245|ref|YP_003355630.1| - 0.1 13.0 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF378 PF04070.12 gi|282163246|ref|YP_003355631.1| - 1.4e-16 60.1 12.1 1.8e-16 59.8 12.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF378) PhoR PF11808.8 gi|282163246|ref|YP_003355631.1| - 0.056 13.9 6.5 0.24 11.8 6.5 1.8 1 1 0 1 1 1 0 Phosphate regulon sensor protein PhoR YlaC PF10777.9 gi|282163247|ref|YP_003355632.1| - 0.034 14.0 0.1 0.034 14.0 0.1 1.1 1 0 0 1 1 1 0 Inner membrane protein YlaC PAS_3 PF08447.12 gi|282163248|ref|YP_003355633.1| - 4.2e-34 116.7 0.5 6.9e-17 61.5 0.1 2.8 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|282163248|ref|YP_003355633.1| - 4.5e-16 59.4 0.0 1.5e-15 57.7 0.0 1.9 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|282163248|ref|YP_003355633.1| - 4.3e-15 55.8 0.0 3.3e-09 36.9 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|282163248|ref|YP_003355633.1| - 6.1e-15 55.2 0.1 1e-09 38.4 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|282163248|ref|YP_003355633.1| - 6.9e-11 42.4 0.0 3.4e-08 33.7 0.0 2.7 2 0 0 2 2 2 2 PAS fold GAF PF01590.26 gi|282163248|ref|YP_003355633.1| - 1.3e-08 35.5 0.0 3.1e-08 34.3 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.7 gi|282163248|ref|YP_003355633.1| - 1.1e-07 31.7 0.0 1.5e-05 24.9 0.0 2.7 2 0 0 2 2 2 1 PAS domain GAF_2 PF13185.6 gi|282163248|ref|YP_003355633.1| - 4.4e-06 27.0 0.0 1.4e-05 25.4 0.0 1.9 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|282163248|ref|YP_003355633.1| - 2.8e-05 24.5 0.0 5.3e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|282163248|ref|YP_003355633.1| - 0.00091 19.1 0.0 0.006 16.5 0.0 2.3 2 1 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 gi|282163248|ref|YP_003355633.1| - 0.0022 18.0 0.0 0.091 12.7 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|282163248|ref|YP_003355633.1| - 0.027 14.6 0.0 0.2 11.9 0.0 2.6 2 0 0 2 2 2 0 PAS fold PAS_11 PF14598.6 gi|282163248|ref|YP_003355633.1| - 0.14 12.3 0.0 21 5.3 0.0 2.4 2 0 0 2 2 2 0 PAS domain Abhydrolase_3 PF07859.13 gi|282163249|ref|YP_003355634.1| - 3.8e-66 222.9 0.1 5.1e-66 222.5 0.1 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Say1_Mug180 PF10340.9 gi|282163249|ref|YP_003355634.1| - 7.2e-06 25.1 0.0 1e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Steryl acetyl hydrolase Peptidase_S9 PF00326.21 gi|282163249|ref|YP_003355634.1| - 0.00018 21.1 0.1 0.00041 19.9 0.1 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase family AXE1 PF05448.12 gi|282163249|ref|YP_003355634.1| - 0.00098 17.9 0.1 0.46 9.1 0.0 2.2 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) COesterase PF00135.28 gi|282163249|ref|YP_003355634.1| - 0.021 13.7 0.6 0.83 8.4 0.1 2.0 2 0 0 2 2 2 0 Carboxylesterase family DUF2974 PF11187.8 gi|282163249|ref|YP_003355634.1| - 0.096 12.2 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) PAF-AH_p_II PF03403.13 gi|282163249|ref|YP_003355634.1| - 0.13 10.7 0.1 0.4 9.2 0.0 1.7 1 1 1 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II CxxCxxCC PF03692.15 gi|282163250|ref|YP_003355635.1| - 6.5e-11 42.8 5.7 1.2e-10 41.9 5.7 1.5 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3835 PF12927.7 gi|282163250|ref|YP_003355635.1| - 0.071 14.0 0.8 8.3 7.3 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3835) Ku PF02735.16 gi|282163251|ref|YP_003355636.1| - 1.1e-29 103.6 0.0 1.4e-29 103.3 0.0 1.1 1 0 0 1 1 1 1 Ku70/Ku80 beta-barrel domain DUF1361 PF07099.11 gi|282163252|ref|YP_003355637.1| - 0.1 12.6 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1361) PRCC PF10253.9 gi|282163252|ref|YP_003355637.1| - 0.85 10.4 4.4 1.2 9.9 4.4 1.3 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting SARG PF15385.6 gi|282163252|ref|YP_003355637.1| - 1.7 7.8 10.2 2.2 7.4 10.2 1.1 1 0 0 1 1 1 0 Specifically androgen-regulated gene protein GRP PF07172.11 gi|282163253|ref|YP_003355638.1| - 0.78 10.5 26.8 0.93 10.2 16.2 3.1 3 0 0 3 3 3 0 Glycine rich protein family YTV PF07639.11 gi|282163253|ref|YP_003355638.1| - 1.7 8.8 10.8 3 8.0 2.7 3.3 2 0 0 2 2 2 0 YTV RHH_1 PF01402.21 gi|282163254|ref|YP_003355639.1| - 8.9e-07 28.6 0.0 2.8e-06 27.0 0.0 1.9 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|282163254|ref|YP_003355639.1| - 0.011 15.7 0.1 0.024 14.6 0.1 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix domain DUF3181 PF11378.8 gi|282163254|ref|YP_003355639.1| - 0.074 13.4 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3181) B2-adapt-app_C PF09066.10 gi|282163254|ref|YP_003355639.1| - 0.093 12.8 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Beta2-adaptin appendage, C-terminal sub-domain Ammonium_transp PF00909.21 gi|282163255|ref|YP_003355640.1| - 2e-125 418.6 39.1 2.3e-125 418.4 39.1 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|282163256|ref|YP_003355641.1| - 5.7e-36 123.2 5.7 6.3e-36 123.1 5.7 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|282163256|ref|YP_003355641.1| - 0.0027 17.9 1.7 0.068 13.4 1.7 2.7 1 1 0 1 1 1 1 Cyclic-di-AMP receptor Ammonium_transp PF00909.21 gi|282163257|ref|YP_003355642.1| - 2.1e-126 421.8 41.5 2.4e-126 421.7 41.5 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family FHIPEP PF00771.20 gi|282163257|ref|YP_003355642.1| - 8.5 4.7 8.5 0.26 9.7 1.7 1.8 2 0 0 2 2 2 0 FHIPEP family P-II PF00543.22 gi|282163258|ref|YP_003355643.1| - 2e-34 118.3 3.6 2.2e-34 118.1 3.6 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF2067 PF09840.9 gi|282163258|ref|YP_003355643.1| - 0.03 13.9 0.2 0.059 12.9 0.1 1.6 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) CdAMP_rec PF06153.11 gi|282163258|ref|YP_003355643.1| - 0.065 13.4 2.0 4.1 7.6 0.4 2.9 1 1 1 2 2 2 0 Cyclic-di-AMP receptor CPBP PF02517.16 gi|282163259|ref|YP_003355644.1| - 2.1e-08 34.4 9.2 2.1e-08 34.4 9.2 3.1 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF4731 PF15875.5 gi|282163259|ref|YP_003355644.1| - 1.5 9.0 6.7 0.43 10.8 2.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4731) DUF2723 PF11028.8 gi|282163259|ref|YP_003355644.1| - 1.9 8.4 12.4 0.57 10.1 6.6 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2723) Saccharop_dh_N PF04455.12 gi|282163260|ref|YP_003355645.1| - 5.2e-38 129.5 0.0 1.1e-37 128.4 0.0 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|282163260|ref|YP_003355645.1| - 0.00043 20.0 0.3 0.011 15.5 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|282163260|ref|YP_003355645.1| - 0.02 14.1 0.1 0.14 11.4 0.0 2.1 2 0 0 2 2 2 0 Deoxyhypusine synthase Methyltransf_25 PF13649.6 gi|282163261|ref|YP_003355646.1| - 9.1e-23 80.8 0.1 1.3e-22 80.3 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282163261|ref|YP_003355646.1| - 9e-20 71.1 0.1 1.2e-19 70.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282163261|ref|YP_003355646.1| - 2.5e-19 69.6 0.0 3.1e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|282163261|ref|YP_003355646.1| - 4.7e-17 62.4 0.0 8.7e-17 61.5 0.0 1.3 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_12 PF08242.12 gi|282163261|ref|YP_003355646.1| - 8.4e-17 61.7 0.1 1.1e-16 61.4 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163261|ref|YP_003355646.1| - 5.1e-15 55.7 0.0 5.8e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|282163261|ref|YP_003355646.1| - 1.1e-10 41.4 0.0 1.5e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|282163261|ref|YP_003355646.1| - 3.4e-08 33.1 0.0 4.3e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|282163261|ref|YP_003355646.1| - 6.7e-08 32.2 0.1 9.4e-08 31.7 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|282163261|ref|YP_003355646.1| - 2.2e-07 30.5 0.0 2.5e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|282163261|ref|YP_003355646.1| - 1.6e-05 24.7 0.0 1.9e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_15 PF09445.10 gi|282163261|ref|YP_003355646.1| - 5.8e-05 22.7 0.1 8.3e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|282163261|ref|YP_003355646.1| - 0.001 18.6 0.0 0.0012 18.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|282163261|ref|YP_003355646.1| - 0.0073 16.3 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|282163261|ref|YP_003355646.1| - 0.021 13.7 0.0 0.028 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) MetW PF07021.12 gi|282163261|ref|YP_003355646.1| - 0.022 14.4 0.1 0.028 14.0 0.1 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 gi|282163261|ref|YP_003355646.1| - 0.044 13.7 0.0 0.065 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.13 gi|282163261|ref|YP_003355646.1| - 0.051 13.1 0.0 0.068 12.7 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_4 PF02390.17 gi|282163261|ref|YP_003355646.1| - 0.066 12.7 0.0 0.21 11.1 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase PCMT PF01135.19 gi|282163261|ref|YP_003355646.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF938 PF06080.12 gi|282163261|ref|YP_003355646.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Mur_ligase PF01225.25 gi|282163261|ref|YP_003355646.1| - 0.17 12.2 0.0 0.3 11.4 0.0 1.3 1 0 0 1 1 1 0 Mur ligase family, catalytic domain CDP-OH_P_transf PF01066.21 gi|282163262|ref|YP_003355647.1| - 2e-16 60.5 2.8 2e-16 60.5 2.8 2.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Borrelia_P13 PF05628.12 gi|282163262|ref|YP_003355647.1| - 0.085 12.8 0.1 0.085 12.8 0.1 1.6 2 0 0 2 2 2 0 Borrelia membrane protein P13 PEMT PF04191.13 gi|282163263|ref|YP_003355648.1| - 2e-07 31.3 2.5 2.6e-07 31.0 1.6 1.7 1 1 0 1 1 1 1 Phospholipid methyltransferase ICMT PF04140.14 gi|282163263|ref|YP_003355648.1| - 0.004 17.6 2.2 0.008 16.6 0.2 2.3 1 1 2 3 3 3 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family TMEM174 PF15029.6 gi|282163263|ref|YP_003355648.1| - 0.015 15.0 1.7 0.023 14.4 1.7 1.2 1 0 0 1 1 1 0 Transmembrane protein 174 Flavodoxin_5 PF12724.7 gi|282163264|ref|YP_003355649.1| - 1.7e-05 25.1 0.0 2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|282163264|ref|YP_003355649.1| - 0.0058 16.3 0.0 0.0077 15.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Torsin PF06309.11 gi|282163264|ref|YP_003355649.1| - 0.056 13.5 0.0 1.2 9.3 0.0 2.1 1 1 1 2 2 2 0 Torsin DUF4179 PF13786.6 gi|282163264|ref|YP_003355649.1| - 0.23 12.0 1.7 0.5 10.9 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) TetR_N PF00440.23 gi|282163265|ref|YP_003355650.1| - 6.1e-16 57.9 0.5 9.4e-16 57.3 0.5 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|282163265|ref|YP_003355650.1| - 0.0034 17.5 0.0 0.0081 16.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_28 PF13518.6 gi|282163265|ref|YP_003355650.1| - 0.069 13.3 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|282163265|ref|YP_003355650.1| - 0.12 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|282163265|ref|YP_003355650.1| - 0.17 11.8 0.0 0.46 10.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Radical_SAM PF04055.21 gi|282163266|ref|YP_003355651.1| - 5.4e-10 39.9 0.1 2.3e-09 37.9 0.1 1.9 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|282163266|ref|YP_003355651.1| - 6.7e-08 32.7 0.0 1.6e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|282163266|ref|YP_003355651.1| - 4.5e-06 27.0 0.0 2.4e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|282163266|ref|YP_003355651.1| - 0.038 14.5 0.0 0.087 13.4 0.0 1.6 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain TetR_N PF00440.23 gi|282163267|ref|YP_003355652.1| - 5.5e-18 64.5 0.4 9.8e-18 63.7 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|282163267|ref|YP_003355652.1| - 0.0068 16.6 0.0 0.015 15.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase Glyco_hydro_114 PF03537.13 gi|282163267|ref|YP_003355652.1| - 0.06 12.6 0.0 0.093 12.0 0.0 1.2 1 0 0 1 1 1 0 Glycoside-hydrolase family GH114 UPF0122 PF04297.14 gi|282163267|ref|YP_003355652.1| - 0.066 13.5 0.1 0.17 12.1 0.1 1.7 1 1 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF4468 PF14730.6 gi|282163268|ref|YP_003355653.1| - 0.028 14.7 0.3 1.5 9.2 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4468) with TBP-like fold HpuA PF16960.5 gi|282163269|ref|YP_003355654.1| - 0.012 14.8 0.6 0.021 14.0 0.6 1.3 1 0 0 1 1 1 0 Haemoglobin-haptoglobin utilisation, porphyrin transporter FMN_red PF03358.15 gi|282163270|ref|YP_003355655.1| - 5.8e-27 94.3 0.0 8.2e-27 93.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|282163270|ref|YP_003355655.1| - 6.3e-11 42.3 0.0 7.4e-11 42.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold KGG PF10685.9 gi|282163271|ref|YP_003355656.1| - 2.2e-09 37.3 15.6 0.00084 19.5 3.0 4.0 3 1 0 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282163271|ref|YP_003355656.1| - 2e-07 31.4 31.0 3.2e-05 24.3 15.4 1.7 1 1 1 2 2 2 2 Small hydrophilic plant seed protein SASP PF00269.20 gi|282163271|ref|YP_003355656.1| - 0.054 13.5 7.7 1.2 9.2 0.9 2.4 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type TUSC2 PF15000.6 gi|282163271|ref|YP_003355656.1| - 2.2 8.6 6.1 1.1 9.6 0.3 2.5 1 1 1 2 2 2 0 Tumour suppressor candidate 2 KMP11 PF03037.16 gi|282163271|ref|YP_003355656.1| - 3.3 8.6 7.2 13 6.7 0.9 2.1 1 1 1 2 2 2 0 Kinetoplastid membrane protein 11 PAS_3 PF08447.12 gi|282163272|ref|YP_003355657.1| - 1.6e-19 69.9 2.4 8.5e-11 42.0 0.2 2.7 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|282163272|ref|YP_003355657.1| - 6e-15 55.7 0.0 1.5e-14 54.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|282163272|ref|YP_003355657.1| - 2.5e-09 37.3 0.0 4.4e-07 30.1 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|282163272|ref|YP_003355657.1| - 8.3e-06 25.7 0.0 6.7e-05 22.8 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|282163272|ref|YP_003355657.1| - 1.4e-05 25.0 0.0 0.0025 17.8 0.0 2.6 2 1 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|282163272|ref|YP_003355657.1| - 3e-05 24.2 0.0 0.013 15.8 0.0 2.8 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|282163272|ref|YP_003355657.1| - 4.4e-05 23.4 0.0 0.00013 21.9 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain SIMPL PF04402.14 gi|282163272|ref|YP_003355657.1| - 0.019 15.4 0.1 0.048 14.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF541) HATPase_c_5 PF14501.6 gi|282163272|ref|YP_003355657.1| - 0.038 13.9 0.0 0.75 9.7 0.0 2.3 2 0 0 2 2 2 0 GHKL domain HATPase_c_3 PF13589.6 gi|282163272|ref|YP_003355657.1| - 0.087 12.6 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PhoU_div PF01865.16 gi|282163273|ref|YP_003355658.1| - 7.9e-38 129.9 6.4 8.9e-38 129.8 6.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 CDC73_N PF16050.5 gi|282163273|ref|YP_003355658.1| - 0.018 14.4 1.3 0.023 14.0 1.3 1.2 1 0 0 1 1 1 0 Paf1 complex subunit CDC73 N-terminal PhoU PF01895.19 gi|282163273|ref|YP_003355658.1| - 0.02 15.4 3.8 0.3 11.6 1.8 2.7 2 2 0 2 2 2 0 PhoU domain eIF3_N PF09440.10 gi|282163273|ref|YP_003355658.1| - 0.028 14.9 6.0 0.85 10.1 1.0 2.2 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain MatP PF06303.12 gi|282163273|ref|YP_003355658.1| - 0.038 14.5 1.3 0.12 13.0 0.1 2.4 2 1 1 3 3 3 0 MatP N-terminal domain Effector_1 PF04518.12 gi|282163273|ref|YP_003355658.1| - 0.046 12.8 0.4 0.055 12.6 0.4 1.2 1 0 0 1 1 1 0 Effector from type III secretion system VCH_CASS14 PF18315.1 gi|282163273|ref|YP_003355658.1| - 0.48 10.5 2.8 1.7 8.7 0.0 2.8 2 2 2 4 4 4 0 Integron cassette protein VCH_CASS1 chain eIF3_subunit PF08597.10 gi|282163273|ref|YP_003355658.1| - 0.63 9.9 4.0 0.82 9.5 4.0 1.1 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit eIF-1a PF01176.19 gi|282163275|ref|YP_003355660.1| - 4.5e-21 74.4 4.8 5.2e-21 74.2 4.8 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 gi|282163275|ref|YP_003355660.1| - 0.032 14.0 0.4 0.045 13.5 0.4 1.4 1 0 0 1 1 1 0 RsgA N-terminal domain CarS-like PF01864.17 gi|282163277|ref|YP_003355662.1| - 6.6e-45 153.2 4.0 7.4e-45 153.0 4.0 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|282163277|ref|YP_003355662.1| - 0.00018 21.4 1.6 0.00018 21.4 1.6 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family CDP-OH_P_transf PF01066.21 gi|282163279|ref|YP_003355664.1| - 3.6e-15 56.5 1.5 3.6e-15 56.5 1.5 2.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF1270 PF06900.11 gi|282163279|ref|YP_003355664.1| - 0.067 13.6 2.2 9.7 6.7 0.6 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1270) Macoilin PF09726.9 gi|282163279|ref|YP_003355664.1| - 0.083 11.4 1.5 0.13 10.9 1.5 1.2 1 0 0 1 1 1 0 Macoilin family YfhO PF09586.10 gi|282163279|ref|YP_003355664.1| - 0.35 9.0 7.2 7.7 4.6 7.2 2.0 1 1 0 1 1 1 0 Bacterial membrane protein YfhO Oxidored_q3 PF00499.20 gi|282163279|ref|YP_003355664.1| - 0.56 9.9 6.3 0.16 11.7 2.5 1.9 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PsbJ PF01788.17 gi|282163279|ref|YP_003355664.1| - 0.84 9.6 4.7 1.3 8.9 0.4 2.7 2 0 0 2 2 2 0 PsbJ Inhibitor_I42 PF09394.10 gi|282163280|ref|YP_003355665.1| - 2.2e-29 101.7 1.0 3e-29 101.3 1.0 1.2 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 Inhibitor_I71 PF12628.7 gi|282163280|ref|YP_003355665.1| - 0.00049 20.0 0.2 0.21 11.4 0.1 2.1 1 1 1 2 2 2 2 Falstatin, cysteine peptidase inhibitor Peptidase_MA_2 PF13485.6 gi|282163281|ref|YP_003355666.1| - 0.0032 17.2 0.0 0.0048 16.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase MA superfamily HTH_24 PF13412.6 gi|282163282|ref|YP_003355667.1| - 2.5e-15 55.7 0.0 4.3e-15 55.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|282163282|ref|YP_003355667.1| - 7.4e-13 48.1 0.0 1.1e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|282163282|ref|YP_003355667.1| - 0.00018 21.4 0.2 0.00067 19.6 0.0 1.8 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_Crp_2 PF13545.6 gi|282163282|ref|YP_003355667.1| - 0.00023 21.1 0.0 0.00042 20.2 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|282163282|ref|YP_003355667.1| - 0.00062 19.6 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|282163282|ref|YP_003355667.1| - 0.00092 19.1 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|282163282|ref|YP_003355667.1| - 0.0011 18.4 0.0 0.0019 17.7 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|282163282|ref|YP_003355667.1| - 0.0013 18.5 0.0 0.0025 17.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|282163282|ref|YP_003355667.1| - 0.0046 16.9 0.0 0.0083 16.0 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|282163282|ref|YP_003355667.1| - 0.0059 16.9 0.1 0.0097 16.2 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|282163282|ref|YP_003355667.1| - 0.024 14.3 0.0 0.064 12.9 0.0 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|282163282|ref|YP_003355667.1| - 0.034 14.3 0.0 0.061 13.5 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|282163282|ref|YP_003355667.1| - 0.039 13.8 0.0 0.068 13.0 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|282163282|ref|YP_003355667.1| - 0.048 13.7 0.0 0.078 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2083 PF09856.9 gi|282163282|ref|YP_003355667.1| - 0.062 13.2 0.2 0.095 12.5 0.2 1.3 1 0 0 1 1 1 0 Predicted transcriptional regulator (DUF2083) HTH_36 PF13730.6 gi|282163282|ref|YP_003355667.1| - 0.079 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_39 PF14090.6 gi|282163282|ref|YP_003355667.1| - 0.15 11.8 0.0 0.52 10.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|282163282|ref|YP_003355667.1| - 0.16 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.19 gi|282163282|ref|YP_003355667.1| - 0.17 11.8 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|282163282|ref|YP_003355667.1| - 0.22 11.7 0.0 0.35 11.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DNA_ligase_A_M PF01068.21 gi|282163283|ref|YP_003355668.1| - 9.9e-57 191.9 0.0 2.1e-56 190.8 0.0 1.5 2 0 0 2 2 2 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|282163283|ref|YP_003355668.1| - 2.1e-33 116.1 0.6 1.5e-32 113.3 0.0 2.5 2 2 1 3 3 3 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|282163283|ref|YP_003355668.1| - 3.7e-18 65.9 0.0 8e-18 64.9 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.6 gi|282163283|ref|YP_003355668.1| - 0.00027 20.9 0.0 0.00057 19.9 0.0 1.6 1 0 0 1 1 1 1 DNA ligase OB-like domain Arginosuc_synth PF00764.19 gi|282163283|ref|YP_003355668.1| - 0.053 12.8 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Arginosuccinate synthase SelR PF01641.18 gi|282163284|ref|YP_003355669.1| - 3.8e-51 172.2 0.0 4.5e-51 172.0 0.0 1.1 1 0 0 1 1 1 1 SelR domain TPR_12 PF13424.6 gi|282163285|ref|YP_003355670.1| - 2.8e-08 33.9 1.1 6.3e-08 32.8 0.0 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282163285|ref|YP_003355670.1| - 8.6e-08 31.7 0.5 0.00018 21.3 0.1 3.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282163285|ref|YP_003355670.1| - 1.6e-05 24.6 0.0 0.00053 19.8 0.0 3.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282163285|ref|YP_003355670.1| - 3.4e-05 23.5 0.1 0.00017 21.2 0.1 2.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282163285|ref|YP_003355670.1| - 0.00012 21.8 0.0 0.00062 19.6 0.0 2.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282163285|ref|YP_003355670.1| - 0.00023 21.1 0.3 0.0013 18.8 0.1 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282163285|ref|YP_003355670.1| - 0.016 15.7 0.2 0.12 12.9 0.0 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat PPR PF01535.20 gi|282163285|ref|YP_003355670.1| - 0.11 12.8 1.2 5.4 7.5 0.0 3.4 3 0 0 3 3 3 0 PPR repeat HrpF PF06266.12 gi|282163285|ref|YP_003355670.1| - 0.11 12.8 0.4 6.5 7.1 0.1 2.6 2 0 0 2 2 2 0 HrpF protein Usp PF00582.26 gi|282163286|ref|YP_003355671.1| - 1.5e-39 135.7 0.5 3.7e-18 66.4 0.1 3.0 2 1 0 2 2 2 2 Universal stress protein family OmpH PF03938.14 gi|282163286|ref|YP_003355671.1| - 0.064 13.6 0.0 0.9 9.9 0.0 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Fer4 PF00037.27 gi|282163287|ref|YP_003355672.1| - 8.4e-20 69.7 31.2 4.4e-09 35.8 1.4 5.2 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282163287|ref|YP_003355672.1| - 2.2e-17 63.0 48.0 2.3e-08 34.1 13.7 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282163287|ref|YP_003355672.1| - 4.4e-17 61.9 54.3 8.8e-09 35.4 13.3 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282163287|ref|YP_003355672.1| - 6.2e-17 61.9 23.9 7.9e-13 48.8 8.5 3.2 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282163287|ref|YP_003355672.1| - 4.2e-13 49.2 47.3 1.3e-07 31.6 10.3 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282163287|ref|YP_003355672.1| - 7.3e-13 48.0 36.5 1e-06 28.5 1.9 4.8 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|282163287|ref|YP_003355672.1| - 5e-11 43.4 26.4 0.00011 23.1 0.3 4.2 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|282163287|ref|YP_003355672.1| - 1.5e-10 40.5 32.9 1.9e-05 24.5 1.7 4.6 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282163287|ref|YP_003355672.1| - 1.3e-08 35.1 30.4 2.6e-06 27.8 11.1 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282163287|ref|YP_003355672.1| - 6e-08 32.6 36.0 0.00063 20.1 1.4 4.3 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_22 PF17179.4 gi|282163287|ref|YP_003355672.1| - 3e-07 31.2 21.2 0.0024 18.7 0.5 4.0 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|282163287|ref|YP_003355672.1| - 3.1e-06 27.2 10.4 3.1e-06 27.2 10.4 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|282163287|ref|YP_003355672.1| - 1.1e-05 26.0 41.4 0.0064 17.3 4.8 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282163287|ref|YP_003355672.1| - 1.1e-05 25.8 32.7 0.0039 17.7 14.0 3.9 1 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282163287|ref|YP_003355672.1| - 0.00087 19.8 26.1 0.016 15.7 0.8 4.1 3 1 1 4 4 4 3 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|282163287|ref|YP_003355672.1| - 0.013 16.2 0.8 0.013 16.2 0.8 4.1 3 1 1 4 4 3 0 4Fe-4S single cluster domain Chromo_shadow PF01393.19 gi|282163287|ref|YP_003355672.1| - 0.074 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Chromo shadow domain Fer4_18 PF13746.6 gi|282163287|ref|YP_003355672.1| - 4 7.7 28.3 0.23 11.7 1.5 3.8 1 1 2 3 3 3 0 4Fe-4S dicluster domain AFOR_C PF01314.18 gi|282163288|ref|YP_003355673.1| - 5.1e-126 420.7 0.1 6.6e-126 420.4 0.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|282163288|ref|YP_003355673.1| - 4.1e-75 252.0 0.0 6.6e-75 251.3 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Glutaredoxin PF00462.24 gi|282163289|ref|YP_003355674.1| - 6.3e-18 64.7 0.3 7.8e-18 64.5 0.3 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|282163289|ref|YP_003355674.1| - 5e-08 32.9 0.4 6.6e-08 32.5 0.4 1.2 1 0 0 1 1 1 1 Thioredoxin domain GST_N_3 PF13417.6 gi|282163289|ref|YP_003355674.1| - 5.4e-06 26.7 0.0 6.5e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.6 gi|282163289|ref|YP_003355674.1| - 0.0001 22.7 0.6 0.0016 18.9 0.6 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain DUF836 PF05768.14 gi|282163289|ref|YP_003355674.1| - 0.00019 21.8 0.0 0.00021 21.6 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_4 PF13462.6 gi|282163289|ref|YP_003355674.1| - 0.00084 19.5 0.4 0.21 11.7 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin GST_N PF02798.20 gi|282163289|ref|YP_003355674.1| - 0.0081 16.5 0.0 0.0095 16.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ArsC PF03960.15 gi|282163289|ref|YP_003355674.1| - 0.032 14.3 0.2 0.14 12.2 0.2 1.9 1 1 0 1 1 1 0 ArsC family Thioredoxin PF00085.20 gi|282163289|ref|YP_003355674.1| - 0.071 13.1 0.0 0.083 12.9 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin DSBA PF01323.20 gi|282163289|ref|YP_003355674.1| - 0.079 12.7 0.8 4.6 7.0 0.1 2.0 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Pyr_redox_2 PF07992.14 gi|282163290|ref|YP_003355675.1| - 8.6e-39 133.5 5.9 1.1e-38 133.2 5.9 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|282163290|ref|YP_003355675.1| - 1.2e-21 77.3 2.3 1.8e-15 57.0 0.0 2.4 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|282163290|ref|YP_003355675.1| - 1.1e-09 38.7 5.2 4.6e-07 30.3 0.5 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|282163290|ref|YP_003355675.1| - 1.9e-08 33.9 7.3 0.00026 20.2 0.8 3.4 3 1 1 4 4 4 3 Glucose inhibited division protein A HI0933_like PF03486.14 gi|282163290|ref|YP_003355675.1| - 2.4e-06 26.5 4.7 0.00041 19.2 0.5 2.9 3 0 0 3 3 3 2 HI0933-like protein K_oxygenase PF13434.6 gi|282163290|ref|YP_003355675.1| - 3.2e-06 26.5 0.3 0.0018 17.5 0.0 2.6 2 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|282163290|ref|YP_003355675.1| - 1.3e-05 24.5 9.1 0.00012 21.3 0.7 3.8 3 1 1 4 4 4 1 FAD binding domain FAD_oxidored PF12831.7 gi|282163290|ref|YP_003355675.1| - 3.2e-05 23.5 0.2 3.2e-05 23.5 0.2 2.7 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|282163290|ref|YP_003355675.1| - 6.3e-05 23.1 0.1 0.00019 21.6 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|282163290|ref|YP_003355675.1| - 7.8e-05 22.7 2.3 0.0051 16.8 0.0 3.0 3 0 0 3 3 3 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|282163290|ref|YP_003355675.1| - 0.00012 21.2 7.8 0.038 13.0 0.0 3.4 2 2 2 4 4 4 2 Lycopene cyclase protein Thi4 PF01946.17 gi|282163290|ref|YP_003355675.1| - 0.00071 18.9 0.3 0.00071 18.9 0.3 2.3 2 1 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.6 gi|282163290|ref|YP_003355675.1| - 0.0017 18.7 1.3 0.088 13.3 0.4 2.6 2 2 0 2 2 2 1 Putative NAD(P)-binding DAO PF01266.24 gi|282163290|ref|YP_003355675.1| - 0.0054 16.3 4.8 0.099 12.2 0.9 3.0 2 1 1 3 3 3 1 FAD dependent oxidoreductase Sirohm_synth_M PF14824.6 gi|282163290|ref|YP_003355675.1| - 0.032 13.7 0.6 0.12 11.8 0.0 2.2 2 0 0 2 2 2 0 Sirohaem biosynthesis protein central AlaDh_PNT_C PF01262.21 gi|282163290|ref|YP_003355675.1| - 0.15 11.3 5.2 0.99 8.7 0.5 2.6 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|282163290|ref|YP_003355675.1| - 0.29 9.9 3.4 2.6 6.8 0.5 2.5 3 0 0 3 3 3 0 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|282163290|ref|YP_003355675.1| - 0.58 9.4 3.0 0.2 10.8 0.3 1.5 2 0 0 2 2 2 0 FAD binding domain MreB_Mbl PF06723.13 gi|282163292|ref|YP_003355677.1| - 6.3e-09 35.1 0.0 8e-09 34.7 0.0 1.1 1 0 0 1 1 1 1 MreB/Mbl protein FtsA PF14450.6 gi|282163292|ref|YP_003355677.1| - 3.8e-07 30.5 0.0 8.2e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 Cell division protein FtsA BcrAD_BadFG PF01869.20 gi|282163292|ref|YP_003355677.1| - 0.00087 18.9 0.0 0.0023 17.5 0.0 1.7 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Actin PF00022.19 gi|282163292|ref|YP_003355677.1| - 0.0013 17.4 0.0 0.0021 16.8 0.0 1.3 1 0 0 1 1 1 1 Actin PilM_2 PF11104.8 gi|282163292|ref|YP_003355677.1| - 0.0047 16.0 0.1 0.054 12.5 0.0 2.1 2 0 0 2 2 2 1 Type IV pilus assembly protein PilM; CarboxypepD_reg PF13620.6 gi|282163293|ref|YP_003355678.1| - 3.1e-23 81.8 11.2 3.3e-09 36.9 0.5 4.7 4 0 0 4 4 4 4 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|282163293|ref|YP_003355678.1| - 1.6e-13 50.5 13.5 7.6e-05 22.6 0.3 5.6 5 0 0 5 5 5 4 CarboxypepD_reg-like domain PEGA PF08308.11 gi|282163293|ref|YP_003355678.1| - 1.9e-11 43.7 0.1 1.7e-10 40.6 0.0 2.4 2 0 0 2 2 2 1 PEGA domain Dioxygenase_C PF00775.21 gi|282163293|ref|YP_003355678.1| - 2.9e-09 36.6 0.1 5e-05 22.8 0.0 2.4 2 0 0 2 2 2 2 Dioxygenase SdrD_B PF17210.3 gi|282163293|ref|YP_003355678.1| - 1.1e-08 35.3 10.5 0.0053 17.0 0.5 3.6 3 0 0 3 3 3 3 SdrD B-like domain DUF1416 PF07210.12 gi|282163293|ref|YP_003355678.1| - 6.2e-08 32.4 0.2 0.024 14.5 0.0 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF1416) Big_1 PF02369.16 gi|282163293|ref|YP_003355678.1| - 7.7e-06 25.8 12.3 0.0016 18.4 0.1 4.3 4 1 0 4 4 4 2 Bacterial Ig-like domain (group 1) bMG3 PF11974.8 gi|282163293|ref|YP_003355678.1| - 3.5e-05 23.7 4.6 0.0054 16.7 0.0 4.1 4 1 0 4 4 4 1 Bacterial alpha-2-macroglobulin MG3 domain TTR-52 PF01060.23 gi|282163293|ref|YP_003355678.1| - 0.00012 22.6 1.0 0.32 11.7 0.1 2.7 2 0 0 2 2 2 2 Transthyretin-like family fn3_3 PF14686.6 gi|282163293|ref|YP_003355678.1| - 0.0003 20.5 10.2 0.0006 19.6 2.9 3.8 4 0 0 4 4 4 1 Polysaccharide lyase family 4, domain II DUF4198 PF10670.9 gi|282163293|ref|YP_003355678.1| - 0.0031 17.9 4.8 10 6.4 0.0 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF4198) SpaA PF17802.1 gi|282163293|ref|YP_003355678.1| - 0.0065 16.8 10.7 0.34 11.3 0.4 3.8 3 0 0 3 3 3 2 Prealbumin-like fold domain MG4 PF17789.1 gi|282163293|ref|YP_003355678.1| - 0.029 14.5 3.5 1.1 9.4 0.1 2.6 2 0 0 2 2 2 0 Macroglobulin domain MG4 NotI PF12183.8 gi|282163293|ref|YP_003355678.1| - 0.067 12.5 0.0 0.42 9.9 0.0 2.0 2 0 0 2 2 2 0 Restriction endonuclease NotI YtkA PF13115.6 gi|282163293|ref|YP_003355678.1| - 0.068 13.8 2.2 0.53 10.9 0.7 2.9 2 1 0 2 2 2 0 YtkA-like Big_6 PF17936.1 gi|282163293|ref|YP_003355678.1| - 0.097 13.0 6.0 0.17 12.2 0.2 3.3 2 1 0 2 2 2 0 Bacterial Ig domain MFS_Mycoplasma PF07672.13 gi|282163293|ref|YP_003355678.1| - 0.11 11.8 2.3 0.22 10.8 2.3 1.4 1 0 0 1 1 1 0 Mycoplasma MFS transporter Gemini_mov PF01708.16 gi|282163293|ref|YP_003355678.1| - 0.55 10.0 1.7 0.76 9.6 0.1 2.1 2 0 0 2 2 2 0 Geminivirus putative movement protein DUF4834 PF16118.5 gi|282163293|ref|YP_003355678.1| - 0.59 11.1 0.0 0.59 11.1 0.0 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF4834) Invasin_D3 PF09134.10 gi|282163293|ref|YP_003355678.1| - 7.2 7.0 13.6 3.8 7.9 1.0 3.9 4 1 0 4 4 4 0 Invasin, domain 3 Radical_SAM PF04055.21 gi|282163294|ref|YP_003355679.1| - 1.3e-18 67.9 0.1 2.4e-18 67.1 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily zf-C4_Topoisom PF01396.19 gi|282163294|ref|YP_003355679.1| - 0.014 15.1 7.3 0.5 10.2 0.0 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger YhfH PF14149.6 gi|282163294|ref|YP_003355679.1| - 0.016 15.1 0.6 0.016 15.1 0.6 3.0 3 0 0 3 3 3 0 YhfH-like protein Fer4_12 PF13353.6 gi|282163294|ref|YP_003355679.1| - 0.058 13.7 1.4 0.13 12.5 1.4 1.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain DZR PF12773.7 gi|282163294|ref|YP_003355679.1| - 0.13 12.3 0.1 0.13 12.3 0.1 3.3 3 0 0 3 3 3 0 Double zinc ribbon Fer4_14 PF13394.6 gi|282163294|ref|YP_003355679.1| - 0.13 12.4 2.2 0.27 11.4 1.0 2.1 1 1 1 2 2 2 0 4Fe-4S single cluster domain zf-4CXXC_R1 PF10497.9 gi|282163294|ref|YP_003355679.1| - 0.19 12.0 0.1 0.19 12.0 0.1 2.7 3 1 0 3 3 3 0 Zinc-finger domain of monoamine-oxidase A repressor R1 zf_C2H2_10 PF18414.1 gi|282163294|ref|YP_003355679.1| - 0.22 11.1 11.8 0.6 9.7 2.0 3.2 3 0 0 3 3 3 0 C2H2 type zinc-finger DUF1272 PF06906.11 gi|282163294|ref|YP_003355679.1| - 2.7 8.2 8.4 5.3 7.2 0.0 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF1272) zf_UBZ PF18439.1 gi|282163294|ref|YP_003355679.1| - 8.4 6.1 10.6 1.6 8.4 0.2 3.7 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger AdoMet_Synthase PF01941.19 gi|282163295|ref|YP_003355680.1| - 6.9e-134 446.6 0.3 8.2e-134 446.3 0.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|282163295|ref|YP_003355680.1| - 0.0059 17.3 0.0 0.017 15.8 0.0 1.7 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, N-terminal domain Fe-S_assembly PF04384.13 gi|282163295|ref|YP_003355680.1| - 0.039 14.5 0.2 10 6.8 0.1 2.7 3 0 0 3 3 3 0 Iron-sulphur cluster assembly SMC_ScpB PF04079.16 gi|282163296|ref|YP_003355681.1| - 3.1e-39 134.1 0.1 4.4e-39 133.7 0.1 1.2 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_20 PF12840.7 gi|282163296|ref|YP_003355681.1| - 0.0056 16.7 0.0 0.045 13.8 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|282163296|ref|YP_003355681.1| - 0.039 13.9 0.9 5.1 7.2 0.1 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix KORA PF16509.5 gi|282163296|ref|YP_003355681.1| - 0.12 12.7 0.0 14 6.0 0.0 2.3 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor SMC_ScpA PF02616.14 gi|282163297|ref|YP_003355682.1| - 2.1e-17 63.8 0.1 5.2e-15 56.0 0.1 2.1 1 1 0 1 1 1 1 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 gi|282163297|ref|YP_003355682.1| - 0.085 12.2 0.0 0.26 10.6 0.0 1.8 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein SMC_N PF02463.19 gi|282163298|ref|YP_003355683.1| - 8.9e-77 257.4 0.0 1.4e-76 256.7 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|282163298|ref|YP_003355683.1| - 3.9e-33 114.2 0.0 2e-32 112.0 0.0 2.3 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|282163298|ref|YP_003355683.1| - 8.9e-17 62.3 4.5 8.9e-17 62.3 4.5 5.7 3 2 2 5 5 4 1 AAA domain AAA_21 PF13304.6 gi|282163298|ref|YP_003355683.1| - 6.6e-12 45.8 6.4 4e-06 26.8 0.0 3.8 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|282163298|ref|YP_003355683.1| - 2e-06 27.8 29.8 2e-06 27.8 29.8 4.5 2 2 0 2 2 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|282163298|ref|YP_003355683.1| - 4.9e-06 26.2 0.0 1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Spc7 PF08317.11 gi|282163298|ref|YP_003355683.1| - 9.9e-05 21.4 88.7 0.0016 17.4 9.4 7.0 2 2 5 7 7 7 4 Spc7 kinetochore protein AAA_13 PF13166.6 gi|282163298|ref|YP_003355683.1| - 0.00013 20.8 10.4 0.00013 20.8 10.4 5.5 3 2 2 5 5 5 3 AAA domain DUF3584 PF12128.8 gi|282163298|ref|YP_003355683.1| - 0.0019 15.8 5.1 0.0019 15.8 5.1 5.0 3 2 1 5 5 5 3 Protein of unknown function (DUF3584) ATG16 PF08614.11 gi|282163298|ref|YP_003355683.1| - 0.0024 18.1 89.1 0.037 14.3 10.9 7.1 3 3 3 6 6 6 4 Autophagy protein 16 (ATG16) DUF4472 PF14739.6 gi|282163298|ref|YP_003355683.1| - 0.027 15.2 1.8 0.027 15.2 1.8 7.1 5 3 2 7 7 7 0 Domain of unknown function (DUF4472) DUF4686 PF15742.5 gi|282163298|ref|YP_003355683.1| - 1.6 7.8 64.7 0.015 14.5 21.8 4.8 3 2 1 4 4 4 0 Domain of unknown function (DUF4686) DUF1664 PF07889.12 gi|282163298|ref|YP_003355683.1| - 2.7 8.0 55.4 0.36 10.9 1.7 9.2 5 2 5 11 11 11 0 Protein of unknown function (DUF1664) KASH_CCD PF14662.6 gi|282163298|ref|YP_003355683.1| - 3.1 7.6 77.5 0.045 13.6 9.4 6.3 2 2 2 6 6 6 0 Coiled-coil region of CCDC155 or KASH FUSC PF04632.12 gi|282163298|ref|YP_003355683.1| - 4 5.9 22.4 2.3 6.7 3.9 4.0 3 1 1 4 4 4 0 Fusaric acid resistance protein family Fez1 PF06818.15 gi|282163298|ref|YP_003355683.1| - 4.3 7.7 77.5 0.039 14.4 8.2 7.3 2 2 6 9 9 9 0 Fez1 Lip_prot_lig_C PF10437.9 gi|282163298|ref|YP_003355683.1| - 4.8 7.3 6.1 34 4.5 0.0 4.2 4 0 0 4 4 4 0 Bacterial lipoate protein ligase C-terminus Spc29 PF17082.5 gi|282163299|ref|YP_003355684.1| - 0.0024 17.7 1.2 0.0031 17.4 1.2 1.3 1 1 0 1 1 1 1 Spindle Pole Component 29 Phage_GP20 PF06810.11 gi|282163299|ref|YP_003355684.1| - 0.0026 17.6 1.7 0.0039 17.0 1.7 1.3 1 0 0 1 1 1 1 Phage minor structural protein GP20 TMF_DNA_bd PF12329.8 gi|282163299|ref|YP_003355684.1| - 0.015 15.3 5.8 0.12 12.4 5.8 2.0 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding ATG16 PF08614.11 gi|282163299|ref|YP_003355684.1| - 0.015 15.5 2.9 0.023 14.9 2.9 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) MPS2 PF17060.5 gi|282163299|ref|YP_003355684.1| - 0.031 13.6 0.2 0.043 13.1 0.2 1.2 1 0 0 1 1 1 0 Monopolar spindle protein 2 KLRAQ PF10205.9 gi|282163299|ref|YP_003355684.1| - 0.035 14.3 1.1 0.055 13.7 1.1 1.3 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein Tropomyosin_1 PF12718.7 gi|282163299|ref|YP_003355684.1| - 0.036 14.2 5.9 0.12 12.5 5.9 1.8 1 1 0 1 1 1 0 Tropomyosin like JMY PF15871.5 gi|282163299|ref|YP_003355684.1| - 0.061 12.6 1.2 0.076 12.3 1.2 1.1 1 0 0 1 1 1 0 Junction-mediating and -regulatory protein Lebercilin PF15619.6 gi|282163299|ref|YP_003355684.1| - 0.092 12.4 4.6 0.21 11.3 4.6 1.6 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease DUF641 PF04859.12 gi|282163299|ref|YP_003355684.1| - 0.093 13.1 5.0 0.1 12.9 1.5 2.2 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DUF745 PF05335.13 gi|282163299|ref|YP_003355684.1| - 0.095 12.4 2.9 0.23 11.2 2.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF745) XhlA PF10779.9 gi|282163299|ref|YP_003355684.1| - 0.12 12.5 2.0 11 6.4 0.0 2.3 2 0 0 2 2 2 0 Haemolysin XhlA DegQ PF08181.11 gi|282163299|ref|YP_003355684.1| - 0.13 12.4 1.4 6.5 6.9 0.0 2.4 2 0 0 2 2 2 0 DegQ (SacQ) family DUF948 PF06103.11 gi|282163299|ref|YP_003355684.1| - 0.14 12.5 1.0 0.22 11.8 1.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 gi|282163299|ref|YP_003355684.1| - 0.14 12.6 1.3 1.2 9.6 0.1 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|282163299|ref|YP_003355684.1| - 0.15 12.1 2.3 0.33 11.0 2.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 gi|282163299|ref|YP_003355684.1| - 0.17 12.3 6.0 0.95 9.9 0.9 2.3 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Seryl_tRNA_N PF02403.22 gi|282163299|ref|YP_003355684.1| - 0.21 11.9 3.4 0.16 12.2 1.8 1.6 2 0 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain ABC_tran_CTD PF16326.5 gi|282163299|ref|YP_003355684.1| - 0.22 11.8 2.8 1.9 8.8 2.4 2.2 1 1 1 2 2 2 0 ABC transporter C-terminal domain DUF16 PF01519.16 gi|282163299|ref|YP_003355684.1| - 0.23 11.9 2.6 0.58 10.7 2.6 1.7 1 1 0 1 1 1 0 Protein of unknown function DUF16 bZIP_1 PF00170.21 gi|282163299|ref|YP_003355684.1| - 0.3 11.2 3.5 3.3 7.9 0.0 2.2 2 0 0 2 2 2 0 bZIP transcription factor DUF2730 PF10805.8 gi|282163299|ref|YP_003355684.1| - 0.33 11.1 3.3 0.55 10.3 3.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) Prefoldin_2 PF01920.20 gi|282163299|ref|YP_003355684.1| - 0.37 10.8 6.9 5 7.1 1.9 2.2 1 1 1 2 2 2 0 Prefoldin subunit YabA PF06156.13 gi|282163299|ref|YP_003355684.1| - 0.39 11.4 2.7 1.2 9.9 2.7 1.7 1 1 0 1 1 1 0 Initiation control protein YabA CdvA PF18822.1 gi|282163299|ref|YP_003355684.1| - 0.4 10.5 7.1 0.81 9.5 1.8 2.3 1 1 1 2 2 2 0 CdvA-like coiled-coil domain Cep57_MT_bd PF06657.13 gi|282163299|ref|YP_003355684.1| - 0.44 11.0 5.9 6.1 7.4 0.1 2.2 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 ZapB PF06005.12 gi|282163299|ref|YP_003355684.1| - 0.5 10.8 6.9 3.1 8.3 6.9 2.0 1 1 0 1 1 1 0 Cell division protein ZapB SlyX PF04102.12 gi|282163299|ref|YP_003355684.1| - 0.64 10.7 4.1 15 6.3 0.2 2.3 1 1 1 2 2 2 0 SlyX Med4 PF10018.9 gi|282163299|ref|YP_003355684.1| - 0.83 9.3 5.0 4.9 6.8 1.6 2.1 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Nas2_N PF18265.1 gi|282163299|ref|YP_003355684.1| - 1.2 9.1 4.5 16 5.5 0.2 2.8 1 1 1 2 2 2 0 Nas2 N_terminal domain Spc24 PF08286.11 gi|282163299|ref|YP_003355684.1| - 1.4 9.2 4.6 4.8 7.5 0.2 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF3160 PF11369.8 gi|282163300|ref|YP_003355685.1| - 3.7e-239 795.4 0.3 4.2e-239 795.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) TAT_signal PF10518.9 gi|282163300|ref|YP_003355685.1| - 0.0031 17.3 5.2 0.0071 16.2 5.2 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence IF-2B PF01008.17 gi|282163301|ref|YP_003355686.1| - 5.7e-85 284.9 0.0 6.7e-85 284.7 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF5612 PF18462.1 gi|282163302|ref|YP_003355687.1| - 5e-73 243.6 3.1 8.9e-73 242.8 3.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|282163302|ref|YP_003355687.1| - 5.2e-12 45.3 0.1 1.4e-10 40.7 0.0 2.7 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|282163302|ref|YP_003355687.1| - 3.3e-06 27.6 0.0 7.8e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 ACT domain Peripla_BP_1 PF00532.21 gi|282163302|ref|YP_003355687.1| - 0.0047 16.4 0.0 0.011 15.2 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Transketolase_C PF02780.20 gi|282163302|ref|YP_003355687.1| - 0.036 14.0 0.3 0.14 12.0 0.3 1.9 1 1 0 1 1 1 0 Transketolase, C-terminal domain DUF5118 PF17162.4 gi|282163302|ref|YP_003355687.1| - 0.14 12.0 0.3 2.4 8.1 0.1 3.0 3 1 1 4 4 4 0 Domain of unknown function (DUF5118) AhpC-TSA PF00578.21 gi|282163303|ref|YP_003355688.1| - 9.2e-38 129.0 0.0 1.3e-37 128.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|282163303|ref|YP_003355688.1| - 9.9e-19 67.5 0.0 1.3e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|282163303|ref|YP_003355688.1| - 6.2e-17 61.2 0.3 1.2e-16 60.2 0.3 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Thioredoxin_8 PF13905.6 gi|282163303|ref|YP_003355688.1| - 0.067 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like SCO1-SenC PF02630.14 gi|282163303|ref|YP_003355688.1| - 0.15 12.0 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 SCO1/SenC Laminin_G_3 PF13385.6 gi|282163304|ref|YP_003355689.1| - 0.1 12.7 0.3 0.33 11.1 0.2 1.9 1 1 0 1 1 1 0 Concanavalin A-like lectin/glucanases superfamily Isochorismatase PF00857.20 gi|282163305|ref|YP_003355690.1| - 9.2e-22 78.1 0.0 1.4e-21 77.5 0.0 1.3 1 0 0 1 1 1 1 Isochorismatase family Cpn60_TCP1 PF00118.24 gi|282163306|ref|YP_003355691.1| - 3e-184 613.3 19.1 3.4e-184 613.1 19.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3924 PF13062.6 gi|282163306|ref|YP_003355691.1| - 0.1 12.6 0.1 0.69 9.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3924) Inhibitor_I42 PF09394.10 gi|282163307|ref|YP_003355692.1| - 1.8e-14 53.9 0.0 2.1e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 PAPS_reduct PF01507.19 gi|282163308|ref|YP_003355693.1| - 1.3e-42 145.8 0.0 1.9e-42 145.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|282163308|ref|YP_003355693.1| - 7.3e-16 57.9 0.4 1.9e-15 56.5 0.4 1.7 1 0 0 1 1 1 1 PUA domain Fer4_10 PF13237.6 gi|282163308|ref|YP_003355693.1| - 4.2e-07 30.0 11.8 4.2e-07 30.0 11.8 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282163308|ref|YP_003355693.1| - 3.3e-06 27.2 12.1 3.3e-06 27.2 12.1 2.9 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282163308|ref|YP_003355693.1| - 1.2e-05 24.9 19.0 5e-05 22.9 7.2 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282163308|ref|YP_003355693.1| - 1.3e-05 25.7 12.8 1.3e-05 25.7 12.8 2.5 3 0 0 3 3 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282163308|ref|YP_003355693.1| - 0.00019 21.6 4.0 0.00048 20.3 4.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282163308|ref|YP_003355693.1| - 0.00054 20.0 14.0 0.00054 20.0 14.0 2.7 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282163308|ref|YP_003355693.1| - 0.0069 17.3 4.5 0.0069 17.3 4.5 3.2 2 1 1 3 3 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|282163308|ref|YP_003355693.1| - 0.0072 16.8 1.3 0.0072 16.8 1.3 4.1 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282163308|ref|YP_003355693.1| - 0.078 13.1 25.2 0.41 10.8 6.2 3.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282163308|ref|YP_003355693.1| - 0.65 10.2 24.6 0.23 11.6 6.6 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|282163308|ref|YP_003355693.1| - 1.3 9.7 11.3 2 9.0 1.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|282163308|ref|YP_003355693.1| - 1.3 9.6 21.5 0.17 12.4 0.8 3.3 3 1 2 5 5 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282163308|ref|YP_003355693.1| - 2.4 9.0 9.4 10 6.9 1.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|282163308|ref|YP_003355693.1| - 3.3 8.6 14.0 2.6 9.0 2.8 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain GATase PF00117.28 gi|282163309|ref|YP_003355694.1| - 4.5e-21 75.5 0.0 5.3e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|282163309|ref|YP_003355694.1| - 5.8e-06 26.3 0.0 8e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|282163309|ref|YP_003355694.1| - 5.4e-05 22.9 0.1 0.00011 21.9 0.1 1.6 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|282163309|ref|YP_003355694.1| - 0.00065 19.5 0.5 0.005 16.6 0.4 2.2 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|282163309|ref|YP_003355694.1| - 0.13 12.1 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family GtrA PF04138.14 gi|282163310|ref|YP_003355695.1| - 1.8e-19 70.1 17.7 2.9e-19 69.4 17.7 1.3 1 1 0 1 1 1 1 GtrA-like protein UPF0767 PF15990.5 gi|282163310|ref|YP_003355695.1| - 0.045 13.9 1.4 6.5 7.0 0.1 2.5 2 0 0 2 2 2 0 UPF0767 family Herpes_U5 PF05999.11 gi|282163310|ref|YP_003355695.1| - 0.1 11.4 0.1 0.13 10.9 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus U5-like family DUF4396 PF14342.6 gi|282163310|ref|YP_003355695.1| - 0.12 12.8 5.3 0.16 12.4 5.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) DUF1453 PF07301.11 gi|282163310|ref|YP_003355695.1| - 0.12 12.4 5.9 0.47 10.5 4.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1453) DisA_N PF02457.16 gi|282163311|ref|YP_003355696.1| - 7.6e-16 57.8 0.3 1.3e-15 57.0 0.3 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding Glyco_tranf_2_3 PF13641.6 gi|282163312|ref|YP_003355697.1| - 5.8e-33 114.7 0.0 7.7e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|282163312|ref|YP_003355697.1| - 1.1e-27 97.2 0.8 1.1e-27 97.2 0.8 1.9 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|282163312|ref|YP_003355697.1| - 4.7e-22 78.6 0.0 6.5e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|282163312|ref|YP_003355697.1| - 7.9e-16 58.0 0.0 1.3e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|282163312|ref|YP_003355697.1| - 8e-07 28.8 0.0 3.2e-06 26.8 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 4HB_MCP_1 PF12729.7 gi|282163312|ref|YP_003355697.1| - 0.017 14.7 0.0 0.049 13.2 0.0 1.7 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction DUF2207 PF09972.9 gi|282163312|ref|YP_003355697.1| - 0.14 10.9 3.1 0.7 8.6 0.8 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Phage_holin_3_6 PF07332.11 gi|282163312|ref|YP_003355697.1| - 4.2 7.4 10.4 0.89 9.6 0.1 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III AhpC-TSA PF00578.21 gi|282163313|ref|YP_003355698.1| - 3.8e-27 94.7 0.0 4.5e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|282163313|ref|YP_003355698.1| - 4.2e-18 65.5 0.0 5e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 gi|282163313|ref|YP_003355698.1| - 1.6e-05 25.1 0.0 2.5e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|282163313|ref|YP_003355698.1| - 0.066 13.2 0.0 0.094 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin dUTPase PF00692.19 gi|282163314|ref|YP_003355699.1| - 2.4e-12 46.6 0.0 3.6e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 dUTPase TrmO PF01980.16 gi|282163315|ref|YP_003355700.1| - 1.2e-28 99.8 0.0 1.4e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O AIM24 PF01987.17 gi|282163316|ref|YP_003355701.1| - 2.8e-58 197.0 0.5 3.1e-58 196.9 0.5 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 LVIVD PF08309.11 gi|282163317|ref|YP_003355702.1| - 0.0014 17.9 0.4 0.0031 16.8 0.4 1.5 1 0 0 1 1 1 1 LVIVD repeat FAP PF07174.11 gi|282163317|ref|YP_003355702.1| - 0.04 13.4 8.8 0.062 12.8 8.8 1.2 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) PsbR PF04725.12 gi|282163317|ref|YP_003355702.1| - 0.042 14.2 0.6 1.3 9.4 0.0 2.4 2 0 0 2 2 2 0 Photosystem II 10 kDa polypeptide PsbR DEC-1_N PF04625.13 gi|282163317|ref|YP_003355702.1| - 2.8 6.8 8.1 3.7 6.4 8.1 1.2 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Fer4 PF00037.27 gi|282163318|ref|YP_003355703.1| - 2.2e-11 43.1 12.3 9.2e-06 25.3 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282163318|ref|YP_003355703.1| - 7.9e-09 36.0 25.6 9.9e-07 29.3 14.9 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282163318|ref|YP_003355703.1| - 1e-07 31.7 21.0 6.9e-05 22.7 3.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282163318|ref|YP_003355703.1| - 2.1e-07 31.0 12.3 2.1e-07 31.0 12.3 2.5 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282163318|ref|YP_003355703.1| - 3.7e-07 30.1 13.1 3.7e-07 30.1 13.1 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282163318|ref|YP_003355703.1| - 0.0002 21.4 11.3 0.0002 21.4 11.3 2.6 2 1 2 4 4 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282163318|ref|YP_003355703.1| - 0.00035 21.4 10.1 0.0063 17.4 2.1 3.0 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|282163318|ref|YP_003355703.1| - 0.0018 18.3 3.5 0.0018 18.3 3.5 4.0 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|282163318|ref|YP_003355703.1| - 0.0042 17.3 8.4 0.0042 17.3 8.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282163318|ref|YP_003355703.1| - 0.034 14.9 1.8 0.034 14.9 1.8 3.1 3 1 0 3 3 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|282163318|ref|YP_003355703.1| - 0.041 14.4 4.5 0.041 14.4 4.5 3.6 4 0 0 4 4 3 0 4Fe-4S binding domain Ribosomal_S26e PF01283.19 gi|282163318|ref|YP_003355703.1| - 0.17 12.4 0.0 0.17 12.4 0.0 3.3 2 1 1 3 3 3 0 Ribosomal protein S26e Fer4_8 PF13183.6 gi|282163318|ref|YP_003355703.1| - 0.93 10.0 29.3 0.21 12.0 3.8 3.3 1 1 3 4 4 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282163318|ref|YP_003355703.1| - 7.3 7.2 31.3 0.97 10.0 2.4 3.1 1 1 2 3 3 2 0 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|282163319|ref|YP_003355704.1| - 9e-11 42.5 0.0 1.6e-08 35.1 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|282163319|ref|YP_003355704.1| - 4.2e-10 40.0 0.0 8e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|282163319|ref|YP_003355704.1| - 1.3e-07 31.4 0.1 5.8e-07 29.4 0.1 2.1 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain NACHT PF05729.12 gi|282163319|ref|YP_003355704.1| - 0.00099 19.1 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|282163319|ref|YP_003355704.1| - 0.0024 18.3 0.1 0.0074 16.7 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|282163319|ref|YP_003355704.1| - 0.017 14.6 0.0 0.12 11.9 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region DUF815 PF05673.13 gi|282163319|ref|YP_003355704.1| - 0.039 13.1 0.0 0.19 10.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|282163319|ref|YP_003355704.1| - 0.041 13.1 0.0 0.063 12.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|282163319|ref|YP_003355704.1| - 0.042 13.6 0.0 0.055 13.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain TIP49_C PF17856.1 gi|282163319|ref|YP_003355704.1| - 0.045 13.9 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 TIP49 AAA-lid domain Sigma54_activ_2 PF14532.6 gi|282163319|ref|YP_003355704.1| - 0.13 12.4 0.2 8.5 6.5 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain PMT_2 PF13231.6 gi|282163320|ref|YP_003355705.1| - 1.7e-07 31.6 9.7 1.7e-07 31.6 9.7 2.9 2 1 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Phage_holin_3_7 PF05449.11 gi|282163320|ref|YP_003355705.1| - 0.037 14.0 1.6 0.35 10.9 0.1 3.1 3 0 0 3 3 3 0 Putative 3TM holin, Phage_holin_3 EAGR_box PF16713.5 gi|282163320|ref|YP_003355705.1| - 0.48 10.1 3.1 2.9 7.6 0.2 2.5 2 0 0 2 2 2 0 Enriched in aromatic and glycine Residues box SWIM PF04434.17 gi|282163321|ref|YP_003355706.1| - 0.00043 19.9 0.2 0.00068 19.3 0.2 1.2 1 0 0 1 1 1 1 SWIM zinc finger NIF3 PF01784.18 gi|282163322|ref|YP_003355707.1| - 3.2e-52 177.6 0.0 4e-52 177.3 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Radical_SAM PF04055.21 gi|282163323|ref|YP_003355708.1| - 1.1e-33 116.9 0.0 2.2e-33 116.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|282163323|ref|YP_003355708.1| - 4.7e-16 58.9 0.1 8.4e-16 58.1 0.1 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|282163323|ref|YP_003355708.1| - 3e-07 30.8 0.0 4.8e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|282163323|ref|YP_003355708.1| - 5.1e-06 26.6 0.0 1e-05 25.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Dpoe2NT PF12213.8 gi|282163323|ref|YP_003355708.1| - 0.13 12.6 0.0 15 6.0 0.0 2.4 2 0 0 2 2 2 0 DNA polymerases epsilon N terminal GDE_N_bis PF14742.6 gi|282163324|ref|YP_003355709.1| - 2.2e-45 154.6 0.0 3.5e-45 153.9 0.0 1.3 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.14 gi|282163324|ref|YP_003355709.1| - 1.4e-10 40.7 0.0 7.7e-10 38.3 0.0 2.3 1 1 1 2 2 2 1 Amylo-alpha-1,6-glucosidase Glyco_hydro_63 PF03200.16 gi|282163324|ref|YP_003355709.1| - 0.0023 16.8 0.1 0.0039 16.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 63 C-terminal domain Trehalase PF01204.18 gi|282163324|ref|YP_003355709.1| - 0.12 11.2 0.1 0.22 10.3 0.0 1.4 2 0 0 2 2 2 0 Trehalase PAS_12 PF18095.1 gi|282163324|ref|YP_003355709.1| - 0.2 11.3 0.2 11 5.6 0.1 2.4 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain Glycos_transf_1 PF00534.20 gi|282163325|ref|YP_003355710.1| - 3.7e-29 101.4 0.0 5.3e-29 101.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282163325|ref|YP_003355710.1| - 2.1e-26 92.9 0.3 5e-26 91.7 0.3 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|282163325|ref|YP_003355710.1| - 2.8e-18 66.6 0.0 5.9e-18 65.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|282163325|ref|YP_003355710.1| - 2e-10 41.3 0.0 4.4e-10 40.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|282163325|ref|YP_003355710.1| - 0.00017 21.9 0.0 0.00036 20.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|282163325|ref|YP_003355710.1| - 0.0015 18.3 0.6 0.14 11.8 0.2 2.3 1 1 0 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|282163325|ref|YP_003355710.1| - 0.0023 17.9 0.0 0.0065 16.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|282163326|ref|YP_003355711.1| - 2.1e-28 99.0 0.0 4e-28 98.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282163326|ref|YP_003355711.1| - 2.8e-21 76.3 0.3 4.6e-21 75.6 0.3 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|282163326|ref|YP_003355711.1| - 5.1e-20 72.3 0.0 7.8e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|282163326|ref|YP_003355711.1| - 1.1e-10 42.2 0.0 2.2e-10 41.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|282163326|ref|YP_003355711.1| - 0.0087 16.1 0.1 0.034 14.2 0.1 2.0 2 1 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|282163326|ref|YP_003355711.1| - 0.012 15.3 0.8 0.23 11.1 0.5 2.4 3 0 0 3 3 3 0 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|282163326|ref|YP_003355711.1| - 0.02 15.2 0.0 0.04 14.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 PIG-L PF02585.17 gi|282163326|ref|YP_003355711.1| - 0.052 14.2 0.0 0.94 10.1 0.0 2.4 2 0 0 2 2 2 0 GlcNAc-PI de-N-acetylase Epimerase_2 PF02350.19 gi|282163326|ref|YP_003355711.1| - 0.097 11.5 0.1 1.8 7.3 0.0 2.4 2 1 0 3 3 3 0 UDP-N-acetylglucosamine 2-epimerase ThiS PF02597.20 gi|282163327|ref|YP_003355712.1| - 9.4e-11 42.2 0.0 1e-10 42.1 0.0 1.1 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|282163327|ref|YP_003355712.1| - 0.0043 17.1 0.0 0.006 16.6 0.0 1.3 1 0 0 1 1 1 1 TGS domain AFOR_C PF01314.18 gi|282163328|ref|YP_003355713.1| - 3.7e-109 365.2 0.0 4.5e-109 365.0 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|282163328|ref|YP_003355713.1| - 4.9e-72 242.0 0.1 7.4e-72 241.4 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DHDPS PF00701.22 gi|282163329|ref|YP_003355714.1| - 8.6e-61 205.2 0.0 9.7e-61 205.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family NUDIX PF00293.28 gi|282163330|ref|YP_003355715.1| - 5.2e-14 52.4 0.1 6.2e-14 52.2 0.1 1.2 1 1 0 1 1 1 1 NUDIX domain DUF2551 PF10826.8 gi|282163331|ref|YP_003355716.1| - 4.7e-29 100.5 1.1 5.6e-29 100.2 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) PHP PF02811.19 gi|282163333|ref|YP_003355718.1| - 5.3e-12 46.4 0.0 7.5e-12 45.9 0.0 1.3 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|282163333|ref|YP_003355718.1| - 5.9e-12 45.2 2.3 4.4e-11 42.4 0.2 2.8 3 0 0 3 3 3 1 PHP-associated Cpn60_TCP1 PF00118.24 gi|282163334|ref|YP_003355719.1| - 4.8e-173 576.3 12.2 5.8e-173 576.0 12.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Lys_export PF03956.13 gi|282163335|ref|YP_003355720.1| - 2.6e-07 30.3 3.3 3.3e-07 30.0 3.3 1.1 1 0 0 1 1 1 1 Lysine exporter LysO DUF3792 PF12670.7 gi|282163335|ref|YP_003355720.1| - 0.1 12.7 11.1 0.13 12.5 11.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) TssN PF17555.2 gi|282163335|ref|YP_003355720.1| - 2.6 7.4 4.3 5.5 6.3 4.3 1.5 1 1 0 1 1 1 0 Type VI secretion system, TssN PT-VENN PF04829.13 gi|282163335|ref|YP_003355720.1| - 8.8 6.5 7.3 4.1 7.6 2.6 2.4 2 1 1 3 3 3 0 Pre-toxin domain with VENN motif Lys_export PF03956.13 gi|282163336|ref|YP_003355721.1| - 3.1e-62 209.5 19.7 3.7e-62 209.3 19.7 1.0 1 0 0 1 1 1 1 Lysine exporter LysO TssN PF17555.2 gi|282163336|ref|YP_003355721.1| - 0.15 11.5 2.7 0.13 11.6 1.6 1.5 1 1 0 1 1 1 0 Type VI secretion system, TssN DHHA1 PF02272.19 gi|282163338|ref|YP_003355723.1| - 6.3e-16 59.0 0.3 1.6e-15 57.7 0.3 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|282163338|ref|YP_003355723.1| - 0.0028 17.8 0.0 0.0049 17.1 0.0 1.4 1 0 0 1 1 1 1 DHH family DUF2150 PF09920.9 gi|282163339|ref|YP_003355724.1| - 6.4e-61 205.6 0.7 7.3e-61 205.4 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Tai4 PF16695.5 gi|282163339|ref|YP_003355724.1| - 0.18 12.4 0.0 0.35 11.4 0.0 1.5 1 1 0 1 1 1 0 Type VI secretion system (T6SS), amidase immunity protein AA_kinase PF00696.28 gi|282163340|ref|YP_003355725.1| - 7e-11 42.2 0.0 2.6e-05 23.9 0.0 2.1 1 1 1 2 2 2 2 Amino acid kinase family TauE PF01925.19 gi|282163341|ref|YP_003355726.1| - 1.2e-46 159.3 36.8 1.3e-46 159.1 36.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3938 PF13074.6 gi|282163341|ref|YP_003355726.1| - 0.0089 16.2 0.4 0.032 14.5 0.4 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3938) Pox_A9 PF04835.12 gi|282163341|ref|YP_003355726.1| - 1.8 8.8 0.0 1.8 8.8 0.0 3.7 5 0 0 5 5 5 0 A9 protein conserved region DsbD_2 PF13386.6 gi|282163342|ref|YP_003355727.1| - 7.8e-21 74.9 16.7 9.7e-21 74.6 16.7 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region HTH_5 PF01022.20 gi|282163344|ref|YP_003355729.1| - 1.2e-12 47.5 0.0 2e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|282163344|ref|YP_003355729.1| - 2e-08 34.2 0.0 2.9e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.6 gi|282163344|ref|YP_003355729.1| - 0.002 17.9 0.0 0.0031 17.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|282163344|ref|YP_003355729.1| - 0.003 17.5 0.2 0.0063 16.5 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|282163344|ref|YP_003355729.1| - 0.0066 16.6 0.0 0.014 15.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|282163344|ref|YP_003355729.1| - 0.013 15.3 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_24 PF13412.6 gi|282163344|ref|YP_003355729.1| - 0.063 12.8 0.0 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Rio2_N PF09202.11 gi|282163344|ref|YP_003355729.1| - 0.12 12.6 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal zf_UBZ PF18439.1 gi|282163345|ref|YP_003355730.1| - 0.89 9.2 0.2 0.89 9.2 0.2 2.6 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Thioredoxin_3 PF13192.6 gi|282163346|ref|YP_003355731.1| - 1.5e-24 85.9 1.5 1.6e-24 85.7 1.5 1.0 1 0 0 1 1 1 1 Thioredoxin domain ArsD PF06953.11 gi|282163346|ref|YP_003355731.1| - 0.0024 18.2 0.0 0.0034 17.7 0.0 1.3 1 1 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD Thioredoxin_4 PF13462.6 gi|282163346|ref|YP_003355731.1| - 0.0052 17.0 0.4 0.0093 16.1 0.2 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin PF00085.20 gi|282163346|ref|YP_003355731.1| - 0.0065 16.4 0.1 0.0073 16.3 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|282163346|ref|YP_003355731.1| - 0.078 13.2 1.1 0.15 12.3 0.6 1.7 2 1 0 2 2 2 0 Glutaredoxin ArsP_1 PF03773.13 gi|282163347|ref|YP_003355732.1| - 2.7e-77 259.8 24.3 3.3e-77 259.5 24.3 1.0 1 0 0 1 1 1 1 Predicted permease MtrA PF04208.14 gi|282163348|ref|YP_003355733.1| - 1.7e-35 122.2 0.0 2.2e-35 121.8 0.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A DGC PF08859.11 gi|282163349|ref|YP_003355734.1| - 1.7e-24 86.0 0.2 1.9e-24 85.8 0.2 1.0 1 0 0 1 1 1 1 DGC domain Pyr_redox_2 PF07992.14 gi|282163350|ref|YP_003355735.1| - 1.1e-30 106.9 1.9 1.3e-30 106.6 1.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|282163350|ref|YP_003355735.1| - 1.4e-19 70.5 0.6 6.2e-15 55.2 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|282163350|ref|YP_003355735.1| - 6.6e-07 28.8 0.5 0.00073 18.7 0.1 2.5 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.22 gi|282163350|ref|YP_003355735.1| - 0.00015 20.9 2.3 0.0085 15.2 0.3 3.2 3 1 1 4 4 4 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|282163350|ref|YP_003355735.1| - 0.00019 21.9 1.4 0.0045 17.5 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|282163350|ref|YP_003355735.1| - 0.00035 19.4 0.2 0.0079 14.9 0.2 2.3 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|282163350|ref|YP_003355735.1| - 0.0009 18.6 0.8 0.002 17.4 0.1 1.9 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|282163350|ref|YP_003355735.1| - 0.017 14.7 0.3 0.067 12.8 0.4 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|282163350|ref|YP_003355735.1| - 0.024 13.9 0.1 0.067 12.4 0.0 1.8 2 0 0 2 2 2 0 FAD binding domain K_oxygenase PF13434.6 gi|282163350|ref|YP_003355735.1| - 0.035 13.2 0.1 7.6 5.6 0.0 2.5 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|282163350|ref|YP_003355735.1| - 0.071 13.4 0.5 0.2 11.9 0.1 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain ArsP_1 PF03773.13 gi|282163352|ref|YP_003355737.1| - 6.5e-80 268.4 20.0 7.3e-80 268.2 20.0 1.0 1 0 0 1 1 1 1 Predicted permease SBF PF01758.16 gi|282163353|ref|YP_003355738.1| - 1.6e-62 210.7 16.7 1.6e-62 210.7 16.7 2.0 2 0 0 2 2 2 1 Sodium Bile acid symporter family ABC2_membrane PF01061.24 gi|282163354|ref|YP_003355739.1| - 2.6e-21 76.0 21.0 2.6e-21 76.0 21.0 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|282163354|ref|YP_003355739.1| - 1.8e-09 37.2 31.7 2e-09 37.0 30.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|282163354|ref|YP_003355739.1| - 0.00042 19.7 18.8 0.00098 18.5 18.8 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|282163355|ref|YP_003355740.1| - 4.3e-27 95.3 0.0 7.3e-27 94.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163355|ref|YP_003355740.1| - 2.8e-13 50.3 0.0 5.6e-09 36.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|282163355|ref|YP_003355740.1| - 8.1e-07 29.7 0.0 5.7e-06 27.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|282163355|ref|YP_003355740.1| - 0.0013 19.3 0.0 0.0023 18.5 0.0 1.5 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|282163355|ref|YP_003355740.1| - 0.0025 17.3 0.0 0.16 11.4 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|282163355|ref|YP_003355740.1| - 0.0032 16.2 0.0 0.66 8.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|282163355|ref|YP_003355740.1| - 0.023 14.4 0.1 0.083 12.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain B12-binding PF02310.19 gi|282163355|ref|YP_003355740.1| - 0.05 13.6 0.0 8.9 6.4 0.0 2.3 2 0 0 2 2 2 0 B12 binding domain AAA_28 PF13521.6 gi|282163355|ref|YP_003355740.1| - 0.062 13.5 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|282163355|ref|YP_003355740.1| - 0.067 13.6 0.5 0.77 10.2 0.5 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|282163355|ref|YP_003355740.1| - 0.096 12.4 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|282163355|ref|YP_003355740.1| - 0.12 12.6 0.1 2.3 8.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain eRF1_3 PF03465.15 gi|282163355|ref|YP_003355740.1| - 0.14 12.6 0.0 0.49 10.9 0.0 1.9 3 0 0 3 3 3 0 eRF1 domain 3 Cupin_2 PF07883.11 gi|282163356|ref|YP_003355741.1| - 9e-11 41.3 0.0 1.2e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|282163356|ref|YP_003355741.1| - 4.1e-06 26.7 0.0 4.8e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Auxin_BP PF02041.16 gi|282163356|ref|YP_003355741.1| - 0.033 13.8 0.0 0.037 13.7 0.0 1.1 1 0 0 1 1 1 0 Auxin binding protein DUF1936 PF09151.10 gi|282163356|ref|YP_003355741.1| - 0.06 13.3 0.1 0.1 12.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1936) Pirin_C PF05726.13 gi|282163356|ref|YP_003355741.1| - 0.18 12.2 0.0 0.23 11.8 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain AraC_binding_2 PF14525.6 gi|282163356|ref|YP_003355741.1| - 0.19 11.4 0.0 0.21 11.2 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain HTH_5 PF01022.20 gi|282163357|ref|YP_003355742.1| - 1.9e-18 66.0 0.6 3.1e-18 65.4 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|282163357|ref|YP_003355742.1| - 5.4e-09 36.0 0.0 1.3e-08 34.8 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain Methyltransf_31 PF13847.6 gi|282163359|ref|YP_003355744.1| - 1.3e-28 99.8 0.0 1.3e-28 99.8 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282163359|ref|YP_003355744.1| - 1.1e-21 77.3 2.9 1.4e-20 73.8 0.0 2.6 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282163359|ref|YP_003355744.1| - 3.7e-20 72.4 0.4 8.2e-19 68.1 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282163359|ref|YP_003355744.1| - 1e-16 61.0 0.0 1.6e-16 60.4 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|282163359|ref|YP_003355744.1| - 4.5e-12 46.1 0.1 1.2e-11 44.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|282163359|ref|YP_003355744.1| - 9.4e-10 38.6 2.8 2.3e-09 37.3 0.0 2.5 2 1 1 3 3 3 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|282163359|ref|YP_003355744.1| - 2.4e-09 37.8 0.9 6.9e-09 36.4 0.0 2.1 3 0 0 3 3 2 1 Methyltransferase domain PrmA PF06325.13 gi|282163359|ref|YP_003355744.1| - 0.0001 21.8 0.0 0.0001 21.8 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|282163359|ref|YP_003355744.1| - 0.00026 20.6 1.0 0.00062 19.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|282163359|ref|YP_003355744.1| - 0.00054 19.9 0.1 0.00094 19.1 0.1 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|282163359|ref|YP_003355744.1| - 0.0015 17.9 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|282163359|ref|YP_003355744.1| - 0.0025 16.8 0.0 0.0053 15.7 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.16 gi|282163359|ref|YP_003355744.1| - 0.016 13.8 0.0 0.022 13.3 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_32 PF13679.6 gi|282163359|ref|YP_003355744.1| - 0.022 14.8 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain NNMT_PNMT_TEMT PF01234.17 gi|282163359|ref|YP_003355744.1| - 0.12 11.5 0.1 12 5.0 0.0 2.1 1 1 0 2 2 2 0 NNMT/PNMT/TEMT family DOT1 PF08123.13 gi|282163359|ref|YP_003355744.1| - 0.17 11.4 0.1 0.3 10.6 0.1 1.5 1 1 0 1 1 1 0 Histone methylation protein DOT1 DUF4266 PF14086.6 gi|282163359|ref|YP_003355744.1| - 1.3 10.0 9.5 1.3 10.0 4.3 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4266) PspA_IM30 PF04012.12 gi|282163361|ref|YP_003355746.1| - 1.8e-21 76.7 28.7 2.2e-21 76.4 28.7 1.1 1 0 0 1 1 1 1 PspA/IM30 family Flagellin_C PF00700.21 gi|282163361|ref|YP_003355746.1| - 0.037 14.4 0.3 0.037 14.4 0.3 3.4 2 1 1 3 3 3 0 Bacterial flagellin C-terminal helical region GCN5L1 PF06320.13 gi|282163361|ref|YP_003355746.1| - 0.064 13.4 0.7 0.064 13.4 0.7 3.2 2 2 1 3 3 3 0 GCN5-like protein 1 (GCN5L1) UPF0180 PF03698.13 gi|282163361|ref|YP_003355746.1| - 0.15 12.3 2.3 0.51 10.6 1.8 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0180) DUF5082 PF16888.5 gi|282163361|ref|YP_003355746.1| - 0.41 10.9 14.7 0.3 11.4 6.7 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) DUF1664 PF07889.12 gi|282163361|ref|YP_003355746.1| - 0.52 10.4 17.7 0.063 13.3 5.2 3.3 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|282163361|ref|YP_003355746.1| - 0.56 8.8 17.1 0.67 8.5 17.1 1.1 1 0 0 1 1 1 0 AAA domain DUF1811 PF08838.10 gi|282163361|ref|YP_003355746.1| - 0.96 9.7 5.0 0.54 10.5 1.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1811) FUSC PF04632.12 gi|282163361|ref|YP_003355746.1| - 1.7 7.1 6.4 2 6.9 6.4 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family Baculo_PEP_C PF04513.12 gi|282163361|ref|YP_003355746.1| - 3.4 7.7 14.4 9 6.3 2.3 3.4 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus YabA PF06156.13 gi|282163361|ref|YP_003355746.1| - 7.3 7.3 16.3 20 5.9 0.6 3.2 1 1 1 2 2 2 0 Initiation control protein YabA DUF4013 PF13197.6 gi|282163362|ref|YP_003355747.1| - 2.3e-19 69.8 23.5 2.3e-19 69.8 23.5 3.0 1 1 1 3 3 3 1 Protein of unknown function (DUF4013) DUF677 PF05055.12 gi|282163362|ref|YP_003355747.1| - 2.3 7.0 4.0 1.3 7.8 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF677) APH PF01636.23 gi|282163363|ref|YP_003355748.1| - 3.4e-15 56.6 0.0 4.8e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|282163363|ref|YP_003355748.1| - 2.4e-06 27.3 0.0 4.4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Choline/ethanolamine kinase RIO1 PF01163.22 gi|282163363|ref|YP_003355748.1| - 0.016 14.8 0.0 0.041 13.5 0.0 1.6 2 0 0 2 2 2 0 RIO1 family Kdo PF06293.14 gi|282163363|ref|YP_003355748.1| - 0.04 13.3 0.0 0.087 12.2 0.0 1.5 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Arc_PepC_II PF06847.11 gi|282163363|ref|YP_003355748.1| - 0.068 13.7 0.0 0.29 11.7 0.0 1.9 2 0 0 2 2 2 0 Archaeal Peptidase A24 C-terminus Type II HAD_2 PF13419.6 gi|282163364|ref|YP_003355749.1| - 1.5e-22 80.6 0.0 7.7e-22 78.2 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|282163364|ref|YP_003355749.1| - 2.2e-09 37.2 0.0 3.9e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|282163364|ref|YP_003355749.1| - 2.1e-07 31.4 0.0 4.6e-07 30.3 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Nitrate_red_del PF02613.15 gi|282163364|ref|YP_003355749.1| - 0.15 12.1 0.0 0.33 11.0 0.0 1.5 1 0 0 1 1 1 0 Nitrate reductase delta subunit PhoU PF01895.19 gi|282163365|ref|YP_003355750.1| - 1.9e-30 105.1 7.5 8e-15 55.1 1.1 2.1 2 0 0 2 2 2 2 PhoU domain DUF86 PF01934.17 gi|282163365|ref|YP_003355750.1| - 0.088 12.7 0.8 3.2 7.6 0.8 2.5 1 1 0 1 1 1 0 Protein of unknown function DUF86 CBS PF00571.28 gi|282163366|ref|YP_003355751.1| - 2.4e-25 88.7 4.8 3.1e-13 49.9 0.5 2.1 2 0 0 2 2 2 2 CBS domain PTPS PF01242.19 gi|282163367|ref|YP_003355752.1| - 3.3e-25 88.4 0.0 4.1e-25 88.1 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Fer4_14 PF13394.6 gi|282163368|ref|YP_003355753.1| - 1.9e-13 50.6 0.1 3.8e-13 49.6 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|282163368|ref|YP_003355753.1| - 1.4e-09 38.4 0.1 7.8e-09 35.9 0.0 1.9 1 1 1 2 2 2 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|282163368|ref|YP_003355753.1| - 1.7e-09 38.3 0.1 3.5e-09 37.2 0.1 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Terminase_3C PF17288.2 gi|282163368|ref|YP_003355753.1| - 0.06 13.7 0.0 0.094 13.1 0.0 1.3 1 0 0 1 1 1 0 Terminase RNAseH like domain DUF366 PF04017.12 gi|282163369|ref|YP_003355754.1| - 8.5e-72 240.5 0.2 9.5e-72 240.3 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) QueC PF06508.13 gi|282163370|ref|YP_003355755.1| - 2.1e-57 194.0 0.0 2.4e-57 193.8 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|282163370|ref|YP_003355755.1| - 0.00057 19.5 0.9 0.69 9.5 0.2 2.5 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.17 gi|282163370|ref|YP_003355755.1| - 0.00066 18.9 0.0 0.00085 18.5 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|282163370|ref|YP_003355755.1| - 0.014 14.2 0.0 0.02 13.7 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase PIN_2 PF10130.9 gi|282163370|ref|YP_003355755.1| - 0.023 14.9 0.0 0.034 14.4 0.0 1.2 1 0 0 1 1 1 0 PIN domain Asn_synthase PF00733.21 gi|282163370|ref|YP_003355755.1| - 0.1 12.2 0.0 0.44 10.2 0.0 1.8 2 0 0 2 2 2 0 Asparagine synthase Peptidase_M50B PF13398.6 gi|282163372|ref|YP_003355757.1| - 0.029 14.0 8.4 0.051 13.2 8.4 1.4 1 1 0 1 1 1 0 Peptidase M50B-like Acetyltransf_1 PF00583.25 gi|282163373|ref|YP_003355758.1| - 6e-19 68.4 0.0 7.6e-19 68.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|282163373|ref|YP_003355758.1| - 2.6e-17 62.9 0.1 3.1e-17 62.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|282163373|ref|YP_003355758.1| - 4.8e-11 42.9 0.0 7e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|282163373|ref|YP_003355758.1| - 1.3e-10 41.1 0.0 2e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|282163373|ref|YP_003355758.1| - 2.4e-06 27.8 0.1 4.4e-06 26.9 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|282163373|ref|YP_003355758.1| - 9.1e-06 25.4 0.0 2.1e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|282163373|ref|YP_003355758.1| - 1.3e-05 25.2 0.0 3.1e-05 24.1 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|282163373|ref|YP_003355758.1| - 2.8e-05 24.8 0.0 5e-05 24.0 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|282163373|ref|YP_003355758.1| - 0.00075 19.7 0.1 0.0013 18.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|282163373|ref|YP_003355758.1| - 0.0091 16.1 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 gi|282163373|ref|YP_003355758.1| - 0.02 14.3 0.0 0.11 12.0 0.0 2.1 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_13 PF13880.6 gi|282163373|ref|YP_003355758.1| - 0.043 13.8 0.0 0.13 12.3 0.0 1.7 1 1 0 1 1 1 0 ESCO1/2 acetyl-transferase Histidinol_dh PF00815.20 gi|282163374|ref|YP_003355759.1| - 9.3e-160 532.1 1.8 1.1e-159 531.8 1.8 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase tRNA-synt_2 PF00152.20 gi|282163375|ref|YP_003355760.1| - 8.9e-87 291.1 0.1 1.1e-86 290.8 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|282163375|ref|YP_003355760.1| - 2.9e-14 52.8 0.1 5.4e-14 51.9 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|282163375|ref|YP_003355760.1| - 0.094 12.9 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|282163375|ref|YP_003355760.1| - 0.16 11.4 0.1 0.6 9.5 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) Transglut_core PF01841.19 gi|282163376|ref|YP_003355761.1| - 3.3e-05 24.3 0.0 6.3e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF3959 PF13105.6 gi|282163377|ref|YP_003355762.1| - 0.016 14.7 3.2 0.018 14.6 3.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3959) FeoB_associated PF12669.7 gi|282163377|ref|YP_003355762.1| - 0.81 10.1 11.1 2.9 8.4 1.1 2.2 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DUF3262 PF11660.8 gi|282163377|ref|YP_003355762.1| - 7.5 7.0 11.7 1.1e+02 3.3 12.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3262) GXGXG PF01493.19 gi|282163378|ref|YP_003355763.1| - 4.5e-40 137.3 12.7 5.4e-40 137.0 12.7 1.1 1 0 0 1 1 1 1 GXGXG motif Glu_synthase PF01645.17 gi|282163379|ref|YP_003355764.1| - 4.7e-137 457.0 0.0 4.7e-137 457.0 0.0 1.4 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|282163379|ref|YP_003355764.1| - 1.7e-17 63.8 0.0 1e-08 35.0 0.1 2.3 2 0 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.18 gi|282163379|ref|YP_003355764.1| - 1.5e-10 40.7 9.4 4.2e-08 32.6 8.2 2.8 2 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|282163379|ref|YP_003355764.1| - 1.8e-09 37.1 4.9 5.8e-08 32.1 6.3 2.3 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4_10 PF13237.6 gi|282163379|ref|YP_003355764.1| - 6.7e-07 29.3 13.8 0.00074 19.6 0.8 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282163379|ref|YP_003355764.1| - 6.2e-06 25.8 12.6 3.8e-05 23.3 2.7 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain His_biosynth PF00977.21 gi|282163379|ref|YP_003355764.1| - 2.8e-05 23.7 0.1 6.1e-05 22.6 0.1 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_8 PF13183.6 gi|282163379|ref|YP_003355764.1| - 0.00019 21.8 9.5 0.19 12.2 0.1 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282163379|ref|YP_003355764.1| - 0.00028 21.0 13.2 0.00028 21.0 13.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282163379|ref|YP_003355764.1| - 0.00035 21.1 20.2 0.013 16.1 16.6 3.3 2 1 2 4 4 4 3 4Fe-4S dicluster domain NMO PF03060.15 gi|282163379|ref|YP_003355764.1| - 0.00053 19.5 4.0 0.00053 19.5 4.0 1.7 2 0 0 2 2 2 1 Nitronate monooxygenase Fer4_9 PF13187.6 gi|282163379|ref|YP_003355764.1| - 0.0006 19.9 15.0 0.0006 19.9 15.0 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282163379|ref|YP_003355764.1| - 0.0026 18.7 16.3 0.0067 17.3 0.3 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|282163379|ref|YP_003355764.1| - 0.0035 17.3 2.2 0.0035 17.3 2.2 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282163379|ref|YP_003355764.1| - 0.0083 16.6 9.9 1.1 9.8 0.3 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain ThiG PF05690.14 gi|282163379|ref|YP_003355764.1| - 0.012 15.0 1.0 0.022 14.1 1.0 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|282163379|ref|YP_003355764.1| - 0.087 12.0 1.2 0.22 10.7 0.4 1.9 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Dus PF01207.17 gi|282163379|ref|YP_003355764.1| - 0.11 11.6 2.9 0.25 10.4 2.9 1.6 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) Fer4_2 PF12797.7 gi|282163379|ref|YP_003355764.1| - 0.12 12.5 25.8 0.1 12.7 3.0 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain DUF865 PF05906.11 gi|282163379|ref|YP_003355764.1| - 0.13 12.1 0.1 0.32 10.8 0.1 1.6 1 0 0 1 1 1 0 Herpesvirus-7 repeat of unknown function (DUF865) PcrB PF01884.17 gi|282163379|ref|YP_003355764.1| - 0.16 11.4 2.7 0.32 10.4 1.4 2.0 1 1 1 2 2 2 0 PcrB family GATase_2 PF00310.21 gi|282163380|ref|YP_003355765.1| - 1.2e-12 47.3 0.0 1.1e-10 40.9 0.0 2.1 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|282163380|ref|YP_003355765.1| - 2.7e-06 27.6 0.0 2.1e-05 24.7 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|282163380|ref|YP_003355765.1| - 0.0019 18.1 0.0 0.33 10.9 0.0 2.3 2 0 0 2 2 2 2 Glutamine amidotransferase domain DNA_topoisoIV PF00521.20 gi|282163381|ref|YP_003355766.1| - 3e-161 537.1 0.2 5.1e-161 536.3 0.0 1.4 2 0 0 2 2 2 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|282163381|ref|YP_003355766.1| - 9.6e-72 236.3 14.4 2.2e-14 52.7 0.2 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller WD40_like PF17005.5 gi|282163381|ref|YP_003355766.1| - 0.27 10.5 4.1 3.6 6.8 0.8 2.9 3 0 0 3 3 3 0 WD40-like domain DNA_gyraseB PF00204.25 gi|282163382|ref|YP_003355767.1| - 9.7e-64 214.0 0.7 2e-63 213.0 0.7 1.5 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|282163382|ref|YP_003355767.1| - 8.5e-30 102.7 0.2 1.9e-29 101.6 0.2 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|282163382|ref|YP_003355767.1| - 1.1e-22 80.6 0.1 2.9e-22 79.3 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|282163382|ref|YP_003355767.1| - 1.8e-17 63.4 0.0 6.2e-17 61.7 0.0 2.0 2 0 0 2 2 2 1 Toprim domain HATPase_c_3 PF13589.6 gi|282163382|ref|YP_003355767.1| - 7.9e-05 22.5 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S4 PF01479.25 gi|282163383|ref|YP_003355768.1| - 5.3e-14 51.7 1.0 1.2e-13 50.5 0.4 2.0 2 0 0 2 2 2 1 S4 domain FtsJ PF01728.19 gi|282163383|ref|YP_003355768.1| - 9.2e-07 29.1 0.0 1.5e-06 28.5 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 gi|282163383|ref|YP_003355768.1| - 1.6e-05 24.8 0.0 2.1e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain S4_2 PF13275.6 gi|282163383|ref|YP_003355768.1| - 5e-05 23.0 0.2 0.00013 21.7 0.0 1.8 2 0 0 2 2 2 1 S4 domain Methyltransf_25 PF13649.6 gi|282163383|ref|YP_003355768.1| - 6.5e-05 23.6 0.0 0.00011 22.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.17 gi|282163383|ref|YP_003355768.1| - 0.016 14.6 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase domain Methyltransf_11 PF08241.12 gi|282163383|ref|YP_003355768.1| - 0.017 15.7 0.0 0.033 14.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282163383|ref|YP_003355768.1| - 0.019 15.7 0.0 0.03 15.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.17 gi|282163383|ref|YP_003355768.1| - 0.043 12.9 0.0 0.059 12.5 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin TyrRSs_C PF16714.5 gi|282163383|ref|YP_003355768.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain ATP19 PF11022.8 gi|282163384|ref|YP_003355769.1| - 0.1 13.0 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 ATP synthase subunit K DUF3343 PF11823.8 gi|282163384|ref|YP_003355769.1| - 0.12 11.8 0.3 0.35 10.3 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3343) DUF362 PF04015.12 gi|282163385|ref|YP_003355770.1| - 4.8e-42 144.5 0.0 6.6e-42 144.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Inhibitor_I42 PF09394.10 gi|282163386|ref|YP_003355771.1| - 5.1e-25 87.7 1.6 6.3e-25 87.4 1.6 1.1 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 Fer4 PF00037.27 gi|282163387|ref|YP_003355772.1| - 1.9e-13 49.6 12.0 7.1e-08 31.9 2.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282163387|ref|YP_003355772.1| - 2.9e-10 40.6 26.8 8.6e-07 29.5 15.2 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282163387|ref|YP_003355772.1| - 1.1e-09 37.7 11.4 2.8e-06 27.1 2.2 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282163387|ref|YP_003355772.1| - 1.8e-09 37.3 10.1 1.1e-06 28.4 1.2 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282163387|ref|YP_003355772.1| - 1.9e-09 37.6 12.2 1.9e-09 37.6 12.2 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282163387|ref|YP_003355772.1| - 4.8e-08 33.0 12.6 4.8e-08 33.0 12.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282163387|ref|YP_003355772.1| - 4.5e-07 30.7 15.5 0.00053 20.9 2.0 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|282163387|ref|YP_003355772.1| - 1.2e-05 25.7 15.7 0.0011 19.3 0.9 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282163387|ref|YP_003355772.1| - 1.4e-05 25.1 21.3 0.00044 20.3 3.5 2.5 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282163387|ref|YP_003355772.1| - 4e-05 24.1 13.5 0.0045 17.5 13.5 2.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|282163387|ref|YP_003355772.1| - 9.6e-05 22.6 11.0 0.00078 19.8 2.3 3.2 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282163387|ref|YP_003355772.1| - 0.00012 22.5 13.0 0.0043 17.6 2.5 2.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282163387|ref|YP_003355772.1| - 0.00099 19.8 11.5 0.0031 18.2 1.1 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|282163387|ref|YP_003355772.1| - 0.0054 17.6 0.6 0.0054 17.6 0.6 2.5 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282163387|ref|YP_003355772.1| - 0.025 14.8 12.8 0.36 11.0 2.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|282163387|ref|YP_003355772.1| - 0.16 13.0 6.9 0.16 13.0 6.9 3.4 4 1 0 4 4 2 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|282163387|ref|YP_003355772.1| - 0.21 11.7 5.1 0.34 11.1 5.1 1.4 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S CdhD PF03599.16 gi|282163388|ref|YP_003355773.1| - 2.4e-16 59.5 0.0 2.9e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit MazE_antitoxin PF04014.18 gi|282163389|ref|YP_003355774.1| - 3.8e-06 26.7 0.1 5.3e-06 26.2 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin eIF-1a PF01176.19 gi|282163389|ref|YP_003355774.1| - 0.08 12.8 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Thump_like PF18096.1 gi|282163389|ref|YP_003355774.1| - 0.1 12.5 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 THUMP domain-like PIN PF01850.21 gi|282163390|ref|YP_003355775.1| - 0.0073 16.8 0.0 0.0083 16.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|282163391|ref|YP_003355776.1| - 2.2e-11 43.4 2.6 2.4e-11 43.3 0.5 1.9 1 1 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|282163391|ref|YP_003355776.1| - 1.7e-05 25.2 0.0 1.9e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin UTRA PF07702.13 gi|282163391|ref|YP_003355776.1| - 0.072 12.9 0.0 0.075 12.9 0.0 1.1 1 0 0 1 1 1 0 UTRA domain THUMP PF02926.17 gi|282163392|ref|YP_003355777.1| - 1.6e-07 31.6 0.0 3.1e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|282163392|ref|YP_003355777.1| - 0.00048 20.4 1.5 0.00048 20.4 1.5 2.5 3 0 0 3 3 3 1 DnaJ central domain zf-RING_10 PF16685.5 gi|282163392|ref|YP_003355777.1| - 0.64 10.2 2.8 1.5 9.0 0.9 2.4 3 0 0 3 3 3 0 zinc RING finger of MSL2 Ribosomal_L21e PF01157.18 gi|282163393|ref|YP_003355778.1| - 3.4e-36 123.1 0.7 3.8e-36 123.0 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|282163394|ref|YP_003355779.1| - 1e-09 38.7 2.4 1.2e-09 38.5 2.4 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF655 PF04919.12 gi|282163395|ref|YP_003355780.1| - 4.5e-68 228.8 2.0 5.1e-68 228.6 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|282163395|ref|YP_003355780.1| - 0.001 19.3 0.0 0.0026 18.0 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|282163395|ref|YP_003355780.1| - 0.0014 18.8 0.0 0.0041 17.3 0.0 1.7 1 1 1 2 2 2 1 Helix-hairpin-helix motif RrnaAD PF00398.20 gi|282163396|ref|YP_003355781.1| - 9.5e-57 192.1 0.0 1.2e-56 191.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|282163396|ref|YP_003355781.1| - 4.1e-09 37.0 0.0 7.4e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282163396|ref|YP_003355781.1| - 1.3e-06 29.0 0.0 2.2e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282163396|ref|YP_003355781.1| - 3.8e-06 26.8 0.0 5.3e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163396|ref|YP_003355781.1| - 0.00014 21.7 0.0 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|282163396|ref|YP_003355781.1| - 0.0035 16.5 0.0 0.0062 15.7 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase MTS PF05175.14 gi|282163396|ref|YP_003355781.1| - 0.0067 16.0 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|282163396|ref|YP_003355781.1| - 0.018 15.7 0.0 0.032 15.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|282163396|ref|YP_003355781.1| - 0.038 14.1 0.0 0.059 13.5 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase Met_10 PF02475.16 gi|282163396|ref|YP_003355781.1| - 0.043 13.6 0.1 0.062 13.0 0.1 1.3 1 0 0 1 1 1 0 Met-10+ like-protein PCMT PF01135.19 gi|282163396|ref|YP_003355781.1| - 0.076 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|282163396|ref|YP_003355781.1| - 0.091 12.4 0.0 0.26 10.9 0.0 1.7 2 0 0 2 2 2 0 Nodulation protein S (NodS) DUF3419 PF11899.8 gi|282163396|ref|YP_003355781.1| - 0.13 11.4 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) Methyltransf_32 PF13679.6 gi|282163396|ref|YP_003355781.1| - 0.16 12.0 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|282163396|ref|YP_003355781.1| - 0.18 11.4 0.0 0.27 10.8 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.14 gi|282163397|ref|YP_003355782.1| - 2.3e-10 40.3 0.0 8.9e-08 31.9 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase small domain PrmA PF06325.13 gi|282163397|ref|YP_003355782.1| - 3.4e-07 29.9 0.2 7.5e-07 28.8 0.1 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|282163397|ref|YP_003355782.1| - 9.1e-07 29.5 0.0 5.8e-05 23.7 0.0 2.7 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282163397|ref|YP_003355782.1| - 1.1e-06 29.2 0.0 1.1e-05 26.0 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163397|ref|YP_003355782.1| - 5.2e-06 26.4 0.0 6.8e-05 22.8 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282163397|ref|YP_003355782.1| - 0.00056 20.6 0.0 0.012 16.3 0.0 2.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282163397|ref|YP_003355782.1| - 0.0012 18.7 0.0 0.0028 17.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|282163397|ref|YP_003355782.1| - 0.0067 16.2 0.0 0.0094 15.7 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase MetW PF07021.12 gi|282163397|ref|YP_003355782.1| - 0.026 14.1 0.0 0.07 12.7 0.0 1.6 2 0 0 2 2 2 0 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|282163397|ref|YP_003355782.1| - 0.033 13.9 0.0 0.085 12.6 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.12 gi|282163397|ref|YP_003355782.1| - 0.042 12.9 0.0 0.08 12.0 0.0 1.4 2 0 0 2 2 2 0 DREV methyltransferase RrnaAD PF00398.20 gi|282163397|ref|YP_003355782.1| - 0.061 12.4 0.0 0.093 11.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|282163397|ref|YP_003355782.1| - 0.099 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Carb_kinase PF01256.17 gi|282163398|ref|YP_003355783.1| - 2.9e-48 164.5 0.2 2.9e-48 164.5 0.2 1.6 2 0 0 2 2 2 1 Carbohydrate kinase YjeF_N PF03853.15 gi|282163398|ref|YP_003355783.1| - 1e-42 145.9 0.4 2.6e-42 144.6 0.0 1.8 3 0 0 3 3 3 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.12 gi|282163398|ref|YP_003355783.1| - 0.00091 18.7 0.0 0.0021 17.5 0.0 1.5 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase HK PF02110.15 gi|282163398|ref|YP_003355783.1| - 0.0047 16.3 0.1 0.0083 15.5 0.1 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family PfkB PF00294.24 gi|282163398|ref|YP_003355783.1| - 0.017 14.4 0.3 0.017 14.4 0.3 1.9 2 0 0 2 2 2 0 pfkB family carbohydrate kinase MoaC PF01967.21 gi|282163399|ref|YP_003355784.1| - 7.8e-48 162.0 7.2 8.9e-48 161.8 7.2 1.0 1 0 0 1 1 1 1 MoaC family Cu2_monoox_C PF03712.15 gi|282163399|ref|YP_003355784.1| - 0.06 12.9 0.1 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 Copper type II ascorbate-dependent monooxygenase, C-terminal domain Tissue_fac PF01108.17 gi|282163399|ref|YP_003355784.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Tissue factor SpoU_methylase PF00588.19 gi|282163400|ref|YP_003355785.1| - 6.6e-33 113.9 0.0 8.6e-33 113.5 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|282163400|ref|YP_003355785.1| - 0.0022 17.9 0.0 0.0044 16.9 0.0 1.6 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase Metallophos PF00149.28 gi|282163401|ref|YP_003355786.1| - 8.6e-17 62.3 0.1 1.7e-16 61.4 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|282163401|ref|YP_003355786.1| - 1.2e-16 61.4 0.0 2e-16 60.7 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|282163401|ref|YP_003355786.1| - 2.8e-09 36.7 0.9 2.9e-08 33.4 0.9 2.3 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily UPF0047 PF01894.17 gi|282163402|ref|YP_003355787.1| - 1.7e-35 121.6 0.0 2e-35 121.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Desulfoferrodox PF01880.18 gi|282163403|ref|YP_003355788.1| - 2.1e-28 98.7 0.0 2.6e-28 98.5 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 gi|282163403|ref|YP_003355788.1| - 0.00025 21.2 0.0 0.00033 20.8 0.0 1.2 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY CarboxypepD_reg PF13620.6 gi|282163404|ref|YP_003355789.1| - 3.4e-09 36.8 1.2 4.4e-08 33.3 0.6 2.7 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|282163404|ref|YP_003355789.1| - 1e-06 28.6 1.0 0.031 14.3 0.0 3.1 2 1 0 2 2 2 2 Bacterial Ig-like domain (group 1) Dioxygenase_C PF00775.21 gi|282163404|ref|YP_003355789.1| - 0.00037 20.0 0.2 0.009 15.5 0.1 2.2 2 0 0 2 2 2 1 Dioxygenase SdrD_B PF17210.3 gi|282163404|ref|YP_003355789.1| - 0.0013 18.9 0.3 0.0029 17.8 0.3 1.5 1 0 0 1 1 1 1 SdrD B-like domain tRNA-synt_1g PF09334.11 gi|282163406|ref|YP_003355791.1| - 7.9e-147 489.1 0.1 9.8e-147 488.8 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|282163406|ref|YP_003355791.1| - 1.1e-26 92.7 0.7 2.4e-26 91.6 0.7 1.6 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|282163406|ref|YP_003355791.1| - 3e-20 72.0 0.2 3.4e-10 38.8 0.1 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|282163406|ref|YP_003355791.1| - 7.2e-12 45.3 0.0 6.8e-07 28.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|282163406|ref|YP_003355791.1| - 2.9e-11 43.6 0.7 4.7e-11 42.9 0.2 1.7 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|282163406|ref|YP_003355791.1| - 0.00033 19.7 0.0 0.13 11.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) DZR PF12773.7 gi|282163406|ref|YP_003355791.1| - 1.7 8.7 6.3 6.7 6.8 6.3 2.0 1 1 0 1 1 1 0 Double zinc ribbon Na_Ala_symp PF01235.17 gi|282163407|ref|YP_003355792.1| - 1.8e-145 485.2 28.5 2.5e-145 484.7 28.5 1.0 1 0 0 1 1 1 1 Sodium:alanine symporter family MFS_1 PF07690.16 gi|282163408|ref|YP_003355793.1| - 1.4e-41 142.7 48.0 1.2e-22 80.4 23.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|282163408|ref|YP_003355793.1| - 6.1e-14 51.7 24.0 1.7e-09 37.1 13.1 2.0 1 1 1 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|282163408|ref|YP_003355793.1| - 4e-10 38.7 11.7 1.9e-08 33.1 1.7 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector LacY_symp PF01306.19 gi|282163408|ref|YP_003355793.1| - 0.0026 16.6 6.1 0.0026 16.6 6.1 2.3 2 0 0 2 2 2 1 LacY proton/sugar symporter Sugar_tr PF00083.24 gi|282163408|ref|YP_003355793.1| - 0.096 11.5 37.2 0.064 12.1 17.3 2.8 1 1 1 3 3 3 0 Sugar (and other) transporter Radical_SAM PF04055.21 gi|282163409|ref|YP_003355794.1| - 1.6e-20 74.1 0.0 2.4e-20 73.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|282163409|ref|YP_003355794.1| - 1.1e-05 25.8 1.2 1.6e-05 25.2 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|282163409|ref|YP_003355794.1| - 0.00013 22.4 1.7 0.00013 22.4 1.7 2.2 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|282163409|ref|YP_003355794.1| - 0.0052 16.9 0.0 0.009 16.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Translin PF01997.16 gi|282163412|ref|YP_003355797.1| - 1.7e-06 28.1 0.0 2.9e-05 24.1 0.0 2.0 1 1 1 2 2 2 1 Translin family Desulfoferrodox PF01880.18 gi|282163413|ref|YP_003355798.1| - 0.0019 18.7 0.0 0.0059 17.2 0.0 1.8 1 0 0 1 1 1 1 Desulfoferrodoxin Wyosine_form PF08608.12 gi|282163414|ref|YP_003355799.1| - 5.7e-22 77.8 0.0 1.1e-21 76.9 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|282163414|ref|YP_003355799.1| - 5.1e-21 75.8 1.2 4.1e-20 72.8 0.4 2.3 2 1 0 2 2 2 1 Radical SAM superfamily Hydrolase_6 PF13344.6 gi|282163414|ref|YP_003355799.1| - 0.015 15.4 0.0 0.033 14.3 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|282163414|ref|YP_003355799.1| - 0.034 14.2 0.0 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|282163414|ref|YP_003355799.1| - 0.11 12.8 0.0 0.25 11.6 0.0 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF2298 PF10060.9 gi|282163415|ref|YP_003355800.1| - 1.6e-07 30.5 11.6 1.6e-07 30.5 11.6 4.1 3 1 0 3 3 3 2 Uncharacterized membrane protein (DUF2298) Dpy19 PF10034.9 gi|282163415|ref|YP_003355800.1| - 0.00012 20.5 0.1 0.00012 20.5 0.1 2.6 2 1 0 3 3 3 1 Q-cell neuroblast polarisation DUF2953 PF11167.8 gi|282163416|ref|YP_003355801.1| - 0.073 13.2 0.3 0.073 13.2 0.3 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) NDUF_B4 PF07225.12 gi|282163418|ref|YP_003355803.1| - 0.15 12.0 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) H2TH PF06831.14 gi|282163419|ref|YP_003355804.1| - 1.1e-20 73.4 0.0 1.8e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain Fapy_DNA_glyco PF01149.24 gi|282163419|ref|YP_003355804.1| - 2.9e-16 60.1 0.0 4.7e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase N-terminal domain zf-FPG_IleRS PF06827.14 gi|282163419|ref|YP_003355804.1| - 6.7e-10 38.6 2.3 1.4e-09 37.7 2.3 1.6 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.6 gi|282163419|ref|YP_003355804.1| - 0.0018 17.5 2.5 0.0032 16.8 2.5 1.4 1 0 0 1 1 1 1 Transcription factor zinc-finger zinc-ribbons_6 PF07191.12 gi|282163419|ref|YP_003355804.1| - 0.0019 18.2 0.2 0.0029 17.6 0.2 1.2 1 0 0 1 1 1 1 zinc-ribbons FbpA PF05833.11 gi|282163419|ref|YP_003355804.1| - 0.011 14.5 0.0 0.015 14.0 0.0 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Zn_ribbon_SprT PF17283.2 gi|282163419|ref|YP_003355804.1| - 0.016 15.1 1.9 0.028 14.3 1.9 1.4 1 0 0 1 1 1 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|282163419|ref|YP_003355804.1| - 0.052 13.6 1.4 0.085 12.9 1.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|282163419|ref|YP_003355804.1| - 0.059 13.4 1.2 0.15 12.1 1.2 1.7 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|282163419|ref|YP_003355804.1| - 0.073 13.2 1.0 0.15 12.2 1.0 1.5 1 0 0 1 1 1 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|282163419|ref|YP_003355804.1| - 0.11 12.5 1.5 0.2 11.6 1.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ribosomal_S13 PF00416.22 gi|282163419|ref|YP_003355804.1| - 0.16 12.4 0.0 0.29 11.5 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S13/S18 C1_2 PF03107.16 gi|282163419|ref|YP_003355804.1| - 0.17 12.2 0.5 0.33 11.3 0.5 1.4 1 0 0 1 1 1 0 C1 domain Lar_restr_allev PF14354.6 gi|282163419|ref|YP_003355804.1| - 0.25 11.7 2.0 0.45 10.9 2.0 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|282163419|ref|YP_003355804.1| - 0.3 10.7 1.6 0.64 9.6 1.6 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding RCC1 PF00415.18 gi|282163420|ref|YP_003355805.1| - 3.6e-36 123.5 9.8 3.4e-08 34.0 0.1 6.0 5 0 0 5 5 5 5 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|282163420|ref|YP_003355805.1| - 5.6e-32 108.9 29.1 2.1e-08 33.8 0.1 7.6 7 0 0 7 7 7 5 Regulator of chromosome condensation (RCC1) repeat HTH_24 PF13412.6 gi|282163420|ref|YP_003355805.1| - 1.1e-09 37.7 0.1 1e-06 28.2 0.0 2.7 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|282163420|ref|YP_003355805.1| - 6.7e-09 35.5 0.0 0.00012 21.9 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|282163420|ref|YP_003355805.1| - 2.4e-06 27.3 0.0 6.1e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PQQ PF01011.21 gi|282163420|ref|YP_003355805.1| - 3.8e-06 26.6 9.8 0.16 11.9 0.0 6.1 6 0 0 6 6 6 2 PQQ enzyme repeat TFIIE_alpha PF02002.17 gi|282163420|ref|YP_003355805.1| - 0.0025 17.6 0.0 0.0063 16.4 0.0 1.6 1 0 0 1 1 1 1 TFIIE alpha subunit PQQ_3 PF13570.6 gi|282163420|ref|YP_003355805.1| - 0.0039 17.6 17.2 5 7.8 0.0 9.3 10 1 0 10 10 9 2 PQQ-like domain HTH_20 PF12840.7 gi|282163420|ref|YP_003355805.1| - 0.0044 17.0 0.0 0.4 10.8 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|282163420|ref|YP_003355805.1| - 0.0091 15.8 0.0 0.03 14.1 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Mga PF08280.11 gi|282163420|ref|YP_003355805.1| - 0.011 15.7 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain MarR_2 PF12802.7 gi|282163420|ref|YP_003355805.1| - 0.013 15.3 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|282163420|ref|YP_003355805.1| - 0.037 14.0 0.0 0.095 12.7 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|282163420|ref|YP_003355805.1| - 0.063 13.6 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.12 gi|282163420|ref|YP_003355805.1| - 0.075 13.0 0.0 0.26 11.3 0.0 1.8 2 0 0 2 2 2 0 HTH domain PAS PF00989.25 gi|282163421|ref|YP_003355806.1| - 2.8e-29 101.4 0.0 1.2e-12 47.8 0.0 4.0 4 1 0 4 4 4 2 PAS fold PAS_4 PF08448.10 gi|282163421|ref|YP_003355806.1| - 1.4e-26 92.9 0.0 3e-14 53.2 0.0 4.0 3 1 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|282163421|ref|YP_003355806.1| - 1.1e-23 83.5 0.0 1.5e-09 38.0 0.0 3.8 4 0 0 4 4 4 2 PAS domain HATPase_c PF02518.26 gi|282163421|ref|YP_003355806.1| - 8.3e-18 64.9 0.0 1.7e-17 63.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|282163421|ref|YP_003355806.1| - 7.7e-14 51.7 0.0 4.8e-07 30.0 0.0 4.3 3 1 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|282163421|ref|YP_003355806.1| - 1e-11 44.6 0.0 1.6e-07 31.2 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|282163421|ref|YP_003355806.1| - 1.2e-05 25.2 0.0 2.4e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|282163421|ref|YP_003355806.1| - 0.01 15.7 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 GHKL domain HATPase_c_3 PF13589.6 gi|282163421|ref|YP_003355806.1| - 0.056 13.3 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|282163421|ref|YP_003355806.1| - 0.083 12.9 1.2 0.2 11.7 0.1 2.2 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Rhodanese PF00581.20 gi|282163422|ref|YP_003355807.1| - 3e-15 56.6 0.0 4.3e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain PAS_3 PF08447.12 gi|282163423|ref|YP_003355808.1| - 4.3e-71 235.3 7.9 1.9e-23 82.6 0.1 5.6 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.7 gi|282163423|ref|YP_003355808.1| - 1.2e-39 134.7 0.0 1.2e-09 38.3 0.0 5.4 5 0 0 5 5 5 5 PAS domain PAS_4 PF08448.10 gi|282163423|ref|YP_003355808.1| - 5.7e-34 116.7 0.2 7e-10 39.1 0.0 5.3 5 0 0 5 5 5 5 PAS fold PAS PF00989.25 gi|282163423|ref|YP_003355808.1| - 5.1e-31 107.0 0.0 2.4e-07 30.7 0.0 6.2 5 1 0 5 5 5 5 PAS fold PAS_8 PF13188.7 gi|282163423|ref|YP_003355808.1| - 9.4e-21 73.4 0.0 4.1e-07 29.9 0.0 4.6 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.26 gi|282163423|ref|YP_003355808.1| - 4.7e-20 72.2 0.1 3e-19 69.6 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|282163423|ref|YP_003355808.1| - 6.6e-05 22.9 0.0 0.00019 21.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|282163423|ref|YP_003355808.1| - 0.0072 16.0 0.0 0.97 9.1 0.0 2.6 2 0 0 2 2 2 1 UPF0242 C-terminal PAS-like domain HATPase_c_3 PF13589.6 gi|282163423|ref|YP_003355808.1| - 0.015 15.2 0.1 0.038 13.8 0.0 1.7 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CopC PF04234.12 gi|282163423|ref|YP_003355808.1| - 0.016 16.3 0.1 1.8 9.7 0.0 2.9 3 0 0 3 3 2 0 CopC domain HATPase_c_5 PF14501.6 gi|282163423|ref|YP_003355808.1| - 0.016 15.1 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 GHKL domain MEKHLA PF08670.11 gi|282163423|ref|YP_003355808.1| - 0.045 13.7 0.0 0.15 12.0 0.0 1.9 1 0 0 1 1 1 0 MEKHLA domain HisKA PF00512.25 gi|282163423|ref|YP_003355808.1| - 0.08 13.0 0.2 0.26 11.4 0.1 2.0 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Mago-bind PF09282.10 gi|282163423|ref|YP_003355808.1| - 0.4 10.6 8.5 8.5 6.3 0.1 4.2 4 0 0 4 4 4 0 Mago binding Abhydrolase_1 PF00561.20 gi|282163424|ref|YP_003355809.1| - 3.4e-09 36.7 0.0 7.8e-06 25.7 0.0 2.0 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|282163424|ref|YP_003355809.1| - 1.1e-08 34.6 0.0 2.5e-08 33.5 0.0 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|282163424|ref|YP_003355809.1| - 1.6e-07 32.2 0.0 1.9e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|282163424|ref|YP_003355809.1| - 0.02 14.4 0.0 0.98 8.8 0.0 2.2 2 0 0 2 2 2 0 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 gi|282163424|ref|YP_003355809.1| - 0.06 13.2 0.0 0.089 12.6 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold Thioesterase PF00975.20 gi|282163424|ref|YP_003355809.1| - 0.11 12.6 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain DUF2920 PF11144.8 gi|282163424|ref|YP_003355809.1| - 0.15 11.2 0.1 0.22 10.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) HxlR PF01638.17 gi|282163425|ref|YP_003355810.1| - 2e-31 107.7 0.4 2.7e-31 107.3 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_12 PF08461.10 gi|282163425|ref|YP_003355810.1| - 0.0013 18.6 0.1 0.0021 18.0 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain PadR PF03551.14 gi|282163425|ref|YP_003355810.1| - 0.0061 16.5 0.1 0.0088 16.0 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|282163425|ref|YP_003355810.1| - 0.014 15.5 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|282163425|ref|YP_003355810.1| - 0.026 14.4 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|282163425|ref|YP_003355810.1| - 0.067 13.1 0.0 0.36 10.7 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.12 gi|282163425|ref|YP_003355810.1| - 0.077 13.2 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|282163425|ref|YP_003355810.1| - 0.1 12.5 0.1 0.32 10.9 0.1 1.7 1 1 0 1 1 1 0 MarR family Tautomerase PF01361.21 gi|282163426|ref|YP_003355811.1| - 2.9e-09 36.7 0.0 3e-09 36.6 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|282163426|ref|YP_003355811.1| - 0.002 18.2 0.0 0.0022 18.1 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Putative_PNPOx PF01243.20 gi|282163427|ref|YP_003355812.1| - 9.3e-17 61.0 0.0 1.2e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF945 PF06097.11 gi|282163428|ref|YP_003355813.1| - 1.6 7.8 5.9 1.9 7.5 5.9 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) LPAM_1 PF08139.12 gi|282163428|ref|YP_003355813.1| - 1.9 9.1 5.8 3.2 8.4 5.8 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Lamprin PF06403.11 gi|282163428|ref|YP_003355813.1| - 4.9 7.1 33.0 0.31 11.0 22.7 2.6 1 1 1 2 2 2 0 Lamprin Peptidase_U4 PF03419.13 gi|282163429|ref|YP_003355814.1| - 0.072 12.4 9.9 0.086 12.1 9.9 1.3 1 0 0 1 1 1 0 Sporulation factor SpoIIGA Caveolin PF01146.17 gi|282163429|ref|YP_003355814.1| - 0.47 10.4 7.6 0.12 12.4 4.1 1.7 1 1 0 1 1 1 0 Caveolin DUF2070 PF09843.9 gi|282163429|ref|YP_003355814.1| - 5.7 5.1 13.3 6.6 4.9 13.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CPBP PF02517.16 gi|282163430|ref|YP_003355815.1| - 2.3e-16 59.9 2.5 2.9e-16 59.6 2.5 1.1 1 0 0 1 1 1 1 CPBP intramembrane metalloprotease PD40 PF07676.12 gi|282163431|ref|YP_003355816.1| - 1.5e-10 40.7 0.1 3.5e-10 39.5 0.1 1.7 1 0 0 1 1 1 1 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|282163432|ref|YP_003355817.1| - 5.5e-07 28.7 0.1 6e-07 28.5 0.1 1.0 1 0 0 1 1 1 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region PD40 PF07676.12 gi|282163432|ref|YP_003355817.1| - 1.1e-06 28.4 2.4 3.3e-05 23.7 0.5 2.5 2 1 0 2 2 2 1 WD40-like Beta Propeller Repeat DUF3748 PF12566.8 gi|282163432|ref|YP_003355817.1| - 0.019 14.9 0.0 0.023 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3748) BNR PF02012.20 gi|282163432|ref|YP_003355817.1| - 0.031 14.2 0.8 0.22 11.7 0.0 2.7 3 0 0 3 3 3 0 BNR/Asp-box repeat Choline_sulf_C PF12411.8 gi|282163432|ref|YP_003355817.1| - 0.076 12.8 1.4 0.16 11.8 0.3 1.9 1 1 1 2 2 2 0 Choline sulfatase enzyme C terminal Hexapep PF00132.24 gi|282163433|ref|YP_003355818.1| - 6.8e-25 85.8 15.7 6.4e-07 28.9 2.2 5.2 3 1 3 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|282163433|ref|YP_003355818.1| - 1.8e-18 66.0 15.5 4.2e-07 29.6 1.5 5.5 5 0 0 5 5 5 5 Hexapeptide repeat of succinyl-transferase DUF3686 PF12458.8 gi|282163433|ref|YP_003355818.1| - 0.012 14.2 0.2 0.016 13.8 0.2 1.1 1 0 0 1 1 1 0 ATPase involved in DNA repair DegT_DnrJ_EryC1 PF01041.17 gi|282163434|ref|YP_003355819.1| - 2.2e-133 445.0 0.0 2.5e-133 444.9 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|282163434|ref|YP_003355819.1| - 5.7e-08 32.4 0.3 2.2e-07 30.5 0.3 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|282163434|ref|YP_003355819.1| - 1.1e-07 30.8 0.0 1.5e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme ComK PF06338.11 gi|282163434|ref|YP_003355819.1| - 0.039 13.6 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 ComK protein OKR_DC_1 PF01276.20 gi|282163434|ref|YP_003355819.1| - 0.044 12.5 0.0 0.079 11.7 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain GFO_IDH_MocA PF01408.22 gi|282163435|ref|YP_003355820.1| - 3.8e-21 76.1 0.0 8.9e-21 74.9 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|282163435|ref|YP_003355820.1| - 0.00034 20.6 0.0 0.00067 19.6 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain CheR_N PF03705.15 gi|282163435|ref|YP_003355820.1| - 0.00061 19.5 0.0 0.0017 18.1 0.0 1.8 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Glycos_transf_2 PF00535.26 gi|282163436|ref|YP_003355821.1| - 1e-26 93.8 0.0 1.9e-25 89.7 0.0 2.5 3 0 0 3 3 3 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282163436|ref|YP_003355821.1| - 2e-05 24.6 0.0 3.6e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|282163436|ref|YP_003355821.1| - 0.00027 21.4 0.0 0.00064 20.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 Polysacc_deac_1 PF01522.21 gi|282163437|ref|YP_003355822.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.6 1 1 0 1 1 1 0 Polysaccharide deacetylase EELM2 PF15863.5 gi|282163437|ref|YP_003355822.1| - 0.084 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Extended EGL-27 and MTA1 homology domain DUF354 PF04007.12 gi|282163438|ref|YP_003355823.1| - 2.7e-17 62.9 0.1 1.7e-16 60.2 0.1 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Polysacc_deac_1 PF01522.21 gi|282163438|ref|YP_003355823.1| - 0.0047 16.8 0.0 0.0099 15.8 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase Epimerase_2 PF02350.19 gi|282163438|ref|YP_003355823.1| - 0.014 14.3 0.0 0.25 10.2 0.0 2.2 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_2 PF13477.6 gi|282163438|ref|YP_003355823.1| - 0.017 15.1 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like Acetyltransf_6 PF13480.7 gi|282163440|ref|YP_003355825.1| - 4.3e-12 46.4 0.0 6.8e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|282163440|ref|YP_003355825.1| - 5.2e-05 22.3 4.3 0.00024 20.1 0.4 2.2 1 1 1 2 2 2 2 FemAB family DUF5601 PF18151.1 gi|282163440|ref|YP_003355825.1| - 0.047 14.0 1.1 0.41 11.0 0.3 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF5601) Glycos_transf_1 PF00534.20 gi|282163441|ref|YP_003355826.1| - 4.8e-34 117.4 0.0 7.5e-34 116.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282163441|ref|YP_003355826.1| - 3.1e-29 102.1 0.0 5.5e-29 101.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|282163441|ref|YP_003355826.1| - 3.1e-28 98.6 0.9 6.4e-28 97.5 0.9 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|282163441|ref|YP_003355826.1| - 2e-14 54.0 0.0 7.5e-14 52.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|282163441|ref|YP_003355826.1| - 3.6e-10 40.5 0.0 7.3e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|282163441|ref|YP_003355826.1| - 8.4e-08 32.5 0.0 1.6e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Laminin_G_3 PF13385.6 gi|282163442|ref|YP_003355827.1| - 1.4e-93 311.0 26.9 1.6e-25 90.0 0.8 4.7 4 0 0 4 4 4 4 Concanavalin A-like lectin/glucanases superfamily Polysacc_deac_1 PF01522.21 gi|282163442|ref|YP_003355827.1| - 8.2e-31 106.5 0.3 3.8e-14 52.6 0.1 2.4 2 0 0 2 2 2 2 Polysaccharide deacetylase CathepsinC_exc PF08773.11 gi|282163442|ref|YP_003355827.1| - 1.1e-11 45.1 2.6 0.045 14.0 0.0 4.0 4 0 0 4 4 3 3 Cathepsin C exclusion domain Sialidase PF02973.16 gi|282163442|ref|YP_003355827.1| - 8.8e-10 38.4 9.4 0.023 14.2 0.1 4.8 4 0 0 4 4 4 3 Sialidase, N-terminal domain Calx-beta PF03160.14 gi|282163442|ref|YP_003355827.1| - 8.8e-09 35.4 0.7 2.1e-08 34.3 0.1 2.0 2 0 0 2 2 2 1 Calx-beta domain DUF1080 PF06439.11 gi|282163442|ref|YP_003355827.1| - 4.2e-08 33.5 0.1 1.7 8.7 0.0 4.3 4 0 0 4 4 4 3 Domain of Unknown Function (DUF1080) DUF2334 PF10096.9 gi|282163442|ref|YP_003355827.1| - 3.1e-06 27.0 0.2 1.3e-05 25.0 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2334) Laminin_G_1 PF00054.23 gi|282163442|ref|YP_003355827.1| - 4.1e-06 27.0 0.0 4.8 7.4 0.0 3.6 3 0 0 3 3 3 3 Laminin G domain DUF5006 PF16397.5 gi|282163442|ref|YP_003355827.1| - 5.3e-05 22.5 0.3 9.4e-05 21.7 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5006) PGAP1 PF07819.13 gi|282163442|ref|YP_003355827.1| - 0.00012 21.9 1.3 7.2 6.3 0.0 3.4 3 0 0 3 3 3 3 PGAP1-like protein Trypan_PARP PF05887.11 gi|282163442|ref|YP_003355827.1| - 0.0026 17.7 20.0 0.0026 17.7 20.0 5.3 4 1 1 5 5 5 2 Procyclic acidic repetitive protein (PARP) GDP_Man_Dehyd PF16363.5 gi|282163443|ref|YP_003355828.1| - 5.4e-78 262.7 0.0 6.5e-78 262.4 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|282163443|ref|YP_003355828.1| - 8.1e-65 218.6 0.0 1e-64 218.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|282163443|ref|YP_003355828.1| - 3.1e-28 98.6 0.0 4.1e-28 98.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|282163443|ref|YP_003355828.1| - 9.4e-25 87.3 0.0 3.7e-24 85.4 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|282163443|ref|YP_003355828.1| - 1.4e-18 67.0 0.0 2e-18 66.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|282163443|ref|YP_003355828.1| - 6.6e-17 61.5 0.4 6.7e-15 54.9 0.4 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|282163443|ref|YP_003355828.1| - 4e-08 33.4 0.0 7.8e-08 32.4 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|282163443|ref|YP_003355828.1| - 0.0043 16.5 0.0 0.028 13.9 0.0 2.0 2 0 0 2 2 2 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|282163443|ref|YP_003355828.1| - 0.028 14.7 0.1 0.044 14.0 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|282163443|ref|YP_003355828.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family DegT_DnrJ_EryC1 PF01041.17 gi|282163444|ref|YP_003355829.1| - 2.6e-143 477.7 0.0 2.9e-143 477.5 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|282163444|ref|YP_003355829.1| - 9.4e-11 41.5 0.0 1.5e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|282163444|ref|YP_003355829.1| - 1.6e-06 27.6 0.6 3.4e-06 26.6 0.7 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|282163444|ref|YP_003355829.1| - 5.6e-06 25.1 0.0 8.7e-06 24.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|282163444|ref|YP_003355829.1| - 2.9e-05 23.2 0.1 5.2e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|282163444|ref|YP_003355829.1| - 0.037 12.8 0.0 0.071 11.8 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Laminin_G_3 PF13385.6 gi|282163445|ref|YP_003355830.1| - 3.8e-27 95.3 0.5 3.8e-27 95.3 0.5 2.9 3 0 0 3 3 3 1 Concanavalin A-like lectin/glucanases superfamily N_BRCA1_IG PF16158.5 gi|282163445|ref|YP_003355830.1| - 2.4e-06 28.2 0.2 6.2e-06 26.9 0.2 1.7 1 0 0 1 1 1 1 Ig-like domain from next to BRCA1 gene DUF4962 PF16332.5 gi|282163445|ref|YP_003355830.1| - 4.3e-05 22.2 1.8 0.00028 19.5 0.8 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4962) Hepar_II_III PF07940.13 gi|282163445|ref|YP_003355830.1| - 0.0011 18.7 0.2 0.0032 17.1 0.1 1.9 2 0 0 2 2 2 1 Heparinase II/III-like protein CARDB PF07705.11 gi|282163445|ref|YP_003355830.1| - 0.0059 16.8 1.1 0.028 14.7 0.3 2.6 2 0 0 2 2 2 1 CARDB Sialidase PF02973.16 gi|282163445|ref|YP_003355830.1| - 0.016 14.7 0.0 0.036 13.6 0.0 1.5 1 0 0 1 1 1 0 Sialidase, N-terminal domain CathepsinC_exc PF08773.11 gi|282163445|ref|YP_003355830.1| - 0.039 14.2 0.0 0.093 13.0 0.0 1.6 1 0 0 1 1 1 0 Cathepsin C exclusion domain Laminin_G_1 PF00054.23 gi|282163445|ref|YP_003355830.1| - 0.13 12.5 0.0 0.31 11.3 0.0 1.5 1 0 0 1 1 1 0 Laminin G domain UDPG_MGDP_dh_N PF03721.14 gi|282163446|ref|YP_003355831.1| - 7.2e-35 120.3 0.0 1.1e-34 119.6 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|282163446|ref|YP_003355831.1| - 1.1e-20 74.0 0.0 3.6e-20 72.3 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|282163446|ref|YP_003355831.1| - 1.5e-20 73.2 0.0 6.5e-20 71.1 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain Polysacc_synt PF01943.17 gi|282163447|ref|YP_003355832.1| - 2.1e-27 96.2 26.8 2.1e-27 96.2 26.8 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|282163447|ref|YP_003355832.1| - 8.4e-20 71.2 18.9 8.4e-20 71.2 18.9 1.9 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|282163447|ref|YP_003355832.1| - 6.1e-12 45.8 38.7 1.7e-11 44.3 13.1 4.3 2 2 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|282163447|ref|YP_003355832.1| - 7.2e-07 29.0 35.6 0.00046 19.9 12.8 2.8 2 1 0 2 2 2 2 MatE MurJ PF03023.14 gi|282163447|ref|YP_003355832.1| - 1.1e-05 24.2 36.2 1.1e-05 24.2 36.2 2.2 1 1 1 2 2 2 1 Lipid II flippase MurJ DUF354 PF04007.12 gi|282163449|ref|YP_003355834.1| - 2.4e-25 89.3 0.3 2.6e-25 89.2 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) UDPG_MGDP_dh_N PF03721.14 gi|282163450|ref|YP_003355835.1| - 4.7e-42 143.7 0.1 1.2e-41 142.4 0.1 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|282163450|ref|YP_003355835.1| - 1.1e-28 99.3 0.0 2e-28 98.4 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|282163450|ref|YP_003355835.1| - 1.7e-28 99.1 0.0 1.9e-27 95.8 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|282163450|ref|YP_003355835.1| - 7.9e-10 39.1 0.0 2.4e-05 24.5 0.0 2.6 2 1 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|282163450|ref|YP_003355835.1| - 0.0071 16.3 0.0 2.3 8.2 0.0 2.5 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_11 PF14833.6 gi|282163450|ref|YP_003355835.1| - 0.0086 16.3 0.0 0.019 15.2 0.0 1.5 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|282163450|ref|YP_003355835.1| - 0.028 13.8 0.9 1.2 8.5 0.1 3.0 3 1 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Hepar_II_III PF07940.13 gi|282163451|ref|YP_003355836.1| - 4.5e-05 23.2 0.0 0.00012 21.8 0.0 1.5 1 1 0 1 1 1 1 Heparinase II/III-like protein DUF4962 PF16332.5 gi|282163451|ref|YP_003355836.1| - 0.00033 19.3 0.0 0.00061 18.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4962) C5-epim_C PF06662.13 gi|282163451|ref|YP_003355836.1| - 0.0096 15.4 1.1 0.023 14.2 0.2 2.1 3 0 0 3 3 3 1 D-glucuronyl C5-epimerase C-terminus DUF1889 PF08986.10 gi|282163451|ref|YP_003355836.1| - 0.1 13.0 0.0 0.36 11.2 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1889) DUF485 PF04341.12 gi|282163452|ref|YP_003355837.1| - 4.3 7.4 11.5 0.56 10.2 4.6 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF485 DUF1616 PF07760.11 gi|282163453|ref|YP_003355838.1| - 1.6e-84 283.8 0.0 1.8e-84 283.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF202 PF02656.15 gi|282163453|ref|YP_003355838.1| - 2.2 8.8 7.5 3.6 8.1 2.4 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF202) DUF4271 PF14093.6 gi|282163453|ref|YP_003355838.1| - 4.8 7.0 10.3 0.52 10.2 2.8 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4271) DUF362 PF04015.12 gi|282163454|ref|YP_003355839.1| - 4e-33 115.4 0.0 2.3e-32 112.9 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF362) SMC_Nse1 PF07574.13 gi|282163454|ref|YP_003355839.1| - 0.16 11.8 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex Dynamitin PF04912.14 gi|282163455|ref|YP_003355840.1| - 0.0094 15.3 0.0 0.011 15.1 0.0 1.1 1 0 0 1 1 1 1 Dynamitin PKcGMP_CC PF16808.5 gi|282163455|ref|YP_003355840.1| - 0.025 14.4 0.6 0.046 13.6 0.6 1.5 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DDE_Tnp_IS66 PF03050.14 gi|282163456|ref|YP_003355841.1| - 1.5e-31 109.9 0.0 2e-31 109.5 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family Transposase_mut PF00872.18 gi|282163457|ref|YP_003355842.1| - 3e-42 144.9 0.0 3.4e-42 144.7 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family Ins_allergen_rp PF06757.13 gi|282163457|ref|YP_003355842.1| - 0.031 14.3 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification Transposase_mut PF00872.18 gi|282163458|ref|YP_003355843.1| - 5.6e-45 153.8 0.0 6.4e-45 153.6 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family DDE_Tnp_IS66 PF03050.14 gi|282163459|ref|YP_003355844.1| - 5.8e-11 42.4 0.0 9e-11 41.8 0.0 1.3 2 0 0 2 2 2 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.6 gi|282163459|ref|YP_003355844.1| - 0.053 13.7 0.1 0.067 13.4 0.1 1.1 1 0 0 1 1 1 0 DDE domain DUF945 PF06097.11 gi|282163460|ref|YP_003355845.1| - 1.6 7.8 5.9 1.9 7.5 5.9 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) LPAM_1 PF08139.12 gi|282163460|ref|YP_003355845.1| - 1.9 9.1 5.8 3.2 8.4 5.8 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Lamprin PF06403.11 gi|282163460|ref|YP_003355845.1| - 4.9 7.1 33.0 0.31 11.0 22.7 2.6 1 1 1 2 2 2 0 Lamprin CxxCxxCC PF03692.15 gi|282163462|ref|YP_003355847.1| - 2.1e-07 31.5 1.2 4.1e-07 30.6 1.2 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain ELFV_dehydrog PF00208.21 gi|282163463|ref|YP_003355848.1| - 1.4e-60 205.0 1.1 1.9e-60 204.6 1.1 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|282163463|ref|YP_003355848.1| - 7.9e-48 161.6 0.0 1.4e-47 160.8 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|282163463|ref|YP_003355848.1| - 0.021 14.2 0.2 0.043 13.2 0.2 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|282163463|ref|YP_003355848.1| - 0.11 12.7 0.6 0.29 11.4 0.2 1.9 1 1 0 1 1 1 0 TrkA-N domain PALP PF00291.25 gi|282163464|ref|YP_003355849.1| - 3.4e-70 236.8 0.7 3.9e-70 236.6 0.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme OmdA PF13376.6 gi|282163465|ref|YP_003355850.1| - 4.5e-15 55.4 3.8 6.4e-15 54.9 0.2 2.4 2 0 0 2 2 2 1 Bacteriocin-protection, YdeI or OmpD-Associated PMD PF10536.9 gi|282163465|ref|YP_003355850.1| - 0.031 13.4 0.0 0.042 13.0 0.0 1.2 1 0 0 1 1 1 0 Plant mobile domain Pox_E6 PF04656.12 gi|282163465|ref|YP_003355850.1| - 0.11 10.9 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 Pox virus E6 protein CbiM PF01891.16 gi|282163466|ref|YP_003355851.1| - 7.4e-39 133.7 19.1 7.4e-39 133.7 19.1 1.8 2 0 0 2 2 2 1 Cobalt uptake substrate-specific transmembrane region ECF_trnsprt PF12822.7 gi|282163466|ref|YP_003355851.1| - 6.6e-05 23.1 25.0 6.6e-05 23.1 25.0 2.3 2 1 1 3 3 3 1 ECF transporter, substrate-specific component TMEM51 PF15345.6 gi|282163466|ref|YP_003355851.1| - 0.11 12.4 0.1 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 Transmembrane protein 51 DUF4131 PF13567.6 gi|282163466|ref|YP_003355851.1| - 0.41 10.3 11.1 0.095 12.3 6.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ABC_tran PF00005.27 gi|282163467|ref|YP_003355852.1| - 1.4e-26 93.7 0.0 1.9e-26 93.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163467|ref|YP_003355852.1| - 5.5e-14 52.7 0.1 6.4e-07 29.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282163467|ref|YP_003355852.1| - 2.3e-10 40.3 0.3 1.9e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282163467|ref|YP_003355852.1| - 4.1e-06 26.4 0.0 7.5e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|282163467|ref|YP_003355852.1| - 5.8e-05 23.0 0.0 0.0008 19.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|282163467|ref|YP_003355852.1| - 0.00014 22.4 0.0 0.0002 21.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|282163467|ref|YP_003355852.1| - 0.00047 20.1 0.1 0.00091 19.2 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|282163467|ref|YP_003355852.1| - 0.0022 18.3 0.0 0.0039 17.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|282163467|ref|YP_003355852.1| - 0.0029 18.0 0.0 0.0037 17.7 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|282163467|ref|YP_003355852.1| - 0.0075 16.4 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|282163467|ref|YP_003355852.1| - 0.015 15.9 0.0 0.03 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|282163467|ref|YP_003355852.1| - 0.024 14.5 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_PrkA PF08298.11 gi|282163467|ref|YP_003355852.1| - 0.036 13.0 0.0 0.061 12.2 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain 5_3_exonuc_N PF02739.16 gi|282163467|ref|YP_003355852.1| - 0.039 13.8 0.1 0.065 13.1 0.1 1.3 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain Mg_chelatase PF01078.21 gi|282163467|ref|YP_003355852.1| - 0.046 13.1 0.0 0.078 12.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.22 gi|282163467|ref|YP_003355852.1| - 0.058 13.0 0.2 0.78 9.3 0.0 2.4 2 1 0 3 3 3 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|282163467|ref|YP_003355852.1| - 0.059 12.7 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.14 gi|282163467|ref|YP_003355852.1| - 0.062 13.3 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|282163467|ref|YP_003355852.1| - 0.079 13.2 0.0 2 8.7 0.0 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.22 gi|282163467|ref|YP_003355852.1| - 0.087 13.2 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|282163467|ref|YP_003355852.1| - 0.11 11.6 0.0 0.6 9.3 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain IstB_IS21 PF01695.17 gi|282163467|ref|YP_003355852.1| - 0.12 12.1 0.1 0.66 9.7 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|282163467|ref|YP_003355852.1| - 0.12 11.9 0.0 1.1 8.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|282163467|ref|YP_003355852.1| - 0.14 11.8 0.0 0.32 10.6 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|282163467|ref|YP_003355852.1| - 0.14 11.9 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain BCA_ABC_TP_C PF12399.8 gi|282163467|ref|YP_003355852.1| - 0.16 11.9 0.1 0.38 10.7 0.1 1.7 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_28 PF13521.6 gi|282163467|ref|YP_003355852.1| - 0.2 11.9 0.2 0.44 10.8 0.1 1.6 2 0 0 2 2 1 0 AAA domain CbiQ PF02361.16 gi|282163468|ref|YP_003355853.1| - 1.9e-29 102.8 16.6 2.7e-29 102.3 16.6 1.2 1 0 0 1 1 1 1 Cobalt transport protein Fe_dep_repr_C PF02742.15 gi|282163469|ref|YP_003355854.1| - 5.3e-18 64.9 0.0 1.2e-17 63.7 0.0 1.6 2 0 0 2 2 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|282163469|ref|YP_003355854.1| - 7.9e-11 42.0 0.0 1.3e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|282163469|ref|YP_003355854.1| - 2e-07 30.8 0.0 7.6e-07 28.9 0.0 1.9 2 1 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|282163469|ref|YP_003355854.1| - 0.00073 19.3 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|282163469|ref|YP_003355854.1| - 0.0034 17.2 0.0 0.014 15.3 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|282163469|ref|YP_003355854.1| - 0.012 15.5 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|282163469|ref|YP_003355854.1| - 0.012 15.5 0.0 0.045 13.7 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|282163469|ref|YP_003355854.1| - 0.014 15.7 0.0 0.035 14.5 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator MarR PF01047.22 gi|282163469|ref|YP_003355854.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|282163469|ref|YP_003355854.1| - 0.019 14.9 0.0 0.058 13.3 0.0 1.7 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.6 gi|282163469|ref|YP_003355854.1| - 0.029 13.9 0.0 0.09 12.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|282163469|ref|YP_003355854.1| - 0.053 13.7 0.0 0.44 10.7 0.0 2.2 1 1 2 3 3 3 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|282163469|ref|YP_003355854.1| - 0.079 12.7 0.0 0.86 9.4 0.0 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Phage_terminase PF10668.9 gi|282163469|ref|YP_003355854.1| - 0.083 12.9 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Phage terminase small subunit RuvB_C PF05491.13 gi|282163469|ref|YP_003355854.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.7 1 1 0 1 1 1 0 RuvB C-terminal winged helix domain FaeA PF04703.12 gi|282163469|ref|YP_003355854.1| - 0.16 12.3 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein FeoC PF09012.10 gi|282163469|ref|YP_003355854.1| - 0.5 10.5 3.4 0.63 10.2 0.0 2.4 2 0 0 2 2 1 0 FeoC like transcriptional regulator DUF2298 PF10060.9 gi|282163471|ref|YP_003355856.1| - 3.5e-06 26.0 10.3 3.5e-06 26.0 10.3 2.8 2 1 1 3 3 3 2 Uncharacterized membrane protein (DUF2298) DUF1616 PF07760.11 gi|282163471|ref|YP_003355856.1| - 8.6 5.6 17.6 0.038 13.4 7.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) NTP_transferase PF00483.23 gi|282163472|ref|YP_003355857.1| - 2.4e-43 148.5 0.0 3.2e-43 148.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|282163472|ref|YP_003355857.1| - 1e-14 53.6 27.5 6.4e-08 32.0 2.8 4.9 2 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|282163472|ref|YP_003355857.1| - 1.8e-13 51.2 0.0 2.4e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|282163472|ref|YP_003355857.1| - 2.4e-07 30.4 2.4 2.4e-07 30.4 2.4 5.3 5 1 0 5 5 5 1 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|282163472|ref|YP_003355857.1| - 7.3e-05 22.6 0.0 0.007 16.1 0.0 2.4 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|282163472|ref|YP_003355857.1| - 0.00093 17.5 1.3 0.0016 16.7 1.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|282163472|ref|YP_003355857.1| - 0.2 10.6 0.3 1.9 7.4 0.1 2.0 1 1 1 2 2 2 0 L-fucokinase PGM_PMM_I PF02878.16 gi|282163473|ref|YP_003355858.1| - 2.8e-38 130.8 0.0 5.1e-38 129.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|282163473|ref|YP_003355858.1| - 1.6e-26 92.9 0.1 3.8e-26 91.7 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|282163473|ref|YP_003355858.1| - 2.2e-16 60.0 0.0 3.8e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|282163473|ref|YP_003355858.1| - 1.9e-11 44.0 0.1 4.7e-11 42.7 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|282163473|ref|YP_003355858.1| - 0.0067 16.6 0.2 1.1 9.5 0.1 2.5 2 0 0 2 2 2 1 Damage-inducible protein CinA KH domain SIS PF01380.22 gi|282163474|ref|YP_003355859.1| - 1.1e-56 190.3 3.7 2.4e-32 111.5 0.7 2.6 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|282163474|ref|YP_003355859.1| - 6.7e-22 78.1 0.1 1.4e-21 77.1 0.1 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|282163474|ref|YP_003355859.1| - 9.5e-19 67.5 0.0 1.7e-18 66.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|282163474|ref|YP_003355859.1| - 0.00091 18.2 0.1 0.0015 17.5 0.1 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|282163474|ref|YP_003355859.1| - 0.0015 18.5 0.3 0.066 13.2 0.0 2.6 2 0 0 2 2 2 1 SIS domain MycE_N PF17843.1 gi|282163474|ref|YP_003355859.1| - 0.061 13.8 0.0 2.4 8.7 0.0 2.5 2 0 0 2 2 2 0 MycE methyltransferase N-terminal NTP_transferase PF00483.23 gi|282163475|ref|YP_003355860.1| - 5.2e-44 150.7 0.1 6.9e-44 150.3 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|282163475|ref|YP_003355860.1| - 5.4e-19 67.1 21.0 1.6e-08 33.9 2.7 5.6 3 2 4 7 7 7 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|282163475|ref|YP_003355860.1| - 2.3e-16 60.5 0.0 3.3e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|282163475|ref|YP_003355860.1| - 2.2e-07 30.5 2.0 2.2e-07 30.5 2.0 4.4 4 1 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|282163475|ref|YP_003355860.1| - 1.7e-06 28.0 0.6 2.5e-06 27.4 0.6 1.3 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_4 PF13562.6 gi|282163475|ref|YP_003355860.1| - 0.0033 17.6 0.1 0.16 12.2 0.1 2.9 1 1 0 1 1 1 1 Sugar nucleotidyl transferase Gcw_chp PF09694.10 gi|282163475|ref|YP_003355860.1| - 0.056 13.4 0.0 0.097 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (Gcw_chp) CTP_transf_3 PF02348.19 gi|282163475|ref|YP_003355860.1| - 0.067 13.1 0.1 0.12 12.3 0.1 1.4 1 1 0 1 1 1 0 Cytidylyltransferase Ribosomal_L40e PF01020.17 gi|282163476|ref|YP_003355861.1| - 1.8e-08 34.2 8.0 2.4e-08 33.7 8.0 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|282163476|ref|YP_003355861.1| - 0.0016 18.1 2.2 0.0022 17.7 2.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|282163476|ref|YP_003355861.1| - 0.0037 17.2 1.0 0.0041 17.1 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.18 gi|282163476|ref|YP_003355861.1| - 0.013 14.8 3.6 0.019 14.3 3.6 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others DNA_RNApol_7kD PF03604.13 gi|282163476|ref|YP_003355861.1| - 0.015 15.0 4.8 0.024 14.3 4.8 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.9 gi|282163476|ref|YP_003355861.1| - 0.027 14.5 0.8 3.6 7.8 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|282163476|ref|YP_003355861.1| - 0.033 13.9 1.5 0.64 9.8 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF35_N PF12172.8 gi|282163476|ref|YP_003355861.1| - 0.052 13.4 1.1 0.052 13.4 1.1 2.1 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|282163476|ref|YP_003355861.1| - 0.072 13.1 1.3 0.074 13.1 1.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L37e PF01907.19 gi|282163476|ref|YP_003355861.1| - 0.52 10.5 6.5 0.82 9.9 6.6 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e zinc_ribbon_13 PF09855.9 gi|282163476|ref|YP_003355861.1| - 0.65 10.2 3.6 1.3 9.3 0.1 2.1 1 1 2 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.16 gi|282163476|ref|YP_003355861.1| - 1.2 9.1 7.4 21 5.1 0.7 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Baculo_LEF5_C PF11792.8 gi|282163476|ref|YP_003355861.1| - 4.1 7.2 6.7 12 5.7 0.5 2.1 2 0 0 2 2 2 0 Baculoviridae late expression factor 5 C-terminal domain PAS_4 PF08448.10 gi|282163477|ref|YP_003355862.1| - 5.5e-26 91.0 0.0 2.1e-09 37.6 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|282163477|ref|YP_003355862.1| - 1.6e-24 86.1 1.0 5.2e-12 45.9 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|282163477|ref|YP_003355862.1| - 2.1e-23 82.5 0.6 7.7e-13 48.4 0.0 3.7 3 1 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|282163477|ref|YP_003355862.1| - 1.8e-20 73.0 0.0 7.7e-18 64.6 0.0 3.4 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.7 gi|282163477|ref|YP_003355862.1| - 5.8e-13 48.5 2.3 0.0014 18.6 0.1 3.4 3 0 0 3 3 3 3 PAS domain PAS_7 PF12860.7 gi|282163477|ref|YP_003355862.1| - 2e-07 31.2 1.2 0.012 15.8 0.0 4.2 4 0 0 4 4 4 2 PAS fold TBPIP PF07106.13 gi|282163477|ref|YP_003355862.1| - 0.0063 16.4 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain HTH_45 PF14947.6 gi|282163477|ref|YP_003355862.1| - 0.0082 16.1 0.0 0.027 14.5 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix LcrG PF07216.12 gi|282163477|ref|YP_003355862.1| - 0.014 15.3 2.6 0.26 11.2 0.0 2.4 2 0 0 2 2 2 0 LcrG protein PAS_11 PF14598.6 gi|282163477|ref|YP_003355862.1| - 0.017 15.3 0.1 0.82 9.8 0.0 2.3 2 0 0 2 2 2 0 PAS domain FAM194 PF14977.6 gi|282163477|ref|YP_003355862.1| - 0.062 12.6 0.0 0.33 10.2 0.0 2.0 2 0 0 2 2 2 0 FAM194 protein HTH_IclR PF09339.10 gi|282163477|ref|YP_003355862.1| - 0.071 12.9 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|282163477|ref|YP_003355862.1| - 0.095 12.6 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_40 PF14493.6 gi|282163477|ref|YP_003355862.1| - 0.13 12.7 0.6 0.54 10.8 0.0 2.3 3 0 0 3 3 2 0 Helix-turn-helix domain CENP-H PF05837.12 gi|282163477|ref|YP_003355862.1| - 2.1 8.8 5.6 1.5 9.2 3.3 1.9 2 0 0 2 2 2 0 Centromere protein H (CENP-H) YdjM PF04307.14 gi|282163478|ref|YP_003355863.1| - 1e-16 60.8 1.4 1.2e-16 60.5 1.4 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PSI_PSAK PF01241.18 gi|282163478|ref|YP_003355863.1| - 0.018 15.0 0.2 4.7 7.3 0.1 2.5 2 0 0 2 2 2 0 Photosystem I psaG / psaK IGPD PF00475.18 gi|282163479|ref|YP_003355864.1| - 2e-61 206.5 3.8 2.6e-61 206.2 3.8 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase EamA PF00892.20 gi|282163480|ref|YP_003355865.1| - 4e-44 150.1 43.4 6.3e-22 78.2 19.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|282163480|ref|YP_003355865.1| - 9.7e-06 25.1 20.8 0.0076 15.6 11.0 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family SLC35F PF06027.12 gi|282163480|ref|YP_003355865.1| - 1.3e-05 24.9 18.0 1.5e-05 24.6 18.0 1.1 1 0 0 1 1 1 1 Solute carrier family 35 UAA PF08449.11 gi|282163480|ref|YP_003355865.1| - 0.023 13.9 19.5 0.11 11.7 5.4 2.4 1 1 1 2 2 2 0 UAA transporter family Flavodoxin_1 PF00258.25 gi|282163481|ref|YP_003355866.1| - 5.3e-12 46.2 0.0 1e-11 45.3 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.15 gi|282163481|ref|YP_003355866.1| - 1.2e-08 34.9 0.3 4.9e-05 23.1 0.0 2.1 1 1 1 2 2 2 2 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|282163481|ref|YP_003355866.1| - 6.4e-08 32.4 0.0 7.8e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|282163481|ref|YP_003355866.1| - 4.8e-07 30.1 0.0 6.7e-07 29.6 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin domain EamA PF00892.20 gi|282163482|ref|YP_003355867.1| - 2e-55 186.7 40.3 1.2e-29 103.2 16.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|282163482|ref|YP_003355867.1| - 8.3e-07 28.6 20.9 8.7e-06 25.3 7.9 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family SLC35F PF06027.12 gi|282163482|ref|YP_003355867.1| - 4.3e-06 26.5 20.1 2e-05 24.3 20.3 1.8 1 1 0 1 1 1 1 Solute carrier family 35 UAA PF08449.11 gi|282163482|ref|YP_003355867.1| - 0.013 14.7 22.1 0.19 10.9 4.1 3.0 2 1 0 2 2 2 0 UAA transporter family Chordopox_A13L PF05961.11 gi|282163482|ref|YP_003355867.1| - 1 9.7 5.4 5 7.4 0.3 2.5 2 0 0 2 2 2 0 Chordopoxvirus A13L protein 7TM-7TMR_HD PF07698.11 gi|282163482|ref|YP_003355867.1| - 2.1 8.1 30.3 0.28 10.9 5.4 3.5 3 1 1 4 4 4 0 7TM receptor with intracellular HD hydrolase DUF2530 PF10745.9 gi|282163482|ref|YP_003355867.1| - 7.8 6.8 9.2 0.28 11.4 0.3 3.1 3 1 2 5 5 5 0 Protein of unknown function (DUF2530) MutS_V PF00488.21 gi|282163483|ref|YP_003355868.1| - 5.9e-09 36.2 0.1 9.8e-09 35.5 0.1 1.3 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|282163483|ref|YP_003355868.1| - 1.3e-06 28.9 0.0 5.2e-06 27.0 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|282163483|ref|YP_003355868.1| - 0.0019 18.3 0.1 0.006 16.7 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|282163483|ref|YP_003355868.1| - 0.0031 18.1 0.0 6.4 7.5 0.0 3.3 1 1 1 2 2 2 2 5'-3' exonuclease, C-terminal SAM fold AAA PF00004.29 gi|282163483|ref|YP_003355868.1| - 0.0053 17.2 0.3 0.032 14.6 0.1 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HHH PF00633.23 gi|282163483|ref|YP_003355868.1| - 0.03 14.2 0.0 13 5.9 0.0 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif AAA_14 PF13173.6 gi|282163483|ref|YP_003355868.1| - 0.082 12.9 0.0 0.38 10.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain NEMO PF11577.8 gi|282163483|ref|YP_003355868.1| - 0.16 12.0 0.4 0.36 10.9 0.4 1.5 1 0 0 1 1 1 0 NF-kappa-B essential modulator NEMO ABC_membrane PF00664.23 gi|282163484|ref|YP_003355869.1| - 1.1e-51 176.1 24.6 1.7e-51 175.5 24.6 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|282163484|ref|YP_003355869.1| - 2.5e-37 128.4 0.0 6.6e-37 127.1 0.0 1.7 2 0 0 2 2 2 1 ABC transporter RsgA_GTPase PF03193.16 gi|282163484|ref|YP_003355869.1| - 0.00069 19.6 0.0 0.002 18.1 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|282163484|ref|YP_003355869.1| - 0.00086 19.7 0.4 0.0027 18.1 0.2 2.0 2 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|282163484|ref|YP_003355869.1| - 0.0031 17.0 0.0 0.027 13.9 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282163484|ref|YP_003355869.1| - 0.0055 16.4 0.1 0.013 15.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DEAD PF00270.29 gi|282163484|ref|YP_003355869.1| - 0.037 13.8 0.0 0.076 12.8 0.0 1.5 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|282163484|ref|YP_003355869.1| - 0.053 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.6 gi|282163484|ref|YP_003355869.1| - 0.058 13.2 1.9 3.1 7.5 0.1 2.3 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|282163484|ref|YP_003355869.1| - 0.064 13.5 0.2 0.18 12.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|282163484|ref|YP_003355869.1| - 0.071 13.3 0.1 0.17 12.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|282163484|ref|YP_003355869.1| - 0.076 12.6 0.1 0.15 11.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|282163484|ref|YP_003355869.1| - 0.086 12.8 0.1 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MMR_HSR1 PF01926.23 gi|282163484|ref|YP_003355869.1| - 0.088 12.9 0.0 0.24 11.5 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.14 gi|282163484|ref|YP_003355869.1| - 0.11 12.5 0.2 0.21 11.5 0.2 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Rop-like PF05082.13 gi|282163484|ref|YP_003355869.1| - 0.14 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Rop-like DUF4260 PF14079.6 gi|282163484|ref|YP_003355869.1| - 3 7.8 8.3 0.78 9.7 0.6 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4260) DEAD PF00270.29 gi|282163485|ref|YP_003355870.1| - 2.5e-26 92.5 0.0 5e-26 91.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|282163485|ref|YP_003355870.1| - 1.3e-22 80.4 0.1 3.9e-22 78.8 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|282163485|ref|YP_003355870.1| - 7e-13 48.9 0.0 4.5e-12 46.3 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|282163485|ref|YP_003355870.1| - 0.00023 21.2 0.0 0.00037 20.5 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit RNase_H_2 PF13482.6 gi|282163486|ref|YP_003355871.1| - 1.8e-34 119.2 0.0 3.3e-34 118.3 0.0 1.4 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|282163486|ref|YP_003355871.1| - 0.00035 20.3 0.0 0.00059 19.6 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_exo1 PF03104.19 gi|282163486|ref|YP_003355871.1| - 0.031 13.4 0.3 0.2 10.8 0.1 2.0 1 1 1 2 2 2 0 DNA polymerase family B, exonuclease domain DNA_pol_A_exo1 PF01612.20 gi|282163486|ref|YP_003355871.1| - 0.2 11.4 0.0 0.31 10.7 0.0 1.3 1 0 0 1 1 1 0 3'-5' exonuclease TetR_N PF00440.23 gi|282163487|ref|YP_003355872.1| - 1.1e-14 53.9 0.0 3.1e-14 52.5 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|282163487|ref|YP_003355872.1| - 0.043 14.0 0.1 0.15 12.2 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase LacI PF00356.21 gi|282163487|ref|YP_003355872.1| - 0.075 12.8 0.2 0.28 11.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family Peptidase_M20 PF01546.28 gi|282163488|ref|YP_003355873.1| - 4.7e-33 114.6 0.0 5.9e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|282163488|ref|YP_003355873.1| - 2.7e-17 62.6 0.0 5.1e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Abhydrolase_6 PF12697.7 gi|282163489|ref|YP_003355874.1| - 2.1e-26 93.9 0.0 2.5e-26 93.7 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|282163489|ref|YP_003355874.1| - 2.9e-26 92.7 0.0 7.9e-18 65.0 0.2 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|282163489|ref|YP_003355874.1| - 3.6e-17 62.4 0.0 5.3e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|282163489|ref|YP_003355874.1| - 0.00057 19.7 0.0 0.2 11.4 0.0 2.2 2 0 0 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_3 PF07859.13 gi|282163489|ref|YP_003355874.1| - 0.0036 17.2 0.0 0.017 15.0 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Ndr PF03096.14 gi|282163489|ref|YP_003355874.1| - 0.0044 15.8 0.0 0.0065 15.2 0.0 1.3 1 0 0 1 1 1 1 Ndr family PGAP1 PF07819.13 gi|282163489|ref|YP_003355874.1| - 0.0075 16.0 0.0 2.4 7.8 0.0 2.2 1 1 0 2 2 2 2 PGAP1-like protein BAAT_C PF08840.11 gi|282163489|ref|YP_003355874.1| - 0.033 14.1 0.0 0.1 12.5 0.0 1.7 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal CBS PF00571.28 gi|282163492|ref|YP_003355877.1| - 1.8e-24 85.9 4.8 1.5e-12 47.8 1.4 2.1 2 0 0 2 2 2 2 CBS domain Herpes_UL55 PF04537.12 gi|282163492|ref|YP_003355877.1| - 0.097 12.7 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus UL55 protein Methyltransf_11 PF08241.12 gi|282163493|ref|YP_003355878.1| - 3.5e-22 78.9 0.0 6.7e-22 78.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282163493|ref|YP_003355878.1| - 5.1e-20 72.0 0.0 1e-19 71.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163493|ref|YP_003355878.1| - 2.8e-17 63.0 0.0 5.1e-17 62.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282163493|ref|YP_003355878.1| - 1.3e-14 54.3 0.0 1.8e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282163493|ref|YP_003355878.1| - 3.3e-11 43.0 0.0 4.9e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|282163493|ref|YP_003355878.1| - 1.4e-08 35.4 0.0 2.3e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|282163493|ref|YP_003355878.1| - 8.5e-07 28.5 0.0 1.5e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_29 PF03141.16 gi|282163493|ref|YP_003355878.1| - 1.4e-05 23.9 0.0 2.7e-05 22.9 0.0 1.4 2 0 0 2 2 2 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PCMT PF01135.19 gi|282163493|ref|YP_003355878.1| - 1.9e-05 24.5 0.0 2.3e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|282163493|ref|YP_003355878.1| - 0.00039 20.1 0.0 0.0006 19.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.14 gi|282163493|ref|YP_003355878.1| - 0.0021 17.5 0.0 0.0042 16.5 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|282163493|ref|YP_003355878.1| - 0.0034 17.0 0.0 0.015 14.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|282163493|ref|YP_003355878.1| - 0.0067 16.3 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase TPMT PF05724.11 gi|282163493|ref|YP_003355878.1| - 0.0094 15.6 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_4 PF02390.17 gi|282163493|ref|YP_003355878.1| - 0.013 14.9 0.0 1.4 8.4 0.1 2.2 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_32 PF13679.6 gi|282163493|ref|YP_003355878.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DNA_alkylation PF08713.11 gi|282163494|ref|YP_003355879.1| - 1.3e-38 132.8 2.2 1.5e-38 132.6 2.2 1.1 1 0 0 1 1 1 1 DNA alkylation repair enzyme HEAT_EZ PF13513.6 gi|282163494|ref|YP_003355879.1| - 9.5e-05 22.8 0.1 0.0038 17.7 0.0 3.1 4 0 0 4 4 4 1 HEAT-like repeat HEAT PF02985.22 gi|282163494|ref|YP_003355879.1| - 0.0007 19.7 0.4 0.077 13.3 0.0 3.9 4 1 1 5 5 5 1 HEAT repeat Thioredoxin_2 PF13098.6 gi|282163495|ref|YP_003355880.1| - 1.1e-13 51.6 0.0 2e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain TPR_16 PF13432.6 gi|282163495|ref|YP_003355880.1| - 5.7e-09 36.5 1.2 7.6e-09 36.1 0.2 1.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282163495|ref|YP_003355880.1| - 3.4e-07 30.5 1.0 0.0013 19.3 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat YfiO PF13525.6 gi|282163495|ref|YP_003355880.1| - 7e-06 25.9 0.3 5.1e-05 23.1 0.2 1.9 1 1 0 1 1 1 1 Outer membrane lipoprotein TPR_2 PF07719.17 gi|282163495|ref|YP_003355880.1| - 2.5e-05 24.0 0.7 0.00054 19.9 0.0 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat Thioredoxin_7 PF13899.6 gi|282163495|ref|YP_003355880.1| - 8.3e-05 22.7 0.0 0.00012 22.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.6 gi|282163495|ref|YP_003355880.1| - 0.0003 21.1 0.0 0.84 10.0 0.0 2.4 1 1 1 2 2 2 2 Thioredoxin-like Redoxin PF08534.10 gi|282163495|ref|YP_003355880.1| - 0.00088 19.0 0.0 0.008 15.9 0.0 2.1 1 1 1 2 2 2 1 Redoxin TPR_14 PF13428.6 gi|282163495|ref|YP_003355880.1| - 0.0063 17.2 0.7 0.018 15.8 0.1 2.1 2 1 0 2 2 2 1 Tetratricopeptide repeat Thioredoxin_9 PF14595.6 gi|282163495|ref|YP_003355880.1| - 0.028 14.2 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin TPR_1 PF00515.28 gi|282163495|ref|YP_003355880.1| - 0.028 14.2 0.0 0.087 12.7 0.0 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat Thioredox_DsbH PF03190.15 gi|282163495|ref|YP_003355880.1| - 0.03 14.3 0.0 0.049 13.6 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF255 Exo5 PF09810.9 gi|282163496|ref|YP_003355881.1| - 1.3e-50 173.0 0.0 1.1e-20 74.5 0.0 3.0 1 1 2 3 3 3 3 Exonuclease V - a 5' deoxyribonuclease PDDEXK_1 PF12705.7 gi|282163496|ref|YP_003355881.1| - 1.3e-05 25.3 0.1 4.4e-05 23.5 0.1 1.8 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Acyl-CoA_dh_1 PF00441.24 gi|282163496|ref|YP_003355881.1| - 0.098 12.9 0.5 2.1 8.6 0.1 2.3 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain DUF4106 PF13388.6 gi|282163497|ref|YP_003355882.1| - 0.1 11.8 0.4 0.14 11.4 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) Pribosyltran PF00156.27 gi|282163498|ref|YP_003355883.1| - 2.4e-18 66.2 0.9 3.4e-18 65.7 0.9 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|282163498|ref|YP_003355883.1| - 7.6e-05 22.2 0.1 0.0001 21.8 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|282163498|ref|YP_003355883.1| - 0.0052 16.3 0.5 0.022 14.3 0.5 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase Sigma70_r4_2 PF08281.12 gi|282163498|ref|YP_003355883.1| - 0.0056 16.3 0.1 0.039 13.6 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_7 PF02796.15 gi|282163498|ref|YP_003355883.1| - 0.0087 16.1 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|282163498|ref|YP_003355883.1| - 0.018 15.0 0.4 0.049 13.6 0.1 1.9 2 0 0 2 2 2 0 HTH domain HTH_23 PF13384.6 gi|282163498|ref|YP_003355883.1| - 0.024 14.4 0.0 0.041 13.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|282163498|ref|YP_003355883.1| - 0.034 13.7 0.1 0.072 12.6 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.12 gi|282163498|ref|YP_003355883.1| - 0.054 13.3 0.1 0.098 12.5 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain MarR_2 PF12802.7 gi|282163498|ref|YP_003355883.1| - 0.055 13.4 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|282163498|ref|YP_003355883.1| - 0.071 12.7 0.2 0.14 11.7 0.2 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PIN_6 PF17146.4 gi|282163499|ref|YP_003355884.1| - 1.6e-13 50.9 0.0 3.3e-13 50.0 0.0 1.5 1 0 0 1 1 1 1 PIN domain of ribonuclease zinc-ribbons_6 PF07191.12 gi|282163499|ref|YP_003355884.1| - 0.0035 17.3 0.3 0.0051 16.8 0.3 1.2 1 0 0 1 1 1 1 zinc-ribbons ADK_lid PF05191.14 gi|282163499|ref|YP_003355884.1| - 0.01 15.8 2.0 0.031 14.2 2.0 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid PIN_5 PF08745.11 gi|282163499|ref|YP_003355884.1| - 0.013 14.9 0.1 0.034 13.6 0.0 1.6 2 0 0 2 2 2 0 PINc domain ribonuclease Metallophos_2 PF12850.7 gi|282163501|ref|YP_003355886.1| - 2.3e-28 99.5 0.2 2.6e-28 99.3 0.2 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|282163501|ref|YP_003355886.1| - 2.6e-07 31.4 0.3 7.4e-05 23.3 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Helicase_C_2 PF13307.6 gi|282163502|ref|YP_003355887.1| - 1e-26 94.2 0.0 3.7e-26 92.3 0.0 1.9 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|282163502|ref|YP_003355887.1| - 8e-24 84.2 0.3 2.2e-23 82.8 0.3 1.7 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|282163502|ref|YP_003355887.1| - 7.3e-09 35.6 0.5 2.1e-05 24.4 0.0 3.1 3 0 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|282163502|ref|YP_003355887.1| - 2.5e-06 27.6 0.2 0.009 16.0 0.0 2.6 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|282163502|ref|YP_003355887.1| - 0.00019 21.0 0.1 0.026 14.0 0.1 2.4 2 0 0 2 2 2 1 PhoH-like protein Zot PF05707.12 gi|282163502|ref|YP_003355887.1| - 0.00024 20.8 0.1 0.13 11.9 0.0 2.5 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) DUF2075 PF09848.9 gi|282163502|ref|YP_003355887.1| - 0.0068 15.7 0.1 0.9 8.7 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|282163502|ref|YP_003355887.1| - 0.015 14.7 0.0 0.029 13.7 0.0 1.4 1 0 0 1 1 1 0 KaiC TIP49 PF06068.13 gi|282163502|ref|YP_003355887.1| - 0.047 12.9 0.2 0.079 12.1 0.2 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain HBB PF06777.11 gi|282163502|ref|YP_003355887.1| - 0.053 13.2 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 Helical and beta-bridge domain AAA_34 PF13872.6 gi|282163502|ref|YP_003355887.1| - 0.098 11.5 0.1 0.4 9.5 0.0 2.0 2 0 0 2 2 2 0 P-loop containing NTP hydrolase pore-1 AAA_30 PF13604.6 gi|282163502|ref|YP_003355887.1| - 0.14 11.9 0.1 0.24 11.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|282163502|ref|YP_003355887.1| - 0.14 11.3 0.1 0.81 8.8 0.0 1.9 2 0 0 2 2 2 0 PIF1-like helicase AAA PF00004.29 gi|282163502|ref|YP_003355887.1| - 0.18 12.2 0.3 14 6.1 0.0 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Ribosomal_S3Ae PF01015.18 gi|282163503|ref|YP_003355888.1| - 2e-67 226.7 1.7 2.3e-67 226.5 1.7 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family PAS PF00989.25 gi|282163504|ref|YP_003355889.1| - 1.4e-51 173.2 0.4 3.5e-15 56.0 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_3 PF08447.12 gi|282163504|ref|YP_003355889.1| - 2e-48 162.6 0.2 1.8e-12 47.4 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|282163504|ref|YP_003355889.1| - 2.2e-42 143.6 0.1 1.3e-12 47.8 0.0 4.4 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.10 gi|282163504|ref|YP_003355889.1| - 2e-29 102.1 1.4 4.2e-10 39.9 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.7 gi|282163504|ref|YP_003355889.1| - 2.1e-22 78.6 0.5 3.8e-06 26.8 0.1 4.0 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|282163504|ref|YP_003355889.1| - 1.2e-20 74.1 0.0 2.6e-20 73.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|282163504|ref|YP_003355889.1| - 0.00052 20.0 0.2 0.0019 18.2 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|282163504|ref|YP_003355889.1| - 0.0064 16.5 0.1 0.069 13.2 0.1 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|282163504|ref|YP_003355889.1| - 0.0065 16.4 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 GHKL domain MEKHLA PF08670.11 gi|282163504|ref|YP_003355889.1| - 0.011 15.7 1.4 0.44 10.4 0.0 2.9 3 0 0 3 3 2 0 MEKHLA domain PAS_12 PF18095.1 gi|282163504|ref|YP_003355889.1| - 0.025 14.2 0.1 12 5.5 0.0 3.3 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain SPOB_a PF14689.6 gi|282163504|ref|YP_003355889.1| - 0.043 13.5 0.1 0.1 12.3 0.1 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_7 PF12860.7 gi|282163504|ref|YP_003355889.1| - 0.046 13.9 3.4 20 5.4 0.0 4.7 4 2 0 4 4 4 0 PAS fold HATPase_c_3 PF13589.6 gi|282163504|ref|YP_003355889.1| - 0.052 13.4 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMP24_GP25L PF01105.24 gi|282163504|ref|YP_003355889.1| - 0.064 13.2 5.6 0.57 10.1 0.3 3.6 3 0 0 3 3 3 0 emp24/gp25L/p24 family/GOLD DUF2710 PF10921.8 gi|282163504|ref|YP_003355889.1| - 0.068 13.6 0.0 2.2 8.7 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2710) ZNRF_3_ecto PF18212.1 gi|282163504|ref|YP_003355889.1| - 0.34 10.9 1.5 27 4.8 0.0 3.9 5 0 0 5 5 4 0 ZNRF-3 Ectodomain Mis14 PF08641.12 gi|282163504|ref|YP_003355889.1| - 2.8 8.2 5.8 0.53 10.6 0.3 2.5 2 0 0 2 2 2 0 Kinetochore protein Mis14 like Ferric_reduct PF01794.19 gi|282163505|ref|YP_003355890.1| - 0.026 14.6 3.9 0.034 14.3 3.9 1.2 1 0 0 1 1 1 0 Ferric reductase like transmembrane component CRPA PF05745.11 gi|282163505|ref|YP_003355890.1| - 0.14 12.2 6.8 0.16 11.9 6.8 1.1 1 0 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) SdpI PF13630.6 gi|282163505|ref|YP_003355890.1| - 1.6 8.9 7.6 2 8.6 7.6 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family Phage_holin_3_6 PF07332.11 gi|282163505|ref|YP_003355890.1| - 5 7.2 11.6 6.5 6.8 11.6 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|282163505|ref|YP_003355890.1| - 7.6 5.2 10.8 7.8 5.1 10.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Tmemb_55A PF09788.9 gi|282163505|ref|YP_003355890.1| - 8.5 5.4 5.9 9.6 5.2 5.9 1.0 1 0 0 1 1 1 0 Transmembrane protein 55A Fasciclin PF02469.22 gi|282163506|ref|YP_003355891.1| - 1.4e-15 57.6 0.0 2.1e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 Fasciclin domain DUF2946 PF11162.8 gi|282163506|ref|YP_003355891.1| - 4.8 7.9 13.6 0.93 10.2 10.0 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2946) HigB-like_toxin PF05015.13 gi|282163507|ref|YP_003355892.1| - 0.00063 20.1 0.1 0.0008 19.8 0.1 1.2 1 0 0 1 1 1 1 RelE-like toxin of type II toxin-antitoxin system HigB Mnd1 PF03962.15 gi|282163508|ref|YP_003355893.1| - 0.063 13.6 0.3 0.09 13.1 0.3 1.3 1 0 0 1 1 1 0 Mnd1 HTH domain DUF835 PF05763.12 gi|282163508|ref|YP_003355893.1| - 0.074 12.8 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF835) Laminin_G_3 PF13385.6 gi|282163509|ref|YP_003355894.1| - 7.9e-27 94.3 0.4 7.9e-27 94.3 0.4 3.3 4 0 0 4 4 4 1 Concanavalin A-like lectin/glucanases superfamily Hepar_II_III PF07940.13 gi|282163509|ref|YP_003355894.1| - 2.6e-06 27.3 0.4 5.9e-06 26.1 0.1 1.8 2 0 0 2 2 2 1 Heparinase II/III-like protein DUF4962 PF16332.5 gi|282163509|ref|YP_003355894.1| - 5.7e-05 21.8 0.0 9.7e-05 21.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4962) Sialidase PF02973.16 gi|282163509|ref|YP_003355894.1| - 0.0002 20.9 0.0 0.00051 19.6 0.0 1.6 1 0 0 1 1 1 1 Sialidase, N-terminal domain HepII_C PF18675.1 gi|282163509|ref|YP_003355894.1| - 0.0011 19.0 0.6 0.007 16.4 0.5 2.4 2 0 0 2 2 2 1 Heparinase II C-terminal domain DUF1080 PF06439.11 gi|282163509|ref|YP_003355894.1| - 0.025 14.7 0.2 0.91 9.6 0.0 2.6 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1080) UDPG_MGDP_dh_N PF03721.14 gi|282163510|ref|YP_003355895.1| - 2.8e-37 128.1 0.0 4.4e-37 127.5 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|282163510|ref|YP_003355895.1| - 5.7e-22 77.7 0.1 5.3e-21 74.6 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|282163510|ref|YP_003355895.1| - 2.2e-17 63.4 0.0 5.7e-17 62.1 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FtsX PF02687.21 gi|282163511|ref|YP_003355896.1| - 1.3 9.6 7.7 1.4 9.4 1.8 2.1 2 0 0 2 2 2 0 FtsX-like permease family CbtB PF09489.10 gi|282163511|ref|YP_003355896.1| - 5.5 7.2 12.2 4.9 7.3 0.3 3.0 3 1 1 4 4 4 0 Probable cobalt transporter subunit (CbtB) PMT_2 PF13231.6 gi|282163512|ref|YP_003355897.1| - 4.7e-05 23.7 17.7 4.7e-05 23.7 17.7 4.0 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glucos_trans_II PF14264.6 gi|282163512|ref|YP_003355897.1| - 4.3 6.6 47.9 0.16 11.3 27.8 3.3 2 1 0 3 3 3 0 Glucosyl transferase GtrII Polysacc_synt_C PF14667.6 gi|282163513|ref|YP_003355898.1| - 8.4e-05 22.7 13.6 8.4e-05 22.7 13.6 3.9 2 1 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|282163513|ref|YP_003355898.1| - 8.5e-05 22.1 34.5 8.5e-05 22.1 34.5 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein DUF354 PF04007.12 gi|282163514|ref|YP_003355899.1| - 3.3e-18 65.9 0.0 3.9e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Robl_LC7 PF03259.17 gi|282163515|ref|YP_003355900.1| - 1.1e-11 44.4 0.5 1.8e-11 43.7 0.5 1.3 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|282163515|ref|YP_003355900.1| - 0.011 15.5 0.3 0.013 15.3 0.3 1.1 1 0 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting Hepar_II_III PF07940.13 gi|282163517|ref|YP_003355902.1| - 2e-08 34.2 0.1 3.2e-08 33.5 0.1 1.4 1 0 0 1 1 1 1 Heparinase II/III-like protein PIG-L PF02585.17 gi|282163518|ref|YP_003355903.1| - 1.1e-18 68.1 0.0 1.6e-18 67.6 0.0 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase WbqC PF08889.11 gi|282163519|ref|YP_003355904.1| - 2e-68 230.6 0.0 2.3e-68 230.4 0.0 1.0 1 0 0 1 1 1 1 WbqC-like protein family DUF354 PF04007.12 gi|282163520|ref|YP_003355905.1| - 5.5e-20 71.7 0.0 7.1e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_28 PF03033.20 gi|282163520|ref|YP_003355905.1| - 0.052 13.6 0.0 0.22 11.6 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Glyco_transf_4 PF13439.6 gi|282163520|ref|YP_003355905.1| - 0.086 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|282163521|ref|YP_003355906.1| - 1.4e-25 90.1 0.0 2e-22 79.8 0.0 2.5 2 1 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282163521|ref|YP_003355906.1| - 9.2e-07 29.0 0.0 1.8e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|282163521|ref|YP_003355906.1| - 0.092 13.3 0.0 0.26 11.8 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferase family 2 GFO_IDH_MocA PF01408.22 gi|282163522|ref|YP_003355907.1| - 1.3e-27 97.0 0.3 3.7e-27 95.5 0.1 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|282163522|ref|YP_003355907.1| - 2.6e-09 37.1 0.0 5.3e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.15 gi|282163522|ref|YP_003355907.1| - 0.0023 18.1 0.3 0.0054 16.9 0.3 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|282163522|ref|YP_003355907.1| - 0.01 15.9 0.1 0.032 14.3 0.0 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase OCD_Mu_crystall PF02423.15 gi|282163522|ref|YP_003355907.1| - 0.025 13.5 0.0 2.8 6.8 0.0 2.2 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family HTH_6 PF01418.17 gi|282163522|ref|YP_003355907.1| - 0.035 14.1 0.0 0.11 12.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family F420_oxidored PF03807.17 gi|282163522|ref|YP_003355907.1| - 0.051 14.1 1.7 0.06 13.9 0.0 2.1 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DegT_DnrJ_EryC1 PF01041.17 gi|282163523|ref|YP_003355908.1| - 1.8e-136 455.2 0.0 2e-136 455.0 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|282163523|ref|YP_003355908.1| - 3e-10 39.9 0.5 1.3e-09 37.8 0.5 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|282163523|ref|YP_003355908.1| - 2.4e-07 29.6 0.2 3.2e-07 29.2 0.2 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|282163523|ref|YP_003355908.1| - 1.1e-06 28.1 0.0 3.8e-06 26.3 0.0 1.9 1 1 1 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|282163523|ref|YP_003355908.1| - 0.00017 20.7 0.0 0.00026 20.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V ComK PF06338.11 gi|282163523|ref|YP_003355908.1| - 0.041 13.5 0.0 0.078 12.6 0.0 1.4 1 0 0 1 1 1 0 ComK protein OKR_DC_1 PF01276.20 gi|282163523|ref|YP_003355908.1| - 0.056 12.2 0.1 0.12 11.1 0.1 1.5 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain HRI1 PF16815.5 gi|282163523|ref|YP_003355908.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein HRI1 Hexapep PF00132.24 gi|282163524|ref|YP_003355909.1| - 6e-27 92.3 16.5 5.4e-08 32.3 0.3 5.2 5 0 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|282163524|ref|YP_003355909.1| - 8.6e-17 60.6 15.3 2.5e-06 27.1 0.3 5.4 5 0 0 5 5 5 5 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 gi|282163524|ref|YP_003355909.1| - 0.38 11.1 3.1 1.2 9.5 0.2 2.6 3 0 0 3 3 3 0 Polymer-forming cytoskeletal ParBc PF02195.18 gi|282163525|ref|YP_003355910.1| - 4.1e-08 33.4 0.5 1e-07 32.1 0.1 1.9 2 0 0 2 2 2 1 ParB-like nuclease domain Sigma70_r4_2 PF08281.12 gi|282163525|ref|YP_003355910.1| - 0.019 14.6 0.1 0.12 12.0 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|282163525|ref|YP_003355910.1| - 0.07 12.9 0.1 0.27 11.1 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain KorB PF08535.10 gi|282163525|ref|YP_003355910.1| - 0.088 12.9 0.1 7.4 6.7 0.0 3.1 3 0 0 3 3 3 0 KorB domain Myb_DNA-bind_6 PF13921.6 gi|282163525|ref|YP_003355910.1| - 0.12 12.6 0.0 0.48 10.7 0.0 2.0 2 0 0 2 2 2 0 Myb-like DNA-binding domain Aminotran_5 PF00266.19 gi|282163526|ref|YP_003355911.1| - 9.6e-94 314.4 0.2 1.1e-93 314.1 0.2 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|282163526|ref|YP_003355911.1| - 3.9e-08 32.9 0.5 5.7e-08 32.4 0.5 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|282163526|ref|YP_003355911.1| - 1.1e-05 24.9 1.0 1.7e-05 24.4 1.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|282163526|ref|YP_003355911.1| - 0.0064 15.1 0.1 0.0097 14.5 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF325 PF03804.13 gi|282163526|ref|YP_003355911.1| - 0.049 13.7 0.1 0.12 12.5 0.1 1.6 1 0 0 1 1 1 0 Viral proteins of unknown function SepSecS PF05889.13 gi|282163527|ref|YP_003355912.1| - 1.5e-47 162.2 0.0 2.8e-47 161.3 0.0 1.4 1 1 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|282163527|ref|YP_003355912.1| - 1.3e-17 63.8 0.0 1.8e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|282163527|ref|YP_003355912.1| - 1.8e-06 27.4 0.0 2e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II OKR_DC_1 PF01276.20 gi|282163527|ref|YP_003355912.1| - 2.2e-05 23.4 0.0 8.9e-05 21.4 0.0 1.8 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain DegT_DnrJ_EryC1 PF01041.17 gi|282163527|ref|YP_003355912.1| - 0.0014 18.0 0.0 0.0022 17.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|282163527|ref|YP_003355912.1| - 0.0015 17.1 0.0 0.0026 16.4 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DAP_epimerase PF01678.19 gi|282163528|ref|YP_003355913.1| - 5.6e-59 197.6 0.5 2.4e-35 121.4 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.11 gi|282163528|ref|YP_003355913.1| - 0.0024 17.0 0.5 0.18 10.8 0.0 2.1 2 0 0 2 2 2 2 Proline racemase Orn_Arg_deC_N PF02784.16 gi|282163529|ref|YP_003355914.1| - 3.8e-56 190.2 0.0 4.9e-56 189.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|282163529|ref|YP_003355914.1| - 2.9e-26 91.6 0.0 3.1e-26 91.5 0.0 1.4 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|282163529|ref|YP_003355914.1| - 1.3e-10 41.3 0.0 4.7e-10 39.5 0.0 1.8 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain S6PP PF05116.13 gi|282163529|ref|YP_003355914.1| - 0.0031 17.1 0.0 0.006 16.1 0.0 1.5 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Aminotran_1_2 PF00155.21 gi|282163530|ref|YP_003355915.1| - 3e-54 184.6 0.0 3.4e-54 184.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|282163530|ref|YP_003355915.1| - 0.00068 18.3 0.1 0.0019 16.8 0.1 1.6 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme RraA-like PF03737.15 gi|282163531|ref|YP_003355916.1| - 1.2e-40 139.2 0.2 1.2e-40 139.2 0.2 2.0 2 0 0 2 2 2 1 Aldolase/RraA OMPdecase PF00215.24 gi|282163531|ref|YP_003355916.1| - 1.1e-18 67.7 5.4 1.9e-18 66.9 5.4 1.4 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|282163531|ref|YP_003355916.1| - 9.3e-05 21.7 2.0 0.00031 20.0 0.7 2.2 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|282163531|ref|YP_003355916.1| - 0.012 15.0 1.9 0.012 15.0 1.9 1.7 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG HMGL-like PF00682.19 gi|282163531|ref|YP_003355916.1| - 0.013 15.1 1.5 0.061 12.9 0.1 2.1 1 1 1 2 2 2 0 HMGL-like PdxJ PF03740.13 gi|282163531|ref|YP_003355916.1| - 0.034 13.3 0.2 0.17 10.9 0.0 2.1 2 0 0 2 2 2 0 Pyridoxal phosphate biosynthesis protein PdxJ IGPS PF00218.21 gi|282163531|ref|YP_003355916.1| - 0.034 13.3 0.5 0.051 12.7 0.5 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PEP_mutase PF13714.6 gi|282163531|ref|YP_003355916.1| - 0.041 13.3 4.1 0.041 13.3 1.0 2.2 1 1 2 3 3 3 0 Phosphoenolpyruvate phosphomutase DeoC PF01791.9 gi|282163531|ref|YP_003355916.1| - 0.077 12.6 2.4 0.33 10.5 0.6 2.4 1 1 1 2 2 2 0 DeoC/LacD family aldolase FMN_dh PF01070.18 gi|282163531|ref|YP_003355916.1| - 0.39 9.7 9.0 0.19 10.7 6.9 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase PcrB PF01884.17 gi|282163531|ref|YP_003355916.1| - 0.69 9.3 6.4 0.9 9.0 1.7 2.6 2 1 0 3 3 3 0 PcrB family TMP-TENI PF02581.17 gi|282163531|ref|YP_003355916.1| - 0.84 8.9 7.3 7.3 5.9 1.4 3.0 1 1 2 3 3 3 0 Thiamine monophosphate synthase Transposase_mut PF00872.18 gi|282163532|ref|YP_003355917.1| - 7.7e-106 354.2 0.3 9e-106 353.9 0.3 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|282163532|ref|YP_003355917.1| - 2.2e-12 47.2 0.0 4.2e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS240 PF13610.6 gi|282163532|ref|YP_003355917.1| - 1.4e-07 31.8 0.3 0.00042 20.6 0.2 2.7 1 1 1 2 2 2 2 DDE domain DDE_Tnp_IS66 PF03050.14 gi|282163532|ref|YP_003355917.1| - 4.9e-06 26.2 0.1 8.5e-06 25.4 0.1 1.4 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_ISL3 PF01610.17 gi|282163532|ref|YP_003355917.1| - 0.06 13.1 0.1 0.1 12.3 0.1 1.4 1 0 0 1 1 1 0 Transposase GDP_Man_Dehyd PF16363.5 gi|282163533|ref|YP_003355918.1| - 2.9e-63 214.3 0.0 6e-63 213.2 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|282163533|ref|YP_003355918.1| - 1.9e-62 210.8 0.0 2.3e-62 210.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|282163533|ref|YP_003355918.1| - 3.9e-21 75.3 0.0 5.2e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|282163533|ref|YP_003355918.1| - 7.3e-20 71.3 0.3 1.4e-18 67.1 0.3 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|282163533|ref|YP_003355918.1| - 5.8e-16 58.4 0.1 9.2e-14 51.2 0.0 2.5 1 1 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|282163533|ref|YP_003355918.1| - 6.7e-16 58.7 0.0 8.8e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|282163533|ref|YP_003355918.1| - 1.8e-15 56.8 0.0 2.8e-15 56.2 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|282163533|ref|YP_003355918.1| - 1.2e-07 31.5 0.0 1.9e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.18 gi|282163533|ref|YP_003355918.1| - 5.7e-06 26.6 0.0 1.2e-05 25.6 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.10 gi|282163533|ref|YP_003355918.1| - 0.00027 20.9 0.6 0.011 15.7 0.6 2.3 1 1 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|282163533|ref|YP_003355918.1| - 0.0058 16.9 0.0 0.0094 16.2 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|282163533|ref|YP_003355918.1| - 0.013 15.0 0.0 0.16 11.4 0.0 2.1 2 0 0 2 2 2 0 short chain dehydrogenase NAD_binding_2 PF03446.15 gi|282163533|ref|YP_003355918.1| - 0.034 14.3 0.0 0.15 12.2 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_transf_5 PF08323.11 gi|282163533|ref|YP_003355918.1| - 0.13 12.0 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Starch synthase catalytic domain DFP PF04127.15 gi|282163533|ref|YP_003355918.1| - 0.17 11.7 0.0 0.27 11.0 0.0 1.2 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein NTP_transf_2 PF01909.23 gi|282163534|ref|YP_003355919.1| - 6.7e-08 32.7 0.1 7.6e-08 32.5 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|282163534|ref|YP_003355919.1| - 0.00017 21.6 0.0 0.0002 21.4 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF1748 PF08520.10 gi|282163534|ref|YP_003355919.1| - 0.11 12.4 0.1 0.39 10.7 0.1 1.8 2 0 0 2 2 2 0 Fungal protein of unknown function (DUF1748) BolA PF01722.18 gi|282163534|ref|YP_003355919.1| - 0.23 11.8 0.0 0.3 11.4 0.0 1.3 1 0 0 1 1 1 0 BolA-like protein PDDEXK_3 PF13366.6 gi|282163535|ref|YP_003355920.1| - 1.1e-41 141.9 0.3 1.2e-41 141.7 0.3 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Epimerase_2 PF02350.19 gi|282163536|ref|YP_003355921.1| - 5.1e-117 390.6 0.0 5.9e-117 390.4 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 gi|282163536|ref|YP_003355921.1| - 0.04 13.9 0.0 0.096 12.7 0.0 1.6 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|282163536|ref|YP_003355921.1| - 0.17 12.3 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain DDE_Tnp_1 PF01609.21 gi|282163537|ref|YP_003355922.1| - 6.3e-29 101.2 0.8 9.1e-29 100.6 0.8 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|282163537|ref|YP_003355922.1| - 8.4e-08 32.1 0.1 2.2e-07 30.8 0.1 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|282163537|ref|YP_003355922.1| - 1.3e-05 25.2 0.0 2.6e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|282163537|ref|YP_003355922.1| - 0.002 18.4 0.1 0.0037 17.5 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain ABC_membrane PF00664.23 gi|282163538|ref|YP_003355923.1| - 1.7e-30 106.6 13.8 2.2e-30 106.3 13.8 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region DUF2207 PF09972.9 gi|282163538|ref|YP_003355923.1| - 0.46 9.2 9.4 1.9 7.1 0.8 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) ABC_tran PF00005.27 gi|282163539|ref|YP_003355924.1| - 2.1e-36 125.4 0.0 3e-36 125.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|282163539|ref|YP_003355924.1| - 7.6e-05 22.3 0.2 0.0016 17.9 0.0 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|282163539|ref|YP_003355924.1| - 7.6e-05 22.7 0.0 0.00015 21.7 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase ABC_membrane PF00664.23 gi|282163539|ref|YP_003355924.1| - 0.00021 21.0 2.7 0.00029 20.6 2.7 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_16 PF13191.6 gi|282163539|ref|YP_003355924.1| - 0.00029 21.3 0.0 0.00045 20.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|282163539|ref|YP_003355924.1| - 0.002 18.0 0.3 0.74 9.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DEAD PF00270.29 gi|282163539|ref|YP_003355924.1| - 0.0058 16.4 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|282163539|ref|YP_003355924.1| - 0.0079 16.5 0.0 0.03 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|282163539|ref|YP_003355924.1| - 0.0082 16.2 0.0 0.047 13.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|282163539|ref|YP_003355924.1| - 0.0085 15.8 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|282163539|ref|YP_003355924.1| - 0.015 15.3 0.0 0.039 13.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|282163539|ref|YP_003355924.1| - 0.022 14.8 1.1 0.038 14.1 0.1 1.9 3 0 0 3 3 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|282163539|ref|YP_003355924.1| - 0.032 14.6 0.0 0.074 13.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 gi|282163539|ref|YP_003355924.1| - 0.033 14.1 0.0 0.071 13.0 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|282163539|ref|YP_003355924.1| - 0.043 14.4 0.0 0.068 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|282163539|ref|YP_003355924.1| - 0.055 13.0 0.0 0.099 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA PF00004.29 gi|282163539|ref|YP_003355924.1| - 0.057 13.8 0.0 0.17 12.3 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|282163539|ref|YP_003355924.1| - 0.06 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|282163539|ref|YP_003355924.1| - 0.084 12.6 0.0 0.12 12.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|282163539|ref|YP_003355924.1| - 0.12 12.1 0.1 0.26 11.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|282163539|ref|YP_003355924.1| - 0.17 11.6 0.1 1.3 8.7 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF1616 PF07760.11 gi|282163540|ref|YP_003355925.1| - 5.4e-111 370.7 0.0 6.3e-111 370.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4064 PF13273.6 gi|282163540|ref|YP_003355925.1| - 0.089 13.1 0.1 0.089 13.1 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) DUF58 PF01882.18 gi|282163542|ref|YP_003355927.1| - 8.9e-17 61.2 0.0 1.8e-16 60.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|282163543|ref|YP_003355928.1| - 6.1e-59 197.6 0.1 8.9e-59 197.0 0.1 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|282163543|ref|YP_003355928.1| - 8.1e-21 73.7 0.0 1.5e-20 72.8 0.0 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|282163543|ref|YP_003355928.1| - 2.4e-13 50.3 0.0 5.8e-13 49.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|282163543|ref|YP_003355928.1| - 5e-06 26.3 0.0 2.4e-05 24.1 0.0 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|282163543|ref|YP_003355928.1| - 1.6e-05 25.3 0.0 3.9e-05 24.1 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|282163543|ref|YP_003355928.1| - 3e-05 23.2 0.0 7.7e-05 21.9 0.0 1.6 1 1 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|282163543|ref|YP_003355928.1| - 0.0017 17.7 0.4 1.7 8.0 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|282163543|ref|YP_003355928.1| - 0.0041 16.8 0.0 0.053 13.2 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF61 PF01886.16 gi|282163543|ref|YP_003355928.1| - 0.077 13.0 0.4 4.7 7.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF61 AAA_18 PF13238.6 gi|282163543|ref|YP_003355928.1| - 0.11 13.0 0.0 0.34 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF4350 PF14258.6 gi|282163544|ref|YP_003355929.1| - 2.8e-05 24.5 0.7 0.0002 21.7 0.1 2.7 2 1 1 3 3 3 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|282163544|ref|YP_003355929.1| - 0.17 11.3 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 ABC-type uncharacterized transport system CarboxypepD_reg PF13620.6 gi|282163545|ref|YP_003355930.1| - 7.4e-06 26.2 8.3 0.039 14.2 0.9 3.7 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|282163545|ref|YP_003355930.1| - 0.00074 19.5 6.2 0.24 11.4 0.2 4.1 4 1 0 4 4 4 2 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|282163545|ref|YP_003355930.1| - 0.00095 19.4 6.9 1.1 9.6 2.8 3.6 3 1 0 3 3 3 2 Invasin, domain 3 DUF4129 PF13559.6 gi|282163545|ref|YP_003355930.1| - 0.0028 17.9 0.0 0.0062 16.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Dioxygenase_C PF00775.21 gi|282163545|ref|YP_003355930.1| - 0.099 12.1 0.0 0.29 10.6 0.0 1.8 1 0 0 1 1 1 0 Dioxygenase MG2 PF01835.19 gi|282163545|ref|YP_003355930.1| - 0.14 12.6 0.1 2.6 8.5 0.0 2.7 2 0 0 2 2 2 0 MG2 domain DUF4097 PF13349.6 gi|282163545|ref|YP_003355930.1| - 1.3 8.3 6.3 2.9 7.2 2.6 2.4 2 0 0 2 2 2 0 Putative adhesin DUF485 PF04341.12 gi|282163546|ref|YP_003355931.1| - 1.2 9.1 7.8 3.5 7.7 7.8 1.8 1 1 0 1 1 1 0 Protein of unknown function, DUF485 fn3_3 PF14686.6 gi|282163547|ref|YP_003355932.1| - 0.034 13.9 0.1 1.4 8.7 0.0 3.5 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II DUF1180 PF06679.12 gi|282163548|ref|YP_003355933.1| - 0.76 10.2 2.7 19 5.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1180) YopE_N PF09020.10 gi|282163548|ref|YP_003355933.1| - 1.9 8.8 6.5 0.29 11.4 0.3 2.5 3 0 0 3 3 3 0 YopE, N terminal CarboxypepD_reg PF13620.6 gi|282163549|ref|YP_003355934.1| - 0.0044 17.3 0.3 0.0044 17.3 0.3 3.3 2 1 2 4 4 4 1 Carboxypeptidase regulatory-like domain Y_Y_Y PF07495.13 gi|282163549|ref|YP_003355934.1| - 0.15 12.0 0.0 0.46 10.5 0.0 1.8 1 0 0 1 1 1 0 Y_Y_Y domain ABC_membrane PF00664.23 gi|282163550|ref|YP_003355935.1| - 3.9e-42 144.8 18.6 6.2e-42 144.1 18.6 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|282163550|ref|YP_003355935.1| - 8.5e-38 130.0 0.2 2.4e-37 128.5 0.0 1.9 2 0 0 2 2 1 1 ABC transporter SMC_N PF02463.19 gi|282163550|ref|YP_003355935.1| - 6.2e-06 25.8 1.2 0.00011 21.8 1.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|282163550|ref|YP_003355935.1| - 8.9e-06 25.7 1.2 0.045 13.6 0.0 2.5 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|282163550|ref|YP_003355935.1| - 6.3e-05 22.9 0.1 0.00022 21.2 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase AAA_14 PF13173.6 gi|282163550|ref|YP_003355935.1| - 0.00029 20.9 0.1 0.028 14.5 0.0 2.9 2 1 0 2 2 2 1 AAA domain DEAD PF00270.29 gi|282163550|ref|YP_003355935.1| - 0.00038 20.3 0.1 0.00084 19.2 0.1 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|282163550|ref|YP_003355935.1| - 0.00084 19.8 0.0 0.0035 17.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|282163550|ref|YP_003355935.1| - 0.0013 18.4 0.0 0.0037 17.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain cobW PF02492.19 gi|282163550|ref|YP_003355935.1| - 0.0032 17.1 0.3 0.022 14.3 0.0 2.2 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|282163550|ref|YP_003355935.1| - 0.019 15.2 0.0 0.057 13.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|282163550|ref|YP_003355935.1| - 0.021 14.6 0.0 0.05 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|282163550|ref|YP_003355935.1| - 0.026 14.5 0.0 0.087 12.7 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain Zeta_toxin PF06414.12 gi|282163550|ref|YP_003355935.1| - 0.029 13.7 0.0 0.064 12.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|282163550|ref|YP_003355935.1| - 0.041 14.0 0.0 0.11 12.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|282163550|ref|YP_003355935.1| - 0.049 14.2 0.0 0.15 12.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|282163550|ref|YP_003355935.1| - 0.049 13.7 0.3 0.14 12.3 0.3 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|282163550|ref|YP_003355935.1| - 0.057 13.0 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|282163550|ref|YP_003355935.1| - 0.07 13.6 0.5 0.45 11.0 0.5 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|282163550|ref|YP_003355935.1| - 0.071 13.1 0.0 0.31 11.1 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 gi|282163550|ref|YP_003355935.1| - 0.076 13.5 0.1 0.18 12.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|282163550|ref|YP_003355935.1| - 0.12 12.1 0.3 0.44 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|282163550|ref|YP_003355935.1| - 0.13 12.3 0.1 0.36 10.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) HCMV_UL139 PF12507.8 gi|282163550|ref|YP_003355935.1| - 0.16 12.3 0.1 0.32 11.4 0.1 1.4 1 0 0 1 1 1 0 Human Cytomegalovirus UL139 protein AAA_25 PF13481.6 gi|282163550|ref|YP_003355935.1| - 0.18 11.4 0.0 0.4 10.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain DDE_Tnp_1 PF01609.21 gi|282163551|ref|YP_003355936.1| - 4.6e-29 101.6 0.8 6.5e-29 101.1 0.8 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|282163551|ref|YP_003355936.1| - 9e-11 41.6 0.2 2.8e-10 40.1 0.2 1.9 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|282163551|ref|YP_003355936.1| - 0.0001 22.4 0.1 0.00019 21.4 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|282163551|ref|YP_003355936.1| - 0.00012 22.3 0.1 0.00021 21.5 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF4372 PF14294.6 gi|282163551|ref|YP_003355936.1| - 0.023 14.8 0.0 0.044 13.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4372) Peptidase_S24 PF00717.23 gi|282163552|ref|YP_003355937.1| - 1.2e-09 38.0 0.0 2.6e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like STAR_dimer PF16544.5 gi|282163553|ref|YP_003355938.1| - 0.14 11.7 0.1 5.5 6.6 0.0 2.5 2 0 0 2 2 2 0 Homodimerisation region of STAR domain protein Radical_SAM PF04055.21 gi|282163554|ref|YP_003355939.1| - 5.3e-21 75.7 0.0 8e-21 75.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|282163554|ref|YP_003355939.1| - 1.9e-09 37.6 0.0 4.5e-09 36.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|282163554|ref|YP_003355939.1| - 2.5e-09 37.5 0.0 5.5e-09 36.4 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|282163554|ref|YP_003355939.1| - 3e-06 27.6 0.1 7.7e-06 26.3 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|282163555|ref|YP_003355940.1| - 6.1e-21 75.5 0.1 1.3e-20 74.4 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|282163555|ref|YP_003355940.1| - 8.9e-10 39.0 0.0 2.5e-09 37.5 0.0 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|282163555|ref|YP_003355940.1| - 2e-07 31.4 0.1 3.8e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|282163555|ref|YP_003355940.1| - 0.0001 22.4 0.1 0.00021 21.4 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-MYND PF01753.18 gi|282163555|ref|YP_003355940.1| - 0.81 9.8 5.9 0.37 10.9 0.8 2.5 2 0 0 2 2 2 0 MYND finger Fer4_2 PF12797.7 gi|282163555|ref|YP_003355940.1| - 1.9 8.8 8.0 1.3 9.3 2.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain PqqD PF05402.12 gi|282163556|ref|YP_003355941.1| - 1.2e-15 57.5 0.0 1.6e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DDE_Tnp_1 PF01609.21 gi|282163557|ref|YP_003355942.1| - 3.7e-26 92.1 1.4 4.7e-26 91.8 1.4 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|282163557|ref|YP_003355942.1| - 9.4e-12 44.8 0.2 2e-11 43.8 0.2 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|282163557|ref|YP_003355942.1| - 4.3e-05 23.6 0.1 8.4e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|282163557|ref|YP_003355942.1| - 9.8e-05 22.6 0.6 0.00019 21.7 0.1 1.7 2 0 0 2 2 2 1 Transposase DDE domain DUF4372 PF14294.6 gi|282163557|ref|YP_003355942.1| - 0.00099 19.2 0.0 0.002 18.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4372) DDE_Tnp_4 PF13359.6 gi|282163557|ref|YP_003355942.1| - 0.091 12.4 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 DDE superfamily endonuclease NTP_transf_5 PF14907.6 gi|282163558|ref|YP_003355943.1| - 1.9e-50 171.8 0.8 2.3e-50 171.5 0.8 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Polbeta PF18765.1 gi|282163558|ref|YP_003355943.1| - 0.024 14.7 0.2 0.067 13.3 0.0 1.8 2 0 0 2 2 2 0 Polymerase beta, Nucleotidyltransferase UDPG_MGDP_dh_N PF03721.14 gi|282163559|ref|YP_003355944.1| - 8e-36 123.4 0.0 1.5e-35 122.5 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|282163559|ref|YP_003355944.1| - 1.5e-22 79.6 0.1 4e-21 75.0 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|282163559|ref|YP_003355944.1| - 5.9e-19 68.4 0.0 1.4e-18 67.2 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Pyr_redox PF00070.27 gi|282163559|ref|YP_003355944.1| - 0.031 14.8 0.1 4.4 7.9 0.0 3.1 3 1 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase DUF2073 PF09846.9 gi|282163559|ref|YP_003355944.1| - 0.041 13.8 0.1 0.11 12.3 0.1 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) NAD_binding_2 PF03446.15 gi|282163559|ref|YP_003355944.1| - 0.089 13.0 0.3 2.4 8.3 0.2 2.9 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase sCache_3_3 PF17202.4 gi|282163559|ref|YP_003355944.1| - 0.11 12.9 0.1 13 6.3 0.0 2.9 3 0 0 3 3 3 0 Single cache domain 3 Polysacc_synt PF01943.17 gi|282163560|ref|YP_003355945.1| - 3.4e-12 46.3 44.2 3.4e-12 46.3 44.2 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|282163560|ref|YP_003355945.1| - 5.5e-07 29.1 42.0 1.9e-06 27.3 28.8 2.2 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|282163560|ref|YP_003355945.1| - 7.5e-05 22.8 9.3 7.5e-05 22.8 9.3 4.5 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain PMT_2 PF13231.6 gi|282163561|ref|YP_003355946.1| - 1.6e-06 28.4 14.9 1.6e-06 28.4 14.9 4.5 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_1 PF00534.20 gi|282163562|ref|YP_003355947.1| - 1.1e-30 106.5 0.0 2.3e-30 105.4 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282163562|ref|YP_003355947.1| - 1.1e-24 87.4 0.0 1.5e-24 86.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282163562|ref|YP_003355947.1| - 1e-12 48.4 0.0 3.8e-12 46.5 0.0 1.9 2 1 1 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|282163562|ref|YP_003355947.1| - 1.4e-10 41.5 0.0 2.5e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.13 gi|282163562|ref|YP_003355947.1| - 0.0074 14.9 0.0 0.61 8.6 0.0 2.2 2 0 0 2 2 2 2 Glycogen synthase Glyco_trans_4_4 PF13579.6 gi|282163562|ref|YP_003355947.1| - 0.061 13.8 0.0 0.088 13.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain ABC_tran_Xtn PF12848.7 gi|282163562|ref|YP_003355947.1| - 0.13 12.3 1.5 0.26 11.3 1.5 1.4 1 0 0 1 1 1 0 ABC transporter Glycos_transf_1 PF00534.20 gi|282163563|ref|YP_003355948.1| - 4.7e-46 156.4 0.2 8.6e-46 155.6 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282163563|ref|YP_003355948.1| - 3.7e-34 118.0 0.0 5.4e-34 117.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282163563|ref|YP_003355948.1| - 4.4e-14 52.8 0.0 3.5e-13 49.9 0.0 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|282163563|ref|YP_003355948.1| - 1.1e-06 28.8 1.1 4.1e-06 26.9 1.1 1.9 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|282163563|ref|YP_003355948.1| - 2.9e-06 27.6 0.0 5.3e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|282163563|ref|YP_003355948.1| - 0.018 13.7 0.1 0.049 12.3 0.0 1.6 1 1 0 2 2 2 0 Glycosyltransferase family 20 Glycos_transf_2 PF00535.26 gi|282163564|ref|YP_003355949.1| - 1.8e-28 99.5 0.4 5.3e-23 81.7 0.0 2.9 2 1 1 3 3 3 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282163564|ref|YP_003355949.1| - 1.3e-06 28.5 0.0 2.7e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|282163564|ref|YP_003355949.1| - 0.0004 20.8 0.0 0.0051 17.3 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|282163564|ref|YP_003355949.1| - 0.035 13.6 0.0 0.065 12.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 DUF2964 PF11177.8 gi|282163564|ref|YP_003355949.1| - 0.13 12.5 2.0 0.26 11.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) VMA21 PF09446.10 gi|282163564|ref|YP_003355949.1| - 0.21 11.7 7.9 0.48 10.6 7.9 1.5 1 0 0 1 1 1 0 VMA21-like domain GFO_IDH_MocA PF01408.22 gi|282163565|ref|YP_003355950.1| - 6.3e-28 98.0 0.1 6.2e-27 94.8 0.1 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|282163565|ref|YP_003355950.1| - 3.5e-06 27.0 0.0 7.1e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain DapB_N PF01113.20 gi|282163565|ref|YP_003355950.1| - 8.7e-05 22.6 0.2 0.00046 20.3 0.1 2.2 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Shikimate_DH PF01488.20 gi|282163565|ref|YP_003355950.1| - 0.0016 18.5 0.7 0.019 15.0 0.1 2.3 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.24 gi|282163565|ref|YP_003355950.1| - 0.003 18.0 0.1 0.017 15.6 0.0 2.1 1 1 1 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|282163565|ref|YP_003355950.1| - 0.0038 16.8 0.3 0.0096 15.5 0.3 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|282163565|ref|YP_003355950.1| - 0.0065 15.8 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|282163565|ref|YP_003355950.1| - 0.025 14.9 0.1 0.058 13.7 0.1 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|282163565|ref|YP_003355950.1| - 0.029 14.5 0.3 0.1 12.8 0.2 2.0 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|282163565|ref|YP_003355950.1| - 0.037 14.6 0.1 0.084 13.5 0.1 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.15 gi|282163565|ref|YP_003355950.1| - 0.076 11.9 0.0 0.2 10.6 0.0 1.7 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family CoA_binding PF02629.19 gi|282163565|ref|YP_003355950.1| - 0.079 13.6 0.2 0.2 12.4 0.1 1.7 2 0 0 2 2 1 0 CoA binding domain DegT_DnrJ_EryC1 PF01041.17 gi|282163566|ref|YP_003355951.1| - 3e-138 461.1 0.0 3.3e-138 460.9 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|282163566|ref|YP_003355951.1| - 1.3e-09 37.8 0.2 8.2e-09 35.2 0.2 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|282163566|ref|YP_003355951.1| - 2.6e-09 36.1 0.2 3.7e-09 35.6 0.2 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|282163566|ref|YP_003355951.1| - 1.9e-08 33.9 0.2 1.1e-07 31.3 0.2 2.2 1 1 0 1 1 1 1 Aminotransferase class I and II ComK PF06338.11 gi|282163566|ref|YP_003355951.1| - 0.011 15.4 0.0 0.034 13.8 0.0 1.9 2 0 0 2 2 2 0 ComK protein Hexapep PF00132.24 gi|282163567|ref|YP_003355952.1| - 2.4e-27 93.6 34.2 2e-09 36.8 2.9 4.1 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|282163567|ref|YP_003355952.1| - 2.3e-17 62.4 13.2 1.7e-08 34.1 1.4 4.1 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 gi|282163567|ref|YP_003355952.1| - 0.072 13.4 4.7 0.062 13.6 1.3 2.0 1 1 1 2 2 2 0 Polymer-forming cytoskeletal DUF4954 PF16314.5 gi|282163567|ref|YP_003355952.1| - 0.14 10.3 1.6 0.21 9.7 1.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) ParBc PF02195.18 gi|282163568|ref|YP_003355953.1| - 7.2e-15 55.1 0.4 2.2e-14 53.5 0.4 1.9 1 0 0 1 1 1 1 ParB-like nuclease domain DUF5129 PF17173.4 gi|282163568|ref|YP_003355953.1| - 0.057 12.5 1.0 0.12 11.5 1.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5129) MutS_II PF05188.17 gi|282163568|ref|YP_003355953.1| - 0.14 12.5 1.1 2.8 8.2 0.0 2.5 2 1 0 2 2 2 0 MutS domain II Syntaxin-6_N PF09177.11 gi|282163568|ref|YP_003355953.1| - 0.16 12.5 2.9 0.62 10.7 1.4 2.9 2 1 0 2 2 2 0 Syntaxin 6, N-terminal PCRF PF03462.18 gi|282163568|ref|YP_003355953.1| - 0.44 10.4 5.8 0.42 10.4 3.2 2.1 2 1 0 2 2 2 0 PCRF domain YdjM PF04307.14 gi|282163569|ref|YP_003355954.1| - 1.9e-13 50.1 2.9 2.3e-13 49.8 2.9 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Abhydrolase_1 PF00561.20 gi|282163571|ref|YP_003355956.1| - 2.4e-33 115.9 0.0 1.3e-32 113.5 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|282163571|ref|YP_003355956.1| - 4.5e-18 66.7 0.3 5.6e-18 66.3 0.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|282163571|ref|YP_003355956.1| - 5.8e-16 58.5 0.0 8.3e-16 58.0 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|282163571|ref|YP_003355956.1| - 2.6e-06 26.4 0.0 3.1e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Ndr family Abhydrolase_2 PF02230.16 gi|282163571|ref|YP_003355956.1| - 0.0066 16.3 0.0 0.93 9.3 0.0 2.4 2 1 0 2 2 2 1 Phospholipase/Carboxylesterase DUF5619 PF18505.1 gi|282163571|ref|YP_003355956.1| - 0.0068 16.4 0.1 0.04 13.9 0.0 2.3 4 0 0 4 4 4 1 Domain of unknown function (DUF5619) Esterase PF00756.20 gi|282163571|ref|YP_003355956.1| - 0.011 15.4 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 Putative esterase DUF2048 PF09752.9 gi|282163571|ref|YP_003355956.1| - 0.012 14.7 0.0 0.013 14.6 0.0 1.2 1 0 0 1 1 1 0 Abhydrolase domain containing 18 Abhydrolase_4 PF08386.10 gi|282163571|ref|YP_003355956.1| - 0.017 15.2 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein Thioesterase PF00975.20 gi|282163571|ref|YP_003355956.1| - 0.024 14.8 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain Abhydrolase_5 PF12695.7 gi|282163571|ref|YP_003355956.1| - 0.025 14.4 0.0 0.41 10.4 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase family BAAT_C PF08840.11 gi|282163571|ref|YP_003355956.1| - 0.028 14.3 0.0 0.11 12.4 0.0 1.8 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.13 gi|282163571|ref|YP_003355956.1| - 0.038 13.8 0.1 0.1 12.4 0.1 1.7 1 1 0 1 1 1 0 alpha/beta hydrolase fold DUF915 PF06028.11 gi|282163571|ref|YP_003355956.1| - 0.058 12.7 0.0 4 6.7 0.0 2.4 3 0 0 3 3 3 0 Alpha/beta hydrolase of unknown function (DUF915) Peptidase_S9 PF00326.21 gi|282163571|ref|YP_003355956.1| - 0.081 12.4 0.0 14 5.1 0.0 2.4 2 1 0 2 2 2 0 Prolyl oligopeptidase family FSH1 PF03959.13 gi|282163571|ref|YP_003355956.1| - 0.11 12.1 0.0 0.31 10.7 0.0 1.8 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Palm_thioest PF02089.15 gi|282163571|ref|YP_003355956.1| - 0.16 11.8 0.0 0.21 11.4 0.0 1.1 1 0 0 1 1 1 0 Palmitoyl protein thioesterase Methyltransf_11 PF08241.12 gi|282163572|ref|YP_003355957.1| - 8.1e-24 84.1 0.0 1.7e-23 83.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282163572|ref|YP_003355957.1| - 5.1e-23 81.6 0.0 9.3e-23 80.8 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|282163572|ref|YP_003355957.1| - 8.7e-23 80.8 0.0 1.3e-22 80.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282163572|ref|YP_003355957.1| - 6.4e-22 78.1 0.0 1.7e-21 76.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282163572|ref|YP_003355957.1| - 2.8e-18 66.5 0.0 5.1e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163572|ref|YP_003355957.1| - 1.9e-16 60.4 0.0 2.7e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|282163572|ref|YP_003355957.1| - 8.3e-10 38.4 0.0 1.2e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|282163572|ref|YP_003355957.1| - 8.5e-09 35.2 0.0 1.4e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|282163572|ref|YP_003355957.1| - 1.5e-08 34.6 0.0 3.2e-08 33.6 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|282163572|ref|YP_003355957.1| - 3.5e-06 26.6 0.0 0.00045 19.7 0.0 2.1 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.15 gi|282163572|ref|YP_003355957.1| - 2.1e-05 24.5 0.0 0.00053 19.9 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase GCD14 PF08704.10 gi|282163572|ref|YP_003355957.1| - 3.4e-05 23.6 0.0 5.8e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit MetW PF07021.12 gi|282163572|ref|YP_003355957.1| - 0.00015 21.4 0.0 0.00034 20.2 0.0 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|282163572|ref|YP_003355957.1| - 0.00041 20.4 0.0 0.00071 19.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|282163572|ref|YP_003355957.1| - 0.0017 17.9 0.0 0.01 15.3 0.0 2.1 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|282163572|ref|YP_003355957.1| - 0.0023 17.3 0.0 0.0031 16.8 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_18 PF12847.7 gi|282163572|ref|YP_003355957.1| - 0.0049 16.8 0.0 0.0083 16.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|282163572|ref|YP_003355957.1| - 0.0062 16.2 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F FtsJ PF01728.19 gi|282163572|ref|YP_003355957.1| - 0.012 15.7 0.0 0.084 13.0 0.0 2.1 2 1 0 2 2 2 0 FtsJ-like methyltransferase Methyltransf_9 PF08003.11 gi|282163572|ref|YP_003355957.1| - 0.016 14.2 0.0 0.024 13.6 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) Fibrillarin PF01269.17 gi|282163572|ref|YP_003355957.1| - 0.027 13.6 0.0 0.037 13.1 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin DOT1 PF08123.13 gi|282163572|ref|YP_003355957.1| - 0.027 14.0 0.0 0.046 13.2 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 Met_10 PF02475.16 gi|282163572|ref|YP_003355957.1| - 0.041 13.6 0.0 0.062 13.0 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein N6_N4_Mtase PF01555.18 gi|282163572|ref|YP_003355957.1| - 0.085 12.5 0.0 11 5.6 0.0 2.2 2 0 0 2 2 2 0 DNA methylase TehB PF03848.14 gi|282163572|ref|YP_003355957.1| - 0.13 11.6 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB HEPN PF05168.14 gi|282163572|ref|YP_003355957.1| - 0.15 12.2 0.4 14 5.9 0.1 3.1 3 0 0 3 3 3 0 HEPN domain Oxidored_nitro PF00148.19 gi|282163573|ref|YP_003355958.1| - 1e-75 255.0 0.0 1.8e-75 254.2 0.0 1.4 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase DUF3782 PF12644.7 gi|282163573|ref|YP_003355958.1| - 0.069 13.3 0.0 0.34 11.1 0.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) Oxidored_nitro PF00148.19 gi|282163574|ref|YP_003355959.1| - 7.4e-77 258.7 0.0 8.3e-77 258.6 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.18 gi|282163575|ref|YP_003355960.1| - 3.8e-93 311.8 0.1 4.5e-93 311.6 0.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|282163575|ref|YP_003355960.1| - 3.7e-10 39.9 0.0 5.9e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|282163575|ref|YP_003355960.1| - 2.6e-07 30.4 0.0 0.00023 20.7 0.1 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|282163575|ref|YP_003355960.1| - 3.1e-06 27.2 0.0 5e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|282163575|ref|YP_003355960.1| - 0.00017 20.9 0.0 0.00058 19.1 0.0 1.8 3 0 0 3 3 3 1 Anion-transporting ATPase AAA_16 PF13191.6 gi|282163575|ref|YP_003355960.1| - 0.0018 18.7 0.0 0.0048 17.3 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 gi|282163575|ref|YP_003355960.1| - 0.0042 16.8 0.0 0.0066 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|282163575|ref|YP_003355960.1| - 0.0068 16.3 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 NTPase MeaB PF03308.16 gi|282163575|ref|YP_003355960.1| - 0.0098 14.9 0.0 0.015 14.3 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 gi|282163575|ref|YP_003355960.1| - 0.017 14.3 0.1 0.042 13.0 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain MipZ PF09140.11 gi|282163575|ref|YP_003355960.1| - 0.019 14.3 0.0 0.034 13.4 0.0 1.5 1 0 0 1 1 1 0 ATPase MipZ RNA_helicase PF00910.22 gi|282163575|ref|YP_003355960.1| - 0.021 15.2 0.0 0.049 14.0 0.0 1.7 2 0 0 2 2 1 0 RNA helicase CBP_BcsQ PF06564.12 gi|282163575|ref|YP_003355960.1| - 0.032 13.7 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|282163575|ref|YP_003355960.1| - 0.043 13.4 0.0 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|282163575|ref|YP_003355960.1| - 0.048 13.9 0.0 0.44 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|282163575|ref|YP_003355960.1| - 0.053 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_5 PF07728.14 gi|282163575|ref|YP_003355960.1| - 0.08 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|282163575|ref|YP_003355960.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|282163575|ref|YP_003355960.1| - 0.14 12.6 0.0 0.22 12.1 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_7 PF12775.7 gi|282163575|ref|YP_003355960.1| - 0.15 11.6 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|282163575|ref|YP_003355960.1| - 0.2 11.5 0.0 0.46 10.4 0.0 1.6 2 0 0 2 2 2 0 NACHT domain DUF4097 PF13349.6 gi|282163576|ref|YP_003355961.1| - 2.3e-10 40.2 14.3 1.6e-08 34.2 13.9 2.1 1 1 0 1 1 1 1 Putative adhesin CUB_2 PF02408.20 gi|282163576|ref|YP_003355961.1| - 0.0067 16.2 0.4 0.05 13.4 0.1 2.2 1 1 1 2 2 2 1 CUB-like domain CUE PF02845.16 gi|282163576|ref|YP_003355961.1| - 0.062 13.0 0.5 5.8 6.7 0.0 3.5 3 0 0 3 3 3 0 CUE domain BBS2_Mid PF14783.6 gi|282163576|ref|YP_003355961.1| - 0.21 11.7 2.7 0.35 10.9 0.6 2.4 2 1 1 3 3 3 0 Ciliary BBSome complex subunit 2, middle region His_biosynth PF00977.21 gi|282163577|ref|YP_003355962.1| - 6.8e-73 244.9 3.5 7.7e-73 244.7 3.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|282163577|ref|YP_003355962.1| - 1.7e-09 37.2 0.2 1.9e-05 23.9 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|282163577|ref|YP_003355962.1| - 7.9e-08 32.1 0.6 4.9e-07 29.5 0.2 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase DHO_dh PF01180.21 gi|282163577|ref|YP_003355962.1| - 4.1e-06 26.2 1.2 1.4e-05 24.5 0.2 2.0 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|282163577|ref|YP_003355962.1| - 9.1e-06 24.9 1.7 0.0016 17.5 0.2 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 gi|282163577|ref|YP_003355962.1| - 1e-05 25.0 0.8 0.02 14.2 0.2 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.14 gi|282163577|ref|YP_003355962.1| - 1.7e-05 24.1 1.6 0.015 14.5 0.3 2.6 1 1 2 3 3 3 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.17 gi|282163577|ref|YP_003355962.1| - 3.2e-05 23.3 0.7 0.00049 19.5 0.3 2.3 2 0 0 2 2 2 1 Thiamine monophosphate synthase Trp_syntA PF00290.20 gi|282163577|ref|YP_003355962.1| - 5.1e-05 22.2 1.2 0.0035 16.2 0.3 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain G3P_antiterm PF04309.12 gi|282163577|ref|YP_003355962.1| - 0.00014 21.3 0.8 0.0059 16.0 0.2 2.3 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator IGPS PF00218.21 gi|282163577|ref|YP_003355962.1| - 0.00037 19.7 0.1 0.0038 16.4 0.1 2.1 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase PEP_mutase PF13714.6 gi|282163577|ref|YP_003355962.1| - 0.00041 19.9 0.1 0.31 10.5 0.0 2.4 1 1 0 2 2 2 2 Phosphoenolpyruvate phosphomutase DUF561 PF04481.12 gi|282163577|ref|YP_003355962.1| - 0.002 17.3 1.8 0.003 16.8 1.6 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF561) PcrB PF01884.17 gi|282163577|ref|YP_003355962.1| - 0.0047 16.4 1.7 0.093 12.2 0.1 2.2 1 1 0 2 2 2 1 PcrB family FMN_dh PF01070.18 gi|282163577|ref|YP_003355962.1| - 0.0071 15.4 0.4 0.037 13.1 0.0 1.9 2 0 0 2 2 2 1 FMN-dependent dehydrogenase DegV PF02645.16 gi|282163577|ref|YP_003355962.1| - 0.012 15.0 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein, DegV family COG1307 DeoC PF01791.9 gi|282163577|ref|YP_003355962.1| - 0.019 14.6 0.0 0.079 12.6 0.0 1.8 2 0 0 2 2 2 0 DeoC/LacD family aldolase Ribul_P_3_epim PF00834.19 gi|282163577|ref|YP_003355962.1| - 0.06 12.7 0.9 6.1 6.2 0.1 2.4 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Peptidase_U32 PF01136.19 gi|282163577|ref|YP_003355962.1| - 0.063 12.4 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Peptidase family U32 DUF488 PF04343.13 gi|282163578|ref|YP_003355963.1| - 1.4e-29 103.2 1.3 1.5e-29 103.0 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 Acid_phosphat_B PF03767.14 gi|282163578|ref|YP_003355963.1| - 0.055 13.1 0.3 0.071 12.7 0.3 1.1 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) MazG PF03819.17 gi|282163579|ref|YP_003355964.1| - 2.2e-06 27.7 0.1 3.4e-06 27.1 0.1 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 gi|282163579|ref|YP_003355964.1| - 0.0011 19.3 0.7 0.0013 19.1 0.5 1.6 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Gal4_dimer PF03902.13 gi|282163579|ref|YP_003355964.1| - 0.081 13.1 0.2 0.18 12.0 0.2 1.6 1 1 1 2 2 2 0 Gal4-like dimerisation domain RDD PF06271.12 gi|282163580|ref|YP_003355965.1| - 4.6e-13 49.6 4.0 4.6e-13 49.6 4.0 1.6 2 0 0 2 2 2 1 RDD family GYF_2 PF14237.6 gi|282163580|ref|YP_003355965.1| - 1e-11 44.4 0.1 1.6e-11 43.8 0.1 1.3 1 0 0 1 1 1 1 GYF domain 2 CarboxypepD_reg PF13620.6 gi|282163581|ref|YP_003355966.1| - 0.0012 19.1 4.2 0.012 15.8 4.2 2.3 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain FlgD_ig PF13860.6 gi|282163581|ref|YP_003355966.1| - 0.0022 17.8 0.1 0.033 14.0 0.0 2.3 2 0 0 2 2 2 1 FlgD Ig-like domain CarbopepD_reg_2 PF13715.6 gi|282163581|ref|YP_003355966.1| - 0.0054 16.7 0.4 0.011 15.7 0.4 1.5 1 0 0 1 1 1 1 CarboxypepD_reg-like domain Flavodoxin_5 PF12724.7 gi|282163582|ref|YP_003355967.1| - 2e-07 31.4 0.1 5.3e-05 23.5 0.1 2.1 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_2 PF02525.17 gi|282163582|ref|YP_003355967.1| - 7.9e-06 25.7 0.5 3.6e-05 23.6 0.5 1.9 1 1 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|282163582|ref|YP_003355967.1| - 0.00011 22.0 0.7 0.00022 21.0 0.7 1.6 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|282163582|ref|YP_003355967.1| - 0.0028 17.4 0.0 0.03 14.0 0.0 2.0 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|282163582|ref|YP_003355967.1| - 0.0028 17.8 0.1 0.0086 16.3 0.1 1.8 1 1 0 1 1 1 1 Flavodoxin Catalase_C PF18011.1 gi|282163582|ref|YP_003355967.1| - 0.22 11.1 1.0 1 9.0 1.0 2.1 1 1 0 1 1 1 0 C-terminal domain found in long catalases Transposase_mut PF00872.18 gi|282163583|ref|YP_003355968.1| - 1e-104 350.5 0.0 1.2e-104 350.2 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|282163583|ref|YP_003355968.1| - 1.2e-11 44.8 0.0 2.8e-11 43.7 0.0 1.6 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_IS66 PF03050.14 gi|282163583|ref|YP_003355968.1| - 5.9e-06 26.0 0.0 2.2e-05 24.1 0.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.6 gi|282163583|ref|YP_003355968.1| - 7.8e-06 26.2 0.1 0.027 14.7 0.0 2.6 2 0 0 2 2 2 2 DDE domain DDE_Tnp_ISL3 PF01610.17 gi|282163583|ref|YP_003355968.1| - 0.029 14.1 0.0 0.063 13.0 0.0 1.7 1 1 0 1 1 1 0 Transposase DsrH PF04077.12 gi|282163583|ref|YP_003355968.1| - 0.076 13.1 0.0 0.41 10.8 0.0 2.1 2 0 0 2 2 2 0 DsrH like protein DUF3486 PF11985.8 gi|282163583|ref|YP_003355968.1| - 0.095 13.1 0.4 11 6.4 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3486) Flavodoxin_5 PF12724.7 gi|282163584|ref|YP_003355969.1| - 2.6e-27 95.9 0.1 3.1e-27 95.6 0.1 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|282163584|ref|YP_003355969.1| - 7e-10 39.3 0.3 6.8e-09 36.1 0.1 2.2 1 1 0 2 2 2 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|282163584|ref|YP_003355969.1| - 8.9e-09 35.2 0.2 1e-08 35.0 0.2 1.3 1 1 0 1 1 1 1 Flavodoxin domain PTS_IIB PF02302.17 gi|282163584|ref|YP_003355969.1| - 0.00012 22.7 0.1 0.077 13.7 0.0 2.2 2 0 0 2 2 2 2 PTS system, Lactose/Cellobiose specific IIB subunit LMWPc PF01451.21 gi|282163584|ref|YP_003355969.1| - 0.0026 18.2 0.1 0.15 12.4 0.0 2.3 2 0 0 2 2 2 1 Low molecular weight phosphotyrosine protein phosphatase PS_pyruv_trans PF04230.13 gi|282163584|ref|YP_003355969.1| - 0.0052 16.7 0.0 0.0076 16.2 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase TetR_N PF00440.23 gi|282163585|ref|YP_003355970.1| - 3e-18 65.3 1.7 3.9e-18 65.0 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 gi|282163585|ref|YP_003355970.1| - 0.002 18.5 0.0 0.0037 17.6 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|282163585|ref|YP_003355970.1| - 0.0024 18.0 0.1 0.0069 16.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase Sigma70_r4_2 PF08281.12 gi|282163585|ref|YP_003355970.1| - 0.0032 17.1 0.1 0.032 13.9 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 TetR_C_7 PF14246.6 gi|282163585|ref|YP_003355970.1| - 0.0086 16.1 0.0 0.021 14.8 0.0 1.6 2 0 0 2 2 2 1 AefR-like transcriptional repressor, C-terminal domain HTH_24 PF13412.6 gi|282163585|ref|YP_003355970.1| - 0.012 15.2 0.1 0.14 11.8 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|282163585|ref|YP_003355970.1| - 0.019 14.8 0.0 0.041 13.7 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|282163585|ref|YP_003355970.1| - 0.03 14.1 0.0 0.082 12.7 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain MS_channel PF00924.18 gi|282163586|ref|YP_003355971.1| - 5.8e-15 55.4 3.8 5.8e-15 55.4 3.8 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel Colicin_V PF02674.16 gi|282163586|ref|YP_003355971.1| - 0.0016 18.5 10.5 0.03 14.3 7.3 2.6 1 1 1 2 2 2 2 Colicin V production protein SieB PF14163.6 gi|282163586|ref|YP_003355971.1| - 0.005 16.3 0.5 0.96 8.9 0.0 2.3 2 0 0 2 2 2 2 Super-infection exclusion protein B EI24 PF07264.11 gi|282163586|ref|YP_003355971.1| - 0.017 15.3 2.3 0.032 14.5 2.3 1.4 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) TM_helix PF05552.12 gi|282163586|ref|YP_003355971.1| - 0.036 14.0 0.1 0.036 14.0 0.1 4.5 5 0 0 5 5 5 0 Conserved TM helix DUF4271 PF14093.6 gi|282163586|ref|YP_003355971.1| - 0.1 12.5 6.7 0.31 10.9 6.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4271) Phage_holin_6_1 PF09682.10 gi|282163586|ref|YP_003355971.1| - 0.21 12.0 2.8 1.1 9.7 0.4 2.5 2 1 0 2 2 2 0 Bacteriophage holin of superfamily 6 (Holin_LLH) Phage_holin_3_6 PF07332.11 gi|282163586|ref|YP_003355971.1| - 0.28 11.2 0.1 0.28 11.2 0.1 3.1 3 0 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III CBP_BcsF PF11120.8 gi|282163586|ref|YP_003355971.1| - 4.7 7.4 6.9 1.9 8.6 0.2 2.8 3 0 0 3 3 3 0 Cellulose biosynthesis protein BcsF DUF1129 PF06570.11 gi|282163586|ref|YP_003355971.1| - 6.2 6.3 8.9 0.98 8.9 3.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) MS_channel PF00924.18 gi|282163587|ref|YP_003355972.1| - 2.5e-28 99.1 0.1 2.8e-28 98.9 0.1 1.0 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF5130 PF17174.4 gi|282163587|ref|YP_003355972.1| - 0.021 15.0 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5130) DUF4945 PF16303.5 gi|282163587|ref|YP_003355972.1| - 0.071 13.0 0.1 0.43 10.5 0.0 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4945) UDG PF03167.19 gi|282163588|ref|YP_003355973.1| - 3.1e-46 157.2 0.0 3.7e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF2070 PF09843.9 gi|282163589|ref|YP_003355974.1| - 1e-185 618.3 15.6 1.2e-185 618.1 15.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) GRASP55_65 PF04495.14 gi|282163589|ref|YP_003355974.1| - 0.12 12.7 0.0 0.41 11.0 0.0 1.9 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain PIG-P PF08510.12 gi|282163589|ref|YP_003355974.1| - 3.2 7.7 9.1 0.17 11.8 2.0 2.4 2 0 0 2 2 2 0 PIG-P DUF555 PF04475.12 gi|282163590|ref|YP_003355975.1| - 7.7e-50 167.4 0.1 9.3e-50 167.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.6 gi|282163590|ref|YP_003355975.1| - 0.01 15.5 0.2 0.016 14.9 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|282163590|ref|YP_003355975.1| - 0.033 13.6 0.0 0.05 13.0 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Dodecin PF07311.12 gi|282163590|ref|YP_003355975.1| - 0.058 13.7 0.1 0.14 12.5 0.0 1.6 1 1 0 1 1 1 0 Dodecin DUF357 PF04010.13 gi|282163591|ref|YP_003355976.1| - 2.6e-29 101.1 0.1 3.1e-29 100.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF87 PF01935.17 gi|282163592|ref|YP_003355977.1| - 3.6e-40 138.5 0.0 6.1e-40 137.7 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|282163592|ref|YP_003355977.1| - 2.7e-08 33.9 0.7 6.1e-08 32.7 0.0 2.0 2 0 0 2 2 2 1 HAS barrel domain DUF853 PF05872.12 gi|282163592|ref|YP_003355977.1| - 6.1e-06 25.1 0.0 0.036 12.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|282163592|ref|YP_003355977.1| - 5.8e-05 22.2 0.0 0.0044 16.0 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|282163592|ref|YP_003355977.1| - 0.00053 19.0 0.0 0.0052 15.8 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain AAA PF00004.29 gi|282163592|ref|YP_003355977.1| - 0.029 14.8 0.0 0.66 10.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 gi|282163592|ref|YP_003355977.1| - 0.042 13.9 0.0 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.18 gi|282163592|ref|YP_003355977.1| - 0.095 12.0 0.0 0.61 9.4 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family TP_methylase PF00590.20 gi|282163594|ref|YP_003355979.1| - 3.7e-19 69.5 0.1 4.3e-19 69.3 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Met_10 PF02475.16 gi|282163595|ref|YP_003355980.1| - 1.4e-61 207.7 0.3 2.1e-61 207.1 0.3 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|282163595|ref|YP_003355980.1| - 1.1e-16 60.4 0.3 1.1e-16 60.4 0.3 2.0 2 0 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|282163595|ref|YP_003355980.1| - 7e-07 29.9 0.0 1.8e-06 28.5 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.14 gi|282163595|ref|YP_003355980.1| - 8.8e-07 28.6 0.0 1.6e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|282163595|ref|YP_003355980.1| - 1.3e-06 28.2 0.0 2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|282163595|ref|YP_003355980.1| - 2.6e-05 23.8 0.0 4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|282163595|ref|YP_003355980.1| - 0.0023 17.5 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PRMT5 PF05185.16 gi|282163595|ref|YP_003355980.1| - 0.0024 17.8 0.0 0.0044 16.9 0.0 1.4 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase RrnaAD PF00398.20 gi|282163595|ref|YP_003355980.1| - 0.0027 16.8 0.0 0.0045 16.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 gi|282163595|ref|YP_003355980.1| - 0.0036 17.1 0.0 0.007 16.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|282163595|ref|YP_003355980.1| - 0.014 14.4 0.0 0.021 13.8 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase TRM PF02005.16 gi|282163595|ref|YP_003355980.1| - 0.014 14.6 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_11 PF08241.12 gi|282163595|ref|YP_003355980.1| - 0.043 14.5 0.0 0.26 11.9 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain Lactonase PF10282.9 gi|282163597|ref|YP_003355982.1| - 8.7e-21 74.5 1.2 3.7e-06 26.4 0.1 5.3 1 1 3 4 4 4 4 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.16 gi|282163597|ref|YP_003355982.1| - 9.6e-07 27.7 0.6 0.095 11.2 0.0 3.1 1 1 1 3 3 3 3 Cytochrome D1 heme domain SGL PF08450.12 gi|282163597|ref|YP_003355982.1| - 1.3e-06 28.2 10.8 0.34 10.5 0.4 4.9 1 1 4 5 5 5 4 SMP-30/Gluconolactonase/LRE-like region FlaG PF03646.15 gi|282163597|ref|YP_003355982.1| - 1.3e-06 28.4 20.3 1.1 9.5 0.1 7.0 7 0 0 7 7 7 2 FlaG protein SBP56 PF05694.11 gi|282163597|ref|YP_003355982.1| - 5.8e-05 22.1 0.1 2.2 7.0 0.0 4.1 2 1 2 4 4 4 2 56kDa selenium binding protein (SBP56) NHL PF01436.21 gi|282163597|ref|YP_003355982.1| - 0.00094 19.1 14.2 1.2 9.4 0.0 7.3 8 0 0 8 8 8 1 NHL repeat Arylesterase PF01731.20 gi|282163597|ref|YP_003355982.1| - 0.052 13.7 5.8 2 8.6 0.1 4.3 4 2 2 6 6 6 0 Arylesterase Arm-DNA-bind_3 PF13356.6 gi|282163597|ref|YP_003355982.1| - 0.2 12.1 0.0 1e+02 3.4 0.0 3.9 2 2 2 4 4 4 0 Arm DNA-binding domain Med13_N PF11597.8 gi|282163597|ref|YP_003355982.1| - 3.4 7.0 15.3 8.8 5.6 0.1 5.0 5 1 2 7 7 7 0 Mediator complex subunit 13 N-terminal TALPID3 PF15324.6 gi|282163597|ref|YP_003355982.1| - 5.7 4.5 6.4 8.5 3.9 6.4 1.2 1 0 0 1 1 1 0 Hedgehog signalling target DUF3951 PF13131.6 gi|282163598|ref|YP_003355983.1| - 0.76 10.0 7.5 0.8 9.9 3.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3951) NDUF_B4 PF07225.12 gi|282163598|ref|YP_003355983.1| - 1.5 8.7 3.6 0.39 10.6 0.3 1.6 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) Comm PF15957.5 gi|282163598|ref|YP_003355983.1| - 1.8 8.9 9.0 0.097 13.0 1.8 2.1 1 1 1 2 2 2 0 Commissureless NHL PF01436.21 gi|282163600|ref|YP_003355985.1| - 1.5e-38 128.9 39.0 8.4e-05 22.4 0.1 12.9 12 0 0 12 12 12 11 NHL repeat SBBP PF06739.11 gi|282163600|ref|YP_003355985.1| - 3.5e-25 87.7 43.1 0.0018 18.2 0.3 12.2 11 0 0 11 11 11 9 Beta-propeller repeat SGL PF08450.12 gi|282163600|ref|YP_003355985.1| - 5.4e-12 45.8 9.7 0.017 14.7 0.2 7.8 1 1 5 7 7 7 4 SMP-30/Gluconolactonase/LRE-like region FlgD_ig PF13860.6 gi|282163600|ref|YP_003355985.1| - 3.2e-08 33.3 0.1 1.6e-07 31.1 0.0 2.4 2 0 0 2 2 1 1 FlgD Ig-like domain Arylesterase PF01731.20 gi|282163600|ref|YP_003355985.1| - 3.5e-05 23.9 8.6 0.39 10.9 0.1 6.9 3 2 5 8 8 8 1 Arylesterase CarboxypepD_reg PF13620.6 gi|282163600|ref|YP_003355985.1| - 0.0012 19.0 7.6 0.0041 17.4 5.6 2.8 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF1737 PF08410.10 gi|282163600|ref|YP_003355985.1| - 0.0086 15.9 0.0 3 7.8 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1737) SdiA-regulated PF06977.11 gi|282163600|ref|YP_003355985.1| - 0.015 14.6 2.0 35 3.5 0.0 5.7 5 2 2 7 7 7 0 SdiA-regulated Big_1 PF02369.16 gi|282163600|ref|YP_003355985.1| - 0.029 14.4 0.5 0.029 14.4 0.5 4.3 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) DUF1935 PF09149.10 gi|282163600|ref|YP_003355985.1| - 0.04 14.3 0.1 0.04 14.3 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1935) Invasin_D3 PF09134.10 gi|282163600|ref|YP_003355985.1| - 0.072 13.4 2.9 1.3 9.4 0.0 3.9 2 1 1 3 3 3 0 Invasin, domain 3 US22 PF02393.16 gi|282163600|ref|YP_003355985.1| - 0.086 13.1 0.4 32 4.8 0.1 4.5 5 2 1 6 6 6 0 US22 like Imm70 PF15601.6 gi|282163600|ref|YP_003355985.1| - 0.16 11.5 0.3 2.7 7.5 0.0 3.1 3 0 0 3 3 3 0 Immunity protein 70 LapA_dom PF06305.11 gi|282163601|ref|YP_003355986.1| - 0.035 13.9 1.2 0.062 13.1 1.2 1.4 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain ArnB_C PF18677.1 gi|282163602|ref|YP_003355987.1| - 0.034 14.2 0.0 0.1 12.7 0.0 1.8 2 0 0 2 2 2 0 Archaellum regulatory network B, C-terminal domain Rad10 PF03834.14 gi|282163602|ref|YP_003355987.1| - 0.16 12.0 0.3 0.24 11.4 0.3 1.4 1 0 0 1 1 1 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) Ank_2 PF12796.7 gi|282163603|ref|YP_003355988.1| - 1.7e-14 54.2 0.3 3.9e-14 53.0 0.2 1.6 1 1 1 2 2 2 1 Ankyrin repeats (3 copies) Ank_5 PF13857.6 gi|282163603|ref|YP_003355988.1| - 2.6e-12 46.7 0.1 6.4e-07 29.5 0.0 2.2 1 1 1 2 2 2 2 Ankyrin repeats (many copies) Ank_4 PF13637.6 gi|282163603|ref|YP_003355988.1| - 9.6e-12 45.2 0.2 6.7e-06 26.6 0.0 2.7 1 1 2 3 3 3 3 Ankyrin repeats (many copies) Ank PF00023.30 gi|282163603|ref|YP_003355988.1| - 9.2e-10 38.5 0.0 4.4e-06 26.9 0.0 2.5 2 0 0 2 2 2 2 Ankyrin repeat Ank_3 PF13606.6 gi|282163603|ref|YP_003355988.1| - 1.7e-09 37.1 0.0 1.9e-05 24.7 0.0 2.8 3 0 0 3 3 3 2 Ankyrin repeat Metallophos_2 PF12850.7 gi|282163604|ref|YP_003355989.1| - 1.3e-09 38.5 0.3 2.6e-09 37.5 0.3 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AMP-binding PF00501.28 gi|282163605|ref|YP_003355990.1| - 1.4e-79 267.7 0.1 1.7e-79 267.4 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|282163605|ref|YP_003355990.1| - 1.8e-24 86.5 1.5 4.4e-24 85.2 1.5 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Cupin_2 PF07883.11 gi|282163606|ref|YP_003355991.1| - 4.4e-15 55.2 0.0 9e-15 54.1 0.0 1.6 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.7 gi|282163606|ref|YP_003355991.1| - 1.6e-09 37.6 0.7 2.8e-09 36.9 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|282163606|ref|YP_003355991.1| - 7.9e-07 29.0 0.1 1.5e-06 28.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|282163606|ref|YP_003355991.1| - 0.0012 19.1 0.0 0.0019 18.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 gi|282163606|ref|YP_003355991.1| - 0.0075 16.2 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_26 PF13443.6 gi|282163606|ref|YP_003355991.1| - 0.062 13.7 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain CBM39 PF15886.5 gi|282163606|ref|YP_003355991.1| - 0.13 12.2 0.1 0.38 10.6 0.1 2.0 1 1 0 1 1 1 0 Carbohydrate binding domain (family 32) dCMP_cyt_deam_1 PF00383.23 gi|282163607|ref|YP_003355992.1| - 3.4e-24 84.6 0.6 4.3e-24 84.3 0.6 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|282163607|ref|YP_003355992.1| - 1.2e-23 83.4 0.1 1.8e-23 82.8 0.1 1.2 1 0 0 1 1 1 1 MafB19-like deaminase SNAD4 PF18750.1 gi|282163607|ref|YP_003355992.1| - 0.0096 16.0 0.4 0.014 15.5 0.4 1.2 1 0 0 1 1 1 1 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC2 PF18772.1 gi|282163607|ref|YP_003355992.1| - 0.057 13.5 0.3 0.08 13.0 0.3 1.1 1 0 0 1 1 1 0 APOBEC2 NAD2 PF18782.1 gi|282163607|ref|YP_003355992.1| - 0.17 12.0 0.0 0.2 11.7 0.0 1.1 1 0 0 1 1 1 0 Novel AID APOBEC clade 2 APOBEC3 PF18771.1 gi|282163607|ref|YP_003355992.1| - 0.17 12.0 0.2 0.24 11.5 0.2 1.2 1 0 0 1 1 1 0 APOBEC3 NAD1 PF18778.1 gi|282163607|ref|YP_003355992.1| - 0.22 11.6 1.1 0.3 11.1 1.1 1.1 1 0 0 1 1 1 0 Novel AID APOBEC clade 1 Bd3614-deam PF14439.6 gi|282163607|ref|YP_003355992.1| - 1.4 9.0 7.2 3.7 7.6 0.1 2.3 1 1 1 2 2 2 0 Bd3614-like deaminase Zn-ribbon_8 PF09723.10 gi|282163608|ref|YP_003355993.1| - 1.8e-05 24.7 2.4 2.8e-05 24.1 2.4 1.3 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|282163608|ref|YP_003355993.1| - 0.00016 21.7 0.5 0.00016 21.6 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|282163608|ref|YP_003355993.1| - 0.0021 18.0 1.5 0.82 9.7 0.2 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|282163608|ref|YP_003355993.1| - 0.0027 17.6 0.4 0.003 17.5 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbons TFIIS_C PF01096.18 gi|282163608|ref|YP_003355993.1| - 0.0042 16.9 2.5 0.41 10.5 0.2 2.1 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zf-IS66 PF13005.7 gi|282163608|ref|YP_003355993.1| - 0.014 15.8 0.5 1.2 9.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1 PF03811.13 gi|282163608|ref|YP_003355993.1| - 0.018 14.7 1.6 1.3 8.8 0.2 2.3 2 0 0 2 2 2 0 InsA N-terminal domain Zn_ribbon_SprT PF17283.2 gi|282163608|ref|YP_003355993.1| - 0.027 14.4 0.4 1.1 9.2 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn_Tnp_IS91 PF14319.6 gi|282163608|ref|YP_003355993.1| - 0.031 14.3 0.5 0.04 13.9 0.5 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain PhnA_Zn_Ribbon PF08274.12 gi|282163608|ref|YP_003355993.1| - 0.067 13.2 5.4 0.19 11.7 1.7 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF35_N PF12172.8 gi|282163608|ref|YP_003355993.1| - 0.12 12.2 2.5 2.5 8.1 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-H2C2_2 PF13465.6 gi|282163608|ref|YP_003355993.1| - 0.21 12.1 5.1 0.54 10.8 0.5 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-trcl PF13451.6 gi|282163608|ref|YP_003355993.1| - 0.88 9.5 5.9 0.4 10.6 1.0 2.1 1 1 0 2 2 2 0 Probable zinc-ribbon domain zf_UBZ PF18439.1 gi|282163608|ref|YP_003355993.1| - 1.3 8.7 4.0 2.1 8.0 0.4 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ISL3 PF14690.6 gi|282163608|ref|YP_003355993.1| - 3.1 8.5 6.8 10 6.9 0.5 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Amidase PF01425.21 gi|282163609|ref|YP_003355994.1| - 7.1e-107 358.2 0.0 9e-107 357.8 0.0 1.1 1 0 0 1 1 1 1 Amidase UPF0126 PF03458.13 gi|282163612|ref|YP_003355997.1| - 3.6e-44 148.5 24.7 3.5e-23 81.3 11.7 2.1 2 0 0 2 2 2 2 UPF0126 domain Fst_toxin PF13955.6 gi|282163612|ref|YP_003355997.1| - 0.031 14.2 0.4 0.11 12.5 0.4 2.0 1 0 0 1 1 1 0 Toxin Fst, type I toxin-antitoxin system PolyA_pol PF01743.20 gi|282163612|ref|YP_003355997.1| - 0.088 13.2 0.1 16 5.9 0.0 2.2 2 0 0 2 2 2 0 Poly A polymerase head domain Pilosulin PF17499.2 gi|282163612|ref|YP_003355997.1| - 0.29 11.3 0.2 0.29 11.3 0.2 1.7 2 0 0 2 2 2 0 Ant venom peptides CARDB PF07705.11 gi|282163614|ref|YP_003355999.1| - 6.2e-05 23.2 0.1 9e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 CARDB BsuPI PF12690.7 gi|282163614|ref|YP_003355999.1| - 0.00088 19.3 0.1 0.94 9.6 0.0 2.2 2 0 0 2 2 2 2 Intracellular proteinase inhibitor DUF2393 PF09624.10 gi|282163614|ref|YP_003355999.1| - 0.0011 18.9 0.1 0.0017 18.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2393) Arrestin_C PF02752.22 gi|282163614|ref|YP_003355999.1| - 0.0045 17.4 0.1 0.0088 16.5 0.1 1.4 1 1 0 1 1 1 1 Arrestin (or S-antigen), C-terminal domain TRAP_beta PF05753.14 gi|282163614|ref|YP_003355999.1| - 0.0086 15.5 0.0 0.023 14.1 0.0 1.7 1 1 0 1 1 1 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.9 gi|282163614|ref|YP_003355999.1| - 0.024 14.9 0.2 2.4 8.5 0.0 2.6 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|282163614|ref|YP_003355999.1| - 0.037 14.3 0.0 0.086 13.1 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function DUF11 A2M_BRD PF07703.14 gi|282163614|ref|YP_003355999.1| - 0.063 13.6 0.1 0.11 12.9 0.1 1.6 1 1 0 1 1 1 0 Alpha-2-macroglobulin bait region domain Rep_1B PF17873.1 gi|282163614|ref|YP_003355999.1| - 0.12 12.2 0.1 1.2 9.0 0.0 2.4 3 0 0 3 3 3 0 Replicase polyprotein 1ab N_BRCA1_IG PF16158.5 gi|282163614|ref|YP_003355999.1| - 0.13 13.0 0.0 0.19 12.5 0.0 1.2 1 0 0 1 1 1 0 Ig-like domain from next to BRCA1 gene DUF2510 PF10708.9 gi|282163615|ref|YP_003356000.1| - 0.0011 18.6 1.2 0.0023 17.6 1.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2510) RsgA_GTPase PF03193.16 gi|282163616|ref|YP_003356001.1| - 3e-48 163.9 0.0 4.1e-48 163.5 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase ABC_tran PF00005.27 gi|282163616|ref|YP_003356001.1| - 1.9e-07 31.7 0.2 3.8e-07 30.7 0.2 1.6 1 1 0 1 1 1 1 ABC transporter MMR_HSR1 PF01926.23 gi|282163616|ref|YP_003356001.1| - 2.9e-06 27.3 0.1 1.1e-05 25.5 0.0 1.9 2 1 0 2 2 2 1 50S ribosome-binding GTPase RsgA_N PF16745.5 gi|282163616|ref|YP_003356001.1| - 1.9e-05 24.3 0.0 3.6e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 RsgA N-terminal domain FeoB_N PF02421.18 gi|282163616|ref|YP_003356001.1| - 7.8e-05 22.2 0.0 0.039 13.5 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B AAA_29 PF13555.6 gi|282163616|ref|YP_003356001.1| - 0.0015 18.3 0.1 0.0027 17.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Cdh1_DBD_1 PF18196.1 gi|282163616|ref|YP_003356001.1| - 0.0034 17.7 0.2 0.0069 16.7 0.2 1.4 1 0 0 1 1 1 1 Chromodomain helicase DNA-binding domain 1 PduV-EutP PF10662.9 gi|282163616|ref|YP_003356001.1| - 0.0037 17.0 0.4 3.7 7.3 0.2 2.6 2 1 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|282163616|ref|YP_003356001.1| - 0.008 15.7 0.7 0.1 12.1 0.1 2.4 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|282163616|ref|YP_003356001.1| - 0.01 15.2 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 0 AIG1 family AAA_28 PF13521.6 gi|282163616|ref|YP_003356001.1| - 0.023 14.9 0.1 0.044 14.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|282163616|ref|YP_003356001.1| - 0.033 14.6 0.4 0.064 13.6 0.4 1.6 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|282163616|ref|YP_003356001.1| - 0.06 12.6 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin G-alpha PF00503.20 gi|282163616|ref|YP_003356001.1| - 0.069 12.3 0.1 0.18 10.9 0.0 1.5 1 1 0 1 1 1 0 G-protein alpha subunit AAA_7 PF12775.7 gi|282163616|ref|YP_003356001.1| - 0.073 12.6 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region IIGP PF05049.13 gi|282163616|ref|YP_003356001.1| - 0.076 12.1 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_18 PF13238.6 gi|282163616|ref|YP_003356001.1| - 0.08 13.5 0.0 0.17 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.21 gi|282163616|ref|YP_003356001.1| - 0.082 12.6 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 Guanylate kinase Septin PF00735.18 gi|282163616|ref|YP_003356001.1| - 0.11 11.8 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Septin Ras PF00071.22 gi|282163616|ref|YP_003356001.1| - 0.11 12.1 0.0 2 8.0 0.0 2.3 2 0 0 2 2 2 0 Ras family AAA_21 PF13304.6 gi|282163616|ref|YP_003356001.1| - 0.11 12.2 0.2 0.24 11.2 0.1 1.6 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system IstB_IS21 PF01695.17 gi|282163616|ref|YP_003356001.1| - 0.14 11.9 0.1 0.29 10.8 0.1 1.6 1 1 0 1 1 1 0 IstB-like ATP binding protein Roc PF08477.13 gi|282163616|ref|YP_003356001.1| - 0.18 12.0 1.6 0.35 11.1 0.4 2.1 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase KAP_NTPase PF07693.14 gi|282163616|ref|YP_003356001.1| - 0.24 10.6 0.6 1.5 8.0 0.3 2.3 2 1 0 2 2 2 0 KAP family P-loop domain Dynamin_N PF00350.23 gi|282163616|ref|YP_003356001.1| - 1.3 9.0 5.7 3.8 7.5 2.2 3.0 2 1 0 2 2 2 0 Dynamin family AAA_23 PF13476.6 gi|282163616|ref|YP_003356001.1| - 3.1 8.2 6.9 13 6.2 6.0 2.3 2 1 0 2 2 1 0 AAA domain PrsW-protease PF13367.6 gi|282163617|ref|YP_003356002.1| - 3.6e-09 36.3 13.8 5.6e-08 32.5 13.8 2.6 1 1 0 1 1 1 1 PrsW family intramembrane metalloprotease Sigma_reg_N PF13800.6 gi|282163618|ref|YP_003356003.1| - 0.13 12.5 0.0 0.26 11.6 0.0 1.5 2 0 0 2 2 2 0 Sigma factor regulator N-terminal UDPG_MGDP_dh PF00984.19 gi|282163619|ref|YP_003356004.1| - 3.4e-21 75.3 0.0 7.2e-21 74.2 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain Glycos_transf_2 PF00535.26 gi|282163619|ref|YP_003356004.1| - 2.2e-19 69.9 0.9 5.7e-19 68.6 0.3 2.0 3 0 0 3 3 3 1 Glycosyl transferase family 2 UDPG_MGDP_dh_N PF03721.14 gi|282163619|ref|YP_003356004.1| - 6.9e-14 51.9 0.0 2.2e-13 50.2 0.0 1.8 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_tranf_2_3 PF13641.6 gi|282163619|ref|YP_003356004.1| - 4.2e-09 36.6 0.0 1e-08 35.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|282163619|ref|YP_003356004.1| - 0.0029 17.1 0.2 0.013 15.0 0.2 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Mcp5_PH PF12814.7 gi|282163619|ref|YP_003356004.1| - 0.0075 16.4 0.2 0.026 14.7 0.2 1.9 1 0 0 1 1 1 1 Meiotic cell cortex C-terminal pleckstrin homology Radical_SAM PF04055.21 gi|282163620|ref|YP_003356005.1| - 3.3e-13 50.3 0.0 4.9e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|282163620|ref|YP_003356005.1| - 9.7e-07 29.2 0.7 9.7e-07 29.2 0.7 2.2 3 0 0 3 3 3 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|282163620|ref|YP_003356005.1| - 4.8e-05 23.5 0.1 0.00012 22.1 0.1 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|282163620|ref|YP_003356005.1| - 0.0016 18.7 0.1 0.0028 17.9 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Glycos_transf_2 PF00535.26 gi|282163621|ref|YP_003356006.1| - 6.5e-06 26.1 0.0 9.8e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282163621|ref|YP_003356006.1| - 0.0091 15.9 0.0 0.4 10.5 0.0 2.8 1 1 1 2 2 2 1 Glycosyltransferase like family 2 His_Phos_1 PF00300.22 gi|282163622|ref|YP_003356007.1| - 9.3e-15 54.8 0.0 2e-14 53.8 0.0 1.5 1 1 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Glycos_transf_2 PF00535.26 gi|282163622|ref|YP_003356007.1| - 5.2e-12 45.9 3.1 1.4e-09 38.0 0.0 3.6 2 1 0 3 3 3 2 Glycosyl transferase family 2 Radical_SAM PF04055.21 gi|282163623|ref|YP_003356008.1| - 4.2e-08 33.8 0.0 5.8e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|282163623|ref|YP_003356008.1| - 4.9e-06 26.7 0.1 8.6e-06 25.9 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|282163623|ref|YP_003356008.1| - 2.1e-05 24.8 0.1 3.4e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PRANC PF09372.10 gi|282163627|ref|YP_003356012.1| - 0.0034 17.7 0.2 0.0095 16.2 0.2 1.7 1 0 0 1 1 1 1 PRANC domain PriA_C PF18074.1 gi|282163627|ref|YP_003356012.1| - 0.048 14.5 0.1 0.14 13.0 0.1 1.7 1 0 0 1 1 1 0 Primosomal protein N C-terminal domain RVT_thumb PF06817.14 gi|282163627|ref|YP_003356012.1| - 0.051 13.4 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Reverse transcriptase thumb domain ArAE_1_C PF11728.8 gi|282163628|ref|YP_003356013.1| - 0.051 13.6 0.1 0.066 13.2 0.1 1.2 1 0 0 1 1 1 0 Putative aromatic acid exporter C-terminal domain MtrG PF04210.13 gi|282163628|ref|YP_003356013.1| - 0.1 12.4 0.5 1 9.2 0.1 2.2 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G VWA PF00092.28 gi|282163629|ref|YP_003356014.1| - 6e-08 33.1 0.0 8.4e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|282163629|ref|YP_003356014.1| - 2e-05 25.2 0.0 3.8e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|282163629|ref|YP_003356014.1| - 0.0092 15.4 0.0 0.018 14.4 0.0 1.5 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 gi|282163629|ref|YP_003356014.1| - 0.16 11.9 0.0 0.5 10.3 0.0 1.7 1 1 0 1 1 1 0 von Willebrand factor type A domain PulG PF11773.8 gi|282163630|ref|YP_003356015.1| - 0.081 12.8 1.3 0.11 12.4 1.3 1.2 1 0 0 1 1 1 0 Type II secretory pathway pseudopilin RmuC PF02646.16 gi|282163631|ref|YP_003356016.1| - 6.3e-100 334.1 1.7 6.3e-100 334.1 1.7 3.0 3 0 0 3 3 3 2 RmuC family DUF4407 PF14362.6 gi|282163631|ref|YP_003356016.1| - 0.00018 21.0 16.0 0.00018 21.0 16.0 2.6 2 1 1 3 3 3 1 Domain of unknown function (DUF4407) DUF5082 PF16888.5 gi|282163631|ref|YP_003356016.1| - 0.0043 17.3 13.9 0.0043 17.3 13.9 3.9 4 1 1 5 5 5 1 Domain of unknown function (DUF5082) DUF4064 PF13273.6 gi|282163631|ref|YP_003356016.1| - 0.087 13.1 0.3 0.23 11.7 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) SHE3 PF17078.5 gi|282163631|ref|YP_003356016.1| - 0.98 9.1 39.4 0.035 13.8 19.6 3.4 3 1 1 4 4 4 0 SWI5-dependent HO expression protein 3 DUF641 PF04859.12 gi|282163631|ref|YP_003356016.1| - 1.7 9.0 28.0 0.26 11.6 6.1 3.9 2 1 2 4 4 4 0 Plant protein of unknown function (DUF641) SlyX PF04102.12 gi|282163631|ref|YP_003356016.1| - 1.9 9.1 27.3 0.42 11.3 1.6 5.0 4 2 1 5 5 5 0 SlyX HemX PF04375.14 gi|282163631|ref|YP_003356016.1| - 3 7.0 30.4 13 4.9 28.3 2.8 2 1 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Spc7 PF08317.11 gi|282163631|ref|YP_003356016.1| - 5.3 5.8 38.8 1.4 7.8 15.7 2.8 2 1 1 3 3 3 0 Spc7 kinetochore protein UvrD-helicase PF00580.21 gi|282163632|ref|YP_003356017.1| - 2.5e-56 191.5 3.0 5.7e-56 190.3 3.0 1.6 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|282163632|ref|YP_003356017.1| - 3e-49 168.3 0.0 1e-47 163.3 0.0 2.4 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|282163632|ref|YP_003356017.1| - 7.9e-32 110.6 0.0 2e-30 106.1 0.0 2.7 2 1 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.7 gi|282163632|ref|YP_003356017.1| - 5.3e-26 92.1 2.0 1.8e-25 90.3 0.0 2.8 3 0 0 3 3 3 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.6 gi|282163632|ref|YP_003356017.1| - 4.8e-13 49.2 0.0 9.4e-09 35.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain UvrD_C_2 PF13538.6 gi|282163632|ref|YP_003356017.1| - 2.4e-11 43.3 0.7 0.0003 20.6 0.0 2.9 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|282163632|ref|YP_003356017.1| - 1e-05 25.4 2.4 7.5 6.2 0.3 4.6 4 1 1 5 5 5 2 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|282163632|ref|YP_003356017.1| - 0.00015 21.3 0.3 0.0092 15.5 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.6 gi|282163632|ref|YP_003356017.1| - 0.00049 20.4 0.1 1.6 9.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|282163632|ref|YP_003356017.1| - 0.0027 17.5 0.0 0.019 14.8 0.0 2.4 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|282163632|ref|YP_003356017.1| - 0.0034 17.4 0.2 0.016 15.2 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF3799 PF12684.7 gi|282163632|ref|YP_003356017.1| - 0.0045 16.8 0.0 0.012 15.4 0.0 1.7 1 0 0 1 1 1 1 PDDEXK-like domain of unknown function (DUF3799) DEAD PF00270.29 gi|282163632|ref|YP_003356017.1| - 0.0058 16.4 0.1 0.027 14.2 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase T2SSE PF00437.20 gi|282163632|ref|YP_003356017.1| - 0.0065 15.6 0.0 0.025 13.6 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF2075 PF09848.9 gi|282163632|ref|YP_003356017.1| - 0.025 13.9 0.2 3.2 6.9 0.0 2.9 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) N6_N4_Mtase PF01555.18 gi|282163635|ref|YP_003356020.1| - 1.6e-16 60.7 7.1 3.2e-11 43.4 0.0 2.6 3 0 0 3 3 3 2 DNA methylase MethyltransfD12 PF02086.15 gi|282163635|ref|YP_003356020.1| - 7.9e-05 22.4 2.4 0.0013 18.5 0.1 2.7 3 0 0 3 3 3 1 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.15 gi|282163635|ref|YP_003356020.1| - 0.00015 21.5 0.0 0.34 10.5 0.0 2.3 2 0 0 2 2 2 2 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|282163635|ref|YP_003356020.1| - 0.00064 19.5 0.0 0.0031 17.2 0.0 1.9 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|282163635|ref|YP_003356020.1| - 0.024 14.2 0.0 3.7 7.1 0.0 3.1 2 1 1 3 3 3 0 Methyltransferase small domain N6_N4_Mtase PF01555.18 gi|282163636|ref|YP_003356021.1| - 2.7e-14 53.4 6.3 6.9e-13 48.8 0.9 2.2 2 0 0 2 2 2 2 DNA methylase Cons_hypoth95 PF03602.15 gi|282163636|ref|YP_003356021.1| - 0.036 13.7 0.0 0.066 12.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|282163636|ref|YP_003356021.1| - 0.08 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein McrBC PF10117.9 gi|282163637|ref|YP_003356022.1| - 1e-31 110.3 0.1 1.2e-31 110.0 0.1 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component AAA_5 PF07728.14 gi|282163638|ref|YP_003356023.1| - 2e-13 50.5 0.0 1.3e-11 44.6 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|282163638|ref|YP_003356023.1| - 1.7e-09 38.2 0.0 6.2e-09 36.4 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|282163638|ref|YP_003356023.1| - 0.0002 21.7 0.0 0.0004 20.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|282163638|ref|YP_003356023.1| - 0.00021 21.6 0.0 0.00046 20.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|282163638|ref|YP_003356023.1| - 0.0013 19.1 0.0 0.0083 16.5 0.0 2.3 3 0 0 3 3 3 1 AAA ATPase domain AAA_33 PF13671.6 gi|282163638|ref|YP_003356023.1| - 0.0061 16.7 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|282163638|ref|YP_003356023.1| - 0.0077 16.2 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|282163638|ref|YP_003356023.1| - 0.0078 15.9 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|282163638|ref|YP_003356023.1| - 0.0082 16.5 0.0 0.033 14.6 0.0 2.1 1 0 0 1 1 1 1 RNA helicase IstB_IS21 PF01695.17 gi|282163638|ref|YP_003356023.1| - 0.0091 15.7 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein NACHT PF05729.12 gi|282163638|ref|YP_003356023.1| - 0.0095 15.9 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 1 NACHT domain PhoH PF02562.16 gi|282163638|ref|YP_003356023.1| - 0.013 15.0 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_7 PF12775.7 gi|282163638|ref|YP_003356023.1| - 0.016 14.7 0.0 0.032 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|282163638|ref|YP_003356023.1| - 0.019 14.6 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|282163638|ref|YP_003356023.1| - 0.023 14.4 0.0 0.13 12.0 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|282163638|ref|YP_003356023.1| - 0.037 14.6 0.0 0.091 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|282163638|ref|YP_003356023.1| - 0.043 13.6 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|282163638|ref|YP_003356023.1| - 0.044 13.8 0.0 0.79 9.8 0.0 2.4 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|282163638|ref|YP_003356023.1| - 0.048 13.4 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain ResIII PF04851.15 gi|282163638|ref|YP_003356023.1| - 0.18 11.8 0.0 1.8 8.5 0.0 2.2 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Pyr_redox_2 PF07992.14 gi|282163640|ref|YP_003356025.1| - 2.5e-51 174.7 0.1 3.4e-51 174.2 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|282163640|ref|YP_003356025.1| - 1e-21 77.2 0.7 2.3e-21 76.1 0.4 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|282163640|ref|YP_003356025.1| - 2.4e-14 53.6 0.5 9.8e-14 51.7 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|282163640|ref|YP_003356025.1| - 9.8e-13 48.0 0.0 1.5e-12 47.4 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|282163640|ref|YP_003356025.1| - 0.0026 16.9 3.8 0.17 10.9 0.7 2.8 2 1 1 3 3 3 2 FAD binding domain ApbA PF02558.16 gi|282163640|ref|YP_003356025.1| - 0.0036 17.0 0.0 0.0074 15.9 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|282163640|ref|YP_003356025.1| - 0.021 14.7 0.0 0.053 13.4 0.0 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|282163640|ref|YP_003356025.1| - 0.022 13.8 2.2 3.5 6.6 0.0 2.7 2 1 0 2 2 2 0 Glucose inhibited division protein A K_oxygenase PF13434.6 gi|282163640|ref|YP_003356025.1| - 0.023 13.8 0.0 5 6.2 0.0 2.3 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.14 gi|282163640|ref|YP_003356025.1| - 0.037 13.6 0.0 0.072 12.7 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|282163640|ref|YP_003356025.1| - 0.061 12.7 0.0 0.25 10.7 0.0 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|282163640|ref|YP_003356025.1| - 0.072 11.8 1.8 0.55 8.9 0.3 2.7 3 0 0 3 3 3 0 HI0933-like protein DAO PF01266.24 gi|282163640|ref|YP_003356025.1| - 0.077 12.6 3.1 11 5.5 0.1 3.3 3 0 0 3 3 3 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|282163640|ref|YP_003356025.1| - 0.14 12.4 0.4 16 5.8 0.0 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Inhibitor_I69 PF13734.6 gi|282163640|ref|YP_003356025.1| - 0.14 12.6 1.3 0.83 10.1 0.0 2.6 3 0 0 3 3 3 0 Spi protease inhibitor SIS PF01380.22 gi|282163642|ref|YP_003356027.1| - 5.6e-53 178.3 3.6 2.6e-31 108.2 1.1 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|282163642|ref|YP_003356027.1| - 6.4e-22 78.2 0.0 1.2e-21 77.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|282163642|ref|YP_003356027.1| - 2.9e-18 66.0 0.0 4.9e-18 65.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|282163642|ref|YP_003356027.1| - 4.8e-05 23.4 0.2 0.00045 20.2 0.1 2.4 2 0 0 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|282163642|ref|YP_003356027.1| - 7e-05 21.9 0.1 0.00013 20.9 0.1 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II CCM2_C PF16545.5 gi|282163642|ref|YP_003356027.1| - 0.064 13.8 0.2 0.18 12.3 0.2 1.7 1 0 0 1 1 1 0 Cerebral cavernous malformation protein, harmonin-homology PK_C PF02887.16 gi|282163642|ref|YP_003356027.1| - 0.069 13.4 0.7 0.32 11.2 0.1 2.5 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain MinC_N PF05209.13 gi|282163642|ref|YP_003356027.1| - 0.58 10.1 2.5 11 6.0 0.1 3.6 3 1 0 4 4 4 0 Septum formation inhibitor MinC, N-terminal domain Acetyltransf_3 PF13302.7 gi|282163643|ref|YP_003356028.1| - 2.3e-22 80.2 0.2 3e-22 79.8 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|282163643|ref|YP_003356028.1| - 2e-15 57.0 0.1 2.7e-15 56.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|282163643|ref|YP_003356028.1| - 2.1e-10 40.4 0.0 3.6e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|282163643|ref|YP_003356028.1| - 8.3e-06 26.0 0.0 1.1e-05 25.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|282163643|ref|YP_003356028.1| - 0.0006 19.7 0.0 0.001 19.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|282163643|ref|YP_003356028.1| - 0.004 17.5 0.0 0.0066 16.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Methyltransf_25 PF13649.6 gi|282163644|ref|YP_003356029.1| - 1.3e-16 61.0 0.0 2.1e-16 60.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282163644|ref|YP_003356029.1| - 1.5e-15 57.6 0.0 2.3e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163644|ref|YP_003356029.1| - 9.6e-14 51.5 0.0 1.8e-13 50.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282163644|ref|YP_003356029.1| - 1.6e-12 48.0 0.0 2.2e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282163644|ref|YP_003356029.1| - 4.7e-12 46.0 0.0 7e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|282163644|ref|YP_003356029.1| - 4.8e-09 35.8 0.0 5.7e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Ubie_methyltran PF01209.18 gi|282163644|ref|YP_003356029.1| - 1.7e-08 34.1 0.0 5.3e-08 32.5 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|282163644|ref|YP_003356029.1| - 0.00062 19.4 0.0 0.0008 19.1 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) CheR PF01739.18 gi|282163644|ref|YP_003356029.1| - 0.0017 17.8 0.0 0.0026 17.3 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain MTS PF05175.14 gi|282163644|ref|YP_003356029.1| - 0.012 15.2 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain CMAS PF02353.20 gi|282163644|ref|YP_003356029.1| - 0.093 12.0 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase NAS PF03059.16 gi|282163644|ref|YP_003356029.1| - 0.11 11.8 0.0 0.23 10.8 0.0 1.5 2 0 0 2 2 2 0 Nicotianamine synthase protein Rieske PF00355.26 gi|282163645|ref|YP_003356030.1| - 9.9e-16 57.5 0.0 1.2e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|282163645|ref|YP_003356030.1| - 2e-09 37.3 0.0 2.5e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Glutaredoxin PF00462.24 gi|282163646|ref|YP_003356031.1| - 1.9e-10 40.8 0.1 3.5e-10 39.9 0.1 1.4 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.6 gi|282163646|ref|YP_003356031.1| - 0.0021 18.4 0.0 0.0029 18.0 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF1462 PF07315.11 gi|282163646|ref|YP_003356031.1| - 0.037 14.3 0.1 0.043 14.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1462) ArsC PF03960.15 gi|282163646|ref|YP_003356031.1| - 0.12 12.4 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 ArsC family DUF3695 PF12494.8 gi|282163646|ref|YP_003356031.1| - 0.13 12.2 0.2 0.15 11.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3695) FeThRed_B PF02943.15 gi|282163647|ref|YP_003356032.1| - 1.3e-28 99.1 0.2 1.5e-28 98.9 0.2 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Rieske PF00355.26 gi|282163648|ref|YP_003356033.1| - 3e-12 46.3 0.0 4e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|282163648|ref|YP_003356033.1| - 0.0037 17.2 0.0 0.0054 16.6 0.0 1.3 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain PALP PF00291.25 gi|282163649|ref|YP_003356034.1| - 4.6e-69 233.1 0.3 5.2e-69 232.9 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Glyco_transf_21 PF13506.6 gi|282163649|ref|YP_003356034.1| - 0.074 12.5 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 zf-CSL PF05207.13 gi|282163649|ref|YP_003356034.1| - 1.2 8.9 3.6 1.5 8.6 0.1 2.3 1 1 1 2 2 2 0 CSL zinc finger PQQ_2 PF13360.6 gi|282163652|ref|YP_003356037.1| - 5.5e-18 65.4 3.6 3.8e-13 49.6 0.2 2.2 1 1 1 2 2 2 2 PQQ-like domain WD40 PF00400.32 gi|282163652|ref|YP_003356037.1| - 1.2e-12 48.1 8.5 0.032 15.1 0.0 6.9 6 1 1 7 7 7 4 WD domain, G-beta repeat PQQ_3 PF13570.6 gi|282163652|ref|YP_003356037.1| - 4e-12 46.2 7.7 0.017 15.6 0.0 7.6 8 0 0 8 8 8 3 PQQ-like domain PQQ PF01011.21 gi|282163652|ref|YP_003356037.1| - 5.7e-08 32.3 1.2 3.6 7.7 0.0 5.8 6 0 0 6 6 6 3 PQQ enzyme repeat ANAPC4_WD40 PF12894.7 gi|282163652|ref|YP_003356037.1| - 8.5e-08 32.4 0.0 0.16 12.3 0.0 4.0 2 2 3 5 5 5 3 Anaphase-promoting complex subunit 4 WD40 domain RAB3GAP2_N PF14655.6 gi|282163652|ref|YP_003356037.1| - 0.00063 19.1 0.0 0.28 10.4 0.0 2.3 1 1 0 2 2 2 2 Rab3 GTPase-activating protein regulatory subunit N-terminus zinc_ribbon_2 PF13240.6 gi|282163652|ref|YP_003356037.1| - 0.0051 16.5 1.5 0.0099 15.6 1.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain IKI3 PF04762.12 gi|282163652|ref|YP_003356037.1| - 0.016 13.2 0.0 0.022 12.8 0.0 1.2 1 0 0 1 1 1 0 IKI3 family HZS_alpha PF18582.1 gi|282163652|ref|YP_003356037.1| - 0.047 14.2 0.7 8.2 7.0 0.0 3.5 2 2 0 2 2 2 0 Hydrazine synthase alpha subunit middle domain DZR PF12773.7 gi|282163652|ref|YP_003356037.1| - 0.072 13.1 0.4 0.16 12.0 0.4 1.5 1 0 0 1 1 1 0 Double zinc ribbon Ge1_WD40 PF16529.5 gi|282163652|ref|YP_003356037.1| - 0.076 12.0 0.9 5.2 5.9 0.0 3.0 2 1 1 3 3 3 0 WD40 region of Ge1, enhancer of mRNA-decapping protein LGFP PF08310.11 gi|282163652|ref|YP_003356037.1| - 0.1 13.1 0.0 12 6.5 0.0 3.1 3 0 0 3 3 3 0 LGFP repeat dCache_1 PF02743.18 gi|282163652|ref|YP_003356037.1| - 0.11 12.2 1.7 13 5.4 0.1 3.4 1 1 4 5 5 5 0 Cache domain zf-ribbon_3 PF13248.6 gi|282163652|ref|YP_003356037.1| - 0.12 11.8 2.2 0.25 10.8 2.0 1.6 1 1 1 2 2 2 0 zinc-ribbon domain DSPc PF00782.20 gi|282163653|ref|YP_003356038.1| - 2.5e-08 33.8 0.0 2.9e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase3 PF13350.6 gi|282163653|ref|YP_003356038.1| - 6.3e-05 23.0 0.0 6.7e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Tyrosine phosphatase family Y_phosphatase PF00102.27 gi|282163653|ref|YP_003356038.1| - 0.00094 18.8 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase Y_phosphatase2 PF03162.13 gi|282163653|ref|YP_003356038.1| - 0.096 12.3 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Tyrosine phosphatase family ABC2_membrane_2 PF12679.7 gi|282163655|ref|YP_003356040.1| - 5.2e-46 157.2 18.8 1e-45 156.2 18.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|282163655|ref|YP_003356040.1| - 6.3e-10 38.7 27.5 2.2e-09 36.9 27.3 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|282163655|ref|YP_003356040.1| - 2.1e-08 33.8 14.4 2.1e-08 33.8 14.4 2.3 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|282163655|ref|YP_003356040.1| - 6.8e-06 26.1 16.2 6.8e-06 26.1 16.2 3.0 3 1 1 4 4 4 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|282163655|ref|YP_003356040.1| - 1.1e-05 25.1 20.6 1.1e-05 25.1 20.6 2.5 3 0 0 3 3 3 1 ABC-2 family transporter protein DUF1845 PF08900.11 gi|282163655|ref|YP_003356040.1| - 0.13 12.0 0.1 0.21 11.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1845) ABC_tran PF00005.27 gi|282163656|ref|YP_003356041.1| - 2.4e-27 96.1 0.0 4.7e-27 95.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163656|ref|YP_003356041.1| - 2.6e-12 47.2 0.2 4.3e-08 33.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|282163656|ref|YP_003356041.1| - 1.8e-11 44.6 0.1 3.6e-11 43.6 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SRP54 PF00448.22 gi|282163656|ref|YP_003356041.1| - 0.00078 19.1 0.1 0.0013 18.4 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA PF00004.29 gi|282163656|ref|YP_003356041.1| - 0.0025 18.2 0.8 0.047 14.1 0.2 2.8 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|282163656|ref|YP_003356041.1| - 0.0082 15.9 0.0 0.15 11.7 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|282163656|ref|YP_003356041.1| - 0.018 14.7 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|282163656|ref|YP_003356041.1| - 0.043 14.3 0.3 0.094 13.2 0.3 1.5 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|282163656|ref|YP_003356041.1| - 0.086 12.3 0.1 0.22 10.9 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_29 PF13555.6 gi|282163656|ref|YP_003356041.1| - 0.09 12.5 0.1 0.17 11.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Methyltransf_31 PF13847.6 gi|282163658|ref|YP_003356043.1| - 1.6e-10 41.0 0.0 3.7e-10 39.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282163658|ref|YP_003356043.1| - 1.8e-07 31.8 0.1 2.8e-07 31.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|282163658|ref|YP_003356043.1| - 1e-06 28.3 0.0 1.5e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|282163658|ref|YP_003356043.1| - 3.8e-06 26.8 0.1 5.1e-06 26.4 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|282163658|ref|YP_003356043.1| - 3.8e-06 27.4 0.0 5.8e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163658|ref|YP_003356043.1| - 0.0019 18.1 0.0 0.0024 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|282163658|ref|YP_003356043.1| - 0.0027 17.3 0.1 0.0044 16.6 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.10 gi|282163658|ref|YP_003356043.1| - 0.0029 17.2 0.1 0.004 16.7 0.1 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.6 gi|282163658|ref|YP_003356043.1| - 0.0052 16.8 0.0 0.0069 16.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|282163658|ref|YP_003356043.1| - 0.012 15.1 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_12 PF08242.12 gi|282163658|ref|YP_003356043.1| - 0.059 14.1 0.3 0.15 12.8 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain GCD14 PF08704.10 gi|282163658|ref|YP_003356043.1| - 0.2 11.3 0.0 0.25 11.0 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Fer4_20 PF14691.6 gi|282163659|ref|YP_003356044.1| - 1.1e-42 144.4 1.7 1.9e-42 143.6 1.7 1.4 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|282163659|ref|YP_003356044.1| - 4.9e-36 124.5 0.8 7.5e-36 123.9 0.8 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|282163659|ref|YP_003356044.1| - 2.6e-15 56.7 2.9 4.3e-08 33.6 0.2 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|282163659|ref|YP_003356044.1| - 6.2e-10 38.8 1.8 2.9e-05 23.5 0.1 3.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|282163659|ref|YP_003356044.1| - 1.7e-09 37.3 0.1 0.0007 19.0 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|282163659|ref|YP_003356044.1| - 6.5e-09 35.9 2.1 2.5e-08 34.0 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|282163659|ref|YP_003356044.1| - 4.2e-07 29.7 4.5 1.6e-05 24.5 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|282163659|ref|YP_003356044.1| - 1.7e-06 28.4 0.5 0.011 16.1 0.1 2.8 2 1 0 2 2 2 2 Putative NAD(P)-binding GIDA PF01134.22 gi|282163659|ref|YP_003356044.1| - 3.1e-06 26.5 3.1 0.00015 21.0 0.1 2.8 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|282163659|ref|YP_003356044.1| - 6.5e-06 25.5 1.5 6.2e-05 22.2 0.8 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|282163659|ref|YP_003356044.1| - 2.9e-05 23.5 0.2 0.00026 20.4 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|282163659|ref|YP_003356044.1| - 4.4e-05 22.9 0.1 0.059 12.7 0.0 2.3 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|282163659|ref|YP_003356044.1| - 4.6e-05 22.8 0.2 4.6e-05 22.8 0.2 1.8 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|282163659|ref|YP_003356044.1| - 5.6e-05 22.0 0.2 5.6e-05 22.0 0.2 2.2 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.24 gi|282163659|ref|YP_003356044.1| - 0.00038 20.1 1.9 0.0014 18.3 0.3 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|282163659|ref|YP_003356044.1| - 0.0018 17.7 1.6 0.0025 17.1 0.1 2.0 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase ELFV_dehydrog PF00208.21 gi|282163659|ref|YP_003356044.1| - 0.0035 17.1 0.0 0.88 9.2 0.0 2.3 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_9 PF13454.6 gi|282163659|ref|YP_003356044.1| - 0.0083 16.1 0.2 0.21 11.6 0.2 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding PALP PF00291.25 gi|282163659|ref|YP_003356044.1| - 0.012 15.1 0.0 2.6 7.4 0.0 2.3 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme Oxidored_nitro PF00148.19 gi|282163659|ref|YP_003356044.1| - 0.013 14.2 0.1 0.047 12.4 0.0 1.8 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase K_oxygenase PF13434.6 gi|282163659|ref|YP_003356044.1| - 0.02 14.1 0.0 4.5 6.3 0.0 2.6 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) XdhC_C PF13478.6 gi|282163659|ref|YP_003356044.1| - 0.028 14.9 0.3 1.7 9.2 0.0 2.8 3 0 0 3 3 2 0 XdhC Rossmann domain Lycopene_cycl PF05834.12 gi|282163659|ref|YP_003356044.1| - 0.03 13.4 0.2 0.056 12.5 0.2 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|282163659|ref|YP_003356044.1| - 0.034 14.0 0.2 0.46 10.3 0.1 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SIS_2 PF13580.6 gi|282163659|ref|YP_003356044.1| - 0.052 13.6 0.0 5 7.1 0.0 2.3 2 0 0 2 2 2 0 SIS domain YjeF_N PF03853.15 gi|282163659|ref|YP_003356044.1| - 0.056 13.3 0.1 5.6 6.8 0.0 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus PrpR_N PF06506.11 gi|282163659|ref|YP_003356044.1| - 0.066 12.8 0.9 14 5.2 0.0 3.4 3 0 0 3 3 3 0 Propionate catabolism activator F420_oxidored PF03807.17 gi|282163659|ref|YP_003356044.1| - 0.076 13.6 0.2 1.4 9.5 0.0 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent FMO-like PF00743.19 gi|282163659|ref|YP_003356044.1| - 0.15 10.4 0.0 1.5 7.2 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like AdoHcyase_NAD PF00670.21 gi|282163659|ref|YP_003356044.1| - 0.22 11.6 0.8 9.1 6.3 0.1 2.4 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Trp_halogenase PF04820.14 gi|282163659|ref|YP_003356044.1| - 0.64 8.8 2.6 0.43 9.4 0.2 1.7 2 0 0 2 2 2 0 Tryptophan halogenase DHODB_Fe-S_bind PF10418.9 gi|282163660|ref|YP_003356045.1| - 6.2e-13 48.3 4.2 1.1e-12 47.5 4.2 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|282163660|ref|YP_003356045.1| - 0.0021 18.4 0.0 0.0048 17.2 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_1 PF00175.21 gi|282163660|ref|YP_003356045.1| - 0.0069 17.0 0.0 0.016 15.9 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.12 gi|282163660|ref|YP_003356045.1| - 0.024 14.8 0.1 0.042 14.0 0.1 1.4 1 0 0 1 1 1 0 Ferric reductase NAD binding domain Fer2_3 PF13085.6 gi|282163660|ref|YP_003356045.1| - 0.031 14.3 0.6 0.06 13.4 0.6 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain ABC_tran PF00005.27 gi|282163661|ref|YP_003356046.1| - 7.7e-24 84.8 0.0 1.3e-23 84.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163661|ref|YP_003356046.1| - 1e-11 45.3 0.1 1.2e-07 31.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|282163661|ref|YP_003356046.1| - 1.4e-06 28.9 0.2 2.5e-06 28.1 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) BCA_ABC_TP_C PF12399.8 gi|282163661|ref|YP_003356046.1| - 0.00049 20.0 0.0 0.0058 16.5 0.0 2.3 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter SRP54 PF00448.22 gi|282163661|ref|YP_003356046.1| - 0.012 15.3 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|282163661|ref|YP_003356046.1| - 0.018 14.8 0.0 2.7 7.6 0.0 2.2 1 1 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|282163661|ref|YP_003356046.1| - 0.052 14.0 0.3 0.11 13.0 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|282163661|ref|YP_003356046.1| - 0.11 12.2 0.1 0.24 11.2 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|282163661|ref|YP_003356046.1| - 0.19 11.4 0.0 0.36 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 gi|282163662|ref|YP_003356047.1| - 1e-54 185.8 11.0 1.3e-54 185.5 11.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|282163662|ref|YP_003356047.1| - 1.2e-07 31.8 20.3 1.3e-07 31.8 13.0 3.1 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|282163662|ref|YP_003356047.1| - 2.4e-07 30.2 15.6 2.4e-07 30.2 15.6 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|282163662|ref|YP_003356047.1| - 2.6e-07 30.4 14.1 2.6e-07 30.4 14.1 2.8 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|282163662|ref|YP_003356047.1| - 0.00013 21.5 15.8 0.00013 21.5 15.8 2.8 3 0 0 3 3 3 1 ABC-2 type transporter GspL_C PF12693.7 gi|282163662|ref|YP_003356047.1| - 0.042 13.7 0.2 0.1 12.5 0.2 1.6 1 0 0 1 1 1 0 GspL periplasmic domain MerC PF03203.14 gi|282163662|ref|YP_003356047.1| - 0.044 14.2 0.9 0.044 14.2 0.9 2.7 4 0 0 4 4 4 0 MerC mercury resistance protein DUF5510 PF17629.2 gi|282163662|ref|YP_003356047.1| - 0.27 11.2 0.1 0.27 11.2 0.1 2.8 3 0 0 3 3 2 0 Family of unknown function (DUF5510) DUF4079 PF13301.6 gi|282163662|ref|YP_003356047.1| - 1 9.5 4.2 2.6 8.2 2.9 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF4079) DivIC PF04977.15 gi|282163662|ref|YP_003356047.1| - 1.4 8.7 5.0 6.2 6.7 3.3 2.7 2 1 0 2 2 2 0 Septum formation initiator tRNA_anti-like PF12869.7 gi|282163662|ref|YP_003356047.1| - 1.5 8.4 3.9 0.51 9.9 0.2 2.1 2 0 0 2 2 2 0 tRNA_anti-like Phage_holin_3_6 PF07332.11 gi|282163662|ref|YP_003356047.1| - 3.7 7.6 0.0 3.7 7.6 0.0 3.7 3 1 1 4 4 3 0 Putative Actinobacterial Holin-X, holin superfamily III NPCBM_assoc PF10633.9 gi|282163663|ref|YP_003356048.1| - 8.7e-21 74.0 5.0 1.4e-17 63.7 0.5 4.4 4 0 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.8 gi|282163663|ref|YP_003356048.1| - 2.2e-08 34.3 2.3 0.13 12.5 0.0 3.6 2 1 0 3 3 3 3 IG-like fold at C-terminal of FixG, putative oxidoreductase CARDB PF07705.11 gi|282163663|ref|YP_003356048.1| - 0.00099 19.3 1.9 0.00099 19.3 1.9 3.5 4 1 0 4 4 4 1 CARDB Alpha_adaptinC2 PF02883.20 gi|282163663|ref|YP_003356048.1| - 0.0032 17.7 1.9 0.016 15.5 0.2 2.9 3 1 0 3 3 3 1 Adaptin C-terminal domain fn3_5 PF06280.12 gi|282163663|ref|YP_003356048.1| - 0.0046 17.6 10.4 2.4 8.9 0.1 5.3 4 2 0 4 4 4 1 Fn3-like domain DUF4832 PF16116.5 gi|282163663|ref|YP_003356048.1| - 0.0056 16.6 0.2 0.017 15.0 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4832) DUF756 PF05506.12 gi|282163663|ref|YP_003356048.1| - 0.007 17.3 0.9 0.49 11.3 0.1 2.9 2 1 0 2 2 2 1 Domain of unknown function (DUF756) MG2 PF01835.19 gi|282163663|ref|YP_003356048.1| - 0.035 14.6 0.6 0.92 10.0 0.1 3.3 3 1 1 4 4 4 0 MG2 domain fn3_6 PF17766.1 gi|282163663|ref|YP_003356048.1| - 0.16 12.2 4.6 2.1 8.6 0.1 4.0 2 1 3 5 5 5 0 Fibronectin type-III domain DUF11 PF01345.18 gi|282163663|ref|YP_003356048.1| - 0.17 12.2 8.1 2.3 8.5 1.9 4.3 3 1 2 5 5 5 0 Domain of unknown function DUF11 CorA PF01544.18 gi|282163664|ref|YP_003356049.1| - 3.9e-45 154.4 5.6 4.6e-45 154.2 5.6 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein RepB PF07506.11 gi|282163664|ref|YP_003356049.1| - 0.06 13.4 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 RepB plasmid partitioning protein Trypsin_2 PF13365.6 gi|282163665|ref|YP_003356050.1| - 5e-33 115.1 0.7 7.5e-33 114.5 0.7 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|282163665|ref|YP_003356050.1| - 6e-14 52.4 0.0 9.7e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 gi|282163665|ref|YP_003356050.1| - 8.2e-14 51.7 0.0 1.8e-13 50.6 0.0 1.6 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|282163665|ref|YP_003356050.1| - 4.9e-10 39.1 0.4 5.1e-09 35.8 0.0 2.4 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|282163665|ref|YP_003356050.1| - 2.7e-05 24.4 0.1 0.00011 22.5 0.0 2.0 2 0 0 2 2 2 1 PDZ domain Peptidase_S46 PF10459.9 gi|282163665|ref|YP_003356050.1| - 5.5e-05 22.0 0.4 0.13 10.9 0.4 2.1 2 0 0 2 2 2 2 Peptidase S46 GRASP55_65 PF04495.14 gi|282163665|ref|YP_003356050.1| - 0.00058 20.2 0.0 0.0013 19.1 0.0 1.5 1 0 0 1 1 1 1 GRASP55/65 PDZ-like domain Peptidase_S7 PF00949.21 gi|282163665|ref|YP_003356050.1| - 0.0014 18.4 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase S7, Flavivirus NS3 serine protease Tricorn_PDZ PF14685.6 gi|282163665|ref|YP_003356050.1| - 0.096 12.7 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Tricorn protease PDZ domain Peptidase_S32 PF05579.13 gi|282163665|ref|YP_003356050.1| - 0.18 11.0 0.9 4.1 6.5 0.1 2.3 1 1 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 TFIIA_gamma_N PF02268.16 gi|282163665|ref|YP_003356050.1| - 0.2 11.7 0.1 0.52 10.4 0.1 1.6 1 0 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit, helical domain Peptidase_M48 PF01435.18 gi|282163666|ref|YP_003356051.1| - 2.8e-40 138.2 0.0 4e-40 137.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|282163666|ref|YP_003356051.1| - 5.5e-09 35.6 0.2 8.6e-09 35.0 0.2 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 GCS PF03074.16 gi|282163666|ref|YP_003356051.1| - 0.032 13.6 0.0 0.044 13.1 0.0 1.1 1 0 0 1 1 1 0 Glutamate-cysteine ligase FWWh PF14922.6 gi|282163666|ref|YP_003356051.1| - 0.09 12.7 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function SprT-like PF10263.9 gi|282163666|ref|YP_003356051.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 SprT-like family BSP PF04450.12 gi|282163666|ref|YP_003356051.1| - 0.13 12.1 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Peptidase of plants and bacteria DUF4157 PF13699.6 gi|282163666|ref|YP_003356051.1| - 0.18 12.0 0.0 0.37 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) DUF2070 PF09843.9 gi|282163666|ref|YP_003356051.1| - 0.62 8.3 7.4 0.062 11.6 0.8 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) PrgI PF12666.7 gi|282163666|ref|YP_003356051.1| - 8.9 7.1 8.9 44 4.9 0.1 2.4 2 0 0 2 2 2 0 PrgI family protein PEPCK_N PF17297.2 gi|282163667|ref|YP_003356052.1| - 0.021 14.4 0.0 0.59 9.7 0.0 2.1 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxykinase N-terminal domain Peptidase_M24 PF00557.24 gi|282163668|ref|YP_003356053.1| - 5.3e-37 127.6 0.0 5.6e-37 127.5 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Ectoine_synth PF06339.12 gi|282163668|ref|YP_003356053.1| - 0.047 13.9 0.0 6.2 7.0 0.0 2.2 1 1 1 2 2 2 0 Ectoine synthase ApbE PF02424.15 gi|282163668|ref|YP_003356053.1| - 0.081 12.4 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 ApbE family Nitroreductase PF00881.24 gi|282163669|ref|YP_003356054.1| - 4.1e-33 114.8 0.0 4.7e-33 114.6 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|282163669|ref|YP_003356054.1| - 5.4e-06 26.1 0.0 0.0057 16.3 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase Sua5_yciO_yrdC PF01300.18 gi|282163670|ref|YP_003356055.1| - 3.2e-47 160.4 0.0 3.7e-47 160.1 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination DUF356 PF04009.12 gi|282163671|ref|YP_003356056.1| - 8.6e-40 135.3 0.2 9.8e-40 135.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) AAA PF00004.29 gi|282163672|ref|YP_003356057.1| - 1.3e-44 151.8 0.0 3.1e-44 150.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|282163672|ref|YP_003356057.1| - 9.9e-13 47.7 0.1 2e-12 46.7 0.1 1.5 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|282163672|ref|YP_003356057.1| - 8.9e-11 41.6 0.0 1.7e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_5 PF07728.14 gi|282163672|ref|YP_003356057.1| - 3.2e-08 33.7 0.1 2.3e-07 30.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|282163672|ref|YP_003356057.1| - 2.2e-07 31.4 0.4 0.00017 22.0 0.0 3.1 2 1 0 3 3 3 1 AAA ATPase domain AAA_2 PF07724.14 gi|282163672|ref|YP_003356057.1| - 1.1e-06 28.9 0.0 3.1e-06 27.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|282163672|ref|YP_003356057.1| - 1.2e-05 25.2 0.0 3.8e-05 23.5 0.0 1.8 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain Prot_ATP_OB_N PF17758.1 gi|282163672|ref|YP_003356057.1| - 5.3e-05 22.8 0.0 0.00014 21.5 0.0 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_22 PF13401.6 gi|282163672|ref|YP_003356057.1| - 9.1e-05 22.8 0.3 0.009 16.3 0.1 2.4 1 1 1 2 2 2 1 AAA domain DUF815 PF05673.13 gi|282163672|ref|YP_003356057.1| - 9.2e-05 21.7 0.0 0.00019 20.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|282163672|ref|YP_003356057.1| - 0.0018 18.3 0.0 0.0049 16.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|282163672|ref|YP_003356057.1| - 0.002 17.9 0.0 0.0052 16.5 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|282163672|ref|YP_003356057.1| - 0.0024 17.1 0.0 0.0048 16.1 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_3 PF07726.11 gi|282163672|ref|YP_003356057.1| - 0.0039 17.1 0.0 0.014 15.3 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Filament PF00038.21 gi|282163672|ref|YP_003356057.1| - 0.0049 16.5 3.1 0.0097 15.5 3.1 1.4 1 0 0 1 1 1 1 Intermediate filament protein RNA_helicase PF00910.22 gi|282163672|ref|YP_003356057.1| - 0.0062 16.9 0.0 0.042 14.3 0.0 2.4 3 0 0 3 3 2 1 RNA helicase AAA_33 PF13671.6 gi|282163672|ref|YP_003356057.1| - 0.0085 16.3 0.0 0.03 14.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|282163672|ref|YP_003356057.1| - 0.009 15.8 0.1 0.024 14.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|282163672|ref|YP_003356057.1| - 0.01 15.5 0.1 0.11 12.2 0.1 2.5 1 1 0 1 1 1 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|282163672|ref|YP_003356057.1| - 0.011 15.1 1.8 0.019 14.4 0.1 2.2 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI Parvo_NS1 PF01057.17 gi|282163672|ref|YP_003356057.1| - 0.016 14.3 0.1 0.058 12.5 0.0 1.8 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_18 PF13238.6 gi|282163672|ref|YP_003356057.1| - 0.016 15.7 1.1 0.037 14.6 0.0 2.2 2 1 0 2 2 1 0 AAA domain AAA_28 PF13521.6 gi|282163672|ref|YP_003356057.1| - 0.026 14.8 0.6 0.047 13.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_7 PF12775.7 gi|282163672|ref|YP_003356057.1| - 0.026 14.0 0.0 0.063 12.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|282163672|ref|YP_003356057.1| - 0.028 14.3 0.1 0.1 12.5 0.0 2.1 2 0 0 2 2 1 0 NTPase AAA_30 PF13604.6 gi|282163672|ref|YP_003356057.1| - 0.029 14.1 0.6 0.078 12.7 0.1 2.1 2 1 0 2 2 1 0 AAA domain Zeta_toxin PF06414.12 gi|282163672|ref|YP_003356057.1| - 0.041 13.1 0.0 0.086 12.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Sigma54_activ_2 PF14532.6 gi|282163672|ref|YP_003356057.1| - 0.042 14.0 0.0 0.11 12.6 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain ATPase PF06745.13 gi|282163672|ref|YP_003356057.1| - 0.054 12.8 3.8 0.09 12.1 0.0 2.5 2 1 1 3 3 3 0 KaiC PhoH PF02562.16 gi|282163672|ref|YP_003356057.1| - 0.061 12.8 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_17 PF13207.6 gi|282163672|ref|YP_003356057.1| - 0.074 13.5 0.1 1.5 9.2 0.1 2.7 2 1 0 2 2 2 0 AAA domain KASH_CCD PF14662.6 gi|282163672|ref|YP_003356057.1| - 0.075 12.9 4.8 0.037 13.9 2.1 1.9 2 0 0 2 2 1 0 Coiled-coil region of CCDC155 or KASH AAA_25 PF13481.6 gi|282163672|ref|YP_003356057.1| - 0.076 12.6 0.4 0.25 10.9 0.1 2.0 2 1 0 2 2 2 0 AAA domain PPV_E1_C PF00519.17 gi|282163672|ref|YP_003356057.1| - 0.078 11.8 0.1 5.6 5.7 0.0 2.1 2 0 0 2 2 2 0 Papillomavirus helicase TsaE PF02367.17 gi|282163672|ref|YP_003356057.1| - 0.079 13.0 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 gi|282163672|ref|YP_003356057.1| - 0.1 12.5 2.5 0.85 9.5 0.1 2.8 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_11 PF13086.6 gi|282163672|ref|YP_003356057.1| - 0.11 12.3 1.8 0.72 9.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|282163672|ref|YP_003356057.1| - 0.18 11.7 0.2 0.54 10.2 0.1 1.8 2 0 0 2 2 2 0 NACHT domain Mto2_bdg PF12808.7 gi|282163672|ref|YP_003356057.1| - 2.6 8.4 7.9 6 7.3 7.9 1.6 1 0 0 1 1 1 0 Micro-tubular organiser Mto1 C-term Mto2-binding region CENP-H PF05837.12 gi|282163672|ref|YP_003356057.1| - 3.9 7.9 6.1 1.5 9.2 2.4 2.3 3 0 0 3 3 1 0 Centromere protein H (CENP-H) ZapB PF06005.12 gi|282163672|ref|YP_003356057.1| - 6.3 7.3 11.7 2.6 8.5 7.1 2.7 3 0 0 3 3 2 0 Cell division protein ZapB HTH_3 PF01381.22 gi|282163673|ref|YP_003356058.1| - 3.9e-08 33.2 1.2 5.7e-08 32.7 1.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix Spc29 PF17082.5 gi|282163673|ref|YP_003356058.1| - 0.0044 16.9 0.4 0.0055 16.6 0.4 1.1 1 0 0 1 1 1 1 Spindle Pole Component 29 HTH_31 PF13560.6 gi|282163673|ref|YP_003356058.1| - 0.017 15.4 0.0 0.031 14.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.7 gi|282163673|ref|YP_003356058.1| - 0.03 14.4 0.4 0.049 13.7 0.4 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain CDP-OH_P_transf PF01066.21 gi|282163674|ref|YP_003356059.1| - 3.1e-14 53.5 1.8 3.1e-14 53.5 1.8 2.1 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase HXXEE PF13787.6 gi|282163674|ref|YP_003356059.1| - 2 9.3 10.1 0.21 12.4 0.9 2.4 2 1 0 2 2 2 0 Protein of unknown function with HXXEE motif AAA_18 PF13238.6 gi|282163675|ref|YP_003356060.1| - 8.6e-23 81.3 0.0 1.2e-22 80.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|282163675|ref|YP_003356060.1| - 1.6e-05 25.4 0.2 0.014 15.8 0.1 2.7 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|282163675|ref|YP_003356060.1| - 8.4e-05 22.8 0.2 0.024 14.8 0.2 2.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|282163675|ref|YP_003356060.1| - 0.00034 20.9 0.1 0.0034 17.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain dNK PF01712.19 gi|282163675|ref|YP_003356060.1| - 0.0017 18.2 0.1 0.93 9.3 0.0 2.2 1 1 1 2 2 2 2 Deoxynucleoside kinase ADK PF00406.22 gi|282163675|ref|YP_003356060.1| - 0.012 15.7 0.1 0.5 10.5 0.0 2.2 1 1 1 2 2 2 0 Adenylate kinase AAA PF00004.29 gi|282163675|ref|YP_003356060.1| - 0.021 15.2 0.0 0.037 14.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|282163675|ref|YP_003356060.1| - 0.024 13.7 0.7 0.047 12.7 0.7 1.8 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CoaE PF01121.20 gi|282163675|ref|YP_003356060.1| - 0.027 14.1 0.2 0.17 11.5 0.1 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA_5 PF07728.14 gi|282163675|ref|YP_003356060.1| - 0.027 14.4 0.4 0.23 11.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|282163675|ref|YP_003356060.1| - 0.031 14.2 0.1 0.068 13.1 0.1 1.6 1 0 0 1 1 1 0 NTPase APS_kinase PF01583.20 gi|282163675|ref|YP_003356060.1| - 0.05 13.5 0.1 0.09 12.7 0.1 1.7 1 1 0 1 1 1 0 Adenylylsulphate kinase AAA_29 PF13555.6 gi|282163675|ref|YP_003356060.1| - 0.079 12.7 0.1 0.14 11.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|282163675|ref|YP_003356060.1| - 0.084 13.2 0.1 0.13 12.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|282163675|ref|YP_003356060.1| - 0.086 12.6 0.2 0.29 10.9 0.0 1.9 3 0 0 3 3 3 0 AAA domain SKI PF01202.22 gi|282163675|ref|YP_003356060.1| - 0.091 12.9 0.5 1.1 9.3 0.5 2.0 1 1 0 1 1 1 0 Shikimate kinase AAA_16 PF13191.6 gi|282163675|ref|YP_003356060.1| - 0.11 12.9 0.3 0.15 12.4 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 gi|282163675|ref|YP_003356060.1| - 0.15 11.4 1.5 2.4 7.4 0.3 2.2 2 0 0 2 2 2 0 KaiC ABC_tran PF00005.27 gi|282163675|ref|YP_003356060.1| - 0.19 12.2 0.2 0.23 12.0 0.2 1.6 1 1 0 1 1 1 0 ABC transporter AAA_30 PF13604.6 gi|282163675|ref|YP_003356060.1| - 0.26 11.0 1.2 0.78 9.4 0.3 2.1 2 1 1 3 3 3 0 AAA domain Aminotran_1_2 PF00155.21 gi|282163676|ref|YP_003356061.1| - 1.3e-60 205.5 0.0 1.5e-60 205.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|282163676|ref|YP_003356061.1| - 6.5e-08 31.5 0.0 1.5e-07 30.3 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|282163676|ref|YP_003356061.1| - 2.8e-07 29.8 0.0 6.7e-07 28.6 0.0 1.6 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|282163676|ref|YP_003356061.1| - 5.9e-07 29.1 0.0 8.3e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.13 gi|282163676|ref|YP_003356061.1| - 8.2e-05 21.6 0.0 0.00011 21.2 0.0 1.2 1 0 0 1 1 1 1 Allinase DmpG_comm PF07836.11 gi|282163676|ref|YP_003356061.1| - 0.081 12.5 0.0 6.6 6.4 0.0 2.8 3 0 0 3 3 3 0 DmpG-like communication domain AMP-binding PF00501.28 gi|282163677|ref|YP_003356062.1| - 0.0017 17.0 0.0 0.0032 16.1 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme zinc_ribbon_2 PF13240.6 gi|282163678|ref|YP_003356063.1| - 0.002 17.8 2.3 0.0024 17.5 1.4 1.7 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|282163678|ref|YP_003356063.1| - 0.047 13.7 6.3 0.064 13.3 6.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|282163678|ref|YP_003356063.1| - 1.9 8.6 9.3 15 5.8 9.4 2.0 1 1 1 2 2 2 0 Zinc ribbon domain Alba PF01918.21 gi|282163679|ref|YP_003356064.1| - 3.7e-21 74.7 0.5 5.7e-21 74.1 0.5 1.3 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|282163679|ref|YP_003356064.1| - 0.0064 16.5 0.1 0.0069 16.4 0.1 1.4 1 0 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P Lactamase_B PF00753.27 gi|282163681|ref|YP_003356066.1| - 6.1e-23 81.9 0.0 7.5e-23 81.6 0.0 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|282163681|ref|YP_003356066.1| - 0.00051 19.6 0.0 0.00069 19.2 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|282163681|ref|YP_003356066.1| - 0.0061 16.0 0.0 0.009 15.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain PDEase_II PF02112.15 gi|282163681|ref|YP_003356066.1| - 0.18 10.9 0.2 0.27 10.3 0.2 1.1 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II NikR_C PF08753.11 gi|282163681|ref|YP_003356066.1| - 0.31 11.2 1.7 14 6.0 1.1 3.1 2 1 1 3 3 3 0 NikR C terminal nickel binding domain ABC_tran PF00005.27 gi|282163682|ref|YP_003356067.1| - 1.5e-18 67.6 0.0 4.8e-18 66.0 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163682|ref|YP_003356067.1| - 3.4e-06 27.1 5.1 0.027 14.3 0.5 3.5 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|282163682|ref|YP_003356067.1| - 0.00063 20.3 0.1 0.0011 19.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|282163682|ref|YP_003356067.1| - 0.001 18.7 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Wzt_C PF14524.6 gi|282163682|ref|YP_003356067.1| - 0.009 16.1 0.1 0.016 15.2 0.1 1.3 1 0 0 1 1 1 1 Wzt C-terminal domain AAA_16 PF13191.6 gi|282163682|ref|YP_003356067.1| - 0.021 15.2 0.0 0.035 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain DUF4625 PF15418.6 gi|282163682|ref|YP_003356067.1| - 0.085 13.1 0.3 0.15 12.3 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) RsgA_GTPase PF03193.16 gi|282163682|ref|YP_003356067.1| - 0.099 12.5 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase DUF223 PF02721.14 gi|282163682|ref|YP_003356067.1| - 0.11 12.7 0.0 0.32 11.3 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function DUF223 AAA_15 PF13175.6 gi|282163682|ref|YP_003356067.1| - 0.15 11.7 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|282163682|ref|YP_003356067.1| - 0.23 10.9 0.1 0.63 9.4 0.1 1.7 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane PF01061.24 gi|282163683|ref|YP_003356068.1| - 6.4e-10 38.8 30.6 6.4e-10 38.8 30.6 1.5 2 0 0 2 2 2 1 ABC-2 type transporter CbiX PF01903.17 gi|282163684|ref|YP_003356069.1| - 6.5e-08 32.9 0.0 0.00074 19.8 0.0 2.5 2 0 0 2 2 2 2 CbiX FA_desaturase PF00487.24 gi|282163685|ref|YP_003356070.1| - 0.52 10.1 5.2 0.54 10.0 5.2 1.0 1 0 0 1 1 1 0 Fatty acid desaturase DUF2207 PF09972.9 gi|282163685|ref|YP_003356070.1| - 1.7 7.3 5.1 1.8 7.2 5.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PKD PF00801.20 gi|282163687|ref|YP_003356072.1| - 1.1e-18 66.8 7.6 5.6e-10 38.9 0.5 2.5 2 0 0 2 2 2 2 PKD domain CBM_6 PF03422.15 gi|282163687|ref|YP_003356072.1| - 1.3 9.3 4.0 2.5 8.4 0.4 2.5 2 1 1 3 3 3 0 Carbohydrate binding module (family 6) DUF4366 PF14283.6 gi|282163687|ref|YP_003356072.1| - 2.2 8.3 0.0 2.2 8.3 0.0 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4366) UBA_6 PF18039.1 gi|282163688|ref|YP_003356073.1| - 0.024 14.6 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain tRNA_anti-codon PF01336.25 gi|282163689|ref|YP_003356074.1| - 0.00085 19.3 0.0 0.047 13.7 0.0 3.0 2 1 0 2 2 2 1 OB-fold nucleic acid binding domain DUF2207 PF09972.9 gi|282163690|ref|YP_003356075.1| - 0.012 14.4 0.5 0.013 14.3 0.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3375 PF11855.8 gi|282163690|ref|YP_003356075.1| - 0.52 9.2 3.5 0.63 8.9 3.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) Tho2 PF11262.8 gi|282163690|ref|YP_003356075.1| - 1.6 7.9 6.5 3.2 6.9 6.5 1.6 1 1 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 DUF294 PF03445.13 gi|282163691|ref|YP_003356076.1| - 2.6e-28 98.6 0.0 4.7e-28 97.7 0.0 1.4 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DUF294_C PF10335.9 gi|282163691|ref|YP_003356076.1| - 6.6e-25 87.6 0.0 9e-24 83.9 0.0 2.3 2 0 0 2 2 2 1 Putative nucleotidyltransferase substrate binding domain AP_endonuc_2 PF01261.24 gi|282163691|ref|YP_003356076.1| - 6.4e-16 58.4 0.0 1e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel GlnE PF03710.15 gi|282163691|ref|YP_003356076.1| - 0.0091 15.4 0.0 0.046 13.1 0.0 1.9 2 0 0 2 2 2 1 Glutamate-ammonia ligase adenylyltransferase HMGL-like PF00682.19 gi|282163691|ref|YP_003356076.1| - 0.026 14.1 0.0 0.68 9.4 0.0 2.6 1 1 0 1 1 1 0 HMGL-like DUF3143 PF11341.8 gi|282163691|ref|YP_003356076.1| - 0.088 13.2 0.1 16 5.9 0.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3143) NTP_transf_2 PF01909.23 gi|282163691|ref|YP_003356076.1| - 0.11 12.8 0.0 0.26 11.6 0.0 1.6 1 0 0 1 1 1 0 Nucleotidyltransferase domain DUF3040 PF11239.8 gi|282163692|ref|YP_003356077.1| - 2.9 8.2 5.3 4.5 7.6 5.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) SLATT_5 PF18160.1 gi|282163692|ref|YP_003356077.1| - 3.4 6.9 5.8 3.8 6.8 5.8 1.1 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 DUF202 PF02656.15 gi|282163692|ref|YP_003356077.1| - 7.8 7.0 8.4 91 3.6 8.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Ig_mannosidase PF17753.1 gi|282163693|ref|YP_003356078.1| - 0.073 12.8 0.1 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 Ig-fold domain PmbA_TldD PF01523.16 gi|282163694|ref|YP_003356079.1| - 2.6e-51 175.1 1.2 3.4e-51 174.7 1.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF2974 PF11187.8 gi|282163694|ref|YP_003356079.1| - 0.18 11.3 0.1 0.3 10.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) PmbA_TldD PF01523.16 gi|282163695|ref|YP_003356080.1| - 4.2e-50 171.2 0.3 6.4e-50 170.5 0.2 1.3 2 0 0 2 2 2 1 Putative modulator of DNA gyrase Spore_coat_CotO PF14153.6 gi|282163695|ref|YP_003356080.1| - 0.077 12.9 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Spore coat protein CotO WHIM1 PF15612.6 gi|282163695|ref|YP_003356080.1| - 0.12 11.9 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 WSTF, HB1, Itc1p, MBD9 motif 1 VWA_2 PF13519.6 gi|282163696|ref|YP_003356081.1| - 0.00084 20.0 0.0 0.0018 18.9 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|282163696|ref|YP_003356081.1| - 0.0047 17.2 0.0 0.012 15.9 0.0 1.7 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|282163696|ref|YP_003356081.1| - 0.0049 16.3 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 2 VWA domain containing CoxE-like protein AAA_5 PF07728.14 gi|282163697|ref|YP_003356082.1| - 9.7e-21 74.2 0.0 3.4e-20 72.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|282163697|ref|YP_003356082.1| - 9e-07 28.8 0.0 5.9e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|282163697|ref|YP_003356082.1| - 8.6e-06 26.2 0.0 3.1e-05 24.4 0.0 2.2 2 1 1 3 3 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|282163697|ref|YP_003356082.1| - 2.9e-05 23.6 0.0 0.0017 17.8 0.0 2.4 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|282163697|ref|YP_003356082.1| - 0.0015 18.9 0.1 0.01 16.2 0.0 2.6 3 1 0 3 3 2 1 RNA helicase AAA_7 PF12775.7 gi|282163697|ref|YP_003356082.1| - 0.004 16.7 0.0 0.0098 15.4 0.0 1.6 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_18 PF13238.6 gi|282163697|ref|YP_003356082.1| - 0.0043 17.6 0.0 0.015 15.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|282163697|ref|YP_003356082.1| - 0.0061 16.9 0.0 0.12 12.8 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|282163697|ref|YP_003356082.1| - 0.011 16.1 0.0 0.32 11.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|282163697|ref|YP_003356082.1| - 0.015 14.5 0.0 0.025 13.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain CbbQ_C PF08406.10 gi|282163697|ref|YP_003356082.1| - 0.016 15.4 0.0 0.032 14.5 0.0 1.5 1 0 0 1 1 1 0 CbbQ/NirQ/NorQ C-terminal RuvB_N PF05496.12 gi|282163697|ref|YP_003356082.1| - 0.019 14.7 0.0 0.078 12.7 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|282163697|ref|YP_003356082.1| - 0.021 15.2 0.0 0.072 13.5 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_2 PF07724.14 gi|282163697|ref|YP_003356082.1| - 0.031 14.4 0.0 0.76 9.9 0.0 2.9 4 0 0 4 4 4 0 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|282163697|ref|YP_003356082.1| - 0.035 14.3 0.0 0.064 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|282163697|ref|YP_003356082.1| - 0.045 13.0 0.0 0.096 11.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|282163697|ref|YP_003356082.1| - 0.089 12.5 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|282163697|ref|YP_003356082.1| - 0.11 12.5 0.0 0.23 11.3 0.0 1.6 1 1 0 1 1 1 0 NTPase PIF1 PF05970.14 gi|282163697|ref|YP_003356082.1| - 0.11 11.6 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase Clathrin-link PF09268.10 gi|282163697|ref|YP_003356082.1| - 0.17 11.3 0.4 0.51 9.7 0.1 2.1 2 0 0 2 2 2 0 Clathrin, heavy-chain linker DUF962 PF06127.11 gi|282163698|ref|YP_003356083.1| - 0.041 14.0 0.8 0.098 12.8 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF962) Tmemb_14 PF03647.13 gi|282163698|ref|YP_003356083.1| - 0.059 14.1 0.8 0.059 14.1 0.8 2.3 2 0 0 2 2 2 0 Transmembrane proteins 14C TRM PF02005.16 gi|282163699|ref|YP_003356084.1| - 1.7e-99 333.5 0.0 2.1e-99 333.2 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|282163699|ref|YP_003356084.1| - 0.0025 17.4 0.0 0.0042 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Zn-ribbon_8 PF09723.10 gi|282163699|ref|YP_003356084.1| - 0.0043 17.1 0.9 0.012 15.7 0.9 1.7 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|282163699|ref|YP_003356084.1| - 0.061 13.4 0.5 0.22 11.6 0.3 2.0 2 0 0 2 2 2 0 Double zinc ribbon zf-C3HC4_3 PF13920.6 gi|282163699|ref|YP_003356084.1| - 0.069 13.0 0.1 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.19 gi|282163699|ref|YP_003356084.1| - 0.088 12.8 0.0 0.24 11.4 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Met_10 PF02475.16 gi|282163699|ref|YP_003356084.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein PrmA PF06325.13 gi|282163699|ref|YP_003356084.1| - 0.19 11.1 0.1 0.29 10.5 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF3795 PF12675.7 gi|282163700|ref|YP_003356085.1| - 8.1e-16 58.2 8.1 8.1e-16 58.2 8.1 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF3795) UPF0547 PF10571.9 gi|282163700|ref|YP_003356085.1| - 0.00048 20.2 2.7 0.00048 20.2 2.7 3.3 4 0 0 4 4 4 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.6 gi|282163700|ref|YP_003356085.1| - 0.00071 19.2 0.9 0.00071 19.2 0.9 3.4 3 0 0 3 3 3 1 zinc-ribbon domain DZR PF12773.7 gi|282163700|ref|YP_003356085.1| - 0.0014 18.6 0.8 0.0014 18.6 0.8 3.1 2 1 0 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|282163700|ref|YP_003356085.1| - 0.0045 16.3 1.9 0.0045 16.3 1.9 4.2 4 0 0 4 4 4 1 zinc-ribbon domain HypA PF01155.19 gi|282163700|ref|YP_003356085.1| - 0.0047 16.9 1.6 0.0047 16.9 1.6 2.4 1 1 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_15 PF17032.5 gi|282163700|ref|YP_003356085.1| - 0.44 11.3 13.7 34 5.3 13.7 2.5 1 1 0 1 1 1 0 zinc-ribbon family zf-ACC PF17848.1 gi|282163700|ref|YP_003356085.1| - 3.7 7.7 13.8 11 6.2 0.4 4.1 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain LST1 PF05083.13 gi|282163701|ref|YP_003356086.1| - 1.5 9.1 4.7 2.7 8.3 4.7 1.4 1 0 0 1 1 1 0 LST-1 protein Baculo_11_kDa PF06143.11 gi|282163701|ref|YP_003356086.1| - 3.4 7.3 7.2 4.5 6.9 7.2 1.1 1 0 0 1 1 1 0 Baculovirus 11 kDa family HATPase_c PF02518.26 gi|282163702|ref|YP_003356087.1| - 4.6e-12 46.4 0.0 8.4e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|282163702|ref|YP_003356087.1| - 1e-09 38.8 0.0 1.6e-09 38.2 0.0 1.3 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|282163702|ref|YP_003356087.1| - 8.1e-08 32.7 0.0 1.4e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|282163702|ref|YP_003356087.1| - 4e-06 27.5 0.0 6.6e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|282163702|ref|YP_003356087.1| - 1.8e-05 24.7 0.0 3e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|282163702|ref|YP_003356087.1| - 0.00038 20.3 0.0 0.0009 19.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FTR_C PF02741.15 gi|282163703|ref|YP_003356088.1| - 2.3e-67 225.6 2.3 3.4e-67 225.1 2.3 1.3 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.18 gi|282163703|ref|YP_003356088.1| - 3.4e-61 205.4 0.0 5.5e-61 204.7 0.0 1.3 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase Flg_bb_rod PF00460.20 gi|282163703|ref|YP_003356088.1| - 0.25 11.3 1.3 0.51 10.3 1.3 1.5 1 0 0 1 1 1 0 Flagella basal body rod protein Fer4_13 PF13370.6 gi|282163704|ref|YP_003356089.1| - 3.2e-15 56.4 8.2 3.8e-15 56.2 8.2 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|282163704|ref|YP_003356089.1| - 7.7e-12 45.8 10.0 1e-10 42.2 10.0 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|282163704|ref|YP_003356089.1| - 4.3e-08 32.6 6.5 4.5e-07 29.4 3.5 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282163704|ref|YP_003356089.1| - 1.2e-05 25.8 22.8 0.002 18.7 13.1 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282163704|ref|YP_003356089.1| - 1.3e-05 25.1 3.7 1.3e-05 25.1 3.7 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282163704|ref|YP_003356089.1| - 1.9e-05 24.5 2.5 1.9e-05 24.5 2.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282163704|ref|YP_003356089.1| - 3.7e-05 23.8 12.3 5.9e-05 23.1 12.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282163704|ref|YP_003356089.1| - 0.00049 20.2 10.9 0.00097 19.3 10.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|282163704|ref|YP_003356089.1| - 0.00079 19.5 5.1 0.001 19.1 5.1 1.2 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_4 PF12800.7 gi|282163704|ref|YP_003356089.1| - 0.0012 19.2 0.7 0.0012 19.2 0.7 2.6 2 1 0 2 2 1 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|282163704|ref|YP_003356089.1| - 0.0016 19.4 10.0 0.058 14.3 2.7 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|282163704|ref|YP_003356089.1| - 0.0018 18.3 10.5 0.0034 17.5 10.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282163704|ref|YP_003356089.1| - 0.071 13.7 2.5 0.071 13.7 2.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|282163704|ref|YP_003356089.1| - 0.13 13.3 15.5 0.3 12.1 4.2 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282163704|ref|YP_003356089.1| - 2 8.9 13.1 45 4.6 13.1 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282163704|ref|YP_003356089.1| - 4.9 7.4 11.3 0.14 12.3 2.2 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF2099 PF09872.9 gi|282163705|ref|YP_003356090.1| - 1.4e-109 365.3 1.1 1.5e-109 365.1 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) VEG PF06257.11 gi|282163705|ref|YP_003356090.1| - 0.013 15.5 0.3 0.1 12.7 0.0 2.2 2 0 0 2 2 2 0 Biofilm formation stimulator VEG TPM_phosphatase PF04536.14 gi|282163705|ref|YP_003356090.1| - 0.046 13.9 0.0 0.084 13.0 0.0 1.4 1 0 0 1 1 1 0 TPM domain Methyltransf_11 PF08241.12 gi|282163706|ref|YP_003356091.1| - 5.8e-10 39.7 0.0 2.6e-09 37.6 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282163706|ref|YP_003356091.1| - 9.4e-09 35.9 0.1 2.5e-08 34.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.12 gi|282163706|ref|YP_003356091.1| - 2.9e-08 33.5 0.1 4.4e-08 33.0 0.1 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.6 gi|282163706|ref|YP_003356091.1| - 8.6e-07 28.9 0.0 3.2e-06 27.1 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282163706|ref|YP_003356091.1| - 0.00041 21.0 0.1 0.0013 19.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282163706|ref|YP_003356091.1| - 0.00076 19.3 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Pox_MCEL PF03291.16 gi|282163706|ref|YP_003356091.1| - 0.054 12.6 0.1 0.078 12.1 0.1 1.1 1 0 0 1 1 1 0 mRNA capping enzyme GTP_EFTU PF00009.27 gi|282163707|ref|YP_003356092.1| - 1.5e-31 109.5 0.0 5.8e-31 107.6 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|282163707|ref|YP_003356092.1| - 1.5e-31 108.1 1.0 1.5e-31 108.1 1.0 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|282163707|ref|YP_003356092.1| - 9.4e-21 73.9 2.0 3.2e-20 72.2 2.0 2.0 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|282163707|ref|YP_003356092.1| - 2.7e-11 43.7 6.3 9.9e-11 41.9 0.1 3.0 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|282163707|ref|YP_003356092.1| - 1.7e-07 31.3 0.1 7.2e-07 29.3 0.1 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|282163707|ref|YP_003356092.1| - 0.013 15.3 0.0 0.034 13.9 0.0 1.7 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|282163707|ref|YP_003356092.1| - 0.018 15.1 0.1 0.16 12.0 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Roc PF08477.13 gi|282163707|ref|YP_003356092.1| - 0.072 13.3 0.0 0.25 11.6 0.0 2.0 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Cir_N PF10197.9 gi|282163707|ref|YP_003356092.1| - 1.5 9.1 6.7 3.2 8.0 6.7 1.6 1 0 0 1 1 1 0 N-terminal domain of CBF1 interacting co-repressor CIR NDK PF00334.19 gi|282163708|ref|YP_003356093.1| - 1.4e-58 196.7 0.0 1.6e-58 196.6 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|282163709|ref|YP_003356094.1| - 1.1e-18 67.2 1.4 1.3e-18 66.9 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|282163709|ref|YP_003356094.1| - 5.4e-06 26.2 3.0 8.3e-06 25.7 3.0 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF3268 PF11672.8 gi|282163709|ref|YP_003356094.1| - 0.0081 16.5 0.2 0.0083 16.4 0.2 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain YHS PF04945.13 gi|282163709|ref|YP_003356094.1| - 0.042 13.9 0.5 0.042 13.9 0.5 1.5 2 0 0 2 2 2 0 YHS domain ICAM_N PF03921.14 gi|282163709|ref|YP_003356094.1| - 0.066 12.9 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 Intercellular adhesion molecule (ICAM), N-terminal domain Lar_restr_allev PF14354.6 gi|282163709|ref|YP_003356094.1| - 0.079 13.4 0.9 0.085 13.3 0.9 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar VATC PF18716.1 gi|282163709|ref|YP_003356094.1| - 0.15 11.9 5.1 3.5 7.6 5.1 2.2 1 1 0 1 1 1 0 Vms1-associating treble clef domain Ribosomal_S28e PF01200.18 gi|282163710|ref|YP_003356095.1| - 1.3e-28 98.8 1.0 1.4e-28 98.6 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|282163711|ref|YP_003356096.1| - 1.4e-26 92.0 0.7 1.7e-26 91.8 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|282163711|ref|YP_003356096.1| - 0.0096 15.8 0.1 0.015 15.2 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|282163711|ref|YP_003356096.1| - 0.022 15.2 0.1 0.024 15.1 0.1 1.2 1 0 0 1 1 1 0 eRF1 domain 3 DUF1269 PF06897.12 gi|282163711|ref|YP_003356096.1| - 0.034 14.4 2.6 1.1 9.6 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) Gpr1_Fun34_YaaH PF01184.19 gi|282163712|ref|YP_003356097.1| - 0.019 14.6 0.1 0.019 14.6 0.1 1.0 1 0 0 1 1 1 0 GPR1/FUN34/yaaH family DUF4131 PF13567.6 gi|282163712|ref|YP_003356097.1| - 0.032 13.9 0.0 0.034 13.8 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Neurensin PF14927.6 gi|282163712|ref|YP_003356097.1| - 0.035 13.8 1.1 0.049 13.3 1.1 1.4 1 1 0 1 1 1 0 Neurensin DUF872 PF05915.12 gi|282163712|ref|YP_003356097.1| - 0.19 11.9 0.9 0.21 11.7 0.9 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF3040 PF11239.8 gi|282163712|ref|YP_003356097.1| - 0.23 11.7 3.4 0.29 11.4 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Trypan_PARP PF05887.11 gi|282163714|ref|YP_003356099.1| - 6 6.9 20.6 9.7 6.2 20.6 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DNA_pol_B PF00136.21 gi|282163715|ref|YP_003356100.1| - 1.4e-55 188.8 0.0 2e-55 188.3 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|282163715|ref|YP_003356100.1| - 4.4e-18 65.5 0.1 6.8e-18 64.9 0.1 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_2 PF03175.13 gi|282163715|ref|YP_003356100.1| - 0.0078 15.1 1.0 0.47 9.3 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase type B, organellar and viral DNA_pol_B_exo2 PF10108.9 gi|282163715|ref|YP_003356100.1| - 0.01 15.5 0.1 0.035 13.8 0.0 1.9 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB TMEM119 PF15724.5 gi|282163716|ref|YP_003356101.1| - 0.28 11.2 0.4 0.38 10.8 0.4 1.1 1 0 0 1 1 1 0 TMEM119 family Gemini_mov PF01708.16 gi|282163717|ref|YP_003356102.1| - 0.018 14.8 0.4 0.038 13.7 0.4 1.5 1 0 0 1 1 1 0 Geminivirus putative movement protein Pam17 PF08566.10 gi|282163717|ref|YP_003356102.1| - 0.6 9.9 3.5 0.9 9.4 1.4 1.9 1 1 0 2 2 2 0 Mitochondrial import protein Pam17 RibD_C PF01872.17 gi|282163718|ref|YP_003356103.1| - 2.5e-55 187.4 0.3 2.8e-55 187.3 0.3 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Methyltr_RsmB-F PF01189.17 gi|282163719|ref|YP_003356104.1| - 2.5e-56 190.5 0.0 3.2e-56 190.2 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|282163719|ref|YP_003356104.1| - 5.6e-09 36.4 0.0 2.1e-08 34.6 0.0 1.9 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|282163719|ref|YP_003356104.1| - 0.00011 22.3 0.0 0.00018 21.7 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase POR PF01558.18 gi|282163719|ref|YP_003356104.1| - 0.0083 16.2 0.0 0.02 14.9 0.0 1.6 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Met_10 PF02475.16 gi|282163719|ref|YP_003356104.1| - 0.0087 15.8 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|282163719|ref|YP_003356104.1| - 0.0092 15.8 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282163719|ref|YP_003356104.1| - 0.018 15.7 0.1 0.093 13.4 0.1 2.1 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|282163719|ref|YP_003356104.1| - 0.036 13.5 0.0 0.44 10.0 0.0 2.4 3 0 0 3 3 3 0 Putative methyltransferase LAGLIDADG_2 PF03161.13 gi|282163719|ref|YP_003356104.1| - 0.23 11.5 0.0 0.53 10.3 0.0 1.5 2 0 0 2 2 2 0 LAGLIDADG DNA endonuclease family UPF0113 PF03657.13 gi|282163720|ref|YP_003356105.1| - 4.3e-22 78.2 0.2 6.4e-22 77.6 0.2 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain PUA PF01472.20 gi|282163720|ref|YP_003356105.1| - 0.00012 21.9 0.0 0.00021 21.2 0.0 1.3 1 0 0 1 1 1 1 PUA domain UPF0113_N PF17833.1 gi|282163720|ref|YP_003356105.1| - 0.0025 18.3 0.0 0.0044 17.6 0.0 1.4 1 0 0 1 1 1 1 UPF0113 Pre-PUA domain DUF3575 PF12099.8 gi|282163720|ref|YP_003356105.1| - 0.14 11.4 0.0 0.47 9.7 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3575) DUF3795 PF12675.7 gi|282163721|ref|YP_003356106.1| - 1.4e-06 28.6 13.4 1.4e-06 28.6 13.4 2.7 1 1 2 3 3 3 2 Protein of unknown function (DUF3795) TRAM PF01938.20 gi|282163722|ref|YP_003356107.1| - 4.2e-16 58.7 3.2 4.7e-16 58.5 3.2 1.1 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|282163722|ref|YP_003356107.1| - 0.017 14.8 0.2 0.041 13.6 0.2 1.8 1 1 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Fer4_5 PF12801.7 gi|282163724|ref|YP_003356109.1| - 3.9e-16 58.7 1.2 1.1e-10 41.3 0.0 4.3 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282163724|ref|YP_003356109.1| - 5.3e-08 32.9 13.1 3.6e-05 23.8 1.2 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282163724|ref|YP_003356109.1| - 1.1e-06 28.2 18.4 0.00053 19.7 2.9 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|282163724|ref|YP_003356109.1| - 0.00013 22.1 7.0 0.00013 22.1 7.0 2.8 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282163724|ref|YP_003356109.1| - 0.00013 22.4 15.6 0.092 13.3 5.2 3.5 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282163724|ref|YP_003356109.1| - 0.0024 17.9 18.8 0.0034 17.4 3.9 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282163724|ref|YP_003356109.1| - 0.0043 17.1 1.6 0.0043 17.1 1.6 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282163724|ref|YP_003356109.1| - 0.0059 16.7 18.5 0.032 14.3 14.8 3.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282163724|ref|YP_003356109.1| - 0.0087 16.6 19.1 0.49 11.0 7.1 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282163724|ref|YP_003356109.1| - 0.017 16.0 16.8 0.14 13.1 1.0 3.5 4 0 0 4 4 4 0 4Fe-4S double cluster binding domain DUF2157 PF09925.9 gi|282163724|ref|YP_003356109.1| - 0.025 14.4 0.2 0.025 14.4 0.2 2.5 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) Fer4_8 PF13183.6 gi|282163724|ref|YP_003356109.1| - 0.036 14.5 3.5 0.036 14.5 3.5 2.8 3 1 1 4 4 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282163724|ref|YP_003356109.1| - 0.085 13.4 3.9 0.085 13.4 3.9 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|282163724|ref|YP_003356109.1| - 0.1 12.7 0.2 0.25 11.5 0.1 1.7 2 0 0 2 2 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Salp15 PF12115.8 gi|282163724|ref|YP_003356109.1| - 0.12 12.8 4.5 0.24 11.8 4.5 1.4 1 0 0 1 1 1 0 Salivary protein of 15kDa inhibits CD4+ T cell activation Fer4_21 PF14697.6 gi|282163724|ref|YP_003356109.1| - 0.16 12.1 18.6 0.32 11.2 3.4 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|282163724|ref|YP_003356109.1| - 0.25 12.4 23.0 0.36 11.9 2.7 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Form-deh_trans PF09163.11 gi|282163724|ref|YP_003356109.1| - 0.35 10.7 4.4 3.3 7.6 0.1 2.8 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane NCD3G PF07562.14 gi|282163724|ref|YP_003356109.1| - 7.6 6.6 11.1 3.7 7.6 7.4 2.3 1 1 1 2 2 2 0 Nine Cysteines Domain of family 3 GPCR TrmB PF01978.19 gi|282163725|ref|YP_003356110.1| - 1.2e-19 69.9 0.0 2.5e-19 68.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|282163725|ref|YP_003356110.1| - 1.3e-10 40.8 0.2 2e-10 40.3 0.2 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PLDc_2 PF13091.6 gi|282163725|ref|YP_003356110.1| - 6.9e-05 22.8 0.3 0.00018 21.4 0.3 1.7 1 1 0 1 1 1 1 PLD-like domain HTH_29 PF13551.6 gi|282163725|ref|YP_003356110.1| - 0.00013 21.9 0.1 0.00058 19.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|282163725|ref|YP_003356110.1| - 0.00019 21.5 0.3 0.0012 18.9 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|282163725|ref|YP_003356110.1| - 0.00033 20.4 0.0 0.0015 18.3 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|282163725|ref|YP_003356110.1| - 0.0025 17.9 0.1 0.011 15.8 0.0 2.1 2 1 1 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|282163725|ref|YP_003356110.1| - 0.0025 17.7 0.0 0.0053 16.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|282163725|ref|YP_003356110.1| - 0.0042 16.6 0.0 0.018 14.6 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|282163725|ref|YP_003356110.1| - 0.012 15.2 0.0 0.027 14.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|282163725|ref|YP_003356110.1| - 0.013 15.8 0.0 0.05 13.9 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator HTH_5 PF01022.20 gi|282163725|ref|YP_003356110.1| - 0.014 15.2 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|282163725|ref|YP_003356110.1| - 0.018 14.8 0.0 0.038 13.8 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.22 gi|282163725|ref|YP_003356110.1| - 0.02 14.8 0.0 0.048 13.6 0.0 1.6 1 0 0 1 1 1 0 MarR family Penicillinase_R PF03965.16 gi|282163725|ref|YP_003356110.1| - 0.023 15.0 0.0 0.048 14.0 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_7 PF02796.15 gi|282163725|ref|YP_003356110.1| - 0.048 13.8 0.2 8.8 6.5 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase PadR PF03551.14 gi|282163725|ref|YP_003356110.1| - 0.05 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HMA PF00403.26 gi|282163726|ref|YP_003356111.1| - 2.3e-12 47.2 0.1 2.7e-12 47.0 0.1 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain AsiA PF09010.10 gi|282163726|ref|YP_003356111.1| - 0.018 15.2 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 Anti-Sigma Factor A E1-E2_ATPase PF00122.20 gi|282163727|ref|YP_003356112.1| - 4.4e-52 176.2 1.2 4.4e-52 176.2 1.2 2.7 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|282163727|ref|YP_003356112.1| - 1.6e-43 149.4 4.3 2.4e-43 148.9 4.3 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|282163727|ref|YP_003356112.1| - 4.8e-05 23.9 0.0 0.00017 22.1 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|282163727|ref|YP_003356112.1| - 0.041 13.6 6.1 0.15 11.7 3.8 2.3 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase DUF2148 PF09918.9 gi|282163727|ref|YP_003356112.1| - 0.12 12.5 2.3 0.45 10.6 2.3 2.0 1 0 0 1 1 1 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) GA-like PF17573.2 gi|282163727|ref|YP_003356112.1| - 0.99 9.4 3.8 1.1 9.2 0.2 2.4 2 0 0 2 2 2 0 GA-like domain Peptidase_S24 PF00717.23 gi|282163727|ref|YP_003356112.1| - 1.1 9.3 3.7 5.1 7.1 0.8 3.0 3 0 0 3 3 3 0 Peptidase S24-like Hydrolase PF00702.26 gi|282163728|ref|YP_003356113.1| - 2.5e-20 73.7 0.1 4.3e-20 72.9 0.1 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|282163728|ref|YP_003356113.1| - 0.011 15.9 0.0 0.072 13.2 0.0 2.4 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|282163728|ref|YP_003356113.1| - 0.057 13.1 0.0 2.6 7.7 0.0 2.3 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|282163728|ref|YP_003356113.1| - 0.066 13.6 0.0 0.22 11.9 0.0 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase ABC_tran PF00005.27 gi|282163729|ref|YP_003356114.1| - 2.2e-52 177.2 0.0 1e-26 94.1 0.0 2.4 2 0 0 2 2 2 2 ABC transporter RsgA_GTPase PF03193.16 gi|282163729|ref|YP_003356114.1| - 5.1e-08 33.0 0.4 0.00067 19.6 0.1 2.7 2 0 0 2 2 2 2 RsgA GTPase AAA_21 PF13304.6 gi|282163729|ref|YP_003356114.1| - 6.6e-08 32.7 3.0 0.036 13.9 0.0 4.0 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|282163729|ref|YP_003356114.1| - 1.3e-06 28.9 0.2 0.082 13.3 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|282163729|ref|YP_003356114.1| - 5.2e-05 22.8 7.9 0.021 14.3 0.2 3.9 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|282163729|ref|YP_003356114.1| - 0.00018 21.3 0.3 0.49 10.1 0.0 3.2 3 0 0 3 3 3 2 AAA domain MMR_HSR1 PF01926.23 gi|282163729|ref|YP_003356114.1| - 0.00022 21.3 1.6 0.27 11.3 0.4 3.2 3 0 0 3 3 3 2 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|282163729|ref|YP_003356114.1| - 0.00041 20.6 0.3 0.79 10.0 0.0 3.1 2 2 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|282163729|ref|YP_003356114.1| - 0.0008 19.1 0.2 1.4 8.7 0.1 2.8 3 0 0 3 3 3 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|282163729|ref|YP_003356114.1| - 0.00086 19.9 2.4 0.15 12.5 0.2 2.4 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.25 gi|282163729|ref|YP_003356114.1| - 0.00087 19.0 0.0 0.71 9.5 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain Zeta_toxin PF06414.12 gi|282163729|ref|YP_003356114.1| - 0.0018 17.6 0.0 0.037 13.3 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin IstB_IS21 PF01695.17 gi|282163729|ref|YP_003356114.1| - 0.0022 17.7 0.8 0.91 9.2 0.0 3.3 3 0 0 3 3 3 1 IstB-like ATP binding protein MobB PF03205.14 gi|282163729|ref|YP_003356114.1| - 0.0028 17.5 0.4 1.5 8.7 0.1 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B PhoH PF02562.16 gi|282163729|ref|YP_003356114.1| - 0.0029 17.1 0.3 7.3 6.0 0.1 3.8 3 1 0 3 3 3 0 PhoH-like protein NACHT PF05729.12 gi|282163729|ref|YP_003356114.1| - 0.0033 17.4 0.2 1.1 9.1 0.0 2.9 3 0 0 3 3 3 1 NACHT domain PIF1 PF05970.14 gi|282163729|ref|YP_003356114.1| - 0.0044 16.2 0.2 2.4 7.3 0.1 2.6 2 0 0 2 2 2 1 PIF1-like helicase NB-ARC PF00931.22 gi|282163729|ref|YP_003356114.1| - 0.0045 16.2 1.1 1.2 8.3 0.1 2.7 2 0 0 2 2 2 1 NB-ARC domain Collectrin PF16959.5 gi|282163729|ref|YP_003356114.1| - 0.013 15.3 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Renal amino acid transporter PRK PF00485.18 gi|282163729|ref|YP_003356114.1| - 0.025 14.3 0.2 1.5 8.5 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family ATPase PF06745.13 gi|282163729|ref|YP_003356114.1| - 0.046 13.1 0.9 5.6 6.2 0.1 2.7 2 0 0 2 2 2 0 KaiC Sigma54_activat PF00158.26 gi|282163729|ref|YP_003356114.1| - 0.051 13.3 0.4 14 5.4 0.0 3.1 3 0 0 3 3 3 0 Sigma-54 interaction domain cobW PF02492.19 gi|282163729|ref|YP_003356114.1| - 0.054 13.1 3.2 5.9 6.4 0.1 3.9 4 0 0 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|282163729|ref|YP_003356114.1| - 0.054 13.7 0.3 1.5 9.0 0.0 2.9 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|282163729|ref|YP_003356114.1| - 0.06 13.2 0.3 0.65 9.9 0.0 2.6 3 0 0 3 3 3 0 Adenylylsulphate kinase NOB1_Zn_bind PF08772.11 gi|282163729|ref|YP_003356114.1| - 0.092 12.9 0.1 0.21 11.7 0.1 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like AAA_24 PF13479.6 gi|282163729|ref|YP_003356114.1| - 0.098 12.4 0.3 6.9 6.3 0.1 2.6 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|282163729|ref|YP_003356114.1| - 0.099 12.4 0.1 24 4.7 0.0 2.9 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SbcCD_C PF13558.6 gi|282163729|ref|YP_003356114.1| - 0.12 12.6 0.0 17 5.8 0.0 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Roc PF08477.13 gi|282163729|ref|YP_003356114.1| - 0.12 12.6 0.2 23 5.2 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_7 PF12775.7 gi|282163729|ref|YP_003356114.1| - 0.14 11.6 0.1 14 5.2 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|282163729|ref|YP_003356114.1| - 0.17 11.4 2.1 29 4.1 0.0 4.3 4 1 0 4 4 4 0 AAA domain AAA_18 PF13238.6 gi|282163729|ref|YP_003356114.1| - 0.22 12.0 0.7 5.2 7.6 0.0 3.0 3 0 0 3 3 3 0 AAA domain DUF87 PF01935.17 gi|282163729|ref|YP_003356114.1| - 0.42 10.7 4.3 7.9 6.5 0.1 3.3 3 0 0 3 3 3 0 Helicase HerA, central domain AAA PF00004.29 gi|282163729|ref|YP_003356114.1| - 0.91 9.9 4.6 6.3 7.2 0.0 3.8 4 1 1 5 5 5 0 ATPase family associated with various cellular activities (AAA) Fer2_4 PF13510.6 gi|282163730|ref|YP_003356115.1| - 0.00012 22.1 0.0 0.0032 17.5 0.0 2.3 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Pro_isomerase PF00160.21 gi|282163730|ref|YP_003356115.1| - 0.0035 17.6 0.2 8.3 6.7 0.0 4.0 3 1 0 4 4 4 2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF2102 PF09875.9 gi|282163731|ref|YP_003356116.1| - 1.7e-42 143.4 0.0 2.1e-42 143.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) DUF2112 PF09885.9 gi|282163732|ref|YP_003356117.1| - 5.2e-67 224.3 0.1 5.8e-67 224.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) BcrAD_BadFG PF01869.20 gi|282163733|ref|YP_003356118.1| - 7.3e-58 196.2 5.0 1.1e-57 195.6 5.0 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_C PF02782.16 gi|282163733|ref|YP_003356118.1| - 5.5e-05 23.0 0.1 0.00011 22.0 0.1 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.6 gi|282163733|ref|YP_003356118.1| - 0.048 14.1 2.8 0.2 12.1 0.2 2.6 2 1 0 2 2 2 0 Cell division protein FtsA DUF2113 PF09886.9 gi|282163734|ref|YP_003356119.1| - 7e-65 217.9 0.1 8.6e-65 217.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) MCR_C PF04609.12 gi|282163735|ref|YP_003356120.1| - 1.6e-122 407.8 0.4 1.9e-122 407.6 0.4 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF5643 PF18705.1 gi|282163736|ref|YP_003356121.1| - 0.11 12.5 0.1 0.19 11.7 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5643) DsbD PF02683.15 gi|282163738|ref|YP_003356123.1| - 8.8e-11 42.1 18.8 1.4e-10 41.4 18.8 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|282163738|ref|YP_003356123.1| - 3.5e-09 36.9 20.2 8.1e-09 35.7 20.0 1.7 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.6 gi|282163738|ref|YP_003356123.1| - 0.01 15.9 0.1 0.025 14.6 0.0 1.7 2 0 0 2 2 2 0 Thioredoxin domain CBM_2 PF00553.19 gi|282163738|ref|YP_003356123.1| - 0.013 15.8 0.2 0.024 14.9 0.2 1.4 1 0 0 1 1 1 0 Cellulose binding domain CMD PF02627.20 gi|282163739|ref|YP_003356124.1| - 2.1e-16 59.7 0.1 3.7e-16 58.9 0.1 1.4 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Orthopox_F7 PF05813.12 gi|282163739|ref|YP_003356124.1| - 0.091 12.9 0.6 0.16 12.1 0.6 1.4 1 0 0 1 1 1 0 Orthopoxvirus F7 protein CbiX PF01903.17 gi|282163740|ref|YP_003356125.1| - 1.4e-21 76.8 0.0 5.6e-12 45.9 0.0 2.4 2 0 0 2 2 2 2 CbiX Ferrochelatase PF00762.19 gi|282163740|ref|YP_003356125.1| - 2.4e-05 23.6 0.0 0.0012 18.0 0.0 2.2 1 1 1 2 2 2 2 Ferrochelatase EF-hand_13 PF17958.1 gi|282163740|ref|YP_003356125.1| - 0.13 12.1 0.0 0.83 9.5 0.0 2.1 2 0 0 2 2 2 0 EF-hand domain ARID PF01388.21 gi|282163740|ref|YP_003356125.1| - 0.2 12.4 0.0 24 5.7 0.0 2.4 2 0 0 2 2 2 0 ARID/BRIGHT DNA binding domain NTPase_1 PF03266.15 gi|282163740|ref|YP_003356125.1| - 0.21 11.5 0.0 25 4.7 0.0 2.4 2 0 0 2 2 2 0 NTPase NikR_C PF08753.11 gi|282163742|ref|YP_003356127.1| - 5.6e-32 109.7 3.3 7.9e-32 109.3 3.3 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|282163742|ref|YP_003356127.1| - 8.3e-10 38.2 0.0 1.7e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|282163742|ref|YP_003356127.1| - 0.0037 17.4 0.0 0.025 14.7 0.0 2.0 1 1 1 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF4751 PF15942.5 gi|282163742|ref|YP_003356127.1| - 0.012 15.5 0.3 0.02 14.8 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4751) RHH_8 PF17723.1 gi|282163742|ref|YP_003356127.1| - 0.07 13.3 0.0 0.16 12.2 0.0 1.5 1 1 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family CbiA PF01656.23 gi|282163743|ref|YP_003356128.1| - 2.6e-13 50.1 0.0 4.2e-13 49.5 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|282163743|ref|YP_003356128.1| - 5.1e-08 32.7 0.3 1.4e-07 31.2 0.3 1.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|282163743|ref|YP_003356128.1| - 5.7e-08 32.9 0.0 1.1e-07 32.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|282163743|ref|YP_003356128.1| - 2.6e-06 26.9 0.2 7.1e-06 25.5 0.1 1.7 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|282163743|ref|YP_003356128.1| - 3.5e-06 26.4 0.5 7.7e-06 25.3 0.2 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|282163743|ref|YP_003356128.1| - 5.5e-06 26.0 1.7 1.3e-05 24.8 1.5 1.9 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|282163743|ref|YP_003356128.1| - 2e-05 24.2 0.0 0.00018 21.1 0.0 2.0 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ AAA_25 PF13481.6 gi|282163743|ref|YP_003356128.1| - 7.5e-05 22.4 0.2 0.0016 18.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|282163743|ref|YP_003356128.1| - 0.0001 22.0 0.1 0.0012 18.5 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|282163743|ref|YP_003356128.1| - 0.00013 21.9 0.0 0.00021 21.2 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase CLP1_P PF16575.5 gi|282163743|ref|YP_003356128.1| - 0.0004 20.2 0.0 0.0013 18.5 0.0 1.8 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF87 PF01935.17 gi|282163743|ref|YP_003356128.1| - 0.00044 20.4 0.0 0.00077 19.6 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain Zeta_toxin PF06414.12 gi|282163743|ref|YP_003356128.1| - 0.0007 18.9 0.1 0.0012 18.1 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin ATP_bind_1 PF03029.17 gi|282163743|ref|YP_003356128.1| - 0.0014 18.4 0.0 0.0029 17.4 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|282163743|ref|YP_003356128.1| - 0.0023 17.7 0.0 0.0074 16.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|282163743|ref|YP_003356128.1| - 0.0035 17.9 0.0 0.0075 16.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|282163743|ref|YP_003356128.1| - 0.0041 16.6 0.0 0.0069 15.9 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 MeaB PF03308.16 gi|282163743|ref|YP_003356128.1| - 0.0076 15.3 0.1 0.014 14.4 0.1 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB TrkA_N PF02254.18 gi|282163743|ref|YP_003356128.1| - 0.014 15.6 0.1 0.33 11.2 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain ATPase PF06745.13 gi|282163743|ref|YP_003356128.1| - 0.017 14.5 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 KaiC AAA_10 PF12846.7 gi|282163743|ref|YP_003356128.1| - 0.021 13.8 0.1 0.049 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain ABC_tran PF00005.27 gi|282163743|ref|YP_003356128.1| - 0.027 15.0 0.1 0.061 13.8 0.0 1.7 2 0 0 2 2 1 0 ABC transporter ADH_zinc_N PF00107.26 gi|282163743|ref|YP_003356128.1| - 0.035 14.1 0.0 0.54 10.2 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding dehydrogenase RsgA_GTPase PF03193.16 gi|282163743|ref|YP_003356128.1| - 0.036 14.0 0.0 11 5.9 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase TrwB_AAD_bind PF10412.9 gi|282163743|ref|YP_003356128.1| - 0.051 12.5 0.1 0.074 12.0 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.6 gi|282163743|ref|YP_003356128.1| - 0.087 13.0 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|282163743|ref|YP_003356128.1| - 0.092 12.8 0.3 1.9 8.6 0.3 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|282163743|ref|YP_003356128.1| - 0.1 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain UDPG_MGDP_dh_N PF03721.14 gi|282163743|ref|YP_003356128.1| - 0.13 11.8 0.0 0.35 10.4 0.0 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thymidylate_kin PF02223.17 gi|282163743|ref|YP_003356128.1| - 0.13 11.9 0.1 0.38 10.4 0.0 1.7 2 0 0 2 2 2 0 Thymidylate kinase IstB_IS21 PF01695.17 gi|282163743|ref|YP_003356128.1| - 0.16 11.7 0.1 0.27 10.9 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein PRK PF00485.18 gi|282163743|ref|YP_003356128.1| - 0.16 11.7 0.0 0.35 10.6 0.0 1.6 2 0 0 2 2 1 0 Phosphoribulokinase / Uridine kinase family NikR_C PF08753.11 gi|282163744|ref|YP_003356129.1| - 2e-26 91.9 1.0 3.6e-26 91.1 1.0 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|282163744|ref|YP_003356129.1| - 5.2e-07 29.4 0.0 8.7e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|282163744|ref|YP_003356129.1| - 0.15 12.2 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system ABC_tran PF00005.27 gi|282163745|ref|YP_003356130.1| - 2e-30 106.1 0.0 2.9e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163745|ref|YP_003356130.1| - 5.3e-09 36.3 0.2 0.00037 20.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282163745|ref|YP_003356130.1| - 2e-06 27.4 0.1 0.005 16.3 0.0 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|282163745|ref|YP_003356130.1| - 0.00014 22.3 0.0 0.00043 20.7 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|282163745|ref|YP_003356130.1| - 0.00061 20.2 0.0 0.0013 19.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|282163745|ref|YP_003356130.1| - 0.00078 18.4 0.6 0.31 9.8 0.0 2.8 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|282163745|ref|YP_003356130.1| - 0.0028 17.4 0.0 0.008 15.9 0.1 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|282163745|ref|YP_003356130.1| - 0.0029 18.1 0.1 0.0044 17.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|282163745|ref|YP_003356130.1| - 0.0055 16.7 0.0 0.0086 16.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|282163745|ref|YP_003356130.1| - 0.011 15.7 0.0 0.045 13.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|282163745|ref|YP_003356130.1| - 0.014 15.3 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|282163745|ref|YP_003356130.1| - 0.021 14.6 0.1 0.057 13.2 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|282163745|ref|YP_003356130.1| - 0.022 14.3 0.9 0.48 10.0 0.1 2.8 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|282163745|ref|YP_003356130.1| - 0.022 14.7 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ATP-synt_ab PF00006.25 gi|282163745|ref|YP_003356130.1| - 0.024 14.3 0.1 0.027 14.1 0.1 1.2 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.6 gi|282163745|ref|YP_003356130.1| - 0.026 14.7 0.0 0.046 13.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|282163745|ref|YP_003356130.1| - 0.031 14.2 0.2 0.069 13.0 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase NB-ARC PF00931.22 gi|282163745|ref|YP_003356130.1| - 0.032 13.4 0.0 0.062 12.5 0.0 1.7 1 1 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|282163745|ref|YP_003356130.1| - 0.036 14.6 0.0 0.26 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|282163745|ref|YP_003356130.1| - 0.042 13.4 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|282163745|ref|YP_003356130.1| - 0.046 14.0 0.0 0.09 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|282163745|ref|YP_003356130.1| - 0.049 12.9 0.0 0.091 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|282163745|ref|YP_003356130.1| - 0.053 13.8 0.0 0.21 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|282163745|ref|YP_003356130.1| - 0.081 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RuvB_N PF05496.12 gi|282163745|ref|YP_003356130.1| - 0.084 12.6 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain APS_kinase PF01583.20 gi|282163745|ref|YP_003356130.1| - 0.12 12.2 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase RNA_helicase PF00910.22 gi|282163745|ref|YP_003356130.1| - 0.14 12.6 0.0 0.31 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|282163745|ref|YP_003356130.1| - 0.15 11.7 0.0 0.44 10.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|282163746|ref|YP_003356131.1| - 3.4e-87 292.4 31.5 4.1e-87 292.1 31.5 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|282163746|ref|YP_003356131.1| - 0.00066 19.3 17.0 0.0011 18.5 17.0 1.4 1 0 0 1 1 1 1 ABC 3 transport family Coa1 PF08695.10 gi|282163746|ref|YP_003356131.1| - 0.0083 15.9 0.2 0.018 14.8 0.2 1.5 1 0 0 1 1 1 1 Cytochrome oxidase complex assembly protein 1 Peripla_BP_2 PF01497.18 gi|282163747|ref|YP_003356132.1| - 7.5e-28 97.7 1.5 1e-27 97.2 1.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Neurokinin_B PF03823.14 gi|282163747|ref|YP_003356132.1| - 0.022 14.8 0.1 0.039 14.0 0.1 1.4 1 0 0 1 1 1 0 Neurokinin B DUF4330 PF14221.6 gi|282163747|ref|YP_003356132.1| - 0.05 13.8 1.1 0.1 12.8 1.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) ZnuA PF01297.17 gi|282163748|ref|YP_003356133.1| - 4.1e-18 65.7 0.9 5.7e-18 65.2 0.9 1.2 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic TrkA_N PF02254.18 gi|282163748|ref|YP_003356133.1| - 0.073 13.3 0.0 0.66 10.3 0.0 2.3 1 1 1 2 2 2 0 TrkA-N domain ABC-3 PF00950.17 gi|282163749|ref|YP_003356134.1| - 9.3e-48 163.0 45.0 1.1e-47 162.7 45.0 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|282163749|ref|YP_003356134.1| - 0.00059 18.9 44.0 0.005 15.9 44.0 2.0 1 1 0 1 1 1 1 FecCD transport family DUF3482 PF11981.8 gi|282163749|ref|YP_003356134.1| - 1.5 8.1 2.8 2.1 7.6 2.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Plasmod_dom_1 PF09715.10 gi|282163749|ref|YP_003356134.1| - 8.2 6.6 8.5 2.5 8.2 0.2 3.3 3 0 0 3 3 3 0 Plasmodium protein of unknown function (Plasmod_dom_1) ABC_tran PF00005.27 gi|282163750|ref|YP_003356135.1| - 7e-26 91.4 0.0 8.9e-26 91.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163750|ref|YP_003356135.1| - 9.7e-10 38.7 0.0 8e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|282163750|ref|YP_003356135.1| - 3.6e-05 24.4 0.1 5.6e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|282163750|ref|YP_003356135.1| - 4.8e-05 22.9 0.1 0.039 13.4 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|282163750|ref|YP_003356135.1| - 0.00035 20.7 0.3 0.027 14.7 0.3 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.15 gi|282163750|ref|YP_003356135.1| - 0.0014 18.6 0.3 0.29 11.0 0.1 2.2 2 0 0 2 2 2 1 NTPase AAA_27 PF13514.6 gi|282163750|ref|YP_003356135.1| - 0.002 17.7 0.0 0.0033 17.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|282163750|ref|YP_003356135.1| - 0.0074 16.0 0.1 0.014 15.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|282163750|ref|YP_003356135.1| - 0.0079 16.6 0.0 0.011 16.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|282163750|ref|YP_003356135.1| - 0.015 15.0 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|282163750|ref|YP_003356135.1| - 0.018 14.7 0.1 0.028 14.0 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 gi|282163750|ref|YP_003356135.1| - 0.037 13.2 0.1 0.056 12.6 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|282163750|ref|YP_003356135.1| - 0.043 13.7 0.0 0.27 11.1 0.0 1.9 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|282163750|ref|YP_003356135.1| - 0.063 13.2 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|282163750|ref|YP_003356135.1| - 0.069 13.4 0.1 0.18 12.1 0.1 1.6 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|282163750|ref|YP_003356135.1| - 0.075 12.9 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 gi|282163750|ref|YP_003356135.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_15 PF13175.6 gi|282163750|ref|YP_003356135.1| - 0.11 12.1 0.1 0.22 11.2 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain T2SSE PF00437.20 gi|282163750|ref|YP_003356135.1| - 0.18 10.8 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein FmdE PF02663.14 gi|282163751|ref|YP_003356136.1| - 4.1e-22 78.6 0.0 5.1e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Nuc_deoxyrib_tr PF05014.15 gi|282163752|ref|YP_003356137.1| - 8.9e-16 58.1 0.0 1.1e-15 57.8 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 gi|282163752|ref|YP_003356137.1| - 3.7e-07 30.4 0.0 4.8e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase like DUF4406 PF14359.6 gi|282163752|ref|YP_003356137.1| - 0.17 12.4 0.0 0.24 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4406) ABC_tran PF00005.27 gi|282163753|ref|YP_003356138.1| - 4.2e-32 111.5 0.0 1.1e-31 110.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|282163753|ref|YP_003356138.1| - 4.5e-15 56.2 1.1 1.1e-08 35.3 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|282163753|ref|YP_003356138.1| - 2.6e-08 34.0 0.0 0.002 17.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|282163753|ref|YP_003356138.1| - 1.2e-07 31.4 0.0 5.9e-07 29.1 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282163753|ref|YP_003356138.1| - 5.6e-06 26.0 0.0 1.1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|282163753|ref|YP_003356138.1| - 0.0018 18.5 0.0 0.0035 17.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|282163753|ref|YP_003356138.1| - 0.002 18.3 0.0 0.0042 17.2 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_23 PF13476.6 gi|282163753|ref|YP_003356138.1| - 0.003 18.1 0.0 0.0041 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|282163753|ref|YP_003356138.1| - 0.0036 16.7 0.0 0.0061 15.9 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF3584 PF12128.8 gi|282163753|ref|YP_003356138.1| - 0.0036 14.9 0.0 0.0053 14.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_16 PF13191.6 gi|282163753|ref|YP_003356138.1| - 0.015 15.6 0.0 0.021 15.2 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain HSL_N PF06350.12 gi|282163753|ref|YP_003356138.1| - 0.038 13.0 0.8 4.4 6.2 0.0 2.1 2 0 0 2 2 2 0 Hormone-sensitive lipase (HSL) N-terminus AAA_27 PF13514.6 gi|282163753|ref|YP_003356138.1| - 0.041 13.5 0.0 0.09 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|282163753|ref|YP_003356138.1| - 0.05 14.1 0.8 0.15 12.6 0.1 2.3 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|282163753|ref|YP_003356138.1| - 0.095 13.1 0.0 0.28 11.6 0.0 1.8 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.12 gi|282163753|ref|YP_003356138.1| - 0.14 12.1 0.0 0.53 10.2 0.0 1.8 2 0 0 2 2 2 0 NACHT domain SbcCD_C PF13558.6 gi|282163753|ref|YP_003356138.1| - 0.14 12.4 0.0 0.94 9.8 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit CbiQ PF02361.16 gi|282163754|ref|YP_003356139.1| - 4.3e-36 124.6 10.0 6.4e-36 124.0 10.0 1.2 1 0 0 1 1 1 1 Cobalt transport protein CbiM PF01891.16 gi|282163755|ref|YP_003356140.1| - 5.4e-61 206.0 11.3 6.1e-61 205.9 11.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF1129 PF06570.11 gi|282163755|ref|YP_003356140.1| - 1.9 7.9 5.7 3.4 7.1 1.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) PDGLE PF13190.6 gi|282163756|ref|YP_003356141.1| - 2.8e-07 30.3 0.4 4.5e-07 29.7 0.4 1.4 1 1 0 1 1 1 1 PDGLE domain MttA_Hcf106 PF02416.16 gi|282163756|ref|YP_003356141.1| - 0.14 11.5 0.6 0.33 10.3 0.6 1.6 1 0 0 1 1 1 0 mttA/Hcf106 family DUF1269 PF06897.12 gi|282163756|ref|YP_003356141.1| - 2.3 8.6 4.9 5.9 7.2 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Insulin_TMD PF17870.1 gi|282163756|ref|YP_003356141.1| - 8.6 6.5 6.9 15 5.7 0.8 2.2 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment PDGLE PF13190.6 gi|282163757|ref|YP_003356142.1| - 2e-08 34.0 0.2 3.7e-08 33.2 0.2 1.4 1 1 0 1 1 1 1 PDGLE domain Yip1 PF04893.17 gi|282163757|ref|YP_003356142.1| - 0.0063 16.2 0.8 0.0077 16.0 0.8 1.1 1 0 0 1 1 1 1 Yip1 domain DUF2613 PF11021.8 gi|282163757|ref|YP_003356142.1| - 0.019 15.1 1.5 0.039 14.1 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) LEA_5 PF00477.17 gi|282163758|ref|YP_003356143.1| - 3.2e-07 30.8 17.9 0.00074 19.9 5.2 2.0 1 1 1 2 2 2 2 Small hydrophilic plant seed protein KGG PF10685.9 gi|282163758|ref|YP_003356143.1| - 0.00019 21.6 25.1 0.0086 16.3 0.3 4.3 4 0 0 4 4 4 3 Stress-induced bacterial acidophilic repeat motif SASP PF00269.20 gi|282163758|ref|YP_003356143.1| - 0.84 9.7 11.5 1.4 9.0 0.3 2.9 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type TcdB_toxin_midN PF12256.8 gi|282163758|ref|YP_003356143.1| - 1.6 8.0 5.0 7.4 5.9 0.7 2.0 1 1 1 2 2 2 0 Insecticide toxin TcdB middle/N-terminal region Mfp-3 PF04202.13 gi|282163758|ref|YP_003356143.1| - 7.6 7.0 8.9 4.2 7.8 2.8 2.1 1 1 1 2 2 2 0 Foot protein 3 KRTAP PF11759.8 gi|282163759|ref|YP_003356144.1| - 0.062 13.9 6.5 0.07 13.7 6.5 1.1 1 0 0 1 1 1 0 Keratin-associated matrix Na_H_Exchanger PF00999.21 gi|282163760|ref|YP_003356145.1| - 1.3e-46 159.2 47.8 1.6e-46 158.8 47.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family AP_endonuc_2 PF01261.24 gi|282163761|ref|YP_003356146.1| - 8.4e-14 51.5 0.0 1.1e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|282163761|ref|YP_003356146.1| - 0.0072 15.6 0.0 0.013 14.8 0.0 1.4 1 1 0 1 1 1 1 UV-endonuclease UvdE KGG PF10685.9 gi|282163762|ref|YP_003356147.1| - 7.5e-07 29.2 10.5 0.00018 21.6 0.1 3.0 2 1 0 2 2 2 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282163762|ref|YP_003356147.1| - 0.00071 20.0 7.0 0.0011 19.4 7.0 1.4 1 1 0 1 1 1 1 Small hydrophilic plant seed protein Phasin PF05597.11 gi|282163762|ref|YP_003356147.1| - 0.0073 16.3 0.8 0.0096 15.9 0.4 1.4 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) SASP PF00269.20 gi|282163762|ref|YP_003356147.1| - 0.064 13.3 5.5 1.5 8.9 0.9 2.2 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type KGG PF10685.9 gi|282163763|ref|YP_003356148.1| - 3.3e-07 30.3 10.1 0.0015 18.8 0.1 3.4 3 0 0 3 3 3 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282163763|ref|YP_003356148.1| - 0.01 16.3 12.5 0.014 15.9 12.5 1.2 1 0 0 1 1 1 0 Small hydrophilic plant seed protein SASP PF00269.20 gi|282163763|ref|YP_003356148.1| - 0.3 11.1 8.6 1.7 8.8 0.5 2.5 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type ABC_tran PF00005.27 gi|282163764|ref|YP_003356149.1| - 4.3e-31 108.3 0.0 8.8e-31 107.3 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|282163764|ref|YP_003356149.1| - 1.3e-08 35.0 3.9 0.0002 21.3 0.6 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282163764|ref|YP_003356149.1| - 2.7e-06 27.0 0.3 0.00033 20.2 0.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282163764|ref|YP_003356149.1| - 5.1e-05 22.9 0.1 0.00011 21.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|282163764|ref|YP_003356149.1| - 0.0034 17.1 1.5 0.021 14.6 0.0 2.4 3 0 0 3 3 3 1 AAA domain Rad17 PF03215.15 gi|282163764|ref|YP_003356149.1| - 0.0046 16.9 0.2 0.011 15.6 0.2 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|282163764|ref|YP_003356149.1| - 0.0059 17.0 0.2 0.0059 17.0 0.2 2.3 2 1 0 2 2 1 1 AAA ATPase domain KAP_NTPase PF07693.14 gi|282163764|ref|YP_003356149.1| - 0.011 15.0 0.1 0.047 12.9 0.0 1.7 1 1 1 2 2 2 0 KAP family P-loop domain AAA_18 PF13238.6 gi|282163764|ref|YP_003356149.1| - 0.012 16.1 0.1 0.036 14.6 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_23 PF13476.6 gi|282163764|ref|YP_003356149.1| - 0.018 15.5 0.2 0.037 14.5 0.2 1.4 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|282163764|ref|YP_003356149.1| - 0.02 14.1 0.1 0.059 12.5 0.0 1.7 2 0 0 2 2 2 0 PIF1-like helicase ATP_bind_1 PF03029.17 gi|282163764|ref|YP_003356149.1| - 0.022 14.5 0.6 0.084 12.6 0.1 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Adeno_IVa2 PF02456.15 gi|282163764|ref|YP_003356149.1| - 0.03 13.1 0.0 0.072 11.9 0.0 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_5 PF07728.14 gi|282163764|ref|YP_003356149.1| - 0.032 14.2 0.1 0.11 12.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 gi|282163764|ref|YP_003356149.1| - 0.032 13.9 0.3 0.057 13.1 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|282163764|ref|YP_003356149.1| - 0.032 14.5 1.8 0.29 11.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|282163764|ref|YP_003356149.1| - 0.035 13.1 0.5 0.064 12.2 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB T2SSE PF00437.20 gi|282163764|ref|YP_003356149.1| - 0.042 12.9 0.0 0.087 11.9 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|282163764|ref|YP_003356149.1| - 0.047 13.6 0.0 0.13 12.1 0.0 2.0 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_27 PF13514.6 gi|282163764|ref|YP_003356149.1| - 0.053 13.1 0.0 0.089 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|282163764|ref|YP_003356149.1| - 0.055 12.1 0.3 3.5 6.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|282163764|ref|YP_003356149.1| - 0.061 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATP-synt_ab PF00006.25 gi|282163764|ref|YP_003356149.1| - 0.094 12.4 0.0 0.27 10.9 0.0 1.5 1 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PRK PF00485.18 gi|282163764|ref|YP_003356149.1| - 0.095 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Mg_chelatase PF01078.21 gi|282163764|ref|YP_003356149.1| - 0.11 11.8 0.0 0.28 10.5 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|282163764|ref|YP_003356149.1| - 0.13 11.9 0.2 0.24 11.1 0.2 1.4 1 0 0 1 1 1 0 AAA domain GSH-S_N PF02951.14 gi|282163764|ref|YP_003356149.1| - 0.15 12.2 0.0 0.44 10.7 0.0 1.8 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, N-terminal domain Thymidylate_kin PF02223.17 gi|282163764|ref|YP_003356149.1| - 0.15 11.7 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA PF00004.29 gi|282163764|ref|YP_003356149.1| - 0.16 12.4 0.3 1.8 9.0 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|282163764|ref|YP_003356149.1| - 0.19 12.2 0.0 0.4 11.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase FecCD PF01032.18 gi|282163765|ref|YP_003356150.1| - 6.2e-92 307.9 41.2 8e-92 307.6 41.2 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|282163765|ref|YP_003356150.1| - 0.0002 21.0 19.4 0.0002 21.0 19.4 2.2 2 1 0 2 2 2 1 ABC 3 transport family HTH_IclR PF09339.10 gi|282163766|ref|YP_003356151.1| - 1.1e-08 34.7 0.0 2.3e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|282163766|ref|YP_003356151.1| - 4.7e-08 32.8 0.2 8.1e-08 32.0 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|282163766|ref|YP_003356151.1| - 3.3e-07 29.8 0.1 9e-07 28.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|282163766|ref|YP_003356151.1| - 5e-07 29.5 0.0 1.1e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|282163766|ref|YP_003356151.1| - 7.8e-07 29.1 0.0 1.7e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|282163766|ref|YP_003356151.1| - 1.3e-05 25.0 1.6 2.3e-05 24.2 0.5 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|282163766|ref|YP_003356151.1| - 1.5e-05 25.4 0.0 2.8e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|282163766|ref|YP_003356151.1| - 1.6e-05 24.7 0.0 3.7e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|282163766|ref|YP_003356151.1| - 0.00016 21.8 0.2 0.0028 17.8 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.12 gi|282163766|ref|YP_003356151.1| - 0.00069 19.2 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.20 gi|282163766|ref|YP_003356151.1| - 0.00079 19.7 0.1 0.0016 18.7 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator FaeA PF04703.12 gi|282163766|ref|YP_003356151.1| - 0.0013 19.1 0.0 0.0025 18.1 0.0 1.5 1 0 0 1 1 1 1 FaeA-like protein PadR PF03551.14 gi|282163766|ref|YP_003356151.1| - 0.0027 17.7 0.2 0.0069 16.3 0.1 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.6 gi|282163766|ref|YP_003356151.1| - 0.0061 16.5 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_micro PF17007.5 gi|282163766|ref|YP_003356151.1| - 0.007 15.2 0.0 0.0094 14.8 0.0 1.1 1 0 0 1 1 1 1 HTH-like HTH_Tnp_1 PF01527.20 gi|282163766|ref|YP_003356151.1| - 0.0098 16.2 0.0 0.023 15.0 0.0 1.6 1 1 0 1 1 1 1 Transposase B-block_TFIIIC PF04182.12 gi|282163766|ref|YP_003356151.1| - 0.011 15.9 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC FtsK_gamma PF09397.10 gi|282163766|ref|YP_003356151.1| - 0.011 15.5 0.0 0.06 13.2 0.0 2.1 1 1 0 1 1 1 0 Ftsk gamma domain Sigma70_r4 PF04545.16 gi|282163766|ref|YP_003356151.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.6 gi|282163766|ref|YP_003356151.1| - 0.014 15.4 0.0 0.023 14.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_10 PF04967.12 gi|282163766|ref|YP_003356151.1| - 0.016 15.0 0.5 0.064 13.1 0.0 2.2 2 1 1 3 3 3 0 HTH DNA binding domain TFIIE_alpha PF02002.17 gi|282163766|ref|YP_003356151.1| - 0.022 14.6 0.9 0.031 14.1 0.1 1.6 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_23 PF13384.6 gi|282163766|ref|YP_003356151.1| - 0.035 13.9 0.0 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain LexA_DNA_bind PF01726.16 gi|282163766|ref|YP_003356151.1| - 0.042 13.6 0.0 0.087 12.6 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_38 PF13936.6 gi|282163766|ref|YP_003356151.1| - 0.079 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_S25 PF03297.15 gi|282163766|ref|YP_003356151.1| - 0.12 12.6 0.1 0.21 11.8 0.1 1.4 1 0 0 1 1 1 0 S25 ribosomal protein PolyA_pol_RNAbd PF12627.7 gi|282163766|ref|YP_003356151.1| - 0.14 11.9 0.1 7.3 6.4 0.1 2.4 2 0 0 2 2 2 0 Probable RNA and SrmB- binding site of polymerase A HTH_28 PF13518.6 gi|282163766|ref|YP_003356151.1| - 0.15 12.2 0.0 0.3 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|282163766|ref|YP_003356151.1| - 0.15 11.5 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.6 gi|282163766|ref|YP_003356151.1| - 0.16 11.9 0.0 0.39 10.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Bact_lectin PF18483.1 gi|282163767|ref|YP_003356152.1| - 2.2 8.2 6.7 2.4 8.1 6.7 1.2 1 1 0 1 1 1 0 Bacterial lectin zinc_ribbon_5 PF13719.6 gi|282163770|ref|YP_003356155.1| - 0.012 15.3 0.5 0.81 9.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|282163770|ref|YP_003356155.1| - 0.016 15.2 0.3 0.039 14.0 0.3 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-FPG_IleRS PF06827.14 gi|282163770|ref|YP_003356155.1| - 0.016 15.0 0.4 3.7 7.5 0.0 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.6 gi|282163770|ref|YP_003356155.1| - 0.022 14.2 1.5 1.2 8.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|282163770|ref|YP_003356155.1| - 0.024 14.4 1.4 1.4 8.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|282163770|ref|YP_003356155.1| - 0.027 14.4 0.6 2 8.4 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|282163770|ref|YP_003356155.1| - 0.034 14.3 0.1 2.1 8.5 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Mu-like_Com PF10122.9 gi|282163770|ref|YP_003356155.1| - 0.047 13.1 0.1 7.9 6.0 0.0 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com Ogr_Delta PF04606.12 gi|282163770|ref|YP_003356155.1| - 0.075 13.0 0.6 0.66 10.0 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger HypA PF01155.19 gi|282163770|ref|YP_003356155.1| - 0.077 13.0 0.2 0.26 11.3 0.2 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 gi|282163770|ref|YP_003356155.1| - 0.078 12.9 0.4 3.8 7.5 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-IS66 PF13005.7 gi|282163770|ref|YP_003356155.1| - 0.11 13.0 1.3 2.6 8.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf_UBZ PF18439.1 gi|282163770|ref|YP_003356155.1| - 0.11 12.1 2.2 0.71 9.5 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-tcix PF14952.6 gi|282163770|ref|YP_003356155.1| - 0.15 11.7 2.3 5.7 6.7 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF983 PF06170.12 gi|282163770|ref|YP_003356155.1| - 0.18 12.2 0.3 11 6.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) YhfH PF14149.6 gi|282163770|ref|YP_003356155.1| - 0.19 11.7 2.4 1.9 8.5 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein DUF35_N PF12172.8 gi|282163770|ref|YP_003356155.1| - 0.49 10.3 4.0 1.3 9.0 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin_2 PF18073.1 gi|282163770|ref|YP_003356155.1| - 0.74 9.6 4.5 7.7 6.3 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain AT_hook PF02178.19 gi|282163771|ref|YP_003356156.1| - 0.075 13.0 7.2 0.23 11.4 7.2 1.9 1 0 0 1 1 1 0 AT hook motif HTH_45 PF14947.6 gi|282163772|ref|YP_003356157.1| - 0.00074 19.5 0.2 0.0034 17.3 0.2 1.9 1 1 1 2 2 2 1 Winged helix-turn-helix 3-HAO PF06052.12 gi|282163772|ref|YP_003356157.1| - 0.053 13.2 0.0 0.06 13.0 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase DUF4364 PF14277.6 gi|282163772|ref|YP_003356157.1| - 0.09 12.5 0.1 0.43 10.3 0.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4364) Methyltransf_25 PF13649.6 gi|282163774|ref|YP_003356159.1| - 1.7e-09 38.3 0.0 2.8e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282163774|ref|YP_003356159.1| - 3.1e-08 34.2 0.0 5e-08 33.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282163774|ref|YP_003356159.1| - 3.1e-08 34.3 0.0 4.9e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282163774|ref|YP_003356159.1| - 9.3e-05 22.3 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163774|ref|YP_003356159.1| - 0.00013 21.8 0.0 0.00017 21.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|282163774|ref|YP_003356159.1| - 0.0032 17.1 0.0 0.0047 16.5 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|282163774|ref|YP_003356159.1| - 0.047 13.7 0.0 0.061 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_9 PF08003.11 gi|282163774|ref|YP_003356159.1| - 0.057 12.3 0.1 1.5 7.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|282163774|ref|YP_003356159.1| - 0.069 12.5 0.0 0.097 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|282163774|ref|YP_003356159.1| - 0.074 12.6 0.0 0.099 12.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|282163774|ref|YP_003356159.1| - 0.093 12.0 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|282163774|ref|YP_003356159.1| - 0.17 11.5 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) ABC_tran PF00005.27 gi|282163775|ref|YP_003356160.1| - 6.9e-26 91.4 0.0 1.1e-25 90.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163775|ref|YP_003356160.1| - 2e-12 47.5 0.0 9.4e-08 32.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|282163775|ref|YP_003356160.1| - 0.00017 20.4 0.0 0.14 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.6 gi|282163775|ref|YP_003356160.1| - 0.0024 18.6 0.0 0.0081 16.9 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|282163775|ref|YP_003356160.1| - 0.0039 16.9 0.4 0.19 11.4 0.1 2.2 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|282163775|ref|YP_003356160.1| - 0.0044 16.7 0.0 0.008 15.8 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|282163775|ref|YP_003356160.1| - 0.005 17.4 0.0 0.009 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|282163775|ref|YP_003356160.1| - 0.015 15.0 0.0 5.3 6.6 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|282163775|ref|YP_003356160.1| - 0.046 14.1 0.1 0.28 11.6 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|282163775|ref|YP_003356160.1| - 0.048 13.6 0.0 0.088 12.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Thymidylate_kin PF02223.17 gi|282163775|ref|YP_003356160.1| - 0.088 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_16 PF13191.6 gi|282163775|ref|YP_003356160.1| - 0.11 12.9 0.1 0.19 12.1 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 gi|282163775|ref|YP_003356160.1| - 0.11 11.4 0.7 0.25 10.3 0.1 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_29 PF13555.6 gi|282163775|ref|YP_003356160.1| - 0.17 11.6 0.1 0.29 10.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC2_membrane_2 PF12679.7 gi|282163776|ref|YP_003356161.1| - 4.1e-14 52.5 21.2 5.3e-14 52.2 21.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|282163776|ref|YP_003356161.1| - 2.2e-10 40.3 15.6 5e-10 39.2 15.6 1.5 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|282163776|ref|YP_003356161.1| - 4.7e-10 39.7 14.7 4.7e-10 39.7 14.7 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|282163776|ref|YP_003356161.1| - 2.2e-06 27.0 19.2 2.2e-06 27.0 19.2 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ArAE_1 PF06081.11 gi|282163776|ref|YP_003356161.1| - 0.0033 17.6 8.4 0.0033 17.6 8.4 3.2 2 2 2 4 4 4 1 Aromatic acid exporter family member 1 DUF1980 PF09323.10 gi|282163776|ref|YP_003356161.1| - 0.14 12.1 0.2 0.14 12.1 0.2 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF1980) CCG PF02754.16 gi|282163777|ref|YP_003356162.1| - 2.1e-33 114.4 1.8 1e-15 57.7 0.3 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_7 PF12838.7 gi|282163777|ref|YP_003356162.1| - 1.1e-07 32.4 9.4 1.1e-07 32.4 9.4 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282163777|ref|YP_003356162.1| - 2.7e-07 30.7 9.8 2.7e-07 30.7 9.8 3.2 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282163777|ref|YP_003356162.1| - 3.9e-07 30.1 16.0 5.9e-07 29.5 11.5 3.1 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282163777|ref|YP_003356162.1| - 1.7e-06 28.1 8.7 1.7e-06 28.1 8.7 2.7 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282163777|ref|YP_003356162.1| - 6.2e-06 26.6 10.4 6.2e-06 26.6 10.4 2.7 3 2 1 4 4 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282163777|ref|YP_003356162.1| - 6.2e-05 23.2 22.1 0.0083 16.6 2.4 4.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|282163777|ref|YP_003356162.1| - 9.7e-05 23.2 13.1 0.014 16.3 1.7 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|282163777|ref|YP_003356162.1| - 0.00011 22.7 22.1 0.00081 19.9 0.7 4.1 4 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282163777|ref|YP_003356162.1| - 0.00078 19.6 1.2 0.00078 19.6 1.2 2.8 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282163777|ref|YP_003356162.1| - 0.0014 18.4 5.2 0.0014 18.4 5.2 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|282163777|ref|YP_003356162.1| - 0.015 15.9 13.4 0.36 11.4 1.6 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|282163777|ref|YP_003356162.1| - 0.017 14.9 1.0 0.017 14.9 1.0 3.2 2 1 1 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.7 gi|282163777|ref|YP_003356162.1| - 0.024 14.7 4.4 0.024 14.7 4.4 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282163777|ref|YP_003356162.1| - 2.1 8.6 29.7 0.074 13.2 4.1 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain DAO PF01266.24 gi|282163778|ref|YP_003356163.1| - 3.7e-06 26.8 3.5 1.6e-05 24.7 3.5 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|282163778|ref|YP_003356163.1| - 0.00014 21.1 3.3 0.0011 18.1 1.2 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|282163778|ref|YP_003356163.1| - 0.06 12.6 2.2 1.7 7.8 1.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|282163778|ref|YP_003356163.1| - 0.1 12.9 2.0 0.3 11.3 2.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain KGG PF10685.9 gi|282163779|ref|YP_003356164.1| - 8.9e-07 29.0 5.1 0.0085 16.3 0.1 2.7 3 0 0 3 3 3 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282163779|ref|YP_003356164.1| - 5.1e-06 26.9 4.7 5.8e-06 26.7 4.7 1.1 1 0 0 1 1 1 1 Small hydrophilic plant seed protein UvdE PF03851.14 gi|282163780|ref|YP_003356165.1| - 3.2e-30 105.3 0.0 4.5e-30 104.8 0.0 1.1 1 0 0 1 1 1 1 UV-endonuclease UvdE Aminotran_1_2 PF00155.21 gi|282163783|ref|YP_003356168.1| - 1.5e-64 218.4 0.0 1.8e-64 218.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|282163783|ref|YP_003356168.1| - 1.1e-13 51.3 0.1 2.6e-13 50.0 0.1 1.6 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|282163783|ref|YP_003356168.1| - 1.6e-09 37.2 0.0 2.3e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|282163783|ref|YP_003356168.1| - 4.6e-08 32.0 0.0 6e-08 31.6 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|282163783|ref|YP_003356168.1| - 5.1e-05 22.7 0.0 7.9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DUF1611_N PF17396.2 gi|282163783|ref|YP_003356168.1| - 0.016 15.4 0.0 0.57 10.5 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain OKR_DC_1 PF01276.20 gi|282163783|ref|YP_003356168.1| - 0.045 12.5 0.0 0.075 11.7 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain DUF362 PF04015.12 gi|282163784|ref|YP_003356169.1| - 1.7e-50 172.1 0.1 2.2e-50 171.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|282163784|ref|YP_003356169.1| - 5e-07 29.3 25.3 0.00026 20.7 3.8 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282163784|ref|YP_003356169.1| - 2e-06 28.3 15.7 4.8e-06 27.1 15.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282163784|ref|YP_003356169.1| - 6.3e-05 23.0 11.9 0.00019 21.5 11.9 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282163784|ref|YP_003356169.1| - 6.4e-05 22.9 19.1 0.0049 16.9 4.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282163784|ref|YP_003356169.1| - 0.0003 20.7 19.0 0.037 14.1 6.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282163784|ref|YP_003356169.1| - 0.00033 20.8 13.7 0.005 17.0 0.9 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282163784|ref|YP_003356169.1| - 0.00039 20.9 10.3 0.024 15.2 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282163784|ref|YP_003356169.1| - 0.00058 19.9 17.4 0.0062 16.6 17.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Lar_N PF09861.9 gi|282163784|ref|YP_003356169.1| - 0.016 14.4 0.1 0.028 13.6 0.1 1.5 1 1 0 1 1 1 0 Lactate racemase N-terminal domain Fer4_16 PF13484.6 gi|282163784|ref|YP_003356169.1| - 0.068 14.1 5.4 0.068 14.1 5.4 2.7 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|282163784|ref|YP_003356169.1| - 0.23 11.9 18.4 9.1 6.8 7.1 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282163784|ref|YP_003356169.1| - 2.5 8.9 13.3 7.9 7.3 0.7 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|282163784|ref|YP_003356169.1| - 2.6 8.7 15.3 1.1 9.9 3.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Flavodoxin_5 PF12724.7 gi|282163785|ref|YP_003356170.1| - 2.8e-13 50.3 0.0 3.4e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|282163785|ref|YP_003356170.1| - 6.1e-06 26.0 0.0 7.3e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.15 gi|282163785|ref|YP_003356170.1| - 0.016 15.0 0.1 2.1 8.1 0.0 2.4 1 1 1 2 2 2 0 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.25 gi|282163785|ref|YP_003356170.1| - 0.073 13.3 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin RuBisCO_large PF00016.20 gi|282163786|ref|YP_003356171.1| - 1.3e-83 280.7 0.1 2.4e-83 279.8 0.1 1.4 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|282163786|ref|YP_003356171.1| - 1.7e-18 66.9 0.0 4.4e-18 65.6 0.0 1.7 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain PEP_mutase PF13714.6 gi|282163786|ref|YP_003356171.1| - 0.053 13.0 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase GARP PF16731.5 gi|282163786|ref|YP_003356171.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Glutamic acid/alanine-rich protein of Trypanosoma AAA_26 PF13500.6 gi|282163787|ref|YP_003356172.1| - 2.8e-41 141.5 0.0 4.8e-41 140.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.12 gi|282163787|ref|YP_003356172.1| - 4.7e-26 90.6 0.0 1e-25 89.5 0.0 1.6 1 0 0 1 1 1 1 DRTGG domain CbiA PF01656.23 gi|282163787|ref|YP_003356172.1| - 0.0028 17.7 0.0 0.02 15.0 0.0 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Hpr_kinase_N PF02603.16 gi|282163787|ref|YP_003356172.1| - 0.027 14.5 0.0 0.087 12.9 0.0 2.0 1 0 0 1 1 1 0 HPr Serine kinase N terminus ParA PF10609.9 gi|282163787|ref|YP_003356172.1| - 0.042 13.3 0.1 1.3 8.4 0.0 2.3 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase PucR PF07905.11 gi|282163787|ref|YP_003356172.1| - 0.15 12.4 0.3 3.8 7.8 0.2 2.7 2 1 0 2 2 2 0 Purine catabolism regulatory protein-like family Acetyltransf_1 PF00583.25 gi|282163788|ref|YP_003356173.1| - 7.5e-15 55.2 0.0 8.2e-15 55.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|282163788|ref|YP_003356173.1| - 1.2e-13 51.5 0.0 1.3e-13 51.4 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|282163788|ref|YP_003356173.1| - 3.6e-11 43.9 0.0 4.3e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|282163788|ref|YP_003356173.1| - 4.6e-11 43.0 0.0 6.4e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|282163788|ref|YP_003356173.1| - 2.5e-06 27.5 0.0 3.9e-06 26.8 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|282163788|ref|YP_003356173.1| - 1.3e-05 25.3 0.0 2.1e-05 24.6 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|282163788|ref|YP_003356173.1| - 0.00065 19.8 0.0 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|282163788|ref|YP_003356173.1| - 0.0027 17.7 0.0 0.0046 16.9 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_13 PF13880.6 gi|282163788|ref|YP_003356173.1| - 0.018 15.0 0.0 0.035 14.1 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase LPD23 PF18838.1 gi|282163788|ref|YP_003356173.1| - 0.15 11.8 0.1 0.29 10.9 0.1 1.4 1 0 0 1 1 1 0 Large polyvalent protein associated domain 23 Acetyltransf_8 PF13523.6 gi|282163788|ref|YP_003356173.1| - 0.16 11.6 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF2156 PF09924.9 gi|282163788|ref|YP_003356173.1| - 0.17 10.9 0.0 0.19 10.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) Acetyltransf_1 PF00583.25 gi|282163789|ref|YP_003356174.1| - 1.6e-16 60.6 0.0 1.9e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|282163789|ref|YP_003356174.1| - 1e-11 45.2 0.0 1.1e-11 45.1 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|282163789|ref|YP_003356174.1| - 1.3e-10 41.5 0.0 1.9e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|282163789|ref|YP_003356174.1| - 7.4e-09 36.4 0.0 8.4e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|282163789|ref|YP_003356174.1| - 4.5e-05 23.4 0.0 6.3e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|282163789|ref|YP_003356174.1| - 0.0015 18.4 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein GNAT_acetyltran PF12746.7 gi|282163789|ref|YP_003356174.1| - 0.0055 16.3 0.0 0.008 15.8 0.0 1.3 1 1 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_CG PF14542.6 gi|282163789|ref|YP_003356174.1| - 0.17 12.1 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase QRPTase_C PF01729.19 gi|282163790|ref|YP_003356175.1| - 5.6e-61 205.2 0.9 6.9e-61 204.9 0.9 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|282163790|ref|YP_003356175.1| - 4e-23 81.3 0.1 1.7e-22 79.3 0.0 2.0 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain TMP-TENI PF02581.17 gi|282163790|ref|YP_003356175.1| - 0.00024 20.5 0.4 0.00054 19.4 0.4 1.6 1 1 0 1 1 1 1 Thiamine monophosphate synthase Ribul_P_3_epim PF00834.19 gi|282163790|ref|YP_003356175.1| - 0.0047 16.3 1.3 0.024 14.0 0.1 2.1 1 1 1 2 2 2 1 Ribulose-phosphate 3 epimerase family DUF108 PF01958.18 gi|282163791|ref|YP_003356176.1| - 1.7e-33 114.8 1.0 3.3e-33 113.9 1.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|282163791|ref|YP_003356176.1| - 1.7e-26 93.1 0.7 1.7e-26 93.1 0.7 1.9 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|282163791|ref|YP_003356176.1| - 7.7e-08 32.8 1.3 1.6e-07 31.8 1.3 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|282163791|ref|YP_003356176.1| - 2.3e-07 31.7 0.4 1.4e-06 29.1 0.3 2.1 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|282163791|ref|YP_003356176.1| - 9.6e-07 29.0 0.2 2.1e-06 27.8 0.0 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Shikimate_DH PF01488.20 gi|282163791|ref|YP_003356176.1| - 2.6e-06 27.6 0.2 6.4e-06 26.3 0.2 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|282163791|ref|YP_003356176.1| - 5.2e-05 22.7 0.0 8.2e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|282163791|ref|YP_003356176.1| - 0.00045 20.6 0.1 0.00076 19.9 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|282163791|ref|YP_003356176.1| - 0.00046 20.2 0.1 0.00099 19.1 0.1 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Sacchrp_dh_NADP PF03435.18 gi|282163791|ref|YP_003356176.1| - 0.00063 20.0 1.4 0.0037 17.5 1.1 2.2 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Gp_dh_N PF00044.24 gi|282163791|ref|YP_003356176.1| - 0.0019 18.5 0.1 0.035 14.5 0.1 2.5 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|282163791|ref|YP_003356176.1| - 0.003 17.5 2.5 0.079 12.8 0.1 2.9 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|282163791|ref|YP_003356176.1| - 0.004 17.3 0.1 0.0058 16.8 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|282163791|ref|YP_003356176.1| - 0.0049 16.5 0.2 0.025 14.2 0.2 2.1 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|282163791|ref|YP_003356176.1| - 0.031 14.5 1.1 0.72 10.1 0.5 2.7 1 1 1 2 2 2 0 TrkA-N domain ThiF PF00899.21 gi|282163791|ref|YP_003356176.1| - 0.064 12.6 1.8 1.2 8.4 0.1 2.3 2 1 0 2 2 2 0 ThiF family PglD_N PF17836.1 gi|282163791|ref|YP_003356176.1| - 0.082 13.6 0.1 0.42 11.3 0.0 2.2 2 0 0 2 2 2 0 PglD N-terminal domain DUF5591 PF17884.1 gi|282163793|ref|YP_003356178.1| - 2.8e-16 59.8 0.2 4.5e-16 59.1 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) DUF508 PF04370.12 gi|282163793|ref|YP_003356178.1| - 0.054 13.2 0.1 0.08 12.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF508) Acetyltransf_1 PF00583.25 gi|282163794|ref|YP_003356179.1| - 4.3e-13 49.5 0.0 5.2e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|282163794|ref|YP_003356179.1| - 3.6e-11 43.1 0.0 4.4e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|282163794|ref|YP_003356179.1| - 1.7e-08 34.8 0.0 2.4e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|282163794|ref|YP_003356179.1| - 1.6e-06 28.0 0.0 2.3e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|282163794|ref|YP_003356179.1| - 0.00015 21.4 0.0 0.00041 20.0 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|282163794|ref|YP_003356179.1| - 0.00084 19.5 0.0 0.0011 19.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|282163794|ref|YP_003356179.1| - 0.0015 19.2 0.0 0.0018 19.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|282163794|ref|YP_003356179.1| - 0.038 14.1 0.0 0.073 13.2 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DNA_binding_1 PF01035.20 gi|282163795|ref|YP_003356180.1| - 3.4e-32 110.4 0.0 4.7e-32 110.0 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain WD40 PF00400.32 gi|282163797|ref|YP_003356182.1| - 8.3e-53 175.2 12.7 1.3e-09 38.5 0.0 7.2 7 0 0 7 7 7 7 WD domain, G-beta repeat ANAPC4_WD40 PF12894.7 gi|282163797|ref|YP_003356182.1| - 1.5e-16 60.4 0.0 0.0012 19.2 0.0 4.9 1 1 3 5 5 5 3 Anaphase-promoting complex subunit 4 WD40 domain Cytochrom_D1 PF02239.16 gi|282163797|ref|YP_003356182.1| - 6.3e-08 31.5 0.4 0.00016 20.4 0.0 2.2 2 0 0 2 2 2 2 Cytochrome D1 heme domain Nup160 PF11715.8 gi|282163797|ref|YP_003356182.1| - 7.2e-06 24.9 0.6 0.0064 15.2 0.0 4.0 3 2 2 5 5 5 1 Nucleoporin Nup120/160 eIF2A PF08662.11 gi|282163797|ref|YP_003356182.1| - 6.5e-05 22.9 0.0 0.00094 19.1 0.0 2.1 2 0 0 2 2 2 1 Eukaryotic translation initiation factor eIF2A PQQ_3 PF13570.6 gi|282163797|ref|YP_003356182.1| - 0.00012 22.4 6.7 1.1 9.8 0.3 5.4 5 0 0 5 5 5 1 PQQ-like domain WD40_like PF17005.5 gi|282163797|ref|YP_003356182.1| - 0.00015 21.2 0.0 0.011 15.1 0.0 3.2 1 1 0 2 2 2 1 WD40-like domain VID27 PF08553.10 gi|282163797|ref|YP_003356182.1| - 0.00033 19.8 0.1 0.36 9.8 0.0 2.3 2 0 0 2 2 2 2 VID27 C-terminal WD40-like domain SGL PF08450.12 gi|282163797|ref|YP_003356182.1| - 0.00045 19.9 0.8 0.072 12.7 0.1 2.9 3 0 0 3 3 3 1 SMP-30/Gluconolactonase/LRE-like region Ge1_WD40 PF16529.5 gi|282163797|ref|YP_003356182.1| - 0.0014 17.7 0.3 0.059 12.3 0.1 3.3 3 1 2 5 5 5 1 WD40 region of Ge1, enhancer of mRNA-decapping protein PD40 PF07676.12 gi|282163797|ref|YP_003356182.1| - 0.012 15.5 0.1 46 4.1 0.0 4.6 5 0 0 5 5 5 0 WD40-like Beta Propeller Repeat TrfA PF07042.11 gi|282163797|ref|YP_003356182.1| - 0.013 14.6 0.0 0.019 14.0 0.0 1.2 1 0 0 1 1 1 0 TrfA protein DUF4934 PF16288.5 gi|282163797|ref|YP_003356182.1| - 0.025 14.5 0.0 0.067 13.1 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4934) Nucleoporin_N PF08801.11 gi|282163797|ref|YP_003356182.1| - 0.25 10.0 0.0 15 4.2 0.0 2.5 2 1 1 3 3 3 0 Nup133 N terminal like Bacteriocin_IIi PF11758.8 gi|282163797|ref|YP_003356182.1| - 0.42 10.5 1.6 22 4.9 0.1 2.9 3 0 0 3 3 3 0 Aureocin-like type II bacteriocin Tautomerase PF01361.21 gi|282163798|ref|YP_003356183.1| - 3.6e-15 55.6 0.2 4.4e-15 55.3 0.2 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|282163798|ref|YP_003356183.1| - 5.5e-07 29.6 0.0 5.9e-07 29.5 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_3 PF14832.6 gi|282163798|ref|YP_003356183.1| - 2.3e-05 24.6 0.0 2.4e-05 24.6 0.0 1.0 1 0 0 1 1 1 1 Putative oxalocrotonate tautomerase enzyme Exo_endo_phos PF03372.23 gi|282163799|ref|YP_003356184.1| - 2.3e-26 92.7 0.0 2.7e-26 92.5 0.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|282163799|ref|YP_003356184.1| - 0.0021 17.9 0.0 0.0087 15.9 0.0 1.9 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase ASFV_L11L PF05293.11 gi|282163800|ref|YP_003356185.1| - 0.41 11.0 5.3 0.52 10.7 5.3 1.2 1 0 0 1 1 1 0 African swine fever virus (ASFV) L11L protein BTP PF05232.12 gi|282163800|ref|YP_003356185.1| - 0.89 9.7 9.9 0.072 13.2 2.7 2.1 1 1 1 2 2 2 0 Chlorhexidine efflux transporter EMP70 PF02990.16 gi|282163800|ref|YP_003356185.1| - 1.7 7.2 9.0 1.2 7.7 8.1 1.2 1 1 0 1 1 1 0 Endomembrane protein 70 MCH PF02289.16 gi|282163802|ref|YP_003356187.1| - 3.6e-129 430.5 0.4 4.1e-129 430.3 0.4 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) GCHY-1 PF02649.14 gi|282163803|ref|YP_003356188.1| - 3.5e-81 272.5 3.8 4e-81 272.4 3.8 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF4198 PF10670.9 gi|282163804|ref|YP_003356189.1| - 0.00037 20.9 0.1 0.00064 20.2 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) Trypan_PARP PF05887.11 gi|282163804|ref|YP_003356189.1| - 0.0005 20.1 2.9 0.00074 19.5 2.9 1.3 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) PT PF04886.12 gi|282163804|ref|YP_003356189.1| - 0.00054 19.4 29.3 0.00054 19.4 29.3 2.4 1 1 1 2 2 2 1 PT repeat DUF4366 PF14283.6 gi|282163804|ref|YP_003356189.1| - 0.28 11.2 2.1 1 9.4 2.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4366) HK PF02110.15 gi|282163805|ref|YP_003356190.1| - 1e-81 274.0 2.0 1.2e-81 273.8 2.0 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|282163805|ref|YP_003356190.1| - 6.3e-05 22.6 1.0 7.8e-05 22.3 1.0 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|282163805|ref|YP_003356190.1| - 0.0038 16.7 0.5 0.0063 15.9 0.5 1.3 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase TMP-TENI PF02581.17 gi|282163806|ref|YP_003356191.1| - 2.7e-61 206.1 0.3 3.4e-61 205.7 0.3 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|282163806|ref|YP_003356191.1| - 5.1e-06 26.1 2.3 6.3e-06 25.8 2.3 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase NanE PF04131.14 gi|282163806|ref|YP_003356191.1| - 0.00015 21.0 0.1 0.00025 20.3 0.1 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|282163806|ref|YP_003356191.1| - 0.00045 19.6 0.3 0.00089 18.6 0.3 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|282163806|ref|YP_003356191.1| - 0.011 14.9 0.9 0.025 13.8 0.3 1.8 3 0 0 3 3 3 0 Protein of unknown function (DUF561) FMN_dh PF01070.18 gi|282163806|ref|YP_003356191.1| - 0.095 11.7 0.7 1.8 7.5 0.1 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Exosortase_EpsH PF09721.10 gi|282163807|ref|YP_003356192.1| - 5.8e-11 42.4 16.9 5.8e-11 42.4 16.9 1.4 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) DUF192 PF02643.15 gi|282163808|ref|YP_003356193.1| - 4.2e-32 110.2 0.0 5.3e-32 109.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF1905 PF08922.11 gi|282163808|ref|YP_003356193.1| - 0.0036 17.3 0.0 0.011 15.8 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1905) DAO PF01266.24 gi|282163809|ref|YP_003356194.1| - 4e-43 148.3 1.5 5.1e-43 148.0 1.5 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|282163809|ref|YP_003356194.1| - 4.4e-05 22.8 2.4 0.0027 17.0 2.4 2.3 1 1 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 gi|282163809|ref|YP_003356194.1| - 5.3e-05 22.6 2.9 0.046 12.9 0.8 2.2 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|282163809|ref|YP_003356194.1| - 0.00011 22.1 0.1 0.0002 21.3 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|282163809|ref|YP_003356194.1| - 0.00074 18.7 5.0 0.0036 16.4 0.0 2.4 2 1 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|282163809|ref|YP_003356194.1| - 0.0015 18.7 0.8 0.0075 16.5 0.8 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|282163809|ref|YP_003356194.1| - 0.0074 15.9 0.4 0.021 14.5 0.2 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|282163809|ref|YP_003356194.1| - 0.011 16.3 0.8 0.24 12.0 1.3 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|282163809|ref|YP_003356194.1| - 0.016 15.2 3.1 0.77 9.7 0.1 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|282163809|ref|YP_003356194.1| - 0.037 13.1 3.4 0.056 12.5 3.4 1.6 1 1 0 1 1 1 0 FAD binding domain NAD_binding_7 PF13241.6 gi|282163809|ref|YP_003356194.1| - 0.054 13.9 0.2 0.36 11.3 0.1 2.4 2 1 0 2 2 2 0 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|282163809|ref|YP_003356194.1| - 0.087 12.1 4.2 0.055 12.7 2.3 1.5 2 0 0 2 2 2 0 FAD binding domain TrkA_N PF02254.18 gi|282163809|ref|YP_003356194.1| - 0.14 12.4 0.2 0.46 10.8 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain Trp_halogenase PF04820.14 gi|282163809|ref|YP_003356194.1| - 0.53 9.1 2.0 1 8.1 0.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase MC1 PF05854.11 gi|282163810|ref|YP_003356195.1| - 1.1e-34 118.6 0.6 1.5e-34 118.1 0.6 1.2 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 HTH_45 PF14947.6 gi|282163811|ref|YP_003356196.1| - 0.00063 19.7 0.2 0.00081 19.3 0.2 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix TFIIE_alpha PF02002.17 gi|282163811|ref|YP_003356196.1| - 0.018 14.9 0.1 0.02 14.8 0.1 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HOIP-UBA PF16678.5 gi|282163811|ref|YP_003356196.1| - 0.075 13.0 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 HOIP UBA domain pair HxlR PF01638.17 gi|282163811|ref|YP_003356196.1| - 0.075 12.9 0.1 0.2 11.5 0.1 1.8 1 1 0 1 1 1 0 HxlR-like helix-turn-helix Prominin PF05478.11 gi|282163811|ref|YP_003356196.1| - 0.15 10.0 0.0 0.15 10.0 0.0 1.0 1 0 0 1 1 1 0 Prominin HEAT_2 PF13646.6 gi|282163812|ref|YP_003356197.1| - 3.5e-15 56.1 3.6 2.4e-08 34.3 3.4 2.3 1 1 0 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|282163812|ref|YP_003356197.1| - 4.4e-08 33.1 10.7 0.001 19.6 2.8 4.6 4 1 0 4 4 4 3 PBS lyase HEAT-like repeat Aconitase_B_N PF11791.8 gi|282163812|ref|YP_003356197.1| - 0.01 15.9 0.7 0.47 10.5 0.1 2.5 2 0 0 2 2 2 0 Aconitate B N-terminal domain HEAT_EZ PF13513.6 gi|282163812|ref|YP_003356197.1| - 0.049 14.2 3.5 28 5.4 0.0 3.8 2 1 1 3 3 3 0 HEAT-like repeat HemY_N PF07219.13 gi|282163812|ref|YP_003356197.1| - 0.33 11.2 4.7 0.77 10.0 4.7 1.7 1 1 0 1 1 1 0 HemY protein N-terminus HEAT PF02985.22 gi|282163812|ref|YP_003356197.1| - 0.44 10.9 3.1 3.3 8.2 0.1 3.3 2 1 1 3 3 3 0 HEAT repeat DUF772 PF05598.11 gi|282163813|ref|YP_003356198.1| - 6.9e-05 22.8 0.1 9.7e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 Transposase domain (DUF772) DUF4024 PF13216.6 gi|282163813|ref|YP_003356198.1| - 2.5 8.1 5.5 3.5 7.7 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4024) Transposase_mut PF00872.18 gi|282163814|ref|YP_003356199.1| - 3.5e-104 348.7 0.0 4.3e-104 348.4 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family DDE_Tnp_ISL3 PF01610.17 gi|282163814|ref|YP_003356199.1| - 0.01 15.6 0.0 2.3 7.9 0.0 2.8 3 0 0 3 3 3 0 Transposase Ins_allergen_rp PF06757.13 gi|282163814|ref|YP_003356199.1| - 0.018 15.0 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification MULE PF10551.9 gi|282163814|ref|YP_003356199.1| - 0.021 15.2 0.1 0.12 12.8 0.0 2.1 2 0 0 2 2 2 0 MULE transposase domain DUF772 PF05598.11 gi|282163815|ref|YP_003356200.1| - 0.0071 16.3 0.1 0.013 15.5 0.0 1.5 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|282163816|ref|YP_003356201.1| - 8.7e-19 68.0 0.9 1e-18 67.8 0.9 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|282163816|ref|YP_003356201.1| - 3.6e-05 24.0 0.6 9.3e-05 22.6 0.3 1.7 2 0 0 2 2 2 1 Transposase DDE domain HTH_24 PF13412.6 gi|282163818|ref|YP_003356203.1| - 1.2e-12 47.2 1.9 2e-07 30.5 0.6 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding PQQ PF01011.21 gi|282163818|ref|YP_003356203.1| - 2.6e-07 30.2 12.7 0.0067 16.3 0.0 6.8 7 0 0 7 7 7 3 PQQ enzyme repeat HTH_5 PF01022.20 gi|282163818|ref|YP_003356203.1| - 3.5e-07 30.0 0.1 0.015 15.2 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family PQQ_2 PF13360.6 gi|282163818|ref|YP_003356203.1| - 3.9e-07 29.9 0.0 0.035 13.7 0.0 4.3 3 2 0 3 3 3 2 PQQ-like domain MarR PF01047.22 gi|282163818|ref|YP_003356203.1| - 1.6e-06 28.0 0.1 0.0044 16.9 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.10 gi|282163818|ref|YP_003356203.1| - 4.2e-06 26.5 0.0 0.068 13.0 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|282163818|ref|YP_003356203.1| - 6.7e-06 25.9 0.0 0.0016 18.3 0.0 2.3 2 0 0 2 2 2 1 MarR family PQQ_3 PF13570.6 gi|282163818|ref|YP_003356203.1| - 4.4e-05 23.8 3.3 0.03 14.8 0.0 6.1 9 0 0 9 9 7 1 PQQ-like domain HTH_20 PF12840.7 gi|282163818|ref|YP_003356203.1| - 0.00016 21.6 0.1 0.0062 16.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|282163818|ref|YP_003356203.1| - 0.0068 16.3 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|282163818|ref|YP_003356203.1| - 0.028 14.4 0.2 7.5 6.6 0.0 2.6 2 0 0 2 2 2 0 HTH domain Fe_dep_repress PF01325.19 gi|282163818|ref|YP_003356203.1| - 0.034 14.4 0.0 0.078 13.2 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RP-C PF03428.13 gi|282163818|ref|YP_003356203.1| - 0.18 11.5 0.0 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_Mga PF08280.11 gi|282163818|ref|YP_003356203.1| - 0.28 11.3 1.6 0.68 10.0 0.5 2.1 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain Glyoxalase PF00903.25 gi|282163820|ref|YP_003356205.1| - 2.8e-16 59.9 0.3 3.2e-16 59.7 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|282163820|ref|YP_003356205.1| - 2.6e-06 27.3 0.1 5.2e-06 26.4 0.1 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|282163820|ref|YP_003356205.1| - 0.0029 17.9 0.0 0.006 16.8 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|282163820|ref|YP_003356205.1| - 0.0048 17.7 0.0 0.0068 17.2 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain HAD_2 PF13419.6 gi|282163821|ref|YP_003356206.1| - 6.9e-25 88.1 0.0 8.6e-25 87.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|282163821|ref|YP_003356206.1| - 4e-12 46.9 0.0 2.3e-08 34.6 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|282163821|ref|YP_003356206.1| - 6.8e-07 29.3 0.0 1.2e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|282163821|ref|YP_003356206.1| - 0.00014 22.4 0.7 0.00064 20.2 0.7 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase CPBP PF02517.16 gi|282163822|ref|YP_003356207.1| - 2.8e-10 40.4 4.3 2.8e-10 40.4 4.3 3.3 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease Caveolin PF01146.17 gi|282163822|ref|YP_003356207.1| - 0.14 12.1 6.1 0.29 11.1 1.3 2.5 2 0 0 2 2 2 0 Caveolin GPI2 PF06432.11 gi|282163822|ref|YP_003356207.1| - 7.8 5.8 11.6 0.11 11.9 3.1 2.0 2 1 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase Transposase_mut PF00872.18 gi|282163823|ref|YP_003356208.1| - 2.8e-105 352.3 0.0 3.5e-105 352.0 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|282163823|ref|YP_003356208.1| - 1.2e-11 44.9 0.0 2.8e-11 43.7 0.0 1.6 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_IS66 PF03050.14 gi|282163823|ref|YP_003356208.1| - 6.1e-06 25.9 0.0 2.4e-05 24.0 0.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.6 gi|282163823|ref|YP_003356208.1| - 7.6e-06 26.2 0.0 0.026 14.7 0.0 2.6 2 0 0 2 2 2 2 DDE domain DDE_Tnp_ISL3 PF01610.17 gi|282163823|ref|YP_003356208.1| - 0.027 14.2 0.0 0.065 12.9 0.0 1.7 1 1 0 1 1 1 0 Transposase DUF3486 PF11985.8 gi|282163823|ref|YP_003356208.1| - 0.031 14.7 0.2 4 7.8 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3486) HTH_32 PF13565.6 gi|282163823|ref|YP_003356208.1| - 0.099 13.3 0.1 5.3 7.7 0.1 2.6 2 0 0 2 2 2 0 Homeodomain-like domain Phage_holin_3_6 PF07332.11 gi|282163824|ref|YP_003356209.1| - 0.0084 16.1 0.3 0.0096 15.9 0.3 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III BT1 PF03092.16 gi|282163824|ref|YP_003356209.1| - 0.0092 14.2 3.3 0.011 14.1 3.3 1.0 1 0 0 1 1 1 1 BT1 family DUF2254 PF10011.9 gi|282163824|ref|YP_003356209.1| - 0.04 12.8 0.6 0.044 12.6 0.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) DUF1772 PF08592.11 gi|282163824|ref|YP_003356209.1| - 0.054 13.8 0.1 0.06 13.7 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) DUF2207 PF09972.9 gi|282163824|ref|YP_003356209.1| - 0.11 11.2 8.2 0.12 11.1 8.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2070 PF09843.9 gi|282163824|ref|YP_003356209.1| - 0.42 8.9 4.6 0.47 8.7 4.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC2_membrane_3 PF12698.7 gi|282163824|ref|YP_003356209.1| - 3 6.8 10.8 3.6 6.6 10.8 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein CxxCxxCC PF03692.15 gi|282163825|ref|YP_003356210.1| - 1.9e-08 34.9 5.5 2.5e-08 34.5 4.4 1.8 2 0 0 2 2 2 1 Putative zinc- or iron-chelating domain Response_reg PF00072.24 gi|282163826|ref|YP_003356211.1| - 2e-22 79.5 0.2 2.2e-22 79.3 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Nre_C PF04895.12 gi|282163827|ref|YP_003356212.1| - 0.03 14.2 0.4 0.042 13.8 0.4 1.1 1 0 0 1 1 1 0 Archaeal Nre, C-terminal COMMD1_N PF17221.3 gi|282163827|ref|YP_003356212.1| - 0.07 13.4 0.4 0.09 13.1 0.4 1.3 1 1 0 1 1 1 0 COMMD1 N-terminal domain Adenylsucc_synt PF00709.21 gi|282163827|ref|YP_003356212.1| - 0.096 11.6 0.0 0.098 11.6 0.0 1.1 1 0 0 1 1 1 0 Adenylosuccinate synthetase TFX_C PF14601.6 gi|282163827|ref|YP_003356212.1| - 0.14 12.2 0.5 0.51 10.4 0.2 1.9 1 1 1 2 2 2 0 DNA_binding protein, TFX, C-term T2SSF PF00482.23 gi|282163827|ref|YP_003356212.1| - 0.17 11.9 0.1 0.18 11.7 0.1 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F PT PF04886.12 gi|282163828|ref|YP_003356213.1| - 3 7.5 9.4 2.6 7.7 2.0 3.2 2 1 0 2 2 2 0 PT repeat TP6A_N PF04406.14 gi|282163829|ref|YP_003356214.1| - 1.1e-13 50.9 0.0 2.1e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.11 gi|282163830|ref|YP_003356215.1| - 3e-61 205.9 0.0 5.2e-61 205.1 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|282163830|ref|YP_003356215.1| - 4.5e-10 40.0 0.0 9.2e-10 39.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|282163830|ref|YP_003356215.1| - 3.6e-08 33.3 0.0 7.8e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|282163830|ref|YP_003356215.1| - 0.018 15.0 0.1 0.32 11.0 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|282163830|ref|YP_003356215.1| - 0.15 12.0 0.0 0.42 10.6 0.0 1.7 1 0 0 1 1 1 0 GHKL domain NAD_binding_1 PF00175.21 gi|282163831|ref|YP_003356216.1| - 1.7e-20 73.7 0.0 3.5e-20 72.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|282163831|ref|YP_003356216.1| - 3.2e-10 40.3 0.0 4.8e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_8 PF08022.12 gi|282163831|ref|YP_003356216.1| - 2.2e-07 30.9 0.1 4.1e-07 30.0 0.1 1.5 1 0 0 1 1 1 1 FAD-binding domain NAD_binding_6 PF08030.12 gi|282163831|ref|YP_003356216.1| - 6.3e-05 23.1 0.0 0.0039 17.3 0.0 2.3 1 1 1 2 2 2 1 Ferric reductase NAD binding domain Methyltransf_11 PF08241.12 gi|282163832|ref|YP_003356217.1| - 3.4e-20 72.5 0.1 6.9e-20 71.5 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282163832|ref|YP_003356217.1| - 5.6e-19 68.6 0.0 1e-18 67.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282163832|ref|YP_003356217.1| - 1.6e-14 54.0 0.0 2.1e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282163832|ref|YP_003356217.1| - 7.8e-12 45.0 0.0 1.1e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|282163832|ref|YP_003356217.1| - 4e-09 36.5 0.0 9e-09 35.4 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|282163832|ref|YP_003356217.1| - 1.5e-08 35.3 0.0 2.4e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|282163832|ref|YP_003356217.1| - 5.9e-06 26.3 0.0 9.3e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|282163832|ref|YP_003356217.1| - 1.5e-05 24.5 0.0 1.9e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.6 gi|282163832|ref|YP_003356217.1| - 2.7e-05 25.1 0.0 0.0001 23.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282163832|ref|YP_003356217.1| - 4e-05 23.5 0.0 6.7e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|282163832|ref|YP_003356217.1| - 0.00059 19.9 0.0 0.00087 19.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|282163832|ref|YP_003356217.1| - 0.0006 19.0 0.0 0.00096 18.4 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase MTS PF05175.14 gi|282163832|ref|YP_003356217.1| - 0.00098 18.7 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.11 gi|282163832|ref|YP_003356217.1| - 0.0013 17.8 0.0 0.0028 16.6 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) Met_10 PF02475.16 gi|282163832|ref|YP_003356217.1| - 0.0016 18.2 0.0 0.0023 17.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MinC_C PF03775.16 gi|282163832|ref|YP_003356217.1| - 0.0081 16.1 0.1 0.012 15.5 0.1 1.2 1 0 0 1 1 1 1 Septum formation inhibitor MinC, C-terminal domain FtsJ PF01728.19 gi|282163832|ref|YP_003356217.1| - 0.0089 16.2 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase UPF0020 PF01170.18 gi|282163832|ref|YP_003356217.1| - 0.032 13.9 0.0 0.51 10.0 0.0 2.1 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_8 PF05148.15 gi|282163832|ref|YP_003356217.1| - 0.034 14.0 0.0 0.27 11.1 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase TrmK PF04816.12 gi|282163832|ref|YP_003356217.1| - 0.088 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase ACP_syn_III_C PF08541.10 gi|282163832|ref|YP_003356217.1| - 0.11 12.6 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Methyltransf_2 PF00891.18 gi|282163832|ref|YP_003356217.1| - 0.13 11.5 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain PrmA PF06325.13 gi|282163832|ref|YP_003356217.1| - 0.18 11.1 0.0 0.25 10.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF3795 PF12675.7 gi|282163833|ref|YP_003356218.1| - 8e-06 26.2 22.7 8.5e-06 26.1 15.6 3.0 2 1 0 2 2 2 1 Protein of unknown function (DUF3795) DZR PF12773.7 gi|282163833|ref|YP_003356218.1| - 0.18 11.8 22.5 0.24 11.4 2.7 3.3 1 1 2 3 3 3 0 Double zinc ribbon tRNA-synt_1g PF09334.11 gi|282163833|ref|YP_003356218.1| - 7 5.3 6.1 0.34 9.6 0.1 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (M) Fer4_12 PF13353.6 gi|282163834|ref|YP_003356219.1| - 7.4e-09 36.0 0.0 1.5e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|282163834|ref|YP_003356219.1| - 1.8e-06 28.4 2.3 1.8e-06 28.4 2.3 2.4 2 2 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|282163834|ref|YP_003356219.1| - 2.2e-06 27.8 0.0 7.4e-06 26.1 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|282163834|ref|YP_003356219.1| - 0.02 15.4 0.3 0.082 13.4 0.3 2.2 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain UbiA PF01040.18 gi|282163835|ref|YP_003356220.1| - 1.1e-06 28.2 6.3 1.3e-06 27.9 6.3 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family 7tm_3 PF00003.22 gi|282163835|ref|YP_003356220.1| - 0.00058 19.6 2.0 0.0015 18.3 2.0 1.6 1 1 0 1 1 1 1 7 transmembrane sweet-taste receptor of 3 GCPR TMEM208_SND2 PF05620.11 gi|282163835|ref|YP_003356220.1| - 0.0037 17.1 4.6 0.4 10.5 1.0 2.0 2 0 0 2 2 2 2 SRP-independent targeting protein 2/TMEM208 DUF4131 PF13567.6 gi|282163835|ref|YP_003356220.1| - 0.0059 16.3 1.2 0.0059 16.3 1.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4131) FA_desaturase PF00487.24 gi|282163835|ref|YP_003356220.1| - 0.015 15.1 0.6 0.015 15.1 0.6 2.0 1 1 1 2 2 2 0 Fatty acid desaturase Wzy_C PF04932.15 gi|282163835|ref|YP_003356220.1| - 0.019 14.6 1.6 0.019 14.6 1.6 2.0 1 1 1 2 2 2 0 O-Antigen ligase PhoR PF11808.8 gi|282163835|ref|YP_003356220.1| - 0.041 14.3 11.9 0.13 12.7 0.1 2.3 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR 7tm_1 PF00001.21 gi|282163835|ref|YP_003356220.1| - 0.11 11.8 0.0 0.11 11.8 0.0 2.6 1 1 1 3 3 3 0 7 transmembrane receptor (rhodopsin family) YwiC PF14256.6 gi|282163835|ref|YP_003356220.1| - 0.13 12.6 12.8 0.97 9.7 5.5 2.1 2 0 0 2 2 2 0 YwiC-like protein PetM PF08041.11 gi|282163835|ref|YP_003356220.1| - 0.27 10.8 8.7 1.5 8.4 0.1 3.2 3 0 0 3 3 3 0 PetM family of cytochrome b6f complex subunit 7 EXS PF03124.14 gi|282163835|ref|YP_003356220.1| - 0.31 10.3 8.3 0.45 9.8 7.7 1.5 1 1 0 1 1 1 0 EXS family Peptidase_M50B PF13398.6 gi|282163835|ref|YP_003356220.1| - 0.33 10.6 13.9 0.85 9.2 1.3 2.0 2 0 0 2 2 2 0 Peptidase M50B-like TMCO5 PF14992.6 gi|282163835|ref|YP_003356220.1| - 0.54 9.8 1.8 0.66 9.5 1.8 1.2 1 0 0 1 1 1 0 TMCO5 family AgrB PF04647.15 gi|282163835|ref|YP_003356220.1| - 0.76 9.1 13.5 10 5.4 13.5 2.1 1 1 0 1 1 1 0 Accessory gene regulator B PrgI PF12666.7 gi|282163835|ref|YP_003356220.1| - 1.2 9.9 12.3 4 8.2 0.5 2.1 2 0 0 2 2 2 0 PrgI family protein Gram_pos_anchor PF00746.21 gi|282163835|ref|YP_003356220.1| - 1.5 8.9 3.7 6 6.9 0.0 2.9 3 0 0 3 3 3 0 LPXTG cell wall anchor motif DUF3487 PF11990.8 gi|282163835|ref|YP_003356220.1| - 1.5 8.7 12.5 4.8 7.1 3.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) TMEM173 PF15009.6 gi|282163835|ref|YP_003356220.1| - 2 7.5 6.3 5.9 5.9 1.8 2.0 2 0 0 2 2 2 0 Transmembrane protein 173 PAP2_3 PF14378.6 gi|282163835|ref|YP_003356220.1| - 5.8 6.5 13.6 1.9 8.2 2.0 2.1 2 0 0 2 2 2 0 PAP2 superfamily DUF2085 PF09858.9 gi|282163835|ref|YP_003356220.1| - 6.2 7.4 11.1 15 6.1 0.6 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2085) DAGK_prokar PF01219.19 gi|282163835|ref|YP_003356220.1| - 9.4 6.1 13.2 4.3 7.2 1.4 2.2 2 0 0 2 2 2 0 Prokaryotic diacylglycerol kinase DUF4714 PF15833.5 gi|282163836|ref|YP_003356221.1| - 0.4 10.6 3.8 0.2 11.7 1.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4714) FAD_binding_3 PF01494.19 gi|282163838|ref|YP_003356223.1| - 6.4e-17 61.8 1.3 2.8e-14 53.1 0.6 3.0 2 1 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|282163838|ref|YP_003356223.1| - 7.3e-14 51.9 1.3 1e-13 51.5 1.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|282163838|ref|YP_003356223.1| - 9.6e-14 51.2 3.1 3.7e-13 49.3 0.5 2.6 2 1 0 2 2 2 1 Lycopene cyclase protein HI0933_like PF03486.14 gi|282163838|ref|YP_003356223.1| - 3.7e-09 35.8 1.9 1.8e-08 33.5 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.14 gi|282163838|ref|YP_003356223.1| - 3.7e-07 29.4 1.2 0.011 14.6 0.3 3.2 2 1 0 3 3 3 2 Tryptophan halogenase GIDA PF01134.22 gi|282163838|ref|YP_003356223.1| - 8.3e-07 28.4 0.2 1.1e-06 28.1 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|282163838|ref|YP_003356223.1| - 1.4e-06 27.6 2.8 5.2e-05 22.5 0.4 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|282163838|ref|YP_003356223.1| - 1.6e-06 28.0 3.8 0.0011 18.6 0.4 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|282163838|ref|YP_003356223.1| - 1.8e-06 27.4 8.3 1.2e-05 24.7 5.3 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|282163838|ref|YP_003356223.1| - 3.5e-06 26.4 0.3 1.1e-05 24.7 0.1 1.9 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|282163838|ref|YP_003356223.1| - 1.3e-05 25.4 0.1 5.9e-05 23.2 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|282163838|ref|YP_003356223.1| - 0.0011 19.5 1.0 0.063 13.8 0.1 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|282163838|ref|YP_003356223.1| - 0.0092 15.3 1.6 0.047 12.9 1.7 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase PTH2 PF01981.16 gi|282163839|ref|YP_003356224.1| - 1.3e-35 122.2 0.1 1.5e-35 122.0 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 MTP18 PF10558.9 gi|282163840|ref|YP_003356225.1| - 0.021 14.8 0.0 0.025 14.6 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial 18 KDa protein (MTP18) TruD PF01142.18 gi|282163841|ref|YP_003356226.1| - 3.8e-153 510.2 0.0 4.3e-153 510.0 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) MTH865 PF07747.11 gi|282163842|ref|YP_003356227.1| - 2.8e-21 75.1 0.0 3.4e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 MTH865-like family CBM_1 PF00734.18 gi|282163843|ref|YP_003356228.1| - 6.9 6.7 7.7 0.41 10.7 1.6 2.1 2 0 0 2 2 2 0 Fungal cellulose binding domain AAA_26 PF13500.6 gi|282163844|ref|YP_003356229.1| - 8.4e-34 117.1 0.0 2.2e-33 115.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain DRTGG PF07085.12 gi|282163844|ref|YP_003356229.1| - 6.8e-30 103.0 0.2 1.8e-29 101.6 0.1 1.8 2 0 0 2 2 2 1 DRTGG domain Hpr_kinase_N PF02603.16 gi|282163844|ref|YP_003356229.1| - 0.00077 19.5 0.0 0.018 15.0 0.0 2.5 2 0 0 2 2 2 1 HPr Serine kinase N terminus CbiA PF01656.23 gi|282163844|ref|YP_003356229.1| - 0.0056 16.7 0.6 1.8 8.7 0.0 2.5 2 0 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain SMC_Nse1 PF07574.13 gi|282163845|ref|YP_003356230.1| - 0.00062 19.7 0.3 0.00084 19.3 0.3 1.1 1 0 0 1 1 1 1 Nse1 non-SMC component of SMC5-6 complex Penicillinase_R PF03965.16 gi|282163845|ref|YP_003356230.1| - 0.012 15.9 0.7 0.047 14.0 0.1 2.0 1 1 1 2 2 2 0 Penicillinase repressor DUF2797 PF10977.8 gi|282163846|ref|YP_003356231.1| - 2.3e-28 99.6 0.0 1.9e-27 96.7 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) PK_C PF02887.16 gi|282163847|ref|YP_003356232.1| - 2.5e-13 50.3 1.3 3.4e-13 49.8 1.3 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain AP_endonuc_2 PF01261.24 gi|282163847|ref|YP_003356232.1| - 0.0013 18.2 0.2 0.0063 16.0 0.2 2.0 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel DFP PF04127.15 gi|282163847|ref|YP_003356232.1| - 0.025 14.4 0.2 0.041 13.7 0.2 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Hydrolase PF00702.26 gi|282163847|ref|YP_003356232.1| - 0.034 14.4 0.1 0.064 13.5 0.1 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase ASCH PF04266.14 gi|282163848|ref|YP_003356233.1| - 5e-26 91.4 0.0 6.6e-26 91.0 0.0 1.2 1 0 0 1 1 1 1 ASCH domain GAF_2 PF13185.6 gi|282163849|ref|YP_003356234.1| - 2.5e-23 82.9 0.0 5.2e-23 81.9 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|282163849|ref|YP_003356234.1| - 5e-20 72.1 0.0 1.2e-19 70.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|282163849|ref|YP_003356234.1| - 1.7e-17 63.5 0.0 2.7e-14 53.3 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|282163849|ref|YP_003356234.1| - 3.4e-17 62.5 0.4 3.2e-11 43.3 0.2 2.7 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|282163849|ref|YP_003356234.1| - 3.5e-14 53.0 0.3 1.7e-10 41.1 0.0 2.7 3 0 0 3 3 3 2 PAS fold GAF PF01590.26 gi|282163849|ref|YP_003356234.1| - 5.4e-12 46.5 0.0 1.3e-11 45.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS PF00989.25 gi|282163849|ref|YP_003356234.1| - 2.8e-11 43.4 0.0 2.6e-07 30.6 0.0 3.2 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|282163849|ref|YP_003356234.1| - 1.1e-08 34.9 0.1 1.4e-07 31.3 0.0 2.5 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.6 gi|282163849|ref|YP_003356234.1| - 5.3e-05 23.6 0.1 0.00031 21.1 0.0 2.3 3 1 0 3 3 3 1 GAF domain HATPase_c_2 PF13581.6 gi|282163849|ref|YP_003356234.1| - 0.0016 18.4 0.0 0.0062 16.5 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain ZNRF_3_ecto PF18212.1 gi|282163849|ref|YP_003356234.1| - 0.15 12.1 0.1 16 5.6 0.0 2.5 2 0 0 2 2 2 0 ZNRF-3 Ectodomain HATPase_c_5 PF14501.6 gi|282163849|ref|YP_003356234.1| - 0.19 11.7 0.0 0.45 10.4 0.0 1.6 1 0 0 1 1 1 0 GHKL domain TGT PF01702.18 gi|282163850|ref|YP_003356235.1| - 6.9e-82 275.4 0.0 9.1e-82 275.0 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|282163850|ref|YP_003356235.1| - 0.11 12.3 0.0 0.23 11.3 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF5591) Dus PF01207.17 gi|282163851|ref|YP_003356236.1| - 1.8e-13 50.2 0.1 2.7e-13 49.7 0.1 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|282163851|ref|YP_003356236.1| - 4.1e-07 29.7 0.3 1.5e-06 27.8 0.2 1.9 1 1 1 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|282163851|ref|YP_003356236.1| - 0.00046 19.3 0.2 0.00059 18.9 0.2 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain MinC_N PF05209.13 gi|282163851|ref|YP_003356236.1| - 0.021 14.8 0.2 0.17 11.8 0.2 2.4 1 1 1 2 2 2 0 Septum formation inhibitor MinC, N-terminal domain DNA_pol3_beta_3 PF02768.15 gi|282163851|ref|YP_003356236.1| - 0.026 14.3 0.1 2.3 8.1 0.1 2.5 3 0 0 3 3 3 0 DNA polymerase III beta subunit, C-terminal domain Oxidored_FMN PF00724.20 gi|282163851|ref|YP_003356236.1| - 0.036 13.3 0.1 0.071 12.4 0.0 1.6 2 0 0 2 2 2 0 NADH:flavin oxidoreductase / NADH oxidase family CitG PF01874.16 gi|282163852|ref|YP_003356237.1| - 1e-70 238.6 0.0 1.1e-70 238.5 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|282163853|ref|YP_003356238.1| - 4e-44 150.5 0.0 4.7e-44 150.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Putative_PNPOx PF01243.20 gi|282163853|ref|YP_003356238.1| - 0.0005 20.2 0.0 0.00099 19.2 0.0 1.5 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DDE_Tnp_1 PF01609.21 gi|282163854|ref|YP_003356239.1| - 1.8e-09 37.6 2.6 3.7e-09 36.5 2.6 1.5 1 1 0 1 1 1 1 Transposase DDE domain Vfa1 PF08432.10 gi|282163854|ref|YP_003356239.1| - 0.14 12.4 5.9 2.9 8.2 2.7 2.2 2 0 0 2 2 2 0 AAA-ATPase Vps4-associated protein 1 DUF2929 PF11151.8 gi|282163855|ref|YP_003356240.1| - 0.3 11.4 6.5 0.33 11.3 1.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2929) DUF5518 PF17647.1 gi|282163855|ref|YP_003356240.1| - 2 8.6 20.9 2.6 8.2 20.9 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5518) Gly-zipper_Omp PF13488.6 gi|282163855|ref|YP_003356240.1| - 3.1 7.9 15.1 1.4e+02 2.6 15.1 2.8 1 1 0 1 1 1 0 Glycine zipper Gly-zipper_OmpA PF13436.6 gi|282163855|ref|YP_003356240.1| - 5.1 7.0 14.3 1.1 9.1 0.6 2.8 2 1 0 2 2 2 0 Glycine-zipper domain Romo1 PF10247.9 gi|282163855|ref|YP_003356240.1| - 9 6.7 17.3 66 4.0 9.2 2.7 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 DUF116 PF01976.17 gi|282163856|ref|YP_003356241.1| - 1.5e-48 164.2 0.0 1.9e-48 163.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 FixS PF03597.15 gi|282163856|ref|YP_003356241.1| - 0.032 13.9 4.5 0.099 12.4 4.5 1.9 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type Ribosomal_L40e PF01020.17 gi|282163856|ref|YP_003356241.1| - 0.14 12.0 0.7 0.28 11.1 0.7 1.4 1 0 0 1 1 1 0 Ribosomal L40e family DUF1700 PF08006.11 gi|282163856|ref|YP_003356241.1| - 3.3 7.2 10.4 5.2 6.6 10.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) TPP_enzyme_C PF02775.21 gi|282163857|ref|YP_003356242.1| - 2e-28 99.1 0.4 3.8e-28 98.2 0.4 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|282163857|ref|YP_003356242.1| - 4.1e-12 46.3 0.3 1.3e-11 44.7 0.3 1.8 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.18 gi|282163857|ref|YP_003356242.1| - 4.1e-06 26.5 0.1 1.5e-05 24.7 0.0 2.0 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_21 PF14697.6 gi|282163857|ref|YP_003356242.1| - 0.0012 18.9 12.3 0.15 12.3 2.3 3.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282163857|ref|YP_003356242.1| - 0.0026 17.5 16.3 0.02 14.7 3.0 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Transketolase_C PF02780.20 gi|282163857|ref|YP_003356242.1| - 0.018 14.9 0.4 3.6 7.5 0.0 3.3 3 1 0 3 3 3 0 Transketolase, C-terminal domain Fer4_2 PF12797.7 gi|282163857|ref|YP_003356242.1| - 0.022 14.8 1.1 0.022 14.8 1.1 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282163857|ref|YP_003356242.1| - 0.023 14.8 15.2 0.56 10.4 15.6 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282163857|ref|YP_003356242.1| - 0.023 14.8 12.3 0.023 14.8 12.3 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282163857|ref|YP_003356242.1| - 0.024 14.8 2.9 2 8.7 6.6 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282163857|ref|YP_003356242.1| - 0.23 11.6 20.7 0.081 13.0 2.9 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282163857|ref|YP_003356242.1| - 8.2 7.1 12.4 10 6.7 2.6 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282163857|ref|YP_003356242.1| - 9 7.0 19.0 8.4 7.1 4.4 3.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain POR PF01558.18 gi|282163858|ref|YP_003356243.1| - 2.3e-38 132.1 0.2 2.6e-38 131.8 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase AMP-binding_C_2 PF14535.6 gi|282163859|ref|YP_003356244.1| - 1.4e-21 76.6 0.0 2.5e-21 75.8 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|282163859|ref|YP_003356244.1| - 6.4e-12 44.8 0.0 1.1e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|282163859|ref|YP_003356244.1| - 0.026 13.6 0.0 0.069 12.2 0.0 1.5 2 0 0 2 2 2 0 Acyl-protein synthetase, LuxE GH3 PF03321.13 gi|282163859|ref|YP_003356244.1| - 0.051 12.4 0.1 0.2 10.5 0.0 1.8 2 0 0 2 2 2 0 GH3 auxin-responsive promoter PK_C PF02887.16 gi|282163860|ref|YP_003356245.1| - 2.4e-11 43.9 0.1 3.4e-11 43.4 0.1 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain ACT PF01842.25 gi|282163861|ref|YP_003356246.1| - 1.6e-19 69.4 0.2 9.5e-09 34.9 0.2 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|282163861|ref|YP_003356246.1| - 4.6e-08 33.5 0.5 0.001 19.6 0.0 2.4 2 1 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|282163861|ref|YP_003356246.1| - 1.5e-06 27.9 0.3 0.063 13.1 0.1 2.6 2 1 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|282163861|ref|YP_003356246.1| - 0.0026 17.7 0.0 0.12 12.4 0.0 2.3 2 1 0 2 2 2 1 ACT domain ACT_5 PF13710.6 gi|282163861|ref|YP_003356246.1| - 0.028 14.2 0.0 1.3 8.9 0.0 2.2 2 0 0 2 2 2 0 ACT domain TxDE PF18711.1 gi|282163861|ref|YP_003356246.1| - 0.16 12.1 0.9 3.8 7.7 0.1 2.7 3 0 0 3 3 3 0 Toxoflavin-degrading enzyme AMP-binding_C_2 PF14535.6 gi|282163862|ref|YP_003356247.1| - 8.3e-33 112.6 0.8 2.7e-32 111.0 0.3 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|282163862|ref|YP_003356247.1| - 5.5e-15 54.9 0.3 1.4e-14 53.5 0.0 1.7 2 0 0 2 2 2 1 AMP-binding enzyme GH3 PF03321.13 gi|282163862|ref|YP_003356247.1| - 0.0012 17.8 0.0 1.1 8.1 0.0 2.3 2 0 0 2 2 2 2 GH3 auxin-responsive promoter LuxE PF04443.12 gi|282163862|ref|YP_003356247.1| - 0.0028 16.8 0.0 0.069 12.2 0.0 2.1 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE AMP-binding_C_2 PF14535.6 gi|282163863|ref|YP_003356248.1| - 1.1e-29 102.6 0.2 2.1e-29 101.7 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|282163863|ref|YP_003356248.1| - 5.2e-11 41.8 0.3 9e-10 37.7 0.3 2.0 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|282163863|ref|YP_003356248.1| - 0.03 13.2 0.0 0.25 10.2 0.0 2.0 2 0 0 2 2 2 0 GH3 auxin-responsive promoter ABC2_membrane_3 PF12698.7 gi|282163865|ref|YP_003356250.1| - 3.5e-51 174.3 33.2 4.2e-51 174.1 33.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|282163865|ref|YP_003356250.1| - 2e-31 109.1 23.2 2e-31 109.1 23.2 3.5 3 1 0 4 4 4 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|282163865|ref|YP_003356250.1| - 2.7e-13 49.8 19.4 4.4e-13 49.2 19.4 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|282163865|ref|YP_003356250.1| - 9.5e-07 28.5 9.0 9.5e-07 28.5 9.0 2.2 2 1 0 2 2 2 1 CcmB protein ABC_tran PF00005.27 gi|282163866|ref|YP_003356251.1| - 1.2e-29 103.6 0.0 2e-29 102.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163866|ref|YP_003356251.1| - 2.3e-11 44.1 0.6 5.1e-07 29.8 0.0 2.7 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|282163866|ref|YP_003356251.1| - 2.6e-05 24.1 0.1 0.026 14.2 0.0 2.2 1 1 1 2 2 2 2 AAA ATPase domain DUF4162 PF13732.6 gi|282163866|ref|YP_003356251.1| - 0.00014 22.5 0.0 0.00036 21.2 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|282163866|ref|YP_003356251.1| - 0.00016 22.3 0.1 0.00029 21.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|282163866|ref|YP_003356251.1| - 0.0064 16.9 0.3 0.086 13.3 0.2 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|282163866|ref|YP_003356251.1| - 0.0082 15.9 0.1 0.018 14.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|282163866|ref|YP_003356251.1| - 0.012 15.3 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|282163866|ref|YP_003356251.1| - 0.014 15.3 0.0 0.076 12.9 0.0 1.9 1 1 1 2 2 2 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|282163866|ref|YP_003356251.1| - 0.035 13.8 0.1 0.22 11.2 0.0 2.1 1 1 1 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|282163866|ref|YP_003356251.1| - 0.07 13.0 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase STPPase_N PF16891.5 gi|282163866|ref|YP_003356251.1| - 0.096 13.1 0.2 5.5 7.5 0.0 3.1 3 0 0 3 3 3 0 Serine-threonine protein phosphatase N-terminal domain SRP54 PF00448.22 gi|282163866|ref|YP_003356251.1| - 0.1 12.2 0.0 0.38 10.4 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PadR PF03551.14 gi|282163867|ref|YP_003356252.1| - 3.6e-21 74.9 0.0 4.9e-21 74.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF505 PF04458.12 gi|282163867|ref|YP_003356252.1| - 0.00013 20.5 0.0 0.00014 20.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) RTP PF02334.16 gi|282163867|ref|YP_003356252.1| - 0.00016 22.3 0.1 0.00025 21.7 0.1 1.2 1 0 0 1 1 1 1 Replication terminator protein DUF4364 PF14277.6 gi|282163867|ref|YP_003356252.1| - 0.0002 21.2 0.1 0.00028 20.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|282163867|ref|YP_003356252.1| - 0.00083 19.3 0.1 0.0017 18.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|282163867|ref|YP_003356252.1| - 0.0027 17.9 0.0 0.0046 17.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF3116 PF11313.8 gi|282163867|ref|YP_003356252.1| - 0.0035 17.2 0.1 0.0044 16.8 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3116) AphA_like PF14557.6 gi|282163867|ref|YP_003356252.1| - 0.0041 16.9 0.0 0.0042 16.8 0.0 1.0 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator HATPase_c PF02518.26 gi|282163868|ref|YP_003356253.1| - 3.6e-18 66.1 0.0 6.4e-18 65.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|282163868|ref|YP_003356253.1| - 1.3e-05 25.4 0.0 2.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|282163868|ref|YP_003356253.1| - 0.0013 18.7 0.0 0.0054 16.7 0.0 2.1 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|282163868|ref|YP_003356253.1| - 0.0058 16.5 0.0 0.015 15.2 0.0 1.8 1 1 0 1 1 1 1 GHKL domain PAS PF00989.25 gi|282163868|ref|YP_003356253.1| - 0.01 15.8 0.0 0.088 12.8 0.0 2.4 2 1 0 2 2 2 0 PAS fold HisKA PF00512.25 gi|282163868|ref|YP_003356253.1| - 0.076 13.1 0.0 0.22 11.6 0.0 1.8 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|282163868|ref|YP_003356253.1| - 0.12 12.7 0.0 6.6 7.0 0.0 3.0 2 1 1 3 3 3 0 PAS domain HTH_24 PF13412.6 gi|282163869|ref|YP_003356254.1| - 7.9e-23 79.8 0.0 1e-10 41.0 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|282163869|ref|YP_003356254.1| - 1.9e-09 37.3 0.0 9.3e-05 22.2 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|282163869|ref|YP_003356254.1| - 2.1e-09 37.3 0.0 0.00018 21.5 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain MarR PF01047.22 gi|282163869|ref|YP_003356254.1| - 1.7e-06 27.8 0.0 0.013 15.4 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.10 gi|282163869|ref|YP_003356254.1| - 8.3e-06 25.5 0.0 0.0098 15.7 0.0 2.3 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|282163869|ref|YP_003356254.1| - 4.8e-05 23.1 0.0 0.01 15.7 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|282163869|ref|YP_003356254.1| - 0.00037 20.3 0.0 0.055 13.3 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|282163869|ref|YP_003356254.1| - 0.0056 16.9 0.0 0.72 10.1 0.0 2.5 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain GerE PF00196.19 gi|282163869|ref|YP_003356254.1| - 0.0062 16.1 0.0 2.2 7.9 0.0 3.2 2 1 1 3 3 3 1 Bacterial regulatory proteins, luxR family HTH_34 PF13601.6 gi|282163869|ref|YP_003356254.1| - 0.007 16.5 0.0 0.019 15.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|282163869|ref|YP_003356254.1| - 0.012 15.6 0.0 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 HTH domain RPA_C PF08784.11 gi|282163869|ref|YP_003356254.1| - 0.026 15.2 0.1 4.1 8.1 0.0 2.3 2 0 0 2 2 2 0 Replication protein A C terminal Toxin-JAB1 PF15659.6 gi|282163869|ref|YP_003356254.1| - 0.026 14.8 0.6 0.083 13.2 0.1 1.9 1 1 0 2 2 2 0 JAB-like toxin 1 B-block_TFIIIC PF04182.12 gi|282163869|ref|YP_003356254.1| - 0.036 14.2 0.0 2 8.6 0.0 2.3 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_40 PF14493.6 gi|282163869|ref|YP_003356254.1| - 0.041 14.3 0.0 0.51 10.8 0.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain RNA_pol_Rpc34 PF05158.12 gi|282163869|ref|YP_003356254.1| - 0.08 12.3 0.2 1.8 7.8 0.0 2.0 1 1 1 2 2 2 0 RNA polymerase Rpc34 subunit HTH_Tnp_4 PF13613.6 gi|282163869|ref|YP_003356254.1| - 0.16 11.7 0.0 0.4 10.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DUF1921 PF09081.10 gi|282163870|ref|YP_003356255.1| - 0.16 12.3 0.0 0.38 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1921) ABC_tran PF00005.27 gi|282163871|ref|YP_003356256.1| - 5e-25 88.6 0.0 8.2e-25 87.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163871|ref|YP_003356256.1| - 1.7e-11 44.5 0.1 4.7e-08 33.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|282163871|ref|YP_003356256.1| - 0.0074 16.0 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SRP54 PF00448.22 gi|282163871|ref|YP_003356256.1| - 0.011 15.4 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|282163871|ref|YP_003356256.1| - 0.019 15.5 0.0 0.037 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|282163871|ref|YP_003356256.1| - 0.032 13.7 0.1 6.2 6.2 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282163871|ref|YP_003356256.1| - 0.11 12.3 0.1 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|282163871|ref|YP_003356256.1| - 0.14 12.6 0.1 0.78 10.2 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|282163871|ref|YP_003356256.1| - 0.18 11.3 0.0 0.38 10.2 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region ABC2_membrane_2 PF12679.7 gi|282163872|ref|YP_003356257.1| - 5.7e-44 150.5 19.2 6.8e-44 150.3 19.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|282163872|ref|YP_003356257.1| - 1.9e-07 31.2 18.2 1.9e-07 31.2 18.2 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|282163872|ref|YP_003356257.1| - 0.00055 19.5 17.6 0.00055 19.5 17.6 2.4 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|282163872|ref|YP_003356257.1| - 0.0017 17.8 22.6 0.0017 17.8 22.6 2.8 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|282163872|ref|YP_003356257.1| - 0.16 11.1 37.1 0.22 10.6 27.5 2.9 1 1 1 2 2 2 0 ABC-2 family transporter protein ETRAMP PF09716.10 gi|282163872|ref|YP_003356257.1| - 1.5 8.9 7.5 2.4 8.3 0.0 4.2 4 1 0 4 4 4 0 Malarial early transcribed membrane protein (ETRAMP) NPCBM_assoc PF10633.9 gi|282163873|ref|YP_003356258.1| - 1.2e-22 79.9 5.3 1.9e-15 56.9 2.0 3.7 3 0 0 3 3 3 3 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.8 gi|282163873|ref|YP_003356258.1| - 2.1e-05 24.7 0.8 0.7 10.1 0.0 3.6 2 1 2 4 4 4 2 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF4832 PF16116.5 gi|282163873|ref|YP_003356258.1| - 2.6e-05 24.2 0.3 0.00031 20.7 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4832) CARDB PF07705.11 gi|282163873|ref|YP_003356258.1| - 0.001 19.3 3.0 0.001 19.3 3.0 4.6 2 2 3 5 5 5 1 CARDB DUF11 PF01345.18 gi|282163873|ref|YP_003356258.1| - 0.0036 17.6 15.2 0.13 12.6 4.9 4.2 1 1 1 3 3 3 2 Domain of unknown function DUF11 Transglut_N PF00868.20 gi|282163873|ref|YP_003356258.1| - 0.053 13.9 2.0 7.3 7.0 0.1 3.4 3 1 0 3 3 3 0 Transglutaminase family fn3_5 PF06280.12 gi|282163873|ref|YP_003356258.1| - 0.086 13.5 9.0 28 5.5 0.3 4.8 3 2 0 3 3 3 0 Fn3-like domain CENP-C_C PF11699.8 gi|282163873|ref|YP_003356258.1| - 0.1 12.8 3.2 0.19 11.9 0.1 2.7 3 0 0 3 3 3 0 Mif2/CENP-C like fn3_6 PF17766.1 gi|282163873|ref|YP_003356258.1| - 0.18 12.0 4.9 0.33 11.2 0.6 3.2 2 1 1 3 3 3 0 Fibronectin type-III domain WD40 PF00400.32 gi|282163878|ref|YP_003356263.1| - 3.5e-39 132.1 1.0 8.4e-11 42.3 0.0 4.0 4 0 0 4 4 4 4 WD domain, G-beta repeat ANAPC4_WD40 PF12894.7 gi|282163878|ref|YP_003356263.1| - 4.1e-19 68.7 0.0 9e-05 22.7 0.0 4.0 1 1 3 4 4 4 4 Anaphase-promoting complex subunit 4 WD40 domain Ge1_WD40 PF16529.5 gi|282163878|ref|YP_003356263.1| - 1.5e-17 63.5 0.2 0.00012 21.1 0.0 4.0 1 1 3 4 4 4 4 WD40 region of Ge1, enhancer of mRNA-decapping protein Nup160 PF11715.8 gi|282163878|ref|YP_003356263.1| - 8.8e-11 41.1 0.3 0.0007 18.4 0.0 4.0 1 1 3 4 4 4 3 Nucleoporin Nup120/160 eIF2A PF08662.11 gi|282163878|ref|YP_003356263.1| - 2.5e-09 37.3 0.0 0.079 12.8 0.0 3.1 1 1 2 3 3 3 3 Eukaryotic translation initiation factor eIF2A PD40 PF07676.12 gi|282163878|ref|YP_003356263.1| - 1.9e-08 34.0 3.4 0.53 10.3 0.0 4.5 4 0 0 4 4 4 3 WD40-like Beta Propeller Repeat Nbas_N PF15492.6 gi|282163878|ref|YP_003356263.1| - 1.1e-06 28.3 0.1 0.048 13.0 0.0 3.8 1 1 3 4 4 4 2 Neuroblastoma-amplified sequence, N terminal Cytochrom_D1 PF02239.16 gi|282163878|ref|YP_003356263.1| - 1.1e-06 27.5 0.1 2.8e-05 22.8 0.1 2.6 1 1 2 3 3 3 2 Cytochrome D1 heme domain PQQ_2 PF13360.6 gi|282163878|ref|YP_003356263.1| - 1.1e-06 28.4 0.1 1.6e-06 27.9 0.1 1.3 1 0 0 1 1 1 1 PQQ-like domain DUF5046 PF16465.5 gi|282163878|ref|YP_003356263.1| - 4.5e-06 26.3 0.0 1.2 8.5 0.0 3.1 1 1 2 3 3 3 3 Domain of unknown function (DUF5046) PQQ PF01011.21 gi|282163878|ref|YP_003356263.1| - 3.8e-05 23.4 0.1 1.7 8.7 0.0 3.5 3 0 0 3 3 3 1 PQQ enzyme repeat Proteasome_A_N PF10584.9 gi|282163878|ref|YP_003356263.1| - 5.2e-05 22.8 4.0 17 5.2 0.0 5.9 6 0 0 6 6 6 0 Proteasome subunit A N-terminal signature Arena_nucleocap PF00843.17 gi|282163878|ref|YP_003356263.1| - 8.7e-05 21.6 0.1 0.63 8.9 0.0 3.0 1 1 2 3 3 3 2 Arenavirus nucleocapsid N-terminal domain FCP1_C PF09309.10 gi|282163878|ref|YP_003356263.1| - 0.0028 17.6 0.0 4.9 6.9 0.0 3.0 1 1 2 3 3 3 1 FCP1, C-terminal Hira PF07569.11 gi|282163878|ref|YP_003356263.1| - 0.0048 16.6 0.0 0.042 13.6 0.0 2.6 2 1 0 2 2 2 1 TUP1-like enhancer of split Utp8 PF10395.9 gi|282163878|ref|YP_003356263.1| - 0.0072 14.9 0.0 0.15 10.5 0.0 2.0 1 1 1 2 2 2 1 Utp8 family TGBp3 PF02495.17 gi|282163878|ref|YP_003356263.1| - 0.016 14.9 0.0 0.44 10.2 0.0 2.5 2 0 0 2 2 2 0 Triple gene block 3 WD40_like PF17005.5 gi|282163878|ref|YP_003356263.1| - 0.017 14.4 0.0 2.4 7.4 0.0 2.0 2 0 0 2 2 2 0 WD40-like domain DUF1513 PF07433.11 gi|282163878|ref|YP_003356263.1| - 0.031 13.4 0.0 0.52 9.3 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1513) DPPIV_N PF00930.21 gi|282163878|ref|YP_003356263.1| - 0.063 12.0 0.0 65 2.1 0.0 3.2 1 1 1 3 3 3 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Frtz PF11768.8 gi|282163878|ref|YP_003356263.1| - 0.079 11.3 0.0 7.1 4.8 0.0 2.4 1 1 2 3 3 3 0 WD repeat-containing and planar cell polarity effector protein Fritz DUF5570 PF17731.1 gi|282163878|ref|YP_003356263.1| - 0.088 12.9 0.3 8.2 6.5 0.0 2.9 1 1 2 3 3 3 0 Family of unknown function (DUF5570) Thymidylat_synt PF00303.19 gi|282163879|ref|YP_003356264.1| - 2e-11 43.6 0.4 2.3e-11 43.4 0.4 1.1 1 0 0 1 1 1 1 Thymidylate synthase HEAT_2 PF13646.6 gi|282163880|ref|YP_003356265.1| - 1.2e-66 221.1 36.1 1.5e-14 54.1 0.4 5.5 1 1 6 7 7 7 7 HEAT repeats HEAT PF02985.22 gi|282163880|ref|YP_003356265.1| - 6.6e-28 94.4 13.0 0.044 14.0 0.0 10.3 11 0 0 11 11 10 8 HEAT repeat HEAT_PBS PF03130.16 gi|282163880|ref|YP_003356265.1| - 1.3e-21 75.0 23.8 6e-05 23.3 0.2 9.7 11 0 0 11 11 10 5 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|282163880|ref|YP_003356265.1| - 1.2e-15 57.6 22.0 0.034 14.7 1.8 9.8 5 3 6 11 11 11 5 HEAT-like repeat Arm PF00514.23 gi|282163880|ref|YP_003356265.1| - 2.7e-15 55.8 1.4 1.4 9.0 0.0 9.6 8 2 3 11 11 11 4 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|282163880|ref|YP_003356265.1| - 2.8e-14 53.5 6.2 0.0017 18.4 0.1 6.6 2 2 4 6 6 6 6 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|282163880|ref|YP_003356265.1| - 3.9e-09 35.6 0.0 0.0082 14.7 0.0 4.1 1 1 3 4 4 4 3 Adaptin N terminal region Aconitase_B_N PF11791.8 gi|282163880|ref|YP_003356265.1| - 7.3e-06 26.1 0.2 0.17 11.9 0.0 4.6 3 2 0 4 4 4 1 Aconitate B N-terminal domain TIP120 PF08623.10 gi|282163880|ref|YP_003356265.1| - 0.00025 20.9 0.7 5.9 6.6 0.1 3.7 3 1 0 3 3 3 2 TATA-binding protein interacting (TIP20) ERAP1_C PF11838.8 gi|282163880|ref|YP_003356265.1| - 0.00055 19.6 0.1 0.0028 17.2 0.0 1.9 1 1 1 2 2 2 1 ERAP1-like C-terminal domain RasGEF_N_2 PF14663.6 gi|282163880|ref|YP_003356265.1| - 0.001 19.4 0.1 52 4.3 0.0 5.4 4 2 3 7 7 7 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain RTP1_C1 PF10363.9 gi|282163880|ref|YP_003356265.1| - 0.0016 18.6 0.0 0.28 11.4 0.0 3.5 1 1 0 2 2 2 1 Required for nuclear transport of RNA pol II C-terminus 1 CLASP_N PF12348.8 gi|282163880|ref|YP_003356265.1| - 0.042 13.4 0.1 14 5.1 0.0 3.8 2 1 1 4 4 4 0 CLASP N terminal Cohesin_HEAT PF12765.7 gi|282163880|ref|YP_003356265.1| - 0.16 12.3 8.9 9.7 6.6 0.0 4.8 5 0 0 5 5 5 0 HEAT repeat associated with sister chromatid cohesion PMSR PF01625.21 gi|282163881|ref|YP_003356266.1| - 5.8e-67 224.6 0.7 6.5e-67 224.5 0.7 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Vsr PF03852.15 gi|282163881|ref|YP_003356266.1| - 0.013 15.3 0.2 0.19 11.6 0.0 2.6 3 0 0 3 3 3 0 DNA mismatch endonuclease Vsr Cortexin PF11057.8 gi|282163882|ref|YP_003356267.1| - 0.008 16.0 0.4 0.009 15.8 0.4 1.1 1 0 0 1 1 1 1 Cortexin of kidney Sec34 PF04136.15 gi|282163883|ref|YP_003356268.1| - 0.00042 20.2 7.6 0.031 14.2 0.2 3.4 4 0 0 4 4 4 2 Sec34-like family Filament PF00038.21 gi|282163883|ref|YP_003356268.1| - 0.018 14.6 6.5 0.24 11.0 0.5 3.4 2 1 2 4 4 4 0 Intermediate filament protein DUF3080 PF11279.8 gi|282163883|ref|YP_003356268.1| - 0.018 14.3 1.4 1.5 8.0 0.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3080) Spc7 PF08317.11 gi|282163883|ref|YP_003356268.1| - 0.19 10.6 5.4 0.14 11.0 0.7 2.5 2 1 0 2 2 2 0 Spc7 kinetochore protein KinB_sensor PF16767.5 gi|282163883|ref|YP_003356268.1| - 1.5 9.3 4.3 7.1 7.1 0.1 3.5 1 1 1 3 3 3 0 Sensor domain of alginate biosynthesis sensor protein KinB BLOC1_2 PF10046.9 gi|282163883|ref|YP_003356268.1| - 2.4 8.5 15.5 1.3 9.4 1.2 4.4 5 1 1 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HAUS6_N PF14661.6 gi|282163883|ref|YP_003356268.1| - 5.4 6.5 7.8 1e+02 2.3 0.1 3.3 1 1 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus Beta-Casp PF10996.8 gi|282163884|ref|YP_003356269.1| - 1.3e-12 48.0 0.0 2.7e-12 47.0 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|282163884|ref|YP_003356269.1| - 1.4e-11 44.1 0.2 1.7e-10 40.7 0.0 2.4 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|282163884|ref|YP_003356269.1| - 1.4e-06 28.5 1.0 4.4e-05 23.6 1.0 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|282163884|ref|YP_003356269.1| - 4e-06 26.4 0.0 6.3e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|282163884|ref|YP_003356269.1| - 1.5e-05 24.6 0.1 3.6e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|282163884|ref|YP_003356269.1| - 0.0052 16.7 0.0 0.018 14.9 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RNA_pol_Rpb5_C PF01191.19 gi|282163885|ref|YP_003356270.1| - 2.1e-30 104.4 0.1 2.3e-30 104.3 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.15 gi|282163886|ref|YP_003356271.1| - 3.8e-53 180.0 0.1 4.6e-53 179.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 gi|282163886|ref|YP_003356271.1| - 4.9e-26 90.7 0.0 9.3e-26 89.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|282163886|ref|YP_003356271.1| - 1.6e-25 89.9 0.4 2.5e-25 89.2 0.4 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 DnaI_N PF07319.11 gi|282163886|ref|YP_003356271.1| - 0.063 14.0 0.0 0.15 12.8 0.0 1.6 1 0 0 1 1 1 0 Primosomal protein DnaI N-terminus Baculo_PEP_N PF04512.12 gi|282163886|ref|YP_003356271.1| - 0.16 12.2 0.0 5.8 7.2 0.0 2.7 3 0 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, N terminus RNA_pol_Rpb2_6 PF00562.28 gi|282163887|ref|YP_003356272.1| - 9e-127 423.4 0.0 1.2e-126 423.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|282163887|ref|YP_003356272.1| - 2.9e-30 104.5 0.1 4.9e-30 103.8 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|282163887|ref|YP_003356272.1| - 7.2e-21 74.2 1.0 1.5e-20 73.2 1.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|282163887|ref|YP_003356272.1| - 1.1e-09 38.7 0.0 2.6e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Zn-ribbon_8 PF09723.10 gi|282163887|ref|YP_003356272.1| - 0.00069 19.7 0.6 0.0014 18.7 0.6 1.4 1 0 0 1 1 1 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|282163887|ref|YP_003356272.1| - 0.0048 16.8 1.4 0.0098 15.8 1.4 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|282163887|ref|YP_003356272.1| - 0.007 15.7 1.0 0.93 9.0 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|282163887|ref|YP_003356272.1| - 0.018 15.2 0.2 0.037 14.2 0.2 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Auto_anti-p27 PF06677.12 gi|282163887|ref|YP_003356272.1| - 0.025 14.7 2.1 0.047 13.9 2.1 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) YflT PF11181.8 gi|282163887|ref|YP_003356272.1| - 0.05 14.1 1.5 6.5 7.3 0.0 3.1 2 1 1 3 3 3 0 Heat induced stress protein YflT A2L_zn_ribbon PF08792.10 gi|282163887|ref|YP_003356272.1| - 0.064 13.0 0.9 2.6 7.9 0.2 2.7 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF1451 PF07295.11 gi|282163887|ref|YP_003356272.1| - 0.24 11.4 0.4 0.45 10.5 0.4 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain zinc_ribbon_2 PF13240.6 gi|282163887|ref|YP_003356272.1| - 0.28 11.0 2.2 1.6 8.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|282163887|ref|YP_003356272.1| - 0.32 10.8 2.0 2.6 7.9 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|282163887|ref|YP_003356272.1| - 0.54 9.8 5.1 9.8 5.8 0.3 2.4 1 1 0 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|282163887|ref|YP_003356272.1| - 1.5 8.8 3.6 25 4.9 0.3 2.6 1 1 2 3 3 3 0 Nudix N-terminal zf-RING_7 PF02591.15 gi|282163887|ref|YP_003356272.1| - 2.7 8.2 5.2 1.3 9.3 0.3 2.7 2 1 1 3 3 3 0 C4-type zinc ribbon domain RNA_pol_Rpb1_1 PF04997.12 gi|282163888|ref|YP_003356273.1| - 9e-103 343.9 0.0 1.7e-102 342.9 0.0 1.5 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|282163888|ref|YP_003356273.1| - 9.6e-71 237.4 0.1 1.5e-70 236.7 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|282163888|ref|YP_003356273.1| - 7.4e-34 117.0 0.0 1.3e-33 116.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|282163888|ref|YP_003356273.1| - 7.7e-32 109.4 0.0 1.6e-31 108.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|282163888|ref|YP_003356273.1| - 1.7e-29 103.0 0.1 3.8e-29 101.9 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF2688 PF10892.8 gi|282163888|ref|YP_003356273.1| - 0.35 10.4 3.8 0.88 9.1 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2688) DZR PF12773.7 gi|282163888|ref|YP_003356273.1| - 8.9 6.4 8.9 17 5.5 0.2 3.2 3 0 0 3 3 3 0 Double zinc ribbon RNA_pol_Rpb1_5 PF04998.17 gi|282163889|ref|YP_003356274.1| - 6.9e-52 176.5 3.6 9.2e-52 176.1 3.6 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF4777 PF16007.5 gi|282163889|ref|YP_003356274.1| - 0.017 15.4 1.1 0.05 13.9 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4777) ATPgrasp_YheCD PF14398.6 gi|282163889|ref|YP_003356274.1| - 0.017 14.3 0.0 0.029 13.6 0.0 1.3 1 0 0 1 1 1 0 YheC/D like ATP-grasp NAC PF01849.18 gi|282163889|ref|YP_003356274.1| - 0.093 12.7 0.7 0.34 10.9 0.2 2.2 2 0 0 2 2 2 0 NAC domain DUF948 PF06103.11 gi|282163889|ref|YP_003356274.1| - 0.38 11.1 3.6 6.2 7.1 0.1 3.1 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) Ribosomal_L7Ae PF01248.26 gi|282163890|ref|YP_003356275.1| - 2.4e-17 62.4 0.0 3.1e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|282163891|ref|YP_003356276.1| - 2.8e-21 75.1 3.6 4.6e-13 48.8 0.2 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|282163891|ref|YP_003356276.1| - 2.1e-18 66.2 5.4 1.2e-16 60.5 1.4 2.2 2 0 0 2 2 2 2 NusA-like KH domain KH_4 PF13083.6 gi|282163891|ref|YP_003356276.1| - 1.6e-09 37.5 1.1 2.5e-05 24.1 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|282163891|ref|YP_003356276.1| - 4.9e-07 29.5 5.3 0.00012 21.9 0.9 2.3 1 1 1 2 2 2 2 KH domain ATP-synt PF00231.19 gi|282163891|ref|YP_003356276.1| - 0.02 14.7 0.3 2.5 7.7 0.1 2.0 1 1 1 2 2 2 0 ATP synthase Ribosom_S12_S23 PF00164.25 gi|282163892|ref|YP_003356277.1| - 1.1e-48 163.6 0.1 1.3e-48 163.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|282163893|ref|YP_003356278.1| - 3.3e-40 137.2 1.5 4e-40 136.9 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.27 gi|282163894|ref|YP_003356279.1| - 9e-63 211.3 0.0 1.5e-62 210.7 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|282163894|ref|YP_003356279.1| - 2.2e-25 88.8 0.1 2.2e-24 85.5 0.1 2.4 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|282163894|ref|YP_003356279.1| - 2.4e-24 85.2 3.6 1.2e-23 83.0 0.9 2.5 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|282163894|ref|YP_003356279.1| - 2.8e-23 81.8 0.1 1.1e-22 79.8 0.0 2.1 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|282163894|ref|YP_003356279.1| - 1.9e-12 47.4 0.9 6.2e-12 45.7 0.9 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|282163894|ref|YP_003356279.1| - 0.0003 20.9 0.0 0.00074 19.6 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|282163894|ref|YP_003356279.1| - 0.1 12.2 0.1 0.27 10.8 0.0 1.6 2 0 0 2 2 2 0 Ras family DUF2120 PF09893.9 gi|282163894|ref|YP_003356279.1| - 0.68 10.0 4.4 7.2 6.7 0.1 2.9 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2120) GTP_EFTU PF00009.27 gi|282163895|ref|YP_003356280.1| - 3.6e-57 193.0 0.3 5.2e-57 192.5 0.3 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|282163895|ref|YP_003356280.1| - 1e-39 135.3 0.1 2.8e-39 133.9 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|282163895|ref|YP_003356280.1| - 5.3e-14 52.4 2.3 1.7e-13 50.8 1.2 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|282163895|ref|YP_003356280.1| - 3.7e-06 27.0 0.0 8.4e-05 22.6 0.0 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase Gtr1_RagA PF04670.12 gi|282163895|ref|YP_003356280.1| - 0.00037 19.9 0.1 0.0087 15.4 0.1 2.1 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region FeoB_N PF02421.18 gi|282163895|ref|YP_003356280.1| - 0.016 14.7 0.1 0.34 10.4 0.1 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B Septin PF00735.18 gi|282163895|ref|YP_003356280.1| - 0.024 13.9 0.1 0.12 11.7 0.0 2.0 2 1 0 2 2 2 0 Septin Roc PF08477.13 gi|282163895|ref|YP_003356280.1| - 0.099 12.9 0.1 12 6.1 0.0 2.4 1 1 1 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|282163895|ref|YP_003356280.1| - 0.11 12.1 0.1 0.3 10.7 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU_D4 PF14578.6 gi|282163895|ref|YP_003356280.1| - 0.13 12.2 1.6 0.33 10.9 1.6 1.7 1 0 0 1 1 1 0 Elongation factor Tu domain 4 Ribosomal_S10 PF00338.22 gi|282163896|ref|YP_003356281.1| - 2.4e-27 95.0 0.0 2.6e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|282163896|ref|YP_003356281.1| - 0.015 16.1 0.0 0.03 15.1 0.0 1.5 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain MCR_alpha_N PF02745.15 gi|282163897|ref|YP_003356282.1| - 0.13 11.6 0.0 0.24 10.7 0.0 1.5 1 1 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, N-terminal domain DDE_Tnp_1 PF01609.21 gi|282163898|ref|YP_003356283.1| - 1.1e-10 41.5 4.2 5.6e-10 39.2 4.2 1.9 1 1 0 1 1 1 1 Transposase DDE domain Vfa1 PF08432.10 gi|282163898|ref|YP_003356283.1| - 0.06 13.7 6.4 7 6.9 5.0 2.2 2 0 0 2 2 2 0 AAA-ATPase Vps4-associated protein 1 TPR_1 PF00515.28 gi|282163899|ref|YP_003356284.1| - 3e-51 169.2 17.3 2.3e-10 39.8 0.0 7.1 6 1 1 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282163899|ref|YP_003356284.1| - 1.7e-44 146.3 14.9 8.2e-08 31.8 0.0 7.1 6 1 1 7 7 7 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282163899|ref|YP_003356284.1| - 1.6e-35 118.3 10.2 6.5e-06 26.0 0.0 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|282163899|ref|YP_003356284.1| - 2.8e-31 106.9 9.5 3.2e-09 36.3 1.2 6.2 3 2 3 6 6 6 5 TPR repeat TPR_16 PF13432.6 gi|282163899|ref|YP_003356284.1| - 6.9e-31 106.6 0.7 8.6e-11 42.3 0.1 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282163899|ref|YP_003356284.1| - 2.4e-30 102.7 10.7 2.3e-06 27.6 0.1 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282163899|ref|YP_003356284.1| - 2.8e-30 104.4 27.7 6.5e-09 36.0 0.6 5.8 2 1 4 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282163899|ref|YP_003356284.1| - 8.9e-30 103.0 11.2 4.1e-07 30.4 0.6 5.1 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282163899|ref|YP_003356284.1| - 3.5e-25 86.5 7.1 0.00014 22.4 0.0 7.0 1 1 6 7 7 7 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282163899|ref|YP_003356284.1| - 2.4e-24 83.5 4.1 0.0071 16.3 0.1 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282163899|ref|YP_003356284.1| - 5.8e-24 84.0 2.7 8.7e-11 41.8 0.1 4.5 1 1 4 5 5 5 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|282163899|ref|YP_003356284.1| - 4.1e-18 65.4 7.2 7.7e-12 45.3 0.6 3.8 2 1 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|282163899|ref|YP_003356284.1| - 1.4e-17 62.9 20.7 0.00049 19.9 0.2 7.1 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282163899|ref|YP_003356284.1| - 2e-15 56.3 6.9 0.12 13.0 0.1 6.9 7 0 0 7 7 7 4 Tetratricopeptide repeat NARP1 PF12569.8 gi|282163899|ref|YP_003356284.1| - 4e-12 45.8 0.0 2.7e-05 23.3 0.0 3.6 1 1 2 4 4 4 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|282163899|ref|YP_003356284.1| - 7.2e-11 42.0 8.0 0.14 12.2 0.1 6.0 4 1 2 6 6 6 3 Fis1 C-terminal tetratricopeptide repeat Coatomer_E PF04733.14 gi|282163899|ref|YP_003356284.1| - 6.3e-10 38.9 0.2 0.00095 18.7 0.1 3.9 2 1 2 4 4 4 2 Coatomer epsilon subunit TPR_15 PF13429.6 gi|282163899|ref|YP_003356284.1| - 1.1e-08 34.7 0.6 0.021 14.0 0.2 3.9 1 1 3 4 4 4 2 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|282163899|ref|YP_003356284.1| - 2.3e-07 30.8 0.1 0.0012 18.8 0.0 3.1 1 1 0 2 2 2 1 Putative TPR-like repeat HTH_Bact PF18768.1 gi|282163899|ref|YP_003356284.1| - 4.5e-06 26.1 2.1 0.0032 17.0 0.0 3.7 4 0 0 4 4 3 1 Helix-turn-helix bacterial domain DUF3856 PF12968.7 gi|282163899|ref|YP_003356284.1| - 1.7e-05 24.9 3.2 0.41 10.7 0.2 5.2 3 1 1 4 4 4 1 Domain of Unknown Function (DUF3856) TPR_4 PF07721.14 gi|282163899|ref|YP_003356284.1| - 3.7e-05 23.9 5.4 9.5 7.2 0.1 5.7 6 0 0 6 6 5 0 Tetratricopeptide repeat TPR_20 PF14561.6 gi|282163899|ref|YP_003356284.1| - 0.00016 22.0 0.3 1.7 9.0 0.0 3.4 3 1 1 4 4 3 2 Tetratricopeptide repeat DUF4919 PF16266.5 gi|282163899|ref|YP_003356284.1| - 0.00023 21.2 0.1 0.029 14.3 0.0 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4919) PPR PF01535.20 gi|282163899|ref|YP_003356284.1| - 0.00035 20.6 9.8 0.53 10.7 0.0 6.2 7 0 0 7 7 6 1 PPR repeat TOM20_plant PF06552.12 gi|282163899|ref|YP_003356284.1| - 0.0041 16.9 0.0 0.62 9.8 0.0 3.0 3 1 1 4 4 4 1 Plant specific mitochondrial import receptor subunit TOM20 Phage_tail_X PF05489.12 gi|282163899|ref|YP_003356284.1| - 0.0048 16.5 0.0 0.89 9.3 0.0 3.0 3 0 0 3 3 3 1 Phage Tail Protein X BTAD PF03704.17 gi|282163899|ref|YP_003356284.1| - 0.0049 17.3 7.6 0.24 11.8 0.4 3.3 2 2 0 3 3 3 1 Bacterial transcriptional activator domain SNAP PF14938.6 gi|282163899|ref|YP_003356284.1| - 0.0078 15.7 4.7 4.3 6.7 1.4 3.5 1 1 1 3 3 3 1 Soluble NSF attachment protein, SNAP DUF5113 PF17140.4 gi|282163899|ref|YP_003356284.1| - 0.0081 16.0 7.1 2.1 8.1 0.9 3.9 2 1 2 4 4 4 2 Domain of unknown function (DUF5113) TPR_MalT PF17874.1 gi|282163899|ref|YP_003356284.1| - 0.019 14.4 0.3 1.3 8.4 0.0 2.7 1 1 1 2 2 2 0 MalT-like TPR region Wzy_C_2 PF11846.8 gi|282163899|ref|YP_003356284.1| - 0.025 14.5 0.7 4.8 7.1 0.0 3.3 2 1 2 4 4 4 0 Virulence factor membrane-bound polymerase, C-terminal Rapsyn_N PF10579.9 gi|282163899|ref|YP_003356284.1| - 0.075 13.1 0.0 0.49 10.5 0.0 2.4 1 1 0 2 2 1 0 Rapsyn N-terminal myristoylation and linker region DUF627 PF04781.12 gi|282163899|ref|YP_003356284.1| - 0.078 13.0 0.0 12 5.9 0.0 3.6 1 1 3 4 4 4 0 Protein of unknown function (DUF627) DUF4192 PF13830.6 gi|282163899|ref|YP_003356284.1| - 0.12 12.4 0.0 0.35 10.9 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4192) ANAPC5 PF12862.7 gi|282163899|ref|YP_003356284.1| - 0.12 12.5 0.1 8 6.6 0.0 3.6 3 1 0 3 3 3 0 Anaphase-promoting complex subunit 5 Glyco_hydro_115 PF15979.5 gi|282163899|ref|YP_003356284.1| - 0.12 11.8 0.5 2.8 7.3 0.3 2.4 1 1 2 3 3 3 0 Glycosyl hydrolase family 115 MIT PF04212.18 gi|282163899|ref|YP_003356284.1| - 0.15 12.2 12.7 1.4 9.1 1.1 4.9 4 2 1 5 5 5 0 MIT (microtubule interacting and transport) domain DUF4810 PF16068.5 gi|282163899|ref|YP_003356284.1| - 0.21 12.1 1.7 55 4.4 0.0 3.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4810) Paf67 PF10255.9 gi|282163899|ref|YP_003356284.1| - 0.25 10.3 0.7 0.89 8.5 0.7 1.9 1 1 0 1 1 1 0 RNA polymerase I-associated factor PAF67 AAL_decarboxy PF03306.13 gi|282163900|ref|YP_003356285.1| - 9.9e-69 231.0 0.0 1.3e-68 230.7 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase Inhibitor_I42 PF09394.10 gi|282163902|ref|YP_003356287.1| - 7.2e-16 58.4 0.2 1.1e-15 57.7 0.2 1.3 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 MFS_1 PF07690.16 gi|282163905|ref|YP_003356290.1| - 4.4e-35 121.2 28.8 4.2e-34 118.0 25.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|282163905|ref|YP_003356290.1| - 3.9e-10 38.9 37.5 8.1e-08 31.2 21.3 2.6 1 1 2 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|282163905|ref|YP_003356290.1| - 3.9e-09 35.9 25.6 2.9e-07 29.7 9.8 2.1 1 1 1 2 2 2 2 MFS_1 like family UNC-93 PF05978.16 gi|282163905|ref|YP_003356290.1| - 0.001 18.8 4.6 0.001 18.8 4.6 3.3 2 1 1 3 3 3 1 Ion channel regulatory protein UNC-93 PIRT PF15099.6 gi|282163905|ref|YP_003356290.1| - 0.21 11.2 1.3 0.77 9.3 0.8 2.3 1 1 0 1 1 1 0 Phosphoinositide-interacting protein family OATP PF03137.20 gi|282163905|ref|YP_003356290.1| - 5.3 5.2 13.4 0.033 12.5 0.7 2.4 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family ABC2_membrane_2 PF12679.7 gi|282163906|ref|YP_003356291.1| - 1e-31 110.4 22.1 1.2e-31 110.0 22.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|282163906|ref|YP_003356291.1| - 8.3e-13 48.7 16.0 8.3e-13 48.7 16.0 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|282163906|ref|YP_003356291.1| - 1.9e-06 27.3 25.8 1.9e-06 27.3 25.8 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|282163906|ref|YP_003356291.1| - 4.1e-05 23.2 20.6 4.1e-05 23.2 20.6 2.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|282163907|ref|YP_003356292.1| - 4.2e-28 98.6 0.0 6.1e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163907|ref|YP_003356292.1| - 1.6e-11 44.6 0.5 8.3e-08 32.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|282163907|ref|YP_003356292.1| - 0.00012 22.7 0.0 0.00037 21.2 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) MMR_HSR1 PF01926.23 gi|282163907|ref|YP_003356292.1| - 0.017 15.2 0.0 0.038 14.1 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|282163907|ref|YP_003356292.1| - 0.027 13.9 0.0 4.9 6.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|282163907|ref|YP_003356292.1| - 0.042 14.4 0.1 0.073 13.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|282163907|ref|YP_003356292.1| - 0.047 13.6 0.1 0.087 12.7 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase Maff2 PF12750.7 gi|282163907|ref|YP_003356292.1| - 0.068 13.0 0.1 0.22 11.4 0.1 1.9 2 0 0 2 2 2 0 Maff2 family AAA_29 PF13555.6 gi|282163907|ref|YP_003356292.1| - 0.11 12.3 0.1 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|282163907|ref|YP_003356292.1| - 0.22 11.2 0.1 1.7 8.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain CarboxypepD_reg PF13620.6 gi|282163908|ref|YP_003356293.1| - 2.1e-06 27.9 0.7 2.1e-06 27.9 0.7 2.5 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain fn3_3 PF14686.6 gi|282163908|ref|YP_003356293.1| - 0.00066 19.4 0.8 0.0017 18.1 0.8 1.8 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II SdrD_B PF17210.3 gi|282163908|ref|YP_003356293.1| - 0.037 14.2 0.8 0.037 14.2 0.8 1.8 2 0 0 2 2 2 0 SdrD B-like domain TrbC PF04956.13 gi|282163908|ref|YP_003356293.1| - 1.8 8.8 8.0 1.6 9.0 2.2 2.4 2 0 0 2 2 2 0 TrbC/VIRB2 family PfkB PF00294.24 gi|282163909|ref|YP_003356294.1| - 4.2e-38 131.3 0.1 5e-38 131.1 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase ABC_tran PF00005.27 gi|282163910|ref|YP_003356295.1| - 3.8e-26 92.2 0.0 1.1e-25 90.7 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|282163910|ref|YP_003356295.1| - 1.2e-12 48.3 0.1 1e-07 32.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|282163910|ref|YP_003356295.1| - 7.5e-05 23.4 0.0 0.00018 22.2 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|282163910|ref|YP_003356295.1| - 0.0023 17.7 0.8 0.052 13.2 0.8 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|282163910|ref|YP_003356295.1| - 0.0068 16.9 1.8 0.011 16.3 0.8 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|282163910|ref|YP_003356295.1| - 0.023 14.4 0.1 0.045 13.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|282163910|ref|YP_003356295.1| - 0.054 13.8 0.1 0.27 11.5 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|282163910|ref|YP_003356295.1| - 0.055 13.1 0.0 0.13 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|282163910|ref|YP_003356295.1| - 0.15 12.4 0.0 0.26 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Flavi_DEAD PF07652.14 gi|282163910|ref|YP_003356295.1| - 0.18 11.7 0.3 0.91 9.5 0.1 2.0 1 1 1 2 2 2 0 Flavivirus DEAD domain ABC2_membrane_2 PF12679.7 gi|282163911|ref|YP_003356296.1| - 8.6e-18 64.6 19.3 1.2e-17 64.1 19.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|282163911|ref|YP_003356296.1| - 2.9e-09 36.5 22.5 3.4e-09 36.3 22.5 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|282163911|ref|YP_003356296.1| - 6.6e-06 25.8 20.0 1.2e-05 25.0 20.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|282163911|ref|YP_003356296.1| - 0.0022 18.0 11.0 0.0022 18.0 11.0 2.5 1 1 2 3 3 3 1 ABC-2 family transporter protein TrbC PF04956.13 gi|282163911|ref|YP_003356296.1| - 3.7 7.8 17.6 0.63 10.3 1.4 3.2 3 1 0 3 3 3 0 TrbC/VIRB2 family PDR_CDR PF06422.12 gi|282163911|ref|YP_003356296.1| - 7.5 6.5 11.7 0.4 10.6 0.4 3.3 2 1 0 3 3 3 0 CDR ABC transporter ABC_tran PF00005.27 gi|282163912|ref|YP_003356297.1| - 4.8e-25 88.7 0.0 8.3e-25 87.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163912|ref|YP_003356297.1| - 2.9e-14 53.6 0.0 2e-09 37.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|282163912|ref|YP_003356297.1| - 0.0011 18.8 0.0 0.28 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF4162 PF13732.6 gi|282163912|ref|YP_003356297.1| - 0.0015 19.2 0.0 0.0035 18.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|282163912|ref|YP_003356297.1| - 0.0064 17.0 1.5 0.012 16.1 1.5 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|282163912|ref|YP_003356297.1| - 0.025 14.3 0.1 0.047 13.4 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|282163912|ref|YP_003356297.1| - 0.037 14.3 0.1 0.59 10.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|282163912|ref|YP_003356297.1| - 0.057 13.8 0.0 0.12 12.7 0.0 1.7 2 1 0 2 2 2 0 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|282163912|ref|YP_003356297.1| - 0.09 11.7 0.1 0.15 10.9 0.1 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_27 PF13514.6 gi|282163912|ref|YP_003356297.1| - 0.098 12.2 0.0 0.23 11.0 0.0 1.5 2 0 0 2 2 2 0 AAA domain DUF881 PF05949.12 gi|282163912|ref|YP_003356297.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) RsgA_GTPase PF03193.16 gi|282163912|ref|YP_003356297.1| - 0.12 12.3 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase ABC2_membrane_2 PF12679.7 gi|282163913|ref|YP_003356298.1| - 8.1e-15 54.8 30.4 2e-14 53.6 30.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|282163913|ref|YP_003356298.1| - 0.00041 19.6 34.9 0.00069 18.8 29.7 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein CPSase_C PF18302.1 gi|282163913|ref|YP_003356298.1| - 0.0094 16.1 0.7 0.034 14.4 0.7 2.0 1 0 0 1 1 1 1 Carbamoyl phosphate synthetase C-terminal domain ABC2_membrane PF01061.24 gi|282163913|ref|YP_003356298.1| - 0.022 14.2 30.3 0.0077 15.7 26.4 2.2 1 1 0 1 1 1 0 ABC-2 type transporter DUF2448 PF10476.9 gi|282163913|ref|YP_003356298.1| - 0.3 10.9 2.5 0.68 9.8 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function C-terminus (DUF2448) ABC2_membrane_2 PF12679.7 gi|282163914|ref|YP_003356299.1| - 7.8e-16 58.2 24.3 1.1e-15 57.7 24.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|282163914|ref|YP_003356299.1| - 0.039 13.5 19.6 0.038 13.5 16.6 2.1 2 1 0 2 2 2 0 ABC-2 family transporter protein Phage_holin_2_1 PF04971.12 gi|282163914|ref|YP_003356299.1| - 0.042 13.9 0.1 0.24 11.4 0.1 2.3 1 0 0 1 1 1 0 Bacteriophage P21 holin S PDR_CDR PF06422.12 gi|282163914|ref|YP_003356299.1| - 2.2 8.2 6.9 17 5.4 0.1 3.1 3 0 0 3 3 3 0 CDR ABC transporter TrmB PF01978.19 gi|282163915|ref|YP_003356300.1| - 2.3e-18 65.9 0.8 4e-18 65.0 0.8 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|282163915|ref|YP_003356300.1| - 1.1e-05 24.7 0.0 2.6e-05 23.5 0.0 1.6 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB HTH_5 PF01022.20 gi|282163915|ref|YP_003356300.1| - 9.7e-05 22.2 0.0 0.00021 21.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|282163915|ref|YP_003356300.1| - 0.00012 22.2 0.2 0.0003 20.9 0.2 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|282163915|ref|YP_003356300.1| - 0.00022 21.6 0.0 0.0009 19.7 0.0 2.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|282163915|ref|YP_003356300.1| - 0.0016 18.3 0.0 0.0035 17.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|282163915|ref|YP_003356300.1| - 0.0021 17.8 0.0 0.005 16.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|282163915|ref|YP_003356300.1| - 0.0066 16.5 0.0 0.017 15.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.14 gi|282163915|ref|YP_003356300.1| - 0.011 15.6 0.2 0.08 12.9 0.1 2.4 3 0 0 3 3 3 0 Transcriptional regulator PadR-like family GntR PF00392.21 gi|282163915|ref|YP_003356300.1| - 0.014 15.0 0.2 0.038 13.7 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|282163915|ref|YP_003356300.1| - 0.037 14.0 0.0 0.08 12.9 0.0 1.6 1 0 0 1 1 1 0 MarR family dTDP_sugar_isom PF00908.17 gi|282163915|ref|YP_003356300.1| - 0.041 13.6 0.0 0.17 11.6 0.0 1.9 2 1 0 2 2 2 0 dTDP-4-dehydrorhamnose 3,5-epimerase HTH_24 PF13412.6 gi|282163915|ref|YP_003356300.1| - 0.058 13.0 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 gi|282163915|ref|YP_003356300.1| - 0.092 12.6 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain DUF150_C PF17384.2 gi|282163915|ref|YP_003356300.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 RimP C-terminal SH3 domain HTH_11 PF08279.12 gi|282163915|ref|YP_003356300.1| - 0.12 12.4 0.0 0.28 11.1 0.0 1.7 1 0 0 1 1 1 0 HTH domain Redoxin PF08534.10 gi|282163915|ref|YP_003356300.1| - 0.15 11.8 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Redoxin LCM PF04072.14 gi|282163916|ref|YP_003356301.1| - 2.1e-50 171.3 0.0 2.8e-50 170.9 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase MarR PF01047.22 gi|282163917|ref|YP_003356302.1| - 7.1e-13 48.3 0.1 1.7e-12 47.1 0.1 1.7 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|282163917|ref|YP_003356302.1| - 1.1e-08 34.8 0.1 1.8e-08 34.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|282163917|ref|YP_003356302.1| - 2.6e-07 31.0 0.1 5.4e-07 30.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|282163917|ref|YP_003356302.1| - 0.0011 18.5 0.3 0.0023 17.4 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|282163917|ref|YP_003356302.1| - 0.025 14.4 0.0 0.069 13.1 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|282163917|ref|YP_003356302.1| - 0.039 14.3 0.1 0.46 10.8 0.0 2.1 2 0 0 2 2 2 0 Penicillinase repressor HTH_11 PF08279.12 gi|282163917|ref|YP_003356302.1| - 0.049 13.6 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 HTH domain HxlR PF01638.17 gi|282163917|ref|YP_003356302.1| - 0.089 12.6 0.1 0.16 11.8 0.1 1.5 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_IclR PF09339.10 gi|282163917|ref|YP_003356302.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain CN_hydrolase PF00795.22 gi|282163918|ref|YP_003356303.1| - 5.7e-28 98.0 0.0 1.2e-27 96.9 0.0 1.5 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase DUF169 PF02596.15 gi|282163919|ref|YP_003356304.1| - 2.1e-38 132.3 0.0 2.4e-38 132.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 MCM PF00493.23 gi|282163920|ref|YP_003356305.1| - 1.6e-97 325.0 0.0 2.8e-97 324.2 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|282163920|ref|YP_003356305.1| - 2.7e-33 114.5 0.1 4.7e-33 113.7 0.1 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|282163920|ref|YP_003356305.1| - 7e-29 100.1 0.8 5.2e-28 97.3 0.8 2.3 2 0 0 2 2 2 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|282163920|ref|YP_003356305.1| - 2.2e-07 30.5 0.0 3.6e-05 23.3 0.0 2.6 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|282163920|ref|YP_003356305.1| - 6.1e-05 23.0 0.0 0.00013 22.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM_N PF14551.6 gi|282163920|ref|YP_003356305.1| - 7e-05 23.4 0.2 0.00027 21.5 0.0 2.0 2 0 0 2 2 2 1 MCM N-terminal domain Sigma54_activat PF00158.26 gi|282163920|ref|YP_003356305.1| - 0.0026 17.5 0.0 0.0091 15.7 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_3 PF07726.11 gi|282163920|ref|YP_003356305.1| - 0.0098 15.8 0.0 0.03 14.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|282163920|ref|YP_003356305.1| - 0.066 13.6 0.0 0.21 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain DUF424 PF04242.13 gi|282163921|ref|YP_003356306.1| - 2.2e-31 108.0 0.4 2.4e-31 107.9 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) HTH_24 PF13412.6 gi|282163922|ref|YP_003356307.1| - 5.5e-10 38.7 1.3 1e-09 37.8 0.6 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|282163922|ref|YP_003356307.1| - 4.1e-09 36.1 0.0 2.6e-08 33.5 0.1 2.4 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|282163922|ref|YP_003356307.1| - 1.7e-08 34.3 0.0 3.4e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_DeoR PF08220.12 gi|282163922|ref|YP_003356307.1| - 0.0015 18.2 0.1 0.0029 17.3 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|282163922|ref|YP_003356307.1| - 0.0018 18.2 0.1 0.004 17.1 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_Mga PF08280.11 gi|282163922|ref|YP_003356307.1| - 0.0022 18.0 0.1 0.0043 17.0 0.1 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Thioredoxin_6 PF13848.6 gi|282163922|ref|YP_003356307.1| - 0.0066 16.4 0.5 0.0096 15.9 0.5 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain AsnC_trans_reg2 PF17805.1 gi|282163922|ref|YP_003356307.1| - 0.0068 16.5 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_23 PF13384.6 gi|282163922|ref|YP_003356307.1| - 0.029 14.2 0.2 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain AAA PF00004.29 gi|282163923|ref|YP_003356308.1| - 3.1e-37 127.9 0.0 2.1e-36 125.2 0.0 2.4 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|282163923|ref|YP_003356308.1| - 1.3e-12 47.4 0.5 3e-12 46.1 0.5 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|282163923|ref|YP_003356308.1| - 5.6e-06 26.4 0.0 2.1e-05 24.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|282163923|ref|YP_003356308.1| - 0.00015 22.1 0.9 0.13 12.5 0.0 3.2 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|282163923|ref|YP_003356308.1| - 0.00068 20.0 0.3 0.043 14.2 0.0 2.6 2 1 0 3 3 3 1 AAA ATPase domain AAA_18 PF13238.6 gi|282163923|ref|YP_003356308.1| - 0.0017 18.9 0.1 0.0081 16.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|282163923|ref|YP_003356308.1| - 0.0025 17.0 0.3 0.019 14.1 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|282163923|ref|YP_003356308.1| - 0.0026 17.3 0.0 0.006 16.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region RuvB_N PF05496.12 gi|282163923|ref|YP_003356308.1| - 0.0049 16.6 0.0 0.015 15.1 0.0 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|282163923|ref|YP_003356308.1| - 0.0052 16.9 0.0 0.016 15.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF1441 PF07278.11 gi|282163923|ref|YP_003356308.1| - 0.0065 16.4 0.1 0.017 15.1 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1441) AAA_28 PF13521.6 gi|282163923|ref|YP_003356308.1| - 0.012 15.8 0.0 0.029 14.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|282163923|ref|YP_003356308.1| - 0.016 15.0 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|282163923|ref|YP_003356308.1| - 0.03 14.5 0.0 0.059 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|282163923|ref|YP_003356308.1| - 0.031 13.7 0.0 0.071 12.5 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|282163923|ref|YP_003356308.1| - 0.065 13.0 0.0 0.17 11.6 0.0 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein TIP49 PF06068.13 gi|282163923|ref|YP_003356308.1| - 0.091 11.9 0.0 0.22 10.7 0.0 1.6 1 1 0 1 1 1 0 TIP49 P-loop domain AAA_25 PF13481.6 gi|282163923|ref|YP_003356308.1| - 0.12 12.0 0.1 1.2 8.7 0.0 2.3 1 1 1 2 2 2 0 AAA domain Arc_PepC_II PF06847.11 gi|282163924|ref|YP_003356309.1| - 3.2e-27 94.9 0.2 5e-27 94.2 0.2 1.3 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|282163924|ref|YP_003356309.1| - 1.6e-09 38.1 13.6 4.3e-09 36.7 13.4 1.9 1 1 0 1 1 1 1 Type IV leader peptidase family 7TM_GPCR_Srab PF10292.9 gi|282163924|ref|YP_003356309.1| - 0.019 13.9 1.3 0.029 13.3 1.3 1.3 1 0 0 1 1 1 0 Serpentine type 7TM GPCR receptor class ab chemoreceptor Fer4 PF00037.27 gi|282163925|ref|YP_003356310.1| - 6.3e-11 41.6 24.2 3.2e-06 26.7 8.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282163925|ref|YP_003356310.1| - 3.4e-09 36.3 12.8 5.1e-05 23.1 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282163925|ref|YP_003356310.1| - 1.1e-08 34.7 23.7 2.9e-05 23.9 7.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282163925|ref|YP_003356310.1| - 1.6e-06 28.1 17.5 5.4e-06 26.5 17.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282163925|ref|YP_003356310.1| - 4.9e-06 27.0 15.9 0.0067 17.0 2.8 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282163925|ref|YP_003356310.1| - 5e-05 23.3 18.7 0.015 15.4 5.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282163925|ref|YP_003356310.1| - 7.8e-05 22.8 16.2 0.0033 17.5 2.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282163925|ref|YP_003356310.1| - 0.00052 20.9 18.8 0.076 14.0 3.5 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|282163925|ref|YP_003356310.1| - 0.0026 18.5 16.5 0.14 12.9 3.5 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|282163925|ref|YP_003356310.1| - 0.022 15.3 17.5 0.13 12.8 4.9 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|282163925|ref|YP_003356310.1| - 0.097 13.2 21.7 1.3 9.7 7.0 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|282163925|ref|YP_003356310.1| - 0.12 13.2 14.1 2.4 9.1 2.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282163925|ref|YP_003356310.1| - 0.35 11.4 18.0 1.5 9.4 5.8 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282163925|ref|YP_003356310.1| - 1.7 9.3 18.1 5 7.7 5.5 2.2 1 1 0 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|282163926|ref|YP_003356311.1| - 6.8e-37 127.2 0.2 7.8e-37 127.0 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.19 gi|282163927|ref|YP_003356312.1| - 5.1e-68 229.3 1.7 6.8e-68 228.8 1.7 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|282163927|ref|YP_003356312.1| - 1.4e-26 92.7 0.1 2.5e-26 91.9 0.1 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|282163927|ref|YP_003356312.1| - 1.8e-06 27.8 0.3 4.9e-06 26.4 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|282163927|ref|YP_003356312.1| - 0.0079 15.8 0.6 0.012 15.2 0.6 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|282163928|ref|YP_003356313.1| - 6.4e-24 84.5 0.4 2.3e-23 82.7 0.4 1.9 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YjeF_N PF03853.15 gi|282163928|ref|YP_003356313.1| - 0.078 12.9 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 YjeF-related protein N-terminus baeRF_family2 PF18844.1 gi|282163928|ref|YP_003356313.1| - 0.24 11.5 0.7 10 6.1 0.1 2.2 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 TPR_17 PF13431.6 gi|282163929|ref|YP_003356314.1| - 3.1e-14 52.2 0.5 5.9e-06 26.3 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|282163929|ref|YP_003356314.1| - 2.1e-10 40.1 3.0 0.019 14.6 0.0 3.8 3 1 1 4 4 4 3 TPR repeat TPR_16 PF13432.6 gi|282163929|ref|YP_003356314.1| - 4e-10 40.2 0.3 0.00035 21.2 0.1 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282163929|ref|YP_003356314.1| - 8.6e-10 38.0 6.5 0.00055 19.9 0.2 3.9 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282163929|ref|YP_003356314.1| - 3.1e-09 37.2 0.4 0.00021 21.8 0.1 2.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282163929|ref|YP_003356314.1| - 5.7e-07 29.8 1.5 0.067 14.0 0.0 3.6 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282163929|ref|YP_003356314.1| - 1.1e-06 28.9 6.0 0.001 19.3 0.2 3.2 2 2 1 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|282163929|ref|YP_003356314.1| - 5.3e-06 26.6 7.7 0.00071 19.8 0.6 2.0 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.6 gi|282163929|ref|YP_003356314.1| - 1.2e-05 25.1 3.9 1.7 9.1 0.1 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282163929|ref|YP_003356314.1| - 3.1e-05 23.6 8.3 0.0012 18.5 0.6 4.1 4 2 1 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282163929|ref|YP_003356314.1| - 0.00021 21.0 3.4 0.013 15.4 0.1 2.7 3 0 0 3 3 3 2 Tetratricopeptide repeat Mad3_BUB1_I PF08311.12 gi|282163929|ref|YP_003356314.1| - 0.00029 20.8 2.4 0.034 14.1 0.1 2.9 2 1 1 3 3 3 1 Mad3/BUB1 homology region 1 TPR_20 PF14561.6 gi|282163929|ref|YP_003356314.1| - 0.00032 21.0 0.2 0.0034 17.7 0.1 2.3 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|282163929|ref|YP_003356314.1| - 0.0044 16.3 0.1 0.024 13.8 0.1 1.8 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282163929|ref|YP_003356314.1| - 0.0072 16.3 2.4 0.032 14.3 0.1 2.7 2 1 0 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|282163929|ref|YP_003356314.1| - 0.011 14.7 0.2 0.055 12.4 0.1 1.8 1 1 1 2 2 2 0 NMDA receptor-regulated protein 1 SNAP PF14938.6 gi|282163929|ref|YP_003356314.1| - 0.17 11.3 3.6 0.2 11.1 0.3 2.0 1 1 1 2 2 2 0 Soluble NSF attachment protein, SNAP Glutaredoxin PF00462.24 gi|282163930|ref|YP_003356315.1| - 1.5e-11 44.3 0.0 2.2e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_2 PF13098.6 gi|282163930|ref|YP_003356315.1| - 1e-06 29.2 0.2 5.4e-06 26.8 0.2 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain DUF836 PF05768.14 gi|282163930|ref|YP_003356315.1| - 1.9e-05 25.0 0.0 2.1e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N_3 PF13417.6 gi|282163930|ref|YP_003356315.1| - 0.0031 17.9 0.0 0.0059 17.0 0.0 1.4 1 1 1 2 2 2 1 Glutathione S-transferase, N-terminal domain Thioredoxin_3 PF13192.6 gi|282163930|ref|YP_003356315.1| - 0.034 14.2 0.0 0.062 13.4 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin domain Thioredoxin PF00085.20 gi|282163930|ref|YP_003356315.1| - 0.042 13.8 0.1 0.058 13.4 0.1 1.3 1 1 0 1 1 1 0 Thioredoxin Ish1 PF10281.9 gi|282163930|ref|YP_003356315.1| - 0.064 13.6 0.4 0.19 12.0 0.1 1.9 2 1 0 2 2 2 0 Putative stress-responsive nuclear envelope protein B3_4 PF03483.17 gi|282163931|ref|YP_003356316.1| - 2.3e-31 108.8 0.0 3.6e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PfkB PF00294.24 gi|282163932|ref|YP_003356317.1| - 9.3e-53 179.5 0.0 1.2e-52 179.2 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|282163932|ref|YP_003356317.1| - 1.5e-06 27.8 0.0 3.8e-06 26.5 0.0 1.6 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase PhosphMutase PF10143.9 gi|282163933|ref|YP_003356318.1| - 2.8e-54 183.5 0.0 3.9e-54 183.1 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|282163933|ref|YP_003356318.1| - 5.4e-37 127.5 0.0 6.3e-37 127.3 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|282163933|ref|YP_003356318.1| - 0.00099 18.2 0.0 0.0015 17.6 0.0 1.2 1 0 0 1 1 1 1 Alkaline phosphatase E1-E2_ATPase PF00122.20 gi|282163934|ref|YP_003356319.1| - 8.5e-52 175.3 1.6 8.5e-52 175.3 1.6 3.2 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|282163934|ref|YP_003356319.1| - 4.1e-20 73.0 1.5 6.5e-20 72.3 1.5 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|282163934|ref|YP_003356319.1| - 3.4e-12 45.9 0.0 8.4e-12 44.6 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|282163934|ref|YP_003356319.1| - 0.0002 21.2 0.1 0.00073 19.3 0.1 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DAHP_snth_FXD PF18152.1 gi|282163934|ref|YP_003356319.1| - 0.0081 16.0 0.0 1.3 8.9 0.0 2.6 2 0 0 2 2 2 1 DAHP synthase ferredoxin-like domain GDE_N_bis PF14742.6 gi|282163935|ref|YP_003356320.1| - 4.2e-46 157.0 0.0 5.7e-46 156.5 0.0 1.2 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.14 gi|282163935|ref|YP_003356320.1| - 1.6e-12 47.1 0.0 3.6e-11 42.6 0.0 2.7 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Bac_rhamnosid6H PF17389.2 gi|282163935|ref|YP_003356320.1| - 0.0052 16.1 0.0 0.0082 15.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain PPDK_N PF01326.19 gi|282163936|ref|YP_003356321.1| - 2.8e-114 381.8 0.0 4.1e-114 381.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|282163936|ref|YP_003356321.1| - 1.6e-51 175.2 0.0 2.5e-51 174.5 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|282163936|ref|YP_003356321.1| - 8.3e-24 83.1 1.2 1.9e-23 82.0 0.6 2.0 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain 2-Hacid_dh_C PF02826.19 gi|282163937|ref|YP_003356322.1| - 2.2e-67 225.9 0.0 3.3e-67 225.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|282163937|ref|YP_003356322.1| - 3.4e-25 88.2 0.0 3.9e-25 88.0 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|282163937|ref|YP_003356322.1| - 5.7e-05 23.3 0.1 9.8e-05 22.6 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|282163937|ref|YP_003356322.1| - 0.0096 16.5 0.0 0.026 15.1 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|282163937|ref|YP_003356322.1| - 0.033 13.8 0.0 0.059 12.9 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain GFO_IDH_MocA PF01408.22 gi|282163937|ref|YP_003356322.1| - 0.073 13.9 0.0 0.14 13.0 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold PGK PF00162.19 gi|282163938|ref|YP_003356323.1| - 1.2e-151 505.0 0.0 1.3e-151 504.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase PFK PF00365.20 gi|282163939|ref|YP_003356324.1| - 1.9e-99 332.6 2.8 2.2e-99 332.4 2.8 1.0 1 0 0 1 1 1 1 Phosphofructokinase DAGK_cat PF00781.24 gi|282163939|ref|YP_003356324.1| - 0.0014 18.3 0.1 0.0038 16.8 0.1 1.8 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.21 gi|282163939|ref|YP_003356324.1| - 0.0033 16.7 1.2 0.0051 16.0 0.1 1.8 3 0 0 3 3 3 1 ATP-NAD kinase Gp138_N PF18352.1 gi|282163939|ref|YP_003356324.1| - 0.12 12.5 0.1 1.4 9.0 0.0 2.4 2 1 1 3 3 3 0 Phage protein Gp138 N-terminal domain Gp_dh_C PF02800.20 gi|282163940|ref|YP_003356325.1| - 4.4e-22 78.4 0.0 6.8e-22 77.8 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|282163940|ref|YP_003356325.1| - 3.2e-08 33.7 0.3 6.2e-08 32.8 0.3 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|282163940|ref|YP_003356325.1| - 4.8e-05 23.6 0.0 0.00015 22.1 0.0 1.9 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|282163940|ref|YP_003356325.1| - 0.0014 18.0 0.2 0.79 9.1 0.0 2.3 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|282163940|ref|YP_003356325.1| - 0.033 14.4 0.1 0.1 12.8 0.1 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain AdoHcyase_NAD PF00670.21 gi|282163940|ref|YP_003356325.1| - 0.069 13.2 0.5 0.15 12.2 0.5 1.6 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_3 PF03447.16 gi|282163940|ref|YP_003356325.1| - 0.15 12.7 0.1 0.48 11.1 0.1 1.9 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain DUF4203 PF13886.6 gi|282163941|ref|YP_003356326.1| - 0.0057 16.3 5.6 0.0067 16.1 5.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4203) Gly-zipper_YMGG PF13441.6 gi|282163941|ref|YP_003356326.1| - 1.6 8.5 10.6 4.9 7.0 10.6 1.8 1 1 0 1 1 1 0 YMGG-like Gly-zipper DUF308 PF03729.13 gi|282163942|ref|YP_003356327.1| - 1.3e-18 67.1 49.2 7.7e-10 39.0 15.8 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) E1-E2_ATPase PF00122.20 gi|282163944|ref|YP_003356329.1| - 3.4e-49 166.8 0.2 3.4e-49 166.8 0.2 4.4 4 1 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|282163944|ref|YP_003356329.1| - 6.7e-21 75.6 0.4 1.2e-20 74.7 0.4 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|282163944|ref|YP_003356329.1| - 8.7e-14 51.0 0.0 2.5e-13 49.5 0.0 1.9 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|282163944|ref|YP_003356329.1| - 0.00011 22.1 0.0 0.00029 20.6 0.1 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase PrsW-protease PF13367.6 gi|282163945|ref|YP_003356330.1| - 5.4e-40 137.0 13.4 5.4e-40 137.0 13.4 2.0 2 0 0 2 2 2 1 PrsW family intramembrane metalloprotease CAMP_factor PF07373.11 gi|282163946|ref|YP_003356331.1| - 0.011 15.3 0.5 0.017 14.8 0.5 1.2 1 0 0 1 1 1 0 CAMP factor (Cfa) CarbopepD_reg_2 PF13715.6 gi|282163947|ref|YP_003356332.1| - 0.0064 16.5 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 CarboxypepD_reg-like domain MarR_2 PF12802.7 gi|282163947|ref|YP_003356332.1| - 0.0089 15.9 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF2561 PF10812.8 gi|282163947|ref|YP_003356332.1| - 0.037 14.0 0.0 0.055 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2561) HTH_24 PF13412.6 gi|282163947|ref|YP_003356332.1| - 0.12 12.0 0.3 1.8 8.2 0.1 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding CPBP PF02517.16 gi|282163949|ref|YP_003356334.1| - 7e-13 48.8 23.3 1.1e-11 44.9 23.3 2.8 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease Rhodanese PF00581.20 gi|282163950|ref|YP_003356335.1| - 1.1e-22 80.6 0.0 4.5e-12 46.4 0.0 3.1 3 0 0 3 3 3 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|282163950|ref|YP_003356335.1| - 1.9e-07 31.3 2.0 5.7e-07 29.7 1.0 2.4 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Sulf_transp PF04143.14 gi|282163951|ref|YP_003356336.1| - 3.9e-15 56.2 5.5 3.9e-15 56.2 5.5 1.6 1 1 1 2 2 2 1 Sulphur transport DUF903 PF06004.12 gi|282163951|ref|YP_003356336.1| - 0.02 14.8 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF903) DUF2953 PF11167.8 gi|282163951|ref|YP_003356336.1| - 0.027 14.6 1.8 1.6 8.9 0.0 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF2953) Hyaluronidase_1 PF07212.11 gi|282163951|ref|YP_003356336.1| - 0.06 12.6 0.0 0.96 8.7 0.0 2.0 2 0 0 2 2 2 0 Hyaluronidase protein (HylP) Sulf_transp PF04143.14 gi|282163952|ref|YP_003356337.1| - 1.5e-19 70.7 8.4 1.7e-19 70.5 8.4 1.0 1 0 0 1 1 1 1 Sulphur transport Peptidase_S8 PF00082.22 gi|282163953|ref|YP_003356338.1| - 2.5e-54 184.6 13.9 3.8e-54 184.0 13.9 1.3 1 0 0 1 1 1 1 Subtilase family Glyco_hydro2_C5 PF18565.1 gi|282163953|ref|YP_003356338.1| - 0.01 15.6 0.3 0.028 14.3 0.3 1.8 1 0 0 1 1 1 0 Glycoside hydrolase family 2 C-terminal domain 5 Cupredoxin_1 PF13473.6 gi|282163954|ref|YP_003356339.1| - 3.8e-11 43.0 0.0 4.6e-11 42.8 0.0 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|282163954|ref|YP_003356339.1| - 1.3e-09 38.4 0.9 2.3e-07 31.2 0.9 2.1 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TBP PF00352.21 gi|282163955|ref|YP_003356340.1| - 2.9e-22 78.4 0.0 3.6e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) PAS_3 PF08447.12 gi|282163956|ref|YP_003356341.1| - 5.5e-55 183.6 0.2 1.1e-18 67.3 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|282163956|ref|YP_003356341.1| - 2.1e-41 140.4 0.3 5.2e-14 52.4 0.0 5.5 5 0 0 5 5 5 5 PAS domain PAS_4 PF08448.10 gi|282163956|ref|YP_003356341.1| - 3.8e-35 120.5 0.0 2.3e-13 50.4 0.0 6.2 6 1 0 6 6 6 4 PAS fold PAS PF00989.25 gi|282163956|ref|YP_003356341.1| - 2.5e-31 108.0 0.0 5.9e-12 45.6 0.0 6.1 5 1 0 5 5 5 5 PAS fold HATPase_c PF02518.26 gi|282163956|ref|YP_003356341.1| - 4.7e-19 69.0 0.0 1.4e-18 67.4 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|282163956|ref|YP_003356341.1| - 1.8e-13 50.2 0.0 0.0005 20.0 0.0 5.2 5 0 0 5 5 5 3 PAS domain PAS_10 PF13596.6 gi|282163956|ref|YP_003356341.1| - 3.6e-08 34.0 0.1 0.045 14.3 0.1 4.3 4 1 1 5 5 5 2 PAS domain HATPase_c_2 PF13581.6 gi|282163956|ref|YP_003356341.1| - 3.5e-06 27.0 0.0 1.8e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|282163956|ref|YP_003356341.1| - 4.1e-06 26.9 1.6 1.5 9.0 0.0 6.3 7 0 0 7 7 7 1 PAS fold PAS_11 PF14598.6 gi|282163956|ref|YP_003356341.1| - 0.00028 21.0 0.0 2.4 8.3 0.0 4.0 4 0 0 4 4 4 2 PAS domain HATPase_c_5 PF14501.6 gi|282163956|ref|YP_003356341.1| - 0.057 13.3 0.2 0.24 11.3 0.1 2.1 2 0 0 2 2 2 0 GHKL domain PAS_3 PF08447.12 gi|282163957|ref|YP_003356342.1| - 1.3e-40 137.6 0.2 7.4e-20 71.0 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|282163957|ref|YP_003356342.1| - 7.6e-20 71.5 0.1 1.6e-19 70.5 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|282163957|ref|YP_003356342.1| - 1.4e-16 60.7 0.0 3.5e-12 46.5 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|282163957|ref|YP_003356342.1| - 3.7e-16 59.1 0.0 1e-07 32.0 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|282163957|ref|YP_003356342.1| - 5.1e-11 42.7 0.0 3.4e-08 33.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|282163957|ref|YP_003356342.1| - 6.8e-06 26.0 0.0 0.045 13.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|282163957|ref|YP_003356342.1| - 1.5e-05 25.0 0.0 0.00036 20.5 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain dCache_1 PF02743.18 gi|282163957|ref|YP_003356342.1| - 0.0049 16.7 0.0 0.15 11.9 0.0 2.7 1 1 3 4 4 4 1 Cache domain PAS PF00989.25 gi|282163958|ref|YP_003356343.1| - 4.2e-50 168.5 0.7 9.4e-15 54.6 0.0 4.5 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|282163958|ref|YP_003356343.1| - 8.1e-49 164.2 0.1 4.2e-13 49.4 0.0 4.9 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.10 gi|282163958|ref|YP_003356343.1| - 7.7e-38 129.1 2.6 6.2e-10 39.3 0.0 4.6 5 0 0 5 5 5 4 PAS fold PAS_3 PF08447.12 gi|282163958|ref|YP_003356343.1| - 2e-33 114.5 0.3 1.2e-14 54.3 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.7 gi|282163958|ref|YP_003356343.1| - 1.1e-29 101.9 1.8 9e-08 32.0 0.0 4.6 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.26 gi|282163958|ref|YP_003356343.1| - 1.6e-18 67.3 0.0 3.9e-18 66.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|282163958|ref|YP_003356343.1| - 2.9e-08 33.9 3.1 0.0053 16.9 0.1 5.5 4 2 0 4 4 4 2 PAS fold PAS_10 PF13596.6 gi|282163958|ref|YP_003356343.1| - 2.4e-06 28.1 0.2 0.0091 16.6 0.0 3.4 3 0 0 3 3 2 2 PAS domain HATPase_c_2 PF13581.6 gi|282163958|ref|YP_003356343.1| - 0.00044 20.2 0.1 0.0011 18.9 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|282163958|ref|YP_003356343.1| - 0.0013 18.4 0.0 2.8 7.6 0.0 3.6 4 0 0 4 4 4 1 UPF0242 C-terminal PAS-like domain HATPase_c_5 PF14501.6 gi|282163958|ref|YP_003356343.1| - 0.0059 16.5 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_11 PF14598.6 gi|282163958|ref|YP_003356343.1| - 0.014 15.5 0.0 0.38 10.9 0.0 3.1 3 0 0 3 3 3 0 PAS domain HATPase_c_3 PF13589.6 gi|282163958|ref|YP_003356343.1| - 0.034 14.0 0.3 0.33 10.8 0.1 2.3 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HH_signal PF01085.18 gi|282163958|ref|YP_003356343.1| - 0.18 11.4 1.5 2.4 7.8 0.1 2.9 3 0 0 3 3 3 0 Hedgehog amino-terminal signalling domain HisKA PF00512.25 gi|282163958|ref|YP_003356343.1| - 0.91 9.6 3.1 1.6 8.8 0.2 3.0 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Anoctamin PF04547.12 gi|282163960|ref|YP_003356345.1| - 0.034 13.0 0.0 0.035 12.9 0.0 1.1 1 0 0 1 1 1 0 Calcium-activated chloride channel Peptidase_C8 PF03569.13 gi|282163960|ref|YP_003356345.1| - 0.12 11.9 0.2 0.18 11.4 0.2 1.3 1 0 0 1 1 1 0 Peptidase family C8 SNARE_assoc PF09335.11 gi|282163961|ref|YP_003356346.1| - 9e-26 90.7 6.4 9e-26 90.7 6.4 2.2 2 0 0 2 2 2 1 SNARE associated Golgi protein tRNA-synt_1e PF01406.19 gi|282163962|ref|YP_003356347.1| - 7.5e-132 439.2 0.0 9.7e-132 438.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|282163962|ref|YP_003356347.1| - 6.3e-18 64.7 0.3 1.6e-09 37.1 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|282163962|ref|YP_003356347.1| - 4.8e-13 48.2 0.1 9.6e-09 34.0 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.11 gi|282163962|ref|YP_003356347.1| - 1.6e-08 34.9 0.0 6.1e-08 33.0 0.0 1.9 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.18 gi|282163962|ref|YP_003356347.1| - 3.3e-08 32.9 0.0 4e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|282163962|ref|YP_003356347.1| - 0.0053 15.7 0.0 0.33 9.8 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1c PF00749.21 gi|282163962|ref|YP_003356347.1| - 0.094 11.6 1.1 0.27 10.1 0.0 2.1 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain Pyr_redox PF00070.27 gi|282163962|ref|YP_003356347.1| - 0.099 13.2 0.1 0.25 11.9 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TRAP_beta PF05753.14 gi|282163963|ref|YP_003356348.1| - 0.066 12.6 0.8 1.3 8.4 0.0 2.5 2 1 1 3 3 3 0 Translocon-associated protein beta (TRAPB) TPR_12 PF13424.6 gi|282163964|ref|YP_003356349.1| - 3.2e-14 53.0 3.7 5.4e-13 49.0 1.1 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282163964|ref|YP_003356349.1| - 2.2e-06 27.4 4.8 0.0041 17.1 0.1 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282163964|ref|YP_003356349.1| - 2.3e-05 24.1 1.3 0.14 12.3 0.0 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282163964|ref|YP_003356349.1| - 5.3e-05 22.9 1.0 0.00083 19.2 0.0 2.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282163964|ref|YP_003356349.1| - 0.00048 20.1 0.1 0.0029 17.7 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282163964|ref|YP_003356349.1| - 0.00089 19.0 1.7 0.0062 16.3 0.0 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282163964|ref|YP_003356349.1| - 0.0016 19.0 2.6 0.06 14.0 0.5 3.2 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282163964|ref|YP_003356349.1| - 0.0047 17.6 2.4 25 6.0 0.0 3.7 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|282163964|ref|YP_003356349.1| - 0.0095 15.3 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 MalT-like TPR region SNAP PF14938.6 gi|282163964|ref|YP_003356349.1| - 0.03 13.8 0.6 0.044 13.2 0.6 1.2 1 0 0 1 1 1 0 Soluble NSF attachment protein, SNAP TPR_19 PF14559.6 gi|282163964|ref|YP_003356349.1| - 0.065 13.7 2.3 0.18 12.3 0.8 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|282163964|ref|YP_003356349.1| - 0.083 12.4 1.4 28 4.2 0.0 3.3 3 0 0 3 3 3 0 SHNi-TPR Coatomer_E PF04733.14 gi|282163964|ref|YP_003356349.1| - 0.12 11.7 0.1 0.21 10.9 0.1 1.3 1 0 0 1 1 1 0 Coatomer epsilon subunit F420_ligase PF01996.16 gi|282163967|ref|YP_003356352.1| - 3.9e-58 196.7 0.5 5.2e-58 196.3 0.5 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase DUF4130 PF13566.6 gi|282163968|ref|YP_003356353.1| - 2.5e-13 50.3 0.3 5.1e-13 49.3 0.2 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4130 HHH_3 PF12836.7 gi|282163969|ref|YP_003356354.1| - 2.3e-07 31.0 0.0 4.6e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Radical_SAM PF04055.21 gi|282163969|ref|YP_003356354.1| - 2.5e-07 31.2 0.5 0.00052 20.4 0.3 2.7 2 1 1 3 3 3 2 Radical SAM superfamily HHH PF00633.23 gi|282163969|ref|YP_003356354.1| - 4.8e-05 23.0 0.0 9.4e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|282163969|ref|YP_003356354.1| - 0.00023 21.7 0.0 0.00051 20.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain PsbU PF06514.11 gi|282163969|ref|YP_003356354.1| - 0.014 15.3 0.0 0.038 14.0 0.0 1.7 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_2 PF12826.7 gi|282163969|ref|YP_003356354.1| - 0.087 12.9 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif ABC_tran PF00005.27 gi|282163970|ref|YP_003356355.1| - 6.6e-29 101.2 0.0 1e-28 100.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282163970|ref|YP_003356355.1| - 2.3e-13 50.6 0.1 1.8e-06 28.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|282163970|ref|YP_003356355.1| - 1.2e-05 25.9 0.1 2e-05 25.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|282163970|ref|YP_003356355.1| - 0.00027 20.8 0.0 0.049 13.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|282163970|ref|YP_003356355.1| - 0.003 18.0 0.0 0.0058 17.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|282163970|ref|YP_003356355.1| - 0.005 17.0 0.0 0.067 13.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|282163970|ref|YP_003356355.1| - 0.012 15.4 0.1 0.027 14.2 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|282163970|ref|YP_003356355.1| - 0.026 14.0 0.0 0.26 10.7 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|282163970|ref|YP_003356355.1| - 0.045 13.5 0.3 0.097 12.4 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|282163970|ref|YP_003356355.1| - 0.095 13.0 0.0 0.22 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|282163970|ref|YP_003356355.1| - 0.098 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|282163970|ref|YP_003356355.1| - 0.18 10.4 0.0 0.24 10.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain BofA PF07441.11 gi|282163972|ref|YP_003356357.1| - 1.2e-12 47.9 18.3 1.6e-12 47.5 18.3 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA DUF5381 PF17353.2 gi|282163972|ref|YP_003356357.1| - 2.1 8.1 9.0 2.3 8.0 9.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5381) DNA_pol_B PF00136.21 gi|282163973|ref|YP_003356358.1| - 5.8e-69 233.0 0.0 9.2e-69 232.3 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|282163973|ref|YP_003356358.1| - 2.2e-38 132.2 0.0 1.7e-36 126.0 0.0 2.6 2 1 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|282163973|ref|YP_003356358.1| - 2e-10 40.9 0.0 3.6e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|282163973|ref|YP_003356358.1| - 1.3e-07 31.5 0.0 2.5e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|282163973|ref|YP_003356358.1| - 0.016 14.1 1.1 0.044 12.6 0.1 2.2 3 0 0 3 3 3 0 DNA polymerase type B, organellar and viral Fun_ATP-synt_8 PF05933.13 gi|282163974|ref|YP_003356359.1| - 3.9 7.7 8.1 0.27 11.4 0.6 2.9 2 1 1 3 3 3 0 Fungal ATP synthase protein 8 (A6L) ABC_tran PF00005.27 gi|282163975|ref|YP_003356360.1| - 9.3e-55 184.9 0.0 2.1e-26 93.1 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|282163975|ref|YP_003356360.1| - 2.4e-20 73.6 0.4 6.2e-07 29.5 0.0 4.2 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282163975|ref|YP_003356360.1| - 1.8e-13 50.5 1.0 6.8e-07 28.9 0.1 3.2 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|282163975|ref|YP_003356360.1| - 1.8e-09 38.4 0.4 7.7e-05 23.3 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|282163975|ref|YP_003356360.1| - 1.3e-08 34.5 0.8 0.0022 17.7 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|282163975|ref|YP_003356360.1| - 1.8e-07 31.7 0.1 0.0075 16.7 0.1 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|282163975|ref|YP_003356360.1| - 4.6e-07 30.2 0.9 0.0078 16.5 0.1 3.2 3 1 1 4 4 3 2 AAA domain SbcCD_C PF13558.6 gi|282163975|ref|YP_003356360.1| - 1.3e-06 28.5 0.2 0.037 14.2 0.1 3.2 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit T2SSE PF00437.20 gi|282163975|ref|YP_003356360.1| - 4.3e-06 26.0 0.4 0.21 10.6 0.0 3.2 3 0 0 3 3 3 2 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|282163975|ref|YP_003356360.1| - 1.2e-05 25.3 0.0 0.16 11.9 0.0 3.1 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|282163975|ref|YP_003356360.1| - 2.6e-05 24.0 1.9 0.16 11.7 0.2 2.9 2 1 0 2 2 2 2 AAA domain NTPase_1 PF03266.15 gi|282163975|ref|YP_003356360.1| - 3.6e-05 23.7 1.1 0.2 11.6 0.0 2.9 3 0 0 3 3 3 2 NTPase NACHT PF05729.12 gi|282163975|ref|YP_003356360.1| - 4.8e-05 23.3 0.6 0.053 13.4 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_24 PF13479.6 gi|282163975|ref|YP_003356360.1| - 5.7e-05 22.9 0.1 0.27 10.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|282163975|ref|YP_003356360.1| - 7.3e-05 23.0 0.0 0.41 10.8 0.0 2.6 2 1 0 2 2 2 2 AAA domain FtsK_SpoIIIE PF01580.18 gi|282163975|ref|YP_003356360.1| - 8.6e-05 22.0 0.3 0.15 11.3 0.1 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family NB-ARC PF00931.22 gi|282163975|ref|YP_003356360.1| - 8.9e-05 21.8 0.6 0.13 11.5 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain TsaE PF02367.17 gi|282163975|ref|YP_003356360.1| - 9e-05 22.5 0.5 0.025 14.6 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_19 PF13245.6 gi|282163975|ref|YP_003356360.1| - 0.00017 21.9 0.2 0.038 14.3 0.0 2.8 3 0 0 3 3 2 1 AAA domain MMR_HSR1 PF01926.23 gi|282163975|ref|YP_003356360.1| - 0.00017 21.6 0.1 0.13 12.3 0.0 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|282163975|ref|YP_003356360.1| - 0.00039 19.7 0.0 0.85 8.9 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.6 gi|282163975|ref|YP_003356360.1| - 0.0004 20.9 0.3 0.33 11.5 0.1 2.6 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|282163975|ref|YP_003356360.1| - 0.00049 19.7 0.4 0.24 11.0 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|282163975|ref|YP_003356360.1| - 0.00054 20.0 0.0 0.62 10.1 0.0 3.3 3 0 0 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|282163975|ref|YP_003356360.1| - 0.00061 19.7 0.2 0.12 12.3 0.0 2.5 2 0 0 2 2 2 1 RsgA GTPase PRK PF00485.18 gi|282163975|ref|YP_003356360.1| - 0.0008 19.2 0.0 0.32 10.7 0.0 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family cobW PF02492.19 gi|282163975|ref|YP_003356360.1| - 0.0012 18.4 0.4 0.82 9.2 0.1 2.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|282163975|ref|YP_003356360.1| - 0.0018 18.2 4.3 0.14 12.0 0.1 3.0 4 0 0 4 4 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.29 gi|282163975|ref|YP_003356360.1| - 0.0018 18.7 0.6 3.2 8.2 0.0 3.1 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 gi|282163975|ref|YP_003356360.1| - 0.0021 17.7 0.1 0.81 9.3 0.0 2.5 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.6 gi|282163975|ref|YP_003356360.1| - 0.0026 18.0 0.2 1.9 8.7 0.2 2.5 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|282163975|ref|YP_003356360.1| - 0.0029 17.5 0.2 0.3 11.0 0.0 2.5 2 0 0 2 2 2 1 Adenylylsulphate kinase Sigma54_activat PF00158.26 gi|282163975|ref|YP_003356360.1| - 0.0033 17.1 0.1 0.3 10.8 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain SRP54 PF00448.22 gi|282163975|ref|YP_003356360.1| - 0.0036 17.0 0.6 0.19 11.3 0.1 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|282163975|ref|YP_003356360.1| - 0.0043 16.7 0.1 1.7 8.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|282163975|ref|YP_003356360.1| - 0.0047 15.6 0.0 1.3 7.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|282163975|ref|YP_003356360.1| - 0.0058 16.4 0.1 0.43 10.2 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.22 gi|282163975|ref|YP_003356360.1| - 0.0062 16.9 0.0 0.94 9.9 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_7 PF12775.7 gi|282163975|ref|YP_003356360.1| - 0.0094 15.5 0.2 4.9 6.6 0.1 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|282163975|ref|YP_003356360.1| - 0.015 14.6 0.2 0.88 8.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) KdpD PF02702.17 gi|282163975|ref|YP_003356360.1| - 0.015 14.8 0.1 0.73 9.3 0.0 2.3 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain CbiA PF01656.23 gi|282163975|ref|YP_003356360.1| - 0.016 15.3 0.9 1.9 8.5 0.0 2.7 3 0 0 3 3 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain SH3_18 PF18354.1 gi|282163975|ref|YP_003356360.1| - 0.016 15.2 0.0 0.054 13.5 0.0 1.8 1 0 0 1 1 1 0 CarS bacterial SH3 domain DUF87 PF01935.17 gi|282163975|ref|YP_003356360.1| - 0.017 15.3 2.0 0.43 10.6 0.1 2.6 3 0 0 3 3 2 0 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|282163975|ref|YP_003356360.1| - 0.019 13.9 0.6 0.62 8.9 0.1 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.17 gi|282163975|ref|YP_003356360.1| - 0.022 14.5 1.8 0.78 9.4 0.0 3.3 4 0 0 4 4 3 0 IstB-like ATP binding protein G-alpha PF00503.20 gi|282163975|ref|YP_003356360.1| - 0.023 13.9 0.0 0.91 8.6 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit ATPase PF06745.13 gi|282163975|ref|YP_003356360.1| - 0.025 13.9 3.3 0.31 10.3 0.1 2.7 3 0 0 3 3 2 0 KaiC DnaB_C PF03796.15 gi|282163975|ref|YP_003356360.1| - 0.032 13.6 0.1 0.63 9.3 0.0 2.3 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain PIF1 PF05970.14 gi|282163975|ref|YP_003356360.1| - 0.041 13.0 0.1 2.3 7.3 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase Pox_A32 PF04665.12 gi|282163975|ref|YP_003356360.1| - 0.041 13.3 0.2 2.1 7.8 0.0 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein BCA_ABC_TP_C PF12399.8 gi|282163975|ref|YP_003356360.1| - 0.053 13.5 0.1 7.7 6.6 0.0 2.6 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter PduV-EutP PF10662.9 gi|282163975|ref|YP_003356360.1| - 0.07 12.9 1.8 1.6 8.5 0.1 2.6 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.14 gi|282163975|ref|YP_003356360.1| - 0.084 12.9 0.1 15 5.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|282163975|ref|YP_003356360.1| - 0.09 12.7 0.0 2.6 7.9 0.0 2.4 2 0 0 2 2 2 0 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|282163975|ref|YP_003356360.1| - 0.17 11.3 0.3 20 4.5 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DLIC PF05783.11 gi|282163975|ref|YP_003356360.1| - 0.19 10.5 0.2 9.3 4.9 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) ABC_ATPase PF09818.9 gi|282163975|ref|YP_003356360.1| - 0.84 8.4 6.7 4.9 5.8 0.2 3.7 4 0 0 4 4 4 0 Predicted ATPase of the ABC class CbiQ PF02361.16 gi|282163976|ref|YP_003356361.1| - 1.5e-29 103.2 9.3 1.8e-29 103.0 9.3 1.1 1 0 0 1 1 1 1 Cobalt transport protein PAS PF00989.25 gi|282163977|ref|YP_003356362.1| - 1.8e-24 85.9 0.2 2.4e-16 59.7 0.0 3.9 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|282163977|ref|YP_003356362.1| - 1.4e-22 79.9 0.0 1.2e-15 57.7 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|282163977|ref|YP_003356362.1| - 1.5e-15 57.4 0.0 9.4e-10 38.7 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|282163977|ref|YP_003356362.1| - 6.5e-15 55.6 0.0 1.9e-14 54.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|282163977|ref|YP_003356362.1| - 2.6e-14 53.2 0.0 3.9e-11 43.1 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|282163977|ref|YP_003356362.1| - 2.2e-05 24.4 0.0 0.019 15.0 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|282163977|ref|YP_003356362.1| - 0.00067 19.6 0.0 0.0016 18.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.6 gi|282163977|ref|YP_003356362.1| - 0.0028 18.2 0.0 1.6 9.3 0.0 3.5 2 1 1 3 3 3 1 PAS domain YabP PF07873.11 gi|282163977|ref|YP_003356362.1| - 0.0066 16.2 0.2 0.1 12.4 0.1 2.4 2 0 0 2 2 2 1 YabP family HATPase_c_5 PF14501.6 gi|282163977|ref|YP_003356362.1| - 0.027 14.4 0.0 0.099 12.6 0.0 1.9 2 0 0 2 2 2 0 GHKL domain CHD5 PF04420.14 gi|282163977|ref|YP_003356362.1| - 0.044 13.7 0.2 4.6 7.1 0.3 2.2 2 0 0 2 2 2 0 CHD5-like protein CCDC-167 PF15188.6 gi|282163977|ref|YP_003356362.1| - 0.045 14.1 0.7 0.045 14.1 0.7 2.5 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 Toprim_N PF08275.11 gi|282163977|ref|YP_003356362.1| - 0.066 13.3 0.0 0.56 10.3 0.0 2.1 2 0 0 2 2 2 0 DNA primase catalytic core, N-terminal domain OmpH PF03938.14 gi|282163977|ref|YP_003356362.1| - 0.073 13.4 2.3 2 8.8 0.1 2.8 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) BRE1 PF08647.11 gi|282163977|ref|YP_003356362.1| - 0.21 11.7 2.3 1 9.5 0.2 2.4 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase Apolipoprotein PF01442.18 gi|282163977|ref|YP_003356362.1| - 6.5 6.6 8.6 3.9 7.3 0.4 2.4 3 0 0 3 3 2 0 Apolipoprotein A1/A4/E domain E1-E2_ATPase PF00122.20 gi|282163978|ref|YP_003356363.1| - 1.2e-53 181.3 3.0 1.2e-53 181.3 3.0 3.1 4 1 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|282163978|ref|YP_003356363.1| - 7.4e-46 157.1 2.0 1.1e-45 156.5 0.9 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|282163978|ref|YP_003356363.1| - 3.5e-07 30.2 0.2 0.0014 18.5 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|282163978|ref|YP_003356363.1| - 5.3e-05 23.7 0.0 0.00018 22.0 0.0 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|282163978|ref|YP_003356363.1| - 0.00026 21.1 0.1 0.00077 19.6 0.1 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF1529 PF07485.11 gi|282163979|ref|YP_003356364.1| - 4.7e-79 262.1 0.1 3.6e-42 143.1 0.0 2.0 2 0 0 2 2 2 2 Domain of Unknown Function (DUF1259) DUF1529 PF07485.11 gi|282163980|ref|YP_003356365.1| - 5e-77 255.6 0.2 1.5e-42 144.3 0.0 2.1 2 0 0 2 2 2 2 Domain of Unknown Function (DUF1259) Polyketide_cyc2 PF10604.9 gi|282163980|ref|YP_003356365.1| - 0.036 14.3 0.5 0.12 12.6 0.1 1.9 2 1 0 2 2 2 0 Polyketide cyclase / dehydrase and lipid transport Alfin PF12165.8 gi|282163980|ref|YP_003356365.1| - 0.18 11.5 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Alfin Glyco_hydro_3_C PF01915.22 gi|282163981|ref|YP_003356366.1| - 2.5e-55 187.6 0.0 4.9e-55 186.6 0.0 1.5 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.21 gi|282163981|ref|YP_003356366.1| - 3.3e-53 181.1 0.0 5.2e-53 180.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Fn3-like PF14310.6 gi|282163981|ref|YP_003356366.1| - 5.8e-24 84.0 0.0 1.1e-23 83.1 0.0 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain PFK PF00365.20 gi|282163982|ref|YP_003356367.1| - 4e-98 328.3 4.6 4.6e-98 328.1 4.6 1.0 1 0 0 1 1 1 1 Phosphofructokinase NAD_kinase PF01513.21 gi|282163982|ref|YP_003356367.1| - 0.0014 17.9 0.8 0.0027 16.9 0.2 1.7 1 1 1 2 2 2 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|282163982|ref|YP_003356367.1| - 0.021 14.5 0.5 0.056 13.1 0.2 1.8 1 1 0 1 1 1 0 Diacylglycerol kinase catalytic domain MTD PF01993.18 gi|282163983|ref|YP_003356368.1| - 8e-126 419.0 1.5 8.9e-126 418.8 1.5 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Pyridox_ox_2 PF12900.7 gi|282163984|ref|YP_003356369.1| - 1.1e-18 67.6 0.0 1.3e-18 67.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|282163984|ref|YP_003356369.1| - 0.0015 18.7 0.0 0.002 18.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Calici_MSP PF05752.11 gi|282163984|ref|YP_003356369.1| - 0.063 13.1 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 Calicivirus minor structural protein TrkA_N PF02254.18 gi|282163985|ref|YP_003356370.1| - 3.1e-46 156.4 5.5 9.3e-24 83.9 0.1 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|282163985|ref|YP_003356370.1| - 1e-19 70.1 0.0 3.6e-09 36.3 0.0 2.7 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.16 gi|282163985|ref|YP_003356370.1| - 3.6e-16 58.9 10.7 7.6e-16 57.8 10.7 1.5 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.31 gi|282163985|ref|YP_003356370.1| - 3.2e-05 23.3 7.7 5.5e-05 22.5 7.7 1.3 1 0 0 1 1 1 1 Ion transport protein XdhC_C PF13478.6 gi|282163985|ref|YP_003356370.1| - 0.00041 20.8 0.3 0.51 10.8 0.2 2.3 2 0 0 2 2 2 2 XdhC Rossmann domain NAD_binding_7 PF13241.6 gi|282163985|ref|YP_003356370.1| - 0.0034 17.8 0.3 0.59 10.6 0.0 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|282163985|ref|YP_003356370.1| - 0.0053 16.1 0.0 0.013 14.9 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|282163985|ref|YP_003356370.1| - 0.015 15.4 1.9 0.04 14.0 0.0 2.6 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FIIND PF13553.6 gi|282163985|ref|YP_003356370.1| - 0.03 13.7 0.0 0.053 12.9 0.0 1.3 1 0 0 1 1 1 0 Function to find F420_oxidored PF03807.17 gi|282163985|ref|YP_003356370.1| - 0.071 13.7 0.4 16 6.2 0.1 2.9 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent PsiE PF06146.12 gi|282163986|ref|YP_003356371.1| - 1.1e-09 38.5 11.5 1.1e-09 38.5 11.5 1.8 2 1 0 2 2 2 1 Phosphate-starvation-inducible E DUF2070 PF09843.9 gi|282163986|ref|YP_003356371.1| - 2 6.6 14.8 2.5 6.3 14.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) MerC PF03203.14 gi|282163986|ref|YP_003356371.1| - 5.8 7.4 13.0 14 6.2 12.7 1.7 1 1 0 1 1 1 0 MerC mercury resistance protein PsiE PF06146.12 gi|282163987|ref|YP_003356372.1| - 2e-13 50.5 7.8 2e-13 50.5 7.8 2.0 2 0 0 2 2 2 1 Phosphate-starvation-inducible E DUF2070 PF09843.9 gi|282163987|ref|YP_003356372.1| - 0.48 8.7 11.6 0.59 8.4 11.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) MerC PF03203.14 gi|282163987|ref|YP_003356372.1| - 2.2 8.8 8.7 34 4.9 9.3 2.0 1 1 1 2 2 2 0 MerC mercury resistance protein PseudoU_synth_1 PF01416.20 gi|282163988|ref|YP_003356373.1| - 2.6e-32 111.5 0.0 1.5e-24 86.5 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase zinc_ribbon_6 PF14599.6 gi|282163989|ref|YP_003356374.1| - 0.0061 16.6 4.8 0.043 13.8 1.9 2.1 1 1 1 2 2 2 2 Zinc-ribbon ArfGap PF01412.18 gi|282163989|ref|YP_003356374.1| - 0.044 13.9 0.5 0.051 13.6 0.5 1.1 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf DUF21 PF01595.20 gi|282163990|ref|YP_003356375.1| - 6.1e-49 166.1 3.8 8.2e-49 165.7 3.8 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|282163990|ref|YP_003356375.1| - 3.8e-23 81.3 0.0 7.8e-23 80.3 0.0 1.6 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 gi|282163990|ref|YP_003356375.1| - 9.7e-15 54.8 0.5 3.1e-06 27.5 0.3 2.7 2 0 0 2 2 2 2 CBS domain Colicin_V PF02674.16 gi|282163990|ref|YP_003356375.1| - 7.6 6.5 7.8 0.16 11.9 0.8 1.8 2 0 0 2 2 2 0 Colicin V production protein SurE PF01975.17 gi|282163991|ref|YP_003356376.1| - 6.4e-52 176.2 0.9 7.8e-52 175.9 0.9 1.1 1 0 0 1 1 1 1 Survival protein SurE RFX_DNA_binding PF02257.15 gi|282163991|ref|YP_003356376.1| - 0.21 12.2 0.0 14 6.4 0.0 2.2 2 0 0 2 2 2 0 RFX DNA-binding domain MFS_1 PF07690.16 gi|282163992|ref|YP_003356377.1| - 4.7e-50 170.5 48.0 4.7e-50 170.5 48.0 3.6 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF21 PF01595.20 gi|282163992|ref|YP_003356377.1| - 0.018 14.8 0.9 0.018 14.8 0.9 4.1 3 1 1 4 4 4 0 Cyclin M transmembrane N-terminal domain Ldr_toxin PF13940.6 gi|282163992|ref|YP_003356377.1| - 0.032 14.3 8.3 0.15 12.2 0.1 4.0 3 0 0 3 3 3 0 Toxin Ldr, type I toxin-antitoxin system Sar8_2 PF03058.14 gi|282163993|ref|YP_003356378.1| - 0.0093 16.5 0.3 0.016 15.7 0.1 1.6 2 0 0 2 2 2 1 Sar8.2 family Ank_3 PF13606.6 gi|282163993|ref|YP_003356378.1| - 0.013 16.0 0.1 0.043 14.4 0.0 1.9 2 0 0 2 2 2 0 Ankyrin repeat ATP-grasp_3 PF02655.14 gi|282163994|ref|YP_003356379.1| - 6.6e-34 117.3 0.0 9.4e-34 116.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|282163994|ref|YP_003356379.1| - 0.0003 21.0 0.0 0.00064 19.9 0.0 1.6 1 0 0 1 1 1 1 pre ATP-grasp 3 domain Dala_Dala_lig_C PF07478.13 gi|282163994|ref|YP_003356379.1| - 0.017 14.7 0.0 0.034 13.7 0.0 1.5 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|282163994|ref|YP_003356379.1| - 0.017 14.9 0.0 0.034 13.9 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.6 gi|282163994|ref|YP_003356379.1| - 0.076 12.3 0.0 2 7.6 0.0 2.1 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp GATase PF00117.28 gi|282163994|ref|YP_003356379.1| - 0.17 11.7 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Hydantoinase_A PF01968.18 gi|282163995|ref|YP_003356380.1| - 1.6e-22 80.1 0.4 2.3e-22 79.6 0.4 1.2 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|282163995|ref|YP_003356380.1| - 0.0094 14.6 0.4 0.42 9.1 0.0 2.6 3 1 0 3 3 3 2 MutL protein FtsA PF14450.6 gi|282163995|ref|YP_003356380.1| - 0.12 12.8 1.0 3.2 8.2 0.2 2.6 2 1 0 2 2 2 0 Cell division protein FtsA T2SSE PF00437.20 gi|282163997|ref|YP_003356382.1| - 1.5e-45 155.4 0.0 2.5e-45 154.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|282163997|ref|YP_003356382.1| - 0.13 12.0 0.1 0.27 11.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSF PF00482.23 gi|282163998|ref|YP_003356383.1| - 2.3e-30 105.1 0.5 1.6e-15 57.2 0.2 5.8 8 0 0 8 8 8 2 Type II secretion system (T2SS), protein F Sec20 PF03908.13 gi|282163998|ref|YP_003356383.1| - 0.17 11.8 3.8 0.6 10.1 0.1 3.1 3 0 0 3 3 3 0 Sec20 PspB PF06667.12 gi|282163998|ref|YP_003356383.1| - 0.39 10.8 2.1 1.9 8.6 0.0 3.0 2 0 0 2 2 2 0 Phage shock protein B ATPase PF06745.13 gi|282163999|ref|YP_003356384.1| - 1.8e-08 34.1 0.0 2.4e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 KaiC MukB PF04310.12 gi|282163999|ref|YP_003356384.1| - 0.02 14.7 0.0 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal RYDR_ITPR PF01365.21 gi|282163999|ref|YP_003356384.1| - 0.053 12.9 0.0 0.071 12.5 0.0 1.1 1 0 0 1 1 1 0 RIH domain Peptidase_S10 PF00450.22 gi|282163999|ref|YP_003356384.1| - 0.13 11.6 0.1 0.19 11.1 0.1 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase LysE PF01810.18 gi|282164001|ref|YP_003356386.1| - 7.4e-28 97.3 13.5 8.5e-28 97.1 13.5 1.0 1 0 0 1 1 1 1 LysE type translocator NMT1_3 PF16868.5 gi|282164002|ref|YP_003356387.1| - 5.5e-82 275.4 3.4 6.3e-82 275.2 3.4 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|282164002|ref|YP_003356387.1| - 2.4e-11 44.0 0.2 3.9e-11 43.3 0.2 1.4 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|282164002|ref|YP_003356387.1| - 1.5e-06 28.0 0.0 2.7e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|282164002|ref|YP_003356387.1| - 3e-06 26.8 0.0 6.9e-06 25.6 0.0 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 OpuAC PF04069.12 gi|282164002|ref|YP_003356387.1| - 0.03 13.9 0.2 0.074 12.6 0.2 1.8 1 1 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system PBP_like PF12727.7 gi|282164002|ref|YP_003356387.1| - 0.038 13.1 0.0 0.056 12.5 0.0 1.2 1 0 0 1 1 1 0 PBP superfamily domain DUF1850 PF08905.11 gi|282164003|ref|YP_003356388.1| - 2.3e-22 79.1 0.1 3.7e-22 78.5 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) Prot_ATP_ID_OB PF16450.5 gi|282164003|ref|YP_003356388.1| - 0.077 13.0 0.0 14 5.8 0.0 2.5 2 0 0 2 2 2 0 Proteasomal ATPase OB C-terminal domain PilX_N PF14341.6 gi|282164003|ref|YP_003356388.1| - 0.084 12.8 0.8 0.14 12.1 0.8 1.4 1 0 0 1 1 1 0 PilX N-terminal DctM PF06808.12 gi|282164004|ref|YP_003356389.1| - 2e-93 313.5 47.1 2e-93 313.5 47.1 1.8 2 0 0 2 2 2 1 Tripartite ATP-independent periplasmic transporter, DctM component DUF3394 PF11874.8 gi|282164004|ref|YP_003356389.1| - 0.00087 19.0 1.1 0.00087 19.0 1.1 3.0 3 0 0 3 3 3 1 Domain of unknown function (DUF3394) DZR PF12773.7 gi|282164005|ref|YP_003356390.1| - 0.00082 19.4 4.4 0.0016 18.4 4.4 1.6 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|282164005|ref|YP_003356390.1| - 0.00085 19.0 5.3 0.015 15.0 1.7 3.0 2 1 0 2 2 2 1 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|282164005|ref|YP_003356390.1| - 0.0018 17.9 5.2 1.3 8.8 1.3 3.2 2 1 1 3 3 3 2 NADH pyrophosphatase zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|282164005|ref|YP_003356390.1| - 0.0019 18.0 7.1 0.32 10.9 0.1 3.4 4 0 0 4 4 4 2 Zinc finger found in FPG and IleRS zf_C2HC_14 PF18574.1 gi|282164005|ref|YP_003356390.1| - 0.0023 17.7 0.2 0.0023 17.7 0.2 2.1 3 0 0 3 3 2 1 C2HC Zing finger domain zinc-ribbons_6 PF07191.12 gi|282164005|ref|YP_003356390.1| - 0.0028 17.6 7.5 0.019 14.9 2.5 2.1 1 1 1 2 2 2 1 zinc-ribbons RecR PF02132.15 gi|282164005|ref|YP_003356390.1| - 0.0053 16.3 3.0 0.0092 15.5 0.4 2.3 2 0 0 2 2 2 1 RecR protein DUF4428 PF14471.6 gi|282164005|ref|YP_003356390.1| - 0.0056 16.6 4.1 0.01 15.7 4.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) LIM PF00412.22 gi|282164005|ref|YP_003356390.1| - 0.012 15.8 5.6 0.053 13.8 1.7 2.2 1 1 1 2 2 2 0 LIM domain Trm112p PF03966.16 gi|282164005|ref|YP_003356390.1| - 0.017 15.7 1.4 2.3 8.8 0.1 2.2 2 0 0 2 2 2 0 Trm112p-like protein zf_UBZ PF18439.1 gi|282164005|ref|YP_003356390.1| - 0.02 14.5 7.2 0.76 9.4 0.1 3.2 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger Siva PF05458.12 gi|282164005|ref|YP_003356390.1| - 0.036 13.8 3.2 0.036 13.8 3.2 1.1 1 0 0 1 1 1 0 Cd27 binding protein (Siva) zf-C3HC4_3 PF13920.6 gi|282164005|ref|YP_003356390.1| - 0.064 13.1 9.6 0.48 10.3 3.7 2.2 1 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF1258 PF06869.12 gi|282164005|ref|YP_003356390.1| - 0.13 11.7 3.2 0.088 12.3 2.3 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1258) C1_1 PF00130.22 gi|282164005|ref|YP_003356390.1| - 0.16 11.9 8.3 0.057 13.3 2.0 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.6 gi|282164005|ref|YP_003356390.1| - 0.21 11.1 8.7 0.31 10.5 4.2 2.7 2 1 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.6 gi|282164005|ref|YP_003356390.1| - 0.72 9.9 13.2 0.22 11.6 2.9 3.1 2 1 1 3 3 3 0 YhfH-like protein zinc_ribbon_4 PF13717.6 gi|282164005|ref|YP_003356390.1| - 1.3 9.0 7.7 7.9 6.5 0.6 3.2 2 1 1 3 3 3 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|282164005|ref|YP_003356390.1| - 1.9 8.2 8.7 5 6.9 1.1 2.9 2 1 1 3 3 3 0 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|282164005|ref|YP_003356390.1| - 2.1 7.9 8.4 7.3 6.2 0.1 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding PknG_rubred PF16919.5 gi|282164005|ref|YP_003356390.1| - 2.2 8.4 4.7 22 5.2 4.7 2.0 1 1 0 1 1 1 0 Protein kinase G rubredoxin domain OrfB_Zn_ribbon PF07282.11 gi|282164005|ref|YP_003356390.1| - 2.9 7.9 7.7 5 7.1 1.0 2.7 1 1 2 3 3 3 0 Putative transposase DNA-binding domain Ribosomal_L37e PF01907.19 gi|282164005|ref|YP_003356390.1| - 4.4 7.5 11.3 11 6.3 4.1 2.4 1 1 1 2 2 2 0 Ribosomal protein L37e HypA PF01155.19 gi|282164005|ref|YP_003356390.1| - 4.5 7.3 7.6 25 4.9 7.6 1.9 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2_4 PF13894.6 gi|282164005|ref|YP_003356390.1| - 5.6 8.1 9.4 11 7.2 0.3 3.3 3 1 0 3 3 3 0 C2H2-type zinc finger zf-HIT PF04438.16 gi|282164005|ref|YP_003356390.1| - 5.8 6.9 14.9 23 5.0 0.7 3.0 2 1 1 3 3 3 0 HIT zinc finger DUF362 PF04015.12 gi|282164006|ref|YP_003356391.1| - 2.4e-24 86.7 0.0 3.1e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Lactamase_B_3 PF13483.6 gi|282164007|ref|YP_003356392.1| - 6.5e-20 71.7 0.2 1.3e-19 70.6 0.1 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|282164007|ref|YP_003356392.1| - 3.1e-18 66.0 0.1 4.2e-18 65.6 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|282164007|ref|YP_003356392.1| - 2e-09 37.7 0.5 3.1e-09 37.1 0.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily HTH_Tnp_1 PF01527.20 gi|282164008|ref|YP_003356393.1| - 8.1e-13 48.5 1.4 1e-12 48.2 1.2 1.4 1 1 0 1 1 1 1 Transposase HTH_28 PF13518.6 gi|282164008|ref|YP_003356393.1| - 9.6e-06 25.6 0.0 2e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|282164008|ref|YP_003356393.1| - 0.00011 21.6 0.4 0.00035 19.9 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Frankia_peptide PF14407.6 gi|282164008|ref|YP_003356393.1| - 0.03 14.3 0.1 0.057 13.4 0.1 1.4 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. NRBF2 PF08961.10 gi|282164008|ref|YP_003356393.1| - 0.038 13.6 2.4 0.04 13.5 2.4 1.1 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator rve PF00665.26 gi|282164009|ref|YP_003356394.1| - 2.1e-29 102.1 0.0 3.5e-29 101.4 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|282164009|ref|YP_003356394.1| - 2.2e-18 65.8 0.1 3.7e-18 65.0 0.1 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 gi|282164009|ref|YP_003356394.1| - 2.5e-11 43.5 7.9 3.3e-11 43.1 5.7 2.2 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.6 gi|282164009|ref|YP_003356394.1| - 1.1e-06 28.7 2.6 1.1e-06 28.7 2.6 1.9 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 gi|282164009|ref|YP_003356394.1| - 2.1e-06 28.0 0.2 3.4e-06 27.3 0.2 1.3 1 0 0 1 1 1 1 DDE domain HTH_29 PF13551.6 gi|282164009|ref|YP_003356394.1| - 0.0092 16.0 0.1 0.053 13.5 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|282164009|ref|YP_003356394.1| - 0.05 13.7 0.1 0.16 12.2 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Gly-zipper_YMGG PF13441.6 gi|282164010|ref|YP_003356395.1| - 0.0011 18.7 6.0 0.29 10.9 0.1 2.2 2 1 0 2 2 2 2 YMGG-like Gly-zipper Gly-zipper_OmpA PF13436.6 gi|282164010|ref|YP_003356395.1| - 0.045 13.5 8.4 0.62 9.9 0.2 2.4 2 1 0 2 2 2 0 Glycine-zipper domain Gly-zipper_Omp PF13488.6 gi|282164010|ref|YP_003356395.1| - 0.15 12.1 1.0 0.15 12.1 1.0 2.2 1 1 1 2 2 2 0 Glycine zipper DUF543 PF04418.12 gi|282164010|ref|YP_003356395.1| - 0.94 9.5 4.0 9.1 6.3 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF543) FeoB_C PF07664.12 gi|282164010|ref|YP_003356395.1| - 2.7 7.8 6.5 10 5.9 0.5 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus Tim17 PF02466.19 gi|282164010|ref|YP_003356395.1| - 4.3 7.7 8.3 5.9 7.3 4.4 2.1 1 1 1 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family 5TM-5TMR_LYT PF07694.12 gi|282164010|ref|YP_003356395.1| - 4.6 6.7 14.1 0.89 9.0 3.3 2.1 1 1 1 2 2 2 0 5TMR of 5TMR-LYT Romo1 PF10247.9 gi|282164010|ref|YP_003356395.1| - 9 6.7 13.0 10 6.6 2.4 2.4 1 1 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 SPC12 PF06645.13 gi|282164010|ref|YP_003356395.1| - 9.4 6.4 8.0 3.5 7.8 1.1 2.2 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) PadR PF03551.14 gi|282164011|ref|YP_003356396.1| - 1.4e-11 44.2 0.0 2.3e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|282164011|ref|YP_003356396.1| - 0.012 16.2 0.0 0.018 15.6 0.0 1.3 1 0 0 1 1 1 0 Replication terminator protein HATPase_c PF02518.26 gi|282164012|ref|YP_003356397.1| - 3.9e-16 59.5 0.0 9e-16 58.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|282164012|ref|YP_003356397.1| - 1.2e-15 57.5 0.0 3e-10 40.1 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|282164012|ref|YP_003356397.1| - 7.7e-15 54.5 0.0 1.5e-06 28.0 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_9 PF13426.7 gi|282164012|ref|YP_003356397.1| - 1.6e-14 54.0 0.0 1.4e-10 41.3 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|282164012|ref|YP_003356397.1| - 7.8e-11 42.1 0.1 5.8e-06 26.5 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|282164012|ref|YP_003356397.1| - 3.3e-09 37.0 0.0 0.0015 18.7 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.6 gi|282164012|ref|YP_003356397.1| - 0.00024 21.1 0.0 0.00053 20.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|282164012|ref|YP_003356397.1| - 0.0025 17.7 0.0 0.0054 16.6 0.0 1.5 1 0 0 1 1 1 1 GHKL domain Lip_prot_lig_C PF10437.9 gi|282164012|ref|YP_003356397.1| - 0.014 15.4 0.3 0.98 9.5 0.0 3.1 3 0 0 3 3 3 0 Bacterial lipoate protein ligase C-terminus HTH_24 PF13412.6 gi|282164013|ref|YP_003356398.1| - 1.9e-14 52.9 0.2 2.8e-14 52.4 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|282164013|ref|YP_003356398.1| - 5e-14 51.9 0.2 8.2e-14 51.2 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|282164013|ref|YP_003356398.1| - 7.5e-06 25.8 0.0 1.3e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|282164013|ref|YP_003356398.1| - 8.5e-06 25.6 0.0 1.4e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|282164013|ref|YP_003356398.1| - 1e-05 25.3 0.0 1.9e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|282164013|ref|YP_003356398.1| - 1.7e-05 24.6 0.1 3.5e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|282164013|ref|YP_003356398.1| - 2e-05 24.4 0.0 3.8e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|282164013|ref|YP_003356398.1| - 0.00058 19.9 0.1 0.00092 19.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|282164013|ref|YP_003356398.1| - 0.00091 18.9 0.1 0.0015 18.2 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.6 gi|282164013|ref|YP_003356398.1| - 0.0019 18.1 0.0 0.0041 17.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|282164013|ref|YP_003356398.1| - 0.0031 17.1 0.1 0.0045 16.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|282164013|ref|YP_003356398.1| - 0.008 16.2 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 gi|282164013|ref|YP_003356398.1| - 0.043 13.7 0.0 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HTH_DeoR PF08220.12 gi|282164013|ref|YP_003356398.1| - 0.054 13.3 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TrmB PF01978.19 gi|282164013|ref|YP_003356398.1| - 0.054 13.4 0.1 0.12 12.3 0.1 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_CodY PF08222.11 gi|282164013|ref|YP_003356398.1| - 0.072 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain HemN_C PF06969.16 gi|282164013|ref|YP_003356398.1| - 0.077 13.1 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain AdoHcyase PF05221.17 gi|282164014|ref|YP_003356399.1| - 6e-68 229.2 0.0 1.9e-37 129.0 0.1 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|282164014|ref|YP_003356399.1| - 4e-53 179.8 3.2 4e-53 179.8 3.2 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|282164014|ref|YP_003356399.1| - 7.7e-12 44.9 2.0 1.6e-11 43.9 0.6 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|282164014|ref|YP_003356399.1| - 1e-09 38.2 1.4 1.8e-09 37.4 0.2 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox_2 PF07992.14 gi|282164014|ref|YP_003356399.1| - 0.0011 18.3 1.0 0.0021 17.3 0.3 2.0 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|282164014|ref|YP_003356399.1| - 0.0016 18.7 1.0 0.0068 16.7 0.1 2.6 3 0 0 3 3 3 1 TrkA-N domain 3HCDH_N PF02737.18 gi|282164014|ref|YP_003356399.1| - 0.022 14.6 0.5 0.022 14.6 0.5 2.6 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|282164014|ref|YP_003356399.1| - 0.032 13.3 0.8 2.7 7.0 1.0 2.3 1 1 1 2 2 2 0 FAD binding domain AlaDh_PNT_C PF01262.21 gi|282164014|ref|YP_003356399.1| - 0.033 13.5 3.0 0.084 12.2 3.0 1.7 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain THF_DHG_CYH_C PF02882.19 gi|282164014|ref|YP_003356399.1| - 0.055 12.8 1.5 0.32 10.3 1.5 2.0 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_7 PF13241.6 gi|282164014|ref|YP_003356399.1| - 0.095 13.2 0.6 0.4 11.1 0.2 2.2 2 1 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|282164014|ref|YP_003356399.1| - 0.11 12.6 2.2 0.25 11.5 1.0 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.27 gi|282164014|ref|YP_003356399.1| - 0.56 10.8 5.1 0.4 11.3 0.3 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase PfkB PF00294.24 gi|282164015|ref|YP_003356400.1| - 5.4e-32 111.3 0.0 6.8e-32 111.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase RAP1 PF07218.11 gi|282164015|ref|YP_003356400.1| - 0.043 12.1 0.4 0.057 11.7 0.4 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) APH PF01636.23 gi|282164016|ref|YP_003356401.1| - 5.5e-07 29.8 2.3 6.9e-07 29.4 0.5 2.0 2 1 0 2 2 2 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|282164016|ref|YP_003356401.1| - 0.037 13.6 0.0 0.065 12.8 0.0 1.3 1 0 0 1 1 1 0 RIO1 family EcKinase PF02958.20 gi|282164016|ref|YP_003356401.1| - 0.057 12.7 0.1 0.091 12.1 0.1 1.3 1 0 0 1 1 1 0 Ecdysteroid kinase APS_kinase PF01583.20 gi|282164017|ref|YP_003356402.1| - 2.8e-30 105.3 0.0 3.5e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|282164017|ref|YP_003356402.1| - 1.1e-08 35.4 0.0 1.5e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|282164017|ref|YP_003356402.1| - 3.6e-07 29.9 0.0 4e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|282164017|ref|YP_003356402.1| - 1.4e-06 28.9 0.0 2.4e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain CPT PF07931.12 gi|282164017|ref|YP_003356402.1| - 5.3e-06 26.4 0.3 4.6e-05 23.3 0.3 2.0 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 gi|282164017|ref|YP_003356402.1| - 8.4e-05 21.9 0.2 0.0012 18.2 0.1 2.3 1 1 1 2 2 2 1 Zeta toxin ATP_bind_1 PF03029.17 gi|282164017|ref|YP_003356402.1| - 0.00024 21.0 0.0 0.00031 20.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|282164017|ref|YP_003356402.1| - 0.001 18.1 0.1 0.0018 17.3 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|282164017|ref|YP_003356402.1| - 0.0011 18.9 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 NTPase 6PF2K PF01591.18 gi|282164017|ref|YP_003356402.1| - 0.0018 17.6 0.0 0.0098 15.2 0.0 1.9 1 1 0 1 1 1 1 6-phosphofructo-2-kinase AAA_17 PF13207.6 gi|282164017|ref|YP_003356402.1| - 0.01 16.2 0.4 0.17 12.3 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|282164017|ref|YP_003356402.1| - 0.012 16.1 0.0 0.018 15.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|282164017|ref|YP_003356402.1| - 0.012 15.4 0.5 0.5 10.1 0.0 2.1 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.6 gi|282164017|ref|YP_003356402.1| - 0.014 15.4 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|282164017|ref|YP_003356402.1| - 0.028 14.1 0.6 0.055 13.2 0.2 1.7 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|282164017|ref|YP_003356402.1| - 0.05 13.3 0.2 0.38 10.4 0.1 2.2 1 1 1 2 2 2 0 Thymidylate kinase AAA_16 PF13191.6 gi|282164017|ref|YP_003356402.1| - 0.084 13.3 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain SKI PF01202.22 gi|282164017|ref|YP_003356402.1| - 0.085 13.0 0.1 0.64 10.1 0.1 2.0 1 1 0 1 1 1 0 Shikimate kinase dNK PF01712.19 gi|282164017|ref|YP_003356402.1| - 0.091 12.6 0.1 14 5.5 0.0 2.2 1 1 0 2 2 2 0 Deoxynucleoside kinase SRP54 PF00448.22 gi|282164017|ref|YP_003356402.1| - 0.11 12.1 0.2 0.49 10.0 0.2 2.0 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|282164017|ref|YP_003356402.1| - 0.13 12.1 0.1 0.57 10.0 0.1 2.1 3 0 0 3 3 2 0 P-loop containing region of AAA domain Inositol_P PF00459.25 gi|282164018|ref|YP_003356403.1| - 3.8e-33 115.1 0.0 4.6e-33 114.9 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|282164018|ref|YP_003356403.1| - 1.5e-08 34.3 0.0 2.7e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain PAS_3 PF08447.12 gi|282164020|ref|YP_003356405.1| - 1.7e-29 101.9 0.1 3.6e-19 68.8 0.0 4.1 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|282164020|ref|YP_003356405.1| - 1.8e-22 79.6 0.1 2.1e-11 44.0 0.0 4.8 5 0 0 5 5 5 3 PAS domain PAS PF00989.25 gi|282164020|ref|YP_003356405.1| - 6.9e-21 74.4 0.0 2.3e-10 40.5 0.0 4.0 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.26 gi|282164020|ref|YP_003356405.1| - 2.9e-18 66.4 0.1 3e-17 63.2 0.0 2.6 3 0 0 3 3 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|282164020|ref|YP_003356405.1| - 1.2e-13 51.6 0.1 2.8e-13 50.4 0.1 1.7 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|282164020|ref|YP_003356405.1| - 2.8e-12 46.9 0.0 0.00016 21.9 0.0 3.9 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|282164020|ref|YP_003356405.1| - 5.5e-11 42.2 0.0 9e-06 25.6 0.0 3.0 2 0 0 2 2 2 2 PAS domain GAF PF01590.26 gi|282164020|ref|YP_003356405.1| - 1.2e-07 32.5 0.0 2.1e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|282164020|ref|YP_003356405.1| - 0.00048 20.5 0.0 0.00091 19.6 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|282164020|ref|YP_003356405.1| - 0.0059 16.6 0.0 0.016 15.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_6 PF08348.11 gi|282164020|ref|YP_003356405.1| - 0.14 12.1 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 YheO-like PAS domain DegS PF05384.11 gi|282164020|ref|YP_003356405.1| - 0.68 9.4 5.2 0.98 8.9 3.1 2.2 2 0 0 2 2 2 0 Sensor protein DegS dCache_1 PF02743.18 gi|282164021|ref|YP_003356406.1| - 6.1e-24 85.2 3.1 6.1e-24 85.2 3.1 2.3 3 0 0 3 3 3 1 Cache domain HATPase_c PF02518.26 gi|282164021|ref|YP_003356406.1| - 3.6e-21 75.8 0.0 7.4e-21 74.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|282164021|ref|YP_003356406.1| - 1.8e-11 44.2 0.0 2.3e-10 40.6 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|282164021|ref|YP_003356406.1| - 3.9e-10 39.9 0.0 2.2e-09 37.5 0.0 2.3 2 0 0 2 2 2 1 PAS domain HAMP PF00672.25 gi|282164021|ref|YP_003356406.1| - 6.1e-09 36.1 0.0 1.6e-08 34.7 0.0 1.8 1 0 0 1 1 1 1 HAMP domain Cache_3-Cache_2 PF17201.4 gi|282164021|ref|YP_003356406.1| - 2e-08 33.9 0.3 4.2e-08 32.8 0.3 1.5 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain PAS PF00989.25 gi|282164021|ref|YP_003356406.1| - 3.2e-08 33.6 0.0 8.1e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|282164021|ref|YP_003356406.1| - 2.1e-07 30.8 0.0 5.2e-07 29.5 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|282164021|ref|YP_003356406.1| - 3.7e-06 26.9 0.0 1.1e-05 25.4 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 gi|282164021|ref|YP_003356406.1| - 0.00011 22.4 0.0 0.0038 17.4 0.0 2.5 2 0 0 2 2 2 1 PAS fold sCache_3_2 PF17203.4 gi|282164021|ref|YP_003356406.1| - 0.00011 22.3 1.4 0.0062 16.7 0.1 2.4 1 1 1 2 2 2 1 Single cache domain 3 HATPase_c_5 PF14501.6 gi|282164021|ref|YP_003356406.1| - 0.0013 18.6 0.0 0.0032 17.4 0.0 1.6 1 0 0 1 1 1 1 GHKL domain dCache_3 PF14827.6 gi|282164021|ref|YP_003356406.1| - 0.0018 18.0 0.0 0.0037 17.0 0.0 1.4 1 0 0 1 1 1 1 Double sensory domain of two-component sensor kinase Sigma_reg_N PF13800.6 gi|282164021|ref|YP_003356406.1| - 0.043 14.1 3.6 0.12 12.7 0.5 2.7 3 0 0 3 3 3 0 Sigma factor regulator N-terminal PAS_12 PF18095.1 gi|282164021|ref|YP_003356406.1| - 0.049 13.3 0.0 0.097 12.3 0.0 1.4 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain HATPase_c_3 PF13589.6 gi|282164021|ref|YP_003356406.1| - 0.07 13.0 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Flavoprotein PF02441.19 gi|282164022|ref|YP_003356407.1| - 7e-11 42.1 0.0 9.3e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.27 gi|282164022|ref|YP_003356407.1| - 2.7e-09 36.5 11.0 1.7e-06 27.6 1.3 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282164022|ref|YP_003356407.1| - 5.5e-06 26.9 5.7 0.0014 19.2 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282164022|ref|YP_003356407.1| - 5.5e-05 24.0 6.5 0.0051 17.7 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|282164022|ref|YP_003356407.1| - 0.00022 21.1 12.6 0.022 14.8 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282164022|ref|YP_003356407.1| - 0.00043 20.4 10.0 0.03 14.5 2.0 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282164022|ref|YP_003356407.1| - 0.0019 18.2 1.4 0.0019 18.2 1.4 3.0 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|282164022|ref|YP_003356407.1| - 0.0034 18.1 8.8 0.31 11.8 0.4 3.2 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|282164022|ref|YP_003356407.1| - 0.0083 16.6 5.7 0.08 13.5 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282164022|ref|YP_003356407.1| - 0.01 16.3 1.9 0.01 16.3 1.9 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282164022|ref|YP_003356407.1| - 0.062 13.4 14.1 0.082 13.0 1.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282164022|ref|YP_003356407.1| - 0.69 10.1 11.9 1.2 9.3 1.7 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282164022|ref|YP_003356407.1| - 2.8 8.5 14.7 2.3 8.8 1.4 3.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I PAP2 PF01569.21 gi|282164023|ref|YP_003356408.1| - 4.2e-19 68.7 2.2 4.2e-19 68.7 2.2 2.5 3 0 0 3 3 3 2 PAP2 superfamily PAP2_3 PF14378.6 gi|282164023|ref|YP_003356408.1| - 1.5e-07 31.3 0.6 1.5e-07 31.3 0.6 2.8 2 1 1 3 3 3 1 PAP2 superfamily PMT_4TMC PF16192.5 gi|282164023|ref|YP_003356408.1| - 3.1 7.3 10.3 0.54 9.8 5.7 2.0 2 0 0 2 2 2 0 C-terminal four TMM region of protein-O-mannosyltransferase zf-ribbon_3 PF13248.6 gi|282164025|ref|YP_003356410.1| - 0.011 15.1 3.8 15 5.2 0.1 3.5 3 0 0 3 3 3 0 zinc-ribbon domain YhfH PF14149.6 gi|282164025|ref|YP_003356410.1| - 0.022 14.7 11.0 1 9.4 0.2 3.6 2 1 1 3 3 3 0 YhfH-like protein zf-NADH-PPase PF09297.11 gi|282164025|ref|YP_003356410.1| - 0.03 14.0 6.7 0.74 9.5 0.1 3.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Ephrin_rec_like PF07699.13 gi|282164025|ref|YP_003356410.1| - 0.067 13.0 0.7 2.2 8.1 0.4 2.3 2 0 0 2 2 2 0 Putative ephrin-receptor like Nop10p PF04135.12 gi|282164025|ref|YP_003356410.1| - 0.26 11.4 2.8 6.3 6.9 0.0 3.0 3 0 0 3 3 3 0 Nucleolar RNA-binding protein, Nop10p family DUF35_N PF12172.8 gi|282164025|ref|YP_003356410.1| - 0.3 11.0 13.7 0.86 9.5 0.0 3.7 3 1 1 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|282164025|ref|YP_003356410.1| - 0.69 10.0 6.6 0.66 10.0 0.4 2.6 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CpXC PF14353.6 gi|282164025|ref|YP_003356410.1| - 1.8 8.6 5.9 8.1 6.5 1.8 3.0 1 1 1 2 2 2 0 CpXC protein zf-ACC PF17848.1 gi|282164025|ref|YP_003356410.1| - 2.6 8.2 0.0 2.6 8.2 0.0 4.2 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf-ISL3 PF14690.6 gi|282164025|ref|YP_003356410.1| - 2.7 8.7 10.8 6.4 7.5 0.1 3.8 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_CPCC PF14206.6 gi|282164025|ref|YP_003356410.1| - 3 7.7 5.6 0.64 9.9 0.3 2.6 3 1 0 3 3 3 0 Cysteine-rich CPCC zf-tcix PF14952.6 gi|282164025|ref|YP_003356410.1| - 4.2 7.1 13.1 0.64 9.7 0.5 3.2 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Mu-like_Com PF10122.9 gi|282164025|ref|YP_003356410.1| - 5.4 6.6 12.1 5.7 6.5 0.0 3.5 3 1 0 3 3 3 0 Mu-like prophage protein Com PhnA_Zn_Ribbon PF08274.12 gi|282164025|ref|YP_003356410.1| - 6.8 6.7 11.3 4.4 7.3 0.1 3.8 4 0 0 4 4 4 0 PhnA Zinc-Ribbon DZR PF12773.7 gi|282164025|ref|YP_003356410.1| - 8 6.6 10.2 1.3 9.1 1.2 2.8 2 2 1 3 3 3 0 Double zinc ribbon zf-TFIIB PF13453.6 gi|282164025|ref|YP_003356410.1| - 8.7 5.8 9.0 27 4.2 0.0 3.8 4 0 0 4 4 4 0 Transcription factor zinc-finger PvlArgDC PF01862.16 gi|282164026|ref|YP_003356411.1| - 1.4e-60 203.8 0.0 1.5e-60 203.6 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) YlaH PF14036.6 gi|282164027|ref|YP_003356412.1| - 0.048 14.0 2.7 0.058 13.7 2.7 1.1 1 0 0 1 1 1 0 YlaH-like protein Phage_holin_3_6 PF07332.11 gi|282164027|ref|YP_003356412.1| - 0.31 11.1 3.9 0.36 10.9 3.9 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|282164027|ref|YP_003356412.1| - 2.3 6.9 4.1 2.1 7.0 4.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PAPS_reduct PF01507.19 gi|282164028|ref|YP_003356413.1| - 6.3e-45 153.3 0.0 9.5e-45 152.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.7 gi|282164028|ref|YP_003356413.1| - 9.2e-06 26.2 10.6 9.2e-06 26.2 10.6 2.9 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282164028|ref|YP_003356413.1| - 4e-05 24.1 6.0 0.0057 17.2 0.3 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282164028|ref|YP_003356413.1| - 4.5e-05 23.1 1.6 4.5e-05 23.1 1.6 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282164028|ref|YP_003356413.1| - 0.00017 21.5 14.2 0.0011 19.0 3.4 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282164028|ref|YP_003356413.1| - 0.00022 21.3 13.2 0.00022 21.3 13.2 3.0 4 1 0 4 4 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282164028|ref|YP_003356413.1| - 0.00077 19.5 13.7 0.00077 19.5 13.7 2.9 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282164028|ref|YP_003356413.1| - 0.00081 20.3 4.3 0.00081 20.3 4.3 3.5 3 1 1 4 4 2 1 4Fe-4S double cluster binding domain PUA PF01472.20 gi|282164028|ref|YP_003356413.1| - 0.011 15.7 0.2 0.032 14.2 0.1 1.9 2 0 0 2 2 2 0 PUA domain Fer4_2 PF12797.7 gi|282164028|ref|YP_003356413.1| - 0.02 15.0 3.4 0.02 15.0 3.4 3.8 3 0 0 3 3 3 0 4Fe-4S binding domain ATP_bind_3 PF01171.20 gi|282164028|ref|YP_003356413.1| - 0.022 14.5 0.0 0.04 13.7 0.0 1.5 1 0 0 1 1 1 0 PP-loop family Fer4_8 PF13183.6 gi|282164028|ref|YP_003356413.1| - 0.039 14.4 12.2 0.19 12.2 0.2 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain UPF0113 PF03657.13 gi|282164028|ref|YP_003356413.1| - 0.062 13.6 0.2 0.14 12.4 0.2 1.5 1 0 0 1 1 1 0 UPF0113 PUA domain Fer4_18 PF13746.6 gi|282164028|ref|YP_003356413.1| - 0.096 12.9 4.2 0.25 11.5 4.2 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain QueC PF06508.13 gi|282164028|ref|YP_003356413.1| - 0.31 10.5 0.0 0.31 10.5 0.0 2.1 2 0 0 2 2 1 0 Queuosine biosynthesis protein QueC Fer4_15 PF13459.6 gi|282164028|ref|YP_003356413.1| - 0.42 11.4 7.4 5.1 7.9 1.1 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Meth_synt_2 PF01717.18 gi|282164029|ref|YP_003356414.1| - 7.3e-44 150.4 8.3 2.8e-42 145.2 8.3 2.7 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|282164029|ref|YP_003356414.1| - 1e-05 25.2 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|282164029|ref|YP_003356414.1| - 3.2e-05 23.2 0.2 6e-05 22.4 0.2 1.6 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Cas_Csa5 PF09702.10 gi|282164029|ref|YP_003356414.1| - 0.37 11.1 3.1 0.37 11.1 0.1 2.5 3 0 0 3 3 3 0 CRISPR-associated protein (Cas_Csa5) Xan_ur_permease PF00860.20 gi|282164031|ref|YP_003356416.1| - 2.5e-37 128.5 54.0 4.8e-37 127.6 54.0 1.5 1 1 0 1 1 1 1 Permease family Fer2_3 PF13085.6 gi|282164032|ref|YP_003356417.1| - 0.0031 17.5 0.3 0.0041 17.1 0.3 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain PT PF04886.12 gi|282164032|ref|YP_003356417.1| - 0.0044 16.5 21.4 0.01 15.4 21.4 1.5 1 0 0 1 1 1 1 PT repeat TM2 PF05154.16 gi|282164032|ref|YP_003356417.1| - 0.0058 16.9 4.2 0.011 16.1 4.2 1.5 1 0 0 1 1 1 1 TM2 domain zf-C2HC5 PF06221.13 gi|282164032|ref|YP_003356417.1| - 0.023 14.7 6.0 0.037 14.0 6.0 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-B_box PF00643.24 gi|282164032|ref|YP_003356417.1| - 0.03 14.5 1.9 0.03 14.5 1.9 2.1 1 1 1 2 2 2 0 B-box zinc finger LIM PF00412.22 gi|282164032|ref|YP_003356417.1| - 0.053 13.7 3.3 0.082 13.1 3.3 1.2 1 0 0 1 1 1 0 LIM domain Gin PF10764.9 gi|282164032|ref|YP_003356417.1| - 0.12 12.3 4.8 0.26 11.3 4.8 1.6 1 0 0 1 1 1 0 Inhibitor of sigma-G Gin SPC12 PF06645.13 gi|282164032|ref|YP_003356417.1| - 0.14 12.3 3.9 0.22 11.6 3.9 1.3 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF4106 PF13388.6 gi|282164032|ref|YP_003356417.1| - 0.27 10.4 5.7 0.31 10.2 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) FYVE PF01363.21 gi|282164032|ref|YP_003356417.1| - 0.58 10.3 8.2 39 4.5 8.2 2.2 1 1 0 1 1 1 0 FYVE zinc finger zf-piccolo PF05715.13 gi|282164032|ref|YP_003356417.1| - 0.59 10.3 6.7 1.5 9.1 6.7 1.7 1 1 0 1 1 1 0 Piccolo Zn-finger DUF2180 PF09947.9 gi|282164032|ref|YP_003356417.1| - 2.4 8.2 11.4 0.53 10.3 5.4 2.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) DUF4234 PF14018.6 gi|282164032|ref|YP_003356417.1| - 2.5 8.3 7.5 2.4 8.3 0.2 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4234) zf-B_box PF00643.24 gi|282164033|ref|YP_003356418.1| - 0.0001 22.4 2.0 0.0001 22.4 2.0 2.0 2 0 0 2 2 2 1 B-box zinc finger DUF4512 PF14975.6 gi|282164033|ref|YP_003356418.1| - 0.0071 17.1 0.1 0.0071 17.1 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4512) Fer2_3 PF13085.6 gi|282164033|ref|YP_003356418.1| - 0.083 12.9 0.2 0.086 12.9 0.2 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FYVE PF01363.21 gi|282164033|ref|YP_003356418.1| - 0.17 12.0 6.5 0.76 10.0 1.3 2.2 1 1 1 2 2 2 0 FYVE zinc finger DUF2180 PF09947.9 gi|282164033|ref|YP_003356418.1| - 0.27 11.2 7.7 0.26 11.3 2.2 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) FA_desaturase PF00487.24 gi|282164033|ref|YP_003356418.1| - 0.33 10.8 3.8 0.42 10.4 3.8 1.1 1 0 0 1 1 1 0 Fatty acid desaturase DUF2207 PF09972.9 gi|282164033|ref|YP_003356418.1| - 1.2 7.8 3.8 1.5 7.5 3.8 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) zf-piccolo PF05715.13 gi|282164033|ref|YP_003356418.1| - 1.3 9.3 9.6 34 4.7 9.5 2.3 1 1 1 2 2 2 0 Piccolo Zn-finger Yip1 PF04893.17 gi|282164034|ref|YP_003356419.1| - 4.3 7.0 20.0 0.36 10.5 4.3 2.1 1 1 1 2 2 2 0 Yip1 domain ABC2_membrane PF01061.24 gi|282164035|ref|YP_003356420.1| - 3.9e-36 124.4 16.7 3.9e-36 124.4 16.7 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|282164035|ref|YP_003356420.1| - 4.1e-10 39.3 15.5 4.1e-10 39.3 15.5 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF4131 PF13567.6 gi|282164035|ref|YP_003356420.1| - 2.9 7.5 6.9 15 5.2 0.3 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) ABC_tran PF00005.27 gi|282164036|ref|YP_003356421.1| - 1.8e-31 109.4 0.0 2.6e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282164036|ref|YP_003356421.1| - 5.8e-17 62.5 0.2 1.5e-10 41.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|282164036|ref|YP_003356421.1| - 5.8e-08 33.3 0.0 1.5e-07 32.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|282164036|ref|YP_003356421.1| - 0.00097 19.7 0.1 0.0015 19.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|282164036|ref|YP_003356421.1| - 0.013 15.2 0.0 3.7 7.2 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|282164036|ref|YP_003356421.1| - 0.033 14.6 0.2 0.36 11.3 0.2 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|282164036|ref|YP_003356421.1| - 0.036 14.2 0.0 0.1 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|282164036|ref|YP_003356421.1| - 0.047 13.1 0.0 1 8.8 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282164036|ref|YP_003356421.1| - 0.056 13.2 0.4 0.11 12.2 0.4 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|282164036|ref|YP_003356421.1| - 0.058 13.8 0.0 0.11 12.8 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain CLP1_P PF16575.5 gi|282164036|ref|YP_003356421.1| - 0.071 12.9 0.0 0.23 11.2 0.0 1.8 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 gi|282164036|ref|YP_003356421.1| - 0.093 12.4 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|282164036|ref|YP_003356421.1| - 0.13 12.3 0.0 0.52 10.4 0.0 2.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase cobW PF02492.19 gi|282164036|ref|YP_003356421.1| - 0.14 11.8 0.1 0.25 10.9 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|282164036|ref|YP_003356421.1| - 0.15 11.8 0.0 1.7 8.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain LigD_N PF13298.6 gi|282164036|ref|YP_003356421.1| - 0.18 12.1 0.0 0.72 10.2 0.0 1.9 2 0 0 2 2 2 0 DNA polymerase Ligase (LigD) DeoC PF01791.9 gi|282164037|ref|YP_003356422.1| - 4.5e-50 170.5 0.1 5.2e-50 170.3 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|282164037|ref|YP_003356422.1| - 0.0077 15.8 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family His_biosynth PF00977.21 gi|282164037|ref|YP_003356422.1| - 0.076 12.5 0.0 0.16 11.4 0.0 1.6 1 0 0 1 1 1 0 Histidine biosynthesis protein Pyridox_ox_2 PF12900.7 gi|282164038|ref|YP_003356423.1| - 1.6e-18 67.0 0.0 2.1e-18 66.7 0.0 1.3 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|282164038|ref|YP_003356423.1| - 3.1e-05 24.1 0.0 4.5e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase EMC3_TMCO1 PF01956.16 gi|282164039|ref|YP_003356424.1| - 0.37 10.5 1.4 0.38 10.5 1.4 1.0 1 0 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like E1-E2_ATPase PF00122.20 gi|282164040|ref|YP_003356425.1| - 8.2e-55 185.1 0.8 8.2e-55 185.1 0.8 2.3 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|282164040|ref|YP_003356425.1| - 1.6e-42 146.2 2.3 2.6e-42 145.5 2.3 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|282164040|ref|YP_003356425.1| - 3.7e-22 78.5 0.8 1.5e-12 47.7 0.1 2.9 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|282164040|ref|YP_003356425.1| - 0.0015 18.3 1.1 0.019 14.7 1.4 2.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|282164040|ref|YP_003356425.1| - 0.0028 18.1 0.0 0.0054 17.2 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Glycos_transf_2 PF00535.26 gi|282164040|ref|YP_003356425.1| - 0.01 15.6 0.1 0.042 13.6 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase family 2 ZoocinA_TRD PF16775.5 gi|282164040|ref|YP_003356425.1| - 0.034 14.3 0.0 0.23 11.6 0.0 2.3 2 0 0 2 2 2 0 Target recognition domain of lytic exoenzyme Big_6 PF17936.1 gi|282164040|ref|YP_003356425.1| - 0.066 13.5 1.0 8.3 6.8 0.0 3.2 3 0 0 3 3 3 0 Bacterial Ig domain HTH_5 PF01022.20 gi|282164041|ref|YP_003356426.1| - 9.7e-20 70.2 0.3 1.5e-19 69.5 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|282164041|ref|YP_003356426.1| - 1.9e-09 37.4 0.0 2.6e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|282164041|ref|YP_003356426.1| - 0.0046 16.8 0.0 0.007 16.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|282164041|ref|YP_003356426.1| - 0.0061 16.3 0.1 0.02 14.7 0.1 1.9 1 1 0 1 1 1 1 Homeodomain-like domain CtIP_N PF10482.9 gi|282164041|ref|YP_003356426.1| - 0.031 14.3 0.0 0.061 13.4 0.0 1.4 1 0 0 1 1 1 0 Tumour-suppressor protein CtIP N-terminal domain HTH_34 PF13601.6 gi|282164041|ref|YP_003356426.1| - 0.031 14.5 0.0 0.047 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.6 gi|282164041|ref|YP_003356426.1| - 0.078 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|282164041|ref|YP_003356426.1| - 0.11 12.4 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit Arg_repressor PF01316.21 gi|282164041|ref|YP_003356426.1| - 0.12 12.1 0.1 0.27 11.0 0.1 1.5 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain Cro PF09048.10 gi|282164041|ref|YP_003356426.1| - 0.14 12.2 0.1 0.25 11.4 0.1 1.4 1 0 0 1 1 1 0 Cro TrmB PF01978.19 gi|282164041|ref|YP_003356426.1| - 0.17 11.8 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|282164042|ref|YP_003356427.1| - 0.00043 20.3 0.0 0.00082 19.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|282164042|ref|YP_003356427.1| - 0.00069 19.4 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|282164042|ref|YP_003356427.1| - 0.0048 16.8 0.3 0.011 15.7 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.6 gi|282164042|ref|YP_003356427.1| - 0.053 13.4 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|282164042|ref|YP_003356427.1| - 0.059 13.3 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 gi|282164042|ref|YP_003356427.1| - 0.086 12.7 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 MarR family ABC_tran PF00005.27 gi|282164043|ref|YP_003356428.1| - 1.3e-29 103.4 0.0 2.2e-29 102.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282164043|ref|YP_003356428.1| - 1.4e-13 51.3 2.1 1e-07 32.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system MobB PF03205.14 gi|282164043|ref|YP_003356428.1| - 0.00015 21.7 0.4 0.055 13.4 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B DUF4162 PF13732.6 gi|282164043|ref|YP_003356428.1| - 0.00053 20.6 0.0 0.0011 19.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|282164043|ref|YP_003356428.1| - 0.00063 20.2 0.0 0.038 14.4 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|282164043|ref|YP_003356428.1| - 0.0037 17.7 0.0 0.05 14.0 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|282164043|ref|YP_003356428.1| - 0.0049 16.9 0.1 2.2 8.3 0.0 2.8 2 1 1 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|282164043|ref|YP_003356428.1| - 0.0059 16.3 0.9 0.013 15.3 0.4 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain cobW PF02492.19 gi|282164043|ref|YP_003356428.1| - 0.0062 16.2 0.2 0.017 14.7 0.1 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.6 gi|282164043|ref|YP_003356428.1| - 0.011 16.3 0.3 0.025 15.1 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|282164043|ref|YP_003356428.1| - 0.012 15.4 0.1 0.03 14.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|282164043|ref|YP_003356428.1| - 0.013 15.6 0.0 0.03 14.4 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF463 PF04317.12 gi|282164043|ref|YP_003356428.1| - 0.045 12.7 0.1 1.4 7.7 0.0 2.1 2 0 0 2 2 2 0 YcjX-like family, DUF463 AAA_22 PF13401.6 gi|282164043|ref|YP_003356428.1| - 0.076 13.3 0.1 0.32 11.3 0.1 2.0 1 1 0 1 1 1 0 AAA domain Roc PF08477.13 gi|282164043|ref|YP_003356428.1| - 0.1 12.8 0.1 2.2 8.5 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase SMC_N PF02463.19 gi|282164043|ref|YP_003356428.1| - 0.12 11.8 0.1 4.5 6.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain RNA_helicase PF00910.22 gi|282164043|ref|YP_003356428.1| - 0.2 12.1 0.0 12 6.4 0.0 2.3 2 0 0 2 2 2 0 RNA helicase ABC2_membrane_2 PF12679.7 gi|282164044|ref|YP_003356429.1| - 3.2e-07 29.9 21.9 3.2e-07 29.9 21.9 2.2 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|282164044|ref|YP_003356429.1| - 2.1e-05 24.6 15.1 2.1e-05 24.6 15.1 2.1 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|282164044|ref|YP_003356429.1| - 3.9e-05 23.3 25.5 3.9e-05 23.3 25.5 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|282164044|ref|YP_003356429.1| - 0.001 18.3 29.2 0.0021 17.2 29.1 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein AAA_14 PF13173.6 gi|282164045|ref|YP_003356430.1| - 1.6e-34 118.7 0.0 3.4e-34 117.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|282164045|ref|YP_003356430.1| - 1.6e-12 47.6 0.0 2.5e-12 47.0 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|282164045|ref|YP_003356430.1| - 8.2e-06 25.9 0.1 0.00074 19.5 0.0 2.4 1 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|282164045|ref|YP_003356430.1| - 0.00014 22.3 0.0 0.00026 21.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|282164045|ref|YP_003356430.1| - 0.0011 19.6 0.0 0.0082 16.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|282164045|ref|YP_003356430.1| - 0.024 14.4 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.22 gi|282164045|ref|YP_003356430.1| - 0.072 12.3 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.29 gi|282164045|ref|YP_003356430.1| - 0.074 13.5 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|282164045|ref|YP_003356430.1| - 0.12 12.7 0.0 0.32 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain TrmB PF01978.19 gi|282164046|ref|YP_003356431.1| - 4e-17 61.9 0.0 6.9e-17 61.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|282164046|ref|YP_003356431.1| - 0.0015 18.5 0.0 0.0033 17.4 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Regulator_TrmB PF11495.8 gi|282164046|ref|YP_003356431.1| - 0.0022 17.2 0.0 0.0029 16.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.10 gi|282164046|ref|YP_003356431.1| - 0.0023 17.7 0.4 0.015 15.1 0.0 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain PLDc_2 PF13091.6 gi|282164046|ref|YP_003356431.1| - 0.0047 16.8 0.1 0.0086 16.0 0.1 1.6 1 1 0 1 1 1 1 PLD-like domain Penicillinase_R PF03965.16 gi|282164046|ref|YP_003356431.1| - 0.005 17.2 0.1 0.0094 16.3 0.1 1.4 1 0 0 1 1 1 1 Penicillinase repressor GntR PF00392.21 gi|282164046|ref|YP_003356431.1| - 0.072 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MFS_1 PF07690.16 gi|282164047|ref|YP_003356432.1| - 1.5e-69 234.6 79.2 3.5e-54 184.1 49.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|282164047|ref|YP_003356432.1| - 7.1e-09 35.0 14.6 7.1e-09 35.0 14.6 2.2 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|282164047|ref|YP_003356432.1| - 1e-05 24.6 34.8 0.00021 20.3 9.6 2.9 1 1 1 3 3 3 2 MFS_1 like family MFS_2 PF13347.6 gi|282164047|ref|YP_003356432.1| - 6.5e-05 21.7 49.9 0.011 14.4 13.0 2.8 1 1 1 2 2 2 2 MFS/sugar transport protein DUF5325 PF17259.2 gi|282164047|ref|YP_003356432.1| - 0.077 12.9 0.2 0.077 12.9 0.2 5.2 6 1 1 7 7 7 0 Family of unknown function (DUF5325) Tom6 PF17112.5 gi|282164047|ref|YP_003356432.1| - 0.12 11.9 0.2 0.12 11.9 0.2 2.4 2 0 0 2 2 2 0 Mitochondrial import receptor subunit Tom6, fungal FMN_red PF03358.15 gi|282164048|ref|YP_003356433.1| - 1.5e-24 86.5 0.1 5.2e-24 84.7 0.0 1.7 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|282164048|ref|YP_003356433.1| - 1.8e-14 53.9 0.0 2.9e-14 53.2 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Aldo_ket_red PF00248.21 gi|282164049|ref|YP_003356434.1| - 3.9e-39 134.6 0.0 6.5e-31 107.6 0.0 2.1 2 0 0 2 2 2 2 Aldo/keto reductase family Fer4_17 PF13534.6 gi|282164049|ref|YP_003356434.1| - 1.6e-11 44.6 6.2 3.5e-11 43.5 6.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282164049|ref|YP_003356434.1| - 7.9e-09 35.6 6.4 1.4e-08 34.7 6.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282164049|ref|YP_003356434.1| - 6.1e-05 23.4 5.3 0.00014 22.2 5.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282164049|ref|YP_003356434.1| - 6.4e-05 23.0 6.3 0.0035 17.4 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|282164049|ref|YP_003356434.1| - 0.0011 18.7 3.3 0.0014 18.3 0.2 2.1 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|282164049|ref|YP_003356434.1| - 0.0016 18.6 3.0 0.092 13.0 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282164049|ref|YP_003356434.1| - 0.0022 18.1 5.9 0.53 10.4 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282164049|ref|YP_003356434.1| - 0.0027 18.6 3.7 0.063 14.2 0.5 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|282164049|ref|YP_003356434.1| - 0.0091 15.8 1.8 0.0091 15.8 1.8 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282164049|ref|YP_003356434.1| - 0.014 15.4 2.0 0.014 15.4 2.0 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|282164049|ref|YP_003356434.1| - 0.03 15.1 2.7 1.2 10.0 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Sacchrp_dh_NADP PF03435.18 gi|282164049|ref|YP_003356434.1| - 0.049 13.9 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Fer4_2 PF12797.7 gi|282164049|ref|YP_003356434.1| - 0.53 10.5 16.2 0.078 13.1 2.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282164049|ref|YP_003356434.1| - 1.3 9.7 14.8 0.47 11.1 3.1 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282164049|ref|YP_003356434.1| - 1.7 9.3 13.9 0.42 11.2 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Flavodoxin_4 PF12682.7 gi|282164050|ref|YP_003356435.1| - 6e-24 84.5 0.1 6.8e-24 84.3 0.1 1.0 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|282164050|ref|YP_003356435.1| - 2.5e-07 30.5 0.0 0.0026 17.4 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|282164050|ref|YP_003356435.1| - 1.3e-05 25.5 0.0 0.0021 18.3 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain FMN_red PF03358.15 gi|282164050|ref|YP_003356435.1| - 0.003 17.3 0.0 0.0036 17.1 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase DUF2294 PF10057.9 gi|282164050|ref|YP_003356435.1| - 0.065 13.4 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) Flavodoxin_2 PF02525.17 gi|282164050|ref|YP_003356435.1| - 0.16 11.6 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin-like fold Flavodoxin_1 PF00258.25 gi|282164050|ref|YP_003356435.1| - 0.19 12.0 0.0 0.66 10.2 0.0 1.9 1 1 0 1 1 1 0 Flavodoxin HxlR PF01638.17 gi|282164051|ref|YP_003356436.1| - 4.9e-35 119.3 0.2 5.8e-35 119.0 0.2 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|282164051|ref|YP_003356436.1| - 0.00076 19.4 0.1 0.0014 18.6 0.1 1.5 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|282164051|ref|YP_003356436.1| - 0.0015 18.5 0.2 0.0024 17.8 0.2 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|282164051|ref|YP_003356436.1| - 0.0042 17.1 0.1 0.0066 16.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.10 gi|282164051|ref|YP_003356436.1| - 0.0042 17.0 0.1 0.0087 16.0 0.1 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_34 PF13601.6 gi|282164051|ref|YP_003356436.1| - 0.0042 17.2 0.0 0.0054 16.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|282164051|ref|YP_003356436.1| - 0.0083 16.1 0.0 0.027 14.4 0.0 1.7 1 1 1 2 2 2 1 Winged helix-turn-helix SlyX PF04102.12 gi|282164051|ref|YP_003356436.1| - 0.052 14.2 0.5 0.083 13.5 0.5 1.3 1 0 0 1 1 1 0 SlyX HTH_5 PF01022.20 gi|282164051|ref|YP_003356436.1| - 0.054 13.4 0.0 0.22 11.4 0.0 2.0 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family TBPIP PF07106.13 gi|282164051|ref|YP_003356436.1| - 0.059 13.3 0.0 0.17 11.9 0.0 1.7 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain DUF4423 PF14394.6 gi|282164051|ref|YP_003356436.1| - 0.077 12.7 0.0 0.085 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF488 PF04343.13 gi|282164053|ref|YP_003356438.1| - 0.035 14.7 0.0 0.045 14.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF488 Flavodoxin_3 PF12641.7 gi|282164054|ref|YP_003356439.1| - 7.3e-16 58.3 0.0 8.5e-15 54.8 0.0 2.0 2 0 0 2 2 2 1 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|282164054|ref|YP_003356439.1| - 7.3e-10 39.2 0.0 9e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|282164054|ref|YP_003356439.1| - 0.00036 20.8 0.4 0.0026 18.0 0.4 2.1 1 1 0 1 1 1 1 Flavodoxin MctB PF11382.8 gi|282164054|ref|YP_003356439.1| - 0.016 14.9 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Copper transport outer membrane protein, MctB PGM_PMM_II PF02879.16 gi|282164054|ref|YP_003356439.1| - 0.092 13.4 0.0 8.3 7.1 0.0 2.1 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RNB PF00773.19 gi|282164055|ref|YP_003356440.1| - 3.2e-73 246.9 0.0 3.8e-73 246.6 0.0 1.1 1 0 0 1 1 1 1 RNB domain RNase_II_C_S1 PF18614.1 gi|282164055|ref|YP_003356440.1| - 2.4e-16 59.4 3.3 5.6e-16 58.2 0.1 2.8 3 0 0 3 3 3 1 RNase II-type exonuclease C-terminal S1 domain S1 PF00575.23 gi|282164055|ref|YP_003356440.1| - 0.0033 17.7 0.8 1.3 9.4 0.1 3.8 3 1 0 3 3 3 1 S1 RNA binding domain Phage_tail_L PF05100.12 gi|282164055|ref|YP_003356440.1| - 0.08 12.2 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Phage minor tail protein L Lactamase_B PF00753.27 gi|282164056|ref|YP_003356441.1| - 8.6e-18 65.0 0.1 1.1e-17 64.7 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|282164056|ref|YP_003356441.1| - 0.0004 20.0 0.0 0.00049 19.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|282164056|ref|YP_003356441.1| - 0.012 15.6 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|282164056|ref|YP_003356441.1| - 0.16 11.4 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain PAS_4 PF08448.10 gi|282164057|ref|YP_003356442.1| - 2.6e-27 95.3 0.0 1.1e-19 70.7 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|282164057|ref|YP_003356442.1| - 1.5e-18 66.9 0.1 2.1e-14 53.6 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|282164057|ref|YP_003356442.1| - 3.2e-18 65.9 0.9 3e-09 37.1 0.1 3.8 4 1 1 5 5 5 2 PAS domain PAS PF00989.25 gi|282164057|ref|YP_003356442.1| - 7.4e-18 64.6 0.3 1.2e-08 35.0 0.1 3.3 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|282164057|ref|YP_003356442.1| - 1.1e-17 64.5 0.0 2.3e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|282164057|ref|YP_003356442.1| - 3.7e-13 49.2 0.4 2.9e-07 30.3 0.0 3.4 4 0 0 4 4 4 2 PAS domain HATPase_c_2 PF13581.6 gi|282164057|ref|YP_003356442.1| - 0.0011 18.9 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|282164057|ref|YP_003356442.1| - 0.004 17.3 0.3 1.3 9.2 0.0 3.4 2 1 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 gi|282164057|ref|YP_003356442.1| - 0.0098 15.8 0.0 0.028 14.3 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|282164057|ref|YP_003356442.1| - 0.073 12.9 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 gi|282164058|ref|YP_003356443.1| - 8.6e-27 94.5 1.1 8.6e-27 94.5 1.1 1.9 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 gi|282164058|ref|YP_003356443.1| - 1.3e-19 70.8 0.0 3.2e-19 69.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|282164058|ref|YP_003356443.1| - 1.8e-13 50.6 0.0 5.1e-13 49.1 0.0 1.9 1 0 0 1 1 1 1 PAS fold Cache_3-Cache_2 PF17201.4 gi|282164058|ref|YP_003356443.1| - 1e-07 31.6 1.4 2.2e-07 30.5 1.4 1.6 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain HAMP PF00672.25 gi|282164058|ref|YP_003356443.1| - 1.3e-06 28.6 0.0 4.9e-06 26.8 0.0 2.0 2 0 0 2 2 2 1 HAMP domain HATPase_c_2 PF13581.6 gi|282164058|ref|YP_003356443.1| - 3.8e-05 23.6 0.1 0.00011 22.1 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain sCache_3_2 PF17203.4 gi|282164058|ref|YP_003356443.1| - 4.7e-05 23.5 2.2 0.056 13.6 0.3 2.5 1 1 1 2 2 2 2 Single cache domain 3 sCache_3_3 PF17202.4 gi|282164058|ref|YP_003356443.1| - 0.00012 22.4 1.1 0.038 14.4 0.3 2.9 2 1 1 3 3 3 1 Single cache domain 3 PAS_9 PF13426.7 gi|282164058|ref|YP_003356443.1| - 0.003 17.8 0.1 0.081 13.2 0.0 3.2 3 0 0 3 3 3 1 PAS domain PAS_4 PF08448.10 gi|282164058|ref|YP_003356443.1| - 0.0041 17.3 0.1 0.09 13.0 0.0 2.9 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 gi|282164058|ref|YP_003356443.1| - 0.0045 16.9 0.0 0.014 15.3 0.0 1.8 1 0 0 1 1 1 1 GHKL domain dCache_2 PF08269.11 gi|282164058|ref|YP_003356443.1| - 0.0047 16.1 0.3 0.012 14.8 0.0 1.8 2 0 0 2 2 2 1 Cache domain PAS PF00989.25 gi|282164058|ref|YP_003356443.1| - 0.013 15.5 0.0 0.036 14.1 0.0 1.8 1 0 0 1 1 1 0 PAS fold YkyA PF10368.9 gi|282164058|ref|YP_003356443.1| - 0.046 13.4 2.3 0.11 12.2 2.3 1.6 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein HisKA PF00512.25 gi|282164058|ref|YP_003356443.1| - 0.16 12.1 0.3 0.5 10.4 0.3 1.9 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain Fer4 PF00037.27 gi|282164059|ref|YP_003356444.1| - 8.8e-09 34.8 15.1 1.3e-05 24.8 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282164059|ref|YP_003356444.1| - 1.6e-07 31.4 36.3 4e-05 23.7 15.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282164059|ref|YP_003356444.1| - 1.6e-07 32.1 11.3 0.00055 20.8 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|282164059|ref|YP_003356444.1| - 2.4e-07 30.8 8.7 4.2e-07 30.0 8.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282164059|ref|YP_003356444.1| - 7.3e-07 29.2 12.7 2.1e-06 27.7 12.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282164059|ref|YP_003356444.1| - 9.9e-07 29.3 14.0 3e-05 24.5 14.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282164059|ref|YP_003356444.1| - 4.9e-06 26.4 14.7 0.00037 20.4 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|282164059|ref|YP_003356444.1| - 1.1e-05 25.6 16.8 0.0084 16.6 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|282164059|ref|YP_003356444.1| - 0.00038 21.2 18.3 0.038 14.9 5.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282164059|ref|YP_003356444.1| - 0.00079 19.4 13.2 0.01 15.9 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282164059|ref|YP_003356444.1| - 0.0016 18.9 7.9 0.17 12.4 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282164059|ref|YP_003356444.1| - 0.024 15.1 16.5 0.2 12.1 3.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282164059|ref|YP_003356444.1| - 0.12 12.6 9.0 0.33 11.1 9.0 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|282164059|ref|YP_003356444.1| - 0.25 12.2 13.0 1.6 9.6 2.2 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282164059|ref|YP_003356444.1| - 0.92 10.1 13.5 3.7 8.1 3.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DUF5643 PF18705.1 gi|282164061|ref|YP_003356446.1| - 0.00094 19.1 0.2 0.0014 18.6 0.2 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5643) MFS_1 PF07690.16 gi|282164062|ref|YP_003356447.1| - 6.2e-57 193.1 45.2 6.2e-57 193.1 45.2 2.0 1 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|282164062|ref|YP_003356447.1| - 1.1e-09 37.7 16.0 1.1e-09 37.7 16.0 2.7 2 1 1 3 3 3 1 Sugar (and other) transporter MFS_2 PF13347.6 gi|282164062|ref|YP_003356447.1| - 9.2e-09 34.4 45.3 1.1e-05 24.3 18.5 3.1 1 1 1 3 3 3 2 MFS/sugar transport protein MFS_3 PF05977.13 gi|282164062|ref|YP_003356447.1| - 1.4e-05 23.7 4.8 1.4e-05 23.7 4.8 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.7 gi|282164062|ref|YP_003356447.1| - 0.0017 17.3 28.7 0.029 13.3 10.3 3.4 1 1 2 3 3 3 2 MFS_1 like family Peptidase_M29 PF02073.15 gi|282164063|ref|YP_003356448.1| - 2.7e-12 46.2 0.0 6.8e-10 38.3 0.0 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) MS_channel PF00924.18 gi|282164064|ref|YP_003356449.1| - 9.9e-39 133.0 0.8 9.9e-39 133.0 0.8 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel TrbC PF04956.13 gi|282164064|ref|YP_003356449.1| - 0.61 10.3 8.2 0.23 11.7 3.4 2.5 1 1 1 2 2 2 0 TrbC/VIRB2 family Flp_Fap PF04964.14 gi|282164064|ref|YP_003356449.1| - 3.5 7.5 6.8 14 5.6 0.5 2.6 2 0 0 2 2 2 0 Flp/Fap pilin component DUF2070 PF09843.9 gi|282164064|ref|YP_003356449.1| - 9.7 4.3 11.0 28 2.8 11.5 1.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) HEAT_2 PF13646.6 gi|282164065|ref|YP_003356450.1| - 1.3e-09 38.3 0.1 6.5e-08 32.9 0.3 2.2 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|282164065|ref|YP_003356450.1| - 1.4e-06 28.4 0.2 0.00018 21.8 0.2 3.2 3 0 0 3 3 3 1 PBS lyase HEAT-like repeat Tubulin PF00091.25 gi|282164066|ref|YP_003356451.1| - 2.9e-38 132.0 0.5 5.4e-38 131.2 0.5 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|282164066|ref|YP_003356451.1| - 4.8e-33 113.3 2.3 6.5e-33 112.9 0.2 2.3 2 1 0 2 2 2 1 FtsZ family, C-terminal domain Phage_integrase PF00589.22 gi|282164068|ref|YP_003356453.1| - 7e-25 87.8 0.0 1.1e-24 87.2 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family DUF2194 PF09960.9 gi|282164069|ref|YP_003356454.1| - 0.0032 15.9 0.5 0.0041 15.5 0.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2194) COQ7 PF03232.13 gi|282164069|ref|YP_003356454.1| - 0.011 15.5 0.0 0.55 10.0 0.0 2.1 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Inovirus_Gp2 PF11726.8 gi|282164069|ref|YP_003356454.1| - 0.25 11.2 2.8 13 5.7 2.8 2.6 1 1 0 1 1 1 0 Inovirus Gp2 Rad50_zn_hook PF04423.14 gi|282164069|ref|YP_003356454.1| - 0.27 11.1 3.6 8.5 6.3 0.3 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif FYVE PF01363.21 gi|282164070|ref|YP_003356455.1| - 0.011 15.8 0.2 0.014 15.6 0.2 1.2 1 0 0 1 1 1 0 FYVE zinc finger DUF5636 PF18686.1 gi|282164070|ref|YP_003356455.1| - 0.045 14.0 0.1 0.055 13.7 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5636) zf-B_box PF00643.24 gi|282164070|ref|YP_003356455.1| - 0.088 13.0 5.1 0.36 11.0 5.1 1.9 1 1 0 1 1 1 0 B-box zinc finger RecR PF02132.15 gi|282164070|ref|YP_003356455.1| - 1.4 8.5 6.4 2.3 7.8 0.5 2.7 3 0 0 3 3 3 0 RecR protein HXXEE PF13787.6 gi|282164071|ref|YP_003356456.1| - 5e-17 62.7 4.9 5e-17 62.7 4.9 2.5 3 0 0 3 3 3 1 Protein of unknown function with HXXEE motif HeH PF12949.7 gi|282164072|ref|YP_003356457.1| - 5.5e-05 22.8 0.1 0.00013 21.6 0.1 1.6 1 0 0 1 1 1 1 HeH/LEM domain SAP PF02037.27 gi|282164072|ref|YP_003356457.1| - 0.046 13.5 0.1 0.25 11.2 0.0 2.1 2 0 0 2 2 2 0 SAP domain MscL PF01741.18 gi|282164073|ref|YP_003356458.1| - 2.8e-22 79.3 8.2 3e-22 79.2 8.2 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL Saf_2TM PF18303.1 gi|282164073|ref|YP_003356458.1| - 0.016 14.8 2.6 0.018 14.6 2.6 1.1 1 0 0 1 1 1 0 SAVED-fused 2TM effector domain Fumarate_red_D PF02313.17 gi|282164073|ref|YP_003356458.1| - 0.083 13.0 4.7 0.13 12.4 4.4 1.4 1 1 0 1 1 1 0 Fumarate reductase subunit D Diphthamide_syn PF01866.17 gi|282164074|ref|YP_003356459.1| - 7.5e-81 271.9 0.0 9.3e-81 271.6 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein PIN7 PF18475.1 gi|282164074|ref|YP_003356459.1| - 0.11 13.1 0.0 0.25 12.0 0.0 1.6 1 0 0 1 1 1 0 PIN domain DUF2185 PF09951.9 gi|282164077|ref|YP_003356462.1| - 0.0032 17.2 0.0 0.0069 16.2 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2185) tRNA_int_endo PF01974.17 gi|282164078|ref|YP_003356463.1| - 6.1e-49 164.0 0.7 1.8e-24 85.6 0.2 2.3 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|282164078|ref|YP_003356463.1| - 7.4e-36 121.6 4.1 2e-18 65.8 0.8 2.8 3 0 0 3 3 3 2 tRNA intron endonuclease, N-terminal domain tRNA-synt_1b PF00579.25 gi|282164079|ref|YP_003356464.1| - 1.5e-23 83.6 0.0 3.2e-23 82.5 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.20 gi|282164080|ref|YP_003356465.1| - 1e-80 270.8 0.0 1.3e-80 270.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) PheRS_DBD3 PF18553.1 gi|282164080|ref|YP_003356465.1| - 6.6e-07 29.5 0.2 7.1e-06 26.2 0.1 2.7 3 0 0 3 3 3 1 PheRS DNA binding domain 3 tRNA-synt_2 PF00152.20 gi|282164080|ref|YP_003356465.1| - 0.00014 21.1 0.8 0.042 12.9 0.1 3.1 3 1 1 4 4 4 2 tRNA synthetases class II (D, K and N) tRNA_synthFbeta PF17759.1 gi|282164080|ref|YP_003356465.1| - 0.0023 17.4 0.0 0.051 13.0 0.0 2.2 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain DUF2582 PF10771.9 gi|282164080|ref|YP_003356465.1| - 0.0035 17.5 0.0 0.077 13.2 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix domain (DUF2582) tRNA_synthFbeta PF17759.1 gi|282164081|ref|YP_003356466.1| - 5e-45 153.6 0.0 8.4e-45 152.8 0.0 1.4 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|282164081|ref|YP_003356466.1| - 2.3e-18 66.3 0.6 3.7e-13 49.6 0.1 2.7 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|282164081|ref|YP_003356466.1| - 1.1e-13 51.2 0.0 1.8e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|282164081|ref|YP_003356466.1| - 1.7e-08 34.6 1.5 2.4e-06 27.6 0.3 3.9 3 2 0 3 3 3 1 Phe-tRNA synthetase beta subunit B1 domain Flavodoxin_1 PF00258.25 gi|282164082|ref|YP_003356467.1| - 2.1e-13 50.7 0.0 3e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|282164082|ref|YP_003356467.1| - 3.6e-08 33.8 0.0 5.2e-08 33.2 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.15 gi|282164082|ref|YP_003356467.1| - 8.3e-07 28.9 0.0 0.0014 18.4 0.0 2.1 1 1 1 2 2 2 2 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|282164082|ref|YP_003356467.1| - 5.4e-05 22.9 0.0 7.7e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain HATPase_c PF02518.26 gi|282164083|ref|YP_003356468.1| - 1e-19 71.1 0.0 5.5e-19 68.7 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|282164083|ref|YP_003356468.1| - 1.6e-16 60.3 0.1 8.1e-12 45.2 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|282164083|ref|YP_003356468.1| - 5.7e-16 58.6 0.2 5.9e-11 42.6 0.0 3.3 2 1 1 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|282164083|ref|YP_003356468.1| - 1.9e-09 37.7 0.0 6.7e-09 35.9 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|282164083|ref|YP_003356468.1| - 6.4e-09 36.0 0.0 0.0005 20.3 0.0 3.4 2 2 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|282164083|ref|YP_003356468.1| - 1.1e-08 34.9 0.0 6.8e-06 26.0 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|282164083|ref|YP_003356468.1| - 0.00043 20.2 0.0 0.00099 19.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PRESAN PF09687.10 gi|282164083|ref|YP_003356468.1| - 0.0022 18.5 1.6 0.039 14.5 1.0 2.8 3 0 0 3 3 3 1 Plasmodium RESA N-terminal HATPase_c_3 PF13589.6 gi|282164083|ref|YP_003356468.1| - 0.0041 16.9 0.0 0.0095 15.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PTRF_SDPR PF15237.6 gi|282164083|ref|YP_003356468.1| - 0.031 13.9 0.1 3.7 7.1 0.0 2.3 2 0 0 2 2 2 0 PTRF/SDPR family Flavodoxin_1 PF00258.25 gi|282164084|ref|YP_003356469.1| - 6e-15 55.7 0.1 7.6e-15 55.4 0.1 1.1 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|282164084|ref|YP_003356469.1| - 5.2e-10 39.7 0.0 6.4e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.15 gi|282164084|ref|YP_003356469.1| - 7e-08 32.4 0.1 0.00026 20.8 0.0 2.1 1 1 1 2 2 2 2 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|282164084|ref|YP_003356469.1| - 2.2e-05 24.2 0.0 3e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Cucumopine_C PF18631.1 gi|282164084|ref|YP_003356469.1| - 0.027 14.4 0.0 0.041 13.8 0.0 1.2 1 0 0 1 1 1 0 Cucumopine synthase C-terminal helical bundle domain Flavodoxin_2 PF02525.17 gi|282164084|ref|YP_003356469.1| - 0.036 13.8 0.0 0.43 10.3 0.0 2.5 1 1 0 1 1 1 0 Flavodoxin-like fold Peripla_BP_6 PF13458.6 gi|282164084|ref|YP_003356469.1| - 0.042 13.5 0.1 0.22 11.1 0.1 1.8 1 1 0 1 1 1 0 Periplasmic binding protein Dehydratase_MU PF02288.15 gi|282164084|ref|YP_003356469.1| - 0.15 12.0 0.0 5.1 7.0 0.0 2.2 2 0 0 2 2 2 0 Dehydratase medium subunit LSM PF01423.22 gi|282164085|ref|YP_003356470.1| - 1.8e-16 59.6 1.0 1.9e-16 59.5 1.0 1.0 1 0 0 1 1 1 1 LSM domain B-block_TFIIIC PF04182.12 gi|282164086|ref|YP_003356471.1| - 0.0001 22.4 0.0 0.00016 21.8 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|282164086|ref|YP_003356471.1| - 0.0052 16.3 0.2 0.0073 15.9 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|282164086|ref|YP_003356471.1| - 0.0052 16.7 0.0 0.0084 16.0 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|282164086|ref|YP_003356471.1| - 0.068 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.17 gi|282164086|ref|YP_003356471.1| - 0.074 12.9 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF87 PF01935.17 gi|282164087|ref|YP_003356472.1| - 4.3e-38 131.7 0.2 1.4e-37 130.0 0.2 1.9 2 0 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|282164087|ref|YP_003356472.1| - 4.6e-07 28.8 0.0 0.00015 20.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) ResIII PF04851.15 gi|282164087|ref|YP_003356472.1| - 7.8e-06 26.0 0.1 0.00012 22.1 0.1 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|282164087|ref|YP_003356472.1| - 0.00014 20.9 0.0 0.0081 15.1 0.0 2.5 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|282164087|ref|YP_003356472.1| - 0.00062 18.8 0.0 0.41 9.5 0.0 2.8 3 0 0 3 3 3 2 AAA-like domain Zot PF05707.12 gi|282164087|ref|YP_003356472.1| - 0.00072 19.2 0.0 0.0018 17.9 0.0 1.7 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) DEAD PF00270.29 gi|282164087|ref|YP_003356472.1| - 0.0035 17.1 0.0 1.7 8.4 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|282164087|ref|YP_003356472.1| - 0.0046 17.2 0.0 1 9.7 0.1 3.0 1 1 1 2 2 2 1 AAA domain T4SS-DNA_transf PF02534.14 gi|282164087|ref|YP_003356472.1| - 0.012 14.4 0.0 0.036 12.9 0.0 1.7 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer DUF3388 PF11868.8 gi|282164087|ref|YP_003356472.1| - 0.013 14.8 0.0 0.064 12.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3388) MeaB PF03308.16 gi|282164087|ref|YP_003356472.1| - 0.018 14.0 0.0 0.034 13.1 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Helicase_RecD PF05127.14 gi|282164087|ref|YP_003356472.1| - 0.02 14.8 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 Helicase FtsK_SpoIIIE PF01580.18 gi|282164087|ref|YP_003356472.1| - 0.058 12.7 0.1 0.19 11.0 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family SWI2_SNF2 PF18766.1 gi|282164087|ref|YP_003356472.1| - 0.1 12.3 0.0 1.6 8.4 0.0 2.2 2 0 0 2 2 2 0 SWI2/SNF2 ATPase DUF4231 PF14015.6 gi|282164090|ref|YP_003356475.1| - 0.82 10.2 6.0 2.8 8.5 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) NurA PF09376.10 gi|282164091|ref|YP_003356476.1| - 6e-18 65.4 0.0 1e-17 64.7 0.0 1.4 1 0 0 1 1 1 1 NurA domain SMC_N PF02463.19 gi|282164092|ref|YP_003356477.1| - 1.5e-19 70.3 14.4 6.6e-10 38.8 9.7 2.4 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|282164092|ref|YP_003356477.1| - 5.9e-15 56.3 10.4 5.9e-15 56.3 10.4 4.1 2 2 1 3 3 2 1 AAA domain AAA_21 PF13304.6 gi|282164092|ref|YP_003356477.1| - 3.5e-11 43.5 2.4 5.5e-08 33.0 0.1 2.7 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|282164092|ref|YP_003356477.1| - 5.2e-08 33.0 24.9 5.3e-07 29.7 12.3 2.8 2 1 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.6 gi|282164092|ref|YP_003356477.1| - 1.1e-05 25.6 0.2 3.9e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.27 gi|282164092|ref|YP_003356477.1| - 4.4e-05 24.0 8.6 0.14 12.7 0.0 4.4 3 2 0 3 3 3 2 ABC transporter AAA_29 PF13555.6 gi|282164092|ref|YP_003356477.1| - 9.5e-05 22.1 0.0 0.00019 21.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|282164092|ref|YP_003356477.1| - 0.0024 17.5 0.0 0.0024 17.5 0.0 3.6 3 1 0 3 3 3 1 AAA domain Spc7 PF08317.11 gi|282164092|ref|YP_003356477.1| - 0.032 13.1 52.8 0.045 12.6 11.5 4.5 2 2 3 5 5 5 0 Spc7 kinetochore protein Torsin PF06309.11 gi|282164092|ref|YP_003356477.1| - 0.076 13.1 0.1 0.29 11.2 0.0 2.1 2 0 0 2 2 1 0 Torsin Ribosomal_L10 PF00466.20 gi|282164092|ref|YP_003356477.1| - 0.08 13.1 3.8 1.3 9.3 0.1 3.9 3 1 0 3 3 3 0 Ribosomal protein L10 AAA_22 PF13401.6 gi|282164092|ref|YP_003356477.1| - 0.11 12.8 0.7 0.59 10.4 0.0 2.6 3 0 0 3 3 3 0 AAA domain MukB PF04310.12 gi|282164092|ref|YP_003356477.1| - 0.12 12.1 2.8 0.6 9.9 0.0 3.4 3 2 1 4 4 4 0 MukB N-terminal AAA_16 PF13191.6 gi|282164092|ref|YP_003356477.1| - 0.55 10.6 0.0 0.55 10.6 0.0 3.3 3 1 0 3 3 3 0 AAA ATPase domain Fib_alpha PF08702.10 gi|282164092|ref|YP_003356477.1| - 0.82 9.9 28.2 0.3 11.3 1.4 5.4 2 1 3 5 5 5 0 Fibrinogen alpha/beta chain family DUF5082 PF16888.5 gi|282164092|ref|YP_003356477.1| - 0.93 9.8 32.3 1.3 9.3 4.9 5.9 2 2 1 4 4 4 0 Domain of unknown function (DUF5082) NPV_P10 PF05531.12 gi|282164092|ref|YP_003356477.1| - 8.1 7.0 8.3 9.8 6.7 0.2 4.2 3 1 0 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF4407 PF14362.6 gi|282164092|ref|YP_003356477.1| - 8.2 5.7 30.9 48 3.2 8.9 3.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Metallophos PF00149.28 gi|282164093|ref|YP_003356478.1| - 1.8e-13 51.5 0.0 1.6e-12 48.3 0.0 2.1 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|282164093|ref|YP_003356478.1| - 3.9e-07 30.4 0.0 4.9e-06 26.8 0.0 2.5 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain HTH_27 PF13463.6 gi|282164094|ref|YP_003356479.1| - 0.00091 19.7 0.1 0.0031 18.0 0.0 2.0 3 0 0 3 3 3 1 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|282164094|ref|YP_003356479.1| - 0.0014 18.4 0.4 0.004 16.9 0.4 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|282164094|ref|YP_003356479.1| - 0.0035 17.3 0.1 0.0074 16.3 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HSBP1 PF06825.12 gi|282164094|ref|YP_003356479.1| - 0.0094 15.8 0.4 0.22 11.4 0.2 2.6 2 0 0 2 2 2 1 Heat shock factor binding protein 1 TA0956 PF11513.8 gi|282164094|ref|YP_003356479.1| - 0.0097 16.1 0.2 0.38 11.0 0.0 2.4 2 1 1 3 3 3 1 Thermoplasma acidophilum protein TA0956 DUF5344 PF17279.2 gi|282164094|ref|YP_003356479.1| - 0.029 14.9 0.3 0.16 12.6 0.1 2.2 3 0 0 3 3 3 0 Family of unknown function (DUF5344) PhoU_div PF01865.16 gi|282164094|ref|YP_003356479.1| - 0.071 12.4 0.0 0.094 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF47 DUF4164 PF13747.6 gi|282164094|ref|YP_003356479.1| - 0.11 12.8 4.8 0.77 10.1 3.8 2.6 1 1 0 2 2 2 0 Domain of unknown function (DUF4164) BPL_N PF09825.9 gi|282164095|ref|YP_003356480.1| - 0.0039 16.3 0.0 0.012 14.8 0.0 1.7 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal Glyco_hydro_42M PF08532.10 gi|282164095|ref|YP_003356480.1| - 0.08 12.4 0.0 0.13 11.7 0.0 1.3 1 1 0 1 1 1 0 Beta-galactosidase trimerisation domain GATase1_like PF07090.11 gi|282164095|ref|YP_003356480.1| - 0.19 11.1 0.0 0.68 9.3 0.0 1.7 2 0 0 2 2 2 0 Putative glutamine amidotransferase GAF_2 PF13185.6 gi|282164096|ref|YP_003356481.1| - 1.8e-20 73.7 0.0 3.2e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|282164096|ref|YP_003356481.1| - 2.9e-19 69.6 0.0 6.1e-19 68.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|282164096|ref|YP_003356481.1| - 0.00019 21.4 0.0 0.00041 20.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.26 gi|282164096|ref|YP_003356481.1| - 0.14 12.8 0.0 0.39 11.4 0.0 1.7 2 0 0 2 2 2 0 GAF domain HATPase_c_5 PF14501.6 gi|282164096|ref|YP_003356481.1| - 0.17 11.8 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 GHKL domain zf-ribbon_3 PF13248.6 gi|282164097|ref|YP_003356482.1| - 0.0053 16.1 1.5 2.6 7.6 0.1 2.6 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|282164097|ref|YP_003356482.1| - 4.5 7.7 11.0 4.5 7.7 1.8 2.8 3 0 0 3 3 3 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|282164097|ref|YP_003356482.1| - 5.5 7.1 8.2 7.1 6.7 0.1 2.5 2 1 0 2 2 2 0 Transposase zinc-ribbon domain FMN_red PF03358.15 gi|282164098|ref|YP_003356483.1| - 1.4e-36 125.6 0.0 1.9e-36 125.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|282164098|ref|YP_003356483.1| - 1.4e-08 34.7 0.0 1.6e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|282164098|ref|YP_003356483.1| - 0.038 14.2 0.0 0.24 11.6 0.0 2.1 1 1 1 2 2 2 0 Flavodoxin domain Acetyltransf_1 PF00583.25 gi|282164099|ref|YP_003356484.1| - 3.6e-13 49.8 0.0 7.5e-13 48.7 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|282164099|ref|YP_003356484.1| - 1.2e-12 47.9 0.0 2.3e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|282164099|ref|YP_003356484.1| - 6.7e-11 42.5 0.0 2.7e-10 40.5 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|282164099|ref|YP_003356484.1| - 0.0054 16.8 0.0 0.015 15.4 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|282164099|ref|YP_003356484.1| - 0.091 12.9 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|282164099|ref|YP_003356484.1| - 0.092 12.7 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein AIRS PF00586.24 gi|282164100|ref|YP_003356485.1| - 1.5e-19 70.4 0.5 2.4e-19 69.8 0.5 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|282164100|ref|YP_003356485.1| - 2.3e-08 34.3 0.0 4.4e-08 33.4 0.0 1.5 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain zf-C4pol PF14260.6 gi|282164101|ref|YP_003356486.1| - 0.008 16.6 2.3 0.031 14.7 2.3 2.1 1 1 0 1 1 1 1 C4-type zinc-finger of DNA polymerase delta zf-RING_4 PF14570.6 gi|282164101|ref|YP_003356486.1| - 0.038 13.8 4.4 0.86 9.4 1.5 2.6 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain zf_C2H2_13 PF18508.1 gi|282164101|ref|YP_003356486.1| - 0.12 12.0 7.5 1.1 8.9 0.0 3.6 4 0 0 4 4 4 0 Zinc finger domain DUF4428 PF14471.6 gi|282164101|ref|YP_003356486.1| - 0.18 11.8 7.2 0.2 11.6 0.3 2.8 1 1 2 3 3 2 0 Domain of unknown function (DUF4428) zf-BED PF02892.15 gi|282164101|ref|YP_003356486.1| - 3.4 7.7 0.0 3.4 7.7 0.0 3.0 2 1 1 3 3 3 0 BED zinc finger Cauli_DNA-bind PF03310.13 gi|282164102|ref|YP_003356487.1| - 0.072 13.2 0.3 0.88 9.7 0.3 2.1 1 1 0 1 1 1 0 Caulimovirus DNA-binding protein Polbeta PF18765.1 gi|282164103|ref|YP_003356488.1| - 6.2e-08 32.6 0.1 9.6e-08 32.0 0.1 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|282164103|ref|YP_003356488.1| - 2.7e-07 30.8 0.0 4.8e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_24 PF13412.6 gi|282164103|ref|YP_003356488.1| - 0.00012 21.6 0.1 0.00022 20.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|282164103|ref|YP_003356488.1| - 0.0008 19.3 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 MarR family DUF294 PF03445.13 gi|282164103|ref|YP_003356488.1| - 0.022 14.6 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HTH_IclR PF09339.10 gi|282164103|ref|YP_003356488.1| - 0.022 14.5 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|282164103|ref|YP_003356488.1| - 0.025 14.9 0.0 0.048 14.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 gi|282164103|ref|YP_003356488.1| - 0.039 13.8 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.19 gi|282164103|ref|YP_003356488.1| - 0.072 13.0 0.1 0.17 11.8 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|282164103|ref|YP_003356488.1| - 0.09 12.8 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DNA_pol_B PF00136.21 gi|282164104|ref|YP_003356489.1| - 2.4e-39 135.3 0.0 5.8e-39 134.1 0.0 1.5 1 1 0 1 1 1 1 DNA polymerase family B PAS_9 PF13426.7 gi|282164105|ref|YP_003356490.1| - 3.3e-45 152.6 2.5 3.9e-11 43.1 0.0 5.6 5 1 0 5 5 5 5 PAS domain PAS PF00989.25 gi|282164105|ref|YP_003356490.1| - 7.3e-43 145.2 0.1 2.3e-12 46.9 0.0 6.0 5 1 0 5 5 5 5 PAS fold PAS_4 PF08448.10 gi|282164105|ref|YP_003356490.1| - 8.4e-38 129.0 0.0 1.1e-13 51.4 0.0 5.2 5 0 0 5 5 5 4 PAS fold PAS_3 PF08447.12 gi|282164105|ref|YP_003356490.1| - 4.8e-32 110.1 0.2 1e-11 44.9 0.0 5.9 5 1 0 5 5 5 3 PAS fold PAS_8 PF13188.7 gi|282164105|ref|YP_003356490.1| - 2.3e-25 88.1 0.1 1.9e-06 27.7 0.0 5.4 5 0 0 5 5 5 4 PAS domain PAS_7 PF12860.7 gi|282164105|ref|YP_003356490.1| - 3.6e-08 33.6 2.3 4.7e-05 23.5 0.0 5.3 5 2 0 5 5 5 1 PAS fold PAS_12 PF18095.1 gi|282164105|ref|YP_003356490.1| - 2.5e-05 23.9 0.1 0.11 12.1 0.1 3.3 3 0 0 3 3 3 2 UPF0242 C-terminal PAS-like domain HTH_IclR PF09339.10 gi|282164105|ref|YP_003356490.1| - 0.00026 20.7 0.0 0.00052 19.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|282164105|ref|YP_003356490.1| - 0.00043 20.1 0.0 0.00092 19.1 0.0 1.5 1 0 0 1 1 1 1 MarR family PAS_11 PF14598.6 gi|282164105|ref|YP_003356490.1| - 0.0013 18.8 0.0 6 7.0 0.0 4.0 5 1 1 6 6 5 1 PAS domain TrmB PF01978.19 gi|282164105|ref|YP_003356490.1| - 0.0031 17.4 0.0 0.0083 16.0 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.6 gi|282164105|ref|YP_003356490.1| - 0.0049 17.3 0.2 0.18 12.3 0.0 3.4 3 0 0 3 3 3 1 Helix-turn-helix domain TBPIP PF07106.13 gi|282164105|ref|YP_003356490.1| - 0.0065 16.4 0.0 0.029 14.3 0.0 2.2 2 0 0 2 2 1 1 TBPIP/Hop2 winged helix domain Mnd1 PF03962.15 gi|282164105|ref|YP_003356490.1| - 0.026 14.8 0.0 0.35 11.2 0.0 2.8 3 0 0 3 3 2 0 Mnd1 HTH domain DUF977 PF06163.11 gi|282164105|ref|YP_003356490.1| - 0.026 14.4 0.0 0.062 13.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_45 PF14947.6 gi|282164105|ref|YP_003356490.1| - 0.028 14.4 0.0 0.083 12.9 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_5 PF01022.20 gi|282164105|ref|YP_003356490.1| - 0.032 14.1 0.0 0.14 12.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|282164105|ref|YP_003356490.1| - 0.071 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 gi|282164105|ref|YP_003356490.1| - 0.09 12.4 0.0 0.25 10.9 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding OmpH PF03938.14 gi|282164105|ref|YP_003356490.1| - 0.13 12.6 4.3 0.077 13.3 1.3 2.1 2 1 1 3 3 3 0 Outer membrane protein (OmpH-like) RPA_C PF08784.11 gi|282164105|ref|YP_003356490.1| - 0.18 12.5 0.0 0.53 11.0 0.0 1.8 1 0 0 1 1 1 0 Replication protein A C terminal Ion_trans PF00520.31 gi|282164106|ref|YP_003356491.1| - 1.3e-27 96.6 13.9 1.8e-27 96.2 13.9 1.0 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|282164106|ref|YP_003356491.1| - 4.2e-11 42.7 1.6 4.2e-11 42.7 1.6 2.4 2 0 0 2 2 2 1 Ion channel Peptidase_S8 PF00082.22 gi|282164107|ref|YP_003356492.1| - 4.3e-65 219.9 8.6 6e-65 219.4 8.6 1.2 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.16 gi|282164107|ref|YP_003356492.1| - 3.1e-06 27.7 0.8 7.2e-06 26.6 0.1 1.9 2 0 0 2 2 2 1 Peptidase inhibitor I9 RHH_1 PF01402.21 gi|282164108|ref|YP_003356493.1| - 0.0024 17.8 0.0 0.0033 17.3 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|282164108|ref|YP_003356493.1| - 0.013 15.6 0.0 0.013 15.6 0.0 1.0 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 gi|282164108|ref|YP_003356493.1| - 0.041 13.8 0.0 0.041 13.8 0.0 1.1 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Nitroreductase PF00881.24 gi|282164109|ref|YP_003356494.1| - 5.4e-24 85.1 0.3 3.3e-12 46.8 0.0 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|282164109|ref|YP_003356494.1| - 6.4e-17 61.8 4.0 3.1e-08 33.4 0.2 3.0 1 1 2 3 3 3 3 Putative TM nitroreductase Polysacc_synt_2 PF02719.15 gi|282164109|ref|YP_003356494.1| - 0.049 12.7 0.0 0.059 12.5 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|282164109|ref|YP_003356494.1| - 0.16 11.4 0.0 0.18 11.2 0.0 1.1 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ABC_tran PF00005.27 gi|282164110|ref|YP_003356495.1| - 2.7e-18 66.8 0.0 4.5e-18 66.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_15 PF13175.6 gi|282164110|ref|YP_003356495.1| - 6e-07 29.5 0.0 8.3e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|282164110|ref|YP_003356495.1| - 1.7e-06 28.0 0.0 2.4e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_24 PF13479.6 gi|282164110|ref|YP_003356495.1| - 6.4e-05 22.8 0.0 0.00035 20.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|282164110|ref|YP_003356495.1| - 8.5e-05 22.2 0.0 0.00017 21.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|282164110|ref|YP_003356495.1| - 0.00012 21.6 0.2 0.00076 19.0 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|282164110|ref|YP_003356495.1| - 0.00056 20.5 0.1 0.0013 19.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|282164110|ref|YP_003356495.1| - 0.00073 20.1 0.0 0.0033 18.0 0.0 2.0 1 1 1 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|282164110|ref|YP_003356495.1| - 0.0041 16.5 0.1 0.19 11.1 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_27 PF13514.6 gi|282164110|ref|YP_003356495.1| - 0.0042 16.7 0.0 0.0076 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|282164110|ref|YP_003356495.1| - 0.0092 15.9 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_30 PF13604.6 gi|282164110|ref|YP_003356495.1| - 0.01 15.6 0.0 0.026 14.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|282164110|ref|YP_003356495.1| - 0.036 13.8 0.8 0.61 9.8 0.0 2.4 2 1 0 2 2 2 0 Cytidylate kinase NTPase_1 PF03266.15 gi|282164110|ref|YP_003356495.1| - 0.059 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 NTPase Zeta_toxin PF06414.12 gi|282164110|ref|YP_003356495.1| - 0.09 12.0 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 gi|282164110|ref|YP_003356495.1| - 0.091 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|282164110|ref|YP_003356495.1| - 0.099 12.9 0.0 0.19 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|282164110|ref|YP_003356495.1| - 0.17 12.2 0.0 0.26 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain DS PF01916.17 gi|282164111|ref|YP_003356496.1| - 7.7e-101 337.1 0.0 8.7e-101 337.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Yae1_N PF09811.9 gi|282164112|ref|YP_003356497.1| - 0.057 13.1 0.5 14 5.5 0.1 3.0 3 0 0 3 3 3 0 Essential protein Yae1, N terminal HATPase_c PF02518.26 gi|282164113|ref|YP_003356498.1| - 9.6e-15 55.1 0.0 2.5e-14 53.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|282164113|ref|YP_003356498.1| - 3.7e-11 43.2 0.0 2.1e-06 27.9 0.0 2.9 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|282164113|ref|YP_003356498.1| - 6.3e-11 42.5 0.0 4.6e-06 26.8 0.0 3.4 3 1 0 3 3 3 2 PAS domain PAS PF00989.25 gi|282164113|ref|YP_003356498.1| - 7.6e-11 42.0 0.0 0.00043 20.2 0.0 3.4 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|282164113|ref|YP_003356498.1| - 1.4e-05 24.9 0.1 0.083 12.9 0.0 2.8 2 1 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|282164113|ref|YP_003356498.1| - 9.2e-05 22.4 0.0 0.00017 21.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|282164113|ref|YP_003356498.1| - 0.0011 18.6 0.0 0.0023 17.6 0.0 1.5 1 0 0 1 1 1 1 UPF0242 C-terminal PAS-like domain PAS_10 PF13596.6 gi|282164113|ref|YP_003356498.1| - 0.015 15.9 0.0 0.039 14.5 0.0 1.7 1 0 0 1 1 1 0 PAS domain PAS_7 PF12860.7 gi|282164113|ref|YP_003356498.1| - 0.037 14.2 0.0 0.8 9.9 0.0 2.8 3 0 0 3 3 3 0 PAS fold PAS_3 PF08447.12 gi|282164113|ref|YP_003356498.1| - 0.15 12.4 0.1 0.92 9.8 0.0 2.3 2 1 0 2 2 2 0 PAS fold CheR PF01739.18 gi|282164114|ref|YP_003356499.1| - 3.5e-56 189.8 0.0 6e-56 189.0 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheB_methylest PF01339.17 gi|282164114|ref|YP_003356499.1| - 1.5e-48 164.8 0.0 3.8e-48 163.4 0.0 1.7 2 0 0 2 2 1 1 CheB methylesterase PAS_10 PF13596.6 gi|282164114|ref|YP_003356499.1| - 9.4e-30 103.3 1.1 2.7e-28 98.6 0.9 3.1 3 0 0 3 3 2 1 PAS domain CheR_N PF03705.15 gi|282164114|ref|YP_003356499.1| - 1e-15 57.1 0.2 2.2e-15 56.1 0.2 1.6 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain PAS_4 PF08448.10 gi|282164114|ref|YP_003356499.1| - 2e-09 37.7 0.0 0.012 15.8 0.0 4.0 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|282164114|ref|YP_003356499.1| - 4e-08 33.4 1.3 0.0015 18.7 0.5 3.3 3 0 0 3 3 2 2 PAS domain PAS PF00989.25 gi|282164114|ref|YP_003356499.1| - 5.4e-07 29.6 1.2 0.043 13.8 0.0 4.1 4 0 0 4 4 3 1 PAS fold Golgin_A5 PF09787.9 gi|282164114|ref|YP_003356499.1| - 0.00031 20.3 10.2 0.00068 19.2 10.2 1.5 1 0 0 1 1 1 1 Golgin subfamily A member 5 Fez1 PF06818.15 gi|282164114|ref|YP_003356499.1| - 0.0012 19.4 7.2 0.0024 18.4 7.2 1.5 1 0 0 1 1 1 1 Fez1 IL12 PF03039.14 gi|282164114|ref|YP_003356499.1| - 0.0013 18.1 1.4 0.0032 16.9 1.4 1.6 1 0 0 1 1 1 1 Interleukin-12 alpha subunit DUF3450 PF11932.8 gi|282164114|ref|YP_003356499.1| - 0.0015 17.9 10.7 0.0036 16.7 10.7 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) Rootletin PF15035.6 gi|282164114|ref|YP_003356499.1| - 0.003 17.6 11.6 0.0058 16.7 11.6 1.4 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion HMMR_N PF15905.5 gi|282164114|ref|YP_003356499.1| - 0.0046 16.5 13.9 0.011 15.3 13.9 1.5 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Spc7 PF08317.11 gi|282164114|ref|YP_003356499.1| - 0.0048 15.8 13.1 0.0048 15.8 13.1 1.8 2 0 0 2 2 2 1 Spc7 kinetochore protein PAS_8 PF13188.7 gi|282164114|ref|YP_003356499.1| - 0.0051 16.8 0.0 0.028 14.5 0.0 2.3 2 0 0 2 2 1 1 PAS domain DUF745 PF05335.13 gi|282164114|ref|YP_003356499.1| - 0.0055 16.4 9.5 0.0055 16.4 9.5 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF745) PAS_7 PF12860.7 gi|282164114|ref|YP_003356499.1| - 0.0064 16.7 2.6 9.4 6.4 0.0 4.2 4 0 0 4 4 3 0 PAS fold DUF812 PF05667.11 gi|282164114|ref|YP_003356499.1| - 0.0075 15.2 12.6 0.014 14.3 12.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Prominin PF05478.11 gi|282164114|ref|YP_003356499.1| - 0.011 13.7 8.0 0.017 13.1 8.0 1.3 1 0 0 1 1 1 0 Prominin KASH_CCD PF14662.6 gi|282164114|ref|YP_003356499.1| - 0.013 15.3 15.2 0.03 14.1 15.2 1.5 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Exonuc_VII_L PF02601.15 gi|282164114|ref|YP_003356499.1| - 0.013 15.1 4.7 0.025 14.2 4.7 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit Methyltransf_25 PF13649.6 gi|282164114|ref|YP_003356499.1| - 0.02 15.6 0.0 16 6.3 0.0 3.4 1 1 1 2 2 2 0 Methyltransferase domain FapA PF03961.13 gi|282164114|ref|YP_003356499.1| - 0.023 13.3 7.9 0.041 12.5 7.9 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A ATG16 PF08614.11 gi|282164114|ref|YP_003356499.1| - 0.026 14.8 15.8 0.047 13.9 15.8 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) UPF0242 PF06785.11 gi|282164114|ref|YP_003356499.1| - 0.043 13.9 12.8 0.095 12.8 12.8 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus CENP-F_leu_zip PF10473.9 gi|282164114|ref|YP_003356499.1| - 0.06 13.4 17.1 0.16 12.0 17.1 1.6 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Lebercilin PF15619.6 gi|282164114|ref|YP_003356499.1| - 0.088 12.5 17.2 0.61 9.7 17.2 2.3 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Med30 PF11315.8 gi|282164114|ref|YP_003356499.1| - 0.097 12.9 6.3 0.39 10.9 6.3 2.1 1 0 0 1 1 1 0 Mediator complex subunit 30 Syntaxin-6_N PF09177.11 gi|282164114|ref|YP_003356499.1| - 0.13 12.8 18.8 2.2 8.9 8.6 4.1 4 1 1 5 5 3 0 Syntaxin 6, N-terminal Atg14 PF10186.9 gi|282164114|ref|YP_003356499.1| - 0.14 11.2 7.0 0.26 10.3 7.0 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4061 PF13270.6 gi|282164114|ref|YP_003356499.1| - 0.16 12.3 8.6 0.49 10.7 8.6 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4061) LMBR1 PF04791.16 gi|282164114|ref|YP_003356499.1| - 0.16 10.8 7.9 0.28 10.0 7.9 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF3552 PF12072.8 gi|282164114|ref|YP_003356499.1| - 0.2 11.1 11.7 0.39 10.1 11.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DUF1664 PF07889.12 gi|282164114|ref|YP_003356499.1| - 0.21 11.6 12.6 0.097 12.7 8.0 2.8 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) RPW8 PF05659.11 gi|282164114|ref|YP_003356499.1| - 0.21 11.3 8.9 0.1 12.3 4.4 2.8 3 1 0 3 3 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 WXG100 PF06013.12 gi|282164114|ref|YP_003356499.1| - 0.24 11.7 8.3 0.63 10.3 6.5 2.7 2 1 0 2 2 1 0 Proteins of 100 residues with WXG HAP1_N PF04849.13 gi|282164114|ref|YP_003356499.1| - 0.3 10.3 17.1 0.58 9.3 16.3 1.8 2 0 0 2 2 2 0 HAP1 N-terminal conserved region HrpB7 PF09486.10 gi|282164114|ref|YP_003356499.1| - 0.33 11.3 7.5 3.3 8.1 0.1 2.6 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) TPR_MLP1_2 PF07926.12 gi|282164114|ref|YP_003356499.1| - 0.33 11.0 19.9 0.045 13.8 15.0 2.1 2 0 0 2 2 1 0 TPR/MLP1/MLP2-like protein IFT57 PF10498.9 gi|282164114|ref|YP_003356499.1| - 0.34 9.8 14.4 0.5 9.3 13.1 1.9 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 ADIP PF11559.8 gi|282164114|ref|YP_003356499.1| - 0.37 10.8 14.6 1 9.4 14.6 1.8 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Flagellin_N PF00669.20 gi|282164114|ref|YP_003356499.1| - 0.39 10.8 10.3 1.2 9.3 10.2 1.9 1 1 0 1 1 1 0 Bacterial flagellin N-terminal helical region HIP1_clath_bdg PF16515.5 gi|282164114|ref|YP_003356499.1| - 0.39 11.3 18.7 0.32 11.6 15.7 2.4 2 0 0 2 2 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Prefoldin_3 PF13758.6 gi|282164114|ref|YP_003356499.1| - 0.49 10.5 7.2 37 4.4 7.2 2.9 1 1 0 1 1 1 0 Prefoldin subunit OmpH PF03938.14 gi|282164114|ref|YP_003356499.1| - 0.6 10.4 15.4 0.096 13.0 10.0 2.5 3 0 0 3 3 1 0 Outer membrane protein (OmpH-like) HAUS-augmin3 PF14932.6 gi|282164114|ref|YP_003356499.1| - 0.62 9.6 14.0 1.3 8.5 14.0 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 KxDL PF10241.9 gi|282164114|ref|YP_003356499.1| - 0.94 9.8 14.9 2.9 8.2 6.1 2.8 1 1 1 2 2 2 0 Uncharacterized conserved protein DUF2203 PF09969.9 gi|282164114|ref|YP_003356499.1| - 1.1 10.0 6.5 1.7 9.3 5.0 2.2 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2203) Seryl_tRNA_N PF02403.22 gi|282164114|ref|YP_003356499.1| - 1.7 8.9 14.2 2.7 8.3 9.9 3.4 3 0 0 3 3 2 0 Seryl-tRNA synthetase N-terminal domain TMPIT PF07851.13 gi|282164114|ref|YP_003356499.1| - 1.9 7.6 8.7 4.1 6.5 8.7 1.5 1 0 0 1 1 1 0 TMPIT-like protein Fzo_mitofusin PF04799.13 gi|282164114|ref|YP_003356499.1| - 2.4 7.7 8.3 5.7 6.5 8.3 1.7 1 0 0 1 1 1 0 fzo-like conserved region MIP-T3_C PF17749.1 gi|282164114|ref|YP_003356499.1| - 2.4 8.1 15.4 0.48 10.4 11.5 1.8 2 0 0 2 2 1 0 Microtubule-binding protein MIP-T3 C-terminal region Laminin_II PF06009.12 gi|282164114|ref|YP_003356499.1| - 3.4 7.7 14.0 4 7.5 10.2 2.8 1 1 0 2 2 2 0 Laminin Domain II MCC-bdg_PDZ PF10506.9 gi|282164114|ref|YP_003356499.1| - 3.7 7.7 10.4 1.8 8.6 2.6 3.0 1 1 1 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome zf-C4H2 PF10146.9 gi|282164114|ref|YP_003356499.1| - 3.7 7.8 15.2 0.54 10.5 10.5 1.9 2 0 0 2 2 1 0 Zinc finger-containing protein PCRF PF03462.18 gi|282164114|ref|YP_003356499.1| - 4.3 7.2 12.3 4.7 7.0 10.0 2.1 2 0 0 2 2 2 0 PCRF domain YtxH PF12732.7 gi|282164114|ref|YP_003356499.1| - 5.1 7.7 7.4 2.1 8.9 3.0 2.7 3 1 0 3 3 1 0 YtxH-like protein GAS PF13851.6 gi|282164114|ref|YP_003356499.1| - 6 6.2 20.1 2.1 7.7 15.6 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding TSNAXIP1_N PF15739.5 gi|282164114|ref|YP_003356499.1| - 6.9 7.1 13.3 16 6.0 1.1 2.5 1 1 1 2 2 2 0 Translin-associated factor X-interacting N-terminus PRKG1_interact PF15898.5 gi|282164114|ref|YP_003356499.1| - 7 7.6 18.6 21 6.1 18.0 2.1 2 0 0 2 2 1 0 cGMP-dependent protein kinase interacting domain LCIB_C_CA PF18599.1 gi|282164114|ref|YP_003356499.1| - 7.5 5.8 6.6 28 3.9 0.0 2.8 2 1 0 2 2 2 0 Limiting CO2-inducible proteins B/C beta carbonyic anhydrases FAM76 PF16046.5 gi|282164114|ref|YP_003356499.1| - 9 5.6 9.7 16 4.7 9.7 1.3 1 0 0 1 1 1 0 FAM76 protein EMP24_GP25L PF01105.24 gi|282164114|ref|YP_003356499.1| - 9.7 6.1 11.1 2 8.3 5.0 2.5 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD NucS PF01939.16 gi|282164115|ref|YP_003356500.1| - 2.5e-61 207.0 0.2 2.8e-61 206.8 0.2 1.0 1 0 0 1 1 1 1 Endonuclease NucS Cas_Cas4 PF01930.17 gi|282164115|ref|YP_003356500.1| - 0.00025 21.2 0.2 0.00058 20.0 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_9 PF08011.11 gi|282164115|ref|YP_003356500.1| - 0.00037 20.4 0.1 0.0013 18.6 0.0 1.9 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UPF0102 PF02021.17 gi|282164115|ref|YP_003356500.1| - 0.0025 18.0 0.2 0.0074 16.5 0.1 1.8 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 SfsA PF03749.13 gi|282164115|ref|YP_003356500.1| - 0.0096 15.8 0.1 0.032 14.1 0.1 1.8 2 0 0 2 2 2 1 Sugar fermentation stimulation protein RE domain PDDEXK_4 PF14281.6 gi|282164115|ref|YP_003356500.1| - 0.013 15.6 0.1 0.019 15.2 0.1 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF3883 PF13020.6 gi|282164115|ref|YP_003356500.1| - 0.022 14.8 0.4 0.81 9.8 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3883) YhcG_C PF06250.11 gi|282164115|ref|YP_003356500.1| - 0.075 12.9 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain DUF3431 PF11913.8 gi|282164115|ref|YP_003356500.1| - 0.087 12.6 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3431) CxC4 PF18717.1 gi|282164116|ref|YP_003356501.1| - 0.027 14.3 0.5 0.049 13.5 0.3 1.5 1 1 0 1 1 1 0 CxC4 like cysteine cluster associated with KDZ transposases DUF4796 PF16044.5 gi|282164116|ref|YP_003356501.1| - 0.061 12.9 0.4 0.076 12.6 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4796) Exonuc_VII_L PF02601.15 gi|282164116|ref|YP_003356501.1| - 0.1 12.2 1.4 0.12 11.9 1.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF357 PF04010.13 gi|282164117|ref|YP_003356502.1| - 0.00013 21.9 7.6 0.37 10.9 0.2 3.7 2 1 1 3 3 3 2 Protein of unknown function (DUF357) DNA_pol_D_N PF18018.1 gi|282164117|ref|YP_003356502.1| - 0.019 15.1 0.0 0.069 13.3 0.0 1.9 1 1 0 1 1 1 0 DNA polymerase delta subunit OB-fold domain TPR_2 PF07719.17 gi|282164117|ref|YP_003356502.1| - 0.079 13.1 0.1 0.079 13.1 0.1 3.9 3 1 1 4 4 4 0 Tetratricopeptide repeat PGF-CTERM PF18204.1 gi|282164117|ref|YP_003356502.1| - 1.4 9.0 4.0 2.8 8.1 4.0 1.5 1 0 0 1 1 1 0 PGF-CTERM motif SOR_SNZ PF01680.17 gi|282164118|ref|YP_003356503.1| - 3.5e-104 347.1 8.3 4.6e-104 346.7 8.3 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|282164118|ref|YP_003356503.1| - 1.5e-10 40.8 5.6 9.5e-08 31.6 0.4 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.14 gi|282164118|ref|YP_003356503.1| - 9e-05 21.7 1.4 0.011 14.9 0.1 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.17 gi|282164118|ref|YP_003356503.1| - 0.00096 18.3 0.6 0.82 8.7 0.1 2.4 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|282164118|ref|YP_003356503.1| - 0.003 17.0 4.0 0.0055 16.1 0.1 2.3 2 0 0 2 2 2 1 Nitronate monooxygenase TetR_C_27 PF17935.1 gi|282164118|ref|YP_003356503.1| - 0.0089 16.1 0.0 0.038 14.0 0.0 2.0 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain IGPS PF00218.21 gi|282164118|ref|YP_003356503.1| - 0.056 12.6 0.1 0.19 10.8 0.0 1.9 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase P_C10 PF14974.6 gi|282164118|ref|YP_003356503.1| - 0.1 12.7 0.1 0.62 10.2 0.0 2.3 2 0 0 2 2 2 0 Protein C10 Mut7-C PF01927.16 gi|282164119|ref|YP_003356504.1| - 1.7e-40 138.5 0.3 1.9e-40 138.3 0.3 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|282164119|ref|YP_003356504.1| - 1.2e-05 25.0 0.0 2.1e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_10 PF18478.1 gi|282164119|ref|YP_003356504.1| - 0.0059 16.8 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 PIN like domain zf-BED PF02892.15 gi|282164119|ref|YP_003356504.1| - 0.013 15.5 0.3 1 9.4 0.0 2.2 2 0 0 2 2 2 0 BED zinc finger CpXC PF14353.6 gi|282164119|ref|YP_003356504.1| - 0.013 15.5 0.7 0.031 14.3 0.7 1.6 1 0 0 1 1 1 0 CpXC protein TetR_C_24 PF17932.1 gi|282164119|ref|YP_003356504.1| - 0.021 15.1 0.1 0.051 13.8 0.1 1.7 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Rpr2 PF04032.16 gi|282164119|ref|YP_003356504.1| - 0.067 13.5 1.1 0.59 10.4 0.9 2.1 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain TcfC PF16967.5 gi|282164119|ref|YP_003356504.1| - 0.082 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 E-set like domain IBR PF01485.21 gi|282164119|ref|YP_003356504.1| - 0.094 13.0 0.4 0.15 12.3 0.4 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Pox_A3L PF05288.11 gi|282164119|ref|YP_003356504.1| - 0.098 12.7 0.1 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 Poxvirus A3L Protein ADK_lid PF05191.14 gi|282164119|ref|YP_003356504.1| - 0.1 12.6 0.3 0.81 9.7 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid MFS_1 PF07690.16 gi|282164120|ref|YP_003356505.1| - 4.5e-16 58.7 54.2 1e-15 57.5 42.7 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily PgaD PF13994.6 gi|282164120|ref|YP_003356505.1| - 0.043 13.9 5.6 0.046 13.8 2.0 2.7 2 1 0 2 2 2 0 PgaD-like protein DUF4579 PF15158.6 gi|282164120|ref|YP_003356505.1| - 3.2 7.5 7.6 9.5 5.9 0.9 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4579) HhH-GPD PF00730.25 gi|282164121|ref|YP_003356506.1| - 9.7e-22 77.5 0.0 1.7e-21 76.7 0.0 1.4 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|282164121|ref|YP_003356506.1| - 2e-07 30.5 0.2 7.5e-07 28.7 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|282164121|ref|YP_003356506.1| - 1.9e-05 25.2 0.1 0.042 14.4 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|282164121|ref|YP_003356506.1| - 0.0031 17.8 0.3 0.0031 17.8 0.3 2.0 2 0 0 2 2 2 1 Iron-sulfur binding domain of endonuclease III HHH_2 PF12826.7 gi|282164121|ref|YP_003356506.1| - 0.0081 16.2 0.0 0.17 12.0 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF2400 PF09674.10 gi|282164121|ref|YP_003356506.1| - 0.026 14.5 0.0 0.047 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) Aminotran_1_2 PF00155.21 gi|282164122|ref|YP_003356507.1| - 6.8e-61 206.4 0.0 7.7e-61 206.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|282164122|ref|YP_003356507.1| - 8.8e-08 31.1 0.0 1.3e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|282164122|ref|YP_003356507.1| - 4.1e-06 26.0 0.0 1e-05 24.7 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|282164122|ref|YP_003356507.1| - 0.0083 15.4 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|282164122|ref|YP_003356507.1| - 0.018 14.4 0.0 0.025 13.9 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DMRL_synthase PF00885.19 gi|282164123|ref|YP_003356508.1| - 8.1e-31 106.7 0.3 9.3e-31 106.5 0.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Metallophos_3 PF14582.6 gi|282164123|ref|YP_003356508.1| - 0.0077 15.6 3.0 0.41 9.9 0.1 2.9 1 1 2 3 3 3 3 Metallophosphoesterase, calcineurin superfamily DMRL_synthase PF00885.19 gi|282164124|ref|YP_003356509.1| - 4e-16 59.1 0.1 4.5e-16 59.0 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_5 PF00266.19 gi|282164125|ref|YP_003356510.1| - 3.7e-42 144.6 0.0 4.9e-42 144.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|282164125|ref|YP_003356510.1| - 0.0013 17.3 0.0 0.0019 16.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|282164125|ref|YP_003356510.1| - 0.0015 17.8 0.0 0.0026 17.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|282164125|ref|YP_003356510.1| - 0.0056 16.0 0.3 0.031 13.6 0.0 2.2 3 0 0 3 3 3 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_3 PF00202.21 gi|282164125|ref|YP_003356510.1| - 0.0061 15.3 0.1 0.14 10.8 0.0 2.3 2 0 0 2 2 2 1 Aminotransferase class-III tRNA-synt_2d PF01409.20 gi|282164127|ref|YP_003356512.1| - 1.6e-51 175.2 0.0 1e-47 162.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|282164127|ref|YP_003356512.1| - 4.8e-13 48.9 1.3 9.7e-13 48.0 1.3 1.6 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|282164127|ref|YP_003356512.1| - 1.4e-08 34.4 0.0 1.8e-06 27.5 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain Endonuclease_5 PF04493.14 gi|282164128|ref|YP_003356513.1| - 5.3e-62 209.0 0.0 6.9e-62 208.6 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V UvrC_HhH_N PF08459.11 gi|282164128|ref|YP_003356513.1| - 1.9e-05 24.6 0.0 4.3e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal DUF99 PF01949.16 gi|282164128|ref|YP_003356513.1| - 0.035 13.5 0.2 0.076 12.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF99 N_BRCA1_IG PF16158.5 gi|282164129|ref|YP_003356514.1| - 0.00012 22.7 0.3 0.00034 21.3 0.3 1.8 1 0 0 1 1 1 1 Ig-like domain from next to BRCA1 gene CARDB PF07705.11 gi|282164129|ref|YP_003356514.1| - 0.0025 18.1 0.1 0.0074 16.5 0.1 1.8 1 0 0 1 1 1 1 CARDB DUF11 PF01345.18 gi|282164129|ref|YP_003356514.1| - 0.034 14.5 0.5 0.11 12.8 0.5 1.8 1 0 0 1 1 1 0 Domain of unknown function DUF11 AFOR_N PF02730.15 gi|282164129|ref|YP_003356514.1| - 0.055 13.3 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF3244 PF11589.8 gi|282164129|ref|YP_003356514.1| - 0.071 13.2 0.1 12 6.1 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF3244) Aconitase_C PF00694.19 gi|282164130|ref|YP_003356515.1| - 2.7e-18 66.6 0.0 4.7e-18 65.8 0.0 1.5 2 0 0 2 2 2 1 Aconitase C-terminal domain Aconitase PF00330.20 gi|282164131|ref|YP_003356516.1| - 9.2e-94 315.0 3.7 1.5e-61 208.8 0.2 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|282164131|ref|YP_003356516.1| - 0.00022 20.1 0.0 0.00033 19.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) PhoH PF02562.16 gi|282164131|ref|YP_003356516.1| - 0.1 12.0 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DisA_N PF02457.16 gi|282164132|ref|YP_003356517.1| - 1.4e-24 85.9 0.1 3.7e-24 84.6 0.0 1.7 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding S-AdoMet_synt_C PF02773.16 gi|282164133|ref|YP_003356518.1| - 4.6e-70 234.0 0.3 1.5e-69 232.3 0.0 1.9 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.16 gi|282164133|ref|YP_003356518.1| - 1.3e-51 173.9 0.2 3.3e-51 172.6 0.0 1.8 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.20 gi|282164133|ref|YP_003356518.1| - 1.7e-43 147.3 1.5 3.9e-43 146.2 0.1 2.3 3 0 0 3 3 3 1 S-adenosylmethionine synthetase, N-terminal domain PDDEXK_3 PF13366.6 gi|282164134|ref|YP_003356519.1| - 1.2e-41 141.8 0.4 1.3e-41 141.6 0.4 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily RIO1 PF01163.22 gi|282164135|ref|YP_003356520.1| - 1.7e-45 155.0 0.1 2.4e-45 154.4 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|282164135|ref|YP_003356520.1| - 1.8e-25 88.9 0.2 3.6e-25 88.0 0.2 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|282164135|ref|YP_003356520.1| - 6.8e-08 32.7 0.2 0.00039 20.4 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|282164135|ref|YP_003356520.1| - 0.0044 16.4 0.0 0.01 15.2 0.0 1.7 1 1 0 1 1 1 1 Protein kinase domain HTH_20 PF12840.7 gi|282164135|ref|YP_003356520.1| - 0.012 15.7 0.0 0.083 13.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|282164135|ref|YP_003356520.1| - 0.022 15.1 0.0 0.061 13.7 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator DUF3135 PF11333.8 gi|282164135|ref|YP_003356520.1| - 0.03 14.6 0.0 0.054 13.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3135) HTH_36 PF13730.6 gi|282164135|ref|YP_003356520.1| - 0.034 14.1 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF5611 PF18446.1 gi|282164136|ref|YP_003356521.1| - 1.5e-33 115.7 1.9 1.7e-33 115.6 1.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) PAC2 PF09754.9 gi|282164137|ref|YP_003356522.1| - 1.5e-40 139.5 0.0 1.7e-40 139.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family LpxI_N PF17930.1 gi|282164137|ref|YP_003356522.1| - 0.031 14.2 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 LpxI N-terminal domain DUF4303 PF14136.6 gi|282164137|ref|YP_003356522.1| - 0.069 12.9 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4303) DUF473 PF04322.12 gi|282164138|ref|YP_003356523.1| - 5.2e-39 132.7 0.0 5.9e-39 132.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) GGACT PF06094.12 gi|282164139|ref|YP_003356524.1| - 3.7e-11 43.7 0.0 4.1e-11 43.5 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 gi|282164139|ref|YP_003356524.1| - 0.0025 18.2 0.0 0.0038 17.6 0.0 1.3 1 0 0 1 1 1 1 AIG2-like family Bac_luciferase PF00296.20 gi|282164140|ref|YP_003356525.1| - 5.2e-58 196.9 0.0 6.2e-58 196.7 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF2196 PF09962.9 gi|282164142|ref|YP_003356527.1| - 1.6e-33 114.5 2.5 1.7e-33 114.4 2.5 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) tRNA_SAD PF07973.14 gi|282164144|ref|YP_003356529.1| - 2.1e-10 40.6 1.7 4.5e-10 39.5 1.7 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|282164144|ref|YP_003356529.1| - 1.4e-09 38.5 0.3 2.6e-09 37.6 0.3 1.4 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2c PF01411.19 gi|282164144|ref|YP_003356529.1| - 3.8e-06 25.7 0.0 5.8e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) Lysine_decarbox PF03641.14 gi|282164145|ref|YP_003356530.1| - 1e-41 142.1 0.0 1.3e-41 141.8 0.0 1.1 1 0 0 1 1 1 1 Possible lysine decarboxylase LDcluster4 PF18306.1 gi|282164145|ref|YP_003356530.1| - 1.7e-17 63.5 0.1 2.2e-17 63.1 0.1 1.2 1 0 0 1 1 1 1 SLOG cluster4 family TPR_11 PF13414.6 gi|282164146|ref|YP_003356531.1| - 1.5e-64 213.4 16.7 3.3e-10 39.5 0.1 9.6 4 4 6 10 10 10 9 TPR repeat TPR_2 PF07719.17 gi|282164146|ref|YP_003356531.1| - 2.3e-51 167.8 10.7 2.3e-10 39.8 0.1 10.1 10 0 0 10 10 10 8 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164146|ref|YP_003356531.1| - 1.4e-46 156.9 6.4 6.6e-10 39.5 0.0 6.6 2 2 5 7 7 7 7 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282164146|ref|YP_003356531.1| - 1.7e-46 154.2 15.1 1.4e-11 43.7 0.4 9.5 10 0 0 10 10 9 7 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282164146|ref|YP_003356531.1| - 3.8e-43 142.8 10.8 3.2e-06 27.1 0.1 10.1 10 0 0 10 10 10 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282164146|ref|YP_003356531.1| - 1.3e-42 140.8 9.2 3.7e-05 24.2 0.2 9.4 1 1 9 10 10 10 9 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282164146|ref|YP_003356531.1| - 8.9e-41 138.2 20.2 3.3e-09 37.1 1.4 6.5 3 2 2 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164146|ref|YP_003356531.1| - 8.2e-39 128.6 14.5 1.5e-08 34.2 0.1 8.6 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282164146|ref|YP_003356531.1| - 1.7e-25 89.1 16.5 8.3e-08 32.4 0.1 7.4 2 2 5 7 7 7 6 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282164146|ref|YP_003356531.1| - 3.8e-25 86.0 4.0 0.00019 21.2 0.0 8.7 9 0 0 9 9 9 6 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282164146|ref|YP_003356531.1| - 6.5e-25 86.3 23.7 5.6e-07 29.2 0.0 8.3 8 0 0 8 8 8 5 Tetratricopeptide repeat TPR_20 PF14561.6 gi|282164146|ref|YP_003356531.1| - 8.6e-24 83.7 14.2 0.0003 21.0 0.0 6.1 4 1 2 6 6 6 6 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282164146|ref|YP_003356531.1| - 1.1e-21 76.0 11.8 0.00018 21.9 0.1 8.9 10 0 0 10 10 9 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282164146|ref|YP_003356531.1| - 5.8e-19 68.0 3.8 0.00027 21.0 0.1 5.9 1 1 7 8 8 8 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|282164146|ref|YP_003356531.1| - 3.6e-17 62.4 1.7 4e-06 27.0 0.1 5.2 1 1 5 7 7 7 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.6 gi|282164146|ref|YP_003356531.1| - 1.3e-13 50.8 4.6 3.8e-08 32.9 1.4 4.3 1 1 3 4 4 4 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|282164146|ref|YP_003356531.1| - 2.7e-11 43.0 4.5 0.28 11.9 0.4 6.8 7 0 0 7 7 7 2 Tetratricopeptide repeat BTAD PF03704.17 gi|282164146|ref|YP_003356531.1| - 2.8e-11 44.1 5.9 0.0022 18.4 0.7 5.5 1 1 6 7 7 7 2 Bacterial transcriptional activator domain TOM20_plant PF06552.12 gi|282164146|ref|YP_003356531.1| - 2e-09 37.4 6.1 1.4 8.6 0.1 7.2 2 2 5 8 8 8 2 Plant specific mitochondrial import receptor subunit TOM20 HrpB1_HrpK PF09613.10 gi|282164146|ref|YP_003356531.1| - 1.4e-08 34.4 0.3 0.18 11.4 0.0 4.3 3 2 1 4 4 4 2 Bacterial type III secretion protein (HrpB1_HrpK) PPR PF01535.20 gi|282164146|ref|YP_003356531.1| - 8e-08 32.0 8.4 0.037 14.3 0.1 6.3 7 0 0 7 7 5 2 PPR repeat Coatomer_E PF04733.14 gi|282164146|ref|YP_003356531.1| - 9.2e-08 31.8 6.1 3.3e-05 23.4 0.8 3.3 1 1 2 3 3 3 1 Coatomer epsilon subunit TPR_MalT PF17874.1 gi|282164146|ref|YP_003356531.1| - 1.9e-06 27.5 0.9 0.057 12.8 0.1 4.3 2 2 1 3 3 3 2 MalT-like TPR region TPR_21 PF09976.9 gi|282164146|ref|YP_003356531.1| - 2.3e-06 27.4 14.1 0.1 12.3 0.3 5.2 2 2 3 5 5 5 2 Tetratricopeptide repeat-like domain NARP1 PF12569.8 gi|282164146|ref|YP_003356531.1| - 2.6e-06 26.6 8.4 0.49 9.2 0.3 4.5 2 2 3 5 5 5 4 NMDA receptor-regulated protein 1 PknG_TPR PF16918.5 gi|282164146|ref|YP_003356531.1| - 3.7e-06 25.9 1.7 0.045 12.5 0.2 2.7 2 1 0 3 3 3 2 Protein kinase G tetratricopeptide repeat DUF627 PF04781.12 gi|282164146|ref|YP_003356531.1| - 2.6e-05 24.2 0.1 1.9 8.5 0.0 4.0 4 0 0 4 4 4 1 Protein of unknown function (DUF627) SHNi-TPR PF10516.9 gi|282164146|ref|YP_003356531.1| - 4.8e-05 22.7 1.3 1.4 8.5 0.0 5.3 6 0 0 6 6 6 1 SHNi-TPR TPR_3 PF07720.12 gi|282164146|ref|YP_003356531.1| - 5.6e-05 23.0 7.4 0.0078 16.2 0.3 5.9 7 0 0 7 7 7 1 Tetratricopeptide repeat PPR_2 PF13041.6 gi|282164146|ref|YP_003356531.1| - 0.00016 21.8 3.8 1.2 9.4 0.1 4.9 6 0 0 6 6 4 2 PPR repeat family Fis1_TPR_C PF14853.6 gi|282164146|ref|YP_003356531.1| - 0.00039 20.4 14.7 0.14 12.3 0.4 6.0 4 1 3 7 7 6 2 Fis1 C-terminal tetratricopeptide repeat ChAPs PF09295.10 gi|282164146|ref|YP_003356531.1| - 0.00048 19.2 0.1 0.09 11.8 0.0 3.1 2 2 1 3 3 3 1 ChAPs (Chs5p-Arf1p-binding proteins) TPPII_N PF12583.8 gi|282164146|ref|YP_003356531.1| - 0.00051 20.6 0.4 0.33 11.5 0.2 3.1 2 1 0 3 3 2 1 Tripeptidyl peptidase II N terminal RPN7 PF10602.9 gi|282164146|ref|YP_003356531.1| - 0.00077 19.2 9.4 0.079 12.7 0.2 5.1 2 2 4 6 6 6 2 26S proteasome subunit RPN7 DUF1474 PF07342.11 gi|282164146|ref|YP_003356531.1| - 0.0013 19.3 0.4 0.088 13.3 0.0 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF1474) Wzy_C_2 PF11846.8 gi|282164146|ref|YP_003356531.1| - 0.0023 17.9 3.9 1.1 9.2 0.1 3.4 2 2 1 3 3 3 1 Virulence factor membrane-bound polymerase, C-terminal DUF4810 PF16068.5 gi|282164146|ref|YP_003356531.1| - 0.0028 18.2 8.9 17 6.0 0.1 6.3 2 2 5 8 8 8 0 Domain of unknown function (DUF4810) DUF3856 PF12968.7 gi|282164146|ref|YP_003356531.1| - 0.0043 17.1 6.5 1.5 8.9 0.1 5.4 3 3 3 6 6 6 1 Domain of Unknown Function (DUF3856) T3SchapCesA PF11439.8 gi|282164146|ref|YP_003356531.1| - 0.0056 16.8 2.2 5.1 7.3 0.1 3.4 2 1 1 3 3 3 0 Type III secretion system filament chaperone CesA YfiO PF13525.6 gi|282164146|ref|YP_003356531.1| - 0.012 15.4 5.4 0.26 11.0 0.1 3.6 1 1 1 3 3 3 0 Outer membrane lipoprotein PPR_1 PF12854.7 gi|282164146|ref|YP_003356531.1| - 0.021 14.5 10.7 5.2 6.9 0.0 5.8 6 0 0 6 6 5 0 PPR repeat ANAPC5 PF12862.7 gi|282164146|ref|YP_003356531.1| - 0.023 14.8 6.6 62 3.8 0.1 4.8 2 2 3 5 5 5 0 Anaphase-promoting complex subunit 5 Optomotor-blind PF11078.8 gi|282164146|ref|YP_003356531.1| - 0.033 14.7 0.0 2.3 8.8 0.0 3.0 2 2 1 3 3 2 0 Optomotor-blind protein N-terminal region EcoEI_R_C PF08463.10 gi|282164146|ref|YP_003356531.1| - 0.054 13.6 0.7 1 9.4 0.0 3.2 2 2 1 3 3 3 0 EcoEI R protein C-terminal EST1_DNA_bind PF10373.9 gi|282164146|ref|YP_003356531.1| - 0.1 12.1 0.1 2.2 7.7 0.1 2.5 1 1 1 2 2 2 0 Est1 DNA/RNA binding domain Orthopox_A5L PF06193.11 gi|282164146|ref|YP_003356531.1| - 0.17 11.3 0.0 0.29 10.5 0.0 1.3 1 0 0 1 1 1 0 Orthopoxvirus A5L protein-like Sel1 PF08238.12 gi|282164146|ref|YP_003356531.1| - 0.17 12.6 7.8 6.8 7.5 0.2 5.7 6 0 0 6 6 5 0 Sel1 repeat ATP-synt_D PF01813.17 gi|282164146|ref|YP_003356531.1| - 0.25 11.1 2.8 5.7 6.7 0.1 3.4 2 2 2 4 4 4 0 ATP synthase subunit D DUF5113 PF17140.4 gi|282164146|ref|YP_003356531.1| - 0.4 10.5 3.2 1.9 8.3 0.2 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF5113) Prefoldin PF02996.17 gi|282164146|ref|YP_003356531.1| - 0.43 10.5 4.8 0.55 10.2 0.5 3.3 3 2 0 3 3 3 0 Prefoldin subunit MIT PF04212.18 gi|282164146|ref|YP_003356531.1| - 7.5 6.7 15.1 24 5.1 0.7 6.1 7 2 0 7 7 5 0 MIT (microtubule interacting and transport) domain Cupin_2 PF07883.11 gi|282164148|ref|YP_003356533.1| - 1.4e-10 40.7 0.0 2.4e-10 40.0 0.0 1.4 1 1 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|282164148|ref|YP_003356533.1| - 3.8e-05 23.6 0.0 4.6e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.7 gi|282164148|ref|YP_003356533.1| - 0.00072 19.3 0.0 0.00084 19.1 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|282164148|ref|YP_003356533.1| - 0.0013 18.3 0.0 0.0023 17.6 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|282164148|ref|YP_003356533.1| - 0.0035 16.9 0.0 0.0044 16.6 0.0 1.3 1 1 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|282164148|ref|YP_003356533.1| - 0.019 14.9 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Asp_Arg_Hydrox PF05118.15 gi|282164148|ref|YP_003356533.1| - 0.039 13.8 0.0 0.056 13.3 0.0 1.2 1 0 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase EutQ PF06249.12 gi|282164148|ref|YP_003356533.1| - 0.091 12.5 0.1 0.1 12.4 0.1 1.2 1 1 0 1 1 1 0 Ethanolamine utilisation protein EutQ Cpn10 PF00166.21 gi|282164148|ref|YP_003356533.1| - 0.097 12.7 0.1 0.24 11.5 0.0 1.7 1 1 1 2 2 2 0 Chaperonin 10 Kd subunit AraC_binding_2 PF14525.6 gi|282164148|ref|YP_003356533.1| - 0.13 11.9 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_8 PF13621.6 gi|282164148|ref|YP_003356533.1| - 0.16 11.7 0.0 0.64 9.7 0.0 1.8 1 1 1 2 2 2 0 Cupin-like domain MFS_1 PF07690.16 gi|282164149|ref|YP_003356534.1| - 3.7e-56 190.6 51.0 3.7e-56 190.6 51.0 2.4 2 1 0 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|282164149|ref|YP_003356534.1| - 1.6e-08 33.8 27.2 0.00013 20.9 0.5 2.7 2 1 0 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|282164149|ref|YP_003356534.1| - 2.9e-05 23.1 19.4 2.9e-05 23.1 19.4 3.9 2 1 0 3 3 3 1 Sugar (and other) transporter DUF2964 PF11177.8 gi|282164149|ref|YP_003356534.1| - 0.04 14.1 0.2 0.04 14.1 0.2 4.4 4 1 1 5 5 5 0 Protein of unknown function (DUF2964) MFS_2 PF13347.6 gi|282164149|ref|YP_003356534.1| - 0.22 10.0 57.9 0.46 9.0 32.6 3.5 1 1 0 2 2 2 0 MFS/sugar transport protein FAD_binding_3 PF01494.19 gi|282164150|ref|YP_003356535.1| - 1.3e-15 57.5 6.9 2.3e-11 43.5 2.9 3.0 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|282164150|ref|YP_003356535.1| - 9.8e-14 51.3 1.3 3.5e-10 39.5 0.1 2.6 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|282164150|ref|YP_003356535.1| - 3.1e-11 43.3 4.3 9.8e-11 41.6 4.3 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|282164150|ref|YP_003356535.1| - 3.1e-11 43.5 1.4 0.0001 22.0 0.9 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|282164150|ref|YP_003356535.1| - 1.8e-08 34.0 0.3 3.2e-08 33.2 0.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|282164150|ref|YP_003356535.1| - 1.8e-08 34.5 0.0 5e-08 33.0 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|282164150|ref|YP_003356535.1| - 2.2e-08 33.6 1.1 6.5e-07 28.8 0.4 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|282164150|ref|YP_003356535.1| - 8.1e-08 31.4 0.3 1.4e-07 30.6 0.3 1.4 1 0 0 1 1 1 1 HI0933-like protein Trp_halogenase PF04820.14 gi|282164150|ref|YP_003356535.1| - 1.6e-05 24.0 3.0 0.01 14.7 0.7 2.2 1 1 1 2 2 2 2 Tryptophan halogenase Thi4 PF01946.17 gi|282164150|ref|YP_003356535.1| - 4.7e-05 22.7 0.1 0.00012 21.4 0.1 1.6 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.12 gi|282164150|ref|YP_003356535.1| - 0.00014 21.1 0.5 0.00024 20.3 0.1 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|282164150|ref|YP_003356535.1| - 0.0012 18.2 0.3 0.0019 17.5 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|282164150|ref|YP_003356535.1| - 0.0072 16.9 1.6 0.04 14.5 0.4 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|282164150|ref|YP_003356535.1| - 0.011 15.1 0.6 0.026 13.8 0.6 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|282164150|ref|YP_003356535.1| - 0.018 14.9 5.0 0.046 13.6 0.2 2.5 3 0 0 3 3 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AIRC PF00731.20 gi|282164150|ref|YP_003356535.1| - 0.63 9.6 3.3 6.5 6.3 0.2 2.7 2 1 1 3 3 3 0 AIR carboxylase PPDK_N PF01326.19 gi|282164152|ref|YP_003356537.1| - 7.6e-95 317.9 0.1 1.4e-94 317.1 0.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|282164152|ref|YP_003356537.1| - 6.7e-22 77.0 0.1 1.5e-21 75.9 0.1 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Rhodanese PF00581.20 gi|282164153|ref|YP_003356538.1| - 9e-21 74.4 0.0 1.2e-20 74.0 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain Pentapeptide_4 PF13599.6 gi|282164155|ref|YP_003356540.1| - 1.4e-20 73.2 28.7 4.7e-09 36.3 0.8 3.9 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|282164155|ref|YP_003356540.1| - 1.3e-19 69.5 6.5 9.7e-06 25.1 0.4 5.4 1 1 5 6 6 6 6 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.6 gi|282164155|ref|YP_003356540.1| - 1.8e-10 40.8 3.3 0.00026 21.1 0.2 4.7 1 1 3 5 5 5 4 Pentapeptide repeats (9 copies) LRR_5 PF13306.6 gi|282164155|ref|YP_003356540.1| - 0.057 13.4 8.0 0.048 13.6 4.3 2.2 1 1 1 2 2 2 0 BspA type Leucine rich repeat region (6 copies) Phage_integrase PF00589.22 gi|282164156|ref|YP_003356541.1| - 8.4e-38 129.8 0.5 2.7e-37 128.2 0.5 1.8 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|282164156|ref|YP_003356541.1| - 3.1e-13 50.0 0.4 1.2e-12 48.1 0.4 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|282164156|ref|YP_003356541.1| - 2.3e-09 37.5 0.6 4.6e-09 36.5 0.6 1.5 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|282164156|ref|YP_003356541.1| - 9.2e-08 32.3 0.0 2.3e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.6 gi|282164156|ref|YP_003356541.1| - 0.0014 18.8 0.1 0.0034 17.6 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF3161 PF11362.8 gi|282164156|ref|YP_003356541.1| - 0.0069 16.3 0.1 0.024 14.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3161) DUF3435 PF11917.8 gi|282164156|ref|YP_003356541.1| - 0.016 14.2 0.2 0.19 10.6 0.1 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3435) Integrase_1 PF12835.7 gi|282164156|ref|YP_003356541.1| - 0.065 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Integrase CxxCxxCC PF03692.15 gi|282164157|ref|YP_003356542.1| - 3.1e-11 43.8 3.1 7e-11 42.7 3.1 1.7 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Transposase_mut PF00872.18 gi|282164158|ref|YP_003356543.1| - 2.1e-104 349.4 0.5 2.6e-104 349.1 0.5 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|282164158|ref|YP_003356543.1| - 0.0019 18.6 0.0 0.0053 17.2 0.0 1.8 1 0 0 1 1 1 1 MULE transposase domain Ins_allergen_rp PF06757.13 gi|282164158|ref|YP_003356543.1| - 0.046 13.7 0.0 0.098 12.6 0.0 1.5 1 0 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification DNase-RNase PF02577.14 gi|282164158|ref|YP_003356543.1| - 0.16 11.6 0.0 0.34 10.5 0.0 1.6 1 1 0 1 1 1 0 Bifunctional nuclease Radical_SAM_N PF08497.10 gi|282164159|ref|YP_003356544.1| - 4.1e-129 430.1 0.3 7.6e-129 429.2 0.0 1.6 2 0 0 2 2 2 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|282164159|ref|YP_003356544.1| - 2.8e-34 118.6 0.1 4.7e-34 117.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|282164159|ref|YP_003356544.1| - 1.3e-15 58.2 0.2 3.6e-15 56.7 0.2 1.7 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|282164159|ref|YP_003356544.1| - 0.17 11.9 0.0 6.4 6.8 0.0 2.7 2 0 0 2 2 2 0 B12 binding domain MS_channel PF00924.18 gi|282164160|ref|YP_003356545.1| - 7.3e-19 68.1 5.1 7.3e-19 68.1 5.1 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel RHSP PF07999.11 gi|282164160|ref|YP_003356545.1| - 0.078 11.8 1.6 0.13 11.0 1.6 1.3 1 0 0 1 1 1 0 Retrotransposon hot spot protein Yip1 PF04893.17 gi|282164160|ref|YP_003356545.1| - 0.087 12.5 10.3 0.16 11.7 10.3 1.4 1 1 0 1 1 1 0 Yip1 domain Promethin PF16015.5 gi|282164160|ref|YP_003356545.1| - 5.6 6.9 13.0 10 6.1 13.0 1.4 1 0 0 1 1 1 0 Promethin DUF2614 PF11023.8 gi|282164160|ref|YP_003356545.1| - 6 7.0 14.3 0.57 10.3 7.8 2.2 2 0 0 2 2 2 0 Zinc-ribbon containing domain AA_permease_2 PF13520.6 gi|282164161|ref|YP_003356546.1| - 5.3e-45 154.0 61.8 6.6e-45 153.7 61.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|282164161|ref|YP_003356546.1| - 2.1e-30 105.8 51.7 3.3e-30 105.1 51.7 1.3 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|282164161|ref|YP_003356546.1| - 0.00099 19.6 0.0 0.0017 18.9 0.0 1.4 1 0 0 1 1 1 1 Universal stress protein family OMPdecase PF00215.24 gi|282164163|ref|YP_003356548.1| - 2.9e-42 144.8 0.2 3.7e-42 144.4 0.2 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family FMN_dh PF01070.18 gi|282164163|ref|YP_003356548.1| - 0.023 13.7 2.2 0.029 13.4 2.2 1.3 1 1 0 1 1 1 0 FMN-dependent dehydrogenase NanE PF04131.14 gi|282164163|ref|YP_003356548.1| - 0.025 13.7 0.4 6 6.0 0.0 2.6 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.17 gi|282164163|ref|YP_003356548.1| - 0.045 13.2 0.1 0.2 11.1 0.0 1.9 1 1 1 2 2 2 0 PcrB family ThiG PF05690.14 gi|282164163|ref|YP_003356548.1| - 0.052 12.9 0.1 0.34 10.2 0.0 2.0 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG CLP1_P PF16575.5 gi|282164164|ref|YP_003356549.1| - 1.5e-24 86.8 0.0 2.1e-24 86.3 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_15 PF13175.6 gi|282164164|ref|YP_003356549.1| - 0.019 14.7 0.1 0.033 13.9 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|282164164|ref|YP_003356549.1| - 0.027 15.0 0.0 0.061 13.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_21 PF13304.6 gi|282164164|ref|YP_003356549.1| - 0.034 13.9 0.0 0.067 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|282164164|ref|YP_003356549.1| - 0.054 13.2 0.1 0.13 12.0 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|282164164|ref|YP_003356549.1| - 0.054 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase CoaE PF01121.20 gi|282164164|ref|YP_003356549.1| - 0.13 11.9 0.0 2.5 7.7 0.1 2.2 2 0 0 2 2 2 0 Dephospho-CoA kinase RsgA_GTPase PF03193.16 gi|282164164|ref|YP_003356549.1| - 0.15 12.0 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Peptidase_S49 PF01343.18 gi|282164165|ref|YP_003356550.1| - 3.1e-47 160.4 1.4 4.3e-47 159.9 1.4 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|282164165|ref|YP_003356550.1| - 3.9e-05 23.6 0.5 0.0025 17.7 0.2 2.3 2 0 0 2 2 2 2 Clp protease SDH_sah PF01972.16 gi|282164165|ref|YP_003356550.1| - 0.0012 18.0 0.1 0.0025 16.9 0.1 1.4 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Succ_CoA_lig PF13607.6 gi|282164165|ref|YP_003356550.1| - 0.027 14.3 0.2 0.054 13.3 0.2 1.5 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain Peptidase_M10 PF00413.24 gi|282164166|ref|YP_003356551.1| - 2.3e-06 27.5 0.3 9.3e-06 25.6 0.3 1.9 1 1 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.6 gi|282164166|ref|YP_003356551.1| - 0.055 13.6 0.4 0.18 11.9 0.4 1.7 1 1 0 1 1 1 0 Metallo-peptidase family M12 RHH_5 PF07878.11 gi|282164169|ref|YP_003356554.1| - 0.0002 21.2 0.1 0.00026 20.8 0.1 1.1 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 KGG PF10685.9 gi|282164170|ref|YP_003356555.1| - 8e-07 29.1 7.5 3.7e-06 27.0 0.1 2.7 3 0 0 3 3 3 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282164170|ref|YP_003356555.1| - 1.3e-05 25.6 3.3 1.3e-05 25.6 3.3 1.1 1 0 0 1 1 1 1 Small hydrophilic plant seed protein SASP PF00269.20 gi|282164170|ref|YP_003356555.1| - 0.00077 19.4 2.1 0.61 10.2 0.4 2.1 2 0 0 2 2 2 2 Small, acid-soluble spore proteins, alpha/beta type MC1 PF05854.11 gi|282164171|ref|YP_003356556.1| - 2.9e-31 107.6 0.2 4.8e-31 106.9 0.2 1.3 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Peptidase_MA_2 PF13485.6 gi|282164173|ref|YP_003356558.1| - 1.2e-05 25.2 0.2 1.7e-05 24.6 0.2 1.2 1 0 0 1 1 1 1 Peptidase MA superfamily DUF1570 PF07607.11 gi|282164173|ref|YP_003356558.1| - 0.0086 16.4 0.0 0.41 11.0 0.0 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF1570) Peptidase_M48 PF01435.18 gi|282164173|ref|YP_003356558.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M48 TFR_dimer PF04253.15 gi|282164173|ref|YP_003356558.1| - 0.12 12.5 0.2 0.5 10.5 0.0 2.0 2 0 0 2 2 2 0 Transferrin receptor-like dimerisation domain MTS PF05175.14 gi|282164174|ref|YP_003356559.1| - 2.6e-16 59.7 0.0 3.6e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|282164174|ref|YP_003356559.1| - 2.9e-12 46.6 0.2 4e-12 46.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|282164174|ref|YP_003356559.1| - 3.2e-10 40.6 0.0 5.6e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282164174|ref|YP_003356559.1| - 4.7e-09 36.2 0.1 6.8e-09 35.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|282164174|ref|YP_003356559.1| - 4.6e-08 33.0 1.9 5e-07 29.6 1.9 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|282164174|ref|YP_003356559.1| - 6.8e-06 26.6 0.1 1.4e-05 25.7 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|282164174|ref|YP_003356559.1| - 4.4e-05 23.1 0.1 6.3e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|282164174|ref|YP_003356559.1| - 0.00024 20.8 0.0 0.00043 20.0 0.0 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 95 DUF43 PF01861.16 gi|282164174|ref|YP_003356559.1| - 0.00028 20.2 0.0 0.00033 19.9 0.0 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Methyltransf_12 PF08242.12 gi|282164174|ref|YP_003356559.1| - 0.0015 19.3 0.1 0.0037 18.0 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282164174|ref|YP_003356559.1| - 0.0018 18.1 0.0 0.0023 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|282164174|ref|YP_003356559.1| - 0.012 15.3 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Nodulation protein S (NodS) AviRa PF11599.8 gi|282164174|ref|YP_003356559.1| - 0.02 14.3 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 RRNA methyltransferase AviRa PCMT PF01135.19 gi|282164174|ref|YP_003356559.1| - 0.055 13.2 0.0 0.082 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|282164174|ref|YP_003356559.1| - 0.063 13.3 0.0 0.095 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain N6_Mtase PF02384.16 gi|282164174|ref|YP_003356559.1| - 0.089 12.0 0.0 0.31 10.3 0.0 1.8 1 1 0 1 1 1 0 N-6 DNA Methylase ECR1_N PF14382.6 gi|282164175|ref|YP_003356560.1| - 9.6e-13 47.7 0.1 1.6e-12 47.0 0.1 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|282164175|ref|YP_003356560.1| - 1.3e-08 35.4 0.4 2.7e-08 34.4 0.4 1.5 1 1 0 1 1 1 1 Exosome component EXOSC1/CSL4 S1 PF00575.23 gi|282164175|ref|YP_003356560.1| - 0.00027 21.2 0.9 0.036 14.4 0.9 2.3 1 1 0 1 1 1 1 S1 RNA binding domain Zn_Tnp_IS91 PF14319.6 gi|282164175|ref|YP_003356560.1| - 0.012 15.6 0.1 0.018 15.1 0.1 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-TFIIB PF13453.6 gi|282164175|ref|YP_003356560.1| - 0.068 12.5 1.0 3.9 6.9 0.0 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger HypA PF01155.19 gi|282164175|ref|YP_003356560.1| - 0.073 13.1 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|282164175|ref|YP_003356560.1| - 0.11 12.4 1.6 0.17 11.9 1.6 1.2 1 0 0 1 1 1 0 zinc-ribbons NADH-G_4Fe-4S_3 PF10588.9 gi|282164175|ref|YP_003356560.1| - 0.11 12.0 1.7 1.4 8.5 0.2 2.4 2 1 0 2 2 2 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Auto_anti-p27 PF06677.12 gi|282164175|ref|YP_003356560.1| - 0.21 11.8 2.0 0.33 11.2 2.0 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.7 gi|282164175|ref|YP_003356560.1| - 0.22 11.6 4.0 0.41 10.7 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|282164175|ref|YP_003356560.1| - 0.27 11.0 2.4 0.99 9.2 0.0 2.2 1 1 1 2 2 2 0 InsA N-terminal domain RNA_pol_L_2 PF13656.6 gi|282164176|ref|YP_003356561.1| - 4.7e-24 84.0 0.0 6.2e-24 83.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|282164176|ref|YP_003356561.1| - 2.8e-08 33.1 0.0 6.7e-08 31.8 0.0 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF1079 PF06435.11 gi|282164176|ref|YP_003356561.1| - 0.14 12.3 1.7 0.51 10.6 0.8 2.2 2 0 0 2 2 2 0 Repeat of unknown function (DUF1079) Trm56 PF01994.16 gi|282164177|ref|YP_003356562.1| - 6.4e-49 164.8 0.0 7.8e-49 164.5 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 PrpR_N PF06506.11 gi|282164177|ref|YP_003356562.1| - 0.079 12.5 0.1 6 6.4 0.0 2.1 2 0 0 2 2 2 0 Propionate catabolism activator ATP-grasp_3 PF02655.14 gi|282164178|ref|YP_003356563.1| - 3.6e-38 131.1 0.0 5.1e-38 130.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|282164178|ref|YP_003356563.1| - 5e-08 32.8 0.0 1.3e-07 31.5 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.17 gi|282164178|ref|YP_003356563.1| - 0.03 13.8 0.0 2.9 7.3 0.0 2.2 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 gi|282164178|ref|YP_003356563.1| - 0.078 12.5 0.0 0.25 10.9 0.0 1.8 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus TFIIE_alpha PF02002.17 gi|282164179|ref|YP_003356564.1| - 1.1e-19 70.2 6.0 1.6e-19 69.7 6.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit Pep3_Vps18 PF05131.14 gi|282164179|ref|YP_003356564.1| - 0.03 14.1 0.2 0.047 13.5 0.2 1.3 1 0 0 1 1 1 0 Pep3/Vps18/deep orange family HD PF01966.22 gi|282164180|ref|YP_003356565.1| - 2.5e-19 69.7 2.8 5.9e-19 68.5 1.9 1.9 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 gi|282164180|ref|YP_003356565.1| - 0.00036 20.1 0.0 0.16 11.4 0.0 2.3 1 1 1 2 2 2 2 HDOD domain Ad_cyc_g-alpha PF08509.11 gi|282164181|ref|YP_003356566.1| - 0.093 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Adenylate cyclase G-alpha binding domain Nitroreductase PF00881.24 gi|282164182|ref|YP_003356567.1| - 1.8e-24 86.7 0.0 2.9e-24 86.0 0.0 1.4 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|282164182|ref|YP_003356567.1| - 5.9e-05 22.7 0.0 0.0036 16.9 0.1 2.8 2 1 1 3 3 3 2 Putative TM nitroreductase KdpD PF02702.17 gi|282164183|ref|YP_003356568.1| - 0.00076 19.0 0.9 0.001 18.6 0.9 1.1 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain ACT PF01842.25 gi|282164183|ref|YP_003356568.1| - 0.0089 15.8 0.3 0.042 13.6 0.2 2.2 1 1 1 2 2 2 1 ACT domain Nitroreductase PF00881.24 gi|282164184|ref|YP_003356569.1| - 3.8e-33 114.9 1.1 8.1e-16 58.5 0.1 2.1 2 0 0 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|282164184|ref|YP_003356569.1| - 2.9e-20 72.8 0.0 2e-19 70.0 0.0 2.6 1 1 0 1 1 1 1 Putative TM nitroreductase Radical_SAM PF04055.21 gi|282164185|ref|YP_003356570.1| - 5.4e-07 30.1 0.5 1.4e-06 28.8 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Rubredoxin PF00301.20 gi|282164185|ref|YP_003356570.1| - 0.15 12.1 2.2 1.9 8.6 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin DUF5591 PF17884.1 gi|282164186|ref|YP_003356571.1| - 4.8e-53 179.2 0.0 7.2e-53 178.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT PF01702.18 gi|282164186|ref|YP_003356571.1| - 6.8e-18 64.9 0.0 2e-17 63.4 0.0 1.6 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|282164186|ref|YP_003356571.1| - 2.8e-11 43.2 0.1 6e-11 42.2 0.1 1.5 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 gi|282164186|ref|YP_003356571.1| - 4.5e-08 33.1 0.0 1.1e-07 31.8 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase LEA_5 PF00477.17 gi|282164187|ref|YP_003356572.1| - 0.00026 21.4 7.3 0.00033 21.1 7.3 1.3 1 0 0 1 1 1 1 Small hydrophilic plant seed protein KGG PF10685.9 gi|282164187|ref|YP_003356572.1| - 0.00049 20.3 4.2 0.51 10.7 0.1 2.5 2 0 0 2 2 2 2 Stress-induced bacterial acidophilic repeat motif SASP PF00269.20 gi|282164187|ref|YP_003356572.1| - 0.042 13.9 8.6 0.37 10.8 1.3 2.1 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type CarboxypepD_reg PF13620.6 gi|282164188|ref|YP_003356573.1| - 2.7e-12 46.8 0.2 0.0084 16.4 0.0 3.6 3 1 0 3 3 3 3 Carboxypeptidase regulatory-like domain Dioxygenase_C PF00775.21 gi|282164188|ref|YP_003356573.1| - 2.3e-05 23.9 1.7 0.0002 20.8 0.3 2.2 2 0 0 2 2 2 1 Dioxygenase SdrD_B PF17210.3 gi|282164188|ref|YP_003356573.1| - 0.0012 19.1 0.2 0.75 10.0 0.0 2.7 2 1 0 2 2 2 2 SdrD B-like domain CarbopepD_reg_2 PF13715.6 gi|282164188|ref|YP_003356573.1| - 0.0017 18.3 0.4 0.73 9.9 0.0 3.0 3 1 1 4 4 4 2 CarboxypepD_reg-like domain DUF2271 PF10029.9 gi|282164188|ref|YP_003356573.1| - 0.0071 16.0 0.2 0.025 14.2 0.1 1.9 3 0 0 3 3 3 1 Predicted periplasmic protein (DUF2271) DUF2846 PF11008.8 gi|282164188|ref|YP_003356573.1| - 0.014 15.4 0.1 3.7 7.6 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2846) fn3_3 PF14686.6 gi|282164188|ref|YP_003356573.1| - 0.072 12.9 5.3 0.97 9.3 3.5 3.2 2 1 0 2 2 2 0 Polysaccharide lyase family 4, domain II Big_1 PF02369.16 gi|282164188|ref|YP_003356573.1| - 0.11 12.5 0.0 0.35 10.9 0.0 1.8 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) RPEL PF02755.15 gi|282164189|ref|YP_003356574.1| - 0.12 12.1 0.1 0.12 12.1 0.1 1.6 2 0 0 2 2 2 0 RPEL repeat GRAM PF02893.20 gi|282164192|ref|YP_003356577.1| - 0.17 11.8 0.1 0.29 11.0 0.1 1.3 1 0 0 1 1 1 0 GRAM domain DUF5623 PF18536.1 gi|282164192|ref|YP_003356577.1| - 5.4 7.3 6.0 3.7 7.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5623) PK PF00224.21 gi|282164194|ref|YP_003356579.1| - 6.6e-126 419.9 7.1 1.1e-125 419.2 7.1 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|282164194|ref|YP_003356579.1| - 2.7e-32 111.5 0.4 1.3e-31 109.2 0.1 2.4 3 0 0 3 3 3 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|282164194|ref|YP_003356579.1| - 1.7e-16 59.7 1.7 5.1e-16 58.2 0.5 2.5 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|282164194|ref|YP_003356579.1| - 0.00064 18.9 2.1 0.00064 18.9 2.1 1.8 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family DUF58 PF01882.18 gi|282164196|ref|YP_003356581.1| - 1.4e-20 73.3 0.0 3.3e-20 72.1 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 bMG10 PF17973.1 gi|282164196|ref|YP_003356581.1| - 0.17 12.1 0.0 1.3 9.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial Alpha-2-macroglobulin MG10 domain AAA_3 PF07726.11 gi|282164197|ref|YP_003356582.1| - 2.9e-61 205.1 0.0 8.8e-61 203.5 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|282164197|ref|YP_003356582.1| - 1.7e-18 66.2 0.0 3.2e-18 65.3 0.0 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|282164197|ref|YP_003356582.1| - 1e-12 48.2 0.0 2.1e-12 47.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|282164197|ref|YP_003356582.1| - 6.8e-06 25.9 0.0 8.2e-05 22.4 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|282164197|ref|YP_003356582.1| - 7.9e-06 25.1 0.0 1.6e-05 24.1 0.0 1.6 2 0 0 2 2 2 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|282164197|ref|YP_003356582.1| - 5.9e-05 22.5 0.8 0.015 14.7 0.3 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|282164197|ref|YP_003356582.1| - 0.00022 21.0 0.0 0.002 17.9 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|282164197|ref|YP_003356582.1| - 0.002 18.5 0.0 0.0076 16.7 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM_lid PF17855.1 gi|282164197|ref|YP_003356582.1| - 0.041 14.3 0.0 0.077 13.4 0.0 1.5 1 0 0 1 1 1 0 MCM AAA-lid domain stn_TNFRSF12A PF12191.8 gi|282164199|ref|YP_003356584.1| - 0.0012 19.1 0.0 0.0026 18.0 0.0 1.6 1 0 0 1 1 1 1 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain BatD PF13584.6 gi|282164199|ref|YP_003356584.1| - 0.0023 16.9 0.0 0.0034 16.3 0.0 1.2 1 0 0 1 1 1 1 Oxygen tolerance DUF4381 PF14316.6 gi|282164199|ref|YP_003356584.1| - 0.0043 17.3 0.3 0.0043 17.3 0.3 1.5 2 0 0 2 2 1 1 Domain of unknown function (DUF4381) CE2_N PF17996.1 gi|282164199|ref|YP_003356584.1| - 0.0053 16.7 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Carbohydrate esterase 2 N-terminal DUF2207 PF09972.9 gi|282164199|ref|YP_003356584.1| - 0.0057 15.5 0.3 0.0057 15.5 0.3 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2207) RXT2_N PF08595.11 gi|282164199|ref|YP_003356584.1| - 0.012 15.6 0.6 0.022 14.8 0.6 1.3 1 0 0 1 1 1 0 RXT2-like, N-terminal TMEM154 PF15102.6 gi|282164199|ref|YP_003356584.1| - 0.028 14.3 0.0 0.028 14.3 0.0 1.6 2 0 0 2 2 1 0 TMEM154 protein family ABC2_membrane_3 PF12698.7 gi|282164199|ref|YP_003356584.1| - 0.046 12.8 0.0 1.1 8.2 0.0 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein RAMP PF04901.13 gi|282164199|ref|YP_003356584.1| - 0.083 12.9 0.1 0.16 12.0 0.1 1.4 1 0 0 1 1 1 0 Receptor activity modifying family Spore_YpjB PF09577.10 gi|282164199|ref|YP_003356584.1| - 0.097 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Sporulation protein YpjB (SpoYpjB) Phage_holin_3_6 PF07332.11 gi|282164199|ref|YP_003356584.1| - 0.13 12.3 0.2 1.9 8.6 0.0 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III NusG_II PF07009.11 gi|282164199|ref|YP_003356584.1| - 0.13 12.5 0.0 1.6 9.0 0.0 2.3 2 0 0 2 2 2 0 NusG domain II SIT PF15330.6 gi|282164199|ref|YP_003356584.1| - 0.15 12.5 0.2 0.15 12.5 0.2 2.0 2 0 0 2 2 1 0 SHP2-interacting transmembrane adaptor protein, SIT Epimerase PF01370.21 gi|282164200|ref|YP_003356585.1| - 2.9e-47 161.1 0.0 3.9e-47 160.8 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|282164200|ref|YP_003356585.1| - 3.5e-43 148.3 0.0 1.5e-42 146.2 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|282164200|ref|YP_003356585.1| - 5.1e-17 61.8 0.0 6.7e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|282164200|ref|YP_003356585.1| - 7.5e-15 54.8 0.0 8.4e-14 51.4 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|282164200|ref|YP_003356585.1| - 2.5e-10 40.0 0.0 3.2e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|282164200|ref|YP_003356585.1| - 2.7e-08 33.3 0.8 0.0006 19.1 0.0 2.6 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|282164200|ref|YP_003356585.1| - 2.6e-07 30.7 0.0 7.9e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 NAD(P)H-binding adh_short PF00106.25 gi|282164200|ref|YP_003356585.1| - 0.0067 15.9 0.1 0.077 12.4 0.0 2.3 3 0 0 3 3 3 1 short chain dehydrogenase Pyr_redox PF00070.27 gi|282164200|ref|YP_003356585.1| - 0.017 15.6 2.1 0.18 12.4 0.2 2.6 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|282164200|ref|YP_003356585.1| - 0.068 13.4 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain RIO1 PF01163.22 gi|282164201|ref|YP_003356586.1| - 1.4e-66 223.7 0.1 1.9e-66 223.3 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase_fungal PF17667.1 gi|282164201|ref|YP_003356586.1| - 0.00011 21.2 0.1 0.00032 19.6 0.0 1.7 1 1 1 2 2 2 1 Fungal protein kinase APH PF01636.23 gi|282164201|ref|YP_003356586.1| - 0.00099 19.1 0.0 0.007 16.3 0.0 2.2 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|282164201|ref|YP_003356586.1| - 0.006 16.0 0.1 0.019 14.3 0.1 1.8 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|282164201|ref|YP_003356586.1| - 0.088 12.1 0.0 0.15 11.3 0.0 1.4 1 1 0 1 1 1 0 Protein tyrosine kinase ColG_sub PF18496.1 gi|282164201|ref|YP_003356586.1| - 0.13 12.4 0.1 0.29 11.3 0.1 1.6 1 0 0 1 1 1 0 Collagenase G catalytic helper subdomain GFO_IDH_MocA PF01408.22 gi|282164201|ref|YP_003356586.1| - 0.16 12.8 0.0 0.41 11.5 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold KH_1 PF00013.29 gi|282164202|ref|YP_003356587.1| - 4.2e-16 58.5 7.4 1.9e-08 34.0 1.9 2.3 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|282164202|ref|YP_003356587.1| - 0.0018 18.3 0.0 0.003 17.6 0.0 1.3 1 0 0 1 1 1 1 Krr1 KH1 domain Cu_amine_oxidN1 PF07833.11 gi|282164202|ref|YP_003356587.1| - 0.097 13.2 0.3 0.26 11.8 0.1 1.7 2 0 0 2 2 2 0 Copper amine oxidase N-terminal domain KH_5 PF13184.6 gi|282164202|ref|YP_003356587.1| - 0.19 11.8 6.4 2.8 8.1 1.9 2.5 2 1 0 2 2 2 0 NusA-like KH domain KH_4 PF13083.6 gi|282164202|ref|YP_003356587.1| - 1.2 9.1 8.5 2.4 8.1 0.6 3.3 2 1 1 3 3 3 0 KH domain KH_2 PF07650.17 gi|282164202|ref|YP_003356587.1| - 1.9 8.3 12.1 0.61 10.0 2.0 2.8 2 1 0 2 2 2 0 KH domain PAC2 PF09754.9 gi|282164203|ref|YP_003356588.1| - 3.4e-46 158.0 0.0 3.9e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.12 gi|282164204|ref|YP_003356589.1| - 1.9e-22 79.1 3.4 2e-22 79.0 3.4 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-tcix PF14952.6 gi|282164204|ref|YP_003356589.1| - 0.00054 19.5 5.9 0.029 14.0 0.5 2.2 2 0 0 2 2 2 2 Putative treble-clef, zinc-finger, Zn-binding RecR PF02132.15 gi|282164204|ref|YP_003356589.1| - 0.00075 19.0 0.5 0.00099 18.6 0.5 1.3 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|282164204|ref|YP_003356589.1| - 0.00096 17.1 0.5 0.00096 17.1 0.5 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 DUF1272 PF06906.11 gi|282164204|ref|YP_003356589.1| - 0.0032 17.5 1.7 0.0036 17.4 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zf-NADH-PPase PF09297.11 gi|282164204|ref|YP_003356589.1| - 0.0063 16.1 3.9 0.57 9.9 0.5 2.2 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|282164204|ref|YP_003356589.1| - 0.0093 16.1 1.8 0.013 15.6 1.8 1.4 1 1 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like DUF35_N PF12172.8 gi|282164204|ref|YP_003356589.1| - 0.013 15.3 3.9 0.024 14.5 3.9 1.4 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-IS66 PF13005.7 gi|282164204|ref|YP_003356589.1| - 0.027 14.8 1.3 0.72 10.3 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 HypA PF01155.19 gi|282164204|ref|YP_003356589.1| - 0.04 13.9 0.8 0.046 13.7 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RRN7 PF11781.8 gi|282164204|ref|YP_003356589.1| - 0.042 13.5 3.3 0.4 10.4 0.1 2.2 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-FPG_IleRS PF06827.14 gi|282164204|ref|YP_003356589.1| - 0.065 13.1 1.8 2.3 8.1 0.2 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS NRDD PF13597.6 gi|282164204|ref|YP_003356589.1| - 0.1 11.4 1.3 0.099 11.4 1.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-ribbon_3 PF13248.6 gi|282164204|ref|YP_003356589.1| - 0.12 11.8 7.9 2.5 7.6 7.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|282164204|ref|YP_003356589.1| - 0.12 12.1 5.3 2.4 8.0 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|282164204|ref|YP_003356589.1| - 0.49 9.9 4.0 3.4 7.2 0.3 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com Zn-ribbon_8 PF09723.10 gi|282164204|ref|YP_003356589.1| - 0.96 9.6 6.4 12 6.1 6.4 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-ACC PF17848.1 gi|282164204|ref|YP_003356589.1| - 1.3 9.1 6.7 42 4.3 1.2 2.2 1 1 1 2 2 2 0 Acetyl-coA carboxylase zinc finger domain YhfH PF14149.6 gi|282164204|ref|YP_003356589.1| - 5.6 7.0 12.4 0.52 10.3 1.7 2.5 2 1 1 3 3 3 0 YhfH-like protein EIF_2_alpha PF07541.12 gi|282164205|ref|YP_003356590.1| - 3e-22 78.9 0.0 5.3e-22 78.1 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|282164205|ref|YP_003356590.1| - 7.9e-12 45.3 0.4 7.9e-12 45.3 0.4 2.1 2 0 0 2 2 2 1 S1 RNA binding domain CelTOS PF18659.1 gi|282164205|ref|YP_003356590.1| - 0.11 13.0 0.1 0.24 11.8 0.1 1.7 1 0 0 1 1 1 0 Cell-traversal protein for ookinetes and sporozoites Ribosomal_S27e PF01667.17 gi|282164206|ref|YP_003356591.1| - 2.3e-23 81.7 1.7 2.5e-23 81.5 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn_Tnp_IS91 PF14319.6 gi|282164206|ref|YP_003356591.1| - 0.005 16.9 0.2 0.0051 16.8 0.2 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain HypA PF01155.19 gi|282164206|ref|YP_003356591.1| - 0.014 15.4 0.6 0.016 15.2 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_6 PF14599.6 gi|282164206|ref|YP_003356591.1| - 0.063 13.3 3.2 0.18 11.9 3.3 1.7 1 1 0 1 1 1 0 Zinc-ribbon zf-C2H2_3 PF13878.6 gi|282164206|ref|YP_003356591.1| - 0.092 12.6 1.1 4.3 7.3 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_4 PF13717.6 gi|282164206|ref|YP_003356591.1| - 0.94 9.5 5.9 3.5 7.6 0.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_L44 PF00935.19 gi|282164207|ref|YP_003356592.1| - 5.8e-25 87.6 6.8 8.1e-25 87.1 6.8 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zf-FPG_IleRS PF06827.14 gi|282164207|ref|YP_003356592.1| - 0.022 14.6 2.9 0.22 11.4 0.2 2.6 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zinc_ribbon_15 PF17032.5 gi|282164207|ref|YP_003356592.1| - 0.022 15.5 1.1 0.034 14.9 1.1 1.4 1 1 0 1 1 1 0 zinc-ribbon family Cys_rich_KTR PF14205.6 gi|282164207|ref|YP_003356592.1| - 0.025 14.4 2.4 0.36 10.7 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich KTR Nudix_N_2 PF14803.6 gi|282164207|ref|YP_003356592.1| - 0.1 12.5 3.5 1.7 8.7 0.2 2.5 2 1 0 2 2 2 0 Nudix N-terminal zf-LITAF-like PF10601.9 gi|282164207|ref|YP_003356592.1| - 0.19 12.0 3.2 0.29 11.4 0.4 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Ribosomal_L33 PF00471.20 gi|282164207|ref|YP_003356592.1| - 0.31 11.5 12.2 0.51 10.8 4.0 2.6 3 0 0 3 3 3 0 Ribosomal protein L33 Sld5 PF05916.11 gi|282164208|ref|YP_003356593.1| - 0.035 14.6 0.4 0.058 13.9 0.4 1.3 1 0 0 1 1 1 0 GINS complex protein DNA_primase_S PF01896.19 gi|282164209|ref|YP_003356594.1| - 2.5e-30 105.8 0.0 8e-30 104.2 0.0 1.8 1 1 0 1 1 1 1 DNA primase small subunit PorA PF11271.8 gi|282164210|ref|YP_003356595.1| - 0.059 12.7 0.2 0.059 12.7 0.2 1.7 2 0 0 2 2 2 0 Porin PorA Gram_pos_anchor PF00746.21 gi|282164210|ref|YP_003356595.1| - 3.4 7.7 5.2 1.1 9.3 0.8 2.2 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DUF5518 PF17647.1 gi|282164211|ref|YP_003356596.1| - 9.5e-05 22.5 21.1 9.5e-05 22.5 21.1 2.2 2 0 0 2 2 2 1 Family of unknown function (DUF5518) Chordopox_A13L PF05961.11 gi|282164211|ref|YP_003356596.1| - 0.042 14.1 0.6 0.042 14.1 0.6 1.9 2 0 0 2 2 2 0 Chordopoxvirus A13L protein DUF4271 PF14093.6 gi|282164211|ref|YP_003356596.1| - 2.8 7.8 13.8 4 7.3 13.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) Tim17 PF02466.19 gi|282164211|ref|YP_003356596.1| - 6 7.3 16.2 1.5 9.2 1.8 3.5 2 1 0 3 3 3 0 Tim17/Tim22/Tim23/Pmp24 family tRNA-synt_1 PF00133.22 gi|282164212|ref|YP_003356597.1| - 8.4e-111 371.1 0.0 2.1e-109 366.5 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|282164212|ref|YP_003356597.1| - 3e-35 121.4 0.3 5.4e-35 120.6 0.3 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|282164212|ref|YP_003356597.1| - 3.2e-17 62.4 0.0 9.7e-10 37.7 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|282164212|ref|YP_003356597.1| - 0.00015 21.3 0.0 0.00031 20.3 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|282164212|ref|YP_003356597.1| - 0.0029 17.0 0.0 0.23 10.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain PAS_3 PF08447.12 gi|282164213|ref|YP_003356598.1| - 1.6e-45 153.3 0.1 4.7e-22 78.1 0.2 3.4 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|282164213|ref|YP_003356598.1| - 6e-27 93.9 0.0 2.1e-11 43.8 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|282164213|ref|YP_003356598.1| - 8.6e-23 80.7 1.3 1.3e-08 35.0 0.0 4.0 3 2 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|282164213|ref|YP_003356598.1| - 3.4e-19 69.4 0.0 1.1e-18 67.7 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|282164213|ref|YP_003356598.1| - 7.6e-19 67.9 0.0 1.1e-09 38.5 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_11 PF14598.6 gi|282164213|ref|YP_003356598.1| - 4.2e-07 30.1 0.0 1e-06 28.8 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|282164213|ref|YP_003356598.1| - 9.5e-07 28.7 0.0 0.00041 20.3 0.0 3.0 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.7 gi|282164213|ref|YP_003356598.1| - 0.00033 20.8 0.3 1.2 9.4 0.0 3.5 4 0 0 4 4 4 2 PAS fold HATPase_c_2 PF13581.6 gi|282164213|ref|YP_003356598.1| - 0.0024 17.8 0.0 0.0075 16.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|282164214|ref|YP_003356599.1| - 8e-37 125.7 0.3 4.9e-13 49.2 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|282164214|ref|YP_003356599.1| - 3.2e-29 101.2 0.0 2.3e-10 40.4 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|282164214|ref|YP_003356599.1| - 1e-19 70.8 0.0 3.9e-06 27.1 0.0 3.8 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|282164214|ref|YP_003356599.1| - 1.7e-18 66.2 0.0 1.8e-08 34.2 0.0 3.6 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|282164214|ref|YP_003356599.1| - 8.5e-18 64.9 0.3 2.6e-17 63.3 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|282164214|ref|YP_003356599.1| - 2.8e-17 62.8 0.0 1e-05 25.7 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_6 PF08348.11 gi|282164214|ref|YP_003356599.1| - 0.019 14.8 0.1 0.051 13.4 0.1 1.7 1 0 0 1 1 1 0 YheO-like PAS domain PAS_12 PF18095.1 gi|282164214|ref|YP_003356599.1| - 0.026 14.2 0.0 0.94 9.1 0.0 3.1 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain HATPase_c_3 PF13589.6 gi|282164214|ref|YP_003356599.1| - 0.045 13.6 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PulG PF11773.8 gi|282164214|ref|YP_003356599.1| - 0.054 13.3 0.3 0.26 11.1 0.3 2.2 1 1 0 1 1 1 0 Type II secretory pathway pseudopilin Response_reg PF00072.24 gi|282164215|ref|YP_003356600.1| - 7.2e-19 68.0 0.1 8e-19 67.9 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain UPF0160 PF03690.13 gi|282164215|ref|YP_003356600.1| - 0.089 12.4 0.0 0.089 12.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0160) Sld7_C PF18596.1 gi|282164215|ref|YP_003356600.1| - 0.1 12.8 0.0 2.9 8.1 0.0 2.1 2 0 0 2 2 2 0 Sld7 C-terminal domain PAS_3 PF08447.12 gi|282164216|ref|YP_003356601.1| - 6.2e-39 132.2 5.5 1.4e-21 76.6 0.2 2.9 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|282164216|ref|YP_003356601.1| - 1.7e-19 70.3 0.1 4.3e-19 69.1 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|282164216|ref|YP_003356601.1| - 3.3e-19 69.6 0.0 1.5e-18 67.4 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.10 gi|282164216|ref|YP_003356601.1| - 8.1e-19 67.9 0.4 3.3e-11 43.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|282164216|ref|YP_003356601.1| - 4.7e-17 62.1 0.0 2.1e-08 34.4 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|282164216|ref|YP_003356601.1| - 2.7e-15 56.3 0.1 5.7e-06 26.3 0.0 3.3 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|282164216|ref|YP_003356601.1| - 6.4e-08 32.4 0.1 0.0014 18.6 0.0 3.1 3 0 0 3 3 2 2 PAS domain HATPase_c_2 PF13581.6 gi|282164216|ref|YP_003356601.1| - 2.2e-05 24.4 0.0 0.00031 20.7 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain GAF PF01590.26 gi|282164216|ref|YP_003356601.1| - 7.1e-05 23.4 0.0 0.00018 22.1 0.0 1.7 2 0 0 2 2 1 1 GAF domain GAF_3 PF13492.6 gi|282164216|ref|YP_003356601.1| - 0.00013 22.4 0.0 0.00061 20.1 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_11 PF14598.6 gi|282164216|ref|YP_003356601.1| - 0.0052 16.9 0.0 0.033 14.3 0.0 2.1 2 0 0 2 2 2 1 PAS domain HIP1_clath_bdg PF16515.5 gi|282164216|ref|YP_003356601.1| - 0.0096 16.5 1.4 0.0096 16.5 1.4 3.3 3 1 0 3 3 3 1 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF2205 PF10224.9 gi|282164216|ref|YP_003356601.1| - 0.016 15.2 2.2 7.8 6.6 1.2 3.1 2 0 0 2 2 2 0 Short coiled-coil protein MnmE_helical PF12631.7 gi|282164216|ref|YP_003356601.1| - 0.061 13.5 0.8 0.86 9.7 0.8 2.5 1 1 0 1 1 1 0 MnmE helical domain PUMA PF15826.5 gi|282164216|ref|YP_003356601.1| - 0.096 12.9 1.2 0.2 11.8 1.2 1.4 1 0 0 1 1 1 0 Bcl-2-binding component 3, p53 upregulated modulator of apoptosis Seryl_tRNA_N PF02403.22 gi|282164216|ref|YP_003356601.1| - 0.26 11.6 8.5 0.69 10.2 0.1 3.1 3 0 0 3 3 2 0 Seryl-tRNA synthetase N-terminal domain GAS PF13851.6 gi|282164216|ref|YP_003356601.1| - 0.5 9.7 7.2 0.064 12.6 1.6 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding OmpH PF03938.14 gi|282164216|ref|YP_003356601.1| - 2.3 8.6 14.7 0.22 11.8 2.6 3.2 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) DUF4061 PF13270.6 gi|282164216|ref|YP_003356601.1| - 8.1 6.8 6.9 5.9 7.3 1.3 3.0 3 0 0 3 3 2 0 Domain of unknown function (DUF4061) PAS_9 PF13426.7 gi|282164217|ref|YP_003356602.1| - 3.5e-41 139.7 0.9 7.9e-17 61.4 0.1 3.9 4 0 0 4 4 4 3 PAS domain PAS PF00989.25 gi|282164217|ref|YP_003356602.1| - 1.2e-35 121.9 0.0 1e-13 51.3 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|282164217|ref|YP_003356602.1| - 5.9e-35 119.8 0.0 6.3e-11 42.5 0.0 3.9 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|282164217|ref|YP_003356602.1| - 3.4e-23 81.2 0.0 2.4e-10 40.2 0.0 3.8 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|282164217|ref|YP_003356602.1| - 4e-21 75.6 0.0 9.7e-21 74.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|282164217|ref|YP_003356602.1| - 5.8e-16 58.6 0.5 1.8e-08 34.6 0.0 3.3 3 0 0 3 3 2 2 PAS fold PAS_7 PF12860.7 gi|282164217|ref|YP_003356602.1| - 1.2e-10 41.6 0.9 4.1e-06 26.9 0.2 3.9 3 1 0 3 3 3 2 PAS fold PAS_10 PF13596.6 gi|282164217|ref|YP_003356602.1| - 1.8e-08 34.9 2.1 3.3e-05 24.4 0.1 4.1 3 1 0 3 3 3 1 PAS domain HATPase_c_5 PF14501.6 gi|282164217|ref|YP_003356602.1| - 0.0009 19.1 0.0 0.0021 17.9 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|282164217|ref|YP_003356602.1| - 0.0016 18.4 0.0 0.0039 17.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SIMPL PF04402.14 gi|282164217|ref|YP_003356602.1| - 0.059 13.8 0.6 11 6.4 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF541) HATPase_c_3 PF13589.6 gi|282164217|ref|YP_003356602.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TPR_11 PF13414.6 gi|282164220|ref|YP_003356605.1| - 9.8e-245 790.1 77.4 2.2e-11 43.3 0.3 27.2 7 6 20 27 27 27 27 TPR repeat TPR_1 PF00515.28 gi|282164220|ref|YP_003356605.1| - 1.1e-152 490.4 85.5 6.3e-09 35.3 0.8 28.0 28 0 0 28 28 28 27 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282164220|ref|YP_003356605.1| - 2.9e-139 442.3 91.3 2.8e-08 33.2 1.0 27.9 28 0 0 28 28 28 26 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282164220|ref|YP_003356605.1| - 6.4e-127 405.2 58.2 4.8e-05 23.5 0.1 27.5 28 0 0 28 28 27 26 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164220|ref|YP_003356605.1| - 2.8e-119 379.6 52.3 4e-07 29.7 0.4 27.7 28 0 0 28 28 28 26 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164220|ref|YP_003356605.1| - 2.5e-112 367.3 83.2 9.5e-11 42.2 2.1 20.9 2 2 20 24 24 24 23 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282164220|ref|YP_003356605.1| - 5.3e-85 272.8 85.4 0.00023 21.7 0.0 25.8 5 5 21 26 26 26 22 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282164220|ref|YP_003356605.1| - 3.9e-63 209.9 72.0 8.1e-07 29.5 0.1 17.1 7 4 5 17 17 17 14 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282164220|ref|YP_003356605.1| - 4.1e-60 200.0 72.6 2.8e-06 27.5 0.6 17.4 2 2 17 19 19 19 17 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282164220|ref|YP_003356605.1| - 2.4e-46 153.4 40.2 0.016 15.8 0.2 24.9 25 0 0 25 25 25 8 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282164220|ref|YP_003356605.1| - 6e-40 132.4 47.2 0.0085 16.1 0.1 24.8 26 0 0 26 26 25 6 Tetratricopeptide repeat TPR_20 PF14561.6 gi|282164220|ref|YP_003356605.1| - 2e-33 114.6 42.7 0.0013 19.0 0.2 16.8 1 1 15 18 18 18 8 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282164220|ref|YP_003356605.1| - 1.2e-21 75.8 88.0 0.023 14.6 0.3 21.8 25 0 0 25 25 22 7 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282164220|ref|YP_003356605.1| - 5e-20 71.4 61.8 0.002 18.2 0.4 13.5 8 4 3 15 15 15 7 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|282164220|ref|YP_003356605.1| - 9.6e-19 67.9 5.0 9.4 5.9 0.0 16.4 3 3 15 20 20 20 0 Plant specific mitochondrial import receptor subunit TOM20 ANAPC3 PF12895.7 gi|282164220|ref|YP_003356605.1| - 8.4e-18 64.4 20.3 0.041 14.1 0.2 9.9 5 2 6 11 11 11 7 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.6 gi|282164220|ref|YP_003356605.1| - 1.6e-16 60.3 24.1 0.0017 17.6 0.2 12.0 1 1 7 13 13 13 4 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|282164220|ref|YP_003356605.1| - 2.4e-14 53.5 0.1 0.031 13.7 0.1 8.3 4 3 5 9 9 9 3 MalT-like TPR region TPR_4 PF07721.14 gi|282164220|ref|YP_003356605.1| - 4.7e-13 48.4 25.7 5.5 7.9 0.0 16.2 21 0 0 21 21 13 0 Tetratricopeptide repeat BTAD PF03704.17 gi|282164220|ref|YP_003356605.1| - 8.6e-13 49.0 40.9 0.019 15.4 0.4 11.5 2 2 10 13 13 13 5 Bacterial transcriptional activator domain SHNi-TPR PF10516.9 gi|282164220|ref|YP_003356605.1| - 2e-08 33.5 28.4 0.53 9.8 0.0 15.2 18 1 1 19 19 18 1 SHNi-TPR HrpB1_HrpK PF09613.10 gi|282164220|ref|YP_003356605.1| - 2e-07 30.7 6.9 4.4 7.0 0.0 8.1 4 4 5 9 9 9 1 Bacterial type III secretion protein (HrpB1_HrpK) EST1_DNA_bind PF10373.9 gi|282164220|ref|YP_003356605.1| - 5.4e-06 26.1 4.6 0.18 11.2 0.1 4.1 3 0 0 3 3 3 2 Est1 DNA/RNA binding domain DUF4810 PF16068.5 gi|282164220|ref|YP_003356605.1| - 8.1e-06 26.3 3.5 4.6 7.9 0.0 8.5 7 1 3 10 10 9 1 Domain of unknown function (DUF4810) DUF627 PF04781.12 gi|282164220|ref|YP_003356605.1| - 0.00022 21.2 1.4 81 3.3 0.0 7.4 6 3 4 10 10 10 0 Protein of unknown function (DUF627) PPR PF01535.20 gi|282164220|ref|YP_003356605.1| - 0.0019 18.4 9.0 35 4.9 0.0 9.3 11 0 0 11 11 9 0 PPR repeat ANAPC5 PF12862.7 gi|282164220|ref|YP_003356605.1| - 0.0034 17.4 16.1 7.9 6.6 0.1 9.4 5 1 3 9 9 8 0 Anaphase-promoting complex subunit 5 LysR_substrate PF03466.20 gi|282164220|ref|YP_003356605.1| - 0.0049 16.3 0.1 6.6 6.0 0.0 5.0 5 0 0 5 5 5 0 LysR substrate binding domain DUF5475 PF17569.2 gi|282164220|ref|YP_003356605.1| - 0.0059 16.9 0.8 17 5.8 0.0 5.6 6 0 0 6 6 3 0 Family of unknown function (DUF5475) Coatomer_E PF04733.14 gi|282164220|ref|YP_003356605.1| - 0.014 14.8 0.1 11 5.3 0.0 4.7 5 1 0 5 5 5 0 Coatomer epsilon subunit MIT PF04212.18 gi|282164220|ref|YP_003356605.1| - 0.061 13.4 39.4 20 5.3 0.3 13.4 14 1 1 15 15 14 0 MIT (microtubule interacting and transport) domain Rac1 PF09632.10 gi|282164220|ref|YP_003356605.1| - 0.43 9.7 1.6 87 2.1 0.0 4.8 4 2 3 7 7 6 0 Rac1-binding domain Fis1_TPR_C PF14853.6 gi|282164220|ref|YP_003356605.1| - 0.6 10.2 24.0 1.8 8.7 0.7 8.6 8 1 1 9 9 6 0 Fis1 C-terminal tetratricopeptide repeat TPR_5 PF12688.7 gi|282164220|ref|YP_003356605.1| - 0.91 9.8 18.2 49 4.2 0.0 8.2 8 2 2 10 10 9 0 Tetratrico peptide repeat FAA_hydrolase PF01557.18 gi|282164221|ref|YP_003356606.1| - 4.3e-69 232.5 0.0 5e-69 232.3 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF3421 PF11901.8 gi|282164221|ref|YP_003356606.1| - 0.043 13.8 0.0 0.073 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3421) DHODB_Fe-S_bind PF10418.9 gi|282164222|ref|YP_003356607.1| - 5.5e-11 42.1 4.6 9.8e-11 41.3 4.6 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|282164222|ref|YP_003356607.1| - 2.4e-05 24.9 0.2 8.3e-05 23.2 0.2 1.9 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|282164222|ref|YP_003356607.1| - 0.0011 19.3 0.0 0.05 14.0 0.0 2.6 2 1 0 2 2 2 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|282164222|ref|YP_003356607.1| - 0.11 12.6 0.1 7.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Ferric reductase NAD binding domain DHO_dh PF01180.21 gi|282164223|ref|YP_003356608.1| - 3.2e-62 210.4 0.6 3.7e-62 210.2 0.6 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|282164223|ref|YP_003356608.1| - 1.9e-08 33.8 0.1 0.0014 17.7 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|282164223|ref|YP_003356608.1| - 0.00026 20.5 3.6 0.00078 18.9 3.3 1.8 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|282164223|ref|YP_003356608.1| - 0.00064 19.3 1.2 0.0021 17.6 0.1 2.2 3 1 0 3 3 3 1 Histidine biosynthesis protein DUF561 PF04481.12 gi|282164223|ref|YP_003356608.1| - 0.0032 16.7 0.4 0.0081 15.4 0.2 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF561) IMPDH PF00478.25 gi|282164223|ref|YP_003356608.1| - 0.0058 15.7 3.7 0.0097 14.9 3.7 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain N6_Mtase PF02384.16 gi|282164224|ref|YP_003356609.1| - 8.2e-20 71.3 0.0 1.2e-19 70.7 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase Eco57I PF07669.11 gi|282164224|ref|YP_003356609.1| - 3.2e-14 53.3 0.0 8.4e-14 52.0 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase TaqI_C PF12950.7 gi|282164224|ref|YP_003356609.1| - 1.2e-06 28.6 0.0 3e-06 27.3 0.0 1.7 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain UPF0020 PF01170.18 gi|282164224|ref|YP_003356609.1| - 0.0059 16.3 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|282164224|ref|YP_003356609.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GHMP_kinases_C PF08544.13 gi|282164225|ref|YP_003356610.1| - 0.00015 22.1 0.7 0.00024 21.4 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|282164225|ref|YP_003356610.1| - 0.0019 18.4 1.3 0.0019 18.4 1.3 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain YjbR PF04237.13 gi|282164225|ref|YP_003356610.1| - 0.015 15.8 0.0 0.03 14.9 0.0 1.4 1 0 0 1 1 1 0 YjbR MmgE_PrpD PF03972.14 gi|282164225|ref|YP_003356610.1| - 0.19 10.3 0.0 0.26 9.8 0.0 1.1 1 0 0 1 1 1 0 MmgE/PrpD family Nop PF01798.18 gi|282164226|ref|YP_003356611.1| - 1e-47 162.6 0.3 4.7e-45 153.8 0.1 2.1 1 1 1 2 2 2 2 snoRNA binding domain, fibrillarin Fibrillarin PF01269.17 gi|282164227|ref|YP_003356612.1| - 2.7e-65 219.7 0.0 3.1e-65 219.4 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Amdase PF17645.1 gi|282164227|ref|YP_003356612.1| - 0.02 14.5 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Arylmalonate decarboxylase PqqD PF05402.12 gi|282164228|ref|YP_003356613.1| - 3e-10 40.3 0.0 4.1e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DdrB PF12747.7 gi|282164228|ref|YP_003356613.1| - 0.055 13.3 0.0 0.058 13.2 0.0 1.2 1 0 0 1 1 1 0 DdrB-like protein MttA_Hcf106 PF02416.16 gi|282164229|ref|YP_003356614.1| - 6.3e-13 47.8 0.1 7e-13 47.7 0.1 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family ABC_tran PF00005.27 gi|282164230|ref|YP_003356615.1| - 2.7e-33 115.4 0.0 3.6e-33 115.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|282164230|ref|YP_003356615.1| - 2.7e-17 63.0 0.1 4.3e-17 62.4 0.1 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|282164230|ref|YP_003356615.1| - 1.2e-07 31.8 0.1 8.4e-05 22.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282164230|ref|YP_003356615.1| - 5.9e-06 25.9 0.0 1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|282164230|ref|YP_003356615.1| - 0.0014 18.9 0.1 0.0092 16.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|282164230|ref|YP_003356615.1| - 0.0021 18.5 0.1 0.016 15.7 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|282164230|ref|YP_003356615.1| - 0.0036 17.7 0.0 0.0067 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|282164230|ref|YP_003356615.1| - 0.0075 15.9 0.1 2.9 7.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|282164230|ref|YP_003356615.1| - 0.01 15.8 0.0 0.081 12.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|282164230|ref|YP_003356615.1| - 0.015 14.9 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 gi|282164230|ref|YP_003356615.1| - 0.02 14.4 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region TniB PF05621.11 gi|282164230|ref|YP_003356615.1| - 0.058 12.8 0.1 4 6.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein PRK PF00485.18 gi|282164230|ref|YP_003356615.1| - 0.082 12.6 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Sigma54_activat PF00158.26 gi|282164230|ref|YP_003356615.1| - 0.19 11.4 0.1 2.2 8.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|282164231|ref|YP_003356616.1| - 2.2e-28 99.5 0.0 3e-28 99.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|282164231|ref|YP_003356616.1| - 1e-19 70.8 0.4 1.9e-19 70.0 0.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|282164231|ref|YP_003356616.1| - 3.6e-05 23.7 0.4 0.0015 18.4 0.1 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282164231|ref|YP_003356616.1| - 0.00048 19.6 0.0 0.00092 18.7 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.25 gi|282164231|ref|YP_003356616.1| - 0.047 13.3 0.1 0.089 12.4 0.1 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.29 gi|282164231|ref|YP_003356616.1| - 0.08 13.4 0.1 0.61 10.5 0.0 2.1 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AIG1 PF04548.16 gi|282164231|ref|YP_003356616.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 AIG1 family AAA_22 PF13401.6 gi|282164231|ref|YP_003356616.1| - 0.15 12.3 0.8 1.3 9.3 0.8 2.1 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|282164232|ref|YP_003356617.1| - 2.5e-37 128.4 7.5 2.5e-37 128.4 7.5 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|282164232|ref|YP_003356617.1| - 1.5e-11 44.0 1.6 1.5e-11 44.0 1.6 3.5 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF3169 PF11368.8 gi|282164232|ref|YP_003356617.1| - 2.2 7.7 13.2 5.9 6.3 7.6 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3169) BPD_transp_1 PF00528.22 gi|282164233|ref|YP_003356618.1| - 9.1e-43 146.1 13.8 9.1e-43 146.1 13.8 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF21 PF01595.20 gi|282164233|ref|YP_003356618.1| - 0.72 9.5 7.3 1.9 8.2 2.7 2.4 2 1 0 2 2 2 0 Cyclin M transmembrane N-terminal domain SBP_bac_5 PF00496.22 gi|282164234|ref|YP_003356619.1| - 1.1e-80 271.5 7.4 1.5e-80 271.0 7.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Phage_TAC_13 PF16459.5 gi|282164234|ref|YP_003356619.1| - 0.068 13.6 0.0 6.4 7.3 0.0 2.9 2 0 0 2 2 2 0 Phage tail assembly chaperone, TAC DUF3558 PF12079.8 gi|282164234|ref|YP_003356619.1| - 0.11 12.5 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) PALP PF00291.25 gi|282164235|ref|YP_003356620.1| - 4.9e-76 256.0 3.3 5.6e-76 255.8 3.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Prok-E2_C PF14459.6 gi|282164235|ref|YP_003356620.1| - 0.0097 16.1 0.1 0.041 14.1 0.1 1.9 2 0 0 2 2 2 1 Prokaryotic E2 family C PK_C PF02887.16 gi|282164235|ref|YP_003356620.1| - 0.012 15.8 0.8 0.037 14.3 0.0 2.0 2 1 0 2 2 2 0 Pyruvate kinase, alpha/beta domain C1_2 PF03107.16 gi|282164235|ref|YP_003356620.1| - 0.27 11.6 1.2 0.48 10.8 1.2 1.4 1 0 0 1 1 1 0 C1 domain RNA_POL_M_15KD PF02150.16 gi|282164235|ref|YP_003356620.1| - 1.7 8.6 3.5 0.97 9.4 0.3 2.2 1 1 2 3 3 3 0 RNA polymerases M/15 Kd subunit DUF4149 PF13664.6 gi|282164236|ref|YP_003356621.1| - 0.05 13.9 1.6 0.082 13.2 1.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) Cation_ATPase_C PF00689.21 gi|282164236|ref|YP_003356621.1| - 0.079 12.7 2.2 0.12 12.1 2.2 1.3 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus NHL PF01436.21 gi|282164238|ref|YP_003356623.1| - 0.2 11.8 6.6 2.6 8.3 0.0 4.6 5 0 0 5 5 5 0 NHL repeat FrhB_FdhB_C PF04432.13 gi|282164239|ref|YP_003356624.1| - 4.5e-36 124.0 0.8 4.5e-36 124.0 0.8 2.0 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|282164239|ref|YP_003356624.1| - 8.3e-22 77.1 0.1 1.8e-21 76.0 0.1 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|282164239|ref|YP_003356624.1| - 2.9e-07 30.0 13.6 0.00012 21.7 4.1 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282164239|ref|YP_003356624.1| - 6.5e-07 29.4 17.3 0.00039 20.5 0.2 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282164239|ref|YP_003356624.1| - 2.4e-06 28.0 18.2 3e-06 27.7 15.8 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282164239|ref|YP_003356624.1| - 2.6e-05 24.4 10.5 0.29 11.3 0.5 4.2 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282164239|ref|YP_003356624.1| - 8.2e-05 22.5 12.1 0.00089 19.2 3.0 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282164239|ref|YP_003356624.1| - 0.00017 21.7 16.3 0.00017 21.7 16.3 3.4 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282164239|ref|YP_003356624.1| - 0.00035 21.1 20.6 0.004 17.7 18.7 3.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282164239|ref|YP_003356624.1| - 0.0023 18.4 13.6 0.078 13.5 0.8 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|282164239|ref|YP_003356624.1| - 0.0025 17.8 27.0 0.011 15.7 1.9 3.8 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|282164239|ref|YP_003356624.1| - 0.0056 17.1 2.5 0.0056 17.1 2.5 4.0 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282164239|ref|YP_003356624.1| - 0.013 15.9 22.9 0.046 14.2 20.0 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282164239|ref|YP_003356624.1| - 0.016 16.1 14.1 0.34 11.9 0.6 3.7 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|282164239|ref|YP_003356624.1| - 0.026 15.3 6.6 2 9.2 0.1 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|282164239|ref|YP_003356624.1| - 1.3 9.9 21.1 0.94 10.4 0.5 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282164239|ref|YP_003356624.1| - 9.9 6.4 26.6 20 5.4 20.3 3.3 3 1 1 4 4 4 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|282164240|ref|YP_003356625.1| - 5.9e-91 305.6 0.0 7.2e-91 305.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|282164240|ref|YP_003356625.1| - 3.2e-31 107.6 0.0 6e-31 106.7 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|282164240|ref|YP_003356625.1| - 7.6e-22 77.1 0.8 1.5e-21 76.1 0.8 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain GXGXG PF01493.19 gi|282164241|ref|YP_003356626.1| - 1.1e-06 28.3 23.4 0.00038 20.1 15.0 3.4 1 1 2 3 3 3 3 GXGXG motif Amidohydro_3 PF07969.11 gi|282164242|ref|YP_003356627.1| - 2.6e-84 284.4 0.5 3e-84 284.2 0.5 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|282164242|ref|YP_003356627.1| - 1.3e-09 37.9 0.2 5.6e-06 25.9 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family Phage_RpbA PF10789.9 gi|282164242|ref|YP_003356627.1| - 0.14 12.2 0.0 0.39 10.8 0.0 1.7 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA Molybdopterin PF00384.22 gi|282164243|ref|YP_003356628.1| - 3.1e-10 39.6 0.0 6.9e-07 28.6 0.0 2.7 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|282164244|ref|YP_003356629.1| - 4.2e-14 52.5 0.0 5e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FlpD PF02662.16 gi|282164245|ref|YP_003356630.1| - 7.8e-50 168.0 0.0 9.8e-50 167.7 0.0 1.1 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit VirE1 PF12189.8 gi|282164245|ref|YP_003356630.1| - 0.072 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Single-strand DNA-binding protein Fer4 PF00037.27 gi|282164246|ref|YP_003356631.1| - 1e-14 53.6 41.3 8.4e-06 25.4 3.0 4.7 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282164246|ref|YP_003356631.1| - 6.2e-14 51.9 30.8 8.9e-08 32.2 8.8 4.2 4 0 0 4 4 3 3 4Fe-4S dicluster domain Pyr_redox_2 PF07992.14 gi|282164246|ref|YP_003356631.1| - 9.7e-14 51.3 0.0 2.9e-12 46.5 0.0 2.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|282164246|ref|YP_003356631.1| - 5e-13 49.4 33.7 2.1e-08 34.6 10.9 3.8 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282164246|ref|YP_003356631.1| - 3.8e-10 40.5 22.9 0.016 16.1 0.4 4.9 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|282164246|ref|YP_003356631.1| - 4e-09 36.5 38.5 7.3e-07 29.3 10.1 3.9 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282164246|ref|YP_003356631.1| - 7.2e-09 35.6 32.6 0.00012 22.1 11.4 3.9 4 0 0 4 4 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282164246|ref|YP_003356631.1| - 1.2e-08 34.7 43.0 0.00043 20.2 2.8 5.2 5 0 0 5 5 5 4 4Fe-4S binding domain FAD_oxidored PF12831.7 gi|282164246|ref|YP_003356631.1| - 2e-06 27.4 0.0 2e-06 27.4 0.0 1.9 2 0 0 2 2 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|282164246|ref|YP_003356631.1| - 2.6e-05 23.5 0.1 6.6e-05 22.2 0.2 1.6 2 0 0 2 2 2 1 FAD binding domain Fer4_2 PF12797.7 gi|282164246|ref|YP_003356631.1| - 3.6e-05 23.6 40.8 0.042 14.0 1.9 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain GIDA PF01134.22 gi|282164246|ref|YP_003356631.1| - 5.5e-05 22.4 0.0 0.00012 21.3 0.0 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Fer4_17 PF13534.6 gi|282164246|ref|YP_003356631.1| - 0.0001 22.7 36.0 0.00017 22.0 5.8 4.7 3 2 2 5 5 5 3 4Fe-4S dicluster domain NAD_binding_8 PF13450.6 gi|282164246|ref|YP_003356631.1| - 0.0003 21.0 0.0 0.00075 19.7 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_22 PF17179.4 gi|282164246|ref|YP_003356631.1| - 0.00034 21.4 22.3 0.39 11.6 0.5 4.6 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282164246|ref|YP_003356631.1| - 0.00048 20.5 34.8 0.025 15.0 10.8 4.2 3 2 2 5 5 4 3 4Fe-4S dicluster domain Pyr_redox_3 PF13738.6 gi|282164246|ref|YP_003356631.1| - 0.0016 17.8 0.2 0.015 14.6 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|282164246|ref|YP_003356631.1| - 0.0017 17.7 0.0 0.0038 16.5 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Fer4_4 PF12800.7 gi|282164246|ref|YP_003356631.1| - 0.0024 18.2 37.9 0.11 13.0 1.9 5.2 5 0 0 5 5 4 3 4Fe-4S binding domain Lycopene_cycl PF05834.12 gi|282164246|ref|YP_003356631.1| - 0.0049 16.0 0.0 2.5 7.1 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.14 gi|282164246|ref|YP_003356631.1| - 0.0057 15.4 0.3 0.01 14.6 0.3 1.4 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.24 gi|282164246|ref|YP_003356631.1| - 0.0073 15.9 0.1 0.15 11.6 0.2 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|282164246|ref|YP_003356631.1| - 0.06 12.6 0.2 0.1 11.8 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.21 gi|282164246|ref|YP_003356631.1| - 0.08 12.2 0.6 0.21 10.8 0.0 2.0 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain CCG PF02754.16 gi|282164247|ref|YP_003356632.1| - 5.3e-34 116.3 4.0 1.6e-19 69.8 0.1 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|282164248|ref|YP_003356633.1| - 1.9e-10 41.0 8.2 2.8e-10 40.5 8.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282164248|ref|YP_003356633.1| - 3.2e-10 40.4 8.9 5.3e-10 39.7 8.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282164248|ref|YP_003356633.1| - 9.8e-09 35.2 8.4 1.7e-08 34.5 8.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282164248|ref|YP_003356633.1| - 4.4e-07 29.9 8.1 8.3e-07 29.0 8.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282164248|ref|YP_003356633.1| - 1.3e-05 25.6 8.4 2.5e-05 24.8 8.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282164248|ref|YP_003356633.1| - 0.003 17.9 10.4 0.13 12.8 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282164248|ref|YP_003356633.1| - 0.023 14.8 5.6 0.056 13.6 5.6 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282164248|ref|YP_003356633.1| - 0.16 13.0 13.7 3.3 8.7 14.1 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|282164248|ref|YP_003356633.1| - 0.19 11.9 6.0 4 7.7 0.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282164248|ref|YP_003356633.1| - 0.78 9.7 13.8 3.3 7.7 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282164248|ref|YP_003356633.1| - 2.6 8.3 17.6 0.61 10.3 3.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain RecR PF02132.15 gi|282164248|ref|YP_003356633.1| - 7.9 6.1 9.5 4.5 6.9 1.4 2.4 2 0 0 2 2 2 0 RecR protein Fer4_6 PF12837.7 gi|282164248|ref|YP_003356633.1| - 8.3 6.7 12.4 0.98 9.6 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|282164249|ref|YP_003356634.1| - 2.7e-44 147.2 85.6 5.5e-08 32.3 3.8 8.7 8 1 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282164249|ref|YP_003356634.1| - 4.1e-36 123.3 61.1 4.7e-10 39.9 10.1 5.3 4 1 2 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282164249|ref|YP_003356634.1| - 1.7e-28 98.5 67.4 3.3e-06 27.1 11.3 6.7 2 1 5 7 7 7 7 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282164249|ref|YP_003356634.1| - 1.7e-27 95.3 61.0 4.2e-08 33.2 7.8 5.8 5 1 1 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282164249|ref|YP_003356634.1| - 2.1e-26 90.9 81.4 1.6e-05 24.8 2.8 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282164249|ref|YP_003356634.1| - 2.2e-25 87.1 73.0 3.4e-05 23.7 1.7 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282164249|ref|YP_003356634.1| - 8.7e-24 83.4 65.4 1.4e-05 25.1 8.9 6.3 4 1 2 6 6 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282164249|ref|YP_003356634.1| - 3.3e-21 76.0 68.4 1.1e-05 26.2 9.3 7.1 4 2 4 8 8 8 8 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|282164249|ref|YP_003356634.1| - 4.2e-14 52.7 63.9 0.00017 21.9 8.1 6.3 4 2 3 7 7 7 5 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282164249|ref|YP_003356634.1| - 3.3e-11 43.6 63.7 0.0018 18.8 8.3 6.7 2 2 5 7 7 7 6 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282164249|ref|YP_003356634.1| - 4.4e-10 39.3 74.8 6.8e-05 23.1 1.4 8.3 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_15 PF13459.6 gi|282164249|ref|YP_003356634.1| - 3.5e-09 37.3 58.3 0.0098 16.6 0.5 8.5 8 1 0 8 8 8 6 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|282164249|ref|YP_003356634.1| - 2.8e-06 27.8 77.6 0.11 13.0 3.5 8.2 8 0 0 8 8 8 7 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|282164249|ref|YP_003356634.1| - 3.2e-06 27.7 97.0 0.011 16.7 4.6 8.3 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_22 PF17179.4 gi|282164249|ref|YP_003356634.1| - 0.018 15.9 57.8 0.032 15.1 0.1 8.1 6 2 4 10 10 9 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282164250|ref|YP_003356635.1| - 1e-14 53.7 18.1 1.3e-08 34.2 4.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282164250|ref|YP_003356635.1| - 7e-12 45.8 8.8 1.4e-11 44.7 9.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282164250|ref|YP_003356635.1| - 2.3e-11 43.6 6.4 2e-05 24.6 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282164250|ref|YP_003356635.1| - 3.2e-11 42.6 13.3 2.9e-07 30.2 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|282164250|ref|YP_003356635.1| - 5.5e-11 43.2 7.9 2e-05 25.4 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|282164250|ref|YP_003356635.1| - 6.3e-11 41.9 16.6 8.7e-06 25.6 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282164250|ref|YP_003356635.1| - 5.4e-09 36.1 7.1 9.5e-09 35.3 7.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282164250|ref|YP_003356635.1| - 1.9e-08 34.3 14.4 9.1e-08 32.1 14.4 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282164250|ref|YP_003356635.1| - 9.2e-06 25.8 11.8 0.016 15.7 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|282164250|ref|YP_003356635.1| - 2.3e-05 25.0 9.1 0.0065 17.2 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|282164250|ref|YP_003356635.1| - 4.5e-05 24.1 21.6 0.0028 18.5 8.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|282164250|ref|YP_003356635.1| - 8.9e-05 23.3 7.2 0.027 15.3 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282164250|ref|YP_003356635.1| - 0.00012 22.6 11.4 0.002 18.6 11.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282164250|ref|YP_003356635.1| - 0.0026 18.1 13.8 0.21 12.0 4.5 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282164250|ref|YP_003356635.1| - 0.035 14.6 13.1 0.19 12.3 2.7 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|282164250|ref|YP_003356635.1| - 0.16 11.7 5.6 0.22 11.3 5.6 1.2 1 0 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|282164250|ref|YP_003356635.1| - 2.1 8.6 13.0 4.2 7.6 2.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF1905 PF08922.11 gi|282164251|ref|YP_003356636.1| - 1.4e-14 53.9 0.1 2.3e-14 53.2 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1905) OmdA PF13376.6 gi|282164251|ref|YP_003356636.1| - 1.6e-13 50.5 0.2 3e-13 49.6 0.2 1.4 1 0 0 1 1 1 1 Bacteriocin-protection, YdeI or OmpD-Associated CDC48_N PF02359.18 gi|282164251|ref|YP_003356636.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain TcdB_N PF12918.7 gi|282164251|ref|YP_003356636.1| - 0.22 11.9 1.1 0.35 11.2 1.1 1.2 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain VWA_2 PF13519.6 gi|282164252|ref|YP_003356637.1| - 5.6e-10 39.8 0.0 1.3e-09 38.6 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|282164252|ref|YP_003356637.1| - 1.2e-06 29.0 0.0 2e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|282164252|ref|YP_003356637.1| - 0.016 14.6 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein HD_4 PF13328.6 gi|282164254|ref|YP_003356639.1| - 4.1e-05 23.4 0.1 5.1e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 HD domain RNase_T PF00929.24 gi|282164255|ref|YP_003356640.1| - 6.2e-07 30.1 0.0 1.1e-06 29.3 0.0 1.4 1 1 0 1 1 1 1 Exonuclease Lactamase_B_2 PF12706.7 gi|282164256|ref|YP_003356641.1| - 2.3e-06 27.3 0.0 0.032 13.7 0.0 3.0 3 0 0 3 3 3 2 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|282164256|ref|YP_003356641.1| - 0.00014 21.7 0.1 0.0014 18.5 0.0 2.6 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_3 PF13483.6 gi|282164256|ref|YP_003356641.1| - 0.00068 19.6 0.0 0.013 15.4 0.0 2.6 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|282164256|ref|YP_003356641.1| - 0.00082 19.4 0.0 0.0019 18.2 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF2130 PF09903.9 gi|282164257|ref|YP_003356642.1| - 8.8e-65 218.5 1.3 8.8e-65 218.5 1.3 3.0 2 1 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2130) Atg14 PF10186.9 gi|282164257|ref|YP_003356642.1| - 4.6 6.2 21.4 10 5.1 21.4 1.5 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 HTH_20 PF12840.7 gi|282164258|ref|YP_003356643.1| - 0.0021 18.1 0.0 0.0033 17.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4393 PF14337.6 gi|282164258|ref|YP_003356643.1| - 0.008 16.0 0.2 0.017 14.9 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4393) TrmB PF01978.19 gi|282164258|ref|YP_003356643.1| - 0.029 14.3 0.1 0.077 12.9 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PFOR_II PF17147.4 gi|282164258|ref|YP_003356643.1| - 0.036 14.4 0.0 0.09 13.1 0.0 1.6 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II DUF4430 PF14478.6 gi|282164258|ref|YP_003356643.1| - 0.042 14.4 0.3 0.6 10.8 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4430) SepF PF04472.12 gi|282164258|ref|YP_003356643.1| - 0.13 12.5 0.0 6.4 7.1 0.0 2.4 2 0 0 2 2 2 0 Cell division protein SepF HTH_IclR PF09339.10 gi|282164258|ref|YP_003356643.1| - 0.18 11.7 0.0 0.35 10.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain LUC7 PF03194.15 gi|282164259|ref|YP_003356644.1| - 0.11 12.2 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 LUC7 N_terminus TPR_2 PF07719.17 gi|282164260|ref|YP_003356645.1| - 2.3e-45 149.1 11.1 1.2e-06 28.1 0.1 9.6 9 1 0 9 9 9 8 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282164260|ref|YP_003356645.1| - 3.9e-45 149.9 13.6 3.1e-06 26.8 0.0 9.0 10 0 0 10 10 8 8 Tetratricopeptide repeat TPR_11 PF13414.6 gi|282164260|ref|YP_003356645.1| - 2.6e-42 142.2 17.3 1.7e-08 34.0 0.0 9.0 4 2 5 9 9 9 7 TPR repeat TPR_16 PF13432.6 gi|282164260|ref|YP_003356645.1| - 1.2e-41 141.1 8.5 2.5e-10 40.8 0.7 5.9 2 2 3 6 6 6 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282164260|ref|YP_003356645.1| - 1.3e-34 118.6 16.8 2e-07 31.4 0.3 6.8 2 2 5 7 7 7 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164260|ref|YP_003356645.1| - 2e-34 114.9 17.5 0.00025 21.0 0.0 8.7 9 0 0 9 9 8 7 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282164260|ref|YP_003356645.1| - 1e-32 110.2 7.3 0.00029 21.0 0.0 9.3 9 0 0 9 9 9 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282164260|ref|YP_003356645.1| - 6.6e-31 104.4 11.4 5.1e-06 26.9 0.0 8.8 2 2 7 9 9 9 8 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282164260|ref|YP_003356645.1| - 1.8e-21 76.2 21.6 2.9e-06 27.5 0.2 7.3 4 3 3 7 7 7 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282164260|ref|YP_003356645.1| - 5.8e-21 74.4 6.6 0.0018 18.4 0.4 6.1 3 2 3 6 6 6 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282164260|ref|YP_003356645.1| - 4.4e-18 64.6 19.7 0.016 15.8 0.0 8.8 9 1 0 9 9 9 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|282164260|ref|YP_003356645.1| - 2.6e-15 56.4 11.8 9.1e-06 25.8 0.1 4.5 3 1 2 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|282164260|ref|YP_003356645.1| - 3.5e-15 54.8 9.1 0.0031 17.4 0.0 8.3 8 0 0 8 8 8 2 Tetratricopeptide repeat TPR_20 PF14561.6 gi|282164260|ref|YP_003356645.1| - 8.2e-13 48.5 9.1 0.0056 17.0 0.6 6.8 1 1 6 7 7 7 4 Tetratricopeptide repeat TPR_4 PF07721.14 gi|282164260|ref|YP_003356645.1| - 8.1e-10 38.4 8.9 0.55 11.0 0.1 6.2 6 0 0 6 6 5 4 Tetratricopeptide repeat BTAD PF03704.17 gi|282164260|ref|YP_003356645.1| - 2.7e-07 31.1 3.8 0.33 11.4 0.6 3.8 1 1 2 4 4 4 2 Bacterial transcriptional activator domain TPR_10 PF13374.6 gi|282164260|ref|YP_003356645.1| - 1.1e-05 25.1 18.8 1.8 8.6 0.3 7.7 9 1 0 9 9 8 2 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|282164260|ref|YP_003356645.1| - 1.1e-05 25.2 2.8 0.021 14.6 0.1 4.8 2 2 1 4 4 4 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_21 PF09976.9 gi|282164260|ref|YP_003356645.1| - 2e-05 24.4 13.4 0.012 15.3 0.9 4.4 1 1 3 4 4 4 3 Tetratricopeptide repeat-like domain TPR_3 PF07720.12 gi|282164260|ref|YP_003356645.1| - 2.2e-05 24.3 5.2 0.68 10.0 0.1 4.8 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|282164260|ref|YP_003356645.1| - 5.7e-05 22.5 6.9 0.61 9.2 0.5 4.7 1 1 4 5 5 5 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|282164260|ref|YP_003356645.1| - 9.6e-05 21.5 9.0 0.022 13.7 0.4 3.8 1 1 3 4 4 4 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|282164260|ref|YP_003356645.1| - 0.00011 22.2 3.7 0.17 12.0 0.2 4.5 5 0 0 5 5 3 1 Fis1 C-terminal tetratricopeptide repeat SHNi-TPR PF10516.9 gi|282164260|ref|YP_003356645.1| - 0.0031 16.9 0.2 23 4.6 0.0 5.1 6 0 0 6 6 6 0 SHNi-TPR Lambda_Kil PF06301.11 gi|282164260|ref|YP_003356645.1| - 0.014 15.0 2.8 2 8.1 0.0 3.4 4 0 0 4 4 4 0 Bacteriophage lambda Kil protein RPN7 PF10602.9 gi|282164260|ref|YP_003356645.1| - 0.039 13.7 6.5 0.76 9.5 0.1 3.9 2 1 3 5 5 4 0 26S proteasome subunit RPN7 ANAPC5 PF12862.7 gi|282164260|ref|YP_003356645.1| - 0.04 14.0 1.8 85 3.3 0.0 4.3 2 2 1 3 3 3 0 Anaphase-promoting complex subunit 5 TPR_11 PF13414.6 gi|282164261|ref|YP_003356646.1| - 1.2e-121 396.1 50.9 6.3e-12 45.0 0.1 21.0 13 7 9 22 22 22 19 TPR repeat TPR_2 PF07719.17 gi|282164261|ref|YP_003356646.1| - 6.4e-102 325.7 46.2 4.8e-07 29.4 0.1 23.4 24 0 0 24 24 24 19 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282164261|ref|YP_003356646.1| - 1.4e-91 296.9 46.7 1.9e-06 27.4 0.6 22.6 24 0 0 24 24 23 18 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164261|ref|YP_003356646.1| - 2.7e-72 239.2 24.3 7.8e-10 39.2 0.2 14.2 8 4 7 16 16 16 11 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164261|ref|YP_003356646.1| - 7.8e-70 225.4 39.3 0.00064 19.7 0.0 22.3 24 0 0 24 24 22 15 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282164261|ref|YP_003356646.1| - 2.5e-67 218.5 28.5 6.6e-06 26.2 0.3 19.7 20 0 0 20 20 20 13 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282164261|ref|YP_003356646.1| - 3.7e-59 192.3 21.8 0.0001 22.8 0.0 19.0 6 5 14 20 20 20 12 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282164261|ref|YP_003356646.1| - 1.2e-51 173.1 32.8 2.9e-07 30.9 0.1 12.5 8 4 4 13 13 13 11 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282164261|ref|YP_003356646.1| - 1.5e-36 124.5 38.1 1.3e-06 28.6 0.3 14.7 7 4 8 16 16 16 12 Tetratricopeptide repeat TPR_20 PF14561.6 gi|282164261|ref|YP_003356646.1| - 1.3e-26 92.7 31.0 0.011 16.1 0.0 12.8 8 4 5 13 13 13 9 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282164261|ref|YP_003356646.1| - 5.9e-24 82.3 16.8 0.067 13.3 0.0 16.5 20 0 0 20 20 17 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282164261|ref|YP_003356646.1| - 8.1e-23 80.4 7.5 0.00059 19.9 0.0 9.6 6 4 5 11 11 11 6 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|282164261|ref|YP_003356646.1| - 8.8e-20 70.7 16.9 0.021 15.0 0.0 8.9 5 3 6 11 11 10 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|282164261|ref|YP_003356646.1| - 4.5e-19 67.8 27.2 0.2 12.4 0.2 14.5 17 0 0 17 17 13 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282164261|ref|YP_003356646.1| - 2.5e-18 65.3 46.6 0.1 12.5 0.1 17.1 19 0 0 19 19 17 3 Tetratricopeptide repeat BTAD PF03704.17 gi|282164261|ref|YP_003356646.1| - 1.5e-16 61.1 22.8 0.00019 21.9 0.3 8.5 5 2 3 9 9 9 4 Bacterial transcriptional activator domain TOM20_plant PF06552.12 gi|282164261|ref|YP_003356646.1| - 3.5e-13 49.7 16.8 0.22 11.3 0.1 11.7 4 3 9 13 13 13 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_15 PF13429.6 gi|282164261|ref|YP_003356646.1| - 7e-13 48.4 12.6 6.8e-06 25.5 0.1 6.5 3 3 3 6 6 6 4 Tetratricopeptide repeat FAT PF02259.23 gi|282164261|ref|YP_003356646.1| - 1.1e-05 24.9 4.5 1.3 8.1 0.3 5.9 4 2 1 7 7 7 1 FAT domain TPR_3 PF07720.12 gi|282164261|ref|YP_003356646.1| - 2.7e-05 24.1 1.6 4.8 7.3 0.3 6.8 6 0 0 6 6 5 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|282164261|ref|YP_003356646.1| - 3.8e-05 23.5 24.7 0.08 12.6 1.9 6.9 4 2 2 6 6 6 2 Tetratricopeptide repeat-like domain DUF627 PF04781.12 gi|282164261|ref|YP_003356646.1| - 7.1e-05 22.8 2.7 11 6.1 0.1 6.3 8 0 0 8 8 5 0 Protein of unknown function (DUF627) TPR_5 PF12688.7 gi|282164261|ref|YP_003356646.1| - 7.5e-05 23.0 5.8 0.14 12.4 0.1 5.9 4 2 1 5 5 5 1 Tetratrico peptide repeat TPR_4 PF07721.14 gi|282164261|ref|YP_003356646.1| - 0.00012 22.3 17.4 0.85 10.4 0.7 9.2 10 0 0 10 10 7 1 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|282164261|ref|YP_003356646.1| - 0.00029 20.2 1.9 1.2e+02 2.3 0.0 8.5 11 0 0 11 11 9 0 SHNi-TPR PPR PF01535.20 gi|282164261|ref|YP_003356646.1| - 0.00053 20.1 1.1 97 3.6 0.0 7.6 8 0 0 8 8 6 0 PPR repeat HrpB1_HrpK PF09613.10 gi|282164261|ref|YP_003356646.1| - 0.00063 19.4 3.9 4.2 7.0 0.0 6.0 2 1 6 8 8 8 1 Bacterial type III secretion protein (HrpB1_HrpK) PknG_TPR PF16918.5 gi|282164261|ref|YP_003356646.1| - 0.00086 18.1 2.6 0.0049 15.6 0.3 3.2 2 1 2 4 4 4 1 Protein kinase G tetratricopeptide repeat NatB_MDM20 PF09797.9 gi|282164261|ref|YP_003356646.1| - 0.0025 16.8 0.1 0.006 15.6 0.1 1.6 1 0 0 1 1 1 1 N-acetyltransferase B complex (NatB) non catalytic subunit HLH PF00010.26 gi|282164261|ref|YP_003356646.1| - 0.0029 17.5 1.2 2 8.4 0.2 3.8 3 0 0 3 3 3 1 Helix-loop-helix DNA-binding domain DUF3856 PF12968.7 gi|282164261|ref|YP_003356646.1| - 0.012 15.6 8.7 14 5.7 0.0 7.2 5 3 3 9 9 7 0 Domain of Unknown Function (DUF3856) DUF4736 PF15883.5 gi|282164261|ref|YP_003356646.1| - 0.021 14.5 1.7 5.1 6.8 0.0 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4736) ANAPC5 PF12862.7 gi|282164261|ref|YP_003356646.1| - 0.048 13.7 27.5 7 6.8 0.0 10.7 4 3 3 9 9 9 0 Anaphase-promoting complex subunit 5 IPK PF03770.16 gi|282164261|ref|YP_003356646.1| - 0.11 12.3 0.4 0.21 11.4 0.4 1.5 1 0 0 1 1 1 0 Inositol polyphosphate kinase Rapsyn_N PF10579.9 gi|282164261|ref|YP_003356646.1| - 0.12 12.5 0.2 9.8 6.4 0.0 4.2 4 1 1 5 5 3 0 Rapsyn N-terminal myristoylation and linker region Fis1_TPR_C PF14853.6 gi|282164261|ref|YP_003356646.1| - 0.24 11.5 7.7 11 6.2 0.1 5.5 5 1 1 6 6 5 0 Fis1 C-terminal tetratricopeptide repeat Ubiq-assoc PF09145.10 gi|282164261|ref|YP_003356646.1| - 0.31 11.1 8.0 0.45 10.6 0.4 4.4 4 0 0 4 4 3 0 Ubiquitin-associated FliS PF02561.14 gi|282164261|ref|YP_003356646.1| - 2.7 8.3 7.4 1.7 8.9 0.1 4.1 4 1 0 4 4 3 0 Flagellar protein FliS TPR_11 PF13414.6 gi|282164262|ref|YP_003356647.1| - 2e-40 136.2 29.5 8.5e-06 25.4 0.1 10.4 4 2 7 11 11 11 10 TPR repeat TPR_2 PF07719.17 gi|282164262|ref|YP_003356647.1| - 2.9e-39 130.0 27.8 1.2e-06 28.2 0.2 10.4 10 1 0 10 10 10 7 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282164262|ref|YP_003356647.1| - 3.9e-37 124.0 17.9 1.1e-05 25.4 0.1 9.4 9 1 1 10 10 9 6 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282164262|ref|YP_003356647.1| - 3.8e-33 111.9 26.0 5e-07 29.3 0.3 9.5 9 1 0 9 9 9 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282164262|ref|YP_003356647.1| - 1.8e-32 111.7 18.1 1.4e-07 31.9 2.4 6.9 4 3 3 7 7 7 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164262|ref|YP_003356647.1| - 5.1e-31 104.3 22.6 5.8e-06 26.1 0.3 9.8 9 1 0 9 9 9 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282164262|ref|YP_003356647.1| - 8.2e-29 97.8 21.8 9.2e-07 29.2 0.6 9.9 3 2 7 10 10 10 8 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164262|ref|YP_003356647.1| - 1.7e-25 89.4 13.9 1.4e-06 28.9 2.6 6.5 4 1 3 7 7 7 6 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282164262|ref|YP_003356647.1| - 2.1e-21 75.1 13.9 0.0033 18.0 0.1 8.7 10 0 0 10 10 7 5 Tetratricopeptide repeat TPR_20 PF14561.6 gi|282164262|ref|YP_003356647.1| - 7.8e-21 74.2 9.9 0.00062 20.0 0.0 6.9 3 2 5 8 8 8 6 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282164262|ref|YP_003356647.1| - 1.5e-16 60.5 14.1 0.0013 19.0 0.0 6.5 3 2 3 6 6 6 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|282164262|ref|YP_003356647.1| - 1e-14 54.5 5.7 0.0012 19.0 0.3 4.3 3 1 1 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|282164262|ref|YP_003356647.1| - 4.8e-13 48.2 11.0 0.032 14.2 0.5 7.1 6 1 1 7 7 7 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282164262|ref|YP_003356647.1| - 1e-12 48.0 5.9 0.00041 20.4 0.4 5.2 3 2 0 4 4 4 3 Tetratricopeptide repeat TPR_15 PF13429.6 gi|282164262|ref|YP_003356647.1| - 5.8e-08 32.3 3.0 0.0041 16.4 0.0 4.1 2 2 2 4 4 4 2 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|282164262|ref|YP_003356647.1| - 1.1e-07 31.8 0.2 0.17 11.6 0.0 4.7 4 1 1 5 5 5 2 Plant specific mitochondrial import receptor subunit TOM20 SHNi-TPR PF10516.9 gi|282164262|ref|YP_003356647.1| - 0.0002 20.7 4.2 15 5.2 0.0 5.4 5 0 0 5 5 5 0 SHNi-TPR TPR_10 PF13374.6 gi|282164262|ref|YP_003356647.1| - 0.00061 19.6 14.8 2.4 8.2 0.0 7.0 8 0 0 8 8 8 1 Tetratricopeptide repeat BTAD PF03704.17 gi|282164262|ref|YP_003356647.1| - 0.001 19.6 3.8 19 5.7 0.0 5.0 2 2 4 6 6 6 0 Bacterial transcriptional activator domain SNAP PF14938.6 gi|282164262|ref|YP_003356647.1| - 0.005 16.3 8.2 0.2 11.1 0.8 4.2 2 2 1 3 3 3 1 Soluble NSF attachment protein, SNAP TPR_21 PF09976.9 gi|282164262|ref|YP_003356647.1| - 0.0055 16.4 5.4 1.1 9.0 0.4 3.1 2 2 0 2 2 2 2 Tetratricopeptide repeat-like domain NARP1 PF12569.8 gi|282164262|ref|YP_003356647.1| - 0.0091 15.0 8.2 0.79 8.6 0.9 4.1 2 2 1 4 4 4 1 NMDA receptor-regulated protein 1 PG_binding_4 PF12229.8 gi|282164262|ref|YP_003356647.1| - 0.013 15.8 0.1 0.26 11.6 0.0 2.7 2 0 0 2 2 2 0 Putative peptidoglycan binding domain ChAPs PF09295.10 gi|282164262|ref|YP_003356647.1| - 0.022 13.8 0.0 0.21 10.6 0.0 2.3 2 1 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) DUF410 PF04190.13 gi|282164262|ref|YP_003356647.1| - 0.035 13.9 2.3 3.1 7.5 0.2 3.2 2 2 1 3 3 3 0 Protein of unknown function (DUF410) Lambda_Kil PF06301.11 gi|282164262|ref|YP_003356647.1| - 0.044 13.4 8.4 1.1 8.9 0.0 5.2 6 0 0 6 6 6 0 Bacteriophage lambda Kil protein FAT PF02259.23 gi|282164262|ref|YP_003356647.1| - 0.047 12.9 0.3 0.49 9.5 0.5 2.3 2 2 0 2 2 2 0 FAT domain Fis1_TPR_C PF14853.6 gi|282164262|ref|YP_003356647.1| - 0.091 12.8 0.1 0.091 12.8 0.1 4.8 5 1 1 6 6 5 0 Fis1 C-terminal tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|282164262|ref|YP_003356647.1| - 0.11 12.6 4.1 0.078 13.0 0.8 2.5 3 1 0 3 3 3 0 Putative TPR-like repeat DUF3856 PF12968.7 gi|282164262|ref|YP_003356647.1| - 0.11 12.5 1.5 1.9 8.6 0.0 3.5 5 0 0 5 5 4 0 Domain of Unknown Function (DUF3856) Vta1_C PF18097.1 gi|282164262|ref|YP_003356647.1| - 0.12 12.1 2.0 3.8 7.3 0.1 3.3 3 0 0 3 3 3 0 Vta1 C-terminal domain Peptidase_M3_N PF08439.10 gi|282164262|ref|YP_003356647.1| - 0.21 11.9 3.3 6.4 7.1 0.2 3.7 3 0 0 3 3 3 0 Oligopeptidase F PUB_1 PF18486.1 gi|282164262|ref|YP_003356647.1| - 0.31 10.9 1.6 0.55 10.1 0.2 2.2 2 0 0 2 2 1 0 PNGase/UBA- or UBX-containing domain T3SchapCesA PF11439.8 gi|282164262|ref|YP_003356647.1| - 1.6 8.9 4.8 0.71 10.1 0.2 2.7 4 1 0 4 4 2 0 Type III secretion system filament chaperone CesA RPN7 PF10602.9 gi|282164262|ref|YP_003356647.1| - 4.6 6.9 9.9 5.7 6.6 0.0 4.0 4 1 0 4 4 4 0 26S proteasome subunit RPN7 TPR_4 PF07721.14 gi|282164262|ref|YP_003356647.1| - 5.3 8.0 8.7 20 6.1 0.0 5.4 7 0 0 7 7 6 0 Tetratricopeptide repeat PPR PF01535.20 gi|282164262|ref|YP_003356647.1| - 5.9 7.4 9.7 3.3 8.1 0.1 4.9 6 0 0 6 6 6 0 PPR repeat ParE_toxin PF05016.15 gi|282164263|ref|YP_003356648.1| - 0.006 17.2 0.1 0.0073 16.9 0.1 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE RHH_8 PF17723.1 gi|282164264|ref|YP_003356649.1| - 3.2e-05 24.1 0.0 3.3e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|282164264|ref|YP_003356649.1| - 0.0003 21.2 0.0 0.00038 20.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH RHH_1 PF01402.21 gi|282164264|ref|YP_003356649.1| - 0.015 15.2 0.4 0.075 13.0 0.0 2.2 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family Unstab_antitox PF09720.10 gi|282164264|ref|YP_003356649.1| - 0.016 15.3 0.4 0.027 14.5 0.4 1.6 1 1 0 1 1 1 0 Putative addiction module component Hyccin PF09790.9 gi|282164264|ref|YP_003356649.1| - 0.04 13.0 0.0 0.04 13.0 0.0 1.0 1 0 0 1 1 1 0 Hyccin MltA PF03562.17 gi|282164264|ref|YP_003356649.1| - 0.041 13.6 0.1 0.042 13.6 0.1 1.2 1 0 0 1 1 1 0 MltA specific insert domain Sec2p PF06428.11 gi|282164265|ref|YP_003356650.1| - 0.032 14.2 0.1 0.061 13.3 0.1 1.4 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p DUF5119 PF17145.4 gi|282164265|ref|YP_003356650.1| - 0.098 12.6 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5119) DUF2201_N PF13203.6 gi|282164266|ref|YP_003356651.1| - 7.1e-38 130.8 0.0 9.4e-38 130.4 0.0 1.1 1 0 0 1 1 1 1 Putative metallopeptidase domain DUF2201 PF09967.9 gi|282164266|ref|YP_003356651.1| - 6.1e-20 71.6 0.0 9.1e-20 71.0 0.0 1.3 1 0 0 1 1 1 1 VWA-like domain (DUF2201) AAA_5 PF07728.14 gi|282164267|ref|YP_003356652.1| - 0.0021 18.0 0.0 0.0059 16.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|282164267|ref|YP_003356652.1| - 0.032 14.1 0.0 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TPR_11 PF13414.6 gi|282164268|ref|YP_003356653.1| - 9.8e-10 38.0 1.1 1.5e-05 24.5 0.2 2.1 1 1 1 2 2 2 2 TPR repeat TPR_1 PF00515.28 gi|282164268|ref|YP_003356653.1| - 3.1e-07 29.9 4.1 0.00051 19.8 0.2 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282164268|ref|YP_003356653.1| - 9.1e-07 28.8 2.2 3e-06 27.2 0.2 2.3 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282164268|ref|YP_003356653.1| - 2.4e-05 24.1 3.4 0.0008 19.3 0.1 2.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282164268|ref|YP_003356653.1| - 0.00075 20.1 0.3 0.17 12.8 0.2 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282164268|ref|YP_003356653.1| - 0.0031 17.4 0.5 0.045 13.8 0.0 2.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282164268|ref|YP_003356653.1| - 0.028 14.7 1.4 0.067 13.5 0.5 2.0 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164268|ref|YP_003356653.1| - 0.029 14.6 3.8 5.4 7.5 0.1 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164268|ref|YP_003356653.1| - 0.03 15.0 0.4 0.045 14.4 0.1 1.4 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282164269|ref|YP_003356654.1| - 1e-07 31.5 1.0 0.0022 18.0 0.0 2.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|282164269|ref|YP_003356654.1| - 2.3e-07 30.4 0.1 5e-07 29.3 0.1 1.6 1 0 0 1 1 1 1 TPR repeat TPR_17 PF13431.6 gi|282164269|ref|YP_003356654.1| - 3.8e-07 30.0 0.0 1.3e-06 28.4 0.0 1.8 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282164269|ref|YP_003356654.1| - 2.7e-06 26.9 0.3 0.0054 16.5 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164269|ref|YP_003356654.1| - 3.9e-06 27.4 0.0 5.6e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164269|ref|YP_003356654.1| - 8.4e-06 25.6 0.7 0.061 13.6 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282164269|ref|YP_003356654.1| - 2.7e-05 24.6 0.1 0.034 15.0 0.0 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282164269|ref|YP_003356654.1| - 7.2e-05 23.2 0.1 0.0032 18.0 0.2 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282164269|ref|YP_003356654.1| - 0.0019 18.7 0.2 0.0024 18.3 0.2 1.3 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282164269|ref|YP_003356654.1| - 0.0049 17.0 0.0 0.0059 16.7 0.0 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|282164269|ref|YP_003356654.1| - 0.018 14.8 0.1 0.027 14.2 0.1 1.5 1 1 0 1 1 1 0 Plant specific mitochondrial import receptor subunit TOM20 Glyco_transf_7C PF02709.14 gi|282164269|ref|YP_003356654.1| - 0.15 11.7 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase SRI PF08236.11 gi|282164270|ref|YP_003356655.1| - 0.029 14.5 3.0 0.11 12.7 0.3 2.7 1 1 1 2 2 2 0 SRI (Set2 Rpb1 interacting) domain Phosphodiest PF01663.22 gi|282164271|ref|YP_003356656.1| - 1.3e-11 44.7 0.0 1.3e-10 41.5 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|282164271|ref|YP_003356656.1| - 0.02 15.0 0.1 1.1 9.4 0.1 2.4 2 0 0 2 2 2 0 PglZ domain GAD-like PF08887.11 gi|282164271|ref|YP_003356656.1| - 0.071 12.9 0.0 19 5.1 0.0 2.8 3 0 0 3 3 3 0 GAD-like domain DEAD PF00270.29 gi|282164272|ref|YP_003356657.1| - 3.4e-16 59.5 0.0 3.4e-11 43.2 0.0 2.9 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|282164272|ref|YP_003356657.1| - 3.9e-14 52.9 0.1 1e-12 48.4 0.0 3.3 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|282164272|ref|YP_003356657.1| - 0.0013 19.5 0.4 0.0051 17.5 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) ADK_lid PF05191.14 gi|282164272|ref|YP_003356657.1| - 0.0085 16.1 2.5 0.0085 16.1 2.5 4.8 5 1 0 5 5 5 1 Adenylate kinase, active site lid DZR PF12773.7 gi|282164272|ref|YP_003356657.1| - 0.0087 16.1 5.3 0.0087 16.1 5.3 4.4 4 2 0 4 4 4 1 Double zinc ribbon TackOD1 PF18551.1 gi|282164272|ref|YP_003356657.1| - 0.15 11.7 12.3 1.6 8.4 1.3 4.1 4 0 0 4 4 4 0 Thaumarchaeal output domain 1 Desulfoferrod_N PF06397.12 gi|282164272|ref|YP_003356657.1| - 4.2 7.1 9.4 0.63 9.7 0.5 3.2 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.10 gi|282164272|ref|YP_003356657.1| - 5.2 7.3 23.9 3.2 8.0 0.1 6.5 7 0 0 7 7 7 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|282164272|ref|YP_003356657.1| - 9.2 6.1 21.5 0.78 9.5 0.6 5.1 5 0 0 5 5 5 0 zinc-ribbon domain DUF1002 PF06207.11 gi|282164273|ref|YP_003356658.1| - 4.9 6.6 9.9 9.3 5.7 0.7 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1002) ATP13 PF12921.7 gi|282164274|ref|YP_003356659.1| - 0.014 15.2 0.5 0.028 14.3 0.4 1.5 1 1 0 1 1 1 0 Mitochondrial ATPase expression Hydrolase_3 PF08282.12 gi|282164275|ref|YP_003356660.1| - 0.003 17.4 0.1 0.015 15.1 0.0 1.8 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|282164275|ref|YP_003356660.1| - 0.097 12.8 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase MethyltransfD12 PF02086.15 gi|282164276|ref|YP_003356661.1| - 1.5e-57 195.2 9.5 1.8e-57 195.0 9.5 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.18 gi|282164277|ref|YP_003356662.1| - 4.5e-17 62.5 1.6 4.2e-10 39.7 0.5 2.0 2 0 0 2 2 2 2 DNA methylase Methyltransf_11 PF08241.12 gi|282164277|ref|YP_003356662.1| - 9.2e-06 26.2 0.0 0.00019 22.0 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282164277|ref|YP_003356662.1| - 0.00022 21.0 0.0 0.00028 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282164277|ref|YP_003356662.1| - 0.0025 18.5 0.0 0.018 15.8 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|282164277|ref|YP_003356662.1| - 0.0048 16.6 0.2 0.12 12.1 0.2 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 HATPase_c PF02518.26 gi|282164279|ref|YP_003356664.1| - 0.00012 22.5 0.0 0.00014 22.3 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TPR_2 PF07719.17 gi|282164280|ref|YP_003356665.1| - 2.3e-25 86.6 16.1 1.8e-05 24.5 1.0 7.5 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164280|ref|YP_003356665.1| - 1.5e-19 70.3 22.7 3e-06 27.8 0.1 5.1 3 1 3 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282164280|ref|YP_003356665.1| - 1.5e-18 67.1 19.5 1.4e-06 28.7 0.0 5.3 4 1 2 6 6 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282164280|ref|YP_003356665.1| - 7.9e-18 63.6 25.8 5.2e-07 30.0 1.2 7.9 2 2 6 8 8 8 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|282164280|ref|YP_003356665.1| - 1.6e-17 62.9 14.0 1.9e-08 33.8 2.4 7.5 5 3 3 8 8 8 2 TPR repeat TPR_8 PF13181.6 gi|282164280|ref|YP_003356665.1| - 1e-15 56.5 1.9 0.00013 21.9 0.1 6.4 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282164280|ref|YP_003356665.1| - 3.1e-12 46.0 10.5 0.056 13.8 0.7 6.4 5 2 2 7 7 7 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282164280|ref|YP_003356665.1| - 1.9e-10 40.7 7.1 1.1 10.0 0.1 6.3 7 0 0 7 7 5 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282164280|ref|YP_003356665.1| - 3.2e-10 39.4 17.5 1.4e-05 24.7 0.7 7.4 7 1 0 7 7 7 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282164280|ref|YP_003356665.1| - 2.7e-06 27.4 17.5 0.42 10.8 0.2 4.6 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_20 PF14561.6 gi|282164280|ref|YP_003356665.1| - 2.5e-05 24.5 8.6 0.028 14.7 0.1 5.6 3 2 3 6 6 5 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282164280|ref|YP_003356665.1| - 0.00016 21.5 5.1 0.52 10.5 0.1 5.2 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282164280|ref|YP_003356665.1| - 0.00016 21.9 13.7 0.073 13.4 1.4 4.4 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_21 PF09976.9 gi|282164280|ref|YP_003356665.1| - 0.028 14.1 0.1 0.028 14.1 0.1 3.5 2 2 2 4 4 4 0 Tetratricopeptide repeat-like domain TPR_4 PF07721.14 gi|282164280|ref|YP_003356665.1| - 0.038 14.6 0.2 0.038 14.6 0.2 4.1 4 0 0 4 4 2 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|282164280|ref|YP_003356665.1| - 0.096 12.9 5.9 29 5.0 0.5 3.9 3 1 2 5 5 5 0 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|282164280|ref|YP_003356665.1| - 0.14 12.3 3.0 6.9 6.8 0.2 3.7 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|282164280|ref|YP_003356665.1| - 0.38 10.7 18.4 0.22 11.5 0.4 5.4 5 0 0 5 5 5 0 Tetratricopeptide repeat Polbeta PF18765.1 gi|282164281|ref|YP_003356666.1| - 9.9e-14 51.2 0.1 1.4e-13 50.7 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|282164281|ref|YP_003356666.1| - 1.7e-10 41.1 0.1 2.1e-10 40.8 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 gi|282164281|ref|YP_003356666.1| - 0.017 15.1 0.0 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain Adenyl_transf PF04439.12 gi|282164281|ref|YP_003356666.1| - 0.037 13.1 0.1 0.05 12.7 0.1 1.2 1 0 0 1 1 1 0 Streptomycin adenylyltransferase HEPN PF05168.14 gi|282164282|ref|YP_003356667.1| - 4e-09 36.6 0.1 7.6e-09 35.7 0.1 1.5 1 1 0 1 1 1 1 HEPN domain LolA_like PF17131.4 gi|282164283|ref|YP_003356668.1| - 0.0003 20.6 1.1 0.00095 19.0 0.2 1.9 1 1 1 2 2 2 1 Outer membrane lipoprotein-sorting protein PAS_4 PF08448.10 gi|282164284|ref|YP_003356669.1| - 7.5e-34 116.3 0.1 7.4e-11 42.3 0.0 5.3 5 0 0 5 5 5 3 PAS fold GAF_2 PF13185.6 gi|282164284|ref|YP_003356669.1| - 1.3e-32 113.0 0.7 6.9e-19 68.5 0.0 3.6 4 0 0 4 4 4 2 GAF domain PAS_3 PF08447.12 gi|282164284|ref|YP_003356669.1| - 1.7e-27 95.5 0.0 1.7e-20 73.1 0.0 3.7 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|282164284|ref|YP_003356669.1| - 1.6e-22 79.6 0.3 1e-08 35.2 0.0 4.4 3 1 1 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|282164284|ref|YP_003356669.1| - 1.6e-20 73.3 0.0 8.3e-07 29.2 0.0 4.0 4 0 0 4 4 3 3 PAS domain HATPase_c PF02518.26 gi|282164284|ref|YP_003356669.1| - 6e-18 65.4 0.0 1.3e-17 64.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|282164284|ref|YP_003356669.1| - 3.5e-14 53.6 0.0 2e-05 25.2 0.0 3.1 3 0 0 3 3 3 2 GAF domain PAS_8 PF13188.7 gi|282164284|ref|YP_003356669.1| - 1.4e-13 50.5 0.1 3.9e-05 23.6 0.0 3.6 3 0 0 3 3 3 3 PAS domain GAF_3 PF13492.6 gi|282164284|ref|YP_003356669.1| - 3e-06 27.6 0.0 0.022 15.1 0.0 2.7 2 0 0 2 2 2 2 GAF domain HATPase_c_2 PF13581.6 gi|282164284|ref|YP_003356669.1| - 5.7e-05 23.1 0.0 0.00026 20.9 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain dCache_1 PF02743.18 gi|282164284|ref|YP_003356669.1| - 0.0045 16.8 0.0 1 9.1 0.0 3.4 3 0 0 3 3 3 1 Cache domain PAS_9 PF13426.7 gi|282164285|ref|YP_003356670.1| - 9.7e-35 119.0 0.0 3.8e-12 46.4 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|282164285|ref|YP_003356670.1| - 5.4e-29 100.3 0.1 4.1e-08 33.4 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|282164285|ref|YP_003356670.1| - 3.6e-28 97.8 0.0 5.5e-09 36.0 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|282164285|ref|YP_003356670.1| - 3.9e-22 78.6 0.0 8.5e-08 32.4 0.0 3.4 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|282164285|ref|YP_003356670.1| - 2.2e-20 73.2 0.0 4.6e-20 72.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|282164285|ref|YP_003356670.1| - 3.9e-20 71.4 0.0 3.7e-05 23.6 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_12 PF18095.1 gi|282164285|ref|YP_003356670.1| - 6.9e-09 35.5 0.0 0.0076 15.9 0.0 3.3 3 0 0 3 3 3 3 UPF0242 C-terminal PAS-like domain MEKHLA PF08670.11 gi|282164285|ref|YP_003356670.1| - 0.00038 20.4 0.2 0.67 9.9 0.0 3.3 3 0 0 3 3 3 2 MEKHLA domain HATPase_c_2 PF13581.6 gi|282164285|ref|YP_003356670.1| - 0.0055 16.7 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain LcrG PF07216.12 gi|282164285|ref|YP_003356670.1| - 0.11 12.4 1.1 21 5.1 0.0 3.7 5 0 0 5 5 5 0 LcrG protein Keratin_2_head PF16208.5 gi|282164286|ref|YP_003356671.1| - 1 9.5 23.1 1.2 9.3 23.1 1.1 1 0 0 1 1 1 0 Keratin type II head PDDEXK_3 PF13366.6 gi|282164287|ref|YP_003356672.1| - 1.4e-43 148.0 0.1 1.6e-43 147.8 0.1 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|282164287|ref|YP_003356672.1| - 0.022 14.9 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF83 TPR_2 PF07719.17 gi|282164288|ref|YP_003356673.1| - 1.1e-24 84.4 5.3 4.4e-05 23.3 0.2 7.0 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282164288|ref|YP_003356673.1| - 2.5e-17 62.1 9.0 0.00086 19.9 0.3 5.8 3 2 3 6 6 6 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164288|ref|YP_003356673.1| - 8.6e-17 59.9 4.8 0.0024 17.9 0.0 4.8 5 0 0 5 5 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164288|ref|YP_003356673.1| - 3.2e-16 59.7 5.7 0.00022 21.8 0.0 4.5 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282164288|ref|YP_003356673.1| - 8.6e-16 58.2 4.6 7.2e-05 23.2 0.5 4.4 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282164288|ref|YP_003356673.1| - 2.3e-15 55.7 7.5 0.00051 19.7 0.1 6.6 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282164288|ref|YP_003356673.1| - 3.1e-14 52.2 2.2 0.0065 16.8 0.0 6.6 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|282164288|ref|YP_003356673.1| - 1.6e-13 50.1 11.0 0.0035 17.0 0.2 7.0 5 2 2 7 7 7 4 TPR repeat TPR_20 PF14561.6 gi|282164288|ref|YP_003356673.1| - 2.3e-11 43.9 5.3 1e-06 29.0 0.6 3.6 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282164288|ref|YP_003356673.1| - 6.2e-11 42.2 3.2 0.019 15.5 0.1 5.5 4 1 0 4 4 4 2 Tetratricopeptide repeat BTAD PF03704.17 gi|282164288|ref|YP_003356673.1| - 8.4e-07 29.5 2.1 0.059 13.8 0.0 3.3 2 1 0 3 3 3 2 Bacterial transcriptional activator domain TPR_12 PF13424.6 gi|282164288|ref|YP_003356673.1| - 1.4e-06 28.5 12.3 0.24 11.7 0.1 4.5 3 3 1 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282164288|ref|YP_003356673.1| - 1e-05 25.6 4.8 0.011 15.8 0.1 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|282164288|ref|YP_003356673.1| - 1.2e-05 25.4 1.0 0.39 11.0 0.1 3.8 2 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|282164288|ref|YP_003356673.1| - 0.00041 20.2 7.7 0.41 10.8 0.1 4.7 5 0 0 5 5 4 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282164288|ref|YP_003356673.1| - 0.00046 20.0 8.2 0.3 11.0 0.1 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat RPN7 PF10602.9 gi|282164288|ref|YP_003356673.1| - 0.0023 17.6 1.2 7.1 6.3 0.0 4.0 3 1 1 4 4 4 1 26S proteasome subunit RPN7 TPR_15 PF13429.6 gi|282164288|ref|YP_003356673.1| - 0.0056 15.9 0.1 9.1 5.4 0.0 3.3 2 1 0 3 3 3 0 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|282164288|ref|YP_003356673.1| - 0.0095 16.0 0.4 13 6.0 0.0 3.4 3 1 0 3 3 3 0 Anaphase-promoting complex subunit 5 DUF4810 PF16068.5 gi|282164288|ref|YP_003356673.1| - 0.082 13.5 0.0 7 7.3 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4810) Paf67 PF10255.9 gi|282164288|ref|YP_003356673.1| - 0.19 10.7 0.0 0.48 9.4 0.0 1.7 1 1 0 1 1 1 0 RNA polymerase I-associated factor PAF67 TPR_4 PF07721.14 gi|282164288|ref|YP_003356673.1| - 0.42 11.4 7.8 50 4.9 0.5 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat MazG-like PF12643.7 gi|282164289|ref|YP_003356674.1| - 1.8e-13 50.5 0.1 2.3e-13 50.2 0.1 1.1 1 0 0 1 1 1 1 MazG-like family MazG PF03819.17 gi|282164289|ref|YP_003356674.1| - 1.6e-06 28.2 0.4 2.6e-06 27.5 0.4 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 gi|282164289|ref|YP_003356674.1| - 0.014 15.8 0.1 0.018 15.4 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase DUF4258 PF14076.6 gi|282164290|ref|YP_003356675.1| - 0.00048 20.5 0.7 0.00054 20.3 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) DUF1694 PF07997.11 gi|282164290|ref|YP_003356675.1| - 0.039 14.0 0.3 4 7.5 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1694) MazE_antitoxin PF04014.18 gi|282164291|ref|YP_003356676.1| - 1.2e-10 41.1 0.5 1.5e-10 40.7 0.5 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin zf-TFIIB PF13453.6 gi|282164291|ref|YP_003356676.1| - 0.00032 20.0 2.5 0.00047 19.4 2.5 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger Rad50_zn_hook PF04423.14 gi|282164291|ref|YP_003356676.1| - 0.0099 15.7 1.4 0.79 9.6 0.2 2.3 2 0 0 2 2 2 1 Rad50 zinc hook motif zf-RING_2 PF13639.6 gi|282164291|ref|YP_003356676.1| - 0.034 14.5 2.3 0.049 14.0 2.3 1.2 1 0 0 1 1 1 0 Ring finger domain DZR PF12773.7 gi|282164291|ref|YP_003356676.1| - 0.047 13.7 1.6 0.07 13.2 1.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon YdjO PF14169.6 gi|282164291|ref|YP_003356676.1| - 0.088 12.5 0.7 0.088 12.5 0.7 2.4 2 0 0 2 2 2 0 Cold-inducible protein YdjO Gin PF10764.9 gi|282164291|ref|YP_003356676.1| - 0.11 12.5 2.1 0.23 11.4 2.1 1.6 1 1 0 1 1 1 0 Inhibitor of sigma-G Gin RecR PF02132.15 gi|282164291|ref|YP_003356676.1| - 0.12 11.9 2.4 3.6 7.2 0.2 2.2 2 0 0 2 2 2 0 RecR protein zinc-ribbons_6 PF07191.12 gi|282164291|ref|YP_003356676.1| - 0.37 10.8 3.7 1.2 9.2 3.7 1.7 1 1 0 1 1 1 0 zinc-ribbons Auto_anti-p27 PF06677.12 gi|282164291|ref|YP_003356676.1| - 0.54 10.5 8.0 2.1 8.6 8.0 1.8 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf_Rg PF17915.1 gi|282164291|ref|YP_003356676.1| - 0.63 9.5 5.9 2.3 7.7 5.9 1.9 1 1 0 1 1 1 0 Reverse gyrase zinc finger PhnA_Zn_Ribbon PF08274.12 gi|282164291|ref|YP_003356676.1| - 0.73 9.8 5.4 1.5 8.9 1.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF3795 PF12675.7 gi|282164292|ref|YP_003356677.1| - 0.0088 16.4 11.5 0.033 14.6 3.7 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3795) TPR_11 PF13414.6 gi|282164293|ref|YP_003356678.1| - 1.1e-34 117.8 3.3 6.5e-10 38.5 0.0 4.8 2 2 2 4 4 4 4 TPR repeat TPR_2 PF07719.17 gi|282164293|ref|YP_003356678.1| - 1.2e-29 100.0 5.5 3.7e-07 29.8 0.0 6.5 6 1 0 6 6 6 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282164293|ref|YP_003356678.1| - 1.7e-28 97.2 7.3 1.8e-07 30.7 0.0 6.4 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282164293|ref|YP_003356678.1| - 9e-28 96.6 14.4 6.8e-11 42.5 0.4 5.2 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282164293|ref|YP_003356678.1| - 1.1e-25 88.0 3.3 0.0001 22.4 0.1 5.7 6 0 0 6 6 5 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282164293|ref|YP_003356678.1| - 2.4e-24 83.9 4.1 4.3e-06 27.1 0.2 6.3 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164293|ref|YP_003356678.1| - 6.5e-24 82.1 13.4 1e-06 28.5 0.1 6.7 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164293|ref|YP_003356678.1| - 2.4e-22 79.3 0.6 6.1e-07 30.0 0.0 4.2 2 1 1 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282164293|ref|YP_003356678.1| - 3.5e-16 59.3 4.1 5.6e-05 23.3 0.0 4.5 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282164293|ref|YP_003356678.1| - 1.4e-15 57.2 2.2 1.5e-06 28.2 0.1 4.1 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_20 PF14561.6 gi|282164293|ref|YP_003356678.1| - 2.1e-14 53.6 6.5 0.0048 17.2 0.9 5.0 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282164293|ref|YP_003356678.1| - 8.1e-14 51.3 6.6 0.0066 17.0 0.1 6.0 6 1 0 6 6 6 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|282164293|ref|YP_003356678.1| - 1.3e-12 47.7 0.2 5e-06 26.6 0.1 3.6 1 1 3 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|282164293|ref|YP_003356678.1| - 1.3e-11 43.7 0.8 0.011 15.7 0.0 5.9 5 2 1 6 6 6 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282164293|ref|YP_003356678.1| - 2.4e-10 39.9 12.7 0.011 15.5 0.1 6.3 7 1 1 8 8 7 3 Tetratricopeptide repeat TPR_15 PF13429.6 gi|282164293|ref|YP_003356678.1| - 3.9e-08 32.8 1.8 4.3e-06 26.2 0.1 2.5 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|282164293|ref|YP_003356678.1| - 3.3e-06 27.2 0.0 4.3 8.2 0.0 5.6 6 0 0 6 6 5 1 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|282164293|ref|YP_003356678.1| - 0.0035 17.4 0.1 3.1 7.9 0.0 3.9 2 1 1 3 3 3 1 Anaphase-promoting complex subunit 5 TPR_MalT PF17874.1 gi|282164293|ref|YP_003356678.1| - 0.0036 16.7 1.3 1.2 8.5 0.3 4.0 2 1 1 4 4 4 2 MalT-like TPR region NARP1 PF12569.8 gi|282164293|ref|YP_003356678.1| - 0.0056 15.7 0.4 0.0056 15.7 0.4 2.9 1 1 2 3 3 3 1 NMDA receptor-regulated protein 1 Alkyl_sulf_dimr PF14863.6 gi|282164293|ref|YP_003356678.1| - 0.0058 17.1 0.4 0.077 13.4 0.1 2.7 1 1 2 3 3 3 1 Alkyl sulfatase dimerisation Fis1_TPR_C PF14853.6 gi|282164293|ref|YP_003356678.1| - 0.018 15.1 4.9 4.6 7.4 0.5 3.9 4 1 1 5 5 5 0 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.17 gi|282164293|ref|YP_003356678.1| - 0.043 14.2 0.1 7.5 7.0 0.0 2.8 1 1 1 3 3 3 0 Bacterial transcriptional activator domain PPR PF01535.20 gi|282164293|ref|YP_003356678.1| - 0.067 13.5 1.0 2.2 8.7 0.0 3.4 3 1 1 4 4 2 0 PPR repeat TOM20_plant PF06552.12 gi|282164293|ref|YP_003356678.1| - 0.095 12.4 0.6 3.1 7.5 0.2 3.0 2 2 1 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 DUF4810 PF16068.5 gi|282164293|ref|YP_003356678.1| - 0.17 12.5 2.8 28 5.3 0.0 4.3 4 1 1 5 5 5 0 Domain of unknown function (DUF4810) GAF_2 PF13185.6 gi|282164294|ref|YP_003356679.1| - 1.5e-16 61.0 0.5 2.2e-16 60.4 0.5 1.3 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|282164294|ref|YP_003356679.1| - 3.9e-14 53.4 0.1 7.1e-14 52.6 0.1 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|282164294|ref|YP_003356679.1| - 1.3e-08 35.3 0.0 2.4e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|282164294|ref|YP_003356679.1| - 3.9e-06 27.2 0.1 6.9e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 GAF domain RCC1 PF00415.18 gi|282164295|ref|YP_003356680.1| - 1.8e-42 143.7 22.1 1.3e-10 41.7 0.2 6.7 7 0 0 7 7 7 5 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|282164295|ref|YP_003356680.1| - 2.2e-38 129.3 25.4 1.1e-08 34.7 1.1 7.3 7 0 0 7 7 7 6 Regulator of chromosome condensation (RCC1) repeat LytB_WW PF18342.1 gi|282164295|ref|YP_003356680.1| - 0.002 18.2 3.2 0.13 12.4 0.1 3.6 4 0 0 4 4 4 1 Endo-beta-N-acetylglucosaminidase LytB WW domain Reg_prop PF07494.11 gi|282164295|ref|YP_003356680.1| - 0.046 13.9 7.9 60 4.4 0.1 5.8 6 0 0 6 6 6 0 Two component regulator propeller DUF1459 PF07312.11 gi|282164295|ref|YP_003356680.1| - 0.57 10.4 0.0 0.57 10.4 0.0 3.9 4 1 0 4 4 4 0 Protein of unknown function (DUF1459) N6_N4_Mtase PF01555.18 gi|282164296|ref|YP_003356681.1| - 1e-45 156.3 0.0 1.4e-45 155.8 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_31 PF13847.6 gi|282164296|ref|YP_003356681.1| - 0.0019 18.0 0.0 0.078 12.8 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|282164296|ref|YP_003356681.1| - 0.0033 17.1 0.0 0.18 11.5 0.0 2.2 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|282164296|ref|YP_003356681.1| - 0.026 15.2 0.0 0.68 10.7 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282164296|ref|YP_003356681.1| - 0.044 14.4 0.0 16 6.3 0.0 2.6 3 0 0 3 3 3 0 Methyltransferase domain DUF2101 PF09874.9 gi|282164297|ref|YP_003356682.1| - 0.019 14.7 1.0 0.031 14.0 1.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) Na_Ca_ex PF01699.24 gi|282164298|ref|YP_003356683.1| - 2.8e-25 89.1 36.4 1.3e-13 51.2 12.7 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein MerC PF03203.14 gi|282164298|ref|YP_003356683.1| - 3.3 8.2 22.3 0.52 10.8 5.8 3.8 2 1 1 3 3 3 0 MerC mercury resistance protein tRNA-synt_1c PF00749.21 gi|282164299|ref|YP_003356684.1| - 1.5e-63 214.6 0.0 1.9e-63 214.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|282164299|ref|YP_003356684.1| - 8e-22 77.9 0.0 2.5e-21 76.3 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain TruB-C_2 PF09157.11 gi|282164299|ref|YP_003356684.1| - 0.062 13.4 0.0 0.22 11.6 0.0 1.9 2 0 0 2 2 2 0 Pseudouridine synthase II TruB, C-terminal TetR_N PF00440.23 gi|282164300|ref|YP_003356685.1| - 5.3e-13 48.5 0.0 1.1e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family ABC_tran PF00005.27 gi|282164301|ref|YP_003356686.1| - 5.9e-25 88.4 0.0 1.2e-24 87.4 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|282164301|ref|YP_003356686.1| - 1.7e-13 51.1 0.2 2.6e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|282164301|ref|YP_003356686.1| - 4.2e-07 30.6 0.0 7.2e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|282164301|ref|YP_003356686.1| - 0.00069 20.2 0.0 0.0011 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|282164301|ref|YP_003356686.1| - 0.0054 16.5 0.0 0.013 15.2 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.22 gi|282164301|ref|YP_003356686.1| - 0.0054 16.4 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.14 gi|282164301|ref|YP_003356686.1| - 0.016 15.1 0.4 2 8.3 0.1 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B T2SSE PF00437.20 gi|282164301|ref|YP_003356686.1| - 0.064 12.3 0.6 0.21 10.6 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_29 PF13555.6 gi|282164301|ref|YP_003356686.1| - 0.067 12.9 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|282164301|ref|YP_003356686.1| - 0.079 12.7 0.0 0.28 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|282164301|ref|YP_003356686.1| - 0.1 12.8 0.0 0.25 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|282164301|ref|YP_003356686.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain DUF3593 PF12159.8 gi|282164302|ref|YP_003356687.1| - 0.02 14.9 0.9 0.08 13.0 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3593) UPF0370 PF13980.6 gi|282164302|ref|YP_003356687.1| - 2.4 8.2 5.0 17 5.5 0.0 3.0 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0370) ABC_tran PF00005.27 gi|282164303|ref|YP_003356688.1| - 9.3e-27 94.2 0.0 1.4e-26 93.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282164303|ref|YP_003356688.1| - 1e-11 45.2 0.1 8.5e-10 38.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|282164303|ref|YP_003356688.1| - 0.0059 17.3 0.1 0.018 15.7 0.1 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) RsgA_GTPase PF03193.16 gi|282164303|ref|YP_003356688.1| - 0.024 14.5 0.1 0.042 13.8 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 gi|282164303|ref|YP_003356688.1| - 0.064 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|282164303|ref|YP_003356688.1| - 0.15 11.8 0.4 0.3 10.9 0.4 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC2_membrane_3 PF12698.7 gi|282164304|ref|YP_003356689.1| - 3.1e-05 23.3 26.9 6e-05 22.3 26.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2070 PF09843.9 gi|282164304|ref|YP_003356689.1| - 2.3 6.4 22.5 4.4 5.5 22.5 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC2_membrane PF01061.24 gi|282164305|ref|YP_003356690.1| - 6.7e-08 32.2 17.4 6.7e-08 32.2 17.4 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|282164305|ref|YP_003356690.1| - 3.1e-05 23.3 19.2 4e-05 22.9 19.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|282164305|ref|YP_003356690.1| - 0.0011 19.0 15.9 0.013 15.5 15.6 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2970 PF11174.8 gi|282164305|ref|YP_003356690.1| - 0.059 13.2 0.9 0.059 13.2 0.9 3.6 4 1 1 5 5 5 0 Protein of unknown function (DUF2970) DUF2070 PF09843.9 gi|282164305|ref|YP_003356690.1| - 5.9 5.1 17.1 6.8 4.8 17.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) RMMBL PF07521.12 gi|282164306|ref|YP_003356691.1| - 1.9e-08 34.1 0.2 1.9e-08 34.1 0.2 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|282164306|ref|YP_003356691.1| - 1e-07 32.2 0.4 2.9e-07 30.7 0.4 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|282164306|ref|YP_003356691.1| - 1e-06 28.5 0.4 5.4e-06 26.1 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain FMN_dh PF01070.18 gi|282164307|ref|YP_003356692.1| - 1e-27 97.1 6.8 5.8e-16 58.4 6.3 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|282164307|ref|YP_003356692.1| - 0.01 15.3 0.2 0.019 14.4 0.2 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase IMPDH PF00478.25 gi|282164307|ref|YP_003356692.1| - 0.16 10.9 8.5 0.051 12.6 0.6 2.8 2 2 1 3 3 3 0 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|282164307|ref|YP_003356692.1| - 1.3 8.0 4.6 2.5 7.2 3.6 1.9 2 1 0 2 2 2 0 Conserved region in glutamate synthase AA_kinase PF00696.28 gi|282164308|ref|YP_003356693.1| - 2.1e-43 148.7 0.6 2.4e-43 148.5 0.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_C PF08544.13 gi|282164309|ref|YP_003356694.1| - 5.8e-16 58.6 0.1 1.2e-15 57.6 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|282164309|ref|YP_003356694.1| - 8.5e-15 54.7 1.2 2.3e-14 53.3 1.2 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 gi|282164309|ref|YP_003356694.1| - 0.00016 21.2 0.0 0.00038 19.9 0.0 1.7 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Memo PF01875.17 gi|282164310|ref|YP_003356695.1| - 1.6e-75 253.8 0.0 1.8e-75 253.6 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|282164310|ref|YP_003356695.1| - 0.011 14.9 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.20 gi|282164311|ref|YP_003356696.1| - 8.4e-28 97.1 0.5 6.1e-15 55.0 1.0 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 DUF4652 PF15525.6 gi|282164311|ref|YP_003356696.1| - 0.068 13.0 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4652) Enolase_C PF00113.22 gi|282164312|ref|YP_003356697.1| - 5.1e-75 252.4 0.1 8.1e-75 251.8 0.1 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|282164312|ref|YP_003356697.1| - 2.3e-32 111.9 2.6 4.9e-32 110.9 0.6 2.4 2 1 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|282164312|ref|YP_003356697.1| - 7e-12 45.4 0.0 1.3e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|282164312|ref|YP_003356697.1| - 0.0049 16.1 0.2 0.0095 15.1 0.0 1.6 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus RNA_pol_Rpb6 PF01192.22 gi|282164313|ref|YP_003356698.1| - 1.9e-12 46.9 0.2 2.5e-12 46.5 0.2 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|282164314|ref|YP_003356699.1| - 5.6e-28 97.0 0.3 6.7e-28 96.8 0.3 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.19 gi|282164315|ref|YP_003356700.1| - 5.8e-31 107.5 0.1 6.5e-31 107.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|282164316|ref|YP_003356701.1| - 7.3e-10 39.2 0.0 4.4e-08 33.4 0.0 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|282164317|ref|YP_003356702.1| - 7.4e-08 32.0 0.0 8.2e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|282164317|ref|YP_003356702.1| - 1.9e-06 28.6 0.1 4e-06 27.5 0.1 1.5 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DNA_gyraseA_C PF03989.13 gi|282164317|ref|YP_003356702.1| - 0.16 11.5 0.1 0.27 10.8 0.1 1.4 1 0 0 1 1 1 0 DNA gyrase C-terminal domain, beta-propeller UPF0179 PF03684.13 gi|282164318|ref|YP_003356703.1| - 1.8e-52 177.0 1.0 2e-52 176.8 1.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|282164318|ref|YP_003356703.1| - 0.059 13.6 0.9 0.73 10.1 0.1 2.2 2 0 0 2 2 2 0 Transposase DDE domain AIRS_C PF02769.22 gi|282164319|ref|YP_003356704.1| - 1.3e-17 64.4 1.4 2.8e-17 63.3 1.4 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|282164319|ref|YP_003356704.1| - 3.3e-08 34.1 1.6 9.2e-08 32.6 1.6 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Response_reg PF00072.24 gi|282164320|ref|YP_003356705.1| - 1.6e-17 63.7 0.3 2.1e-17 63.3 0.3 1.2 1 0 0 1 1 1 1 Response regulator receiver domain RibD_C PF01872.17 gi|282164321|ref|YP_003356706.1| - 4.3e-42 144.2 0.1 4.8e-42 144.1 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain PALP PF00291.25 gi|282164321|ref|YP_003356706.1| - 0.0041 16.6 0.0 0.0069 15.8 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PGF-CTERM PF18204.1 gi|282164322|ref|YP_003356707.1| - 1.3e-05 25.0 3.9 1.3e-05 25.0 3.9 2.1 2 0 0 2 2 2 1 PGF-CTERM motif CarbopepD_reg_2 PF13715.6 gi|282164322|ref|YP_003356707.1| - 0.0046 16.9 2.5 0.0079 16.2 1.3 1.9 2 0 0 2 2 2 1 CarboxypepD_reg-like domain PapD_N PF00345.20 gi|282164322|ref|YP_003356707.1| - 0.034 14.0 0.0 0.058 13.3 0.0 1.3 1 0 0 1 1 1 0 Pili and flagellar-assembly chaperone, PapD N-terminal domain HTH_45 PF14947.6 gi|282164323|ref|YP_003356708.1| - 1.5e-07 31.3 0.1 2.3e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|282164323|ref|YP_003356708.1| - 0.00021 21.1 0.0 0.0006 19.6 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|282164323|ref|YP_003356708.1| - 0.059 13.3 0.0 0.67 9.9 0.0 2.2 1 1 0 1 1 1 0 MarR family DUF3759 PF12585.8 gi|282164323|ref|YP_003356708.1| - 0.096 12.7 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3759) tRNA-synt_2c PF01411.19 gi|282164324|ref|YP_003356709.1| - 1.4e-10 40.4 0.1 1.8e-10 40.0 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|282164324|ref|YP_003356709.1| - 2.1e-07 30.9 0.1 4.5e-07 29.9 0.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Peptidase_M29 PF02073.15 gi|282164325|ref|YP_003356710.1| - 7.8e-12 44.7 0.0 1.9e-07 30.2 0.0 2.2 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) MoCF_biosynth PF00994.24 gi|282164326|ref|YP_003356711.1| - 4.6e-36 123.6 0.0 6.1e-36 123.2 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain Pyr_redox_2 PF07992.14 gi|282164326|ref|YP_003356711.1| - 0.14 11.3 0.1 0.19 10.9 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ATP-sulfurylase PF01747.17 gi|282164329|ref|YP_003356714.1| - 1.8e-69 233.5 0.1 3.4e-69 232.5 0.1 1.4 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|282164329|ref|YP_003356714.1| - 3.2e-35 121.2 0.0 4.9e-35 120.5 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain MIF4G_like PF09088.11 gi|282164329|ref|YP_003356714.1| - 0.034 13.9 0.1 0.061 13.1 0.1 1.3 1 0 0 1 1 1 0 MIF4G like RecR PF02132.15 gi|282164329|ref|YP_003356714.1| - 0.11 12.1 0.8 0.23 11.0 0.8 1.6 1 0 0 1 1 1 0 RecR protein Trypsin_2 PF13365.6 gi|282164330|ref|YP_003356715.1| - 5.4e-34 118.2 0.3 7.5e-34 117.8 0.3 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|282164330|ref|YP_003356715.1| - 8.3e-16 58.1 0.0 1.6e-15 57.1 0.0 1.5 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|282164330|ref|YP_003356715.1| - 3.8e-14 53.0 0.0 1.1e-13 51.6 0.0 1.6 1 1 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 gi|282164330|ref|YP_003356715.1| - 1.8e-09 37.3 0.0 4.5e-09 36.0 0.0 1.7 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|282164330|ref|YP_003356715.1| - 4.7e-09 36.5 0.0 1.5e-08 34.8 0.0 2.0 1 0 0 1 1 1 1 PDZ domain Peptidase_S46 PF10459.9 gi|282164330|ref|YP_003356715.1| - 1.6e-07 30.4 0.3 0.0031 16.3 0.1 2.1 2 0 0 2 2 2 2 Peptidase S46 Peptidase_S7 PF00949.21 gi|282164330|ref|YP_003356715.1| - 0.053 13.3 0.1 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease GRASP55_65 PF04495.14 gi|282164330|ref|YP_003356715.1| - 0.083 13.2 0.0 0.17 12.2 0.0 1.6 1 1 0 1 1 1 0 GRASP55/65 PDZ-like domain CxxCxxCC PF03692.15 gi|282164331|ref|YP_003356716.1| - 1.2e-07 32.3 0.3 1.9e-07 31.6 0.3 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Metallophos PF00149.28 gi|282164332|ref|YP_003356717.1| - 2.1e-06 28.4 0.2 3.1e-06 27.8 0.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|282164332|ref|YP_003356717.1| - 3.4e-05 24.1 0.0 4.8e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF2112 PF09885.9 gi|282164332|ref|YP_003356717.1| - 0.11 12.5 0.0 0.26 11.3 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2112) DUF1910 PF08928.10 gi|282164333|ref|YP_003356718.1| - 0.017 15.1 0.0 0.11 12.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1910) SNO PF01174.19 gi|282164334|ref|YP_003356719.1| - 1.3e-50 171.9 0.0 1.5e-50 171.7 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|282164334|ref|YP_003356719.1| - 8.2e-11 41.9 0.0 1.1e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|282164334|ref|YP_003356719.1| - 1.7e-05 24.6 0.1 3.8e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 Peptidase family S51 GATase PF00117.28 gi|282164334|ref|YP_003356719.1| - 2.6e-05 24.1 0.0 0.00011 22.0 0.0 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|282164334|ref|YP_003356719.1| - 0.03 14.1 0.1 0.05 13.4 0.1 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|282164334|ref|YP_003356719.1| - 0.15 11.8 0.1 0.82 9.4 0.1 2.4 1 1 0 1 1 1 0 Peptidase C26 HATPase_c PF02518.26 gi|282164335|ref|YP_003356720.1| - 1.7e-20 73.6 0.0 3e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|282164335|ref|YP_003356720.1| - 1.4e-08 34.9 0.0 8.1e-08 32.5 0.0 2.2 1 1 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|282164335|ref|YP_003356720.1| - 3.4e-07 30.5 0.0 1.1e-06 28.8 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS PF00989.25 gi|282164335|ref|YP_003356720.1| - 4.6e-06 26.6 0.0 9.6e-05 22.4 0.0 2.5 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|282164335|ref|YP_003356720.1| - 0.00056 19.9 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF515 PF04415.12 gi|282164335|ref|YP_003356720.1| - 0.028 12.8 0.0 0.034 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) PAS_10 PF13596.6 gi|282164335|ref|YP_003356720.1| - 0.05 14.2 0.0 0.69 10.5 0.0 2.3 2 0 0 2 2 2 0 PAS domain PAS_8 PF13188.7 gi|282164335|ref|YP_003356720.1| - 0.058 13.4 0.0 0.17 12.0 0.0 1.8 1 0 0 1 1 1 0 PAS domain HATPase_c_5 PF14501.6 gi|282164335|ref|YP_003356720.1| - 0.061 13.2 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 GHKL domain PAS_7 PF12860.7 gi|282164335|ref|YP_003356720.1| - 0.089 13.0 0.1 1.9 8.7 0.1 2.4 2 0 0 2 2 2 0 PAS fold HATPase_c_3 PF13589.6 gi|282164335|ref|YP_003356720.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|282164335|ref|YP_003356720.1| - 0.54 10.3 2.4 5.4 7.1 0.7 2.4 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain Prenyltrans PF00432.21 gi|282164336|ref|YP_003356721.1| - 3.9e-17 61.7 0.0 0.0013 18.4 0.0 4.3 4 0 0 4 4 4 4 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_C PF13243.6 gi|282164336|ref|YP_003356721.1| - 4e-13 49.2 0.2 2e-08 33.7 0.0 2.9 2 1 0 2 2 2 2 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 gi|282164336|ref|YP_003356721.1| - 2.6e-06 26.8 0.0 0.026 13.6 0.0 3.2 3 0 0 3 3 3 3 Squalene-hopene cyclase N-terminal domain TED_complement PF07678.14 gi|282164336|ref|YP_003356721.1| - 2.8e-05 23.3 0.0 2.6 7.0 0.0 3.8 2 1 2 4 4 4 3 A-macroglobulin TED domain AXE1 PF05448.12 gi|282164337|ref|YP_003356722.1| - 7.8e-10 37.9 0.0 1.4e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.8 gi|282164337|ref|YP_003356722.1| - 3e-07 29.9 0.2 3.1e-06 26.6 0.2 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|282164337|ref|YP_003356722.1| - 6e-05 22.6 1.0 0.00018 21.0 1.0 1.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 gi|282164337|ref|YP_003356722.1| - 9.1e-05 22.1 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.11 gi|282164337|ref|YP_003356722.1| - 0.00075 19.5 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal TMEM190 PF15431.6 gi|282164337|ref|YP_003356722.1| - 0.0045 17.1 0.1 0.0072 16.5 0.1 1.3 1 0 0 1 1 1 1 Transmembrane protein 190 Abhydrolase_3 PF07859.13 gi|282164337|ref|YP_003356722.1| - 0.0069 16.3 0.1 0.018 14.9 0.0 1.7 2 1 0 2 2 2 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|282164337|ref|YP_003356722.1| - 0.007 16.0 0.7 0.028 14.0 0.6 1.8 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) DHQS PF01959.16 gi|282164338|ref|YP_003356723.1| - 2e-140 467.7 0.3 2.3e-140 467.5 0.3 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II OapA PF04225.12 gi|282164338|ref|YP_003356723.1| - 0.0052 16.9 0.1 0.13 12.4 0.0 2.8 1 1 0 2 2 2 1 Opacity-associated protein A LysM-like domain SH3_14 PF18343.1 gi|282164338|ref|YP_003356723.1| - 0.062 13.4 0.0 0.19 11.8 0.0 1.8 2 0 0 2 2 2 0 Dda helicase SH3 domain IMPDH PF00478.25 gi|282164338|ref|YP_003356723.1| - 0.088 11.8 2.9 0.081 11.9 0.9 1.9 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Rep_fac-A_3 PF08661.11 gi|282164338|ref|YP_003356723.1| - 0.11 12.9 0.0 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 Replication factor A protein 3 FlpD PF02662.16 gi|282164338|ref|YP_003356723.1| - 0.13 12.2 0.1 1.6 8.7 0.0 2.3 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit DUF1953 PF09196.10 gi|282164338|ref|YP_003356723.1| - 0.16 11.8 0.5 7.3 6.5 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1953) DeoC PF01791.9 gi|282164339|ref|YP_003356724.1| - 3.9e-63 213.2 0.1 4.6e-63 213.0 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase PadR PF03551.14 gi|282164341|ref|YP_003356726.1| - 1.5e-18 66.5 0.6 3.5e-18 65.3 0.1 1.9 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|282164341|ref|YP_003356726.1| - 2.8e-06 27.9 0.1 6.6e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 gi|282164341|ref|YP_003356726.1| - 7.6e-05 22.8 0.2 0.00057 20.0 0.0 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|282164341|ref|YP_003356726.1| - 0.00017 21.5 0.2 0.63 10.1 0.1 2.4 1 1 1 2 2 2 2 Winged helix-turn-helix DUF4364 PF14277.6 gi|282164341|ref|YP_003356726.1| - 0.00082 19.2 0.8 0.5 10.1 0.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4364) DUF505 PF04458.12 gi|282164341|ref|YP_003356726.1| - 0.0017 16.8 0.6 0.003 16.0 0.3 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF505) Replic_Relax PF13814.6 gi|282164341|ref|YP_003356726.1| - 0.012 15.7 0.0 0.038 14.1 0.0 1.7 1 1 1 2 2 2 0 Replication-relaxation FUR PF01475.19 gi|282164341|ref|YP_003356726.1| - 0.015 15.4 0.0 0.053 13.7 0.0 1.7 1 1 0 1 1 1 0 Ferric uptake regulator family DUF1495 PF07381.11 gi|282164341|ref|YP_003356726.1| - 0.12 12.3 0.2 0.58 10.0 0.1 2.3 2 1 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) UbiA PF01040.18 gi|282164342|ref|YP_003356727.1| - 1.5e-14 54.0 22.1 3.4e-14 52.8 22.0 1.5 1 1 0 1 1 1 1 UbiA prenyltransferase family PadR PF03551.14 gi|282164343|ref|YP_003356728.1| - 6.6e-20 70.9 0.2 1.3e-19 69.9 0.2 1.5 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|282164343|ref|YP_003356728.1| - 9.5e-07 29.5 0.0 1.6e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 gi|282164343|ref|YP_003356728.1| - 0.00068 19.8 0.1 0.0034 17.5 0.0 2.2 3 0 0 3 3 3 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|282164343|ref|YP_003356728.1| - 0.0026 17.8 0.1 0.035 14.2 0.0 2.0 1 1 1 2 2 2 1 Replication-relaxation DUF505 PF04458.12 gi|282164343|ref|YP_003356728.1| - 0.014 13.8 0.3 0.051 11.9 0.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF505) HTH_45 PF14947.6 gi|282164343|ref|YP_003356728.1| - 0.02 14.8 0.0 0.96 9.5 0.0 2.3 1 1 1 2 2 2 0 Winged helix-turn-helix PDT PF00800.18 gi|282164344|ref|YP_003356729.1| - 2.1e-54 184.1 0.0 2.6e-54 183.8 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|282164344|ref|YP_003356729.1| - 3.7e-10 39.4 0.0 6.2e-10 38.7 0.0 1.4 1 0 0 1 1 1 1 ACT domain ArsB PF02040.15 gi|282164345|ref|YP_003356730.1| - 2.6e-40 139.0 37.4 3.5e-40 138.6 37.4 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein CitMHS PF03600.16 gi|282164345|ref|YP_003356730.1| - 5.2e-35 121.1 80.0 7.6e-30 104.1 44.2 1.9 1 1 1 2 2 2 2 Citrate transporter PQ-loop PF04193.14 gi|282164346|ref|YP_003356731.1| - 2.2e-09 36.9 4.0 2.6e-09 36.7 3.6 1.3 1 1 0 1 1 1 1 PQ loop repeat MtN3_slv PF03083.16 gi|282164346|ref|YP_003356731.1| - 7.4e-08 32.3 3.8 9e-08 32.1 3.8 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange LAB_N PF07578.11 gi|282164346|ref|YP_003356731.1| - 0.0034 17.4 0.7 0.0046 17.0 0.7 1.2 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain ER_lumen_recept PF00810.18 gi|282164346|ref|YP_003356731.1| - 0.032 15.1 0.3 0.032 15.1 0.3 1.4 2 0 0 2 2 2 0 ER lumen protein retaining receptor PAS_4 PF08448.10 gi|282164347|ref|YP_003356732.1| - 3.8e-31 107.6 0.1 2.8e-16 59.7 0.1 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|282164347|ref|YP_003356732.1| - 1.4e-24 86.3 0.0 4.3e-14 52.6 0.1 2.9 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|282164347|ref|YP_003356732.1| - 7.3e-22 77.5 0.0 9.1e-12 45.0 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|282164347|ref|YP_003356732.1| - 5.5e-14 51.8 0.0 1.9e-06 27.7 0.0 3.0 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|282164347|ref|YP_003356732.1| - 4.4e-13 49.3 0.2 2e-08 34.4 0.1 3.0 2 0 0 2 2 2 2 PAS fold PAS_7 PF12860.7 gi|282164347|ref|YP_003356732.1| - 0.0019 18.3 0.0 0.082 13.1 0.0 3.0 3 0 0 3 3 3 1 PAS fold CBM60 PF16841.5 gi|282164347|ref|YP_003356732.1| - 0.0099 16.3 0.0 5 7.6 0.0 2.8 2 0 0 2 2 2 1 Ca-dependent carbohydrate-binding module xylan-binding HD_3 PF13023.6 gi|282164347|ref|YP_003356732.1| - 0.054 13.4 0.5 0.17 11.8 0.5 1.9 1 0 0 1 1 1 0 HD domain GyrI-like PF06445.15 gi|282164347|ref|YP_003356732.1| - 0.063 13.6 0.2 0.2 11.9 0.2 1.8 1 0 0 1 1 1 0 GyrI-like small molecule binding domain Glu_synthase PF01645.17 gi|282164348|ref|YP_003356733.1| - 1.4e-07 31.0 0.1 5.7e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase CarboxypepD_reg PF13620.6 gi|282164349|ref|YP_003356734.1| - 0.0018 18.5 0.0 0.0026 18.0 0.0 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4516 PF14990.6 gi|282164349|ref|YP_003356734.1| - 0.15 11.8 0.1 0.25 11.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4516) Glyco_hydro_65m PF03632.15 gi|282164350|ref|YP_003356735.1| - 0.013 14.4 0.4 0.015 14.1 0.4 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 65 central catalytic domain HEAT_2 PF13646.6 gi|282164351|ref|YP_003356736.1| - 3.8e-25 88.1 3.7 9.2e-15 54.8 0.2 2.0 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.22 gi|282164351|ref|YP_003356736.1| - 2.2e-12 46.1 0.2 0.0065 16.6 0.1 4.0 4 0 0 4 4 4 3 HEAT repeat HEAT_PBS PF03130.16 gi|282164351|ref|YP_003356736.1| - 3.2e-11 42.8 3.9 0.00067 20.1 0.0 3.7 4 0 0 4 4 4 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|282164351|ref|YP_003356736.1| - 7.4e-09 35.9 0.7 0.018 15.6 0.1 3.8 4 0 0 4 4 4 2 HEAT-like repeat Adaptin_N PF01602.20 gi|282164351|ref|YP_003356736.1| - 0.00024 19.8 0.3 0.00044 18.9 0.3 1.4 1 1 0 1 1 1 1 Adaptin N terminal region Cnd1 PF12717.7 gi|282164351|ref|YP_003356736.1| - 0.0003 20.9 0.4 0.0029 17.7 0.3 2.3 1 1 0 1 1 1 1 non-SMC mitotic condensation complex subunit 1 Aconitase_B_N PF11791.8 gi|282164351|ref|YP_003356736.1| - 0.053 13.6 0.5 1.8 8.6 0.3 2.1 1 1 1 2 2 2 0 Aconitate B N-terminal domain Ribosomal_S6e PF01092.19 gi|282164352|ref|YP_003356737.1| - 3.9e-42 143.2 0.1 4.8e-42 142.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e DUF150 PF02576.17 gi|282164353|ref|YP_003356738.1| - 0.15 12.5 1.6 0.37 11.2 1.5 1.8 1 1 0 1 1 1 0 RimP N-terminal domain DUF732 PF05305.14 gi|282164355|ref|YP_003356740.1| - 0.19 12.1 1.2 0.22 11.9 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF732) DUF934 PF06073.12 gi|282164357|ref|YP_003356742.1| - 0.14 12.1 0.1 0.24 11.3 0.1 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF934) DUF945 PF06097.11 gi|282164365|ref|YP_003356750.1| - 6.6 5.7 4.2 7.9 5.5 4.2 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) DUF2207 PF09972.9 gi|282164369|ref|YP_003356754.1| - 0.0093 14.8 0.7 0.0093 14.8 0.7 2.7 1 1 2 3 3 3 1 Predicted membrane protein (DUF2207) MCR_beta_N PF02783.15 gi|282164369|ref|YP_003356754.1| - 0.021 14.5 0.2 0.031 13.9 0.2 1.2 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain Viral_Beta_CD PF04530.12 gi|282164369|ref|YP_003356754.1| - 3.7 7.9 5.7 0.87 9.9 0.5 2.3 2 1 1 3 3 3 0 Viral Beta C/D like family PadR PF03551.14 gi|282164370|ref|YP_003356755.1| - 1.4e-20 73.0 0.3 1.9e-20 72.6 0.3 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HxlR PF01638.17 gi|282164370|ref|YP_003356755.1| - 0.00013 21.8 0.0 0.00015 21.5 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|282164370|ref|YP_003356755.1| - 0.0015 18.7 0.0 0.002 18.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PMT_2 PF13231.6 gi|282164371|ref|YP_003356756.1| - 3.6e-12 46.8 7.4 3.6e-12 46.8 7.4 4.0 4 1 1 5 5 5 2 Dolichyl-phosphate-mannose-protein mannosyltransferase TMEM239 PF15841.5 gi|282164371|ref|YP_003356756.1| - 0.027 14.4 0.2 0.027 14.4 0.2 2.5 2 1 1 3 3 3 0 Transmembrane protein 239 family DUF4131 PF13567.6 gi|282164372|ref|YP_003356757.1| - 0.028 14.0 0.9 0.028 14.0 0.9 5.4 3 2 3 6 6 6 0 Domain of unknown function (DUF4131) DUF2735 PF10931.8 gi|282164372|ref|YP_003356757.1| - 2.5 8.9 3.8 1.3 9.8 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2735) FKBP_C PF00254.28 gi|282164373|ref|YP_003356758.1| - 1.9e-15 56.9 0.6 6.8e-15 55.2 0.3 2.1 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|282164373|ref|YP_003356758.1| - 0.00058 19.9 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 FKBP26_C-terminal MinE PF03776.14 gi|282164374|ref|YP_003356759.1| - 0.0062 16.5 0.1 0.011 15.7 0.1 1.4 1 0 0 1 1 1 1 Septum formation topological specificity factor MinE DUF5420 PF17457.2 gi|282164374|ref|YP_003356759.1| - 0.054 13.4 0.0 0.061 13.2 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5420) FKBP_C PF00254.28 gi|282164375|ref|YP_003356760.1| - 2.7e-16 59.7 2.3 1.5e-13 50.9 0.2 2.5 1 1 1 2 2 2 2 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|282164375|ref|YP_003356760.1| - 0.00042 20.4 0.5 0.00097 19.2 0.5 1.7 1 0 0 1 1 1 1 FKBP26_C-terminal 2TM PF13239.6 gi|282164378|ref|YP_003356763.1| - 0.00038 20.7 11.8 0.00044 20.5 0.6 2.1 1 1 1 2 2 2 2 2TM domain DUF4235 PF14019.6 gi|282164378|ref|YP_003356763.1| - 0.079 13.0 0.8 0.24 11.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4235) CYTH PF01928.21 gi|282164380|ref|YP_003356765.1| - 7.4e-34 117.2 1.2 8.5e-34 117.0 1.2 1.0 1 0 0 1 1 1 1 CYTH domain Nitroreductase PF00881.24 gi|282164381|ref|YP_003356766.1| - 5.4e-37 127.5 0.4 7.6e-33 114.0 0.4 2.0 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|282164381|ref|YP_003356766.1| - 1.4e-13 50.9 0.0 7.1e-06 25.7 0.0 2.9 2 1 0 2 2 2 2 Putative TM nitroreductase ACT PF01842.25 gi|282164382|ref|YP_003356767.1| - 0.00012 21.7 0.3 0.00032 20.4 0.0 1.8 2 0 0 2 2 2 1 ACT domain UPF0180 PF03698.13 gi|282164382|ref|YP_003356767.1| - 0.087 13.0 0.0 0.19 11.9 0.0 1.8 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) SAP PF02037.27 gi|282164382|ref|YP_003356767.1| - 0.1 12.4 0.5 7 6.5 0.0 2.5 2 0 0 2 2 2 0 SAP domain Homoserine_dh PF00742.19 gi|282164383|ref|YP_003356768.1| - 1.8e-54 184.2 0.0 2.9e-54 183.6 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|282164383|ref|YP_003356768.1| - 1.9e-15 57.5 0.1 3.1e-15 56.9 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|282164383|ref|YP_003356768.1| - 2.3e-08 34.1 0.3 4.8e-08 33.0 0.3 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.22 gi|282164383|ref|YP_003356768.1| - 1.2e-05 26.1 0.1 2.5e-05 25.1 0.1 1.5 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_N PF00044.24 gi|282164383|ref|YP_003356768.1| - 5e-05 23.6 0.2 0.00012 22.4 0.2 1.6 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DXP_reductoisom PF02670.16 gi|282164383|ref|YP_003356768.1| - 6e-05 23.8 0.2 0.014 16.1 0.2 2.9 1 1 1 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Sacchrp_dh_NADP PF03435.18 gi|282164383|ref|YP_003356768.1| - 0.00036 20.8 0.3 0.00083 19.6 0.3 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|282164383|ref|YP_003356768.1| - 0.00093 19.6 0.1 0.004 17.6 0.1 2.1 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain DUF1611_N PF17396.2 gi|282164383|ref|YP_003356768.1| - 0.0019 18.4 0.0 0.0052 17.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_N) Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 gi|282164383|ref|YP_003356768.1| - 0.0035 16.9 1.3 0.0085 15.7 1.2 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|282164383|ref|YP_003356768.1| - 0.0084 16.7 0.2 0.041 14.5 0.2 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|282164383|ref|YP_003356768.1| - 0.01 16.1 0.1 0.024 14.9 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_2 PF03446.15 gi|282164383|ref|YP_003356768.1| - 0.049 13.8 0.1 0.088 13.0 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase cwf18 PF08315.12 gi|282164383|ref|YP_003356768.1| - 0.094 13.4 0.7 0.17 12.6 0.7 1.3 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor PglD_N PF17836.1 gi|282164383|ref|YP_003356768.1| - 0.16 12.6 0.4 0.16 12.6 0.4 2.1 3 0 0 3 3 1 0 PglD N-terminal domain DUF2520 PF10728.9 gi|282164384|ref|YP_003356769.1| - 0.14 11.9 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2520) Zn_Tnp_IS1595 PF12760.7 gi|282164385|ref|YP_003356770.1| - 0.072 13.1 0.2 13 5.9 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ACC PF17848.1 gi|282164385|ref|YP_003356770.1| - 0.092 12.8 4.6 1.5 8.9 0.4 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_4 PF13717.6 gi|282164385|ref|YP_003356770.1| - 0.28 11.2 2.7 2 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Radical_SAM PF04055.21 gi|282164386|ref|YP_003356771.1| - 2.4e-14 54.1 0.3 5.7e-14 52.8 0.3 1.7 1 1 0 1 1 1 1 Radical SAM superfamily LIAS_N PF16881.5 gi|282164386|ref|YP_003356771.1| - 1.4e-05 25.4 0.1 4e-05 24.0 0.1 1.7 2 0 0 2 2 2 1 N-terminal domain of lipoyl synthase of Radical_SAM family TetR_C_35 PF18556.1 gi|282164386|ref|YP_003356771.1| - 0.13 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial Tetracyclin repressor, C-terminal domain E1_dh PF00676.20 gi|282164387|ref|YP_003356772.1| - 4.2e-86 288.6 0.0 4.9e-86 288.4 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|282164387|ref|YP_003356772.1| - 3.9e-05 23.0 0.0 6.1e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|282164387|ref|YP_003356772.1| - 0.028 14.2 0.1 0.21 11.4 0.1 2.1 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transket_pyr PF02779.24 gi|282164388|ref|YP_003356773.1| - 7.3e-45 152.8 0.3 1.1e-44 152.2 0.3 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|282164388|ref|YP_003356773.1| - 2.7e-39 133.9 0.0 5.1e-39 133.0 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|282164388|ref|YP_003356773.1| - 0.00038 20.7 0.0 0.00085 19.6 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II 2-oxoacid_dh PF00198.23 gi|282164389|ref|YP_003356774.1| - 6.1e-85 284.4 0.0 7.7e-85 284.0 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|282164389|ref|YP_003356774.1| - 8.9e-24 83.1 3.2 1.9e-23 82.1 3.2 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|282164389|ref|YP_003356774.1| - 3.1e-14 53.0 0.1 6.6e-14 52.0 0.1 1.6 1 0 0 1 1 1 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|282164389|ref|YP_003356774.1| - 8.4e-08 31.9 2.2 0.00095 19.0 0.1 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like GCV_H PF01597.19 gi|282164389|ref|YP_003356774.1| - 0.00013 21.8 0.8 0.00031 20.6 0.8 1.7 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|282164389|ref|YP_003356774.1| - 0.008 16.1 0.9 0.021 14.8 0.9 1.7 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.6 gi|282164389|ref|YP_003356774.1| - 0.011 16.4 3.0 2.4 8.9 0.4 2.6 1 1 1 2 2 2 0 HlyD family secretion protein HlyD_D23 PF16576.5 gi|282164389|ref|YP_003356774.1| - 0.02 14.1 0.4 1.1 8.5 0.2 2.3 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion Peptidase_M23 PF01551.22 gi|282164389|ref|YP_003356774.1| - 0.062 13.5 0.3 1.9 8.7 0.1 2.4 2 0 0 2 2 2 0 Peptidase family M23 DUF2868 PF11067.8 gi|282164389|ref|YP_003356774.1| - 0.076 12.5 2.7 0.1 12.1 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) ATP-synt_ab_Xtn PF16886.5 gi|282164389|ref|YP_003356774.1| - 0.12 12.2 0.6 0.3 11.0 0.6 1.6 1 0 0 1 1 1 0 ATPsynthase alpha/beta subunit N-term extension SWI-SNF_Ssr4 PF08549.10 gi|282164389|ref|YP_003356774.1| - 0.7 8.5 2.5 0.93 8.0 2.5 1.1 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1750) Pyr_redox_2 PF07992.14 gi|282164390|ref|YP_003356775.1| - 4.9e-45 154.0 1.0 4.9e-45 154.0 1.0 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|282164390|ref|YP_003356775.1| - 5.2e-33 113.6 0.2 1.1e-32 112.6 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|282164390|ref|YP_003356775.1| - 5e-14 52.6 0.5 7.1e-09 36.1 0.1 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|282164390|ref|YP_003356775.1| - 4.8e-10 39.4 0.5 8.1e-09 35.3 0.4 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|282164390|ref|YP_003356775.1| - 2.5e-09 36.8 0.3 0.0019 17.5 0.2 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|282164390|ref|YP_003356775.1| - 8.7e-09 34.9 4.6 4e-08 32.8 0.6 2.8 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|282164390|ref|YP_003356775.1| - 1.1e-08 35.2 2.4 0.00021 21.4 0.6 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|282164390|ref|YP_003356775.1| - 2.5e-07 30.1 1.2 2.5e-07 30.1 1.2 2.0 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|282164390|ref|YP_003356775.1| - 7.7e-07 28.1 5.1 1.2e-05 24.2 0.2 3.2 2 1 1 3 3 3 1 HI0933-like protein Trp_halogenase PF04820.14 gi|282164390|ref|YP_003356775.1| - 4.9e-05 22.4 1.7 0.001 18.0 0.1 2.8 3 0 0 3 3 3 1 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|282164390|ref|YP_003356775.1| - 8.4e-05 22.0 1.9 0.00016 21.0 0.6 1.9 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 gi|282164390|ref|YP_003356775.1| - 0.00025 21.0 2.2 0.23 11.4 0.2 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|282164390|ref|YP_003356775.1| - 0.00026 20.7 3.4 0.00056 19.6 0.4 2.8 3 1 1 4 4 4 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|282164390|ref|YP_003356775.1| - 0.00081 18.7 0.2 0.00081 18.7 0.2 2.7 3 1 1 4 4 4 1 Thi4 family NAD_binding_7 PF13241.6 gi|282164390|ref|YP_003356775.1| - 0.0014 19.0 1.0 0.38 11.2 0.1 2.9 3 0 0 3 3 3 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|282164390|ref|YP_003356775.1| - 0.014 14.5 0.2 0.014 14.5 0.2 2.7 2 1 2 4 4 4 0 Lycopene cyclase protein RraB PF06877.11 gi|282164390|ref|YP_003356775.1| - 0.036 14.8 0.0 0.21 12.3 0.0 2.0 2 0 0 2 2 2 0 Regulator of ribonuclease activity B UDPG_MGDP_dh_N PF03721.14 gi|282164390|ref|YP_003356775.1| - 0.041 13.4 0.3 2.2 7.8 0.3 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|282164390|ref|YP_003356775.1| - 0.21 10.8 3.0 0.67 9.2 1.1 2.6 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|282164390|ref|YP_003356775.1| - 0.26 11.3 2.2 1 9.3 0.1 2.6 2 1 1 3 3 3 0 FAD-NAD(P)-binding BPL_LplA_LipB PF03099.19 gi|282164391|ref|YP_003356776.1| - 2.6e-15 56.5 0.0 4.1e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Rhodanese PF00581.20 gi|282164393|ref|YP_003356778.1| - 1.4e-16 60.9 0.0 1.9e-16 60.5 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain AMP-binding PF00501.28 gi|282164394|ref|YP_003356779.1| - 2.6e-110 368.9 0.0 3.1e-110 368.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|282164394|ref|YP_003356779.1| - 3.6e-18 66.3 0.0 7.5e-18 65.3 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain FeoA PF04023.14 gi|282164394|ref|YP_003356779.1| - 0.11 12.7 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 FeoA domain AMP-binding_C_2 PF14535.6 gi|282164395|ref|YP_003356780.1| - 3.5e-29 100.9 0.0 7.9e-29 99.8 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|282164395|ref|YP_003356780.1| - 1.9e-09 36.7 0.1 2.7e-09 36.1 0.1 1.2 1 0 0 1 1 1 1 AMP-binding enzyme DDE_Tnp_1 PF01609.21 gi|282164396|ref|YP_003356781.1| - 1.8e-09 37.6 2.6 3.7e-09 36.5 2.6 1.5 1 1 0 1 1 1 1 Transposase DDE domain Vfa1 PF08432.10 gi|282164396|ref|YP_003356781.1| - 0.14 12.4 5.9 2.9 8.2 2.7 2.2 2 0 0 2 2 2 0 AAA-ATPase Vps4-associated protein 1 DUF2284 PF10050.9 gi|282164397|ref|YP_003356782.1| - 1.1e-47 161.8 0.2 1.3e-47 161.6 0.2 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) DUF202 PF02656.15 gi|282164398|ref|YP_003356783.1| - 0.044 14.2 0.6 0.057 13.9 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF202) LMSTEN PF07988.12 gi|282164399|ref|YP_003356784.1| - 0.079 12.5 0.6 0.16 11.4 0.6 1.5 1 0 0 1 1 1 0 LMSTEN motif Glutaredoxin PF00462.24 gi|282164400|ref|YP_003356785.1| - 5.5e-13 48.9 0.1 8.3e-13 48.4 0.1 1.3 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|282164400|ref|YP_003356785.1| - 3e-07 30.4 0.5 4.6e-07 29.8 0.5 1.3 1 1 0 1 1 1 1 Thioredoxin domain GST_N_3 PF13417.6 gi|282164400|ref|YP_003356785.1| - 2.8e-05 24.5 0.0 2.9e-05 24.4 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_4 PF13462.6 gi|282164400|ref|YP_003356785.1| - 0.0013 18.9 0.1 0.37 10.9 0.0 2.0 2 0 0 2 2 2 2 Thioredoxin DUF836 PF05768.14 gi|282164400|ref|YP_003356785.1| - 0.0022 18.4 0.1 0.0027 18.1 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 gi|282164400|ref|YP_003356785.1| - 0.0062 17.0 0.2 0.3 11.6 0.2 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain DUF4438 PF14505.6 gi|282164400|ref|YP_003356785.1| - 0.11 11.5 0.0 0.11 11.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) MFS_1 PF07690.16 gi|282164401|ref|YP_003356786.1| - 3.7e-55 187.3 55.1 1.3e-38 132.9 34.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|282164401|ref|YP_003356786.1| - 2.4e-12 46.5 23.8 4.7e-07 29.0 13.6 2.2 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|282164401|ref|YP_003356786.1| - 4.2e-09 35.8 37.8 1.5e-08 34.0 17.5 2.5 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|282164401|ref|YP_003356786.1| - 2.4e-08 33.0 32.4 2.8e-05 22.9 33.2 3.0 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_4 PF06779.14 gi|282164401|ref|YP_003356786.1| - 3.3e-06 26.7 30.0 0.00017 21.0 9.3 3.0 2 1 1 3 3 3 2 Uncharacterised MFS-type transporter YbfB PUCC PF03209.15 gi|282164401|ref|YP_003356786.1| - 0.00074 18.6 8.7 0.00074 18.6 8.7 3.0 2 1 1 3 3 3 1 PUCC protein MFS_3 PF05977.13 gi|282164401|ref|YP_003356786.1| - 0.0015 17.0 25.4 0.024 13.0 5.2 3.2 3 0 0 3 3 3 3 Transmembrane secretion effector DUF2530 PF10745.9 gi|282164401|ref|YP_003356786.1| - 4 7.7 12.5 0.38 11.0 1.1 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2530) NIR_SIR PF01077.22 gi|282164402|ref|YP_003356787.1| - 5.7e-31 107.2 0.0 7.3e-31 106.8 0.0 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|282164402|ref|YP_003356787.1| - 3.9e-15 55.5 0.0 6.9e-15 54.7 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain FMN_red PF03358.15 gi|282164403|ref|YP_003356788.1| - 1.6e-22 79.9 0.0 2.2e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|282164403|ref|YP_003356788.1| - 1.7e-10 40.9 0.0 2.3e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Vel1p PF10339.9 gi|282164403|ref|YP_003356788.1| - 0.044 13.2 0.1 0.071 12.5 0.1 1.3 1 0 0 1 1 1 0 Yeast-specific zinc responsive HypA PF01155.19 gi|282164403|ref|YP_003356788.1| - 0.051 13.6 0.4 0.13 12.3 0.4 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MazG-like PF12643.7 gi|282164404|ref|YP_003356789.1| - 0.0075 16.5 0.3 0.01 16.1 0.3 1.2 1 0 0 1 1 1 1 MazG-like family HypA PF01155.19 gi|282164405|ref|YP_003356790.1| - 0.0005 20.1 7.7 0.081 12.9 2.5 2.2 2 0 0 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ISL3 PF14690.6 gi|282164405|ref|YP_003356790.1| - 0.0013 19.4 6.3 0.12 13.1 0.0 2.9 3 0 0 3 3 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ogr_Delta PF04606.12 gi|282164405|ref|YP_003356790.1| - 0.01 15.8 3.7 0.99 9.4 0.1 3.4 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger DZR PF12773.7 gi|282164405|ref|YP_003356790.1| - 0.029 14.4 13.9 1.4 9.0 13.3 2.5 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|282164405|ref|YP_003356790.1| - 0.038 13.4 15.8 0.34 10.4 0.2 3.7 3 1 0 3 3 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|282164405|ref|YP_003356790.1| - 0.051 13.3 10.6 0.39 10.5 0.9 3.0 3 0 0 3 3 3 0 zinc-ribbon domain T4_baseplate PF12322.8 gi|282164405|ref|YP_003356790.1| - 0.084 12.3 2.8 0.077 12.4 1.8 1.5 1 1 0 1 1 1 0 T4 bacteriophage base plate protein DUF2752 PF10825.8 gi|282164405|ref|YP_003356790.1| - 0.094 12.8 0.4 17 5.6 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) Zn-ribbon_8 PF09723.10 gi|282164405|ref|YP_003356790.1| - 0.1 12.7 17.4 0.11 12.6 0.5 2.9 2 1 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|282164405|ref|YP_003356790.1| - 0.32 11.0 12.8 0.15 12.0 1.3 3.5 3 0 0 3 3 3 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|282164405|ref|YP_003356790.1| - 0.4 11.1 7.6 0.75 10.3 0.0 3.0 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 FYDLN_acid PF09538.10 gi|282164405|ref|YP_003356790.1| - 0.43 11.3 8.4 1.1 10.0 3.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (FYDLN_acid) zf-RING_7 PF02591.15 gi|282164405|ref|YP_003356790.1| - 0.51 10.6 9.9 0.66 10.2 0.1 3.1 3 0 0 3 3 3 0 C4-type zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|282164405|ref|YP_003356790.1| - 0.52 9.9 13.7 0.41 10.2 0.6 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|282164405|ref|YP_003356790.1| - 0.72 9.9 12.5 49 4.0 12.5 2.5 1 1 0 1 1 1 0 zinc-ribbons DNA_ligase_ZBD PF03119.16 gi|282164405|ref|YP_003356790.1| - 1.5 8.9 12.3 1.7 8.8 0.1 4.0 4 0 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain Ribosomal_L37ae PF01780.19 gi|282164405|ref|YP_003356790.1| - 2.2 8.4 5.8 6.3 7.0 0.3 2.6 2 1 1 3 3 3 0 Ribosomal L37ae protein family Cys_rich_CPXG PF14255.6 gi|282164405|ref|YP_003356790.1| - 2.3 8.2 11.7 3.5 7.6 0.1 3.2 4 0 0 4 4 3 0 Cysteine-rich CPXCG DUF1451 PF07295.11 gi|282164405|ref|YP_003356790.1| - 2.7 8.0 7.8 4.4 7.3 0.1 2.1 2 0 0 2 2 2 0 Zinc-ribbon containing domain Zn_Tnp_IS1595 PF12760.7 gi|282164405|ref|YP_003356790.1| - 3.5 7.7 16.3 0.43 10.6 0.6 3.7 2 2 1 3 3 3 0 Transposase zinc-ribbon domain CpXC PF14353.6 gi|282164405|ref|YP_003356790.1| - 3.6 7.7 8.9 3.6 7.7 0.2 3.2 2 1 1 3 3 3 0 CpXC protein zf-LITAF-like PF10601.9 gi|282164405|ref|YP_003356790.1| - 4.1 7.7 13.1 1.1 9.5 0.2 3.4 2 2 0 2 2 2 0 LITAF-like zinc ribbon domain Cys_rich_KTR PF14205.6 gi|282164405|ref|YP_003356790.1| - 4.7 7.1 7.1 2.3 8.1 0.5 2.7 3 0 0 3 3 3 0 Cysteine-rich KTR zinc_ribbon_10 PF10058.9 gi|282164405|ref|YP_003356790.1| - 8.4 6.2 11.5 5.9 6.7 0.2 3.3 3 0 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein NAD_kinase PF01513.21 gi|282164406|ref|YP_003356791.1| - 8.2e-55 186.1 0.1 9.8e-55 185.8 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|282164406|ref|YP_003356791.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain DUF1801 PF08818.11 gi|282164407|ref|YP_003356792.1| - 9.1e-16 58.1 0.0 1.4e-15 57.6 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DU1801) DUF3420 PF11900.8 gi|282164407|ref|YP_003356792.1| - 0.067 13.3 0.1 0.32 11.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3420) eIF-5a PF01287.20 gi|282164408|ref|YP_003356793.1| - 2.3e-08 34.0 0.2 4.7e-08 33.0 0.2 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|282164408|ref|YP_003356793.1| - 8.8e-07 28.9 0.1 1.4e-06 28.3 0.1 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain Arginase PF00491.21 gi|282164409|ref|YP_003356794.1| - 5.7e-78 262.2 0.0 6.4e-78 262.1 0.0 1.0 1 0 0 1 1 1 1 Arginase family KGG PF10685.9 gi|282164410|ref|YP_003356795.1| - 1.1e-17 63.7 14.4 0.00019 21.6 0.1 4.2 4 0 0 4 4 4 4 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282164410|ref|YP_003356795.1| - 1.1e-08 35.4 17.5 1.5e-06 28.6 11.0 2.1 1 1 1 2 2 2 2 Small hydrophilic plant seed protein TUSC2 PF15000.6 gi|282164410|ref|YP_003356795.1| - 0.0093 16.2 7.1 7.6 6.9 0.1 3.2 1 1 2 3 3 3 3 Tumour suppressor candidate 2 SASP PF00269.20 gi|282164410|ref|YP_003356795.1| - 0.58 10.2 9.7 2.9 8.0 4.5 2.6 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type Rhodopsin_N PF10413.9 gi|282164410|ref|YP_003356795.1| - 4.7 7.1 6.0 29 4.6 0.2 2.9 3 0 0 3 3 3 0 Amino terminal of the G-protein receptor rhodopsin HATPase_c PF02518.26 gi|282164411|ref|YP_003356796.1| - 1.4e-10 41.7 0.0 1.5e-10 41.5 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ribosomal_S13_N PF08069.12 gi|282164412|ref|YP_003356797.1| - 2.1e-24 85.3 0.1 3.8e-24 84.5 0.1 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|282164412|ref|YP_003356797.1| - 3.3e-15 56.0 0.2 5.6e-15 55.3 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 MSV199 PF10553.9 gi|282164412|ref|YP_003356797.1| - 0.038 14.2 0.4 4.2 7.6 0.0 2.1 2 0 0 2 2 2 0 MSV199 domain DHHA1 PF02272.19 gi|282164413|ref|YP_003356798.1| - 2.4e-14 53.9 0.1 5e-14 52.9 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain CDC45 PF02724.14 gi|282164413|ref|YP_003356798.1| - 0.028 12.7 0.2 0.038 12.3 0.2 1.1 1 0 0 1 1 1 0 CDC45-like protein DHH PF01368.20 gi|282164413|ref|YP_003356798.1| - 0.076 13.3 0.2 0.16 12.3 0.2 1.5 1 0 0 1 1 1 0 DHH family AdoMet_dc PF02675.15 gi|282164415|ref|YP_003356800.1| - 7.2e-16 58.4 0.0 8.5e-16 58.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase tRNA-synt_2b PF00587.25 gi|282164416|ref|YP_003356801.1| - 1.5e-34 119.5 0.0 2.6e-34 118.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|282164416|ref|YP_003356801.1| - 6.5e-31 106.8 6.3 1e-30 106.1 6.3 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF5082 PF16888.5 gi|282164416|ref|YP_003356801.1| - 0.083 13.2 2.8 0.13 12.5 2.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) DUF3006 PF11213.8 gi|282164416|ref|YP_003356801.1| - 0.091 13.0 1.2 0.27 11.5 1.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) TPR_MLP1_2 PF07926.12 gi|282164416|ref|YP_003356801.1| - 0.14 12.2 3.3 0.3 11.1 3.3 1.5 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein UPF0242 PF06785.11 gi|282164416|ref|YP_003356801.1| - 0.15 12.1 2.2 0.26 11.4 2.2 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus tRNA-synt_His PF13393.6 gi|282164416|ref|YP_003356801.1| - 0.21 10.8 1.1 1.1 8.5 0.0 2.0 2 0 0 2 2 2 0 Histidyl-tRNA synthetase Cauli_AT PF03233.13 gi|282164416|ref|YP_003356801.1| - 0.34 10.8 2.2 0.57 10.1 2.2 1.3 1 0 0 1 1 1 0 Aphid transmission protein Lactamase_B PF00753.27 gi|282164417|ref|YP_003356802.1| - 6.6e-19 68.7 0.3 1.5e-17 64.3 0.3 2.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|282164417|ref|YP_003356802.1| - 1.3e-05 24.8 0.0 2.9e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|282164417|ref|YP_003356802.1| - 0.02 14.8 0.1 0.039 13.8 0.1 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Glyco_transf_4 PF13439.6 gi|282164417|ref|YP_003356802.1| - 0.11 12.4 0.0 1.1 9.3 0.0 2.1 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Lactamase_B_6 PF16661.5 gi|282164417|ref|YP_003356802.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Phosphodiest PF01663.22 gi|282164418|ref|YP_003356803.1| - 4.2e-22 79.2 0.1 4e-21 76.0 0.1 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|282164418|ref|YP_003356803.1| - 0.0066 16.6 0.0 0.11 12.6 0.0 2.3 2 0 0 2 2 2 1 PglZ domain NUDIX PF00293.28 gi|282164419|ref|YP_003356804.1| - 9.6e-22 77.4 0.1 1.1e-21 77.2 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|282164419|ref|YP_003356804.1| - 0.00062 19.7 0.0 0.00086 19.3 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Response_reg PF00072.24 gi|282164420|ref|YP_003356805.1| - 3.3e-18 65.9 0.0 4.2e-18 65.5 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Prok-JAB PF14464.6 gi|282164421|ref|YP_003356806.1| - 1.6e-09 37.6 0.0 1.8e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain CTP_transf_like PF01467.26 gi|282164422|ref|YP_003356807.1| - 5.2e-17 62.4 0.0 6.2e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like Semialdhyde_dh PF01118.24 gi|282164423|ref|YP_003356808.1| - 2.9e-36 124.5 0.0 8.7e-36 123.0 0.0 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|282164423|ref|YP_003356808.1| - 3.4e-26 92.5 0.0 5.2e-26 91.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.17 gi|282164423|ref|YP_003356808.1| - 3.8e-05 24.2 0.0 9.2e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Epimerase PF01370.21 gi|282164423|ref|YP_003356808.1| - 0.0097 15.4 0.0 0.068 12.6 0.0 2.0 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GFO_IDH_MocA PF01408.22 gi|282164423|ref|YP_003356808.1| - 0.049 14.5 0.0 0.19 12.6 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.6 gi|282164423|ref|YP_003356808.1| - 0.079 12.8 0.0 1.7 8.5 0.0 2.5 3 0 0 3 3 3 0 NAD(P)H-binding KR PF08659.10 gi|282164423|ref|YP_003356808.1| - 0.14 12.1 0.0 0.67 9.8 0.0 2.0 2 0 0 2 2 2 0 KR domain CBS PF00571.28 gi|282164424|ref|YP_003356809.1| - 1.6e-31 108.5 11.1 1.9e-15 57.0 2.5 2.5 3 0 0 3 3 3 2 CBS domain ArgJ PF01960.18 gi|282164425|ref|YP_003356810.1| - 3.5e-133 444.0 6.4 4.1e-133 443.7 6.4 1.0 1 0 0 1 1 1 1 ArgJ family tRNA-synt_His PF13393.6 gi|282164426|ref|YP_003356811.1| - 2.7e-50 171.4 0.0 3.5e-50 171.0 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|282164426|ref|YP_003356811.1| - 1.5e-12 47.5 0.1 3e-12 46.5 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|282164426|ref|YP_003356811.1| - 6.3e-09 36.1 0.0 9.3e-09 35.5 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|282164426|ref|YP_003356811.1| - 0.00054 19.5 0.0 0.0011 18.4 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HATPase_c PF02518.26 gi|282164427|ref|YP_003356812.1| - 3.1e-19 69.5 0.1 9.1e-19 68.0 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|282164427|ref|YP_003356812.1| - 1.2e-11 44.8 0.0 3.6e-11 43.3 0.0 1.9 1 0 0 1 1 1 1 HAMP domain HATPase_c_2 PF13581.6 gi|282164427|ref|YP_003356812.1| - 0.00053 19.9 0.0 0.0017 18.3 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain V_ATPase_I PF01496.19 gi|282164427|ref|YP_003356812.1| - 0.031 12.2 3.0 0.058 11.3 3.0 1.4 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMPIT PF07851.13 gi|282164427|ref|YP_003356812.1| - 0.54 9.5 5.3 4.7 6.4 2.6 2.5 2 0 0 2 2 2 0 TMPIT-like protein DUF1664 PF07889.12 gi|282164427|ref|YP_003356812.1| - 1.4 9.0 8.6 0.91 9.6 2.6 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) HDV_ag PF01517.18 gi|282164427|ref|YP_003356812.1| - 1.7 8.4 4.5 3.3 7.5 4.5 1.4 1 0 0 1 1 1 0 Hepatitis delta virus delta antigen BRE1 PF08647.11 gi|282164427|ref|YP_003356812.1| - 2.3 8.4 14.5 0.13 12.3 7.5 2.4 3 0 0 3 3 3 0 BRE1 E3 ubiquitin ligase 4HB_MCP_1 PF12729.7 gi|282164427|ref|YP_003356812.1| - 2.4 7.7 14.0 0.71 9.4 0.5 4.2 4 0 0 4 4 4 0 Four helix bundle sensory module for signal transduction APG6_N PF17675.1 gi|282164427|ref|YP_003356812.1| - 2.4 8.7 15.3 0.15 12.6 6.1 2.8 3 0 0 3 3 3 0 Apg6 coiled-coil region Smim3 PF17307.2 gi|282164427|ref|YP_003356812.1| - 8.8 5.9 6.4 19 4.9 6.4 1.4 1 0 0 1 1 1 0 Small integral membrane protein 3 NMT1 PF09084.11 gi|282164428|ref|YP_003356813.1| - 1.5e-29 103.5 0.0 2.4e-29 102.8 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 gi|282164428|ref|YP_003356813.1| - 1.6e-13 51.0 0.0 6.8e-13 48.9 0.0 1.9 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.20 gi|282164428|ref|YP_003356813.1| - 3.6e-07 29.9 0.0 8.3e-07 28.6 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|282164428|ref|YP_003356813.1| - 0.0016 18.1 0.0 0.0024 17.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 gi|282164428|ref|YP_003356813.1| - 0.011 15.2 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 NMT1-like family DUF790 PF05626.11 gi|282164429|ref|YP_003356814.1| - 7.1e-125 416.7 0.0 8.3e-125 416.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) DUF1064 PF06356.11 gi|282164429|ref|YP_003356814.1| - 0.026 14.9 0.0 3.4 8.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1064) DUF2312 PF10073.9 gi|282164429|ref|YP_003356814.1| - 0.098 12.3 0.0 0.28 10.8 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2312) ERCC3_RAD25_C PF16203.5 gi|282164430|ref|YP_003356815.1| - 1.4e-22 80.1 0.1 2.2e-22 79.5 0.1 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|282164430|ref|YP_003356815.1| - 4.2e-20 72.4 0.0 2.6e-19 69.9 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit XPB_DRD PF18458.1 gi|282164430|ref|YP_003356815.1| - 7.3e-17 61.0 0.6 3.4e-16 58.9 0.2 2.2 2 0 0 2 2 2 1 Xeroderma pigmentosum group B helicase damage recognition domain Helicase_C PF00271.31 gi|282164430|ref|YP_003356815.1| - 3.1e-15 56.5 0.0 9.2e-15 54.9 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|282164430|ref|YP_003356815.1| - 2.1e-05 24.3 0.0 0.00016 21.5 0.0 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|282164430|ref|YP_003356815.1| - 0.056 13.6 0.0 4.9 7.3 0.0 2.3 2 0 0 2 2 2 0 Helicase C-terminal domain COX7a PF02238.15 gi|282164431|ref|YP_003356816.1| - 0.36 11.3 0.1 0.36 11.3 0.1 2.0 2 1 1 3 3 3 0 Cytochrome c oxidase subunit VII Tubulin PF00091.25 gi|282164433|ref|YP_003356818.1| - 1.1e-38 133.5 1.5 2.4e-38 132.3 1.5 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|282164433|ref|YP_003356818.1| - 7.5e-35 119.1 1.7 1.9e-34 117.8 0.1 2.4 2 1 0 2 2 2 1 FtsZ family, C-terminal domain AA_kinase PF00696.28 gi|282164433|ref|YP_003356818.1| - 0.011 15.4 0.1 0.018 14.7 0.1 1.3 1 0 0 1 1 1 0 Amino acid kinase family Csm1_B PF18211.1 gi|282164433|ref|YP_003356818.1| - 0.17 11.8 0.0 0.42 10.5 0.0 1.6 1 0 0 1 1 1 0 Csm1 subunit domain B Tubulin_2 PF13809.6 gi|282164433|ref|YP_003356818.1| - 8.1 5.5 6.7 6.2 5.9 2.4 2.3 1 1 0 2 2 2 0 Tubulin like DUF3795 PF12675.7 gi|282164434|ref|YP_003356819.1| - 5e-07 30.0 15.7 1.2e-05 25.6 15.7 2.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3795) PolC_DP2 PF03833.13 gi|282164434|ref|YP_003356819.1| - 1.3 6.8 6.5 1.6 6.5 6.5 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 ABC_tran PF00005.27 gi|282164435|ref|YP_003356820.1| - 4.8e-22 79.0 0.0 6.6e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282164435|ref|YP_003356820.1| - 4.5e-10 39.8 0.3 2.2e-05 24.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|282164435|ref|YP_003356820.1| - 0.0059 16.4 0.1 1.6 8.3 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|282164435|ref|YP_003356820.1| - 0.011 16.2 0.1 0.019 15.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|282164435|ref|YP_003356820.1| - 0.015 14.9 0.3 0.028 14.1 0.3 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|282164435|ref|YP_003356820.1| - 0.021 14.6 0.3 0.034 13.9 0.3 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|282164435|ref|YP_003356820.1| - 0.12 11.8 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|282164435|ref|YP_003356820.1| - 0.17 11.3 0.1 0.33 10.3 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|282164435|ref|YP_003356820.1| - 0.17 12.2 0.1 0.32 11.4 0.1 1.4 1 0 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|282164435|ref|YP_003356820.1| - 0.19 11.1 0.0 2.1 7.7 0.1 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain UPF0047 PF01894.17 gi|282164437|ref|YP_003356822.1| - 1.7e-42 144.2 0.0 1.9e-42 144.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 PAS_4 PF08448.10 gi|282164438|ref|YP_003356823.1| - 4.7e-28 97.6 0.0 4.1e-14 52.8 0.0 2.5 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|282164438|ref|YP_003356823.1| - 7.7e-27 93.5 0.0 5e-14 52.3 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|282164438|ref|YP_003356823.1| - 1.8e-25 89.2 0.1 8.3e-13 48.5 0.0 2.3 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|282164438|ref|YP_003356823.1| - 3e-17 62.2 0.0 5.5e-08 32.7 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|282164438|ref|YP_003356823.1| - 1.1e-13 51.3 0.0 7.4e-10 39.0 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_10 PF13596.6 gi|282164438|ref|YP_003356823.1| - 3.4e-07 30.8 0.6 0.0014 19.2 0.0 2.7 2 1 0 2 2 2 2 PAS domain PAS_7 PF12860.7 gi|282164438|ref|YP_003356823.1| - 0.00034 20.8 0.2 0.046 13.9 0.2 3.4 2 2 0 2 2 2 1 PAS fold HTH_20 PF12840.7 gi|282164438|ref|YP_003356823.1| - 0.0004 20.4 0.0 0.00073 19.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|282164438|ref|YP_003356823.1| - 0.00061 19.6 0.1 0.0012 18.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|282164438|ref|YP_003356823.1| - 0.00091 19.0 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|282164438|ref|YP_003356823.1| - 0.0052 16.3 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MEKHLA PF08670.11 gi|282164438|ref|YP_003356823.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 MEKHLA domain TBPIP PF07106.13 gi|282164438|ref|YP_003356823.1| - 0.033 14.1 0.0 0.084 12.8 0.0 1.7 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_35 PF13693.6 gi|282164438|ref|YP_003356823.1| - 0.041 13.9 0.0 0.091 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|282164438|ref|YP_003356823.1| - 0.14 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TPR_12 PF13424.6 gi|282164439|ref|YP_003356824.1| - 2.5e-43 146.2 10.4 2.5e-15 56.5 0.4 3.5 1 1 2 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282164439|ref|YP_003356824.1| - 1.4e-33 113.3 6.3 3.4e-07 29.8 0.0 5.5 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282164439|ref|YP_003356824.1| - 4.8e-29 98.2 5.4 1.8e-05 24.4 0.0 5.8 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282164439|ref|YP_003356824.1| - 2e-27 93.1 4.0 6e-05 22.9 0.0 5.7 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282164439|ref|YP_003356824.1| - 8e-27 92.3 5.5 1e-05 25.2 0.0 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164439|ref|YP_003356824.1| - 1.1e-22 78.2 8.7 4.2e-06 26.5 0.0 6.2 6 0 0 6 6 6 5 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|282164439|ref|YP_003356824.1| - 6.5e-12 45.4 0.9 0.032 14.3 0.0 4.6 2 1 3 5 5 5 3 Anaphase-promoting complex subunit 5 TPR_MalT PF17874.1 gi|282164439|ref|YP_003356824.1| - 6e-10 39.0 0.0 0.00011 21.7 0.0 2.1 1 1 0 2 2 2 2 MalT-like TPR region TPR_11 PF13414.6 gi|282164439|ref|YP_003356824.1| - 1e-09 37.9 9.5 0.062 13.0 0.0 5.7 6 0 0 6 6 5 4 TPR repeat TPR_14 PF13428.6 gi|282164439|ref|YP_003356824.1| - 1.3e-09 38.1 5.0 1.8 9.6 0.1 6.2 5 1 1 6 6 6 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164439|ref|YP_003356824.1| - 2.1e-09 37.9 1.9 0.019 15.6 0.2 5.7 5 1 0 5 5 5 2 Tetratricopeptide repeat RPN7 PF10602.9 gi|282164439|ref|YP_003356824.1| - 1.8e-08 34.3 3.0 0.0048 16.6 0.1 4.0 1 1 3 4 4 4 2 26S proteasome subunit RPN7 TPR_17 PF13431.6 gi|282164439|ref|YP_003356824.1| - 9.8e-08 31.9 2.2 2.7 8.6 0.0 5.8 5 0 0 5 5 5 1 Tetratricopeptide repeat PPR PF01535.20 gi|282164439|ref|YP_003356824.1| - 2.6e-07 30.4 5.4 3.5 8.1 0.0 5.6 5 0 0 5 5 5 2 PPR repeat DUF3856 PF12968.7 gi|282164439|ref|YP_003356824.1| - 4.2e-07 30.1 5.0 0.014 15.5 0.4 3.8 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) AP_endonuc_2 PF01261.24 gi|282164439|ref|YP_003356824.1| - 9.8e-07 28.4 0.7 8.4e-06 25.4 0.2 1.7 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel TPR_6 PF13174.6 gi|282164439|ref|YP_003356824.1| - 1e-06 29.0 1.5 24 5.8 0.1 5.7 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282164439|ref|YP_003356824.1| - 3.8e-06 27.3 2.4 0.002 18.6 0.2 3.7 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_21 PF09976.9 gi|282164439|ref|YP_003356824.1| - 1.5e-05 24.8 0.6 0.0003 20.6 0.0 2.7 2 1 1 3 3 3 1 Tetratricopeptide repeat-like domain SNAP PF14938.6 gi|282164439|ref|YP_003356824.1| - 4.2e-05 23.1 4.3 0.00087 18.8 0.3 2.2 2 0 0 2 2 2 1 Soluble NSF attachment protein, SNAP ANAPC3 PF12895.7 gi|282164439|ref|YP_003356824.1| - 0.002 18.3 2.4 0.36 11.1 0.1 3.5 2 2 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.18 gi|282164439|ref|YP_003356824.1| - 0.0041 17.2 3.8 17 5.5 0.0 5.0 5 0 0 5 5 5 0 MIT (microtubule interacting and transport) domain TPR_3 PF07720.12 gi|282164439|ref|YP_003356824.1| - 0.021 14.8 3.4 22 5.2 0.0 4.4 5 0 0 5 5 5 0 Tetratricopeptide repeat DUF2225 PF09986.9 gi|282164439|ref|YP_003356824.1| - 0.045 13.5 1.4 1.5 8.5 0.4 2.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) ComR_TPR PF18710.1 gi|282164439|ref|YP_003356824.1| - 0.064 12.8 0.3 4.4 6.8 0.0 2.9 1 1 1 3 3 3 0 ComR tetratricopeptide TRAPPC9-Trs120 PF08626.11 gi|282164439|ref|YP_003356824.1| - 0.24 8.7 1.6 12 3.1 0.2 2.9 2 1 1 3 3 3 0 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit DUF4393 PF14337.6 gi|282164440|ref|YP_003356825.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) tRNA-synt_1 PF00133.22 gi|282164441|ref|YP_003356826.1| - 4.5e-63 213.5 0.6 1.8e-43 148.7 0.0 2.4 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|282164441|ref|YP_003356826.1| - 4e-20 72.3 2.4 9.6e-20 71.1 0.6 2.3 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|282164441|ref|YP_003356826.1| - 1.1e-19 70.5 0.2 2e-09 36.7 0.0 4.0 2 2 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|282164441|ref|YP_003356826.1| - 4.9e-09 36.0 0.0 1.2e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|282164441|ref|YP_003356826.1| - 7.1e-08 32.1 0.6 1.6e-05 24.4 0.0 3.1 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|282164441|ref|YP_003356826.1| - 0.0039 16.2 0.0 0.016 14.1 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) DUF1894 PF08979.11 gi|282164441|ref|YP_003356826.1| - 0.6 10.5 2.3 53 4.3 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF1894) Phage_integrase PF00589.22 gi|282164442|ref|YP_003356827.1| - 2.7e-26 92.4 0.0 5.1e-26 91.5 0.0 1.4 2 0 0 2 2 2 1 Phage integrase family GHL6 PF14871.6 gi|282164442|ref|YP_003356827.1| - 0.025 14.7 0.0 10 6.3 0.0 2.3 2 0 0 2 2 2 0 Hypothetical glycosyl hydrolase 6 zf_CopZ PF18423.1 gi|282164442|ref|YP_003356827.1| - 0.15 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Zinc binding domain Ank_2 PF12796.7 gi|282164444|ref|YP_003356829.1| - 1.4e-42 144.2 14.1 5.6e-19 68.5 1.1 4.4 3 1 1 4 4 4 3 Ankyrin repeats (3 copies) Ank PF00023.30 gi|282164444|ref|YP_003356829.1| - 7e-40 133.8 23.4 2.2e-06 27.8 0.2 9.0 9 0 0 9 9 9 6 Ankyrin repeat Ank_5 PF13857.6 gi|282164444|ref|YP_003356829.1| - 3.4e-36 122.8 19.9 2.5e-08 34.0 0.1 6.9 2 1 6 8 8 8 7 Ankyrin repeats (many copies) Ank_4 PF13637.6 gi|282164444|ref|YP_003356829.1| - 1.4e-33 114.8 15.7 1.6e-09 38.1 0.1 6.2 2 2 6 8 8 8 7 Ankyrin repeats (many copies) HEAT_2 PF13646.6 gi|282164444|ref|YP_003356829.1| - 2.5e-28 98.3 8.0 2.6e-08 34.2 0.2 7.5 5 2 2 7 7 7 5 HEAT repeats HEAT_PBS PF03130.16 gi|282164444|ref|YP_003356829.1| - 2.2e-24 83.6 18.1 0.0035 17.9 0.0 12.8 14 1 0 14 14 13 6 PBS lyase HEAT-like repeat Ank_3 PF13606.6 gi|282164444|ref|YP_003356829.1| - 6.8e-24 81.4 18.2 0.0026 18.1 0.0 8.4 9 0 0 9 9 9 6 Ankyrin repeat HEAT PF02985.22 gi|282164444|ref|YP_003356829.1| - 1.4e-10 40.5 0.3 0.014 15.6 0.0 5.5 5 0 0 5 5 5 3 HEAT repeat HEAT_EZ PF13513.6 gi|282164444|ref|YP_003356829.1| - 2.7e-05 24.6 2.2 3 8.5 0.1 5.3 5 0 0 5 5 5 2 HEAT-like repeat Maf_N PF08383.11 gi|282164444|ref|YP_003356829.1| - 8e-05 22.3 0.2 11 5.9 0.0 5.1 6 0 0 6 6 6 1 Maf N-terminal region Arm PF00514.23 gi|282164444|ref|YP_003356829.1| - 0.00088 19.2 0.7 12 6.1 0.0 5.3 4 1 1 5 5 5 1 Armadillo/beta-catenin-like repeat DUF2652 PF10851.8 gi|282164444|ref|YP_003356829.1| - 0.0012 18.9 1.7 7.9 6.6 0.1 3.7 2 1 2 4 4 4 1 Protein of unknown function (DUF2652) Cnd1 PF12717.7 gi|282164444|ref|YP_003356829.1| - 0.0083 16.2 0.1 0.094 12.8 0.1 2.6 1 1 1 2 2 2 1 non-SMC mitotic condensation complex subunit 1 Aconitase_B_N PF11791.8 gi|282164444|ref|YP_003356829.1| - 0.067 13.3 0.1 2.7 8.0 0.0 3.1 2 1 1 3 3 3 0 Aconitate B N-terminal domain D5_N PF08706.11 gi|282164445|ref|YP_003356830.1| - 3.5e-22 79.3 3.5 9.1e-22 77.9 1.3 2.1 2 0 0 2 2 2 1 D5 N terminal like V_ATPase_I_N PF18670.1 gi|282164445|ref|YP_003356830.1| - 0.065 13.6 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 V-type ATPase subunit I, N-terminal domain DUF2690 PF10901.8 gi|282164445|ref|YP_003356830.1| - 0.089 13.1 0.0 0.23 11.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2690) Prim-Pol PF09250.11 gi|282164446|ref|YP_003356831.1| - 4.5e-07 30.4 0.0 1.7e-06 28.5 0.0 1.7 1 1 1 2 2 2 1 Bifunctional DNA primase/polymerase, N-terminal HSDR_N PF04313.14 gi|282164447|ref|YP_003356832.1| - 4.8e-11 43.0 5.7 7.7e-07 29.3 0.1 3.3 2 1 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|282164447|ref|YP_003356832.1| - 5e-11 42.6 0.0 2.1e-10 40.6 0.0 2.1 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) zf_Rg PF17915.1 gi|282164448|ref|YP_003356833.1| - 0.005 16.2 0.4 0.04 13.3 0.6 2.2 2 0 0 2 2 2 1 Reverse gyrase zinc finger Tho2 PF11262.8 gi|282164448|ref|YP_003356833.1| - 0.0063 15.8 0.3 0.0095 15.2 0.3 1.2 1 0 0 1 1 1 1 Transcription factor/nuclear export subunit protein 2 Glyco_hydro_53 PF07745.13 gi|282164448|ref|YP_003356833.1| - 0.02 13.9 0.0 0.024 13.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 53 DUF4996 PF16387.5 gi|282164448|ref|YP_003356833.1| - 0.075 13.5 0.1 0.11 13.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function zf-FPG_IleRS PF06827.14 gi|282164448|ref|YP_003356833.1| - 0.16 11.8 3.4 5.4 7.0 0.2 2.8 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DZR PF12773.7 gi|282164448|ref|YP_003356833.1| - 1.1 9.4 9.7 12 6.0 3.5 2.3 1 1 1 2 2 2 0 Double zinc ribbon DnaJ_CXXCXGXG PF00684.19 gi|282164448|ref|YP_003356833.1| - 1.5 9.2 9.0 14 6.1 5.9 2.6 2 1 0 2 2 2 0 DnaJ central domain HNH PF01844.23 gi|282164449|ref|YP_003356834.1| - 5.4e-09 36.1 6.9 9.1e-09 35.4 6.9 1.4 1 0 0 1 1 1 1 HNH endonuclease NPF PF16601.5 gi|282164449|ref|YP_003356834.1| - 8.6e-05 23.1 1.3 0.0012 19.3 0.1 2.1 2 0 0 2 2 2 1 Rabosyn-5 repeating NPF sequence-motif NinF PF05810.12 gi|282164449|ref|YP_003356834.1| - 0.00089 19.1 0.6 0.79 9.6 0.1 2.3 2 0 0 2 2 2 2 NinF protein DZR PF12773.7 gi|282164449|ref|YP_003356834.1| - 0.0023 17.9 0.3 0.004 17.2 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon DHC_N1 PF08385.12 gi|282164449|ref|YP_003356834.1| - 0.0097 14.6 0.1 0.012 14.3 0.1 1.0 1 0 0 1 1 1 1 Dynein heavy chain, N-terminal region 1 Zn_ribbon_recom PF13408.6 gi|282164449|ref|YP_003356834.1| - 0.019 15.5 1.5 4.2 8.0 0.9 2.3 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.13 gi|282164449|ref|YP_003356834.1| - 0.033 13.9 1.7 5 6.9 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Endonuclease_7 PF02945.15 gi|282164449|ref|YP_003356834.1| - 0.06 13.3 3.9 0.15 12.0 3.9 1.6 1 1 0 1 1 1 0 Recombination endonuclease VII zinc_ribbon_2 PF13240.6 gi|282164449|ref|YP_003356834.1| - 0.092 12.5 1.5 2.1 8.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|282164449|ref|YP_003356834.1| - 0.14 11.8 1.0 6.2 6.5 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-NADH-PPase PF09297.11 gi|282164449|ref|YP_003356834.1| - 0.19 11.4 1.9 0.44 10.2 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ogr_Delta PF04606.12 gi|282164449|ref|YP_003356834.1| - 0.22 11.6 1.3 8.9 6.4 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger PhnA_Zn_Ribbon PF08274.12 gi|282164449|ref|YP_003356834.1| - 0.22 11.5 0.1 0.22 11.5 0.1 1.6 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1451 PF07295.11 gi|282164449|ref|YP_003356834.1| - 0.23 11.5 2.3 0.76 9.8 0.3 2.0 1 1 1 2 2 2 0 Zinc-ribbon containing domain Cytochrome_C7 PF14522.6 gi|282164449|ref|YP_003356834.1| - 0.31 11.0 6.8 1.3 9.0 6.8 1.9 1 1 0 1 1 1 0 Cytochrome c7 and related cytochrome c Paired_CXXCH_1 PF09699.10 gi|282164449|ref|YP_003356834.1| - 0.99 9.2 5.5 0.68 9.7 1.9 2.2 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) Gln_amidase PF15644.6 gi|282164451|ref|YP_003356836.1| - 0.068 14.2 0.0 0.28 12.2 0.0 2.1 1 1 0 1 1 1 0 Papain fold toxin 1, glutamine deamidase DUF5497 PF17601.2 gi|282164451|ref|YP_003356836.1| - 0.079 13.3 0.0 0.24 11.7 0.0 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5497) Cupredoxin_1 PF13473.6 gi|282164452|ref|YP_003356837.1| - 6.4e-14 51.9 0.1 7.8e-14 51.6 0.1 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|282164452|ref|YP_003356837.1| - 7.6e-10 39.1 0.8 0.00015 22.1 0.3 2.1 1 1 1 2 2 2 2 Copper binding proteins, plastocyanin/azurin family PAS_3 PF08447.12 gi|282164453|ref|YP_003356838.1| - 6e-29 100.2 0.0 7.7e-16 58.2 0.0 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|282164453|ref|YP_003356838.1| - 1.9e-19 70.2 0.2 2.7e-18 66.5 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|282164453|ref|YP_003356838.1| - 4.4e-12 46.0 0.0 5e-05 23.3 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|282164453|ref|YP_003356838.1| - 1.4e-09 38.2 0.0 5.5e-06 26.6 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|282164453|ref|YP_003356838.1| - 7.4e-05 23.0 0.0 0.53 10.6 0.0 2.4 2 0 0 2 2 2 2 PAS fold OmpH PF03938.14 gi|282164453|ref|YP_003356838.1| - 0.00014 22.2 2.9 0.16 12.3 0.0 2.3 2 0 0 2 2 2 2 Outer membrane protein (OmpH-like) PAS_8 PF13188.7 gi|282164453|ref|YP_003356838.1| - 0.00058 19.8 0.0 0.0016 18.4 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|282164453|ref|YP_003356838.1| - 0.0013 18.6 0.1 0.0087 16.0 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain ERM PF00769.19 gi|282164453|ref|YP_003356838.1| - 0.5 10.1 8.7 1.1 9.1 8.7 1.4 1 0 0 1 1 1 0 Ezrin/radixin/moesin family YabA PF06156.13 gi|282164453|ref|YP_003356838.1| - 0.88 10.2 3.4 2.3 8.9 3.4 1.7 1 0 0 1 1 1 0 Initiation control protein YabA CREPT PF16566.5 gi|282164453|ref|YP_003356838.1| - 1.4 9.1 5.7 0.42 10.8 2.3 1.8 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour DUF5446 PF17522.2 gi|282164453|ref|YP_003356838.1| - 6.3 7.0 7.9 1.8 8.8 3.9 2.1 2 1 0 2 2 2 0 Family of unknown function (DUF5446) PadR PF03551.14 gi|282164455|ref|YP_003356840.1| - 1e-23 83.1 0.0 1.4e-23 82.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|282164455|ref|YP_003356840.1| - 0.00013 22.6 0.1 0.00017 22.2 0.1 1.2 1 0 0 1 1 1 1 Replication terminator protein ArsR PF09824.9 gi|282164455|ref|YP_003356840.1| - 0.0046 16.6 0.9 0.077 12.6 0.0 2.2 1 1 1 2 2 2 1 ArsR transcriptional regulator HTH_34 PF13601.6 gi|282164455|ref|YP_003356840.1| - 0.0052 16.9 0.0 0.018 15.2 0.0 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|282164455|ref|YP_003356840.1| - 0.02 14.7 0.0 0.03 14.2 0.0 1.5 1 1 0 1 1 1 0 HxlR-like helix-turn-helix DUF505 PF04458.12 gi|282164455|ref|YP_003356840.1| - 0.023 13.1 0.0 0.023 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF2513 PF10711.9 gi|282164455|ref|YP_003356840.1| - 0.025 14.9 0.0 0.031 14.6 0.0 1.3 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) RDD PF06271.12 gi|282164456|ref|YP_003356841.1| - 1.8e-21 76.8 6.8 2.3e-21 76.5 6.8 1.1 1 0 0 1 1 1 1 RDD family ABC_tran PF00005.27 gi|282164459|ref|YP_003356844.1| - 4.7e-35 121.1 0.0 7.4e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|282164459|ref|YP_003356844.1| - 7.2e-10 38.7 3.5 4.6e-08 32.8 3.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|282164459|ref|YP_003356844.1| - 2.4e-09 37.4 1.3 8e-05 22.6 0.3 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|282164459|ref|YP_003356844.1| - 3.7e-07 30.9 0.0 5.5e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|282164459|ref|YP_003356844.1| - 5.2e-07 29.3 0.0 1e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|282164459|ref|YP_003356844.1| - 0.00021 21.2 0.2 0.00034 20.5 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|282164459|ref|YP_003356844.1| - 0.00049 20.5 0.0 0.0014 19.0 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|282164459|ref|YP_003356844.1| - 0.0013 19.1 0.0 0.0027 18.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|282164459|ref|YP_003356844.1| - 0.0034 17.2 0.1 0.054 13.3 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|282164459|ref|YP_003356844.1| - 0.0041 16.9 0.0 0.0076 16.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|282164459|ref|YP_003356844.1| - 0.0072 16.3 0.0 0.049 13.6 0.0 2.1 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_27 PF13514.6 gi|282164459|ref|YP_003356844.1| - 0.0086 15.7 0.0 0.019 14.5 0.0 1.5 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|282164459|ref|YP_003356844.1| - 0.016 15.2 0.1 0.027 14.4 0.1 1.8 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|282164459|ref|YP_003356844.1| - 0.041 13.9 0.0 0.12 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|282164459|ref|YP_003356844.1| - 0.045 13.7 0.0 0.095 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|282164459|ref|YP_003356844.1| - 0.047 13.6 0.1 0.094 12.6 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase RNA_helicase PF00910.22 gi|282164459|ref|YP_003356844.1| - 0.047 14.1 0.0 0.16 12.4 0.0 1.9 2 0 0 2 2 2 0 RNA helicase AAA_33 PF13671.6 gi|282164459|ref|YP_003356844.1| - 0.048 13.8 0.1 0.21 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|282164459|ref|YP_003356844.1| - 0.051 13.8 0.2 0.18 12.1 0.2 2.0 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|282164459|ref|YP_003356844.1| - 0.052 12.7 0.3 0.11 11.7 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain Mg_chelatase PF01078.21 gi|282164459|ref|YP_003356844.1| - 0.06 12.7 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|282164459|ref|YP_003356844.1| - 0.069 13.1 0.3 0.24 11.3 0.1 1.9 2 0 0 2 2 2 0 NTPase Cytidylate_kin PF02224.18 gi|282164459|ref|YP_003356844.1| - 0.084 12.6 0.4 0.25 11.0 0.2 1.8 1 1 1 2 2 2 0 Cytidylate kinase ABC_ATPase PF09818.9 gi|282164459|ref|YP_003356844.1| - 0.084 11.6 1.4 5.1 5.8 0.0 3.3 2 1 1 3 3 3 0 Predicted ATPase of the ABC class Rad17 PF03215.15 gi|282164459|ref|YP_003356844.1| - 0.088 12.7 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_19 PF13245.6 gi|282164459|ref|YP_003356844.1| - 0.13 12.6 0.3 0.23 11.8 0.3 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|282164459|ref|YP_003356844.1| - 0.14 12.2 1.1 0.58 10.3 1.1 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase FecCD PF01032.18 gi|282164460|ref|YP_003356845.1| - 3.5e-87 292.3 45.5 3.8e-87 292.2 43.6 1.7 1 1 1 2 2 2 1 FecCD transport family ABC-3 PF00950.17 gi|282164460|ref|YP_003356845.1| - 6e-07 29.2 27.4 6e-07 29.2 27.4 2.3 1 1 2 3 3 3 1 ABC 3 transport family Peripla_BP_2 PF01497.18 gi|282164461|ref|YP_003356846.1| - 3e-32 112.1 1.2 3.9e-32 111.7 1.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF169 PF02596.15 gi|282164462|ref|YP_003356847.1| - 3.1e-35 122.0 0.0 3.5e-35 121.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 AAA_5 PF07728.14 gi|282164463|ref|YP_003356848.1| - 4.8e-25 88.2 0.0 2.6e-24 85.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|282164463|ref|YP_003356848.1| - 1.3e-15 57.0 2.4 3.8e-15 55.5 2.4 1.8 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 gi|282164463|ref|YP_003356848.1| - 2.3e-05 24.8 0.0 6e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|282164463|ref|YP_003356848.1| - 0.00011 22.0 0.0 0.00024 21.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF5582 PF17819.1 gi|282164463|ref|YP_003356848.1| - 0.00052 20.5 0.4 0.001 19.6 0.4 1.4 1 0 0 1 1 1 1 Family of unknown function (DUF5582) T4_baseplate PF12322.8 gi|282164463|ref|YP_003356848.1| - 0.018 14.5 0.1 0.03 13.8 0.1 1.4 1 0 0 1 1 1 0 T4 bacteriophage base plate protein RNase_T PF00929.24 gi|282164463|ref|YP_003356848.1| - 0.093 13.3 0.1 0.22 12.1 0.1 1.6 1 0 0 1 1 1 0 Exonuclease DUF5500 PF17604.2 gi|282164463|ref|YP_003356848.1| - 0.16 12.1 1.1 0.42 10.7 0.1 2.3 3 0 0 3 3 3 0 Family of unknown function (DUF5500) VWA_2 PF13519.6 gi|282164464|ref|YP_003356849.1| - 2.9e-12 47.2 0.1 9.5e-12 45.5 0.1 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 gi|282164464|ref|YP_003356849.1| - 1.6e-09 38.3 0.6 3.7e-09 37.1 0.6 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|282164464|ref|YP_003356849.1| - 1.6e-06 27.7 0.0 2.8e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 gi|282164464|ref|YP_003356849.1| - 2.3e-06 27.7 0.0 5.8e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF3692 PF12469.8 gi|282164464|ref|YP_003356849.1| - 0.06 13.6 0.0 0.19 12.0 0.0 1.8 1 0 0 1 1 1 0 CRISPR-associated protein DUF2115 PF09888.9 gi|282164465|ref|YP_003356850.1| - 1.5e-53 181.7 0.0 1.9e-53 181.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) DUF1453 PF07301.11 gi|282164466|ref|YP_003356851.1| - 8.9e-11 42.0 15.8 1.1e-10 41.7 15.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1453) Cadherin_C_2 PF16492.5 gi|282164466|ref|YP_003356851.1| - 1 10.2 6.2 11 6.8 2.2 2.2 2 0 0 2 2 2 0 Cadherin cytoplasmic C-terminal AIRS_C PF02769.22 gi|282164467|ref|YP_003356852.1| - 3.6e-51 173.4 1.9 1.2e-24 87.2 0.2 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|282164467|ref|YP_003356852.1| - 1.3e-18 67.3 0.0 4.5e-18 65.5 0.0 2.0 2 0 0 2 2 2 1 Formylglycinamide ribonucleotide amidotransferase linker domain AIRS PF00586.24 gi|282164467|ref|YP_003356852.1| - 4.8e-17 62.4 0.0 5e-11 43.1 0.0 2.5 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain PurS PF02700.14 gi|282164467|ref|YP_003356852.1| - 2.8e-07 30.6 0.1 0.0012 19.0 0.0 3.7 3 1 0 3 3 3 2 Phosphoribosylformylglycinamidine (FGAM) synthase Cofac_haem_bdg PF04187.13 gi|282164467|ref|YP_003356852.1| - 0.057 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Haem-binding uptake, Tiki superfamily, ChaN Propep_M14 PF02244.16 gi|282164467|ref|YP_003356852.1| - 0.19 12.1 0.0 4.7 7.7 0.0 2.8 3 0 0 3 3 3 0 Carboxypeptidase activation peptide GATase_5 PF13507.6 gi|282164468|ref|YP_003356853.1| - 5.8e-82 274.7 0.0 6.5e-82 274.5 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|282164468|ref|YP_003356853.1| - 0.00089 18.9 0.1 0.0047 16.6 0.1 2.0 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|282164468|ref|YP_003356853.1| - 0.0031 17.3 0.0 0.039 13.7 0.0 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family YbjQ_1 PF01906.17 gi|282164469|ref|YP_003356854.1| - 9.8e-38 129.0 0.1 1.1e-37 128.8 0.1 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.6 gi|282164469|ref|YP_003356854.1| - 0.0034 17.7 0.2 0.008 16.5 0.1 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4156) E1-E2_ATPase PF00122.20 gi|282164471|ref|YP_003356856.1| - 1.4e-44 151.8 0.8 1.4e-44 151.8 0.8 3.0 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|282164471|ref|YP_003356856.1| - 9.9e-27 93.8 7.3 9.9e-27 93.8 7.3 2.1 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|282164471|ref|YP_003356856.1| - 2e-23 83.8 0.0 7e-23 82.0 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|282164471|ref|YP_003356856.1| - 1.8e-10 40.3 0.0 9.8e-10 38.0 0.0 2.2 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|282164471|ref|YP_003356856.1| - 0.0002 21.2 0.1 0.0021 17.8 0.2 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|282164471|ref|YP_003356856.1| - 0.00036 21.0 0.1 0.0013 19.2 0.0 1.9 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase PhoR PF11808.8 gi|282164471|ref|YP_003356856.1| - 0.019 15.4 0.0 0.019 15.4 0.0 3.7 4 0 0 4 4 4 0 Phosphate regulon sensor protein PhoR Cation_ATPase PF13246.6 gi|282164471|ref|YP_003356856.1| - 0.026 14.6 0.0 0.055 13.6 0.0 1.5 1 0 0 1 1 1 0 Cation transport ATPase (P-type) Usp PF00582.26 gi|282164472|ref|YP_003356857.1| - 8.1e-32 110.7 0.3 1.2e-31 110.1 0.3 1.3 1 1 0 1 1 1 1 Universal stress protein family Cation_efflux PF01545.21 gi|282164473|ref|YP_003356858.1| - 1.8e-47 161.7 15.9 2.2e-47 161.4 15.9 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|282164473|ref|YP_003356858.1| - 4.7e-25 87.5 3.9 8e-25 86.8 3.9 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter YwiC PF14256.6 gi|282164473|ref|YP_003356858.1| - 0.053 13.8 1.2 0.12 12.7 1.2 1.6 1 0 0 1 1 1 0 YwiC-like protein DUF5353 PF17304.2 gi|282164473|ref|YP_003356858.1| - 1.1 9.1 4.8 0.21 11.4 0.6 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5353) SLATT_1 PF18181.1 gi|282164473|ref|YP_003356858.1| - 2.2 8.2 4.4 3.7 7.5 0.5 2.8 2 1 1 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 1 Nramp PF01566.18 gi|282164474|ref|YP_003356859.1| - 4.9e-99 331.7 30.9 4.9e-99 331.7 30.9 1.3 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein MgtE_N PF03448.17 gi|282164475|ref|YP_003356860.1| - 5e-25 88.1 8.8 1.2e-24 86.9 5.6 2.4 2 0 0 2 2 2 1 MgtE intracellular N domain CBS PF00571.28 gi|282164475|ref|YP_003356860.1| - 2.6e-19 69.4 8.0 4.3e-09 36.7 0.5 4.2 5 0 0 5 5 5 2 CBS domain FliG_M PF14841.6 gi|282164475|ref|YP_003356860.1| - 3.6e-08 33.5 1.9 0.0019 18.4 0.0 4.3 3 1 1 4 4 4 2 FliG middle domain PRC PF05239.16 gi|282164475|ref|YP_003356860.1| - 0.00053 20.0 6.6 0.0032 17.5 0.7 3.4 3 0 0 3 3 3 1 PRC-barrel domain FliG_C PF01706.16 gi|282164475|ref|YP_003356860.1| - 0.022 14.9 1.3 0.022 14.9 1.3 2.3 2 1 0 2 2 2 0 FliG C-terminal domain T4_baseplate PF12322.8 gi|282164475|ref|YP_003356860.1| - 0.17 11.3 0.8 0.59 9.6 0.3 2.1 2 0 0 2 2 2 0 T4 bacteriophage base plate protein FliG_N PF14842.6 gi|282164475|ref|YP_003356860.1| - 0.21 12.2 5.2 1.3 9.6 1.6 3.7 3 1 0 3 3 3 0 FliG N-terminal domain SWIM PF04434.17 gi|282164476|ref|YP_003356861.1| - 6.2e-05 22.6 0.4 0.00012 21.7 0.4 1.4 1 0 0 1 1 1 1 SWIM zinc finger DUF2769 PF10967.8 gi|282164477|ref|YP_003356862.1| - 1.2e-15 57.9 10.7 1.4e-15 57.7 10.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) Radical_SAM PF04055.21 gi|282164478|ref|YP_003356863.1| - 1.2e-15 58.2 0.3 2.7e-15 57.1 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|282164478|ref|YP_003356863.1| - 9.4e-10 38.9 0.0 1.7e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|282164478|ref|YP_003356863.1| - 5.2e-06 26.6 0.0 1.3e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1450 PF07293.11 gi|282164478|ref|YP_003356863.1| - 0.079 12.8 0.1 2.6 7.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1450) PAS_4 PF08448.10 gi|282164479|ref|YP_003356864.1| - 8.3e-48 161.2 0.3 3.9e-19 68.9 0.0 5.3 5 0 0 5 5 5 5 PAS fold PAS_3 PF08447.12 gi|282164479|ref|YP_003356864.1| - 3.4e-43 145.8 1.9 3.4e-14 52.9 0.0 5.6 5 0 0 5 5 5 5 PAS fold PAS PF00989.25 gi|282164479|ref|YP_003356864.1| - 1.2e-40 138.0 0.0 6.4e-11 42.3 0.0 5.3 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.7 gi|282164479|ref|YP_003356864.1| - 2.8e-39 133.5 0.2 4.4e-10 39.7 0.0 5.4 5 0 0 5 5 5 5 PAS domain HATPase_c PF02518.26 gi|282164479|ref|YP_003356864.1| - 1.7e-14 54.2 0.0 3.9e-14 53.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|282164479|ref|YP_003356864.1| - 4.6e-12 45.7 0.0 0.0016 18.4 0.0 4.6 5 0 0 5 5 5 3 PAS domain HATPase_c_2 PF13581.6 gi|282164479|ref|YP_003356864.1| - 0.00011 22.2 0.0 0.00031 20.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|282164479|ref|YP_003356864.1| - 0.00043 20.4 0.5 0.78 9.9 0.0 4.9 5 1 0 5 5 5 1 PAS fold PAS_6 PF08348.11 gi|282164479|ref|YP_003356864.1| - 0.0023 17.8 0.0 21 5.0 0.0 4.0 4 0 0 4 4 4 0 YheO-like PAS domain HATPase_c_5 PF14501.6 gi|282164479|ref|YP_003356864.1| - 0.088 12.7 0.0 0.25 11.3 0.0 1.8 1 0 0 1 1 1 0 GHKL domain DUF2284 PF10050.9 gi|282164480|ref|YP_003356865.1| - 4.5e-51 172.8 0.0 5.6e-51 172.5 0.0 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) KGG PF10685.9 gi|282164481|ref|YP_003356866.1| - 6.7e-08 32.6 2.2 0.004 17.4 0.0 2.3 2 0 0 2 2 2 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282164481|ref|YP_003356866.1| - 5.1e-05 23.7 2.5 5.6e-05 23.6 2.5 1.1 1 0 0 1 1 1 1 Small hydrophilic plant seed protein SASP PF00269.20 gi|282164481|ref|YP_003356866.1| - 0.00029 20.8 1.7 0.058 13.4 0.5 2.0 2 0 0 2 2 2 2 Small, acid-soluble spore proteins, alpha/beta type MFS_1 PF07690.16 gi|282164482|ref|YP_003356867.1| - 5e-43 147.4 59.4 1.4e-38 132.8 47.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|282164482|ref|YP_003356867.1| - 1.4e-12 47.2 30.4 1.7e-07 30.4 17.5 2.3 1 1 1 2 2 2 2 MFS_1 like family MFS_2 PF13347.6 gi|282164482|ref|YP_003356867.1| - 3.8e-10 38.9 36.0 2.4e-06 26.4 8.9 2.3 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.13 gi|282164482|ref|YP_003356867.1| - 6e-08 31.5 20.8 3.5e-07 29.0 20.8 1.8 1 1 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.24 gi|282164482|ref|YP_003356867.1| - 3.2e-06 26.3 27.2 0.0037 16.2 10.5 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter LacY_symp PF01306.19 gi|282164482|ref|YP_003356867.1| - 0.0067 15.3 28.1 0.012 14.4 10.8 2.4 2 1 0 2 2 2 2 LacY proton/sugar symporter Iron_permease PF04120.12 gi|282164482|ref|YP_003356867.1| - 0.12 12.1 0.6 1.2 8.9 0.0 2.6 2 0 0 2 2 2 0 Low affinity iron permease Lig_chan PF00060.26 gi|282164482|ref|YP_003356867.1| - 1.6 8.6 0.0 1.6 8.6 0.0 3.1 3 1 0 3 3 3 0 Ligand-gated ion channel Rhodanese PF00581.20 gi|282164483|ref|YP_003356868.1| - 2.8e-16 60.0 0.0 4.1e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain PHB_acc_N PF07879.11 gi|282164483|ref|YP_003356868.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 PHB/PHA accumulation regulator DNA-binding domain DNA_ligase_ZBD PF03119.16 gi|282164483|ref|YP_003356868.1| - 0.16 12.0 0.1 0.22 11.5 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF2769 PF10967.8 gi|282164484|ref|YP_003356869.1| - 6.7e-13 49.1 10.9 8.4e-13 48.8 10.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) zf-Paramyx-P PF13008.7 gi|282164484|ref|YP_003356869.1| - 0.47 9.9 10.6 0.67 9.5 1.6 2.4 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein Radical_SAM PF04055.21 gi|282164485|ref|YP_003356870.1| - 6.6e-14 52.6 0.0 9.7e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|282164485|ref|YP_003356870.1| - 0.48 10.1 4.5 11 5.6 4.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) Nre_N PF04894.12 gi|282164486|ref|YP_003356871.1| - 5.8e-97 324.7 0.0 7.4e-97 324.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|282164486|ref|YP_003356871.1| - 1.3e-38 131.2 0.0 2.4e-38 130.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Prenyltransf PF01255.19 gi|282164487|ref|YP_003356872.1| - 3.4e-68 229.5 0.0 4.3e-68 229.2 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Rap1a PF18602.1 gi|282164487|ref|YP_003356872.1| - 0.00028 21.1 0.0 0.19 12.1 0.0 2.6 2 0 0 2 2 2 2 Rap1a immunity proteins DUF2551 PF10826.8 gi|282164488|ref|YP_003356873.1| - 9.6e-28 96.3 0.1 1.1e-27 96.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) PKI PF02827.16 gi|282164488|ref|YP_003356873.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 1 0 1 1 1 0 cAMP-dependent protein kinase inhibitor Radical_SAM PF04055.21 gi|282164489|ref|YP_003356874.1| - 6e-09 36.5 0.1 2e-07 31.5 0.0 2.6 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|282164489|ref|YP_003356874.1| - 5.5e-06 26.5 0.0 1.1e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|282164489|ref|YP_003356874.1| - 0.00083 19.6 0.0 0.0015 18.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PNP_UDP_1 PF01048.20 gi|282164491|ref|YP_003356876.1| - 7.1e-43 146.5 0.0 8.4e-43 146.3 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily NAD_binding_10 PF13460.6 gi|282164491|ref|YP_003356876.1| - 0.0041 17.0 0.0 0.0068 16.3 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding DUF3853 PF12964.7 gi|282164491|ref|YP_003356876.1| - 0.083 13.1 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3853) Pribosyltran PF00156.27 gi|282164492|ref|YP_003356877.1| - 1.1e-21 77.0 0.0 1.4e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|282164492|ref|YP_003356877.1| - 0.19 11.2 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase SBP_bac_5 PF00496.22 gi|282164493|ref|YP_003356878.1| - 5.7e-77 259.2 0.1 9.4e-77 258.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle CarboxypepD_reg PF13620.6 gi|282164494|ref|YP_003356879.1| - 1.6e-07 31.4 8.1 5.9e-07 29.7 7.9 1.9 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|282164494|ref|YP_003356879.1| - 3.7e-07 30.0 0.3 6.5e-07 29.3 0.3 1.4 1 0 0 1 1 1 1 CarboxypepD_reg-like domain SdrD_B PF17210.3 gi|282164494|ref|YP_003356879.1| - 0.00097 19.3 2.9 0.0015 18.7 2.9 1.4 1 1 0 1 1 1 1 SdrD B-like domain HCV_core PF01542.18 gi|282164494|ref|YP_003356879.1| - 0.0068 16.8 0.1 0.013 15.8 0.1 1.6 1 0 0 1 1 1 1 Hepatitis C virus core protein MetallophosN PF16371.5 gi|282164494|ref|YP_003356879.1| - 0.013 15.8 0.5 0.025 14.8 0.5 1.5 1 0 0 1 1 1 0 N terminal of Calcineurin-like phosphoesterase DUF4366 PF14283.6 gi|282164494|ref|YP_003356879.1| - 0.044 13.8 0.0 0.061 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Mucin PF01456.17 gi|282164494|ref|YP_003356879.1| - 0.057 13.4 18.0 0.11 12.5 18.0 1.6 1 1 0 1 1 1 0 Mucin-like glycoprotein Alpha_GJ PF03229.13 gi|282164494|ref|YP_003356879.1| - 0.17 12.4 11.5 0.13 12.8 10.2 1.5 1 1 0 1 1 1 0 Alphavirus glycoprotein J Med13_C PF06333.12 gi|282164494|ref|YP_003356879.1| - 0.45 9.7 6.8 0.55 9.5 6.8 1.1 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal domain Calx-beta PF03160.14 gi|282164495|ref|YP_003356880.1| - 2.7e-31 107.7 4.5 1e-15 57.7 0.3 2.8 3 0 0 3 3 3 2 Calx-beta domain CarbopepD_reg_2 PF13715.6 gi|282164495|ref|YP_003356880.1| - 2.4e-06 27.4 0.9 2.4e-06 27.4 0.9 2.6 3 0 0 3 3 3 1 CarboxypepD_reg-like domain CarboxypepD_reg PF13620.6 gi|282164495|ref|YP_003356880.1| - 3.2e-06 27.3 15.2 1.5e-05 25.2 4.0 3.9 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain DUF1491 PF07372.12 gi|282164495|ref|YP_003356880.1| - 0.0047 17.3 0.1 0.011 16.1 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1491) DUF4843 PF16132.5 gi|282164495|ref|YP_003356880.1| - 0.046 13.3 0.0 0.3 10.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4843) Peptidase_M56 PF05569.11 gi|282164495|ref|YP_003356880.1| - 0.32 10.1 1.7 2.8 7.1 0.0 2.3 2 0 0 2 2 2 0 BlaR1 peptidase M56 SdrD_B PF17210.3 gi|282164495|ref|YP_003356880.1| - 0.6 10.4 5.9 0.16 12.2 1.6 2.2 3 0 0 3 3 3 0 SdrD B-like domain MetallophosN PF16371.5 gi|282164495|ref|YP_003356880.1| - 1.5 9.1 4.9 0.91 9.8 1.1 2.5 3 0 0 3 3 3 0 N terminal of Calcineurin-like phosphoesterase DUF4492 PF14899.6 gi|282164495|ref|YP_003356880.1| - 9.8 6.2 7.3 0.8 9.7 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4492) DUF211 PF02680.14 gi|282164496|ref|YP_003356881.1| - 8.2e-39 131.7 3.7 9.1e-39 131.5 3.7 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 VIT1 PF01988.19 gi|282164497|ref|YP_003356882.1| - 6.2e-19 68.7 18.0 1e-12 48.4 5.4 2.0 1 1 1 2 2 2 2 VIT family DUF2207 PF09972.9 gi|282164497|ref|YP_003356882.1| - 7.6 5.2 7.7 28 3.3 7.0 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Transposase_mut PF00872.18 gi|282164498|ref|YP_003356883.1| - 7.7e-106 354.2 0.3 9e-106 353.9 0.3 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|282164498|ref|YP_003356883.1| - 2.2e-12 47.2 0.0 4.2e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS240 PF13610.6 gi|282164498|ref|YP_003356883.1| - 1.4e-07 31.8 0.3 0.00042 20.6 0.2 2.7 1 1 1 2 2 2 2 DDE domain DDE_Tnp_IS66 PF03050.14 gi|282164498|ref|YP_003356883.1| - 4.9e-06 26.2 0.1 8.5e-06 25.4 0.1 1.4 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_ISL3 PF01610.17 gi|282164498|ref|YP_003356883.1| - 0.06 13.1 0.1 0.1 12.3 0.1 1.4 1 0 0 1 1 1 0 Transposase Gly-zipper_OmpA PF13436.6 gi|282164499|ref|YP_003356884.1| - 0.062 13.1 1.3 0.062 13.1 1.3 4.3 6 0 0 6 6 6 0 Glycine-zipper domain ABC_export PF16962.5 gi|282164499|ref|YP_003356884.1| - 1.3 7.4 21.5 0.21 10.0 17.7 1.5 1 1 0 1 1 1 0 Putative ABC exporter Prominin PF05478.11 gi|282164499|ref|YP_003356884.1| - 1.9 6.3 8.4 2.8 5.8 8.4 1.1 1 0 0 1 1 1 0 Prominin Tim17 PF02466.19 gi|282164499|ref|YP_003356884.1| - 3 8.3 20.3 0.75 10.2 2.6 4.1 2 1 1 3 3 3 0 Tim17/Tim22/Tim23/Pmp24 family Rep_fac_C PF08542.11 gi|282164500|ref|YP_003356885.1| - 1.3e-20 73.6 0.0 4.3e-20 71.9 0.0 1.9 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|282164500|ref|YP_003356885.1| - 7.6e-18 65.2 0.0 2.2e-17 63.7 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|282164500|ref|YP_003356885.1| - 5.6e-15 55.5 0.0 6e-09 35.9 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|282164500|ref|YP_003356885.1| - 1.2e-09 38.1 0.0 1.1e-08 35.0 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|282164500|ref|YP_003356885.1| - 1.9e-07 31.6 0.1 0.00014 22.3 0.0 2.4 1 1 1 2 2 2 2 AAA ATPase domain Rad17 PF03215.15 gi|282164500|ref|YP_003356885.1| - 3.4e-06 27.1 0.0 6.4e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_assoc_2 PF16193.5 gi|282164500|ref|YP_003356885.1| - 1.4e-05 25.3 0.3 9.4e-05 22.7 0.1 2.3 2 0 0 2 2 2 1 AAA C-terminal domain AAA_3 PF07726.11 gi|282164500|ref|YP_003356885.1| - 1.8e-05 24.6 0.0 3.6e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|282164500|ref|YP_003356885.1| - 3.5e-05 23.3 0.0 0.0084 15.5 0.0 2.4 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|282164500|ref|YP_003356885.1| - 6.4e-05 23.0 0.0 0.00028 20.9 0.0 1.9 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.13 gi|282164500|ref|YP_003356885.1| - 0.00024 20.5 0.0 0.0012 18.2 0.0 1.9 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_18 PF13238.6 gi|282164500|ref|YP_003356885.1| - 0.00033 21.2 0.0 0.0071 16.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|282164500|ref|YP_003356885.1| - 0.00065 19.8 0.0 0.0014 18.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain ResIII PF04851.15 gi|282164500|ref|YP_003356885.1| - 0.0012 18.9 0.0 0.0058 16.7 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|282164500|ref|YP_003356885.1| - 0.0015 18.3 0.0 0.0034 17.1 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_2 PF07724.14 gi|282164500|ref|YP_003356885.1| - 0.0017 18.5 0.0 0.019 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|282164500|ref|YP_003356885.1| - 0.0048 16.9 0.0 0.037 14.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|282164500|ref|YP_003356885.1| - 0.0051 17.1 0.1 1.7 8.9 0.0 2.6 3 0 0 3 3 3 1 AAA domain Sigma54_activat PF00158.26 gi|282164500|ref|YP_003356885.1| - 0.0061 16.3 0.0 1.8 8.3 0.0 2.5 3 0 0 3 3 3 1 Sigma-54 interaction domain DNA_pol3_delta PF06144.13 gi|282164500|ref|YP_003356885.1| - 0.02 14.6 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit AAA_7 PF12775.7 gi|282164500|ref|YP_003356885.1| - 0.022 14.3 0.0 0.056 13.0 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|282164500|ref|YP_003356885.1| - 0.028 14.8 0.0 0.07 13.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase PhoH PF02562.16 gi|282164500|ref|YP_003356885.1| - 0.047 13.1 0.1 1.3 8.4 0.0 2.6 3 0 0 3 3 3 0 PhoH-like protein SNF2_N PF00176.23 gi|282164500|ref|YP_003356885.1| - 0.087 11.5 0.0 0.18 10.5 0.0 1.5 1 1 0 1 1 1 0 SNF2 family N-terminal domain DUF3400 PF11880.8 gi|282164500|ref|YP_003356885.1| - 0.087 12.4 0.1 0.94 9.1 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3400) AAA_24 PF13479.6 gi|282164500|ref|YP_003356885.1| - 0.099 12.3 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|282164500|ref|YP_003356885.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2240 PF09999.9 gi|282164501|ref|YP_003356886.1| - 1.3e-40 138.3 0.1 1.5e-40 138.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Transglut_core PF01841.19 gi|282164502|ref|YP_003356887.1| - 1e-20 74.2 0.0 1.9e-20 73.4 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily CarboxypepD_reg PF13620.6 gi|282164502|ref|YP_003356887.1| - 1.6e-08 34.7 1.2 1.6e-08 34.7 1.2 2.1 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|282164502|ref|YP_003356887.1| - 2.4e-08 33.9 0.9 5.2e-08 32.8 0.9 1.6 1 0 0 1 1 1 1 CarboxypepD_reg-like domain PEGA PF08308.11 gi|282164502|ref|YP_003356887.1| - 0.0087 15.9 0.0 0.027 14.3 0.0 1.8 1 0 0 1 1 1 1 PEGA domain Transglut_core3 PF13471.6 gi|282164502|ref|YP_003356887.1| - 0.0099 15.8 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF3869 PF12985.7 gi|282164502|ref|YP_003356887.1| - 0.038 14.4 1.6 0.13 12.6 1.6 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF3869) Rad4 PF03835.15 gi|282164502|ref|YP_003356887.1| - 0.14 11.9 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Rad4 transglutaminase-like domain DUF4770 PF15994.5 gi|282164502|ref|YP_003356887.1| - 0.23 11.7 0.0 0.38 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4770) Band_7 PF01145.25 gi|282164505|ref|YP_003356890.1| - 4.1e-31 108.3 1.5 6e-31 107.8 0.8 1.6 2 0 0 2 2 2 1 SPFH domain / Band 7 family DUF3969 PF13108.6 gi|282164505|ref|YP_003356890.1| - 0.11 12.6 0.2 1.6 8.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3969) NfeD PF01957.18 gi|282164506|ref|YP_003356891.1| - 4.7e-17 62.1 0.6 4.7e-17 62.1 0.6 1.8 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CopD PF05425.13 gi|282164506|ref|YP_003356891.1| - 1.6 9.1 9.8 5.5 7.4 9.8 1.8 1 1 0 1 1 1 0 Copper resistance protein D DUF1418 PF07214.12 gi|282164506|ref|YP_003356891.1| - 8.5 6.3 10.7 26 4.8 10.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1418) FxsA PF04186.13 gi|282164506|ref|YP_003356891.1| - 8.5 6.6 15.6 0.49 10.5 8.6 2.2 1 1 1 2 2 2 0 FxsA cytoplasmic membrane protein Cas_Cas4 PF01930.17 gi|282164507|ref|YP_003356892.1| - 4.6e-07 30.1 0.0 0.00012 22.2 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function DUF83 Nitro_FeMo-Co PF02579.17 gi|282164509|ref|YP_003356894.1| - 8.8e-18 64.4 0.1 1e-17 64.2 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Radical_SAM PF04055.21 gi|282164510|ref|YP_003356895.1| - 1e-16 61.7 0.3 2.3e-16 60.6 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|282164510|ref|YP_003356895.1| - 1.7e-07 31.6 0.1 4e-07 30.4 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|282164510|ref|YP_003356895.1| - 1.4e-05 25.3 0.0 3.2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|282164510|ref|YP_003356895.1| - 0.024 14.8 0.0 0.052 13.7 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain Peptidase_M9_N PF08453.10 gi|282164510|ref|YP_003356895.1| - 0.2 11.3 0.0 0.41 10.3 0.0 1.5 1 0 0 1 1 1 0 Peptidase family M9 N-terminal Aminotran_1_2 PF00155.21 gi|282164511|ref|YP_003356896.1| - 1.1e-60 205.7 0.0 1.3e-60 205.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|282164511|ref|YP_003356896.1| - 3.6e-10 39.7 0.0 5.2e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|282164511|ref|YP_003356896.1| - 1.6e-08 33.6 0.0 2.2e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|282164511|ref|YP_003356896.1| - 0.00032 19.8 0.0 0.00058 18.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Acetyltransf_1 PF00583.25 gi|282164512|ref|YP_003356897.1| - 3.7e-10 40.1 0.0 4.8e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|282164512|ref|YP_003356897.1| - 6.2e-09 35.9 0.0 7.7e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|282164512|ref|YP_003356897.1| - 1.6e-08 34.9 0.0 2.7e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|282164512|ref|YP_003356897.1| - 1.1e-06 28.9 0.1 1.7e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|282164512|ref|YP_003356897.1| - 6.8e-05 22.9 0.0 0.0001 22.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|282164512|ref|YP_003356897.1| - 0.15 12.2 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Nitroreductase PF00881.24 gi|282164513|ref|YP_003356898.1| - 1.9e-34 119.1 2.4 2e-18 67.0 0.2 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|282164513|ref|YP_003356898.1| - 8.3e-21 74.5 0.1 1.1e-07 31.6 0.0 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase Sugar_tr PF00083.24 gi|282164515|ref|YP_003356900.1| - 0.085 11.7 0.3 0.094 11.6 0.3 1.0 1 0 0 1 1 1 0 Sugar (and other) transporter ABC2_membrane_2 PF12679.7 gi|282164516|ref|YP_003356901.1| - 8.8e-15 54.7 25.2 1.8e-14 53.7 25.1 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|282164516|ref|YP_003356901.1| - 1.8e-09 37.2 26.7 1.8e-09 37.2 26.7 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|282164516|ref|YP_003356901.1| - 1.2e-07 31.8 13.2 1.2e-07 31.8 13.2 2.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|282164517|ref|YP_003356902.1| - 4.6e-35 121.1 0.0 6.5e-35 120.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282164517|ref|YP_003356902.1| - 9.7e-13 48.6 0.0 4.2e-08 33.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|282164517|ref|YP_003356902.1| - 0.0002 20.2 0.0 0.31 9.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|282164517|ref|YP_003356902.1| - 0.0007 19.4 0.0 0.66 9.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|282164517|ref|YP_003356902.1| - 0.0088 16.5 0.3 0.091 13.2 0.3 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|282164517|ref|YP_003356902.1| - 0.0089 16.5 0.1 0.013 16.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|282164517|ref|YP_003356902.1| - 0.02 14.5 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|282164517|ref|YP_003356902.1| - 0.064 13.0 0.0 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|282164517|ref|YP_003356902.1| - 0.13 12.0 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain TraB PF01963.17 gi|282164518|ref|YP_003356903.1| - 0.00058 19.8 0.0 0.022 14.7 0.0 2.1 2 0 0 2 2 2 2 TraB family Ribosomal_S8e PF01201.22 gi|282164519|ref|YP_003356904.1| - 1.1e-28 100.1 5.7 1.2e-28 99.9 5.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e AhpC-TSA PF00578.21 gi|282164520|ref|YP_003356905.1| - 1.5e-26 92.8 0.0 1.7e-26 92.6 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|282164520|ref|YP_003356905.1| - 5e-17 62.0 0.0 5.8e-17 61.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|282164520|ref|YP_003356905.1| - 0.088 12.9 0.0 0.53 10.4 0.0 1.8 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme AhpC-TSA PF00578.21 gi|282164521|ref|YP_003356906.1| - 2.4e-17 63.0 0.0 3e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|282164521|ref|YP_003356906.1| - 1.8e-10 40.7 0.0 2.2e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin DUF531 PF04407.12 gi|282164522|ref|YP_003356907.1| - 6.7e-77 257.4 0.0 7.6e-77 257.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.6 gi|282164522|ref|YP_003356907.1| - 3.3e-05 23.3 0.0 4.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP Methyltrn_RNA_4 PF09936.9 gi|282164522|ref|YP_003356907.1| - 0.005 16.7 0.0 0.0073 16.2 0.0 1.2 1 0 0 1 1 1 1 SAM-dependent RNA methyltransferase tRNA-synt_2b PF00587.25 gi|282164523|ref|YP_003356908.1| - 9.6e-28 97.3 0.0 2.3e-27 96.1 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|282164523|ref|YP_003356908.1| - 4.6e-20 71.6 0.0 8e-20 70.8 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|282164523|ref|YP_003356908.1| - 1.5e-12 47.5 0.1 4e-12 46.2 0.1 1.8 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Peptidase_M29 PF02073.15 gi|282164524|ref|YP_003356909.1| - 8.3e-18 64.4 0.0 1.8e-17 63.2 0.0 1.5 2 0 0 2 2 2 1 Thermophilic metalloprotease (M29) DUF4443 PF14544.6 gi|282164524|ref|YP_003356909.1| - 0.072 13.3 0.0 0.29 11.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4443) Peptidase_M3 PF01432.20 gi|282164525|ref|YP_003356910.1| - 0.021 14.1 1.0 0.12 11.6 0.4 2.2 2 1 0 2 2 2 0 Peptidase family M3 PAS_3 PF08447.12 gi|282164526|ref|YP_003356911.1| - 7.4e-49 164.0 1.3 9.3e-14 51.5 0.0 5.1 6 0 0 6 6 5 4 PAS fold PAS_4 PF08448.10 gi|282164526|ref|YP_003356911.1| - 5e-44 149.1 0.8 6e-14 52.2 0.0 4.7 4 1 1 5 5 5 3 PAS fold PAS PF00989.25 gi|282164526|ref|YP_003356911.1| - 1.4e-40 137.8 0.1 3.7e-14 52.7 0.0 4.7 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|282164526|ref|YP_003356911.1| - 1.4e-37 128.1 0.0 1.6e-10 41.2 0.0 4.7 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.26 gi|282164526|ref|YP_003356911.1| - 1.8e-19 70.3 0.0 4.4e-19 69.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|282164526|ref|YP_003356911.1| - 6.2e-12 45.3 0.1 8.2e-05 22.5 0.0 4.4 4 0 0 4 4 4 2 PAS domain HATPase_c_2 PF13581.6 gi|282164526|ref|YP_003356911.1| - 0.0012 18.8 0.0 0.003 17.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|282164526|ref|YP_003356911.1| - 0.0013 18.6 0.0 0.0036 17.2 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_6 PF08348.11 gi|282164526|ref|YP_003356911.1| - 0.0054 16.6 0.0 0.47 10.3 0.0 2.7 2 0 0 2 2 2 1 YheO-like PAS domain HisKA PF00512.25 gi|282164526|ref|YP_003356911.1| - 0.35 10.9 2.2 2.5 8.2 0.1 3.0 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain OmpH PF03938.14 gi|282164526|ref|YP_003356911.1| - 7 7.0 7.7 0.61 10.4 0.3 2.9 4 0 0 4 4 4 0 Outer membrane protein (OmpH-like) DUF5354 PF17305.2 gi|282164527|ref|YP_003356912.1| - 0.086 13.1 0.0 0.086 13.1 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5354) PAS_3 PF08447.12 gi|282164528|ref|YP_003356913.1| - 7.1e-27 93.5 0.0 1.1e-10 41.6 0.0 4.0 3 1 1 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|282164528|ref|YP_003356913.1| - 3e-20 72.4 0.0 8.5e-09 35.6 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|282164528|ref|YP_003356913.1| - 5.5e-20 71.5 0.0 4.9e-09 36.2 0.0 3.3 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|282164528|ref|YP_003356913.1| - 2.2e-18 66.8 0.0 4.9e-18 65.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|282164528|ref|YP_003356913.1| - 2.1e-16 60.1 0.0 5.4e-05 23.4 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|282164528|ref|YP_003356913.1| - 1.4e-11 44.1 0.0 2.1e-06 27.6 0.0 3.3 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.6 gi|282164528|ref|YP_003356913.1| - 0.00025 20.9 0.0 0.00068 19.5 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|282164528|ref|YP_003356913.1| - 0.00034 20.6 0.0 0.00082 19.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.6 gi|282164528|ref|YP_003356913.1| - 0.053 13.6 0.0 7.3 6.8 0.0 2.7 2 0 0 2 2 2 0 PAS domain DUF1214 PF06742.11 gi|282164529|ref|YP_003356914.1| - 4.1e-36 123.8 0.2 6.3e-36 123.2 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1214) DUF3180 PF11377.8 gi|282164529|ref|YP_003356914.1| - 0.0051 17.0 2.5 0.0082 16.3 2.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3180) EpuA PF11772.8 gi|282164529|ref|YP_003356914.1| - 0.011 15.4 1.3 0.011 15.4 1.3 2.7 3 0 0 3 3 2 0 DNA-directed RNA polymerase subunit beta Yip1 PF04893.17 gi|282164529|ref|YP_003356914.1| - 0.018 14.8 2.7 0.018 14.8 2.7 2.0 1 1 0 2 2 2 0 Yip1 domain OAD_gamma PF04277.13 gi|282164529|ref|YP_003356914.1| - 0.058 14.0 1.2 0.097 13.3 0.9 1.5 1 1 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Fig1 PF12351.8 gi|282164529|ref|YP_003356914.1| - 0.13 12.2 1.7 0.18 11.7 1.7 1.2 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 CopD PF05425.13 gi|282164529|ref|YP_003356914.1| - 0.21 12.0 4.8 0.41 11.1 4.4 1.7 1 1 0 1 1 1 0 Copper resistance protein D EMP70 PF02990.16 gi|282164529|ref|YP_003356914.1| - 0.25 10.0 2.3 0.33 9.6 2.3 1.1 1 0 0 1 1 1 0 Endomembrane protein 70 DUF2407_C PF13373.6 gi|282164529|ref|YP_003356914.1| - 0.89 9.7 3.6 24 5.1 0.1 2.4 1 1 1 2 2 2 0 DUF2407 C-terminal domain Tetraspanin PF00335.20 gi|282164529|ref|YP_003356914.1| - 2.2 7.9 5.7 13 5.5 5.7 1.9 1 1 0 1 1 1 0 Tetraspanin family Romo1 PF10247.9 gi|282164529|ref|YP_003356914.1| - 6.2 7.3 12.4 14 6.1 0.3 2.8 2 1 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 DUF1254 PF06863.12 gi|282164530|ref|YP_003356915.1| - 1.6e-36 125.3 0.3 2.1e-36 124.9 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1254) ABC_tran PF00005.27 gi|282164531|ref|YP_003356916.1| - 7e-32 110.8 0.0 9e-32 110.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282164531|ref|YP_003356916.1| - 1.2e-05 25.3 3.0 3.5e-05 23.8 0.9 2.2 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282164531|ref|YP_003356916.1| - 6e-05 22.6 0.0 0.0017 17.8 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282164531|ref|YP_003356916.1| - 6.2e-05 22.7 0.2 0.00011 21.8 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|282164531|ref|YP_003356916.1| - 0.00017 21.4 0.3 0.0008 19.2 0.6 1.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|282164531|ref|YP_003356916.1| - 0.0007 20.1 0.7 0.0012 19.4 0.7 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|282164531|ref|YP_003356916.1| - 0.0033 17.7 0.0 0.021 15.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|282164531|ref|YP_003356916.1| - 0.01 15.7 0.2 0.018 15.0 0.2 1.3 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|282164531|ref|YP_003356916.1| - 0.017 15.2 0.0 0.028 14.5 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|282164531|ref|YP_003356916.1| - 0.018 14.8 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|282164531|ref|YP_003356916.1| - 0.034 13.3 0.0 0.047 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA PF00004.29 gi|282164531|ref|YP_003356916.1| - 0.058 13.8 0.0 0.67 10.4 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|282164531|ref|YP_003356916.1| - 0.07 11.9 0.1 0.18 10.6 0.4 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|282164531|ref|YP_003356916.1| - 0.11 12.9 0.1 0.21 12.0 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|282164531|ref|YP_003356916.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|282164531|ref|YP_003356916.1| - 0.11 12.0 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|282164531|ref|YP_003356916.1| - 0.12 11.6 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin DUF2813 PF11398.8 gi|282164531|ref|YP_003356916.1| - 0.19 11.0 0.0 0.26 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) BPD_transp_1 PF00528.22 gi|282164532|ref|YP_003356917.1| - 1.5e-15 57.4 13.4 1.5e-15 57.4 13.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PRTase_3 PF15610.6 gi|282164532|ref|YP_003356917.1| - 0.089 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 PRTase ComF-like SBP_bac_11 PF13531.6 gi|282164533|ref|YP_003356918.1| - 3.8e-32 111.9 0.0 4.3e-32 111.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|282164533|ref|YP_003356918.1| - 2.8e-05 24.2 2.2 0.0064 16.5 2.2 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.20 gi|282164533|ref|YP_003356918.1| - 0.0024 17.3 0.0 0.0028 17.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 OpuAC PF04069.12 gi|282164533|ref|YP_003356918.1| - 0.0034 17.0 0.1 0.0047 16.5 0.1 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system PBP_like PF12727.7 gi|282164533|ref|YP_003356918.1| - 0.0036 16.4 0.0 0.0071 15.5 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain Phosphonate-bd PF12974.7 gi|282164533|ref|YP_003356918.1| - 0.042 13.4 0.0 0.062 12.9 0.0 1.2 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein HxlR PF01638.17 gi|282164534|ref|YP_003356919.1| - 1.5e-22 79.2 0.0 2e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|282164534|ref|YP_003356919.1| - 0.003 17.5 0.0 0.0046 16.9 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF2680 PF10925.8 gi|282164535|ref|YP_003356920.1| - 0.057 13.4 2.3 0.069 13.2 1.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2680) DUF5320 PF17253.2 gi|282164535|ref|YP_003356920.1| - 0.091 13.8 0.0 0.094 13.8 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5320) DUF3287 PF11690.8 gi|282164535|ref|YP_003356920.1| - 0.11 12.3 1.1 0.13 12.0 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3287) Pdase_C33_assoc PF14756.6 gi|282164535|ref|YP_003356920.1| - 0.54 10.2 3.5 0.53 10.2 3.5 1.1 1 0 0 1 1 1 0 Peptidase_C33-associated domain ABC_tran PF00005.27 gi|282164536|ref|YP_003356921.1| - 4.1e-22 79.2 0.0 5.1e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.6 gi|282164536|ref|YP_003356921.1| - 0.0017 18.9 0.2 0.0024 18.4 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|282164536|ref|YP_003356921.1| - 0.019 14.7 0.1 0.027 14.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|282164536|ref|YP_003356921.1| - 0.04 13.6 0.1 0.059 13.0 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|282164536|ref|YP_003356921.1| - 0.047 13.4 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.6 gi|282164536|ref|YP_003356921.1| - 0.053 13.3 0.0 0.081 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|282164536|ref|YP_003356921.1| - 0.067 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|282164536|ref|YP_003356921.1| - 0.074 13.4 0.0 0.083 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|282164536|ref|YP_003356921.1| - 0.12 12.7 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|282164536|ref|YP_003356921.1| - 0.16 11.8 0.2 0.33 10.7 0.1 1.5 1 1 0 1 1 1 0 MukB N-terminal Rad17 PF03215.15 gi|282164536|ref|YP_003356921.1| - 0.21 11.5 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain DUF4162 PF13732.6 gi|282164537|ref|YP_003356922.1| - 9.8e-09 35.8 0.1 4.1e-07 30.6 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|282164537|ref|YP_003356922.1| - 0.00014 21.8 0.0 0.00029 20.8 0.0 1.5 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC2_membrane PF01061.24 gi|282164538|ref|YP_003356923.1| - 2.8e-22 79.2 20.6 2.8e-22 79.2 20.6 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|282164538|ref|YP_003356923.1| - 2.9e-12 46.4 27.2 2.9e-12 46.4 27.2 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|282164538|ref|YP_003356923.1| - 3.9e-05 23.1 20.6 0.00042 19.7 20.6 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|282164538|ref|YP_003356923.1| - 0.052 13.1 12.3 0.0068 15.9 8.3 1.5 2 0 0 2 2 2 0 CcmB protein Cupin_2 PF07883.11 gi|282164539|ref|YP_003356924.1| - 8.3e-10 38.3 0.0 9.5e-10 38.1 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|282164539|ref|YP_003356924.1| - 9.5e-06 25.6 0.0 1.1e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.6 gi|282164539|ref|YP_003356924.1| - 0.0077 15.9 0.0 0.009 15.7 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain KduI PF04962.12 gi|282164539|ref|YP_003356924.1| - 0.02 14.2 0.0 0.022 14.1 0.0 1.1 1 0 0 1 1 1 0 KduI/IolB family Ectoine_synth PF06339.12 gi|282164539|ref|YP_003356924.1| - 0.15 12.3 0.0 0.17 12.1 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase Pirin_C PF05726.13 gi|282164539|ref|YP_003356924.1| - 0.17 12.3 0.0 0.22 11.9 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Y_Y_Y PF07495.13 gi|282164540|ref|YP_003356925.1| - 0.0084 16.1 0.1 0.022 14.7 0.1 1.7 1 0 0 1 1 1 1 Y_Y_Y domain SpaA PF17802.1 gi|282164540|ref|YP_003356925.1| - 0.12 12.7 0.5 0.2 12.0 0.5 1.7 1 1 0 1 1 1 0 Prealbumin-like fold domain TBP PF00352.21 gi|282164541|ref|YP_003356926.1| - 4e-52 174.1 0.0 9.4e-27 92.8 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|282164541|ref|YP_003356926.1| - 7.4e-06 26.0 0.0 0.034 14.3 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) MttA_Hcf106 PF02416.16 gi|282164541|ref|YP_003356926.1| - 0.32 10.4 1.5 13 5.2 0.6 2.4 2 0 0 2 2 2 0 mttA/Hcf106 family PadR PF03551.14 gi|282164542|ref|YP_003356927.1| - 8.5e-21 73.7 0.1 1.2e-20 73.2 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|282164542|ref|YP_003356927.1| - 0.0002 21.4 0.0 0.00027 21.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|282164542|ref|YP_003356927.1| - 0.0021 17.8 0.1 0.0026 17.6 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF505 PF04458.12 gi|282164542|ref|YP_003356927.1| - 0.015 13.7 0.0 0.018 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) CnrY PF17524.2 gi|282164543|ref|YP_003356928.1| - 0.63 10.3 4.2 0.29 11.4 1.3 1.9 1 1 1 2 2 2 0 Anti-sigma factor CnrY DUF2207 PF09972.9 gi|282164543|ref|YP_003356928.1| - 3.7 6.2 10.0 0.15 10.8 0.4 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Ycf66_N PF07444.11 gi|282164544|ref|YP_003356929.1| - 1.6 8.9 8.9 0.9 9.7 6.0 1.9 2 0 0 2 2 2 0 Ycf66 protein N-terminus TatC PF00902.18 gi|282164544|ref|YP_003356929.1| - 4.3 7.1 14.1 0.58 9.9 8.1 2.0 1 1 1 2 2 2 0 Sec-independent protein translocase protein (TatC) TIR_2 PF13676.6 gi|282164545|ref|YP_003356930.1| - 1.8e-21 76.9 0.0 4.1e-21 75.8 0.0 1.6 2 0 0 2 2 2 1 TIR domain TIR PF01582.20 gi|282164545|ref|YP_003356930.1| - 2.3e-05 24.3 0.1 7.1e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 TIR domain TIR-like PF10137.9 gi|282164545|ref|YP_003356930.1| - 0.0042 17.0 0.4 0.026 14.5 0.0 2.3 3 0 0 3 3 3 1 Predicted nucleotide-binding protein containing TIR-like domain DUF1863 PF08937.11 gi|282164545|ref|YP_003356930.1| - 0.0076 16.6 0.8 1.2 9.4 0.0 2.6 3 0 0 3 3 3 2 MTH538 TIR-like domain (DUF1863) UL45 PF05473.12 gi|282164545|ref|YP_003356930.1| - 0.17 11.5 0.7 4.1 7.0 0.3 2.3 2 0 0 2 2 2 0 UL45 protein, carbohydrate-binding C-type lectin-like DUF5122 PF17164.4 gi|282164546|ref|YP_003356931.1| - 0.00048 20.3 7.5 1.2 9.5 0.1 5.5 5 0 0 5 5 5 2 Domain of unknown function (DUF5122) beta-propeller PQQ_2 PF13360.6 gi|282164546|ref|YP_003356931.1| - 0.00083 19.0 0.2 0.5 9.9 0.1 2.3 2 0 0 2 2 2 2 PQQ-like domain RHS PF03527.14 gi|282164546|ref|YP_003356931.1| - 0.029 14.1 4.1 3 7.7 0.0 3.8 4 0 0 4 4 4 0 RHS protein DUF4357 PF14267.6 gi|282164546|ref|YP_003356931.1| - 0.033 14.1 0.3 25 4.9 0.0 3.8 4 0 0 4 4 4 0 Domain of unknown function (DUF4357) DUF2064 PF09837.9 gi|282164546|ref|YP_003356931.1| - 0.15 11.9 3.6 19 5.1 0.1 3.6 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2064) PQQ_3 PF13570.6 gi|282164546|ref|YP_003356931.1| - 5.8 7.5 14.6 25 5.5 0.7 4.8 4 1 0 4 4 4 0 PQQ-like domain Metallophos_2 PF12850.7 gi|282164547|ref|YP_003356932.1| - 1.9e-29 103.0 0.0 2.3e-29 102.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|282164547|ref|YP_003356932.1| - 1.2e-09 39.0 3.1 8.4e-09 36.2 3.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|282164548|ref|YP_003356933.1| - 4.6e-25 88.7 0.0 7.3e-25 88.1 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|282164548|ref|YP_003356933.1| - 1e-15 58.8 0.2 1.4e-15 58.3 0.2 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.11 gi|282164548|ref|YP_003356933.1| - 0.00055 18.4 0.2 0.068 11.4 0.0 2.0 1 1 1 2 2 2 2 Firmicute fructose-1,6-bisphosphatase PhoU PF01895.19 gi|282164549|ref|YP_003356934.1| - 2.3e-35 120.9 3.4 1.6e-17 63.7 0.1 2.1 2 0 0 2 2 2 2 PhoU domain DUF325 PF03804.13 gi|282164549|ref|YP_003356934.1| - 0.074 13.1 0.5 1.5 8.9 0.0 2.9 3 0 0 3 3 3 0 Viral proteins of unknown function ABC_tran PF00005.27 gi|282164550|ref|YP_003356935.1| - 2e-32 112.6 0.0 3.1e-32 111.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282164550|ref|YP_003356935.1| - 4.3e-12 46.5 0.0 4.6e-05 23.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282164550|ref|YP_003356935.1| - 5.9e-09 35.7 0.0 0.00026 20.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|282164550|ref|YP_003356935.1| - 3.8e-06 26.9 0.0 1.4e-05 25.0 0.0 1.6 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|282164550|ref|YP_003356935.1| - 7.4e-05 23.3 0.3 0.00019 22.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|282164550|ref|YP_003356935.1| - 0.00045 19.9 0.0 0.00089 19.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|282164550|ref|YP_003356935.1| - 0.00047 20.6 0.0 0.0019 18.6 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|282164550|ref|YP_003356935.1| - 0.00048 20.4 0.2 0.0017 18.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|282164550|ref|YP_003356935.1| - 0.00069 19.6 0.0 0.0035 17.2 0.0 2.1 3 0 0 3 3 3 1 RsgA GTPase Rad17 PF03215.15 gi|282164550|ref|YP_003356935.1| - 0.0012 18.8 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain ATPase_2 PF01637.18 gi|282164550|ref|YP_003356935.1| - 0.0013 18.7 0.0 0.77 9.6 0.0 2.2 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|282164550|ref|YP_003356935.1| - 0.016 14.8 0.0 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|282164550|ref|YP_003356935.1| - 0.029 13.2 0.0 1.9 7.2 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|282164550|ref|YP_003356935.1| - 0.034 13.9 0.0 0.79 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|282164550|ref|YP_003356935.1| - 0.037 12.8 0.1 0.77 8.5 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_18 PF13238.6 gi|282164550|ref|YP_003356935.1| - 0.044 14.3 0.1 0.089 13.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|282164550|ref|YP_003356935.1| - 0.05 13.3 0.1 0.19 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|282164550|ref|YP_003356935.1| - 0.061 12.7 0.2 0.19 11.0 0.0 1.8 2 0 0 2 2 2 0 KaiC Gemin6 PF06372.12 gi|282164550|ref|YP_003356935.1| - 0.062 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Gemin6 protein PRK PF00485.18 gi|282164550|ref|YP_003356935.1| - 0.069 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|282164550|ref|YP_003356935.1| - 0.1 12.7 0.2 0.2 11.8 0.2 1.9 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|282164550|ref|YP_003356935.1| - 0.11 12.8 0.2 0.6 10.5 0.0 2.1 2 0 0 2 2 2 0 RNA helicase BPD_transp_1 PF00528.22 gi|282164551|ref|YP_003356936.1| - 3.9e-26 91.9 17.3 3.9e-26 91.9 17.3 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|282164552|ref|YP_003356937.1| - 1.5e-23 83.5 14.7 1.5e-23 83.5 14.7 2.3 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|282164553|ref|YP_003356938.1| - 4.6e-42 144.6 7.8 7.4e-42 143.9 7.8 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|282164553|ref|YP_003356938.1| - 1.8e-19 69.6 0.8 2.2e-19 69.4 0.8 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|282164553|ref|YP_003356938.1| - 1.9e-08 34.3 0.5 2.6e-08 33.9 0.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|282164553|ref|YP_003356938.1| - 0.031 13.7 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein PGP_phosphatase PF09419.10 gi|282164553|ref|YP_003356938.1| - 0.099 12.2 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial PGP phosphatase PhoU PF01895.19 gi|282164554|ref|YP_003356939.1| - 1.8e-25 89.2 13.5 9.3e-17 61.3 6.2 2.7 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|282164554|ref|YP_003356939.1| - 9.1e-08 31.9 0.0 2.1e-07 30.7 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF1062 PF06353.12 gi|282164554|ref|YP_003356939.1| - 0.17 12.7 3.1 5.5 7.8 0.8 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF1062) FtsJ PF01728.19 gi|282164555|ref|YP_003356940.1| - 6.4e-54 182.7 0.0 7.9e-54 182.4 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|282164555|ref|YP_003356940.1| - 5.5e-12 45.5 1.5 1.4e-11 44.2 1.5 1.6 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.6 gi|282164555|ref|YP_003356940.1| - 6.8e-05 22.8 0.0 0.00021 21.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282164555|ref|YP_003356940.1| - 0.035 14.8 0.1 2.3 9.0 0.1 2.5 1 1 1 2 2 2 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282164555|ref|YP_003356940.1| - 0.037 13.8 0.0 0.39 10.5 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain NNMT_PNMT_TEMT PF01234.17 gi|282164555|ref|YP_003356940.1| - 0.067 12.4 0.0 1.2 8.3 0.0 2.1 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family UPF0146 PF03686.13 gi|282164555|ref|YP_003356940.1| - 0.091 12.6 0.0 0.28 11.1 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0146) N_BRCA1_IG PF16158.5 gi|282164556|ref|YP_003356941.1| - 4.3e-07 30.6 0.3 1.8e-06 28.6 0.3 2.1 1 0 0 1 1 1 1 Ig-like domain from next to BRCA1 gene DUF4352 PF11611.8 gi|282164556|ref|YP_003356941.1| - 0.072 13.4 0.2 0.15 12.3 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4352) BsuPI PF12690.7 gi|282164556|ref|YP_003356941.1| - 0.093 12.8 0.0 14 5.8 0.0 2.9 2 0 0 2 2 2 0 Intracellular proteinase inhibitor KorB_C PF06613.11 gi|282164556|ref|YP_003356941.1| - 0.1 12.6 0.1 0.35 10.9 0.1 1.9 2 0 0 2 2 2 0 KorB C-terminal beta-barrel domain DUF5122 PF17164.4 gi|282164556|ref|YP_003356941.1| - 1.1 9.7 0.0 1.1 9.7 0.0 5.8 6 0 0 6 6 6 0 Domain of unknown function (DUF5122) beta-propeller DUF2064 PF09837.9 gi|282164556|ref|YP_003356941.1| - 5.7 6.8 6.3 20 5.0 0.1 3.9 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2064) SNARE_assoc PF09335.11 gi|282164557|ref|YP_003356942.1| - 5.6e-25 88.1 5.1 5.6e-25 88.1 5.1 1.6 2 0 0 2 2 2 1 SNARE associated Golgi protein MCH PF02289.16 gi|282164558|ref|YP_003356943.1| - 6.5e-104 347.6 0.1 7.2e-104 347.4 0.1 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) MazE_antitoxin PF04014.18 gi|282164559|ref|YP_003356944.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin PI3K_P85_iSH2 PF16454.5 gi|282164560|ref|YP_003356945.1| - 0.057 13.0 0.2 0.061 12.9 0.2 1.1 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain GTP_EFTU PF00009.27 gi|282164561|ref|YP_003356946.1| - 1.4e-31 109.5 0.0 2.3e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|282164561|ref|YP_003356946.1| - 1.7e-12 47.6 0.7 4.8e-12 46.1 0.7 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|282164561|ref|YP_003356946.1| - 6.6e-08 32.8 0.0 1.7e-07 31.6 0.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain MMR_HSR1 PF01926.23 gi|282164561|ref|YP_003356946.1| - 0.0027 17.8 0.1 0.027 14.5 0.0 2.6 2 1 0 2 2 2 1 50S ribosome-binding GTPase AlbA_2 PF04326.14 gi|282164561|ref|YP_003356946.1| - 0.0033 17.8 0.1 0.0079 16.5 0.1 1.7 1 0 0 1 1 1 1 Putative DNA-binding domain RsgA_GTPase PF03193.16 gi|282164561|ref|YP_003356946.1| - 0.0053 16.7 0.1 0.88 9.5 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase ATP_bind_1 PF03029.17 gi|282164561|ref|YP_003356946.1| - 0.032 14.0 0.1 0.42 10.4 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF2012 PF09430.10 gi|282164562|ref|YP_003356947.1| - 0.096 12.8 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) DUF4352 PF11611.8 gi|282164564|ref|YP_003356949.1| - 0.00074 19.8 0.0 0.0011 19.2 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4352) FAP PF07174.11 gi|282164565|ref|YP_003356950.1| - 0.3 10.5 11.4 0.33 10.4 11.4 1.0 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) NUDIX PF00293.28 gi|282164566|ref|YP_003356951.1| - 6.8e-19 68.2 0.0 7.9e-19 68.0 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|282164566|ref|YP_003356951.1| - 8.8e-06 25.7 0.0 1.5e-05 25.0 0.0 1.5 1 1 0 1 1 1 1 NUDIX domain MC1 PF05854.11 gi|282164567|ref|YP_003356952.1| - 3e-30 104.4 0.6 4.7e-30 103.7 0.6 1.3 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Dehalogenase PF13486.6 gi|282164567|ref|YP_003356952.1| - 0.0097 15.3 0.2 0.01 15.3 0.2 1.0 1 0 0 1 1 1 1 Reductive dehalogenase subunit GTP_EFTU_D4 PF14578.6 gi|282164567|ref|YP_003356952.1| - 0.02 14.8 0.1 0.037 13.9 0.1 1.4 1 0 0 1 1 1 0 Elongation factor Tu domain 4 Methyltransf_25 PF13649.6 gi|282164568|ref|YP_003356953.1| - 5.5e-05 23.8 0.0 0.00012 22.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|282164568|ref|YP_003356953.1| - 0.00032 20.3 0.1 0.0011 18.6 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Glyco_hydro_67N PF03648.14 gi|282164568|ref|YP_003356953.1| - 0.0025 18.1 0.0 0.005 17.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 N-terminus Methyltransf_23 PF13489.6 gi|282164568|ref|YP_003356953.1| - 0.0046 16.8 0.0 0.008 16.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CCG PF02754.16 gi|282164568|ref|YP_003356953.1| - 0.0047 17.1 0.1 0.018 15.3 0.1 2.0 1 0 0 1 1 1 1 Cysteine-rich domain Methyltransf_11 PF08241.12 gi|282164568|ref|YP_003356953.1| - 0.016 15.8 0.0 0.044 14.4 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Metallophos PF00149.28 gi|282164569|ref|YP_003356954.1| - 7.1e-12 46.3 0.0 1.8e-11 45.0 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|282164569|ref|YP_003356954.1| - 2.9e-08 34.1 0.1 2.6e-07 31.0 0.1 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF2204 PF09970.9 gi|282164570|ref|YP_003356955.1| - 7.5e-27 94.1 0.0 8.7e-27 93.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_5 PF14907.6 gi|282164570|ref|YP_003356955.1| - 6.6e-10 39.0 0.0 8.3e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase AbiEii PF08843.11 gi|282164570|ref|YP_003356955.1| - 0.078 12.9 0.0 0.9 9.4 0.0 2.1 2 0 0 2 2 2 0 Nucleotidyl transferase AbiEii toxin, Type IV TA system E1-E2_ATPase PF00122.20 gi|282164571|ref|YP_003356956.1| - 1.3e-55 187.7 1.0 1.3e-55 187.7 1.0 2.5 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|282164571|ref|YP_003356956.1| - 3.5e-51 173.5 8.9 3.5e-51 173.5 8.9 1.5 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|282164571|ref|YP_003356956.1| - 1.5e-22 81.0 1.1 1.2e-19 71.4 0.2 3.2 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|282164571|ref|YP_003356956.1| - 5.6e-19 68.0 0.0 1e-18 67.2 0.0 1.4 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|282164571|ref|YP_003356956.1| - 0.00012 21.9 0.4 0.0038 17.0 0.6 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|282164571|ref|YP_003356956.1| - 0.00012 22.5 0.0 0.00024 21.6 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Peripla_BP_4 PF13407.6 gi|282164571|ref|YP_003356956.1| - 0.24 10.9 2.4 8.6 5.8 0.4 2.2 1 1 0 2 2 2 0 Periplasmic binding protein domain Usp PF00582.26 gi|282164572|ref|YP_003356957.1| - 6.4e-36 123.9 0.9 7.2e-36 123.8 0.9 1.0 1 0 0 1 1 1 1 Universal stress protein family AA_kinase PF00696.28 gi|282164573|ref|YP_003356958.1| - 3.8e-45 154.4 2.6 4.4e-45 154.2 2.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family Pyr_redox_2 PF07992.14 gi|282164574|ref|YP_003356959.1| - 1.7e-32 112.9 1.7 2.1e-32 112.6 1.7 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|282164574|ref|YP_003356959.1| - 2.9e-23 82.6 3.5 1.7e-19 70.2 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|282164574|ref|YP_003356959.1| - 1.5e-07 30.8 6.7 0.00082 18.6 0.2 3.2 3 1 1 4 4 4 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|282164574|ref|YP_003356959.1| - 5.1e-07 29.1 3.8 0.00087 18.5 0.1 3.0 3 0 0 3 3 3 2 FAD binding domain Thi4 PF01946.17 gi|282164574|ref|YP_003356959.1| - 5.3e-05 22.6 0.6 0.00031 20.1 0.1 2.2 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|282164574|ref|YP_003356959.1| - 8.2e-05 21.5 0.1 0.002 16.9 0.1 2.3 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|282164574|ref|YP_003356959.1| - 0.00013 22.5 2.5 0.0054 17.3 0.1 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|282164574|ref|YP_003356959.1| - 0.00063 19.1 0.0 0.0014 17.9 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|282164574|ref|YP_003356959.1| - 0.0051 17.0 0.4 0.016 15.4 0.4 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|282164574|ref|YP_003356959.1| - 0.0068 15.8 1.2 0.013 14.8 1.2 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase IlvN PF07991.12 gi|282164574|ref|YP_003356959.1| - 0.0085 15.7 0.2 0.052 13.1 0.1 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|282164574|ref|YP_003356959.1| - 0.013 14.9 0.1 0.13 11.6 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|282164574|ref|YP_003356959.1| - 0.07 12.7 4.8 0.062 12.9 1.6 2.3 2 1 1 3 3 3 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|282164574|ref|YP_003356959.1| - 0.24 10.4 0.9 0.48 9.4 0.8 1.5 1 1 1 2 2 2 0 Lycopene cyclase protein SSF PF00474.17 gi|282164575|ref|YP_003356960.1| - 2.4e-54 184.8 44.9 3.4e-54 184.3 44.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Lactate_perm PF02652.14 gi|282164576|ref|YP_003356961.1| - 4.3e-53 180.8 45.0 3.2e-51 174.6 45.0 2.0 1 1 0 1 1 1 1 L-lactate permease UbiD PF01977.16 gi|282164577|ref|YP_003356962.1| - 6.6e-107 357.9 0.9 7.4e-107 357.7 0.9 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PetG PF02529.15 gi|282164577|ref|YP_003356962.1| - 0.24 11.3 0.2 0.47 10.4 0.2 1.5 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 PAS_9 PF13426.7 gi|282164578|ref|YP_003356963.1| - 6.4e-20 71.3 0.1 1.1e-11 44.9 0.0 2.8 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|282164578|ref|YP_003356963.1| - 2.6e-17 63.3 0.1 5.9e-17 62.2 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|282164578|ref|YP_003356963.1| - 2.5e-16 59.9 0.1 1e-08 35.4 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|282164578|ref|YP_003356963.1| - 6.5e-11 42.2 0.0 2.2e-09 37.3 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|282164578|ref|YP_003356963.1| - 1.7e-10 40.6 0.0 0.00028 20.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|282164578|ref|YP_003356963.1| - 2.5e-05 24.5 0.0 6.5e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|282164578|ref|YP_003356963.1| - 3.5e-05 23.8 0.0 0.00039 20.4 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_10 PF13596.6 gi|282164578|ref|YP_003356963.1| - 0.013 16.1 0.2 0.074 13.6 0.1 2.4 2 1 0 2 2 2 0 PAS domain ThiF PF00899.21 gi|282164579|ref|YP_003356964.1| - 7.4e-66 222.0 0.0 8.8e-66 221.7 0.0 1.0 1 0 0 1 1 1 1 ThiF family UDPG_MGDP_dh_N PF03721.14 gi|282164579|ref|YP_003356964.1| - 0.016 14.8 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|282164579|ref|YP_003356964.1| - 0.1 12.2 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|282164579|ref|YP_003356964.1| - 0.12 12.6 0.0 0.27 11.5 0.0 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|282164579|ref|YP_003356964.1| - 0.24 11.3 0.0 0.32 10.8 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ion_trans PF00520.31 gi|282164580|ref|YP_003356965.1| - 1.3 8.2 10.4 0.36 10.0 1.1 2.0 1 1 1 2 2 2 0 Ion transport protein MRAP PF15183.6 gi|282164580|ref|YP_003356965.1| - 2.7 8.0 6.1 0.27 11.2 1.5 1.6 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family Flavoprotein PF02441.19 gi|282164582|ref|YP_003356967.1| - 6e-26 91.1 0.0 7.5e-26 90.8 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein CBAH PF02275.18 gi|282164582|ref|YP_003356967.1| - 0.0091 15.7 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family PAC4 PF16093.5 gi|282164583|ref|YP_003356968.1| - 0.027 14.6 0.0 0.042 14.0 0.0 1.3 1 0 0 1 1 1 0 Proteasome assembly chaperone 4 DUF1878 PF08963.10 gi|282164583|ref|YP_003356968.1| - 0.22 12.1 0.3 0.4 11.2 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1878) HD PF01966.22 gi|282164584|ref|YP_003356969.1| - 8.9e-16 58.2 1.8 3.9e-15 56.1 0.5 2.5 2 1 0 2 2 2 1 HD domain HDOD PF08668.12 gi|282164584|ref|YP_003356969.1| - 0.0065 16.0 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 HDOD domain UPF0052 PF01933.18 gi|282164585|ref|YP_003356970.1| - 8.2e-43 146.7 0.0 1.1e-42 146.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Fer4 PF00037.27 gi|282164586|ref|YP_003356971.1| - 8.9e-09 34.8 19.8 2.4e-07 30.3 5.3 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282164586|ref|YP_003356971.1| - 5.2e-07 29.7 4.1 1.3e-06 28.4 4.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282164586|ref|YP_003356971.1| - 3.2e-06 27.2 7.0 8.6e-06 25.8 7.0 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282164586|ref|YP_003356971.1| - 3.5e-06 26.9 4.1 3.5e-06 26.9 4.1 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282164586|ref|YP_003356971.1| - 6.9e-06 26.6 8.3 0.00031 21.3 1.3 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282164586|ref|YP_003356971.1| - 1.3e-05 25.3 7.4 3.2e-05 24.0 7.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282164586|ref|YP_003356971.1| - 1.4e-05 25.9 7.2 0.0076 17.2 1.7 2.8 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|282164586|ref|YP_003356971.1| - 0.00029 21.3 2.5 0.018 15.6 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282164586|ref|YP_003356971.1| - 0.0057 17.4 0.7 0.0057 17.4 0.7 2.8 2 1 1 3 3 2 1 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|282164586|ref|YP_003356971.1| - 0.0074 16.3 2.2 0.0074 16.3 2.2 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282164586|ref|YP_003356971.1| - 0.011 16.2 2.7 0.12 12.8 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|282164586|ref|YP_003356971.1| - 0.13 13.1 5.6 0.27 12.1 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|282164586|ref|YP_003356971.1| - 0.36 11.0 5.4 0.66 10.1 0.3 2.5 2 0 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Fer4_4 PF12800.7 gi|282164586|ref|YP_003356971.1| - 0.4 11.3 13.2 0.11 13.1 3.5 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain RNA_POL_M_15KD PF02150.16 gi|282164587|ref|YP_003356972.1| - 0.017 15.0 0.8 0.032 14.1 0.8 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit RPA_interact_C PF14768.6 gi|282164587|ref|YP_003356972.1| - 0.065 13.8 0.5 0.072 13.7 0.5 1.3 1 1 0 1 1 1 0 Replication protein A interacting C-terminal NTS PF15447.6 gi|282164587|ref|YP_003356972.1| - 0.074 13.6 1.5 0.16 12.5 1.5 1.7 1 1 0 1 1 1 0 N-terminal segments of PfEMP1 Ribosomal_S27e PF01667.17 gi|282164587|ref|YP_003356972.1| - 0.079 12.7 1.2 0.14 11.9 1.2 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 IBR PF01485.21 gi|282164587|ref|YP_003356972.1| - 0.083 13.1 1.1 0.17 12.1 1.1 1.5 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zinc_ribbon_9 PF14369.6 gi|282164587|ref|YP_003356972.1| - 0.23 11.8 3.3 0.23 11.7 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon Zn_Tnp_IS1595 PF12760.7 gi|282164587|ref|YP_003356972.1| - 0.93 9.5 4.9 4.8 7.2 5.4 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Acetyltransf_10 PF13673.7 gi|282164588|ref|YP_003356973.1| - 3.3e-06 27.1 0.1 6.4e-06 26.1 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|282164588|ref|YP_003356973.1| - 9.2e-06 25.9 0.0 1.8e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|282164588|ref|YP_003356973.1| - 0.00056 20.0 0.2 0.0017 18.4 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|282164588|ref|YP_003356973.1| - 0.0031 17.2 0.0 0.006 16.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ FR47 PF08445.10 gi|282164588|ref|YP_003356973.1| - 0.027 14.4 0.0 0.058 13.4 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein LAM_C PF12544.8 gi|282164589|ref|YP_003356974.1| - 6.1e-43 146.0 0.0 1.2e-42 145.0 0.0 1.5 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Radical_SAM PF04055.21 gi|282164589|ref|YP_003356974.1| - 1.4e-11 45.0 3.4 1.5e-11 44.9 0.1 2.5 2 2 1 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|282164589|ref|YP_003356974.1| - 0.00039 20.5 0.0 0.011 15.9 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|282164589|ref|YP_003356974.1| - 0.0023 18.2 0.0 0.014 15.6 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain AsnC_trans_reg PF01037.21 gi|282164590|ref|YP_003356975.1| - 6.1e-11 42.1 0.2 7e-11 41.9 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|282164590|ref|YP_003356975.1| - 0.012 15.6 0.3 0.014 15.4 0.3 1.1 1 0 0 1 1 1 0 NapD protein GYD PF08734.11 gi|282164590|ref|YP_003356975.1| - 0.015 15.3 0.1 0.016 15.2 0.1 1.2 1 0 0 1 1 1 0 GYD domain DWNN PF08783.11 gi|282164591|ref|YP_003356976.1| - 0.11 12.8 0.1 0.11 12.8 0.1 1.8 2 0 0 2 2 2 0 DWNN domain rve PF00665.26 gi|282164593|ref|YP_003356978.1| - 6.4e-30 103.8 0.0 1.1e-29 103.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|282164593|ref|YP_003356978.1| - 3.2e-18 65.3 0.1 5.5e-18 64.5 0.1 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 gi|282164593|ref|YP_003356978.1| - 6.4e-14 51.8 2.4 6.4e-14 51.8 2.4 1.8 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.6 gi|282164593|ref|YP_003356978.1| - 8.2e-07 29.1 2.6 8.2e-07 29.1 2.6 1.8 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 gi|282164593|ref|YP_003356978.1| - 8.9e-06 26.0 0.2 1.3e-05 25.4 0.2 1.3 1 0 0 1 1 1 1 DDE domain HTH_29 PF13551.6 gi|282164593|ref|YP_003356978.1| - 0.014 15.4 0.5 0.058 13.4 0.0 2.2 3 0 0 3 3 3 0 Winged helix-turn helix HTH_28 PF13518.6 gi|282164593|ref|YP_003356978.1| - 0.06 13.5 0.7 0.24 11.5 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|282164593|ref|YP_003356978.1| - 0.091 12.9 0.1 0.46 10.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_Tnp_1 PF01527.20 gi|282164594|ref|YP_003356979.1| - 1.8e-13 50.6 1.9 2.3e-13 50.2 1.9 1.2 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 gi|282164594|ref|YP_003356979.1| - 4e-06 26.9 0.0 7.5e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|282164594|ref|YP_003356979.1| - 6e-05 22.4 0.1 0.00023 20.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|282164594|ref|YP_003356979.1| - 0.0033 17.2 0.0 0.0086 15.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|282164594|ref|YP_003356979.1| - 0.0045 17.0 0.1 0.0045 17.0 0.1 1.5 2 0 0 2 2 2 1 Winged helix-turn helix Frankia_peptide PF14407.6 gi|282164594|ref|YP_003356979.1| - 0.0068 16.4 0.2 0.065 13.2 0.1 2.1 2 0 0 2 2 2 1 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. NRBF2 PF08961.10 gi|282164594|ref|YP_003356979.1| - 0.013 15.1 1.5 0.014 15.0 1.5 1.1 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator CENP-B_N PF04218.13 gi|282164594|ref|YP_003356979.1| - 0.037 13.7 0.1 0.081 12.6 0.0 1.6 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain DUF433 PF04255.14 gi|282164594|ref|YP_003356979.1| - 0.16 11.8 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Radical_SAM PF04055.21 gi|282164595|ref|YP_003356980.1| - 1.9e-13 51.1 7.1 5.3e-12 46.4 5.2 2.9 2 1 0 2 2 2 1 Radical SAM superfamily Pilin_N PF07790.11 gi|282164596|ref|YP_003356981.1| - 1.1e-09 39.0 1.4 1.7e-09 38.4 1.4 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Glycos_transf_2 PF00535.26 gi|282164597|ref|YP_003356982.1| - 2.9e-19 69.5 0.0 4.6e-19 68.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282164597|ref|YP_003356982.1| - 7e-07 29.4 0.0 9.7e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|282164597|ref|YP_003356982.1| - 0.0061 17.1 0.0 0.01 16.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|282164597|ref|YP_003356982.1| - 0.024 14.1 0.0 0.041 13.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 PUB PF09409.10 gi|282164597|ref|YP_003356982.1| - 0.12 12.3 0.6 0.48 10.4 0.1 2.0 2 0 0 2 2 2 0 PUB domain PGM_PMM_II PF02879.16 gi|282164597|ref|YP_003356982.1| - 0.14 12.8 0.0 0.26 12.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DUF5572 PF17733.1 gi|282164597|ref|YP_003356982.1| - 0.16 11.8 0.0 0.42 10.5 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5572) Promethin PF16015.5 gi|282164597|ref|YP_003356982.1| - 1.1 9.3 10.2 1.7 8.6 10.2 1.2 1 0 0 1 1 1 0 Promethin VirB3 PF05101.13 gi|282164597|ref|YP_003356982.1| - 1.8 8.9 5.0 3.3 8.0 5.0 1.4 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein Glycos_transf_2 PF00535.26 gi|282164598|ref|YP_003356983.1| - 1.2e-26 93.6 0.0 1.9e-26 92.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282164598|ref|YP_003356983.1| - 3.2e-22 79.5 0.0 4.3e-22 79.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|282164598|ref|YP_003356983.1| - 7e-13 48.9 0.1 9.5e-13 48.5 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|282164598|ref|YP_003356983.1| - 3.4e-10 39.9 0.0 4.7e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|282164598|ref|YP_003356983.1| - 7.6e-07 28.8 0.0 1.2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.14 gi|282164598|ref|YP_003356983.1| - 0.0006 19.4 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.6 gi|282164598|ref|YP_003356983.1| - 0.0069 16.9 0.0 0.023 15.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|282164599|ref|YP_003356984.1| - 1.3e-18 67.1 0.1 2.6e-18 66.2 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282164599|ref|YP_003356984.1| - 9.4e-15 55.2 0.0 1.5e-14 54.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|282164599|ref|YP_003356984.1| - 3.3e-08 33.8 0.0 6.3e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|282164600|ref|YP_003356985.1| - 1.4e-19 70.5 0.2 2.4e-19 69.8 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282164600|ref|YP_003356985.1| - 1.2e-18 67.9 0.0 1.6e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|282164600|ref|YP_003356985.1| - 0.0041 17.1 0.6 0.021 14.7 0.6 2.1 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|282164600|ref|YP_003356985.1| - 0.0067 15.9 0.0 0.02 14.4 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|282164600|ref|YP_003356985.1| - 0.0074 16.8 0.0 0.037 14.6 0.0 2.0 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 gi|282164601|ref|YP_003356986.1| - 2.6e-35 121.7 0.5 3.9e-35 121.1 0.5 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282164601|ref|YP_003356986.1| - 2.2e-17 63.7 0.0 1.8e-16 60.7 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|282164601|ref|YP_003356986.1| - 1.4e-14 54.2 1.1 2.1e-14 53.7 1.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|282164601|ref|YP_003356986.1| - 0.00012 22.1 0.9 0.00032 20.7 0.9 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|282164601|ref|YP_003356986.1| - 0.0059 17.1 1.1 0.015 15.8 0.1 2.2 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 gi|282164602|ref|YP_003356987.1| - 1.3e-34 119.5 0.3 2e-34 118.8 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282164602|ref|YP_003356987.1| - 2.1e-18 67.0 0.0 1.3e-17 64.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|282164602|ref|YP_003356987.1| - 2.5e-16 60.0 3.0 7e-16 58.5 2.9 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|282164602|ref|YP_003356987.1| - 6.7e-06 26.5 0.1 1.9e-05 25.1 0.1 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 GNT-I PF03071.15 gi|282164602|ref|YP_003356987.1| - 3.5e-05 22.8 0.1 5.4e-05 22.1 0.1 1.3 1 0 0 1 1 1 1 GNT-I family Glyco_trans_2_3 PF13632.6 gi|282164602|ref|YP_003356987.1| - 0.053 13.4 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family group 2 Glyco_trans_1_2 PF13524.6 gi|282164603|ref|YP_003356988.1| - 6.7e-35 119.4 0.0 1.5e-34 118.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3880 PF12996.7 gi|282164603|ref|YP_003356988.1| - 0.003 17.6 1.1 0.0087 16.1 1.1 1.8 1 0 0 1 1 1 1 DUF based on E. rectale Gene description (DUF3880) Acetyltransf_10 PF13673.7 gi|282164603|ref|YP_003356988.1| - 0.14 12.1 0.2 0.42 10.6 0.1 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DuoxA PF10204.9 gi|282164603|ref|YP_003356988.1| - 0.35 9.8 2.6 0.6 9.1 2.6 1.3 1 0 0 1 1 1 0 Dual oxidase maturation factor DUF268 PF03269.14 gi|282164604|ref|YP_003356989.1| - 5e-15 55.8 0.1 9.5e-15 54.9 0.1 1.4 1 0 0 1 1 1 1 Caenorhabditis protein of unknown function, DUF268 Methyltransf_11 PF08241.12 gi|282164604|ref|YP_003356989.1| - 0.032 14.9 0.0 0.056 14.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain ABC_tran PF00005.27 gi|282164605|ref|YP_003356990.1| - 1.7e-22 80.4 0.0 5.6e-22 78.7 0.0 1.9 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282164605|ref|YP_003356990.1| - 1.2e-07 31.8 4.4 0.00012 22.1 0.4 2.7 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|282164605|ref|YP_003356990.1| - 3.5e-05 23.7 0.0 5.6e-05 23.0 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain Wzt_C PF14524.6 gi|282164605|ref|YP_003356990.1| - 4.3e-05 23.6 0.0 8.3e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Wzt C-terminal domain AAA_23 PF13476.6 gi|282164605|ref|YP_003356990.1| - 0.002 18.7 0.1 0.0069 16.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|282164605|ref|YP_003356990.1| - 0.0021 17.8 0.0 0.0051 16.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|282164605|ref|YP_003356990.1| - 0.029 13.8 0.0 0.81 9.1 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Mei4 PF13971.6 gi|282164605|ref|YP_003356990.1| - 0.035 13.6 0.3 0.049 13.1 0.3 1.2 1 0 0 1 1 1 0 Meiosis-specific protein Mei4 DUF2813 PF11398.8 gi|282164605|ref|YP_003356990.1| - 0.042 13.1 0.1 5.1 6.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) RsgA_GTPase PF03193.16 gi|282164605|ref|YP_003356990.1| - 0.08 12.8 0.0 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|282164605|ref|YP_003356990.1| - 0.086 13.3 0.0 0.24 11.8 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|282164605|ref|YP_003356990.1| - 0.099 12.7 0.1 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|282164605|ref|YP_003356990.1| - 0.14 12.4 0.1 0.57 10.4 0.1 2.0 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|282164605|ref|YP_003356990.1| - 0.2 11.3 0.1 0.32 10.6 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.6 gi|282164605|ref|YP_003356990.1| - 0.23 11.2 0.1 0.94 9.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|282164606|ref|YP_003356991.1| - 3.6e-27 95.2 37.4 7.9e-27 94.0 30.2 2.0 1 1 1 2 2 2 2 ABC-2 type transporter PMT_2 PF13231.6 gi|282164608|ref|YP_003356993.1| - 6.4e-11 42.7 18.5 6.4e-11 42.7 18.5 4.1 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF4131 PF13567.6 gi|282164608|ref|YP_003356993.1| - 0.059 13.0 0.5 0.059 13.0 0.5 5.5 5 1 1 6 6 6 0 Domain of unknown function (DUF4131) Pilin_N PF07790.11 gi|282164609|ref|YP_003356994.1| - 2.7e-15 57.1 9.4 2.7e-15 57.1 9.4 1.7 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal Na_H_antiport_2 PF13726.6 gi|282164609|ref|YP_003356994.1| - 0.16 12.2 8.9 0.066 13.4 4.5 2.1 2 0 0 2 2 2 0 Na+-H+ antiporter family FUSC-like PF12805.7 gi|282164609|ref|YP_003356994.1| - 0.68 9.0 4.1 0.81 8.7 4.1 1.2 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS H_PPase PF03030.16 gi|282164610|ref|YP_003356995.1| - 1.1e-268 893.3 49.6 1.2e-268 893.1 49.6 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Ndc1_Nup PF09531.10 gi|282164610|ref|YP_003356995.1| - 1.2 7.8 2.8 2.7 6.6 2.8 1.5 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Vma12 PF11712.8 gi|282164610|ref|YP_003356995.1| - 3 7.9 6.3 0.82 9.7 0.1 2.7 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase PDDEXK_3 PF13366.6 gi|282164611|ref|YP_003356996.1| - 1.3e-40 138.4 1.2 1.5e-40 138.2 1.2 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily GHMP_kinases_C PF08544.13 gi|282164612|ref|YP_003356997.1| - 1.9e-09 37.8 0.0 3.4e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|282164612|ref|YP_003356997.1| - 0.00012 22.2 0.0 0.00025 21.2 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain Radical_SAM PF04055.21 gi|282164613|ref|YP_003356998.1| - 1.5e-21 77.5 0.1 2.2e-21 77.0 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|282164613|ref|YP_003356998.1| - 0.064 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain FTR1 PF03239.14 gi|282164614|ref|YP_003356999.1| - 0.0017 17.6 0.6 0.0031 16.7 0.6 1.5 1 0 0 1 1 1 1 Iron permease FTR1 family Peptidase_M50 PF02163.22 gi|282164614|ref|YP_003356999.1| - 0.9 8.8 5.9 8.9 5.5 0.1 2.9 1 1 1 2 2 2 0 Peptidase family M50 DUF423 PF04241.15 gi|282164614|ref|YP_003356999.1| - 4.2 7.6 8.8 4.4 7.6 0.6 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF423) PhosphMutase PF10143.9 gi|282164615|ref|YP_003357000.1| - 1.3e-55 187.8 0.0 1.9e-55 187.3 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|282164615|ref|YP_003357000.1| - 9.5e-40 136.5 0.0 1.1e-39 136.3 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily DUF4410 PF14366.6 gi|282164615|ref|YP_003357000.1| - 0.032 14.1 0.1 0.12 12.3 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4410) Pheromone PF08015.11 gi|282164615|ref|YP_003357000.1| - 0.05 14.6 0.0 0.12 13.5 0.0 1.5 1 0 0 1 1 1 0 Fungal mating-type pheromone DUF99 PF01949.16 gi|282164616|ref|YP_003357001.1| - 6.6e-60 201.6 0.1 7.5e-60 201.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Endonuclease_5 PF04493.14 gi|282164616|ref|YP_003357001.1| - 0.0013 18.5 0.1 0.0025 17.5 0.1 1.4 1 1 0 1 1 1 1 Endonuclease V YhfC PF10086.9 gi|282164617|ref|YP_003357002.1| - 3.7e-33 114.8 18.2 5.7e-33 114.2 18.2 1.4 1 0 0 1 1 1 1 YhfC intramembrane metalloprotease SKG6 PF08693.10 gi|282164617|ref|YP_003357002.1| - 0.089 12.2 0.3 0.089 12.2 0.3 3.8 4 0 0 4 4 4 0 Transmembrane alpha-helix domain SLATT_2 PF18183.1 gi|282164617|ref|YP_003357002.1| - 0.16 11.8 0.7 0.25 11.1 0.7 1.2 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 2 Usp PF00582.26 gi|282164618|ref|YP_003357003.1| - 1.1e-23 84.3 0.1 1.6e-23 83.8 0.1 1.3 1 1 0 1 1 1 1 Universal stress protein family Acetyltransf_3 PF13302.7 gi|282164619|ref|YP_003357004.1| - 2.9e-21 76.6 0.0 3.9e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|282164619|ref|YP_003357004.1| - 7.9e-09 35.8 0.0 1.1e-08 35.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|282164619|ref|YP_003357004.1| - 0.0002 21.5 0.0 0.0002 21.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|282164619|ref|YP_003357004.1| - 0.019 14.6 0.0 0.048 13.4 0.0 1.6 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|282164619|ref|YP_003357004.1| - 0.064 12.8 0.0 0.08 12.5 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase Tom5 PF10642.9 gi|282164620|ref|YP_003357005.1| - 0.24 11.5 0.6 0.24 11.5 0.6 2.0 2 0 0 2 2 2 0 Mitochondrial import receptor subunit or translocase TIP39 PF14980.6 gi|282164621|ref|YP_003357006.1| - 0.23 11.4 1.2 0.37 10.7 1.2 1.4 1 0 0 1 1 1 0 TIP39 peptide Aminotran_1_2 PF00155.21 gi|282164622|ref|YP_003357007.1| - 1.2e-45 156.3 0.0 1.9e-45 155.6 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|282164622|ref|YP_003357007.1| - 0.048 12.6 0.0 0.12 11.3 0.0 1.6 1 1 0 1 1 1 0 Aminotransferase class-V DUF5053 PF16476.5 gi|282164622|ref|YP_003357007.1| - 0.14 11.8 0.1 0.72 9.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5053) CobD_Cbib PF03186.13 gi|282164623|ref|YP_003357008.1| - 4.5e-90 301.6 0.2 5.9e-90 301.2 0.2 1.1 1 0 0 1 1 1 1 CobD/Cbib protein AmpE PF17113.5 gi|282164623|ref|YP_003357008.1| - 0.28 10.5 0.0 0.28 10.5 0.0 2.1 3 0 0 3 3 3 0 Regulatory signalling modulator protein AmpE CobS PF02654.15 gi|282164624|ref|YP_003357009.1| - 3.1e-40 138.6 20.1 3.6e-40 138.3 20.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.7 gi|282164625|ref|YP_003357010.1| - 3.8e-20 72.8 0.2 5.6e-20 72.3 0.1 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|282164625|ref|YP_003357010.1| - 3.2e-12 46.7 0.0 5.1e-12 46.0 0.0 1.4 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|282164625|ref|YP_003357010.1| - 5.8e-09 36.2 0.0 7.6e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|282164625|ref|YP_003357010.1| - 0.03 13.9 0.1 0.08 12.5 0.0 1.7 2 0 0 2 2 2 0 Nucleotidyl transferase DUF2064 PF09837.9 gi|282164625|ref|YP_003357010.1| - 0.038 13.8 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) GvpH PF05455.11 gi|282164625|ref|YP_003357010.1| - 0.11 12.5 0.5 0.17 11.9 0.5 1.3 1 0 0 1 1 1 0 GvpH DUF1743 PF08489.11 gi|282164626|ref|YP_003357011.1| - 5.8e-09 36.0 0.0 2.6e-05 24.3 0.0 3.6 2 1 0 2 2 2 2 Domain of unknown function (DUF1743) Radical_SAM PF04055.21 gi|282164627|ref|YP_003357012.1| - 2.3e-15 57.3 0.1 3.9e-15 56.6 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Hema_stalk PF08720.10 gi|282164627|ref|YP_003357012.1| - 0.028 14.1 0.1 1.3 8.7 0.0 2.5 2 1 1 3 3 3 0 Influenza C hemagglutinin stalk DUF2540 PF10802.8 gi|282164627|ref|YP_003357012.1| - 0.12 12.5 0.0 0.64 10.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2540) TssR PF17643.1 gi|282164627|ref|YP_003357012.1| - 0.2 9.5 0.0 0.28 9.1 0.0 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssR TPP_enzyme_N PF02776.18 gi|282164629|ref|YP_003357014.1| - 1.1e-09 38.1 0.1 2e-07 30.8 0.1 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|282164629|ref|YP_003357014.1| - 2.2e-08 34.1 0.0 4.6e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|282164629|ref|YP_003357014.1| - 0.043 13.6 0.0 0.089 12.5 0.0 1.4 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HTH_11 PF08279.12 gi|282164629|ref|YP_003357014.1| - 0.18 11.8 0.0 29 4.7 0.0 2.5 2 0 0 2 2 2 0 HTH domain zf-SCNM1 PF15803.5 gi|282164629|ref|YP_003357014.1| - 0.58 9.8 0.0 0.58 9.8 0.0 2.4 3 0 0 3 3 3 0 Zinc-finger of sodium channel modifier 1 HMGL-like PF00682.19 gi|282164630|ref|YP_003357015.1| - 7.4e-80 268.3 1.9 1e-79 267.9 1.9 1.2 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|282164630|ref|YP_003357015.1| - 0.00029 20.3 0.1 0.00065 19.2 0.0 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF561 PF04481.12 gi|282164630|ref|YP_003357015.1| - 0.016 14.4 0.0 0.56 9.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF561) CcdA PF07362.12 gi|282164630|ref|YP_003357015.1| - 0.13 12.7 0.8 2.8 8.4 0.1 2.9 2 1 0 2 2 2 0 Post-segregation antitoxin CcdA Aconitase PF00330.20 gi|282164631|ref|YP_003357016.1| - 9.7e-96 321.5 6.6 1.4e-93 314.4 6.6 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|282164631|ref|YP_003357016.1| - 0.0022 16.8 0.1 0.0034 16.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) RelB PF04221.12 gi|282164631|ref|YP_003357016.1| - 0.016 15.2 0.1 3.9 7.5 0.0 2.4 2 0 0 2 2 2 0 RelB antitoxin Aconitase_C PF00694.19 gi|282164632|ref|YP_003357017.1| - 9e-21 74.6 0.0 2.1e-20 73.4 0.0 1.6 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|282164632|ref|YP_003357017.1| - 0.0043 16.7 0.1 0.057 13.0 0.1 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.20 gi|282164633|ref|YP_003357018.1| - 4.6e-93 312.1 0.0 5.4e-93 311.9 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Usp PF00582.26 gi|282164635|ref|YP_003357020.1| - 5.6e-28 98.2 0.1 1.7e-11 44.8 0.1 3.5 2 2 1 3 3 3 3 Universal stress protein family HisKA_2 PF07568.12 gi|282164635|ref|YP_003357020.1| - 0.0092 16.1 0.0 4.9 7.3 0.0 2.5 2 0 0 2 2 2 2 Histidine kinase BMC PF00936.19 gi|282164635|ref|YP_003357020.1| - 0.083 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 BMC domain AA_permease_2 PF13520.6 gi|282164636|ref|YP_003357021.1| - 1.1e-37 129.9 47.1 1.4e-37 129.6 47.1 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|282164636|ref|YP_003357021.1| - 8.1e-34 117.2 0.7 1e-14 55.2 0.1 3.2 2 1 0 2 2 2 2 Universal stress protein family AA_permease PF00324.21 gi|282164636|ref|YP_003357021.1| - 1.1e-28 100.1 36.2 1.6e-28 99.5 36.2 1.2 1 0 0 1 1 1 1 Amino acid permease ETF PF01012.21 gi|282164636|ref|YP_003357021.1| - 0.00018 21.5 0.7 0.0047 16.8 0.1 2.3 2 0 0 2 2 2 1 Electron transfer flavoprotein domain KdpA PF03814.15 gi|282164637|ref|YP_003357022.1| - 5.7e-193 642.0 22.9 7.6e-193 641.6 22.9 1.1 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit Trp_oprn_chp PF09534.10 gi|282164637|ref|YP_003357022.1| - 8.5 6.1 8.2 9.2 6.0 3.5 2.7 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) E1-E2_ATPase PF00122.20 gi|282164638|ref|YP_003357023.1| - 1.4e-31 109.5 3.7 1.4e-31 109.5 3.7 2.7 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|282164638|ref|YP_003357023.1| - 1.5e-31 110.3 0.3 2.4e-31 109.6 0.3 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|282164638|ref|YP_003357023.1| - 7.7e-06 25.8 1.8 0.00044 20.1 0.9 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|282164638|ref|YP_003357023.1| - 2.6e-05 24.7 0.0 8e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cadherin_4 PF17803.1 gi|282164638|ref|YP_003357023.1| - 0.16 12.6 1.8 1 10.1 1.8 2.4 1 0 0 1 1 1 0 Bacterial cadherin-like domain KdpC PF02669.15 gi|282164639|ref|YP_003357024.1| - 3.2e-58 196.6 0.0 4.1e-58 196.2 0.0 1.1 1 0 0 1 1 1 1 K+-transporting ATPase, c chain Usp PF00582.26 gi|282164640|ref|YP_003357025.1| - 4.2e-31 108.4 0.0 1.1e-13 51.8 0.0 3.1 2 1 0 2 2 2 2 Universal stress protein family DUF3164 PF11363.8 gi|282164640|ref|YP_003357025.1| - 0.057 13.0 0.0 0.087 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3164) SIMPL PF04402.14 gi|282164641|ref|YP_003357026.1| - 9.1e-51 173.2 7.7 1.1e-50 172.9 7.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) PALP PF00291.25 gi|282164645|ref|YP_003357030.1| - 2.5e-43 148.6 0.0 3.1e-43 148.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Tsi6 PF18660.1 gi|282164646|ref|YP_003357031.1| - 0.17 11.9 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 Tsi6 SIS PF01380.22 gi|282164647|ref|YP_003357032.1| - 1.8e-08 34.3 0.0 0.0019 18.0 0.0 2.4 2 0 0 2 2 2 2 SIS domain DUF1232 PF06803.12 gi|282164648|ref|YP_003357033.1| - 1.7e-15 56.5 6.8 2.4e-15 56.0 6.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) E1-E2_ATPase PF00122.20 gi|282164649|ref|YP_003357034.1| - 1.4e-46 158.3 0.1 1.4e-46 158.3 0.1 3.0 3 1 1 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|282164649|ref|YP_003357034.1| - 1.6e-21 76.8 12.2 8.9e-21 74.4 10.0 2.5 2 1 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.26 gi|282164649|ref|YP_003357034.1| - 2.3e-18 65.6 0.1 5.9e-18 64.3 0.1 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase PF00702.26 gi|282164649|ref|YP_003357034.1| - 1.8e-17 64.4 0.3 6.7e-17 62.5 0.3 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|282164649|ref|YP_003357034.1| - 0.0031 17.6 0.0 0.0092 16.0 0.0 1.8 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|282164649|ref|YP_003357034.1| - 0.005 16.6 0.6 0.011 15.5 0.3 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Peptidase_U4 PF03419.13 gi|282164649|ref|YP_003357034.1| - 6.3 6.0 9.3 1.2 8.4 4.5 2.0 1 1 0 1 1 1 0 Sporulation factor SpoIIGA CRS1_YhbY PF01985.21 gi|282164650|ref|YP_003357035.1| - 5.1e-19 68.2 1.7 5.5e-19 68.1 1.7 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_L10 PF00466.20 gi|282164650|ref|YP_003357035.1| - 0.0099 16.0 0.8 0.018 15.2 0.8 1.5 1 1 0 1 1 1 1 Ribosomal protein L10 CBS PF00571.28 gi|282164651|ref|YP_003357036.1| - 8.7e-24 83.7 3.8 8.8e-12 45.3 0.5 2.5 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|282164651|ref|YP_003357036.1| - 4.8e-13 49.2 0.1 2.4e-12 47.0 0.1 2.0 1 1 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|282164651|ref|YP_003357036.1| - 0.038 12.8 0.0 0.07 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) ParBc_2 PF08857.11 gi|282164651|ref|YP_003357036.1| - 0.047 13.8 0.0 0.26 11.3 0.0 2.0 1 1 0 1 1 1 0 Putative ParB-like nuclease PRA-PH PF01503.17 gi|282164652|ref|YP_003357037.1| - 2.1e-17 63.3 0.0 2.5e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|282164652|ref|YP_003357037.1| - 0.00079 19.6 0.7 0.0011 19.1 0.2 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain AIRC PF00731.20 gi|282164652|ref|YP_003357037.1| - 0.076 12.6 0.0 0.095 12.3 0.0 1.2 1 0 0 1 1 1 0 AIR carboxylase HTH_24 PF13412.6 gi|282164654|ref|YP_003357039.1| - 4.8e-20 70.9 0.0 9.3e-11 41.1 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|282164654|ref|YP_003357039.1| - 1.8e-09 37.4 0.0 3.8e-06 26.7 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|282164654|ref|YP_003357039.1| - 8.6e-09 35.1 0.0 0.0017 18.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|282164654|ref|YP_003357039.1| - 1.5e-08 34.4 0.0 3.1e-05 23.8 0.0 2.3 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|282164654|ref|YP_003357039.1| - 3.6e-05 23.6 0.0 0.0016 18.2 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.6 gi|282164654|ref|YP_003357039.1| - 0.00032 21.1 0.0 0.39 11.2 0.0 2.3 1 1 1 2 2 2 2 Helix-turn-helix domain HTH_20 PF12840.7 gi|282164654|ref|YP_003357039.1| - 0.00064 19.7 0.0 0.15 12.1 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|282164654|ref|YP_003357039.1| - 0.0018 18.0 0.0 0.03 14.1 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|282164654|ref|YP_003357039.1| - 0.0028 17.5 0.1 0.05 13.5 0.0 2.1 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_10 PF04967.12 gi|282164654|ref|YP_003357039.1| - 0.003 17.3 0.0 1.4 8.8 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain HTH_41 PF14502.6 gi|282164654|ref|YP_003357039.1| - 0.0055 16.4 0.0 0.39 10.4 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|282164654|ref|YP_003357039.1| - 0.0056 16.7 0.0 0.027 14.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_11 PF08279.12 gi|282164654|ref|YP_003357039.1| - 0.0066 16.4 0.0 2.8 7.9 0.0 2.3 2 0 0 2 2 2 1 HTH domain GerE PF00196.19 gi|282164654|ref|YP_003357039.1| - 0.013 15.0 0.0 5.3 6.7 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family CDC13_N PF16853.5 gi|282164654|ref|YP_003357039.1| - 0.015 14.8 1.4 0.02 14.4 1.4 1.3 1 0 0 1 1 1 0 Cell division control protein 13 N-terminus RP-C PF03428.13 gi|282164654|ref|YP_003357039.1| - 0.024 14.3 0.0 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_23 PF13384.6 gi|282164654|ref|YP_003357039.1| - 0.027 14.3 0.0 1 9.3 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain MerR_1 PF13411.6 gi|282164654|ref|YP_003357039.1| - 0.035 14.2 0.0 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 MerR HTH family regulatory protein HTH_Tnp_4 PF13613.6 gi|282164654|ref|YP_003357039.1| - 0.05 13.4 0.0 0.19 11.4 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_Crp_2 PF13545.6 gi|282164654|ref|YP_003357039.1| - 0.088 12.8 0.0 0.53 10.3 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_psq PF05225.16 gi|282164654|ref|YP_003357039.1| - 0.094 12.5 0.0 3.2 7.6 0.0 2.6 3 0 0 3 3 3 0 helix-turn-helix, Psq domain Rrf2 PF02082.20 gi|282164654|ref|YP_003357039.1| - 0.11 12.9 0.0 4.3 7.8 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator HTH_26 PF13443.6 gi|282164654|ref|YP_003357039.1| - 0.14 12.6 0.2 1.4 9.4 0.0 2.4 2 1 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF1189 PF06691.11 gi|282164654|ref|YP_003357039.1| - 3.8 7.0 7.4 0.42 10.1 0.5 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1189) Rhodanese PF00581.20 gi|282164655|ref|YP_003357040.1| - 2.1e-21 76.4 0.0 3.4e-14 53.2 0.0 2.6 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|282164655|ref|YP_003357040.1| - 2.5e-07 30.9 0.8 1.9e-06 28.1 0.6 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DeoC PF01791.9 gi|282164656|ref|YP_003357041.1| - 9.3e-51 172.7 0.4 1.1e-50 172.4 0.4 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase BPL_C PF02237.17 gi|282164656|ref|YP_003357041.1| - 0.016 15.1 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain SapA PF02199.15 gi|282164656|ref|YP_003357041.1| - 0.1 12.9 0.3 6.1 7.2 0.1 2.3 2 0 0 2 2 2 0 Saposin A-type domain Metalloenzyme PF01676.18 gi|282164657|ref|YP_003357042.1| - 1.1e-07 31.6 0.0 5.1e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|282164657|ref|YP_003357042.1| - 0.0009 18.9 0.1 0.0016 18.1 0.0 1.6 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4147 PF13660.6 gi|282164658|ref|YP_003357043.1| - 7.8e-76 254.6 0.0 1.1e-75 254.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|282164658|ref|YP_003357043.1| - 8.8e-36 122.4 1.9 1.8e-35 121.4 1.9 1.6 1 0 0 1 1 1 1 MOFRL family FlpD PF02662.16 gi|282164659|ref|YP_003357044.1| - 2.6e-25 88.8 0.0 8.9e-25 87.1 0.0 2.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.27 gi|282164659|ref|YP_003357044.1| - 9.2e-23 79.1 31.6 9.2e-08 31.6 3.0 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282164659|ref|YP_003357044.1| - 7e-17 61.3 24.5 2.4e-08 33.9 4.2 4.1 3 1 0 3 3 3 3 4Fe-4S dicluster domain Pyr_redox_2 PF07992.14 gi|282164659|ref|YP_003357044.1| - 1.8e-16 60.3 0.7 1.9e-08 33.9 0.5 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|282164659|ref|YP_003357044.1| - 1.6e-14 54.2 27.8 1.2e-06 29.0 4.5 5.0 3 2 2 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282164659|ref|YP_003357044.1| - 7.3e-12 44.8 38.4 1.9e-05 24.6 2.3 5.2 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282164659|ref|YP_003357044.1| - 1.9e-11 44.0 25.9 5.3e-06 26.5 11.2 4.1 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282164659|ref|YP_003357044.1| - 2.6e-11 44.3 21.4 0.0034 18.3 0.2 5.0 3 1 2 5 5 5 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|282164659|ref|YP_003357044.1| - 3.2e-11 43.2 22.1 0.0014 18.7 0.6 5.2 5 0 0 5 5 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282164659|ref|YP_003357044.1| - 3.8e-11 42.4 29.1 7e-05 22.7 3.2 4.9 4 0 0 4 4 4 3 4Fe-4S binding domain DAO PF01266.24 gi|282164659|ref|YP_003357044.1| - 7.2e-10 39.0 1.5 1.9e-07 31.0 0.4 2.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|282164659|ref|YP_003357044.1| - 7.7e-10 38.7 0.0 1.1e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|282164659|ref|YP_003357044.1| - 3.8e-09 36.6 0.1 8.1e-09 35.6 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_15 PF13459.6 gi|282164659|ref|YP_003357044.1| - 2e-08 34.8 15.8 0.026 15.2 1.0 4.9 4 0 0 4 4 4 3 4Fe-4S single cluster domain GIDA PF01134.22 gi|282164659|ref|YP_003357044.1| - 2.6e-08 33.4 0.5 1.1e-06 28.1 1.1 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|282164659|ref|YP_003357044.1| - 1.1e-06 28.1 0.1 2.2e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|282164659|ref|YP_003357044.1| - 1.3e-06 27.8 4.9 1.8e-06 27.3 2.6 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|282164659|ref|YP_003357044.1| - 8.3e-06 26.3 3.0 0.00047 20.7 1.0 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_18 PF13746.6 gi|282164659|ref|YP_003357044.1| - 3.7e-05 23.9 12.9 0.013 15.6 1.5 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282164659|ref|YP_003357044.1| - 4.3e-05 23.9 26.2 0.0039 17.6 11.0 4.2 2 2 2 4 4 3 2 4Fe-4S dicluster domain FAD_binding_3 PF01494.19 gi|282164659|ref|YP_003357044.1| - 5.3e-05 22.6 1.0 9.7e-05 21.8 1.0 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|282164659|ref|YP_003357044.1| - 6e-05 23.5 29.2 0.056 14.0 2.0 4.9 3 2 3 6 6 5 3 4Fe-4S dicluster domain Lycopene_cycl PF05834.12 gi|282164659|ref|YP_003357044.1| - 0.0001 21.5 0.3 0.00061 18.9 0.1 2.3 3 0 0 3 3 3 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|282164659|ref|YP_003357044.1| - 0.00024 20.1 1.4 0.0012 17.7 0.4 2.1 2 0 0 2 2 2 1 Tryptophan halogenase HI0933_like PF03486.14 gi|282164659|ref|YP_003357044.1| - 0.00035 19.4 2.5 0.00063 18.6 2.5 1.4 1 0 0 1 1 1 1 HI0933-like protein Fer4_13 PF13370.6 gi|282164659|ref|YP_003357044.1| - 0.0011 19.4 27.8 0.02 15.4 1.5 4.7 4 0 0 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I Amino_oxidase PF01593.24 gi|282164659|ref|YP_003357044.1| - 0.0036 16.7 0.0 0.0066 15.8 0.0 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|282164659|ref|YP_003357044.1| - 0.018 14.3 2.8 0.12 11.6 0.6 2.5 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_3 PF12798.7 gi|282164659|ref|YP_003357044.1| - 0.023 15.6 5.6 0.023 15.6 5.6 6.2 8 0 0 8 8 4 0 4Fe-4S binding domain AlaDh_PNT_C PF01262.21 gi|282164659|ref|YP_003357044.1| - 0.064 12.5 0.8 0.17 11.2 0.2 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Fer4_4 PF12800.7 gi|282164659|ref|YP_003357044.1| - 0.066 13.8 35.4 0.052 14.1 3.4 4.4 4 0 0 4 4 3 0 4Fe-4S binding domain NAD_binding_9 PF13454.6 gi|282164659|ref|YP_003357044.1| - 0.078 13.0 3.2 1.1 9.2 0.3 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|282164659|ref|YP_003357044.1| - 0.079 12.8 0.4 0.14 12.1 0.4 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|282164659|ref|YP_003357044.1| - 0.14 12.6 0.0 0.38 11.2 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding MCRA PF06100.11 gi|282164659|ref|YP_003357044.1| - 0.31 9.8 0.0 0.43 9.3 0.0 1.1 1 0 0 1 1 1 0 MCRA family CCG PF02754.16 gi|282164660|ref|YP_003357045.1| - 4.2e-19 68.5 0.2 1.2e-13 51.0 0.1 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|282164661|ref|YP_003357046.1| - 6.3e-10 39.4 7.3 1.2e-09 38.4 7.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282164661|ref|YP_003357046.1| - 1.5e-08 34.7 8.0 3e-08 33.7 8.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282164661|ref|YP_003357046.1| - 2.3e-08 34.0 9.0 6.6e-08 32.5 9.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282164661|ref|YP_003357046.1| - 1.7e-07 31.7 7.4 3.5e-07 30.7 7.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282164661|ref|YP_003357046.1| - 7.4e-07 29.6 9.3 1.5e-06 28.6 9.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282164661|ref|YP_003357046.1| - 2.4e-06 28.3 4.6 0.016 16.2 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|282164661|ref|YP_003357046.1| - 7.1e-05 23.0 12.6 0.00028 21.2 2.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.27 gi|282164661|ref|YP_003357046.1| - 0.00019 21.1 13.9 0.0022 17.7 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282164661|ref|YP_003357046.1| - 0.00042 20.3 14.4 0.0012 18.8 3.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|282164661|ref|YP_003357046.1| - 0.0027 18.4 2.4 0.24 12.1 0.2 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|282164661|ref|YP_003357046.1| - 0.0031 17.5 12.3 0.0051 16.8 2.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|282164661|ref|YP_003357046.1| - 0.0074 16.8 2.0 0.0074 16.8 2.0 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|282164661|ref|YP_003357046.1| - 0.013 16.3 0.2 0.013 16.3 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282164661|ref|YP_003357046.1| - 0.041 14.0 9.8 0.34 11.1 9.8 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282164661|ref|YP_003357046.1| - 1.1 9.4 6.3 0.87 9.8 0.7 2.2 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|282164661|ref|YP_003357046.1| - 7.4 7.8 18.0 5.7 8.1 6.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain PALP PF00291.25 gi|282164662|ref|YP_003357047.1| - 1.1e-32 113.7 0.0 1.4e-32 113.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TPP_enzyme_C PF02775.21 gi|282164663|ref|YP_003357048.1| - 2.2e-15 56.8 0.3 6.8e-15 55.2 0.0 1.9 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|282164663|ref|YP_003357048.1| - 1.1e-10 41.4 0.0 4.7e-10 39.3 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Cupin_1 PF00190.22 gi|282164663|ref|YP_003357048.1| - 0.04 13.5 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 Cupin KGG PF10685.9 gi|282164665|ref|YP_003357050.1| - 2.3e-16 59.5 17.3 0.00029 21.0 0.1 4.5 4 0 0 4 4 4 4 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282164665|ref|YP_003357050.1| - 5.4e-09 36.5 21.1 2.2e-05 24.9 13.3 2.5 1 1 2 3 3 3 3 Small hydrophilic plant seed protein TUSC2 PF15000.6 gi|282164665|ref|YP_003357050.1| - 0.15 12.4 8.1 14 6.0 0.2 3.3 1 1 2 3 3 3 0 Tumour suppressor candidate 2 SASP PF00269.20 gi|282164665|ref|YP_003357050.1| - 0.24 11.4 10.0 1.3 9.1 4.0 2.6 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type Integrase_H2C2 PF17921.1 gi|282164665|ref|YP_003357050.1| - 4.5 7.5 5.1 20 5.3 0.1 2.7 2 1 1 3 3 3 0 Integrase zinc binding domain KGG PF10685.9 gi|282164666|ref|YP_003357051.1| - 2e-12 46.9 7.9 0.00028 21.1 0.2 3.4 3 0 0 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282164666|ref|YP_003357051.1| - 1.5e-06 28.7 16.2 6.3e-05 23.4 8.0 2.0 1 1 1 2 2 2 2 Small hydrophilic plant seed protein SASP PF00269.20 gi|282164666|ref|YP_003357051.1| - 0.0011 18.9 6.1 0.039 14.0 1.1 2.3 1 1 1 2 2 2 2 Small, acid-soluble spore proteins, alpha/beta type Integrase_H2C2 PF17921.1 gi|282164666|ref|YP_003357051.1| - 0.8 9.9 4.1 37 4.5 0.4 2.9 1 1 2 3 3 3 0 Integrase zinc binding domain DUF2795 PF11387.8 gi|282164667|ref|YP_003357052.1| - 1.2e-18 67.0 0.0 1.4e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) zf-B_box PF00643.24 gi|282164668|ref|YP_003357053.1| - 0.0036 17.4 8.4 0.0055 16.8 3.9 2.1 1 1 1 2 2 2 1 B-box zinc finger zinc-ribbons_6 PF07191.12 gi|282164668|ref|YP_003357053.1| - 0.04 13.9 6.3 0.095 12.7 6.3 1.8 1 1 0 1 1 1 0 zinc-ribbons C6_DPF PF10170.9 gi|282164668|ref|YP_003357053.1| - 0.052 13.9 4.5 0.071 13.5 4.5 1.3 1 0 0 1 1 1 0 Cysteine-rich domain DUF4428 PF14471.6 gi|282164668|ref|YP_003357053.1| - 0.053 13.5 11.9 1.3 9.0 11.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) zf-C2HC5 PF06221.13 gi|282164668|ref|YP_003357053.1| - 0.077 13.0 7.4 0.11 12.5 7.4 1.4 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-CHY PF05495.12 gi|282164668|ref|YP_003357053.1| - 0.16 12.5 6.2 0.2 12.2 6.2 1.2 1 0 0 1 1 1 0 CHY zinc finger Prok-RING_2 PF14445.6 gi|282164668|ref|YP_003357053.1| - 0.29 11.3 7.1 0.18 12.0 5.8 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 2 DUF2180 PF09947.9 gi|282164668|ref|YP_003357053.1| - 0.74 9.8 11.8 3 7.9 11.8 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2180) zf-dskA_traR PF01258.17 gi|282164668|ref|YP_003357053.1| - 0.95 9.5 9.1 22 5.1 9.1 2.9 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Prok-RING_4 PF14447.6 gi|282164668|ref|YP_003357053.1| - 1.2 9.1 9.1 3.1 7.7 9.1 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 FYVE PF01363.21 gi|282164668|ref|YP_003357053.1| - 3.8 7.7 11.7 80 3.5 11.7 2.3 1 1 0 1 1 1 0 FYVE zinc finger Peptidase_C15 PF01470.17 gi|282164669|ref|YP_003357054.1| - 0.014 15.6 0.0 0.022 15.0 0.0 1.3 1 1 0 1 1 1 0 Pyroglutamyl peptidase 4HBT PF03061.22 gi|282164670|ref|YP_003357055.1| - 4.9e-11 42.8 0.1 6.9e-11 42.3 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|282164670|ref|YP_003357055.1| - 0.0067 16.6 0.0 0.0085 16.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) MTH865 PF07747.11 gi|282164671|ref|YP_003357056.1| - 1.5e-23 82.4 0.1 1.8e-23 82.1 0.1 1.1 1 0 0 1 1 1 1 MTH865-like family SnoaL PF07366.12 gi|282164672|ref|YP_003357057.1| - 7.2e-34 116.3 0.0 8.3e-34 116.1 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|282164672|ref|YP_003357057.1| - 1.4e-18 67.4 0.0 1.7e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain UbiA PF01040.18 gi|282164673|ref|YP_003357058.1| - 1.4e-24 86.8 26.3 1.4e-24 86.8 26.3 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF998 PF06197.13 gi|282164674|ref|YP_003357059.1| - 1.3e-19 70.6 18.1 1.5e-19 70.3 18.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF2070 PF09843.9 gi|282164674|ref|YP_003357059.1| - 0.15 10.3 8.6 0.18 10.0 8.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CxxCxxCC PF03692.15 gi|282164675|ref|YP_003357060.1| - 0.00049 20.7 3.7 0.00092 19.8 3.2 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Sortilin-Vps10 PF15902.5 gi|282164676|ref|YP_003357061.1| - 0.00011 21.2 3.1 0.00062 18.7 0.4 2.5 1 1 1 2 2 2 2 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|282164676|ref|YP_003357061.1| - 0.00049 19.7 17.0 0.41 10.8 0.3 4.7 5 0 0 5 5 5 3 BNR/Asp-box repeat PLRV_ORF5 PF01690.17 gi|282164677|ref|YP_003357062.1| - 0.59 8.8 7.4 0.89 8.2 7.4 1.2 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein TALPID3 PF15324.6 gi|282164677|ref|YP_003357062.1| - 1.3 6.6 6.0 1.7 6.2 6.0 1.1 1 0 0 1 1 1 0 Hedgehog signalling target HAD_2 PF13419.6 gi|282164678|ref|YP_003357063.1| - 1.1e-35 123.3 0.0 1.4e-35 122.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|282164678|ref|YP_003357063.1| - 1.1e-20 74.8 0.6 4.3e-20 72.9 0.6 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|282164678|ref|YP_003357063.1| - 2.2e-08 34.8 0.0 2.7e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|282164678|ref|YP_003357063.1| - 4.5e-07 29.9 0.2 0.00013 22.0 0.1 3.0 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase NT5C PF06941.12 gi|282164678|ref|YP_003357063.1| - 0.0051 16.7 0.0 0.021 14.7 0.0 1.9 1 1 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) NIF PF03031.18 gi|282164678|ref|YP_003357063.1| - 0.021 14.6 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 NLI interacting factor-like phosphatase Put_Phosphatase PF06888.12 gi|282164678|ref|YP_003357063.1| - 0.051 13.0 0.0 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 Putative Phosphatase Peripla_BP_6 PF13458.6 gi|282164678|ref|YP_003357063.1| - 0.057 13.1 0.2 0.16 11.6 0.2 1.6 1 1 1 2 2 2 0 Periplasmic binding protein Hydrolase_3 PF08282.12 gi|282164678|ref|YP_003357063.1| - 0.087 12.5 0.2 0.31 10.8 0.0 2.0 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DnaJ PF00226.31 gi|282164679|ref|YP_003357064.1| - 1.3e-25 89.3 3.0 2.1e-25 88.6 3.0 1.3 1 0 0 1 1 1 1 DnaJ domain CarboxypepD_reg PF13620.6 gi|282164680|ref|YP_003357065.1| - 4.4e-08 33.3 0.7 2.5e-07 30.9 0.7 2.1 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|282164680|ref|YP_003357065.1| - 0.0058 16.6 0.8 0.012 15.5 0.1 2.1 2 1 0 2 2 2 1 Bacterial Ig-like domain (group 1) SdrD_B PF17210.3 gi|282164680|ref|YP_003357065.1| - 0.01 16.0 0.1 0.028 14.6 0.1 1.6 1 1 0 1 1 1 0 SdrD B-like domain CarbopepD_reg_2 PF13715.6 gi|282164680|ref|YP_003357065.1| - 0.094 12.7 0.1 0.26 11.3 0.0 1.8 2 0 0 2 2 2 0 CarboxypepD_reg-like domain Acetyltransf_4 PF13420.7 gi|282164681|ref|YP_003357066.1| - 1.1e-15 58.1 0.0 1.2e-15 57.9 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|282164681|ref|YP_003357066.1| - 2.5e-14 53.5 0.0 3.1e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|282164681|ref|YP_003357066.1| - 4.3e-10 40.4 0.1 5.1e-10 40.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|282164681|ref|YP_003357066.1| - 5e-09 36.5 0.0 6.8e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|282164681|ref|YP_003357066.1| - 5.7e-07 29.5 0.0 8e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|282164681|ref|YP_003357066.1| - 2.2e-05 24.3 0.1 3.3e-05 23.7 0.1 1.4 1 1 0 1 1 1 1 FR47-like protein GNAT_acetyltran PF12746.7 gi|282164681|ref|YP_003357066.1| - 0.0006 19.5 0.0 0.00076 19.1 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_CG PF14542.6 gi|282164681|ref|YP_003357066.1| - 0.016 15.3 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|282164681|ref|YP_003357066.1| - 0.018 15.1 0.0 0.041 14.0 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|282164681|ref|YP_003357066.1| - 0.082 12.6 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MucB_RseB_C PF17188.4 gi|282164681|ref|YP_003357066.1| - 0.13 12.5 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 MucB/RseB C-terminal domain Usp PF00582.26 gi|282164682|ref|YP_003357067.1| - 3.6e-33 115.0 0.2 4.2e-33 114.8 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family Lipoprotein_Ltp PF07553.11 gi|282164682|ref|YP_003357067.1| - 0.11 12.8 0.0 0.26 11.6 0.0 1.6 1 0 0 1 1 1 0 Host cell surface-exposed lipoprotein TA0956 PF11513.8 gi|282164683|ref|YP_003357068.1| - 0.099 12.9 0.0 0.26 11.5 0.0 1.7 1 0 0 1 1 1 0 Thermoplasma acidophilum protein TA0956 Big_1 PF02369.16 gi|282164684|ref|YP_003357069.1| - 3.6e-08 33.3 0.5 0.00069 19.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 gi|282164684|ref|YP_003357069.1| - 1.3e-05 25.3 1.3 2.7e-05 24.3 0.5 1.9 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Dioxygenase_C PF00775.21 gi|282164684|ref|YP_003357069.1| - 0.012 15.0 0.0 0.56 9.6 0.0 2.3 2 0 0 2 2 2 0 Dioxygenase TPR_1 PF00515.28 gi|282164685|ref|YP_003357070.1| - 1.4e-20 72.2 9.1 4.3e-05 23.1 0.0 7.4 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282164685|ref|YP_003357070.1| - 2.1e-16 58.6 14.6 0.0054 16.8 0.0 7.7 8 0 0 8 8 7 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282164685|ref|YP_003357070.1| - 3.5e-16 59.2 17.7 1.8e-05 24.9 1.7 5.3 3 1 1 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164685|ref|YP_003357070.1| - 6.5e-10 38.4 11.7 0.0035 17.4 0.0 6.6 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282164685|ref|YP_003357070.1| - 1.2e-08 34.3 14.5 0.0012 18.7 0.0 7.2 8 0 0 8 8 7 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164685|ref|YP_003357070.1| - 4.5e-08 33.6 4.9 0.081 13.6 0.0 5.4 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282164685|ref|YP_003357070.1| - 3.2e-07 30.5 2.1 0.15 12.8 0.1 6.3 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282164685|ref|YP_003357070.1| - 4.7e-06 26.3 18.9 0.0023 17.7 0.1 6.9 8 0 0 8 8 8 2 Tetratricopeptide repeat SNAP PF14938.6 gi|282164685|ref|YP_003357070.1| - 1.8e-05 24.3 7.8 0.013 14.9 0.9 2.1 1 1 0 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_MalT PF17874.1 gi|282164685|ref|YP_003357070.1| - 9.3e-05 21.9 2.7 0.17 11.3 0.1 2.7 1 1 2 3 3 3 3 MalT-like TPR region ANAPC5 PF12862.7 gi|282164685|ref|YP_003357070.1| - 0.00026 21.0 0.2 0.013 15.6 0.1 2.8 2 0 0 2 2 2 1 Anaphase-promoting complex subunit 5 TPR_9 PF13371.6 gi|282164685|ref|YP_003357070.1| - 0.0067 16.5 1.2 38 4.5 0.1 5.1 3 2 2 5 5 5 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|282164685|ref|YP_003357070.1| - 0.0081 15.8 6.3 6.2 6.6 0.0 5.6 7 0 0 7 7 6 1 TPR repeat BTAD PF03704.17 gi|282164685|ref|YP_003357070.1| - 0.024 15.1 1.2 0.12 12.8 0.1 2.6 1 1 1 2 2 2 0 Bacterial transcriptional activator domain TPR_21 PF09976.9 gi|282164685|ref|YP_003357070.1| - 0.1 12.3 3.0 2.8 7.6 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat-like domain TPR_14 PF13428.6 gi|282164685|ref|YP_003357070.1| - 0.44 11.5 14.3 18 6.5 0.2 7.0 5 2 2 7 7 7 0 Tetratricopeptide repeat Rsm22 PF09243.10 gi|282164686|ref|YP_003357071.1| - 1.3e-05 24.6 0.0 2e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.6 gi|282164686|ref|YP_003357071.1| - 0.016 15.0 0.0 0.063 13.1 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase domain DUF2298 PF10060.9 gi|282164687|ref|YP_003357072.1| - 2e-06 26.8 8.5 2e-06 26.8 8.5 3.3 1 1 1 3 3 3 3 Uncharacterized membrane protein (DUF2298) DUF4536 PF15055.6 gi|282164687|ref|YP_003357072.1| - 0.46 10.8 3.9 7.5 6.9 0.1 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4536) DnaJ_C PF01556.18 gi|282164688|ref|YP_003357073.1| - 1.1e-40 139.1 0.1 1.5e-40 138.7 0.1 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|282164688|ref|YP_003357073.1| - 4.4e-27 94.0 2.7 4.4e-27 94.0 2.7 2.1 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|282164688|ref|YP_003357073.1| - 1.6e-13 50.8 15.1 3.5e-13 49.7 15.1 1.6 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|282164688|ref|YP_003357073.1| - 0.0053 16.7 14.2 0.043 13.8 1.5 2.4 2 0 0 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein C1_2 PF03107.16 gi|282164688|ref|YP_003357073.1| - 5.6 7.4 5.5 1.5 9.2 0.5 2.2 2 0 0 2 2 2 0 C1 domain HSP70 PF00012.20 gi|282164689|ref|YP_003357074.1| - 9.2e-240 796.9 16.0 3e-214 712.6 14.1 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.13 gi|282164689|ref|YP_003357074.1| - 2.5e-19 69.3 2.9 2.5e-19 69.3 2.9 2.0 2 1 0 2 2 2 1 MreB/Mbl protein StbA PF06406.11 gi|282164689|ref|YP_003357074.1| - 2.7e-05 23.6 4.1 0.0032 16.8 0.1 2.9 2 1 1 3 3 3 2 StbA protein FtsA PF14450.6 gi|282164689|ref|YP_003357074.1| - 0.00043 20.7 5.4 0.27 11.7 0.0 4.0 3 2 0 3 3 3 2 Cell division protein FtsA FGGY_C PF02782.16 gi|282164689|ref|YP_003357074.1| - 0.15 11.7 1.3 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain Vfa1 PF08432.10 gi|282164689|ref|YP_003357074.1| - 9.2 6.6 15.4 17 5.7 15.4 1.4 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 GrpE PF01025.19 gi|282164690|ref|YP_003357075.1| - 2.4e-47 160.7 7.0 2.9e-47 160.4 7.0 1.0 1 0 0 1 1 1 1 GrpE PDCD2_C PF04194.13 gi|282164690|ref|YP_003357075.1| - 0.9 9.6 3.8 0.8 9.7 2.4 1.6 1 1 1 2 2 2 0 Programmed cell death protein 2, C-terminal putative domain DUF1451 PF07295.11 gi|282164690|ref|YP_003357075.1| - 1.3 9.0 5.8 2.2 8.3 4.8 1.7 1 1 1 2 2 2 0 Zinc-ribbon containing domain Pirin PF02678.16 gi|282164692|ref|YP_003357077.1| - 2.6e-19 69.2 0.6 4.2e-19 68.5 0.6 1.3 1 0 0 1 1 1 1 Pirin Pirin_C_2 PF17954.1 gi|282164692|ref|YP_003357077.1| - 9.1e-17 61.0 0.0 1.3e-16 60.5 0.0 1.3 1 0 0 1 1 1 1 Quercetinase C-terminal cupin domain Cupin_2 PF07883.11 gi|282164692|ref|YP_003357077.1| - 0.0081 15.9 2.0 0.1 12.4 0.1 2.3 2 0 0 2 2 2 1 Cupin domain Response_reg PF00072.24 gi|282164693|ref|YP_003357078.1| - 5.6e-17 61.9 0.0 6.4e-17 61.7 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain BRCT_3 PF18428.1 gi|282164693|ref|YP_003357078.1| - 0.16 12.0 0.0 0.27 11.3 0.0 1.3 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain MTH865 PF07747.11 gi|282164694|ref|YP_003357079.1| - 4.6e-20 71.2 0.0 5.8e-20 70.8 0.0 1.1 1 0 0 1 1 1 1 MTH865-like family DUF3724 PF12521.8 gi|282164694|ref|YP_003357079.1| - 0.25 11.3 1.6 1.2 9.2 1.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3724) ATP_bind_3 PF01171.20 gi|282164695|ref|YP_003357080.1| - 2.6e-15 56.7 0.0 4.8e-15 55.8 0.0 1.4 2 0 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.16 gi|282164695|ref|YP_003357080.1| - 5.5e-07 28.7 0.0 9.5e-07 27.9 0.0 1.4 1 1 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|282164695|ref|YP_003357080.1| - 0.0038 17.3 0.0 0.0064 16.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.21 gi|282164695|ref|YP_003357080.1| - 0.15 11.7 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Zn_Tnp_IS91 PF14319.6 gi|282164695|ref|YP_003357080.1| - 0.17 12.0 5.4 11 6.2 0.2 3.2 3 0 0 3 3 3 0 Transposase zinc-binding domain TPR_2 PF07719.17 gi|282164697|ref|YP_003357082.1| - 2.2e-12 46.1 0.1 1.3e-06 28.1 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|282164697|ref|YP_003357082.1| - 1.7e-11 43.6 0.0 3.2e-06 26.7 0.0 2.4 2 1 0 2 2 2 2 TPR repeat TPR_1 PF00515.28 gi|282164697|ref|YP_003357082.1| - 1.4e-09 37.4 0.0 6.3e-05 22.6 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282164697|ref|YP_003357082.1| - 5.5e-09 36.1 0.2 9.4e-05 22.9 0.0 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164697|ref|YP_003357082.1| - 8.9e-07 28.6 0.0 0.0014 18.7 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282164697|ref|YP_003357082.1| - 4.5e-06 27.1 0.1 6.9e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164697|ref|YP_003357082.1| - 7.3e-06 26.5 0.1 9.8e-06 26.1 0.1 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282164697|ref|YP_003357082.1| - 6.9e-05 22.6 0.1 0.00019 21.2 0.0 1.8 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282164697|ref|YP_003357082.1| - 0.00021 21.4 0.2 11 6.7 0.0 3.6 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282164697|ref|YP_003357082.1| - 0.00035 20.8 0.6 0.0011 19.3 0.6 1.8 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_21 PF09976.9 gi|282164697|ref|YP_003357082.1| - 0.00094 18.9 0.0 0.0012 18.6 0.0 1.1 1 0 0 1 1 1 1 Tetratricopeptide repeat-like domain TPR_9 PF13371.6 gi|282164697|ref|YP_003357082.1| - 0.037 14.2 0.9 0.15 12.2 0.9 1.8 1 1 1 2 2 2 0 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|282164697|ref|YP_003357082.1| - 0.041 13.3 0.0 0.11 12.0 0.0 1.7 1 1 0 1 1 1 0 SHNi-TPR TPR_6 PF13174.6 gi|282164697|ref|YP_003357082.1| - 0.043 14.5 0.1 1.8 9.4 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat RtcB PF01139.17 gi|282164698|ref|YP_003357083.1| - 2.3e-169 564.0 0.3 2.6e-169 563.8 0.3 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Archease PF01951.16 gi|282164699|ref|YP_003357084.1| - 5.6e-40 136.8 0.2 6.2e-40 136.6 0.2 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) zf_C2H2_13 PF18508.1 gi|282164700|ref|YP_003357085.1| - 0.00017 21.1 0.1 0.00028 20.4 0.1 1.4 1 0 0 1 1 1 1 Zinc finger domain PIN_6 PF17146.4 gi|282164700|ref|YP_003357085.1| - 0.075 13.5 0.0 0.11 13.1 0.0 1.2 1 0 0 1 1 1 0 PIN domain of ribonuclease A2L_zn_ribbon PF08792.10 gi|282164700|ref|YP_003357085.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain HEAT_2 PF13646.6 gi|282164701|ref|YP_003357086.1| - 9.3e-34 115.7 14.1 1.9e-11 44.2 1.0 4.8 2 2 2 5 5 5 5 HEAT repeats HEAT_PBS PF03130.16 gi|282164701|ref|YP_003357086.1| - 1e-12 47.4 13.1 0.00013 22.3 0.0 7.8 10 0 0 10 10 10 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|282164701|ref|YP_003357086.1| - 5.4e-11 42.8 4.9 0.059 13.9 0.1 5.9 6 1 0 6 6 6 3 HEAT-like repeat HEAT PF02985.22 gi|282164701|ref|YP_003357086.1| - 1.7e-10 40.3 1.2 0.044 14.1 0.0 6.2 6 0 0 6 6 6 3 HEAT repeat Arm PF00514.23 gi|282164701|ref|YP_003357086.1| - 7.3e-09 35.4 1.0 0.0018 18.3 0.0 5.5 5 1 1 6 6 6 2 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|282164701|ref|YP_003357086.1| - 0.00028 21.0 0.8 0.95 9.5 0.1 3.5 3 1 1 4 4 4 2 non-SMC mitotic condensation complex subunit 1 IFRD PF05004.13 gi|282164701|ref|YP_003357086.1| - 0.16 11.0 1.0 61 2.6 0.0 3.9 4 1 0 5 5 5 0 Interferon-related developmental regulator (IFRD) CbiA PF01656.23 gi|282164703|ref|YP_003357088.1| - 6e-19 68.4 0.1 7.7e-19 68.0 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|282164703|ref|YP_003357088.1| - 6.9e-18 65.2 0.0 1e-17 64.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|282164703|ref|YP_003357088.1| - 2.1e-16 60.2 2.3 1.1e-15 57.8 2.3 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|282164703|ref|YP_003357088.1| - 2.7e-11 43.4 1.2 4.5e-10 39.4 1.2 2.0 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|282164703|ref|YP_003357088.1| - 8.6e-10 38.5 0.0 3.3e-09 36.6 0.0 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|282164703|ref|YP_003357088.1| - 4.3e-06 26.2 0.8 1.2e-05 24.7 0.8 1.6 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|282164703|ref|YP_003357088.1| - 0.0003 20.7 0.7 0.00062 19.7 0.8 1.6 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|282164703|ref|YP_003357088.1| - 0.0013 18.0 0.5 0.006 15.8 0.2 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|282164703|ref|YP_003357088.1| - 0.0049 16.2 0.3 0.0091 15.3 0.3 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.6 gi|282164703|ref|YP_003357088.1| - 0.05 13.2 0.8 0.09 12.3 0.8 1.5 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|282164703|ref|YP_003357088.1| - 0.099 12.4 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|282164703|ref|YP_003357088.1| - 0.13 12.0 0.3 0.59 9.9 0.1 1.9 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 gi|282164703|ref|YP_003357088.1| - 0.15 11.8 0.9 0.32 10.7 0.9 1.7 1 1 0 1 1 1 0 AAA domain dCMP_cyt_deam_1 PF00383.23 gi|282164705|ref|YP_003357090.1| - 7.1e-20 70.8 0.0 8.7e-20 70.5 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|282164705|ref|YP_003357090.1| - 1.7e-17 63.4 0.0 2.2e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase SNAD4 PF18750.1 gi|282164705|ref|YP_003357090.1| - 7.7e-05 22.8 0.0 0.00037 20.6 0.0 1.8 2 0 0 2 2 2 1 Secreted Novel AID/APOBEC-like Deaminase 4 NAD1 PF18778.1 gi|282164705|ref|YP_003357090.1| - 0.00085 19.5 0.0 0.0062 16.6 0.0 1.9 2 0 0 2 2 2 1 Novel AID APOBEC clade 1 APOBEC2 PF18772.1 gi|282164705|ref|YP_003357090.1| - 0.0036 17.4 0.0 0.033 14.2 0.0 1.9 2 0 0 2 2 2 1 APOBEC2 APOBEC_N PF08210.11 gi|282164705|ref|YP_003357090.1| - 0.012 15.5 0.0 0.025 14.5 0.0 1.6 1 1 0 1 1 1 0 APOBEC-like N-terminal domain Bd3614-deam PF14439.6 gi|282164705|ref|YP_003357090.1| - 0.017 15.2 0.7 0.054 13.6 0.2 2.0 2 1 0 2 2 2 0 Bd3614-like deaminase NAD2 PF18782.1 gi|282164705|ref|YP_003357090.1| - 0.043 13.9 0.0 0.11 12.6 0.0 1.6 2 0 0 2 2 2 0 Novel AID APOBEC clade 2 APOBEC4_like PF18774.1 gi|282164705|ref|YP_003357090.1| - 0.076 13.0 0.0 0.2 11.6 0.0 1.6 1 1 1 2 2 2 0 APOBEC4-like -AID/APOBEC-deaminase APOBEC3 PF18771.1 gi|282164705|ref|YP_003357090.1| - 0.09 12.9 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 APOBEC3 APOBEC4 PF18775.1 gi|282164705|ref|YP_003357090.1| - 0.091 12.9 0.1 2.4 8.4 0.1 2.2 2 0 0 2 2 2 0 APOBEC4 DUF2164 PF09932.9 gi|282164706|ref|YP_003357091.1| - 1.9e-21 75.9 0.9 2.3e-21 75.6 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2164) DUF5585 PF17823.1 gi|282164707|ref|YP_003357092.1| - 0.089 11.7 0.1 0.12 11.4 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5585) HisKA_7TM PF16927.5 gi|282164708|ref|YP_003357093.1| - 0.086 12.9 5.1 0.13 12.2 5.1 1.3 1 0 0 1 1 1 0 N-terminal 7TM region of histidine kinase YfhO PF09586.10 gi|282164708|ref|YP_003357093.1| - 0.089 11.0 4.8 0.12 10.6 4.8 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF2207 PF09972.9 gi|282164708|ref|YP_003357093.1| - 1.2 7.8 2.7 0.97 8.1 1.0 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF5518 PF17647.1 gi|282164709|ref|YP_003357094.1| - 0.018 15.2 17.7 0.018 15.2 17.7 3.5 2 2 1 3 3 3 0 Family of unknown function (DUF5518) DUF2000 PF09391.10 gi|282164709|ref|YP_003357094.1| - 0.14 12.1 0.3 0.33 10.9 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2000) MHC2-interact PF09307.10 gi|282164709|ref|YP_003357094.1| - 0.15 12.1 0.1 0.29 11.1 0.1 1.4 1 0 0 1 1 1 0 CLIP, MHC2 interacting HTH_45 PF14947.6 gi|282164710|ref|YP_003357095.1| - 9.3e-05 22.3 0.2 0.00013 21.9 0.2 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix ABC_tran PF00005.27 gi|282164711|ref|YP_003357096.1| - 5.1e-30 104.8 0.0 7.9e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282164711|ref|YP_003357096.1| - 4.4e-11 43.2 0.2 3.8e-05 23.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282164711|ref|YP_003357096.1| - 0.00083 18.9 0.0 0.0074 15.7 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|282164711|ref|YP_003357096.1| - 0.0047 17.5 0.1 0.0047 17.5 0.1 1.5 2 0 0 2 2 2 1 AAA domain DUF4162 PF13732.6 gi|282164711|ref|YP_003357096.1| - 0.01 16.5 0.0 0.019 15.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) SbcCD_C PF13558.6 gi|282164711|ref|YP_003357096.1| - 0.027 14.7 0.1 0.69 10.2 0.0 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|282164711|ref|YP_003357096.1| - 0.035 13.8 0.0 0.12 12.1 0.0 1.9 1 1 1 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|282164711|ref|YP_003357096.1| - 0.043 13.7 0.2 0.35 10.8 0.1 2.5 4 0 0 4 4 4 0 NTPase SRP54 PF00448.22 gi|282164711|ref|YP_003357096.1| - 0.21 11.2 0.4 0.33 10.5 0.4 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ABC2_membrane_2 PF12679.7 gi|282164712|ref|YP_003357097.1| - 1.9e-12 47.1 25.2 5.2e-12 45.7 25.2 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|282164712|ref|YP_003357097.1| - 4.4e-08 32.8 17.4 4.4e-08 32.8 17.4 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|282164712|ref|YP_003357097.1| - 2.4e-05 23.6 24.9 3.2e-05 23.2 24.4 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|282164712|ref|YP_003357097.1| - 0.00015 21.8 13.0 0.00015 21.8 13.0 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein SCIMP PF15050.6 gi|282164712|ref|YP_003357097.1| - 0.52 10.8 2.0 1.1 9.7 2.0 1.5 1 0 0 1 1 1 0 SCIMP protein ABC_tran PF00005.27 gi|282164713|ref|YP_003357098.1| - 3.8e-26 92.2 0.1 1.1e-14 55.1 0.0 3.5 3 0 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|282164713|ref|YP_003357098.1| - 6.5e-11 42.1 0.2 0.016 14.7 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|282164713|ref|YP_003357098.1| - 4.9e-10 40.1 0.0 0.00012 22.6 0.0 2.6 3 0 0 3 3 2 2 AAA ATPase domain DnaJ_CXXCXGXG PF00684.19 gi|282164713|ref|YP_003357098.1| - 7.3e-09 35.9 2.0 0.00026 21.3 0.6 3.4 3 0 0 3 3 3 1 DnaJ central domain AAA_29 PF13555.6 gi|282164713|ref|YP_003357098.1| - 1.6e-08 34.1 0.1 0.0029 17.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain UvrA_DNA-bind PF17755.1 gi|282164713|ref|YP_003357098.1| - 1.7e-07 31.6 0.1 3.6e-06 27.3 0.0 2.4 2 0 0 2 2 2 1 UvrA DNA-binding domain Viral_helicase1 PF01443.18 gi|282164713|ref|YP_003357098.1| - 2.4e-06 27.5 0.0 0.0039 16.9 0.0 2.4 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_21 PF13304.6 gi|282164713|ref|YP_003357098.1| - 3.3e-06 27.1 0.1 0.075 12.8 0.0 4.1 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|282164713|ref|YP_003357098.1| - 8.1e-06 25.8 0.8 0.24 11.1 0.1 4.1 3 1 0 4 4 4 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|282164713|ref|YP_003357098.1| - 1.3e-05 25.1 0.1 0.17 11.8 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_33 PF13671.6 gi|282164713|ref|YP_003357098.1| - 2e-05 24.8 0.0 0.29 11.3 0.0 3.0 3 0 0 3 3 2 2 AAA domain NB-ARC PF00931.22 gi|282164713|ref|YP_003357098.1| - 0.00013 21.2 2.4 0.33 10.1 0.0 3.9 3 1 1 4 4 4 1 NB-ARC domain DUF2075 PF09848.9 gi|282164713|ref|YP_003357098.1| - 0.00017 21.0 0.0 0.16 11.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.6 gi|282164713|ref|YP_003357098.1| - 0.0002 21.9 0.9 0.32 11.6 0.0 3.3 3 0 0 3 3 3 1 AAA domain cobW PF02492.19 gi|282164713|ref|YP_003357098.1| - 0.00023 20.8 0.1 0.15 11.7 0.0 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|282164713|ref|YP_003357098.1| - 0.00029 20.9 0.1 1.4 8.9 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_23 PF13476.6 gi|282164713|ref|YP_003357098.1| - 0.00033 21.2 1.8 0.1 13.1 0.2 2.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|282164713|ref|YP_003357098.1| - 0.00042 20.6 0.0 0.49 10.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|282164713|ref|YP_003357098.1| - 0.00051 19.6 0.0 0.52 9.8 0.0 2.6 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|282164713|ref|YP_003357098.1| - 0.0006 19.6 0.5 0.32 10.7 0.0 2.9 3 0 0 3 3 3 1 AAA domain MeaB PF03308.16 gi|282164713|ref|YP_003357098.1| - 0.00063 18.8 0.0 0.38 9.7 0.0 2.5 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|282164713|ref|YP_003357098.1| - 0.001 19.0 0.0 0.15 12.0 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_25 PF13481.6 gi|282164713|ref|YP_003357098.1| - 0.0011 18.6 0.0 0.89 9.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain zinc_ribbon_9 PF14369.6 gi|282164713|ref|YP_003357098.1| - 0.0015 18.7 8.9 0.18 12.1 0.2 4.2 4 0 0 4 4 4 1 zinc-ribbon APS_kinase PF01583.20 gi|282164713|ref|YP_003357098.1| - 0.0028 17.6 0.1 1.3 8.9 0.0 2.5 2 0 0 2 2 2 1 Adenylylsulphate kinase T2SSE PF00437.20 gi|282164713|ref|YP_003357098.1| - 0.004 16.3 0.2 2.7 7.0 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_24 PF13479.6 gi|282164713|ref|YP_003357098.1| - 0.0048 16.6 0.0 0.31 10.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|282164713|ref|YP_003357098.1| - 0.0059 16.7 0.3 0.25 11.4 0.0 2.8 3 0 0 3 3 2 1 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|282164713|ref|YP_003357098.1| - 0.0059 15.9 0.0 1.5 8.1 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin ATPase PF06745.13 gi|282164713|ref|YP_003357098.1| - 0.0068 15.8 0.5 3.6 6.9 0.0 2.6 3 0 0 3 3 2 1 KaiC NTPase_1 PF03266.15 gi|282164713|ref|YP_003357098.1| - 0.0094 15.9 1.0 1.7 8.5 0.0 2.9 3 0 0 3 3 2 1 NTPase Anti-TRAP PF15777.5 gi|282164713|ref|YP_003357098.1| - 0.018 15.0 6.7 0.31 11.0 0.9 3.4 3 0 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein Gtr1_RagA PF04670.12 gi|282164713|ref|YP_003357098.1| - 0.022 14.1 0.8 22 4.3 0.0 4.0 4 1 0 4 4 4 0 Gtr1/RagA G protein conserved region ATP_bind_1 PF03029.17 gi|282164713|ref|YP_003357098.1| - 0.034 13.9 0.1 1.7 8.4 0.0 2.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.6 gi|282164713|ref|YP_003357098.1| - 0.037 14.4 0.1 11 6.4 0.1 2.7 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|282164713|ref|YP_003357098.1| - 0.096 12.6 0.0 0.84 9.5 0.0 2.3 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|282164713|ref|YP_003357098.1| - 0.12 12.6 1.7 8 6.7 0.0 2.7 2 1 0 3 3 2 0 AAA domain RNA_helicase PF00910.22 gi|282164713|ref|YP_003357098.1| - 0.12 12.7 0.0 15 6.0 0.0 2.5 2 0 0 2 2 2 0 RNA helicase zf-TFIIB PF13453.6 gi|282164713|ref|YP_003357098.1| - 0.13 11.6 9.3 2.7 7.4 0.0 3.6 3 0 0 3 3 3 0 Transcription factor zinc-finger Elf1 PF05129.13 gi|282164713|ref|YP_003357098.1| - 0.13 12.3 1.2 0.3 11.1 0.2 2.0 2 0 0 2 2 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.10 gi|282164713|ref|YP_003357098.1| - 0.14 12.3 7.4 21 5.3 2.1 3.8 3 1 0 3 3 3 0 Zinc ribbon domain RNA12 PF10443.9 gi|282164713|ref|YP_003357098.1| - 0.18 10.5 0.1 9.2 4.9 0.0 2.4 3 0 0 3 3 3 0 RNA12 protein BCA_ABC_TP_C PF12399.8 gi|282164713|ref|YP_003357098.1| - 0.2 11.6 2.4 0.22 11.5 0.3 2.2 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter CGGC PF08821.11 gi|282164713|ref|YP_003357098.1| - 0.62 10.3 2.0 14 6.0 0.0 3.0 2 1 1 3 3 3 0 CGGC domain Lar_restr_allev PF14354.6 gi|282164713|ref|YP_003357098.1| - 2.1 8.8 3.8 1.5 9.2 0.3 2.5 3 0 0 3 3 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|282164713|ref|YP_003357098.1| - 2.4 8.2 5.6 13 5.8 0.3 3.3 3 0 0 3 3 3 0 Transposase zinc-ribbon domain TackOD1 PF18551.1 gi|282164713|ref|YP_003357098.1| - 2.5 7.7 4.1 12 5.5 0.0 3.0 3 1 0 3 3 3 0 Thaumarchaeal output domain 1 zf_Rg PF17915.1 gi|282164713|ref|YP_003357098.1| - 6.5 6.2 6.9 19 4.8 0.0 3.5 3 0 0 3 3 3 0 Reverse gyrase zinc finger PadR PF03551.14 gi|282164714|ref|YP_003357099.1| - 1.1e-13 51.0 0.0 1.7e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|282164714|ref|YP_003357099.1| - 3.3e-05 24.0 0.0 5.6e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|282164714|ref|YP_003357099.1| - 0.00012 21.9 0.2 0.0016 18.2 0.2 2.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|282164714|ref|YP_003357099.1| - 0.034 14.6 0.0 0.064 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Vir_act_alpha_C PF10400.9 gi|282164714|ref|YP_003357099.1| - 0.043 14.5 0.0 0.093 13.4 0.0 1.6 1 0 0 1 1 1 0 Virulence activator alpha C-term HTH_IclR PF09339.10 gi|282164714|ref|YP_003357099.1| - 0.05 13.4 0.1 0.17 11.7 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain FUR PF01475.19 gi|282164714|ref|YP_003357099.1| - 0.08 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family DUF3116 PF11313.8 gi|282164714|ref|YP_003357099.1| - 0.091 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) DUF1405 PF07187.11 gi|282164717|ref|YP_003357102.1| - 2.4e-29 102.4 23.1 3.4e-29 101.9 23.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) Hexapep PF00132.24 gi|282164718|ref|YP_003357103.1| - 1.4e-12 46.8 8.7 4.3e-10 38.9 4.3 2.6 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|282164718|ref|YP_003357103.1| - 2.8e-11 43.0 8.9 7.7e-09 35.2 4.8 2.8 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase OTCace PF00185.24 gi|282164719|ref|YP_003357104.1| - 1.5e-56 190.8 0.0 2.4e-56 190.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|282164719|ref|YP_003357104.1| - 1.4e-52 177.7 0.0 2.3e-52 176.9 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PALP PF00291.25 gi|282164719|ref|YP_003357104.1| - 0.062 12.7 0.0 0.093 12.1 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme HEAT_2 PF13646.6 gi|282164720|ref|YP_003357105.1| - 6.4e-23 81.0 4.7 1.8e-10 41.0 0.1 2.4 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.22 gi|282164720|ref|YP_003357105.1| - 1.9e-08 33.9 0.1 0.0081 16.3 0.0 3.6 4 0 0 4 4 4 2 HEAT repeat HEAT_PBS PF03130.16 gi|282164720|ref|YP_003357105.1| - 8.8e-05 22.8 2.4 0.9 10.4 1.7 5.1 4 3 0 4 4 4 1 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|282164720|ref|YP_003357105.1| - 0.0001 22.7 0.6 0.006 17.1 1.0 3.0 2 1 1 3 3 3 2 HEAT-like repeat Cnd1 PF12717.7 gi|282164720|ref|YP_003357105.1| - 0.00011 22.3 0.0 0.00076 19.6 0.0 2.3 1 1 0 1 1 1 1 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|282164720|ref|YP_003357105.1| - 0.00024 21.0 0.1 3.7 7.7 0.0 3.6 3 0 0 3 3 3 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|282164720|ref|YP_003357105.1| - 0.035 12.7 0.0 0.1 11.2 0.0 1.8 1 1 0 1 1 1 0 Adaptin N terminal region CLASP_N PF12348.8 gi|282164720|ref|YP_003357105.1| - 0.092 12.3 0.0 0.69 9.4 0.0 2.1 1 1 1 2 2 2 0 CLASP N terminal AhpC-TSA PF00578.21 gi|282164721|ref|YP_003357106.1| - 5.6e-36 123.2 0.0 8.7e-36 122.6 0.0 1.3 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|282164721|ref|YP_003357106.1| - 3.5e-17 62.5 0.0 4.5e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|282164721|ref|YP_003357106.1| - 2e-13 50.0 0.5 4.8e-13 48.7 0.5 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin HTH_20 PF12840.7 gi|282164724|ref|YP_003357109.1| - 7.9e-09 35.5 0.7 8.9e-08 32.1 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|282164724|ref|YP_003357109.1| - 8.8e-08 31.9 0.0 2.1e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|282164724|ref|YP_003357109.1| - 6.4e-07 28.8 0.1 6.8e-06 25.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|282164724|ref|YP_003357109.1| - 1.7e-06 27.8 0.0 3.4e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|282164724|ref|YP_003357109.1| - 8.2e-05 22.3 0.0 0.00016 21.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|282164724|ref|YP_003357109.1| - 0.00022 21.0 0.0 0.00046 20.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|282164724|ref|YP_003357109.1| - 0.00043 20.7 0.0 0.00081 19.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|282164724|ref|YP_003357109.1| - 0.00043 20.2 0.0 0.00077 19.3 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|282164724|ref|YP_003357109.1| - 0.00066 19.8 0.0 0.0012 19.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|282164724|ref|YP_003357109.1| - 0.0018 18.0 0.0 0.0045 16.7 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain B-block_TFIIIC PF04182.12 gi|282164724|ref|YP_003357109.1| - 0.002 18.3 0.0 0.0034 17.5 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_12 PF08461.10 gi|282164724|ref|YP_003357109.1| - 0.0045 16.9 0.7 1.5 8.8 0.0 2.7 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain Sigma70_r4_2 PF08281.12 gi|282164724|ref|YP_003357109.1| - 0.017 14.8 0.0 0.06 13.0 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 Rrf2 PF02082.20 gi|282164724|ref|YP_003357109.1| - 0.022 15.1 0.0 0.041 14.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR PF03551.14 gi|282164724|ref|YP_003357109.1| - 0.028 14.4 0.4 0.1 12.5 0.1 2.0 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_micro PF17007.5 gi|282164724|ref|YP_003357109.1| - 0.034 13.0 0.1 0.047 12.5 0.1 1.2 1 0 0 1 1 1 0 HTH-like HTH_11 PF08279.12 gi|282164724|ref|YP_003357109.1| - 0.094 12.7 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 HTH domain Ribosomal_S25 PF03297.15 gi|282164724|ref|YP_003357109.1| - 0.11 12.7 0.0 0.29 11.3 0.0 1.7 1 1 0 1 1 1 0 S25 ribosomal protein OPT PF03169.15 gi|282164725|ref|YP_003357110.1| - 5.4e-30 104.6 65.6 3.7e-20 72.1 30.5 2.0 2 0 0 2 2 2 2 OPT oligopeptide transporter protein Podoplanin PF05808.11 gi|282164725|ref|YP_003357110.1| - 0.42 10.7 0.1 0.42 10.7 0.1 2.0 2 0 0 2 2 2 0 Podoplanin HD_3 PF13023.6 gi|282164726|ref|YP_003357111.1| - 3.4e-55 186.5 0.2 3.9e-55 186.3 0.2 1.0 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|282164726|ref|YP_003357111.1| - 1.8e-17 63.7 0.1 2.3e-17 63.3 0.1 1.1 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|282164726|ref|YP_003357111.1| - 4.6e-06 26.8 0.7 1e-05 25.8 0.7 1.5 1 1 0 1 1 1 1 HD domain Nucleoporin2 PF04096.14 gi|282164726|ref|YP_003357111.1| - 0.021 15.0 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 Nucleoporin autopeptidase Metal_resist PF13801.6 gi|282164726|ref|YP_003357111.1| - 0.063 13.5 1.8 0.082 13.1 1.0 1.6 1 1 0 1 1 1 0 Heavy-metal resistance DEAD PF00270.29 gi|282164729|ref|YP_003357114.1| - 6.7e-50 169.3 0.0 1.2e-49 168.5 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|282164729|ref|YP_003357114.1| - 7.4e-31 106.8 0.0 4.2e-29 101.1 0.0 2.6 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|282164729|ref|YP_003357114.1| - 0.00014 21.9 0.0 0.00022 21.3 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|282164729|ref|YP_003357114.1| - 0.0037 17.0 0.0 0.0077 16.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain Helicase_RecD PF05127.14 gi|282164729|ref|YP_003357114.1| - 0.018 14.9 0.0 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 Helicase CMS1 PF14617.6 gi|282164729|ref|YP_003357114.1| - 0.028 13.7 0.1 0.071 12.4 0.1 1.6 2 0 0 2 2 2 0 U3-containing 90S pre-ribosomal complex subunit SQHop_cyclase_C PF13243.6 gi|282164730|ref|YP_003357115.1| - 2.3e-07 30.3 0.1 0.00054 19.2 0.0 2.7 1 1 1 2 2 2 2 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 gi|282164730|ref|YP_003357115.1| - 0.053 13.3 0.2 0.94 9.3 0.0 3.0 3 0 0 3 3 3 0 Prenyltransferase and squalene oxidase repeat Fis1_TPR_N PF14852.6 gi|282164730|ref|YP_003357115.1| - 0.059 13.0 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat Beta_helix PF13229.6 gi|282164731|ref|YP_003357116.1| - 1e-25 90.4 52.0 1.9e-14 53.8 13.4 3.2 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|282164731|ref|YP_003357116.1| - 1.3e-19 70.4 29.2 3.7e-15 55.8 9.7 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) TPR_2 PF07719.17 gi|282164731|ref|YP_003357116.1| - 6.4e-07 29.0 5.5 0.017 15.2 0.0 4.6 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282164731|ref|YP_003357116.1| - 0.00013 22.1 0.3 0.11 13.0 0.0 4.2 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282164731|ref|YP_003357116.1| - 0.00036 21.1 2.3 0.52 11.3 0.1 4.3 1 1 3 4 4 4 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|282164731|ref|YP_003357116.1| - 0.0026 17.4 1.0 3.7 7.3 0.0 4.0 4 0 0 4 4 4 1 TPR repeat TPR_19 PF14559.6 gi|282164731|ref|YP_003357116.1| - 0.0029 18.1 0.6 0.16 12.5 0.1 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282164731|ref|YP_003357116.1| - 0.015 15.4 4.2 0.92 9.9 0.1 4.1 2 1 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282164731|ref|YP_003357116.1| - 0.017 14.9 2.0 0.73 9.8 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat Pectate_lyase_3 PF12708.7 gi|282164731|ref|YP_003357116.1| - 0.022 14.6 14.6 0.082 12.7 6.3 2.6 2 1 0 2 2 2 0 Pectate lyase superfamily protein TPR_9 PF13371.6 gi|282164731|ref|YP_003357116.1| - 0.025 14.7 0.5 0.14 12.3 0.1 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282164731|ref|YP_003357116.1| - 0.027 14.8 0.5 0.078 13.3 0.1 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282164731|ref|YP_003357116.1| - 0.36 10.8 2.8 60 3.7 0.3 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282164731|ref|YP_003357116.1| - 0.65 10.7 2.6 25 5.6 0.3 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF123 PF01986.16 gi|282164732|ref|YP_003357117.1| - 1.3e-26 92.9 0.0 1.7e-26 92.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 Peptidase_M54 PF07998.11 gi|282164733|ref|YP_003357118.1| - 2.3e-16 60.4 3.9 8.3e-16 58.5 3.9 1.9 1 1 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|282164733|ref|YP_003357118.1| - 0.0026 17.6 0.1 0.0029 17.4 0.1 1.3 1 0 0 1 1 1 1 Matrixin Reprolysin PF01421.19 gi|282164733|ref|YP_003357118.1| - 0.018 14.9 0.1 0.026 14.4 0.1 1.2 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease zf-4CXXC_R1 PF10497.9 gi|282164733|ref|YP_003357118.1| - 0.028 14.6 0.2 0.041 14.1 0.2 1.2 1 0 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 Reprolysin_4 PF13583.6 gi|282164733|ref|YP_003357118.1| - 0.051 13.2 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|282164733|ref|YP_003357118.1| - 0.051 12.2 0.3 0.071 11.7 0.3 1.1 1 0 0 1 1 1 0 Putative peptidase family FeoB_N PF02421.18 gi|282164733|ref|YP_003357118.1| - 0.19 11.3 0.0 0.24 10.9 0.0 1.1 1 0 0 1 1 1 0 Ferrous iron transport protein B PCMT PF01135.19 gi|282164734|ref|YP_003357119.1| - 1.2e-59 201.6 0.1 1.3e-59 201.4 0.1 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|282164734|ref|YP_003357119.1| - 2.2e-05 24.3 0.0 2.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282164734|ref|YP_003357119.1| - 0.00013 22.5 0.0 0.0002 22.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|282164734|ref|YP_003357119.1| - 0.00035 19.9 0.0 0.00043 19.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.10 gi|282164734|ref|YP_003357119.1| - 0.0042 16.8 0.0 0.0058 16.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_11 PF08241.12 gi|282164734|ref|YP_003357119.1| - 0.017 15.7 0.0 0.026 15.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF5029 PF16432.5 gi|282164734|ref|YP_003357119.1| - 0.075 12.6 0.0 0.098 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5029) DUF2387 PF09526.10 gi|282164735|ref|YP_003357120.1| - 0.00093 19.3 0.4 0.0017 18.5 0.4 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) zinc_ribbon_4 PF13717.6 gi|282164735|ref|YP_003357120.1| - 0.38 10.7 1.9 4.1 7.4 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain DUF371 PF04027.13 gi|282164736|ref|YP_003357121.1| - 1.9e-48 163.8 0.1 2.1e-48 163.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) TPP_enzyme_M PF00205.22 gi|282164736|ref|YP_003357121.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Sec62 PF03839.16 gi|282164737|ref|YP_003357122.1| - 0.0026 17.3 0.1 0.0029 17.1 0.1 1.1 1 0 0 1 1 1 1 Translocation protein Sec62 DUF2207 PF09972.9 gi|282164737|ref|YP_003357122.1| - 0.0079 15.0 0.0 0.0085 14.9 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) CCDC-167 PF15188.6 gi|282164737|ref|YP_003357122.1| - 0.075 13.4 6.2 0.13 12.6 6.2 1.4 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 MAP65_ASE1 PF03999.12 gi|282164737|ref|YP_003357122.1| - 0.099 11.3 3.1 0.11 11.2 3.1 1.0 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) RPA_interact_M PF14767.6 gi|282164737|ref|YP_003357122.1| - 0.1 13.2 7.0 0.16 12.6 7.0 1.3 1 0 0 1 1 1 0 Replication protein A interacting middle Nup54_57_C PF18570.1 gi|282164737|ref|YP_003357122.1| - 1.4 8.6 8.6 8 6.2 0.2 3.2 3 0 0 3 3 3 0 NUP57/Nup54 C-terminal domain HATPase_c PF02518.26 gi|282164738|ref|YP_003357123.1| - 6.9e-20 71.6 0.0 1.2e-19 70.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|282164738|ref|YP_003357123.1| - 1.1e-15 57.6 0.0 2.1e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|282164738|ref|YP_003357123.1| - 2.3e-15 56.7 0.0 4.1e-15 55.9 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|282164738|ref|YP_003357123.1| - 1.5e-08 34.9 0.0 2.4e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|282164738|ref|YP_003357123.1| - 1.8e-06 27.8 0.0 4.7e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|282164738|ref|YP_003357123.1| - 5.1e-06 26.6 0.0 1.3e-05 25.3 0.0 1.7 1 1 0 1 1 1 1 PAS fold PAS_10 PF13596.6 gi|282164738|ref|YP_003357123.1| - 0.00081 20.0 0.0 0.0023 18.5 0.0 1.8 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|282164738|ref|YP_003357123.1| - 0.0052 16.7 0.0 0.0097 15.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Got1 PF04178.12 gi|282164738|ref|YP_003357123.1| - 0.25 11.8 4.1 0.49 10.8 4.1 1.5 1 0 0 1 1 1 0 Got1/Sft2-like family HXXEE PF13787.6 gi|282164738|ref|YP_003357123.1| - 0.5 11.2 5.6 0.79 10.5 5.6 1.4 1 0 0 1 1 1 0 Protein of unknown function with HXXEE motif DUF4118 PF13493.6 gi|282164738|ref|YP_003357123.1| - 5.2 6.9 12.3 16 5.3 12.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4118) Peptidase_S8 PF00082.22 gi|282164739|ref|YP_003357124.1| - 1.2e-61 208.6 16.5 3.5e-61 207.1 16.5 1.8 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.16 gi|282164739|ref|YP_003357124.1| - 3e-05 24.6 0.3 8.2e-05 23.2 0.3 1.8 1 0 0 1 1 1 1 Peptidase inhibitor I9 PPC PF04151.15 gi|282164739|ref|YP_003357124.1| - 0.0029 18.7 3.0 0.0029 18.7 3.0 4.5 3 1 1 4 4 4 1 Bacterial pre-peptidase C-terminal domain Peptidase_M23 PF01551.22 gi|282164739|ref|YP_003357124.1| - 0.0081 16.4 3.1 0.23 11.7 0.0 3.5 3 0 0 3 3 3 1 Peptidase family M23 GldH_lipo PF14109.6 gi|282164739|ref|YP_003357124.1| - 0.011 16.4 0.0 0.44 11.3 0.0 2.5 2 0 0 2 2 2 0 GldH lipoprotein FlgD_ig PF13860.6 gi|282164739|ref|YP_003357124.1| - 0.027 14.3 6.6 5.6 6.9 0.3 4.5 4 1 0 4 4 4 0 FlgD Ig-like domain Y_Y_Y PF07495.13 gi|282164739|ref|YP_003357124.1| - 0.031 14.2 0.9 6.6 6.8 0.0 3.4 3 0 0 3 3 3 0 Y_Y_Y domain Inhibitor_I42 PF09394.10 gi|282164739|ref|YP_003357124.1| - 2.8 8.4 8.6 0.15 12.5 0.6 3.0 3 1 0 3 3 3 0 Chagasin family peptidase inhibitor I42 CsbD PF05532.12 gi|282164740|ref|YP_003357125.1| - 4.2e-08 33.0 26.8 8.7e-07 28.7 18.5 1.4 1 1 1 2 2 2 2 CsbD-like RmlD_sub_bind PF04321.17 gi|282164741|ref|YP_003357126.1| - 6.5e-42 143.6 0.0 7.4e-42 143.4 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|282164741|ref|YP_003357126.1| - 9e-17 61.3 0.0 1.2e-16 61.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|282164741|ref|YP_003357126.1| - 4.4e-08 32.5 0.0 6.6e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|282164741|ref|YP_003357126.1| - 4.2e-06 26.1 0.1 0.00022 20.5 0.0 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|282164741|ref|YP_003357126.1| - 3.7e-05 23.3 0.0 6.5e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|282164741|ref|YP_003357126.1| - 0.0041 16.3 0.0 0.0081 15.4 0.0 1.4 1 1 0 1 1 1 1 Male sterility protein AP_endonuc_2 PF01261.24 gi|282164742|ref|YP_003357127.1| - 3e-23 82.4 0.0 4e-23 81.9 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Hydrolase_4 PF12146.8 gi|282164743|ref|YP_003357128.1| - 8.2e-09 35.1 0.7 2.3e-08 33.6 0.7 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|282164743|ref|YP_003357128.1| - 9.3e-08 32.0 0.2 1.4e-07 31.4 0.2 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|282164743|ref|YP_003357128.1| - 1e-06 29.5 1.5 2.3e-06 28.4 1.5 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 gi|282164743|ref|YP_003357128.1| - 0.015 15.1 0.1 0.03 14.1 0.1 1.5 1 0 0 1 1 1 0 Alpha/beta hydrolase family Acyl_transf_2 PF02273.15 gi|282164743|ref|YP_003357128.1| - 0.016 14.4 0.0 0.025 13.8 0.0 1.2 1 0 0 1 1 1 0 Acyl transferase DUF915 PF06028.11 gi|282164743|ref|YP_003357128.1| - 0.073 12.4 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) CarboxypepD_reg PF13620.6 gi|282164744|ref|YP_003357129.1| - 9.7e-09 35.4 1.3 2.2e-08 34.2 0.0 1.9 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|282164744|ref|YP_003357129.1| - 3.3e-06 27.0 0.0 1e-05 25.4 0.0 1.8 1 1 0 1 1 1 1 CarboxypepD_reg-like domain SpaA PF17802.1 gi|282164744|ref|YP_003357129.1| - 0.00065 20.0 1.0 0.0011 19.3 1.0 1.6 1 1 0 1 1 1 1 Prealbumin-like fold domain SdrD_B PF17210.3 gi|282164744|ref|YP_003357129.1| - 0.0032 17.7 0.0 0.0049 17.1 0.0 1.4 1 0 0 1 1 1 1 SdrD B-like domain Dioxygenase_C PF00775.21 gi|282164744|ref|YP_003357129.1| - 0.011 15.1 0.1 0.027 13.9 0.1 1.5 1 1 0 1 1 1 0 Dioxygenase Ribosomal_60s PF00428.19 gi|282164745|ref|YP_003357130.1| - 2.2e-19 69.8 18.7 2.7e-19 69.6 18.7 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|282164745|ref|YP_003357130.1| - 0.0019 18.4 3.0 0.0026 17.9 3.0 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain CAP_N PF01213.19 gi|282164745|ref|YP_003357130.1| - 0.025 14.1 1.5 0.025 14.0 1.5 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Shadoo PF14999.6 gi|282164745|ref|YP_003357130.1| - 0.25 11.4 6.5 0.32 11.1 6.5 1.2 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective Ribosomal_L10 PF00466.20 gi|282164746|ref|YP_003357131.1| - 2.2e-22 79.1 0.3 6.3e-22 77.6 0.0 1.9 2 0 0 2 2 2 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|282164746|ref|YP_003357131.1| - 2.2e-21 75.6 0.1 4.6e-21 74.6 0.1 1.6 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L1 PF00687.21 gi|282164747|ref|YP_003357132.1| - 5.8e-45 153.5 0.3 7e-45 153.3 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family YfkD PF14167.6 gi|282164747|ref|YP_003357132.1| - 0.091 11.9 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 YfkD-like protein Ribosomal_L11_N PF03946.14 gi|282164748|ref|YP_003357133.1| - 1.2e-25 89.1 0.4 2.7e-25 88.0 0.4 1.6 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|282164748|ref|YP_003357133.1| - 1e-17 64.4 0.6 1.9e-17 63.5 0.6 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain HTH_24 PF13412.6 gi|282164750|ref|YP_003357135.1| - 0.012 15.2 0.0 0.031 13.8 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|282164750|ref|YP_003357135.1| - 0.026 14.5 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF1441 PF07278.11 gi|282164750|ref|YP_003357135.1| - 0.036 14.0 0.0 0.069 13.1 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1441) HTH_Mga PF08280.11 gi|282164750|ref|YP_003357135.1| - 0.044 13.8 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF3467 PF11950.8 gi|282164750|ref|YP_003357135.1| - 0.068 13.4 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3467) HTH_IclR PF09339.10 gi|282164750|ref|YP_003357135.1| - 0.17 11.7 0.0 0.26 11.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain RHH_6 PF16762.5 gi|282164750|ref|YP_003357135.1| - 0.17 12.5 0.0 1.4 9.6 0.0 2.5 3 1 0 3 3 3 0 Ribbon-helix-helix domain PLDc_2 PF13091.6 gi|282164752|ref|YP_003357137.1| - 2e-09 37.4 0.5 4.6e-09 36.3 0.5 1.5 1 1 0 1 1 1 1 PLD-like domain NMD3 PF04981.13 gi|282164752|ref|YP_003357137.1| - 0.0083 15.6 2.2 0.029 13.8 0.6 2.3 2 0 0 2 2 2 1 NMD3 family DUF1232 PF06803.12 gi|282164753|ref|YP_003357138.1| - 2e-12 46.7 9.0 4.2e-12 45.7 9.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) HTH_24 PF13412.6 gi|282164754|ref|YP_003357139.1| - 4.2e-06 26.2 0.1 7.8e-06 25.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Phage_rep_O PF04492.13 gi|282164754|ref|YP_003357139.1| - 0.00072 20.1 0.2 0.037 14.6 0.1 2.2 1 1 1 2 2 2 1 Bacteriophage replication protein O HTH_11 PF08279.12 gi|282164754|ref|YP_003357139.1| - 0.0089 16.0 0.1 0.022 14.7 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|282164754|ref|YP_003357139.1| - 0.01 15.8 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|282164754|ref|YP_003357139.1| - 0.019 14.7 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Lipoprotein_Ltp PF07553.11 gi|282164754|ref|YP_003357139.1| - 0.026 14.8 0.1 0.1 12.9 0.0 2.1 2 0 0 2 2 2 0 Host cell surface-exposed lipoprotein HTH_AsnC-type PF13404.6 gi|282164754|ref|YP_003357139.1| - 0.041 13.7 0.0 0.087 12.7 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain YolD PF08863.10 gi|282164754|ref|YP_003357139.1| - 0.043 13.9 1.0 0.14 12.2 0.2 2.0 2 0 0 2 2 2 0 YolD-like protein HTH_5 PF01022.20 gi|282164754|ref|YP_003357139.1| - 0.057 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|282164754|ref|YP_003357139.1| - 0.16 11.9 0.0 0.32 10.9 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DJ-1_PfpI PF01965.24 gi|282164755|ref|YP_003357140.1| - 1.2e-28 100.0 0.0 1.6e-28 99.6 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|282164755|ref|YP_003357140.1| - 0.0012 18.6 0.0 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 ThiJ/PfpI family-like GATase_3 PF07685.14 gi|282164755|ref|YP_003357140.1| - 0.02 14.5 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF3450 PF11932.8 gi|282164755|ref|YP_003357140.1| - 0.2 11.0 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF4258 PF14076.6 gi|282164756|ref|YP_003357141.1| - 5.3e-07 29.9 0.1 6.4e-07 29.7 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) MazE_antitoxin PF04014.18 gi|282164757|ref|YP_003357142.1| - 6.5e-12 45.1 1.1 9.2e-12 44.6 1.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin zf-TFIIB PF13453.6 gi|282164757|ref|YP_003357142.1| - 2.2e-05 23.7 1.9 4.1e-05 22.8 1.9 1.5 1 1 0 1 1 1 1 Transcription factor zinc-finger YdjO PF14169.6 gi|282164757|ref|YP_003357142.1| - 0.0013 18.4 2.9 0.014 15.2 0.9 2.3 2 0 0 2 2 2 1 Cold-inducible protein YdjO DZR PF12773.7 gi|282164757|ref|YP_003357142.1| - 0.0049 16.9 0.4 0.0069 16.4 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-C2H2_9 PF16293.5 gi|282164757|ref|YP_003357142.1| - 0.046 13.6 0.1 2.8 7.9 0.1 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger (1 copy) Nop10p PF04135.12 gi|282164757|ref|YP_003357142.1| - 0.087 12.9 0.5 0.17 11.9 0.1 1.6 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family SymE_toxin PF08845.10 gi|282164757|ref|YP_003357142.1| - 0.12 12.4 0.2 0.29 11.2 0.1 1.6 2 0 0 2 2 2 0 Toxin SymE, type I toxin-antitoxin system Rad50_zn_hook PF04423.14 gi|282164757|ref|YP_003357142.1| - 0.13 12.2 2.1 2.3 8.1 0.4 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif zinc-ribbons_6 PF07191.12 gi|282164757|ref|YP_003357142.1| - 0.2 11.7 2.2 0.68 10.0 2.2 1.8 1 1 0 1 1 1 0 zinc-ribbons Auto_anti-p27 PF06677.12 gi|282164757|ref|YP_003357142.1| - 0.41 10.8 4.4 4.2 7.6 4.6 2.1 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ni_hydr_CYTB PF01292.20 gi|282164759|ref|YP_003357144.1| - 0.00029 20.5 2.6 0.00036 20.2 2.6 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.6 gi|282164759|ref|YP_003357144.1| - 0.012 16.2 7.9 0.015 15.8 7.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4405) YobH PF13996.6 gi|282164759|ref|YP_003357144.1| - 0.25 11.4 3.1 0.1 12.6 0.8 1.5 1 1 1 2 2 2 0 YobH-like protein Oxidored_molyb PF00174.19 gi|282164760|ref|YP_003357145.1| - 1.7e-31 109.2 0.0 2.4e-31 108.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Arabinose_Iso_C PF11762.8 gi|282164760|ref|YP_003357145.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 L-arabinose isomerase C-terminal domain STT3 PF02516.14 gi|282164763|ref|YP_003357148.1| - 0.016 14.2 0.1 0.027 13.4 0.0 1.3 1 1 0 1 1 1 0 Oligosaccharyl transferase STT3 subunit Anti-TRAP PF15777.5 gi|282164764|ref|YP_003357149.1| - 0.021 14.8 1.8 3.8 7.6 0.1 2.3 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Elf1 PF05129.13 gi|282164764|ref|YP_003357149.1| - 0.032 14.3 0.7 0.032 14.3 0.7 2.4 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.10 gi|282164764|ref|YP_003357149.1| - 0.05 13.7 7.9 1.7 8.8 0.3 3.1 2 1 2 4 4 4 0 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|282164764|ref|YP_003357149.1| - 0.075 13.0 11.3 0.36 10.8 1.5 2.5 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 Cytochrom_C PF00034.21 gi|282164764|ref|YP_003357149.1| - 0.097 13.8 4.4 0.25 12.5 4.4 1.6 1 1 0 1 1 1 0 Cytochrome c TF_Zn_Ribbon PF08271.12 gi|282164764|ref|YP_003357149.1| - 0.098 12.2 6.7 1.2 8.8 1.2 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|282164764|ref|YP_003357149.1| - 0.1 12.6 6.2 1.9 8.5 0.8 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|282164764|ref|YP_003357149.1| - 0.18 11.9 10.6 3.9 7.6 10.3 2.7 1 1 1 2 2 2 0 Double zinc ribbon Cytochrom_c3_2 PF14537.6 gi|282164764|ref|YP_003357149.1| - 0.21 12.1 8.0 0.49 10.9 8.0 1.7 1 1 0 1 1 1 0 Cytochrome c3 NMD3 PF04981.13 gi|282164764|ref|YP_003357149.1| - 0.24 10.8 9.0 0.3 10.5 1.5 2.1 1 1 1 2 2 2 0 NMD3 family Zn_Tnp_IS1595 PF12760.7 gi|282164764|ref|YP_003357149.1| - 0.27 11.3 12.8 3.3 7.8 0.1 3.7 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Cytochrom_CIII PF02085.16 gi|282164764|ref|YP_003357149.1| - 0.61 10.5 8.0 10 6.5 8.0 2.1 1 1 0 1 1 1 0 Class III cytochrome C family zinc_ribbon_2 PF13240.6 gi|282164764|ref|YP_003357149.1| - 0.94 9.3 0.1 0.94 9.3 0.1 3.4 4 0 0 4 4 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|282164764|ref|YP_003357149.1| - 1.1 9.3 13.6 0.7 9.9 2.7 3.7 3 1 0 3 3 3 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|282164764|ref|YP_003357149.1| - 1.3 9.2 10.5 2.5 8.4 0.1 3.2 3 1 0 3 3 3 0 C4-type zinc ribbon domain Cytochrome_C7 PF14522.6 gi|282164764|ref|YP_003357149.1| - 1.7 8.7 10.3 94 3.1 10.3 2.3 1 1 0 1 1 1 0 Cytochrome c7 and related cytochrome c DUF2719 PF10891.8 gi|282164764|ref|YP_003357149.1| - 1.9 8.5 7.4 0.24 11.3 0.7 2.5 2 2 1 3 3 3 0 Protein of unknown function (DUF2719) DNA_RNApol_7kD PF03604.13 gi|282164764|ref|YP_003357149.1| - 3.7 7.3 10.5 0.78 9.5 1.5 3.0 2 2 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF553 PF04473.12 gi|282164765|ref|YP_003357150.1| - 0.0058 16.2 0.0 0.0093 15.5 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.19 gi|282164765|ref|YP_003357150.1| - 0.077 13.5 0.0 0.23 11.9 0.0 1.8 2 0 0 2 2 2 0 Transglutaminase-like superfamily eIF-1a PF01176.19 gi|282164767|ref|YP_003357152.1| - 2.7e-21 75.1 0.4 3.2e-21 74.9 0.4 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 gi|282164767|ref|YP_003357152.1| - 0.0054 16.4 0.0 0.0073 16.0 0.0 1.3 1 0 0 1 1 1 1 RsgA N-terminal domain zinc_ribbon_6 PF14599.6 gi|282164768|ref|YP_003357153.1| - 0.017 15.1 5.6 1.4 9.0 6.9 2.0 1 1 1 2 2 2 0 Zinc-ribbon PEMT PF04191.13 gi|282164769|ref|YP_003357154.1| - 2.1e-10 40.9 1.7 2.8e-10 40.5 0.2 2.0 2 0 0 2 2 2 1 Phospholipid methyltransferase ICMT PF04140.14 gi|282164769|ref|YP_003357154.1| - 9.4e-09 35.6 0.3 2.5e-08 34.2 0.0 2.0 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family NnrU PF07298.11 gi|282164769|ref|YP_003357154.1| - 3.2e-05 23.5 0.7 3.2e-05 23.5 0.7 2.0 1 1 1 2 2 2 1 NnrU protein DUF1295 PF06966.12 gi|282164769|ref|YP_003357154.1| - 3.4e-05 23.5 1.5 5.7e-05 22.7 1.5 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1295) ERG4_ERG24 PF01222.17 gi|282164769|ref|YP_003357154.1| - 0.00014 20.7 0.0 0.00027 19.8 0.0 1.4 1 0 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family Steroid_dh PF02544.16 gi|282164769|ref|YP_003357154.1| - 0.002 18.1 0.0 0.0039 17.2 0.0 1.5 1 0 0 1 1 1 1 3-oxo-5-alpha-steroid 4-dehydrogenase DUF2892 PF11127.8 gi|282164770|ref|YP_003357155.1| - 9.9e-11 41.5 2.8 1.2e-10 41.3 2.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Ferlin_C PF16165.5 gi|282164770|ref|YP_003357155.1| - 0.21 11.5 1.5 0.24 11.3 1.5 1.1 1 0 0 1 1 1 0 Ferlin C-terminus DUF373 PF04123.13 gi|282164770|ref|YP_003357155.1| - 0.4 10.1 3.3 0.45 9.9 3.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF2207 PF09972.9 gi|282164770|ref|YP_003357155.1| - 0.54 9.0 2.6 0.54 9.0 2.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF1059 PF06348.11 gi|282164771|ref|YP_003357156.1| - 3.6e-10 39.9 0.5 4.1e-10 39.7 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) PTRF_SDPR PF15237.6 gi|282164775|ref|YP_003357160.1| - 0.029 14.0 0.0 0.05 13.2 0.0 1.3 1 1 0 1 1 1 0 PTRF/SDPR family Ferritin PF00210.24 gi|282164779|ref|YP_003357164.1| - 1.1e-30 106.4 0.6 1.2e-30 106.3 0.6 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|282164779|ref|YP_003357164.1| - 4.3e-05 23.9 2.3 0.0001 22.7 2.2 1.8 1 1 0 1 1 1 1 Rubrerythrin RBFA PF02033.18 gi|282164779|ref|YP_003357164.1| - 0.02 15.3 0.3 0.11 13.0 0.1 1.9 2 0 0 2 2 2 0 Ribosome-binding factor A DYW_deaminase PF14432.6 gi|282164779|ref|YP_003357164.1| - 0.038 13.9 0.0 0.067 13.1 0.0 1.4 1 0 0 1 1 1 0 DYW family of nucleic acid deaminases MIP PF00230.20 gi|282164780|ref|YP_003357165.1| - 2.6e-52 177.8 19.5 2.9e-52 177.6 19.5 1.0 1 0 0 1 1 1 1 Major intrinsic protein DUF2070 PF09843.9 gi|282164780|ref|YP_003357165.1| - 1.2 7.3 9.8 1.6 7.0 9.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) FKBP_C PF00254.28 gi|282164781|ref|YP_003357166.1| - 1.6e-21 76.4 0.0 3e-21 75.5 0.0 1.5 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Abhydrolase_1 PF00561.20 gi|282164783|ref|YP_003357168.1| - 3.5e-11 43.2 0.0 4.3e-09 36.4 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|282164783|ref|YP_003357168.1| - 4.2e-09 37.3 0.0 5.3e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|282164783|ref|YP_003357168.1| - 1.3e-08 34.4 0.0 2.4e-08 33.5 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 LIDHydrolase PF10230.9 gi|282164783|ref|YP_003357168.1| - 0.011 15.3 0.0 0.016 14.8 0.0 1.1 1 0 0 1 1 1 0 Lipid-droplet associated hydrolase Abhydrolase_3 PF07859.13 gi|282164783|ref|YP_003357168.1| - 0.016 15.1 0.0 0.029 14.2 0.0 1.4 2 0 0 2 2 2 0 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|282164783|ref|YP_003357168.1| - 0.042 13.3 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 0 Prolyl oligopeptidase family Palm_thioest PF02089.15 gi|282164783|ref|YP_003357168.1| - 0.063 13.1 0.0 0.079 12.8 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase Abhydrolase_4 PF08386.10 gi|282164783|ref|YP_003357168.1| - 0.093 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein DUF2920 PF11144.8 gi|282164783|ref|YP_003357168.1| - 0.11 11.7 0.1 0.16 11.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) zf-ribbon_3 PF13248.6 gi|282164784|ref|YP_003357169.1| - 3.3e-05 23.1 3.6 4.8e-05 22.6 3.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|282164784|ref|YP_003357169.1| - 0.0039 17.1 2.9 0.0068 16.3 2.9 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|282164784|ref|YP_003357169.1| - 0.0071 16.0 2.3 0.41 10.4 0.1 2.2 1 1 1 2 2 2 2 zinc-ribbon domain TackOD1 PF18551.1 gi|282164784|ref|YP_003357169.1| - 0.0078 15.9 0.0 0.0088 15.7 0.0 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 DZR PF12773.7 gi|282164784|ref|YP_003357169.1| - 0.016 15.2 0.1 0.023 14.7 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-CHCC PF10276.9 gi|282164784|ref|YP_003357169.1| - 0.029 14.4 2.1 0.068 13.2 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger domain zinc_ribbon_15 PF17032.5 gi|282164784|ref|YP_003357169.1| - 0.055 14.2 0.0 0.077 13.8 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon family zf-RING_7 PF02591.15 gi|282164784|ref|YP_003357169.1| - 0.22 11.8 4.0 1.7 8.9 0.1 2.3 1 1 1 2 2 2 0 C4-type zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|282164784|ref|YP_003357169.1| - 0.31 11.0 2.1 5.6 7.0 0.0 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|282164784|ref|YP_003357169.1| - 0.4 10.8 3.5 0.63 10.2 3.5 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-CSL PF05207.13 gi|282164784|ref|YP_003357169.1| - 0.73 9.6 2.7 0.78 9.5 0.1 2.1 1 1 1 2 2 2 0 CSL zinc finger TF_Zn_Ribbon PF08271.12 gi|282164784|ref|YP_003357169.1| - 1.4 8.5 4.8 3.4 7.3 4.7 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C2HC_2 PF13913.6 gi|282164784|ref|YP_003357169.1| - 6.6 6.8 6.9 1.7 8.6 0.4 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type P19Arf_N PF07392.12 gi|282164785|ref|YP_003357170.1| - 0.078 13.4 0.4 7.1 7.2 0.0 3.0 2 1 1 3 3 3 0 Cyclin-dependent kinase inhibitor 2a p19Arf N-terminus DUF1659 PF07872.11 gi|282164785|ref|YP_003357170.1| - 0.08 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1659) CarboxypepD_reg PF13620.6 gi|282164786|ref|YP_003357171.1| - 2.5e-09 37.3 6.9 7.6e-09 35.7 0.9 3.6 3 1 1 4 4 4 1 Carboxypeptidase regulatory-like domain Dioxygenase_C PF00775.21 gi|282164786|ref|YP_003357171.1| - 3.1e-06 26.8 0.2 0.00038 20.0 0.2 2.2 1 1 0 1 1 1 1 Dioxygenase CarbopepD_reg_2 PF13715.6 gi|282164786|ref|YP_003357171.1| - 0.0045 16.9 0.0 0.049 13.6 0.0 2.6 2 1 0 2 2 2 1 CarboxypepD_reg-like domain SdrD_B PF17210.3 gi|282164786|ref|YP_003357171.1| - 0.11 12.8 0.0 0.32 11.2 0.0 1.8 2 1 0 2 2 2 0 SdrD B-like domain TTR-52 PF01060.23 gi|282164786|ref|YP_003357171.1| - 0.17 12.6 0.0 0.32 11.7 0.0 1.4 1 0 0 1 1 1 0 Transthyretin-like family DZR PF12773.7 gi|282164787|ref|YP_003357172.1| - 0.001 19.1 0.1 0.0014 18.6 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|282164787|ref|YP_003357172.1| - 0.014 15.0 0.7 0.023 14.4 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-P11 PF03854.14 gi|282164787|ref|YP_003357172.1| - 0.035 13.8 0.3 0.056 13.1 0.3 1.3 1 0 0 1 1 1 0 P-11 zinc finger zinc_ribbon_15 PF17032.5 gi|282164787|ref|YP_003357172.1| - 0.056 14.2 0.0 0.085 13.6 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|282164787|ref|YP_003357172.1| - 0.057 12.9 1.3 0.085 12.3 1.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|282164787|ref|YP_003357172.1| - 0.059 13.4 0.0 0.083 12.9 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rad50_zn_hook PF04423.14 gi|282164787|ref|YP_003357172.1| - 0.086 12.7 1.9 0.2 11.5 0.2 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-NADH-PPase PF09297.11 gi|282164787|ref|YP_003357172.1| - 1.3 8.7 3.9 0.8 9.4 0.5 2.0 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ferritin PF00210.24 gi|282164788|ref|YP_003357173.1| - 5.1e-11 42.7 0.1 6.9e-11 42.3 0.1 1.2 1 0 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.6 gi|282164788|ref|YP_003357173.1| - 1e-05 25.8 0.0 1.1e-05 25.7 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|282164788|ref|YP_003357173.1| - 1e-05 26.0 0.1 2.9e-05 24.5 0.1 1.6 1 1 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|282164788|ref|YP_003357173.1| - 2.6e-05 24.1 0.1 0.0083 15.9 0.1 2.1 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 Ferritin-like PF12902.7 gi|282164788|ref|YP_003357173.1| - 0.00038 20.4 0.0 0.00039 20.4 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like DUF2383 PF09537.10 gi|282164788|ref|YP_003357173.1| - 0.033 14.5 0.1 0.083 13.2 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) Mn_catalase PF05067.12 gi|282164788|ref|YP_003357173.1| - 0.12 11.3 0.1 0.29 10.1 0.0 1.6 2 0 0 2 2 2 0 Manganese containing catalase DUF308 PF03729.13 gi|282164789|ref|YP_003357174.1| - 8.3e-20 70.9 56.9 6.4e-11 42.4 13.3 3.2 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF1059 PF06348.11 gi|282164791|ref|YP_003357176.1| - 8.5e-09 35.5 0.1 9.3e-09 35.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) Aldo_ket_red PF00248.21 gi|282164794|ref|YP_003357179.1| - 2.8e-43 148.2 0.0 7.6e-42 143.5 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|282164794|ref|YP_003357179.1| - 7.6e-09 36.0 12.4 1.6e-08 34.9 12.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282164794|ref|YP_003357179.1| - 2.1e-06 27.8 13.0 3.8e-06 27.0 13.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282164794|ref|YP_003357179.1| - 0.0024 17.6 3.7 0.0024 17.6 3.7 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282164794|ref|YP_003357179.1| - 0.0037 17.3 13.9 0.0071 16.4 13.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282164794|ref|YP_003357179.1| - 0.0071 16.5 6.5 0.32 11.2 0.7 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282164794|ref|YP_003357179.1| - 0.019 15.5 14.9 0.092 13.4 14.9 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|282164794|ref|YP_003357179.1| - 0.04 14.8 4.9 5.5 7.9 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282164794|ref|YP_003357179.1| - 0.087 13.3 14.8 0.25 11.8 14.8 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|282164794|ref|YP_003357179.1| - 1.9 8.3 10.5 0.22 11.3 1.4 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DNA_primase_S PF01896.19 gi|282164795|ref|YP_003357180.1| - 2e-05 24.7 0.0 0.00031 20.8 0.0 2.5 2 2 1 3 3 3 1 DNA primase small subunit DNA_ligase_A_M PF01068.21 gi|282164796|ref|YP_003357181.1| - 4e-31 108.3 0.0 5.7e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.15 gi|282164796|ref|YP_003357181.1| - 3.8e-27 94.8 0.0 7.4e-27 93.8 0.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.19 gi|282164796|ref|YP_003357181.1| - 9e-05 22.4 0.2 2.7 7.8 0.0 3.1 3 0 0 3 3 3 3 mRNA capping enzyme, catalytic domain LigD_N PF13298.6 gi|282164797|ref|YP_003357182.1| - 7.8e-40 135.4 0.0 1.2e-39 134.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) DUF3006 PF11213.8 gi|282164798|ref|YP_003357183.1| - 9.2e-19 67.4 0.2 1.1e-18 67.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) CHS5_N PF16892.5 gi|282164798|ref|YP_003357183.1| - 0.00011 22.1 0.0 0.00015 21.6 0.0 1.3 1 0 0 1 1 1 1 Chitin biosynthesis protein CHS5 N-terminus S1_2 PF13509.6 gi|282164798|ref|YP_003357183.1| - 0.024 14.7 0.0 0.031 14.4 0.0 1.2 1 0 0 1 1 1 0 S1 domain FYVE_2 PF02318.16 gi|282164798|ref|YP_003357183.1| - 0.12 12.6 0.1 0.15 12.3 0.1 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Lactamase_B PF00753.27 gi|282164799|ref|YP_003357184.1| - 4.9e-14 52.8 0.1 2.9e-13 50.3 0.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|282164799|ref|YP_003357184.1| - 5.8e-08 32.5 0.0 9.3e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ATPase PF06745.13 gi|282164800|ref|YP_003357185.1| - 1.1e-109 365.2 3.3 4.5e-69 232.3 0.0 2.6 3 0 0 3 3 3 2 KaiC AAA_25 PF13481.6 gi|282164800|ref|YP_003357185.1| - 6.8e-18 64.9 0.3 3.1e-08 33.4 0.0 3.1 3 0 0 3 3 3 2 AAA domain DnaB_C PF03796.15 gi|282164800|ref|YP_003357185.1| - 1.5e-10 40.9 0.0 0.00022 20.6 0.0 2.4 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|282164800|ref|YP_003357185.1| - 5.2e-08 32.0 0.7 0.00041 19.1 0.1 3.3 3 1 0 3 3 3 2 GvpD gas vesicle protein RecA PF00154.21 gi|282164800|ref|YP_003357185.1| - 2.4e-07 30.5 0.2 0.007 15.9 0.0 2.7 3 0 0 3 3 3 2 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|282164800|ref|YP_003357185.1| - 2.5e-06 27.4 0.1 0.0034 17.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|282164800|ref|YP_003357185.1| - 5.4e-06 26.2 0.0 0.0016 18.2 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|282164800|ref|YP_003357185.1| - 8e-06 26.3 0.0 0.0067 16.8 0.0 2.6 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|282164800|ref|YP_003357185.1| - 1.6e-05 24.9 0.0 0.04 13.8 0.0 2.5 2 1 0 2 2 2 2 NACHT domain Rad51 PF08423.11 gi|282164800|ref|YP_003357185.1| - 3.1e-05 23.4 0.0 0.013 14.8 0.0 2.3 2 0 0 2 2 2 2 Rad51 CobU PF02283.16 gi|282164800|ref|YP_003357185.1| - 3.3e-05 23.5 0.1 0.1 12.2 0.0 2.5 2 0 0 2 2 2 2 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_22 PF13401.6 gi|282164800|ref|YP_003357185.1| - 9.5e-05 22.7 0.2 0.021 15.1 0.0 2.7 2 1 0 2 2 2 1 AAA domain MEDS PF14417.6 gi|282164800|ref|YP_003357185.1| - 0.00012 21.9 0.0 0.032 14.0 0.0 2.7 2 1 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_19 PF13245.6 gi|282164800|ref|YP_003357185.1| - 0.00025 21.4 0.0 0.64 10.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|282164800|ref|YP_003357185.1| - 0.00047 19.9 0.0 0.097 12.4 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_14 PF13173.6 gi|282164800|ref|YP_003357185.1| - 0.00052 20.0 0.0 0.53 10.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|282164800|ref|YP_003357185.1| - 0.00087 19.1 0.0 0.22 11.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|282164800|ref|YP_003357185.1| - 0.0021 17.8 1.5 1 9.2 0.5 2.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|282164800|ref|YP_003357185.1| - 0.0023 17.5 0.1 2.4 7.6 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region DUF2075 PF09848.9 gi|282164800|ref|YP_003357185.1| - 0.0057 15.9 2.6 1.5 8.0 0.0 3.0 3 0 0 3 3 3 2 Uncharacterized conserved protein (DUF2075) FtsK_SpoIIIE PF01580.18 gi|282164800|ref|YP_003357185.1| - 0.0078 15.6 0.7 0.91 8.8 0.0 2.9 3 0 0 3 3 3 1 FtsK/SpoIIIE family T2SSE PF00437.20 gi|282164800|ref|YP_003357185.1| - 0.011 14.8 0.0 3.6 6.6 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|282164800|ref|YP_003357185.1| - 0.014 16.0 0.5 0.41 11.2 0.0 3.0 3 0 0 3 3 3 0 AAA domain TrwB_AAD_bind PF10412.9 gi|282164800|ref|YP_003357185.1| - 0.023 13.6 0.1 0.72 8.7 0.0 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain PhoH PF02562.16 gi|282164800|ref|YP_003357185.1| - 0.037 13.5 1.1 12 5.3 0.0 3.2 3 0 0 3 3 3 0 PhoH-like protein RNA_helicase PF00910.22 gi|282164800|ref|YP_003357185.1| - 0.091 13.2 0.0 21 5.6 0.0 2.7 2 0 0 2 2 2 0 RNA helicase PAXNEB PF05625.11 gi|282164800|ref|YP_003357185.1| - 0.1 11.7 0.2 0.32 10.1 0.0 1.8 2 0 0 2 2 2 0 PAXNEB protein UvrD-helicase PF00580.21 gi|282164800|ref|YP_003357185.1| - 1.1 8.8 0.0 1.1 8.8 0.0 2.5 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain OmpH PF03938.14 gi|282164800|ref|YP_003357185.1| - 2.6 8.4 10.2 4.9 7.5 10.2 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF87 PF01935.17 gi|282164800|ref|YP_003357185.1| - 4.7 7.2 6.2 2.8 8.0 0.1 3.0 3 0 0 3 3 3 0 Helicase HerA, central domain ATP_bind_1 PF03029.17 gi|282164800|ref|YP_003357185.1| - 6 6.6 5.8 8.8 6.0 0.0 2.8 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein KaiB PF07689.12 gi|282164801|ref|YP_003357186.1| - 5.5e-23 80.5 0.1 6.6e-23 80.3 0.1 1.1 1 0 0 1 1 1 1 KaiB domain Lzipper-MIP1 PF14389.6 gi|282164801|ref|YP_003357186.1| - 0.11 12.8 0.1 0.18 12.1 0.1 1.3 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 HATPase_c PF02518.26 gi|282164802|ref|YP_003357187.1| - 3.7e-20 72.5 0.0 9e-20 71.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|282164802|ref|YP_003357187.1| - 1.9e-17 63.4 0.0 5.2e-17 62.0 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|282164802|ref|YP_003357187.1| - 7.9e-07 29.1 0.8 3.6e-06 27.0 0.0 2.6 3 1 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.6 gi|282164802|ref|YP_003357187.1| - 7e-06 25.9 0.0 1.7e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.7 gi|282164802|ref|YP_003357187.1| - 0.00062 19.7 0.0 0.0019 18.2 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|282164802|ref|YP_003357187.1| - 0.0014 18.6 0.0 0.011 15.8 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 gi|282164802|ref|YP_003357187.1| - 0.0038 17.5 0.0 0.015 15.6 0.0 2.1 2 0 0 2 2 2 1 PAS fold SIMPL PF04402.14 gi|282164802|ref|YP_003357187.1| - 0.37 11.2 1.5 0.79 10.1 1.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF541) KaiB PF07689.12 gi|282164803|ref|YP_003357188.1| - 2.1e-20 72.2 0.1 3.4e-20 71.6 0.1 1.3 1 0 0 1 1 1 1 KaiB domain YabA PF06156.13 gi|282164803|ref|YP_003357188.1| - 0.0044 17.6 0.5 0.0077 16.9 0.5 1.5 1 0 0 1 1 1 1 Initiation control protein YabA HALZ PF02183.18 gi|282164803|ref|YP_003357188.1| - 0.0051 17.0 2.2 0.013 15.7 2.2 1.8 1 0 0 1 1 1 1 Homeobox associated leucine zipper Thioredoxin PF00085.20 gi|282164803|ref|YP_003357188.1| - 0.04 13.9 0.0 0.076 13.0 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin NYD-SP28_assoc PF14775.6 gi|282164803|ref|YP_003357188.1| - 0.13 12.3 0.6 0.25 11.5 0.6 1.4 1 0 0 1 1 1 0 Sperm tail C-terminal domain DUF617 PF04759.13 gi|282164803|ref|YP_003357188.1| - 0.15 12.1 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF617 Spt5-NGN PF03439.13 gi|282164804|ref|YP_003357189.1| - 3.2e-23 81.4 0.5 5.3e-23 80.7 0.5 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|282164804|ref|YP_003357189.1| - 1.4e-08 34.3 1.2 2.7e-07 30.3 0.2 2.4 2 0 0 2 2 2 1 KOW motif NusG PF02357.19 gi|282164804|ref|YP_003357189.1| - 0.021 15.3 0.4 0.33 11.5 0.1 2.4 2 1 0 2 2 2 0 Transcription termination factor nusG IMPDH PF00478.25 gi|282164804|ref|YP_003357189.1| - 0.024 13.7 0.0 0.03 13.3 0.0 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain SecE PF00584.20 gi|282164805|ref|YP_003357190.1| - 3.5e-06 26.8 0.8 3.9e-06 26.7 0.8 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex tRNA_deacylase PF04414.12 gi|282164806|ref|YP_003357191.1| - 3.3e-66 222.7 0.1 6.4e-66 221.8 0.1 1.5 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Tubulin PF00091.25 gi|282164806|ref|YP_003357191.1| - 5.8e-39 134.3 0.2 1.3e-38 133.2 0.2 1.6 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|282164806|ref|YP_003357191.1| - 1.1e-31 108.9 3.4 2.7e-31 107.7 2.2 2.4 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.6 gi|282164806|ref|YP_003357191.1| - 1.2 8.2 5.6 0.26 10.4 0.5 2.1 2 0 0 2 2 2 0 Tubulin like PIG-L PF02585.17 gi|282164807|ref|YP_003357192.1| - 7.3e-14 52.5 0.4 5.5e-12 46.4 0.3 2.5 2 1 0 2 2 2 1 GlcNAc-PI de-N-acetylase Glyco_trans_4_2 PF13477.6 gi|282164807|ref|YP_003357192.1| - 3.3e-05 24.0 0.0 5.2e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|282164807|ref|YP_003357192.1| - 0.13 12.2 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 DUF3721 PF12518.8 gi|282164807|ref|YP_003357192.1| - 0.19 11.6 0.4 0.61 10.0 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function zf-CDGSH PF09360.10 gi|282164809|ref|YP_003357194.1| - 2.2e-39 133.4 3.3 3.2e-19 68.9 0.3 2.5 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.11 gi|282164809|ref|YP_003357194.1| - 6.8e-07 29.3 0.1 3.3e-06 27.1 0.0 2.1 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster OppC_N PF12911.7 gi|282164810|ref|YP_003357195.1| - 0.51 10.3 2.1 0.88 9.6 2.1 1.3 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C IF-2B PF01008.17 gi|282164812|ref|YP_003357197.1| - 2.9e-89 299.0 1.9 3.3e-89 298.8 1.9 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family LUD_dom PF02589.15 gi|282164812|ref|YP_003357197.1| - 0.047 13.4 2.0 0.41 10.3 1.5 2.2 1 1 1 2 2 2 0 LUD domain LOR PF04525.12 gi|282164814|ref|YP_003357199.1| - 0.00059 19.5 0.4 0.025 14.2 0.1 2.1 1 1 1 2 2 2 2 LURP-one-related DUF1825 PF08855.10 gi|282164814|ref|YP_003357199.1| - 0.0066 16.4 0.2 0.01 15.8 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1825) Peptidase_C6 PF00851.18 gi|282164814|ref|YP_003357199.1| - 0.14 11.0 0.0 0.19 10.6 0.0 1.1 1 0 0 1 1 1 0 Helper component proteinase TPPK_C PF12555.8 gi|282164816|ref|YP_003357201.1| - 0.0034 17.4 0.4 0.0061 16.6 0.4 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphokinase C terminal ACC_epsilon PF13822.6 gi|282164816|ref|YP_003357201.1| - 0.2 12.4 1.0 0.4 11.4 1.0 1.4 1 0 0 1 1 1 0 Acyl-CoA carboxylase epsilon subunit Mem_trans PF03547.18 gi|282164818|ref|YP_003357203.1| - 2.3e-19 69.1 30.2 1.6e-11 43.3 11.5 2.0 1 1 1 2 2 2 2 Membrane transport protein DUF4870 PF09685.10 gi|282164819|ref|YP_003357204.1| - 3.9e-07 30.2 8.2 4.6e-07 29.9 8.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) SseC PF04888.12 gi|282164819|ref|YP_003357204.1| - 2.5 7.6 7.6 1.7 8.1 4.2 1.9 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family FHIPEP PF00771.20 gi|282164819|ref|YP_003357204.1| - 7.9 4.8 6.5 9.2 4.6 6.5 1.1 1 0 0 1 1 1 0 FHIPEP family TNFR_16_TM PF18422.1 gi|282164819|ref|YP_003357204.1| - 7.9 6.5 8.8 0.32 11.0 1.4 2.4 2 1 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain Peptidase_M22 PF00814.25 gi|282164820|ref|YP_003357205.1| - 1.2e-83 281.0 0.1 1.4e-83 280.7 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|282164820|ref|YP_003357205.1| - 0.038 13.7 0.1 0.058 13.0 0.1 1.4 1 1 0 1 1 1 0 Carbamoyltransferase N-terminus RIO1 PF01163.22 gi|282164821|ref|YP_003357206.1| - 9.1e-11 41.7 0.0 1.4e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|282164821|ref|YP_003357206.1| - 1.7e-09 37.9 0.1 1.1e-05 25.5 0.1 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|282164821|ref|YP_003357206.1| - 1.2e-05 24.8 0.0 3.5e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|282164821|ref|YP_003357206.1| - 1.6e-05 24.4 0.1 0.00038 19.9 0.1 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.17 gi|282164821|ref|YP_003357206.1| - 0.0024 17.2 0.0 0.007 15.7 0.0 1.8 1 1 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.11 gi|282164821|ref|YP_003357206.1| - 0.003 17.2 0.0 0.0046 16.6 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) EcKinase PF02958.20 gi|282164821|ref|YP_003357206.1| - 0.0073 15.6 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase PKcGMP_CC PF16808.5 gi|282164821|ref|YP_003357206.1| - 1 9.3 7.4 0.24 11.3 1.8 2.2 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Na_Ca_ex PF01699.24 gi|282164822|ref|YP_003357207.1| - 4.5e-48 163.0 40.5 4.1e-24 85.3 16.6 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Diphthami_syn_2 PF01902.17 gi|282164823|ref|YP_003357208.1| - 1.5e-71 240.4 0.0 1.6e-71 240.3 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|282164823|ref|YP_003357208.1| - 0.2 11.1 0.0 0.54 9.7 0.0 1.6 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Amidohydro_1 PF01979.20 gi|282164824|ref|YP_003357209.1| - 5.9e-49 167.2 0.1 7.6e-49 166.9 0.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|282164824|ref|YP_003357209.1| - 7.9e-06 25.6 0.3 0.088 12.3 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|282164824|ref|YP_003357209.1| - 0.0039 16.6 0.0 0.0079 15.6 0.0 1.4 1 1 0 1 1 1 1 Adenosine/AMP deaminase MFS_1 PF07690.16 gi|282164825|ref|YP_003357210.1| - 7.3e-60 202.8 54.8 3.5e-42 144.6 24.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|282164825|ref|YP_003357210.1| - 1.2e-12 47.4 23.8 1.8e-06 27.1 4.3 3.0 2 1 1 3 3 3 3 MFS_1 like family Sugar_tr PF00083.24 gi|282164825|ref|YP_003357210.1| - 7.8e-09 34.9 29.4 3.4e-07 29.5 8.6 3.2 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_3 PF05977.13 gi|282164825|ref|YP_003357210.1| - 5.2e-08 31.7 31.9 7.4e-07 27.9 31.9 2.0 1 1 0 1 1 1 1 Transmembrane secretion effector LacY_symp PF01306.19 gi|282164825|ref|YP_003357210.1| - 6.5e-08 31.8 18.7 0.00025 20.0 5.5 2.5 2 1 0 2 2 2 2 LacY proton/sugar symporter DUF697 PF05128.12 gi|282164825|ref|YP_003357210.1| - 3.1 7.5 7.7 0.12 12.0 0.4 2.3 2 2 2 4 4 4 0 Domain of unknown function (DUF697) TetR_N PF00440.23 gi|282164826|ref|YP_003357211.1| - 2.1e-16 59.4 0.0 3.9e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_2 PF08361.11 gi|282164826|ref|YP_003357211.1| - 1.7e-09 37.8 0.0 2.6e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 MAATS-type transcriptional repressor, C-terminal region TetR_C_24 PF17932.1 gi|282164826|ref|YP_003357211.1| - 5.7e-05 23.4 0.1 0.00015 22.0 0.1 1.8 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_4 PF08359.11 gi|282164826|ref|YP_003357211.1| - 0.00016 21.8 0.0 0.0003 21.0 0.0 1.5 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region TetR_C_29 PF17938.1 gi|282164826|ref|YP_003357211.1| - 0.00029 20.9 0.1 0.002 18.2 0.1 2.1 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_6 PF13977.6 gi|282164826|ref|YP_003357211.1| - 0.0003 21.0 0.0 0.00059 20.0 0.0 1.6 1 1 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_11 PF16859.5 gi|282164826|ref|YP_003357211.1| - 0.00076 19.8 0.6 0.0018 18.6 0.3 1.8 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain LacI PF00356.21 gi|282164826|ref|YP_003357211.1| - 0.01 15.6 0.4 0.15 11.8 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family TetR_C_5 PF08360.11 gi|282164826|ref|YP_003357211.1| - 0.07 13.3 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 QacR-like protein, C-terminal region TetR_C_17 PF17922.1 gi|282164826|ref|YP_003357211.1| - 0.1 12.7 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Fer4 PF00037.27 gi|282164827|ref|YP_003357212.1| - 7.3e-09 35.1 14.9 2.2e-05 24.0 3.9 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282164827|ref|YP_003357212.1| - 4.5e-07 29.9 10.0 4.5e-07 29.9 10.0 2.7 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282164827|ref|YP_003357212.1| - 2e-06 28.3 24.7 0.00022 21.7 13.2 3.2 1 1 2 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282164827|ref|YP_003357212.1| - 3.1e-05 24.1 10.9 3.1e-05 24.1 10.9 3.3 1 1 2 3 3 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282164827|ref|YP_003357212.1| - 5.3e-05 23.1 13.2 0.00021 21.2 2.8 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282164827|ref|YP_003357212.1| - 0.00019 21.4 3.3 0.00019 21.4 3.3 3.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282164827|ref|YP_003357212.1| - 0.0039 17.3 12.2 0.0039 17.3 12.2 2.8 2 2 0 2 2 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282164827|ref|YP_003357212.1| - 0.02 15.6 1.8 0.02 15.6 1.8 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|282164827|ref|YP_003357212.1| - 0.022 15.7 13.2 0.064 14.2 3.0 3.5 2 2 3 5 5 5 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|282164827|ref|YP_003357212.1| - 0.11 13.1 4.2 0.11 13.1 4.2 3.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|282164827|ref|YP_003357212.1| - 0.11 13.0 3.5 0.11 13.0 3.5 3.2 4 0 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I ACT_7 PF13840.6 gi|282164828|ref|YP_003357213.1| - 1.2e-22 79.4 0.0 1.8e-22 78.9 0.0 1.3 1 0 0 1 1 1 1 ACT domain Aminotran_1_2 PF00155.21 gi|282164829|ref|YP_003357214.1| - 4.2e-38 131.5 0.0 5.1e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|282164829|ref|YP_003357214.1| - 5.5e-06 25.4 0.0 3.4e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 Alanine-glyoxylate amino-transferase YabP PF07873.11 gi|282164830|ref|YP_003357215.1| - 0.019 14.7 0.0 0.031 14.1 0.0 1.3 1 0 0 1 1 1 0 YabP family Prim-Pol PF09250.11 gi|282164833|ref|YP_003357218.1| - 6.9e-25 88.3 0.0 9e-25 87.9 0.0 1.1 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal AAA_25 PF13481.6 gi|282164834|ref|YP_003357219.1| - 5.3e-41 140.3 0.0 8.6e-41 139.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|282164834|ref|YP_003357219.1| - 0.00017 21.0 0.0 0.0037 16.7 0.0 2.4 1 1 0 1 1 1 1 KaiC AAA PF00004.29 gi|282164834|ref|YP_003357219.1| - 0.0016 18.9 0.0 0.0058 17.1 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF5603 PF18231.1 gi|282164834|ref|YP_003357219.1| - 0.12 12.7 0.6 2.4 8.5 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF5603) Phage_integrase PF00589.22 gi|282164838|ref|YP_003357223.1| - 4.4e-25 88.4 0.2 1.1e-24 87.1 0.1 1.7 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|282164838|ref|YP_003357223.1| - 0.026 15.0 0.1 0.2 12.2 0.0 2.3 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain C_GCAxxG_C_C PF09719.10 gi|282164839|ref|YP_003357224.1| - 9.7e-36 122.7 2.5 1.1e-35 122.5 2.5 1.0 1 0 0 1 1 1 1 Putative redox-active protein (C_GCAxxG_C_C) Hormone_5 PF00184.17 gi|282164839|ref|YP_003357224.1| - 0.022 15.6 3.3 0.029 15.2 0.1 2.4 3 0 0 3 3 3 0 Neurohypophysial hormones, C-terminal Domain RE_EcoO109I PF14511.6 gi|282164839|ref|YP_003357224.1| - 0.085 12.4 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Type II restriction endonuclease EcoO109I PhzC-PhzF PF02567.16 gi|282164840|ref|YP_003357225.1| - 9.7e-55 186.0 0.0 1.1e-54 185.8 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.11 gi|282164840|ref|YP_003357225.1| - 0.12 11.4 0.0 0.17 10.9 0.0 1.1 1 0 0 1 1 1 0 Proline racemase Transcrip_act PF04949.13 gi|282164841|ref|YP_003357226.1| - 0.0047 16.8 0.9 0.006 16.5 0.9 1.1 1 0 0 1 1 1 1 Transcriptional activator COMP PF11598.8 gi|282164841|ref|YP_003357226.1| - 0.035 14.6 0.7 0.035 14.6 0.7 1.9 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein eIF-1a PF01176.19 gi|282164842|ref|YP_003357227.1| - 1.6e-20 72.6 0.4 2.9e-20 71.8 0.1 1.5 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 gi|282164842|ref|YP_003357227.1| - 0.013 15.2 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 RsgA N-terminal domain NTP_transf_9 PF04248.12 gi|282164842|ref|YP_003357227.1| - 0.18 11.7 0.1 0.44 10.5 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF427) Inhibitor_I42 PF09394.10 gi|282164843|ref|YP_003357228.1| - 2.6e-08 34.1 0.7 6.6e-08 32.9 0.3 1.8 2 0 0 2 2 2 1 Chagasin family peptidase inhibitor I42 FrhB_FdhB_C PF04432.13 gi|282164844|ref|YP_003357229.1| - 3e-32 111.6 0.0 5.4e-32 110.8 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|282164844|ref|YP_003357229.1| - 4e-14 52.5 0.2 6.6e-14 51.8 0.2 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_16 PF13484.6 gi|282164844|ref|YP_003357229.1| - 2.7e-06 28.2 6.4 0.023 15.6 0.4 3.0 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|282164844|ref|YP_003357229.1| - 3.9e-06 26.9 10.3 3.9e-06 26.9 10.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282164844|ref|YP_003357229.1| - 7.2e-06 26.5 10.0 0.0088 16.6 0.9 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282164844|ref|YP_003357229.1| - 7.9e-06 25.9 10.7 7.9e-06 25.9 10.7 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282164844|ref|YP_003357229.1| - 1.7e-05 25.1 2.7 0.048 14.1 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282164844|ref|YP_003357229.1| - 2.3e-05 24.2 19.4 0.00016 21.6 1.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|282164844|ref|YP_003357229.1| - 0.00012 22.3 2.7 0.00025 21.2 2.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282164844|ref|YP_003357229.1| - 0.0003 21.1 16.0 0.011 16.1 1.2 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282164844|ref|YP_003357229.1| - 0.00068 19.6 20.4 0.007 16.4 2.8 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.27 gi|282164844|ref|YP_003357229.1| - 0.003 17.3 2.0 0.003 17.3 2.0 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282164844|ref|YP_003357229.1| - 0.021 14.9 2.2 0.021 14.9 2.2 2.6 2 1 1 3 3 2 0 4Fe-4S dicluster domain baeRF_family10 PF18854.1 gi|282164844|ref|YP_003357229.1| - 0.078 13.2 0.1 0.17 12.1 0.0 1.6 1 1 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 10 Fer4_22 PF17179.4 gi|282164844|ref|YP_003357229.1| - 0.77 10.6 9.6 0.41 11.5 0.3 2.6 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282164844|ref|YP_003357229.1| - 3.1 8.4 19.1 1.2 9.8 2.1 2.7 2 1 3 5 5 4 0 4Fe-4S dicluster domain Ost5 PF05251.12 gi|282164845|ref|YP_003357230.1| - 0.023 14.9 4.6 3.4 8.0 0.5 2.7 2 0 0 2 2 2 0 Oligosaccharyltransferase subunit 5 TMEM100 PF16311.5 gi|282164845|ref|YP_003357230.1| - 0.042 13.4 0.3 0.086 12.4 0.3 1.6 1 1 0 1 1 1 0 Transmembrane protein 100 DUF373 PF04123.13 gi|282164845|ref|YP_003357230.1| - 0.12 11.8 10.7 1.1 8.7 5.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF373) UPF0542 PF15086.6 gi|282164845|ref|YP_003357230.1| - 0.3 11.1 2.8 0.42 10.6 0.0 2.6 2 1 0 2 2 2 0 Uncharacterised protein family UPF0542 DUF2556 PF10831.8 gi|282164845|ref|YP_003357230.1| - 0.44 10.5 0.1 0.44 10.5 0.1 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF2556) Baculo_11_kDa PF06143.11 gi|282164845|ref|YP_003357230.1| - 0.79 9.3 3.6 3.1 7.5 0.7 2.6 2 0 0 2 2 2 0 Baculovirus 11 kDa family Metallophos_2 PF12850.7 gi|282164846|ref|YP_003357231.1| - 2.1e-09 37.8 0.0 3.3e-08 33.9 0.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|282164846|ref|YP_003357231.1| - 2.1e-08 34.9 0.0 1e-07 32.7 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Thioredoxin PF00085.20 gi|282164847|ref|YP_003357232.1| - 6.8e-15 54.9 0.0 9e-15 54.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|282164847|ref|YP_003357232.1| - 0.0019 18.1 0.0 0.0027 17.6 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredox_DsbH PF03190.15 gi|282164847|ref|YP_003357232.1| - 0.0052 16.8 0.1 0.0083 16.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_8 PF13905.6 gi|282164847|ref|YP_003357232.1| - 0.037 14.4 0.1 0.23 11.8 0.1 1.9 1 1 0 1 1 1 0 Thioredoxin-like DUF836 PF05768.14 gi|282164847|ref|YP_003357232.1| - 0.037 14.4 0.0 0.056 13.9 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) OST3_OST6 PF04756.13 gi|282164847|ref|YP_003357232.1| - 0.053 12.9 0.0 0.068 12.5 0.0 1.2 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Thioredoxin_6 PF13848.6 gi|282164847|ref|YP_003357232.1| - 0.066 13.1 0.0 0.091 12.7 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin-like domain Pilin_N PF07790.11 gi|282164848|ref|YP_003357233.1| - 0.13 13.2 0.0 0.17 12.9 0.0 1.2 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Methyltransf_31 PF13847.6 gi|282164849|ref|YP_003357234.1| - 7.6e-18 64.7 0.0 9e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282164849|ref|YP_003357234.1| - 2.4e-17 63.3 0.0 3.7e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282164849|ref|YP_003357234.1| - 7.5e-17 61.8 0.1 1e-16 61.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282164849|ref|YP_003357234.1| - 1.1e-15 57.7 0.0 1.3e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|282164849|ref|YP_003357234.1| - 1.1e-10 42.2 0.0 1.5e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282164849|ref|YP_003357234.1| - 8.8e-09 35.4 0.0 1.8e-08 34.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|282164849|ref|YP_003357234.1| - 2.4e-07 30.7 0.1 3.4e-07 30.2 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|282164849|ref|YP_003357234.1| - 6.6e-07 29.0 0.0 1.1e-06 28.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|282164849|ref|YP_003357234.1| - 2.9e-05 23.5 0.0 4.2e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|282164849|ref|YP_003357234.1| - 0.00012 22.1 0.0 0.00018 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|282164849|ref|YP_003357234.1| - 0.00083 18.8 0.0 0.0011 18.5 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.19 gi|282164849|ref|YP_003357234.1| - 0.0014 18.8 0.0 0.0023 18.1 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_3 PF01596.17 gi|282164849|ref|YP_003357234.1| - 0.0019 17.4 0.1 0.11 11.7 0.0 2.0 2 0 0 2 2 2 1 O-methyltransferase Met_10 PF02475.16 gi|282164849|ref|YP_003357234.1| - 0.0023 17.7 0.0 0.0044 16.8 0.0 1.5 1 1 0 1 1 1 1 Met-10+ like-protein GCD14 PF08704.10 gi|282164849|ref|YP_003357234.1| - 0.0094 15.6 0.0 0.014 15.1 0.0 1.4 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.7 gi|282164849|ref|YP_003357234.1| - 0.017 15.0 0.0 0.04 13.8 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_2 PF00891.18 gi|282164849|ref|YP_003357234.1| - 0.057 12.7 0.2 0.11 11.8 0.2 1.4 1 1 0 1 1 1 0 O-methyltransferase domain Methyltransf_24 PF13578.6 gi|282164849|ref|YP_003357234.1| - 0.11 13.6 0.0 0.18 12.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|282164849|ref|YP_003357234.1| - 0.12 11.8 0.2 0.2 11.1 0.1 1.5 2 0 0 2 2 2 0 Putative methyltransferase DOT1 PF08123.13 gi|282164849|ref|YP_003357234.1| - 0.14 11.7 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 MetW PF07021.12 gi|282164849|ref|YP_003357234.1| - 0.23 11.0 0.0 0.32 10.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW GATase_4 PF13230.6 gi|282164850|ref|YP_003357235.1| - 9.3e-31 106.7 0.0 4.4e-29 101.2 0.0 2.0 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|282164850|ref|YP_003357235.1| - 5.5e-07 29.9 0.3 2.3e-06 27.8 0.2 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase domain DUF4131 PF13567.6 gi|282164851|ref|YP_003357236.1| - 0.12 12.0 0.1 0.14 11.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Paralemmin PF03285.15 gi|282164852|ref|YP_003357237.1| - 0.0059 16.2 5.1 0.0059 16.2 5.1 1.4 2 0 0 2 2 2 1 Paralemmin Drf_FH3 PF06367.16 gi|282164852|ref|YP_003357237.1| - 0.0077 15.9 1.1 0.01 15.4 1.1 1.1 1 0 0 1 1 1 1 Diaphanous FH3 Domain TMF_DNA_bd PF12329.8 gi|282164852|ref|YP_003357237.1| - 0.11 12.5 9.0 0.21 11.6 9.0 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding ATP11 PF06644.11 gi|282164852|ref|YP_003357237.1| - 0.19 11.5 10.5 0.31 10.8 10.5 1.3 1 0 0 1 1 1 0 ATP11 protein GAS PF13851.6 gi|282164852|ref|YP_003357237.1| - 0.21 10.9 9.5 0.28 10.5 9.5 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Sec2p PF06428.11 gi|282164852|ref|YP_003357237.1| - 0.35 10.9 8.1 0.7 9.9 8.1 1.6 1 1 0 1 1 1 0 GDP/GTP exchange factor Sec2p SlyX PF04102.12 gi|282164852|ref|YP_003357237.1| - 0.46 11.1 9.8 5.4 7.7 4.8 2.4 1 1 1 2 2 2 0 SlyX ParE_toxin PF05016.15 gi|282164852|ref|YP_003357237.1| - 0.47 11.1 2.5 0.97 10.1 2.5 1.7 1 1 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE Peptidase_S49_N PF08496.10 gi|282164852|ref|YP_003357237.1| - 4.7 7.3 7.8 6.6 6.8 7.8 1.3 1 0 0 1 1 1 0 Peptidase family S49 N-terminal PIEZO PF15917.5 gi|282164852|ref|YP_003357237.1| - 4.8 6.6 10.4 6.2 6.2 10.4 1.2 1 0 0 1 1 1 0 Piezo NTP_transf_2 PF01909.23 gi|282164853|ref|YP_003357238.1| - 3.2e-07 30.5 0.0 6.2e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|282164853|ref|YP_003357238.1| - 2.8e-06 27.3 0.0 7.9e-06 25.9 0.0 1.7 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Fe_dep_repress PF01325.19 gi|282164853|ref|YP_003357238.1| - 0.00015 21.9 0.1 0.00037 20.6 0.1 1.7 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|282164853|ref|YP_003357238.1| - 0.00098 19.0 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|282164853|ref|YP_003357238.1| - 0.0039 16.7 0.0 0.011 15.2 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|282164853|ref|YP_003357238.1| - 0.0055 16.5 0.0 0.0082 15.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|282164853|ref|YP_003357238.1| - 0.051 13.4 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|282164853|ref|YP_003357238.1| - 0.054 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain TrmB PF01978.19 gi|282164853|ref|YP_003357238.1| - 0.054 13.4 0.0 0.13 12.2 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.11 gi|282164853|ref|YP_003357238.1| - 0.086 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Fasciclin PF02469.22 gi|282164854|ref|YP_003357239.1| - 2.5e-11 43.9 0.0 4.1e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Fasciclin domain DUF2946 PF11162.8 gi|282164854|ref|YP_003357239.1| - 0.038 14.6 1.5 0.038 14.6 1.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2946) Flavodoxin_5 PF12724.7 gi|282164855|ref|YP_003357240.1| - 2.6e-09 37.5 0.0 8.4e-05 22.8 0.0 2.2 2 0 0 2 2 2 2 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|282164855|ref|YP_003357240.1| - 1.6e-08 34.4 0.0 0.0028 17.3 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain FMN_red PF03358.15 gi|282164855|ref|YP_003357240.1| - 2.6e-06 27.3 0.0 2.9e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.7 gi|282164855|ref|YP_003357240.1| - 0.00022 21.0 0.1 0.0025 17.5 0.1 2.0 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_1 PF00258.25 gi|282164855|ref|YP_003357240.1| - 0.01 16.1 0.0 0.052 13.8 0.0 2.0 2 1 0 2 2 2 0 Flavodoxin Fasciclin PF02469.22 gi|282164856|ref|YP_003357241.1| - 4.7e-07 30.1 0.0 6.7e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Fasciclin domain DUF4330 PF14221.6 gi|282164857|ref|YP_003357242.1| - 0.019 15.2 0.0 0.024 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Myco_arth_vir_N PF09610.10 gi|282164859|ref|YP_003357244.1| - 0.026 14.6 1.3 0.047 13.8 1.3 1.4 1 0 0 1 1 1 0 Mycoplasma virulence signal region (Myco_arth_vir_N) PAS_9 PF13426.7 gi|282164860|ref|YP_003357245.1| - 2.7e-72 239.6 0.1 1.7e-10 41.0 0.0 7.2 7 0 0 7 7 7 7 PAS domain PAS_4 PF08448.10 gi|282164860|ref|YP_003357245.1| - 3.7e-66 220.3 0.0 6.9e-12 45.6 0.0 7.2 7 0 0 7 7 7 7 PAS fold PAS PF00989.25 gi|282164860|ref|YP_003357245.1| - 1.6e-60 202.1 0.0 2.1e-14 53.4 0.0 7.2 7 0 0 7 7 7 7 PAS fold PAS_3 PF08447.12 gi|282164860|ref|YP_003357245.1| - 3e-57 190.9 0.0 5.1e-14 52.3 0.0 6.9 7 0 0 7 7 7 5 PAS fold PAS_8 PF13188.7 gi|282164860|ref|YP_003357245.1| - 4e-31 106.5 0.0 1e-06 28.6 0.0 6.1 6 0 0 6 6 6 5 PAS domain HTH_IclR PF09339.10 gi|282164860|ref|YP_003357245.1| - 2.2e-08 33.8 0.0 4.9e-08 32.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain PAS_11 PF14598.6 gi|282164860|ref|YP_003357245.1| - 2e-05 24.7 0.0 1 9.5 0.0 3.9 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.7 gi|282164860|ref|YP_003357245.1| - 6.8e-05 23.0 0.0 3 8.1 0.0 5.4 4 2 0 4 4 4 1 PAS fold HTH_5 PF01022.20 gi|282164860|ref|YP_003357245.1| - 0.0001 22.1 0.0 0.00026 20.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PAS_12 PF18095.1 gi|282164860|ref|YP_003357245.1| - 0.00013 21.7 0.0 2.3 7.8 0.0 4.8 5 0 0 5 5 5 1 UPF0242 C-terminal PAS-like domain HTH_24 PF13412.6 gi|282164860|ref|YP_003357245.1| - 0.00071 19.1 3.2 0.001 18.6 0.0 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|282164860|ref|YP_003357245.1| - 0.0019 18.0 0.0 0.0057 16.4 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 gi|282164860|ref|YP_003357245.1| - 0.017 15.0 0.0 0.044 13.7 0.0 1.6 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|282164860|ref|YP_003357245.1| - 0.03 14.2 0.1 0.11 12.4 0.1 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_3 PF01381.22 gi|282164860|ref|YP_003357245.1| - 0.032 14.3 0.0 0.13 12.3 0.0 2.1 1 0 0 1 1 1 0 Helix-turn-helix HTH_26 PF13443.6 gi|282164860|ref|YP_003357245.1| - 0.034 14.6 0.0 0.1 13.0 0.0 1.8 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain RSS_P20 PF11757.8 gi|282164860|ref|YP_003357245.1| - 0.072 13.5 0.0 0.24 11.8 0.0 1.9 1 0 0 1 1 1 0 Suppressor of RNA silencing P21-like N-terminal domain HTH_29 PF13551.6 gi|282164860|ref|YP_003357245.1| - 0.1 12.7 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix TBPIP PF07106.13 gi|282164860|ref|YP_003357245.1| - 0.13 12.2 0.0 0.44 10.5 0.0 1.9 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_28 PF13518.6 gi|282164860|ref|YP_003357245.1| - 0.14 12.3 0.0 0.4 10.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain PAS_4 PF08448.10 gi|282164862|ref|YP_003357247.1| - 2.3e-22 79.3 0.0 1.9e-15 57.1 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|282164862|ref|YP_003357247.1| - 2.7e-19 69.2 0.0 2.9e-13 49.8 0.0 3.6 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.26 gi|282164862|ref|YP_003357247.1| - 2.9e-19 69.6 0.0 6e-19 68.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|282164862|ref|YP_003357247.1| - 6.4e-17 61.7 0.0 1.3e-10 41.4 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|282164862|ref|YP_003357247.1| - 2.9e-12 46.7 0.0 3.8e-08 33.5 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|282164862|ref|YP_003357247.1| - 7.2e-09 35.5 0.0 0.0076 16.3 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.6 gi|282164862|ref|YP_003357247.1| - 3.4e-06 27.6 0.0 0.019 15.5 0.0 3.5 3 1 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.6 gi|282164862|ref|YP_003357247.1| - 0.00079 19.4 0.0 0.0019 18.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain dCache_1 PF02743.18 gi|282164862|ref|YP_003357247.1| - 0.015 15.1 0.0 1.1 9.0 0.0 2.4 1 1 0 1 1 1 0 Cache domain MIF4G_like_2 PF09090.11 gi|282164862|ref|YP_003357247.1| - 0.15 11.5 0.1 0.42 10.0 0.0 1.7 2 0 0 2 2 2 0 MIF4G like HATPase_c PF02518.26 gi|282164863|ref|YP_003357248.1| - 4e-21 75.6 0.0 1.3e-20 74.0 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|282164863|ref|YP_003357248.1| - 2.1e-10 40.8 0.0 6.7e-10 39.2 0.0 1.9 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|282164863|ref|YP_003357248.1| - 5.9e-08 32.9 0.0 2.5e-07 30.9 0.0 2.0 1 1 0 1 1 1 1 PAS fold PAS PF00989.25 gi|282164863|ref|YP_003357248.1| - 1.8e-07 31.1 0.0 3.7e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|282164863|ref|YP_003357248.1| - 0.0021 18.0 0.0 0.0036 17.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|282164863|ref|YP_003357248.1| - 0.0039 17.2 0.0 0.01 15.8 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.6 gi|282164863|ref|YP_003357248.1| - 0.0086 16.0 0.0 0.022 14.7 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|282164863|ref|YP_003357248.1| - 0.15 11.9 0.0 0.39 10.5 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 7TMR-DISM_7TM PF07695.11 gi|282164863|ref|YP_003357248.1| - 5.8 6.8 45.1 0.43 10.4 35.8 2.1 1 1 1 2 2 2 0 7TM diverse intracellular signalling Yip1 PF04893.17 gi|282164864|ref|YP_003357249.1| - 0.00097 18.9 24.1 0.0019 18.0 24.1 1.5 1 1 0 1 1 1 1 Yip1 domain Peptidase_U4 PF03419.13 gi|282164864|ref|YP_003357249.1| - 0.012 14.9 15.0 0.017 14.5 15.0 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA SUa-2TM PF18179.1 gi|282164864|ref|YP_003357249.1| - 0.4 9.9 4.7 0.41 9.9 4.7 1.1 1 0 0 1 1 1 0 SMODS- and Ubiquitin system-associated 2TM effector domain DUF2070 PF09843.9 gi|282164864|ref|YP_003357249.1| - 1.6 6.9 14.9 1.7 6.9 14.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Trep_Strep PF09605.10 gi|282164864|ref|YP_003357249.1| - 2.9 7.8 24.7 10 6.0 24.7 1.7 1 1 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF3767 PF12597.8 gi|282164864|ref|YP_003357249.1| - 7.5 6.4 7.3 34 4.3 6.9 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3767) CreD PF06123.12 gi|282164864|ref|YP_003357249.1| - 8.7 5.0 10.6 11 4.7 10.6 1.1 1 0 0 1 1 1 0 Inner membrane protein CreD Flavin_Reduct PF01613.18 gi|282164865|ref|YP_003357250.1| - 5.6e-23 81.7 0.0 6.5e-23 81.5 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain HicA_toxin PF07927.12 gi|282164866|ref|YP_003357251.1| - 0.0089 16.1 0.0 0.013 15.5 0.0 1.4 1 1 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, DUF1127 PF06568.11 gi|282164866|ref|YP_003357251.1| - 0.14 11.9 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1127) PAS_3 PF08447.12 gi|282164867|ref|YP_003357252.1| - 1.5e-44 150.2 0.8 1.6e-16 60.3 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|282164867|ref|YP_003357252.1| - 2.6e-19 69.3 0.0 9.9e-10 38.4 0.0 3.5 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|282164867|ref|YP_003357252.1| - 1.8e-17 63.9 0.0 3.8e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|282164867|ref|YP_003357252.1| - 7.2e-17 61.5 0.0 2.6e-10 40.5 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|282164867|ref|YP_003357252.1| - 9.6e-12 45.1 0.0 3.7e-07 30.4 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|282164867|ref|YP_003357252.1| - 1.3e-10 41.0 0.0 7.1e-09 35.5 0.0 3.0 3 0 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.6 gi|282164867|ref|YP_003357252.1| - 0.00012 22.0 0.0 0.00026 20.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|282164867|ref|YP_003357252.1| - 0.055 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain PAS_9 PF13426.7 gi|282164868|ref|YP_003357253.1| - 5.6e-34 116.5 0.0 1.5e-15 57.3 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|282164868|ref|YP_003357253.1| - 7.9e-32 109.8 0.0 1.5e-11 44.6 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|282164868|ref|YP_003357253.1| - 4.6e-29 100.7 0.0 3.2e-15 56.1 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|282164868|ref|YP_003357253.1| - 2.5e-27 95.0 0.0 3.1e-13 49.8 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|282164868|ref|YP_003357253.1| - 2.5e-21 76.3 0.0 1.2e-20 74.0 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|282164868|ref|YP_003357253.1| - 8.5e-18 64.0 0.0 9.2e-06 25.6 0.0 3.5 3 0 0 3 3 3 3 PAS domain HATPase_c_5 PF14501.6 gi|282164868|ref|YP_003357253.1| - 9e-06 25.5 0.0 0.00014 21.7 0.0 2.6 3 0 0 3 3 3 1 GHKL domain HATPase_c_2 PF13581.6 gi|282164868|ref|YP_003357253.1| - 0.0012 18.8 0.0 0.0033 17.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.6 gi|282164868|ref|YP_003357253.1| - 0.012 16.2 0.0 4.2 8.0 0.0 3.1 2 1 0 2 2 2 0 PAS domain PAS_4 PF08448.10 gi|282164869|ref|YP_003357254.1| - 3e-42 143.3 0.0 2.4e-11 43.9 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|282164869|ref|YP_003357254.1| - 8.5e-36 122.4 0.0 3.2e-10 40.2 0.0 5.2 6 0 0 6 6 6 4 PAS domain PAS PF00989.25 gi|282164869|ref|YP_003357254.1| - 3.1e-25 88.4 0.0 2.3e-06 27.6 0.0 6.1 5 2 0 5 5 5 4 PAS fold HATPase_c PF02518.26 gi|282164869|ref|YP_003357254.1| - 1.8e-16 60.7 0.0 4e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|282164869|ref|YP_003357254.1| - 2.4e-15 56.6 0.1 2.9e-07 30.7 0.2 5.2 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.7 gi|282164869|ref|YP_003357254.1| - 3e-13 49.5 0.0 0.035 14.1 0.0 4.7 4 0 0 4 4 4 3 PAS domain PAS_7 PF12860.7 gi|282164869|ref|YP_003357254.1| - 1.3e-05 25.4 0.1 2.3 8.4 0.1 4.9 4 1 0 4 4 4 2 PAS fold HATPase_c_2 PF13581.6 gi|282164869|ref|YP_003357254.1| - 0.00031 20.7 0.0 0.00079 19.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain sCache_3_2 PF17203.4 gi|282164869|ref|YP_003357254.1| - 0.014 15.5 0.1 8.9 6.4 0.1 2.7 2 0 0 2 2 2 0 Single cache domain 3 PAS_11 PF14598.6 gi|282164869|ref|YP_003357254.1| - 0.035 14.2 0.0 0.31 11.2 0.0 2.4 3 0 0 3 3 2 0 PAS domain DUF1706 PF08020.11 gi|282164869|ref|YP_003357254.1| - 0.82 9.6 2.6 1.8 8.5 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1706) Tup_N PF08581.10 gi|282164869|ref|YP_003357254.1| - 0.82 10.0 9.1 4.4 7.7 0.7 3.4 4 0 0 4 4 3 0 Tup N-terminal OmpH PF03938.14 gi|282164869|ref|YP_003357254.1| - 1.8 8.9 7.8 3.9 7.8 0.0 3.9 4 0 0 4 4 4 0 Outer membrane protein (OmpH-like) SpaA PF17802.1 gi|282164870|ref|YP_003357255.1| - 0.062 13.6 0.2 15 6.0 0.1 2.2 2 0 0 2 2 2 0 Prealbumin-like fold domain FtsH_ext PF06480.15 gi|282164870|ref|YP_003357255.1| - 0.075 13.4 0.1 0.12 12.7 0.1 1.3 1 0 0 1 1 1 0 FtsH Extracellular TIR_2 PF13676.6 gi|282164871|ref|YP_003357256.1| - 8e-22 78.1 0.0 1.5e-21 77.2 0.0 1.5 1 0 0 1 1 1 1 TIR domain DUF1080 PF06439.11 gi|282164871|ref|YP_003357256.1| - 1.3e-08 35.2 0.1 2.1e-08 34.5 0.1 1.4 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1080) TIR PF01582.20 gi|282164871|ref|YP_003357256.1| - 3.6e-07 30.2 0.0 5.6e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 TIR domain DUF1863 PF08937.11 gi|282164871|ref|YP_003357256.1| - 2.1e-05 24.8 0.1 0.018 15.3 0.0 2.6 2 0 0 2 2 2 2 MTH538 TIR-like domain (DUF1863) Laminin_G_3 PF13385.6 gi|282164871|ref|YP_003357256.1| - 0.0015 18.7 0.3 0.0038 17.4 0.1 1.7 1 1 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily TIR-like PF10137.9 gi|282164871|ref|YP_003357256.1| - 0.025 14.6 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 Predicted nucleotide-binding protein containing TIR-like domain Laminin_G_1 PF00054.23 gi|282164871|ref|YP_003357256.1| - 0.033 14.4 0.1 0.9 9.8 0.0 2.3 1 1 1 2 2 2 0 Laminin G domain Laminin_G_2 PF02210.24 gi|282164871|ref|YP_003357256.1| - 0.043 14.4 0.0 0.1 13.2 0.0 1.6 1 1 0 1 1 1 0 Laminin G domain Sigma_reg_N PF13800.6 gi|282164871|ref|YP_003357256.1| - 0.46 10.8 3.4 2.1 8.7 0.1 2.4 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF5325 PF17259.2 gi|282164871|ref|YP_003357256.1| - 5.6 6.9 7.4 10 6.1 1.4 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5325) PAS_9 PF13426.7 gi|282164872|ref|YP_003357257.1| - 2.6e-21 75.8 0.7 6e-12 45.7 0.1 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|282164872|ref|YP_003357257.1| - 1.3e-19 70.3 0.1 2e-09 37.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|282164872|ref|YP_003357257.1| - 6.5e-19 68.0 0.0 2.5e-11 43.7 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|282164872|ref|YP_003357257.1| - 8.1e-18 64.7 0.0 7.1e-11 42.3 0.0 2.3 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|282164872|ref|YP_003357257.1| - 4.7e-10 40.0 0.1 3.7e-09 37.1 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|282164872|ref|YP_003357257.1| - 5.6e-07 29.4 0.0 1.8e-06 27.9 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.6 gi|282164872|ref|YP_003357257.1| - 0.00051 20.6 0.1 0.0032 18.0 0.0 2.2 2 1 0 2 2 2 1 PAS domain PAS_7 PF12860.7 gi|282164872|ref|YP_003357257.1| - 0.0015 18.7 0.4 0.29 11.3 0.0 3.5 3 0 0 3 3 3 1 PAS fold INT_SG_DDX_CT_C PF15300.6 gi|282164872|ref|YP_003357257.1| - 0.22 11.4 1.2 4.8 7.1 0.0 3.1 3 0 0 3 3 3 0 INTS6/SAGE1/DDX26B/CT45 C-terminus CPBP PF02517.16 gi|282164873|ref|YP_003357258.1| - 2.4e-14 53.5 1.5 2.4e-14 53.5 1.5 2.7 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease NTP_transf_2 PF01909.23 gi|282164874|ref|YP_003357259.1| - 3.3e-09 36.9 0.1 5.3e-09 36.3 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|282164874|ref|YP_003357259.1| - 4.8e-07 29.8 0.1 9.6e-07 28.8 0.1 1.6 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HTH_24 PF13412.6 gi|282164874|ref|YP_003357259.1| - 0.00071 19.1 0.0 0.011 15.3 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|282164874|ref|YP_003357259.1| - 0.0058 16.6 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_IclR PF09339.10 gi|282164874|ref|YP_003357259.1| - 0.013 15.3 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|282164874|ref|YP_003357259.1| - 0.026 14.5 0.0 0.42 10.6 0.0 2.4 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain DUF294 PF03445.13 gi|282164874|ref|YP_003357259.1| - 0.034 13.9 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 MarR_2 PF12802.7 gi|282164874|ref|YP_003357259.1| - 0.041 13.8 0.0 0.1 12.5 0.0 1.6 2 0 0 2 2 2 0 MarR family SVM_signal PF12113.8 gi|282164874|ref|YP_003357259.1| - 1.3 9.0 6.4 0.72 9.8 3.1 2.3 2 0 0 2 2 2 0 SVM protein signal sequence HEPN PF05168.14 gi|282164875|ref|YP_003357260.1| - 2.6e-13 50.1 0.4 3.3e-13 49.8 0.4 1.1 1 0 0 1 1 1 1 HEPN domain Nitroreductase PF00881.24 gi|282164877|ref|YP_003357262.1| - 8.9e-36 123.5 0.0 1.1e-35 123.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|282164877|ref|YP_003357262.1| - 8.5e-17 61.4 0.1 1.3e-07 31.4 0.1 3.1 1 1 2 3 3 3 3 Putative TM nitroreductase SBDS PF01172.18 gi|282164877|ref|YP_003357262.1| - 0.071 13.2 0.0 0.28 11.3 0.0 1.9 1 1 1 2 2 2 0 Shwachman-Bodian-Diamond syndrome (SBDS) protein XK-related PF09815.9 gi|282164878|ref|YP_003357263.1| - 0.03 13.4 6.3 0.062 12.4 0.2 2.0 2 0 0 2 2 2 0 XK-related protein CPP1-like PF11833.8 gi|282164878|ref|YP_003357263.1| - 0.053 13.2 2.9 0.089 12.4 2.9 1.3 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Pex24p PF06398.11 gi|282164878|ref|YP_003357263.1| - 0.99 8.3 3.7 1 8.3 3.7 1.0 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin Herpes_LMP1 PF05297.11 gi|282164878|ref|YP_003357263.1| - 3.5 6.7 7.1 0.23 10.6 2.4 1.4 2 0 0 2 2 2 0 Herpesvirus latent membrane protein 1 (LMP1) DUF4229 PF14012.6 gi|282164878|ref|YP_003357263.1| - 7.3 6.8 9.7 0.51 10.5 0.2 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF4229) Trep_Strep PF09605.10 gi|282164878|ref|YP_003357263.1| - 9.7 6.1 14.5 0.36 10.8 3.2 2.1 2 0 0 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) HigB_toxin PF09907.9 gi|282164879|ref|YP_003357264.1| - 0.0046 17.1 0.7 0.0067 16.6 0.7 1.3 1 0 0 1 1 1 1 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system Antimicrobial_9 PF08104.11 gi|282164879|ref|YP_003357264.1| - 0.091 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Ponericin L family ParE_toxin PF05016.15 gi|282164879|ref|YP_003357264.1| - 0.12 13.0 0.0 0.17 12.5 0.0 1.3 1 0 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE Nitroreductase PF00881.24 gi|282164881|ref|YP_003357266.1| - 0.0076 16.3 0.0 0.0089 16.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family PIN_3 PF13470.6 gi|282164882|ref|YP_003357267.1| - 0.0022 18.7 0.2 0.0045 17.8 0.2 1.5 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|282164882|ref|YP_003357267.1| - 0.02 15.4 0.0 0.031 14.8 0.0 1.5 1 1 0 1 1 1 0 PIN domain CCT PF06203.14 gi|282164882|ref|YP_003357267.1| - 8.1 6.6 0.0 8.1 6.6 0.0 3.0 4 0 0 4 4 4 0 CCT motif AAA_15 PF13175.6 gi|282164883|ref|YP_003357268.1| - 9.9e-27 94.6 6.5 6.8e-16 58.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|282164883|ref|YP_003357268.1| - 3.7e-25 89.4 3.7 7.4e-16 58.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|282164883|ref|YP_003357268.1| - 0.00051 20.6 1.8 0.0011 19.5 1.8 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|282164883|ref|YP_003357268.1| - 0.00058 19.4 0.8 0.0014 18.2 0.2 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|282164883|ref|YP_003357268.1| - 0.00086 18.7 0.1 0.0083 15.4 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) AAA_29 PF13555.6 gi|282164883|ref|YP_003357268.1| - 0.067 12.9 0.1 0.24 11.1 0.1 1.9 1 0 0 1 1 1 0 P-loop containing region of AAA domain Exo_endo_phos PF03372.23 gi|282164884|ref|YP_003357269.1| - 5.7e-08 32.6 0.0 8.4e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|282164884|ref|YP_003357269.1| - 0.0039 17.0 0.0 2.5 8.0 0.0 2.3 2 0 0 2 2 2 2 Endonuclease-reverse transcriptase N6_N4_Mtase PF01555.18 gi|282164886|ref|YP_003357271.1| - 7.3e-48 163.3 0.0 9.2e-48 163.0 0.0 1.1 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|282164886|ref|YP_003357271.1| - 0.00032 20.4 0.2 0.055 13.1 0.1 2.6 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|282164886|ref|YP_003357271.1| - 0.00039 21.1 0.0 0.017 15.8 0.0 2.8 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282164886|ref|YP_003357271.1| - 0.0018 18.1 0.0 0.093 12.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain MethyltransfD12 PF02086.15 gi|282164886|ref|YP_003357271.1| - 0.0018 18.0 1.4 0.041 13.6 0.0 2.3 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_11 PF08241.12 gi|282164886|ref|YP_003357271.1| - 0.0029 18.2 0.1 4.4 8.0 0.0 2.8 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_15 PF09445.10 gi|282164886|ref|YP_003357271.1| - 0.0031 17.1 0.0 0.32 10.6 0.0 2.2 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|282164886|ref|YP_003357271.1| - 0.0035 18.1 0.0 0.78 10.5 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|282164886|ref|YP_003357271.1| - 0.017 14.6 0.0 0.16 11.5 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase small domain PrmA PF06325.13 gi|282164886|ref|YP_003357271.1| - 0.041 13.3 0.0 0.065 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_5 PF01795.19 gi|282164886|ref|YP_003357271.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 MraW methylase family HSDR_N_2 PF13588.6 gi|282164888|ref|YP_003357273.1| - 3.7e-05 23.7 1.0 0.00021 21.3 0.1 2.8 3 0 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) COMPASS-Shg1 PF05205.12 gi|282164888|ref|YP_003357273.1| - 2.6 8.8 8.4 4.5 8.0 1.4 3.5 2 1 2 4 4 4 0 COMPASS (Complex proteins associated with Set1p) component shg1 Methyltrn_RNA_3 PF02598.17 gi|282164889|ref|YP_003357274.1| - 2.3e-68 230.8 0.0 2.6e-68 230.6 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|282164889|ref|YP_003357274.1| - 0.007 16.5 0.0 4.3 7.5 0.0 2.2 2 0 0 2 2 2 2 SpoU rRNA Methylase family Ribosomal_L3 PF00297.22 gi|282164890|ref|YP_003357275.1| - 6.6e-87 291.9 2.1 4.4e-86 289.2 2.1 1.8 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|282164891|ref|YP_003357276.1| - 1.8e-47 161.5 0.2 2.1e-47 161.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|282164892|ref|YP_003357277.1| - 2.4e-16 59.9 2.8 2.6e-15 56.6 2.8 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L2_C PF03947.18 gi|282164893|ref|YP_003357278.1| - 6e-45 152.5 0.9 1.8e-44 150.9 1.2 1.6 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|282164893|ref|YP_003357278.1| - 3.9e-16 58.8 0.1 3.9e-16 58.8 0.1 2.1 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|282164894|ref|YP_003357279.1| - 2.4e-26 91.4 1.4 3.6e-26 90.9 1.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Myb_DNA-bind_7 PF15963.5 gi|282164894|ref|YP_003357279.1| - 0.00019 21.3 0.3 0.0003 20.6 0.3 1.3 1 0 0 1 1 1 1 Myb DNA-binding like MecA_N PF05223.11 gi|282164894|ref|YP_003357279.1| - 0.046 14.0 0.2 0.23 11.7 0.0 1.9 2 0 0 2 2 2 0 NTF2-like N-terminal transpeptidase domain COMMD1_N PF17221.3 gi|282164894|ref|YP_003357279.1| - 0.099 12.9 0.1 0.15 12.4 0.1 1.2 1 0 0 1 1 1 0 COMMD1 N-terminal domain Citrate_synt PF00285.21 gi|282164894|ref|YP_003357279.1| - 0.11 11.5 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Ribosomal_L22 PF00237.19 gi|282164895|ref|YP_003357280.1| - 2.3e-25 88.8 0.2 2.7e-25 88.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e DUF5101 PF17031.5 gi|282164895|ref|YP_003357280.1| - 0.016 15.3 0.6 0.059 13.5 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF5101) DUF2316 PF10078.9 gi|282164895|ref|YP_003357280.1| - 0.096 12.9 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) DUF4953 PF16313.5 gi|282164895|ref|YP_003357280.1| - 0.12 11.6 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 Met-zincin Ribosomal_S3_C PF00189.20 gi|282164896|ref|YP_003357281.1| - 4.1e-24 84.9 0.7 9.8e-24 83.7 0.7 1.7 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|282164896|ref|YP_003357281.1| - 3.3e-16 58.9 0.0 6.8e-16 57.9 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|282164896|ref|YP_003357281.1| - 0.012 15.4 1.0 0.099 12.5 0.3 2.4 2 0 0 2 2 2 0 KH domain Ribosomal_L6 PF00347.23 gi|282164896|ref|YP_003357281.1| - 0.052 14.2 0.1 0.14 12.8 0.0 1.8 2 0 0 2 2 2 0 Ribosomal protein L6 KH_4 PF13083.6 gi|282164896|ref|YP_003357281.1| - 0.14 12.0 0.2 0.33 10.9 0.2 1.6 1 0 0 1 1 1 0 KH domain Ribosomal_L29 PF00831.23 gi|282164897|ref|YP_003357282.1| - 9.3e-20 70.4 2.1 1.1e-19 70.1 2.1 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein SUI1 PF01253.22 gi|282164898|ref|YP_003357283.1| - 9.2e-22 77.4 0.4 1.1e-21 77.1 0.4 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.15 gi|282164898|ref|YP_003357283.1| - 0.0046 16.7 0.5 0.0067 16.2 0.5 1.2 1 0 0 1 1 1 1 DTW domain Img2 PF05046.14 gi|282164898|ref|YP_003357283.1| - 0.014 15.7 0.1 0.017 15.4 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) UPF0086 PF01868.16 gi|282164899|ref|YP_003357284.1| - 2.9e-15 55.9 0.0 4.4e-15 55.4 0.0 1.2 1 1 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.20 gi|282164900|ref|YP_003357285.1| - 1.3e-29 102.0 2.4 1.7e-29 101.7 2.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|282164900|ref|YP_003357285.1| - 0.00034 20.9 0.1 0.00094 19.5 0.0 1.8 2 0 0 2 2 2 1 Ribosomal_S17 N-terminal DUF2535 PF10751.9 gi|282164900|ref|YP_003357285.1| - 0.0017 18.8 0.0 0.0051 17.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2535) Ribosomal_L14 PF00238.19 gi|282164901|ref|YP_003357286.1| - 2.3e-39 134.2 0.7 2.6e-39 134.1 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|282164902|ref|YP_003357287.1| - 5.9e-24 84.3 0.8 8.9e-24 83.8 0.8 1.3 1 1 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|282164902|ref|YP_003357287.1| - 7.3e-07 28.9 4.8 1.4e-06 28.1 4.8 1.5 1 0 0 1 1 1 1 KOW motif DUF4150 PF13665.6 gi|282164902|ref|YP_003357287.1| - 0.015 15.5 0.3 0.019 15.1 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4150) Ribosomal_S4e PF00900.20 gi|282164903|ref|YP_003357288.1| - 4.8e-21 74.5 0.2 1e-20 73.4 0.2 1.6 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|282164903|ref|YP_003357288.1| - 3.6e-15 55.8 3.2 5.5e-15 55.2 3.2 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|282164903|ref|YP_003357288.1| - 4.5e-06 26.3 0.1 8.1e-06 25.5 0.1 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|282164903|ref|YP_003357288.1| - 0.0017 18.2 2.7 0.0074 16.2 2.7 2.1 1 0 0 1 1 1 1 KOW motif Ribosomal_L5_C PF00673.21 gi|282164904|ref|YP_003357289.1| - 1.2e-25 89.5 0.0 2.1e-25 88.7 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|282164904|ref|YP_003357289.1| - 1.8e-19 69.8 0.5 3.2e-19 69.0 0.5 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|282164905|ref|YP_003357290.1| - 1.1e-13 50.7 4.3 1.1e-13 50.7 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DZR PF12773.7 gi|282164905|ref|YP_003357290.1| - 0.0085 16.1 0.1 0.011 15.7 0.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon DUF1451 PF07295.11 gi|282164905|ref|YP_003357290.1| - 0.0092 16.0 0.6 0.015 15.3 0.7 1.4 1 1 0 1 1 1 1 Zinc-ribbon containing domain C1_2 PF03107.16 gi|282164905|ref|YP_003357290.1| - 0.031 14.6 0.3 0.034 14.5 0.3 1.1 1 0 0 1 1 1 0 C1 domain Prim_Zn_Ribbon PF08273.12 gi|282164905|ref|YP_003357290.1| - 0.04 14.2 5.2 0.57 10.5 0.7 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF448 PF04296.13 gi|282164905|ref|YP_003357290.1| - 0.097 12.5 2.1 0.68 9.8 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF448) Zn_Tnp_IS1595 PF12760.7 gi|282164905|ref|YP_003357290.1| - 0.21 11.6 4.7 0.25 11.4 4.7 1.1 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-CCHC_2 PF13696.6 gi|282164905|ref|YP_003357290.1| - 3.6 7.5 9.0 9 6.2 2.0 2.2 2 0 0 2 2 2 0 Zinc knuckle Ribosomal_S8 PF00410.19 gi|282164906|ref|YP_003357291.1| - 1.1e-28 99.7 0.1 1.3e-28 99.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|282164907|ref|YP_003357292.1| - 4.7e-29 100.9 7.2 3.9e-17 62.7 0.8 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 TubC_N PF18563.1 gi|282164907|ref|YP_003357292.1| - 0.043 13.8 0.0 0.28 11.2 0.0 2.2 2 0 0 2 2 2 0 TubC N-terminal docking domain UN_NPL4 PF11543.8 gi|282164907|ref|YP_003357292.1| - 0.1 13.1 0.2 3.8 8.1 0.1 2.8 2 1 1 3 3 3 0 Nuclear pore localisation protein NPL4 PHA_gran_rgn PF09650.10 gi|282164907|ref|YP_003357292.1| - 0.13 12.5 0.2 0.43 10.9 0.1 2.0 2 1 0 2 2 2 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) Ribosomal_L32e PF01655.18 gi|282164908|ref|YP_003357293.1| - 9.6e-32 109.6 1.1 1.8e-31 108.7 1.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|282164909|ref|YP_003357294.1| - 2.8e-57 192.8 10.9 3.2e-57 192.6 10.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF3391 PF11871.8 gi|282164909|ref|YP_003357294.1| - 0.062 13.8 1.0 0.1 13.1 1.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3391) Ribosomal_L5e PF17144.4 gi|282164910|ref|YP_003357295.1| - 1.8e-32 112.6 2.1 7.1e-22 78.1 0.5 2.4 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|282164910|ref|YP_003357295.1| - 8e-06 26.2 0.3 1e-05 25.8 0.3 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5 PF00333.20 gi|282164911|ref|YP_003357296.1| - 2.1e-23 82.0 2.7 2.1e-23 82.0 2.7 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|282164911|ref|YP_003357296.1| - 3.7e-22 77.6 1.1 3.1e-21 74.6 0.2 2.2 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|282164912|ref|YP_003357297.1| - 2.7e-19 68.8 0.2 4e-19 68.2 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|282164913|ref|YP_003357298.1| - 2.6e-20 73.4 0.2 3.9e-20 72.8 0.2 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|282164914|ref|YP_003357299.1| - 7.9e-69 232.2 26.3 1e-68 231.8 26.3 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|282164914|ref|YP_003357299.1| - 1.7e-10 40.5 0.7 5.3e-10 39.0 0.7 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p ADK PF00406.22 gi|282164915|ref|YP_003357300.1| - 3.9e-59 199.1 0.0 4.6e-59 198.8 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|282164915|ref|YP_003357300.1| - 1.3e-30 106.6 0.0 2.3e-30 105.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|282164915|ref|YP_003357300.1| - 1.7e-16 59.9 2.2 3.2e-16 59.0 2.2 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|282164915|ref|YP_003357300.1| - 4.7e-09 36.9 0.1 1.8e-07 31.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain Hydin_ADK PF17213.3 gi|282164915|ref|YP_003357300.1| - 3.9e-06 27.3 0.0 0.0081 16.5 0.1 2.3 1 1 1 2 2 2 2 Hydin Adenylate kinase-like domain AAA_33 PF13671.6 gi|282164915|ref|YP_003357300.1| - 0.0013 18.9 0.0 0.0025 18.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|282164915|ref|YP_003357300.1| - 0.0027 17.4 0.0 0.0045 16.8 0.0 1.4 1 0 0 1 1 1 1 Cytidylate kinase AAA PF00004.29 gi|282164915|ref|YP_003357300.1| - 0.0059 17.0 0.0 0.018 15.5 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HypA PF01155.19 gi|282164915|ref|YP_003357300.1| - 0.0083 16.1 0.1 0.012 15.6 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Thymidylate_kin PF02223.17 gi|282164915|ref|YP_003357300.1| - 0.018 14.7 0.3 0.15 11.7 0.0 2.2 3 0 0 3 3 3 0 Thymidylate kinase AAA_28 PF13521.6 gi|282164915|ref|YP_003357300.1| - 0.023 14.9 0.0 0.042 14.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain DUF1451 PF07295.11 gi|282164915|ref|YP_003357300.1| - 0.027 14.5 0.0 0.043 13.8 0.0 1.5 1 0 0 1 1 1 0 Zinc-ribbon containing domain DZR PF12773.7 gi|282164915|ref|YP_003357300.1| - 0.039 14.0 0.5 0.069 13.2 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-RRN7 PF11781.8 gi|282164915|ref|YP_003357300.1| - 0.053 13.2 5.1 1.1 9.0 0.4 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 RuvB_N PF05496.12 gi|282164915|ref|YP_003357300.1| - 0.075 12.8 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Homez PF11569.8 gi|282164915|ref|YP_003357300.1| - 0.085 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Homeodomain leucine-zipper encoding, Homez zf-C4_Topoisom PF01396.19 gi|282164915|ref|YP_003357300.1| - 0.15 11.9 0.5 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF1272 PF06906.11 gi|282164915|ref|YP_003357300.1| - 0.16 12.0 0.7 0.48 10.5 0.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Zn_ribbon_recom PF13408.6 gi|282164915|ref|YP_003357300.1| - 3 8.4 5.8 16 6.1 4.2 2.4 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Rubredoxin_2 PF18073.1 gi|282164915|ref|YP_003357300.1| - 3.4 7.5 5.7 34 4.3 5.7 2.0 1 1 1 2 2 2 0 Rubredoxin metal binding domain EMC3_TMCO1 PF01956.16 gi|282164916|ref|YP_003357301.1| - 1.9e-41 141.6 11.1 1.9e-41 141.6 11.1 1.5 1 1 1 2 2 2 1 Integral membrane protein EMC3/TMCO1-like DUF2207 PF09972.9 gi|282164916|ref|YP_003357301.1| - 0.0017 17.2 2.7 0.0017 17.2 2.7 1.9 1 1 1 2 2 2 1 Predicted membrane protein (DUF2207) DUF996 PF06195.13 gi|282164916|ref|YP_003357301.1| - 0.39 11.0 8.9 0.33 11.3 2.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF996) Bac_export_2 PF01312.19 gi|282164916|ref|YP_003357301.1| - 0.4 9.8 5.1 0.097 11.9 1.5 1.7 1 1 1 2 2 2 0 FlhB HrpN YscU SpaS Family GTA_holin_3TM PF11351.8 gi|282164916|ref|YP_003357301.1| - 3 8.4 8.3 0.33 11.5 2.2 2.0 1 1 1 2 2 2 0 Holin of 3TMs, for gene-transfer release DUF3007 PF11460.8 gi|282164916|ref|YP_003357301.1| - 5 7.4 9.1 0.097 12.9 1.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3007) Cytidylate_kin2 PF13189.6 gi|282164917|ref|YP_003357302.1| - 2.7e-16 60.2 1.4 6.7e-15 55.7 1.4 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|282164917|ref|YP_003357302.1| - 9.7e-12 45.5 0.5 1.5e-11 44.9 0.5 1.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|282164917|ref|YP_003357302.1| - 2.6e-11 44.2 0.0 8.5e-11 42.5 0.0 1.8 1 1 1 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 gi|282164917|ref|YP_003357302.1| - 8.2e-08 32.2 3.5 0.0046 16.7 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|282164917|ref|YP_003357302.1| - 2.5e-06 27.7 0.7 6.8e-05 23.1 0.7 2.2 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|282164917|ref|YP_003357302.1| - 9.4e-05 22.6 0.1 0.00023 21.3 0.0 1.6 1 1 1 2 2 2 1 Adenylate kinase AAA PF00004.29 gi|282164917|ref|YP_003357302.1| - 0.00011 22.7 0.0 0.00018 22.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|282164917|ref|YP_003357302.1| - 0.00061 20.1 0.2 0.0018 18.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|282164917|ref|YP_003357302.1| - 0.0041 17.5 0.3 0.0056 17.1 0.3 1.4 1 1 0 1 1 1 1 AAA ATPase domain CoaE PF01121.20 gi|282164917|ref|YP_003357302.1| - 0.017 14.8 0.1 0.4 10.3 0.0 2.1 2 0 0 2 2 2 0 Dephospho-CoA kinase SKI PF01202.22 gi|282164917|ref|YP_003357302.1| - 0.047 13.8 0.2 5.9 7.0 0.0 2.2 2 0 0 2 2 2 0 Shikimate kinase AAA_22 PF13401.6 gi|282164917|ref|YP_003357302.1| - 0.054 13.8 0.2 0.084 13.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|282164917|ref|YP_003357302.1| - 0.058 12.8 0.1 0.1 12.1 0.1 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|282164917|ref|YP_003357302.1| - 0.084 12.1 1.0 0.3 10.3 1.0 2.0 1 1 0 1 1 1 0 Zeta toxin CPT PF07931.12 gi|282164917|ref|YP_003357302.1| - 0.095 12.5 1.2 0.85 9.4 1.2 2.2 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_5 PF07728.14 gi|282164917|ref|YP_003357302.1| - 0.1 12.6 0.0 0.27 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TruB_N PF01509.18 gi|282164918|ref|YP_003357303.1| - 1.3e-27 97.0 0.5 6.7e-16 59.0 0.1 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|282164918|ref|YP_003357303.1| - 2.4e-25 88.5 0.1 5.7e-25 87.3 0.0 1.7 2 0 0 2 2 2 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|282164918|ref|YP_003357303.1| - 9.4e-16 57.5 2.6 1.2e-15 57.2 1.0 2.0 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.12 gi|282164918|ref|YP_003357303.1| - 1.8e-13 50.3 0.0 5.3e-13 48.8 0.0 1.7 2 0 0 2 2 2 1 DKCLD (NUC011) domain Methyltransf_25 PF13649.6 gi|282164919|ref|YP_003357304.1| - 4.5e-12 46.5 0.0 6.8e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282164919|ref|YP_003357304.1| - 5.8e-09 35.9 0.1 7.1e-09 35.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282164919|ref|YP_003357304.1| - 2.2e-08 34.7 0.0 3.3e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282164919|ref|YP_003357304.1| - 1.8e-07 31.7 0.0 2.8e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282164919|ref|YP_003357304.1| - 0.0001 22.2 0.0 0.00011 22.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|282164919|ref|YP_003357304.1| - 0.0055 16.3 0.0 0.0072 15.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|282164919|ref|YP_003357304.1| - 0.021 14.2 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|282164919|ref|YP_003357304.1| - 0.031 13.6 0.0 0.042 13.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|282164919|ref|YP_003357304.1| - 0.052 12.8 0.0 0.071 12.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|282164919|ref|YP_003357304.1| - 0.054 13.4 0.0 0.094 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|282164919|ref|YP_003357304.1| - 0.071 12.7 0.0 0.096 12.3 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DUF3146 PF11344.8 gi|282164919|ref|YP_003357304.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3146) DUF5640 PF18692.1 gi|282164920|ref|YP_003357305.1| - 0.0034 17.4 0.4 0.037 14.1 0.4 2.2 1 1 0 1 1 1 1 Family of unknown function (DUF5640) TMIE PF16038.5 gi|282164920|ref|YP_003357305.1| - 0.21 11.5 1.3 0.29 11.0 1.3 1.2 1 0 0 1 1 1 0 TMIE protein Lipocalin_4 PF13648.6 gi|282164920|ref|YP_003357305.1| - 0.32 12.0 3.6 0.48 11.4 3.6 1.5 1 1 0 1 1 1 0 Lipocalin-like domain CW_binding_1 PF01473.20 gi|282164920|ref|YP_003357305.1| - 4.1 7.9 7.4 0.67 10.4 1.7 2.5 3 0 0 3 3 3 0 Putative cell wall binding repeat CAAD PF14159.6 gi|282164921|ref|YP_003357306.1| - 0.00014 21.7 1.6 0.00015 21.5 1.6 1.0 1 0 0 1 1 1 1 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase PhoU_div PF01865.16 gi|282164922|ref|YP_003357307.1| - 8.2e-45 152.8 0.9 9.3e-45 152.6 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|282164922|ref|YP_003357307.1| - 0.013 16.0 2.0 0.97 9.9 0.4 2.5 2 0 0 2 2 2 0 PhoU domain AAA_13 PF13166.6 gi|282164922|ref|YP_003357307.1| - 0.15 10.6 4.5 0.21 10.2 4.5 1.1 1 0 0 1 1 1 0 AAA domain BRE1 PF08647.11 gi|282164922|ref|YP_003357307.1| - 0.42 10.7 3.9 0.9 9.7 0.3 2.6 3 0 0 3 3 3 0 BRE1 E3 ubiquitin ligase PAS_9 PF13426.7 gi|282164923|ref|YP_003357308.1| - 3.7e-11 43.2 0.0 4.5e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|282164923|ref|YP_003357308.1| - 7.3e-11 42.3 0.0 8.9e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|282164923|ref|YP_003357308.1| - 8.2e-10 38.7 0.0 1e-09 38.4 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|282164923|ref|YP_003357308.1| - 1.2e-05 25.5 0.0 1.7e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|282164923|ref|YP_003357308.1| - 0.00012 22.0 0.0 0.00019 21.3 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|282164923|ref|YP_003357308.1| - 0.028 14.6 0.0 0.039 14.1 0.0 1.3 1 1 0 1 1 1 0 PAS fold GAF_2 PF13185.6 gi|282164924|ref|YP_003357309.1| - 4.2e-25 88.7 0.0 8.8e-25 87.6 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|282164924|ref|YP_003357309.1| - 1.2e-16 61.2 0.0 2.4e-16 60.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|282164924|ref|YP_003357309.1| - 0.0087 16.0 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.26 gi|282164924|ref|YP_003357309.1| - 0.012 16.2 0.0 0.028 15.0 0.0 1.6 1 0 0 1 1 1 0 GAF domain GAF_3 PF13492.6 gi|282164924|ref|YP_003357309.1| - 0.038 14.3 0.0 0.077 13.3 0.0 1.5 1 0 0 1 1 1 0 GAF domain Ribosomal_S13 PF00416.22 gi|282164925|ref|YP_003357310.1| - 4.5e-39 133.8 1.8 5.7e-39 133.4 1.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 TFIIIC_sub6 PF10419.9 gi|282164925|ref|YP_003357310.1| - 0.018 14.9 0.1 0.03 14.2 0.1 1.5 1 1 0 1 1 1 0 TFIIIC subunit triple barrel domain S4 PF01479.25 gi|282164926|ref|YP_003357311.1| - 5.7e-14 51.6 0.0 1e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|282164926|ref|YP_003357311.1| - 4.4e-05 24.3 1.2 7.6e-05 23.5 0.9 1.7 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain EppA_BapA PF07268.11 gi|282164926|ref|YP_003357311.1| - 0.0048 16.9 0.1 1.7 8.6 0.0 2.3 1 1 1 2 2 2 2 Exported protein precursor (EppA/BapA) Ribosomal_S11 PF00411.19 gi|282164927|ref|YP_003357312.1| - 5.2e-46 155.6 6.4 8.4e-46 154.9 6.4 1.3 1 1 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|282164927|ref|YP_003357312.1| - 0.012 15.3 0.5 0.015 15.0 0.5 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) Ribosomal_L18p PF00861.22 gi|282164927|ref|YP_003357312.1| - 0.028 14.8 0.4 0.039 14.3 0.4 1.2 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RNA_pol_A_bac PF01000.26 gi|282164928|ref|YP_003357313.1| - 5.8e-28 97.5 0.4 6.5e-27 94.1 0.0 2.4 2 1 1 3 3 3 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|282164928|ref|YP_003357313.1| - 5.9e-16 57.7 0.0 8.3e-16 57.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_9 PF13187.6 gi|282164928|ref|YP_003357313.1| - 1.2e-06 28.6 12.2 1.2e-06 28.6 12.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282164928|ref|YP_003357313.1| - 2.8e-05 24.1 12.3 2.8e-05 24.1 12.3 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282164928|ref|YP_003357313.1| - 7.8e-05 23.5 13.2 0.012 16.5 1.6 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|282164928|ref|YP_003357313.1| - 0.00015 22.2 12.8 0.0022 18.4 4.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282164928|ref|YP_003357313.1| - 0.00017 21.3 2.2 0.00017 21.3 2.2 3.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282164928|ref|YP_003357313.1| - 0.0003 21.3 12.1 0.0003 21.3 12.1 2.4 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282164928|ref|YP_003357313.1| - 0.002 18.3 4.6 0.0046 17.1 4.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282164928|ref|YP_003357313.1| - 0.0094 16.0 2.2 0.0094 16.0 2.2 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|282164928|ref|YP_003357313.1| - 0.049 14.1 3.7 0.049 14.1 3.7 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282164928|ref|YP_003357313.1| - 0.063 13.4 2.2 0.063 13.4 2.2 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|282164928|ref|YP_003357313.1| - 2.9 8.5 12.5 10 6.7 12.5 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|282164928|ref|YP_003357313.1| - 4.5 7.5 22.1 2.6 8.2 4.9 3.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain MFS_1 PF07690.16 gi|282164929|ref|YP_003357314.1| - 1.4e-50 172.2 60.8 2e-44 152.0 37.2 1.7 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|282164929|ref|YP_003357314.1| - 6.8e-12 45.0 9.3 6.8e-12 45.0 9.3 2.4 2 1 0 3 3 3 1 Sugar (and other) transporter MFS_2 PF13347.6 gi|282164929|ref|YP_003357314.1| - 3.2e-07 29.3 31.9 3.6e-05 22.5 12.5 2.9 2 1 1 3 3 3 2 MFS/sugar transport protein MFS_3 PF05977.13 gi|282164929|ref|YP_003357314.1| - 0.0005 18.6 16.6 0.0011 17.5 16.6 1.5 1 1 0 1 1 1 1 Transmembrane secretion effector OATP PF03137.20 gi|282164929|ref|YP_003357314.1| - 0.006 14.9 0.3 0.006 14.9 0.3 3.1 2 2 1 4 4 4 1 Organic Anion Transporter Polypeptide (OATP) family Pex24p PF06398.11 gi|282164929|ref|YP_003357314.1| - 1.7 7.5 10.1 2.6 7.0 0.2 2.7 2 1 0 2 2 2 0 Integral peroxisomal membrane peroxin Nitroreductase PF00881.24 gi|282164931|ref|YP_003357316.1| - 8e-31 107.4 0.0 9.4e-31 107.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|282164931|ref|YP_003357316.1| - 1e-13 51.4 0.0 2e-06 27.5 0.0 2.9 1 1 2 3 3 3 3 Putative TM nitroreductase CMD PF02627.20 gi|282164932|ref|YP_003357317.1| - 1.5e-14 53.8 0.8 1.9e-14 53.5 0.8 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF2179 PF10035.9 gi|282164932|ref|YP_003357317.1| - 0.038 13.7 0.0 0.13 12.1 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2179) PA26 PF04636.13 gi|282164932|ref|YP_003357317.1| - 0.086 11.7 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) MJ1316 PF04457.12 gi|282164933|ref|YP_003357318.1| - 6.8e-17 62.0 0.0 7.9e-17 61.8 0.0 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain PBP PF01161.20 gi|282164935|ref|YP_003357320.1| - 9.4e-37 126.3 0.0 1.1e-36 126.0 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein NAD_binding_2 PF03446.15 gi|282164936|ref|YP_003357321.1| - 8.9e-35 120.2 0.5 1.2e-34 119.7 0.5 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|282164936|ref|YP_003357321.1| - 2.3e-11 43.6 0.0 3.1e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|282164936|ref|YP_003357321.1| - 2.7e-08 33.4 0.1 4.2e-08 32.7 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|282164936|ref|YP_003357321.1| - 7.4e-05 23.2 0.0 0.00013 22.4 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Rossmann-like PF10727.9 gi|282164936|ref|YP_003357321.1| - 0.00021 21.2 0.1 0.00033 20.5 0.1 1.3 1 0 0 1 1 1 1 Rossmann-like domain 3HCDH_N PF02737.18 gi|282164936|ref|YP_003357321.1| - 0.0034 17.3 0.1 0.0085 16.0 0.1 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PCP PF02429.15 gi|282164936|ref|YP_003357321.1| - 0.032 14.5 0.1 0.047 14.0 0.1 1.2 1 0 0 1 1 1 0 Peridinin-chlorophyll A binding protein PPS_PS PF02006.16 gi|282164937|ref|YP_003357322.1| - 1.3e-77 259.3 0.7 1.6e-77 259.0 0.7 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase DUF2884 PF11101.8 gi|282164937|ref|YP_003357322.1| - 3.8e-05 23.3 0.1 0.00012 21.7 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2884) DUF883 PF05957.13 gi|282164938|ref|YP_003357323.1| - 4.1e-11 43.3 1.6 6.7e-11 42.7 1.6 1.4 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) Histone_HNS PF00816.21 gi|282164938|ref|YP_003357323.1| - 0.078 13.8 0.4 0.11 13.4 0.4 1.2 1 0 0 1 1 1 0 H-NS histone family DUF3584 PF12128.8 gi|282164938|ref|YP_003357323.1| - 0.12 9.8 1.5 0.14 9.7 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF2207 PF09972.9 gi|282164939|ref|YP_003357324.1| - 0.27 10.0 1.1 0.26 10.0 1.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Phage_holin_3_6 PF07332.11 gi|282164939|ref|YP_003357324.1| - 0.49 10.5 12.2 0.64 10.1 12.2 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF883 PF05957.13 gi|282164940|ref|YP_003357325.1| - 0.00094 19.7 0.0 0.0016 19.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF883) DUF111 PF01969.17 gi|282164941|ref|YP_003357326.1| - 5e-90 302.3 0.4 5.6e-90 302.1 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 APH PF01636.23 gi|282164941|ref|YP_003357326.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Phosphotransferase enzyme family NAD_synthase PF02540.17 gi|282164942|ref|YP_003357327.1| - 1.2e-06 27.9 0.0 2.3e-05 23.6 0.0 2.2 2 0 0 2 2 2 1 NAD synthase Asn_synthase PF00733.21 gi|282164942|ref|YP_003357327.1| - 2.4e-05 24.2 0.0 3.7e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|282164942|ref|YP_003357327.1| - 0.0008 18.3 0.1 0.005 15.7 0.2 2.2 2 1 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|282164942|ref|YP_003357327.1| - 0.0013 18.5 0.1 0.003 17.4 0.1 1.6 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.19 gi|282164942|ref|YP_003357327.1| - 0.0019 17.6 0.0 0.0083 15.5 0.0 1.7 2 0 0 2 2 2 1 Arginosuccinate synthase QueC PF06508.13 gi|282164942|ref|YP_003357327.1| - 0.0028 17.2 0.0 0.017 14.6 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|282164942|ref|YP_003357327.1| - 0.027 14.5 0.0 0.048 13.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family PDDEXK_1 PF12705.7 gi|282164943|ref|YP_003357328.1| - 1e-28 100.9 2.2 1.9e-28 100.1 2.2 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|282164943|ref|YP_003357328.1| - 0.001 19.2 0.3 0.05 13.7 0.2 2.6 2 1 0 2 2 2 1 Domain of unknown function DUF83 PET122 PF05476.11 gi|282164943|ref|YP_003357328.1| - 0.0053 16.1 0.3 0.014 14.7 0.1 1.8 2 0 0 2 2 2 1 PET122 DEAD_assoc PF08494.11 gi|282164944|ref|YP_003357329.1| - 1.1e-48 165.6 0.1 2.1e-48 164.6 0.1 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|282164944|ref|YP_003357329.1| - 1.1e-30 106.7 0.0 2.6e-30 105.5 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|282164944|ref|YP_003357329.1| - 2e-17 63.5 0.0 1.8e-16 60.4 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|282164944|ref|YP_003357329.1| - 6.8e-07 29.5 0.0 5.6e-06 26.5 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|282164944|ref|YP_003357329.1| - 0.011 16.0 0.0 0.15 12.4 0.0 2.8 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|282164944|ref|YP_003357329.1| - 0.014 15.1 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|282164944|ref|YP_003357329.1| - 0.016 15.6 0.0 0.051 13.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain Metallophos PF00149.28 gi|282164945|ref|YP_003357330.1| - 6.1e-05 23.6 0.8 0.012 16.1 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|282164945|ref|YP_003357330.1| - 0.011 16.0 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Thioredoxin PF00085.20 gi|282164946|ref|YP_003357331.1| - 3.6e-13 49.4 0.1 6.2e-13 48.6 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 gi|282164946|ref|YP_003357331.1| - 0.00012 21.6 0.2 0.00021 20.7 0.0 1.5 2 0 0 2 2 2 1 OST3 / OST6 family, transporter family Thioredoxin_6 PF13848.6 gi|282164946|ref|YP_003357331.1| - 0.00016 21.7 0.0 0.00019 21.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|282164946|ref|YP_003357331.1| - 0.00032 20.6 0.1 0.00042 20.2 0.1 1.3 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|282164946|ref|YP_003357331.1| - 0.0019 18.6 0.3 0.15 12.5 0.3 2.4 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|282164946|ref|YP_003357331.1| - 0.017 15.2 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_7 PF13899.6 gi|282164946|ref|YP_003357331.1| - 0.1 12.8 0.1 0.22 11.7 0.1 1.6 1 1 0 1 1 1 0 Thioredoxin-like DUF4148 PF13663.6 gi|282164946|ref|YP_003357331.1| - 0.12 12.6 1.4 0.22 11.7 1.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4148) DsbD PF02683.15 gi|282164947|ref|YP_003357332.1| - 2.6e-35 122.2 19.1 5.3e-35 121.2 19.1 1.4 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|282164947|ref|YP_003357332.1| - 2.1e-15 57.2 13.8 2.6e-15 56.9 13.8 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region UPF0016 PF01169.19 gi|282164947|ref|YP_003357332.1| - 0.0038 17.5 2.1 0.0038 17.5 2.1 2.9 3 1 0 3 3 3 1 Uncharacterized protein family UPF0016 DUF1418 PF07214.12 gi|282164947|ref|YP_003357332.1| - 0.21 11.4 0.1 0.21 11.4 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1418) CarboxypepD_reg PF13620.6 gi|282164948|ref|YP_003357333.1| - 0.00019 21.6 2.9 0.00019 21.6 2.9 1.9 2 1 1 3 3 3 1 Carboxypeptidase regulatory-like domain DEAD PF00270.29 gi|282164949|ref|YP_003357334.1| - 2.7e-28 98.9 0.0 8.4e-28 97.3 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase HRDC PF00570.23 gi|282164949|ref|YP_003357334.1| - 1.1e-19 70.2 0.2 1.5e-16 60.2 0.0 3.7 3 0 0 3 3 3 1 HRDC domain Sec63 PF02889.16 gi|282164949|ref|YP_003357334.1| - 8.6e-17 61.1 0.0 1.4e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.15 gi|282164949|ref|YP_003357334.1| - 1.1e-12 48.3 0.0 1.9e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|282164949|ref|YP_003357334.1| - 5.1e-10 39.7 0.0 4.3e-09 36.7 0.0 2.5 2 1 0 2 2 2 1 Helicase conserved C-terminal domain NucS PF01939.16 gi|282164949|ref|YP_003357334.1| - 1.9e-06 27.4 0.0 5.3e-06 25.9 0.0 1.7 1 0 0 1 1 1 1 Endonuclease NucS HHH_5 PF14520.6 gi|282164949|ref|YP_003357334.1| - 0.0018 18.9 1.4 0.0018 18.9 1.4 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|282164949|ref|YP_003357334.1| - 0.0063 16.7 0.1 0.074 13.3 0.0 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.9 gi|282164949|ref|YP_003357334.1| - 0.012 15.5 0.0 4.8 7.1 0.0 2.6 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda AAA_22 PF13401.6 gi|282164949|ref|YP_003357334.1| - 0.014 15.6 0.0 0.044 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|282164949|ref|YP_003357334.1| - 0.017 14.2 0.0 0.04 13.0 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein PhoH PF02562.16 gi|282164949|ref|YP_003357334.1| - 0.02 14.3 0.0 0.38 10.2 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein SNF2_N PF00176.23 gi|282164949|ref|YP_003357334.1| - 0.037 12.8 0.0 0.057 12.1 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_16 PF13191.6 gi|282164949|ref|YP_003357334.1| - 0.14 12.6 0.6 1.7 9.0 0.2 2.8 3 1 0 3 3 3 0 AAA ATPase domain Pyridox_ox_2 PF12900.7 gi|282164951|ref|YP_003357336.1| - 1.6e-23 83.3 0.0 1.8e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|282164951|ref|YP_003357336.1| - 1.7e-06 28.1 0.0 2.4e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase GATase_7 PF13537.6 gi|282164952|ref|YP_003357337.1| - 4.2e-23 81.6 0.0 7.2e-23 80.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|282164952|ref|YP_003357337.1| - 7.7e-22 77.9 0.0 1.5e-21 77.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|282164952|ref|YP_003357337.1| - 2.7e-07 29.8 0.0 4.5e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|282164952|ref|YP_003357337.1| - 7.5e-07 28.8 0.1 1.3e-06 28.0 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_2 PF00310.21 gi|282164952|ref|YP_003357337.1| - 0.02 13.6 0.2 0.6 8.8 0.0 2.8 1 1 1 3 3 3 0 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.19 gi|282164953|ref|YP_003357338.1| - 1.8e-21 76.0 10.5 2e-21 75.9 10.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e zf-piccolo PF05715.13 gi|282164953|ref|YP_003357338.1| - 0.26 11.5 5.6 2.5 8.3 5.6 2.0 1 1 0 1 1 1 0 Piccolo Zn-finger zf-Mss51 PF13824.6 gi|282164953|ref|YP_003357338.1| - 1.1 9.4 4.7 2.8 8.1 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 YhfH PF14149.6 gi|282164953|ref|YP_003357338.1| - 1.7 8.7 4.8 3.6 7.6 0.3 2.1 1 1 1 2 2 2 0 YhfH-like protein LSM PF01423.22 gi|282164954|ref|YP_003357339.1| - 4.1e-24 84.0 0.1 4.5e-24 83.9 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|282164954|ref|YP_003357339.1| - 0.00039 20.5 0.0 0.00039 20.5 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain PH_17 PF18012.1 gi|282164955|ref|YP_003357340.1| - 0.0055 16.4 0.0 0.17 11.7 0.0 2.1 2 0 0 2 2 2 2 PH domain ATP-synt_C PF00137.21 gi|282164956|ref|YP_003357341.1| - 2.6e-12 46.9 12.4 3.2e-12 46.6 12.4 1.1 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.18 gi|282164957|ref|YP_003357342.1| - 1.1e-14 54.3 9.0 6.8e-14 51.7 9.0 1.8 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DltD PF04914.12 gi|282164957|ref|YP_003357342.1| - 0.32 10.3 1.8 0.41 10.0 1.8 1.1 1 0 0 1 1 1 0 DltD protein DUF883 PF05957.13 gi|282164957|ref|YP_003357342.1| - 4.2 8.0 14.1 0.23 12.1 3.9 2.7 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) DUF4230 PF14014.6 gi|282164957|ref|YP_003357342.1| - 5.4 7.3 9.7 0.9 9.8 1.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4230) vATP-synt_AC39 PF01992.16 gi|282164958|ref|YP_003357343.1| - 3.5e-74 250.3 0.4 3.9e-74 250.2 0.4 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.17 gi|282164959|ref|YP_003357344.1| - 3.5e-17 62.5 0.0 4.2e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit LUD_dom PF02589.15 gi|282164959|ref|YP_003357344.1| - 0.023 14.4 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 LUD domain Phasin PF05597.11 gi|282164959|ref|YP_003357344.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.2 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) ATP-synt_ab PF00006.25 gi|282164960|ref|YP_003357345.1| - 1.4e-89 299.4 0.0 1.8e-89 299.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|282164960|ref|YP_003357345.1| - 3.1e-40 136.8 0.0 6.3e-40 135.8 0.0 1.6 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|282164960|ref|YP_003357345.1| - 1.2e-13 51.4 1.3 1.2e-13 51.4 1.3 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|282164960|ref|YP_003357345.1| - 0.1 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain RnfC_N PF13375.6 gi|282164960|ref|YP_003357345.1| - 0.15 12.0 0.1 4.4 7.3 0.0 2.7 3 0 0 3 3 3 0 RnfC Barrel sandwich hybrid domain ATP-synt_ab PF00006.25 gi|282164961|ref|YP_003357346.1| - 4.8e-64 215.9 0.0 6e-64 215.6 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|282164961|ref|YP_003357346.1| - 4.8e-10 39.8 0.7 1e-09 38.8 0.7 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|282164961|ref|YP_003357346.1| - 5.1e-07 29.7 0.4 1.4e-06 28.4 0.4 1.7 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_D PF01813.17 gi|282164962|ref|YP_003357347.1| - 2.5e-47 161.3 11.8 2.8e-47 161.1 11.8 1.0 1 0 0 1 1 1 1 ATP synthase subunit D V_ATPase_I PF01496.19 gi|282164963|ref|YP_003357348.1| - 1.4e-28 99.4 4.4 2.4e-16 58.9 0.0 3.4 3 1 0 3 3 3 2 V-type ATPase 116kDa subunit family PhoU_div PF01865.16 gi|282164963|ref|YP_003357348.1| - 0.025 13.9 1.9 0.045 13.1 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF47 PDE4_UCR PF18100.1 gi|282164963|ref|YP_003357348.1| - 0.17 12.5 0.1 0.32 11.6 0.1 1.4 1 0 0 1 1 1 0 Phosphodiesterase 4 upstream conserved regions (UCR) Nup54_57_C PF18570.1 gi|282164963|ref|YP_003357348.1| - 0.19 11.3 0.1 6.8 6.4 0.0 3.2 3 0 0 3 3 3 0 NUP57/Nup54 C-terminal domain TraL PF07178.11 gi|282164963|ref|YP_003357348.1| - 7.9 7.0 9.2 27 5.3 0.1 3.7 3 0 0 3 3 3 0 TraL protein V-ATPase_G_2 PF16999.5 gi|282164964|ref|YP_003357349.1| - 6e-32 110.2 14.2 6.8e-32 110.0 14.2 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|282164964|ref|YP_003357349.1| - 0.053 13.6 6.9 0.069 13.2 6.9 1.4 1 0 0 1 1 1 0 DivIVA protein ATP-synt_B PF00430.18 gi|282164964|ref|YP_003357349.1| - 2.2 8.4 14.7 4 7.5 14.6 1.6 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) PUA PF01472.20 gi|282164966|ref|YP_003357351.1| - 3.7e-19 68.5 2.6 6.6e-19 67.7 2.6 1.4 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|282164966|ref|YP_003357351.1| - 2.1e-08 34.3 0.1 3.7e-08 33.6 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|282164966|ref|YP_003357351.1| - 0.00077 19.7 0.2 0.0017 18.6 0.2 1.6 1 0 0 1 1 1 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|282164966|ref|YP_003357351.1| - 0.00082 20.0 0.0 0.0019 18.9 0.0 1.6 1 1 0 1 1 1 1 Pre-PUA-like domain SepF PF04472.12 gi|282164967|ref|YP_003357352.1| - 8.3e-11 42.0 0.3 1.3e-10 41.4 0.3 1.3 1 0 0 1 1 1 1 Cell division protein SepF Transposase_31 PF04754.12 gi|282164967|ref|YP_003357352.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative transposase, YhgA-like zf-ZPR1 PF03367.13 gi|282164968|ref|YP_003357353.1| - 2.1e-32 112.2 0.1 2.5e-32 111.9 0.1 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|282164968|ref|YP_003357353.1| - 0.78 10.2 5.7 2 8.8 5.7 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar HEAT_2 PF13646.6 gi|282164969|ref|YP_003357354.1| - 0.017 15.5 1.2 0.56 10.6 0.0 3.3 3 2 1 4 4 4 0 HEAT repeats Cnd1 PF12717.7 gi|282164969|ref|YP_003357354.1| - 0.023 14.8 0.2 3.2 7.8 0.0 2.7 1 1 1 2 2 2 0 non-SMC mitotic condensation complex subunit 1 RuvC PF02075.17 gi|282164970|ref|YP_003357355.1| - 4.2e-54 182.5 0.2 4.8e-54 182.3 0.2 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC RuvA_N PF01330.21 gi|282164971|ref|YP_003357356.1| - 3.8e-18 65.3 1.1 1.3e-17 63.6 0.2 2.3 2 1 1 3 3 3 1 RuvA N terminal domain HHH_5 PF14520.6 gi|282164971|ref|YP_003357356.1| - 8e-18 64.8 0.8 2e-17 63.5 0.8 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain RuvA_C PF07499.13 gi|282164971|ref|YP_003357356.1| - 9.1e-12 45.2 0.9 9.1e-12 45.2 0.9 1.8 2 0 0 2 2 2 1 RuvA, C-terminal domain HHH PF00633.23 gi|282164971|ref|YP_003357356.1| - 2e-06 27.4 0.3 0.1 12.5 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|282164971|ref|YP_003357356.1| - 0.00023 21.4 0.2 0.62 10.4 0.0 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix motif Transposase_20 PF02371.16 gi|282164971|ref|YP_003357356.1| - 0.0023 18.2 0.2 1.2 9.5 0.1 2.4 2 0 0 2 2 2 2 Transposase IS116/IS110/IS902 family HHH_2 PF12826.7 gi|282164971|ref|YP_003357356.1| - 0.0052 16.9 0.1 2.1 8.5 0.0 2.9 2 1 1 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|282164971|ref|YP_003357356.1| - 0.011 15.5 0.0 6.6 6.7 0.0 2.5 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda RuvB_N PF05496.12 gi|282164972|ref|YP_003357357.1| - 1.2e-84 281.8 0.0 2e-84 281.2 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_4 PF17864.1 gi|282164972|ref|YP_003357357.1| - 3.7e-32 109.9 1.2 7.3e-32 108.9 0.6 1.9 2 0 0 2 2 1 1 RuvB AAA lid domain RuvB_C PF05491.13 gi|282164972|ref|YP_003357357.1| - 4e-25 87.5 0.0 8e-25 86.5 0.0 1.5 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain AAA PF00004.29 gi|282164972|ref|YP_003357357.1| - 4.8e-21 75.6 0.0 1.1e-20 74.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|282164972|ref|YP_003357357.1| - 4e-10 39.8 0.0 1.8e-08 34.5 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|282164972|ref|YP_003357357.1| - 3.1e-06 26.6 0.4 1.9e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_16 PF13191.6 gi|282164972|ref|YP_003357357.1| - 2.3e-05 24.9 0.1 0.00038 20.9 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain DUF815 PF05673.13 gi|282164972|ref|YP_003357357.1| - 8.3e-05 21.9 0.0 0.0085 15.3 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|282164972|ref|YP_003357357.1| - 0.00011 21.7 0.2 0.033 13.6 0.0 2.5 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|282164972|ref|YP_003357357.1| - 0.00021 21.0 0.0 0.43 10.3 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|282164972|ref|YP_003357357.1| - 0.00032 20.6 0.0 0.007 16.2 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|282164972|ref|YP_003357357.1| - 0.00065 19.7 0.0 0.00095 19.1 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RNA_helicase PF00910.22 gi|282164972|ref|YP_003357357.1| - 0.00068 20.0 0.0 0.0012 19.2 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_14 PF13173.6 gi|282164972|ref|YP_003357357.1| - 0.00074 19.6 0.0 0.0021 18.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|282164972|ref|YP_003357357.1| - 0.00082 19.4 0.0 0.0016 18.5 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|282164972|ref|YP_003357357.1| - 0.00088 19.2 0.6 0.067 13.1 0.0 2.4 1 1 1 2 2 2 1 NTPase AAA_18 PF13238.6 gi|282164972|ref|YP_003357357.1| - 0.00097 19.7 0.7 0.011 16.3 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_22 PF13401.6 gi|282164972|ref|YP_003357357.1| - 0.0017 18.7 1.0 0.18 12.1 0.0 2.9 2 2 2 4 4 3 1 AAA domain Sigma54_activ_2 PF14532.6 gi|282164972|ref|YP_003357357.1| - 0.0064 16.6 0.0 0.0098 16.0 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain NB-ARC PF00931.22 gi|282164972|ref|YP_003357357.1| - 0.0082 15.3 0.0 0.047 12.9 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain AAA_24 PF13479.6 gi|282164972|ref|YP_003357357.1| - 0.011 15.5 0.1 0.03 14.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain MCM PF00493.23 gi|282164972|ref|YP_003357357.1| - 0.015 14.4 0.1 0.96 8.5 0.1 2.3 1 1 0 1 1 1 0 MCM P-loop domain AAA_33 PF13671.6 gi|282164972|ref|YP_003357357.1| - 0.016 15.3 0.0 0.057 13.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|282164972|ref|YP_003357357.1| - 0.024 14.2 0.2 0.29 10.7 0.0 2.3 1 1 1 2 2 2 0 AAA domain NACHT PF05729.12 gi|282164972|ref|YP_003357357.1| - 0.024 14.6 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Bac_DnaA PF00308.18 gi|282164972|ref|YP_003357357.1| - 0.031 14.1 0.1 0.26 11.1 0.0 2.3 3 0 0 3 3 3 0 Bacterial dnaA protein ResIII PF04851.15 gi|282164972|ref|YP_003357357.1| - 0.034 14.2 0.0 3.9 7.4 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Parvo_NS1 PF01057.17 gi|282164972|ref|YP_003357357.1| - 0.053 12.6 0.0 0.095 11.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.27 gi|282164972|ref|YP_003357357.1| - 0.084 13.4 0.0 0.18 12.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter T2SSE PF00437.20 gi|282164972|ref|YP_003357357.1| - 0.089 11.8 0.4 0.96 8.4 0.0 2.6 2 1 1 3 3 3 0 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|282164972|ref|YP_003357357.1| - 0.091 12.5 0.1 0.25 11.1 0.1 1.8 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.6 gi|282164972|ref|YP_003357357.1| - 0.099 13.1 0.0 0.27 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|282164972|ref|YP_003357357.1| - 0.13 12.6 0.3 0.87 9.9 0.0 2.2 1 1 0 2 2 2 0 AAA domain DUF3095 PF11294.8 gi|282164973|ref|YP_003357358.1| - 0.00032 19.9 0.0 0.00039 19.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3095) 7TM_GPCR_Srv PF10323.9 gi|282164973|ref|YP_003357358.1| - 0.017 14.5 0.4 0.02 14.2 0.4 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srv T2SSF PF00482.23 gi|282164973|ref|YP_003357358.1| - 0.045 13.7 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F GPI2 PF06432.11 gi|282164973|ref|YP_003357358.1| - 0.049 13.1 0.1 0.058 12.8 0.1 1.1 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF4446 PF14584.6 gi|282164973|ref|YP_003357358.1| - 0.055 13.4 1.5 0.061 13.3 0.4 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Lectin_N PF03954.14 gi|282164973|ref|YP_003357358.1| - 0.056 13.2 0.2 0.084 12.6 0.2 1.3 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain Shugoshin_N PF07558.11 gi|282164973|ref|YP_003357358.1| - 0.062 13.2 3.6 0.32 10.9 3.7 2.1 1 1 1 2 2 2 0 Shugoshin N-terminal coiled-coil region GD_N PF16030.5 gi|282164973|ref|YP_003357358.1| - 0.11 12.8 0.6 0.17 12.2 0.6 1.3 1 0 0 1 1 1 0 Serine protease gd N-terminus TSC22 PF01166.18 gi|282164973|ref|YP_003357358.1| - 0.14 12.5 1.2 16 5.9 0.2 2.5 1 1 1 2 2 2 0 TSC-22/dip/bun family DUF4023 PF13215.6 gi|282164973|ref|YP_003357358.1| - 0.24 11.4 1.4 0.48 10.5 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4023) CBS PF00571.28 gi|282164974|ref|YP_003357359.1| - 2.1e-40 137.0 12.4 4e-13 49.6 0.7 4.2 4 0 0 4 4 4 4 CBS domain NMT1_3 PF16868.5 gi|282164974|ref|YP_003357359.1| - 0.1 12.0 0.1 0.17 11.3 0.1 1.3 1 0 0 1 1 1 0 NMT1-like family Mrr_cat PF04471.12 gi|282164975|ref|YP_003357360.1| - 8e-05 22.6 0.0 0.00013 22.0 0.0 1.6 1 1 0 1 1 1 1 Restriction endonuclease DUF4878 PF12870.7 gi|282164976|ref|YP_003357361.1| - 0.00021 21.5 0.2 0.00041 20.6 0.2 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4878) DUF4829 PF16111.5 gi|282164976|ref|YP_003357361.1| - 0.023 15.5 1.8 0.047 14.5 1.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4829) Cpn60_TCP1 PF00118.24 gi|282164977|ref|YP_003357362.1| - 3.1e-166 553.8 19.3 3.5e-166 553.6 19.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family ZnuA PF01297.17 gi|282164977|ref|YP_003357362.1| - 0.091 12.1 0.1 0.19 11.1 0.1 1.5 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic DUF521 PF04412.13 gi|282164978|ref|YP_003357363.1| - 9.7e-159 528.4 0.0 1.6e-158 527.6 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF521) CoA_binding_2 PF13380.6 gi|282164978|ref|YP_003357363.1| - 0.00081 19.9 0.0 0.0019 18.7 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain DUF126 PF01989.16 gi|282164979|ref|YP_003357364.1| - 1.1e-36 124.4 0.8 1.9e-36 123.7 0.8 1.4 1 0 0 1 1 1 1 Aconitase X swivel domain GP11 PF08677.10 gi|282164979|ref|YP_003357364.1| - 0.063 12.7 0.4 0.12 11.8 0.3 1.4 1 1 1 2 2 2 0 GP11 baseplate wedge protein Peptidase_M50 PF02163.22 gi|282164980|ref|YP_003357365.1| - 1.9e-10 40.5 10.1 8.6e-07 28.5 0.3 2.7 1 1 1 2 2 2 2 Peptidase family M50 CTP_transf_like PF01467.26 gi|282164981|ref|YP_003357366.1| - 2.6e-19 69.8 0.0 5.4e-19 68.8 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase-like ATP-sulfurylase PF01747.17 gi|282164981|ref|YP_003357366.1| - 0.007 15.9 0.0 1.1 8.7 0.0 2.2 2 0 0 2 2 2 2 ATP-sulfurylase FAD_syn PF06574.12 gi|282164981|ref|YP_003357366.1| - 0.023 14.6 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 FAD synthetase Citrate_ly_lig PF08218.11 gi|282164981|ref|YP_003357366.1| - 0.058 13.1 0.0 0.19 11.4 0.0 1.8 2 0 0 2 2 2 0 Citrate lyase ligase C-terminal domain HIGH_NTase1 PF05636.11 gi|282164981|ref|YP_003357366.1| - 0.08 12.1 0.0 1.8 7.7 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Zeta_toxin PF06414.12 gi|282164981|ref|YP_003357366.1| - 0.082 12.2 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin DUF2229 PF09989.9 gi|282164981|ref|YP_003357366.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) CDP-OH_P_transf PF01066.21 gi|282164982|ref|YP_003357367.1| - 1.3e-13 51.5 3.0 1.3e-13 51.5 3.0 2.2 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PHP PF02811.19 gi|282164983|ref|YP_003357368.1| - 9.2e-12 45.6 0.0 4e-11 43.5 0.0 1.8 1 1 1 2 2 2 1 PHP domain PHP_C PF13263.6 gi|282164983|ref|YP_003357368.1| - 0.004 16.9 0.0 0.0087 15.8 0.0 1.5 1 0 0 1 1 1 1 PHP-associated RNase_P_p30 PF01876.16 gi|282164983|ref|YP_003357368.1| - 0.022 14.2 0.0 0.057 12.9 0.0 1.6 1 1 0 1 1 1 0 RNase P subunit p30 TetR_N PF00440.23 gi|282164984|ref|YP_003357369.1| - 6.8e-20 70.6 0.4 1.3e-19 69.7 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_33 PF13305.6 gi|282164984|ref|YP_003357369.1| - 0.0068 17.1 0.0 0.034 14.9 0.0 2.0 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain Amidohydro_3 PF07969.11 gi|282164984|ref|YP_003357369.1| - 0.047 13.1 0.0 0.1 12.0 0.0 1.3 1 1 0 1 1 1 0 Amidohydrolase family HTH_Tnp_1_2 PF13022.6 gi|282164984|ref|YP_003357369.1| - 0.11 12.7 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_7 PF02796.15 gi|282164984|ref|YP_003357369.1| - 0.11 12.6 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_3 PF01381.22 gi|282164984|ref|YP_003357369.1| - 0.29 11.2 1.1 1.9 8.6 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix CCG PF02754.16 gi|282164985|ref|YP_003357370.1| - 3.7e-22 78.3 7.2 5.3e-16 58.6 0.1 2.9 3 0 0 3 3 3 2 Cysteine-rich domain TFIIS_C PF01096.18 gi|282164986|ref|YP_003357371.1| - 1.6e-18 66.3 11.3 6.2e-18 64.4 6.6 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|282164986|ref|YP_003357371.1| - 6.1e-05 22.9 4.8 0.00024 21.0 1.0 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|282164986|ref|YP_003357371.1| - 0.0004 20.2 2.3 0.039 13.9 1.0 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|282164986|ref|YP_003357371.1| - 0.0024 17.8 2.0 0.2 11.7 2.1 2.1 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|282164986|ref|YP_003357371.1| - 0.0058 16.0 7.4 0.094 12.2 0.4 3.1 3 0 0 3 3 3 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|282164986|ref|YP_003357371.1| - 0.0082 16.0 9.2 0.68 9.9 0.0 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zf-ZPR1 PF03367.13 gi|282164986|ref|YP_003357371.1| - 0.013 15.4 0.3 0.23 11.3 0.1 2.0 2 0 0 2 2 2 0 ZPR1 zinc-finger domain DNA_RNApol_7kD PF03604.13 gi|282164986|ref|YP_003357371.1| - 0.018 14.7 5.8 1.5 8.6 0.1 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-IS66 PF13005.7 gi|282164986|ref|YP_003357371.1| - 0.049 14.0 3.1 4.1 7.9 0.0 3.1 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Ribosomal_S27e PF01667.17 gi|282164986|ref|YP_003357371.1| - 0.059 13.1 2.9 4.5 7.0 0.1 3.0 3 0 0 3 3 3 0 Ribosomal protein S27 zinc_ribbon_4 PF13717.6 gi|282164986|ref|YP_003357371.1| - 0.066 13.1 8.9 1.4 8.9 0.8 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|282164986|ref|YP_003357371.1| - 0.067 13.1 3.8 15 5.6 0.1 3.1 3 0 0 3 3 3 0 SprT-like zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|282164986|ref|YP_003357371.1| - 0.13 12.0 4.6 3.7 7.4 0.0 2.9 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-AN1 PF01428.16 gi|282164986|ref|YP_003357371.1| - 0.15 12.3 4.1 8.9 6.6 0.1 3.0 3 0 0 3 3 3 0 AN1-like Zinc finger zinc_ribbon_2 PF13240.6 gi|282164986|ref|YP_003357371.1| - 0.17 11.7 13.6 3 7.7 1.3 3.2 3 0 0 3 3 3 0 zinc-ribbon domain YhfH PF14149.6 gi|282164986|ref|YP_003357371.1| - 0.18 11.8 8.0 6.7 6.8 0.0 3.3 3 0 0 3 3 3 0 YhfH-like protein Rubredoxin_2 PF18073.1 gi|282164986|ref|YP_003357371.1| - 0.28 10.9 12.3 4.9 7.0 0.7 3.2 3 0 0 3 3 3 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|282164986|ref|YP_003357371.1| - 0.33 10.5 7.0 0.37 10.3 2.2 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding Baculo_LEF5_C PF11792.8 gi|282164986|ref|YP_003357371.1| - 0.39 10.4 4.8 1.8 8.3 0.5 2.5 2 0 0 2 2 2 0 Baculoviridae late expression factor 5 C-terminal domain zf-Mss51 PF13824.6 gi|282164986|ref|YP_003357371.1| - 0.4 10.8 6.5 30 4.8 0.0 3.2 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-H2C2_2 PF13465.6 gi|282164986|ref|YP_003357371.1| - 0.42 11.1 4.5 21 5.7 0.1 3.1 3 0 0 3 3 3 0 Zinc-finger double domain DUF35_N PF12172.8 gi|282164986|ref|YP_003357371.1| - 0.5 10.3 8.2 9.2 6.3 0.9 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.6 gi|282164986|ref|YP_003357371.1| - 0.56 10.2 5.5 2.1 8.3 1.7 2.9 2 1 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|282164986|ref|YP_003357371.1| - 0.6 10.3 14.0 8.7 6.6 0.5 3.2 2 1 0 2 2 2 0 Zinc ribbon domain zf-C2H2_4 PF13894.6 gi|282164986|ref|YP_003357371.1| - 0.61 11.1 8.1 2.2 9.3 0.5 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger UPF0547 PF10571.9 gi|282164986|ref|YP_003357371.1| - 0.74 9.9 6.8 8.4 6.6 0.4 2.9 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Desulfoferrod_N PF06397.12 gi|282164986|ref|YP_003357371.1| - 1.2 8.8 6.2 12 5.7 0.1 3.1 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-ISL3 PF14690.6 gi|282164986|ref|YP_003357371.1| - 3.7 8.3 8.8 7.5 7.3 2.0 3.0 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2 PF00096.26 gi|282164986|ref|YP_003357371.1| - 4.9 7.8 10.0 13 6.5 0.4 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf_UBZ PF18439.1 gi|282164986|ref|YP_003357371.1| - 5.2 6.7 7.9 20 4.9 0.3 3.0 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-3CxxC_2 PF17180.4 gi|282164986|ref|YP_003357371.1| - 5.5 7.8 12.5 3.4 8.5 1.6 3.0 2 1 1 3 3 3 0 Zinc-binding domain zf-tcix PF14952.6 gi|282164986|ref|YP_003357371.1| - 5.9 6.6 11.6 13 5.5 0.5 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-TFIIB PF13453.6 gi|282164986|ref|YP_003357371.1| - 6.7 6.1 9.5 1.6 8.1 4.5 2.4 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-C2H2_11 PF16622.5 gi|282164986|ref|YP_003357371.1| - 7.8 6.4 9.1 18 5.2 0.2 3.0 3 0 0 3 3 3 0 zinc-finger C2H2-type PCNA_N PF00705.18 gi|282164987|ref|YP_003357372.1| - 1.4e-14 53.9 0.3 2.9e-14 52.9 0.3 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|282164987|ref|YP_003357372.1| - 4.5e-11 43.0 0.0 3.5e-09 36.9 0.0 2.7 3 1 0 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|282164987|ref|YP_003357372.1| - 2.4e-05 23.6 0.1 0.0034 16.5 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|282164987|ref|YP_003357372.1| - 0.0072 15.8 0.0 0.014 14.8 0.0 1.4 1 1 0 1 1 1 1 Rad9 DNA_pol3_beta PF00712.19 gi|282164987|ref|YP_003357372.1| - 0.01 16.0 0.1 0.11 12.7 0.1 2.4 2 0 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain KGG PF10685.9 gi|282164988|ref|YP_003357373.1| - 2.1e-06 27.8 11.9 0.0066 16.7 0.1 3.3 1 1 2 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282164988|ref|YP_003357373.1| - 0.062 13.8 7.5 0.77 10.2 7.3 2.1 1 1 0 1 1 1 0 Small hydrophilic plant seed protein SASP PF00269.20 gi|282164988|ref|YP_003357373.1| - 0.2 11.7 3.8 3.6 7.7 0.4 2.1 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type DNA_primase_lrg PF04104.14 gi|282164989|ref|YP_003357374.1| - 2e-31 109.4 0.0 5e-31 108.1 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Peptidase_M29 PF02073.15 gi|282164991|ref|YP_003357376.1| - 1.4e-09 37.3 0.1 1.8e-07 30.3 0.1 2.5 2 1 0 2 2 2 2 Thermophilic metalloprotease (M29) DnaJ_CXXCXGXG PF00684.19 gi|282164992|ref|YP_003357377.1| - 1.6e-06 28.4 16.9 1.6e-06 28.4 16.9 2.5 1 1 1 2 2 2 2 DnaJ central domain DHH PF01368.20 gi|282164992|ref|YP_003357377.1| - 2.5e-06 27.7 0.4 5.5e-06 26.6 0.4 1.5 1 0 0 1 1 1 1 DHH family S1 PF00575.23 gi|282164992|ref|YP_003357377.1| - 4.2e-05 23.8 0.0 0.00012 22.4 0.0 1.8 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti-codon PF01336.25 gi|282164992|ref|YP_003357377.1| - 5.9e-05 23.0 0.0 0.00028 20.8 0.0 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|282164992|ref|YP_003357377.1| - 0.00074 19.7 0.0 0.0027 17.9 0.0 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Anti-TRAP PF15777.5 gi|282164992|ref|YP_003357377.1| - 0.0025 17.7 3.3 0.0025 17.7 3.3 3.8 1 1 2 3 3 3 1 Tryptophan RNA-binding attenuator protein inhibitory protein DZR PF12773.7 gi|282164992|ref|YP_003357377.1| - 0.0044 17.0 15.1 0.1 12.6 13.0 2.4 1 1 1 2 2 2 2 Double zinc ribbon S1_2 PF13509.6 gi|282164992|ref|YP_003357377.1| - 0.0048 16.9 0.1 0.01 15.9 0.1 1.5 1 0 0 1 1 1 1 S1 domain CheF-arch PF04283.12 gi|282164992|ref|YP_003357377.1| - 0.053 13.3 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Chemotaxis signal transduction system protein F from archaea PolC_DP2 PF03833.13 gi|282164992|ref|YP_003357377.1| - 0.33 8.7 3.6 0.48 8.2 3.6 1.2 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF2116 PF09889.9 gi|282164992|ref|YP_003357377.1| - 0.47 10.5 2.2 1.1 9.3 2.2 1.5 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Zn-ribbon_8 PF09723.10 gi|282164993|ref|YP_003357378.1| - 0.019 15.0 0.2 0.03 14.4 0.2 1.3 1 0 0 1 1 1 0 Zinc ribbon domain Yip1 PF04893.17 gi|282164994|ref|YP_003357379.1| - 0.0026 17.5 1.8 0.0035 17.1 1.8 1.1 1 0 0 1 1 1 1 Yip1 domain Gaa1 PF04114.14 gi|282164994|ref|YP_003357379.1| - 0.02 13.9 0.3 0.022 13.8 0.3 1.0 1 0 0 1 1 1 0 Gaa1-like, GPI transamidase component DUF2975 PF11188.8 gi|282164994|ref|YP_003357379.1| - 0.2 11.5 5.0 0.29 11.0 5.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) Exonuc_V_gamma PF04257.14 gi|282164995|ref|YP_003357380.1| - 0.025 12.8 0.3 0.028 12.7 0.3 1.0 1 0 0 1 1 1 0 Exodeoxyribonuclease V, gamma subunit TTRAP PF14203.6 gi|282164995|ref|YP_003357380.1| - 0.1 12.6 0.1 18 5.4 0.0 2.4 1 1 1 2 2 2 0 Putative tranposon-transfer assisting protein BROMI PF14961.6 gi|282164995|ref|YP_003357380.1| - 0.15 9.5 0.0 0.15 9.5 0.0 1.1 1 0 0 1 1 1 0 Broad-minded protein MtN3_slv PF03083.16 gi|282164997|ref|YP_003357382.1| - 4.6e-08 33.0 1.2 5.1e-08 32.8 1.2 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PQ-loop PF04193.14 gi|282164997|ref|YP_003357382.1| - 1.7e-07 30.9 1.2 2.7e-07 30.2 0.1 1.8 1 1 0 2 2 2 1 PQ loop repeat LAB_N PF07578.11 gi|282164997|ref|YP_003357382.1| - 0.0028 17.7 0.5 0.0034 17.4 0.5 1.2 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain DUF368 PF04018.13 gi|282164997|ref|YP_003357382.1| - 0.036 13.7 3.6 0.039 13.5 3.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF368) CrgA PF06781.12 gi|282164997|ref|YP_003357382.1| - 0.26 11.4 1.8 0.28 11.3 1.5 1.3 1 1 0 1 1 1 0 Cell division protein CrgA Hemerythrin PF01814.23 gi|282164998|ref|YP_003357383.1| - 3.3e-15 56.9 0.8 6.5e-15 55.9 0.4 1.7 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain YdjM PF04307.14 gi|282164999|ref|YP_003357384.1| - 7.8e-14 51.3 9.8 1.1e-13 50.8 9.8 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Topoisom_bac PF01131.20 gi|282165000|ref|YP_003357385.1| - 7.2e-116 387.6 0.0 9.5e-116 387.2 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|282165000|ref|YP_003357385.1| - 6.3e-15 55.3 0.0 1.1e-13 51.3 0.0 2.4 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|282165000|ref|YP_003357385.1| - 1.6e-12 47.0 2.5 1.6e-12 47.0 2.5 2.3 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.16 gi|282165000|ref|YP_003357385.1| - 0.092 12.8 4.7 0.1 12.6 1.4 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain LexA_DNA_bind PF01726.16 gi|282165000|ref|YP_003357385.1| - 0.12 12.2 0.0 0.66 9.8 0.0 2.3 2 0 0 2 2 2 0 LexA DNA binding domain Zn-ribbon_8 PF09723.10 gi|282165000|ref|YP_003357385.1| - 0.14 12.3 3.6 4.5 7.5 0.1 2.7 2 0 0 2 2 2 0 Zinc ribbon domain ADK_lid PF05191.14 gi|282165000|ref|YP_003357385.1| - 0.15 12.1 0.6 2.7 8.1 0.1 3.2 4 0 0 4 4 4 0 Adenylate kinase, active site lid Ogr_Delta PF04606.12 gi|282165000|ref|YP_003357385.1| - 2.6 8.1 6.2 0.31 11.0 0.8 2.3 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger Lar_restr_allev PF14354.6 gi|282165000|ref|YP_003357385.1| - 3.7 8.0 6.8 0.6 10.5 1.6 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar DUF3060 PF11259.8 gi|282165001|ref|YP_003357386.1| - 0.045 13.4 0.1 0.091 12.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3060) PadR PF03551.14 gi|282165002|ref|YP_003357387.1| - 1.2e-16 60.4 0.7 2.1e-16 59.6 0.1 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|282165002|ref|YP_003357387.1| - 0.00013 22.1 0.1 0.00024 21.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain RTP PF02334.16 gi|282165002|ref|YP_003357387.1| - 0.00021 21.9 0.3 0.00046 20.8 0.0 1.7 2 1 0 2 2 2 1 Replication terminator protein HxlR PF01638.17 gi|282165002|ref|YP_003357387.1| - 0.00058 19.6 0.0 0.0025 17.6 0.0 1.9 2 0 0 2 2 2 1 HxlR-like helix-turn-helix AphA_like PF14557.6 gi|282165002|ref|YP_003357387.1| - 0.0031 17.3 0.0 0.0038 17.0 0.0 1.2 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator Replic_Relax PF13814.6 gi|282165002|ref|YP_003357387.1| - 0.032 14.3 0.0 0.049 13.7 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation Methyltransf_7 PF03492.15 gi|282165002|ref|YP_003357387.1| - 0.034 13.4 0.0 0.68 9.1 0.0 2.0 2 0 0 2 2 2 0 SAM dependent carboxyl methyltransferase MacB_PCD PF12704.7 gi|282165003|ref|YP_003357388.1| - 1.3e-12 48.5 1.5 1.3e-12 48.5 1.5 2.4 3 1 1 4 4 4 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|282165003|ref|YP_003357388.1| - 8.1e-09 35.8 17.9 1.2e-08 35.3 9.5 3.7 3 1 0 3 3 3 1 FtsX-like permease family DUF2207 PF09972.9 gi|282165003|ref|YP_003357388.1| - 1.2 7.8 4.6 11 4.6 0.0 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) Folate_carrier PF01770.18 gi|282165003|ref|YP_003357388.1| - 1.7 7.3 10.6 1.2 7.8 6.3 2.0 2 0 0 2 2 2 0 Reduced folate carrier DUF4064 PF13273.6 gi|282165003|ref|YP_003357388.1| - 5 7.5 18.2 51 4.2 0.0 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) ABC_tran PF00005.27 gi|282165004|ref|YP_003357389.1| - 4.6e-35 121.1 0.0 6.1e-35 120.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282165004|ref|YP_003357389.1| - 5e-09 36.4 0.1 0.0029 17.5 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282165004|ref|YP_003357389.1| - 1.5e-07 31.1 0.2 0.0014 18.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282165004|ref|YP_003357389.1| - 9.7e-05 22.0 0.2 0.00019 21.1 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|282165004|ref|YP_003357389.1| - 0.00014 22.2 0.0 0.0002 21.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|282165004|ref|YP_003357389.1| - 0.00038 20.4 0.4 0.00081 19.3 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|282165004|ref|YP_003357389.1| - 0.0008 19.7 0.3 0.019 15.2 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|282165004|ref|YP_003357389.1| - 0.0086 15.8 0.0 0.056 13.2 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|282165004|ref|YP_003357389.1| - 0.0096 16.4 0.1 0.016 15.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|282165004|ref|YP_003357389.1| - 0.025 14.7 0.1 0.089 12.9 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|282165004|ref|YP_003357389.1| - 0.028 14.6 0.1 0.063 13.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|282165004|ref|YP_003357389.1| - 0.048 13.5 0.1 0.67 9.8 0.0 2.3 1 1 1 2 2 2 0 Adenylylsulphate kinase IstB_IS21 PF01695.17 gi|282165004|ref|YP_003357389.1| - 0.059 13.1 0.0 0.35 10.6 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|282165004|ref|YP_003357389.1| - 0.067 12.9 0.1 0.34 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|282165004|ref|YP_003357389.1| - 0.11 12.2 0.1 0.49 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|282165004|ref|YP_003357389.1| - 0.12 12.6 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|282165004|ref|YP_003357389.1| - 0.14 12.7 0.4 0.45 11.1 0.3 1.9 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|282165004|ref|YP_003357389.1| - 0.23 11.0 1.2 0.88 9.1 0.1 2.2 2 1 0 2 2 2 0 AAA domain DUF308 PF03729.13 gi|282165005|ref|YP_003357390.1| - 5.4e-23 81.1 59.3 3.9e-11 43.1 17.1 3.2 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) EcsB PF05975.12 gi|282165005|ref|YP_003357390.1| - 1.4 7.7 25.2 0.018 13.9 16.6 1.8 1 1 1 2 2 2 0 Bacterial ABC transporter protein EcsB KGG PF10685.9 gi|282165008|ref|YP_003357393.1| - 2.6e-08 33.9 8.7 0.095 13.0 1.6 3.4 3 0 0 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|282165008|ref|YP_003357393.1| - 1.7e-06 28.5 14.2 0.0025 18.3 5.4 2.0 1 1 1 2 2 2 2 Small hydrophilic plant seed protein Integrase_H2C2 PF17921.1 gi|282165008|ref|YP_003357393.1| - 0.16 12.1 0.2 10 6.3 0.0 2.2 2 0 0 2 2 2 0 Integrase zinc binding domain SASP PF00269.20 gi|282165008|ref|YP_003357393.1| - 0.82 9.7 11.8 4.2 7.5 0.2 3.0 2 1 1 3 3 3 0 Small, acid-soluble spore proteins, alpha/beta type SUI1 PF01253.22 gi|282165009|ref|YP_003357394.1| - 2.1e-21 76.2 1.4 2.6e-21 75.9 1.4 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|282165009|ref|YP_003357394.1| - 3.6e-05 24.0 0.7 5.2e-05 23.5 0.7 1.2 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|282165009|ref|YP_003357394.1| - 0.0048 16.6 0.9 0.0066 16.2 0.9 1.2 1 0 0 1 1 1 1 DTW domain DUF999 PF06198.11 gi|282165009|ref|YP_003357394.1| - 0.042 13.9 0.2 0.05 13.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF999) CxxCxxCC PF03692.15 gi|282165010|ref|YP_003357395.1| - 2.5e-08 34.5 5.0 3.6e-08 34.0 5.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain ThiF PF00899.21 gi|282165012|ref|YP_003357397.1| - 7.4e-16 58.2 4.2 5.4e-14 52.1 4.2 2.2 1 1 0 1 1 1 1 ThiF family Prok-JAB PF14464.6 gi|282165012|ref|YP_003357397.1| - 0.0005 19.8 0.0 0.0009 19.0 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain adh_short PF00106.25 gi|282165012|ref|YP_003357397.1| - 0.0048 16.4 0.1 0.0093 15.4 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase MFS_1 PF07690.16 gi|282165013|ref|YP_003357398.1| - 1.8e-58 198.2 68.2 4.7e-39 134.3 25.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|282165013|ref|YP_003357398.1| - 1.6e-14 53.6 27.0 5.2e-09 35.5 9.2 2.1 1 1 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|282165013|ref|YP_003357398.1| - 7e-13 47.8 31.1 9.4e-13 47.4 31.1 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector LacY_symp PF01306.19 gi|282165013|ref|YP_003357398.1| - 1.2e-05 24.3 20.5 0.00014 20.8 6.0 2.4 2 1 0 2 2 2 2 LacY proton/sugar symporter Sugar_tr PF00083.24 gi|282165013|ref|YP_003357398.1| - 2.3e-05 23.4 15.9 8.7e-05 21.6 5.3 4.0 1 1 2 3 3 3 2 Sugar (and other) transporter OATP PF03137.20 gi|282165013|ref|YP_003357398.1| - 0.0039 15.6 0.7 0.0039 15.6 0.7 4.2 2 2 1 4 4 4 3 Organic Anion Transporter Polypeptide (OATP) family DUF202 PF02656.15 gi|282165015|ref|YP_003357400.1| - 4.8e-16 59.0 7.3 1.1e-15 57.9 0.9 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF202) Abhydrolase_9_N PF15420.6 gi|282165015|ref|YP_003357400.1| - 0.028 14.4 0.2 0.034 14.1 0.2 1.1 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus L6_membrane PF05805.12 gi|282165015|ref|YP_003357400.1| - 0.058 13.0 0.6 0.073 12.6 0.6 1.1 1 0 0 1 1 1 0 L6 membrane protein DUF3043 PF11241.8 gi|282165015|ref|YP_003357400.1| - 0.15 12.1 0.1 0.22 11.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3043) Radical_SAM PF04055.21 gi|282165016|ref|YP_003357401.1| - 1.6e-12 48.1 0.1 2.6e-12 47.5 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SEC-C PF02810.15 gi|282165016|ref|YP_003357401.1| - 8.3e-11 41.6 9.8 1.7e-10 40.6 9.8 1.6 1 0 0 1 1 1 1 SEC-C motif SPASM PF13186.6 gi|282165016|ref|YP_003357401.1| - 8.3e-08 32.6 0.2 2.1e-07 31.4 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|282165016|ref|YP_003357401.1| - 1.7e-05 25.1 0.0 5e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|282165016|ref|YP_003357401.1| - 0.043 14.0 0.0 0.087 13.0 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain zf-C2H2_11 PF16622.5 gi|282165016|ref|YP_003357401.1| - 0.33 10.7 1.7 0.94 9.3 1.7 1.7 1 0 0 1 1 1 0 zinc-finger C2H2-type Sulfatase PF00884.23 gi|282165017|ref|YP_003357402.1| - 2.3e-91 306.4 0.0 2.9e-91 306.1 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|282165017|ref|YP_003357402.1| - 2.3e-06 27.4 0.1 0.0014 18.2 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase SBF PF01758.16 gi|282165018|ref|YP_003357403.1| - 2.3e-13 50.3 13.5 2.3e-13 50.3 13.5 1.7 1 1 1 2 2 2 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|282165018|ref|YP_003357403.1| - 1.3e-11 44.4 14.3 1.7e-11 44.0 14.3 1.2 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Sulfatase PF00884.23 gi|282165019|ref|YP_003357404.1| - 7.8e-61 206.1 0.0 1.4e-60 205.3 0.0 1.4 2 0 0 2 2 2 1 Sulfatase Sulfatase_C PF14707.6 gi|282165019|ref|YP_003357404.1| - 1.2e-08 35.8 0.1 2.3e-08 34.8 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of aryl-sulfatase Phosphodiest PF01663.22 gi|282165019|ref|YP_003357404.1| - 0.0089 15.7 0.1 0.054 13.1 0.0 2.0 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1622 PF07784.11 gi|282165020|ref|YP_003357405.1| - 5.2e-26 90.4 0.4 7.7e-26 89.8 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1622) EamA PF00892.20 gi|282165020|ref|YP_003357405.1| - 0.0021 18.3 4.5 0.0064 16.7 4.4 1.7 1 1 0 1 1 1 1 EamA-like transporter family Peptidase_M30 PF10460.9 gi|282165021|ref|YP_003357406.1| - 0.092 11.7 0.0 0.094 11.6 0.0 1.1 1 0 0 1 1 1 0 Peptidase M30 AMP-binding PF00501.28 gi|282165023|ref|YP_003357408.1| - 2.1e-17 62.8 0.0 2.7e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme SIS_2 PF13580.6 gi|282165023|ref|YP_003357408.1| - 0.01 15.9 0.0 0.024 14.7 0.0 1.6 1 1 0 1 1 1 0 SIS domain TspO_MBR PF03073.15 gi|282165024|ref|YP_003357409.1| - 1.7e-42 144.7 24.4 2e-42 144.5 24.4 1.0 1 0 0 1 1 1 1 TspO/MBR family Fasciclin PF02469.22 gi|282165025|ref|YP_003357410.1| - 4.7e-21 75.3 0.0 5.8e-21 75.0 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain Peptidase_MA_2 PF13485.6 gi|282165027|ref|YP_003357412.1| - 1.7e-14 54.1 0.1 2.7e-14 53.4 0.1 1.3 1 0 0 1 1 1 1 Peptidase MA superfamily CarboxypepD_reg PF13620.6 gi|282165027|ref|YP_003357412.1| - 1.7e-08 34.6 0.2 4.4e-08 33.3 0.2 1.8 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain phage_tail_N PF08400.10 gi|282165027|ref|YP_003357412.1| - 0.0003 20.8 2.7 0.00085 19.3 0.2 2.4 2 0 0 2 2 2 1 Prophage tail fibre N-terminal Big_1 PF02369.16 gi|282165027|ref|YP_003357412.1| - 0.00084 19.3 0.0 0.0037 17.2 0.0 2.1 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarbopepD_reg_2 PF13715.6 gi|282165027|ref|YP_003357412.1| - 0.002 18.1 0.3 0.007 16.3 0.3 1.9 1 0 0 1 1 1 1 CarboxypepD_reg-like domain DUF1570 PF07607.11 gi|282165027|ref|YP_003357412.1| - 0.026 14.8 0.1 0.37 11.1 0.1 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1570) YoeB_toxin PF06769.14 gi|282165027|ref|YP_003357412.1| - 0.057 13.5 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 YoeB-like toxin of bacterial type II toxin-antitoxin system SKG6 PF08693.10 gi|282165027|ref|YP_003357412.1| - 0.31 10.5 4.8 0.61 9.5 4.8 1.5 1 0 0 1 1 1 0 Transmembrane alpha-helix domain HSP20 PF00011.21 gi|282165028|ref|YP_003357413.1| - 8.7e-18 64.4 0.0 1.1e-17 64.0 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|282165028|ref|YP_003357413.1| - 2.8e-11 42.8 0.0 4.6e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|282165028|ref|YP_003357413.1| - 0.028 15.4 0.0 0.038 15.0 0.0 1.2 1 0 0 1 1 1 0 CS domain DUF3006 PF11213.8 gi|282165028|ref|YP_003357413.1| - 0.13 12.5 3.0 0.45 10.8 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3006) Rhodanese PF00581.20 gi|282165029|ref|YP_003357414.1| - 1.5e-13 51.2 0.0 2.5e-13 50.5 0.0 1.4 1 1 0 1 1 1 1 Rhodanese-like domain Aldedh PF00171.22 gi|282165030|ref|YP_003357415.1| - 4.8e-168 559.4 0.0 5.3e-168 559.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|282165030|ref|YP_003357415.1| - 0.0079 15.7 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1487) Peptidase_M24 PF00557.24 gi|282165033|ref|YP_003357418.1| - 2.6e-42 144.9 0.1 3.1e-42 144.7 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.24 gi|282165034|ref|YP_003357419.1| - 2.8e-46 157.9 0.2 3.5e-46 157.5 0.2 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|282165034|ref|YP_003357419.1| - 1.1e-06 29.3 0.0 1.9e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain HTH_5 PF01022.20 gi|282165035|ref|YP_003357420.1| - 0.00042 20.1 0.0 0.0008 19.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_46 PF15977.5 gi|282165035|ref|YP_003357420.1| - 0.011 15.8 0.1 0.022 14.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding MarR_2 PF12802.7 gi|282165035|ref|YP_003357420.1| - 0.013 15.3 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|282165035|ref|YP_003357420.1| - 0.051 13.4 0.0 0.096 12.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4897 PF16238.5 gi|282165035|ref|YP_003357420.1| - 0.062 13.1 0.0 0.12 12.2 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4897) Rrf2 PF02082.20 gi|282165035|ref|YP_003357420.1| - 0.071 13.5 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.19 gi|282165035|ref|YP_003357420.1| - 0.17 11.8 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Radical_SAM_C PF16199.5 gi|282165036|ref|YP_003357421.1| - 3.6e-26 91.0 0.1 7e-26 90.1 0.1 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|282165036|ref|YP_003357421.1| - 1.3e-20 74.4 0.0 4.5e-20 72.7 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|282165036|ref|YP_003357421.1| - 2.4e-07 31.0 0.0 5.5e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|282165036|ref|YP_003357421.1| - 2.4e-06 27.5 0.0 4.8e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|282165036|ref|YP_003357421.1| - 0.012 16.0 0.1 0.026 14.9 0.1 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TPR_1 PF00515.28 gi|282165037|ref|YP_003357422.1| - 1.2e-05 25.0 9.2 0.022 14.6 0.2 4.6 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282165037|ref|YP_003357422.1| - 0.00031 20.6 1.8 1.1 9.4 0.1 3.6 2 1 0 2 2 2 2 Tetratricopeptide repeat PPR_2 PF13041.6 gi|282165037|ref|YP_003357422.1| - 0.00067 19.8 0.2 7.4 6.8 0.0 4.5 4 0 0 4 4 4 1 PPR repeat family TPR_2 PF07719.17 gi|282165037|ref|YP_003357422.1| - 0.00078 19.4 20.8 0.002 18.1 0.5 6.0 6 1 1 7 7 7 2 Tetratricopeptide repeat PPR PF01535.20 gi|282165037|ref|YP_003357422.1| - 0.00087 19.4 0.6 11 6.5 0.1 4.5 3 0 0 3 3 3 1 PPR repeat DUF3856 PF12968.7 gi|282165037|ref|YP_003357422.1| - 0.0011 19.1 9.2 0.016 15.3 1.1 3.5 1 1 2 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_8 PF13181.6 gi|282165037|ref|YP_003357422.1| - 0.027 14.7 13.2 1.8 9.0 0.2 5.4 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282165037|ref|YP_003357422.1| - 0.028 14.3 2.9 0.9 9.5 0.2 3.5 2 0 0 2 2 2 0 Tetratricopeptide repeat LANC_like PF05147.13 gi|282165037|ref|YP_003357422.1| - 0.062 11.9 0.1 0.22 10.1 0.1 1.9 2 0 0 2 2 2 0 Lanthionine synthetase C-like protein TPR_14 PF13428.6 gi|282165037|ref|YP_003357422.1| - 0.071 14.0 0.7 0.071 14.0 0.7 6.4 6 2 1 7 7 5 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282165037|ref|YP_003357422.1| - 0.081 13.2 19.9 0.44 10.9 1.5 5.3 5 1 0 5 5 5 0 Tetratricopeptide repeat DUF5113 PF17140.4 gi|282165037|ref|YP_003357422.1| - 0.23 11.2 10.5 0.58 10.0 0.1 3.8 5 0 0 5 5 5 0 Domain of unknown function (DUF5113) TPR_11 PF13414.6 gi|282165037|ref|YP_003357422.1| - 0.35 10.6 4.9 4.6 7.0 0.5 3.7 4 0 0 4 4 4 0 TPR repeat TPR_6 PF13174.6 gi|282165037|ref|YP_003357422.1| - 6.4 7.6 8.7 17 6.3 0.3 4.8 3 1 0 3 3 3 0 Tetratricopeptide repeat Rubrerythrin PF02915.17 gi|282165038|ref|YP_003357423.1| - 3.1e-24 85.9 16.8 2e-18 67.1 6.5 2.0 1 1 1 2 2 2 2 Rubrerythrin Ferritin PF00210.24 gi|282165038|ref|YP_003357423.1| - 0.014 15.3 2.0 0.028 14.4 2.0 1.4 1 1 0 1 1 1 0 Ferritin-like domain TF_Zn_Ribbon PF08271.12 gi|282165038|ref|YP_003357423.1| - 0.017 14.6 3.5 0.18 11.3 3.9 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Pro_3_hydrox_C PF05373.11 gi|282165038|ref|YP_003357423.1| - 0.063 13.4 0.0 1.3 9.1 0.0 2.2 1 1 0 2 2 2 0 L-proline 3-hydroxylase, C-terminal zf-RRN7 PF11781.8 gi|282165038|ref|YP_003357423.1| - 0.14 11.9 0.7 2 8.2 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 MMR_HSR1_C PF08438.10 gi|282165039|ref|YP_003357424.1| - 5.6e-33 113.9 0.0 2.5e-31 108.6 0.0 2.2 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|282165039|ref|YP_003357424.1| - 1e-19 70.7 0.0 6.2e-19 68.2 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|282165039|ref|YP_003357424.1| - 5e-09 36.1 0.0 1.1e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|282165039|ref|YP_003357424.1| - 2.8e-08 33.4 0.1 2.8e-07 30.2 0.0 2.4 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|282165039|ref|YP_003357424.1| - 0.12 12.6 0.3 12 6.1 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF933) FKBP_C PF00254.28 gi|282165040|ref|YP_003357425.1| - 1.2e-15 57.6 0.5 3.4e-15 56.1 0.5 1.7 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase SWM_repeat PF13753.6 gi|282165040|ref|YP_003357425.1| - 0.14 12.3 5.8 0.93 9.7 0.6 2.9 2 1 1 3 3 3 0 Putative flagellar system-associated repeat HMA PF00403.26 gi|282165040|ref|YP_003357425.1| - 0.29 11.6 2.0 0.91 10.0 0.0 2.7 3 1 0 3 3 3 0 Heavy-metal-associated domain Cyclase PF04199.13 gi|282165041|ref|YP_003357426.1| - 4.6e-24 85.2 0.0 6e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase PfkB PF00294.24 gi|282165042|ref|YP_003357427.1| - 4.5e-56 190.4 0.0 5.4e-56 190.1 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|282165042|ref|YP_003357427.1| - 9.3e-08 31.7 0.0 6.2e-07 29.1 0.0 2.0 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase DUF5423 PF17461.2 gi|282165044|ref|YP_003357429.1| - 0.025 13.5 0.1 0.031 13.1 0.1 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5423) Wzy_C PF04932.15 gi|282165044|ref|YP_003357429.1| - 0.15 11.7 1.5 0.16 11.6 1.5 1.2 1 0 0 1 1 1 0 O-Antigen ligase DUF4097 PF13349.6 gi|282165045|ref|YP_003357430.1| - 9.9e-09 34.9 8.1 3.7e-06 26.5 1.8 2.1 1 1 1 2 2 2 2 Putative adhesin DUF2154 PF09922.9 gi|282165045|ref|YP_003357430.1| - 0.024 14.5 1.0 0.29 11.0 0.4 2.5 1 1 1 2 2 2 0 Cell wall-active antibiotics response 4TMS YvqF FKBP26_C PF18046.1 gi|282165045|ref|YP_003357430.1| - 0.06 13.5 0.0 1.4 9.0 0.0 2.4 2 0 0 2 2 2 0 FKBP26_C-terminal Bactofilin PF04519.13 gi|282165045|ref|YP_003357430.1| - 3 8.2 5.9 6.8 7.1 1.9 3.1 2 1 1 3 3 3 0 Polymer-forming cytoskeletal Phageshock_PspG PF09583.10 gi|282165046|ref|YP_003357431.1| - 1.4 9.3 15.2 0.3 11.4 8.3 2.8 2 1 0 2 2 2 0 Phage shock protein G (Phageshock_PspG) AIM24 PF01987.17 gi|282165047|ref|YP_003357432.1| - 2e-32 112.6 0.5 2.3e-32 112.4 0.5 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 MFS_1 PF07690.16 gi|282165049|ref|YP_003357434.1| - 5.4e-64 216.3 86.8 4.8e-55 186.9 53.4 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|282165049|ref|YP_003357434.1| - 4.3e-15 55.5 32.3 1.7e-12 46.9 14.8 2.2 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|282165049|ref|YP_003357434.1| - 3.8e-13 49.1 37.1 5.7e-12 45.2 16.1 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|282165049|ref|YP_003357434.1| - 2.5e-09 36.2 12.5 2.5e-09 36.2 12.5 2.9 1 1 2 3 3 3 1 MFS/sugar transport protein Glyco_hydro_57 PF03065.15 gi|282165050|ref|YP_003357435.1| - 3.4e-57 194.1 0.0 7e-57 193.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|282165050|ref|YP_003357435.1| - 0.0033 17.3 0.2 0.0071 16.2 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide deacetylase Nif11 PF07862.11 gi|282165050|ref|YP_003357435.1| - 0.037 14.3 0.1 0.089 13.1 0.1 1.7 1 0 0 1 1 1 0 Nif11 domain Glycos_transf_1 PF00534.20 gi|282165051|ref|YP_003357436.1| - 3.6e-32 111.2 0.0 6.7e-32 110.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282165051|ref|YP_003357436.1| - 6.9e-27 94.5 0.0 1.1e-26 93.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282165051|ref|YP_003357436.1| - 4.3e-20 72.4 0.1 1.1e-19 71.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.11 gi|282165051|ref|YP_003357436.1| - 5.7e-12 45.8 0.0 2e-07 31.0 0.1 2.4 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|282165051|ref|YP_003357436.1| - 1.5e-09 38.5 0.0 3.9e-09 37.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|282165051|ref|YP_003357436.1| - 0.057 13.8 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|282165052|ref|YP_003357437.1| - 1.2e-36 125.9 0.0 2e-36 125.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282165052|ref|YP_003357437.1| - 1e-28 100.5 0.0 7.7e-28 97.6 0.0 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|282165052|ref|YP_003357437.1| - 4.5e-25 88.6 0.0 1e-24 87.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|282165052|ref|YP_003357437.1| - 2.3e-24 86.7 0.0 3.7e-24 86.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|282165052|ref|YP_003357437.1| - 1.3e-08 35.1 0.0 3.4e-08 33.8 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|282165052|ref|YP_003357437.1| - 4.4e-06 26.6 0.0 2e-05 24.4 0.0 2.0 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|282165052|ref|YP_003357437.1| - 0.0052 16.8 0.0 0.047 13.7 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like Bmp PF02608.14 gi|282165052|ref|YP_003357437.1| - 0.011 14.8 0.0 0.02 13.9 0.0 1.4 1 0 0 1 1 1 0 ABC transporter substrate-binding protein PnrA-like Glycogen_syn PF05693.13 gi|282165052|ref|YP_003357437.1| - 0.027 13.0 0.1 0.076 11.5 0.0 1.7 2 1 1 3 3 3 0 Glycogen synthase LpxB PF02684.15 gi|282165052|ref|YP_003357437.1| - 0.046 12.6 0.0 0.078 11.8 0.0 1.3 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase DUF5507 PF17612.2 gi|282165052|ref|YP_003357437.1| - 0.17 11.6 0.0 0.49 10.1 0.0 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5507) GDE_C PF06202.14 gi|282165053|ref|YP_003357438.1| - 3.2e-83 279.8 0.0 5e-83 279.1 0.0 1.2 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|282165053|ref|YP_003357438.1| - 3.1e-27 95.4 0.0 4.6e-27 94.9 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Glyco_hydro_100 PF12899.7 gi|282165053|ref|YP_003357438.1| - 0.00063 18.5 0.0 0.2 10.3 0.0 2.1 2 0 0 2 2 2 2 Alkaline and neutral invertase Glyco_hydro_36 PF17167.4 gi|282165053|ref|YP_003357438.1| - 0.0018 17.1 0.0 0.44 9.2 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase 36 superfamily, catalytic domain Glyco_hydro_63 PF03200.16 gi|282165053|ref|YP_003357438.1| - 0.09 11.5 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 63 C-terminal domain TrkA_N PF02254.18 gi|282165054|ref|YP_003357439.1| - 5.2e-21 75.1 0.8 1e-16 61.2 0.1 3.4 3 1 0 3 3 3 2 TrkA-N domain RyR PF02026.16 gi|282165054|ref|YP_003357439.1| - 1.2e-15 57.5 0.0 3.8e-09 36.6 0.0 2.4 2 0 0 2 2 2 2 RyR domain NmrA PF05368.13 gi|282165054|ref|YP_003357439.1| - 9.3e-05 22.1 0.0 0.00035 20.2 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family NAD_binding_7 PF13241.6 gi|282165054|ref|YP_003357439.1| - 0.0003 21.2 0.1 0.00086 19.7 0.1 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|282165054|ref|YP_003357439.1| - 0.0059 17.2 0.1 3.8 8.2 0.0 3.8 4 0 0 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|282165054|ref|YP_003357439.1| - 0.041 14.0 0.3 8.3 6.6 0.1 2.6 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Toprim_2 PF13155.6 gi|282165054|ref|YP_003357439.1| - 0.071 13.5 0.1 2.3 8.7 0.1 2.3 2 0 0 2 2 2 0 Toprim-like TPR_12 PF13424.6 gi|282165055|ref|YP_003357440.1| - 1.7e-21 76.3 18.6 1.7e-05 25.1 1.5 6.4 4 1 1 6 6 6 5 Tetratricopeptide repeat TIR_2 PF13676.6 gi|282165055|ref|YP_003357440.1| - 8.1e-17 61.9 0.1 2.6e-16 60.3 0.0 2.0 2 0 0 2 2 1 1 TIR domain TPR_MalT PF17874.1 gi|282165055|ref|YP_003357440.1| - 1.3e-12 47.8 4.5 3.5e-10 39.8 1.6 3.3 2 2 0 2 2 2 2 MalT-like TPR region NACHT PF05729.12 gi|282165055|ref|YP_003357440.1| - 1.1e-07 31.9 0.0 3.4e-07 30.3 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_16 PF13191.6 gi|282165055|ref|YP_003357440.1| - 1.1e-06 29.2 0.0 3e-06 27.7 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain TPR_14 PF13428.6 gi|282165055|ref|YP_003357440.1| - 1.2e-06 28.8 19.6 1.2 10.1 0.1 8.9 8 1 1 9 9 8 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282165055|ref|YP_003357440.1| - 3.5e-06 26.7 10.4 2.1 8.7 0.0 7.4 8 0 0 8 8 8 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282165055|ref|YP_003357440.1| - 5.4e-06 26.1 12.9 20 5.2 0.2 8.6 8 0 0 8 8 8 0 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|282165055|ref|YP_003357440.1| - 0.001 19.1 0.5 2.8 8.1 0.0 3.9 2 2 2 4 4 4 1 Anaphase-promoting complex subunit 5 TPR_11 PF13414.6 gi|282165055|ref|YP_003357440.1| - 0.0028 17.3 1.7 8.3 6.2 0.0 5.2 6 0 0 6 6 5 1 TPR repeat TPR_1 PF00515.28 gi|282165055|ref|YP_003357440.1| - 0.03 14.2 9.3 8.3 6.4 0.1 5.8 7 0 0 7 7 7 0 Tetratricopeptide repeat NB-ARC PF00931.22 gi|282165055|ref|YP_003357440.1| - 0.076 12.2 0.0 0.15 11.2 0.0 1.6 1 1 0 1 1 1 0 NB-ARC domain Tugs PF17840.1 gi|282165055|ref|YP_003357440.1| - 0.12 12.6 0.2 0.51 10.6 0.2 2.1 1 0 0 1 1 1 0 Tethering Ubl4a to BAGS domain NTPase_1 PF03266.15 gi|282165055|ref|YP_003357440.1| - 0.12 12.3 0.0 3.9 7.4 0.0 2.4 2 0 0 2 2 2 0 NTPase TPR_8 PF13181.6 gi|282165055|ref|YP_003357440.1| - 0.13 12.5 7.9 1.7e+02 2.8 0.0 6.2 6 1 1 7 7 7 0 Tetratricopeptide repeat DUF5101 PF17031.5 gi|282165055|ref|YP_003357440.1| - 0.27 11.3 1.3 1.2 9.3 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF5101) TPR_7 PF13176.6 gi|282165055|ref|YP_003357440.1| - 0.54 10.4 11.5 1.8e+02 2.5 0.0 7.8 7 3 0 7 7 7 0 Tetratricopeptide repeat TPR_4 PF07721.14 gi|282165055|ref|YP_003357440.1| - 1.4 9.8 23.9 1.4 9.8 0.2 7.1 9 0 0 9 9 6 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282165055|ref|YP_003357440.1| - 2.7 8.7 14.6 46 4.8 0.4 5.7 5 1 0 5 5 4 0 Tetratricopeptide repeat Peptidase_M43 PF05572.13 gi|282165056|ref|YP_003357441.1| - 1.6e-05 24.9 1.7 0.0011 18.9 0.6 2.8 2 1 0 2 2 2 2 Pregnancy-associated plasma protein-A Radical_SAM PF04055.21 gi|282165058|ref|YP_003357443.1| - 1.2e-22 81.1 0.0 2e-22 80.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|282165058|ref|YP_003357443.1| - 2.6e-11 43.9 0.0 5.1e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|282165058|ref|YP_003357443.1| - 1e-10 42.0 0.0 1.9e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|282165058|ref|YP_003357443.1| - 5.6e-08 32.9 0.0 1.2e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_C1 PF00112.23 gi|282165059|ref|YP_003357444.1| - 3.1e-15 56.9 0.0 3.9e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Papain family cysteine protease HEAT_2 PF13646.6 gi|282165061|ref|YP_003357446.1| - 1.8e-22 79.5 0.6 1.9e-11 44.2 0.0 2.1 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.22 gi|282165061|ref|YP_003357446.1| - 1e-11 44.0 0.8 0.009 16.2 0.0 3.6 3 0 0 3 3 3 3 HEAT repeat HEAT_EZ PF13513.6 gi|282165061|ref|YP_003357446.1| - 5.4e-11 42.8 2.1 0.00097 19.6 0.2 3.3 3 0 0 3 3 3 3 HEAT-like repeat HEAT_PBS PF03130.16 gi|282165061|ref|YP_003357446.1| - 3.7e-10 39.5 8.8 0.00031 21.1 1.0 3.7 4 0 0 4 4 4 2 PBS lyase HEAT-like repeat Cnd1 PF12717.7 gi|282165061|ref|YP_003357446.1| - 0.00041 20.4 0.0 0.084 12.9 0.0 3.2 1 1 2 3 3 3 1 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|282165061|ref|YP_003357446.1| - 0.0035 17.3 0.1 0.29 11.2 0.0 2.9 2 1 1 3 3 3 1 Armadillo/beta-catenin-like repeat DUF1641 PF07849.11 gi|282165061|ref|YP_003357446.1| - 0.19 11.6 0.9 16 5.4 0.0 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1641) DUF3887 PF13026.6 gi|282165063|ref|YP_003357448.1| - 3.5e-11 43.8 0.2 4.1e-11 43.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3887) DUF4019 PF13211.6 gi|282165063|ref|YP_003357448.1| - 7.4e-05 23.1 0.0 0.00018 21.8 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF4019) DUF553 PF04473.12 gi|282165064|ref|YP_003357449.1| - 0.00073 19.1 0.0 0.0019 17.8 0.0 1.6 1 1 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.19 gi|282165064|ref|YP_003357449.1| - 0.0026 18.2 0.0 0.025 15.0 0.0 2.3 2 0 0 2 2 2 1 Transglutaminase-like superfamily CARDB PF07705.11 gi|282165064|ref|YP_003357449.1| - 0.097 12.9 0.8 8.6 6.7 0.0 2.8 3 0 0 3 3 3 0 CARDB Transposase_mut PF00872.18 gi|282165065|ref|YP_003357450.1| - 2.9e-105 352.3 0.0 3.6e-105 352.0 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 gi|282165065|ref|YP_003357450.1| - 1.2e-11 44.8 0.0 2.9e-11 43.7 0.0 1.6 1 0 0 1 1 1 1 MULE transposase domain DDE_Tnp_IS66 PF03050.14 gi|282165065|ref|YP_003357450.1| - 5.6e-06 26.0 0.1 2.4e-05 24.0 0.0 2.0 2 1 0 2 2 2 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.6 gi|282165065|ref|YP_003357450.1| - 7.8e-06 26.2 0.0 0.027 14.7 0.0 2.6 2 0 0 2 2 2 2 DDE domain DDE_Tnp_ISL3 PF01610.17 gi|282165065|ref|YP_003357450.1| - 0.028 14.1 0.0 0.067 12.9 0.0 1.7 1 1 0 1 1 1 0 Transposase DUF3486 PF11985.8 gi|282165065|ref|YP_003357450.1| - 0.032 14.6 0.2 4.1 7.8 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3486) HTH_32 PF13565.6 gi|282165065|ref|YP_003357450.1| - 0.1 13.2 0.1 5.4 7.7 0.1 2.6 2 0 0 2 2 2 0 Homeodomain-like domain DHHA1 PF02272.19 gi|282165066|ref|YP_003357451.1| - 7.9e-13 49.0 0.1 1.6e-12 48.0 0.1 1.7 1 1 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|282165066|ref|YP_003357451.1| - 7.2e-08 32.6 1.0 2e-06 28.0 0.1 2.3 2 0 0 2 2 2 1 DHH family FeThRed_B PF02943.15 gi|282165067|ref|YP_003357452.1| - 2e-24 85.6 0.1 2.9e-24 85.1 0.1 1.2 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.15 gi|282165067|ref|YP_003357452.1| - 0.031 13.9 2.2 0.087 12.4 2.2 1.7 1 0 0 1 1 1 0 RecR protein Rubredoxin PF00301.20 gi|282165067|ref|YP_003357452.1| - 0.28 11.2 6.8 1.9 8.6 0.3 2.7 1 1 1 2 2 2 0 Rubredoxin Glutaredoxin PF00462.24 gi|282165068|ref|YP_003357453.1| - 2.1e-11 43.9 0.1 3.4e-11 43.2 0.1 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|282165068|ref|YP_003357453.1| - 0.0035 17.6 0.0 0.0043 17.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|282165068|ref|YP_003357453.1| - 0.024 15.0 0.0 0.03 14.6 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 gi|282165068|ref|YP_003357453.1| - 0.037 14.4 0.0 0.047 14.1 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Proteasome PF00227.26 gi|282165069|ref|YP_003357454.1| - 2.2e-51 174.0 0.0 2.5e-51 173.9 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit NifU_N PF01592.16 gi|282165069|ref|YP_003357454.1| - 0.1 12.7 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 NifU-like N terminal domain KH_7 PF17214.3 gi|282165070|ref|YP_003357455.1| - 6.5e-29 99.7 0.6 7.2e-28 96.4 0.1 2.6 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|282165070|ref|YP_003357455.1| - 3.5e-26 91.6 0.0 1.1e-25 90.0 0.0 1.9 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.12 gi|282165070|ref|YP_003357455.1| - 1.5e-17 63.3 0.0 4.4e-17 61.8 0.0 1.8 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|282165070|ref|YP_003357455.1| - 3.4e-14 53.3 0.0 1.3e-12 48.1 0.0 2.9 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|282165070|ref|YP_003357455.1| - 4.1e-12 46.0 0.0 6.8e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|282165070|ref|YP_003357455.1| - 7e-11 42.0 0.1 3e-10 40.0 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|282165070|ref|YP_003357455.1| - 2e-05 24.6 0.0 5.4e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|282165070|ref|YP_003357455.1| - 0.00013 21.7 0.5 0.0016 18.3 0.1 2.9 3 0 0 3 3 3 1 KH domain KH_4 PF13083.6 gi|282165070|ref|YP_003357455.1| - 0.0059 16.5 0.1 0.014 15.2 0.1 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|282165070|ref|YP_003357455.1| - 0.025 14.4 0.1 0.084 12.7 0.1 2.0 1 0 0 1 1 1 0 KH domain CarboxypepD_reg PF13620.6 gi|282165071|ref|YP_003357456.1| - 4.4e-08 33.3 3.6 7.7e-08 32.5 3.6 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|282165071|ref|YP_003357456.1| - 1.8e-05 24.6 0.2 2.7e-05 24.1 0.2 1.2 1 0 0 1 1 1 1 CarboxypepD_reg-like domain SdrD_B PF17210.3 gi|282165071|ref|YP_003357456.1| - 0.00012 22.3 1.2 0.00016 21.8 1.0 1.4 1 1 0 1 1 1 1 SdrD B-like domain Trypan_PARP PF05887.11 gi|282165071|ref|YP_003357456.1| - 0.082 12.9 7.9 0.27 11.2 7.9 1.8 1 1 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Fungus-induced PF10917.8 gi|282165071|ref|YP_003357456.1| - 7.6 6.9 6.3 2.9 8.3 0.3 2.4 2 0 0 2 2 2 0 Fungus-induced protein Pyridox_ox_2 PF12900.7 gi|282165072|ref|YP_003357457.1| - 8.9e-28 97.1 0.0 1e-27 96.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|282165072|ref|YP_003357457.1| - 0.00028 21.0 0.0 0.00036 20.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF3821 PF12863.7 gi|282165072|ref|YP_003357457.1| - 0.066 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3821) PNP_UDP_1 PF01048.20 gi|282165073|ref|YP_003357458.1| - 8.6e-49 165.9 0.8 9.8e-49 165.7 0.8 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DHODB_Fe-S_bind PF10418.9 gi|282165073|ref|YP_003357458.1| - 0.0082 15.9 0.9 1.5 8.7 0.0 2.7 2 0 0 2 2 2 2 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Methyltransf_11 PF08241.12 gi|282165074|ref|YP_003357459.1| - 2.9e-24 85.5 0.1 5.9e-24 84.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282165074|ref|YP_003357459.1| - 3e-22 79.1 0.0 9.5e-22 77.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282165074|ref|YP_003357459.1| - 3.1e-19 69.3 0.0 4.3e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282165074|ref|YP_003357459.1| - 1.3e-16 60.6 0.1 2.1e-16 60.0 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|282165074|ref|YP_003357459.1| - 5.8e-14 52.6 0.0 1.1e-13 51.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282165074|ref|YP_003357459.1| - 2e-11 44.0 0.0 3.2e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|282165074|ref|YP_003357459.1| - 4.5e-08 32.7 0.0 5.8e-08 32.4 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|282165074|ref|YP_003357459.1| - 7.6e-07 28.9 0.0 1.1e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.19 gi|282165074|ref|YP_003357459.1| - 2.8e-06 27.2 0.0 3.8e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.15 gi|282165074|ref|YP_003357459.1| - 6.4e-05 22.9 0.9 0.00017 21.5 0.9 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase UPF0020 PF01170.18 gi|282165074|ref|YP_003357459.1| - 0.00019 21.2 0.0 0.00031 20.5 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MetW PF07021.12 gi|282165074|ref|YP_003357459.1| - 0.00031 20.4 0.0 0.0005 19.7 0.0 1.3 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.10 gi|282165074|ref|YP_003357459.1| - 0.00037 20.1 0.0 0.00049 19.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.6 gi|282165074|ref|YP_003357459.1| - 0.00055 20.0 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|282165074|ref|YP_003357459.1| - 0.00059 19.4 0.0 0.001 18.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|282165074|ref|YP_003357459.1| - 0.00097 18.6 0.0 0.0035 16.8 0.0 1.7 1 1 1 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|282165074|ref|YP_003357459.1| - 0.0017 17.8 0.0 0.0026 17.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB N6_N4_Mtase PF01555.18 gi|282165074|ref|YP_003357459.1| - 0.002 17.8 0.0 0.02 14.6 0.0 2.1 2 0 0 2 2 2 1 DNA methylase SAM_MT PF04445.13 gi|282165074|ref|YP_003357459.1| - 0.0023 17.4 0.0 0.0035 16.8 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase Methyltransf_18 PF12847.7 gi|282165074|ref|YP_003357459.1| - 0.0037 17.2 0.0 0.011 15.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.19 gi|282165074|ref|YP_003357459.1| - 0.0093 16.1 0.2 0.018 15.1 0.2 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_24 PF13578.6 gi|282165074|ref|YP_003357459.1| - 0.035 15.1 0.0 0.076 14.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TPMT PF05724.11 gi|282165074|ref|YP_003357459.1| - 0.052 13.2 0.0 0.076 12.7 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) DOT1 PF08123.13 gi|282165074|ref|YP_003357459.1| - 0.094 12.2 0.1 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_9 PF08003.11 gi|282165074|ref|YP_003357459.1| - 0.18 10.7 0.0 0.28 10.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) RrnaAD PF00398.20 gi|282165074|ref|YP_003357459.1| - 0.18 10.9 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Pro_CA PF00484.19 gi|282165075|ref|YP_003357460.1| - 2.1e-29 102.8 0.0 4e-29 101.9 0.0 1.5 1 0 0 1 1 1 1 Carbonic anhydrase PELOTA_1 PF15608.6 gi|282165075|ref|YP_003357460.1| - 0.1 12.5 0.1 0.38 10.7 0.0 2.0 2 0 0 2 2 2 0 PELOTA RNA binding domain FrhB_FdhB_C PF04432.13 gi|282165076|ref|YP_003357461.1| - 2.2e-30 105.6 0.9 2.9e-30 105.1 0.2 1.6 1 1 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|282165076|ref|YP_003357461.1| - 4.3e-21 74.8 0.0 1e-20 73.7 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_9 PF13187.6 gi|282165076|ref|YP_003357461.1| - 1.1e-08 35.1 5.8 0.00073 19.7 0.3 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282165076|ref|YP_003357461.1| - 4.3e-08 33.5 7.1 2.4e-07 31.1 6.0 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282165076|ref|YP_003357461.1| - 7.2e-08 32.4 8.9 0.0014 18.7 0.5 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282165076|ref|YP_003357461.1| - 9.7e-08 32.4 8.0 0.0024 18.4 0.7 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282165076|ref|YP_003357461.1| - 2.5e-06 27.0 16.0 0.00068 19.4 5.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|282165076|ref|YP_003357461.1| - 5.4e-06 26.6 7.9 0.029 14.5 0.3 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282165076|ref|YP_003357461.1| - 5.7e-06 26.2 14.9 0.0098 15.9 1.5 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282165076|ref|YP_003357461.1| - 0.00048 20.7 12.9 0.00048 20.7 12.9 3.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282165076|ref|YP_003357461.1| - 0.0028 18.1 10.8 0.056 14.0 0.9 3.0 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_2 PF12797.7 gi|282165076|ref|YP_003357461.1| - 0.0056 16.7 3.3 0.0056 16.7 3.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|282165076|ref|YP_003357461.1| - 0.0064 16.9 18.4 0.041 14.4 3.4 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|282165076|ref|YP_003357461.1| - 0.013 16.4 18.7 0.74 10.8 14.3 3.5 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain c-SKI_SMAD_bind PF08782.10 gi|282165076|ref|YP_003357461.1| - 0.046 14.0 3.4 1.5 9.1 1.1 2.6 2 0 0 2 2 2 0 c-SKI Smad4 binding domain Fer4_21 PF14697.6 gi|282165076|ref|YP_003357461.1| - 0.066 13.3 16.1 1.5 9.0 14.6 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|282165076|ref|YP_003357461.1| - 0.08 12.7 7.3 2 8.2 0.2 2.7 3 0 0 3 3 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|282165076|ref|YP_003357461.1| - 0.62 11.0 13.2 1.1 10.1 0.7 3.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|282165077|ref|YP_003357462.1| - 4.8e-101 338.8 0.0 5.6e-101 338.6 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|282165077|ref|YP_003357462.1| - 2.7e-32 111.1 0.0 4.7e-32 110.3 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|282165077|ref|YP_003357462.1| - 6.6e-21 74.0 0.5 6.6e-21 74.0 0.5 2.0 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Form_Nir_trans PF01226.17 gi|282165078|ref|YP_003357463.1| - 2.6e-85 285.5 30.1 3e-85 285.3 30.1 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter NiFeSe_Hases PF00374.19 gi|282165079|ref|YP_003357464.1| - 4e-32 111.8 4.6 7.3e-15 54.8 0.0 4.2 3 2 1 4 4 4 4 Nickel-dependent hydrogenase Complex1_49kDa PF00346.19 gi|282165079|ref|YP_003357464.1| - 0.032 13.3 0.1 0.069 12.2 0.1 1.5 2 0 0 2 2 2 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Ribonucleas_3_2 PF11469.8 gi|282165079|ref|YP_003357464.1| - 0.12 12.8 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease III HycI PF01750.18 gi|282165080|ref|YP_003357465.1| - 2e-32 111.7 0.0 2.4e-32 111.5 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Oxidored_q6 PF01058.22 gi|282165081|ref|YP_003357466.1| - 1.2e-28 99.6 0.2 1.2e-28 99.6 0.2 2.0 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|282165081|ref|YP_003357466.1| - 2.8e-11 42.7 17.2 4.5e-07 29.4 2.0 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282165081|ref|YP_003357466.1| - 4.3e-07 30.4 15.4 2.1e-05 25.0 14.5 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282165081|ref|YP_003357466.1| - 5.2e-07 29.7 23.8 1.3e-06 28.4 10.7 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282165081|ref|YP_003357466.1| - 2.1e-06 27.7 23.9 9.1e-06 25.7 13.2 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282165081|ref|YP_003357466.1| - 6.5e-06 26.0 18.3 0.00056 19.9 2.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282165081|ref|YP_003357466.1| - 1.3e-05 25.0 20.0 0.0074 16.3 2.8 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|282165081|ref|YP_003357466.1| - 3.4e-05 24.7 14.5 0.0016 19.4 1.1 2.9 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|282165081|ref|YP_003357466.1| - 6.2e-05 23.0 16.2 0.0034 17.5 12.6 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282165081|ref|YP_003357466.1| - 0.0015 18.9 13.5 0.077 13.4 1.2 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282165081|ref|YP_003357466.1| - 0.0037 17.8 13.0 0.035 14.6 0.7 3.0 3 0 0 3 3 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|282165081|ref|YP_003357466.1| - 0.012 16.1 3.1 0.012 16.1 3.1 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|282165081|ref|YP_003357466.1| - 0.025 14.8 6.2 0.048 13.9 6.2 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282165081|ref|YP_003357466.1| - 0.26 11.9 21.2 0.3 11.7 2.6 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282165081|ref|YP_003357466.1| - 0.37 11.6 12.5 0.21 12.4 1.1 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|282165081|ref|YP_003357466.1| - 2.2 9.2 20.7 1.8 9.5 2.4 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.13 gi|282165082|ref|YP_003357467.1| - 3.8e-44 150.2 0.1 5.6e-44 149.7 0.1 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|282165082|ref|YP_003357467.1| - 3.2e-28 97.7 0.4 6.1e-28 96.8 0.4 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Nitro_FeMo-Co PF02579.17 gi|282165083|ref|YP_003357468.1| - 1.3e-18 67.1 0.0 1.5e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.17 gi|282165084|ref|YP_003357469.1| - 2.9e-11 43.6 0.1 3.4e-11 43.3 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor UDPG_MGDP_dh_N PF03721.14 gi|282165086|ref|YP_003357471.1| - 1.9e-68 229.7 0.1 3.1e-68 229.0 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|282165086|ref|YP_003357471.1| - 5.6e-37 125.8 0.0 1e-36 125.0 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|282165086|ref|YP_003357471.1| - 2.7e-30 104.9 0.1 9.1e-30 103.2 0.1 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|282165086|ref|YP_003357471.1| - 2.6e-05 24.7 0.1 0.086 13.4 0.0 3.9 3 2 1 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|282165086|ref|YP_003357471.1| - 0.00023 20.6 0.2 0.094 12.1 0.0 2.8 2 1 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|282165086|ref|YP_003357471.1| - 0.0012 18.6 0.0 0.0034 17.0 0.0 1.8 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|282165086|ref|YP_003357471.1| - 0.0029 17.6 0.1 0.011 15.7 0.0 2.1 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.22 gi|282165086|ref|YP_003357471.1| - 0.0029 18.4 0.0 0.096 13.5 0.0 2.5 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Pyr_redox_2 PF07992.14 gi|282165086|ref|YP_003357471.1| - 0.0066 15.7 0.3 0.026 13.8 0.0 2.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|282165086|ref|YP_003357471.1| - 0.0068 16.3 0.0 0.022 14.7 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DpaA_N PF16924.5 gi|282165086|ref|YP_003357471.1| - 0.01 15.9 0.3 1 9.5 0.0 3.2 3 1 1 4 4 4 0 Dipicolinate synthase subunit A N-terminal domain AlaDh_PNT_C PF01262.21 gi|282165086|ref|YP_003357471.1| - 0.043 13.1 0.0 0.23 10.7 0.0 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|282165086|ref|YP_003357471.1| - 0.071 13.7 0.1 0.37 11.4 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|282165086|ref|YP_003357471.1| - 0.09 12.9 0.1 2.9 8.1 0.0 2.5 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF2249 PF10006.9 gi|282165086|ref|YP_003357471.1| - 0.14 12.1 0.1 0.27 11.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DUF1382 PF07131.11 gi|282165086|ref|YP_003357471.1| - 0.18 11.8 0.0 0.36 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1382) DUF488 PF04343.13 gi|282165087|ref|YP_003357472.1| - 3.7e-34 117.9 0.0 4.7e-34 117.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 HhH-GPD PF00730.25 gi|282165088|ref|YP_003357473.1| - 3.2e-15 56.5 0.0 5.2e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein AlkA_N PF06029.11 gi|282165088|ref|YP_003357473.1| - 0.012 15.9 0.0 0.038 14.3 0.0 1.9 2 0 0 2 2 2 0 AlkA N-terminal domain LysE PF01810.18 gi|282165089|ref|YP_003357474.1| - 2.8e-29 102.0 13.9 3.6e-29 101.6 13.9 1.1 1 0 0 1 1 1 1 LysE type translocator DUF4181 PF13789.6 gi|282165089|ref|YP_003357474.1| - 0.0011 19.2 2.3 0.015 15.6 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4181) DUF2407_C PF13373.6 gi|282165089|ref|YP_003357474.1| - 0.24 11.6 0.3 0.55 10.4 0.2 1.7 1 1 0 1 1 1 0 DUF2407 C-terminal domain PIRT PF15099.6 gi|282165089|ref|YP_003357474.1| - 0.53 9.9 3.3 1.1 8.9 3.3 1.5 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family DUF1700 PF08006.11 gi|282165089|ref|YP_003357474.1| - 5.3 6.5 11.6 0.24 10.9 1.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1700) Pribosyltran_N PF13793.6 gi|282165090|ref|YP_003357475.1| - 6.5e-26 90.6 0.0 2.1e-24 85.7 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|282165090|ref|YP_003357475.1| - 9.6e-14 51.2 0.4 4.2e-13 49.1 0.3 2.0 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|282165090|ref|YP_003357475.1| - 4.4e-09 36.6 2.9 7.3e-09 35.9 2.9 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|282165090|ref|YP_003357475.1| - 7.5e-06 25.5 0.1 1.2e-05 24.8 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|282165090|ref|YP_003357475.1| - 0.0068 15.9 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase P5CR_dimer PF14748.6 gi|282165090|ref|YP_003357475.1| - 0.036 14.3 0.0 0.072 13.4 0.0 1.6 1 1 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation MoaE PF02391.17 gi|282165091|ref|YP_003357476.1| - 6.1e-24 84.5 0.1 1.7e-23 83.0 0.1 1.8 1 0 0 1 1 1 1 MoaE protein MobB PF03205.14 gi|282165091|ref|YP_003357476.1| - 9.5e-21 74.1 0.8 2e-20 73.1 0.8 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Roc PF08477.13 gi|282165091|ref|YP_003357476.1| - 0.0042 17.3 0.4 0.33 11.2 0.1 3.0 2 1 1 3 3 3 1 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1 PF01926.23 gi|282165091|ref|YP_003357476.1| - 0.0067 16.5 0.3 0.012 15.7 0.3 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|282165091|ref|YP_003357476.1| - 0.0094 16.0 0.1 0.29 11.2 0.0 2.2 2 0 0 2 2 2 1 Dynamin family AAA_14 PF13173.6 gi|282165091|ref|YP_003357476.1| - 0.013 15.6 0.0 0.044 13.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|282165091|ref|YP_003357476.1| - 0.019 15.5 0.3 0.27 11.8 0.1 2.5 1 1 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|282165091|ref|YP_003357476.1| - 0.061 12.9 0.3 0.14 11.7 0.1 1.7 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|282165091|ref|YP_003357476.1| - 0.077 13.4 0.4 0.19 12.1 0.4 1.9 1 1 1 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|282165091|ref|YP_003357476.1| - 0.11 13.0 0.1 0.22 12.0 0.1 1.6 1 1 0 1 1 1 0 ABC transporter AAA_33 PF13671.6 gi|282165091|ref|YP_003357476.1| - 0.11 12.7 0.2 0.27 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|282165091|ref|YP_003357476.1| - 0.11 12.2 0.2 0.4 10.4 0.1 2.1 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|282165091|ref|YP_003357476.1| - 0.14 11.8 0.8 0.45 10.1 0.3 2.1 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PGM_PMM_I PF02878.16 gi|282165092|ref|YP_003357477.1| - 1.7e-40 137.9 0.1 4.9e-40 136.4 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|282165092|ref|YP_003357477.1| - 6.1e-29 100.5 0.0 1.1e-28 99.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|282165092|ref|YP_003357477.1| - 5.2e-27 94.5 0.1 1.1e-26 93.5 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|282165092|ref|YP_003357477.1| - 2.9e-12 46.6 0.1 1.5e-11 44.3 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain eIF-1a PF01176.19 gi|282165093|ref|YP_003357478.1| - 9.2e-23 79.8 2.9 9.7e-23 79.8 2.3 1.3 1 1 0 1 1 1 1 Translation initiation factor 1A / IF-1 tRNA-synt_1b PF00579.25 gi|282165094|ref|YP_003357479.1| - 5.9e-55 186.6 0.0 7.4e-55 186.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|282165094|ref|YP_003357479.1| - 0.00073 18.5 0.0 0.6 9.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) NVEALA PF14055.6 gi|282165095|ref|YP_003357480.1| - 0.0059 16.5 0.1 0.012 15.5 0.1 1.5 1 0 0 1 1 1 1 NVEALA protein SHE3 PF17078.5 gi|282165095|ref|YP_003357480.1| - 0.012 15.4 0.2 0.017 14.9 0.2 1.2 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 BLOC1_2 PF10046.9 gi|282165095|ref|YP_003357480.1| - 0.049 13.9 1.7 0.095 13.0 0.9 1.8 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Wzz PF02706.15 gi|282165095|ref|YP_003357480.1| - 0.066 13.5 2.1 0.13 12.6 2.1 1.7 1 1 0 1 1 1 0 Chain length determinant protein SLATT_5 PF18160.1 gi|282165095|ref|YP_003357480.1| - 0.17 11.2 3.2 0.27 10.6 3.2 1.4 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 HOOK PF05622.12 gi|282165095|ref|YP_003357480.1| - 0.24 9.5 0.0 0.3 9.2 0.0 1.1 1 0 0 1 1 1 0 HOOK protein Phage_HK97_TLTM PF06120.11 gi|282165096|ref|YP_003357481.1| - 0.00022 20.5 0.1 0.00026 20.3 0.1 1.1 1 0 0 1 1 1 1 Tail length tape measure protein DUF3450 PF11932.8 gi|282165096|ref|YP_003357481.1| - 0.00073 18.9 0.4 0.0018 17.6 0.2 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) HALZ PF02183.18 gi|282165096|ref|YP_003357481.1| - 0.001 19.3 2.4 0.033 14.4 0.5 2.3 1 1 1 2 2 2 2 Homeobox associated leucine zipper HemX PF04375.14 gi|282165096|ref|YP_003357481.1| - 0.0095 15.3 0.0 0.013 14.8 0.0 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase ECSCR PF15820.5 gi|282165096|ref|YP_003357481.1| - 0.015 15.1 0.1 0.29 11.0 0.0 2.2 2 0 0 2 2 2 0 Endothelial cell-specific chemotaxis regulator GOLGA2L5 PF15070.6 gi|282165096|ref|YP_003357481.1| - 0.021 13.5 0.0 0.028 13.1 0.0 1.1 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 YkyA PF10368.9 gi|282165096|ref|YP_003357481.1| - 0.029 14.1 3.6 0.038 13.6 3.6 1.1 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein DUF5344 PF17279.2 gi|282165096|ref|YP_003357481.1| - 0.043 14.4 0.9 0.12 13.0 0.9 1.8 1 1 0 1 1 1 0 Family of unknown function (DUF5344) Bap31_Bap29_C PF18035.1 gi|282165096|ref|YP_003357481.1| - 0.049 13.6 1.1 4.4 7.4 0.3 2.2 1 1 1 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain ZapB PF06005.12 gi|282165096|ref|YP_003357481.1| - 0.053 14.0 0.0 0.23 12.0 0.0 1.9 1 1 0 1 1 1 0 Cell division protein ZapB SLATT_5 PF18160.1 gi|282165096|ref|YP_003357481.1| - 0.055 12.8 0.1 0.083 12.2 0.1 1.3 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 TPR_MLP1_2 PF07926.12 gi|282165096|ref|YP_003357481.1| - 0.067 13.3 0.3 0.097 12.7 0.3 1.1 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF4446 PF14584.6 gi|282165096|ref|YP_003357481.1| - 0.081 12.9 0.4 0.15 12.1 0.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) Sec34 PF04136.15 gi|282165096|ref|YP_003357481.1| - 0.081 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Sec34-like family Zn_peptidase PF04228.13 gi|282165096|ref|YP_003357481.1| - 0.088 12.2 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase Tup_N PF08581.10 gi|282165096|ref|YP_003357481.1| - 0.099 13.0 0.2 0.19 12.1 0.2 1.4 1 0 0 1 1 1 0 Tup N-terminal DivIC PF04977.15 gi|282165096|ref|YP_003357481.1| - 0.099 12.4 0.2 0.2 11.5 0.2 1.5 1 0 0 1 1 1 0 Septum formation initiator bZIP_1 PF00170.21 gi|282165096|ref|YP_003357481.1| - 0.099 12.8 0.1 0.18 12.0 0.1 1.5 1 0 0 1 1 1 0 bZIP transcription factor DUF4472 PF14739.6 gi|282165096|ref|YP_003357481.1| - 0.13 13.0 0.2 0.21 12.4 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4472) CoxIIa PF08113.11 gi|282165096|ref|YP_003357481.1| - 0.19 11.6 0.9 0.35 10.7 0.9 1.4 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IIa family FliD_N PF02465.18 gi|282165096|ref|YP_003357481.1| - 0.39 11.4 6.4 2.2 9.0 6.4 2.0 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus GDPD PF03009.17 gi|282165097|ref|YP_003357482.1| - 4.5e-32 111.8 0.0 3.7e-31 108.8 0.0 1.9 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Lyase_1 PF00206.20 gi|282165098|ref|YP_003357483.1| - 2.5e-55 188.1 0.9 4e-55 187.4 0.9 1.3 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|282165098|ref|YP_003357483.1| - 2.3e-23 82.5 0.8 1.2e-22 80.2 0.1 2.4 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|282165098|ref|YP_003357483.1| - 0.0019 18.3 0.0 0.007 16.4 0.0 2.0 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal ASL_C2 PF14698.6 gi|282165098|ref|YP_003357483.1| - 0.032 15.0 0.1 0.32 11.8 0.0 2.6 3 0 0 3 3 3 0 Argininosuccinate lyase C-terminal FumaraseC_C PF10415.9 gi|282165098|ref|YP_003357483.1| - 0.039 14.4 0.1 0.34 11.4 0.0 2.7 3 0 0 3 3 3 0 Fumarase C C-terminus Glycos_transf_2 PF00535.26 gi|282165099|ref|YP_003357484.1| - 1.6e-14 54.1 0.0 2.1e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 UbiA PF01040.18 gi|282165100|ref|YP_003357485.1| - 2.2e-29 102.5 20.4 3e-29 102.1 20.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family US22 PF02393.16 gi|282165100|ref|YP_003357485.1| - 0.093 13.0 0.0 0.27 11.5 0.0 1.7 1 1 0 1 1 1 0 US22 like DUF5074 PF16819.5 gi|282165101|ref|YP_003357486.1| - 0.0099 15.9 6.2 22 5.1 0.4 4.5 2 2 3 5 5 5 3 Domain of unknown function (DUF5074) PQQ PF01011.21 gi|282165101|ref|YP_003357486.1| - 1.3 9.0 4.2 58 3.9 0.1 4.5 5 0 0 5 5 5 0 PQQ enzyme repeat DUF1743 PF08489.11 gi|282165102|ref|YP_003357487.1| - 1.5e-06 28.3 0.0 0.00017 21.6 0.0 3.0 2 1 1 3 3 3 1 Domain of unknown function (DUF1743) TrmB PF01978.19 gi|282165102|ref|YP_003357487.1| - 0.00073 19.4 0.0 0.0021 17.9 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|282165102|ref|YP_003357487.1| - 0.006 16.6 0.0 0.017 15.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|282165102|ref|YP_003357487.1| - 0.012 15.8 0.0 0.041 14.0 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|282165102|ref|YP_003357487.1| - 0.029 14.2 0.0 0.065 13.0 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_43 PF09904.9 gi|282165102|ref|YP_003357487.1| - 0.075 13.0 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Ig_C17orf99 PF17736.1 gi|282165102|ref|YP_003357487.1| - 0.088 12.9 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 C17orf99 Ig domain MarR_2 PF12802.7 gi|282165102|ref|YP_003357487.1| - 0.091 12.7 0.0 0.28 11.1 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_32 PF13565.6 gi|282165102|ref|YP_003357487.1| - 0.11 13.2 0.1 0.26 12.0 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_26 PF13443.6 gi|282165102|ref|YP_003357487.1| - 0.12 12.8 0.0 0.27 11.7 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Aminotran_5 PF00266.19 gi|282165103|ref|YP_003357488.1| - 2.1e-119 398.8 0.0 2.3e-119 398.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|282165103|ref|YP_003357488.1| - 1.5e-13 50.8 0.1 2.2e-13 50.2 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|282165103|ref|YP_003357488.1| - 3.6e-07 29.1 0.0 7.5e-07 28.0 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|282165103|ref|YP_003357488.1| - 6.1e-05 22.4 0.0 8.3e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SepSecS PF05889.13 gi|282165103|ref|YP_003357488.1| - 0.054 12.2 0.0 0.082 11.6 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Glyoxalase PF00903.25 gi|282165103|ref|YP_003357488.1| - 0.15 12.3 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ThiS PF02597.20 gi|282165104|ref|YP_003357489.1| - 0.00044 20.8 0.0 0.00055 20.5 0.0 1.2 1 0 0 1 1 1 1 ThiS family Methyltransf_25 PF13649.6 gi|282165106|ref|YP_003357491.1| - 9.6e-18 64.7 0.0 2.3e-17 63.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282165106|ref|YP_003357491.1| - 2.8e-13 49.9 0.0 4.2e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282165106|ref|YP_003357491.1| - 2.9e-11 43.9 0.0 4.9e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282165106|ref|YP_003357491.1| - 1.5e-09 37.9 0.0 6.1e-09 35.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282165106|ref|YP_003357491.1| - 3.2e-08 34.2 0.0 8.7e-08 32.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282165106|ref|YP_003357491.1| - 6.3e-07 29.0 0.2 4.7e-05 22.8 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|282165106|ref|YP_003357491.1| - 0.00014 21.4 0.0 0.0002 21.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.11 gi|282165106|ref|YP_003357491.1| - 0.00037 20.2 0.0 0.00053 19.7 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.11 gi|282165106|ref|YP_003357491.1| - 0.00069 19.3 0.0 0.00099 18.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|282165106|ref|YP_003357491.1| - 0.0012 18.3 0.0 0.0016 17.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|282165106|ref|YP_003357491.1| - 0.0014 18.1 0.1 0.0022 17.4 0.1 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_15 PF09445.10 gi|282165106|ref|YP_003357491.1| - 0.0019 17.8 0.1 0.0029 17.2 0.1 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|282165106|ref|YP_003357491.1| - 0.0028 17.5 0.0 0.0052 16.6 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.18 gi|282165106|ref|YP_003357491.1| - 0.0048 16.6 0.8 0.021 14.5 0.0 2.0 1 1 1 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.11 gi|282165106|ref|YP_003357491.1| - 0.011 14.7 0.0 0.025 13.5 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1698) N6_N4_Mtase PF01555.18 gi|282165106|ref|YP_003357491.1| - 0.042 13.6 0.1 0.1 12.3 0.1 1.6 2 0 0 2 2 2 0 DNA methylase Binary_toxB PF03495.14 gi|282165106|ref|YP_003357491.1| - 0.073 13.3 0.0 0.21 11.8 0.0 1.7 2 0 0 2 2 2 0 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain PTS_IIB PF02302.17 gi|282165106|ref|YP_003357491.1| - 0.15 12.7 0.0 33 5.3 0.0 2.4 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit Cons_hypoth95 PF03602.15 gi|282165106|ref|YP_003357491.1| - 0.17 11.5 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 polyprenyl_synt PF00348.17 gi|282165107|ref|YP_003357492.1| - 2.2e-56 190.8 1.8 2.8e-56 190.4 1.8 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Asn_synthase PF00733.21 gi|282165108|ref|YP_003357493.1| - 2.1e-43 149.3 3.4 3.4e-26 92.8 0.6 2.1 1 1 1 2 2 2 2 Asparagine synthase GATase_7 PF13537.6 gi|282165108|ref|YP_003357493.1| - 4.9e-20 71.7 0.0 8.6e-19 67.7 0.0 2.7 2 1 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|282165108|ref|YP_003357493.1| - 2.3e-16 60.2 0.0 8.3e-16 58.4 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain tRNA-synt_2d PF01409.20 gi|282165108|ref|YP_003357493.1| - 0.18 11.3 0.0 0.3 10.5 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) Glu-tRNAGln PF02686.15 gi|282165109|ref|YP_003357494.1| - 5e-23 81.2 0.1 6.5e-23 80.8 0.1 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.21 gi|282165110|ref|YP_003357495.1| - 4.2e-157 523.7 0.0 4.7e-157 523.6 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.15 gi|282165111|ref|YP_003357496.1| - 3.7e-101 338.1 0.0 4.9e-101 337.7 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|282165111|ref|YP_003357496.1| - 9e-38 129.5 0.1 1.4e-37 128.9 0.1 1.3 1 0 0 1 1 1 1 GatB domain Topoisom_bac PF01131.20 gi|282165112|ref|YP_003357497.1| - 2.9e-117 392.2 0.0 4e-117 391.7 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|282165112|ref|YP_003357497.1| - 2.8e-16 59.6 0.2 6.6e-16 58.4 0.2 1.7 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|282165112|ref|YP_003357497.1| - 5.2e-14 51.7 8.5 9e-14 51.0 3.6 2.4 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger DUF2441 PF10386.9 gi|282165112|ref|YP_003357497.1| - 0.0046 16.9 0.0 0.0089 16.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2441) RCR PF12273.8 gi|282165113|ref|YP_003357498.1| - 1.8 9.2 5.7 0.52 11.0 0.9 2.4 2 0 0 2 2 2 0 Chitin synthesis regulation, resistance to Congo red PTS_2-RNA PF01885.16 gi|282165114|ref|YP_003357499.1| - 7.5e-27 94.5 0.0 1e-26 94.1 0.0 1.1 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family RTC PF01137.21 gi|282165115|ref|YP_003357500.1| - 2e-80 269.2 0.1 2.2e-80 269.0 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|282165115|ref|YP_003357500.1| - 1.9e-10 41.1 0.2 4.8e-10 39.9 0.2 1.7 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain LytR_C PF13399.6 gi|282165115|ref|YP_003357500.1| - 0.051 14.6 0.4 0.14 13.1 0.2 1.9 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator PEGA PF08308.11 gi|282165116|ref|YP_003357501.1| - 2e-22 78.8 3.5 5e-12 45.5 0.0 3.4 2 1 1 3 3 3 2 PEGA domain CarboxypepD_reg PF13620.6 gi|282165116|ref|YP_003357501.1| - 6.9e-22 77.5 15.0 6.5e-06 26.3 0.2 5.8 4 1 1 6 6 6 5 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|282165116|ref|YP_003357501.1| - 8.1e-09 35.4 6.8 0.34 10.9 0.0 5.5 4 1 1 5 5 5 3 CarboxypepD_reg-like domain DUF1416 PF07210.12 gi|282165116|ref|YP_003357501.1| - 0.0047 16.8 0.5 1 9.3 0.0 3.2 2 1 0 3 3 3 1 Protein of unknown function (DUF1416) SdrD_B PF17210.3 gi|282165116|ref|YP_003357501.1| - 0.014 15.6 11.0 0.051 13.8 0.2 4.5 4 1 0 4 4 4 0 SdrD B-like domain Dioxygenase_C PF00775.21 gi|282165116|ref|YP_003357501.1| - 0.02 14.4 0.0 2.4 7.5 0.0 2.8 2 0 0 2 2 2 0 Dioxygenase PGF-CTERM PF18204.1 gi|282165117|ref|YP_003357502.1| - 6.4e-09 35.5 2.2 1.4e-08 34.5 2.2 1.6 1 0 0 1 1 1 1 PGF-CTERM motif Big_1 PF02369.16 gi|282165117|ref|YP_003357502.1| - 3.1e-05 23.9 26.1 0.0056 16.7 0.9 6.5 6 1 1 7 7 7 2 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 gi|282165117|ref|YP_003357502.1| - 0.00012 22.3 18.0 0.015 15.5 4.2 4.8 4 1 0 4 4 4 2 Carboxypeptidase regulatory-like domain Invasin_D3 PF09134.10 gi|282165117|ref|YP_003357502.1| - 0.00044 20.5 11.2 0.11 12.9 0.0 3.9 3 1 1 4 4 4 2 Invasin, domain 3 Glyco_hydro2_C5 PF18565.1 gi|282165117|ref|YP_003357502.1| - 0.0032 17.3 0.0 0.34 10.8 0.0 2.8 2 0 0 2 2 2 1 Glycoside hydrolase family 2 C-terminal domain 5 DUF4017 PF13209.6 gi|282165117|ref|YP_003357502.1| - 0.075 13.0 1.0 0.12 12.3 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4017) PhosphMutase PF10143.9 gi|282165118|ref|YP_003357503.1| - 1.7e-52 177.7 0.0 2.4e-52 177.2 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|282165118|ref|YP_003357503.1| - 1.5e-32 112.9 0.0 1.8e-32 112.7 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|282165118|ref|YP_003357503.1| - 0.088 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase GHMP_kinases_N PF00288.26 gi|282165119|ref|YP_003357504.1| - 1e-11 44.9 2.2 2.7e-11 43.6 2.2 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|282165119|ref|YP_003357504.1| - 3e-08 33.9 0.1 8.5e-08 32.5 0.0 1.8 1 1 1 2 2 2 1 GHMP kinases C terminal CENP-M PF11111.8 gi|282165119|ref|YP_003357504.1| - 0.16 11.1 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 Centromere protein M (CENP-M) CBP_BcsO PF17037.5 gi|282165120|ref|YP_003357505.1| - 0.41 10.8 2.1 0.55 10.3 2.1 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsO DUF945 PF06097.11 gi|282165121|ref|YP_003357506.1| - 0.022 13.9 0.1 0.027 13.6 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) NiFeSe_Hases PF00374.19 gi|282165122|ref|YP_003357507.1| - 3.9e-28 98.6 4.5 1.2e-13 50.8 0.0 5.0 3 2 1 5 5 5 5 Nickel-dependent hydrogenase Complex1_49kDa PF00346.19 gi|282165122|ref|YP_003357507.1| - 0.02 14.0 0.1 0.09 11.9 0.0 1.8 2 0 0 2 2 2 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Ephrin_rec_like PF07699.13 gi|282165122|ref|YP_003357507.1| - 0.21 11.3 2.5 1.6 8.6 0.1 2.9 3 0 0 3 3 3 0 Putative ephrin-receptor like Oxidored_q6 PF01058.22 gi|282165123|ref|YP_003357508.1| - 5.7e-23 81.2 0.0 5.7e-23 81.2 0.0 1.8 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|282165123|ref|YP_003357508.1| - 1.3e-13 50.1 17.1 7.8e-09 35.0 4.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282165123|ref|YP_003357508.1| - 1.1e-08 35.0 11.4 1.1e-08 35.0 11.4 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282165123|ref|YP_003357508.1| - 2e-08 34.0 18.7 1.3e-05 25.1 4.2 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282165123|ref|YP_003357508.1| - 2.2e-08 34.6 15.4 5.1e-08 33.4 13.7 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282165123|ref|YP_003357508.1| - 3.1e-08 33.7 10.5 3.1e-08 33.7 10.5 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282165123|ref|YP_003357508.1| - 5.8e-08 33.5 9.0 0.00012 22.9 1.5 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|282165123|ref|YP_003357508.1| - 7.2e-07 28.9 17.4 0.00017 21.5 1.9 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|282165123|ref|YP_003357508.1| - 7.7e-07 29.1 17.1 0.00089 19.6 2.3 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282165123|ref|YP_003357508.1| - 8.6e-07 29.0 13.8 9.7e-07 28.8 9.9 2.8 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282165123|ref|YP_003357508.1| - 0.00017 22.1 11.5 0.045 14.3 2.5 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|282165123|ref|YP_003357508.1| - 0.0042 17.6 19.2 0.025 15.1 2.3 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282165123|ref|YP_003357508.1| - 0.009 16.7 10.3 0.039 14.7 0.9 3.1 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|282165123|ref|YP_003357508.1| - 0.012 16.0 19.8 0.04 14.4 3.5 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282165123|ref|YP_003357508.1| - 2.1 8.5 10.6 16 5.8 9.8 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|282165123|ref|YP_003357508.1| - 6.7 7.6 21.5 0.44 11.4 3.8 3.1 3 1 3 6 6 5 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.13 gi|282165124|ref|YP_003357509.1| - 2.8e-36 124.7 0.0 3.9e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|282165124|ref|YP_003357509.1| - 1.5e-23 82.7 0.0 2.5e-23 82.0 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Methyltransf_11 PF08241.12 gi|282165125|ref|YP_003357510.1| - 4.3e-24 85.0 0.0 6.9e-24 84.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282165125|ref|YP_003357510.1| - 2.1e-20 73.2 0.0 3.7e-20 72.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282165125|ref|YP_003357510.1| - 5e-19 68.7 0.0 5.6e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282165125|ref|YP_003357510.1| - 2.8e-18 66.5 0.0 4.3e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282165125|ref|YP_003357510.1| - 4.4e-17 62.3 0.0 5.2e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282165125|ref|YP_003357510.1| - 1.1e-10 41.3 0.0 1.4e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|282165125|ref|YP_003357510.1| - 2e-06 27.6 0.0 2.7e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.14 gi|282165125|ref|YP_003357510.1| - 4.9e-05 22.9 0.0 8.3e-05 22.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain tRNA_U5-meth_tr PF05958.11 gi|282165125|ref|YP_003357510.1| - 9e-05 21.6 0.0 0.00016 20.8 0.0 1.4 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase PCMT PF01135.19 gi|282165125|ref|YP_003357510.1| - 0.0008 19.2 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.6 gi|282165125|ref|YP_003357510.1| - 0.0012 19.9 0.0 0.002 19.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|282165125|ref|YP_003357510.1| - 0.0018 17.4 0.0 0.0022 17.2 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_32 PF13679.6 gi|282165125|ref|YP_003357510.1| - 0.002 18.2 0.0 0.0026 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|282165125|ref|YP_003357510.1| - 0.0045 16.3 0.0 0.006 15.9 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain PrmA PF06325.13 gi|282165125|ref|YP_003357510.1| - 0.0055 16.1 0.0 0.0068 15.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 gi|282165125|ref|YP_003357510.1| - 0.0085 15.7 0.0 0.011 15.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 gi|282165125|ref|YP_003357510.1| - 0.015 15.2 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain FtsJ PF01728.19 gi|282165125|ref|YP_003357510.1| - 0.06 13.5 0.0 0.29 11.2 0.0 1.9 1 1 0 1 1 1 0 FtsJ-like methyltransferase AviRa PF11599.8 gi|282165125|ref|YP_003357510.1| - 0.092 12.2 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa NNMT_PNMT_TEMT PF01234.17 gi|282165125|ref|YP_003357510.1| - 0.12 11.6 0.0 0.68 9.1 0.0 1.9 1 1 1 2 2 2 0 NNMT/PNMT/TEMT family Methyltrans_SAM PF10672.9 gi|282165125|ref|YP_003357510.1| - 0.17 11.0 0.1 0.24 10.5 0.1 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Radical_SAM PF04055.21 gi|282165126|ref|YP_003357511.1| - 8.4e-18 65.3 0.3 2.8e-17 63.6 0.2 1.8 2 0 0 2 2 2 1 Radical SAM superfamily SinI PF08671.10 gi|282165126|ref|YP_003357511.1| - 0.21 11.4 1.4 3.2 7.6 0.0 3.3 4 0 0 4 4 4 0 Anti-repressor SinI Radical_SAM PF04055.21 gi|282165127|ref|YP_003357512.1| - 1.2e-13 51.8 0.1 1.9e-13 51.2 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|282165128|ref|YP_003357513.1| - 9.1e-12 45.7 0.0 3.3e-11 43.9 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily CofC PF01983.16 gi|282165130|ref|YP_003357515.1| - 1.5e-49 168.1 0.3 1.8e-49 167.8 0.3 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|282165130|ref|YP_003357515.1| - 0.013 15.9 0.0 0.016 15.6 0.0 1.4 1 1 0 1 1 1 0 MobA-like NTP transferase domain DUF1297 PF06973.12 gi|282165132|ref|YP_003357517.1| - 2.9e-77 258.4 0.0 4.1e-77 258.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|282165132|ref|YP_003357517.1| - 2.9e-47 159.6 0.0 4.9e-47 158.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) Amidase PF01425.21 gi|282165132|ref|YP_003357517.1| - 0.23 10.4 0.0 0.34 9.8 0.0 1.2 1 0 0 1 1 1 0 Amidase DUF362 PF04015.12 gi|282165133|ref|YP_003357518.1| - 1.7e-36 126.4 0.0 2.2e-36 126.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Gln-synt_C PF00120.24 gi|282165134|ref|YP_003357519.1| - 1.2e-131 438.8 0.0 1.5e-131 438.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|282165134|ref|YP_003357519.1| - 6.1e-30 102.8 0.1 1.1e-29 102.0 0.1 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain NUDIX PF00293.28 gi|282165135|ref|YP_003357520.1| - 2.4e-17 63.2 0.0 3.1e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|282165135|ref|YP_003357520.1| - 0.00035 20.5 0.0 0.00069 19.6 0.0 1.5 1 1 0 1 1 1 1 NUDIX domain Prenyltrans PF00432.21 gi|282165136|ref|YP_003357521.1| - 3.5e-17 61.8 0.2 2.7e-05 23.8 0.0 6.3 6 0 0 6 6 6 4 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_N PF13249.6 gi|282165136|ref|YP_003357521.1| - 0.0008 18.6 0.0 0.0061 15.7 0.0 2.3 2 0 0 2 2 2 1 Squalene-hopene cyclase N-terminal domain SQHop_cyclase_C PF13243.6 gi|282165136|ref|YP_003357521.1| - 0.0009 18.4 0.0 1.7 7.7 0.0 2.6 2 1 1 3 3 3 3 Squalene-hopene cyclase C-terminal domain TED_complement PF07678.14 gi|282165136|ref|YP_003357521.1| - 0.0028 16.7 0.0 0.66 8.9 0.0 2.7 3 1 0 3 3 3 2 A-macroglobulin TED domain Enolase_C PF00113.22 gi|282165137|ref|YP_003357522.1| - 1.8e-120 401.7 1.4 2.5e-120 401.2 1.4 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|282165137|ref|YP_003357522.1| - 2e-59 199.5 0.4 6.8e-59 197.7 0.1 2.0 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|282165137|ref|YP_003357522.1| - 2.7e-05 23.8 0.0 4.8e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|282165137|ref|YP_003357522.1| - 0.016 15.4 0.2 0.034 14.4 0.2 1.5 1 0 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E1-E2_ATPase PF00122.20 gi|282165138|ref|YP_003357523.1| - 5.4e-44 149.9 0.8 5.4e-44 149.9 0.8 2.6 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|282165138|ref|YP_003357523.1| - 3e-24 86.5 0.1 5.5e-24 85.6 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|282165138|ref|YP_003357523.1| - 6e-05 22.9 0.1 0.00024 20.9 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|282165138|ref|YP_003357523.1| - 7.2e-05 22.4 0.0 0.00028 20.5 0.0 2.0 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Phage_head_fibr PF11133.8 gi|282165138|ref|YP_003357523.1| - 0.006 16.0 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Head fiber protein HAD PF12710.7 gi|282165138|ref|YP_003357523.1| - 0.07 13.5 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Dynamin_N PF00350.23 gi|282165139|ref|YP_003357524.1| - 7.6e-23 81.4 0.1 3.7e-22 79.1 0.0 2.1 2 0 0 2 2 2 1 Dynamin family GTP_EFTU PF00009.27 gi|282165139|ref|YP_003357524.1| - 3.5e-07 30.0 0.1 9.4e-05 22.0 0.0 2.5 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|282165139|ref|YP_003357524.1| - 7.1e-07 29.3 0.0 2.9e-06 27.3 0.0 2.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|282165139|ref|YP_003357524.1| - 7.1e-05 22.8 1.6 2.3 8.1 0.0 3.9 3 1 1 4 4 4 2 RsgA GTPase Septin PF00735.18 gi|282165139|ref|YP_003357524.1| - 0.0017 17.7 0.1 0.015 14.6 0.0 2.4 2 1 0 2 2 2 1 Septin IIGP PF05049.13 gi|282165139|ref|YP_003357524.1| - 0.0021 17.2 0.0 1.8 7.5 0.0 2.5 2 0 0 2 2 2 2 Interferon-inducible GTPase (IIGP) FeoB_N PF02421.18 gi|282165139|ref|YP_003357524.1| - 0.015 14.8 0.0 1.8 8.1 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B PAXIP1_C PF15364.6 gi|282165139|ref|YP_003357524.1| - 0.035 14.4 0.6 0.062 13.6 0.6 1.4 1 0 0 1 1 1 0 PAXIP1-associated-protein-1 C term PTIP binding protein GATase1_like PF07090.11 gi|282165139|ref|YP_003357524.1| - 0.059 12.8 0.0 0.15 11.4 0.0 1.6 1 0 0 1 1 1 0 Putative glutamine amidotransferase Importin_rep_5 PF18816.1 gi|282165139|ref|YP_003357524.1| - 0.13 12.6 0.0 0.85 10.0 0.0 2.4 2 0 0 2 2 2 0 Importin repeat Dna2 PF08696.11 gi|282165139|ref|YP_003357524.1| - 0.18 11.6 1.3 0.71 9.7 0.2 2.0 2 0 0 2 2 2 0 DNA replication factor Dna2 Aldedh PF00171.22 gi|282165139|ref|YP_003357524.1| - 0.62 8.5 2.8 1 7.8 2.8 1.2 1 0 0 1 1 1 0 Aldehyde dehydrogenase family TSNAXIP1_N PF15739.5 gi|282165139|ref|YP_003357524.1| - 4.7 7.6 6.4 3.7 8.0 3.8 2.1 2 0 0 2 2 2 0 Translin-associated factor X-interacting N-terminus GvpK PF05121.12 gi|282165140|ref|YP_003357525.1| - 0.018 15.0 1.0 0.086 12.9 0.8 1.9 2 0 0 2 2 2 0 Gas vesicle protein K IFT46_B_C PF12317.8 gi|282165140|ref|YP_003357525.1| - 0.041 13.6 0.0 0.063 13.0 0.0 1.3 1 1 0 1 1 1 0 Intraflagellar transport complex B protein 46 C terminal MFS_1 PF07690.16 gi|282165141|ref|YP_003357526.1| - 2.7e-37 128.5 40.7 1.1e-24 87.0 15.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|282165141|ref|YP_003357526.1| - 2.4e-05 23.0 10.6 2.4e-05 23.0 10.6 2.0 1 1 1 2 2 2 1 Transmembrane secretion effector MFS_1_like PF12832.7 gi|282165141|ref|YP_003357526.1| - 0.00039 19.4 10.8 0.073 11.9 1.7 4.0 1 1 1 2 2 2 1 MFS_1 like family Fer4_5 PF12801.7 gi|282165142|ref|YP_003357527.1| - 0.82 9.7 0.1 0.82 9.7 0.1 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain ILVD_EDD PF00920.21 gi|282165143|ref|YP_003357528.1| - 1.1e-169 565.4 0.0 1.3e-169 565.2 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family GHMP_kinases_C PF08544.13 gi|282165143|ref|YP_003357528.1| - 0.11 12.8 0.0 4.3 7.8 0.0 2.6 2 0 0 2 2 2 0 GHMP kinases C terminal F420_ligase PF01996.16 gi|282165144|ref|YP_003357529.1| - 1.1e-59 201.7 0.3 1.4e-59 201.4 0.3 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase NUDIX PF00293.28 gi|282165145|ref|YP_003357530.1| - 4.9e-08 33.1 0.0 6e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|282165145|ref|YP_003357530.1| - 0.01 15.8 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 0 NUDIX domain Chordopox_L2 PF05803.12 gi|282165146|ref|YP_003357531.1| - 0.0018 18.1 7.8 0.0026 17.6 5.9 2.1 3 0 0 3 3 3 1 Chordopoxvirus L2 protein ATP-grasp PF02222.22 gi|282165147|ref|YP_003357532.1| - 6.5e-41 139.8 0.0 1.2e-40 138.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|282165147|ref|YP_003357532.1| - 1.4e-08 34.5 0.0 2.4e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|282165147|ref|YP_003357532.1| - 2.2e-05 24.1 0.1 4.4e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain 2-Hacid_dh_C PF02826.19 gi|282165147|ref|YP_003357532.1| - 0.0033 16.8 0.0 0.0067 15.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_4 PF13535.6 gi|282165147|ref|YP_003357532.1| - 0.0073 15.9 0.1 0.044 13.4 0.1 2.2 2 0 0 2 2 2 1 ATP-grasp domain RimK PF08443.11 gi|282165147|ref|YP_003357532.1| - 0.012 15.3 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 RimK-like ATP-grasp domain LAL_C2 PF18603.1 gi|282165147|ref|YP_003357532.1| - 0.015 15.4 0.1 0.06 13.5 0.1 1.9 2 0 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 ATPgrasp_ST PF14397.6 gi|282165147|ref|YP_003357532.1| - 0.021 14.1 0.1 0.063 12.5 0.1 1.7 1 1 0 1 1 1 0 Sugar-transfer associated ATP-grasp DUF448 PF04296.13 gi|282165147|ref|YP_003357532.1| - 0.028 14.3 0.1 3.2 7.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF448) ATPgrasp_N PF18130.1 gi|282165147|ref|YP_003357532.1| - 0.07 13.7 0.2 0.82 10.3 0.0 2.4 2 0 0 2 2 2 0 ATP-grasp N-terminal domain Epimerase PF01370.21 gi|282165147|ref|YP_003357532.1| - 0.097 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family MutS_V PF00488.21 gi|282165148|ref|YP_003357533.1| - 1.6e-19 70.7 0.0 3.7e-19 69.5 0.0 1.6 2 0 0 2 2 2 1 MutS domain V AAA_14 PF13173.6 gi|282165148|ref|YP_003357533.1| - 0.0082 16.2 0.0 0.035 14.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|282165148|ref|YP_003357533.1| - 0.052 14.0 0.0 2 8.9 0.0 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|282165148|ref|YP_003357533.1| - 0.074 13.3 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.21 gi|282165149|ref|YP_003357534.1| - 7.3e-22 78.3 0.1 1.2e-21 77.6 0.1 1.3 1 0 0 1 1 1 1 MutS domain V AAA_27 PF13514.6 gi|282165149|ref|YP_003357534.1| - 0.015 14.9 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|282165149|ref|YP_003357534.1| - 0.016 15.7 0.0 0.03 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|282165149|ref|YP_003357534.1| - 0.1 11.9 0.1 0.21 10.9 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family RNA_helicase PF00910.22 gi|282165149|ref|YP_003357534.1| - 0.11 12.9 0.0 0.24 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.6 gi|282165149|ref|YP_003357534.1| - 0.12 12.2 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Gln-synt_C PF00120.24 gi|282165150|ref|YP_003357535.1| - 1.3e-137 458.4 0.0 1.5e-137 458.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|282165150|ref|YP_003357535.1| - 5.9e-33 112.4 0.1 1.1e-32 111.6 0.1 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|282165150|ref|YP_003357535.1| - 0.03 14.1 0.0 0.61 10.0 0.0 2.4 1 1 0 1 1 1 0 Glutamine synthetase N-terminal domain Glug PF07581.12 gi|282165150|ref|YP_003357535.1| - 0.07 13.6 0.2 0.15 12.5 0.2 1.5 1 0 0 1 1 1 0 The GLUG motif OB_RNB PF08206.11 gi|282165150|ref|YP_003357535.1| - 0.073 12.8 0.1 2.6 7.8 0.0 2.5 2 0 0 2 2 2 0 Ribonuclease B OB domain DUF1297 PF06973.12 gi|282165151|ref|YP_003357536.1| - 4.5e-73 244.8 0.1 1.9e-72 242.8 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|282165151|ref|YP_003357536.1| - 4.9e-44 149.2 0.0 7.3e-44 148.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) DUF1297 PF06973.12 gi|282165152|ref|YP_003357537.1| - 1.3e-76 256.3 0.0 1.8e-76 255.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|282165152|ref|YP_003357537.1| - 3e-46 156.3 0.0 4.9e-46 155.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) Pyr_redox_2 PF07992.14 gi|282165153|ref|YP_003357538.1| - 8.2e-16 58.1 1.5 1.7e-06 27.5 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|282165153|ref|YP_003357538.1| - 5e-10 38.7 0.8 1.2e-05 24.2 0.5 2.1 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|282165153|ref|YP_003357538.1| - 5.9e-10 39.3 0.4 0.00017 21.3 0.1 2.6 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|282165153|ref|YP_003357538.1| - 6.7e-09 35.4 0.0 4.7e-07 29.4 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|282165153|ref|YP_003357538.1| - 1.8e-08 34.8 1.2 0.0054 17.3 0.2 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|282165153|ref|YP_003357538.1| - 2.3e-06 27.0 0.8 0.0039 16.3 0.1 2.5 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.22 gi|282165153|ref|YP_003357538.1| - 1.3e-05 24.5 1.7 0.13 11.3 0.0 3.1 3 0 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|282165153|ref|YP_003357538.1| - 1.9e-05 24.8 0.1 6.4e-05 23.1 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|282165153|ref|YP_003357538.1| - 3.5e-05 23.2 1.1 0.0027 17.0 0.1 2.6 3 0 0 3 3 3 1 Thi4 family NAD_binding_9 PF13454.6 gi|282165153|ref|YP_003357538.1| - 6.8e-05 22.9 0.0 0.21 11.6 0.0 2.2 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|282165153|ref|YP_003357538.1| - 8e-05 22.0 0.1 0.0025 17.1 0.3 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|282165153|ref|YP_003357538.1| - 0.00084 18.5 0.1 0.3 10.1 0.1 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|282165153|ref|YP_003357538.1| - 0.049 12.5 0.2 0.15 10.9 0.1 1.7 2 0 0 2 2 2 0 Tryptophan halogenase Amino_oxidase PF01593.24 gi|282165153|ref|YP_003357538.1| - 0.052 12.8 0.0 1 8.6 0.0 2.3 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase TrkA_N PF02254.18 gi|282165153|ref|YP_003357538.1| - 0.1 12.8 0.1 0.2 11.9 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|282165153|ref|YP_003357538.1| - 0.11 13.0 0.0 0.21 12.1 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 gi|282165154|ref|YP_003357539.1| - 1.2e-11 44.4 2.0 1e-06 28.2 0.0 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|282165154|ref|YP_003357539.1| - 1.1e-07 30.9 0.4 0.012 14.4 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|282165154|ref|YP_003357539.1| - 1.2e-07 31.6 0.6 0.00076 19.2 0.0 2.6 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|282165154|ref|YP_003357539.1| - 1.3e-05 24.6 0.1 0.035 13.4 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.27 gi|282165154|ref|YP_003357539.1| - 2.3e-05 24.9 1.2 0.0035 17.9 0.1 3.0 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|282165154|ref|YP_003357539.1| - 3.3e-05 23.1 1.6 0.047 12.8 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain NAD_binding_9 PF13454.6 gi|282165154|ref|YP_003357539.1| - 0.0014 18.7 0.0 1.1 9.3 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.22 gi|282165154|ref|YP_003357539.1| - 0.0041 16.3 2.6 0.089 11.9 0.0 2.9 3 0 0 3 3 3 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|282165154|ref|YP_003357539.1| - 0.0043 16.4 0.0 0.038 13.3 0.0 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|282165154|ref|YP_003357539.1| - 0.0066 16.6 0.0 0.022 15.0 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|282165154|ref|YP_003357539.1| - 0.0083 15.4 0.2 0.51 9.5 0.3 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|282165154|ref|YP_003357539.1| - 0.12 11.6 1.1 7.9 5.6 0.1 2.6 3 0 0 3 3 3 0 Thi4 family Lycopene_cycl PF05834.12 gi|282165154|ref|YP_003357539.1| - 0.15 11.1 0.1 2.6 7.0 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein APH PF01636.23 gi|282165155|ref|YP_003357540.1| - 9.6e-09 35.5 2.9 9.4e-06 25.7 0.0 2.6 1 1 2 3 3 3 2 Phosphotransferase enzyme family RIO1 PF01163.22 gi|282165155|ref|YP_003357540.1| - 2.6e-07 30.4 0.3 5.5e-07 29.4 0.0 1.6 2 0 0 2 2 2 1 RIO1 family Pkinase PF00069.25 gi|282165155|ref|YP_003357540.1| - 1.6e-06 27.7 0.0 2.4e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|282165155|ref|YP_003357540.1| - 0.00011 21.6 0.4 0.0014 18.0 0.0 2.6 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family WaaY PF06176.11 gi|282165155|ref|YP_003357540.1| - 0.003 17.2 0.1 0.0073 15.9 0.0 1.6 2 0 0 2 2 2 1 Lipopolysaccharide core biosynthesis protein (WaaY) LapA_dom PF06305.11 gi|282165156|ref|YP_003357541.1| - 0.013 15.3 0.3 0.017 14.9 0.3 1.2 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain ABC_membrane_3 PF13748.6 gi|282165156|ref|YP_003357541.1| - 0.044 13.0 0.2 0.044 13.0 0.2 1.1 1 0 0 1 1 1 0 ABC transporter transmembrane region DUF4635 PF15466.6 gi|282165156|ref|YP_003357541.1| - 2.2 7.8 4.4 6.7 6.2 1.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4635) CbiA PF01656.23 gi|282165157|ref|YP_003357542.1| - 2.5e-20 72.8 0.5 3.6e-20 72.3 0.5 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|282165157|ref|YP_003357542.1| - 1.4e-18 67.4 0.4 2.6e-18 66.5 0.4 1.4 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|282165157|ref|YP_003357542.1| - 1.4e-15 57.4 6.1 1.4e-14 54.2 6.1 2.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|282165157|ref|YP_003357542.1| - 3e-14 53.1 3.3 1.6e-13 50.7 3.3 1.8 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|282165157|ref|YP_003357542.1| - 1.1e-13 51.3 0.0 1.1e-12 48.0 0.0 2.0 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|282165157|ref|YP_003357542.1| - 2.2e-05 23.9 0.4 9.5e-05 21.8 0.4 1.9 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|282165157|ref|YP_003357542.1| - 0.0011 18.3 3.4 0.0012 18.2 1.3 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|282165157|ref|YP_003357542.1| - 0.032 13.8 1.4 0.052 13.1 1.4 1.6 1 1 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|282165157|ref|YP_003357542.1| - 0.034 13.4 1.0 0.076 12.3 1.0 1.5 1 0 0 1 1 1 0 VirC1 protein AAA_26 PF13500.6 gi|282165157|ref|YP_003357542.1| - 0.038 13.8 0.4 0.038 13.8 0.4 2.0 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|282165157|ref|YP_003357542.1| - 0.066 12.9 0.6 0.11 12.2 0.6 1.3 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|282165157|ref|YP_003357542.1| - 0.099 12.4 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Ribonuc_2-5A PF06479.12 gi|282165158|ref|YP_003357543.1| - 0.0039 17.3 0.0 0.015 15.5 0.0 1.9 2 0 0 2 2 2 1 Ribonuclease 2-5A DUF2226 PF09987.9 gi|282165159|ref|YP_003357544.1| - 0.037 13.4 0.0 0.29 10.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2226) Robl_LC7 PF03259.17 gi|282165160|ref|YP_003357545.1| - 8.2e-06 25.5 0.1 1.6e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 Roadblock/LC7 domain Robl_LC7 PF03259.17 gi|282165161|ref|YP_003357546.1| - 1.3e-14 53.8 0.9 1.6e-14 53.4 0.9 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|282165161|ref|YP_003357546.1| - 0.00012 21.9 0.1 0.00015 21.5 0.1 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting DUF370 PF04025.12 gi|282165161|ref|YP_003357546.1| - 0.096 12.8 0.3 0.18 12.0 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF370) NiFeSe_Hases PF00374.19 gi|282165162|ref|YP_003357547.1| - 4.6e-37 128.1 0.1 1.1e-18 67.4 0.0 3.0 1 1 1 3 3 3 3 Nickel-dependent hydrogenase Oxidored_q6 PF01058.22 gi|282165163|ref|YP_003357548.1| - 6e-30 103.8 0.1 2.1e-29 102.0 0.0 1.9 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit ATC_hydrolase PF14196.6 gi|282165164|ref|YP_003357549.1| - 0.025 15.3 0.0 0.031 15.0 0.0 1.2 1 0 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Fer4 PF00037.27 gi|282165165|ref|YP_003357550.1| - 1e-12 47.3 16.4 1.9e-06 27.5 4.0 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282165165|ref|YP_003357550.1| - 2.1e-11 43.7 21.3 6.8e-09 35.7 11.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282165165|ref|YP_003357550.1| - 1.5e-09 37.9 9.2 2.1e-09 37.4 9.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282165165|ref|YP_003357550.1| - 5.9e-09 36.4 22.3 6.9e-08 33.0 10.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282165165|ref|YP_003357550.1| - 1.3e-08 34.5 14.0 1.2e-05 25.1 2.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282165165|ref|YP_003357550.1| - 4.2e-08 32.9 14.6 2.5e-05 24.1 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282165165|ref|YP_003357550.1| - 2.9e-07 30.5 12.7 4.1e-07 30.0 12.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282165165|ref|YP_003357550.1| - 5.4e-06 26.8 9.0 0.00098 19.6 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282165165|ref|YP_003357550.1| - 7.2e-06 26.8 8.8 0.0064 17.4 1.5 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|282165165|ref|YP_003357550.1| - 1.9e-05 24.8 9.3 0.0042 17.5 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282165165|ref|YP_003357550.1| - 0.00013 22.3 13.0 0.019 15.4 13.0 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282165165|ref|YP_003357550.1| - 0.0003 21.4 1.0 0.0003 21.4 1.0 2.2 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|282165165|ref|YP_003357550.1| - 0.00052 20.5 12.3 0.0026 18.2 1.2 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|282165165|ref|YP_003357550.1| - 0.0017 19.2 7.2 0.042 14.7 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282165165|ref|YP_003357550.1| - 0.021 15.0 11.8 0.25 11.5 2.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|282165165|ref|YP_003357550.1| - 0.24 12.4 4.6 0.24 12.4 4.6 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|282165165|ref|YP_003357550.1| - 0.4 10.8 6.2 0.42 10.8 2.3 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_19 PF06902.11 gi|282165165|ref|YP_003357550.1| - 0.87 9.7 6.7 2.1 8.5 6.7 1.7 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster DUF678 PF05077.12 gi|282165165|ref|YP_003357550.1| - 1.3 9.2 6.9 0.39 10.9 1.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF678) SprT-like PF10263.9 gi|282165166|ref|YP_003357551.1| - 1.5e-10 40.9 0.0 2.4e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 SprT-like family Desulfoferrod_N PF06397.12 gi|282165166|ref|YP_003357551.1| - 0.021 14.5 2.5 1.3 8.7 0.1 2.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-UBR PF02207.20 gi|282165166|ref|YP_003357551.1| - 0.078 13.1 6.1 0.96 9.7 1.2 2.4 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Rubredoxin_2 PF18073.1 gi|282165166|ref|YP_003357551.1| - 0.088 12.5 6.4 2.3 8.0 1.1 2.8 2 0 0 2 2 2 0 Rubredoxin metal binding domain HypA PF01155.19 gi|282165166|ref|YP_003357551.1| - 0.12 12.4 9.3 0.56 10.2 1.4 2.2 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_SprT PF17283.2 gi|282165166|ref|YP_003357551.1| - 0.23 11.4 18.5 0.15 11.9 4.0 2.8 3 0 0 3 3 2 0 SprT-like zinc ribbon domain DUF2688 PF10892.8 gi|282165166|ref|YP_003357551.1| - 0.32 10.5 2.3 6.8 6.2 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) zf-CSL PF05207.13 gi|282165166|ref|YP_003357551.1| - 2.8 7.7 9.0 66 3.3 8.9 2.4 1 1 0 1 1 1 0 CSL zinc finger Zn-ribbon_8 PF09723.10 gi|282165166|ref|YP_003357551.1| - 3.6 7.8 13.3 0.86 9.8 1.2 2.6 2 0 0 2 2 2 0 Zinc ribbon domain MU117 PF15474.6 gi|282165166|ref|YP_003357551.1| - 5.4 7.9 10.1 0.3 11.9 1.7 2.4 2 1 0 2 2 2 0 Meiotically up-regulated gene family Zn_Tnp_IS91 PF14319.6 gi|282165166|ref|YP_003357551.1| - 9.6 6.3 10.8 19 5.3 0.6 2.4 2 0 0 2 2 2 0 Transposase zinc-binding domain Flavodoxin_3 PF12641.7 gi|282165169|ref|YP_003357554.1| - 9.8e-10 38.4 0.0 1.4e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|282165169|ref|YP_003357554.1| - 1.7e-09 38.0 0.0 2.2e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|282165169|ref|YP_003357554.1| - 0.043 14.0 0.0 9.8 6.4 0.0 2.2 1 1 1 2 2 2 0 Flavodoxin ig PF00047.25 gi|282165169|ref|YP_003357554.1| - 0.046 13.9 0.0 0.073 13.2 0.0 1.3 1 0 0 1 1 1 0 Immunoglobulin domain CxxCxxCC PF03692.15 gi|282165170|ref|YP_003357555.1| - 3.7e-11 43.6 3.8 6.3e-11 42.8 3.8 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain MTHFR_C PF12225.8 gi|282165170|ref|YP_003357555.1| - 0.88 9.3 3.8 4.2 7.1 0.0 2.3 2 0 0 2 2 2 0 Methylene-tetrahydrofolate reductase C terminal zf-AN1 PF01428.16 gi|282165171|ref|YP_003357556.1| - 8.2e-08 32.3 9.0 1.2e-07 31.8 9.0 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger zf-HIT PF04438.16 gi|282165171|ref|YP_003357556.1| - 1.1 9.2 7.6 1.7 8.6 7.6 1.3 1 0 0 1 1 1 0 HIT zinc finger Cupin_2 PF07883.11 gi|282165173|ref|YP_003357558.1| - 1.5e-16 59.8 0.1 2.1e-16 59.4 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|282165173|ref|YP_003357558.1| - 0.00035 20.5 0.0 0.00045 20.1 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|282165173|ref|YP_003357558.1| - 0.00066 19.3 0.0 0.00085 19.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) PCO_ADO PF07847.12 gi|282165173|ref|YP_003357558.1| - 0.052 13.0 0.0 0.066 12.6 0.0 1.2 1 0 0 1 1 1 0 PCO_ADO CENP-C_C PF11699.8 gi|282165173|ref|YP_003357558.1| - 0.055 13.7 0.0 0.069 13.4 0.0 1.3 1 0 0 1 1 1 0 Mif2/CENP-C like GyrI-like PF06445.15 gi|282165174|ref|YP_003357559.1| - 4e-20 72.7 0.0 4.4e-20 72.5 0.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|282165174|ref|YP_003357559.1| - 1.1e-05 25.7 0.0 1.2e-05 25.5 0.0 1.1 1 0 0 1 1 1 1 Integron-associated effector binding protein TrkH PF02386.16 gi|282165175|ref|YP_003357560.1| - 1.5e-62 211.7 20.4 2.2e-61 207.9 20.4 2.1 1 1 0 1 1 1 1 Cation transport protein TrkA_N PF02254.18 gi|282165176|ref|YP_003357561.1| - 3.4e-24 85.3 2.0 5.2e-24 84.7 2.0 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|282165176|ref|YP_003357561.1| - 2.8e-15 55.9 0.7 2.8e-15 55.9 0.7 2.1 2 1 0 2 2 2 1 TrkA-C domain Sacchrp_dh_NADP PF03435.18 gi|282165176|ref|YP_003357561.1| - 1.1e-05 25.7 0.6 1.8e-05 25.0 0.6 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|282165176|ref|YP_003357561.1| - 9.2e-05 22.4 0.1 0.00012 22.0 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_2 PF03446.15 gi|282165176|ref|YP_003357561.1| - 0.00026 21.2 0.1 0.0016 18.6 0.1 2.0 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|282165176|ref|YP_003357561.1| - 0.00035 21.1 0.5 0.0073 16.9 0.1 2.8 1 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|282165176|ref|YP_003357561.1| - 0.00076 19.9 0.2 0.0014 19.1 0.2 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|282165176|ref|YP_003357561.1| - 0.0025 17.2 0.0 0.004 16.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|282165176|ref|YP_003357561.1| - 0.0034 17.9 0.0 0.0049 17.4 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain Shikimate_DH PF01488.20 gi|282165176|ref|YP_003357561.1| - 0.0092 16.0 0.3 0.015 15.3 0.3 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Gp_dh_N PF00044.24 gi|282165176|ref|YP_003357561.1| - 0.012 16.0 0.6 0.023 15.0 0.6 1.7 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Mustang PF15682.5 gi|282165177|ref|YP_003357562.1| - 0.12 12.4 0.0 0.13 12.4 0.0 1.1 1 0 0 1 1 1 0 Musculoskeletal, temporally activated-embryonic nuclear protein 1 Elf1 PF05129.13 gi|282165178|ref|YP_003357563.1| - 0.026 14.6 3.0 0.029 14.4 2.8 1.2 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like tRNA-synt_1f PF01921.18 gi|282165178|ref|YP_003357563.1| - 0.081 11.8 0.3 0.09 11.7 0.3 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (K) Terminase_GpA PF05876.12 gi|282165178|ref|YP_003357563.1| - 0.14 10.6 0.1 0.15 10.6 0.1 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zinc_ribbon_4 PF13717.6 gi|282165178|ref|YP_003357563.1| - 0.64 10.0 6.4 0.22 11.5 4.1 1.4 2 0 0 2 2 2 0 zinc-ribbon domain Phos_pyr_kin PF08543.12 gi|282165179|ref|YP_003357564.1| - 2.1e-85 286.0 1.1 2.4e-85 285.8 1.1 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|282165179|ref|YP_003357564.1| - 3.2e-07 30.0 0.2 4.5e-07 29.5 0.2 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|282165179|ref|YP_003357564.1| - 0.0042 16.5 1.6 0.0079 15.6 1.6 1.5 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family DUF1803 PF08820.10 gi|282165180|ref|YP_003357565.1| - 0.17 12.0 0.0 0.29 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) ABC2_membrane PF01061.24 gi|282165181|ref|YP_003357566.1| - 4.7e-30 104.6 17.9 4.7e-30 104.6 17.9 2.0 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|282165181|ref|YP_003357566.1| - 1.2e-11 44.4 28.6 1.2e-11 44.4 28.6 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|282165182|ref|YP_003357567.1| - 1.8e-33 116.0 0.0 2.5e-33 115.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282165182|ref|YP_003357567.1| - 4.3e-18 66.2 0.0 3.4e-13 50.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|282165182|ref|YP_003357567.1| - 1.4e-07 31.5 0.0 0.0013 18.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|282165182|ref|YP_003357567.1| - 0.00042 20.9 0.2 0.0011 19.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|282165182|ref|YP_003357567.1| - 0.0096 15.9 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 gi|282165182|ref|YP_003357567.1| - 0.013 15.0 0.0 0.29 10.6 0.0 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282165182|ref|YP_003357567.1| - 0.032 14.0 0.0 0.066 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|282165182|ref|YP_003357567.1| - 0.035 14.4 0.4 1.1 9.5 0.3 2.9 2 1 1 3 3 3 0 AAA domain AAA PF00004.29 gi|282165182|ref|YP_003357567.1| - 0.06 13.8 0.2 0.22 12.0 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|282165182|ref|YP_003357567.1| - 0.096 12.4 0.0 2.3 7.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AA_kinase PF00696.28 gi|282165183|ref|YP_003357568.1| - 1.2e-51 175.6 0.2 1.2e-51 175.6 0.2 1.6 2 0 0 2 2 2 1 Amino acid kinase family ACT PF01842.25 gi|282165183|ref|YP_003357568.1| - 1.5e-22 79.1 1.3 7.8e-11 41.5 0.1 3.1 3 0 0 3 3 3 2 ACT domain ACT_7 PF13840.6 gi|282165183|ref|YP_003357568.1| - 9.2e-21 73.4 1.6 5.7e-11 42.0 0.0 3.1 3 0 0 3 3 3 2 ACT domain ACT_6 PF13740.6 gi|282165183|ref|YP_003357568.1| - 0.0034 17.3 0.6 0.16 12.0 0.1 3.2 3 0 0 3 3 3 1 ACT domain SDH_sah PF01972.16 gi|282165184|ref|YP_003357569.1| - 2.6e-111 371.2 0.7 2.8e-111 371.1 0.7 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|282165184|ref|YP_003357569.1| - 0.00079 19.3 0.2 0.0021 18.0 0.0 1.8 3 0 0 3 3 3 1 Clp protease Peptidase_S49 PF01343.18 gi|282165184|ref|YP_003357569.1| - 0.0023 17.9 0.0 0.0053 16.7 0.0 1.6 1 0 0 1 1 1 1 Peptidase family S49 FYVE PF01363.21 gi|282165186|ref|YP_003357571.1| - 0.0039 17.3 2.4 0.0052 16.9 2.4 1.1 1 0 0 1 1 1 1 FYVE zinc finger Tmemb_55A PF09788.9 gi|282165186|ref|YP_003357571.1| - 0.0088 15.2 0.2 0.0098 15.0 0.2 1.0 1 0 0 1 1 1 1 Transmembrane protein 55A TF_Zn_Ribbon PF08271.12 gi|282165186|ref|YP_003357571.1| - 0.011 15.3 0.5 0.016 14.7 0.5 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|282165186|ref|YP_003357571.1| - 0.029 14.3 0.5 0.053 13.5 0.5 1.4 1 0 0 1 1 1 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.12 gi|282165186|ref|YP_003357571.1| - 0.032 14.2 0.7 4.3 7.4 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon M157 PF11624.8 gi|282165186|ref|YP_003357571.1| - 0.15 11.4 1.1 1.2 8.5 0.0 1.9 1 1 1 2 2 2 0 MHC class I-like protein M157 zinc_ribbon_10 PF10058.9 gi|282165186|ref|YP_003357571.1| - 0.31 10.8 3.2 0.75 9.6 3.3 1.6 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein TFIIS_C PF01096.18 gi|282165186|ref|YP_003357571.1| - 0.37 10.7 3.5 14 5.6 3.5 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) ATPase PF06745.13 gi|282165187|ref|YP_003357572.1| - 1.3e-32 113.0 0.0 2e-32 112.4 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|282165187|ref|YP_003357572.1| - 6.5e-06 25.9 0.0 1.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|282165187|ref|YP_003357572.1| - 0.00053 20.0 0.0 0.001 19.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|282165187|ref|YP_003357572.1| - 0.0013 18.5 0.1 0.0029 17.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|282165187|ref|YP_003357572.1| - 0.0013 18.1 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|282165187|ref|YP_003357572.1| - 0.0019 18.0 0.0 0.0029 17.4 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Rad51 PF08423.11 gi|282165187|ref|YP_003357572.1| - 0.0061 15.9 0.3 0.0098 15.2 0.3 1.3 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|282165187|ref|YP_003357572.1| - 0.0089 15.5 0.1 0.014 14.9 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_30 PF13604.6 gi|282165187|ref|YP_003357572.1| - 0.0094 15.7 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|282165187|ref|YP_003357572.1| - 0.01 16.1 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|282165187|ref|YP_003357572.1| - 0.01 14.8 0.1 0.016 14.1 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MEDS PF14417.6 gi|282165187|ref|YP_003357572.1| - 0.014 15.2 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_7 PF12775.7 gi|282165187|ref|YP_003357572.1| - 0.017 14.6 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|282165187|ref|YP_003357572.1| - 0.027 14.9 0.1 0.041 14.3 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain PhoH PF02562.16 gi|282165187|ref|YP_003357572.1| - 0.064 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_5 PF07728.14 gi|282165187|ref|YP_003357572.1| - 0.072 13.1 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|282165187|ref|YP_003357572.1| - 0.081 13.3 0.1 0.17 12.3 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Roc PF08477.13 gi|282165187|ref|YP_003357572.1| - 0.11 12.7 0.0 0.71 10.1 0.0 2.0 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Robl_LC7 PF03259.17 gi|282165188|ref|YP_003357573.1| - 0.0026 17.5 0.2 0.0053 16.5 0.2 1.5 1 1 0 1 1 1 1 Roadblock/LC7 domain SHOCT PF09851.9 gi|282165188|ref|YP_003357573.1| - 0.13 12.1 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 Short C-terminal domain Peptidase_M29 PF02073.15 gi|282165189|ref|YP_003357574.1| - 6.2e-10 38.4 0.3 6.8e-08 31.7 0.0 2.6 2 1 0 2 2 2 2 Thermophilic metalloprotease (M29) HTH_3 PF01381.22 gi|282165190|ref|YP_003357575.1| - 4.4e-10 39.5 0.1 1.9e-09 37.4 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|282165190|ref|YP_003357575.1| - 1.2e-05 25.5 0.0 3.1e-05 24.2 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|282165190|ref|YP_003357575.1| - 6.9e-05 22.8 0.0 0.00016 21.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain PrpR_N PF06506.11 gi|282165190|ref|YP_003357575.1| - 0.00026 20.6 1.4 0.00032 20.3 0.8 1.4 2 0 0 2 2 2 1 Propionate catabolism activator HTH_7 PF02796.15 gi|282165190|ref|YP_003357575.1| - 0.0096 16.0 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_26 PF13443.6 gi|282165190|ref|YP_003357575.1| - 0.041 14.3 0.0 0.086 13.3 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_23 PF13384.6 gi|282165190|ref|YP_003357575.1| - 0.055 13.3 0.0 0.17 11.7 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain NMT1_2 PF13379.6 gi|282165191|ref|YP_003357576.1| - 4.1e-36 125.0 0.0 5.8e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|282165191|ref|YP_003357576.1| - 2.4e-26 93.0 0.0 3.2e-26 92.6 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|282165191|ref|YP_003357576.1| - 9.3e-08 31.8 0.0 2e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|282165191|ref|YP_003357576.1| - 1.1e-07 31.7 0.0 1.6e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein OpuAC PF04069.12 gi|282165191|ref|YP_003357576.1| - 3.5e-06 26.8 0.0 5.4e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system NMT1_3 PF16868.5 gi|282165191|ref|YP_003357576.1| - 0.0004 19.9 0.0 0.00071 19.1 0.0 1.4 1 0 0 1 1 1 1 NMT1-like family DUF3834 PF12916.7 gi|282165191|ref|YP_003357576.1| - 0.00077 18.8 0.0 0.0071 15.6 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF3834) TAT_signal PF10518.9 gi|282165191|ref|YP_003357576.1| - 0.002 17.9 5.7 0.0066 16.3 5.7 1.9 1 1 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Lipoprotein_9 PF03180.14 gi|282165191|ref|YP_003357576.1| - 0.076 12.1 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 NLPA lipoprotein BPD_transp_1 PF00528.22 gi|282165192|ref|YP_003357577.1| - 2.9e-23 82.5 17.9 2.9e-23 82.5 17.9 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|282165193|ref|YP_003357578.1| - 1e-31 110.3 0.0 1.7e-31 109.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282165193|ref|YP_003357578.1| - 6.4e-10 39.3 0.0 9.8e-06 25.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|282165193|ref|YP_003357578.1| - 2e-06 28.3 0.5 3e-05 24.5 0.5 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|282165193|ref|YP_003357578.1| - 3.5e-05 23.7 0.0 0.0039 17.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|282165193|ref|YP_003357578.1| - 3.7e-05 23.3 0.0 0.18 11.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|282165193|ref|YP_003357578.1| - 6.1e-05 23.3 0.1 0.00025 21.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|282165193|ref|YP_003357578.1| - 0.00012 22.1 0.0 0.00024 21.1 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|282165193|ref|YP_003357578.1| - 0.00046 20.2 0.1 0.0012 18.8 0.0 1.7 2 0 0 2 2 1 1 Rad17 P-loop domain MMR_HSR1 PF01926.23 gi|282165193|ref|YP_003357578.1| - 0.00055 20.0 0.0 0.0015 18.6 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|282165193|ref|YP_003357578.1| - 0.00094 19.7 0.1 0.0019 18.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|282165193|ref|YP_003357578.1| - 0.0014 18.3 0.0 0.0028 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|282165193|ref|YP_003357578.1| - 0.0018 18.7 0.1 0.0027 18.1 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|282165193|ref|YP_003357578.1| - 0.0023 17.9 0.2 0.029 14.3 0.0 2.2 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|282165193|ref|YP_003357578.1| - 0.0062 16.5 0.2 0.026 14.4 0.1 2.0 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.6 gi|282165193|ref|YP_003357578.1| - 0.011 16.3 0.2 0.073 13.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|282165193|ref|YP_003357578.1| - 0.012 15.8 0.5 0.046 14.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|282165193|ref|YP_003357578.1| - 0.016 14.4 0.0 0.036 13.3 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Adeno_IVa2 PF02456.15 gi|282165193|ref|YP_003357578.1| - 0.031 13.1 0.0 0.056 12.2 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_5 PF07728.14 gi|282165193|ref|YP_003357578.1| - 0.037 14.0 0.1 0.1 12.6 0.1 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|282165193|ref|YP_003357578.1| - 0.047 14.1 0.1 0.11 12.9 0.1 1.6 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|282165193|ref|YP_003357578.1| - 0.061 13.5 0.2 0.23 11.6 0.1 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|282165193|ref|YP_003357578.1| - 0.062 13.0 0.1 0.16 11.7 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein NTPase_1 PF03266.15 gi|282165193|ref|YP_003357578.1| - 0.086 12.7 0.3 4.1 7.3 0.1 2.3 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.6 gi|282165193|ref|YP_003357578.1| - 0.13 12.0 0.0 0.35 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|282165193|ref|YP_003357578.1| - 0.13 11.9 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|282165193|ref|YP_003357578.1| - 0.13 12.3 0.0 0.46 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|282165194|ref|YP_003357579.1| - 4.4e-58 196.4 0.0 5.5e-58 196.0 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|282165194|ref|YP_003357579.1| - 7.7e-09 35.4 0.0 1.2e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|282165194|ref|YP_003357579.1| - 2.3e-06 27.2 0.0 4.4e-06 26.2 0.0 1.5 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|282165194|ref|YP_003357579.1| - 5.4e-06 25.3 2.1 0.0001 21.1 2.1 2.1 1 1 0 1 1 1 1 GvpD gas vesicle protein T2SSE PF00437.20 gi|282165194|ref|YP_003357579.1| - 0.003 16.7 0.0 0.0054 15.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_11 PF13086.6 gi|282165194|ref|YP_003357579.1| - 0.0061 16.4 0.0 0.0083 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|282165194|ref|YP_003357579.1| - 0.0082 16.4 0.0 0.013 15.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|282165194|ref|YP_003357579.1| - 0.015 15.1 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Rad51 PF08423.11 gi|282165194|ref|YP_003357579.1| - 0.015 14.6 1.0 0.029 13.6 0.5 1.4 1 1 0 1 1 1 0 Rad51 RecA PF00154.21 gi|282165194|ref|YP_003357579.1| - 0.016 14.6 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|282165194|ref|YP_003357579.1| - 0.021 14.5 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|282165194|ref|YP_003357579.1| - 0.023 15.1 0.0 0.035 14.5 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.9 gi|282165194|ref|YP_003357579.1| - 0.039 13.2 0.0 0.055 12.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.6 gi|282165194|ref|YP_003357579.1| - 0.041 14.4 0.4 0.098 13.2 0.4 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|282165194|ref|YP_003357579.1| - 0.045 14.1 0.1 0.086 13.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|282165194|ref|YP_003357579.1| - 0.062 13.7 0.1 0.12 12.8 0.1 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|282165194|ref|YP_003357579.1| - 0.065 13.0 0.4 0.13 12.0 0.4 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|282165194|ref|YP_003357579.1| - 0.088 12.5 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|282165194|ref|YP_003357579.1| - 0.088 12.7 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_14 PF13173.6 gi|282165194|ref|YP_003357579.1| - 0.13 12.2 0.0 0.23 11.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|282165194|ref|YP_003357579.1| - 0.17 12.0 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3325 PF11804.8 gi|282165197|ref|YP_003357582.1| - 0.055 13.6 0.6 0.15 12.2 0.6 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) DUF3488 PF11992.8 gi|282165197|ref|YP_003357582.1| - 0.059 12.3 2.0 0.12 11.4 2.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) DUF5336 PF17270.2 gi|282165197|ref|YP_003357582.1| - 3.8 7.1 6.9 7.9 6.1 0.1 2.8 2 1 1 3 3 3 0 Family of unknown function (DUF5336) DHHC PF01529.20 gi|282165197|ref|YP_003357582.1| - 5.8 7.0 12.4 18 5.4 8.8 2.7 2 1 0 2 2 2 0 DHHC palmitoyltransferase CbiX PF01903.17 gi|282165198|ref|YP_003357583.1| - 1.3e-17 64.1 0.1 1.5e-17 63.9 0.1 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|282165198|ref|YP_003357583.1| - 0.00022 20.6 0.0 0.00026 20.4 0.0 1.2 1 1 0 1 1 1 1 Cobalt chelatase (CbiK) ThiC_Rad_SAM PF01964.18 gi|282165199|ref|YP_003357584.1| - 7.2e-171 568.6 0.1 8e-171 568.4 0.1 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family PEP_mutase PF13714.6 gi|282165199|ref|YP_003357584.1| - 0.0097 15.4 0.1 0.034 13.6 0.0 1.9 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase Lactamase_B PF00753.27 gi|282165200|ref|YP_003357585.1| - 6.2e-33 114.5 3.5 8e-33 114.1 3.5 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|282165200|ref|YP_003357585.1| - 2.7e-07 30.3 0.2 3.7e-07 29.9 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|282165200|ref|YP_003357585.1| - 0.042 13.3 0.1 0.27 10.7 0.1 2.0 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily Cu_amine_oxid PF01179.20 gi|282165200|ref|YP_003357585.1| - 0.15 11.0 0.0 0.37 9.7 0.0 1.6 2 0 0 2 2 2 0 Copper amine oxidase, enzyme domain PGF-CTERM PF18204.1 gi|282165201|ref|YP_003357586.1| - 7.9e-07 28.8 0.2 7.9e-07 28.8 0.2 1.8 2 0 0 2 2 2 1 PGF-CTERM motif GH101_N PF17995.1 gi|282165201|ref|YP_003357586.1| - 0.14 11.8 0.1 0.25 11.0 0.1 1.4 1 0 0 1 1 1 0 Endo-alpha-N-acetylgalactosaminidase N-terminal HTH_AsnC-type PF13404.6 gi|282165202|ref|YP_003357587.1| - 1.2e-12 47.4 0.1 2.2e-12 46.6 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|282165202|ref|YP_003357587.1| - 6.5e-12 45.3 0.0 1.2e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|282165202|ref|YP_003357587.1| - 7.7e-12 44.6 1.5 7.7e-12 44.6 1.5 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|282165202|ref|YP_003357587.1| - 8.5e-07 28.8 0.6 2.9e-06 27.1 0.2 2.1 2 1 1 3 3 2 1 HTH domain HTH_DeoR PF08220.12 gi|282165202|ref|YP_003357587.1| - 6.4e-06 25.8 0.1 3.2e-05 23.6 0.1 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|282165202|ref|YP_003357587.1| - 1.1e-05 25.4 0.0 2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|282165202|ref|YP_003357587.1| - 1.7e-05 24.6 0.2 3e-05 23.8 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|282165202|ref|YP_003357587.1| - 0.0001 22.1 0.0 0.0002 21.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.6 gi|282165202|ref|YP_003357587.1| - 0.00027 20.3 0.0 0.00073 18.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 gi|282165202|ref|YP_003357587.1| - 0.00034 20.4 0.1 0.00076 19.2 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|282165202|ref|YP_003357587.1| - 0.00037 20.2 0.0 0.00069 19.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Mga PF05043.13 gi|282165202|ref|YP_003357587.1| - 0.00037 21.0 1.1 0.0036 17.9 0.2 2.3 2 1 0 2 2 2 1 Mga helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|282165202|ref|YP_003357587.1| - 0.00059 19.9 0.2 0.0009 19.4 0.2 1.6 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_38 PF13936.6 gi|282165202|ref|YP_003357587.1| - 0.0012 18.5 0.1 0.0025 17.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|282165202|ref|YP_003357587.1| - 0.0018 18.2 0.0 0.0078 16.1 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.11 gi|282165202|ref|YP_003357587.1| - 0.0026 17.7 0.2 0.0053 16.8 0.2 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_23 PF13384.6 gi|282165202|ref|YP_003357587.1| - 0.0027 17.5 0.0 0.0051 16.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|282165202|ref|YP_003357587.1| - 0.0047 17.1 0.0 0.011 15.9 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RepL PF05732.11 gi|282165202|ref|YP_003357587.1| - 0.0047 16.4 1.6 0.0091 15.4 0.1 2.0 2 0 0 2 2 2 1 Firmicute plasmid replication protein (RepL) Sigma70_r4 PF04545.16 gi|282165202|ref|YP_003357587.1| - 0.0059 16.1 0.0 0.013 15.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|282165202|ref|YP_003357587.1| - 0.0074 16.2 1.3 0.012 15.6 0.0 2.1 3 0 0 3 3 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|282165202|ref|YP_003357587.1| - 0.012 15.5 0.1 0.023 14.6 0.1 1.4 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.12 gi|282165202|ref|YP_003357587.1| - 0.017 14.8 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 SpoIIID PF12116.8 gi|282165202|ref|YP_003357587.1| - 0.017 15.2 0.0 0.044 13.9 0.0 1.7 1 0 0 1 1 1 0 Stage III sporulation protein D ACT_4 PF13291.6 gi|282165202|ref|YP_003357587.1| - 0.021 15.4 1.8 0.19 12.3 0.2 2.7 2 1 1 3 3 3 0 ACT domain GntR PF00392.21 gi|282165202|ref|YP_003357587.1| - 0.022 14.4 0.0 0.074 12.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family TnsD PF15978.5 gi|282165202|ref|YP_003357587.1| - 0.024 13.6 0.1 0.062 12.3 0.1 1.5 2 0 0 2 2 2 0 Tn7-like transposition protein D Rrf2 PF02082.20 gi|282165202|ref|YP_003357587.1| - 0.029 14.7 0.1 0.053 13.9 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_30 PF13556.6 gi|282165202|ref|YP_003357587.1| - 0.031 14.1 0.0 0.056 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|282165202|ref|YP_003357587.1| - 0.033 14.4 0.1 0.092 12.9 0.0 1.8 2 1 0 2 2 2 0 Helix-turn-helix of insertion element transposase NapD PF03927.13 gi|282165202|ref|YP_003357587.1| - 0.039 14.0 0.0 0.086 12.9 0.0 1.5 1 0 0 1 1 1 0 NapD protein TFIIE_alpha PF02002.17 gi|282165202|ref|YP_003357587.1| - 0.039 13.8 0.2 0.11 12.4 0.2 1.7 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_36 PF13730.6 gi|282165202|ref|YP_003357587.1| - 0.045 13.7 0.1 0.12 12.4 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|282165202|ref|YP_003357587.1| - 0.046 13.4 0.1 0.076 12.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) GerE PF00196.19 gi|282165202|ref|YP_003357587.1| - 0.05 13.2 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_AraC PF00165.23 gi|282165202|ref|YP_003357587.1| - 0.055 13.6 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_9 PF08221.11 gi|282165202|ref|YP_003357587.1| - 0.059 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_47 PF16221.5 gi|282165202|ref|YP_003357587.1| - 0.081 12.5 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 winged helix-turn-helix DUF2089 PF09862.9 gi|282165202|ref|YP_003357587.1| - 0.1 12.6 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_26 PF13443.6 gi|282165202|ref|YP_003357587.1| - 0.11 13.0 0.2 0.31 11.5 0.0 1.9 2 0 0 2 2 1 0 Cro/C1-type HTH DNA-binding domain LPD22 PF18834.1 gi|282165202|ref|YP_003357587.1| - 0.18 12.1 0.0 0.31 11.3 0.0 1.4 1 0 0 1 1 1 0 Large polyvalent protein associated domain 22 CBM_4_9 PF02018.17 gi|282165203|ref|YP_003357588.1| - 3e-05 24.3 0.3 0.00015 22.0 0.3 2.0 2 0 0 2 2 2 1 Carbohydrate binding domain Glyco_hydro_85 PF03644.13 gi|282165203|ref|YP_003357588.1| - 0.0017 17.9 0.0 0.033 13.6 0.0 2.4 2 0 0 2 2 2 1 Glycosyl hydrolase family 85 PA-IIL PF07472.11 gi|282165204|ref|YP_003357589.1| - 0.0004 20.6 3.5 0.37 11.1 0.4 2.7 2 0 0 2 2 2 2 Fucose-binding lectin II (PA-IIL) Cu_bind_like PF02298.17 gi|282165204|ref|YP_003357589.1| - 0.083 12.9 0.4 36 4.5 0.1 3.5 2 2 0 2 2 2 0 Plastocyanin-like domain DUF362 PF04015.12 gi|282165205|ref|YP_003357590.1| - 4.5e-34 118.5 0.1 3e-32 112.5 0.1 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Glycos_transf_1 PF00534.20 gi|282165206|ref|YP_003357591.1| - 2.7e-18 66.1 0.0 4.3e-18 65.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282165206|ref|YP_003357591.1| - 2e-15 57.4 0.0 3.7e-15 56.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282165206|ref|YP_003357591.1| - 4.9e-12 46.2 0.0 7.8e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|282165206|ref|YP_003357591.1| - 8.5e-11 42.5 0.0 1.2e-10 42.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|282165206|ref|YP_003357591.1| - 3.9e-05 24.0 0.0 9e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Prenyltrans PF00432.21 gi|282165207|ref|YP_003357592.1| - 1.8e-06 27.5 0.3 0.0018 17.9 0.0 2.8 2 0 0 2 2 2 2 Prenyltransferase and squalene oxidase repeat TED_complement PF07678.14 gi|282165207|ref|YP_003357592.1| - 0.00023 20.3 0.0 0.051 12.6 0.0 2.7 2 1 1 3 3 3 3 A-macroglobulin TED domain SQHop_cyclase_C PF13243.6 gi|282165207|ref|YP_003357592.1| - 0.00071 18.8 0.4 0.11 11.5 0.0 2.8 1 1 0 2 2 2 2 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 gi|282165207|ref|YP_003357592.1| - 0.0044 16.2 0.0 0.066 12.3 0.0 2.4 2 0 0 2 2 2 1 Squalene-hopene cyclase N-terminal domain Pec_lyase PF09492.10 gi|282165207|ref|YP_003357592.1| - 0.058 12.7 0.0 9.8 5.4 0.0 3.0 3 0 0 3 3 3 0 Pectic acid lyase Glycos_transf_1 PF00534.20 gi|282165208|ref|YP_003357593.1| - 2.6e-41 141.0 0.0 4e-41 140.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282165208|ref|YP_003357593.1| - 2.9e-33 115.1 0.0 5.2e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282165208|ref|YP_003357593.1| - 3.2e-16 59.8 0.3 6.8e-16 58.7 0.3 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|282165208|ref|YP_003357593.1| - 1.1e-09 38.5 0.0 2.6e-09 37.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|282165208|ref|YP_003357593.1| - 1.3e-08 35.5 0.1 4.3e-08 33.7 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|282165209|ref|YP_003357594.1| - 2.2e-30 105.4 0.0 3.5e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282165209|ref|YP_003357594.1| - 7.4e-27 94.4 0.0 1.7e-26 93.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|282165209|ref|YP_003357594.1| - 6.2e-05 23.3 0.0 0.00028 21.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Polysacc_deac_1 PF01522.21 gi|282165210|ref|YP_003357595.1| - 1.6e-05 24.8 0.0 4.9e-05 23.2 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide deacetylase Polysacc_synt_3 PF13440.6 gi|282165211|ref|YP_003357596.1| - 1.2e-14 54.2 26.7 1.2e-14 54.2 26.7 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|282165211|ref|YP_003357596.1| - 7.6e-14 51.7 39.0 7.6e-14 51.7 39.0 2.0 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|282165211|ref|YP_003357596.1| - 1.1e-08 35.3 4.9 1.1e-08 35.3 4.9 4.9 2 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Acetyltransf_6 PF13480.7 gi|282165212|ref|YP_003357597.1| - 0.024 14.8 0.0 0.14 12.3 0.0 2.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain UDPG_MGDP_dh_N PF03721.14 gi|282165214|ref|YP_003357599.1| - 5.6e-52 176.0 0.0 1.1e-51 175.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|282165214|ref|YP_003357599.1| - 1.5e-24 86.0 0.1 2.7e-24 85.2 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|282165214|ref|YP_003357599.1| - 8.6e-21 74.3 0.0 3.1e-20 72.6 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|282165214|ref|YP_003357599.1| - 3.2e-05 24.2 0.0 0.00017 21.8 0.0 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|282165214|ref|YP_003357599.1| - 0.0021 17.7 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|282165214|ref|YP_003357599.1| - 0.0098 16.1 0.3 0.064 13.5 0.0 2.6 2 1 0 2 2 2 1 TrkA-N domain Alpha-mann_mid PF09261.11 gi|282165214|ref|YP_003357599.1| - 0.22 11.7 0.0 0.43 10.8 0.0 1.4 1 0 0 1 1 1 0 Alpha mannosidase middle domain BNR PF02012.20 gi|282165215|ref|YP_003357600.1| - 3.6e-05 23.1 13.3 0.67 10.2 0.1 4.8 4 0 0 4 4 4 3 BNR/Asp-box repeat Sortilin-Vps10 PF15902.5 gi|282165215|ref|YP_003357600.1| - 0.00014 20.8 3.7 0.00041 19.3 0.7 2.1 1 1 0 2 2 2 1 Sortilin, neurotensin receptor 3, BNR_2 PF13088.6 gi|282165215|ref|YP_003357600.1| - 0.0011 18.4 4.8 0.17 11.2 2.7 2.7 1 1 1 2 2 2 2 BNR repeat-like domain DUF5627 PF18620.1 gi|282165215|ref|YP_003357600.1| - 0.034 14.0 0.1 0.18 11.7 0.0 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5627) DUF1616 PF07760.11 gi|282165216|ref|YP_003357601.1| - 1e-86 291.0 2.7 1.2e-86 290.8 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Phage_RpbA PF10789.9 gi|282165216|ref|YP_003357601.1| - 0.19 11.8 0.0 0.61 10.2 0.0 1.7 2 0 0 2 2 2 0 Phage RNA polymerase binding, RpbA SUR7 PF06687.12 gi|282165216|ref|YP_003357601.1| - 0.29 10.7 5.6 0.45 10.1 0.0 2.2 1 1 1 2 2 2 0 SUR7/PalI family Glycos_transf_2 PF00535.26 gi|282165217|ref|YP_003357602.1| - 7.8e-24 84.4 0.1 9.9e-24 84.0 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282165217|ref|YP_003357602.1| - 6.9e-06 26.1 0.0 1.3e-05 25.2 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|282165217|ref|YP_003357602.1| - 0.12 12.9 0.0 0.26 11.8 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 SK_channel PF03530.14 gi|282165217|ref|YP_003357602.1| - 0.3 11.1 2.1 0.58 10.2 2.1 1.4 1 0 0 1 1 1 0 Calcium-activated SK potassium channel DDE_Tnp_1_5 PF13737.6 gi|282165218|ref|YP_003357603.1| - 1.6e-18 67.1 0.0 1.9e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain AsnC_trans_reg PF01037.21 gi|282165219|ref|YP_003357604.1| - 1e-10 41.4 0.0 1.4e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|282165219|ref|YP_003357604.1| - 6.9e-10 38.6 0.0 1.2e-09 37.9 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|282165219|ref|YP_003357604.1| - 6e-08 32.1 0.4 1.1e-07 31.2 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|282165219|ref|YP_003357604.1| - 0.00037 20.3 0.0 0.00069 19.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|282165219|ref|YP_003357604.1| - 0.00067 19.6 0.0 0.0015 18.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.6 gi|282165219|ref|YP_003357604.1| - 0.00098 18.8 0.0 0.0019 17.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|282165219|ref|YP_003357604.1| - 0.0017 18.2 0.1 0.0039 17.1 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|282165219|ref|YP_003357604.1| - 0.018 14.9 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.19 gi|282165219|ref|YP_003357604.1| - 0.029 14.3 0.0 0.12 12.2 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|282165219|ref|YP_003357604.1| - 0.059 13.9 0.1 0.45 11.1 0.0 2.4 3 1 0 3 3 3 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|282165219|ref|YP_003357604.1| - 0.07 13.3 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain NapD PF03927.13 gi|282165219|ref|YP_003357604.1| - 0.12 12.4 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 NapD protein GntR PF00392.21 gi|282165219|ref|YP_003357604.1| - 0.12 12.0 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|282165219|ref|YP_003357604.1| - 0.18 11.9 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|282165220|ref|YP_003357605.1| - 3.3e-12 45.8 0.4 5.1e-12 45.1 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|282165220|ref|YP_003357605.1| - 2.2e-11 43.5 0.0 4.1e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|282165220|ref|YP_003357605.1| - 1.5e-09 37.6 0.1 2.4e-09 36.9 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Mga PF08280.11 gi|282165220|ref|YP_003357605.1| - 9.1e-06 25.6 0.3 3.2e-05 23.9 0.1 2.0 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_DeoR PF08220.12 gi|282165220|ref|YP_003357605.1| - 0.0012 18.6 0.1 0.0027 17.4 0.1 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|282165220|ref|YP_003357605.1| - 0.0016 18.5 0.0 0.0025 17.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain AsnC_trans_reg2 PF17805.1 gi|282165220|ref|YP_003357605.1| - 0.0017 18.5 0.0 0.0032 17.6 0.0 1.5 1 0 0 1 1 1 1 AsnC-like ligand binding domain MarR PF01047.22 gi|282165220|ref|YP_003357605.1| - 0.0039 17.1 0.0 0.0075 16.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|282165220|ref|YP_003357605.1| - 0.011 15.5 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|282165220|ref|YP_003357605.1| - 0.012 15.6 0.2 0.02 14.8 0.2 1.4 1 0 0 1 1 1 0 HTH domain TrmB PF01978.19 gi|282165220|ref|YP_003357605.1| - 0.016 15.1 0.1 0.07 13.0 0.0 2.0 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|282165220|ref|YP_003357605.1| - 0.05 13.4 0.1 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|282165220|ref|YP_003357605.1| - 0.087 12.7 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.10 gi|282165220|ref|YP_003357605.1| - 0.098 12.5 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain ATPase PF06745.13 gi|282165221|ref|YP_003357606.1| - 1.1e-32 113.2 0.0 5.1e-31 107.8 0.0 2.6 2 1 0 2 2 2 1 KaiC RecA PF00154.21 gi|282165221|ref|YP_003357606.1| - 5.5e-07 29.3 0.5 2.6e-05 23.8 0.1 2.3 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|282165221|ref|YP_003357606.1| - 1.7e-06 27.7 0.4 1.3e-05 24.8 0.4 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|282165221|ref|YP_003357606.1| - 0.00016 21.5 0.0 0.00031 20.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein UPF0020 PF01170.18 gi|282165221|ref|YP_003357606.1| - 0.0011 18.8 0.0 0.002 17.9 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 AAA_16 PF13191.6 gi|282165221|ref|YP_003357606.1| - 0.0013 19.1 0.1 0.0025 18.2 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain Zot PF05707.12 gi|282165221|ref|YP_003357606.1| - 0.0029 17.3 0.0 0.005 16.5 0.0 1.3 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) DnaB_C PF03796.15 gi|282165221|ref|YP_003357606.1| - 0.0052 16.2 0.0 0.013 14.8 0.0 1.6 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|282165221|ref|YP_003357606.1| - 0.0097 14.6 0.1 0.029 13.0 0.0 1.7 2 0 0 2 2 2 1 GvpD gas vesicle protein Rad51 PF08423.11 gi|282165221|ref|YP_003357606.1| - 0.012 14.9 0.2 0.14 11.4 0.1 2.2 2 0 0 2 2 2 0 Rad51 AAA_24 PF13479.6 gi|282165221|ref|YP_003357606.1| - 0.014 15.2 0.0 0.033 13.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|282165221|ref|YP_003357606.1| - 0.026 13.8 0.1 0.038 13.2 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|282165221|ref|YP_003357606.1| - 0.044 13.3 0.0 0.096 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region PAXNEB PF05625.11 gi|282165221|ref|YP_003357606.1| - 0.066 12.3 1.4 8.1 5.5 0.0 2.2 2 0 0 2 2 2 0 PAXNEB protein T2SSE PF00437.20 gi|282165221|ref|YP_003357606.1| - 0.074 12.1 0.1 0.12 11.4 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|282165221|ref|YP_003357606.1| - 0.078 13.3 0.0 0.15 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|282165221|ref|YP_003357606.1| - 0.081 12.4 0.1 0.28 10.6 0.1 1.8 2 0 0 2 2 2 0 PhoH-like protein RNA12 PF10443.9 gi|282165221|ref|YP_003357606.1| - 0.093 11.4 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein AAA PF00004.29 gi|282165221|ref|YP_003357606.1| - 0.096 13.1 0.0 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 gi|282165221|ref|YP_003357606.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|282165221|ref|YP_003357606.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase TraB PF01963.17 gi|282165222|ref|YP_003357607.1| - 1.1e-33 117.3 0.1 1.7e-33 116.6 0.1 1.2 1 0 0 1 1 1 1 TraB family LexA_DNA_bind PF01726.16 gi|282165222|ref|YP_003357607.1| - 0.077 12.8 0.0 0.47 10.3 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain ABC2_membrane_3 PF12698.7 gi|282165222|ref|YP_003357607.1| - 5.5 6.0 10.2 11 5.0 10.2 1.4 1 0 0 1 1 1 0 ABC-2 family transporter protein CBS PF00571.28 gi|282165223|ref|YP_003357608.1| - 1.9e-25 89.0 4.7 1.1e-12 48.2 0.2 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|282165223|ref|YP_003357608.1| - 1e-08 34.8 18.6 1.8e-07 30.7 0.4 3.4 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|282165223|ref|YP_003357608.1| - 0.011 15.4 4.9 0.011 15.4 4.9 2.2 2 0 0 2 2 2 0 Peptidase M50B-like DUF202 PF02656.15 gi|282165223|ref|YP_003357608.1| - 3.8 8.0 12.3 4e+03 -1.7 12.3 3.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) PRC PF05239.16 gi|282165224|ref|YP_003357609.1| - 5.7e-14 52.0 0.7 6.7e-14 51.7 0.7 1.1 1 0 0 1 1 1 1 PRC-barrel domain TRAM PF01938.20 gi|282165224|ref|YP_003357609.1| - 0.035 14.1 0.1 0.043 13.8 0.1 1.2 1 0 0 1 1 1 0 TRAM domain MFS_1 PF07690.16 gi|282165225|ref|YP_003357610.1| - 3.4e-50 171.0 46.6 2.2e-27 95.9 27.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|282165225|ref|YP_003357610.1| - 1.3e-10 40.7 30.6 7.3e-08 31.7 13.1 2.0 1 1 1 2 2 2 2 MFS_1 like family MFS_2 PF13347.6 gi|282165225|ref|YP_003357610.1| - 7.5e-08 31.3 35.8 1.1e-07 30.8 35.8 1.3 1 0 0 1 1 1 1 MFS/sugar transport protein LacY_symp PF01306.19 gi|282165225|ref|YP_003357610.1| - 0.00016 20.6 34.5 0.034 12.9 10.8 3.2 2 2 0 2 2 2 2 LacY proton/sugar symporter MFS_3 PF05977.13 gi|282165225|ref|YP_003357610.1| - 0.0004 18.9 11.7 0.0004 18.9 11.7 2.1 1 1 1 2 2 2 1 Transmembrane secretion effector GTA_holin_3TM PF11351.8 gi|282165225|ref|YP_003357610.1| - 0.41 11.2 2.3 0.52 10.9 0.8 2.0 2 0 0 2 2 2 0 Holin of 3TMs, for gene-transfer release Thg1 PF04446.12 gi|282165226|ref|YP_003357611.1| - 5e-21 75.0 0.0 6.8e-21 74.6 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|282165226|ref|YP_003357611.1| - 1.6e-12 47.7 0.3 2.2e-12 47.2 0.3 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain Mac PF12464.8 gi|282165227|ref|YP_003357612.1| - 4.2e-21 74.9 0.2 6.7e-21 74.3 0.2 1.3 1 0 0 1 1 1 1 Maltose acetyltransferase Hexapep PF00132.24 gi|282165227|ref|YP_003357612.1| - 9.6e-13 47.3 11.5 1.2e-10 40.6 9.0 2.6 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|282165227|ref|YP_003357612.1| - 1.8e-08 34.0 6.4 1.8e-08 34.0 6.4 2.4 2 0 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase SAICAR_synt PF01259.18 gi|282165228|ref|YP_003357613.1| - 7.1e-61 206.0 1.5 8.4e-61 205.8 1.5 1.1 1 0 0 1 1 1 1 SAICAR synthetase ACT_7 PF13840.6 gi|282165228|ref|YP_003357613.1| - 0.031 14.1 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 ACT domain cobW PF02492.19 gi|282165229|ref|YP_003357614.1| - 1.5e-24 86.5 0.3 1.9e-24 86.2 0.3 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|282165229|ref|YP_003357614.1| - 1.3e-07 30.9 0.6 0.0068 15.4 0.1 2.1 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|282165229|ref|YP_003357614.1| - 3.1e-06 27.1 0.0 7.2e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.9 gi|282165229|ref|YP_003357614.1| - 0.00036 20.3 1.0 0.054 13.2 0.1 2.2 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation SRP54 PF00448.22 gi|282165229|ref|YP_003357614.1| - 0.00084 19.0 0.1 0.0022 17.7 0.1 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|282165229|ref|YP_003357614.1| - 0.00089 19.2 0.3 0.59 10.0 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase AAA_22 PF13401.6 gi|282165229|ref|YP_003357614.1| - 0.014 15.6 0.0 0.033 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|282165229|ref|YP_003357614.1| - 0.015 14.3 0.1 0.022 13.7 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NTPase_1 PF03266.15 gi|282165229|ref|YP_003357614.1| - 0.021 14.7 0.0 0.047 13.6 0.0 1.6 1 0 0 1 1 1 0 NTPase LpxK PF02606.14 gi|282165229|ref|YP_003357614.1| - 0.054 12.6 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase ATP_bind_1 PF03029.17 gi|282165229|ref|YP_003357614.1| - 0.056 13.2 0.6 0.17 11.7 0.1 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Mg_chelatase PF01078.21 gi|282165229|ref|YP_003357614.1| - 0.099 12.0 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI GTP_EFTU PF00009.27 gi|282165229|ref|YP_003357614.1| - 0.1 12.1 0.6 9.8 5.7 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|282165229|ref|YP_003357614.1| - 0.12 12.7 0.0 0.18 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|282165229|ref|YP_003357614.1| - 0.14 12.0 0.2 0.22 11.4 0.2 1.3 1 0 0 1 1 1 0 NACHT domain Fer4_16 PF13484.6 gi|282165230|ref|YP_003357615.1| - 2.9e-09 37.7 5.1 5.2e-09 36.9 5.1 1.4 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|282165230|ref|YP_003357615.1| - 3e-09 37.3 7.8 4.9e-09 36.6 7.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282165230|ref|YP_003357615.1| - 6e-06 26.1 10.7 0.0025 17.8 4.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282165230|ref|YP_003357615.1| - 2e-05 24.6 7.4 3.6e-05 23.8 7.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282165230|ref|YP_003357615.1| - 0.00012 21.8 12.3 0.0028 17.4 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282165230|ref|YP_003357615.1| - 0.00043 20.4 9.0 0.0048 17.0 9.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|282165230|ref|YP_003357615.1| - 0.019 15.9 11.1 0.4 11.7 3.7 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282165230|ref|YP_003357615.1| - 0.022 14.8 14.2 0.11 12.6 4.7 2.9 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|282165230|ref|YP_003357615.1| - 0.033 14.7 10.4 0.37 11.4 3.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|282165230|ref|YP_003357615.1| - 0.038 14.4 9.0 0.21 12.1 9.1 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282165230|ref|YP_003357615.1| - 0.065 13.4 6.3 0.44 10.7 1.0 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|282165230|ref|YP_003357615.1| - 0.065 13.8 7.5 0.31 11.6 7.6 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282165230|ref|YP_003357615.1| - 6.3 7.0 9.2 11 6.3 2.9 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Hemerythrin PF01814.23 gi|282165231|ref|YP_003357616.1| - 2.7e-19 70.1 4.5 1.5e-13 51.5 0.9 2.1 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain GSDH PF07995.11 gi|282165233|ref|YP_003357618.1| - 3.1e-16 59.6 0.0 7.7e-15 55.0 0.0 2.5 2 1 0 2 2 2 1 Glucose / Sorbosone dehydrogenase NHL PF01436.21 gi|282165233|ref|YP_003357618.1| - 0.0003 20.7 0.3 0.21 11.7 0.0 3.6 3 0 0 3 3 3 2 NHL repeat SGL PF08450.12 gi|282165233|ref|YP_003357618.1| - 0.017 14.7 0.2 0.49 9.9 0.1 2.9 2 1 0 2 2 2 0 SMP-30/Gluconolactonase/LRE-like region DUF4915 PF16261.5 gi|282165233|ref|YP_003357618.1| - 0.029 13.6 0.0 0.042 13.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4915) 2-ph_phosp PF04029.14 gi|282165234|ref|YP_003357619.1| - 1e-39 136.0 0.0 1.4e-39 135.6 0.0 1.1 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase DHHW PF14286.6 gi|282165235|ref|YP_003357620.1| - 0.00039 19.9 0.1 0.00048 19.6 0.1 1.0 1 0 0 1 1 1 1 DHHW protein T2SSF PF00482.23 gi|282165240|ref|YP_003357625.1| - 2.2e-13 50.2 0.8 2.2e-13 50.2 0.8 2.2 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F PHO4 PF01384.20 gi|282165240|ref|YP_003357625.1| - 0.0055 15.8 2.8 0.0083 15.2 2.8 1.2 1 0 0 1 1 1 1 Phosphate transporter family Octopine_DH PF02317.17 gi|282165240|ref|YP_003357625.1| - 0.16 12.1 0.1 0.27 11.3 0.1 1.4 1 0 0 1 1 1 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain DUF2061 PF09834.9 gi|282165240|ref|YP_003357625.1| - 0.61 10.6 4.8 0.67 10.5 2.2 2.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2061) T2SSF PF00482.23 gi|282165241|ref|YP_003357626.1| - 5.4e-06 26.4 0.4 5.4e-06 26.4 0.4 2.1 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F DUF3040 PF11239.8 gi|282165241|ref|YP_003357626.1| - 1.4 9.2 7.0 4.2 7.7 1.9 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) DUF4059 PF13268.6 gi|282165241|ref|YP_003357626.1| - 4.5 7.7 7.7 18 5.8 0.0 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF4059) DUF3953 PF13129.6 gi|282165241|ref|YP_003357626.1| - 7.2 6.5 8.5 11 5.9 2.6 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3953) T2SSE PF00437.20 gi|282165242|ref|YP_003357627.1| - 5e-39 134.0 0.0 7.6e-39 133.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Pox_A32 PF04665.12 gi|282165242|ref|YP_003357627.1| - 0.22 11.0 0.0 0.39 10.1 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein GCHY-1 PF02649.14 gi|282165244|ref|YP_003357629.1| - 7.1e-82 274.8 0.4 8.3e-82 274.6 0.4 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF1319 PF07028.11 gi|282165244|ref|YP_003357629.1| - 0.045 14.0 0.1 0.15 12.3 0.1 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1319) SnoaL PF07366.12 gi|282165244|ref|YP_003357629.1| - 0.08 12.7 0.1 0.45 10.3 0.0 2.3 2 0 0 2 2 2 0 SnoaL-like polyketide cyclase MtrB PF05440.12 gi|282165245|ref|YP_003357630.1| - 0.0025 18.2 0.7 1.7 9.1 0.0 2.2 1 1 1 2 2 2 2 Tetrahydromethanopterin S-methyltransferase subunit B Snapin_Pallidin PF14712.6 gi|282165245|ref|YP_003357630.1| - 0.0096 16.3 0.2 0.019 15.4 0.2 1.4 1 0 0 1 1 1 1 Snapin/Pallidin DUF948 PF06103.11 gi|282165245|ref|YP_003357630.1| - 0.049 13.9 0.0 0.082 13.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) PsbN PF02468.15 gi|282165247|ref|YP_003357632.1| - 0.3 11.0 0.2 0.3 11.0 0.2 2.2 3 0 0 3 3 3 0 Photosystem II reaction centre N protein (psbN) PPC PF04151.15 gi|282165248|ref|YP_003357633.1| - 0.0062 17.6 0.0 0.011 16.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial pre-peptidase C-terminal domain SpoIIM PF01944.17 gi|282165248|ref|YP_003357633.1| - 0.0098 15.9 17.5 0.0098 15.9 17.5 1.9 2 1 0 2 2 2 1 Stage II sporulation protein M ESSS PF10183.9 gi|282165248|ref|YP_003357633.1| - 0.2 11.9 0.1 0.49 10.6 0.1 1.6 1 0 0 1 1 1 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) eRF1_1 PF03463.15 gi|282165249|ref|YP_003357634.1| - 1.4e-25 89.7 0.0 2.4e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|282165249|ref|YP_003357634.1| - 2.3e-24 86.1 0.4 7.2e-24 84.5 0.4 1.9 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|282165249|ref|YP_003357634.1| - 7.2e-14 52.2 0.2 1.5e-13 51.2 0.2 1.6 1 0 0 1 1 1 1 eRF1 domain 2 NBD_C PF17042.5 gi|282165249|ref|YP_003357634.1| - 0.016 15.7 2.2 15 6.1 0.1 3.2 1 1 2 3 3 3 0 Nucleotide-binding C-terminal domain FbpA PF05833.11 gi|282165250|ref|YP_003357635.1| - 1.2e-95 321.0 2.6 1.5e-95 320.6 2.6 1.0 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|282165250|ref|YP_003357635.1| - 5.6e-27 94.5 0.0 1.1e-26 93.6 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|282165250|ref|YP_003357635.1| - 1.4e-05 25.3 0.0 3.8e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain H2TH PF06831.14 gi|282165250|ref|YP_003357635.1| - 0.00073 19.5 0.0 0.0021 18.0 0.0 1.7 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain Ribosomal_S13 PF00416.22 gi|282165250|ref|YP_003357635.1| - 0.039 14.4 0.0 0.17 12.3 0.0 2.1 1 0 0 1 1 1 0 Ribosomal protein S13/S18 MerR-DNA-bind PF09278.11 gi|282165250|ref|YP_003357635.1| - 0.082 13.5 1.1 1.1 9.8 0.0 2.5 2 0 0 2 2 2 0 MerR, DNA binding Response_reg PF00072.24 gi|282165251|ref|YP_003357636.1| - 1.3e-30 105.8 1.1 1.5e-30 105.6 1.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain UPF0180 PF03698.13 gi|282165251|ref|YP_003357636.1| - 0.19 11.9 0.8 0.47 10.6 0.0 2.1 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0180) DUF5305 PF17231.2 gi|282165252|ref|YP_003357637.1| - 1.3 8.4 3.7 0.43 9.9 1.1 1.5 1 1 1 2 2 2 0 Family of unknown function (DUF5305) TPPK_C PF12555.8 gi|282165252|ref|YP_003357637.1| - 1.8 8.7 7.9 0.28 11.2 1.9 2.0 1 1 0 2 2 2 0 Thiamine pyrophosphokinase C terminal DUF1493 PF07377.12 gi|282165253|ref|YP_003357638.1| - 0.15 12.5 0.0 0.24 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1493) IlvN PF07991.12 gi|282165255|ref|YP_003357640.1| - 1.1e-74 249.5 1.7 1.4e-74 249.2 1.7 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|282165255|ref|YP_003357640.1| - 7.5e-64 214.4 0.2 1.1e-63 213.8 0.2 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.15 gi|282165255|ref|YP_003357640.1| - 2e-05 24.8 0.2 3.7e-05 24.0 0.2 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|282165255|ref|YP_003357640.1| - 2.8e-05 23.6 0.0 4.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|282165255|ref|YP_003357640.1| - 0.00022 21.3 0.3 0.00042 20.4 0.3 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|282165255|ref|YP_003357640.1| - 0.00089 19.8 0.1 0.0017 18.9 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Oxidored_nitro PF00148.19 gi|282165255|ref|YP_003357640.1| - 0.015 14.1 0.1 0.019 13.7 0.1 1.4 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|282165255|ref|YP_003357640.1| - 0.083 12.9 0.2 4.8 7.1 0.0 2.6 1 1 2 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|282165255|ref|YP_003357640.1| - 0.12 12.1 0.2 0.26 10.9 0.2 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HTH_10 PF04967.12 gi|282165256|ref|YP_003357641.1| - 3.3e-24 84.4 0.1 5.8e-24 83.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|282165256|ref|YP_003357641.1| - 0.0039 16.7 0.1 0.008 15.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|282165256|ref|YP_003357641.1| - 0.013 15.7 0.0 0.025 14.8 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_17 PF12728.7 gi|282165256|ref|YP_003357641.1| - 0.014 15.6 0.2 0.063 13.5 0.0 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|282165256|ref|YP_003357641.1| - 0.038 13.7 0.5 0.094 12.4 0.5 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.6 gi|282165256|ref|YP_003357641.1| - 0.047 14.2 0.1 0.094 13.2 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|282165256|ref|YP_003357641.1| - 0.068 12.6 0.0 0.17 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 NUMOD1 PF07453.13 gi|282165256|ref|YP_003357641.1| - 0.092 13.0 0.3 0.21 11.9 0.3 1.7 1 0 0 1 1 1 0 NUMOD1 domain HTH_23 PF13384.6 gi|282165256|ref|YP_003357641.1| - 0.099 12.5 0.1 0.32 10.9 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_5 PF01022.20 gi|282165256|ref|YP_003357641.1| - 0.15 12.0 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|282165256|ref|YP_003357641.1| - 0.15 11.9 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 MarR family Arginase PF00491.21 gi|282165257|ref|YP_003357642.1| - 2.3e-72 243.9 0.0 2.6e-72 243.7 0.0 1.0 1 0 0 1 1 1 1 Arginase family HD PF01966.22 gi|282165258|ref|YP_003357643.1| - 1e-10 41.9 0.2 2e-10 41.0 0.2 1.5 1 0 0 1 1 1 1 HD domain HD_assoc PF13286.6 gi|282165258|ref|YP_003357643.1| - 3.8e-09 37.0 0.0 8.6e-09 35.8 0.0 1.7 1 0 0 1 1 1 1 Phosphohydrolase-associated domain DPPIV_rep PF18811.1 gi|282165258|ref|YP_003357643.1| - 0.4 10.7 3.6 1.6 8.8 3.6 2.1 1 0 0 1 1 1 0 Dipeptidyl peptidase IV (DPP IV) low complexity region Thia_YuaJ PF09515.10 gi|282165259|ref|YP_003357644.1| - 0.016 15.3 0.1 0.018 15.1 0.1 1.2 1 0 0 1 1 1 0 Thiamine transporter protein (Thia_YuaJ) Pex14_N PF04695.13 gi|282165259|ref|YP_003357644.1| - 1.4 9.6 3.0 2.7 8.6 3.0 1.7 1 1 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Nre_N PF04894.12 gi|282165260|ref|YP_003357645.1| - 1.2e-94 317.2 0.0 1.5e-94 316.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|282165260|ref|YP_003357645.1| - 1.7e-32 111.6 0.0 2.9e-32 110.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal HupF_HypC PF01455.18 gi|282165262|ref|YP_003357647.1| - 9.7e-23 80.1 0.4 1.3e-22 79.7 0.4 1.2 1 0 0 1 1 1 1 HupF/HypC family HypA PF01155.19 gi|282165263|ref|YP_003357648.1| - 4e-31 107.3 0.4 4.5e-31 107.2 0.4 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|282165263|ref|YP_003357648.1| - 0.0016 18.4 3.8 0.0035 17.3 3.1 1.7 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|282165263|ref|YP_003357648.1| - 0.0042 16.8 6.6 0.0042 16.8 6.6 1.9 2 1 0 2 2 2 1 zinc-ribbon domain NRDD PF13597.6 gi|282165263|ref|YP_003357648.1| - 0.01 14.7 0.3 0.01 14.6 0.3 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase RNA_POL_M_15KD PF02150.16 gi|282165263|ref|YP_003357648.1| - 0.016 15.1 1.3 0.43 10.5 0.0 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit UPF0547 PF10571.9 gi|282165263|ref|YP_003357648.1| - 0.028 14.5 4.2 0.41 10.8 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 CTV_P23 PF04808.12 gi|282165263|ref|YP_003357648.1| - 0.037 13.6 0.0 0.038 13.5 0.0 1.1 1 0 0 1 1 1 0 Citrus tristeza virus (CTV) P23 protein OrfB_Zn_ribbon PF07282.11 gi|282165263|ref|YP_003357648.1| - 0.05 13.5 1.1 0.094 12.7 1.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.6 gi|282165263|ref|YP_003357648.1| - 0.18 11.1 3.8 0.54 9.6 0.4 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-C2H2_3 PF13878.6 gi|282165263|ref|YP_003357648.1| - 0.22 11.4 1.0 2.2 8.1 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf_C2H2_10 PF18414.1 gi|282165263|ref|YP_003357648.1| - 0.5 10.0 7.6 3.3 7.3 1.4 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger CpXC PF14353.6 gi|282165263|ref|YP_003357648.1| - 0.89 9.6 4.6 8.1 6.5 0.5 2.4 1 1 1 2 2 2 0 CpXC protein zf-NADH-PPase PF09297.11 gi|282165263|ref|YP_003357648.1| - 1.1 9.0 6.6 85 2.9 0.0 3.1 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|282165263|ref|YP_003357648.1| - 1.6 8.2 11.0 4.5 6.8 2.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|282165263|ref|YP_003357648.1| - 2.5 8.1 6.6 16 5.6 0.7 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain AIRS_C PF02769.22 gi|282165264|ref|YP_003357649.1| - 4.5e-28 98.3 2.8 7e-28 97.7 2.8 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|282165264|ref|YP_003357649.1| - 9.2e-19 67.9 0.2 2.6e-18 66.5 0.1 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Phage-tail_3 PF13550.6 gi|282165264|ref|YP_003357649.1| - 0.1 12.5 0.2 0.25 11.2 0.1 1.7 2 0 0 2 2 2 0 Putative phage tail protein DUF2703 PF10865.8 gi|282165264|ref|YP_003357649.1| - 0.12 12.5 0.0 0.81 9.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF2703) CarS-like PF01864.17 gi|282165265|ref|YP_003357650.1| - 1.1e-49 168.8 6.9 1.2e-49 168.6 6.9 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|282165265|ref|YP_003357650.1| - 2.1e-07 31.0 0.5 2.1e-07 31.0 0.5 2.0 1 1 1 2 2 2 1 Cytidylyltransferase family Pribosyltran PF00156.27 gi|282165266|ref|YP_003357651.1| - 2.4e-07 30.4 0.2 3.1e-07 30.0 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|282165266|ref|YP_003357651.1| - 0.14 11.6 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase GARS_A PF01071.19 gi|282165267|ref|YP_003357652.1| - 1.1e-55 188.5 0.7 1.5e-55 188.0 0.7 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|282165267|ref|YP_003357652.1| - 6.7e-26 90.9 0.0 1.5e-25 89.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|282165267|ref|YP_003357652.1| - 3.2e-13 49.8 0.0 1.2e-12 47.9 0.0 2.0 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|282165267|ref|YP_003357652.1| - 0.00022 21.3 0.0 0.00056 20.0 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|282165267|ref|YP_003357652.1| - 0.001 18.7 0.3 0.0042 16.7 0.3 2.1 1 1 0 1 1 1 1 ATP-grasp domain Pyr_redox_2 PF07992.14 gi|282165268|ref|YP_003357653.1| - 2.9e-55 187.6 2.7 4.2e-55 187.0 2.7 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|282165268|ref|YP_003357653.1| - 5.8e-21 74.8 0.7 3.1e-17 62.9 0.0 3.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|282165268|ref|YP_003357653.1| - 3.5e-15 56.2 0.0 7.1e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.24 gi|282165268|ref|YP_003357653.1| - 1.3e-13 51.3 0.9 0.0046 16.6 0.0 4.4 3 1 1 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|282165268|ref|YP_003357653.1| - 4.2e-11 42.6 0.0 2.3e-09 37.0 0.0 2.5 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|282165268|ref|YP_003357653.1| - 1.1e-09 37.9 0.0 0.00079 18.6 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|282165268|ref|YP_003357653.1| - 1.6e-08 33.6 0.6 0.27 9.9 0.0 4.6 4 1 1 5 5 5 3 HI0933-like protein Thi4 PF01946.17 gi|282165268|ref|YP_003357653.1| - 9.8e-07 28.2 0.3 0.0013 18.0 0.0 3.1 3 0 0 3 3 3 2 Thi4 family Lycopene_cycl PF05834.12 gi|282165268|ref|YP_003357653.1| - 3.7e-05 23.0 0.4 0.2 10.7 0.0 3.1 3 0 0 3 3 3 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|282165268|ref|YP_003357653.1| - 3.8e-05 23.8 0.0 0.05 13.8 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|282165268|ref|YP_003357653.1| - 0.00013 22.0 3.8 0.74 9.8 0.0 3.7 3 1 1 4 4 4 2 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|282165268|ref|YP_003357653.1| - 0.00046 19.5 0.4 0.011 15.0 0.0 2.6 3 0 0 3 3 3 1 FAD binding domain K_oxygenase PF13434.6 gi|282165268|ref|YP_003357653.1| - 0.0011 18.1 0.0 0.039 13.1 0.0 2.4 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|282165268|ref|YP_003357653.1| - 0.0029 16.5 0.2 1.6 7.5 0.0 3.0 3 0 0 3 3 3 1 Tryptophan halogenase NAD_binding_7 PF13241.6 gi|282165268|ref|YP_003357653.1| - 0.011 16.2 0.1 0.47 10.9 0.0 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding Amino_oxidase PF01593.24 gi|282165268|ref|YP_003357653.1| - 0.032 13.5 0.1 2.6 7.3 0.0 2.2 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|282165268|ref|YP_003357653.1| - 0.089 11.9 2.7 5.5 6.0 0.0 3.8 3 1 1 4 4 4 0 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|282165268|ref|YP_003357653.1| - 0.12 12.2 0.1 0.33 10.8 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HTH_IclR PF09339.10 gi|282165269|ref|YP_003357654.1| - 7.3e-05 22.5 0.0 0.00011 21.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain FaeA PF04703.12 gi|282165269|ref|YP_003357654.1| - 0.0011 19.3 0.0 0.0017 18.6 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein HTH_5 PF01022.20 gi|282165269|ref|YP_003357654.1| - 0.0013 18.5 0.1 0.0022 17.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|282165269|ref|YP_003357654.1| - 0.0066 16.3 0.0 0.0084 16.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|282165269|ref|YP_003357654.1| - 0.007 15.9 0.1 0.011 15.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|282165269|ref|YP_003357654.1| - 0.0096 16.0 0.1 0.021 14.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|282165269|ref|YP_003357654.1| - 0.016 15.0 0.2 0.024 14.5 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|282165269|ref|YP_003357654.1| - 0.076 13.4 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF977 PF06163.11 gi|282165269|ref|YP_003357654.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF977) BRI3BP PF14965.6 gi|282165269|ref|YP_003357654.1| - 0.19 11.2 0.3 0.2 11.2 0.0 1.4 2 0 0 2 2 2 0 Negative regulator of p53/TP53 EPSP_synthase PF00275.20 gi|282165270|ref|YP_003357655.1| - 2e-114 382.5 0.0 2.3e-114 382.3 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Chorismate_synt PF01264.21 gi|282165271|ref|YP_003357656.1| - 2.3e-144 480.1 0.9 2.6e-144 480.0 0.9 1.0 1 0 0 1 1 1 1 Chorismate synthase TPR_12 PF13424.6 gi|282165272|ref|YP_003357657.1| - 1.7e-13 50.7 7.0 1.1e-05 25.7 0.1 4.9 3 1 2 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282165272|ref|YP_003357657.1| - 2e-13 49.3 16.8 0.04 14.0 0.2 7.7 7 1 1 8 8 8 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282165272|ref|YP_003357657.1| - 9.5e-09 34.7 9.2 0.38 10.7 0.1 6.7 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282165272|ref|YP_003357657.1| - 3.3e-08 34.0 15.1 3.1e-05 24.5 0.4 5.8 5 2 1 6 6 5 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282165272|ref|YP_003357657.1| - 1.5e-05 25.4 1.9 0.54 10.8 0.2 4.7 4 2 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282165272|ref|YP_003357657.1| - 2.4e-05 24.0 6.5 8.1 6.7 0.0 7.1 6 1 1 7 7 7 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282165272|ref|YP_003357657.1| - 8.8e-05 23.0 9.2 0.53 11.2 0.6 6.5 6 1 0 6 6 6 1 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|282165272|ref|YP_003357657.1| - 0.00017 21.1 0.4 0.1 12.0 0.0 2.8 1 1 2 3 3 3 3 MalT-like TPR region TPR_8 PF13181.6 gi|282165272|ref|YP_003357657.1| - 0.00065 19.7 14.8 3 8.3 0.0 6.6 8 0 0 8 8 8 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282165272|ref|YP_003357657.1| - 0.0013 19.2 6.6 88 4.1 0.0 7.3 8 1 1 9 9 8 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|282165272|ref|YP_003357657.1| - 0.0062 16.3 0.3 3.8 7.2 0.0 2.7 1 1 1 2 2 2 2 Tetratricopeptide repeat-like domain TPR_4 PF07721.14 gi|282165272|ref|YP_003357657.1| - 0.035 14.7 0.7 39 5.3 0.1 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282165272|ref|YP_003357657.1| - 0.041 13.8 12.3 1.1 9.2 0.0 5.3 7 0 0 7 7 6 0 Tetratricopeptide repeat PknG_TPR PF16918.5 gi|282165272|ref|YP_003357657.1| - 0.07 11.8 0.0 0.26 10.0 0.0 1.9 1 1 0 1 1 1 0 Protein kinase G tetratricopeptide repeat HAD_2 PF13419.6 gi|282165273|ref|YP_003357658.1| - 7.5e-30 104.3 0.0 9.6e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|282165273|ref|YP_003357658.1| - 5.1e-17 62.9 0.9 4.9e-16 59.6 0.9 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|282165273|ref|YP_003357658.1| - 1.5e-07 32.0 0.2 3.1e-07 31.0 0.1 1.5 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|282165273|ref|YP_003357658.1| - 4.9e-05 23.4 0.1 0.00036 20.6 0.1 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|282165273|ref|YP_003357658.1| - 0.059 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase GHMP_kinases_C PF08544.13 gi|282165273|ref|YP_003357658.1| - 0.1 13.0 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 GHMP kinases C terminal ILVD_EDD PF00920.21 gi|282165274|ref|YP_003357659.1| - 1.1e-214 713.8 2.4 1.3e-214 713.6 2.4 1.0 1 0 0 1 1 1 1 Dehydratase family Response_reg PF00072.24 gi|282165275|ref|YP_003357660.1| - 5.7e-13 49.0 0.0 6.1e-13 48.9 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain MarC PF01914.17 gi|282165276|ref|YP_003357661.1| - 2.8e-57 193.4 15.8 3.2e-57 193.2 15.8 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein RseC_MucC PF04246.12 gi|282165276|ref|YP_003357661.1| - 2.9 7.9 8.5 3.2 7.7 0.2 2.6 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC DUF2207 PF09972.9 gi|282165276|ref|YP_003357661.1| - 4.7 5.9 7.9 10 4.7 7.9 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2111 PF09884.9 gi|282165277|ref|YP_003357662.1| - 5.6e-33 112.9 2.3 7e-33 112.6 2.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) ThiS PF02597.20 gi|282165278|ref|YP_003357663.1| - 1.3e-13 51.4 0.0 1.5e-13 51.2 0.0 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|282165278|ref|YP_003357663.1| - 0.11 12.3 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 Mut7-C ubiquitin TGS PF02824.21 gi|282165278|ref|YP_003357663.1| - 0.13 12.4 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 TGS domain Rib_5-P_isom_A PF06026.14 gi|282165279|ref|YP_003357664.1| - 4.6e-57 192.4 0.0 5.6e-57 192.1 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|282165279|ref|YP_003357664.1| - 9.6e-05 22.4 0.2 0.00052 20.0 0.0 2.0 2 0 0 2 2 2 1 DeoR C terminal sensor domain AA_permease_2 PF13520.6 gi|282165280|ref|YP_003357665.1| - 3.5e-54 184.3 49.8 4.1e-54 184.0 49.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|282165280|ref|YP_003357665.1| - 7.4e-34 117.2 45.2 9.8e-34 116.8 45.2 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|282165280|ref|YP_003357665.1| - 1.1e-08 35.0 7.0 1.1e-08 35.0 7.0 3.2 2 0 0 2 2 2 1 C-terminus of AA_permease POR PF01558.18 gi|282165281|ref|YP_003357666.1| - 3.6e-41 141.2 0.2 4.2e-41 140.9 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|282165282|ref|YP_003357667.1| - 7.2e-15 54.1 20.1 1.3e-07 31.2 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282165282|ref|YP_003357667.1| - 2.1e-11 43.8 14.6 2.5e-11 43.5 14.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282165282|ref|YP_003357667.1| - 4.6e-11 43.1 26.8 7.9e-08 32.8 16.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282165282|ref|YP_003357667.1| - 2.5e-09 36.8 17.0 3.5e-05 23.7 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282165282|ref|YP_003357667.1| - 1.5e-07 31.1 14.5 0.00066 19.6 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|282165282|ref|YP_003357667.1| - 2.1e-06 28.6 16.0 0.0008 20.3 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|282165282|ref|YP_003357667.1| - 2.1e-06 27.7 17.4 8.6e-05 22.6 18.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282165282|ref|YP_003357667.1| - 4.2e-06 26.8 16.6 7.6e-06 26.0 16.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282165282|ref|YP_003357667.1| - 4.1e-05 23.8 19.7 0.00029 21.1 4.5 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|282165282|ref|YP_003357667.1| - 0.0004 21.2 11.6 0.0069 17.2 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282165282|ref|YP_003357667.1| - 0.0017 19.1 14.1 0.2 12.4 1.8 2.8 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|282165282|ref|YP_003357667.1| - 0.0018 18.7 16.0 0.027 15.0 3.0 2.3 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282165282|ref|YP_003357667.1| - 0.0055 17.1 17.6 0.22 12.0 17.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|282165282|ref|YP_003357667.1| - 0.0061 17.4 16.4 0.13 13.3 3.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|282165282|ref|YP_003357667.1| - 0.035 14.7 14.5 0.16 12.5 3.4 2.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|282165282|ref|YP_003357667.1| - 3.9 7.7 11.2 2.5 8.3 3.7 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S POR_N PF01855.19 gi|282165283|ref|YP_003357668.1| - 1.4e-72 244.2 1.5 1.8e-72 243.8 1.5 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|282165283|ref|YP_003357668.1| - 5.4e-35 119.8 0.7 1.6e-34 118.2 0.3 2.0 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|282165283|ref|YP_003357668.1| - 3e-07 30.4 0.1 6e-07 29.4 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PikAIV_N PF18605.1 gi|282165283|ref|YP_003357668.1| - 0.21 11.2 0.1 0.21 11.2 0.1 1.6 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain TPP_enzyme_C PF02775.21 gi|282165284|ref|YP_003357669.1| - 2.2e-27 95.7 0.1 3.3e-27 95.1 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IMP_cyclohyd PF07826.11 gi|282165285|ref|YP_003357670.1| - 3.5e-70 235.5 0.0 4.1e-70 235.3 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein HATPase_c PF02518.26 gi|282165286|ref|YP_003357671.1| - 2.1e-28 99.1 0.0 4e-28 98.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|282165286|ref|YP_003357671.1| - 5.1e-19 68.9 0.1 4.4e-14 52.9 0.0 2.3 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|282165286|ref|YP_003357671.1| - 4.6e-16 59.6 0.1 4.5e-09 37.0 0.0 2.3 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.6 gi|282165286|ref|YP_003357671.1| - 3.3e-15 56.6 0.0 5.1e-10 39.8 0.0 2.4 2 0 0 2 2 2 2 GAF domain HisKA PF00512.25 gi|282165286|ref|YP_003357671.1| - 6.2e-12 45.4 0.0 1.7e-11 44.0 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HPTransfase PF10090.9 gi|282165286|ref|YP_003357671.1| - 0.011 15.5 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 Histidine phosphotransferase C-terminal domain Allexi_40kDa PF05549.11 gi|282165286|ref|YP_003357671.1| - 0.044 13.3 0.0 0.15 11.5 0.0 1.8 2 0 0 2 2 2 0 Allexivirus 40kDa protein HATPase_c_3 PF13589.6 gi|282165286|ref|YP_003357671.1| - 0.083 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TFIIB PF00382.19 gi|282165287|ref|YP_003357672.1| - 1.2e-42 143.8 2.0 2e-20 72.6 0.1 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|282165287|ref|YP_003357672.1| - 5.4e-18 64.2 1.8 9.6e-18 63.4 1.8 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|282165287|ref|YP_003357672.1| - 2.3e-05 23.8 0.4 0.029 13.9 0.1 3.5 2 1 0 2 2 2 2 Sigma-70, region 4 Ribosomal_S27e PF01667.17 gi|282165287|ref|YP_003357672.1| - 0.0032 17.2 0.3 0.0069 16.1 0.3 1.5 1 0 0 1 1 1 1 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.11 gi|282165287|ref|YP_003357672.1| - 0.0037 17.1 0.4 0.011 15.7 0.4 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|282165287|ref|YP_003357672.1| - 0.018 15.4 0.5 0.047 14.1 0.2 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar Cyclin_C PF02984.19 gi|282165287|ref|YP_003357672.1| - 0.018 15.1 0.0 3.7 7.7 0.0 2.3 2 0 0 2 2 2 0 Cyclin, C-terminal domain HTH_AsnC-type PF13404.6 gi|282165287|ref|YP_003357672.1| - 0.025 14.4 1.6 0.15 11.9 0.2 2.8 2 1 1 3 3 3 0 AsnC-type helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 gi|282165287|ref|YP_003357672.1| - 0.028 14.4 0.4 0.076 13.0 0.4 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|282165287|ref|YP_003357672.1| - 0.034 13.9 1.6 0.14 11.9 1.6 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain Terminase_GpA PF05876.12 gi|282165287|ref|YP_003357672.1| - 0.044 12.3 0.2 0.066 11.8 0.2 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-ribbon_3 PF13248.6 gi|282165287|ref|YP_003357672.1| - 0.049 13.0 0.4 2.4 7.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|282165287|ref|YP_003357672.1| - 0.14 12.2 0.1 0.32 11.0 0.1 1.6 1 0 0 1 1 1 0 Transposase zinc-binding domain Nudix_N_2 PF14803.6 gi|282165287|ref|YP_003357672.1| - 0.24 11.4 1.5 1.1 9.2 1.5 2.2 1 0 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|282165287|ref|YP_003357672.1| - 0.34 11.0 3.5 2.3 8.4 0.4 2.6 1 1 2 3 3 3 0 Zinc ribbon domain Gar1 PF04410.14 gi|282165288|ref|YP_003357673.1| - 3.2e-12 46.5 0.0 3.4e-12 46.4 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PHP PF02811.19 gi|282165289|ref|YP_003357674.1| - 1.1e-09 38.8 0.0 1.8e-09 38.1 0.0 1.6 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|282165289|ref|YP_003357674.1| - 1.1e-06 28.3 0.0 3.9e-06 26.5 0.0 1.9 1 1 0 1 1 1 1 RNase P subunit p30 TetR_C_1 PF02909.17 gi|282165289|ref|YP_003357674.1| - 0.004 17.0 0.0 0.0076 16.1 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain PhageP22-tail PF09251.10 gi|282165289|ref|YP_003357674.1| - 0.092 11.1 0.0 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 Salmonella phage P22 tail-spike DUF5633 PF18656.1 gi|282165289|ref|YP_003357674.1| - 0.16 11.9 1.9 3.5 7.6 0.0 3.2 3 0 0 3 3 3 0 Family of unknown function (DUF5633) SRP19 PF01922.17 gi|282165290|ref|YP_003357675.1| - 1.4e-17 64.4 0.0 1.6e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein DUF3194 PF11419.8 gi|282165291|ref|YP_003357676.1| - 2.1e-05 24.8 5.1 2.5e-05 24.6 5.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) IF3_N PF05198.16 gi|282165291|ref|YP_003357676.1| - 0.16 12.3 1.0 0.18 12.1 0.2 1.5 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain Prefoldin_2 PF01920.20 gi|282165292|ref|YP_003357677.1| - 4.5e-25 87.6 18.8 5.1e-25 87.5 18.8 1.0 1 0 0 1 1 1 1 Prefoldin subunit LRRFIP PF09738.9 gi|282165292|ref|YP_003357677.1| - 0.0011 18.5 10.7 0.0012 18.4 10.7 1.0 1 0 0 1 1 1 1 LRRFIP family DUF4795 PF16043.5 gi|282165292|ref|YP_003357677.1| - 0.051 13.2 12.6 0.061 12.9 12.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) Seryl_tRNA_N PF02403.22 gi|282165292|ref|YP_003357677.1| - 0.13 12.5 9.7 1.4 9.2 2.0 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Peptidase_C27 PF05407.12 gi|282165292|ref|YP_003357677.1| - 0.14 12.2 0.1 0.17 11.9 0.1 1.2 1 0 0 1 1 1 0 Rubella virus endopeptidase Muted PF14942.6 gi|282165292|ref|YP_003357677.1| - 0.15 12.4 11.2 0.21 11.9 11.2 1.3 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein FlaC_arch PF05377.11 gi|282165292|ref|YP_003357677.1| - 0.16 12.4 5.8 0.21 12.0 0.3 2.7 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF948 PF06103.11 gi|282165292|ref|YP_003357677.1| - 0.18 12.1 7.5 7.7 6.9 7.3 2.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) SMP_2 PF10144.9 gi|282165292|ref|YP_003357677.1| - 0.22 11.2 10.4 0.37 10.4 10.2 1.5 1 1 0 1 1 1 0 Bacterial virulence factor haemolysin RmuC PF02646.16 gi|282165292|ref|YP_003357677.1| - 0.29 10.2 11.8 0.47 9.5 6.1 2.0 1 1 1 2 2 2 0 RmuC family Prefoldin PF02996.17 gi|282165292|ref|YP_003357677.1| - 0.37 10.7 15.7 1.1 9.2 2.4 2.7 1 1 1 2 2 2 0 Prefoldin subunit YqjK PF13997.6 gi|282165292|ref|YP_003357677.1| - 0.44 10.8 4.6 0.075 13.3 1.1 1.5 2 0 0 2 2 1 0 YqjK-like protein DUF2408 PF10303.9 gi|282165292|ref|YP_003357677.1| - 0.59 10.7 8.6 0.78 10.3 8.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) BLOC1_2 PF10046.9 gi|282165292|ref|YP_003357677.1| - 0.6 10.4 11.9 1.9 8.9 1.5 2.2 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlxA PF14282.6 gi|282165292|ref|YP_003357677.1| - 0.96 9.5 21.4 1.4 8.9 10.9 2.2 2 0 0 2 2 2 0 FlxA-like protein ALIX_LYPXL_bnd PF13949.6 gi|282165292|ref|YP_003357677.1| - 0.98 8.6 15.8 30 3.8 15.8 2.0 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV Exonuc_VII_L PF02601.15 gi|282165292|ref|YP_003357677.1| - 1.1 8.8 7.6 1.6 8.2 7.6 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF4407 PF14362.6 gi|282165292|ref|YP_003357677.1| - 1.1 8.6 9.8 1.5 8.1 9.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) GAS PF13851.6 gi|282165292|ref|YP_003357677.1| - 1.3 8.3 18.3 6.1 6.1 18.3 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF3450 PF11932.8 gi|282165292|ref|YP_003357677.1| - 1.3 8.3 21.1 2.3 7.5 9.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) ALMT PF11744.8 gi|282165292|ref|YP_003357677.1| - 1.4 7.6 4.4 1.6 7.5 4.4 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter KfrA_N PF11740.8 gi|282165292|ref|YP_003357677.1| - 1.4 9.6 19.4 4.7 7.9 2.8 2.1 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term Laminin_II PF06009.12 gi|282165292|ref|YP_003357677.1| - 1.6 8.8 12.4 0.78 9.8 3.3 2.0 1 1 1 2 2 2 0 Laminin Domain II AAA_27 PF13514.6 gi|282165292|ref|YP_003357677.1| - 1.7 8.2 8.7 5 6.7 2.5 2.0 1 1 1 2 2 2 0 AAA domain Nup54 PF13874.6 gi|282165292|ref|YP_003357677.1| - 2.2 8.4 13.5 35 4.5 13.5 2.2 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 FUSC PF04632.12 gi|282165292|ref|YP_003357677.1| - 2.4 6.6 5.8 2.7 6.4 5.8 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family PCRF PF03462.18 gi|282165292|ref|YP_003357677.1| - 2.9 7.7 12.1 6.3 6.6 12.1 1.6 1 1 0 1 1 1 0 PCRF domain DUF724 PF05266.14 gi|282165292|ref|YP_003357677.1| - 2.9 7.7 11.7 3.6 7.4 11.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) YojJ PF10372.9 gi|282165292|ref|YP_003357677.1| - 4.1 7.6 10.6 0.91 9.7 1.3 2.4 2 1 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus SecD-TM1 PF13721.6 gi|282165292|ref|YP_003357677.1| - 4.6 7.8 9.2 0.8 10.2 1.3 2.1 1 1 1 2 2 2 0 SecD export protein N-terminal TM region YabA PF06156.13 gi|282165292|ref|YP_003357677.1| - 5.1 7.8 11.4 6.3 7.5 5.0 2.1 1 1 1 2 2 2 0 Initiation control protein YabA PilO PF04350.13 gi|282165292|ref|YP_003357677.1| - 5.2 7.2 12.6 6.3 6.9 1.0 2.1 2 0 0 2 2 2 0 Pilus assembly protein, PilO DUF3053 PF11254.8 gi|282165292|ref|YP_003357677.1| - 5.4 6.5 13.9 3.4 7.2 6.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3053) Spc7 PF08317.11 gi|282165292|ref|YP_003357677.1| - 7.1 5.4 17.7 20 3.9 17.7 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein Occludin_ELL PF07303.13 gi|282165292|ref|YP_003357677.1| - 7.4 7.4 10.0 13 6.6 1.0 2.2 1 1 1 2 2 2 0 Occludin homology domain FapA PF03961.13 gi|282165292|ref|YP_003357677.1| - 8.3 4.9 11.5 24 3.4 11.1 1.7 1 1 0 1 1 1 0 Flagellar Assembly Protein A Pcc1 PF09341.10 gi|282165293|ref|YP_003357678.1| - 2.5e-09 37.2 0.0 2.5e-09 37.1 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 ATP-synt_Eps PF04627.13 gi|282165293|ref|YP_003357678.1| - 0.092 12.8 0.4 0.68 10.0 0.1 2.0 2 0 0 2 2 2 0 Mitochondrial ATP synthase epsilon chain DNA_RNApol_7kD PF03604.13 gi|282165294|ref|YP_003357679.1| - 1.8e-09 37.1 6.0 2.5e-09 36.6 6.0 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|282165294|ref|YP_003357679.1| - 2.9e-05 23.3 0.8 0.006 15.9 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|282165294|ref|YP_003357679.1| - 0.00036 20.5 3.8 0.049 13.6 0.2 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|282165294|ref|YP_003357679.1| - 0.00065 19.2 0.3 0.62 9.7 0.0 2.1 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger Cys_rich_CPXG PF14255.6 gi|282165294|ref|YP_003357679.1| - 0.00079 19.3 2.6 0.11 12.4 0.1 2.1 2 0 0 2 2 2 2 Cysteine-rich CPXCG HypA PF01155.19 gi|282165294|ref|YP_003357679.1| - 0.00088 19.3 0.5 0.00088 19.3 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF951 PF06107.11 gi|282165294|ref|YP_003357679.1| - 0.00094 19.1 0.6 0.24 11.3 0.1 2.0 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF951) Zn-ribbon_8 PF09723.10 gi|282165294|ref|YP_003357679.1| - 0.003 17.6 3.0 0.0048 17.0 3.0 1.4 1 1 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|282165294|ref|YP_003357679.1| - 0.004 16.6 1.1 0.0047 16.4 1.1 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|282165294|ref|YP_003357679.1| - 0.004 17.5 1.2 0.39 11.1 0.1 2.0 1 1 1 2 2 2 1 Restriction alleviation protein Lar DZR PF12773.7 gi|282165294|ref|YP_003357679.1| - 0.0057 16.7 0.9 0.017 15.2 1.1 1.4 1 1 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|282165294|ref|YP_003357679.1| - 0.0084 16.0 2.1 0.014 15.3 2.1 1.5 1 1 0 1 1 1 1 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|282165294|ref|YP_003357679.1| - 0.011 15.6 1.0 0.012 15.4 1.0 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Desulfoferrod_N PF06397.12 gi|282165294|ref|YP_003357679.1| - 0.012 15.2 6.1 0.066 12.8 1.4 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Ogr_Delta PF04606.12 gi|282165294|ref|YP_003357679.1| - 0.021 14.8 2.0 0.26 11.3 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ACC PF17848.1 gi|282165294|ref|YP_003357679.1| - 0.023 14.8 1.1 4.3 7.5 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Elf1 PF05129.13 gi|282165294|ref|YP_003357679.1| - 0.026 14.6 0.4 0.03 14.4 0.4 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like NOB1_Zn_bind PF08772.11 gi|282165294|ref|YP_003357679.1| - 0.028 14.6 0.6 0.033 14.4 0.6 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like YacG PF03884.14 gi|282165294|ref|YP_003357679.1| - 0.03 14.0 0.7 0.51 10.1 0.1 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG zf-Sec23_Sec24 PF04810.15 gi|282165294|ref|YP_003357679.1| - 0.032 14.3 0.2 6.7 6.8 0.1 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Zn_Tnp_IS91 PF14319.6 gi|282165294|ref|YP_003357679.1| - 0.033 14.2 0.9 0.033 14.2 0.9 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF3797 PF12677.7 gi|282165294|ref|YP_003357679.1| - 0.042 13.7 0.5 0.042 13.7 0.5 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) TFIIS_C PF01096.18 gi|282165294|ref|YP_003357679.1| - 0.044 13.7 3.5 3.8 7.4 0.7 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.6 gi|282165294|ref|YP_003357679.1| - 0.045 13.7 5.3 2.3 8.2 5.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-LSD1 PF06943.12 gi|282165294|ref|YP_003357679.1| - 0.047 13.5 4.1 3.5 7.6 0.1 2.2 2 0 0 2 2 2 0 LSD1 zinc finger DUF1451 PF07295.11 gi|282165294|ref|YP_003357679.1| - 0.067 13.2 0.7 0.078 13.0 0.7 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-ISL3 PF14690.6 gi|282165294|ref|YP_003357679.1| - 0.1 13.3 0.9 0.1 13.3 0.9 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.6 gi|282165294|ref|YP_003357679.1| - 0.12 12.2 7.7 1.9 8.3 2.9 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|282165294|ref|YP_003357679.1| - 0.13 12.0 5.3 0.48 10.2 5.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.6 gi|282165294|ref|YP_003357679.1| - 0.14 12.2 2.0 0.64 10.1 0.1 2.0 1 1 1 2 2 2 0 CpXC protein DUF3268 PF11672.8 gi|282165294|ref|YP_003357679.1| - 0.2 12.0 3.1 0.69 10.3 0.1 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain zf-CHCC PF10276.9 gi|282165294|ref|YP_003357679.1| - 0.21 11.7 5.4 0.35 11.0 5.4 1.5 1 1 0 1 1 1 0 Zinc-finger domain zinc_ribbon_10 PF10058.9 gi|282165294|ref|YP_003357679.1| - 0.21 11.4 4.9 1.8 8.4 0.4 2.3 2 1 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein A2L_zn_ribbon PF08792.10 gi|282165294|ref|YP_003357679.1| - 0.23 11.2 2.6 1.6 8.5 3.2 1.8 1 1 1 2 2 2 0 A2L zinc ribbon domain UPF0547 PF10571.9 gi|282165294|ref|YP_003357679.1| - 0.34 11.0 7.3 0.85 9.8 1.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PyrI_C PF02748.15 gi|282165294|ref|YP_003357679.1| - 0.36 10.8 5.3 0.51 10.3 0.2 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Ribosomal_L37ae PF01780.19 gi|282165295|ref|YP_003357680.1| - 4.7e-31 106.7 6.6 5.3e-31 106.6 6.6 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|282165295|ref|YP_003357680.1| - 0.00013 21.8 2.1 0.00021 21.2 2.1 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|282165295|ref|YP_003357680.1| - 0.00091 18.7 0.5 0.0017 17.8 0.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|282165295|ref|YP_003357680.1| - 0.0054 17.1 0.4 0.0085 16.5 0.4 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar C1_1 PF00130.22 gi|282165295|ref|YP_003357680.1| - 0.0068 16.3 1.2 0.011 15.5 1.2 1.3 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Elf1 PF05129.13 gi|282165295|ref|YP_003357680.1| - 0.007 16.4 0.7 0.015 15.3 0.6 1.7 1 1 0 1 1 1 1 Transcription elongation factor Elf1 like zinc_ribbon_2 PF13240.6 gi|282165295|ref|YP_003357680.1| - 0.0075 15.9 2.4 0.7 9.7 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|282165295|ref|YP_003357680.1| - 0.0078 16.1 0.3 0.017 15.0 0.3 1.5 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-H2C2_2 PF13465.6 gi|282165295|ref|YP_003357680.1| - 0.0079 16.6 0.9 3 8.4 0.1 2.3 2 0 0 2 2 2 1 Zinc-finger double domain OrfB_Zn_ribbon PF07282.11 gi|282165295|ref|YP_003357680.1| - 0.011 15.7 0.4 0.019 14.9 0.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.20 gi|282165295|ref|YP_003357680.1| - 0.024 14.7 1.7 3.9 7.6 0.5 2.3 2 0 0 2 2 2 0 Rubredoxin IBR PF01485.21 gi|282165295|ref|YP_003357680.1| - 0.026 14.7 0.5 0.038 14.2 0.5 1.2 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain TFIIS_C PF01096.18 gi|282165295|ref|YP_003357680.1| - 0.032 14.1 2.3 2.2 8.2 0.1 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf_C2H2_10 PF18414.1 gi|282165295|ref|YP_003357680.1| - 0.053 13.1 3.1 2.5 7.7 0.6 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger ADK_lid PF05191.14 gi|282165295|ref|YP_003357680.1| - 0.058 13.4 1.6 5.2 7.1 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF2387 PF09526.10 gi|282165295|ref|YP_003357680.1| - 0.073 13.2 0.1 0.11 12.7 0.1 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zinc_ribbon_10 PF10058.9 gi|282165295|ref|YP_003357680.1| - 0.081 12.7 1.0 1.9 8.3 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-C2H2_3 PF13878.6 gi|282165295|ref|YP_003357680.1| - 0.1 12.5 1.8 4.7 7.1 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-UBP PF02148.19 gi|282165295|ref|YP_003357680.1| - 0.16 12.3 2.6 3.6 8.0 3.2 2.0 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein DUF1610 PF07754.11 gi|282165295|ref|YP_003357680.1| - 0.19 11.7 2.5 0.46 10.5 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rubredoxin_2 PF18073.1 gi|282165295|ref|YP_003357680.1| - 0.25 11.1 4.0 3.3 7.5 0.7 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Sgf11 PF08209.11 gi|282165295|ref|YP_003357680.1| - 0.39 10.3 2.5 0.48 10.0 0.2 2.2 3 0 0 3 3 2 0 Sgf11 (transcriptional regulation protein) HalOD2 PF18547.1 gi|282165295|ref|YP_003357680.1| - 0.43 10.5 8.0 0.36 10.8 2.7 2.4 1 1 1 2 2 2 0 Halobacterial output domain 2 zf-Mss51 PF13824.6 gi|282165295|ref|YP_003357680.1| - 0.44 10.7 3.5 1.2 9.3 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2 PF00096.26 gi|282165295|ref|YP_003357680.1| - 0.48 11.0 3.4 5.8 7.6 0.4 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zn-ribbon_14 PF16503.5 gi|282165295|ref|YP_003357680.1| - 0.5 9.9 5.5 6.3 6.4 1.0 2.2 2 0 0 2 2 2 0 Zinc-ribbon zf-ribbon_3 PF13248.6 gi|282165295|ref|YP_003357680.1| - 0.53 9.8 4.7 2 7.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|282165295|ref|YP_003357680.1| - 0.71 10.0 5.0 2.2 8.4 0.4 2.9 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf-tcix PF14952.6 gi|282165295|ref|YP_003357680.1| - 0.97 9.1 9.0 4.6 6.9 0.8 2.7 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_13 PF09855.9 gi|282165295|ref|YP_003357680.1| - 0.98 9.6 4.6 9.7 6.4 1.0 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Mut7-C PF01927.16 gi|282165295|ref|YP_003357680.1| - 1.1 9.3 4.1 11 6.1 0.2 2.1 1 1 1 2 2 2 0 Mut7-C RNAse domain Prim_Zn_Ribbon PF08273.12 gi|282165295|ref|YP_003357680.1| - 1.2 9.5 8.1 3.7 7.9 8.1 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF4379 PF14311.6 gi|282165295|ref|YP_003357680.1| - 1.6 9.2 6.3 10 6.5 1.0 2.3 1 1 1 2 2 2 0 Probable Zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|282165295|ref|YP_003357680.1| - 2.3 8.2 6.0 0.57 10.1 0.8 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type RNase_PH PF01138.21 gi|282165296|ref|YP_003357681.1| - 2.1e-27 96.2 0.0 3.3e-27 95.6 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|282165296|ref|YP_003357681.1| - 3.4e-11 43.0 0.2 7.8e-11 41.8 0.2 1.7 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|282165297|ref|YP_003357682.1| - 8.5e-34 116.9 0.0 1.2e-33 116.4 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|282165297|ref|YP_003357682.1| - 1.1e-17 63.8 0.4 2.3e-17 62.8 0.4 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 ECR1_N PF14382.6 gi|282165298|ref|YP_003357683.1| - 2.6e-08 33.5 0.1 4.8e-08 32.7 0.1 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_6 PF15985.5 gi|282165298|ref|YP_003357683.1| - 3.4e-08 33.7 0.2 6e-08 32.9 0.2 1.4 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|282165298|ref|YP_003357683.1| - 2.9e-05 24.3 0.0 5.7e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 S1 RNA binding domain KH_1 PF00013.29 gi|282165298|ref|YP_003357683.1| - 4.1e-05 23.3 0.2 0.00011 21.9 0.2 1.8 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|282165298|ref|YP_003357683.1| - 0.00053 19.7 0.4 0.0012 18.6 0.4 1.7 1 1 0 1 1 1 1 KH domain Thioredoxin_9 PF14595.6 gi|282165298|ref|YP_003357683.1| - 0.11 12.3 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 Thioredoxin SBDS PF01172.18 gi|282165299|ref|YP_003357684.1| - 2.3e-23 82.1 0.0 3.7e-23 81.4 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|282165299|ref|YP_003357684.1| - 6.3e-20 71.3 0.0 1e-19 70.7 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.26 gi|282165300|ref|YP_003357685.1| - 4.2e-58 196.0 0.3 5.4e-58 195.6 0.3 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|282165300|ref|YP_003357685.1| - 5.5e-13 48.3 0.2 1.2e-12 47.2 0.2 1.6 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|282165301|ref|YP_003357686.1| - 4.5e-15 55.7 0.1 7.2e-15 55.1 0.1 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family ABC2_membrane PF01061.24 gi|282165302|ref|YP_003357687.1| - 2.1e-44 151.4 23.6 2.1e-44 151.4 23.6 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|282165302|ref|YP_003357687.1| - 2.1e-20 73.2 31.7 2.1e-20 73.2 31.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|282165302|ref|YP_003357687.1| - 1.1e-09 38.0 27.0 5.6e-09 35.7 16.3 2.2 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC_tran PF00005.27 gi|282165303|ref|YP_003357688.1| - 1.6e-34 119.3 0.0 3e-34 118.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282165303|ref|YP_003357688.1| - 1.8e-10 41.2 3.5 1.3e-07 31.7 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|282165303|ref|YP_003357688.1| - 4.8e-09 36.8 1.0 8.3e-09 36.0 0.3 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|282165303|ref|YP_003357688.1| - 2.2e-05 24.4 0.2 0.012 15.3 0.1 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|282165303|ref|YP_003357688.1| - 4.9e-05 23.9 0.4 7.1e-05 23.4 0.4 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|282165303|ref|YP_003357688.1| - 0.00078 18.9 0.0 0.59 9.5 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282165303|ref|YP_003357688.1| - 0.0011 18.7 0.3 0.0022 17.7 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|282165303|ref|YP_003357688.1| - 0.0016 18.9 0.1 0.033 14.6 0.1 2.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|282165303|ref|YP_003357688.1| - 0.025 14.5 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain MutS_V PF00488.21 gi|282165303|ref|YP_003357688.1| - 0.073 13.1 0.4 2.8 7.9 0.0 2.4 2 0 0 2 2 2 0 MutS domain V ACT_4 PF13291.6 gi|282165303|ref|YP_003357688.1| - 0.078 13.6 0.0 0.29 11.7 0.0 1.9 2 0 0 2 2 2 0 ACT domain AAA_27 PF13514.6 gi|282165303|ref|YP_003357688.1| - 0.085 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|282165303|ref|YP_003357688.1| - 0.17 10.5 0.1 5.9 5.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNase_P_p30 PF01876.16 gi|282165304|ref|YP_003357689.1| - 1.8e-40 138.7 0.0 6.2e-40 136.9 0.0 1.7 1 1 0 1 1 1 1 RNase P subunit p30 ORC2 PF04084.14 gi|282165304|ref|YP_003357689.1| - 0.18 10.7 0.0 0.36 9.7 0.0 1.4 1 1 0 1 1 1 0 Origin recognition complex subunit 2 RNA_binding PF01877.17 gi|282165305|ref|YP_003357690.1| - 1.8e-33 115.3 0.0 2.2e-33 115.1 0.0 1.1 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.17 gi|282165306|ref|YP_003357691.1| - 8.8e-80 266.9 9.0 1e-79 266.8 9.0 1.0 1 0 0 1 1 1 1 Ribosomal L15 Oxidored_q6 PF01058.22 gi|282165307|ref|YP_003357692.1| - 6.8e-28 97.1 0.2 7.8e-28 96.9 0.2 1.0 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4_7 PF12838.7 gi|282165308|ref|YP_003357693.1| - 6.4e-11 42.7 27.5 3.2e-09 37.2 9.5 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282165308|ref|YP_003357693.1| - 2.5e-09 36.6 10.9 4.8e-07 29.3 2.1 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282165308|ref|YP_003357693.1| - 5.9e-09 35.9 7.8 5.9e-09 35.9 7.8 2.6 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282165308|ref|YP_003357693.1| - 8.3e-09 36.3 9.8 4e-05 24.5 5.2 3.0 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|282165308|ref|YP_003357693.1| - 1.2e-08 34.9 22.1 2.8e-06 27.4 11.1 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282165308|ref|YP_003357693.1| - 3.1e-07 30.7 10.1 0.0079 16.6 0.1 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282165308|ref|YP_003357693.1| - 1.7e-06 28.1 5.8 1.7e-06 28.1 5.8 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282165308|ref|YP_003357693.1| - 3.5e-05 23.7 9.9 0.0011 18.9 2.0 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282165308|ref|YP_003357693.1| - 3.7e-05 24.2 13.9 0.0052 17.3 0.3 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282165308|ref|YP_003357693.1| - 0.00011 22.9 7.0 0.019 15.7 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|282165308|ref|YP_003357693.1| - 0.0018 19.1 22.5 0.014 16.3 3.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|282165308|ref|YP_003357693.1| - 0.0019 19.0 12.9 0.043 14.7 0.1 3.1 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282165308|ref|YP_003357693.1| - 0.0027 17.7 20.9 0.03 14.4 2.1 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain T2SSE PF00437.20 gi|282165308|ref|YP_003357693.1| - 0.036 13.1 0.0 0.046 12.8 0.0 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein Fer4_4 PF12800.7 gi|282165308|ref|YP_003357693.1| - 0.071 13.7 1.1 0.071 13.7 1.1 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|282165308|ref|YP_003357693.1| - 1.3 9.6 15.1 0.42 11.2 1.7 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I NADHdh PF00146.21 gi|282165309|ref|YP_003357694.1| - 3e-55 187.6 23.8 3.7e-55 187.4 23.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|282165310|ref|YP_003357695.1| - 1.5e-63 214.5 0.0 1.5e-45 155.4 0.1 2.3 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|282165310|ref|YP_003357695.1| - 5.5e-16 59.3 0.0 4.1e-15 56.5 0.0 2.2 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|282165310|ref|YP_003357695.1| - 2.6e-11 43.1 3.7 8.9e-10 38.1 0.1 2.9 3 0 0 3 3 3 2 Nickel-dependent hydrogenase CCG PF02754.16 gi|282165312|ref|YP_003357697.1| - 9.7e-24 83.4 0.5 9.2e-12 45.0 0.2 2.3 2 0 0 2 2 2 2 Cysteine-rich domain E6 PF00518.17 gi|282165312|ref|YP_003357697.1| - 0.0017 18.8 0.4 0.37 11.3 0.0 2.3 2 0 0 2 2 2 2 Early Protein (E6) Hydrolase_3 PF08282.12 gi|282165312|ref|YP_003357697.1| - 0.14 11.9 0.0 0.32 10.7 0.0 1.6 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase AroM PF07302.11 gi|282165312|ref|YP_003357697.1| - 0.14 11.5 0.0 0.7 9.2 0.0 2.0 2 0 0 2 2 2 0 AroM protein Fer4_6 PF12837.7 gi|282165314|ref|YP_003357699.1| - 4.9e-17 61.2 33.8 8.7e-06 25.6 1.2 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_11 PF13247.6 gi|282165314|ref|YP_003357699.1| - 6.8e-17 61.4 19.2 1e-16 60.9 13.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282165314|ref|YP_003357699.1| - 3.4e-11 43.6 32.0 7.4e-06 26.5 13.5 3.6 2 1 3 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282165314|ref|YP_003357699.1| - 9.1e-11 41.8 33.0 1.5e-07 31.5 10.8 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282165314|ref|YP_003357699.1| - 1e-10 41.5 32.7 3.1e-05 24.0 11.9 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282165314|ref|YP_003357699.1| - 1.2e-10 40.7 39.6 2.7e-06 27.0 3.9 5.5 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282165314|ref|YP_003357699.1| - 2.3e-09 36.8 31.4 8.4e-05 22.4 1.4 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|282165314|ref|YP_003357699.1| - 3.7e-08 33.2 30.1 0.00092 19.5 1.5 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|282165314|ref|YP_003357699.1| - 2.4e-07 31.2 41.4 0.015 16.2 3.1 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282165314|ref|YP_003357699.1| - 1.3e-05 25.2 27.8 0.0002 21.4 10.8 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282165314|ref|YP_003357699.1| - 4e-05 24.5 34.2 0.044 14.7 3.3 4.4 2 1 3 5 5 5 4 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|282165314|ref|YP_003357699.1| - 0.00036 21.2 20.4 0.0071 17.1 4.5 4.0 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|282165314|ref|YP_003357699.1| - 0.00055 20.4 29.1 0.79 10.3 3.4 4.1 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282165314|ref|YP_003357699.1| - 0.015 15.8 2.8 0.015 15.8 2.8 3.6 3 2 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|282165314|ref|YP_003357699.1| - 0.33 11.4 34.1 0.24 11.9 2.3 4.1 2 1 2 4 4 4 0 4Fe-4S dicluster domain AP_endonuc_2 PF01261.24 gi|282165315|ref|YP_003357700.1| - 4e-23 82.0 0.0 8e-23 81.0 0.0 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel MFS_1 PF07690.16 gi|282165316|ref|YP_003357701.1| - 6.3e-38 130.6 72.6 3.3e-27 95.4 42.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|282165316|ref|YP_003357701.1| - 6.7e-11 41.4 43.8 8.1e-09 34.5 29.3 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|282165316|ref|YP_003357701.1| - 0.0002 20.3 39.8 0.045 12.6 13.9 3.1 1 1 2 3 3 3 2 MFS_1 like family MFS_3 PF05977.13 gi|282165316|ref|YP_003357701.1| - 0.78 8.1 26.4 0.046 12.1 0.3 2.1 1 1 1 2 2 2 0 Transmembrane secretion effector MFS_1 PF07690.16 gi|282165317|ref|YP_003357702.1| - 7.4e-32 110.6 46.8 9.5e-27 93.8 37.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|282165317|ref|YP_003357702.1| - 7.6e-09 34.5 19.5 7.7e-09 34.5 15.1 2.0 1 1 1 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.7 gi|282165317|ref|YP_003357702.1| - 9.8e-05 21.4 25.0 0.0089 14.9 11.5 2.4 1 1 1 2 2 2 2 MFS_1 like family MFS_1 PF07690.16 gi|282165318|ref|YP_003357703.1| - 3.2e-28 98.7 44.4 5.1e-21 75.0 36.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|282165318|ref|YP_003357703.1| - 3.5e-09 36.0 23.8 2e-05 23.6 10.2 2.2 1 1 0 2 2 2 2 MFS_1 like family MFS_2 PF13347.6 gi|282165318|ref|YP_003357703.1| - 3.5e-08 32.4 33.4 0.0004 19.1 21.9 2.5 1 1 1 2 2 2 2 MFS/sugar transport protein UNC-93 PF05978.16 gi|282165318|ref|YP_003357703.1| - 0.0028 17.4 1.1 0.0028 17.4 1.1 2.6 3 1 0 3 3 3 1 Ion channel regulatory protein UNC-93 BCLP PF12304.8 gi|282165318|ref|YP_003357703.1| - 8.3 5.9 8.8 0.5 9.9 1.1 2.5 2 1 1 3 3 3 0 Beta-casein like protein DUF1328 PF07043.13 gi|282165319|ref|YP_003357704.1| - 1.3e-13 50.9 13.9 2.1e-13 50.3 13.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) SecG PF03840.14 gi|282165319|ref|YP_003357704.1| - 0.52 10.4 13.8 0.53 10.4 3.1 2.1 1 1 1 2 2 2 0 Preprotein translocase SecG subunit DUF3180 PF11377.8 gi|282165319|ref|YP_003357704.1| - 0.71 10.0 9.1 0.87 9.7 9.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3180) COX2-transmemb PF09125.10 gi|282165319|ref|YP_003357704.1| - 2.2 8.1 10.4 0.28 11.0 1.9 2.2 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane ABC2_membrane_2 PF12679.7 gi|282165319|ref|YP_003357704.1| - 2.5 7.3 10.6 2.6 7.2 10.6 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3810 PF12725.7 gi|282165319|ref|YP_003357704.1| - 5.2 6.3 6.7 5.6 6.2 6.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) ATP-synt_8 PF00895.20 gi|282165319|ref|YP_003357704.1| - 7.4 7.1 6.6 1.6 9.3 1.1 2.0 2 0 0 2 2 2 0 ATP synthase protein 8 Na_H_Exchanger PF00999.21 gi|282165320|ref|YP_003357705.1| - 2.2e-43 148.5 50.9 2.7e-43 148.2 50.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family AveC_like PF17198.4 gi|282165320|ref|YP_003357705.1| - 1.1 8.7 4.5 0.42 10.0 0.6 2.2 2 0 0 2 2 2 0 Spirocyclase AveC-like Methyltrn_RNA_2 PF04013.12 gi|282165321|ref|YP_003357706.1| - 8e-61 205.2 0.0 8.9e-61 205.0 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SRP54 PF00448.22 gi|282165325|ref|YP_003357710.1| - 5.6e-70 235.0 0.2 9.1e-70 234.3 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|282165325|ref|YP_003357710.1| - 2.1e-28 98.8 1.8 2.1e-28 98.8 1.8 2.7 4 0 0 4 4 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|282165325|ref|YP_003357710.1| - 1.8e-19 69.7 5.7 1.9e-19 69.6 0.8 2.9 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|282165325|ref|YP_003357710.1| - 7.4e-06 26.0 0.0 3.3e-05 23.9 0.0 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|282165325|ref|YP_003357710.1| - 0.00028 20.5 0.3 0.0018 17.9 0.2 2.3 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|282165325|ref|YP_003357710.1| - 0.00079 18.8 0.0 0.0017 17.6 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin 6PF2K PF01591.18 gi|282165325|ref|YP_003357710.1| - 0.0011 18.3 0.0 0.0022 17.4 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_22 PF13401.6 gi|282165325|ref|YP_003357710.1| - 0.0013 19.0 0.0 0.0032 17.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|282165325|ref|YP_003357710.1| - 0.002 17.2 0.1 0.012 14.6 0.1 2.1 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|282165325|ref|YP_003357710.1| - 0.01 16.0 0.0 0.02 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|282165325|ref|YP_003357710.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase ATP_bind_1 PF03029.17 gi|282165325|ref|YP_003357710.1| - 0.012 15.5 0.1 0.15 11.8 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MobB PF03205.14 gi|282165325|ref|YP_003357710.1| - 0.018 14.9 0.0 0.041 13.8 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|282165325|ref|YP_003357710.1| - 0.02 15.5 0.0 0.056 14.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|282165325|ref|YP_003357710.1| - 0.041 12.8 0.0 0.041 12.8 0.0 1.6 2 0 0 2 2 1 0 Type IV secretion-system coupling protein DNA-binding domain T3SS_HrpK1 PF16937.5 gi|282165325|ref|YP_003357710.1| - 0.05 13.3 0.1 0.16 11.6 0.0 1.9 2 0 0 2 2 2 0 Type III secretion system translocator protein, HrpF Thymidylate_kin PF02223.17 gi|282165325|ref|YP_003357710.1| - 0.055 13.1 0.1 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 Thymidylate kinase AAA_19 PF13245.6 gi|282165325|ref|YP_003357710.1| - 0.058 13.7 0.1 0.12 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|282165325|ref|YP_003357710.1| - 0.061 13.0 0.0 0.18 11.5 0.0 1.9 2 0 0 2 2 1 0 AAA domain LpxK PF02606.14 gi|282165325|ref|YP_003357710.1| - 0.066 12.3 0.1 0.14 11.2 0.1 1.5 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_16 PF13191.6 gi|282165325|ref|YP_003357710.1| - 0.072 13.5 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain SRPRB PF09439.10 gi|282165325|ref|YP_003357710.1| - 0.078 12.4 2.3 6.1 6.2 0.2 2.9 2 1 1 3 3 3 0 Signal recognition particle receptor beta subunit Ribosomal_S10 PF00338.22 gi|282165325|ref|YP_003357710.1| - 0.079 13.2 0.0 0.21 11.8 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein S10p/S20e Put_Phosphatase PF06888.12 gi|282165325|ref|YP_003357710.1| - 0.08 12.3 0.0 0.65 9.4 0.1 2.1 2 0 0 2 2 2 0 Putative Phosphatase Hamartin PF04388.12 gi|282165326|ref|YP_003357711.1| - 0.038 12.7 2.5 0.044 12.5 2.5 1.1 1 0 0 1 1 1 0 Hamartin protein ThiI PF02568.14 gi|282165327|ref|YP_003357712.1| - 2e-62 210.3 0.0 2.7e-62 209.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|282165327|ref|YP_003357712.1| - 1.2e-18 67.5 0.0 2.8e-18 66.4 0.0 1.5 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|282165327|ref|YP_003357712.1| - 2e-05 24.2 0.0 0.053 13.0 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|282165327|ref|YP_003357712.1| - 0.0008 18.3 0.0 0.0017 17.2 0.0 1.5 1 0 0 1 1 1 1 tRNA methyl transferase Ribosomal_L37ae PF01780.19 gi|282165327|ref|YP_003357712.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF2209 PF09974.9 gi|282165328|ref|YP_003357713.1| - 5.2e-46 155.9 1.7 5.8e-46 155.8 1.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) Microcin PF03526.13 gi|282165328|ref|YP_003357713.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Colicin E1 (microcin) immunity protein GTP-bdg_N PF13167.6 gi|282165329|ref|YP_003357714.1| - 1.7e-26 92.7 0.1 4.6e-26 91.3 0.1 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|282165329|ref|YP_003357714.1| - 3.7e-19 68.9 0.0 1.1e-18 67.4 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|282165329|ref|YP_003357714.1| - 2.1e-16 60.3 5.8 4e-16 59.4 5.8 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region RsgA_GTPase PF03193.16 gi|282165329|ref|YP_003357714.1| - 2.6e-10 40.5 0.2 0.00019 21.4 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|282165329|ref|YP_003357714.1| - 4.5e-08 33.1 0.0 9.3e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|282165329|ref|YP_003357714.1| - 5.4e-08 32.5 0.1 1.2e-07 31.3 0.1 1.7 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|282165329|ref|YP_003357714.1| - 1e-05 25.2 0.1 0.0037 16.8 0.0 2.5 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|282165329|ref|YP_003357714.1| - 1.7e-05 24.9 0.1 6.7e-05 23.0 0.1 1.9 1 1 1 2 2 2 1 Dynamin family Septin PF00735.18 gi|282165329|ref|YP_003357714.1| - 0.00048 19.5 0.3 0.4 9.9 0.1 2.3 2 0 0 2 2 2 2 Septin MnmE_helical PF12631.7 gi|282165329|ref|YP_003357714.1| - 0.0014 18.9 0.0 0.0022 18.2 0.0 1.3 1 0 0 1 1 1 1 MnmE helical domain Arf PF00025.21 gi|282165329|ref|YP_003357714.1| - 0.0014 18.1 0.1 0.0041 16.6 0.1 1.8 1 1 0 1 1 1 1 ADP-ribosylation factor family cobW PF02492.19 gi|282165329|ref|YP_003357714.1| - 0.0018 17.9 1.3 0.11 12.0 0.1 2.5 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|282165329|ref|YP_003357714.1| - 0.011 16.3 0.0 0.024 15.2 0.0 1.7 1 0 0 1 1 1 0 ABC transporter PduV-EutP PF10662.9 gi|282165329|ref|YP_003357714.1| - 0.018 14.8 0.1 0.42 10.4 0.1 2.6 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NOG1 PF06858.14 gi|282165329|ref|YP_003357714.1| - 0.032 14.0 0.1 0.16 11.8 0.0 2.2 2 0 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) AAA_33 PF13671.6 gi|282165329|ref|YP_003357714.1| - 0.058 13.5 0.1 0.4 10.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|282165329|ref|YP_003357714.1| - 0.14 12.0 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ApbA_C PF08546.11 gi|282165330|ref|YP_003357715.1| - 1.8e-40 138.0 0.1 2.5e-40 137.6 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|282165330|ref|YP_003357715.1| - 1.5e-28 99.3 0.2 2.8e-28 98.5 0.2 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|282165330|ref|YP_003357715.1| - 1.6e-05 25.4 0.4 5.6e-05 23.7 0.4 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|282165330|ref|YP_003357715.1| - 0.00081 19.4 0.5 0.027 14.4 0.2 3.0 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|282165330|ref|YP_003357715.1| - 0.0017 18.0 0.4 0.0056 16.3 0.4 2.0 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|282165330|ref|YP_003357715.1| - 0.012 15.8 0.6 0.02 15.1 0.2 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|282165330|ref|YP_003357715.1| - 0.064 13.1 2.0 0.081 12.8 0.2 2.0 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|282165330|ref|YP_003357715.1| - 0.082 13.0 0.6 0.15 12.1 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|282165330|ref|YP_003357715.1| - 0.35 11.3 1.7 0.79 10.2 0.1 2.3 2 1 0 3 3 3 0 Putative NAD(P)-binding CBFD_NFYB_HMF PF00808.23 gi|282165331|ref|YP_003357716.1| - 7.6e-19 67.8 0.4 9.3e-19 67.5 0.4 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|282165331|ref|YP_003357716.1| - 4.9e-09 36.6 0.1 5.5e-09 36.5 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|282165331|ref|YP_003357716.1| - 7.7e-08 32.4 0.1 8.1e-08 32.4 0.1 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold Bromo_TP PF07524.13 gi|282165331|ref|YP_003357716.1| - 0.00017 21.5 0.0 0.0002 21.3 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-S PF15630.6 gi|282165331|ref|YP_003357716.1| - 0.00017 21.9 0.1 0.00024 21.4 0.1 1.4 1 1 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 gi|282165331|ref|YP_003357716.1| - 0.00067 19.7 0.0 0.00074 19.6 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.13 gi|282165331|ref|YP_003357716.1| - 0.00092 19.7 0.2 0.0011 19.5 0.2 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TAF PF02969.17 gi|282165331|ref|YP_003357716.1| - 0.011 15.9 0.6 0.013 15.7 0.6 1.1 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) Con-6 PF10346.9 gi|282165331|ref|YP_003357716.1| - 0.093 12.8 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Conidiation protein 6 TPR_2 PF07719.17 gi|282165332|ref|YP_003357717.1| - 2.6e-17 61.5 2.1 0.00094 19.1 0.1 4.4 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282165332|ref|YP_003357717.1| - 2e-15 55.8 9.5 0.00041 20.1 0.2 4.5 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282165332|ref|YP_003357717.1| - 2.9e-10 39.5 3.7 0.0019 18.3 0.1 4.6 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282165332|ref|YP_003357717.1| - 4.3e-09 36.5 1.2 2.7e-05 24.4 0.3 2.9 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282165332|ref|YP_003357717.1| - 2.5e-08 34.4 0.0 0.0034 18.0 0.0 3.2 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|282165332|ref|YP_003357717.1| - 2.5e-07 30.6 0.5 0.033 14.6 0.0 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282165332|ref|YP_003357717.1| - 1.4e-06 28.7 0.1 0.036 14.6 0.0 2.6 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282165332|ref|YP_003357717.1| - 7.8e-06 25.9 0.0 0.18 12.0 0.0 2.4 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282165332|ref|YP_003357717.1| - 2.4e-05 24.1 0.5 0.27 11.1 0.1 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|282165332|ref|YP_003357717.1| - 3.1e-05 23.1 0.1 3.1e-05 23.1 0.1 2.4 2 1 1 3 3 3 1 NMDA receptor-regulated protein 1 TPR_14 PF13428.6 gi|282165332|ref|YP_003357717.1| - 4e-05 24.1 0.4 30 5.8 0.0 4.7 1 1 3 4 4 4 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|282165332|ref|YP_003357717.1| - 0.00016 21.3 4.8 0.79 9.5 0.3 4.6 3 1 2 5 5 5 2 TPR repeat TPR_6 PF13174.6 gi|282165332|ref|YP_003357717.1| - 0.00032 21.1 0.7 21 6.1 0.0 3.9 4 0 0 4 4 3 0 Tetratricopeptide repeat DUF3856 PF12968.7 gi|282165332|ref|YP_003357717.1| - 0.0031 17.6 0.1 2.2 8.3 0.0 3.2 2 2 1 3 3 3 1 Domain of Unknown Function (DUF3856) PSDC PF12588.8 gi|282165332|ref|YP_003357717.1| - 0.0054 16.7 0.0 0.0099 15.9 0.0 1.4 1 0 0 1 1 1 1 Phophatidylserine decarboxylase HrpB1_HrpK PF09613.10 gi|282165332|ref|YP_003357717.1| - 0.0071 16.0 0.0 0.025 14.2 0.0 1.9 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB1_HrpK) TPR_7 PF13176.6 gi|282165332|ref|YP_003357717.1| - 0.016 15.2 0.3 51 4.2 0.0 3.7 4 0 0 4 4 4 0 Tetratricopeptide repeat Peptidase_M4 PF01447.18 gi|282165332|ref|YP_003357717.1| - 0.029 14.8 0.0 1.7 9.1 0.0 2.2 2 0 0 2 2 2 0 Thermolysin metallopeptidase, catalytic domain PPR PF01535.20 gi|282165332|ref|YP_003357717.1| - 0.11 12.8 0.2 19 5.8 0.1 3.3 3 0 0 3 3 3 0 PPR repeat AA_kinase PF00696.28 gi|282165334|ref|YP_003357719.1| - 2e-25 89.8 0.3 1.1e-23 84.1 0.3 2.0 1 1 0 1 1 1 1 Amino acid kinase family PBP_like_2 PF12849.7 gi|282165335|ref|YP_003357720.1| - 7.9e-25 88.1 3.2 1e-24 87.7 3.2 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|282165335|ref|YP_003357720.1| - 5.3e-11 42.7 0.1 1.6e-10 41.1 0.1 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|282165335|ref|YP_003357720.1| - 0.019 14.3 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain PBP_like PF12727.7 gi|282165335|ref|YP_003357720.1| - 0.076 12.1 0.1 0.16 11.1 0.0 1.5 1 1 0 1 1 1 0 PBP superfamily domain Pterin_4a PF01329.19 gi|282165336|ref|YP_003357721.1| - 1.3e-22 79.8 0.0 1.5e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase TatD_DNase PF01026.21 gi|282165337|ref|YP_003357722.1| - 1.5e-13 50.7 0.0 1.9e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 TatD related DNase Tox-HNH-EHHH PF15657.6 gi|282165337|ref|YP_003357722.1| - 0.016 15.6 0.1 7.5 7.0 0.0 2.7 3 0 0 3 3 3 0 HNH/Endo VII superfamily nuclease toxins Na_H_Exchanger PF00999.21 gi|282165338|ref|YP_003357723.1| - 1.2e-66 225.1 58.7 1.7e-66 224.6 58.7 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|282165338|ref|YP_003357723.1| - 3.1e-21 75.8 0.3 5.5e-21 75.0 0.3 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|282165338|ref|YP_003357723.1| - 3.3e-14 52.4 0.0 1.5e-13 50.3 0.0 2.2 2 0 0 2 2 2 1 TrkA-C domain CTP-dep_RFKase PF01982.16 gi|282165339|ref|YP_003357724.1| - 3.5e-42 143.3 0.0 5e-42 142.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_Crp_2 PF13545.6 gi|282165339|ref|YP_003357724.1| - 0.00011 22.1 0.3 0.00019 21.3 0.3 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|282165339|ref|YP_003357724.1| - 0.0003 20.7 0.1 0.0005 19.9 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|282165339|ref|YP_003357724.1| - 0.00068 19.5 0.2 0.0013 18.6 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|282165339|ref|YP_003357724.1| - 0.0018 17.8 0.1 0.0032 17.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|282165339|ref|YP_003357724.1| - 0.0055 16.5 0.1 0.0096 15.7 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|282165339|ref|YP_003357724.1| - 0.012 15.4 0.0 0.029 14.1 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.7 gi|282165339|ref|YP_003357724.1| - 0.047 13.8 0.1 0.077 13.1 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|282165339|ref|YP_003357724.1| - 0.065 13.4 0.0 0.39 10.9 0.1 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|282165339|ref|YP_003357724.1| - 0.072 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MazE_antitoxin PF04014.18 gi|282165339|ref|YP_003357724.1| - 0.086 12.8 0.1 0.27 11.2 0.1 1.9 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin HTH_IclR PF09339.10 gi|282165339|ref|YP_003357724.1| - 0.14 11.9 0.4 0.26 11.1 0.4 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DHBP_synthase PF00926.19 gi|282165340|ref|YP_003357725.1| - 1e-57 194.8 0.0 1.2e-57 194.6 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase PEP-utilizers PF00391.23 gi|282165340|ref|YP_003357725.1| - 0.0023 17.6 0.2 0.27 11.0 0.0 2.9 2 1 0 2 2 2 2 PEP-utilising enzyme, mobile domain Ribosomal_S27 PF01599.19 gi|282165341|ref|YP_003357726.1| - 3.5e-18 65.5 3.2 4.5e-18 65.1 3.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.19 gi|282165341|ref|YP_003357726.1| - 0.003 17.7 2.5 0.0041 17.2 2.3 1.4 1 1 0 1 1 1 1 Ribosomal protein L37e Nudix_N_2 PF14803.6 gi|282165341|ref|YP_003357726.1| - 0.0046 16.9 1.5 0.019 14.9 1.5 1.9 1 1 0 1 1 1 1 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|282165341|ref|YP_003357726.1| - 0.013 15.4 0.5 0.018 15.0 0.5 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|282165341|ref|YP_003357726.1| - 0.074 13.0 0.9 0.1 12.6 0.9 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf_C2H2_10 PF18414.1 gi|282165341|ref|YP_003357726.1| - 0.1 12.1 0.8 12 5.5 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF1451 PF07295.11 gi|282165341|ref|YP_003357726.1| - 0.12 12.3 0.7 0.14 12.2 0.7 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF4186 PF13811.6 gi|282165341|ref|YP_003357726.1| - 0.13 12.3 0.0 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4186) Ribosomal_S24e PF01282.19 gi|282165342|ref|YP_003357727.1| - 8.3e-26 89.7 2.4 1.1e-25 89.4 2.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF5314 PF17241.2 gi|282165342|ref|YP_003357727.1| - 0.038 13.7 0.1 0.047 13.4 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5314) DUF359 PF04019.12 gi|282165343|ref|YP_003357728.1| - 4.4e-42 142.7 0.1 5.5e-42 142.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF4911 PF16256.5 gi|282165343|ref|YP_003357728.1| - 0.082 12.9 0.1 0.24 11.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4911) Spt4 PF06093.13 gi|282165344|ref|YP_003357729.1| - 8.8e-13 48.2 0.0 1.2e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|282165344|ref|YP_003357729.1| - 2.8e-05 23.6 1.0 4.2e-05 23.0 1.0 1.3 1 0 0 1 1 1 1 RecR protein Prok-RING_4 PF14447.6 gi|282165344|ref|YP_003357729.1| - 0.027 14.3 1.5 0.039 13.8 1.5 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 DZR PF12773.7 gi|282165344|ref|YP_003357729.1| - 0.034 14.2 0.8 0.045 13.8 0.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon Flavoprotein PF02441.19 gi|282165345|ref|YP_003357730.1| - 1.1e-38 132.4 0.7 1.9e-38 131.7 0.7 1.4 1 0 0 1 1 1 1 Flavoprotein DFP PF04127.15 gi|282165345|ref|YP_003357730.1| - 2.5e-38 131.8 0.2 5.8e-37 127.3 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein NAD_binding_2 PF03446.15 gi|282165345|ref|YP_003357730.1| - 0.05 13.8 0.0 0.22 11.7 0.0 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase GHMP_kinases_N PF00288.26 gi|282165346|ref|YP_003357731.1| - 6.5e-09 35.9 2.3 1.2e-08 35.1 2.3 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|282165346|ref|YP_003357731.1| - 0.045 14.1 0.3 0.36 11.2 0.0 2.2 2 0 0 2 2 2 0 GHMP kinases C terminal E1-E2_ATPase PF00122.20 gi|282165347|ref|YP_003357732.1| - 2.3e-52 177.2 5.8 2.3e-52 177.2 5.8 3.7 5 0 0 5 5 5 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|282165347|ref|YP_003357732.1| - 1e-44 152.4 5.7 1e-44 152.4 5.7 1.8 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|282165347|ref|YP_003357732.1| - 6e-19 69.2 3.3 6.8e-18 65.7 1.5 3.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|282165347|ref|YP_003357732.1| - 2.5e-18 65.5 0.0 6.5e-18 64.2 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|282165347|ref|YP_003357732.1| - 4.6e-15 55.5 0.0 8.6e-15 54.6 0.0 1.4 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|282165347|ref|YP_003357732.1| - 4.5e-09 36.4 0.4 3e-05 23.9 0.3 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|282165347|ref|YP_003357732.1| - 2.1e-05 25.0 0.0 4.9e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase SBP_bac_3 PF00497.20 gi|282165347|ref|YP_003357732.1| - 0.11 12.0 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 DUF4349 PF14257.6 gi|282165348|ref|YP_003357733.1| - 2.9e-63 213.1 1.0 3.7e-63 212.8 1.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) DUF3568 PF12092.8 gi|282165348|ref|YP_003357733.1| - 0.0093 16.0 2.0 0.019 15.0 1.1 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3568) T2SSM_b PF10741.9 gi|282165348|ref|YP_003357733.1| - 0.13 12.1 0.1 0.48 10.2 0.1 2.0 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein M subtype b tRNA-synt_1d PF00750.19 gi|282165349|ref|YP_003357734.1| - 3.3e-42 144.7 0.0 4.4e-42 144.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|282165349|ref|YP_003357734.1| - 4.1e-32 110.9 0.4 4.1e-32 110.9 0.4 2.2 3 0 0 3 3 3 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|282165349|ref|YP_003357734.1| - 7.8e-12 45.6 0.1 6.5e-11 42.7 0.0 2.5 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|282165349|ref|YP_003357734.1| - 8.4e-05 21.6 0.1 0.21 10.5 0.0 3.1 3 1 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|282165349|ref|YP_003357734.1| - 0.025 13.9 0.1 0.054 12.8 0.1 1.6 1 1 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|282165349|ref|YP_003357734.1| - 0.086 11.6 0.0 18 3.9 0.0 3.0 3 0 0 3 3 3 0 tRNA synthetases class I (M) eRF1_2 PF03464.15 gi|282165350|ref|YP_003357735.1| - 7.4e-37 126.6 0.0 1.2e-36 125.9 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|282165350|ref|YP_003357735.1| - 9e-33 113.1 0.4 1.9e-32 112.1 0.4 1.6 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|282165350|ref|YP_003357735.1| - 1.4e-13 51.0 0.0 7.1e-13 48.7 0.0 2.2 3 0 0 3 3 3 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|282165350|ref|YP_003357735.1| - 5.2e-11 42.9 0.0 5.8e-10 39.6 0.0 2.2 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|282165350|ref|YP_003357735.1| - 1.2e-06 28.9 0.0 2e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 zf-DNL PF05180.12 gi|282165350|ref|YP_003357735.1| - 0.0066 16.4 0.6 0.014 15.3 0.6 1.5 1 0 0 1 1 1 1 DNL zinc finger DUF4379 PF14311.6 gi|282165350|ref|YP_003357735.1| - 0.014 15.7 0.1 0.027 14.8 0.1 1.5 1 0 0 1 1 1 0 Probable Zinc-ribbon domain HypA PF01155.19 gi|282165350|ref|YP_003357735.1| - 0.016 15.2 0.1 0.033 14.2 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-TFIIB PF13453.6 gi|282165350|ref|YP_003357735.1| - 0.032 13.6 0.4 0.26 10.7 0.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger SR1P PF13790.6 gi|282165350|ref|YP_003357735.1| - 0.043 13.9 0.9 0.83 9.8 1.6 2.3 2 0 0 2 2 2 0 SR1 protein zinc_ribbon_4 PF13717.6 gi|282165350|ref|YP_003357735.1| - 0.14 12.1 1.0 23 5.0 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|282165350|ref|YP_003357735.1| - 0.17 11.6 2.8 3 7.6 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|282165350|ref|YP_003357735.1| - 0.45 10.7 1.8 2.4 8.3 0.7 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-LITAF-like PF10601.9 gi|282165350|ref|YP_003357735.1| - 1.3 9.3 6.9 0.59 10.4 1.2 2.3 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Bac_luciferase PF00296.20 gi|282165351|ref|YP_003357736.1| - 2.9e-57 194.5 0.0 3.5e-57 194.2 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DeoC PF01791.9 gi|282165352|ref|YP_003357737.1| - 8.4e-11 41.9 1.8 1e-10 41.6 1.8 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase His_biosynth PF00977.21 gi|282165352|ref|YP_003357737.1| - 0.00049 19.6 0.2 0.0023 17.4 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|282165352|ref|YP_003357737.1| - 0.00081 18.7 0.7 0.0021 17.3 0.2 1.7 1 1 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|282165352|ref|YP_003357737.1| - 0.018 14.1 0.7 0.043 12.8 0.2 1.3 1 1 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain DUF2802 PF10975.8 gi|282165352|ref|YP_003357737.1| - 0.12 12.5 0.1 1.4 9.1 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2802) Dus PF01207.17 gi|282165352|ref|YP_003357737.1| - 0.15 11.1 0.2 0.8 8.7 0.1 1.9 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) TPR_1 PF00515.28 gi|282165353|ref|YP_003357738.1| - 5e-66 216.0 4.7 5.4e-08 32.3 0.0 10.3 10 1 0 10 10 10 8 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282165353|ref|YP_003357738.1| - 2.8e-59 192.5 10.4 1.2e-06 28.1 0.0 10.1 10 0 0 10 10 10 8 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282165353|ref|YP_003357738.1| - 2.4e-47 155.2 4.7 2.1e-05 24.3 0.0 10.7 10 1 0 10 10 10 8 Tetratricopeptide repeat TPR_11 PF13414.6 gi|282165353|ref|YP_003357738.1| - 3.6e-44 148.2 0.0 8.9e-07 28.5 0.0 9.9 3 2 7 10 10 10 8 TPR repeat TPR_17 PF13431.6 gi|282165353|ref|YP_003357738.1| - 3.2e-43 143.0 2.5 0.00028 21.0 0.0 10.1 10 0 0 10 10 10 8 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282165353|ref|YP_003357738.1| - 4.3e-39 132.9 0.5 3.9e-07 30.6 0.1 6.8 3 3 4 7 7 7 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282165353|ref|YP_003357738.1| - 3.4e-35 117.7 8.8 3.1e-05 24.4 0.1 9.3 3 2 7 10 10 10 8 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282165353|ref|YP_003357738.1| - 7.3e-26 90.1 3.4 0.00011 22.3 0.2 6.6 2 1 7 9 9 8 8 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282165353|ref|YP_003357738.1| - 1e-24 86.6 10.2 9.7e-06 25.8 0.0 7.7 2 2 4 8 8 8 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282165353|ref|YP_003357738.1| - 1.4e-23 83.2 0.5 0.00031 21.2 0.0 5.7 4 1 3 7 7 7 5 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282165353|ref|YP_003357738.1| - 2.7e-17 62.2 1.0 0.31 11.8 0.0 8.3 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282165353|ref|YP_003357738.1| - 5.8e-17 60.4 4.2 1.8 8.7 0.0 9.0 9 1 1 10 10 10 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|282165353|ref|YP_003357738.1| - 5e-12 45.9 2.0 8.4e-05 22.7 0.0 4.6 1 1 5 6 6 6 5 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|282165353|ref|YP_003357738.1| - 5.4e-10 38.8 0.0 0.054 12.4 0.0 4.7 3 1 1 4 4 4 2 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|282165353|ref|YP_003357738.1| - 4.5e-09 35.9 0.1 0.12 11.6 0.0 5.3 1 1 5 6 6 6 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|282165353|ref|YP_003357738.1| - 1.7e-08 34.4 1.8 2.6 8.2 0.0 6.3 7 0 0 7 7 6 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|282165353|ref|YP_003357738.1| - 9.5e-07 28.5 14.7 0.28 11.1 0.0 7.9 9 0 0 9 9 8 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|282165353|ref|YP_003357738.1| - 1.3e-05 25.3 5.2 0.9 9.6 0.1 6.3 1 1 5 7 7 7 1 Domain of Unknown Function (DUF3856) PPR PF01535.20 gi|282165353|ref|YP_003357738.1| - 0.00023 21.2 6.8 9.7 6.7 0.1 6.3 6 0 0 6 6 6 0 PPR repeat BTAD PF03704.17 gi|282165353|ref|YP_003357738.1| - 0.0004 20.9 4.6 0.41 11.1 0.1 4.2 4 2 1 5 5 5 2 Bacterial transcriptional activator domain TPR_4 PF07721.14 gi|282165353|ref|YP_003357738.1| - 0.00052 20.4 2.1 17 6.4 0.0 6.1 7 0 0 7 7 5 0 Tetratricopeptide repeat DUF5113 PF17140.4 gi|282165353|ref|YP_003357738.1| - 0.00076 19.3 0.0 11 5.8 0.0 4.6 4 1 1 5 5 5 0 Domain of unknown function (DUF5113) PPTA PF01239.22 gi|282165353|ref|YP_003357738.1| - 0.006 16.3 0.3 29 4.6 0.0 4.8 5 0 0 5 5 5 0 Protein prenyltransferase alpha subunit repeat FAT PF02259.23 gi|282165353|ref|YP_003357738.1| - 0.0061 15.8 1.2 48 3.0 0.2 5.2 2 2 3 5 5 5 0 FAT domain ChAPs PF09295.10 gi|282165353|ref|YP_003357738.1| - 0.0098 14.9 0.0 1.1 8.2 0.0 2.6 1 1 0 2 2 2 1 ChAPs (Chs5p-Arf1p-binding proteins) NRBF2_MIT PF17169.4 gi|282165353|ref|YP_003357738.1| - 0.013 15.7 0.4 48 4.3 0.0 4.9 6 0 0 6 6 5 0 MIT domain of nuclear receptor-binding factor 2 SRP_TPR_like PF17004.5 gi|282165353|ref|YP_003357738.1| - 0.02 14.9 0.0 4.6 7.3 0.0 3.4 2 2 1 3 3 3 0 Putative TPR-like repeat SHNi-TPR PF10516.9 gi|282165353|ref|YP_003357738.1| - 0.036 13.5 0.2 3.2 7.3 0.2 2.9 3 0 0 3 3 3 0 SHNi-TPR PknG_TPR PF16918.5 gi|282165353|ref|YP_003357738.1| - 0.038 12.7 0.2 0.14 10.9 0.0 1.9 2 1 0 2 2 2 0 Protein kinase G tetratricopeptide repeat TPR_21 PF09976.9 gi|282165353|ref|YP_003357738.1| - 0.039 13.7 0.0 15 5.2 0.0 3.1 3 1 1 4 4 4 0 Tetratricopeptide repeat-like domain TOM20_plant PF06552.12 gi|282165353|ref|YP_003357738.1| - 0.078 12.7 0.3 8.8 6.0 0.0 3.4 3 1 1 4 4 4 0 Plant specific mitochondrial import receptor subunit TOM20 DUF627 PF04781.12 gi|282165353|ref|YP_003357738.1| - 0.18 11.8 0.1 75 3.4 0.0 3.8 4 1 1 5 5 4 0 Protein of unknown function (DUF627) Aminotran_4 PF01063.19 gi|282165354|ref|YP_003357739.1| - 2.8e-55 187.6 0.0 3.3e-55 187.4 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV Med14 PF08638.11 gi|282165354|ref|YP_003357739.1| - 0.17 11.3 0.0 0.35 10.3 0.0 1.5 1 0 0 1 1 1 0 Mediator complex subunit MED14 Proton_antipo_M PF00361.20 gi|282165355|ref|YP_003357740.1| - 8e-52 176.3 26.5 8e-52 176.3 26.5 1.9 2 1 0 2 2 2 1 Proton-conducting membrane transporter HycI PF01750.18 gi|282165356|ref|YP_003357741.1| - 9.4e-11 41.6 0.0 3.1e-10 40.0 0.1 1.6 1 1 1 2 2 2 1 Hydrogenase maturation protease B12-binding PF02310.19 gi|282165356|ref|YP_003357741.1| - 0.0019 18.2 0.3 0.39 10.7 0.0 2.8 1 1 2 3 3 3 2 B12 binding domain F420_oxidored PF03807.17 gi|282165356|ref|YP_003357741.1| - 0.085 13.5 0.2 0.14 12.7 0.0 1.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Acylphosphatase PF00708.18 gi|282165357|ref|YP_003357742.1| - 8.8e-25 86.9 0.4 9.6e-25 86.8 0.4 1.0 1 0 0 1 1 1 1 Acylphosphatase BLUF PF04940.12 gi|282165357|ref|YP_003357742.1| - 0.011 15.8 0.0 0.012 15.8 0.0 1.1 1 0 0 1 1 1 0 Sensors of blue-light using FAD Gp_dh_C PF02800.20 gi|282165358|ref|YP_003357743.1| - 7.2e-23 80.9 0.0 1e-22 80.4 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|282165358|ref|YP_003357743.1| - 8.7e-08 32.3 0.2 8.2e-07 29.2 0.0 2.5 2 1 1 3 3 3 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|282165358|ref|YP_003357743.1| - 2.7e-06 27.7 0.0 8.8e-06 26.0 0.0 2.0 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|282165358|ref|YP_003357743.1| - 0.001 19.4 0.0 0.0033 17.7 0.0 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|282165358|ref|YP_003357743.1| - 0.002 18.8 0.1 0.0064 17.1 0.0 1.9 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|282165358|ref|YP_003357743.1| - 0.019 14.3 0.1 3.9 6.8 0.1 2.3 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|282165358|ref|YP_003357743.1| - 0.043 14.4 0.1 0.63 10.7 0.1 2.4 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|282165358|ref|YP_003357743.1| - 0.055 13.7 0.0 0.15 12.3 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 gi|282165358|ref|YP_003357743.1| - 0.11 12.4 1.2 0.45 10.4 0.0 2.4 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2085 PF09858.9 gi|282165360|ref|YP_003357745.1| - 1.1e-30 106.0 0.2 1.1e-30 106.0 0.2 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2085) DUF2085 PF09858.9 gi|282165361|ref|YP_003357746.1| - 1.1e-31 109.2 2.3 1.1e-31 109.2 2.3 2.0 2 0 0 2 2 2 1 Predicted membrane protein (DUF2085) Phage_holin_5_2 PF16079.5 gi|282165361|ref|YP_003357746.1| - 0.071 13.5 0.6 0.18 12.1 0.1 1.9 2 1 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V AI-2E_transport PF01594.16 gi|282165362|ref|YP_003357747.1| - 1.2e-27 96.9 46.5 1.7e-27 96.5 46.5 1.2 1 0 0 1 1 1 1 AI-2E family transporter DUF2628 PF10947.8 gi|282165362|ref|YP_003357747.1| - 0.1 12.9 0.4 0.1 12.9 0.4 4.0 4 2 0 4 4 4 0 Protein of unknown function (DUF2628) Peptidase_M32 PF02074.15 gi|282165363|ref|YP_003357748.1| - 2.3e-176 587.3 0.0 2.7e-176 587.1 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF89 PF01937.19 gi|282165364|ref|YP_003357749.1| - 3.5e-51 174.2 0.0 4e-51 174.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Polysacc_deac_1 PF01522.21 gi|282165364|ref|YP_003357749.1| - 0.092 12.6 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Polysaccharide deacetylase Glycos_transf_1 PF00534.20 gi|282165365|ref|YP_003357750.1| - 8.8e-27 93.7 0.0 1.3e-26 93.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282165365|ref|YP_003357750.1| - 1.5e-22 80.5 0.0 2.3e-22 79.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282165365|ref|YP_003357750.1| - 1.7e-22 80.2 0.2 2.5e-22 79.7 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|282165365|ref|YP_003357750.1| - 1.9e-17 64.2 0.0 2.9e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|282165365|ref|YP_003357750.1| - 3.1e-16 59.8 0.1 3.9e-08 33.3 0.0 2.2 2 0 0 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|282165365|ref|YP_003357750.1| - 5.4e-08 33.0 0.0 1.1e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Peptidase_M29 PF02073.15 gi|282165366|ref|YP_003357751.1| - 7.1e-25 87.6 0.0 2e-24 86.1 0.0 1.6 1 1 0 1 1 1 1 Thermophilic metalloprotease (M29) AAA_2 PF07724.14 gi|282165367|ref|YP_003357752.1| - 6.6e-43 146.8 0.0 4.4e-40 137.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA PF00004.29 gi|282165367|ref|YP_003357752.1| - 1.2e-19 71.0 0.0 4.6e-11 43.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_9 PF17871.1 gi|282165367|ref|YP_003357752.1| - 1.6e-19 69.7 0.0 4.2e-19 68.4 0.0 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|282165367|ref|YP_003357752.1| - 4.2e-18 65.7 0.0 6.2e-11 42.5 0.0 3.4 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) ClpB_D2-small PF10431.9 gi|282165367|ref|YP_003357752.1| - 4.3e-17 61.9 0.7 1.4e-16 60.3 0.2 2.1 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein AAA_16 PF13191.6 gi|282165367|ref|YP_003357752.1| - 3.8e-10 40.4 6.0 8.5e-05 23.0 0.2 5.1 2 2 2 4 4 4 2 AAA ATPase domain AAA_22 PF13401.6 gi|282165367|ref|YP_003357752.1| - 1.6e-07 31.7 0.7 0.044 14.1 0.1 4.1 4 1 0 4 4 3 2 AAA domain Sigma54_activat PF00158.26 gi|282165367|ref|YP_003357752.1| - 2.3e-06 27.4 0.1 0.013 15.2 0.0 2.5 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_14 PF13173.6 gi|282165367|ref|YP_003357752.1| - 1.8e-05 24.8 0.0 1.4 8.9 0.0 3.4 3 0 0 3 3 3 2 AAA domain TniB PF05621.11 gi|282165367|ref|YP_003357752.1| - 5.9e-05 22.6 0.0 0.058 12.8 0.0 2.9 2 1 0 2 2 2 1 Bacterial TniB protein RuvB_N PF05496.12 gi|282165367|ref|YP_003357752.1| - 6.6e-05 22.7 0.8 0.025 14.3 0.0 3.2 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|282165367|ref|YP_003357752.1| - 0.00019 22.0 0.2 0.16 12.6 0.0 2.9 3 0 0 3 3 2 1 AAA domain NACHT PF05729.12 gi|282165367|ref|YP_003357752.1| - 0.00026 21.0 0.1 0.0057 16.6 0.0 2.6 3 0 0 3 3 2 1 NACHT domain IstB_IS21 PF01695.17 gi|282165367|ref|YP_003357752.1| - 0.00027 20.7 0.1 0.045 13.5 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|282165367|ref|YP_003357752.1| - 0.00029 20.4 0.0 0.72 9.3 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|282165367|ref|YP_003357752.1| - 0.0016 17.8 0.6 14 5.0 0.0 3.7 4 0 0 4 4 4 0 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|282165367|ref|YP_003357752.1| - 0.002 18.1 0.2 2.4 8.2 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ResIII PF04851.15 gi|282165367|ref|YP_003357752.1| - 0.0029 17.6 0.1 0.67 9.9 0.0 3.1 2 1 0 3 3 3 1 Type III restriction enzyme, res subunit RNA_helicase PF00910.22 gi|282165367|ref|YP_003357752.1| - 0.0039 17.6 0.0 4.4 7.7 0.0 2.6 2 0 0 2 2 2 0 RNA helicase ATPase_2 PF01637.18 gi|282165367|ref|YP_003357752.1| - 0.0043 17.0 0.0 0.2 11.5 0.0 2.7 2 1 0 3 3 3 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|282165367|ref|YP_003357752.1| - 0.006 16.3 0.1 1 9.0 0.1 2.6 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|282165367|ref|YP_003357752.1| - 0.0066 16.7 0.3 6.3 7.0 0.0 3.4 3 1 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|282165367|ref|YP_003357752.1| - 0.014 15.0 0.5 0.21 11.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain Clp_N PF02861.20 gi|282165367|ref|YP_003357752.1| - 0.014 15.5 0.1 5.6 7.2 0.0 2.9 2 0 0 2 2 2 0 Clp amino terminal domain, pathogenicity island component AAA_29 PF13555.6 gi|282165367|ref|YP_003357752.1| - 0.016 15.0 0.0 5.2 6.9 0.0 2.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|282165367|ref|YP_003357752.1| - 0.022 14.4 0.3 2.9 7.5 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|282165367|ref|YP_003357752.1| - 0.024 15.0 0.1 1 9.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|282165367|ref|YP_003357752.1| - 0.025 14.5 0.0 1.3 8.9 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase AAA_23 PF13476.6 gi|282165367|ref|YP_003357752.1| - 0.029 14.9 0.0 2.4 8.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|282165367|ref|YP_003357752.1| - 0.032 13.5 0.0 0.87 8.8 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin APS_kinase PF01583.20 gi|282165367|ref|YP_003357752.1| - 0.042 13.8 0.2 15 5.5 0.0 3.4 3 0 0 3 3 3 0 Adenylylsulphate kinase Torsin PF06309.11 gi|282165367|ref|YP_003357752.1| - 0.045 13.9 0.0 0.19 11.9 0.0 2.0 3 0 0 3 3 1 0 Torsin AAA_33 PF13671.6 gi|282165367|ref|YP_003357752.1| - 0.069 13.3 0.0 4.8 7.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.11 gi|282165367|ref|YP_003357752.1| - 0.07 13.0 0.0 6.6 6.6 0.0 3.0 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 gi|282165367|ref|YP_003357752.1| - 0.079 13.0 0.1 13 5.8 0.0 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain DUF815 PF05673.13 gi|282165367|ref|YP_003357752.1| - 0.12 11.5 0.1 0.27 10.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_24 PF13479.6 gi|282165367|ref|YP_003357752.1| - 0.15 11.7 0.0 20 4.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|282165367|ref|YP_003357752.1| - 0.16 12.5 0.0 18 5.8 0.0 2.5 2 0 0 2 2 2 0 ABC transporter AAA_6 PF12774.7 gi|282165367|ref|YP_003357752.1| - 0.17 10.8 0.0 2.8 6.8 0.0 2.1 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region AAA_21 PF13304.6 gi|282165367|ref|YP_003357752.1| - 0.18 11.6 0.0 35 4.1 0.0 3.0 3 0 0 3 3 3 0 AAA domain, putative AbiEii toxin, Type IV TA system Roc PF08477.13 gi|282165367|ref|YP_003357752.1| - 0.19 12.0 0.0 2 8.6 0.0 2.5 3 0 0 3 3 2 0 Ras of Complex, Roc, domain of DAPkinase Rad17 PF03215.15 gi|282165367|ref|YP_003357752.1| - 0.23 11.4 0.0 5.6 6.8 0.0 2.4 2 0 0 2 2 2 0 Rad17 P-loop domain NTPase_1 PF03266.15 gi|282165367|ref|YP_003357752.1| - 0.29 11.0 1.7 21 5.0 0.0 3.3 4 0 0 4 4 4 0 NTPase TPR_11 PF13414.6 gi|282165368|ref|YP_003357753.1| - 1e-48 162.8 13.0 1.6e-09 37.3 0.4 8.5 2 2 7 9 9 9 7 TPR repeat TPR_2 PF07719.17 gi|282165368|ref|YP_003357753.1| - 7.6e-41 135.0 12.0 1.9e-05 24.4 0.0 7.7 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282165368|ref|YP_003357753.1| - 7.8e-39 130.0 7.4 2.2e-05 24.1 0.1 7.7 7 0 0 7 7 7 6 Tetratricopeptide repeat Pkinase PF00069.25 gi|282165368|ref|YP_003357753.1| - 1.2e-33 116.7 0.0 1.6e-33 116.2 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain TPR_17 PF13431.6 gi|282165368|ref|YP_003357753.1| - 9.9e-30 100.8 8.1 1.4e-06 28.3 0.0 8.1 7 1 0 7 7 7 6 Tetratricopeptide repeat Pkinase_Tyr PF07714.17 gi|282165368|ref|YP_003357753.1| - 1.3e-29 103.3 0.0 1.8e-29 102.9 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase TPR_8 PF13181.6 gi|282165368|ref|YP_003357753.1| - 1.8e-28 96.3 1.3 0.00046 20.2 0.0 7.5 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|282165368|ref|YP_003357753.1| - 4.2e-26 91.3 20.2 1.2e-08 35.5 3.8 5.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282165368|ref|YP_003357753.1| - 6.3e-23 79.5 20.0 0.00018 22.0 0.3 8.2 3 1 5 8 8 7 7 Tetratricopeptide repeat TPR_12 PF13424.6 gi|282165368|ref|YP_003357753.1| - 1.1e-18 67.3 20.0 2.8e-06 27.5 0.8 4.6 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282165368|ref|YP_003357753.1| - 3.6e-15 54.8 6.8 0.0081 16.1 0.0 7.5 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|282165368|ref|YP_003357753.1| - 1.3e-12 48.0 11.6 0.00026 21.4 1.9 4.7 4 1 1 5 5 4 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|282165368|ref|YP_003357753.1| - 6.3e-11 41.8 29.2 0.008 16.0 0.6 7.2 7 0 0 7 7 7 3 Tetratricopeptide repeat BTAD PF03704.17 gi|282165368|ref|YP_003357753.1| - 6.5e-07 29.9 9.3 0.0074 16.7 0.2 4.3 1 1 5 6 6 6 4 Bacterial transcriptional activator domain TPR_6 PF13174.6 gi|282165368|ref|YP_003357753.1| - 2.7e-06 27.7 7.5 0.61 10.9 0.0 6.5 7 0 0 7 7 7 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|282165368|ref|YP_003357753.1| - 7.2e-06 26.2 1.9 1.2 9.6 0.1 4.4 1 1 3 4 4 4 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|282165368|ref|YP_003357753.1| - 3.4e-05 23.2 0.9 0.83 8.8 0.3 3.9 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|282165368|ref|YP_003357753.1| - 6.5e-05 23.0 13.1 0.025 14.7 0.2 4.7 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_5 PF12688.7 gi|282165368|ref|YP_003357753.1| - 0.00088 19.5 6.2 7.8 6.8 0.1 4.5 1 1 2 4 4 4 0 Tetratrico peptide repeat TPR_4 PF07721.14 gi|282165368|ref|YP_003357753.1| - 0.0068 16.9 26.7 2.7 8.9 0.2 8.2 8 2 1 9 9 7 2 Tetratricopeptide repeat MIT PF04212.18 gi|282165368|ref|YP_003357753.1| - 0.018 15.1 5.8 5 7.3 0.1 5.1 5 1 1 6 6 6 0 MIT (microtubule interacting and transport) domain APH PF01636.23 gi|282165368|ref|YP_003357753.1| - 0.039 13.9 0.1 0.63 9.9 0.0 2.5 2 1 0 2 2 2 0 Phosphotransferase enzyme family DUF3856 PF12968.7 gi|282165368|ref|YP_003357753.1| - 0.068 13.2 0.5 84 3.2 0.0 4.4 2 2 2 5 5 5 0 Domain of Unknown Function (DUF3856) TPR_21 PF09976.9 gi|282165368|ref|YP_003357753.1| - 4.3 7.0 5.6 5.8 6.6 0.2 3.2 2 2 1 3 3 3 0 Tetratricopeptide repeat-like domain ALS_ss_C PF10369.9 gi|282165369|ref|YP_003357754.1| - 4e-32 110.2 4.0 1.3e-30 105.4 0.8 2.2 2 0 0 2 2 2 2 Small subunit of acetolactate synthase ACT PF01842.25 gi|282165369|ref|YP_003357754.1| - 8.5e-17 60.6 1.9 1.2e-16 60.2 0.1 2.1 2 1 1 3 3 3 1 ACT domain ACT_5 PF13710.6 gi|282165369|ref|YP_003357754.1| - 1e-16 60.5 0.5 2.4e-16 59.3 0.1 1.8 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|282165369|ref|YP_003357754.1| - 0.00017 22.1 4.0 0.00041 20.9 0.6 2.3 2 0 0 2 2 2 1 ACT domain NIL PF09383.10 gi|282165369|ref|YP_003357754.1| - 0.029 14.2 0.1 8.9 6.2 0.1 2.3 2 0 0 2 2 2 0 NIL domain TPP_enzyme_N PF02776.18 gi|282165370|ref|YP_003357755.1| - 3.8e-59 199.2 0.1 1.5e-58 197.2 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|282165370|ref|YP_003357755.1| - 1.7e-55 186.5 0.1 3.1e-55 185.7 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|282165370|ref|YP_003357755.1| - 1e-53 181.2 0.1 6.1e-53 178.7 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|282165370|ref|YP_003357755.1| - 0.033 13.9 0.2 0.068 12.9 0.2 1.5 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Dala_Dala_lig_C PF07478.13 gi|282165370|ref|YP_003357755.1| - 0.1 12.1 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus HMGL-like PF00682.19 gi|282165371|ref|YP_003357756.1| - 1.8e-74 250.6 1.4 4.3e-74 249.4 0.3 1.9 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|282165371|ref|YP_003357756.1| - 6.5e-36 123.2 0.3 1.2e-35 122.3 0.3 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain CarboxypepD_reg PF13620.6 gi|282165372|ref|YP_003357757.1| - 2.7e-10 40.4 4.4 2.7e-10 40.4 4.4 2.5 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|282165372|ref|YP_003357757.1| - 3.9e-07 30.0 1.2 3.9e-07 30.0 1.2 2.3 2 0 0 2 2 2 1 CarboxypepD_reg-like domain fn3_3 PF14686.6 gi|282165372|ref|YP_003357757.1| - 0.0062 16.3 0.4 0.0062 16.3 0.4 2.9 4 0 0 4 4 4 1 Polysaccharide lyase family 4, domain II Big_1 PF02369.16 gi|282165372|ref|YP_003357757.1| - 0.023 14.7 0.3 0.023 14.7 0.3 3.3 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 1) DUF3869 PF12985.7 gi|282165372|ref|YP_003357757.1| - 0.058 13.8 7.8 0.53 10.7 2.1 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF3869) Dehydratase_LU PF02286.15 gi|282165372|ref|YP_003357757.1| - 0.12 10.9 0.0 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 Dehydratase large subunit FMN_bind PF04205.14 gi|282165372|ref|YP_003357757.1| - 0.32 11.6 4.1 0.37 11.4 0.5 2.6 3 1 0 3 3 3 0 FMN-binding domain Rubrerythrin PF02915.17 gi|282165373|ref|YP_003357758.1| - 4.7e-08 33.5 2.0 6e-08 33.2 2.0 1.2 1 0 0 1 1 1 1 Rubrerythrin Mn_catalase PF05067.12 gi|282165373|ref|YP_003357758.1| - 0.00013 21.0 0.2 0.00015 20.8 0.2 1.0 1 0 0 1 1 1 1 Manganese containing catalase COQ7 PF03232.13 gi|282165373|ref|YP_003357758.1| - 0.0002 21.2 0.2 0.00023 21.0 0.2 1.2 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Ferritin PF00210.24 gi|282165373|ref|YP_003357758.1| - 0.00062 19.7 1.4 0.00091 19.2 0.5 1.7 1 1 1 2 2 2 1 Ferritin-like domain Imm71 PF15602.6 gi|282165373|ref|YP_003357758.1| - 0.0026 17.8 0.3 0.003 17.6 0.3 1.2 1 0 0 1 1 1 1 Immunity protein 71 DUF2383 PF09537.10 gi|282165373|ref|YP_003357758.1| - 0.003 17.9 0.4 0.0045 17.3 0.4 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) IFT81_CH PF18383.1 gi|282165373|ref|YP_003357758.1| - 0.0064 16.8 0.1 0.0077 16.5 0.1 1.1 1 0 0 1 1 1 1 Intraflagellar transport 81 calponin homology domain Ribonuc_red_sm PF00268.21 gi|282165373|ref|YP_003357758.1| - 0.052 13.0 0.1 0.058 12.8 0.1 1.1 1 0 0 1 1 1 0 Ribonucleotide reductase, small chain DUF1657 PF07870.11 gi|282165373|ref|YP_003357758.1| - 0.086 12.7 2.0 0.8 9.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) DUF5617 PF18493.1 gi|282165373|ref|YP_003357758.1| - 0.088 12.9 0.1 0.69 10.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5617) Glycos_transf_2 PF00535.26 gi|282165374|ref|YP_003357759.1| - 1e-18 67.7 0.0 1.4e-18 67.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282165374|ref|YP_003357759.1| - 3.2e-08 33.7 0.0 5.3e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 CofC PF01983.16 gi|282165374|ref|YP_003357759.1| - 0.14 11.3 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like Tweety PF04906.13 gi|282165374|ref|YP_003357759.1| - 0.19 10.3 0.0 0.27 9.8 0.0 1.1 1 0 0 1 1 1 0 Tweety OMP_b-brl_3 PF14905.6 gi|282165374|ref|YP_003357759.1| - 0.2 10.6 0.0 0.25 10.3 0.0 1.1 1 0 0 1 1 1 0 Outer membrane protein beta-barrel family STT3 PF02516.14 gi|282165375|ref|YP_003357760.1| - 4.1e-26 92.0 38.5 2e-24 86.4 38.4 3.0 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|282165375|ref|YP_003357760.1| - 1.5e-25 89.3 4.0 1.2e-24 86.4 3.0 2.7 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain PMT_2 PF13231.6 gi|282165375|ref|YP_003357760.1| - 5.2e-05 23.5 14.8 5.2e-05 23.5 14.8 4.9 4 1 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase EMC3_TMCO1 PF01956.16 gi|282165375|ref|YP_003357760.1| - 0.0066 16.2 0.4 0.025 14.3 0.0 2.1 2 0 0 2 2 2 1 Integral membrane protein EMC3/TMCO1-like 120_Rick_ant PF12574.8 gi|282165375|ref|YP_003357760.1| - 0.025 13.8 0.1 0.047 12.9 0.1 1.4 1 0 0 1 1 1 0 120 KDa Rickettsia surface antigen SH3_19 PF18597.1 gi|282165375|ref|YP_003357760.1| - 0.049 13.5 0.1 0.13 12.1 0.1 1.7 1 0 0 1 1 1 0 Myosin X N-terminal SH3 domain Glycos_transf_1 PF00534.20 gi|282165376|ref|YP_003357761.1| - 1.5e-16 60.4 0.0 2.3e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282165376|ref|YP_003357761.1| - 5.5e-15 56.0 0.0 9e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282165376|ref|YP_003357761.1| - 8e-14 52.0 0.0 1.7e-13 50.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|282165376|ref|YP_003357761.1| - 7.2e-12 46.0 0.0 2.4e-11 44.3 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|282165376|ref|YP_003357761.1| - 0.001 19.1 0.0 0.0018 18.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|282165377|ref|YP_003357762.1| - 6.9e-35 120.5 0.0 1.3e-34 119.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|282165377|ref|YP_003357762.1| - 7.7e-29 100.4 0.0 1.3e-28 99.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|282165377|ref|YP_003357762.1| - 4.1e-24 85.8 0.0 1.1e-23 84.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|282165377|ref|YP_003357762.1| - 1.2e-20 74.3 0.1 4.6e-20 72.4 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|282165377|ref|YP_003357762.1| - 4.7e-07 29.9 0.0 8.9e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|282165377|ref|YP_003357762.1| - 4.5e-05 23.3 0.4 0.054 13.2 0.0 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain MeaB PF03308.16 gi|282165377|ref|YP_003357762.1| - 0.12 11.4 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NAD_binding_3 PF03447.16 gi|282165377|ref|YP_003357762.1| - 0.12 13.1 0.1 0.24 12.1 0.1 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Glycos_transf_1 PF00534.20 gi|282165378|ref|YP_003357763.1| - 7.9e-30 103.6 0.0 1.9e-29 102.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282165378|ref|YP_003357763.1| - 5.4e-25 88.4 0.0 1.4e-24 87.1 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282165378|ref|YP_003357763.1| - 1.3e-16 61.1 0.0 2.2e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|282165378|ref|YP_003357763.1| - 1.5e-13 51.5 0.1 2.7e-13 50.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|282165378|ref|YP_003357763.1| - 1.2e-05 25.6 0.0 2.5e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|282165379|ref|YP_003357764.1| - 5.9e-22 78.3 0.0 9e-22 77.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|282165379|ref|YP_003357764.1| - 2.1e-17 63.8 0.0 2.9e-17 63.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|282165379|ref|YP_003357764.1| - 0.01 16.3 0.0 0.03 14.8 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|282165379|ref|YP_003357764.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.20 gi|282165380|ref|YP_003357765.1| - 4.8e-34 117.4 0.0 7.4e-34 116.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|282165380|ref|YP_003357765.1| - 1.6e-27 96.5 0.0 3.2e-27 95.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|282165380|ref|YP_003357765.1| - 6.7e-10 39.2 0.0 4.7e-09 36.5 0.0 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|282165380|ref|YP_003357765.1| - 1.2e-07 32.3 0.0 8.4e-07 29.6 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|282165380|ref|YP_003357765.1| - 7e-07 29.6 0.0 1.5e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|282165380|ref|YP_003357765.1| - 0.026 13.4 0.0 0.15 10.9 0.0 1.9 1 1 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Polysacc_synt PF01943.17 gi|282165381|ref|YP_003357766.1| - 2.3e-29 102.7 34.0 2.3e-29 102.7 34.0 2.5 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|282165381|ref|YP_003357766.1| - 1.6e-19 70.3 20.8 1.6e-19 70.3 20.8 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|282165381|ref|YP_003357766.1| - 1.6e-17 63.9 25.6 1.6e-17 63.9 25.6 3.9 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|282165381|ref|YP_003357766.1| - 1.6e-07 31.1 12.0 1.6e-07 31.1 12.0 4.1 3 2 0 3 3 3 1 MatE MurJ PF03023.14 gi|282165381|ref|YP_003357766.1| - 2e-07 30.0 44.7 2e-07 30.0 44.7 1.8 1 1 1 2 2 2 1 Lipid II flippase MurJ PMT_2 PF13231.6 gi|282165382|ref|YP_003357767.1| - 3.1e-33 115.2 16.8 3.1e-33 115.2 16.8 2.9 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase YwiC PF14256.6 gi|282165382|ref|YP_003357767.1| - 8.1 6.8 30.4 0.23 11.8 3.0 4.2 1 1 2 3 3 3 0 YwiC-like protein Epimerase PF01370.21 gi|282165384|ref|YP_003357769.1| - 2.1e-57 194.3 0.0 2.9e-57 193.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|282165384|ref|YP_003357769.1| - 4e-28 98.8 0.0 1e-21 77.7 0.0 2.9 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|282165384|ref|YP_003357769.1| - 1.2e-09 37.7 0.0 4.2e-08 32.5 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|282165384|ref|YP_003357769.1| - 8.4e-07 29.1 0.0 2.1e-06 27.8 0.0 1.7 1 1 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|282165384|ref|YP_003357769.1| - 1.6e-05 24.2 0.2 0.053 12.7 0.0 3.0 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|282165384|ref|YP_003357769.1| - 0.001 18.3 0.0 0.0018 17.4 0.0 1.5 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|282165384|ref|YP_003357769.1| - 0.011 14.9 0.1 0.14 11.3 0.1 2.1 2 0 0 2 2 2 0 Male sterility protein KR PF08659.10 gi|282165384|ref|YP_003357769.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 KR domain NmrA PF05368.13 gi|282165384|ref|YP_003357769.1| - 0.12 11.9 0.1 13 5.2 0.0 2.9 3 0 0 3 3 3 0 NmrA-like family GDP_Man_Dehyd PF16363.5 gi|282165385|ref|YP_003357770.1| - 2e-133 444.9 0.0 2.3e-133 444.7 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|282165385|ref|YP_003357770.1| - 1.6e-66 224.2 0.0 1.9e-66 224.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|282165385|ref|YP_003357770.1| - 1.2e-05 24.6 0.0 1.7e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|282165385|ref|YP_003357770.1| - 0.00068 18.9 0.0 0.0015 17.7 0.0 1.5 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein dTDP_sugar_isom PF00908.17 gi|282165386|ref|YP_003357771.1| - 2e-14 53.6 0.0 2.3e-14 53.4 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.11 gi|282165386|ref|YP_003357771.1| - 2.2e-07 30.6 0.0 2.8e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.11 gi|282165386|ref|YP_003357771.1| - 0.00086 19.0 0.0 0.27 11.0 0.0 2.3 2 0 0 2 2 2 2 Cupin domain GDP_Man_Dehyd PF16363.5 gi|282165387|ref|YP_003357772.1| - 4.8e-80 269.4 0.0 5.5e-80 269.2 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|282165387|ref|YP_003357772.1| - 6.9e-64 215.6 0.0 8.2e-64 215.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|282165387|ref|YP_003357772.1| - 1.2e-18 67.1 0.0 1.6e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|282165387|ref|YP_003357772.1| - 4.8e-18 65.3 0.0 5.6e-18 65.0 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|282165387|ref|YP_003357772.1| - 1.9e-15 56.7 0.0 7.2e-15 54.9 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|282165387|ref|YP_003357772.1| - 1.5e-13 50.5 0.1 5.4e-12 45.4 0.1 2.5 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|282165387|ref|YP_003357772.1| - 1.1e-07 31.9 0.0 1.8e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|282165387|ref|YP_003357772.1| - 3.4e-05 23.4 0.1 8.7e-05 22.1 0.1 1.6 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|282165387|ref|YP_003357772.1| - 0.011 15.6 0.0 0.022 14.7 0.0 1.5 1 1 0 1 1 1 0 KR domain Ldh_1_N PF00056.23 gi|282165387|ref|YP_003357772.1| - 0.027 14.6 0.1 0.046 13.8 0.1 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain NTP_transferase PF00483.23 gi|282165388|ref|YP_003357773.1| - 1.3e-57 195.2 0.0 1.6e-57 194.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|282165388|ref|YP_003357773.1| - 2.8e-14 52.2 16.6 3.3e-09 36.1 2.3 4.1 4 1 2 6 6 6 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|282165388|ref|YP_003357773.1| - 4.9e-13 49.7 0.0 7.1e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|282165388|ref|YP_003357773.1| - 4.1e-08 32.8 16.2 1.8e-05 24.3 0.6 5.2 5 0 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase Holin_BlyA PF05102.12 gi|282165388|ref|YP_003357773.1| - 0.11 12.5 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 holin, BlyA family RmlD_sub_bind PF04321.17 gi|282165389|ref|YP_003357774.1| - 3.1e-70 236.5 0.0 3.7e-70 236.3 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|282165389|ref|YP_003357774.1| - 8.6e-24 84.3 0.1 1.1e-23 84.0 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|282165389|ref|YP_003357774.1| - 1e-17 64.6 0.1 2.1e-17 63.5 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|282165389|ref|YP_003357774.1| - 1.4e-11 43.9 0.2 2.8e-11 43.0 0.2 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|282165389|ref|YP_003357774.1| - 1.6e-11 43.9 0.3 4.2e-11 42.5 0.1 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|282165389|ref|YP_003357774.1| - 3.3e-07 29.8 0.2 1.4e-06 27.7 0.2 1.8 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|282165389|ref|YP_003357774.1| - 0.0023 17.8 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|282165390|ref|YP_003357775.1| - 1.3e-56 192.4 0.0 1.7e-56 192.1 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|282165390|ref|YP_003357775.1| - 4.3e-53 180.2 0.0 5.2e-53 180.0 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|282165390|ref|YP_003357775.1| - 3.4e-14 52.5 0.0 7.3e-14 51.4 0.0 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|282165390|ref|YP_003357775.1| - 7.1e-12 45.1 0.0 1.1e-05 24.8 0.0 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|282165390|ref|YP_003357775.1| - 4.7e-10 39.0 0.0 6.6e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|282165390|ref|YP_003357775.1| - 6.2e-07 28.8 0.0 0.0057 15.8 0.0 2.3 1 1 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|282165390|ref|YP_003357775.1| - 6.7e-05 22.4 0.0 0.00023 20.7 0.0 1.9 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|282165390|ref|YP_003357775.1| - 0.0077 16.1 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding SH3_16 PF18348.1 gi|282165390|ref|YP_003357775.1| - 0.039 13.8 0.0 0.091 12.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial dipeptidyl-peptidase Sh3 domain KR PF08659.10 gi|282165390|ref|YP_003357775.1| - 0.045 13.7 0.0 0.084 12.8 0.0 1.5 1 0 0 1 1 1 0 KR domain NTP_transferase PF00483.23 gi|282165391|ref|YP_003357776.1| - 4.4e-35 121.4 0.0 5.3e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|282165391|ref|YP_003357776.1| - 2.3e-11 44.3 0.0 3.1e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|282165391|ref|YP_003357776.1| - 1.7e-05 24.7 0.0 0.00029 20.7 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep PF00132.24 gi|282165391|ref|YP_003357776.1| - 0.0018 17.9 7.8 0.019 14.6 1.6 4.2 1 1 2 3 3 3 2 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 gi|282165391|ref|YP_003357776.1| - 0.009 14.2 0.9 0.013 13.7 0.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|282165391|ref|YP_003357776.1| - 0.018 14.0 0.4 0.025 13.5 0.4 1.2 1 0 0 1 1 1 0 L-fucokinase Hexapep_2 PF14602.6 gi|282165391|ref|YP_003357776.1| - 5.2 6.9 8.8 3.9 7.3 0.3 3.6 1 1 3 4 4 4 0 Hexapeptide repeat of succinyl-transferase PQQ_3 PF13570.6 gi|282165392|ref|YP_003357777.1| - 3.5e-70 230.9 42.5 2.9e-09 37.1 2.0 8.6 9 0 0 9 9 9 8 PQQ-like domain PQQ_2 PF13360.6 gi|282165392|ref|YP_003357777.1| - 3.1e-51 174.3 7.6 2.2e-19 70.0 0.5 4.0 1 1 2 4 4 4 4 PQQ-like domain PQQ PF01011.21 gi|282165392|ref|YP_003357777.1| - 3.9e-49 162.3 26.7 1.1e-08 34.6 0.1 8.9 9 0 0 9 9 9 7 PQQ enzyme repeat Arylsulfotrans PF05935.11 gi|282165392|ref|YP_003357777.1| - 0.013 14.4 0.1 0.19 10.6 0.1 2.4 2 1 0 2 2 2 0 Arylsulfotransferase (ASST) SUKH-4 PF14435.6 gi|282165392|ref|YP_003357777.1| - 0.037 14.1 0.4 1.1 9.3 0.0 3.0 2 2 0 2 2 2 0 SUKH-4 immunity protein Reg_prop PF07494.11 gi|282165392|ref|YP_003357777.1| - 0.12 12.7 4.3 26 5.5 0.0 5.3 7 0 0 7 7 7 0 Two component regulator propeller STT3 PF02516.14 gi|282165393|ref|YP_003357778.1| - 1.9e-26 93.0 26.2 3.4e-26 92.2 26.2 1.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|282165393|ref|YP_003357778.1| - 8.2e-19 67.7 4.9 1.7e-18 66.7 4.9 1.6 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain PMT_2 PF13231.6 gi|282165393|ref|YP_003357778.1| - 8.2e-06 26.1 6.0 8.2e-06 26.1 6.0 3.6 2 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Big_6 PF17936.1 gi|282165393|ref|YP_003357778.1| - 0.00093 19.4 1.4 0.0021 18.3 1.4 1.6 1 0 0 1 1 1 1 Bacterial Ig domain Dpy19 PF10034.9 gi|282165393|ref|YP_003357778.1| - 0.037 12.3 0.1 0.037 12.3 0.1 1.5 2 0 0 2 2 2 0 Q-cell neuroblast polarisation Pilin_N PF07790.11 gi|282165394|ref|YP_003357779.1| - 0.041 14.8 1.4 0.059 14.3 1.4 1.2 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal PsbI PF02532.14 gi|282165394|ref|YP_003357779.1| - 0.13 12.2 3.1 0.26 11.3 3.1 1.4 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) Radical_SAM PF04055.21 gi|282165395|ref|YP_003357780.1| - 1.2e-22 81.0 0.1 2.3e-22 80.2 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|282165395|ref|YP_003357780.1| - 9.7e-08 32.4 0.0 2.7e-07 31.0 0.0 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|282165395|ref|YP_003357780.1| - 1.5e-05 25.3 0.0 3.1e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|282165395|ref|YP_003357780.1| - 0.0014 18.7 0.0 0.003 17.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2076 PF09849.9 gi|282165396|ref|YP_003357781.1| - 2.6 8.0 6.9 4 7.4 6.9 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) Phage_HK97_TLTM PF06120.11 gi|282165397|ref|YP_003357782.1| - 0.00088 18.5 0.1 0.0011 18.2 0.1 1.2 1 0 0 1 1 1 1 Tail length tape measure protein Phage_holin_3_6 PF07332.11 gi|282165397|ref|YP_003357782.1| - 0.0015 18.5 6.4 0.002 18.1 6.4 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III AbiEi_4 PF13338.6 gi|282165397|ref|YP_003357782.1| - 0.0025 17.9 0.0 0.0045 17.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin DUF4131 PF13567.6 gi|282165397|ref|YP_003357782.1| - 0.004 16.8 0.4 0.005 16.5 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) DUF1129 PF06570.11 gi|282165397|ref|YP_003357782.1| - 0.0053 16.3 3.3 0.0067 15.9 3.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1129) DUF2427 PF10348.9 gi|282165397|ref|YP_003357782.1| - 0.03 14.1 1.1 0.043 13.6 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) Halogen_Hydrol PF10112.9 gi|282165397|ref|YP_003357782.1| - 0.036 14.1 0.4 0.044 13.8 0.4 1.2 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF2207 PF09972.9 gi|282165397|ref|YP_003357782.1| - 0.045 12.5 0.5 0.045 12.5 0.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Fimbrial_K88 PF02432.15 gi|282165397|ref|YP_003357782.1| - 0.048 13.6 0.0 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 Fimbrial, major and minor subunit Trp_oprn_chp PF09534.10 gi|282165397|ref|YP_003357782.1| - 0.066 13.0 2.4 0.092 12.5 2.4 1.2 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) YtpI PF14007.6 gi|282165397|ref|YP_003357782.1| - 0.26 11.5 4.5 0.4 10.9 4.5 1.2 1 0 0 1 1 1 0 YtpI-like protein ABC2_membrane_2 PF12679.7 gi|282165397|ref|YP_003357782.1| - 2.2 7.5 9.6 2.9 7.1 9.6 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein CTP_transf_1 PF01148.20 gi|282165398|ref|YP_003357783.1| - 1.4e-07 31.6 7.3 5.1e-07 29.7 7.4 1.7 1 1 0 1 1 1 1 Cytidylyltransferase family SDH_alpha PF03313.15 gi|282165398|ref|YP_003357783.1| - 0.05 13.3 0.9 0.055 13.1 0.9 1.1 1 0 0 1 1 1 0 Serine dehydratase alpha chain DUF1269 PF06897.12 gi|282165398|ref|YP_003357783.1| - 0.15 12.4 2.3 0.29 11.5 2.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) AIRS_C PF02769.22 gi|282165399|ref|YP_003357784.1| - 3.6e-25 88.9 0.0 6.4e-25 88.1 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|282165399|ref|YP_003357784.1| - 1.8e-16 60.6 0.8 2.9e-16 59.9 0.8 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain RRM_1 PF00076.22 gi|282165399|ref|YP_003357784.1| - 0.1 12.4 0.0 0.35 10.7 0.0 1.9 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HTH_3 PF01381.22 gi|282165400|ref|YP_003357785.1| - 1.3e-16 60.4 0.0 1.4e-16 60.2 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|282165400|ref|YP_003357785.1| - 1.9e-13 50.2 0.0 2.1e-13 50.1 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|282165400|ref|YP_003357785.1| - 1.1e-10 41.6 0.0 1.3e-10 41.4 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|282165400|ref|YP_003357785.1| - 0.00012 21.8 0.0 0.00015 21.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|282165400|ref|YP_003357785.1| - 0.00017 21.9 0.0 0.0002 21.7 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.6 gi|282165400|ref|YP_003357785.1| - 0.00053 19.9 0.1 0.00075 19.4 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|282165400|ref|YP_003357785.1| - 0.0026 17.7 0.0 0.0038 17.1 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|282165400|ref|YP_003357785.1| - 0.0038 16.7 0.0 0.0057 16.2 0.0 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|282165400|ref|YP_003357785.1| - 0.011 15.2 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.6 gi|282165400|ref|YP_003357785.1| - 0.057 13.2 0.0 0.097 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|282165400|ref|YP_003357785.1| - 0.07 13.0 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF1323 PF07037.11 gi|282165400|ref|YP_003357785.1| - 0.091 13.2 0.0 0.12 12.7 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) MarR_2 PF12802.7 gi|282165400|ref|YP_003357785.1| - 0.1 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF2178 PF09946.9 gi|282165401|ref|YP_003357786.1| - 3.4e-05 24.0 6.3 5.4e-05 23.3 6.3 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2178) PIG-F PF06699.11 gi|282165401|ref|YP_003357786.1| - 7.4e-05 23.0 3.1 8.9e-05 22.7 3.1 1.0 1 0 0 1 1 1 1 GPI biosynthesis protein family Pig-F AveC_like PF17198.4 gi|282165401|ref|YP_003357786.1| - 0.0035 16.8 0.7 0.0044 16.5 0.7 1.3 1 0 0 1 1 1 1 Spirocyclase AveC-like UbiA PF01040.18 gi|282165401|ref|YP_003357786.1| - 0.016 14.5 10.2 0.02 14.2 10.2 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family Trp_oprn_chp PF09534.10 gi|282165401|ref|YP_003357786.1| - 0.064 13.1 7.4 0.08 12.7 7.4 1.2 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF4381 PF14316.6 gi|282165401|ref|YP_003357786.1| - 0.14 12.3 0.3 0.14 12.3 0.3 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4381) Sec61_beta PF03911.16 gi|282165401|ref|YP_003357786.1| - 0.18 11.8 0.5 0.18 11.8 0.5 3.1 4 0 0 4 4 4 0 Sec61beta family DUF2232 PF09991.9 gi|282165401|ref|YP_003357786.1| - 0.21 10.7 11.2 0.11 11.7 1.7 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2232) DUF2244 PF10003.9 gi|282165401|ref|YP_003357786.1| - 0.27 10.9 7.4 4.3 7.0 0.2 2.1 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) DUF3796 PF12676.7 gi|282165401|ref|YP_003357786.1| - 0.43 11.0 6.7 0.17 12.3 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3796) DUF3040 PF11239.8 gi|282165401|ref|YP_003357786.1| - 0.61 10.4 9.6 4.1 7.8 2.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) 2TM PF13239.6 gi|282165401|ref|YP_003357786.1| - 2 8.8 5.0 3.1 8.1 0.1 2.1 2 0 0 2 2 2 0 2TM domain DUF2070 PF09843.9 gi|282165401|ref|YP_003357786.1| - 2 6.6 7.1 2.2 6.5 7.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Tetraspanin PF00335.20 gi|282165401|ref|YP_003357786.1| - 5.3 6.7 6.4 1.5 8.5 3.3 1.7 1 1 0 1 1 1 0 Tetraspanin family PBP PF01161.20 gi|282165402|ref|YP_003357787.1| - 1.6e-40 138.4 0.0 1.9e-40 138.2 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Prok-RING_1 PF14446.6 gi|282165403|ref|YP_003357788.1| - 0.078 12.9 1.4 0.15 12.0 1.4 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Cupin_3 PF05899.12 gi|282165403|ref|YP_003357788.1| - 0.089 12.5 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF861) OrfB_Zn_ribbon PF07282.11 gi|282165403|ref|YP_003357788.1| - 0.11 12.4 0.3 0.23 11.4 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ribosomal_S27e PF01667.17 gi|282165403|ref|YP_003357788.1| - 0.13 12.0 0.4 0.21 11.3 0.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|282165403|ref|YP_003357788.1| - 0.2 11.2 1.3 0.36 10.4 1.3 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding TF_Zn_Ribbon PF08271.12 gi|282165404|ref|YP_003357789.1| - 0.0028 17.1 0.2 0.0051 16.3 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|282165404|ref|YP_003357789.1| - 0.0041 16.5 0.5 1.4 8.4 0.1 2.6 2 0 0 2 2 2 2 zinc-ribbon domain zf-C2HC5 PF06221.13 gi|282165404|ref|YP_003357789.1| - 0.085 12.9 0.4 0.16 11.9 0.4 1.4 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Herpes_glycoH_C PF17488.2 gi|282165404|ref|YP_003357789.1| - 0.14 12.0 0.1 0.45 10.3 0.0 1.7 1 1 1 2 2 2 0 Herpesvirus glycoprotein H C-terminal domain Lar_restr_allev PF14354.6 gi|282165404|ref|YP_003357789.1| - 0.14 12.5 0.1 0.35 11.3 0.1 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-IS66 PF13005.7 gi|282165404|ref|YP_003357789.1| - 0.14 12.5 0.8 12 6.4 0.2 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Adeno_E3_CR2 PF02439.15 gi|282165404|ref|YP_003357789.1| - 4 7.3 6.5 1.2 8.9 2.4 2.1 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 Ribosomal_S27e PF01667.17 gi|282165405|ref|YP_003357790.1| - 0.078 12.7 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein S27 Phage_holin_3_5 PF16085.5 gi|282165405|ref|YP_003357790.1| - 0.12 12.5 0.1 0.51 10.5 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage holin Hol, superfamily III zinc_ribbon_2 PF13240.6 gi|282165405|ref|YP_003357790.1| - 0.15 11.8 4.3 0.3 10.9 4.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ACC PF17848.1 gi|282165405|ref|YP_003357790.1| - 0.94 9.6 4.2 8.7 6.5 0.7 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 gi|282165405|ref|YP_003357790.1| - 1.2 8.6 3.8 5.6 6.5 3.8 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Band_7_1 PF13421.6 gi|282165406|ref|YP_003357791.1| - 1.6e-34 119.5 0.5 2e-34 119.2 0.5 1.1 1 0 0 1 1 1 1 SPFH domain-Band 7 family DZR PF12773.7 gi|282165406|ref|YP_003357791.1| - 3.8e-22 78.0 42.3 2.7e-11 43.3 11.0 2.2 1 1 2 3 3 3 3 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|282165406|ref|YP_003357791.1| - 9.8e-19 66.4 29.6 7.3e-07 28.7 2.7 3.3 3 0 0 3 3 3 3 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|282165406|ref|YP_003357791.1| - 6.1e-13 47.7 30.1 4.5e-05 22.7 4.1 3.3 1 1 2 3 3 3 3 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|282165406|ref|YP_003357791.1| - 2.5e-09 37.7 14.3 0.018 15.8 0.1 3.3 3 0 0 3 3 3 3 zinc-ribbon family Band_7 PF01145.25 gi|282165406|ref|YP_003357791.1| - 0.0015 18.6 0.4 0.0022 18.1 0.4 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family DHHC PF01529.20 gi|282165406|ref|YP_003357791.1| - 0.17 12.0 10.3 11 6.1 0.3 3.3 1 1 2 3 3 3 0 DHHC palmitoyltransferase zf-C3HC4_3 PF13920.6 gi|282165406|ref|YP_003357791.1| - 0.2 11.6 16.0 4.3 7.3 8.9 3.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) NOB1_Zn_bind PF08772.11 gi|282165406|ref|YP_003357791.1| - 0.71 10.1 22.4 1.6 8.9 3.6 3.5 1 1 2 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like UPF0547 PF10571.9 gi|282165406|ref|YP_003357791.1| - 1.6 8.9 31.4 0.77 9.9 5.1 3.4 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.11 gi|282165406|ref|YP_003357791.1| - 1.7 8.4 23.8 1.9 8.2 1.5 4.2 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|282165406|ref|YP_003357791.1| - 1.9 8.5 22.7 4.9 7.2 6.8 3.3 1 1 2 3 3 3 0 Prokaryotic RING finger family 1 Gpr1_Fun34_YaaH PF01184.19 gi|282165408|ref|YP_003357793.1| - 7.8e-42 143.2 19.9 1.1e-41 142.8 19.9 1.1 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Rhodanese PF00581.20 gi|282165409|ref|YP_003357794.1| - 2.6e-19 69.7 0.0 3.1e-19 69.5 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain MFS_1 PF07690.16 gi|282165410|ref|YP_003357795.1| - 8.2e-17 61.2 36.6 8.2e-17 61.2 36.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily ACT_5 PF13710.6 gi|282165411|ref|YP_003357796.1| - 0.023 14.5 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 ACT domain SBP_bac_3 PF00497.20 gi|282165412|ref|YP_003357797.1| - 6.8e-65 218.6 1.9 8.2e-65 218.4 1.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|282165412|ref|YP_003357797.1| - 9.2e-09 35.5 0.1 4.6e-07 30.0 0.1 2.2 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|282165412|ref|YP_003357797.1| - 8.5e-06 25.9 0.4 1.4e-05 25.1 0.4 1.3 1 0 0 1 1 1 1 NMT1/THI5 like DUF4405 PF14358.6 gi|282165412|ref|YP_003357797.1| - 0.18 12.4 0.2 0.31 11.6 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4405) BPD_transp_1 PF00528.22 gi|282165413|ref|YP_003357798.1| - 8.5e-18 64.7 8.2 8.5e-18 64.7 8.2 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PEGA PF08308.11 gi|282165413|ref|YP_003357798.1| - 5.1e-14 51.9 0.7 5.9e-08 32.5 0.1 2.6 2 0 0 2 2 2 2 PEGA domain CarbopepD_reg_2 PF13715.6 gi|282165413|ref|YP_003357798.1| - 7.9e-09 35.4 1.2 0.0016 18.4 0.2 2.5 2 0 0 2 2 2 2 CarboxypepD_reg-like domain CarboxypepD_reg PF13620.6 gi|282165413|ref|YP_003357798.1| - 2.8e-08 33.9 5.2 0.0028 17.9 0.3 2.7 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF2846 PF11008.8 gi|282165413|ref|YP_003357798.1| - 0.00024 21.1 0.1 0.14 12.2 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF2846) CBM77 PF18283.1 gi|282165413|ref|YP_003357798.1| - 0.054 13.9 0.3 0.79 10.1 0.0 2.5 2 0 0 2 2 2 0 Carbohydrate binding module 77 Claudin_2 PF13903.6 gi|282165413|ref|YP_003357798.1| - 0.12 12.1 3.5 0.34 10.6 0.7 2.3 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction Deltameth_res PF16020.5 gi|282165413|ref|YP_003357798.1| - 0.34 10.8 1.8 0.41 10.6 0.1 2.1 2 0 0 2 2 2 0 Deltamethrin resistance ABC_tran PF00005.27 gi|282165414|ref|YP_003357799.1| - 2.9e-38 131.5 0.2 3.9e-38 131.1 0.2 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282165414|ref|YP_003357799.1| - 6.9e-12 45.8 0.0 1e-05 25.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282165414|ref|YP_003357799.1| - 9.7e-11 41.5 1.5 1e-09 38.2 1.5 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|282165414|ref|YP_003357799.1| - 5.3e-06 26.9 0.0 7.5e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|282165414|ref|YP_003357799.1| - 3.4e-05 24.1 0.3 0.00036 20.8 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|282165414|ref|YP_003357799.1| - 3.9e-05 23.5 0.0 0.00066 19.5 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|282165414|ref|YP_003357799.1| - 4.2e-05 23.2 0.0 0.00011 21.9 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|282165414|ref|YP_003357799.1| - 5.6e-05 23.7 0.2 0.00012 22.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|282165414|ref|YP_003357799.1| - 8.5e-05 21.5 0.9 0.072 11.9 0.1 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class ATPase_2 PF01637.18 gi|282165414|ref|YP_003357799.1| - 9.1e-05 22.5 0.1 0.0003 20.8 0.1 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|282165414|ref|YP_003357799.1| - 0.00073 20.0 0.8 0.019 15.4 0.7 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|282165414|ref|YP_003357799.1| - 0.0011 18.2 0.2 0.007 15.6 0.2 1.9 1 1 0 1 1 1 1 NB-ARC domain AAA_30 PF13604.6 gi|282165414|ref|YP_003357799.1| - 0.0018 18.0 0.1 0.0031 17.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|282165414|ref|YP_003357799.1| - 0.0023 17.9 0.2 0.0043 17.0 0.1 1.6 1 1 0 1 1 1 1 RsgA GTPase TniB PF05621.11 gi|282165414|ref|YP_003357799.1| - 0.0024 17.3 0.5 0.81 9.1 0.3 2.4 1 1 1 2 2 2 1 Bacterial TniB protein Rad17 PF03215.15 gi|282165414|ref|YP_003357799.1| - 0.0037 17.2 0.1 0.0094 15.9 0.1 1.7 1 1 0 1 1 1 1 Rad17 P-loop domain G-alpha PF00503.20 gi|282165414|ref|YP_003357799.1| - 0.0046 16.2 0.0 0.0054 15.9 0.0 1.3 1 1 0 1 1 1 1 G-protein alpha subunit AAA_5 PF07728.14 gi|282165414|ref|YP_003357799.1| - 0.0051 16.8 0.5 1.5 8.8 0.0 2.3 1 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|282165414|ref|YP_003357799.1| - 0.0089 16.1 0.1 0.37 10.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|282165414|ref|YP_003357799.1| - 0.013 14.2 0.1 1.1 7.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|282165414|ref|YP_003357799.1| - 0.016 15.7 0.1 0.028 15.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|282165414|ref|YP_003357799.1| - 0.021 14.2 0.1 0.11 11.9 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Adeno_IVa2 PF02456.15 gi|282165414|ref|YP_003357799.1| - 0.021 13.6 0.2 0.2 10.4 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein p6 PF17548.2 gi|282165414|ref|YP_003357799.1| - 0.035 14.1 1.4 6.8 6.7 0.1 2.7 2 1 1 3 3 3 0 Histone-like Protein p6 FtsK_SpoIIIE PF01580.18 gi|282165414|ref|YP_003357799.1| - 0.04 13.3 0.2 0.16 11.3 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_27 PF13514.6 gi|282165414|ref|YP_003357799.1| - 0.045 13.3 0.0 0.11 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|282165414|ref|YP_003357799.1| - 0.057 13.7 1.0 0.098 13.0 1.0 1.5 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|282165414|ref|YP_003357799.1| - 0.064 13.0 0.2 0.58 9.9 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|282165414|ref|YP_003357799.1| - 0.082 13.2 0.7 0.97 9.7 0.7 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|282165414|ref|YP_003357799.1| - 0.083 13.1 0.1 0.2 11.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|282165414|ref|YP_003357799.1| - 0.086 12.5 0.1 0.25 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|282165414|ref|YP_003357799.1| - 0.13 12.2 1.1 5.6 6.8 0.0 2.4 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 gi|282165414|ref|YP_003357799.1| - 0.16 12.2 0.1 0.41 10.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain HTH_3 PF01381.22 gi|282165416|ref|YP_003357801.1| - 3.9e-09 36.4 0.0 1.3e-08 34.7 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|282165416|ref|YP_003357801.1| - 2.9e-05 24.0 0.0 0.00013 21.9 0.0 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|282165416|ref|YP_003357801.1| - 0.0002 21.6 0.0 0.00051 20.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4498 PF14926.6 gi|282165416|ref|YP_003357801.1| - 0.084 12.2 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4498) HGWP PF03578.15 gi|282165416|ref|YP_003357801.1| - 0.17 11.4 0.1 0.33 10.5 0.1 1.4 1 0 0 1 1 1 0 HGWP repeat ACP_syn_III_C PF08541.10 gi|282165417|ref|YP_003357802.1| - 6.8e-12 45.4 0.0 1.7e-10 40.9 0.0 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.17 gi|282165417|ref|YP_003357802.1| - 0.00081 19.3 0.6 0.0014 18.6 0.6 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|282165417|ref|YP_003357802.1| - 0.0021 17.8 0.2 0.018 14.7 0.0 2.0 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|282165417|ref|YP_003357802.1| - 0.017 14.5 1.8 0.029 13.7 1.8 1.4 1 0 0 1 1 1 0 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|282165417|ref|YP_003357802.1| - 2 8.3 10.9 0.35 10.7 4.5 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 gi|282165418|ref|YP_003357803.1| - 1.7e-27 96.5 5.9 7.7e-26 91.0 5.9 2.1 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|282165418|ref|YP_003357803.1| - 1.4e-10 40.9 1.8 2.8e-09 36.7 1.7 2.5 1 1 1 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|282165418|ref|YP_003357803.1| - 5.1e-06 26.3 8.0 8.7e-06 25.5 4.7 2.7 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|282165418|ref|YP_003357803.1| - 0.0072 16.3 0.3 0.53 10.3 0.0 2.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain SpoVAD PF07451.11 gi|282165418|ref|YP_003357803.1| - 0.0099 14.6 0.1 0.02 13.6 0.1 1.4 1 0 0 1 1 1 1 Stage V sporulation protein AD (SpoVAD) RbcS PF12338.8 gi|282165418|ref|YP_003357803.1| - 0.13 12.5 0.0 0.49 10.6 0.0 2.0 2 0 0 2 2 2 0 Ribulose-1,5-bisphosphate carboxylase small subunit ACP_syn_III PF08545.10 gi|282165418|ref|YP_003357803.1| - 0.24 11.3 4.6 3.4 7.6 0.3 2.7 2 1 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OB_aCoA_assoc PF01796.17 gi|282165419|ref|YP_003357804.1| - 1.2e-18 66.8 0.1 1.6e-18 66.4 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|282165419|ref|YP_003357804.1| - 7.8e-12 44.8 3.7 1.2e-11 44.2 3.7 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-CCHC_4 PF14392.6 gi|282165419|ref|YP_003357804.1| - 0.13 12.0 1.1 0.69 9.7 0.1 2.2 2 0 0 2 2 2 0 Zinc knuckle tRNA_anti-codon PF01336.25 gi|282165420|ref|YP_003357805.1| - 3.6e-05 23.7 0.0 4.8e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain CorA PF01544.18 gi|282165421|ref|YP_003357806.1| - 1.7e-69 234.4 0.4 2.1e-69 234.1 0.4 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Syntaxin-18_N PF10496.9 gi|282165421|ref|YP_003357806.1| - 0.036 14.3 0.1 0.41 10.9 0.0 2.2 2 0 0 2 2 2 0 SNARE-complex protein Syntaxin-18 N-terminus Flavodoxin_5 PF12724.7 gi|282165422|ref|YP_003357807.1| - 1.1e-09 38.6 0.0 1.3e-09 38.4 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|282165422|ref|YP_003357807.1| - 2.8e-08 34.1 0.0 4.2e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin FMN_red PF03358.15 gi|282165422|ref|YP_003357807.1| - 7.3e-05 22.5 0.0 0.02 14.6 0.0 2.2 1 1 1 2 2 2 2 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|282165422|ref|YP_003357807.1| - 0.00017 21.3 0.2 0.00026 20.7 0.2 1.4 1 1 0 1 1 1 1 Flavodoxin domain V4R PF02830.18 gi|282165423|ref|YP_003357808.1| - 3.9e-16 58.8 1.3 6.6e-16 58.1 1.3 1.4 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.20 gi|282165423|ref|YP_003357808.1| - 2.9e-10 39.8 0.1 6.6e-10 38.7 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|282165423|ref|YP_003357808.1| - 1.7e-06 27.8 0.1 2.8e-06 27.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|282165423|ref|YP_003357808.1| - 3.9e-06 26.8 0.0 7.4e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|282165423|ref|YP_003357808.1| - 0.0026 17.3 0.3 0.0063 16.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|282165423|ref|YP_003357808.1| - 0.0045 16.9 0.2 0.0099 15.8 0.2 1.6 1 0 0 1 1 1 1 MarR family Sulfolobus_pRN PF05584.11 gi|282165423|ref|YP_003357808.1| - 0.006 16.6 0.1 0.012 15.7 0.1 1.4 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein TrmB PF01978.19 gi|282165423|ref|YP_003357808.1| - 0.013 15.4 0.0 0.03 14.2 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|282165423|ref|YP_003357808.1| - 0.014 15.1 0.1 0.029 14.2 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|282165423|ref|YP_003357808.1| - 0.12 12.9 0.1 0.25 11.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Prismane PF03063.20 gi|282165424|ref|YP_003357809.1| - 1.4e-173 578.2 0.0 1.6e-173 578.1 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family HEAT_2 PF13646.6 gi|282165425|ref|YP_003357810.1| - 2.6e-18 66.2 0.0 3.4e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 HEAT repeats HEAT PF02985.22 gi|282165425|ref|YP_003357810.1| - 7.8e-10 38.2 0.0 0.0072 16.5 0.0 3.1 3 0 0 3 3 3 2 HEAT repeat HEAT_PBS PF03130.16 gi|282165425|ref|YP_003357810.1| - 1.6e-09 37.5 0.2 6.3e-06 26.4 0.0 2.5 2 0 0 2 2 2 2 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|282165425|ref|YP_003357810.1| - 1.4e-08 35.1 0.0 0.00057 20.3 0.1 2.9 3 0 0 3 3 3 2 HEAT-like repeat Cnd1 PF12717.7 gi|282165425|ref|YP_003357810.1| - 6.4e-06 26.3 0.6 0.0008 19.5 0.3 2.7 1 1 2 3 3 3 3 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|282165425|ref|YP_003357810.1| - 8.2e-06 25.7 0.1 5.7e-05 23.0 0.0 2.3 1 1 2 3 3 3 1 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|282165425|ref|YP_003357810.1| - 0.0019 16.9 0.0 0.16 10.5 0.0 2.0 2 0 0 2 2 2 2 Adaptin N terminal region Aconitase_B_N PF11791.8 gi|282165425|ref|YP_003357810.1| - 0.12 12.5 0.0 0.32 11.0 0.0 1.7 1 1 1 2 2 2 0 Aconitate B N-terminal domain HMA PF00403.26 gi|282165426|ref|YP_003357811.1| - 8.4e-16 58.2 1.1 9.9e-16 57.9 1.1 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain Spore_YhcN_YlaJ PF09580.10 gi|282165426|ref|YP_003357811.1| - 0.0014 18.7 0.2 0.0016 18.5 0.2 1.1 1 0 0 1 1 1 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Rubredoxin PF00301.20 gi|282165427|ref|YP_003357812.1| - 2.2e-24 85.2 6.4 2.4e-24 85.1 6.4 1.0 1 0 0 1 1 1 1 Rubredoxin zf-RanBP PF00641.18 gi|282165427|ref|YP_003357812.1| - 0.0031 16.8 3.4 0.21 10.9 0.2 2.1 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others zf-MIZ PF02891.20 gi|282165427|ref|YP_003357812.1| - 0.42 10.4 0.2 0.42 10.4 0.2 2.0 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger ADK_lid PF05191.14 gi|282165427|ref|YP_003357812.1| - 0.53 10.3 2.7 3.7 7.6 2.7 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid DUF2148 PF09918.9 gi|282165428|ref|YP_003357813.1| - 6.1e-27 93.5 1.5 9.6e-27 92.8 0.5 1.8 2 0 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) Nitroreductase PF00881.24 gi|282165428|ref|YP_003357813.1| - 0.042 13.9 0.0 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 Nitroreductase family Bclx_interact PF08945.10 gi|282165428|ref|YP_003357813.1| - 0.24 11.2 0.5 0.41 10.5 0.5 1.3 1 0 0 1 1 1 0 Bcl-x interacting, BH3 domain PALP PF00291.25 gi|282165428|ref|YP_003357813.1| - 0.31 10.4 4.5 4.9 6.5 2.0 2.1 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme XPG_I PF00867.18 gi|282165429|ref|YP_003357814.1| - 2e-27 95.4 0.0 3.7e-27 94.5 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|282165429|ref|YP_003357814.1| - 7.8e-18 64.8 0.0 1.3e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|282165429|ref|YP_003357814.1| - 1.1e-05 26.0 0.0 2.5e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 gi|282165429|ref|YP_003357814.1| - 0.045 13.8 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF169 PF02596.15 gi|282165430|ref|YP_003357815.1| - 4.8e-64 216.1 0.0 5.3e-64 215.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 AP_endonuc_2 PF01261.24 gi|282165431|ref|YP_003357816.1| - 3.8e-08 33.0 0.0 2.3e-05 23.9 0.0 2.1 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel GXGXG PF01493.19 gi|282165433|ref|YP_003357818.1| - 1.3e-06 28.1 24.3 0.064 12.9 10.6 3.4 1 1 2 3 3 3 3 GXGXG motif Amidohydro_3 PF07969.11 gi|282165434|ref|YP_003357819.1| - 2.6e-84 284.4 0.5 3e-84 284.2 0.5 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|282165434|ref|YP_003357819.1| - 1.3e-09 37.9 0.2 5.6e-06 25.9 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family Phage_RpbA PF10789.9 gi|282165434|ref|YP_003357819.1| - 0.14 12.2 0.0 0.39 10.8 0.0 1.7 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA Molybdopterin PF00384.22 gi|282165435|ref|YP_003357820.1| - 3.1e-10 39.6 0.0 6.9e-07 28.6 0.0 2.7 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|282165436|ref|YP_003357821.1| - 4.2e-14 52.5 0.0 5e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FlpD PF02662.16 gi|282165437|ref|YP_003357822.1| - 8.5e-51 171.1 0.0 1.1e-50 170.8 0.0 1.1 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.27 gi|282165438|ref|YP_003357823.1| - 1.4e-15 56.4 40.1 8.3e-06 25.4 2.4 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Pyr_redox_2 PF07992.14 gi|282165438|ref|YP_003357823.1| - 5.3e-14 52.1 0.0 9.7e-13 48.0 0.0 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|282165438|ref|YP_003357823.1| - 6.1e-14 52.3 31.5 1.7e-09 38.1 7.9 4.0 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282165438|ref|YP_003357823.1| - 1.3e-13 50.8 30.6 2.3e-07 30.9 8.5 4.4 4 1 0 4 4 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282165438|ref|YP_003357823.1| - 2.3e-11 44.4 22.8 0.0017 19.2 1.4 4.9 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|282165438|ref|YP_003357823.1| - 1.1e-10 41.5 31.8 1.7e-06 28.0 10.0 4.2 4 1 1 5 5 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282165438|ref|YP_003357823.1| - 1.9e-08 34.0 43.2 0.005 16.9 3.9 5.3 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282165438|ref|YP_003357823.1| - 2.1e-08 34.2 37.6 4.1e-06 26.9 9.1 4.0 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282165438|ref|YP_003357823.1| - 2.3e-07 30.5 39.8 0.021 14.9 3.8 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain FAD_oxidored PF12831.7 gi|282165438|ref|YP_003357823.1| - 1.3e-06 28.1 0.0 1.3e-06 28.1 0.0 1.9 2 0 0 2 2 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|282165438|ref|YP_003357823.1| - 1.7e-05 24.1 0.2 3.8e-05 22.9 0.2 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|282165438|ref|YP_003357823.1| - 2.9e-05 24.5 33.1 0.00017 22.0 5.8 4.6 3 2 3 6 6 6 5 4Fe-4S dicluster domain GIDA PF01134.22 gi|282165438|ref|YP_003357823.1| - 8.8e-05 21.7 0.0 0.00017 20.8 0.0 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Fer4_22 PF17179.4 gi|282165438|ref|YP_003357823.1| - 0.00031 21.5 20.7 0.8 10.6 1.4 4.6 4 0 0 4 4 4 3 4Fe-4S dicluster domain NAD_binding_8 PF13450.6 gi|282165438|ref|YP_003357823.1| - 0.00063 19.9 0.0 0.0016 18.6 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_8 PF13183.6 gi|282165438|ref|YP_003357823.1| - 0.00069 20.0 33.0 0.024 15.1 10.8 4.3 3 2 2 5 5 4 4 4Fe-4S dicluster domain Pyr_redox_3 PF13738.6 gi|282165438|ref|YP_003357823.1| - 0.0022 17.3 0.2 0.025 13.8 0.0 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|282165438|ref|YP_003357823.1| - 0.0032 16.7 0.0 0.0086 15.3 0.0 1.6 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.12 gi|282165438|ref|YP_003357823.1| - 0.0078 15.3 0.0 3.1 6.8 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|282165438|ref|YP_003357823.1| - 0.01 15.5 0.1 0.18 11.4 0.2 2.3 2 0 0 2 2 2 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|282165438|ref|YP_003357823.1| - 0.014 14.2 0.3 0.024 13.3 0.3 1.4 1 0 0 1 1 1 0 HI0933-like protein Fer4_4 PF12800.7 gi|282165438|ref|YP_003357823.1| - 0.019 15.4 37.6 0.11 13.0 1.9 5.2 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|282165438|ref|YP_003357823.1| - 0.044 14.3 34.0 0.16 12.6 1.5 5.6 6 0 0 6 6 6 0 4Fe-4S single cluster domain of Ferredoxin I FAD_binding_3 PF01494.19 gi|282165438|ref|YP_003357823.1| - 0.069 12.4 0.3 0.11 11.7 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.21 gi|282165438|ref|YP_003357823.1| - 0.081 12.2 0.2 0.25 10.6 0.0 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Fer4_15 PF13459.6 gi|282165438|ref|YP_003357823.1| - 0.2 12.4 27.9 8.3 7.2 0.5 4.9 3 1 0 3 3 3 0 4Fe-4S single cluster domain CCG PF02754.16 gi|282165439|ref|YP_003357824.1| - 5.3e-34 116.3 4.0 1.6e-19 69.8 0.1 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.6 gi|282165440|ref|YP_003357825.1| - 3e-10 40.5 9.2 4.9e-10 39.8 9.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282165440|ref|YP_003357825.1| - 5.7e-10 39.5 8.3 8.8e-10 38.9 8.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282165440|ref|YP_003357825.1| - 7.2e-09 35.7 8.4 1.2e-08 35.0 8.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282165440|ref|YP_003357825.1| - 5e-07 29.7 8.3 9.9e-07 28.8 8.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|282165440|ref|YP_003357825.1| - 4.9e-05 23.8 9.5 9.8e-05 22.9 9.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282165440|ref|YP_003357825.1| - 0.0035 17.7 10.6 0.15 12.6 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282165440|ref|YP_003357825.1| - 0.017 15.2 5.5 0.041 14.0 5.5 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282165440|ref|YP_003357825.1| - 0.084 13.8 13.1 2.1 9.4 13.5 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|282165440|ref|YP_003357825.1| - 0.16 12.2 5.7 4.1 7.6 0.4 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|282165440|ref|YP_003357825.1| - 0.71 9.7 6.9 1.1 9.1 0.3 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.27 gi|282165440|ref|YP_003357825.1| - 0.78 9.7 13.8 3.3 7.7 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|282165440|ref|YP_003357825.1| - 2.6 8.3 17.6 0.62 10.3 3.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|282165440|ref|YP_003357825.1| - 3.5 8.8 16.4 8.9 7.5 4.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain RecR PF02132.15 gi|282165440|ref|YP_003357825.1| - 7.8 6.2 9.5 4.6 6.9 1.4 2.4 2 0 0 2 2 2 0 RecR protein Fer4_6 PF12837.7 gi|282165440|ref|YP_003357825.1| - 8.2 6.7 12.5 0.95 9.6 2.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|282165441|ref|YP_003357826.1| - 1.9e-46 154.1 77.7 6.3e-09 35.3 3.6 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282165441|ref|YP_003357826.1| - 6.9e-37 125.8 54.0 1.1e-10 41.9 6.9 5.4 4 1 2 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282165441|ref|YP_003357826.1| - 2.9e-26 91.3 68.8 1.2e-05 25.3 11.9 7.3 2 2 6 8 8 8 8 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282165441|ref|YP_003357826.1| - 3.8e-26 91.8 63.2 3.3e-06 28.0 9.1 7.2 5 2 3 8 8 8 8 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|282165441|ref|YP_003357826.1| - 1.3e-25 87.9 70.0 1.6e-05 24.7 3.0 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.6 gi|282165441|ref|YP_003357826.1| - 2.5e-25 88.4 61.9 2.5e-07 30.8 8.1 5.7 2 2 5 7 7 7 7 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282165441|ref|YP_003357826.1| - 4.3e-25 87.6 61.6 1.3e-06 28.5 8.4 6.4 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282165441|ref|YP_003357826.1| - 2e-22 78.2 80.0 2.1e-06 27.6 3.2 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282165441|ref|YP_003357826.1| - 5.5e-16 58.9 51.2 0.00048 20.6 8.6 6.5 5 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282165441|ref|YP_003357826.1| - 8.2e-14 51.8 61.1 0.0058 17.0 11.6 6.5 2 1 6 8 8 8 7 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282165441|ref|YP_003357826.1| - 9.9e-08 31.9 70.8 6.6e-05 23.1 1.3 8.2 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_15 PF13459.6 gi|282165441|ref|YP_003357826.1| - 1.8e-07 31.8 59.2 0.0063 17.2 1.4 8.5 7 2 0 7 7 6 5 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|282165441|ref|YP_003357826.1| - 4.7e-07 30.3 88.2 0.15 13.1 3.7 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_13 PF13370.6 gi|282165441|ref|YP_003357826.1| - 0.00094 19.7 80.6 0.046 14.3 4.1 7.9 7 1 0 7 7 7 5 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|282165441|ref|YP_003357826.1| - 0.0021 18.8 54.7 0.036 14.9 0.1 8.1 6 2 3 9 9 9 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|282165441|ref|YP_003357826.1| - 1.3 9.3 56.1 1.8 8.8 0.1 8.0 4 1 3 7 7 7 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|282165442|ref|YP_003357827.1| - 1e-14 53.6 18.1 1.3e-08 34.2 4.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282165442|ref|YP_003357827.1| - 7.4e-12 45.7 9.4 1.4e-11 44.8 9.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|282165442|ref|YP_003357827.1| - 2.6e-11 44.3 19.0 2.4e-08 34.8 9.6 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|282165442|ref|YP_003357827.1| - 3.5e-11 42.5 13.4 2.9e-07 30.2 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|282165442|ref|YP_003357827.1| - 4.9e-11 42.6 6.9 2e-05 24.6 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|282165442|ref|YP_003357827.1| - 6.5e-11 41.8 16.6 8.7e-06 25.6 4.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|282165442|ref|YP_003357827.1| - 1.2e-09 38.1 26.2 1.4e-07 31.5 14.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282165442|ref|YP_003357827.1| - 2.8e-09 37.0 7.8 4.1e-09 36.5 7.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282165442|ref|YP_003357827.1| - 5.7e-06 26.4 11.2 0.011 16.2 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|282165442|ref|YP_003357827.1| - 7.6e-06 26.7 6.9 0.021 15.7 0.5 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|282165442|ref|YP_003357827.1| - 3.5e-05 24.4 9.7 0.0065 17.2 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|282165442|ref|YP_003357827.1| - 4.5e-05 24.1 21.6 0.0028 18.5 8.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282165442|ref|YP_003357827.1| - 6.8e-05 23.3 10.8 0.00039 20.9 11.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|282165442|ref|YP_003357827.1| - 0.0037 17.7 14.2 0.2 12.1 4.4 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282165442|ref|YP_003357827.1| - 0.036 14.6 13.1 0.19 12.3 2.7 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|282165442|ref|YP_003357827.1| - 2.8 8.2 13.4 7.9 6.7 3.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Oxidored_q6 PF01058.22 gi|282165443|ref|YP_003357828.1| - 3.7e-28 98.0 0.1 6.7e-28 97.1 0.1 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.19 gi|282165444|ref|YP_003357829.1| - 3.8e-37 128.4 0.1 3.1e-21 75.8 0.0 3.1 2 1 1 3 3 3 3 Nickel-dependent hydrogenase Big_3_5 PF16640.5 gi|282165445|ref|YP_003357830.1| - 0.066 13.4 14.4 0.082 13.1 3.8 3.0 2 1 1 3 3 3 0 Bacterial Ig-like domain (group 3) DUF4165 PF13752.6 gi|282165446|ref|YP_003357831.1| - 0.00036 20.5 0.1 0.00087 19.3 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4165) Qn_am_d_aIII PF09099.10 gi|282165446|ref|YP_003357831.1| - 0.044 14.2 0.3 0.081 13.3 0.3 1.5 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain III DUF1180 PF06679.12 gi|282165446|ref|YP_003357831.1| - 0.11 12.9 0.4 0.21 12.0 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) FMN_red PF03358.15 gi|282165447|ref|YP_003357832.1| - 3.8e-26 91.7 0.0 4.9e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|282165447|ref|YP_003357832.1| - 5e-13 49.2 0.0 8.3e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold TctA PF01970.16 gi|282165448|ref|YP_003357833.1| - 5.1e-63 213.2 48.9 6.2e-63 212.9 48.9 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Shadoo PF14999.6 gi|282165448|ref|YP_003357833.1| - 0.4 10.8 4.9 0.9 9.6 0.9 2.8 2 0 0 2 2 2 0 Shadow of prion protein, neuroprotective HisG PF01634.18 gi|282165449|ref|YP_003357834.1| - 2.7e-50 170.5 0.2 3.9e-50 169.9 0.2 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|282165449|ref|YP_003357834.1| - 4.1e-27 94.1 0.2 7.6e-27 93.3 0.2 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|282165449|ref|YP_003357834.1| - 0.00027 20.9 0.1 0.0038 17.2 0.1 2.7 1 1 0 1 1 1 1 NMT1/THI5 like PcrB PF01884.17 gi|282165450|ref|YP_003357835.1| - 2.8e-69 233.0 0.0 3.1e-69 232.9 0.0 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.20 gi|282165450|ref|YP_003357835.1| - 0.0042 16.0 0.1 0.019 13.8 0.0 2.0 2 1 1 3 3 3 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|282165450|ref|YP_003357835.1| - 0.023 14.2 0.0 0.056 12.9 0.0 1.6 2 0 0 2 2 2 0 Histidine biosynthesis protein QRPTase_C PF01729.19 gi|282165450|ref|YP_003357835.1| - 0.06 13.1 0.2 15 5.4 0.1 2.5 2 1 1 3 3 3 0 Quinolinate phosphoribosyl transferase, C-terminal domain Ribul_P_3_epim PF00834.19 gi|282165450|ref|YP_003357835.1| - 0.077 12.4 0.0 0.47 9.8 0.0 2.1 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family B12-binding PF02310.19 gi|282165450|ref|YP_003357835.1| - 0.094 12.8 0.1 9 6.4 0.0 2.3 2 0 0 2 2 2 0 B12 binding domain Methyltransf_25 PF13649.6 gi|282165451|ref|YP_003357836.1| - 6.3e-23 81.3 0.0 9.3e-23 80.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282165451|ref|YP_003357836.1| - 7.6e-23 81.0 0.0 1.1e-22 80.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282165451|ref|YP_003357836.1| - 1.3e-20 73.7 0.0 1.6e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282165451|ref|YP_003357836.1| - 9.9e-15 54.5 0.0 1.2e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|282165451|ref|YP_003357836.1| - 1.1e-14 54.9 0.0 1.8e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282165451|ref|YP_003357836.1| - 3.9e-14 52.8 0.0 5e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|282165451|ref|YP_003357836.1| - 3.1e-07 30.2 0.0 4.5e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|282165451|ref|YP_003357836.1| - 1.3e-06 28.1 0.0 1.8e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|282165451|ref|YP_003357836.1| - 0.00062 19.7 0.0 0.0018 18.2 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_32 PF13679.6 gi|282165451|ref|YP_003357836.1| - 0.00069 19.6 0.0 0.00095 19.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|282165451|ref|YP_003357836.1| - 0.001 18.4 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_4 PF02390.17 gi|282165451|ref|YP_003357836.1| - 0.0028 17.1 0.0 0.0053 16.2 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|282165451|ref|YP_003357836.1| - 0.0031 17.4 0.0 0.0043 17.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|282165451|ref|YP_003357836.1| - 0.0077 15.6 0.0 0.0098 15.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|282165451|ref|YP_003357836.1| - 0.016 14.6 0.0 0.018 14.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_29 PF03141.16 gi|282165451|ref|YP_003357836.1| - 0.062 11.8 0.0 0.071 11.6 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase UPF0020 PF01170.18 gi|282165451|ref|YP_003357836.1| - 0.072 12.8 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PCMT PF01135.19 gi|282165451|ref|YP_003357836.1| - 0.19 11.4 0.0 0.27 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GidB PF02527.15 gi|282165451|ref|YP_003357836.1| - 0.23 10.8 0.0 0.29 10.4 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G UbiA PF01040.18 gi|282165452|ref|YP_003357837.1| - 5.1e-39 134.1 20.4 7.3e-39 133.6 19.9 1.5 1 1 0 1 1 1 1 UbiA prenyltransferase family YtpI PF14007.6 gi|282165452|ref|YP_003357837.1| - 0.0049 17.0 13.8 0.21 11.8 0.4 3.7 3 1 1 4 4 4 2 YtpI-like protein DUF2254 PF10011.9 gi|282165452|ref|YP_003357837.1| - 0.76 8.5 4.8 0.13 11.0 0.3 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2254) DUF3021 PF11457.8 gi|282165452|ref|YP_003357837.1| - 5.5 7.3 11.6 1.5 9.2 5.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3021) Ribo_biogen_C PF04034.13 gi|282165453|ref|YP_003357838.1| - 6.7e-44 148.7 0.0 8.3e-44 148.4 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|282165453|ref|YP_003357838.1| - 1.7e-09 37.3 0.0 2.5e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI PAS_9 PF13426.7 gi|282165454|ref|YP_003357839.1| - 1.5e-34 118.4 0.0 4.8e-14 52.5 0.0 3.6 3 1 0 3 3 3 3 PAS domain PAS PF00989.25 gi|282165454|ref|YP_003357839.1| - 3.4e-33 114.0 0.0 2.9e-10 40.1 0.0 4.9 5 0 0 5 5 5 3 PAS fold PAS_4 PF08448.10 gi|282165454|ref|YP_003357839.1| - 3.1e-28 98.2 0.0 1.3e-08 35.0 0.0 3.9 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|282165454|ref|YP_003357839.1| - 1.7e-25 88.5 0.0 6.4e-08 32.5 0.0 4.0 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.26 gi|282165454|ref|YP_003357839.1| - 1e-18 67.9 0.0 2.1e-18 66.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|282165454|ref|YP_003357839.1| - 3.7e-14 52.8 0.0 9.6e-09 35.4 0.0 4.1 4 0 0 4 4 4 3 PAS fold PAS_7 PF12860.7 gi|282165454|ref|YP_003357839.1| - 4.8e-05 23.5 0.1 0.057 13.6 0.0 4.1 3 1 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|282165454|ref|YP_003357839.1| - 0.00061 19.7 0.0 0.0047 16.9 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain DEAD PF00270.29 gi|282165455|ref|YP_003357840.1| - 4.3e-25 88.5 0.0 8.3e-24 84.3 0.0 2.8 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|282165455|ref|YP_003357840.1| - 1.4e-11 44.7 0.1 6.1e-10 39.4 0.1 3.0 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|282165455|ref|YP_003357840.1| - 8.5e-10 39.1 0.1 1.4e-08 35.2 0.2 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|282165455|ref|YP_003357840.1| - 0.017 15.0 0.1 1.6 8.8 0.0 3.4 3 0 0 3 3 3 0 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|282165455|ref|YP_003357840.1| - 0.034 14.0 0.0 0.13 12.1 0.0 2.0 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HemN_C PF06969.16 gi|282165455|ref|YP_003357840.1| - 0.035 14.2 0.1 0.32 11.1 0.0 2.5 2 0 0 2 2 2 0 HemN C-terminal domain Nudix_hydro PF18290.1 gi|282165455|ref|YP_003357840.1| - 0.081 12.9 1.5 0.28 11.2 1.5 1.9 1 1 0 1 1 1 0 Nudix hydrolase domain CGI-121 PF08617.10 gi|282165456|ref|YP_003357841.1| - 3.5e-09 37.0 0.0 4.1e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 YdaS_antitoxin PF15943.5 gi|282165456|ref|YP_003357841.1| - 0.068 13.1 0.1 15 5.5 0.0 2.7 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT RC-P840_PscD PF10657.9 gi|282165456|ref|YP_003357841.1| - 0.11 12.6 0.1 0.14 12.3 0.1 1.2 1 0 0 1 1 1 0 Photosystem P840 reaction centre protein PscD FdhD-NarQ PF02634.15 gi|282165457|ref|YP_003357842.1| - 6.4e-53 179.9 0.0 7.6e-53 179.6 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family TFX_C PF14601.6 gi|282165458|ref|YP_003357843.1| - 1.3e-28 98.7 0.6 2.1e-28 98.1 0.6 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|282165458|ref|YP_003357843.1| - 4.1e-06 26.2 2.1 7.5e-06 25.4 2.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.7 gi|282165458|ref|YP_003357843.1| - 0.00025 21.0 0.1 0.00048 20.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 gi|282165458|ref|YP_003357843.1| - 0.0012 18.3 0.2 0.0019 17.7 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|282165458|ref|YP_003357843.1| - 0.0053 16.4 0.1 0.0083 15.8 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|282165458|ref|YP_003357843.1| - 0.0066 16.5 0.8 0.014 15.5 0.5 1.8 1 1 1 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|282165458|ref|YP_003357843.1| - 0.009 16.3 0.9 0.014 15.7 0.9 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|282165458|ref|YP_003357843.1| - 0.014 15.2 2.5 0.036 13.9 2.5 1.7 1 1 0 1 1 1 0 Homeodomain-like domain RepB PF07506.11 gi|282165458|ref|YP_003357843.1| - 0.018 15.1 0.1 0.025 14.7 0.1 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein Cation_ATPase_N PF00690.26 gi|282165458|ref|YP_003357843.1| - 0.023 14.4 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 Cation transporter/ATPase, N-terminus HTH_38 PF13936.6 gi|282165458|ref|YP_003357843.1| - 0.027 14.2 0.5 0.06 13.1 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_37 PF13744.6 gi|282165458|ref|YP_003357843.1| - 0.042 13.8 0.1 0.08 12.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|282165458|ref|YP_003357843.1| - 0.066 13.1 0.2 0.11 12.4 0.2 1.3 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.6 gi|282165458|ref|YP_003357843.1| - 0.17 12.0 0.9 0.33 11.1 0.7 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain DUF1786 PF08735.10 gi|282165459|ref|YP_003357844.1| - 1.3e-77 260.6 0.2 1.5e-77 260.3 0.2 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) Transglut_core PF01841.19 gi|282165460|ref|YP_003357845.1| - 0.0092 16.4 0.1 0.015 15.7 0.1 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily MFS_1 PF07690.16 gi|282165461|ref|YP_003357846.1| - 1.3e-45 155.9 50.6 8.2e-29 100.6 23.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|282165461|ref|YP_003357846.1| - 6.9e-17 61.4 31.7 3.3e-09 36.1 8.7 2.9 1 1 2 3 3 3 3 MFS_1 like family Sugar_tr PF00083.24 gi|282165461|ref|YP_003357846.1| - 1e-08 34.5 38.8 8e-06 25.0 11.0 3.3 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_3 PF05977.13 gi|282165461|ref|YP_003357846.1| - 2.3e-08 32.9 23.9 5.1e-08 31.8 23.9 1.5 1 1 0 1 1 1 1 Transmembrane secretion effector CarboxypepD_reg PF13620.6 gi|282165462|ref|YP_003357847.1| - 8.2e-10 38.8 0.9 5.9e-09 36.1 0.9 2.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|282165462|ref|YP_003357847.1| - 0.00018 21.4 0.2 0.00049 20.0 0.1 1.7 1 1 1 2 2 2 1 CarboxypepD_reg-like domain fn3_3 PF14686.6 gi|282165462|ref|YP_003357847.1| - 0.021 14.6 0.6 0.34 10.7 0.2 2.9 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II SdrD_B PF17210.3 gi|282165462|ref|YP_003357847.1| - 0.024 14.8 0.3 0.046 14.0 0.3 1.5 1 0 0 1 1 1 0 SdrD B-like domain CxxCxxCC PF03692.15 gi|282165463|ref|YP_003357848.1| - 3e-06 27.8 2.2 4.1e-06 27.4 2.2 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain ODV-E18 PF10717.9 gi|282165464|ref|YP_003357849.1| - 0.043 13.7 4.1 0.097 12.6 4.1 1.5 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DUF4366 PF14283.6 gi|282165465|ref|YP_003357850.1| - 0.015 15.3 0.1 0.12 12.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) BclA_C PF18573.1 gi|282165465|ref|YP_003357850.1| - 0.82 9.6 7.5 0.043 13.7 2.2 1.6 2 0 0 2 2 2 0 BclA C-terminal domain Calx-beta PF03160.14 gi|282165466|ref|YP_003357851.1| - 7.9e-116 379.0 14.3 6.5e-26 90.4 0.3 5.4 5 0 0 5 5 5 5 Calx-beta domain DUF4843 PF16132.5 gi|282165466|ref|YP_003357851.1| - 0.00074 19.1 0.0 1.5 8.3 0.0 4.3 5 0 0 5 5 5 1 Domain of unknown function (DUF4843) DP-EP PF08985.11 gi|282165466|ref|YP_003357851.1| - 0.16 12.2 6.2 1.4 9.1 0.0 4.3 5 0 0 5 5 5 0 DP-EP family Phage-tail_3 PF13550.6 gi|282165466|ref|YP_003357851.1| - 0.42 10.4 5.8 35 4.2 0.1 3.9 5 0 0 5 5 5 0 Putative phage tail protein Cadherin_5 PF17892.1 gi|282165466|ref|YP_003357851.1| - 1.1 9.3 21.6 3.1 7.9 1.0 5.1 5 0 0 5 5 5 0 Cadherin-like domain CBM_X2 PF03442.14 gi|282165466|ref|YP_003357851.1| - 1.9 8.7 6.0 2.3 8.4 0.1 3.8 4 0 0 4 4 4 0 Carbohydrate binding domain X2 MetallophosN PF16371.5 gi|282165467|ref|YP_003357852.1| - 0.00073 19.7 2.7 0.0014 18.9 2.7 1.5 1 0 0 1 1 1 1 N terminal of Calcineurin-like phosphoesterase DUF4366 PF14283.6 gi|282165467|ref|YP_003357852.1| - 0.0028 17.7 0.1 0.064 13.3 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4366) CarbopepD_reg_2 PF13715.6 gi|282165467|ref|YP_003357852.1| - 0.011 15.7 3.5 0.016 15.2 3.5 1.4 1 0 0 1 1 1 0 CarboxypepD_reg-like domain ComP_DUS PF16732.5 gi|282165467|ref|YP_003357852.1| - 0.049 14.5 0.8 0.049 14.5 0.8 2.2 1 1 1 2 2 2 0 Type IV minor pilin ComP, DNA uptake sequence receptor DUF4381 PF14316.6 gi|282165467|ref|YP_003357852.1| - 0.12 12.6 1.5 0.21 11.8 1.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) DUF4131 PF13567.6 gi|282165467|ref|YP_003357852.1| - 0.44 10.2 3.2 3.2 7.4 1.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Calx-beta PF03160.14 gi|282165468|ref|YP_003357853.1| - 3e-32 110.8 1.4 7.7e-18 64.5 0.8 2.6 2 0 0 2 2 2 2 Calx-beta domain SWM_repeat PF13753.6 gi|282165468|ref|YP_003357853.1| - 0.33 11.1 9.4 0.21 11.8 0.6 4.2 4 0 0 4 4 4 0 Putative flagellar system-associated repeat PBP_like PF12727.7 gi|282165469|ref|YP_003357854.1| - 1.7e-57 193.7 0.0 3e-57 192.9 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|282165469|ref|YP_003357854.1| - 6.5e-44 149.5 2.6 2.6e-43 147.5 2.8 1.9 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|282165469|ref|YP_003357854.1| - 3.5e-23 81.9 0.1 6.6e-23 81.0 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|282165469|ref|YP_003357854.1| - 5.8e-11 42.4 1.7 9.3e-11 41.8 0.1 2.3 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|282165469|ref|YP_003357854.1| - 5.7e-05 23.0 0.0 0.00026 20.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|282165469|ref|YP_003357854.1| - 0.0094 15.3 0.0 1.1 8.5 0.0 3.4 2 1 1 3 3 3 1 LysR substrate binding domain Phosphonate-bd PF12974.7 gi|282165469|ref|YP_003357854.1| - 0.019 14.6 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like_2 PF12849.7 gi|282165469|ref|YP_003357854.1| - 0.024 14.3 0.1 0.61 9.7 0.1 2.4 1 1 0 1 1 1 0 PBP superfamily domain MoeA_N PF03453.17 gi|282165470|ref|YP_003357855.1| - 2.1e-44 151.0 0.3 7e-44 149.3 0.1 1.9 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|282165470|ref|YP_003357855.1| - 4.6e-23 81.5 0.0 9.1e-23 80.5 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|282165470|ref|YP_003357855.1| - 6.5e-18 64.7 2.0 2.8e-17 62.6 0.0 2.9 4 0 0 4 4 4 1 MoeA C-terminal region (domain IV) DUF4366 PF14283.6 gi|282165471|ref|YP_003357856.1| - 0.09 12.8 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) TALPID3 PF15324.6 gi|282165471|ref|YP_003357856.1| - 0.99 7.0 5.6 1.3 6.6 5.6 1.1 1 0 0 1 1 1 0 Hedgehog signalling target Peptidase_S8 PF00082.22 gi|282165472|ref|YP_003357857.1| - 2.8e-59 200.8 12.5 2.8e-59 200.8 12.5 2.4 3 0 0 3 3 3 1 Subtilase family Calx-beta PF03160.14 gi|282165472|ref|YP_003357857.1| - 5.2e-57 190.2 3.9 9.6e-21 73.8 0.0 3.6 3 0 0 3 3 3 3 Calx-beta domain Inhibitor_I9 PF05922.16 gi|282165472|ref|YP_003357857.1| - 2.7e-09 37.6 0.1 7.8e-09 36.1 0.1 1.8 1 0 0 1 1 1 1 Peptidase inhibitor I9 DUF4843 PF16132.5 gi|282165472|ref|YP_003357857.1| - 0.0023 17.5 0.5 2.3 7.8 0.2 2.7 3 0 0 3 3 3 2 Domain of unknown function (DUF4843) Tk-SP_N-pro PF18237.1 gi|282165472|ref|YP_003357857.1| - 0.026 14.6 0.0 0.058 13.5 0.0 1.5 1 0 0 1 1 1 0 Tk-SP N-propeptide domain DUF3739 PF12545.8 gi|282165472|ref|YP_003357857.1| - 0.027 15.0 4.3 1.8 9.0 0.3 3.5 3 0 0 3 3 3 0 Filamentous haemagglutinin family outer membrane protein Cadherin_5 PF17892.1 gi|282165472|ref|YP_003357857.1| - 0.14 12.1 0.1 0.14 12.1 0.1 4.1 4 1 1 5 5 5 0 Cadherin-like domain BPD_transp_1 PF00528.22 gi|282165474|ref|YP_003357859.1| - 1.1e-12 48.1 18.2 1.8e-12 47.4 18.2 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|282165475|ref|YP_003357860.1| - 2.4e-31 109.1 0.0 3.5e-31 108.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282165475|ref|YP_003357860.1| - 3e-10 40.4 0.0 0.00033 20.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282165475|ref|YP_003357860.1| - 7.2e-08 32.1 0.0 0.00021 20.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|282165475|ref|YP_003357860.1| - 6.8e-05 22.7 0.1 0.042 13.6 0.0 2.2 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|282165475|ref|YP_003357860.1| - 0.0003 21.2 0.1 0.00044 20.7 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|282165475|ref|YP_003357860.1| - 0.0013 18.5 0.0 0.051 13.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|282165475|ref|YP_003357860.1| - 0.0015 18.8 0.0 0.0036 17.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|282165475|ref|YP_003357860.1| - 0.0016 18.2 0.0 1.9 8.2 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.6 gi|282165475|ref|YP_003357860.1| - 0.0051 16.4 0.0 2.6 7.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain cobW PF02492.19 gi|282165475|ref|YP_003357860.1| - 0.0093 15.6 0.1 0.038 13.6 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|282165475|ref|YP_003357860.1| - 0.012 15.6 0.2 0.034 14.1 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_29 PF13555.6 gi|282165475|ref|YP_003357860.1| - 0.017 14.9 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PRK PF00485.18 gi|282165475|ref|YP_003357860.1| - 0.02 14.7 0.4 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_13 PF13166.6 gi|282165475|ref|YP_003357860.1| - 0.023 13.4 0.0 1.1 7.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|282165475|ref|YP_003357860.1| - 0.026 15.1 0.1 0.074 13.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|282165475|ref|YP_003357860.1| - 0.027 14.4 0.4 0.15 12.0 0.4 2.1 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA PF00004.29 gi|282165475|ref|YP_003357860.1| - 0.04 14.4 0.2 0.61 10.5 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|282165475|ref|YP_003357860.1| - 0.041 14.1 0.1 0.37 11.0 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|282165475|ref|YP_003357860.1| - 0.047 14.2 0.0 0.15 12.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|282165475|ref|YP_003357860.1| - 0.053 13.7 0.5 0.18 12.0 0.5 1.9 1 1 0 1 1 1 0 AAA domain DUF503 PF04456.12 gi|282165475|ref|YP_003357860.1| - 0.062 13.2 0.2 0.16 11.9 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF503) AAA_28 PF13521.6 gi|282165475|ref|YP_003357860.1| - 0.075 13.3 0.0 0.17 12.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|282165475|ref|YP_003357860.1| - 0.077 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain WHEP-TRS PF00458.20 gi|282165475|ref|YP_003357860.1| - 0.09 12.9 0.2 0.19 11.9 0.2 1.4 1 0 0 1 1 1 0 WHEP-TRS domain NACHT PF05729.12 gi|282165475|ref|YP_003357860.1| - 0.093 12.6 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Roc PF08477.13 gi|282165475|ref|YP_003357860.1| - 0.1 12.8 0.0 1.2 9.4 0.0 2.4 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1 PF01926.23 gi|282165475|ref|YP_003357860.1| - 0.24 11.5 1.1 3.1 7.9 1.1 2.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase Peptidase_M10 PF00413.24 gi|282165476|ref|YP_003357861.1| - 3.7e-06 26.9 0.0 4.6e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.6 gi|282165476|ref|YP_003357861.1| - 0.00031 20.9 0.0 0.00036 20.7 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 DUF2268 PF10026.9 gi|282165476|ref|YP_003357861.1| - 0.00039 20.0 0.0 0.00052 19.6 0.0 1.2 1 0 0 1 1 1 1 Predicted Zn-dependent protease (DUF2268) Peptidase_M54 PF07998.11 gi|282165476|ref|YP_003357861.1| - 0.0031 17.5 0.0 0.005 16.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_3 PF13582.6 gi|282165476|ref|YP_003357861.1| - 0.0031 18.0 0.0 0.0047 17.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|282165476|ref|YP_003357861.1| - 0.009 15.7 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin PF01421.19 gi|282165476|ref|YP_003357861.1| - 0.032 14.1 0.0 0.042 13.7 0.0 1.1 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease Peptidase_M43 PF05572.13 gi|282165476|ref|YP_003357861.1| - 0.045 13.7 0.0 0.076 12.9 0.0 1.4 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Astacin PF01400.24 gi|282165476|ref|YP_003357861.1| - 0.13 11.8 0.1 0.22 11.1 0.1 1.2 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) Metallopep PF12044.8 gi|282165476|ref|YP_003357861.1| - 0.21 10.2 0.3 0.3 9.7 0.3 1.1 1 0 0 1 1 1 0 Putative peptidase family E1-E2_ATPase PF00122.20 gi|282165477|ref|YP_003357862.1| - 6.6e-51 172.4 0.3 6.6e-51 172.4 0.3 2.6 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|282165477|ref|YP_003357862.1| - 8e-29 100.6 6.6 8e-29 100.6 6.6 2.0 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|282165477|ref|YP_003357862.1| - 1e-27 97.8 1.1 1.3e-27 97.4 0.4 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|282165477|ref|YP_003357862.1| - 1.5e-13 50.2 1.1 1.7e-12 46.8 0.0 2.5 1 1 1 2 2 2 1 Cation transporter/ATPase, N-terminus HAD PF12710.7 gi|282165477|ref|YP_003357862.1| - 0.00014 22.3 0.7 0.039 14.4 0.1 2.8 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|282165477|ref|YP_003357862.1| - 0.00033 20.5 0.3 0.031 14.0 0.3 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF4539 PF15072.6 gi|282165477|ref|YP_003357862.1| - 0.17 11.9 0.2 0.67 10.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4539) FlpD PF02662.16 gi|282165477|ref|YP_003357862.1| - 0.2 11.7 0.0 6.8 6.7 0.0 2.4 1 1 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit Plasmid_stab_B PF10784.9 gi|282165477|ref|YP_003357862.1| - 0.33 10.8 1.3 1.6 8.6 0.1 2.7 3 0 0 3 3 3 0 Plasmid stability protein HMGL-like PF00682.19 gi|282165478|ref|YP_003357863.1| - 9.7e-58 195.8 6.6 9.7e-58 195.8 6.6 1.9 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|282165478|ref|YP_003357863.1| - 5.3e-32 110.5 2.2 1.2e-31 109.3 2.2 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Bac_luciferase PF00296.20 gi|282165478|ref|YP_003357863.1| - 0.0035 16.8 0.1 0.01 15.3 0.1 1.7 1 0 0 1 1 1 1 Luciferase-like monooxygenase Phage_holin_6_1 PF09682.10 gi|282165478|ref|YP_003357863.1| - 0.15 12.5 1.2 1 9.8 0.0 2.8 3 0 0 3 3 3 0 Bacteriophage holin of superfamily 6 (Holin_LLH) NYN PF01936.18 gi|282165479|ref|YP_003357864.1| - 7.1e-23 81.7 0.1 9.5e-23 81.3 0.1 1.1 1 0 0 1 1 1 1 NYN domain DUF4479 PF14794.6 gi|282165479|ref|YP_003357864.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) DHH PF01368.20 gi|282165480|ref|YP_003357865.1| - 4.8e-16 58.8 0.1 8.2e-16 58.1 0.1 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|282165480|ref|YP_003357865.1| - 1.8e-09 38.1 6.3 5.2e-09 36.6 4.9 2.1 2 0 0 2 2 2 1 DHHA1 domain Rod_cone_degen PF15201.6 gi|282165480|ref|YP_003357865.1| - 0.12 12.5 0.1 2.6 8.2 0.1 2.3 2 0 0 2 2 2 0 Progressive rod-cone degeneration His_biosynth PF00977.21 gi|282165481|ref|YP_003357866.1| - 6.4e-22 78.1 0.3 7.8e-22 77.9 0.3 1.1 1 0 0 1 1 1 1 Histidine biosynthesis protein PRAI PF00697.22 gi|282165481|ref|YP_003357866.1| - 0.075 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DsbD PF02683.15 gi|282165482|ref|YP_003357867.1| - 6.4e-14 52.4 13.1 1e-13 51.7 13.1 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|282165482|ref|YP_003357867.1| - 2.3e-10 40.8 16.6 3.9e-10 40.0 16.6 1.4 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region SfLAP PF11139.8 gi|282165482|ref|YP_003357867.1| - 1e-06 28.4 12.3 7.1e-06 25.6 11.6 2.6 1 1 0 1 1 1 1 Sap, sulfolipid-1-addressing protein Thioredoxin_3 PF13192.6 gi|282165482|ref|YP_003357867.1| - 0.0065 16.5 0.2 0.035 14.1 0.0 2.3 2 1 0 2 2 2 1 Thioredoxin domain ABA_WDS PF02496.16 gi|282165482|ref|YP_003357867.1| - 0.1 13.1 0.0 0.29 11.6 0.0 1.7 1 0 0 1 1 1 0 ABA/WDS induced protein MLANA PF14991.6 gi|282165483|ref|YP_003357868.1| - 0.092 13.0 0.1 0.095 13.0 0.1 1.1 1 0 0 1 1 1 0 Protein melan-A HTH_5 PF01022.20 gi|282165484|ref|YP_003357869.1| - 4.6e-19 68.0 0.2 3.4e-13 49.2 0.0 3.2 2 1 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|282165484|ref|YP_003357869.1| - 1.6e-13 50.5 0.1 7.1e-09 35.6 0.0 2.7 3 0 0 3 3 3 2 Helix-turn-helix domain TrmB PF01978.19 gi|282165484|ref|YP_003357869.1| - 2.5e-10 40.1 0.2 0.0011 18.8 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|282165484|ref|YP_003357869.1| - 2.5e-08 33.7 0.0 0.00091 19.1 0.0 2.5 2 0 0 2 2 2 2 MarR family MarR PF01047.22 gi|282165484|ref|YP_003357869.1| - 5.7e-07 29.4 0.0 0.00021 21.2 0.0 2.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|282165484|ref|YP_003357869.1| - 1.1e-06 28.1 2.6 0.0022 17.5 0.3 3.8 3 1 0 3 3 3 2 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|282165484|ref|YP_003357869.1| - 3.4e-06 27.3 0.0 0.14 12.5 0.0 2.6 2 0 0 2 2 2 2 Transcriptional regulator HTH_11 PF08279.12 gi|282165484|ref|YP_003357869.1| - 8.7e-06 25.6 0.0 0.012 15.6 0.0 2.9 2 1 1 3 3 3 1 HTH domain DprA_WH PF17782.1 gi|282165484|ref|YP_003357869.1| - 1.1e-05 25.4 0.0 0.0036 17.4 0.0 2.8 2 0 0 2 2 2 1 DprA winged helix domain Sigma70_r4_2 PF08281.12 gi|282165484|ref|YP_003357869.1| - 2.8e-05 23.7 1.4 0.18 11.5 0.0 4.1 4 0 0 4 4 4 1 Sigma-70, region 4 HTH_27 PF13463.6 gi|282165484|ref|YP_003357869.1| - 3.3e-05 24.3 0.4 0.49 10.9 0.0 3.0 3 1 1 4 4 3 2 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|282165484|ref|YP_003357869.1| - 9e-05 22.2 0.0 0.17 11.7 0.0 2.7 2 0 0 2 2 2 2 LexA DNA binding domain Fe_dep_repress PF01325.19 gi|282165484|ref|YP_003357869.1| - 0.00027 21.0 0.0 0.048 13.9 0.0 2.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain PadR PF03551.14 gi|282165484|ref|YP_003357869.1| - 0.0008 19.3 0.1 0.028 14.4 0.1 3.0 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family DUF2250 PF10007.9 gi|282165484|ref|YP_003357869.1| - 0.0017 18.4 0.1 0.75 9.9 0.0 2.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.17 gi|282165484|ref|YP_003357869.1| - 0.0022 17.8 0.4 0.18 11.7 0.1 2.3 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_10 PF04967.12 gi|282165484|ref|YP_003357869.1| - 0.0027 17.5 0.0 0.14 12.0 0.0 2.6 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|282165484|ref|YP_003357869.1| - 0.0031 17.0 0.1 1.2 8.7 0.0 3.0 3 0 0 3 3 3 1 Sigma-70, region 4 RP-C PF03428.13 gi|282165484|ref|YP_003357869.1| - 0.0054 16.4 0.2 0.96 9.1 0.2 2.8 1 1 1 2 2 2 1 Replication protein C N-terminal domain IF2_N PF04760.15 gi|282165484|ref|YP_003357869.1| - 0.0059 16.4 0.4 0.19 11.6 0.0 2.9 3 1 0 3 3 2 1 Translation initiation factor IF-2, N-terminal region HTH_34 PF13601.6 gi|282165484|ref|YP_003357869.1| - 0.0064 16.7 0.0 1.1 9.5 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|282165484|ref|YP_003357869.1| - 0.0069 16.3 0.0 3.9 7.5 0.0 2.6 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain Sulfolobus_pRN PF05584.11 gi|282165484|ref|YP_003357869.1| - 0.0073 16.3 0.1 0.42 10.7 0.0 2.3 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein HTH_9 PF08221.11 gi|282165484|ref|YP_003357869.1| - 0.0093 16.0 0.0 0.21 11.7 0.0 2.5 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|282165484|ref|YP_003357869.1| - 0.015 15.1 0.0 6.5 6.7 0.0 2.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DDRGK PF09756.9 gi|282165484|ref|YP_003357869.1| - 0.02 14.5 0.4 0.25 10.9 0.0 2.2 2 1 0 2 2 2 0 DDRGK domain FeoC PF09012.10 gi|282165484|ref|YP_003357869.1| - 0.025 14.6 0.0 0.55 10.3 0.0 2.6 3 0 0 3 3 3 0 FeoC like transcriptional regulator ArsR PF09824.9 gi|282165484|ref|YP_003357869.1| - 0.044 13.4 0.0 1.9 8.0 0.0 2.5 2 1 1 3 3 3 0 ArsR transcriptional regulator EAP30 PF04157.16 gi|282165484|ref|YP_003357869.1| - 0.053 12.8 0.3 1.4 8.2 0.2 2.6 2 1 1 3 3 3 0 EAP30/Vps36 family HxlR PF01638.17 gi|282165484|ref|YP_003357869.1| - 0.086 12.7 0.0 7.9 6.4 0.0 2.4 2 0 0 2 2 2 0 HxlR-like helix-turn-helix GntR PF00392.21 gi|282165484|ref|YP_003357869.1| - 0.09 12.4 0.2 8.2 6.2 0.0 3.4 3 1 0 3 3 3 0 Bacterial regulatory proteins, gntR family GerE PF00196.19 gi|282165484|ref|YP_003357869.1| - 0.1 12.2 0.0 15 5.2 0.0 2.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_CodY PF08222.11 gi|282165484|ref|YP_003357869.1| - 0.11 12.0 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain Mst1_SARAH PF11629.8 gi|282165484|ref|YP_003357869.1| - 0.73 10.0 0.0 0.73 10.0 0.0 2.5 3 0 0 3 3 3 0 C terminal SARAH domain of Mst1 AAA PF00004.29 gi|282165485|ref|YP_003357870.1| - 5.1e-99 327.8 0.0 5e-49 166.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|282165485|ref|YP_003357870.1| - 2.7e-32 110.3 0.8 5.1e-15 55.0 0.1 3.1 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|282165485|ref|YP_003357870.1| - 1.2e-31 108.7 0.1 1.1e-30 105.6 0.4 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|282165485|ref|YP_003357870.1| - 1.6e-18 67.4 0.1 2.3e-08 34.4 0.0 3.7 4 0 0 4 4 3 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|282165485|ref|YP_003357870.1| - 1.2e-16 60.2 0.0 5.7e-16 58.0 0.0 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|282165485|ref|YP_003357870.1| - 1.5e-16 60.6 0.0 6.4e-09 35.8 0.0 3.1 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|282165485|ref|YP_003357870.1| - 7.4e-14 52.5 0.0 3.3e-05 24.3 0.0 3.7 2 1 0 2 2 2 2 AAA ATPase domain TIP49 PF06068.13 gi|282165485|ref|YP_003357870.1| - 2.7e-12 46.6 0.0 1.9e-05 24.1 0.0 2.7 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|282165485|ref|YP_003357870.1| - 5.4e-11 42.9 0.7 0.0019 18.5 0.0 4.1 2 2 1 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|282165485|ref|YP_003357870.1| - 6e-11 42.7 0.1 9.6e-05 22.6 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|282165485|ref|YP_003357870.1| - 1.8e-10 41.0 0.0 0.00015 21.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|282165485|ref|YP_003357870.1| - 9e-10 38.7 1.4 0.00036 20.5 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|282165485|ref|YP_003357870.1| - 2.4e-08 34.6 0.0 0.0068 16.9 0.0 2.9 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|282165485|ref|YP_003357870.1| - 1.6e-07 31.3 0.0 0.015 15.0 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|282165485|ref|YP_003357870.1| - 2.1e-07 30.5 0.1 0.01 15.2 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|282165485|ref|YP_003357870.1| - 4e-07 30.0 1.0 0.013 15.2 0.0 3.5 4 0 0 4 4 3 2 AAA domain RNA_helicase PF00910.22 gi|282165485|ref|YP_003357870.1| - 5.4e-07 30.0 0.0 0.05 14.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Vps4_C PF09336.10 gi|282165485|ref|YP_003357870.1| - 7.1e-07 29.1 0.2 0.0038 17.2 0.0 2.9 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_28 PF13521.6 gi|282165485|ref|YP_003357870.1| - 1e-06 29.1 0.6 0.044 14.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_7 PF12775.7 gi|282165485|ref|YP_003357870.1| - 1.7e-06 27.7 0.0 0.016 14.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|282165485|ref|YP_003357870.1| - 1.8e-06 27.8 0.1 0.16 11.7 0.0 3.4 2 2 0 2 2 2 2 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|282165485|ref|YP_003357870.1| - 4.4e-06 26.1 0.7 0.1 11.8 0.0 2.8 3 0 0 3 3 2 2 Zeta toxin AAA_3 PF07726.11 gi|282165485|ref|YP_003357870.1| - 5e-06 26.4 0.0 0.12 12.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|282165485|ref|YP_003357870.1| - 1.5e-05 24.7 3.5 0.65 9.5 0.0 3.8 3 1 0 3 3 3 2 AAA domain ABC_tran PF00005.27 gi|282165485|ref|YP_003357870.1| - 3.4e-05 24.4 0.0 0.29 11.7 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_17 PF13207.6 gi|282165485|ref|YP_003357870.1| - 4.4e-05 23.9 0.0 0.68 10.4 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_19 PF13245.6 gi|282165485|ref|YP_003357870.1| - 6.2e-05 23.4 0.5 0.48 10.7 0.0 3.1 3 0 0 3 3 3 2 AAA domain ATPase PF06745.13 gi|282165485|ref|YP_003357870.1| - 6.5e-05 22.4 2.8 1 8.7 0.0 3.8 3 1 1 4 4 3 2 KaiC DUF2075 PF09848.9 gi|282165485|ref|YP_003357870.1| - 6.9e-05 22.2 0.0 0.3 10.3 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) TsaE PF02367.17 gi|282165485|ref|YP_003357870.1| - 0.0001 22.3 0.0 0.26 11.3 0.0 2.7 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|282165485|ref|YP_003357870.1| - 0.00012 21.6 0.3 0.31 10.4 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein DUF815 PF05673.13 gi|282165485|ref|YP_003357870.1| - 0.00014 21.1 0.0 0.35 10.0 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_11 PF13086.6 gi|282165485|ref|YP_003357870.1| - 0.00015 21.7 0.8 1.3 8.7 0.0 3.1 3 0 0 3 3 3 2 AAA domain Parvo_NS1 PF01057.17 gi|282165485|ref|YP_003357870.1| - 0.00017 20.8 0.1 0.21 10.7 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ATPase_2 PF01637.18 gi|282165485|ref|YP_003357870.1| - 0.00022 21.3 0.0 1.9 8.3 0.0 3.5 2 2 1 3 3 3 2 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|282165485|ref|YP_003357870.1| - 0.00025 21.0 0.2 1 9.3 0.0 3.4 4 0 0 4 4 3 1 NACHT domain AAA_30 PF13604.6 gi|282165485|ref|YP_003357870.1| - 0.00041 20.1 0.2 0.91 9.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|282165485|ref|YP_003357870.1| - 0.00086 18.6 0.0 1.1 8.4 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain Bac_DnaA PF00308.18 gi|282165485|ref|YP_003357870.1| - 0.001 19.0 0.0 1.1 9.1 0.0 2.8 2 1 0 2 2 2 1 Bacterial dnaA protein TniB PF05621.11 gi|282165485|ref|YP_003357870.1| - 0.002 17.6 0.0 0.91 8.9 0.0 3.1 4 0 0 4 4 3 1 Bacterial TniB protein Viral_helicase1 PF01443.18 gi|282165485|ref|YP_003357870.1| - 0.0021 17.9 0.0 0.037 13.8 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Sigma54_activ_2 PF14532.6 gi|282165485|ref|YP_003357870.1| - 0.0029 17.7 0.0 3.2 7.9 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|282165485|ref|YP_003357870.1| - 0.0046 16.9 1.3 6.7 6.6 0.0 3.7 3 2 1 4 4 3 0 NTPase Cytidylate_kin PF02224.18 gi|282165485|ref|YP_003357870.1| - 0.0062 16.3 0.1 1.9 8.2 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase IPT PF01745.16 gi|282165485|ref|YP_003357870.1| - 0.011 15.2 0.3 2.5 7.4 0.1 2.5 2 0 0 2 2 2 0 Isopentenyl transferase Guanylate_kin PF00625.21 gi|282165485|ref|YP_003357870.1| - 0.016 14.9 0.1 4.3 7.0 0.0 3.5 2 1 1 3 3 3 0 Guanylate kinase AAA_29 PF13555.6 gi|282165485|ref|YP_003357870.1| - 0.027 14.2 0.0 9.6 6.0 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|282165485|ref|YP_003357870.1| - 0.028 14.1 0.0 5 6.7 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SSE PF00437.20 gi|282165485|ref|YP_003357870.1| - 0.058 12.5 0.0 3.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein SKI PF01202.22 gi|282165485|ref|YP_003357870.1| - 0.085 13.0 0.5 13 5.9 0.0 2.9 3 0 0 3 3 2 0 Shikimate kinase AFG1_ATPase PF03969.16 gi|282165485|ref|YP_003357870.1| - 0.097 11.5 0.0 4 6.2 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase ResIII PF04851.15 gi|282165485|ref|YP_003357870.1| - 0.11 12.5 0.0 15 5.6 0.0 2.9 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit RE_XcyI PF09571.10 gi|282165485|ref|YP_003357870.1| - 0.16 11.2 0.6 0.31 10.3 0.6 1.3 1 0 0 1 1 1 0 XcyI restriction endonuclease Cytidylate_kin2 PF13189.6 gi|282165485|ref|YP_003357870.1| - 0.3 11.2 3.1 9.7 6.3 0.0 3.0 3 0 0 3 3 2 0 Cytidylate kinase-like family AAA_23 PF13476.6 gi|282165485|ref|YP_003357870.1| - 0.42 11.1 2.5 22 5.4 0.0 3.3 3 0 0 3 3 3 0 AAA domain Hydin_ADK PF17213.3 gi|282165485|ref|YP_003357870.1| - 0.51 10.6 6.6 8 6.7 0.0 3.2 3 0 0 3 3 3 0 Hydin Adenylate kinase-like domain HSP20 PF00011.21 gi|282165486|ref|YP_003357871.1| - 3.5e-12 46.4 1.1 5.5e-11 42.5 1.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|282165486|ref|YP_003357871.1| - 4.4e-10 39.0 0.0 6e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|282165486|ref|YP_003357871.1| - 0.00034 21.6 0.0 0.0006 20.8 0.0 1.4 1 0 0 1 1 1 1 CS domain DUF1614 PF07758.11 gi|282165487|ref|YP_003357872.1| - 1.2e-46 158.8 12.9 1.2e-46 158.8 12.9 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) PRC PF05239.16 gi|282165488|ref|YP_003357873.1| - 4e-10 39.6 0.2 4.3e-10 39.5 0.2 1.0 1 0 0 1 1 1 1 PRC-barrel domain AAA PF00004.29 gi|282165489|ref|YP_003357874.1| - 3e-97 322.1 0.0 1.1e-49 168.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|282165489|ref|YP_003357874.1| - 7.3e-33 112.1 1.3 1.1e-17 63.5 0.3 3.5 3 0 0 3 3 3 2 AAA+ lid domain CDC48_N PF02359.18 gi|282165489|ref|YP_003357874.1| - 3.9e-32 110.3 0.0 2.4e-31 107.7 0.1 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|282165489|ref|YP_003357874.1| - 5.3e-18 64.6 0.0 1.9e-15 56.4 0.0 3.3 2 1 1 3 3 3 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|282165489|ref|YP_003357874.1| - 3.2e-15 56.2 0.0 1.5e-07 31.3 0.0 3.4 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|282165489|ref|YP_003357874.1| - 6.2e-13 49.5 1.1 3.9e-05 24.1 0.1 3.9 2 2 0 2 2 2 2 AAA ATPase domain TIP49 PF06068.13 gi|282165489|ref|YP_003357874.1| - 7.3e-12 45.1 0.5 0.00059 19.1 0.0 3.8 4 0 0 4 4 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|282165489|ref|YP_003357874.1| - 1.4e-11 44.8 0.5 0.0023 18.2 0.0 4.3 2 2 1 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|282165489|ref|YP_003357874.1| - 8.5e-11 42.2 0.0 5.5e-05 23.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_2 PF07724.14 gi|282165489|ref|YP_003357874.1| - 1.2e-10 41.8 0.0 4e-05 23.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|282165489|ref|YP_003357874.1| - 2.8e-10 40.3 0.5 0.00013 22.0 0.1 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|282165489|ref|YP_003357874.1| - 2.5e-08 34.5 0.0 0.0079 16.7 0.0 3.2 3 0 0 3 3 3 2 AAA domain IstB_IS21 PF01695.17 gi|282165489|ref|YP_003357874.1| - 7.6e-08 32.3 0.0 0.0096 15.7 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|282165489|ref|YP_003357874.1| - 1.5e-07 31.8 0.0 0.022 15.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|282165489|ref|YP_003357874.1| - 2.2e-07 31.0 0.0 0.0097 15.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|282165489|ref|YP_003357874.1| - 8.4e-07 28.9 0.8 0.39 10.7 0.0 4.2 4 0 0 4 4 4 2 Vps4 C terminal oligomerisation domain Mg_chelatase PF01078.21 gi|282165489|ref|YP_003357874.1| - 2.2e-06 27.2 0.2 0.088 12.2 0.1 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|282165489|ref|YP_003357874.1| - 2.3e-06 27.6 0.0 0.038 14.0 0.0 2.8 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|282165489|ref|YP_003357874.1| - 3.1e-06 27.5 0.0 0.14 12.6 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|282165489|ref|YP_003357874.1| - 1.8e-05 24.3 0.0 0.13 11.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region ATPase PF06745.13 gi|282165489|ref|YP_003357874.1| - 2.4e-05 23.8 0.4 0.69 9.2 0.0 3.6 4 0 0 4 4 4 2 KaiC AAA_25 PF13481.6 gi|282165489|ref|YP_003357874.1| - 3.6e-05 23.4 4.4 0.18 11.3 0.1 3.7 2 2 1 3 3 3 2 AAA domain Sigma54_activat PF00158.26 gi|282165489|ref|YP_003357874.1| - 4.9e-05 23.1 0.0 0.52 10.0 0.0 2.9 3 0 0 3 3 2 2 Sigma-54 interaction domain PhoH PF02562.16 gi|282165489|ref|YP_003357874.1| - 5.1e-05 22.8 0.0 0.45 9.9 0.0 2.9 2 0 0 2 2 2 2 PhoH-like protein DUF815 PF05673.13 gi|282165489|ref|YP_003357874.1| - 6.1e-05 22.3 0.0 0.35 10.0 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|282165489|ref|YP_003357874.1| - 6.4e-05 23.5 0.0 0.27 11.8 0.0 2.9 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.6 gi|282165489|ref|YP_003357874.1| - 6.8e-05 22.7 0.0 0.13 11.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|282165489|ref|YP_003357874.1| - 7.7e-05 22.6 0.0 0.33 10.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|282165489|ref|YP_003357874.1| - 9.6e-05 21.7 0.1 0.27 10.5 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin NACHT PF05729.12 gi|282165489|ref|YP_003357874.1| - 0.0001 22.3 0.2 0.73 9.7 0.1 3.3 4 0 0 4 4 2 2 NACHT domain ATPase_2 PF01637.18 gi|282165489|ref|YP_003357874.1| - 0.00013 22.0 0.0 0.73 9.7 0.0 3.6 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|282165489|ref|YP_003357874.1| - 0.00014 21.2 0.0 0.24 10.6 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|282165489|ref|YP_003357874.1| - 0.00017 21.3 0.1 0.64 9.7 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_17 PF13207.6 gi|282165489|ref|YP_003357874.1| - 0.00022 21.7 0.0 3.6 8.0 0.0 3.7 3 0 0 3 3 3 0 AAA domain AAA_11 PF13086.6 gi|282165489|ref|YP_003357874.1| - 0.00025 20.9 0.0 0.47 10.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|282165489|ref|YP_003357874.1| - 0.00028 20.2 0.0 0.71 9.0 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain Parvo_NS1 PF01057.17 gi|282165489|ref|YP_003357874.1| - 0.00069 18.8 0.0 0.89 8.6 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_19 PF13245.6 gi|282165489|ref|YP_003357874.1| - 0.0012 19.2 0.4 3.4 8.0 0.1 3.1 3 1 0 3 3 2 0 AAA domain Viral_helicase1 PF01443.18 gi|282165489|ref|YP_003357874.1| - 0.0013 18.5 0.0 0.14 11.8 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 gi|282165489|ref|YP_003357874.1| - 0.0027 17.6 0.3 2.5 8.0 0.0 3.3 3 1 1 4 4 3 1 NTPase Cytidylate_kin PF02224.18 gi|282165489|ref|YP_003357874.1| - 0.0037 17.0 0.0 2.1 8.0 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase Cytidylate_kin2 PF13189.6 gi|282165489|ref|YP_003357874.1| - 0.0056 16.8 0.1 1.8 8.6 0.0 3.1 3 0 0 3 3 3 1 Cytidylate kinase-like family Sigma54_activ_2 PF14532.6 gi|282165489|ref|YP_003357874.1| - 0.011 15.9 0.0 7.6 6.7 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain Hydin_ADK PF17213.3 gi|282165489|ref|YP_003357874.1| - 0.02 15.1 0.0 5 7.4 0.0 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Bac_DnaA PF00308.18 gi|282165489|ref|YP_003357874.1| - 0.021 14.6 0.0 7.5 6.3 0.0 2.7 2 0 0 2 2 2 0 Bacterial dnaA protein Guanylate_kin PF00625.21 gi|282165489|ref|YP_003357874.1| - 0.026 14.2 0.2 42 3.7 0.0 4.3 3 1 1 4 4 4 0 Guanylate kinase ResIII PF04851.15 gi|282165489|ref|YP_003357874.1| - 0.035 14.1 0.0 9.1 6.3 0.0 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|282165489|ref|YP_003357874.1| - 0.042 12.7 0.0 3.4 6.5 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Torsin PF06309.11 gi|282165489|ref|YP_003357874.1| - 0.042 14.0 0.0 9.7 6.3 0.0 2.5 2 0 0 2 2 2 0 Torsin RRM_DME PF15628.6 gi|282165489|ref|YP_003357874.1| - 0.073 13.3 0.0 0.2 11.9 0.0 1.7 1 0 0 1 1 1 0 RRM in Demeter T2SSE PF00437.20 gi|282165489|ref|YP_003357874.1| - 0.091 11.8 0.0 8.8 5.3 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein CPT PF07931.12 gi|282165489|ref|YP_003357874.1| - 0.098 12.5 0.0 24 4.7 0.0 2.8 3 0 0 3 3 2 0 Chloramphenicol phosphotransferase-like protein SKI PF01202.22 gi|282165489|ref|YP_003357874.1| - 0.14 12.2 0.1 22 5.1 0.0 2.9 3 0 0 3 3 2 0 Shikimate kinase AAA_29 PF13555.6 gi|282165489|ref|YP_003357874.1| - 0.15 11.8 0.0 23 4.8 0.0 3.2 3 0 0 3 3 3 0 P-loop containing region of AAA domain DUF111 PF01969.17 gi|282165490|ref|YP_003357875.1| - 3.4e-75 253.5 0.3 4.5e-75 253.1 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF111 HTH_50 PF18024.1 gi|282165490|ref|YP_003357875.1| - 0.07 12.7 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain PMT_2 PF13231.6 gi|282165491|ref|YP_003357876.1| - 1.2e-09 38.6 18.6 1.2e-09 38.6 18.6 2.9 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2723 PF11028.8 gi|282165491|ref|YP_003357876.1| - 5.5 6.9 20.1 0.07 13.0 5.8 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF2723) PMT_2 PF13231.6 gi|282165492|ref|YP_003357877.1| - 5e-06 26.8 14.0 5e-06 26.8 14.0 2.7 2 1 1 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT_2 PF13231.6 gi|282165493|ref|YP_003357878.1| - 1.5e-08 35.0 16.7 1.5e-08 35.0 16.7 2.9 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Mannosyl_trans4 PF15971.5 gi|282165493|ref|YP_003357878.1| - 2.7e-07 30.6 4.4 2.7e-07 30.6 4.4 2.2 2 1 0 2 2 2 1 DolP-mannose mannosyltransferase ALG3 PF05208.13 gi|282165493|ref|YP_003357878.1| - 0.0029 17.1 1.0 0.0051 16.3 1.0 1.5 1 0 0 1 1 1 1 ALG3 protein PIG-U PF06728.13 gi|282165493|ref|YP_003357878.1| - 0.0044 16.1 7.5 0.0063 15.6 2.9 2.2 2 0 0 2 2 2 1 GPI transamidase subunit PIG-U Alg6_Alg8 PF03155.15 gi|282165493|ref|YP_003357878.1| - 0.13 11.2 8.1 0.043 12.8 2.2 2.2 2 0 0 2 2 2 0 ALG6, ALG8 glycosyltransferase family Tlr3_TMD PF17968.1 gi|282165493|ref|YP_003357878.1| - 0.27 11.4 4.1 20 5.5 0.8 3.4 2 0 0 2 2 2 0 Toll-like receptor 3 trans-membrane domain PMT PF02366.18 gi|282165493|ref|YP_003357878.1| - 2.6 7.6 20.5 0.018 14.6 9.1 3.0 2 1 0 3 3 3 0 Dolichyl-phosphate-mannose-protein mannosyltransferase NERD PF08378.11 gi|282165494|ref|YP_003357879.1| - 4.1e-16 59.4 0.2 2e-15 57.2 0.0 2.1 2 1 0 2 2 2 1 Nuclease-related domain DpnII PF04556.12 gi|282165494|ref|YP_003357879.1| - 0.011 15.1 1.4 0.016 14.5 1.4 1.1 1 0 0 1 1 1 0 DpnII restriction endonuclease DEAD_assoc PF08494.11 gi|282165494|ref|YP_003357879.1| - 0.015 15.1 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 DEAD/H associated DUF460 PF04312.13 gi|282165495|ref|YP_003357880.1| - 0.0087 15.8 0.3 0.02 14.6 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF460) VbhA PF18495.1 gi|282165495|ref|YP_003357880.1| - 0.095 12.6 0.3 0.36 10.7 0.2 2.0 2 0 0 2 2 2 0 Antitoxin VbhA Rad51 PF08423.11 gi|282165496|ref|YP_003357881.1| - 1.4e-32 113.0 1.1 1.6e-32 112.8 1.1 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|282165496|ref|YP_003357881.1| - 6.7e-12 45.4 0.7 8.5e-12 45.1 0.7 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.12 gi|282165496|ref|YP_003357881.1| - 1.6e-10 40.9 0.1 1.9e-10 40.7 0.1 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) ATPase PF06745.13 gi|282165496|ref|YP_003357881.1| - 3.9e-10 39.5 4.2 1.6e-09 37.5 4.2 1.8 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|282165496|ref|YP_003357881.1| - 3.3e-09 36.6 0.0 4.9e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|282165496|ref|YP_003357881.1| - 9.6e-06 25.5 0.0 1.6e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|282165496|ref|YP_003357881.1| - 0.00016 21.1 0.5 0.009 15.4 0.0 2.1 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain ATPase_2 PF01637.18 gi|282165496|ref|YP_003357881.1| - 0.0057 16.6 0.1 0.0072 16.3 0.1 1.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea KTI12 PF08433.10 gi|282165496|ref|YP_003357881.1| - 0.0062 16.0 0.0 0.0099 15.4 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 IstB_IS21 PF01695.17 gi|282165496|ref|YP_003357881.1| - 0.012 15.4 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein SRP54 PF00448.22 gi|282165496|ref|YP_003357881.1| - 0.012 15.2 0.1 0.022 14.4 0.1 1.3 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain TrwB_AAD_bind PF10412.9 gi|282165496|ref|YP_003357881.1| - 0.019 13.9 0.1 0.055 12.4 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 gi|282165496|ref|YP_003357881.1| - 0.024 14.7 0.0 0.04 14.0 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Rimk_N PF18030.1 gi|282165496|ref|YP_003357881.1| - 0.029 14.7 0.1 0.063 13.7 0.1 1.5 1 0 0 1 1 1 0 RimK PreATP-grasp domain NRDD PF13597.6 gi|282165498|ref|YP_003357883.1| - 1e-161 539.6 0.0 1.2e-161 539.3 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.16 gi|282165498|ref|YP_003357883.1| - 3.8e-11 43.4 0.3 4.2e-05 24.0 0.0 2.5 2 0 0 2 2 2 2 ATP cone domain DUF35_N PF12172.8 gi|282165498|ref|YP_003357883.1| - 0.11 12.4 0.5 0.21 11.5 0.5 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|282165498|ref|YP_003357883.1| - 1 8.9 2.4 19 4.8 0.4 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding Radical_SAM PF04055.21 gi|282165499|ref|YP_003357884.1| - 5.3e-16 59.4 0.0 8.6e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|282165499|ref|YP_003357884.1| - 4.9e-12 46.3 0.0 8.5e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|282165499|ref|YP_003357884.1| - 2.3e-07 31.0 0.0 3.8e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain AAA_17 PF13207.6 gi|282165501|ref|YP_003357886.1| - 1.1e-20 74.4 0.1 2.4e-20 73.4 0.1 1.6 1 0 0 1 1 1 1 AAA domain RNA_binding PF01877.17 gi|282165501|ref|YP_003357886.1| - 9.2e-15 55.0 0.0 2.3e-14 53.7 0.0 1.7 1 0 0 1 1 1 1 RNA binding AAA_18 PF13238.6 gi|282165501|ref|YP_003357886.1| - 1.2e-13 51.7 0.0 2.8e-13 50.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|282165501|ref|YP_003357886.1| - 4.5e-07 30.1 0.0 9.4e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|282165501|ref|YP_003357886.1| - 0.00019 21.6 0.9 0.00027 21.0 0.1 1.7 2 1 0 2 2 2 1 Adenylate kinase LexA_DNA_bind PF01726.16 gi|282165501|ref|YP_003357886.1| - 0.011 15.5 0.0 7.2 6.5 0.0 3.1 3 0 0 3 3 3 0 LexA DNA binding domain Ada3 PF10198.9 gi|282165501|ref|YP_003357886.1| - 0.025 14.7 0.1 0.054 13.6 0.1 1.5 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 Zeta_toxin PF06414.12 gi|282165501|ref|YP_003357886.1| - 0.047 13.0 0.0 0.076 12.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Cytidylate_kin2 PF13189.6 gi|282165501|ref|YP_003357886.1| - 0.13 12.4 0.2 5.1 7.2 0.2 2.3 1 1 0 1 1 1 0 Cytidylate kinase-like family AP_endonuc_2 PF01261.24 gi|282165502|ref|YP_003357887.1| - 5.4e-26 91.3 0.1 7.1e-26 90.9 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel MFS_1 PF07690.16 gi|282165503|ref|YP_003357888.1| - 1.8e-31 109.4 58.5 4.1e-24 85.2 26.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|282165503|ref|YP_003357888.1| - 0.001 18.0 20.4 0.0066 15.4 6.3 3.3 2 2 0 2 2 2 2 Sugar (and other) transporter YtpI PF14007.6 gi|282165503|ref|YP_003357888.1| - 0.0023 18.0 0.2 0.0023 18.0 0.2 2.5 2 1 0 2 2 2 1 YtpI-like protein MFS_1_like PF12832.7 gi|282165503|ref|YP_003357888.1| - 0.004 16.1 20.4 0.004 16.1 19.3 1.6 1 1 1 2 2 2 2 MFS_1 like family OATP PF03137.20 gi|282165503|ref|YP_003357888.1| - 0.015 13.6 8.4 0.32 9.2 1.1 2.4 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family MFS_1 PF07690.16 gi|282165504|ref|YP_003357889.1| - 7.5e-37 127.1 73.2 5e-31 107.9 42.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|282165504|ref|YP_003357889.1| - 6.5e-05 22.0 22.7 0.046 12.6 17.7 3.0 1 1 1 2 2 2 2 MFS_1 like family Lactamase_B_2 PF12706.7 gi|282165506|ref|YP_003357891.1| - 7.6e-20 71.3 0.0 8.7e-09 35.2 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|282165506|ref|YP_003357891.1| - 2.2e-09 37.6 0.7 5.1e-08 33.1 0.3 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|282165506|ref|YP_003357891.1| - 3.5e-07 29.8 0.0 7.9e-07 28.7 0.0 1.6 1 0 0 1 1 1 1 tRNase Z endonuclease CarboxypepD_reg PF13620.6 gi|282165507|ref|YP_003357892.1| - 3e-07 30.6 3.6 1e-06 28.9 3.6 1.9 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain PGF-CTERM PF18204.1 gi|282165507|ref|YP_003357892.1| - 5.9e-06 26.1 0.9 5.9e-06 26.1 0.9 2.0 2 0 0 2 2 2 1 PGF-CTERM motif SdrD_B PF17210.3 gi|282165507|ref|YP_003357892.1| - 0.0055 16.9 0.1 0.009 16.2 0.1 1.3 1 0 0 1 1 1 1 SdrD B-like domain GAPES3 PF17154.4 gi|282165507|ref|YP_003357892.1| - 0.022 14.7 0.1 0.038 14.0 0.1 1.4 1 0 0 1 1 1 0 Gammaproteobacterial periplasmic sensor domain fn3_3 PF14686.6 gi|282165507|ref|YP_003357892.1| - 0.058 13.2 1.3 0.09 12.6 1.3 1.4 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain II E1-E2_ATPase PF00122.20 gi|282165508|ref|YP_003357893.1| - 0.0085 15.6 0.3 0.0085 15.6 0.3 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Radical_SAM PF04055.21 gi|282165509|ref|YP_003357894.1| - 3.8e-16 59.9 0.0 1.6e-15 57.9 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.7 gi|282165509|ref|YP_003357894.1| - 0.00072 19.8 0.0 0.0019 18.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|282165509|ref|YP_003357894.1| - 0.0013 18.5 0.0 0.021 14.7 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|282165509|ref|YP_003357894.1| - 0.009 16.6 0.0 0.045 14.4 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain Cupredoxin_1 PF13473.6 gi|282165510|ref|YP_003357895.1| - 4.9e-17 61.9 0.0 5.6e-17 61.8 0.0 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|282165510|ref|YP_003357895.1| - 3.8e-15 56.1 0.7 2e-13 50.6 0.7 2.0 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SnoaL_3 PF13474.6 gi|282165510|ref|YP_003357895.1| - 0.065 13.5 0.0 0.081 13.2 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain Copper-bind PF00127.20 gi|282165511|ref|YP_003357896.1| - 1.4e-09 38.3 0.6 1.1e-07 32.2 0.6 2.1 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|282165511|ref|YP_003357896.1| - 6.9e-09 35.8 0.1 9.2e-09 35.3 0.1 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain DUF4231 PF14015.6 gi|282165512|ref|YP_003357897.1| - 0.16 12.4 3.2 0.32 11.5 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) MpPF26 PF07666.11 gi|282165512|ref|YP_003357897.1| - 0.18 11.9 5.9 0.23 11.6 5.9 1.2 1 0 0 1 1 1 0 M penetrans paralogue family 26 CxxCxxCC PF03692.15 gi|282165513|ref|YP_003357898.1| - 2.3e-09 37.8 0.2 1.7e-08 35.1 0.2 2.0 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain AhpC-TSA PF00578.21 gi|282165514|ref|YP_003357899.1| - 2e-24 85.9 0.0 2.4e-24 85.6 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|282165514|ref|YP_003357899.1| - 2.2e-12 46.9 0.0 2.8e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 gi|282165514|ref|YP_003357899.1| - 0.012 15.9 0.0 0.022 15.0 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like SCO1-SenC PF02630.14 gi|282165514|ref|YP_003357899.1| - 0.027 14.4 0.0 0.037 13.9 0.0 1.2 1 0 0 1 1 1 0 SCO1/SenC AhpC-TSA_2 PF13911.6 gi|282165514|ref|YP_003357899.1| - 0.056 13.6 0.0 0.083 13.0 0.0 1.3 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme CxxCxxCC PF03692.15 gi|282165515|ref|YP_003357900.1| - 2e-12 47.6 0.3 5.1e-12 46.3 0.3 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain MTHFR_C PF12225.8 gi|282165515|ref|YP_003357900.1| - 0.0025 17.4 1.6 0.66 9.7 0.4 2.2 2 0 0 2 2 2 2 Methylene-tetrahydrofolate reductase C terminal GATase PF00117.28 gi|282165516|ref|YP_003357901.1| - 5.8e-37 127.3 0.0 6.5e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|282165516|ref|YP_003357901.1| - 1.9e-15 57.2 0.2 6.6e-14 52.2 0.1 2.7 1 1 1 2 2 2 1 Peptidase C26 HTH_29 PF13551.6 gi|282165517|ref|YP_003357902.1| - 0.043 13.9 0.1 0.2 11.7 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix NucS PF01939.16 gi|282165517|ref|YP_003357902.1| - 0.061 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Endonuclease NucS zf-RING_7 PF02591.15 gi|282165519|ref|YP_003357904.1| - 0.011 15.9 0.1 0.025 14.7 0.1 1.6 1 0 0 1 1 1 0 C4-type zinc ribbon domain tRNA_anti-codon PF01336.25 gi|282165519|ref|YP_003357904.1| - 0.23 11.5 2.4 0.54 10.3 0.0 2.5 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|282165520|ref|YP_003357905.1| - 0.04 13.9 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain CarboxypepD_reg PF13620.6 gi|282165521|ref|YP_003357906.1| - 9.6e-15 54.6 6.0 2.7e-06 27.5 0.1 4.1 3 1 1 4 4 4 3 Carboxypeptidase regulatory-like domain MG4 PF17789.1 gi|282165521|ref|YP_003357906.1| - 4.5e-05 23.5 0.1 0.012 15.7 0.0 2.8 3 0 0 3 3 3 1 Macroglobulin domain MG4 bMG3 PF11974.8 gi|282165521|ref|YP_003357906.1| - 0.0002 21.3 0.2 0.042 13.9 0.0 2.8 3 0 0 3 3 3 1 Bacterial alpha-2-macroglobulin MG3 domain Big_1 PF02369.16 gi|282165521|ref|YP_003357906.1| - 0.00099 19.1 4.8 0.24 11.4 0.7 3.2 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 1) DUF1416 PF07210.12 gi|282165521|ref|YP_003357906.1| - 0.0016 18.3 0.3 3.3 7.6 0.0 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF1416) DUF4198 PF10670.9 gi|282165521|ref|YP_003357906.1| - 0.11 12.8 0.1 7.4 6.9 0.0 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4198) Dioxygenase_C PF00775.21 gi|282165521|ref|YP_003357906.1| - 0.14 11.6 0.0 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 Dioxygenase SdrD_B PF17210.3 gi|282165521|ref|YP_003357906.1| - 0.19 11.9 3.3 7.2 6.9 0.0 3.5 3 1 1 4 4 4 0 SdrD B-like domain Invasin_D3 PF09134.10 gi|282165521|ref|YP_003357906.1| - 0.29 11.5 4.1 6.2 7.2 0.1 3.2 3 0 0 3 3 3 0 Invasin, domain 3 HTH_24 PF13412.6 gi|282165522|ref|YP_003357907.1| - 4.3e-12 45.4 0.3 3.3e-08 33.0 0.2 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding PQQ_2 PF13360.6 gi|282165522|ref|YP_003357907.1| - 3.1e-10 40.0 0.1 0.001 18.7 0.0 4.4 2 1 1 3 3 3 2 PQQ-like domain PQQ_3 PF13570.6 gi|282165522|ref|YP_003357907.1| - 1.4e-07 31.7 18.3 0.0057 17.1 0.0 8.1 8 1 0 8 8 8 2 PQQ-like domain PQQ PF01011.21 gi|282165522|ref|YP_003357907.1| - 0.00013 21.7 5.4 20 5.3 0.0 7.5 7 0 0 7 7 7 0 PQQ enzyme repeat HTH_5 PF01022.20 gi|282165522|ref|YP_003357907.1| - 0.00014 21.6 0.0 0.013 15.3 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|282165522|ref|YP_003357907.1| - 0.00017 21.4 0.0 0.022 14.6 0.0 2.7 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|282165522|ref|YP_003357907.1| - 0.00035 20.4 0.1 0.00096 19.0 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|282165522|ref|YP_003357907.1| - 0.00037 20.3 0.0 0.0073 16.2 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|282165522|ref|YP_003357907.1| - 0.0012 18.6 0.0 1.2 9.0 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|282165522|ref|YP_003357907.1| - 0.0034 17.3 0.0 0.0098 15.8 0.0 1.7 1 0 0 1 1 1 1 HTH domain GerE PF00196.19 gi|282165522|ref|YP_003357907.1| - 0.015 14.8 0.0 0.036 13.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.7 gi|282165522|ref|YP_003357907.1| - 0.016 15.3 0.0 3.7 7.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|282165522|ref|YP_003357907.1| - 0.016 15.4 0.0 0.037 14.2 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|282165522|ref|YP_003357907.1| - 0.065 13.1 0.0 0.22 11.4 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain NUMOD1 PF07453.13 gi|282165522|ref|YP_003357907.1| - 0.11 12.8 1.0 0.72 10.2 0.1 2.8 3 0 0 3 3 3 0 NUMOD1 domain HTH_3 PF01381.22 gi|282165522|ref|YP_003357907.1| - 0.13 12.4 0.1 0.26 11.4 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix CarboxypepD_reg PF13620.6 gi|282165523|ref|YP_003357908.1| - 6.4e-11 42.4 3.6 1.1e-10 41.7 3.5 1.5 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF1416 PF07210.12 gi|282165523|ref|YP_003357908.1| - 3e-05 23.8 0.1 4.1e-05 23.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1416) Big_1 PF02369.16 gi|282165523|ref|YP_003357908.1| - 9.6e-05 22.3 1.8 0.00012 22.0 0.7 1.8 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) bMG3 PF11974.8 gi|282165523|ref|YP_003357908.1| - 0.0033 17.4 0.0 0.0049 16.9 0.0 1.4 1 1 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain CarbopepD_reg_2 PF13715.6 gi|282165523|ref|YP_003357908.1| - 0.0042 17.1 1.3 0.0073 16.3 0.1 1.7 1 1 1 2 2 2 1 CarboxypepD_reg-like domain Invasin_D3 PF09134.10 gi|282165523|ref|YP_003357908.1| - 0.012 15.9 0.5 0.021 15.1 0.5 1.5 1 1 0 1 1 1 0 Invasin, domain 3 Cytomega_UL20A PF05984.12 gi|282165523|ref|YP_003357908.1| - 0.012 15.9 0.5 0.024 14.9 0.1 1.7 2 0 0 2 2 2 0 Cytomegalovirus UL20A protein SdrD_B PF17210.3 gi|282165523|ref|YP_003357908.1| - 0.015 15.5 1.0 0.022 15.0 1.0 1.3 1 0 0 1 1 1 0 SdrD B-like domain Big_3_5 PF16640.5 gi|282165523|ref|YP_003357908.1| - 0.019 15.1 6.4 0.023 14.9 5.5 1.6 1 1 0 1 1 1 0 Bacterial Ig-like domain (group 3) Dioxygenase_C PF00775.21 gi|282165523|ref|YP_003357908.1| - 0.031 13.7 0.0 0.044 13.2 0.0 1.2 1 0 0 1 1 1 0 Dioxygenase Big_6 PF17936.1 gi|282165523|ref|YP_003357908.1| - 0.034 14.4 0.3 0.058 13.7 0.3 1.5 1 1 0 1 1 1 0 Bacterial Ig domain DUF4198 PF10670.9 gi|282165523|ref|YP_003357908.1| - 0.066 13.6 0.1 0.14 12.5 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) DUF824 PF05688.11 gi|282165523|ref|YP_003357908.1| - 0.1 12.5 0.1 0.24 11.3 0.1 1.6 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) CarboxypepD_reg PF13620.6 gi|282165524|ref|YP_003357909.1| - 3e-10 40.2 0.6 3.9e-09 36.7 0.6 2.4 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|282165524|ref|YP_003357909.1| - 0.00016 21.6 0.4 0.00045 20.2 0.4 1.9 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarbopepD_reg_2 PF13715.6 gi|282165524|ref|YP_003357909.1| - 0.00025 21.0 0.1 0.00078 19.4 0.1 1.8 1 1 1 2 2 2 1 CarboxypepD_reg-like domain SdrD_B PF17210.3 gi|282165524|ref|YP_003357909.1| - 0.0022 18.2 0.1 0.0034 17.6 0.1 1.3 1 0 0 1 1 1 1 SdrD B-like domain bMG3 PF11974.8 gi|282165524|ref|YP_003357909.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.7 2 0 0 2 2 2 1 Bacterial alpha-2-macroglobulin MG3 domain Dioxygenase_C PF00775.21 gi|282165524|ref|YP_003357909.1| - 0.014 14.9 0.0 0.03 13.7 0.0 1.5 1 1 0 1 1 1 0 Dioxygenase TTR-52 PF01060.23 gi|282165524|ref|YP_003357909.1| - 0.043 14.5 0.0 0.35 11.6 0.0 2.1 1 1 1 2 2 2 0 Transthyretin-like family DUF4366 PF14283.6 gi|282165524|ref|YP_003357909.1| - 0.05 13.7 0.0 0.073 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) HTH_24 PF13412.6 gi|282165525|ref|YP_003357910.1| - 1.9e-15 56.2 0.0 1.8e-07 30.6 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding PQQ_2 PF13360.6 gi|282165525|ref|YP_003357910.1| - 7.6e-13 48.6 3.7 3.4e-05 23.6 0.0 4.0 3 2 0 3 3 3 2 PQQ-like domain HTH_5 PF01022.20 gi|282165525|ref|YP_003357910.1| - 8.6e-11 41.5 0.0 0.00012 21.9 0.0 2.9 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|282165525|ref|YP_003357910.1| - 1.1e-09 38.2 0.2 0.00015 21.7 0.3 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|282165525|ref|YP_003357910.1| - 4e-09 36.2 0.0 0.00067 19.5 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.10 gi|282165525|ref|YP_003357910.1| - 3.1e-06 26.9 0.0 0.014 15.2 0.0 2.5 2 0 0 2 2 2 2 IclR helix-turn-helix domain PQQ PF01011.21 gi|282165525|ref|YP_003357910.1| - 3.2e-05 23.6 6.3 9.9 6.3 0.0 6.5 6 1 1 7 7 6 1 PQQ enzyme repeat MarR PF01047.22 gi|282165525|ref|YP_003357910.1| - 4.4e-05 23.3 0.1 0.045 13.7 0.1 2.6 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|282165525|ref|YP_003357910.1| - 9.8e-05 22.2 0.1 0.0091 15.9 0.1 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|282165525|ref|YP_003357910.1| - 0.0017 18.0 0.0 0.053 13.2 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 TFIIE_alpha PF02002.17 gi|282165525|ref|YP_003357910.1| - 0.0022 17.8 0.0 0.057 13.3 0.1 2.2 2 0 0 2 2 2 1 TFIIE alpha subunit GerE PF00196.19 gi|282165525|ref|YP_003357910.1| - 0.0027 17.2 0.0 0.24 11.0 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_AsnC-type PF13404.6 gi|282165525|ref|YP_003357910.1| - 0.0091 15.8 0.0 6.3 6.7 0.0 2.7 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain PQQ_3 PF13570.6 gi|282165525|ref|YP_003357910.1| - 0.011 16.2 33.9 1.5 9.4 0.6 8.1 9 0 0 9 9 7 0 PQQ-like domain HTH_34 PF13601.6 gi|282165525|ref|YP_003357910.1| - 0.025 14.8 0.0 0.38 11.0 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|282165525|ref|YP_003357910.1| - 0.034 14.5 0.2 0.6 10.5 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator RP-C PF03428.13 gi|282165525|ref|YP_003357910.1| - 0.09 12.4 0.1 0.42 10.3 0.0 2.0 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_38 PF13936.6 gi|282165525|ref|YP_003357910.1| - 0.16 11.8 0.0 0.5 10.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CarboxypepD_reg PF13620.6 gi|282165526|ref|YP_003357911.1| - 1.7e-14 53.8 1.5 2.9e-14 53.1 1.5 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Peptidase_MA_2 PF13485.6 gi|282165526|ref|YP_003357911.1| - 1.3e-11 44.7 0.0 1.9e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase MA superfamily phage_tail_N PF08400.10 gi|282165526|ref|YP_003357911.1| - 0.00042 20.3 0.1 0.00084 19.3 0.1 1.4 1 0 0 1 1 1 1 Prophage tail fibre N-terminal Big_1 PF02369.16 gi|282165526|ref|YP_003357911.1| - 0.001 19.0 0.2 0.0024 17.8 0.2 1.5 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|282165526|ref|YP_003357911.1| - 0.012 15.9 0.2 0.028 14.7 0.2 1.6 1 0 0 1 1 1 0 Invasin, domain 3 TGT_C2 PF14810.6 gi|282165527|ref|YP_003357912.1| - 2.9e-27 94.6 0.2 4.8e-27 93.9 0.2 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|282165527|ref|YP_003357912.1| - 1.6e-16 60.0 0.1 9.6e-16 57.5 0.1 2.0 2 0 0 2 2 2 1 PUA domain UPF0020 PF01170.18 gi|282165529|ref|YP_003357914.1| - 2e-21 76.6 0.0 7.1e-21 74.8 0.0 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|282165529|ref|YP_003357914.1| - 6.8e-10 39.2 0.1 1.8e-09 37.8 0.0 1.7 2 0 0 2 2 2 1 THUMP domain Methyltransf_25 PF13649.6 gi|282165529|ref|YP_003357914.1| - 7.2e-06 26.6 0.1 6.8e-05 23.5 0.1 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282165529|ref|YP_003357914.1| - 8.9e-06 25.6 0.0 1.5e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|282165529|ref|YP_003357914.1| - 0.00014 22.5 0.0 0.00066 20.3 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|282165529|ref|YP_003357914.1| - 0.00029 20.6 0.0 0.058 13.1 0.0 2.3 2 0 0 2 2 2 2 DNA methylase Ubie_methyltran PF01209.18 gi|282165529|ref|YP_003357914.1| - 0.0011 18.3 0.3 0.015 14.7 0.3 2.4 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.16 gi|282165529|ref|YP_003357914.1| - 0.0035 16.7 0.0 0.0055 16.0 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Cons_hypoth95 PF03602.15 gi|282165529|ref|YP_003357914.1| - 0.049 13.3 0.0 0.1 12.2 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical protein 95 AviRa PF11599.8 gi|282165529|ref|YP_003357914.1| - 0.09 12.2 0.0 0.18 11.3 0.0 1.4 1 1 0 1 1 1 0 RRNA methyltransferase AviRa MTS PF05175.14 gi|282165529|ref|YP_003357914.1| - 0.13 11.8 0.0 0.28 10.7 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase small domain ACT_6 PF13740.6 gi|282165530|ref|YP_003357915.1| - 6.3e-16 58.1 1.2 7.1e-16 58.0 1.2 1.0 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|282165530|ref|YP_003357915.1| - 1.2e-08 35.5 1.1 1.6e-08 35.0 1.1 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|282165530|ref|YP_003357915.1| - 2.6e-08 33.5 0.4 3.4e-08 33.1 0.4 1.2 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|282165530|ref|YP_003357915.1| - 1.9e-05 24.4 0.2 3e-05 23.7 0.2 1.4 1 0 0 1 1 1 1 ACT domain DUF711 PF05167.12 gi|282165531|ref|YP_003357916.1| - 4.6e-168 559.3 7.1 5.6e-168 559.0 7.1 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) DUF1611 PF07755.11 gi|282165531|ref|YP_003357916.1| - 0.26 10.6 0.0 0.26 10.6 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1611_C) P-loop domain Pyridox_ox_2 PF12900.7 gi|282165532|ref|YP_003357917.1| - 5.9e-23 81.4 0.0 6.7e-23 81.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|282165532|ref|YP_003357917.1| - 2.8e-12 46.6 0.0 5.9e-12 45.6 0.0 1.6 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FMN_bind_2 PF04299.12 gi|282165532|ref|YP_003357917.1| - 0.17 11.6 0.0 2.7 7.7 0.0 2.0 2 0 0 2 2 2 0 Putative FMN-binding domain Wzz PF02706.15 gi|282165533|ref|YP_003357918.1| - 0.057 13.7 0.1 0.09 13.1 0.1 1.4 1 0 0 1 1 1 0 Chain length determinant protein PmbA_TldD PF01523.16 gi|282165534|ref|YP_003357919.1| - 1.1e-53 182.9 1.7 1.4e-53 182.6 1.7 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|282165535|ref|YP_003357920.1| - 4.6e-63 213.7 0.1 5.9e-63 213.3 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.13 gi|282165536|ref|YP_003357921.1| - 5.5e-33 114.3 3.0 8.7e-33 113.6 3.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|282165536|ref|YP_003357921.1| - 3.2e-32 112.0 0.0 3.2e-23 82.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|282165536|ref|YP_003357921.1| - 1e-17 64.2 0.2 1.3e-10 41.0 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|282165536|ref|YP_003357921.1| - 9.4e-17 61.2 0.4 1.8e-09 37.5 0.1 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.6 gi|282165536|ref|YP_003357921.1| - 2.8e-11 43.3 0.3 6.6e-11 42.1 0.3 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.14 gi|282165536|ref|YP_003357921.1| - 3e-11 43.5 0.0 0.00038 20.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|282165536|ref|YP_003357921.1| - 1.9e-08 33.7 0.1 0.00068 18.8 0.0 2.5 2 0 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|282165536|ref|YP_003357921.1| - 1.4e-07 32.0 0.0 0.0076 16.7 0.0 3.2 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|282165536|ref|YP_003357921.1| - 2.5e-06 27.3 0.2 0.01 15.6 0.1 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|282165536|ref|YP_003357921.1| - 3.7e-06 27.2 0.0 0.00081 19.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|282165536|ref|YP_003357921.1| - 2.9e-05 23.7 0.0 0.00026 20.6 0.0 2.4 3 0 0 3 3 2 1 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|282165536|ref|YP_003357921.1| - 3.5e-05 23.9 0.0 0.15 12.1 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|282165536|ref|YP_003357921.1| - 0.00011 22.1 0.1 0.44 10.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|282165536|ref|YP_003357921.1| - 0.00021 21.7 0.9 0.0022 18.4 0.9 2.4 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|282165536|ref|YP_003357921.1| - 0.00049 19.4 0.1 0.42 9.7 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_18 PF13238.6 gi|282165536|ref|YP_003357921.1| - 0.00059 20.4 0.0 0.0045 17.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|282165536|ref|YP_003357921.1| - 0.00062 19.3 0.1 0.0017 17.9 0.1 1.7 1 1 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.6 gi|282165536|ref|YP_003357921.1| - 0.0012 18.7 0.0 0.013 15.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|282165536|ref|YP_003357921.1| - 0.0053 17.2 0.0 0.18 12.2 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain Parvo_NS1 PF01057.17 gi|282165536|ref|YP_003357921.1| - 0.0068 15.5 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|282165536|ref|YP_003357921.1| - 0.012 15.5 0.0 0.052 13.5 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|282165536|ref|YP_003357921.1| - 0.013 15.7 0.0 0.034 14.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain IstB_IS21 PF01695.17 gi|282165536|ref|YP_003357921.1| - 0.016 15.0 0.0 0.054 13.2 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_2 PF07724.14 gi|282165536|ref|YP_003357921.1| - 0.019 15.1 0.0 9.7 6.3 0.0 2.7 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) ABC_tran PF00005.27 gi|282165536|ref|YP_003357921.1| - 0.021 15.3 0.0 0.086 13.4 0.0 2.0 2 0 0 2 2 2 0 ABC transporter DUF815 PF05673.13 gi|282165536|ref|YP_003357921.1| - 0.023 13.9 0.0 0.048 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF4191 PF13829.6 gi|282165536|ref|YP_003357921.1| - 0.048 13.0 1.9 0.11 11.9 1.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) ResIII PF04851.15 gi|282165536|ref|YP_003357921.1| - 0.049 13.6 0.5 0.17 11.9 0.0 2.1 2 1 1 3 3 2 0 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.18 gi|282165536|ref|YP_003357921.1| - 0.056 12.8 0.0 0.16 11.3 0.0 1.7 2 0 0 2 2 1 0 FtsK/SpoIIIE family AAA_PrkA PF08298.11 gi|282165536|ref|YP_003357921.1| - 0.056 12.3 0.1 3.2 6.6 0.0 2.3 2 0 0 2 2 2 0 PrkA AAA domain T2SSE PF00437.20 gi|282165536|ref|YP_003357921.1| - 0.058 12.5 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein TrwB_AAD_bind PF10412.9 gi|282165536|ref|YP_003357921.1| - 0.062 12.2 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Birna_VP4 PF01768.16 gi|282165536|ref|YP_003357921.1| - 0.065 13.0 1.4 0.65 9.8 0.2 2.4 2 0 0 2 2 2 0 Birnavirus VP4 protein AAA_10 PF12846.7 gi|282165536|ref|YP_003357921.1| - 0.081 11.8 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_28 PF13521.6 gi|282165536|ref|YP_003357921.1| - 0.082 13.1 0.0 0.23 11.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|282165536|ref|YP_003357921.1| - 0.093 12.1 0.1 0.96 8.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein KTI12 PF08433.10 gi|282165536|ref|YP_003357921.1| - 0.094 12.1 0.2 0.25 10.8 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 MCM_lid PF17855.1 gi|282165536|ref|YP_003357921.1| - 0.12 12.8 0.1 0.52 10.8 0.0 2.1 1 1 1 2 2 2 0 MCM AAA-lid domain NPCBM_assoc PF10633.9 gi|282165537|ref|YP_003357922.1| - 7.8e-11 42.1 2.7 0.0002 21.5 0.2 4.5 5 1 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|282165537|ref|YP_003357922.1| - 9.8e-06 25.8 0.3 0.93 9.8 0.0 4.4 3 1 0 3 3 3 3 CARDB MMPL PF03176.15 gi|282165538|ref|YP_003357923.1| - 2.2e-48 164.9 16.2 2.9e-24 85.6 2.7 2.5 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|282165538|ref|YP_003357923.1| - 1.5e-07 31.4 16.5 3.9e-06 26.8 3.3 2.9 2 1 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.19 gi|282165538|ref|YP_003357923.1| - 3e-07 28.6 18.1 5.4e-05 21.1 5.8 2.1 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Patched PF02460.18 gi|282165538|ref|YP_003357923.1| - 0.0012 17.0 22.1 0.0021 16.3 11.9 2.3 2 0 0 2 2 2 2 Patched family Terpene_synth_C PF03936.16 gi|282165538|ref|YP_003357923.1| - 0.072 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Terpene synthase family, metal binding domain SecD_SecF PF02355.16 gi|282165538|ref|YP_003357923.1| - 1.7 8.0 32.3 0.019 14.4 9.2 3.8 4 0 0 4 4 4 0 Protein export membrane protein HD PF01966.22 gi|282165539|ref|YP_003357924.1| - 9.8e-05 22.6 0.7 0.00019 21.6 0.6 1.7 1 1 0 1 1 1 1 HD domain HTH_3 PF01381.22 gi|282165540|ref|YP_003357925.1| - 1.6e-11 44.0 0.2 3e-11 43.2 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|282165540|ref|YP_003357925.1| - 3.6e-07 30.1 0.3 9.8e-07 28.7 0.3 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|282165540|ref|YP_003357925.1| - 2.8e-05 24.4 0.0 6.5e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|282165540|ref|YP_003357925.1| - 4.7e-05 23.3 0.1 0.00015 21.6 0.1 1.9 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.6 gi|282165540|ref|YP_003357925.1| - 0.005 16.7 0.1 0.012 15.5 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF1743 PF08489.11 gi|282165541|ref|YP_003357926.1| - 9.9e-41 138.4 0.0 1.6e-40 137.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|282165541|ref|YP_003357926.1| - 0.00023 21.1 0.1 0.00052 19.9 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|282165541|ref|YP_003357926.1| - 0.0046 17.1 0.0 0.0097 16.1 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.11 gi|282165541|ref|YP_003357926.1| - 0.0052 16.7 1.1 0.012 15.5 1.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.14 gi|282165541|ref|YP_003357926.1| - 0.02 14.7 0.1 0.038 13.8 0.1 1.4 1 0 0 1 1 1 0 Rad50 zinc hook motif HypA PF01155.19 gi|282165541|ref|YP_003357926.1| - 0.028 14.4 0.3 0.11 12.5 0.1 2.2 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|282165541|ref|YP_003357926.1| - 0.044 13.8 1.1 0.11 12.5 1.1 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain SBP PF03110.14 gi|282165541|ref|YP_003357926.1| - 0.047 14.0 0.3 4.3 7.7 0.0 2.4 2 0 0 2 2 2 0 SBP domain C1_1 PF00130.22 gi|282165541|ref|YP_003357926.1| - 0.076 12.9 3.0 0.12 12.2 0.6 2.3 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF4878 PF12870.7 gi|282165541|ref|YP_003357926.1| - 0.15 12.4 0.0 0.27 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4878) C1_2 PF03107.16 gi|282165541|ref|YP_003357926.1| - 0.17 12.3 1.6 0.37 11.2 0.2 2.1 2 0 0 2 2 2 0 C1 domain DZR PF12773.7 gi|282165541|ref|YP_003357926.1| - 0.39 10.8 6.1 0.3 11.2 0.8 2.7 3 0 0 3 3 3 0 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|282165541|ref|YP_003357926.1| - 0.39 10.6 5.5 0.17 11.7 1.8 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit YhfH PF14149.6 gi|282165541|ref|YP_003357926.1| - 0.41 10.7 3.1 1.2 9.2 2.6 2.1 1 1 1 2 2 2 0 YhfH-like protein zf-TFIIB PF13453.6 gi|282165541|ref|YP_003357926.1| - 0.42 10.0 2.1 1.1 8.7 2.1 1.7 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|282165541|ref|YP_003357926.1| - 0.82 9.8 5.9 11 6.2 0.1 3.3 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|282165541|ref|YP_003357926.1| - 8.5 6.2 7.8 25 4.8 0.2 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|282165541|ref|YP_003357926.1| - 9.4 6.1 6.5 6.9 6.5 0.4 3.0 3 0 0 3 3 3 0 Rubredoxin metal binding domain CBS PF00571.28 gi|282165542|ref|YP_003357927.1| - 4e-45 152.1 17.1 3.6e-14 52.9 0.3 4.5 5 0 0 5 5 5 4 CBS domain GAF PF01590.26 gi|282165542|ref|YP_003357927.1| - 0.011 16.4 0.0 6.3 7.4 0.0 3.1 2 1 1 3 3 3 0 GAF domain Usp PF00582.26 gi|282165543|ref|YP_003357928.1| - 3.1e-36 125.0 0.1 3.5e-36 124.8 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.16 gi|282165543|ref|YP_003357928.1| - 0.053 14.2 0.2 0.075 13.7 0.2 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Amidohydro_1 PF01979.20 gi|282165544|ref|YP_003357929.1| - 2.5e-30 106.0 0.1 4.4e-29 101.9 0.1 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|282165544|ref|YP_003357929.1| - 8.2e-11 42.0 1.2 1.3e-09 38.1 0.1 2.4 2 1 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.22 gi|282165544|ref|YP_003357929.1| - 5.3e-05 22.7 0.0 7.6e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Sec61_beta PF03911.16 gi|282165545|ref|YP_003357930.1| - 4.1e-16 58.7 0.2 5.1e-16 58.4 0.2 1.1 1 0 0 1 1 1 1 Sec61beta family MMR_HSR1 PF01926.23 gi|282165547|ref|YP_003357932.1| - 1.2e-18 67.2 0.0 1.6e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|282165547|ref|YP_003357932.1| - 9.3e-13 48.0 0.1 9.6e-12 44.7 0.1 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|282165547|ref|YP_003357932.1| - 2e-06 27.5 0.0 0.00087 18.9 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|282165547|ref|YP_003357932.1| - 1.1e-05 25.5 0.0 0.0033 17.3 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase Roc PF08477.13 gi|282165547|ref|YP_003357932.1| - 0.011 15.9 1.0 0.072 13.3 1.0 2.3 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|282165547|ref|YP_003357932.1| - 0.02 14.7 0.2 0.4 10.4 0.1 2.3 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|282165547|ref|YP_003357932.1| - 0.037 14.6 0.0 0.047 14.2 0.0 1.3 1 0 0 1 1 1 0 ABC transporter SRPRB PF09439.10 gi|282165547|ref|YP_003357932.1| - 0.049 13.1 0.1 0.16 11.4 0.1 1.8 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|282165547|ref|YP_003357932.1| - 0.049 13.7 0.1 0.093 12.8 0.1 1.5 1 1 0 1 1 1 0 Dynamin family RNA_helicase PF00910.22 gi|282165547|ref|YP_003357932.1| - 0.059 13.8 0.1 0.53 10.7 0.0 2.1 2 0 0 2 2 2 0 RNA helicase PduV-EutP PF10662.9 gi|282165547|ref|YP_003357932.1| - 0.071 12.9 0.1 0.16 11.7 0.0 1.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Ras PF00071.22 gi|282165547|ref|YP_003357932.1| - 0.086 12.4 0.2 1.2 8.7 0.1 2.1 2 0 0 2 2 2 0 Ras family AAA_29 PF13555.6 gi|282165547|ref|YP_003357932.1| - 0.099 12.4 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arf PF00025.21 gi|282165547|ref|YP_003357932.1| - 0.12 11.8 0.4 1.2 8.6 0.4 2.3 1 1 0 1 1 1 0 ADP-ribosylation factor family AAA_7 PF12775.7 gi|282165547|ref|YP_003357932.1| - 0.13 11.8 0.1 0.31 10.5 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|282165547|ref|YP_003357932.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MobB PF03205.14 gi|282165547|ref|YP_003357932.1| - 0.14 12.1 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|282165547|ref|YP_003357932.1| - 0.15 11.0 0.2 6 5.8 0.1 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_15 PF13175.6 gi|282165547|ref|YP_003357932.1| - 0.15 11.7 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain ATP-grasp PF02222.22 gi|282165548|ref|YP_003357933.1| - 6.4e-41 139.8 0.0 1.2e-40 138.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|282165548|ref|YP_003357933.1| - 1.4e-08 34.5 0.0 2.4e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|282165548|ref|YP_003357933.1| - 2.2e-05 24.1 0.1 4.4e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain 2-Hacid_dh_C PF02826.19 gi|282165548|ref|YP_003357933.1| - 0.0039 16.6 0.0 0.0078 15.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_4 PF13535.6 gi|282165548|ref|YP_003357933.1| - 0.0073 15.9 0.1 0.043 13.4 0.1 2.2 2 0 0 2 2 2 1 ATP-grasp domain RimK PF08443.11 gi|282165548|ref|YP_003357933.1| - 0.011 15.3 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 RimK-like ATP-grasp domain LAL_C2 PF18603.1 gi|282165548|ref|YP_003357933.1| - 0.015 15.4 0.1 0.06 13.5 0.1 1.9 2 0 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 ATPgrasp_ST PF14397.6 gi|282165548|ref|YP_003357933.1| - 0.021 14.1 0.1 0.062 12.5 0.1 1.7 1 1 0 1 1 1 0 Sugar-transfer associated ATP-grasp DUF448 PF04296.13 gi|282165548|ref|YP_003357933.1| - 0.028 14.3 0.1 3.2 7.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF448) ATPgrasp_N PF18130.1 gi|282165548|ref|YP_003357933.1| - 0.069 13.7 0.2 0.82 10.3 0.0 2.4 2 0 0 2 2 2 0 ATP-grasp N-terminal domain Epimerase PF01370.21 gi|282165548|ref|YP_003357933.1| - 0.097 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Fer4 PF00037.27 gi|282165549|ref|YP_003357934.1| - 4.7e-09 35.7 15.1 3e-05 23.6 4.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|282165549|ref|YP_003357934.1| - 4.5e-07 29.7 13.5 0.00012 22.0 3.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|282165549|ref|YP_003357934.1| - 1.2e-05 25.8 14.8 0.0039 17.8 5.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|282165549|ref|YP_003357934.1| - 1.3e-05 25.2 15.0 2.2e-05 24.5 15.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|282165549|ref|YP_003357934.1| - 2.3e-05 24.5 14.9 0.016 15.4 4.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|282165549|ref|YP_003357934.1| - 3.3e-05 24.1 17.8 0.01 16.3 3.9 2.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|282165549|ref|YP_003357934.1| - 7.8e-05 23.5 15.1 0.017 16.0 4.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|282165549|ref|YP_003357934.1| - 9.3e-05 22.8 12.4 0.027 14.9 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|282165549|ref|YP_003357934.1| - 0.00014 21.9 17.3 0.012 15.7 17.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|282165549|ref|YP_003357934.1| - 0.00043 20.2 18.1 0.0045 17.0 3.4 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|282165549|ref|YP_003357934.1| - 0.0026 18.2 16.2 0.049 14.2 2.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|282165549|ref|YP_003357934.1| - 0.027 15.3 15.4 0.058 14.3 3.7 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|282165549|ref|YP_003357934.1| - 0.48 11.0 15.4 1.5 9.4 2.2 2.7 1 1 2 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|282165549|ref|YP_003357934.1| - 1.4 9.1 10.8 1.7 8.9 10.8 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Ribosomal_S14 PF00253.21 gi|282165549|ref|YP_003357934.1| - 7 6.5 8.2 4.5 7.1 1.9 2.1 1 1 1 2 2 2 0 Ribosomal protein S14p/S29e Amino_oxidase PF01593.24 gi|282165550|ref|YP_003357935.1| - 8.7e-13 48.3 0.0 8.5e-09 35.2 0.0 2.0 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|282165550|ref|YP_003357935.1| - 7e-09 35.8 0.1 3e-08 33.8 0.1 2.2 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|282165550|ref|YP_003357935.1| - 2e-06 27.3 0.5 0.13 11.5 0.1 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|282165550|ref|YP_003357935.1| - 9.9e-06 25.4 3.4 8.5e-05 22.3 3.4 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|282165550|ref|YP_003357935.1| - 0.00073 18.3 0.1 0.1 11.3 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|282165550|ref|YP_003357935.1| - 0.01 14.9 1.7 2.3 7.2 0.0 2.5 3 0 0 3 3 3 0 FAD binding domain GDI PF00996.18 gi|282165550|ref|YP_003357935.1| - 0.011 14.3 0.0 0.018 13.5 0.0 1.3 1 0 0 1 1 1 0 GDP dissociation inhibitor Pyr_redox PF00070.27 gi|282165550|ref|YP_003357935.1| - 0.015 15.8 0.9 0.62 10.7 0.1 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fasciclin PF02469.22 gi|282165553|ref|YP_003357938.1| - 1e-35 122.7 0.1 1.3e-35 122.4 0.1 1.1 1 0 0 1 1 1 1 Fasciclin domain Fasciclin PF02469.22 gi|282165554|ref|YP_003357939.1| - 2.4e-40 137.7 0.0 2.9e-40 137.4 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain SOUL PF04832.12 gi|282165555|ref|YP_003357940.1| - 2.5e-49 167.7 1.2 1.4e-46 158.8 1.2 2.0 1 1 0 1 1 1 1 SOUL heme-binding protein Cass2 PF14526.6 gi|282165555|ref|YP_003357940.1| - 0.0041 17.3 0.2 0.016 15.4 0.0 1.8 1 1 1 2 2 2 1 Integron-associated effector binding protein Thr_dehydrat_C PF00585.18 gi|282165555|ref|YP_003357940.1| - 0.15 11.8 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 C-terminal regulatory domain of Threonine dehydratase zinc_ribbon_2 PF13240.6 gi|282165556|ref|YP_003357941.1| - 0.00068 19.3 1.9 0.00068 19.3 1.9 1.7 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|282165556|ref|YP_003357941.1| - 0.026 14.5 3.3 0.031 14.3 3.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_4 PF14570.6 gi|282165556|ref|YP_003357941.1| - 0.12 12.2 5.7 0.62 9.9 5.0 2.2 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain Zn-ribbon_8 PF09723.10 gi|282165556|ref|YP_003357941.1| - 4 7.6 10.2 11 6.2 6.6 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DUF523 PF04463.12 gi|282165557|ref|YP_003357942.1| - 1.4e-26 93.2 0.0 1.9e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.11 gi|282165557|ref|YP_003357942.1| - 3.9e-12 46.5 0.0 5.5e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) FMN_red PF03358.15 gi|282165558|ref|YP_003357943.1| - 3.3e-07 30.2 0.0 3.9e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.7 gi|282165558|ref|YP_003357943.1| - 6.9e-06 25.9 0.1 3.8e-05 23.4 0.1 1.9 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_1 PF00258.25 gi|282165558|ref|YP_003357943.1| - 0.00022 21.5 0.0 0.00099 19.3 0.0 1.9 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|282165558|ref|YP_003357943.1| - 0.00022 21.0 0.1 0.014 15.1 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_2 PF02525.17 gi|282165558|ref|YP_003357943.1| - 0.029 14.1 0.3 0.079 12.7 0.1 1.6 1 1 1 2 2 2 0 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|282165558|ref|YP_003357943.1| - 0.054 13.7 0.0 2.5 8.3 0.0 2.1 1 1 0 1 1 1 0 Flavodoxin domain Pyridox_ox_2 PF12900.7 gi|282165559|ref|YP_003357944.1| - 1.4e-17 64.0 0.0 1.9e-17 63.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|282165559|ref|YP_003357944.1| - 0.00018 21.6 0.0 0.00028 21.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Fasciclin PF02469.22 gi|282165560|ref|YP_003357945.1| - 2.5e-36 124.7 0.0 3.4e-36 124.3 0.0 1.2 1 0 0 1 1 1 1 Fasciclin domain SBP_bac_3 PF00497.20 gi|282165560|ref|YP_003357945.1| - 0.066 12.6 0.1 0.082 12.3 0.1 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Flavodoxin_3 PF12641.7 gi|282165563|ref|YP_003357948.1| - 8.6e-14 51.5 0.1 2.2e-13 50.2 0.0 1.6 1 1 1 2 2 2 1 Flavodoxin domain Flavodoxin_5 PF12724.7 gi|282165563|ref|YP_003357948.1| - 1.5e-09 38.3 0.0 1.8e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|282165563|ref|YP_003357948.1| - 1.3e-07 31.9 1.0 2.5e-07 31.0 1.0 1.5 1 1 0 1 1 1 1 Flavodoxin MctB PF11382.8 gi|282165563|ref|YP_003357948.1| - 0.0049 16.6 0.2 0.0091 15.7 0.1 1.4 1 1 0 1 1 1 1 Copper transport outer membrane protein, MctB Flavodoxin_4 PF12682.7 gi|282165563|ref|YP_003357948.1| - 0.0086 15.8 0.3 0.64 9.7 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin SPOR PF05036.13 gi|282165563|ref|YP_003357948.1| - 0.11 12.9 0.1 0.19 12.1 0.1 1.4 1 0 0 1 1 1 0 Sporulation related domain DUF5589 PF17672.1 gi|282165563|ref|YP_003357948.1| - 0.14 12.1 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5589) MarR_2 PF12802.7 gi|282165564|ref|YP_003357949.1| - 4.6e-05 23.2 0.0 9.5e-05 22.2 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|282165564|ref|YP_003357949.1| - 0.00013 22.4 0.1 0.00023 21.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|282165564|ref|YP_003357949.1| - 0.0033 17.3 0.3 0.0088 16.0 0.2 1.7 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|282165564|ref|YP_003357949.1| - 0.0086 16.0 0.3 0.018 15.0 0.3 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain SgrR_N PF12793.7 gi|282165564|ref|YP_003357949.1| - 0.012 15.8 0.1 0.028 14.6 0.1 1.8 1 1 0 1 1 1 0 Sugar transport-related sRNA regulator N-term kleA_kleC PF17383.2 gi|282165564|ref|YP_003357949.1| - 0.044 14.1 1.5 0.075 13.4 0.3 1.9 2 0 0 2 2 2 0 Uncharacterized KorC regulated protein A Flavodoxin_5 PF12724.7 gi|282165565|ref|YP_003357950.1| - 0.00019 21.7 0.0 0.00026 21.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|282165565|ref|YP_003357950.1| - 0.027 14.1 0.0 0.034 13.9 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin domain CDP-OH_P_transf PF01066.21 gi|282165566|ref|YP_003357951.1| - 4.6e-16 59.3 1.2 4.6e-16 59.3 1.2 2.2 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase MgtC PF02308.16 gi|282165566|ref|YP_003357951.1| - 5.1 7.5 10.1 2.6 8.4 2.1 2.4 2 1 0 2 2 2 0 MgtC family Putative_PNPOx PF01243.20 gi|282165567|ref|YP_003357952.1| - 4e-09 36.5 0.0 5.6e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|282165567|ref|YP_003357952.1| - 0.0091 16.0 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase MMACHC PF16690.5 gi|282165567|ref|YP_003357952.1| - 0.1 12.2 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Methylmalonic aciduria and homocystinuria type C family HrcA_DNA-bdg PF03444.15 gi|282165568|ref|YP_003357953.1| - 3.4e-36 122.7 0.1 7.3e-36 121.7 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|282165568|ref|YP_003357953.1| - 1.4e-21 76.7 3.8 8.5e-11 42.1 0.1 2.8 3 0 0 3 3 3 2 CBS domain Rrf2 PF02082.20 gi|282165568|ref|YP_003357953.1| - 1.8e-08 34.6 0.1 3.6e-08 33.6 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|282165568|ref|YP_003357953.1| - 3.4e-08 33.3 0.0 6.2e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|282165568|ref|YP_003357953.1| - 0.00045 19.9 0.0 0.00084 19.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|282165568|ref|YP_003357953.1| - 0.00099 19.0 0.0 0.003 17.4 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|282165568|ref|YP_003357953.1| - 0.0014 18.4 0.0 0.0034 17.2 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|282165568|ref|YP_003357953.1| - 0.0024 17.4 0.3 0.0068 15.9 0.3 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|282165568|ref|YP_003357953.1| - 0.0046 17.0 0.0 0.012 15.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|282165568|ref|YP_003357953.1| - 0.049 13.4 0.5 0.14 11.9 0.1 2.0 2 0 0 2 2 2 0 LexA DNA binding domain HTH_5 PF01022.20 gi|282165568|ref|YP_003357953.1| - 0.12 12.2 0.0 0.33 10.9 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family DeoC PF01791.9 gi|282165569|ref|YP_003357954.1| - 6.2e-36 124.2 0.0 7.3e-36 124.0 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase YdjM PF04307.14 gi|282165571|ref|YP_003357956.1| - 1.4e-13 50.6 9.3 2.4e-13 49.8 9.3 1.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4184 PF13803.6 gi|282165571|ref|YP_003357956.1| - 0.0075 16.0 1.6 1.4 8.5 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4184) Phage_holin_4_1 PF05105.12 gi|282165571|ref|YP_003357956.1| - 0.066 13.4 0.2 0.087 13.0 0.2 1.2 1 0 0 1 1 1 0 Bacteriophage holin family Phage_holin_3_1 PF05106.12 gi|282165571|ref|YP_003357956.1| - 0.18 12.2 1.7 0.22 12.0 0.2 1.9 1 1 1 2 2 2 0 Phage holin family (Lysis protein S) DUF2628 PF10947.8 gi|282165571|ref|YP_003357956.1| - 0.46 10.9 3.8 3 8.3 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2628) TIM PF00121.18 gi|282165572|ref|YP_003357957.1| - 3e-10 39.9 0.0 4.7e-10 39.2 0.0 1.3 1 1 0 1 1 1 1 Triosephosphate isomerase NMO PF03060.15 gi|282165572|ref|YP_003357957.1| - 1.8e-05 24.3 0.1 2.6e-05 23.8 0.1 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|282165572|ref|YP_003357957.1| - 2.6e-05 23.7 0.3 3.9e-05 23.1 0.3 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|282165572|ref|YP_003357957.1| - 0.017 14.1 0.6 0.028 13.4 0.6 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|282165572|ref|YP_003357957.1| - 0.058 12.8 0.0 0.073 12.5 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein PrpR_N PF06506.11 gi|282165572|ref|YP_003357957.1| - 0.1 12.2 0.2 3.4 7.2 0.0 2.6 3 0 0 3 3 3 0 Propionate catabolism activator Hydrolase_like PF13242.6 gi|282165572|ref|YP_003357957.1| - 0.12 12.4 0.1 2.9 8.0 0.1 2.2 2 0 0 2 2 2 0 HAD-hyrolase-like FMN_red PF03358.15 gi|282165573|ref|YP_003357958.1| - 2.6e-44 150.7 0.0 3.3e-44 150.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|282165573|ref|YP_003357958.1| - 4.9e-12 46.0 0.0 8e-12 45.3 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold Fae PF08714.11 gi|282165574|ref|YP_003357959.1| - 2.7e-69 232.1 1.5 7.5e-69 230.7 1.5 1.8 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|282165574|ref|YP_003357959.1| - 1.8e-20 73.5 4.6 2.3e-20 73.2 3.7 1.7 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|282165574|ref|YP_003357959.1| - 9.4e-07 28.4 0.7 1.6e-06 27.6 0.7 1.4 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 gi|282165574|ref|YP_003357959.1| - 9.3e-05 22.3 0.2 0.0002 21.2 0.2 1.6 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain HTH_24 PF13412.6 gi|282165575|ref|YP_003357960.1| - 1.7e-20 72.3 0.0 5.8e-11 41.8 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|282165575|ref|YP_003357960.1| - 8.9e-07 28.6 0.0 0.0037 17.0 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|282165575|ref|YP_003357960.1| - 2.6e-05 24.0 0.0 0.35 10.8 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|282165575|ref|YP_003357960.1| - 0.0011 19.0 0.0 0.18 11.9 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|282165575|ref|YP_003357960.1| - 0.0014 18.5 0.0 0.0072 16.2 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|282165575|ref|YP_003357960.1| - 0.003 17.4 0.0 0.17 11.8 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|282165575|ref|YP_003357960.1| - 0.0041 17.5 0.1 0.0088 16.4 0.1 1.5 1 0 0 1 1 1 1 FaeA-like protein HTH_Crp_2 PF13545.6 gi|282165575|ref|YP_003357960.1| - 0.0043 17.0 0.0 0.033 14.2 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Mnd1 PF03962.15 gi|282165575|ref|YP_003357960.1| - 0.0046 17.2 0.1 0.75 10.1 0.2 2.6 2 1 0 2 2 2 1 Mnd1 HTH domain TBPIP PF07106.13 gi|282165575|ref|YP_003357960.1| - 0.017 15.0 0.2 5.4 7.0 0.0 2.3 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain HTH_5 PF01022.20 gi|282165575|ref|YP_003357960.1| - 0.033 14.1 0.0 0.31 11.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family EphA2_TM PF14575.6 gi|282165575|ref|YP_003357960.1| - 0.036 15.0 0.8 0.15 13.0 0.0 2.1 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain HTH_AsnC-type PF13404.6 gi|282165575|ref|YP_003357960.1| - 0.039 13.8 0.0 0.4 10.5 0.0 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain RP-C PF03428.13 gi|282165575|ref|YP_003357960.1| - 0.18 11.4 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 Replication protein C N-terminal domain Gram_pos_anchor PF00746.21 gi|282165575|ref|YP_003357960.1| - 1.4 8.9 7.4 1.1 9.3 0.3 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Elf1 PF05129.13 gi|282165576|ref|YP_003357961.1| - 0.018 15.1 0.3 0.028 14.5 0.3 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_10 PF10058.9 gi|282165576|ref|YP_003357961.1| - 0.036 13.8 0.6 0.22 11.3 0.0 2.3 3 0 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein DM PF00751.18 gi|282165576|ref|YP_003357961.1| - 0.063 13.2 1.8 0.16 11.9 1.8 1.6 1 0 0 1 1 1 0 DM DNA binding domain Trp_syntA PF00290.20 gi|282165577|ref|YP_003357962.1| - 1.3e-81 273.2 0.0 1.6e-81 273.0 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|282165577|ref|YP_003357962.1| - 0.00085 18.9 0.3 0.0035 16.8 0.3 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|282165577|ref|YP_003357962.1| - 0.0024 17.2 3.1 0.0054 16.1 3.1 1.5 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG PALP PF00291.25 gi|282165578|ref|YP_003357963.1| - 2.5e-46 158.4 1.6 2.9e-46 158.2 1.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.15 gi|282165578|ref|YP_003357963.1| - 0.099 12.5 0.2 0.16 11.8 0.2 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein PRAI PF00697.22 gi|282165579|ref|YP_003357964.1| - 2.2e-36 125.5 0.0 2.5e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ThiG PF05690.14 gi|282165579|ref|YP_003357964.1| - 0.02 14.2 2.7 1 8.6 0.2 2.5 2 2 0 2 2 2 0 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|282165579|ref|YP_003357964.1| - 0.024 14.0 0.4 0.036 13.4 0.4 1.5 1 1 0 1 1 1 0 Thiamine monophosphate synthase His_biosynth PF00977.21 gi|282165579|ref|YP_003357964.1| - 0.027 14.0 0.0 0.1 12.0 0.0 2.0 2 1 0 2 2 2 0 Histidine biosynthesis protein QRPTase_C PF01729.19 gi|282165579|ref|YP_003357964.1| - 0.052 13.3 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Glycos_transf_3 PF00591.21 gi|282165580|ref|YP_003357965.1| - 1.5e-96 322.9 1.3 1.6e-96 322.8 0.7 1.3 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|282165580|ref|YP_003357965.1| - 2.8e-20 71.9 0.4 9.7e-20 70.2 0.2 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain GATase PF00117.28 gi|282165581|ref|YP_003357966.1| - 7.1e-51 172.7 0.0 8.6e-51 172.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|282165581|ref|YP_003357966.1| - 1.8e-11 44.2 0.1 8.2e-11 42.1 0.1 1.9 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|282165582|ref|YP_003357967.1| - 3.1e-97 325.2 0.0 5.6e-97 324.3 0.0 1.4 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|282165582|ref|YP_003357967.1| - 2.3e-29 102.5 0.0 4.4e-28 98.3 0.0 2.7 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region IGPS PF00218.21 gi|282165583|ref|YP_003357968.1| - 5.9e-58 196.0 0.0 6.8e-58 195.8 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase MMPL PF03176.15 gi|282165584|ref|YP_003357969.1| - 9.9e-98 327.1 19.4 1e-49 169.3 9.4 3.0 3 0 0 3 3 3 2 MMPL family ACR_tran PF00873.19 gi|282165584|ref|YP_003357969.1| - 3.7e-10 38.2 26.9 2.5e-08 32.1 9.9 2.4 2 1 0 2 2 2 2 AcrB/AcrD/AcrF family Sterol-sensing PF12349.8 gi|282165584|ref|YP_003357969.1| - 3.4e-05 23.7 26.9 0.019 14.8 9.8 3.5 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|282165584|ref|YP_003357969.1| - 0.0095 14.1 31.3 0.048 11.7 8.4 2.8 3 0 0 3 3 3 2 Patched family T3SSipB PF16535.5 gi|282165584|ref|YP_003357969.1| - 0.075 13.5 0.3 0.46 10.9 0.1 2.4 2 0 0 2 2 2 0 Type III cell invasion protein SipB LMF1 PF06762.14 gi|282165584|ref|YP_003357969.1| - 4.7 6.2 7.4 1 8.4 1.1 2.2 2 0 0 2 2 2 0 Lipase maturation factor TetR_N PF00440.23 gi|282165585|ref|YP_003357970.1| - 8.4e-18 63.9 0.0 1.3e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|282165585|ref|YP_003357970.1| - 6.2e-06 26.5 0.0 1.1e-05 25.6 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|282165585|ref|YP_003357970.1| - 0.0024 18.0 0.0 0.0045 17.1 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase TetR_C_27 PF17935.1 gi|282165585|ref|YP_003357970.1| - 0.011 15.8 0.0 0.065 13.3 0.0 2.2 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain CbiZ PF01955.18 gi|282165586|ref|YP_003357971.1| - 2.8e-39 135.2 0.4 3.7e-39 134.8 0.4 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase zf-like PF04071.12 gi|282165586|ref|YP_003357971.1| - 8.6e-26 89.7 9.4 1.8e-25 88.7 9.4 1.5 1 0 0 1 1 1 1 Cysteine-rich small domain Peripla_BP_2 PF01497.18 gi|282165587|ref|YP_003357972.1| - 1.5e-37 129.4 0.3 1.9e-37 129.1 0.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ATP-grasp_5 PF13549.6 gi|282165588|ref|YP_003357973.1| - 1e-78 263.8 0.0 1.6e-78 263.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|282165588|ref|YP_003357973.1| - 5.6e-55 184.9 0.4 2.2e-54 183.0 0.3 2.1 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|282165588|ref|YP_003357973.1| - 2.9e-26 92.2 0.1 1.4e-25 90.0 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|282165588|ref|YP_003357973.1| - 1.2e-13 51.6 0.1 3.6e-13 50.0 0.1 1.9 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|282165588|ref|YP_003357973.1| - 0.049 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|282165588|ref|YP_003357973.1| - 0.098 12.1 0.0 0.27 10.7 0.0 1.7 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|282165588|ref|YP_003357973.1| - 0.13 11.8 0.0 0.29 10.7 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain Autoind_synth PF00765.17 gi|282165588|ref|YP_003357973.1| - 0.14 11.7 0.1 1.5 8.3 0.0 2.5 3 0 0 3 3 3 0 Autoinducer synthase MS_channel PF00924.18 gi|282165589|ref|YP_003357974.1| - 1e-14 54.6 2.4 2.9e-14 53.1 2.4 1.7 1 1 0 1 1 1 1 Mechanosensitive ion channel ExoD PF06055.12 gi|282165589|ref|YP_003357974.1| - 0.0077 15.6 2.4 0.012 15.0 2.4 1.3 1 0 0 1 1 1 1 Exopolysaccharide synthesis, ExoD DHFR_2 PF06442.11 gi|282165589|ref|YP_003357974.1| - 0.041 13.7 0.1 0.24 11.2 0.0 2.0 2 0 0 2 2 2 0 R67 dihydrofolate reductase Ham1p_like PF01725.16 gi|282165590|ref|YP_003357975.1| - 2.6e-46 157.9 0.0 3e-46 157.7 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Lactamase_B PF00753.27 gi|282165591|ref|YP_003357976.1| - 2.5e-10 40.7 0.0 8.5e-10 39.0 0.0 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.25 gi|282165591|ref|YP_003357976.1| - 2.7e-09 37.4 0.0 4.6e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.7 gi|282165591|ref|YP_003357976.1| - 0.00018 21.1 0.0 0.00034 20.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HEAT_2 PF13646.6 gi|282165592|ref|YP_003357977.1| - 6e-53 177.2 23.5 7.9e-17 61.4 4.9 3.6 1 1 3 4 4 4 4 HEAT repeats HEAT_PBS PF03130.16 gi|282165592|ref|YP_003357977.1| - 1.1e-21 75.2 12.4 0.0016 18.9 0.1 6.5 6 0 0 6 6 6 5 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|282165592|ref|YP_003357977.1| - 1e-19 68.9 4.8 0.036 14.3 0.1 7.3 7 0 0 7 7 7 6 HEAT repeat HEAT_EZ PF13513.6 gi|282165592|ref|YP_003357977.1| - 4.6e-10 39.8 14.2 0.027 15.0 0.2 5.9 5 2 0 5 5 5 4 HEAT-like repeat Cnd1 PF12717.7 gi|282165592|ref|YP_003357977.1| - 6.9e-08 32.7 0.1 0.55 10.3 0.0 4.6 1 1 3 4 4 4 4 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|282165592|ref|YP_003357977.1| - 1.6e-05 24.8 0.2 1.7 8.8 0.0 5.3 5 1 2 7 7 7 1 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|282165592|ref|YP_003357977.1| - 2.8e-05 22.9 0.0 0.039 12.5 0.0 3.3 1 1 1 2 2 2 2 Adaptin N terminal region RTP1_C1 PF10363.9 gi|282165592|ref|YP_003357977.1| - 4.5e-05 23.6 0.0 0.0021 18.2 0.0 3.6 1 1 1 2 2 2 2 Required for nuclear transport of RNA pol II C-terminus 1 RICTOR_M PF14666.6 gi|282165592|ref|YP_003357977.1| - 0.041 13.7 0.0 43 4.0 0.0 4.0 4 1 0 4 4 4 0 Rapamycin-insensitive companion of mTOR, middle domain Vac14_Fab1_bd PF12755.7 gi|282165592|ref|YP_003357977.1| - 0.1 13.2 0.0 73 4.0 0.0 4.1 3 2 1 4 4 4 0 Vacuolar 14 Fab1-binding region TetR_C_16 PF17920.1 gi|282165592|ref|YP_003357977.1| - 0.11 12.8 5.5 17 5.7 0.5 3.5 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain RasGEF_N_2 PF14663.6 gi|282165592|ref|YP_003357977.1| - 0.2 12.1 0.0 39 4.7 0.0 3.7 3 2 1 4 4 4 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain HEM4 PF02602.15 gi|282165593|ref|YP_003357978.1| - 5e-48 163.5 0.1 6.1e-48 163.2 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD MGS PF02142.22 gi|282165593|ref|YP_003357978.1| - 0.014 15.5 0.0 3.7 7.8 0.0 2.6 3 0 0 3 3 3 0 MGS-like domain TP_methylase PF00590.20 gi|282165594|ref|YP_003357979.1| - 7.9e-56 189.3 1.4 9.1e-56 189.2 1.4 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|282165594|ref|YP_003357979.1| - 0.16 12.3 0.2 0.5 10.7 0.1 2.0 1 1 0 1 1 1 0 Radical SAM superfamily Porphobil_deam PF01379.20 gi|282165595|ref|YP_003357980.1| - 2.6e-68 229.6 0.0 3.7e-68 229.1 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|282165595|ref|YP_003357980.1| - 1.4e-10 41.4 0.1 2.5e-10 40.6 0.1 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.21 gi|282165596|ref|YP_003357981.1| - 7e-65 219.3 0.0 9e-65 218.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|282165596|ref|YP_003357981.1| - 1.1e-07 31.3 0.0 1.7e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II ALAD PF00490.21 gi|282165597|ref|YP_003357982.1| - 8.4e-143 475.3 0.2 9.4e-143 475.1 0.2 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Shikimate_DH PF01488.20 gi|282165598|ref|YP_003357983.1| - 9.7e-39 132.6 0.2 1.5e-38 131.9 0.2 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|282165598|ref|YP_003357983.1| - 3.5e-32 111.2 0.0 9.1e-32 109.8 0.0 1.7 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|282165598|ref|YP_003357983.1| - 5.6e-16 58.8 0.0 1.3e-15 57.6 0.0 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|282165598|ref|YP_003357983.1| - 3.8e-08 33.8 0.3 1e-07 32.4 0.3 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|282165598|ref|YP_003357983.1| - 0.00012 22.5 0.2 0.00023 21.6 0.2 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Glu_dehyd_C PF16912.5 gi|282165598|ref|YP_003357983.1| - 0.00029 20.4 0.2 0.00049 19.6 0.2 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Sacchrp_dh_NADP PF03435.18 gi|282165598|ref|YP_003357983.1| - 0.00057 20.2 0.3 0.0013 19.0 0.3 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|282165598|ref|YP_003357983.1| - 0.0014 18.8 0.1 0.0027 17.9 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|282165598|ref|YP_003357983.1| - 0.0019 17.6 0.1 0.0033 16.8 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|282165598|ref|YP_003357983.1| - 0.0036 16.6 0.9 0.17 11.2 0.8 2.8 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain OCD_Mu_crystall PF02423.15 gi|282165598|ref|YP_003357983.1| - 0.0041 16.1 0.4 0.0072 15.3 0.3 1.4 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family DapB_N PF01113.20 gi|282165598|ref|YP_003357983.1| - 0.0047 17.0 0.2 0.04 14.0 0.2 2.3 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus TrkA_N PF02254.18 gi|282165598|ref|YP_003357983.1| - 0.018 15.3 1.0 0.51 10.6 0.4 3.0 2 1 1 3 3 3 0 TrkA-N domain ApbA PF02558.16 gi|282165598|ref|YP_003357983.1| - 0.022 14.4 0.2 0.044 13.4 0.2 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|282165598|ref|YP_003357983.1| - 0.2 11.0 0.9 0.36 10.1 0.9 1.3 1 0 0 1 1 1 0 ThiF family HlyD_D4 PF16572.5 gi|282165598|ref|YP_003357983.1| - 0.64 9.9 3.8 2.9 7.8 0.0 3.1 3 0 0 3 3 3 0 Long alpha hairpin domain of cation efflux system protein, CusB NAD_binding_7 PF13241.6 gi|282165599|ref|YP_003357984.1| - 1.3e-21 77.0 0.0 5.3e-21 75.0 0.0 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|282165599|ref|YP_003357984.1| - 8.1e-06 25.2 0.8 2.4e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central CysG_dimeriser PF10414.9 gi|282165599|ref|YP_003357984.1| - 0.0035 17.0 2.4 0.0035 17.0 2.4 1.7 2 0 0 2 2 2 1 Sirohaem synthase dimerisation region DUF4013 PF13197.6 gi|282165600|ref|YP_003357985.1| - 8.3e-25 87.6 26.6 1e-24 87.3 25.5 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) NADH_u_ox_C PF12853.7 gi|282165600|ref|YP_003357985.1| - 0.068 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit Peptidase_M20 PF01546.28 gi|282165601|ref|YP_003357986.1| - 6.5e-35 120.7 0.1 7.9e-35 120.4 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|282165601|ref|YP_003357986.1| - 1.8e-19 69.6 0.0 4.1e-19 68.5 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain MoCF_biosynth PF00994.24 gi|282165602|ref|YP_003357987.1| - 5.7e-29 100.6 0.0 6.6e-29 100.4 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain PolC_DP2 PF03833.13 gi|282165603|ref|YP_003357988.1| - 0 1272.2 0.0 0 1269.5 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 DZR PF12773.7 gi|282165603|ref|YP_003357988.1| - 4.1 7.5 18.5 1.2 9.2 1.7 3.2 2 1 0 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|282165603|ref|YP_003357988.1| - 4.2 7.4 11.9 1.2 9.2 0.3 2.7 2 0 0 2 2 2 0 zinc-ribbons NiFe_hyd_SSU_C PF14720.6 gi|282165604|ref|YP_003357989.1| - 5e-29 100.5 1.8 5e-29 100.5 1.8 2.1 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 gi|282165604|ref|YP_003357989.1| - 4e-24 84.9 0.4 1.2e-23 83.4 0.0 1.8 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.9 gi|282165604|ref|YP_003357989.1| - 0.0037 17.0 6.3 0.0037 17.0 6.3 3.2 2 1 1 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|282165604|ref|YP_003357989.1| - 3.6 7.0 7.0 0.25 10.7 0.3 2.5 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NiFeSe_Hases PF00374.19 gi|282165605|ref|YP_003357990.1| - 3e-84 283.8 0.0 7.7e-56 190.0 0.0 3.0 1 1 1 3 3 3 3 Nickel-dependent hydrogenase Ni_hydr_CYTB PF01292.20 gi|282165606|ref|YP_003357991.1| - 2.2e-10 40.5 12.5 3.2e-10 39.9 12.5 1.2 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.6 gi|282165606|ref|YP_003357991.1| - 0.00021 21.8 15.1 0.16 12.6 9.4 2.7 2 1 0 2 2 2 2 Domain of unknown function (DUF4405) NTP_transf_3 PF12804.7 gi|282165607|ref|YP_003357992.1| - 1.3e-34 119.8 0.1 1.7e-34 119.5 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|282165607|ref|YP_003357992.1| - 0.052 13.4 0.0 0.11 12.5 0.0 1.6 1 1 0 1 1 1 0 Cytidylyltransferase DUF92 PF01940.16 gi|282165608|ref|YP_003357993.1| - 6e-56 189.5 13.6 6e-56 189.5 13.6 2.6 2 2 0 2 2 2 1 Integral membrane protein DUF92 Prenyltransf PF01255.19 gi|282165609|ref|YP_003357994.1| - 1.1e-29 103.6 0.0 4.7e-27 95.0 0.0 2.1 2 0 0 2 2 2 2 Putative undecaprenyl diphosphate synthase LPG_synthase_TM PF03706.13 gi|282165610|ref|YP_003357995.1| - 1.4e-44 152.9 38.8 1.7e-44 152.6 38.8 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DNase-RNase PF02577.14 gi|282165611|ref|YP_003357996.1| - 3.6e-42 143.1 0.9 4e-42 142.9 0.9 1.0 1 0 0 1 1 1 1 Bifunctional nuclease GTP_EFTU PF00009.27 gi|282165613|ref|YP_003357998.1| - 3.4e-10 39.8 0.0 2.4e-09 37.0 0.0 2.1 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Roc PF08477.13 gi|282165613|ref|YP_003357998.1| - 2.2e-06 27.9 0.0 2.9e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|282165613|ref|YP_003357998.1| - 3.4e-06 26.7 0.0 4.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Ras family Arf PF00025.21 gi|282165613|ref|YP_003357998.1| - 3.3e-05 23.4 0.0 5.2e-05 22.8 0.0 1.4 1 1 0 1 1 1 1 ADP-ribosylation factor family ATP_bind_1 PF03029.17 gi|282165613|ref|YP_003357998.1| - 0.00021 21.1 0.0 0.0011 18.8 0.0 2.1 1 1 2 3 3 3 1 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.23 gi|282165613|ref|YP_003357998.1| - 0.0011 19.0 0.0 0.0015 18.6 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.10 gi|282165613|ref|YP_003357998.1| - 0.0013 18.2 0.0 0.0019 17.6 0.0 1.3 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 gi|282165613|ref|YP_003357998.1| - 0.011 15.7 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Peptidase_M50 PF02163.22 gi|282165614|ref|YP_003357999.1| - 1.3e-13 50.9 4.1 1.5e-06 27.6 0.1 2.1 1 1 1 2 2 2 2 Peptidase family M50 Vut_1 PF02592.15 gi|282165614|ref|YP_003357999.1| - 3.3 8.0 17.0 1.3 9.3 9.9 3.0 1 1 1 2 2 2 0 Putative vitamin uptake transporter TatC PF00902.18 gi|282165615|ref|YP_003358000.1| - 1.5e-46 158.8 20.1 1.9e-46 158.5 20.1 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Phage_holin_3_1 PF05106.12 gi|282165615|ref|YP_003358000.1| - 0.094 13.2 0.0 0.25 11.8 0.0 1.6 1 0 0 1 1 1 0 Phage holin family (Lysis protein S) DUF3040 PF11239.8 gi|282165616|ref|YP_003358001.1| - 0.015 15.6 1.7 0.023 14.9 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Tmemb_161AB PF10268.9 gi|282165617|ref|YP_003358002.1| - 0.21 10.2 0.1 0.28 9.8 0.1 1.0 1 0 0 1 1 1 0 Predicted transmembrane protein 161AB DUF3852 PF12963.7 gi|282165618|ref|YP_003358003.1| - 0.039 14.3 0.5 0.066 13.6 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3852) DUF4519 PF15012.6 gi|282165619|ref|YP_003358004.1| - 0.4 10.9 1.0 0.67 10.2 1.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) MazG PF03819.17 gi|282165621|ref|YP_003358006.1| - 0.029 14.5 0.1 0.076 13.2 0.1 1.7 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain CarboxypepD_reg PF13620.6 gi|282165623|ref|YP_003358008.1| - 3.4e-12 46.5 11.3 1.3e-05 25.4 0.3 3.5 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain SdrD_B PF17210.3 gi|282165623|ref|YP_003358008.1| - 7.4e-08 32.6 2.9 0.015 15.5 0.3 3.5 3 1 0 3 3 3 2 SdrD B-like domain CarbopepD_reg_2 PF13715.6 gi|282165623|ref|YP_003358008.1| - 1.1e-07 31.8 5.7 0.0014 18.6 0.3 4.1 3 1 0 3 3 3 2 CarboxypepD_reg-like domain Dioxygenase_C PF00775.21 gi|282165623|ref|YP_003358008.1| - 1.1e-05 24.9 0.0 0.04 13.4 0.0 2.4 2 0 0 2 2 2 2 Dioxygenase bMG3 PF11974.8 gi|282165623|ref|YP_003358008.1| - 0.0012 18.9 0.6 3 7.9 0.0 3.3 2 1 0 2 2 2 2 Bacterial alpha-2-macroglobulin MG3 domain Big_1 PF02369.16 gi|282165623|ref|YP_003358008.1| - 0.0026 17.7 9.3 0.1 12.6 0.5 3.0 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 1) TTR-52 PF01060.23 gi|282165623|ref|YP_003358008.1| - 0.0043 17.7 0.1 3.3 8.5 0.0 2.3 2 0 0 2 2 2 2 Transthyretin-like family DUF1416 PF07210.12 gi|282165623|ref|YP_003358008.1| - 0.0084 16.0 0.2 2.1 8.3 0.0 3.2 3 0 0 3 3 3 1 Protein of unknown function (DUF1416) SpaA PF17802.1 gi|282165623|ref|YP_003358008.1| - 0.84 10.0 4.6 1.9 8.9 0.1 2.9 2 1 0 2 2 2 0 Prealbumin-like fold domain Hemerythrin PF01814.23 gi|282165624|ref|YP_003358009.1| - 1.7e-17 64.3 2.8 2.4e-14 54.1 0.9 2.0 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain Aldolase_II PF00596.21 gi|282165625|ref|YP_003358010.1| - 3.4e-31 108.6 0.0 3.8e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Methyltransf_11 PF08241.12 gi|282165626|ref|YP_003358011.1| - 3.1e-21 75.8 0.1 4.9e-21 75.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|282165626|ref|YP_003358011.1| - 4.5e-19 68.9 0.2 1.1e-18 67.7 0.1 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|282165626|ref|YP_003358011.1| - 1.3e-16 60.9 0.0 1.6e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282165626|ref|YP_003358011.1| - 3.3e-12 47.0 0.1 6.1e-12 46.1 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282165626|ref|YP_003358011.1| - 2.2e-10 40.5 0.0 7.5e-10 38.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|282165626|ref|YP_003358011.1| - 3.5e-07 30.0 0.0 5.2e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 gi|282165626|ref|YP_003358011.1| - 4e-06 26.3 0.0 1.2e-05 24.8 0.0 1.7 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|282165626|ref|YP_003358011.1| - 4.8e-05 23.3 0.0 6.7e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|282165626|ref|YP_003358011.1| - 0.00046 19.6 0.0 0.00094 18.6 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.11 gi|282165626|ref|YP_003358011.1| - 0.00058 19.6 0.0 0.0014 18.3 0.0 1.7 1 1 1 2 2 2 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.14 gi|282165626|ref|YP_003358011.1| - 0.0048 16.5 0.0 0.01 15.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain PCMT PF01135.19 gi|282165626|ref|YP_003358011.1| - 0.012 15.4 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|282165626|ref|YP_003358011.1| - 0.018 14.4 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|282165626|ref|YP_003358011.1| - 0.02 14.4 0.0 0.12 11.8 0.0 1.9 2 0 0 2 2 2 0 Putative methyltransferase AdoMet_MTase PF07757.13 gi|282165626|ref|YP_003358011.1| - 0.02 15.2 0.0 0.034 14.5 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase FtsJ PF01728.19 gi|282165626|ref|YP_003358011.1| - 0.028 14.6 0.0 0.095 12.8 0.0 2.1 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_9 PF08003.11 gi|282165626|ref|YP_003358011.1| - 0.028 13.4 0.0 0.038 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|282165626|ref|YP_003358011.1| - 0.033 13.6 0.0 0.057 12.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) CheR PF01739.18 gi|282165626|ref|YP_003358011.1| - 0.14 11.6 0.0 1.2 8.6 0.0 2.3 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_32 PF13679.6 gi|282165626|ref|YP_003358011.1| - 0.23 11.5 0.0 0.28 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain LAMTOR5 PF16672.5 gi|282165627|ref|YP_003358012.1| - 0.15 12.0 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Ragulator complex protein LAMTOR5 HAD_2 PF13419.6 gi|282165628|ref|YP_003358013.1| - 3.6e-17 63.0 0.0 4.6e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|282165628|ref|YP_003358013.1| - 2e-13 51.1 0.0 8e-13 49.2 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|282165628|ref|YP_003358013.1| - 2.4e-09 37.1 0.0 4.2e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|282165628|ref|YP_003358013.1| - 0.00095 19.6 0.1 0.0023 18.3 0.0 1.7 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|282165628|ref|YP_003358013.1| - 0.0096 16.0 0.0 0.037 14.1 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HhH-GPD PF00730.25 gi|282165629|ref|YP_003358014.1| - 1.1e-15 58.0 0.0 1.9e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|282165629|ref|YP_003358014.1| - 0.00028 20.6 0.1 0.0011 18.8 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF2400 PF09674.10 gi|282165629|ref|YP_003358014.1| - 0.043 13.8 1.2 0.11 12.4 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2400) DUF2117 PF09890.9 gi|282165630|ref|YP_003358015.1| - 3.1e-47 160.8 0.0 4.8e-47 160.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) DUF4265 PF14085.6 gi|282165630|ref|YP_003358015.1| - 0.091 12.7 0.1 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) DUF538 PF04398.12 gi|282165630|ref|YP_003358015.1| - 0.13 12.7 0.0 0.27 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF538 RNase_HII PF01351.18 gi|282165631|ref|YP_003358016.1| - 6.5e-48 163.2 0.1 7.4e-48 163.0 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII GTP_EFTU_D2 PF03144.25 gi|282165632|ref|YP_003358017.1| - 5e-10 39.6 0.2 4.1e-09 36.7 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|282165632|ref|YP_003358017.1| - 0.006 16.5 0.1 0.014 15.3 0.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|282165632|ref|YP_003358017.1| - 0.098 12.2 0.1 4.7 6.7 0.0 2.2 1 1 1 2 2 2 0 Elongation factor Tu GTP binding domain AAA_28 PF13521.6 gi|282165632|ref|YP_003358017.1| - 0.29 11.4 1.0 0.47 10.7 1.0 1.3 1 0 0 1 1 1 0 AAA domain Robl_LC7 PF03259.17 gi|282165633|ref|YP_003358018.1| - 2.1e-05 24.2 0.2 2.1e-05 24.2 0.2 1.6 2 1 0 2 2 2 1 Roadblock/LC7 domain tRNA-synt_2c PF01411.19 gi|282165634|ref|YP_003358019.1| - 1.2e-79 268.3 0.0 1.7e-79 267.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|282165634|ref|YP_003358019.1| - 4.9e-11 42.6 0.1 9.5e-11 41.6 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|282165634|ref|YP_003358019.1| - 0.057 12.7 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Glycyl-tRNA synthetase alpha subunit DUF3232 PF11554.8 gi|282165634|ref|YP_003358019.1| - 0.22 11.9 1.4 2.4 8.6 0.0 3.0 3 1 1 4 4 4 0 Protein of unknown function (DUF3232) CENP-F_leu_zip PF10473.9 gi|282165635|ref|YP_003358020.1| - 5.9e-06 26.4 9.4 0.002 18.2 2.1 2.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.8 gi|282165635|ref|YP_003358020.1| - 0.00028 21.0 6.6 0.0004 20.5 5.4 1.7 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding PspA_IM30 PF04012.12 gi|282165635|ref|YP_003358020.1| - 0.00056 19.6 3.1 0.00069 19.3 3.1 1.1 1 0 0 1 1 1 1 PspA/IM30 family DUF4763 PF15960.5 gi|282165635|ref|YP_003358020.1| - 0.00091 18.6 1.8 0.0012 18.2 1.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4763) SIKE PF05769.11 gi|282165635|ref|YP_003358020.1| - 0.0012 18.8 7.7 0.097 12.6 0.7 2.1 1 1 1 2 2 2 2 SIKE family DASH_Spc34 PF08657.10 gi|282165635|ref|YP_003358020.1| - 0.0022 17.8 2.5 0.0028 17.5 2.5 1.1 1 0 0 1 1 1 1 DASH complex subunit Spc34 AAA_13 PF13166.6 gi|282165635|ref|YP_003358020.1| - 0.0023 16.6 1.5 0.0025 16.6 1.5 1.0 1 0 0 1 1 1 1 AAA domain APG6_N PF17675.1 gi|282165635|ref|YP_003358020.1| - 0.0025 18.3 7.3 0.0033 17.9 7.3 1.2 1 0 0 1 1 1 1 Apg6 coiled-coil region YycI PF09648.10 gi|282165635|ref|YP_003358020.1| - 0.003 17.2 1.2 0.0035 17.0 1.2 1.2 1 0 0 1 1 1 1 YycH protein Fez1 PF06818.15 gi|282165635|ref|YP_003358020.1| - 0.0035 17.8 3.1 0.0048 17.4 3.1 1.2 1 0 0 1 1 1 1 Fez1 DUF724 PF05266.14 gi|282165635|ref|YP_003358020.1| - 0.0062 16.4 5.1 0.0084 15.9 5.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF724) Csm1_N PF18504.1 gi|282165635|ref|YP_003358020.1| - 0.0082 16.5 5.2 0.022 15.1 3.5 2.3 1 1 2 3 3 3 1 Csm1 N-terminal domain HALZ PF02183.18 gi|282165635|ref|YP_003358020.1| - 0.012 15.8 0.3 0.012 15.8 0.3 1.9 2 0 0 2 2 2 0 Homeobox associated leucine zipper Spc24 PF08286.11 gi|282165635|ref|YP_003358020.1| - 0.014 15.6 4.3 0.058 13.6 4.3 2.0 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Atg14 PF10186.9 gi|282165635|ref|YP_003358020.1| - 0.016 14.3 3.4 0.02 14.0 3.4 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 TMF_DNA_bd PF12329.8 gi|282165635|ref|YP_003358020.1| - 0.018 15.0 7.3 0.018 15.0 7.3 2.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Lectin_N PF03954.14 gi|282165635|ref|YP_003358020.1| - 0.022 14.5 0.9 0.036 13.8 0.9 1.4 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain UPF0242 PF06785.11 gi|282165635|ref|YP_003358020.1| - 0.025 14.7 3.5 0.031 14.4 3.5 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF4472 PF14739.6 gi|282165635|ref|YP_003358020.1| - 0.025 15.3 4.1 0.038 14.7 3.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4472) DUF3450 PF11932.8 gi|282165635|ref|YP_003358020.1| - 0.026 13.8 4.0 0.035 13.4 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) HOOK PF05622.12 gi|282165635|ref|YP_003358020.1| - 0.026 12.7 7.0 0.032 12.4 7.0 1.0 1 0 0 1 1 1 0 HOOK protein SlyX PF04102.12 gi|282165635|ref|YP_003358020.1| - 0.029 15.0 2.3 0.22 12.2 1.8 2.4 1 1 1 2 2 2 0 SlyX ATG16 PF08614.11 gi|282165635|ref|YP_003358020.1| - 0.029 14.6 9.2 0.093 12.9 8.9 1.8 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DivIC PF04977.15 gi|282165635|ref|YP_003358020.1| - 0.032 14.0 9.3 0.044 13.6 2.1 2.7 1 1 1 2 2 2 0 Septum formation initiator Cnn_1N PF07989.11 gi|282165635|ref|YP_003358020.1| - 0.047 13.8 4.4 0.081 13.1 4.4 1.5 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 GAS PF13851.6 gi|282165635|ref|YP_003358020.1| - 0.073 12.4 7.0 0.15 11.4 7.0 1.5 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cas6 PF09559.10 gi|282165635|ref|YP_003358020.1| - 0.088 12.8 0.3 0.11 12.4 0.3 1.2 1 0 0 1 1 1 0 Cas6 Crispr KLRAQ PF10205.9 gi|282165635|ref|YP_003358020.1| - 0.09 13.0 4.8 0.15 12.3 4.8 1.5 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein DUF3138 PF11336.8 gi|282165635|ref|YP_003358020.1| - 0.13 10.9 0.1 0.18 10.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) DUF4201 PF13870.6 gi|282165635|ref|YP_003358020.1| - 0.22 11.2 8.2 0.4 10.4 4.3 2.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) GBP_C PF02841.14 gi|282165635|ref|YP_003358020.1| - 0.22 10.9 6.6 1.7 8.0 2.0 2.0 1 1 1 2 2 2 0 Guanylate-binding protein, C-terminal domain DUF641 PF04859.12 gi|282165635|ref|YP_003358020.1| - 0.25 11.7 6.1 4.8 7.5 0.2 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) EzrA PF06160.12 gi|282165635|ref|YP_003358020.1| - 0.27 9.4 7.5 0.34 9.0 7.5 1.0 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Spc42p PF11544.8 gi|282165635|ref|YP_003358020.1| - 0.32 11.0 6.5 1.8 8.6 4.6 2.9 1 1 0 1 1 1 0 Spindle pole body component Spc42p FlaC_arch PF05377.11 gi|282165635|ref|YP_003358020.1| - 0.46 10.9 3.6 0.29 11.5 1.2 2.0 2 1 0 2 2 1 0 Flagella accessory protein C (FlaC) DUF4140 PF13600.6 gi|282165635|ref|YP_003358020.1| - 0.68 10.4 8.0 2 8.9 5.8 2.4 2 1 0 2 2 1 0 N-terminal domain of unknown function (DUF4140) Fib_alpha PF08702.10 gi|282165635|ref|YP_003358020.1| - 0.88 9.8 5.7 4.3 7.5 0.2 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4200 PF13863.6 gi|282165635|ref|YP_003358020.1| - 1.2 9.5 8.8 13 6.2 6.5 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) TMPIT PF07851.13 gi|282165635|ref|YP_003358020.1| - 1.4 8.1 3.5 1.7 7.8 3.5 1.1 1 0 0 1 1 1 0 TMPIT-like protein YabA PF06156.13 gi|282165635|ref|YP_003358020.1| - 1.6 9.4 4.8 42 4.9 4.7 2.2 1 1 0 1 1 1 0 Initiation control protein YabA Gln-synt_C PF00120.24 gi|282165636|ref|YP_003358021.1| - 3.2e-139 463.8 0.0 3.7e-139 463.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|282165636|ref|YP_003358021.1| - 5.8e-33 112.5 0.1 1.1e-32 111.6 0.1 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|282165636|ref|YP_003358021.1| - 0.031 14.1 0.0 0.6 10.0 0.0 2.4 1 1 0 1 1 1 0 Glutamine synthetase N-terminal domain OB_RNB PF08206.11 gi|282165636|ref|YP_003358021.1| - 0.083 12.6 0.8 2.6 7.8 0.0 2.7 3 0 0 3 3 3 0 Ribonuclease B OB domain DUF3515 PF12028.8 gi|282165637|ref|YP_003358022.1| - 0.0044 16.8 0.2 0.0059 16.3 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3515) Peptidase_A24 PF01478.18 gi|282165638|ref|YP_003358023.1| - 1.4e-12 47.9 8.2 2.2e-12 47.3 8.2 1.3 1 0 0 1 1 1 1 Type IV leader peptidase family DUF87 PF01935.17 gi|282165639|ref|YP_003358024.1| - 1.1e-13 51.9 0.0 1.2e-11 45.2 0.0 2.1 2 0 0 2 2 2 2 Helicase HerA, central domain DUF853 PF05872.12 gi|282165639|ref|YP_003358024.1| - 8.2e-08 31.3 0.0 5.4e-07 28.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|282165639|ref|YP_003358024.1| - 6.1e-05 22.1 0.0 0.0057 15.6 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.6 gi|282165639|ref|YP_003358024.1| - 0.033 14.5 0.0 5.3 7.3 0.0 2.6 3 0 0 3 3 3 0 AAA domain Zot PF05707.12 gi|282165639|ref|YP_003358024.1| - 0.052 13.2 0.0 0.12 12.0 0.0 1.5 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) Pribosyltran PF00156.27 gi|282165640|ref|YP_003358025.1| - 4.4e-25 88.1 0.0 7.7e-25 87.3 0.0 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|282165640|ref|YP_003358025.1| - 0.00092 18.7 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Rsm22 PF09243.10 gi|282165640|ref|YP_003358025.1| - 0.0028 17.0 0.0 0.0036 16.6 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 PRTase_2 PF15609.6 gi|282165640|ref|YP_003358025.1| - 0.0046 16.5 0.0 0.0077 15.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase DJ-1_PfpI PF01965.24 gi|282165641|ref|YP_003358026.1| - 3.3e-46 157.1 0.0 3.7e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|282165641|ref|YP_003358026.1| - 0.0034 17.1 0.0 0.006 16.3 0.0 1.5 1 1 0 1 1 1 1 ThiJ/PfpI family-like GATase PF00117.28 gi|282165641|ref|YP_003358026.1| - 0.0054 16.5 0.0 0.0061 16.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|282165641|ref|YP_003358026.1| - 0.012 15.2 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.6 gi|282165641|ref|YP_003358026.1| - 0.18 10.9 0.0 0.31 10.1 0.0 1.4 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain T2SSE PF00437.20 gi|282165642|ref|YP_003358027.1| - 1.4e-33 116.1 0.0 2e-33 115.6 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|282165642|ref|YP_003358027.1| - 0.0002 21.8 0.1 0.00053 20.4 0.1 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|282165642|ref|YP_003358027.1| - 0.053 13.0 0.0 0.089 12.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_29 PF13555.6 gi|282165642|ref|YP_003358027.1| - 0.057 13.2 0.4 0.13 12.0 0.4 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|282165642|ref|YP_003358027.1| - 0.17 12.1 0.0 0.46 10.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|282165642|ref|YP_003358027.1| - 0.19 11.3 0.0 0.32 10.6 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF815 PF05673.13 gi|282165642|ref|YP_003358027.1| - 0.22 10.6 0.0 0.4 9.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Big_1 PF02369.16 gi|282165644|ref|YP_003358029.1| - 0.00013 21.9 2.0 0.00013 21.9 2.0 1.9 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 gi|282165644|ref|YP_003358029.1| - 0.00062 20.0 1.7 0.003 17.8 1.7 2.1 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4307 PF14155.6 gi|282165644|ref|YP_003358029.1| - 0.011 15.5 0.7 0.017 15.0 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) MG4 PF17789.1 gi|282165644|ref|YP_003358029.1| - 0.049 13.8 0.1 0.11 12.6 0.1 1.7 1 0 0 1 1 1 0 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|282165644|ref|YP_003358029.1| - 0.31 11.4 6.6 0.25 11.7 2.9 2.2 1 1 1 2 2 2 0 Invasin, domain 3 DUF1174 PF06671.11 gi|282165644|ref|YP_003358029.1| - 1.3 8.8 4.3 0.56 10.0 0.5 2.1 2 0 0 2 2 2 0 Repeat of unknown function (DUF1174) Hydrolase_3 PF08282.12 gi|282165645|ref|YP_003358030.1| - 4.9e-29 101.8 0.0 7.7e-21 75.0 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|282165645|ref|YP_003358030.1| - 9.9e-08 32.5 1.7 3.1e-05 24.3 0.0 3.0 1 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|282165645|ref|YP_003358030.1| - 4.1e-06 26.5 0.0 7.4e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|282165645|ref|YP_003358030.1| - 0.0053 17.2 4.1 2.4 8.5 0.0 3.3 1 1 3 4 4 4 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|282165645|ref|YP_003358030.1| - 0.013 15.6 0.2 0.068 13.3 0.0 2.0 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|282165645|ref|YP_003358030.1| - 0.047 13.8 0.0 0.091 12.8 0.0 1.6 1 0 0 1 1 1 0 HAD-hyrolase-like Trehalose_PPase PF02358.16 gi|282165645|ref|YP_003358030.1| - 0.15 11.2 0.0 3.2 6.8 0.0 2.0 2 0 0 2 2 2 0 Trehalose-phosphatase TPR_6 PF13174.6 gi|282165645|ref|YP_003358030.1| - 0.28 11.9 6.1 2.5 8.9 0.7 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat Usp PF00582.26 gi|282165646|ref|YP_003358031.1| - 1.8e-15 57.7 0.0 1.5e-10 41.8 0.0 3.5 2 2 1 3 3 3 2 Universal stress protein family HTH_42 PF06224.12 gi|282165647|ref|YP_003358032.1| - 2.9e-50 171.7 4.7 3.7e-50 171.3 4.7 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Flavoprotein PF02441.19 gi|282165648|ref|YP_003358033.1| - 2.9e-20 72.6 0.0 8e-19 67.9 0.0 2.0 1 1 0 1 1 1 1 Flavoprotein FMN_red PF03358.15 gi|282165649|ref|YP_003358034.1| - 2.4e-29 102.1 0.0 3.2e-29 101.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|282165649|ref|YP_003358034.1| - 0.011 15.4 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin-like fold Acetyltransf_7 PF13508.7 gi|282165651|ref|YP_003358036.1| - 3.5e-10 40.2 0.1 4.7e-10 39.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|282165651|ref|YP_003358036.1| - 1e-09 38.4 0.0 1.4e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|282165651|ref|YP_003358036.1| - 4.2e-09 36.6 0.0 5.1e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|282165651|ref|YP_003358036.1| - 0.0008 19.5 0.0 0.0069 16.5 0.0 2.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|282165651|ref|YP_003358036.1| - 0.0049 16.8 0.1 0.012 15.5 0.1 1.6 1 1 0 1 1 1 1 FR47-like protein PanZ PF12568.8 gi|282165651|ref|YP_003358036.1| - 0.04 13.6 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Rad51 PF08423.11 gi|282165652|ref|YP_003358037.1| - 5.2e-86 288.1 0.0 6.3e-86 287.8 0.0 1.0 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|282165652|ref|YP_003358037.1| - 1.3e-12 47.7 0.2 3.7e-11 43.0 0.1 2.1 1 1 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.6 gi|282165652|ref|YP_003358037.1| - 2.6e-12 47.2 0.8 6.6e-12 45.9 0.8 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.6 gi|282165652|ref|YP_003358037.1| - 4.4e-08 32.9 0.0 7.3e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|282165652|ref|YP_003358037.1| - 2.8e-07 30.1 0.0 3.7e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH PF00633.23 gi|282165652|ref|YP_003358037.1| - 6e-07 29.0 2.2 0.014 15.2 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|282165652|ref|YP_003358037.1| - 1.4e-06 28.2 0.1 3.7e-06 26.9 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|282165652|ref|YP_003358037.1| - 0.00017 21.7 0.0 0.00034 20.8 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|282165652|ref|YP_003358037.1| - 0.0011 18.8 0.1 0.0077 16.0 0.0 2.4 2 1 1 3 3 3 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.8 gi|282165652|ref|YP_003358037.1| - 0.0018 18.5 0.0 0.0087 16.3 0.0 2.2 2 0 0 2 2 2 1 IMS family HHH motif AAA_24 PF13479.6 gi|282165652|ref|YP_003358037.1| - 0.0034 17.1 0.0 0.008 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain CobU PF02283.16 gi|282165652|ref|YP_003358037.1| - 0.0036 16.9 0.0 0.042 13.4 0.0 2.1 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA PF00004.29 gi|282165652|ref|YP_003358037.1| - 0.0067 16.8 0.1 0.024 15.0 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|282165652|ref|YP_003358037.1| - 0.019 15.3 0.0 0.035 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|282165652|ref|YP_003358037.1| - 0.035 14.7 0.0 0.12 12.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|282165652|ref|YP_003358037.1| - 0.08 12.2 0.1 13 5.0 0.0 2.5 3 0 0 3 3 3 0 Zeta toxin HHH_8 PF14716.6 gi|282165652|ref|YP_003358037.1| - 0.096 13.1 0.2 1.5 9.3 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain RNA_pol_RpbG PF16992.5 gi|282165652|ref|YP_003358037.1| - 0.11 12.5 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase, subunit G HHH_3 PF12836.7 gi|282165652|ref|YP_003358037.1| - 0.16 12.3 0.1 6.4 7.1 0.1 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif MacB_PCD PF12704.7 gi|282165653|ref|YP_003358038.1| - 2.5e-27 96.5 6.7 2.5e-27 96.5 6.7 2.2 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|282165653|ref|YP_003358038.1| - 1.9e-11 44.3 2.8 1.9e-11 44.3 2.8 2.9 3 0 0 3 3 3 1 FtsX-like permease family Picorna_P3A PF06363.11 gi|282165653|ref|YP_003358038.1| - 0.31 10.9 2.4 0.38 10.6 0.1 2.1 2 0 0 2 2 2 0 Picornaviridae P3A protein DUF4225 PF13988.6 gi|282165653|ref|YP_003358038.1| - 0.45 10.0 4.1 0.18 11.3 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4225) MacB_PCD PF12704.7 gi|282165654|ref|YP_003358039.1| - 2.2e-28 100.0 3.7 2.2e-28 100.0 3.7 2.0 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|282165654|ref|YP_003358039.1| - 1e-11 45.1 1.5 1e-11 45.1 1.5 3.1 3 0 0 3 3 3 1 FtsX-like permease family HRG PF16954.5 gi|282165654|ref|YP_003358039.1| - 0.12 12.8 1.8 1.6 9.2 0.1 2.8 2 0 0 2 2 2 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene NPCBM_assoc PF10633.9 gi|282165655|ref|YP_003358040.1| - 5.2e-06 26.6 5.6 0.0086 16.3 0.1 3.7 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase Uroplakin_II PF07353.12 gi|282165655|ref|YP_003358040.1| - 0.00045 19.8 0.1 0.0012 18.4 0.1 1.8 1 0 0 1 1 1 1 Uroplakin II DUF11 PF01345.18 gi|282165655|ref|YP_003358040.1| - 0.0036 17.6 8.7 0.76 10.1 5.2 3.3 2 1 0 2 2 2 2 Domain of unknown function DUF11 DUF3324 PF11797.8 gi|282165655|ref|YP_003358040.1| - 0.084 12.8 0.1 2.5 8.1 0.0 2.9 3 1 0 3 3 3 0 Protein of unknown function C-terminal (DUF3324) CRF-BP PF05428.11 gi|282165655|ref|YP_003358040.1| - 0.12 11.1 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 Corticotropin-releasing factor binding protein (CRF-BP) ABC_tran PF00005.27 gi|282165656|ref|YP_003358041.1| - 1.7e-32 112.8 0.0 2.2e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|282165656|ref|YP_003358041.1| - 7.4e-10 39.1 0.0 0.00014 21.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|282165656|ref|YP_003358041.1| - 3e-06 26.8 0.3 0.00012 21.6 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|282165656|ref|YP_003358041.1| - 0.00015 21.5 0.1 0.00029 20.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|282165656|ref|YP_003358041.1| - 0.0023 17.7 0.0 0.81 9.3 0.1 2.1 1 1 0 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|282165656|ref|YP_003358041.1| - 0.0034 17.3 0.0 0.0061 16.5 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|282165656|ref|YP_003358041.1| - 0.0034 17.6 0.0 0.0051 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|282165656|ref|YP_003358041.1| - 0.0078 16.6 0.0 0.01 16.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|282165656|ref|YP_003358041.1| - 0.011 16.3 0.0 0.019 15.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.9 gi|282165656|ref|YP_003358041.1| - 0.031 13.0 0.0 0.042 12.6 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein dNK PF01712.19 gi|282165656|ref|YP_003358041.1| - 0.034 14.0 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase MMR_HSR1 PF01926.23 gi|282165656|ref|YP_003358041.1| - 0.058 13.5 0.0 0.13 12.3 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|282165656|ref|YP_003358041.1| - 0.068 12.9 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ATPase PF06745.13 gi|282165656|ref|YP_003358041.1| - 0.072 12.4 0.1 6.6 6.0 0.1 2.1 2 0 0 2 2 2 0 KaiC AAA_18 PF13238.6 gi|282165656|ref|YP_003358041.1| - 0.098 13.2 0.0 0.26 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|282165656|ref|YP_003358041.1| - 0.13 12.5 0.1 0.39 10.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|282165656|ref|YP_003358041.1| - 0.16 11.7 0.0 0.42 10.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|282165656|ref|YP_003358041.1| - 0.16 11.5 0.0 0.33 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|282165656|ref|YP_003358041.1| - 0.17 11.1 0.3 0.31 10.2 0.1 1.4 2 0 0 2 2 2 0 NB-ARC domain IMPDH PF00478.25 gi|282165657|ref|YP_003358042.1| - 1.4e-145 484.6 11.5 1.6e-145 484.4 11.5 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|282165657|ref|YP_003358042.1| - 6.6e-25 87.3 4.1 4.6e-12 46.2 0.9 3.0 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 gi|282165657|ref|YP_003358042.1| - 2.5e-10 40.3 7.0 6.3e-05 22.5 5.0 2.5 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|282165657|ref|YP_003358042.1| - 5.5e-06 25.6 13.6 1.2e-05 24.5 12.3 2.1 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|282165657|ref|YP_003358042.1| - 0.00067 18.9 6.0 0.0013 17.9 6.0 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|282165657|ref|YP_003358042.1| - 0.0023 17.4 3.6 0.0023 17.4 3.6 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|282165657|ref|YP_003358042.1| - 0.0093 15.3 1.7 0.0093 15.3 1.7 2.5 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG GAF PF01590.26 gi|282165657|ref|YP_003358042.1| - 0.14 12.7 0.0 1.7 9.3 0.0 2.4 2 0 0 2 2 2 0 GAF domain BtpA PF03437.15 gi|282165657|ref|YP_003358042.1| - 4 6.8 11.5 0.89 8.9 1.2 3.4 2 1 1 3 3 3 0 BtpA family 4HFCP_synth PF04476.13 gi|282165658|ref|YP_003358043.1| - 2.5e-88 295.6 0.0 2.8e-88 295.5 0.0 1.0 1 0 0 1 1 1 1 4-HFC-P synthase QRPTase_C PF01729.19 gi|282165658|ref|YP_003358043.1| - 4e-06 26.7 0.0 2.3e-05 24.2 0.0 2.0 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Tmemb_cc2 PF10267.9 gi|282165659|ref|YP_003358044.1| - 0.053 12.7 1.6 0.063 12.4 1.6 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein tRNA_anti-codon PF01336.25 gi|282165660|ref|YP_003358045.1| - 3.6e-33 113.4 8.2 3.9e-12 46.0 0.5 3.3 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|282165660|ref|YP_003358045.1| - 1.1e-10 41.6 0.3 0.035 13.8 0.1 3.2 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|282165660|ref|YP_003358045.1| - 2.9e-10 39.9 7.3 0.00017 21.5 0.0 3.8 4 1 0 4 4 4 3 Replication protein A OB domain DUF5088 PF17008.5 gi|282165660|ref|YP_003358045.1| - 0.0021 17.8 0.0 0.41 10.4 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF5088) POT1PC PF16686.5 gi|282165660|ref|YP_003358045.1| - 0.0021 17.9 0.0 1.7 8.5 0.0 3.1 3 0 0 3 3 3 2 ssDNA-binding domain of telomere protection protein Aconitase PF00330.20 gi|282165661|ref|YP_003358046.1| - 2.4e-100 336.7 0.3 2.3e-98 330.2 0.3 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|282165662|ref|YP_003358047.1| - 1.2e-21 77.4 0.0 3.6e-20 72.6 0.0 2.0 1 1 1 2 2 2 2 Aconitase C-terminal domain Iso_dh PF00180.20 gi|282165663|ref|YP_003358048.1| - 4.8e-92 308.8 0.0 5.6e-92 308.5 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase HTH_5 PF01022.20 gi|282165664|ref|YP_003358049.1| - 0.00015 21.6 0.0 0.00067 19.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|282165664|ref|YP_003358049.1| - 0.00015 22.2 0.0 0.00033 21.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|282165664|ref|YP_003358049.1| - 0.00045 20.2 0.0 0.0012 18.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|282165664|ref|YP_003358049.1| - 0.001 19.0 0.0 0.002 18.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.6 gi|282165664|ref|YP_003358049.1| - 0.0021 18.2 0.1 0.023 14.8 0.0 2.3 2 0 0 2 2 2 1 Mrr N-terminal domain DUF3287 PF11690.8 gi|282165664|ref|YP_003358049.1| - 0.02 14.6 0.9 0.038 13.7 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3287) DUF1495 PF07381.11 gi|282165664|ref|YP_003358049.1| - 0.11 12.3 0.8 0.49 10.3 0.1 2.3 2 1 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.7 gi|282165664|ref|YP_003358049.1| - 0.14 12.1 0.0 0.66 9.9 0.0 2.0 1 1 1 2 2 2 0 MarR family Tnp_22_trimer PF17489.2 gi|282165664|ref|YP_003358049.1| - 0.25 11.3 3.8 0.96 9.5 3.8 2.1 1 0 0 1 1 1 0 L1 transposable element trimerization domain DUF2225 PF09986.9 gi|282165665|ref|YP_003358050.1| - 1.3e-25 90.4 0.0 1.9e-25 89.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_12 PF13424.6 gi|282165665|ref|YP_003358050.1| - 6.3e-06 26.4 0.3 0.0018 18.5 0.2 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|282165665|ref|YP_003358050.1| - 6.7e-06 25.8 2.6 0.0071 16.4 0.3 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|282165665|ref|YP_003358050.1| - 2.9e-05 23.7 0.0 0.075 12.9 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|282165665|ref|YP_003358050.1| - 9.3e-05 22.8 0.2 0.55 11.0 0.0 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|282165665|ref|YP_003358050.1| - 0.0017 19.0 0.8 1.1 10.3 0.0 2.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|282165665|ref|YP_003358050.1| - 0.0023 18.0 0.2 0.0068 16.5 0.0 1.9 2 0 0 2 2 1 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|282165665|ref|YP_003358050.1| - 0.012 15.6 3.8 0.66 10.1 0.2 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat zf-H2C2_2 PF13465.6 gi|282165665|ref|YP_003358050.1| - 0.013 15.9 4.8 3 8.4 1.4 2.7 2 0 0 2 2 2 0 Zinc-finger double domain Zn-C2H2_12 PF18112.1 gi|282165665|ref|YP_003358050.1| - 0.035 14.6 0.5 0.33 11.4 0.0 2.6 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain DUF1330 PF07045.11 gi|282165665|ref|YP_003358050.1| - 0.058 13.7 0.1 0.095 13.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1330) CpXC PF14353.6 gi|282165665|ref|YP_003358050.1| - 0.061 13.4 3.3 0.1 12.6 1.4 2.2 2 1 0 2 2 2 0 CpXC protein TPR_16 PF13432.6 gi|282165665|ref|YP_003358050.1| - 0.086 13.5 0.4 28 5.5 0.0 2.7 1 1 0 2 2 2 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|282165665|ref|YP_003358050.1| - 0.1 12.9 0.6 0.65 10.3 0.2 2.4 2 1 1 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 Zn_Tnp_IS1595 PF12760.7 gi|282165665|ref|YP_003358050.1| - 0.11 12.5 2.1 13 5.9 0.0 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Sel1 PF08238.12 gi|282165665|ref|YP_003358050.1| - 0.69 10.7 2.8 4.7 8.0 0.2 2.4 2 0 0 2 2 2 0 Sel1 repeat Rad50_zn_hook PF04423.14 gi|282165665|ref|YP_003358050.1| - 0.8 9.6 0.0 0.8 9.6 0.0 2.5 3 0 0 3 3 3 0 Rad50 zinc hook motif zf-ribbon_3 PF13248.6 gi|282165665|ref|YP_003358050.1| - 0.85 9.1 3.8 8.4 6.0 0.7 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|282165665|ref|YP_003358050.1| - 1.9 8.1 6.6 0.36 10.4 0.4 2.4 2 1 1 3 3 3 0 C2H2 type zinc-finger zinc_ribbon_9 PF14369.6 gi|282165665|ref|YP_003358050.1| - 6.9 7.0 8.3 8.4 6.8 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon Rubrerythrin PF02915.17 gi|282165666|ref|YP_003358051.1| - 1.9e-18 67.2 6.5 7.5e-18 65.2 6.6 1.7 1 1 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|282165666|ref|YP_003358051.1| - 1e-07 32.3 3.4 5.8e-06 26.6 0.4 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) Ferritin_2 PF13668.6 gi|282165666|ref|YP_003358051.1| - 4.1e-07 30.3 3.0 1.7e-06 28.3 2.9 1.8 1 1 0 1 1 1 1 Ferritin-like domain Ald_deCOase PF11266.8 gi|282165666|ref|YP_003358051.1| - 0.00025 20.8 0.8 0.25 11.0 0.1 2.1 2 0 0 2 2 2 2 Long-chain fatty aldehyde decarbonylase Ferritin PF00210.24 gi|282165666|ref|YP_003358051.1| - 0.00047 20.1 3.4 0.0059 16.6 0.6 2.1 2 0 0 2 2 2 1 Ferritin-like domain BPL_N PF09825.9 gi|282165666|ref|YP_003358051.1| - 0.014 14.5 0.3 0.016 14.3 0.3 1.0 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal Ribosomal_L18A PF01775.17 gi|282165666|ref|YP_003358051.1| - 0.015 15.4 0.1 2.1 8.4 0.1 2.1 2 0 0 2 2 2 0 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A COQ7 PF03232.13 gi|282165666|ref|YP_003358051.1| - 0.019 14.8 1.3 1.3 8.7 0.1 2.1 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 DUF892 PF05974.12 gi|282165666|ref|YP_003358051.1| - 0.03 14.3 3.9 1 9.4 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF892) Myc_N PF01056.18 gi|282165666|ref|YP_003358051.1| - 0.073 13.0 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Myc amino-terminal region DUF3231 PF11553.8 gi|282165666|ref|YP_003358051.1| - 0.078 12.6 2.7 2.9 7.5 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3231) RICTOR_M PF14666.6 gi|282165666|ref|YP_003358051.1| - 0.12 12.2 0.1 5.4 6.8 0.0 2.1 2 0 0 2 2 2 0 Rapamycin-insensitive companion of mTOR, middle domain DDE_Tnp_1 PF01609.21 gi|282165667|ref|YP_003358052.1| - 1.8e-09 37.6 2.6 3.7e-09 36.5 2.6 1.5 1 1 0 1 1 1 1 Transposase DDE domain Vfa1 PF08432.10 gi|282165667|ref|YP_003358052.1| - 0.14 12.4 5.9 2.9 8.2 2.7 2.2 2 0 0 2 2 2 0 AAA-ATPase Vps4-associated protein 1 DNA_pol_E_B PF04042.16 gi|282165668|ref|YP_003358053.1| - 1.1e-15 57.5 0.0 1.9e-15 56.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|282165668|ref|YP_003358053.1| - 1.2e-11 45.5 0.3 1.8e-11 45.0 0.3 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|282165668|ref|YP_003358053.1| - 1.5e-09 38.2 0.5 8.3e-09 35.8 0.3 2.2 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|282165668|ref|YP_003358053.1| - 2.8e-05 24.0 0.2 6.9e-05 22.8 0.1 1.7 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Peptidase_S24 PF00717.23 gi|282165669|ref|YP_003358054.1| - 0.00055 19.8 0.1 0.001 19.0 0.1 1.5 1 0 0 1 1 1 1 Peptidase S24-like OTCace_N PF02729.21 gi|282165670|ref|YP_003358055.1| - 1.8e-48 164.3 0.0 3.3e-48 163.5 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|282165670|ref|YP_003358055.1| - 1.6e-28 99.8 0.0 2.1e-28 99.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|282165671|ref|YP_003358056.1| - 6.7e-34 116.0 0.2 9.2e-34 115.6 0.2 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|282165671|ref|YP_003358056.1| - 1.2e-17 63.6 1.3 2.3e-17 62.6 1.3 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain HMG-CoA_red PF00368.18 gi|282165672|ref|YP_003358057.1| - 1e-127 426.2 1.8 1.2e-127 426.0 1.8 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase GCD14 PF08704.10 gi|282165673|ref|YP_003358058.1| - 3e-15 56.6 0.0 3.7e-14 53.0 0.0 1.9 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_25 PF13649.6 gi|282165673|ref|YP_003358058.1| - 1.1e-09 38.8 0.1 1.9e-09 38.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|282165673|ref|YP_003358058.1| - 1.7e-09 37.1 0.0 2.5e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|282165673|ref|YP_003358058.1| - 2.4e-08 34.5 0.0 4.1e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|282165673|ref|YP_003358058.1| - 3e-08 33.6 0.0 4.2e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|282165673|ref|YP_003358058.1| - 3.2e-07 30.3 0.0 4.5e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|282165673|ref|YP_003358058.1| - 2e-05 24.6 0.0 3.3e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|282165673|ref|YP_003358058.1| - 2.5e-05 23.8 0.1 3e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|282165673|ref|YP_003358058.1| - 5.3e-05 22.8 0.1 8.3e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|282165673|ref|YP_003358058.1| - 6.6e-05 23.9 0.1 0.00024 22.1 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|282165673|ref|YP_003358058.1| - 0.00083 18.7 0.0 0.0018 17.7 0.0 1.5 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|282165673|ref|YP_003358058.1| - 0.018 14.9 0.0 0.042 13.7 0.0 1.6 1 1 1 2 2 2 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|282165673|ref|YP_003358058.1| - 0.019 15.7 0.1 0.052 14.3 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|282165673|ref|YP_003358058.1| - 0.035 13.7 0.0 0.081 12.6 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical protein 95 PNP_UDP_1 PF01048.20 gi|282165673|ref|YP_003358058.1| - 0.04 13.2 0.1 0.074 12.3 0.1 1.4 1 1 0 1 1 1 0 Phosphorylase superfamily TehB PF03848.14 gi|282165673|ref|YP_003358058.1| - 0.075 12.4 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|282165673|ref|YP_003358058.1| - 0.16 11.9 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|282165673|ref|YP_003358058.1| - 0.17 11.6 0.0 0.4 10.3 0.0 1.5 2 0 0 2 2 2 0 DNA methylase Methyltr_RsmB-F PF01189.17 gi|282165673|ref|YP_003358058.1| - 0.22 11.1 0.0 0.34 10.5 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F NAC PF01849.18 gi|282165674|ref|YP_003358059.1| - 1.8e-15 56.7 0.6 3.1e-15 55.9 0.6 1.4 1 0 0 1 1 1 1 NAC domain DUF4158 PF13700.6 gi|282165674|ref|YP_003358059.1| - 0.097 12.5 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4158) CUE PF02845.16 gi|282165674|ref|YP_003358059.1| - 0.13 12.0 0.0 0.36 10.6 0.0 1.7 2 0 0 2 2 2 0 CUE domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanocella_paludicola_SANAE_uid42887/NC_013665.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanocella_paludicola_SANAE_uid42887/NC_013665.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanocella_paludicola_SANAE_uid42887/NC_013665.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanocella_paludicola_SANAE_uid42887/NC_013665.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:02:02 2019 # [ok]