# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Glycos_transf_2 PF00535.26 gi|383318454|ref|YP_005379295.1| - 7.7e-28 97.4 0.7 4.4e-27 95.0 0.7 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|383318454|ref|YP_005379295.1| - 1.7e-21 77.2 0.1 2.3e-21 76.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|383318454|ref|YP_005379295.1| - 1.2e-11 44.4 0.0 3.9e-11 42.7 0.0 1.7 1 1 1 2 2 2 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|383318454|ref|YP_005379295.1| - 5.8e-11 42.7 0.0 9.5e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|383318454|ref|YP_005379295.1| - 2.4e-09 37.1 0.1 4.3e-09 36.2 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|383318454|ref|YP_005379295.1| - 0.018 15.6 0.1 0.038 14.5 0.1 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Fe_dep_repr_C PF02742.15 gi|383318455|ref|YP_005379296.1| - 4.6e-26 90.7 1.1 7.2e-26 90.1 0.3 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|383318455|ref|YP_005379296.1| - 4.8e-22 77.9 1.0 1e-20 73.7 0.2 2.7 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|383318455|ref|YP_005379296.1| - 1.3e-14 54.2 0.0 3.4e-14 52.9 0.0 1.7 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.7 gi|383318455|ref|YP_005379296.1| - 5.6e-07 29.3 0.0 2.1e-06 27.5 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|383318455|ref|YP_005379296.1| - 1.6e-06 27.8 0.0 4.5e-06 26.4 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|383318455|ref|YP_005379296.1| - 4.5e-06 26.4 0.0 1e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|383318455|ref|YP_005379296.1| - 5.5e-06 26.2 0.0 3.5e-05 23.6 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|383318455|ref|YP_005379296.1| - 1.2e-05 25.2 0.0 2.4e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|383318455|ref|YP_005379296.1| - 3.7e-05 23.2 0.0 7.5e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|383318455|ref|YP_005379296.1| - 5.9e-05 23.3 0.0 0.00014 22.1 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|383318455|ref|YP_005379296.1| - 0.0005 19.9 0.0 0.0011 18.9 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|383318455|ref|YP_005379296.1| - 0.00064 19.4 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_27 PF13463.6 gi|383318455|ref|YP_005379296.1| - 0.00065 20.2 0.0 0.0012 19.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain FaeA PF04703.12 gi|383318455|ref|YP_005379296.1| - 0.00087 19.6 0.0 0.0019 18.5 0.0 1.6 1 0 0 1 1 1 1 FaeA-like protein HTH_10 PF04967.12 gi|383318455|ref|YP_005379296.1| - 0.0078 16.0 0.0 0.022 14.5 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r3 PF04539.16 gi|383318455|ref|YP_005379296.1| - 0.008 16.3 0.0 0.019 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70 region 3 GntR PF00392.21 gi|383318455|ref|YP_005379296.1| - 0.0083 15.7 0.0 0.033 13.8 0.0 2.0 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HrcA_DNA-bdg PF03444.15 gi|383318455|ref|YP_005379296.1| - 0.025 14.2 0.1 0.059 13.0 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Crp PF00325.20 gi|383318455|ref|YP_005379296.1| - 0.057 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_20 PF12840.7 gi|383318455|ref|YP_005379296.1| - 0.1 12.7 0.0 0.32 11.1 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|383318455|ref|YP_005379296.1| - 0.18 11.8 0.0 0.34 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FeoB_N PF02421.18 gi|383318456|ref|YP_005379297.1| - 4e-54 182.4 0.0 6.1e-54 181.8 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|383318456|ref|YP_005379297.1| - 6e-26 90.9 25.4 1.3e-13 51.2 8.7 3.5 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|383318456|ref|YP_005379297.1| - 5.1e-18 65.2 0.0 8.7e-18 64.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|383318456|ref|YP_005379297.1| - 7.6e-14 51.1 1.0 7.6e-14 51.1 1.0 4.0 4 1 1 5 5 5 1 Ferrous iron transport protein B C terminus ATP_bind_1 PF03029.17 gi|383318456|ref|YP_005379297.1| - 0.00071 19.4 0.7 0.0097 15.7 0.0 2.2 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein SRPRB PF09439.10 gi|383318456|ref|YP_005379297.1| - 0.0017 17.8 0.0 0.0028 17.1 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit FeoB_Cyto PF17910.1 gi|383318456|ref|YP_005379297.1| - 0.0052 17.3 0.0 0.0087 16.6 0.0 1.4 1 0 0 1 1 1 1 FeoB cytosolic helical domain AIG1 PF04548.16 gi|383318456|ref|YP_005379297.1| - 0.0075 15.6 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 gi|383318456|ref|YP_005379297.1| - 0.035 14.2 0.6 8.3 6.4 0.0 2.3 1 1 0 2 2 2 0 Dynamin family Herpes_UL73 PF03554.13 gi|383318456|ref|YP_005379297.1| - 0.26 11.3 2.0 0.76 9.8 2.0 1.8 1 0 0 1 1 1 0 UL73 viral envelope glycoprotein ABC_tran PF00005.27 gi|383318457|ref|YP_005379298.1| - 1.7e-37 129.0 0.0 1.2e-18 68.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter RLI PF04068.15 gi|383318457|ref|YP_005379298.1| - 4.1e-14 52.1 4.6 1e-13 50.9 4.6 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.19 gi|383318457|ref|YP_005379298.1| - 5.7e-12 45.5 7.4 4.6e-05 23.0 1.8 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.27 gi|383318457|ref|YP_005379298.1| - 3.8e-08 32.8 3.8 3.8e-08 32.8 3.8 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383318457|ref|YP_005379298.1| - 1.6e-07 31.1 12.4 1.6e-06 27.9 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_21 PF13304.6 gi|383318457|ref|YP_005379298.1| - 2.6e-07 30.7 3.1 0.39 10.5 0.0 4.2 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|383318457|ref|YP_005379298.1| - 2.9e-05 24.5 0.1 0.025 15.0 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Fer4_21 PF14697.6 gi|383318457|ref|YP_005379298.1| - 6.7e-05 22.9 9.9 0.00011 22.2 9.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|383318457|ref|YP_005379298.1| - 0.0001 22.1 0.1 0.086 12.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain Fer4_10 PF13237.6 gi|383318457|ref|YP_005379298.1| - 0.00013 22.0 11.3 0.0009 19.3 1.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_33 PF13671.6 gi|383318457|ref|YP_005379298.1| - 0.00018 21.7 0.1 0.14 12.3 0.1 3.0 3 0 0 3 3 2 1 AAA domain SRP54 PF00448.22 gi|383318457|ref|YP_005379298.1| - 0.00026 20.7 0.4 0.39 10.3 0.0 2.7 3 0 0 3 3 3 2 SRP54-type protein, GTPase domain Fer4_9 PF13187.6 gi|383318457|ref|YP_005379298.1| - 0.00031 20.8 9.3 0.00057 20.0 9.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain NACHT PF05729.12 gi|383318457|ref|YP_005379298.1| - 0.00033 20.6 0.1 0.15 12.0 0.0 2.5 2 0 0 2 2 2 1 NACHT domain Fer4_2 PF12797.7 gi|383318457|ref|YP_005379298.1| - 0.00036 20.5 1.6 0.00036 20.5 1.6 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383318457|ref|YP_005379298.1| - 0.00045 20.8 8.2 0.0012 19.4 8.3 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|383318457|ref|YP_005379298.1| - 0.00048 20.6 0.1 0.14 12.5 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.22 gi|383318457|ref|YP_005379298.1| - 0.0013 19.1 0.1 1.3 9.5 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_22 PF13401.6 gi|383318457|ref|YP_005379298.1| - 0.0016 18.8 0.0 0.08 13.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|383318457|ref|YP_005379298.1| - 0.0022 17.5 0.2 0.029 13.8 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein Fer4_16 PF13484.6 gi|383318457|ref|YP_005379298.1| - 0.0049 17.8 1.0 0.0049 17.8 1.0 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain NB-ARC PF00931.22 gi|383318457|ref|YP_005379298.1| - 0.0056 15.9 0.0 0.19 10.9 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain RuvB_N PF05496.12 gi|383318457|ref|YP_005379298.1| - 0.0066 16.2 0.3 0.18 11.6 0.0 2.7 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_23 PF13476.6 gi|383318457|ref|YP_005379298.1| - 0.0078 16.7 0.0 1.8 9.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|383318457|ref|YP_005379298.1| - 0.0093 16.0 2.4 2.1 8.4 0.0 3.5 3 1 0 4 4 3 1 AAA domain AAA_5 PF07728.14 gi|383318457|ref|YP_005379298.1| - 0.01 15.8 0.0 1.1 9.2 0.0 3.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|383318457|ref|YP_005379298.1| - 0.013 15.4 0.1 5.1 7.0 0.1 2.5 2 1 0 2 2 2 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|383318457|ref|YP_005379298.1| - 0.015 15.9 0.5 13 6.3 0.0 3.3 3 0 0 3 3 3 0 AAA domain AAA_15 PF13175.6 gi|383318457|ref|YP_005379298.1| - 0.029 14.1 0.1 4.2 7.0 0.0 2.9 3 0 0 3 3 3 0 AAA ATPase domain SbcCD_C PF13558.6 gi|383318457|ref|YP_005379298.1| - 0.03 14.5 0.0 26 5.1 0.1 3.1 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|383318457|ref|YP_005379298.1| - 0.045 13.6 0.1 5.2 6.9 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase Lactococcin PF04369.13 gi|383318457|ref|YP_005379298.1| - 0.18 12.0 0.0 24 5.1 0.0 2.4 2 0 0 2 2 2 0 Lactococcin-like family NTPase_1 PF03266.15 gi|383318457|ref|YP_005379298.1| - 0.2 11.5 1.9 5.1 7.0 0.0 3.0 3 0 0 3 3 2 0 NTPase Thymidylate_kin PF02223.17 gi|383318457|ref|YP_005379298.1| - 0.24 11.1 1.0 18 4.9 0.1 2.7 3 0 0 3 3 2 0 Thymidylate kinase TsaE PF02367.17 gi|383318457|ref|YP_005379298.1| - 0.26 11.3 0.4 2.5 8.1 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Fer4_22 PF17179.4 gi|383318457|ref|YP_005379298.1| - 0.37 11.7 4.2 0.84 10.5 4.2 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|383318457|ref|YP_005379298.1| - 0.39 10.3 2.5 3.7 7.1 0.0 2.8 3 0 0 3 3 2 0 AAA domain DUF87 PF01935.17 gi|383318457|ref|YP_005379298.1| - 0.39 10.8 2.6 10 6.2 0.4 2.7 3 0 0 3 3 2 0 Helicase HerA, central domain AAA_30 PF13604.6 gi|383318457|ref|YP_005379298.1| - 0.8 9.4 3.0 20 4.9 0.2 2.7 2 1 0 2 2 2 0 AAA domain Fer4_4 PF12800.7 gi|383318457|ref|YP_005379298.1| - 2.6 8.8 13.8 0.25 11.9 3.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|383318457|ref|YP_005379298.1| - 6.3 7.3 8.0 2.1 8.8 2.8 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383318457|ref|YP_005379298.1| - 8.3 7.0 10.7 58 4.3 10.7 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain F420_oxidored PF03807.17 gi|383318459|ref|YP_005379300.1| - 4.6e-21 75.2 0.3 8.3e-21 74.4 0.3 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|383318459|ref|YP_005379300.1| - 0.0003 21.1 0.1 0.00057 20.1 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|383318459|ref|YP_005379300.1| - 0.001 19.5 0.1 0.0016 18.9 0.1 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ApbA PF02558.16 gi|383318459|ref|YP_005379300.1| - 0.0012 18.5 0.1 0.0017 18.0 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|383318459|ref|YP_005379300.1| - 0.0014 18.6 0.0 0.0017 18.3 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Ldh_1_N PF00056.23 gi|383318459|ref|YP_005379300.1| - 0.0088 16.1 0.2 0.014 15.5 0.2 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|383318459|ref|YP_005379300.1| - 0.034 14.3 0.1 0.061 13.5 0.0 1.4 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|383318459|ref|YP_005379300.1| - 0.049 13.5 0.2 0.067 13.1 0.2 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|383318459|ref|YP_005379300.1| - 0.059 13.6 0.2 0.13 12.5 0.1 1.6 2 0 0 2 2 2 0 TrkA-N domain KR PF08659.10 gi|383318459|ref|YP_005379300.1| - 0.11 12.4 0.1 0.14 12.1 0.1 1.2 1 0 0 1 1 1 0 KR domain PDH PF02153.17 gi|383318459|ref|YP_005379300.1| - 0.11 11.5 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase NAD_binding_10 PF13460.6 gi|383318459|ref|YP_005379300.1| - 0.13 12.1 0.3 0.19 11.6 0.3 1.3 1 0 0 1 1 1 0 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|383318459|ref|YP_005379300.1| - 0.14 11.3 0.1 0.19 10.8 0.1 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein ParA PF10609.9 gi|383318460|ref|YP_005379301.1| - 9e-86 287.3 1.5 1.1e-85 287.0 1.5 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|383318460|ref|YP_005379301.1| - 1.5e-16 60.6 0.0 5.8e-16 58.7 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|383318460|ref|YP_005379301.1| - 4.8e-10 39.6 0.4 3e-09 37.1 0.4 1.9 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|383318460|ref|YP_005379301.1| - 2.7e-06 26.8 0.4 4.8e-06 26.0 0.4 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|383318460|ref|YP_005379301.1| - 5.5e-06 26.3 0.5 0.019 14.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|383318460|ref|YP_005379301.1| - 2.1e-05 24.0 0.0 3.3e-05 23.3 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ MeaB PF03308.16 gi|383318460|ref|YP_005379301.1| - 0.0007 18.7 0.2 0.0014 17.7 0.2 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CBP_BcsQ PF06564.12 gi|383318460|ref|YP_005379301.1| - 0.0084 15.6 0.3 0.021 14.3 0.2 1.6 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|383318460|ref|YP_005379301.1| - 0.014 14.8 0.4 0.043 13.3 0.2 1.9 2 1 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family RsgA_GTPase PF03193.16 gi|383318460|ref|YP_005379301.1| - 0.015 15.2 0.0 0.068 13.1 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase NB-ARC PF00931.22 gi|383318460|ref|YP_005379301.1| - 0.036 13.2 0.1 0.056 12.6 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|383318460|ref|YP_005379301.1| - 0.037 13.6 0.0 0.068 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|383318460|ref|YP_005379301.1| - 0.085 12.6 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|383318460|ref|YP_005379301.1| - 0.098 13.0 0.1 0.45 10.9 0.1 1.9 2 0 0 2 2 2 0 AAA ATPase domain CLP1_P PF16575.5 gi|383318460|ref|YP_005379301.1| - 0.15 11.8 0.0 0.26 11.1 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop HypD PF01924.16 gi|383318462|ref|YP_005379303.1| - 1.7e-137 458.3 0.2 2e-137 458.0 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family NadA PF02445.16 gi|383318463|ref|YP_005379304.1| - 4.6e-115 383.9 0.3 5.2e-115 383.7 0.3 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein SpoIIM PF01944.17 gi|383318464|ref|YP_005379305.1| - 2.8e-33 115.2 20.3 3.6e-33 114.8 20.3 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M DUF63 PF01889.17 gi|383318465|ref|YP_005379306.1| - 1.4e-92 310.8 23.5 1.6e-92 310.6 23.5 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF4381 PF14316.6 gi|383318465|ref|YP_005379306.1| - 0.054 13.7 0.1 0.054 13.7 0.1 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4381) Fe-ADH_2 PF13685.6 gi|383318466|ref|YP_005379307.1| - 7.5e-77 258.4 3.2 9.3e-77 258.1 3.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|383318466|ref|YP_005379307.1| - 8.3e-30 103.8 3.2 1.4e-27 96.5 2.9 2.0 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|383318466|ref|YP_005379307.1| - 3.8e-05 23.0 0.4 0.00029 20.1 0.4 2.4 1 1 0 1 1 1 1 3-dehydroquinate synthase PrsW-protease PF13367.6 gi|383318467|ref|YP_005379308.1| - 7e-39 133.3 15.8 7e-39 133.3 15.8 2.7 3 0 0 3 3 3 2 PrsW family intramembrane metalloprotease MarR PF01047.22 gi|383318468|ref|YP_005379309.1| - 0.07 13.1 0.5 0.085 12.8 0.5 1.1 1 0 0 1 1 1 0 MarR family zf-RING_7 PF02591.15 gi|383318469|ref|YP_005379310.1| - 0.011 15.9 0.1 0.026 14.7 0.1 1.6 1 0 0 1 1 1 0 C4-type zinc ribbon domain POT1 PF02765.17 gi|383318469|ref|YP_005379310.1| - 0.04 13.8 0.0 1.1 9.0 0.0 2.3 1 1 1 2 2 2 0 Telomeric single stranded DNA binding POT1/CDC13 RMI1_C PF16099.5 gi|383318469|ref|YP_005379310.1| - 0.14 12.0 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 Recq-mediated genome instability protein 1, C-terminal OB-fold Spindle_Spc25 PF08234.12 gi|383318469|ref|YP_005379310.1| - 0.21 11.8 0.3 2.4 8.4 0.1 2.4 2 0 0 2 2 2 0 Chromosome segregation protein Spc25 CarboxypepD_reg PF13620.6 gi|383318471|ref|YP_005379312.1| - 5.4e-16 58.6 9.7 6.1e-07 29.6 0.3 3.6 3 0 0 3 3 3 3 Carboxypeptidase regulatory-like domain bMG3 PF11974.8 gi|383318471|ref|YP_005379312.1| - 1.6e-08 34.5 0.1 3e-05 24.0 0.1 2.4 2 0 0 2 2 2 2 Bacterial alpha-2-macroglobulin MG3 domain MG4 PF17789.1 gi|383318471|ref|YP_005379312.1| - 8.1e-06 25.9 0.1 0.0011 19.0 0.0 2.6 2 0 0 2 2 2 1 Macroglobulin domain MG4 DUF1416 PF07210.12 gi|383318471|ref|YP_005379312.1| - 4e-05 23.4 0.2 0.0089 15.9 0.0 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF1416) SdrD_B PF17210.3 gi|383318471|ref|YP_005379312.1| - 0.00016 21.9 2.3 0.082 13.1 0.1 3.5 3 0 0 3 3 3 1 SdrD B-like domain Big_1 PF02369.16 gi|383318471|ref|YP_005379312.1| - 0.0019 18.1 7.7 0.0061 16.5 3.5 2.9 2 1 0 2 2 2 1 Bacterial Ig-like domain (group 1) CarbopepD_reg_2 PF13715.6 gi|383318471|ref|YP_005379312.1| - 0.011 15.7 2.2 2.2 8.3 0.0 3.7 3 1 0 3 3 3 0 CarboxypepD_reg-like domain DUF824 PF05688.11 gi|383318471|ref|YP_005379312.1| - 0.039 13.8 0.6 1.2 9.0 0.1 2.8 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) Big_6 PF17936.1 gi|383318471|ref|YP_005379312.1| - 1.6 9.1 4.4 5.4 7.4 0.9 3.3 3 1 1 4 4 4 0 Bacterial Ig domain PQQ_2 PF13360.6 gi|383318472|ref|YP_005379313.1| - 7.8e-16 58.4 0.0 9.5e-07 28.6 0.0 3.3 2 1 1 3 3 3 3 PQQ-like domain HTH_24 PF13412.6 gi|383318472|ref|YP_005379313.1| - 7.4e-15 54.2 0.4 3.1e-09 36.3 0.2 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding PQQ PF01011.21 gi|383318472|ref|YP_005379313.1| - 8.9e-08 31.7 3.4 0.2 11.6 0.0 6.4 6 0 0 6 6 6 2 PQQ enzyme repeat HTH_5 PF01022.20 gi|383318472|ref|YP_005379313.1| - 4.3e-06 26.5 0.0 0.0026 17.6 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|383318472|ref|YP_005379313.1| - 1.5e-05 24.8 0.0 0.00071 19.4 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|383318472|ref|YP_005379313.1| - 5.5e-05 22.9 0.0 0.42 10.5 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR PF01047.22 gi|383318472|ref|YP_005379313.1| - 0.00019 21.3 0.1 0.011 15.6 0.1 2.4 2 0 0 2 2 2 1 MarR family PQQ_3 PF13570.6 gi|383318472|ref|YP_005379313.1| - 0.00024 21.5 25.1 0.14 12.7 0.0 9.1 8 3 2 10 10 10 2 PQQ-like domain TrmB PF01978.19 gi|383318472|ref|YP_005379313.1| - 0.0012 18.7 0.1 0.0039 17.0 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|383318472|ref|YP_005379313.1| - 0.0034 17.4 0.0 2.5 8.2 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_11 PF08279.12 gi|383318472|ref|YP_005379313.1| - 0.0047 16.8 0.1 0.012 15.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|383318472|ref|YP_005379313.1| - 0.012 15.5 0.1 0.025 14.4 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Mga PF08280.11 gi|383318472|ref|YP_005379313.1| - 0.016 15.2 0.2 0.075 13.1 0.2 1.9 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain Fe_dep_repress PF01325.19 gi|383318472|ref|YP_005379313.1| - 0.043 14.0 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TPPK_C PF12555.8 gi|383318473|ref|YP_005379314.1| - 0.0035 17.3 2.0 0.0035 17.3 2.0 2.1 1 1 1 2 2 2 1 Thiamine pyrophosphokinase C terminal FTR1 PF03239.14 gi|383318473|ref|YP_005379314.1| - 0.25 10.5 6.3 0.28 10.3 6.3 1.1 1 0 0 1 1 1 0 Iron permease FTR1 family DUF3493 PF11998.8 gi|383318473|ref|YP_005379314.1| - 0.45 10.7 3.1 0.56 10.4 3.1 1.2 1 0 0 1 1 1 0 Low psii accumulation1 / Rep27 Response_reg PF00072.24 gi|383318474|ref|YP_005379315.1| - 1e-29 103.0 1.5 1.2e-29 102.8 1.5 1.0 1 0 0 1 1 1 1 Response regulator receiver domain FbpA PF05833.11 gi|383318475|ref|YP_005379316.1| - 4.4e-97 325.7 3.7 5.5e-97 325.4 3.7 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|383318475|ref|YP_005379316.1| - 9.1e-27 93.9 0.0 1.9e-26 92.8 0.0 1.6 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|383318475|ref|YP_005379316.1| - 3e-05 24.2 0.0 8.8e-05 22.7 0.0 1.8 1 0 0 1 1 1 1 NFACT protein RNA binding domain H2TH PF06831.14 gi|383318475|ref|YP_005379316.1| - 0.00038 20.4 0.0 0.00097 19.1 0.0 1.6 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain NFACT-C PF11923.8 gi|383318475|ref|YP_005379316.1| - 0.035 14.0 0.0 0.12 12.2 0.0 1.9 1 0 0 1 1 1 0 NFACT protein C-terminal domain GldM_N PF12081.8 gi|383318475|ref|YP_005379316.1| - 0.67 10.0 4.7 2.7 8.0 0.5 2.6 2 0 0 2 2 2 0 GldM N-terminal domain ChaB PF06150.12 gi|383318475|ref|YP_005379316.1| - 3.3 8.3 6.3 0.37 11.4 0.2 2.7 3 0 0 3 3 3 0 ChaB eRF1_1 PF03463.15 gi|383318476|ref|YP_005379317.1| - 3.4e-26 91.7 0.0 5.6e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|383318476|ref|YP_005379317.1| - 5.4e-25 88.1 0.7 1.5e-24 86.6 0.7 1.8 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|383318476|ref|YP_005379317.1| - 8.2e-11 42.4 0.6 2.3e-10 40.9 0.6 1.7 1 1 0 1 1 1 1 eRF1 domain 2 Snapin_Pallidin PF14712.6 gi|383318479|ref|YP_005379320.1| - 0.022 15.2 0.0 0.041 14.3 0.0 1.4 1 0 0 1 1 1 0 Snapin/Pallidin Rootletin PF15035.6 gi|383318479|ref|YP_005379320.1| - 0.066 13.2 0.0 0.068 13.2 0.0 1.1 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF5376 PF17346.2 gi|383318479|ref|YP_005379320.1| - 0.085 13.2 1.1 0.11 12.9 1.1 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5376) DUF1387 PF07139.11 gi|383318479|ref|YP_005379320.1| - 0.2 11.4 0.2 0.27 11.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1387) DUF948 PF06103.11 gi|383318479|ref|YP_005379320.1| - 0.22 11.8 0.0 0.32 11.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) GCHY-1 PF02649.14 gi|383318480|ref|YP_005379321.1| - 1.8e-82 276.8 0.3 2.1e-82 276.6 0.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|383318480|ref|YP_005379321.1| - 0.007 16.9 0.2 3.3 8.3 0.0 3.1 2 1 1 3 3 3 1 Dihydroneopterin aldolase SnoaL PF07366.12 gi|383318480|ref|YP_005379321.1| - 0.11 12.3 0.1 0.68 9.7 0.1 2.3 2 1 1 3 3 3 0 SnoaL-like polyketide cyclase OrfB_Zn_ribbon PF07282.11 gi|383318481|ref|YP_005379322.1| - 1.1e-18 66.9 0.4 1.8e-18 66.2 0.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|383318481|ref|YP_005379322.1| - 3.3e-09 36.1 1.5 8.2e-09 34.8 1.5 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Rad50_zn_hook PF04423.14 gi|383318481|ref|YP_005379322.1| - 0.086 12.7 0.3 2.2 8.2 0.3 2.7 2 0 0 2 2 2 0 Rad50 zinc hook motif T2SSE PF00437.20 gi|383318483|ref|YP_005379324.1| - 5.8e-38 130.5 0.0 8.1e-38 130.0 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein T2SSF PF00482.23 gi|383318484|ref|YP_005379325.1| - 1.1e-06 28.6 0.1 1.1e-06 28.6 0.1 2.1 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|383318484|ref|YP_005379325.1| - 0.17 10.6 0.8 2 7.1 0.2 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF2964 PF11177.8 gi|383318484|ref|YP_005379325.1| - 6.9 7.0 11.1 0.34 11.1 0.5 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2964) T2SSF PF00482.23 gi|383318485|ref|YP_005379326.1| - 1.1e-09 38.4 0.3 1.1e-09 38.4 0.3 1.9 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F PHO4 PF01384.20 gi|383318485|ref|YP_005379326.1| - 0.016 14.3 1.0 0.022 13.8 1.0 1.1 1 0 0 1 1 1 0 Phosphate transporter family DUF4149 PF13664.6 gi|383318485|ref|YP_005379326.1| - 0.081 13.3 0.6 0.081 13.3 0.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) 2-ph_phosp PF04029.14 gi|383318491|ref|YP_005379332.1| - 2.5e-42 144.6 0.0 3.2e-42 144.3 0.0 1.1 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase Na_H_Exchanger PF00999.21 gi|383318492|ref|YP_005379333.1| - 3.9e-67 226.7 56.5 5.5e-67 226.2 56.5 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|383318492|ref|YP_005379333.1| - 5.1e-22 78.3 0.2 1.3e-21 77.0 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|383318492|ref|YP_005379333.1| - 1.4e-15 56.9 0.0 5.2e-15 55.0 0.0 2.0 1 0 0 1 1 1 1 TrkA-C domain DUF4147 PF13660.6 gi|383318492|ref|YP_005379333.1| - 0.019 14.5 0.2 5.2 6.6 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4147) Castor_Poll_mid PF06241.12 gi|383318492|ref|YP_005379333.1| - 0.096 12.7 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 Castor and Pollux, part of voltage-gated ion channel Flavoprotein PF02441.19 gi|383318493|ref|YP_005379334.1| - 1.6e-39 135.2 0.7 2.4e-39 134.6 0.7 1.3 1 0 0 1 1 1 1 Flavoprotein DFP PF04127.15 gi|383318493|ref|YP_005379334.1| - 4.2e-39 134.3 0.0 7.4e-38 130.2 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Pyr_redox PF00070.27 gi|383318493|ref|YP_005379334.1| - 0.038 14.5 0.1 2.9 8.5 0.0 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GHMP_kinases_N PF00288.26 gi|383318494|ref|YP_005379335.1| - 5.6e-09 36.1 1.5 1.3e-08 35.0 1.5 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|383318494|ref|YP_005379335.1| - 0.0021 18.4 4.0 0.013 15.8 0.0 2.9 2 1 1 3 3 3 1 GHMP kinases C terminal E1-E2_ATPase PF00122.20 gi|383318495|ref|YP_005379336.1| - 3.5e-51 173.3 6.5 3.5e-51 173.3 6.5 3.1 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|383318495|ref|YP_005379336.1| - 1.4e-45 155.3 3.5 2.8e-45 154.3 3.5 1.5 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|383318495|ref|YP_005379336.1| - 4.7e-18 66.3 2.3 7.4e-17 62.3 1.3 2.7 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|383318495|ref|YP_005379336.1| - 5e-17 61.3 0.0 1.2e-16 60.1 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|383318495|ref|YP_005379336.1| - 2.3e-14 53.2 0.0 4.4e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|383318495|ref|YP_005379336.1| - 1e-08 35.3 0.3 3.1e-05 23.9 0.2 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|383318495|ref|YP_005379336.1| - 0.00013 22.5 0.0 0.00027 21.4 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase SBP_bac_3 PF00497.20 gi|383318495|ref|YP_005379336.1| - 0.16 11.4 0.0 0.32 10.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Radical_SAM PF04055.21 gi|383318497|ref|YP_005379338.1| - 4.4e-23 82.5 0.1 8.4e-23 81.6 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|383318497|ref|YP_005379338.1| - 1.6e-08 34.9 0.1 4.2e-08 33.6 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|383318497|ref|YP_005379338.1| - 1.2e-06 28.8 0.0 2.6e-06 27.8 0.0 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|383318497|ref|YP_005379338.1| - 2.1e-05 24.7 0.0 4.4e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Phage_HK97_TLTM PF06120.11 gi|383318499|ref|YP_005379340.1| - 0.0061 15.8 0.4 0.0069 15.6 0.4 1.2 1 0 0 1 1 1 1 Tail length tape measure protein Phage_holin_3_6 PF07332.11 gi|383318499|ref|YP_005379340.1| - 0.015 15.4 6.2 0.023 14.7 6.2 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III EAP30 PF04157.16 gi|383318499|ref|YP_005379340.1| - 0.017 14.4 0.0 0.019 14.3 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family DUF1129 PF06570.11 gi|383318499|ref|YP_005379340.1| - 0.062 12.8 1.5 0.069 12.6 1.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) OAM_alpha PF16552.5 gi|383318499|ref|YP_005379340.1| - 0.12 12.3 0.1 0.38 10.6 0.0 1.7 1 1 1 2 2 2 0 D-ornithine 4,5-aminomutase alpha-subunit AIRS_C PF02769.22 gi|383318500|ref|YP_005379341.1| - 8.8e-25 87.6 0.0 1.4e-24 87.0 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|383318500|ref|YP_005379341.1| - 1.3e-16 61.0 0.6 2.3e-16 60.2 0.6 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain RRM_1 PF00076.22 gi|383318500|ref|YP_005379341.1| - 0.011 15.5 0.0 0.034 14.0 0.0 1.7 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) GLTT PF01744.20 gi|383318500|ref|YP_005379341.1| - 0.032 14.0 2.5 6.6 6.6 0.1 2.9 3 0 0 3 3 3 0 GLTT repeat (6 copies) 2-Hacid_dh_C PF02826.19 gi|383318501|ref|YP_005379342.1| - 6.3e-66 221.1 0.0 1.3e-65 220.0 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|383318501|ref|YP_005379342.1| - 1.9e-41 140.9 0.9 3.5e-41 140.0 0.1 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|383318501|ref|YP_005379342.1| - 2.4e-12 46.4 0.6 8.6e-10 38.2 0.1 3.5 3 0 0 3 3 3 1 ACT domain NAD_binding_2 PF03446.15 gi|383318501|ref|YP_005379342.1| - 0.00012 22.3 0.1 0.00052 20.2 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.15 gi|383318501|ref|YP_005379342.1| - 0.0089 16.4 0.2 1.6 9.2 0.0 2.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACT_4 PF13291.6 gi|383318501|ref|YP_005379342.1| - 0.026 15.1 0.9 0.16 12.6 0.1 2.6 2 0 0 2 2 2 0 ACT domain SpoIIM PF01944.17 gi|383318502|ref|YP_005379343.1| - 0.0041 17.2 16.6 0.0072 16.4 16.4 1.4 1 1 0 1 1 1 1 Stage II sporulation protein M DUF4131 PF13567.6 gi|383318503|ref|YP_005379344.1| - 3.7 7.2 7.7 9.2 5.9 1.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) HTH_3 PF01381.22 gi|383318504|ref|YP_005379345.1| - 1.9e-13 50.2 0.0 2.2e-13 50.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|383318504|ref|YP_005379345.1| - 4.2e-09 36.6 0.0 5.2e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|383318504|ref|YP_005379345.1| - 1.5e-07 31.3 0.0 1.7e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|383318504|ref|YP_005379345.1| - 0.00018 21.8 0.0 0.00021 21.7 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.6 gi|383318504|ref|YP_005379345.1| - 0.00041 20.3 0.0 0.00074 19.4 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_25 PF13413.6 gi|383318504|ref|YP_005379345.1| - 0.0034 17.2 0.0 0.0048 16.7 0.0 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|383318504|ref|YP_005379345.1| - 0.049 13.6 0.0 0.1 12.6 0.0 1.5 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|383318504|ref|YP_005379345.1| - 0.1 12.4 0.0 0.27 11.0 0.0 1.8 2 1 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 gi|383318504|ref|YP_005379345.1| - 0.12 12.1 0.1 0.28 10.9 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family LBP_M PF17385.2 gi|383318504|ref|YP_005379345.1| - 0.16 11.5 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 Lacto-N-biose phosphorylase central domain DHNA PF04038.12 gi|383318505|ref|YP_005379346.1| - 1.3e-41 141.5 0.1 1.4e-41 141.3 0.1 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Tail_P2_I PF09684.10 gi|383318505|ref|YP_005379346.1| - 0.039 13.9 0.0 0.17 11.8 0.0 1.8 1 1 1 2 2 2 0 Phage tail protein (Tail_P2_I) Yip1 PF04893.17 gi|383318506|ref|YP_005379347.1| - 9.7e-21 74.2 18.2 1.2e-20 74.0 18.2 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|383318506|ref|YP_005379347.1| - 3.4e-15 56.3 13.8 4.1e-15 56.0 13.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) DHHA1 PF02272.19 gi|383318508|ref|YP_005379349.1| - 3.8e-11 43.6 0.8 7e-11 42.7 0.8 1.5 1 1 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|383318508|ref|YP_005379349.1| - 1.4e-05 25.3 0.0 2.4e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 DHH family Pribosyltran_N PF13793.6 gi|383318509|ref|YP_005379350.1| - 1.7e-24 86.0 0.0 4.5e-21 74.9 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|383318509|ref|YP_005379350.1| - 7.1e-21 74.4 1.7 7.6e-17 61.3 0.4 2.6 2 0 0 2 2 2 2 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|383318509|ref|YP_005379350.1| - 3.2e-12 46.9 0.3 3.5e-10 40.2 0.1 2.2 2 0 0 2 2 2 2 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|383318509|ref|YP_005379350.1| - 0.0008 18.9 0.0 0.002 17.6 0.0 1.6 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|383318509|ref|YP_005379350.1| - 0.015 14.8 0.1 0.03 13.8 0.1 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase eIF2_C PF09173.11 gi|383318510|ref|YP_005379351.1| - 5.4e-32 109.9 0.4 1.4e-31 108.6 0.4 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|383318510|ref|YP_005379351.1| - 3.1e-29 101.9 2.2 3.1e-28 98.7 2.2 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|383318510|ref|YP_005379351.1| - 7.9e-06 26.2 0.8 7.9e-06 26.2 0.8 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|383318510|ref|YP_005379351.1| - 9.8e-05 22.3 1.8 0.00071 19.5 0.2 2.3 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|383318510|ref|YP_005379351.1| - 0.0023 18.0 0.0 0.0075 16.3 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|383318510|ref|YP_005379351.1| - 0.0058 16.4 2.7 2 8.1 0.4 3.0 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|383318510|ref|YP_005379351.1| - 0.016 15.2 0.3 0.035 14.1 0.3 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|383318510|ref|YP_005379351.1| - 0.05 13.1 1.1 7.1 6.1 0.3 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B HypA PF01155.19 gi|383318510|ref|YP_005379351.1| - 0.11 12.5 0.6 0.33 11.0 0.6 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PIN_9 PF18477.1 gi|383318511|ref|YP_005379352.1| - 4e-40 136.8 0.1 4.5e-40 136.6 0.1 1.0 1 0 0 1 1 1 1 PIN like domain XPG_I_2 PF12813.7 gi|383318511|ref|YP_005379352.1| - 5e-05 22.9 0.1 6.2e-05 22.6 0.1 1.1 1 0 0 1 1 1 1 XPG domain containing Fcf1 PF04900.12 gi|383318511|ref|YP_005379352.1| - 0.002 18.5 0.0 0.0026 18.1 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.6 gi|383318511|ref|YP_005379352.1| - 0.033 14.5 0.0 0.31 11.3 0.0 2.0 1 1 1 2 2 2 0 PIN domain XPG_I PF00867.18 gi|383318511|ref|YP_005379352.1| - 0.081 13.3 0.0 0.14 12.6 0.0 1.3 1 0 0 1 1 1 0 XPG I-region PIN_10 PF18478.1 gi|383318511|ref|YP_005379352.1| - 0.096 12.9 0.0 0.18 12.1 0.0 1.5 1 1 0 1 1 1 0 PIN like domain SHS2_Rpb7-N PF03876.17 gi|383318512|ref|YP_005379353.1| - 2.5e-19 69.4 0.1 4.3e-19 68.6 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|383318512|ref|YP_005379353.1| - 2.3e-12 47.0 0.5 5e-12 46.0 0.5 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|383318512|ref|YP_005379353.1| - 0.0048 17.1 0.2 0.0081 16.4 0.1 1.5 2 0 0 2 2 2 1 RNA polymerase III subunit Rpc25 IDEAL PF08858.10 gi|383318512|ref|YP_005379353.1| - 0.013 15.2 0.0 0.12 12.1 0.0 2.3 2 0 0 2 2 2 0 IDEAL domain S1_2 PF13509.6 gi|383318512|ref|YP_005379353.1| - 0.037 14.1 0.0 1.5 8.9 0.0 2.4 1 1 0 1 1 1 0 S1 domain Lactamase_B PF00753.27 gi|383318513|ref|YP_005379354.1| - 3e-12 46.9 0.4 4.6e-12 46.4 0.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|383318513|ref|YP_005379354.1| - 0.0041 16.7 0.1 0.0066 16.0 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|383318513|ref|YP_005379354.1| - 0.01 15.8 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain CbiX PF01903.17 gi|383318514|ref|YP_005379355.1| - 3e-26 91.8 0.0 3.4e-26 91.6 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|383318514|ref|YP_005379355.1| - 3.7e-06 26.5 0.0 4.3e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|383318514|ref|YP_005379355.1| - 1.1e-05 24.8 0.0 1.7e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Ferrochelatase Creatininase PF02633.14 gi|383318514|ref|YP_005379355.1| - 0.076 12.5 0.0 8.5 5.8 0.0 2.7 2 1 1 3 3 3 0 Creatinine amidohydrolase Mur_ligase_M PF08245.12 gi|383318515|ref|YP_005379356.1| - 4.5e-06 26.8 0.0 6.5e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Mur ligase middle domain Oxidored_nitro PF00148.19 gi|383318516|ref|YP_005379357.1| - 2.8e-17 62.6 0.1 3.5e-17 62.3 0.1 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Fer4_NifH PF00142.18 gi|383318517|ref|YP_005379358.1| - 6.8e-89 297.9 1.2 7.8e-89 297.7 1.2 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|383318517|ref|YP_005379358.1| - 1.9e-12 47.2 0.2 6.3e-12 45.5 0.2 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|383318517|ref|YP_005379358.1| - 1.6e-11 44.3 0.0 3.6e-11 43.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|383318517|ref|YP_005379358.1| - 1.8e-08 34.5 0.2 3.5e-08 33.6 0.1 1.5 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|383318517|ref|YP_005379358.1| - 1.1e-05 24.8 1.6 2.9e-05 23.4 0.7 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|383318517|ref|YP_005379358.1| - 0.00021 20.7 0.2 0.0066 15.8 0.0 2.3 2 0 0 2 2 2 1 ATPase MipZ MeaB PF03308.16 gi|383318517|ref|YP_005379358.1| - 0.0018 17.3 0.2 0.0035 16.4 0.2 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|383318517|ref|YP_005379358.1| - 0.0037 17.0 0.1 0.0052 16.5 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|383318517|ref|YP_005379358.1| - 0.012 15.9 0.1 0.037 14.4 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_26 PF13500.6 gi|383318517|ref|YP_005379358.1| - 0.032 14.1 0.4 0.44 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|383318517|ref|YP_005379358.1| - 0.036 14.2 0.2 0.066 13.3 0.2 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain SRP54 PF00448.22 gi|383318517|ref|YP_005379358.1| - 0.038 13.6 1.3 0.061 12.9 0.3 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 gi|383318517|ref|YP_005379358.1| - 0.13 12.6 0.2 1.1 9.7 0.2 2.3 2 1 1 3 3 3 0 RNA helicase NTPase_1 PF03266.15 gi|383318517|ref|YP_005379358.1| - 0.14 12.0 2.1 4.1 7.3 0.8 3.0 2 2 0 2 2 2 0 NTPase gp45-slide_C PF09116.10 gi|383318517|ref|YP_005379358.1| - 0.16 12.0 0.0 0.95 9.6 0.0 2.1 2 0 0 2 2 2 0 gp45 sliding clamp, C terminal AAA PF00004.29 gi|383318517|ref|YP_005379358.1| - 0.16 12.4 0.1 0.31 11.5 0.1 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) GST_N_3 PF13417.6 gi|383318517|ref|YP_005379358.1| - 0.19 12.2 0.0 0.52 10.8 0.0 1.8 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain GATase_3 PF07685.14 gi|383318518|ref|YP_005379359.1| - 1.8e-43 148.4 0.0 3.1e-43 147.7 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|383318518|ref|YP_005379359.1| - 3.6e-20 72.3 0.1 7.3e-20 71.3 0.1 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|383318518|ref|YP_005379359.1| - 4.4e-20 72.3 0.2 5.3e-15 55.8 0.1 2.3 2 0 0 2 2 2 2 AAA domain SNO PF01174.19 gi|383318518|ref|YP_005379359.1| - 0.026 14.4 0.0 0.062 13.1 0.0 1.6 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Filament PF00038.21 gi|383318519|ref|YP_005379360.1| - 7.1e-06 25.8 24.2 1.8e-05 24.5 18.5 8.0 1 1 4 6 6 4 2 Intermediate filament protein DUF3584 PF12128.8 gi|383318519|ref|YP_005379360.1| - 7.4e-06 23.8 20.5 7.4e-06 23.8 20.5 5.6 1 1 3 5 5 5 2 Protein of unknown function (DUF3584) Apolipoprotein PF01442.18 gi|383318519|ref|YP_005379360.1| - 1e-05 25.5 28.5 2.5e-05 24.3 13.9 8.8 2 1 5 8 8 6 3 Apolipoprotein A1/A4/E domain AAA_13 PF13166.6 gi|383318519|ref|YP_005379360.1| - 1.9e-05 23.6 32.3 0.00013 20.8 8.3 7.5 1 1 7 9 9 7 5 AAA domain TPR_MLP1_2 PF07926.12 gi|383318519|ref|YP_005379360.1| - 0.00025 21.1 1.0 0.00025 21.1 1.0 12.5 5 2 9 14 14 12 5 TPR/MLP1/MLP2-like protein FAM184 PF15665.5 gi|383318519|ref|YP_005379360.1| - 0.00031 20.6 11.4 0.00031 20.6 11.4 8.0 2 1 8 10 10 9 2 Family with sequence similarity 184, A and B Rab5-bind PF09311.11 gi|383318519|ref|YP_005379360.1| - 0.0011 18.5 11.9 0.0011 18.5 11.9 8.0 3 1 5 8 8 7 2 Rabaptin-like protein Fez1 PF06818.15 gi|383318519|ref|YP_005379360.1| - 0.002 18.6 2.3 0.002 18.6 2.3 9.2 2 1 5 9 9 7 4 Fez1 DUF16 PF01519.16 gi|383318519|ref|YP_005379360.1| - 0.0049 17.3 0.4 0.0049 17.3 0.4 13.1 4 3 7 11 11 8 2 Protein of unknown function DUF16 Golgin_A5 PF09787.9 gi|383318519|ref|YP_005379360.1| - 0.0056 16.2 8.1 0.0056 16.2 8.1 8.2 2 1 4 9 9 9 3 Golgin subfamily A member 5 DUF1655 PF07868.11 gi|383318519|ref|YP_005379360.1| - 0.036 14.1 0.2 0.091 12.8 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1655) DUF1664 PF07889.12 gi|383318519|ref|YP_005379360.1| - 0.053 13.6 0.1 0.053 13.6 0.1 13.3 2 1 10 15 15 15 0 Protein of unknown function (DUF1664) ADIP PF11559.8 gi|383318519|ref|YP_005379360.1| - 0.099 12.7 0.1 0.099 12.7 0.1 11.0 4 1 6 12 12 12 0 Afadin- and alpha -actinin-Binding XhlA PF10779.9 gi|383318519|ref|YP_005379360.1| - 2.2 8.6 0.0 2.2 8.6 0.0 12.5 12 4 5 17 17 14 0 Haemolysin XhlA Ribosomal_L16 PF00252.18 gi|383318520|ref|YP_005379361.1| - 1.5e-36 125.3 0.1 1.7e-36 125.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e THUMP PF02926.17 gi|383318520|ref|YP_005379361.1| - 0.0026 17.9 0.0 0.025 14.7 0.0 2.0 2 0 0 2 2 2 1 THUMP domain PYNP_C PF07831.13 gi|383318520|ref|YP_005379361.1| - 0.0099 15.5 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain T7SS_ESX_EspC PF10824.8 gi|383318520|ref|YP_005379361.1| - 0.12 12.8 0.1 0.28 11.7 0.0 1.6 2 0 0 2 2 2 0 Excreted virulence factor EspC, type VII ESX diderm TPR_8 PF13181.6 gi|383318520|ref|YP_005379361.1| - 0.15 12.4 0.1 0.33 11.3 0.1 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat ABC_tran PF00005.27 gi|383318521|ref|YP_005379362.1| - 9.4e-38 129.8 0.1 1.3e-37 129.4 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383318521|ref|YP_005379362.1| - 3.1e-12 46.9 0.0 6.5e-06 26.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383318521|ref|YP_005379362.1| - 4.2e-11 42.7 1.1 1.2e-10 41.2 1.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|383318521|ref|YP_005379362.1| - 2.6e-05 24.5 0.2 0.00019 21.7 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|383318521|ref|YP_005379362.1| - 3.3e-05 23.5 0.0 8.4e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|383318521|ref|YP_005379362.1| - 6.5e-05 23.4 0.0 0.0001 22.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|383318521|ref|YP_005379362.1| - 6.5e-05 23.5 0.1 0.00019 22.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|383318521|ref|YP_005379362.1| - 0.00035 20.6 0.4 0.0021 18.0 0.4 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|383318521|ref|YP_005379362.1| - 0.00039 20.4 0.1 0.0007 19.6 0.1 1.5 1 1 0 1 1 1 1 Rad17 P-loop domain ABC_ATPase PF09818.9 gi|383318521|ref|YP_005379362.1| - 0.00042 19.3 0.7 0.27 10.0 0.0 2.3 2 0 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|383318521|ref|YP_005379362.1| - 0.00083 19.3 0.4 0.0039 17.1 0.1 2.0 1 1 1 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 gi|383318521|ref|YP_005379362.1| - 0.0012 18.6 0.0 0.027 14.2 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|383318521|ref|YP_005379362.1| - 0.0023 17.7 0.1 0.0045 16.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain G-alpha PF00503.20 gi|383318521|ref|YP_005379362.1| - 0.0032 16.7 0.0 0.0037 16.5 0.0 1.3 1 1 0 1 1 1 1 G-protein alpha subunit AAA_18 PF13238.6 gi|383318521|ref|YP_005379362.1| - 0.0033 18.0 0.0 0.0079 16.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|383318521|ref|YP_005379362.1| - 0.005 15.9 0.1 0.028 13.5 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_5 PF07728.14 gi|383318521|ref|YP_005379362.1| - 0.0051 16.8 0.0 1.3 9.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|383318521|ref|YP_005379362.1| - 0.0055 15.9 0.7 0.03 13.5 0.7 1.9 1 1 0 1 1 1 1 NB-ARC domain cobW PF02492.19 gi|383318521|ref|YP_005379362.1| - 0.0077 15.8 0.1 0.014 15.0 0.1 1.8 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain TK PF00265.18 gi|383318521|ref|YP_005379362.1| - 0.012 15.5 0.1 0.2 11.5 0.0 2.2 2 0 0 2 2 2 0 Thymidine kinase Adeno_IVa2 PF02456.15 gi|383318521|ref|YP_005379362.1| - 0.015 14.1 0.2 0.15 10.8 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein PHAT PF09246.10 gi|383318521|ref|YP_005379362.1| - 0.016 15.1 0.4 0.098 12.5 0.0 2.1 2 0 0 2 2 2 0 PHAT AAA PF00004.29 gi|383318521|ref|YP_005379362.1| - 0.016 15.7 2.2 0.73 10.3 2.1 2.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|383318521|ref|YP_005379362.1| - 0.02 15.2 0.7 0.035 14.4 0.7 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|383318521|ref|YP_005379362.1| - 0.021 14.9 0.1 0.7 9.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|383318521|ref|YP_005379362.1| - 0.022 13.5 0.0 0.029 13.1 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_33 PF13671.6 gi|383318521|ref|YP_005379362.1| - 0.034 14.3 0.0 0.066 13.4 0.0 1.7 2 1 0 2 2 1 0 AAA domain Mg_chelatase PF01078.21 gi|383318521|ref|YP_005379362.1| - 0.047 13.1 0.1 0.23 10.8 0.0 2.0 1 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|383318521|ref|YP_005379362.1| - 0.079 12.7 0.2 0.8 9.4 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_13 PF13166.6 gi|383318521|ref|YP_005379362.1| - 0.084 11.5 0.0 2.7 6.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|383318521|ref|YP_005379362.1| - 0.087 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|383318521|ref|YP_005379362.1| - 0.088 12.5 0.0 0.25 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|383318521|ref|YP_005379362.1| - 0.088 13.1 0.6 1 9.6 0.6 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|383318521|ref|YP_005379362.1| - 0.12 12.2 0.1 0.33 10.8 0.1 1.7 1 1 1 2 2 2 0 NACHT domain BPD_transp_1 PF00528.22 gi|383318522|ref|YP_005379363.1| - 8.5e-20 71.3 8.4 1.8e-19 70.2 8.4 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PEGA PF08308.11 gi|383318522|ref|YP_005379363.1| - 1.1e-13 50.8 0.4 4e-09 36.2 0.2 2.6 2 0 0 2 2 2 2 PEGA domain CarboxypepD_reg PF13620.6 gi|383318522|ref|YP_005379363.1| - 2.9e-09 37.0 2.0 3.7e-05 23.9 0.1 2.8 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|383318522|ref|YP_005379363.1| - 4.1e-08 33.1 0.2 0.0028 17.6 0.0 2.5 2 0 0 2 2 2 2 CarboxypepD_reg-like domain DUF2846 PF11008.8 gi|383318522|ref|YP_005379363.1| - 0.00059 19.8 0.0 0.0085 16.1 0.0 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF2846) fn3_3 PF14686.6 gi|383318522|ref|YP_005379363.1| - 0.017 14.9 0.0 5.2 6.9 0.0 2.5 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II SBP_bac_3 PF00497.20 gi|383318523|ref|YP_005379364.1| - 7.5e-66 221.8 1.5 8.6e-66 221.6 1.5 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|383318523|ref|YP_005379364.1| - 6.4e-10 39.2 0.2 3.5e-08 33.6 0.2 2.3 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|383318523|ref|YP_005379364.1| - 7.8e-06 26.0 0.7 1.4e-05 25.2 0.7 1.4 1 0 0 1 1 1 1 NMT1/THI5 like Gpr1_Fun34_YaaH PF01184.19 gi|383318525|ref|YP_005379366.1| - 7.5e-40 136.7 20.8 9.5e-40 136.4 20.8 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family PBP PF01161.20 gi|383318526|ref|YP_005379367.1| - 2.4e-41 141.2 0.0 2.8e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DUF2178 PF09946.9 gi|383318527|ref|YP_005379368.1| - 0.00029 21.0 4.8 0.00048 20.3 4.8 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF3623 PF12291.8 gi|383318527|ref|YP_005379368.1| - 0.083 12.1 3.3 0.12 11.5 3.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3623) DUF2070 PF09843.9 gi|383318527|ref|YP_005379368.1| - 0.68 8.2 7.5 0.76 8.0 7.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2208 PF09973.9 gi|383318527|ref|YP_005379368.1| - 1.4 8.5 6.8 0.64 9.6 4.9 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2208) DUF2892 PF11127.8 gi|383318527|ref|YP_005379368.1| - 9.4 6.4 10.2 0.9 9.6 2.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) HTH_3 PF01381.22 gi|383318528|ref|YP_005379369.1| - 5.3e-18 64.8 0.0 6e-18 64.7 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|383318528|ref|YP_005379369.1| - 5.6e-13 48.7 0.1 6.3e-13 48.5 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|383318528|ref|YP_005379369.1| - 2.4e-12 47.0 0.0 2.9e-12 46.8 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|383318528|ref|YP_005379369.1| - 1.6e-06 28.4 0.0 2e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|383318528|ref|YP_005379369.1| - 8.8e-06 25.5 0.1 1.2e-05 25.1 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|383318528|ref|YP_005379369.1| - 9.6e-05 22.3 0.2 0.00023 21.1 0.1 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|383318528|ref|YP_005379369.1| - 9.6e-05 21.8 0.1 0.00014 21.3 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|383318528|ref|YP_005379369.1| - 0.00078 19.0 0.0 0.0011 18.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|383318528|ref|YP_005379369.1| - 0.00078 19.3 0.0 0.0011 18.9 0.0 1.2 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|383318528|ref|YP_005379369.1| - 0.0057 16.3 0.0 0.0076 15.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF1323 PF07037.11 gi|383318528|ref|YP_005379369.1| - 0.0061 16.9 0.0 0.0091 16.4 0.0 1.3 1 0 0 1 1 1 1 Putative transcription regulator (DUF1323) HTH_38 PF13936.6 gi|383318528|ref|YP_005379369.1| - 0.0074 16.0 0.1 0.013 15.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|383318528|ref|YP_005379369.1| - 0.012 15.4 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 gi|383318528|ref|YP_005379369.1| - 0.02 15.0 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|383318528|ref|YP_005379369.1| - 0.024 14.5 0.0 0.035 13.9 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|383318528|ref|YP_005379369.1| - 0.038 13.9 0.0 0.051 13.5 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_Tnp_1_2 PF13022.6 gi|383318528|ref|YP_005379369.1| - 0.047 13.8 0.0 0.058 13.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase YdaS_antitoxin PF15943.5 gi|383318528|ref|YP_005379369.1| - 0.058 13.3 0.0 0.071 13.0 0.0 1.3 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_4 PF13613.6 gi|383318528|ref|YP_005379369.1| - 0.077 12.7 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_37 PF13744.6 gi|383318528|ref|YP_005379369.1| - 0.081 12.9 0.1 0.097 12.6 0.1 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain TnsD PF15978.5 gi|383318528|ref|YP_005379369.1| - 0.099 11.6 0.0 0.11 11.4 0.0 1.0 1 0 0 1 1 1 0 Tn7-like transposition protein D DUF134 PF02001.16 gi|383318528|ref|YP_005379369.1| - 0.12 12.9 0.0 0.16 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF134 CCG PF02754.16 gi|383318529|ref|YP_005379370.1| - 4.9e-19 68.3 5.9 3.2e-12 46.5 0.1 3.5 3 1 0 3 3 3 2 Cysteine-rich domain APH PF01636.23 gi|383318530|ref|YP_005379371.1| - 2.7e-09 37.3 0.1 2.8e-05 24.1 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.22 gi|383318530|ref|YP_005379371.1| - 0.0049 16.5 0.0 0.0067 16.0 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Phosphodiest PF01663.22 gi|383318531|ref|YP_005379372.1| - 2.3e-15 57.0 0.0 1.4e-12 47.9 0.0 2.1 1 1 1 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|383318531|ref|YP_005379372.1| - 5.7e-07 29.2 0.0 1.1e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|383318531|ref|YP_005379372.1| - 0.0018 17.7 0.0 0.0032 16.9 0.0 1.5 2 0 0 2 2 2 1 Sulfatase PglZ PF08665.12 gi|383318531|ref|YP_005379372.1| - 0.016 15.3 0.0 0.43 10.6 0.0 2.2 1 1 0 1 1 1 0 PglZ domain T2SSB PF16537.5 gi|383318532|ref|YP_005379373.1| - 0.15 11.7 0.2 12 5.6 0.0 2.4 2 0 0 2 2 2 0 Type II secretion system protein B Oxidored_molyb PF00174.19 gi|383318533|ref|YP_005379374.1| - 3.2e-11 43.2 0.0 1.3e-05 24.9 0.0 3.9 1 1 2 3 3 3 3 Oxidoreductase molybdopterin binding domain CbiQ PF02361.16 gi|383318534|ref|YP_005379375.1| - 4.1e-35 121.4 14.4 5.1e-35 121.1 14.4 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|383318535|ref|YP_005379376.1| - 1.4e-49 168.1 0.0 6.9e-26 91.4 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|383318535|ref|YP_005379376.1| - 9.4e-18 65.1 1.1 2e-05 24.5 0.0 4.1 4 0 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383318535|ref|YP_005379376.1| - 2.8e-12 46.5 0.0 8.9e-05 22.0 0.0 3.6 3 1 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|383318535|ref|YP_005379376.1| - 4e-08 32.9 0.5 0.0079 15.9 0.1 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|383318535|ref|YP_005379376.1| - 6.6e-08 33.3 0.2 0.0057 17.2 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|383318535|ref|YP_005379376.1| - 4.9e-07 29.5 0.1 0.0084 15.7 0.0 3.3 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|383318535|ref|YP_005379376.1| - 2.8e-06 27.8 1.7 0.0058 17.0 0.2 2.7 2 1 0 2 2 2 2 AAA ATPase domain Rad17 PF03215.15 gi|383318535|ref|YP_005379376.1| - 3.8e-06 26.9 0.0 0.11 12.4 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_22 PF13401.6 gi|383318535|ref|YP_005379376.1| - 4.7e-06 26.9 1.5 0.046 14.0 0.3 2.9 2 1 0 2 2 2 2 AAA domain MeaB PF03308.16 gi|383318535|ref|YP_005379376.1| - 5.4e-06 25.6 1.8 0.018 14.0 0.4 2.3 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|383318535|ref|YP_005379376.1| - 1.3e-05 25.1 0.2 0.0026 17.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|383318535|ref|YP_005379376.1| - 1.6e-05 25.4 0.4 0.26 11.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.6 gi|383318535|ref|YP_005379376.1| - 2.8e-05 24.3 0.0 0.64 10.3 0.0 3.2 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|383318535|ref|YP_005379376.1| - 3.3e-05 23.9 0.5 0.26 11.2 0.2 2.4 2 0 0 2 2 2 2 NACHT domain AAA_33 PF13671.6 gi|383318535|ref|YP_005379376.1| - 3.5e-05 24.0 1.2 0.02 15.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|383318535|ref|YP_005379376.1| - 4.8e-05 22.9 0.1 0.14 11.6 0.0 3.0 3 0 0 3 3 3 2 PhoH-like protein AAA_28 PF13521.6 gi|383318535|ref|YP_005379376.1| - 7.1e-05 23.1 0.8 0.25 11.6 0.1 2.4 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|383318535|ref|YP_005379376.1| - 8.5e-05 22.4 0.1 0.28 10.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|383318535|ref|YP_005379376.1| - 0.00012 22.0 0.0 0.58 10.0 0.0 2.6 3 0 0 3 3 2 2 ATPase domain predominantly from Archaea AAA PF00004.29 gi|383318535|ref|YP_005379376.1| - 0.00018 22.0 0.2 0.58 10.6 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|383318535|ref|YP_005379376.1| - 0.0002 21.1 0.4 0.012 15.4 0.0 2.7 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|383318535|ref|YP_005379376.1| - 0.00024 21.1 0.0 1.1 9.3 0.0 2.8 3 0 0 3 3 2 2 AAA domain RsgA_GTPase PF03193.16 gi|383318535|ref|YP_005379376.1| - 0.00036 20.5 0.8 0.09 12.7 0.1 2.3 2 0 0 2 2 2 1 RsgA GTPase NB-ARC PF00931.22 gi|383318535|ref|YP_005379376.1| - 0.00063 19.0 1.0 0.44 9.7 0.1 2.3 2 0 0 2 2 2 2 NB-ARC domain ATP_bind_1 PF03029.17 gi|383318535|ref|YP_005379376.1| - 0.0009 19.1 0.6 0.023 14.5 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_15 PF13175.6 gi|383318535|ref|YP_005379376.1| - 0.0011 18.8 0.0 0.087 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.15 gi|383318535|ref|YP_005379376.1| - 0.0024 17.8 0.2 0.8 9.6 0.0 2.8 3 0 0 3 3 2 1 NTPase RNA_helicase PF00910.22 gi|383318535|ref|YP_005379376.1| - 0.0041 17.5 0.3 0.77 10.2 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_13 PF13166.6 gi|383318535|ref|YP_005379376.1| - 0.0051 15.5 0.0 0.37 9.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|383318535|ref|YP_005379376.1| - 0.0063 15.9 0.3 1 8.7 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI PRK PF00485.18 gi|383318535|ref|YP_005379376.1| - 0.0064 16.2 0.8 0.25 11.0 0.1 2.2 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 gi|383318535|ref|YP_005379376.1| - 0.0072 16.4 0.1 6.5 6.9 0.1 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase Cytidylate_kin PF02224.18 gi|383318535|ref|YP_005379376.1| - 0.012 15.4 0.3 0.55 9.9 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase AAA_19 PF13245.6 gi|383318535|ref|YP_005379376.1| - 0.014 15.7 0.3 0.53 10.6 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|383318535|ref|YP_005379376.1| - 0.015 15.3 3.0 6.2 6.8 0.1 3.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|383318535|ref|YP_005379376.1| - 0.02 14.0 0.1 4.4 6.3 0.1 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein cobW PF02492.19 gi|383318535|ref|YP_005379376.1| - 0.026 14.1 3.2 0.16 11.5 0.4 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Adeno_IVa2 PF02456.15 gi|383318535|ref|YP_005379376.1| - 0.033 13.0 0.1 2 7.1 0.0 2.4 3 0 0 3 3 2 0 Adenovirus IVa2 protein FtsK_SpoIIIE PF01580.18 gi|383318535|ref|YP_005379376.1| - 0.041 13.2 0.0 0.21 10.9 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family CbiA PF01656.23 gi|383318535|ref|YP_005379376.1| - 0.054 13.6 0.1 13 5.9 0.0 2.4 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.22 gi|383318535|ref|YP_005379376.1| - 0.054 13.1 0.1 0.31 10.6 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|383318535|ref|YP_005379376.1| - 0.083 12.7 0.1 0.76 9.5 0.0 2.2 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop TsaE PF02367.17 gi|383318535|ref|YP_005379376.1| - 0.087 12.8 0.1 7.4 6.6 0.0 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_ATPase PF09818.9 gi|383318535|ref|YP_005379376.1| - 0.098 11.4 5.3 4 6.1 0.1 3.8 3 1 0 3 3 3 0 Predicted ATPase of the ABC class MobB PF03205.14 gi|383318535|ref|YP_005379376.1| - 0.1 12.5 1.0 0.87 9.5 0.2 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_27 PF13514.6 gi|383318535|ref|YP_005379376.1| - 0.13 11.9 0.0 4.9 6.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|383318535|ref|YP_005379376.1| - 0.18 11.5 0.1 19 4.9 0.0 2.9 3 0 0 3 3 3 0 AAA domain ATPase PF06745.13 gi|383318535|ref|YP_005379376.1| - 0.22 10.9 0.3 1.8 7.9 0.0 2.2 2 0 0 2 2 2 0 KaiC PduV-EutP PF10662.9 gi|383318535|ref|YP_005379376.1| - 0.25 11.1 0.4 10 5.9 0.1 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF87 PF01935.17 gi|383318535|ref|YP_005379376.1| - 0.25 11.4 0.5 10 6.2 0.1 2.7 3 0 0 3 3 3 0 Helicase HerA, central domain AAA_17 PF13207.6 gi|383318535|ref|YP_005379376.1| - 0.35 11.3 1.1 30 5.0 0.1 2.6 2 0 0 2 2 2 0 AAA domain dNK PF01712.19 gi|383318535|ref|YP_005379376.1| - 0.37 10.6 0.7 32 4.3 0.1 2.8 3 0 0 3 3 3 0 Deoxynucleoside kinase Oxidored_molyb PF00174.19 gi|383318536|ref|YP_005379377.1| - 3.4e-08 33.3 0.1 1.1e-05 25.1 0.1 2.9 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain ABC_cobalt PF09819.9 gi|383318537|ref|YP_005379378.1| - 1.3e-16 60.8 10.9 1.3e-16 60.8 10.9 2.3 2 1 1 3 3 3 1 ABC-type cobalt transport system, permease component Oxidored_molyb PF00174.19 gi|383318537|ref|YP_005379378.1| - 3.7e-06 26.7 0.0 7.5e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cytochrom_C_asm PF01578.20 gi|383318538|ref|YP_005379379.1| - 1.3e-39 136.2 20.3 1.3e-39 136.2 20.3 1.4 2 0 0 2 2 2 1 Cytochrome C assembly protein DUF2214 PF09980.9 gi|383318538|ref|YP_005379379.1| - 0.59 9.9 9.8 1.8 8.3 1.0 3.4 3 1 0 3 3 3 0 Predicted membrane protein (DUF2214) PGPGW PF09656.10 gi|383318538|ref|YP_005379379.1| - 8.1 6.0 9.5 12 5.5 0.1 3.3 3 0 0 3 3 3 0 Putative transmembrane protein (PGPGW) TPR_1 PF00515.28 gi|383318539|ref|YP_005379380.1| - 2.9e-21 74.3 6.5 1.6e-05 24.5 1.1 4.7 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|383318539|ref|YP_005379380.1| - 1.2e-19 68.8 6.4 6e-06 26.0 0.7 4.7 4 1 0 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|383318539|ref|YP_005379380.1| - 4.8e-17 60.7 1.3 0.00021 21.2 0.1 4.6 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|383318539|ref|YP_005379380.1| - 1.9e-14 53.0 6.5 2.5e-06 27.1 0.0 4.3 2 1 3 5 5 5 2 TPR repeat TPR_16 PF13432.6 gi|383318539|ref|YP_005379380.1| - 1.1e-12 48.4 1.3 3.4e-07 30.8 0.0 3.5 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|383318539|ref|YP_005379380.1| - 1.9e-11 44.1 2.2 1e-06 28.9 1.7 3.8 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|383318539|ref|YP_005379380.1| - 2.8e-11 43.8 2.7 0.0021 18.5 0.9 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|383318539|ref|YP_005379380.1| - 3.9e-11 42.9 0.2 4.6e-06 26.7 0.0 2.8 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|383318539|ref|YP_005379380.1| - 1.5e-10 40.7 1.4 0.00031 20.9 0.1 3.6 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383318539|ref|YP_005379380.1| - 8.3e-10 38.0 1.3 0.28 11.3 0.2 4.4 3 1 0 4 4 4 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|383318539|ref|YP_005379380.1| - 2.2e-09 36.9 4.2 0.00058 19.7 0.3 3.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|383318539|ref|YP_005379380.1| - 3.3e-07 30.6 4.6 0.32 11.9 0.2 5.0 2 1 3 5 5 5 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|383318539|ref|YP_005379380.1| - 0.00017 21.7 0.1 2.1 8.4 0.0 3.4 1 1 2 3 3 3 1 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|383318539|ref|YP_005379380.1| - 0.00028 19.9 0.1 0.00028 19.9 0.1 2.5 1 1 2 3 3 3 1 NMDA receptor-regulated protein 1 TPR_4 PF07721.14 gi|383318539|ref|YP_005379380.1| - 0.00064 20.1 0.1 0.047 14.3 0.0 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|383318539|ref|YP_005379380.1| - 0.00067 20.1 0.5 29 5.6 0.1 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|383318539|ref|YP_005379380.1| - 0.0011 18.5 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 Coatomer epsilon subunit HrpB1_HrpK PF09613.10 gi|383318539|ref|YP_005379380.1| - 0.0011 18.6 0.0 0.009 15.6 0.0 2.1 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB1_HrpK) BTAD PF03704.17 gi|383318539|ref|YP_005379380.1| - 0.0022 18.4 0.1 0.13 12.7 0.0 2.7 2 2 0 2 2 2 1 Bacterial transcriptional activator domain ANAPC3 PF12895.7 gi|383318539|ref|YP_005379380.1| - 0.0022 18.2 0.7 0.0058 16.8 0.4 1.8 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|383318539|ref|YP_005379380.1| - 0.0027 17.7 0.7 7.8 6.7 0.0 3.6 3 1 1 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|383318539|ref|YP_005379380.1| - 0.0037 17.3 0.1 0.011 15.8 0.1 1.7 1 1 0 1 1 1 1 Putative TPR-like repeat PSDC PF12588.8 gi|383318539|ref|YP_005379380.1| - 0.068 13.2 0.0 0.14 12.1 0.0 1.5 2 0 0 2 2 1 0 Phophatidylserine decarboxylase DUF5113 PF17140.4 gi|383318539|ref|YP_005379380.1| - 0.095 12.5 0.1 0.69 9.7 0.1 2.2 2 1 1 3 3 3 0 Domain of unknown function (DUF5113) TPR_20 PF14561.6 gi|383318539|ref|YP_005379380.1| - 0.56 10.6 4.6 3.2 8.1 0.3 3.0 2 2 0 2 2 2 0 Tetratricopeptide repeat CBFD_NFYB_HMF PF00808.23 gi|383318540|ref|YP_005379381.1| - 6.9e-19 67.9 0.5 8.4e-19 67.6 0.5 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|383318540|ref|YP_005379381.1| - 7.1e-09 36.1 0.1 8e-09 36.0 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|383318540|ref|YP_005379381.1| - 1.5e-07 31.5 0.1 1.7e-07 31.3 0.1 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|383318540|ref|YP_005379381.1| - 0.00014 22.2 0.1 0.00019 21.7 0.1 1.4 1 1 0 1 1 1 1 CENP-S protein Bromo_TP PF07524.13 gi|383318540|ref|YP_005379381.1| - 0.00018 21.4 0.0 0.0002 21.3 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TFIID-31kDa PF02291.15 gi|383318540|ref|YP_005379381.1| - 0.00093 19.3 0.0 0.001 19.1 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.13 gi|383318540|ref|YP_005379381.1| - 0.001 19.5 0.2 0.0011 19.4 0.2 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TAF PF02969.17 gi|383318540|ref|YP_005379381.1| - 0.012 15.8 0.6 0.013 15.6 0.6 1.1 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) Con-6 PF10346.9 gi|383318540|ref|YP_005379381.1| - 0.098 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Conidiation protein 6 TFIID-18kDa PF02269.16 gi|383318540|ref|YP_005379381.1| - 0.1 12.6 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit ApbA_C PF08546.11 gi|383318541|ref|YP_005379382.1| - 1.9e-39 134.7 0.1 2.7e-39 134.2 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|383318541|ref|YP_005379382.1| - 3.4e-26 91.7 0.0 4.9e-26 91.2 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|383318541|ref|YP_005379382.1| - 0.0032 17.1 0.1 0.0081 15.8 0.1 1.8 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|383318541|ref|YP_005379382.1| - 0.0043 17.6 0.3 0.018 15.6 0.1 2.2 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|383318541|ref|YP_005379382.1| - 0.057 13.4 0.0 0.23 11.4 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|383318541|ref|YP_005379382.1| - 0.074 12.9 0.1 0.25 11.2 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|383318541|ref|YP_005379382.1| - 0.12 13.0 0.1 0.36 11.4 0.1 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|383318541|ref|YP_005379382.1| - 0.13 11.5 0.3 0.23 10.7 0.3 1.4 1 0 0 1 1 1 0 FAD binding domain GTP-bdg_N PF13167.6 gi|383318542|ref|YP_005379383.1| - 1.9e-27 95.8 0.1 4.1e-27 94.7 0.1 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|383318542|ref|YP_005379383.1| - 6.7e-19 68.1 0.0 1.5e-18 67.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|383318542|ref|YP_005379383.1| - 5.1e-17 62.3 8.2 1.1e-16 61.2 8.2 1.6 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region RsgA_GTPase PF03193.16 gi|383318542|ref|YP_005379383.1| - 2.7e-10 40.4 0.1 0.00066 19.6 0.0 3.1 3 0 0 3 3 3 2 RsgA GTPase FeoB_N PF02421.18 gi|383318542|ref|YP_005379383.1| - 3.6e-08 33.1 0.0 8.9e-08 31.8 0.0 1.7 1 1 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|383318542|ref|YP_005379383.1| - 1e-07 31.9 0.0 2.5e-07 30.6 0.0 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain GTP_EFTU PF00009.27 gi|383318542|ref|YP_005379383.1| - 2e-07 30.7 0.1 0.00021 20.9 0.0 3.1 2 1 0 3 3 3 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|383318542|ref|YP_005379383.1| - 4.1e-05 23.7 0.1 0.00019 21.6 0.0 2.1 1 1 1 2 2 2 1 Dynamin family cobW PF02492.19 gi|383318542|ref|YP_005379383.1| - 0.0013 18.4 0.2 0.29 10.7 0.0 2.6 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MnmE_helical PF12631.7 gi|383318542|ref|YP_005379383.1| - 0.0024 18.1 0.0 0.0037 17.5 0.0 1.3 1 0 0 1 1 1 1 MnmE helical domain ABC_tran PF00005.27 gi|383318542|ref|YP_005379383.1| - 0.0077 16.8 0.0 0.018 15.5 0.0 1.7 1 0 0 1 1 1 1 ABC transporter NOG1 PF06858.14 gi|383318542|ref|YP_005379383.1| - 0.023 14.5 0.0 0.1 12.4 0.0 2.2 1 0 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) GBP PF02263.19 gi|383318542|ref|YP_005379383.1| - 0.045 13.0 0.1 8.2 5.6 0.0 2.2 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain Septin PF00735.18 gi|383318542|ref|YP_005379383.1| - 0.055 12.7 0.1 1.3 8.2 0.0 2.2 2 0 0 2 2 2 0 Septin CLP1_P PF16575.5 gi|383318542|ref|YP_005379383.1| - 0.057 13.2 0.3 7.5 6.3 0.1 2.8 3 0 0 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop PduV-EutP PF10662.9 gi|383318542|ref|YP_005379383.1| - 0.12 12.2 0.0 21 4.8 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.6 gi|383318542|ref|YP_005379383.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.17 gi|383318542|ref|YP_005379383.1| - 0.13 12.0 0.0 1.7 8.4 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF2209 PF09974.9 gi|383318543|ref|YP_005379384.1| - 3.2e-43 146.9 0.4 3.6e-43 146.7 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) ThiI PF02568.14 gi|383318544|ref|YP_005379385.1| - 1.9e-62 210.3 0.0 2.7e-62 209.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|383318544|ref|YP_005379385.1| - 3.7e-20 72.5 0.2 8e-20 71.4 0.2 1.6 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|383318544|ref|YP_005379385.1| - 2.5e-05 23.9 0.0 0.018 14.6 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|383318544|ref|YP_005379385.1| - 0.00058 18.8 0.0 0.00097 18.0 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase Ribosomal_L37ae PF01780.19 gi|383318544|ref|YP_005379385.1| - 0.048 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Ribosomal L37ae protein family NUDIX PF00293.28 gi|383318545|ref|YP_005379386.1| - 1e-17 64.4 0.0 1.3e-17 64.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|383318545|ref|YP_005379386.1| - 0.00024 21.1 0.0 0.00051 20.0 0.0 1.6 1 1 0 1 1 1 1 NUDIX domain Prenyltrans PF00432.21 gi|383318546|ref|YP_005379387.1| - 1.7e-19 69.2 1.4 0.00094 18.9 0.0 6.3 6 0 0 6 6 6 4 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_N PF13249.6 gi|383318546|ref|YP_005379387.1| - 8.6e-06 25.1 0.0 0.59 9.2 0.0 4.0 2 2 2 4 4 4 2 Squalene-hopene cyclase N-terminal domain SQHop_cyclase_C PF13243.6 gi|383318546|ref|YP_005379387.1| - 0.00051 19.2 0.0 1.3 8.1 0.0 2.6 2 1 1 3 3 3 3 Squalene-hopene cyclase C-terminal domain TED_complement PF07678.14 gi|383318546|ref|YP_005379387.1| - 0.026 13.6 0.0 3.8 6.4 0.0 2.7 2 2 0 2 2 2 0 A-macroglobulin TED domain Enolase_C PF00113.22 gi|383318547|ref|YP_005379388.1| - 6.2e-120 399.9 0.6 7.7e-120 399.6 0.6 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|383318547|ref|YP_005379388.1| - 3.1e-60 202.1 0.0 5.6e-60 201.3 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|383318547|ref|YP_005379388.1| - 9.7e-06 25.3 0.0 1.8e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like Dynamin_N PF00350.23 gi|383318548|ref|YP_005379389.1| - 1.2e-25 90.5 0.0 2.4e-25 89.5 0.0 1.5 1 0 0 1 1 1 1 Dynamin family MMR_HSR1 PF01926.23 gi|383318548|ref|YP_005379389.1| - 2.8e-08 33.8 0.0 1.4e-07 31.6 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|383318548|ref|YP_005379389.1| - 2.2e-07 30.6 0.0 4.4e-05 23.1 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain FeoB_N PF02421.18 gi|383318548|ref|YP_005379389.1| - 0.00018 21.1 0.1 0.058 12.9 0.0 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|383318548|ref|YP_005379389.1| - 0.00022 21.2 2.9 2.2 8.2 0.1 3.5 2 1 1 3 3 3 2 RsgA GTPase Septin PF00735.18 gi|383318548|ref|YP_005379389.1| - 0.0012 18.2 0.0 0.004 16.5 0.0 1.9 1 1 0 1 1 1 1 Septin IIGP PF05049.13 gi|383318548|ref|YP_005379389.1| - 0.002 17.2 0.0 0.29 10.2 0.0 2.2 2 0 0 2 2 2 2 Interferon-inducible GTPase (IIGP) DUF1560 PF07597.11 gi|383318548|ref|YP_005379389.1| - 0.13 12.3 0.1 0.3 11.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1560) BAGE PF08180.11 gi|383318548|ref|YP_005379389.1| - 0.86 9.7 5.0 1 9.5 0.2 2.9 3 0 0 3 3 3 0 B melanoma antigen family ZapA PF05164.13 gi|383318549|ref|YP_005379390.1| - 0.024 15.0 1.8 2.2 8.8 0.1 2.7 3 0 0 3 3 3 0 Cell division protein ZapA ImpA_N PF06812.12 gi|383318549|ref|YP_005379390.1| - 0.091 12.9 0.2 0.19 11.8 0.1 1.6 2 0 0 2 2 2 0 ImpA, N-terminal, type VI secretion system Spore_III_AB PF09548.10 gi|383318549|ref|YP_005379390.1| - 0.23 11.6 4.5 2.2 8.3 4.5 2.1 1 1 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) MFS_1 PF07690.16 gi|383318550|ref|YP_005379391.1| - 1.7e-22 79.9 44.9 1.7e-22 79.9 44.9 1.9 1 1 0 1 1 1 1 Major Facilitator Superfamily ATG22 PF11700.8 gi|383318550|ref|YP_005379391.1| - 0.0032 16.2 0.1 0.0032 16.2 0.1 3.0 3 1 0 3 3 3 2 Vacuole effluxer Atg22 like DUF5392 PF17370.2 gi|383318551|ref|YP_005379392.1| - 0.069 13.2 0.1 0.075 13.1 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5392) HEAT_2 PF13646.6 gi|383318552|ref|YP_005379393.1| - 2.5e-06 27.8 0.1 3.4e-06 27.3 0.1 1.2 1 0 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.16 gi|383318552|ref|YP_005379393.1| - 0.048 14.3 3.7 1.5 9.7 0.3 2.6 2 0 0 2 2 2 0 PBS lyase HEAT-like repeat F420_ligase PF01996.16 gi|383318553|ref|YP_005379394.1| - 4.7e-60 203.0 0.0 5.9e-60 202.6 0.0 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase LapA_dom PF06305.11 gi|383318554|ref|YP_005379395.1| - 0.012 15.4 0.2 0.016 15.0 0.2 1.2 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain DUF2304 PF10066.9 gi|383318554|ref|YP_005379395.1| - 0.013 15.7 0.4 0.014 15.6 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) DUF3951 PF13131.6 gi|383318554|ref|YP_005379395.1| - 0.065 13.4 4.0 0.084 13.1 4.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3951) Col_cuticle_N PF01484.17 gi|383318554|ref|YP_005379395.1| - 0.16 12.1 0.9 0.33 11.1 0.5 1.7 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain CbiA PF01656.23 gi|383318555|ref|YP_005379396.1| - 2.4e-20 72.9 0.6 3.3e-20 72.4 0.6 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|383318555|ref|YP_005379396.1| - 3.3e-17 63.0 0.4 5.5e-17 62.2 0.4 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|383318555|ref|YP_005379396.1| - 1.6e-15 57.3 6.2 1.8e-14 53.8 6.2 2.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|383318555|ref|YP_005379396.1| - 9.8e-15 54.7 2.3 9.5e-09 35.1 0.1 2.0 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|383318555|ref|YP_005379396.1| - 3.1e-13 49.8 0.0 1.8e-12 47.3 0.0 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|383318555|ref|YP_005379396.1| - 0.00011 21.6 0.2 0.00048 19.5 0.2 1.9 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|383318555|ref|YP_005379396.1| - 0.0014 17.9 1.5 0.0014 17.9 1.5 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|383318555|ref|YP_005379396.1| - 0.024 14.5 0.5 0.024 14.5 0.5 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|383318555|ref|YP_005379396.1| - 0.033 13.8 1.4 0.057 13.0 1.4 1.7 1 1 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|383318555|ref|YP_005379396.1| - 0.034 13.4 1.0 0.075 12.3 1.0 1.5 1 0 0 1 1 1 0 VirC1 protein AAA_24 PF13479.6 gi|383318555|ref|YP_005379396.1| - 0.071 12.8 0.6 0.11 12.2 0.6 1.3 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|383318555|ref|YP_005379396.1| - 0.092 12.5 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF2226 PF09987.9 gi|383318557|ref|YP_005379398.1| - 4.1e-08 32.9 0.0 0.0016 17.9 0.0 2.5 3 0 0 3 3 3 2 Uncharacterized protein conserved in archaea (DUF2226) Robl_LC7 PF03259.17 gi|383318558|ref|YP_005379399.1| - 3.7e-06 26.6 0.1 7e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 Roadblock/LC7 domain DUF2226 PF09987.9 gi|383318558|ref|YP_005379399.1| - 0.00072 19.0 0.0 0.0011 18.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2226) Robl_LC7 PF03259.17 gi|383318559|ref|YP_005379400.1| - 9.9e-15 54.1 0.7 1.3e-14 53.7 0.7 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|383318559|ref|YP_005379400.1| - 0.00017 21.4 0.1 0.00022 21.0 0.1 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting DUF1192 PF06698.11 gi|383318559|ref|YP_005379400.1| - 0.05 13.7 0.1 0.11 12.5 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) NiFeSe_Hases PF00374.19 gi|383318560|ref|YP_005379401.1| - 1.6e-37 129.6 0.1 5.6e-19 68.4 0.0 3.0 2 1 0 3 3 3 3 Nickel-dependent hydrogenase Oxidored_q6 PF01058.22 gi|383318561|ref|YP_005379402.1| - 5.4e-30 103.9 0.1 1.5e-29 102.5 0.0 1.8 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF2256 PF10013.9 gi|383318561|ref|YP_005379402.1| - 0.13 12.4 0.6 0.33 11.1 0.6 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) Zn_ribbon_recom PF13408.6 gi|383318561|ref|YP_005379402.1| - 0.39 11.3 6.5 0.83 10.2 6.5 1.6 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain ATC_hydrolase PF14196.6 gi|383318562|ref|YP_005379403.1| - 0.002 18.9 0.0 0.0025 18.6 0.0 1.2 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase Ubiquitin_3 PF14836.6 gi|383318562|ref|YP_005379403.1| - 0.07 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Ubiquitin-like domain Fer4 PF00037.27 gi|383318563|ref|YP_005379404.1| - 3.8e-12 45.5 17.5 4.2e-06 26.3 3.2 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|383318563|ref|YP_005379404.1| - 9.2e-11 41.7 22.9 2.3e-08 34.0 11.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383318563|ref|YP_005379404.1| - 3.9e-09 36.9 21.3 6.6e-08 33.0 9.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383318563|ref|YP_005379404.1| - 4.6e-09 36.3 9.4 6.6e-09 35.8 9.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383318563|ref|YP_005379404.1| - 9.8e-09 34.8 15.1 2.4e-05 24.2 3.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383318563|ref|YP_005379404.1| - 5.4e-08 32.6 16.4 3.6e-05 23.6 3.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383318563|ref|YP_005379404.1| - 1.5e-06 28.2 13.8 4.6e-06 26.7 13.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383318563|ref|YP_005379404.1| - 1.7e-05 25.7 9.9 0.0065 17.4 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|383318563|ref|YP_005379404.1| - 3.5e-05 24.0 9.0 0.007 16.8 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|383318563|ref|YP_005379404.1| - 7.5e-05 23.1 12.5 0.0048 17.3 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383318563|ref|YP_005379404.1| - 8.6e-05 23.0 13.3 0.0022 18.5 2.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383318563|ref|YP_005379404.1| - 0.00011 22.7 11.6 0.044 14.3 11.5 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|383318563|ref|YP_005379404.1| - 0.00016 22.3 1.7 0.00016 22.3 1.7 2.3 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|383318563|ref|YP_005379404.1| - 0.0021 18.9 7.9 0.038 14.8 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|383318563|ref|YP_005379404.1| - 0.0066 16.6 11.7 0.097 12.9 2.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|383318563|ref|YP_005379404.1| - 1.7 8.9 6.5 5.2 7.2 6.5 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_3 PF12798.7 gi|383318563|ref|YP_005379404.1| - 2.4 9.3 23.0 2.4 9.3 5.4 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain SprT-like PF10263.9 gi|383318564|ref|YP_005379405.1| - 6.4e-12 45.3 0.0 1.1e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 SprT-like family zf-CSL PF05207.13 gi|383318564|ref|YP_005379405.1| - 0.021 14.6 5.5 0.47 10.2 2.3 2.4 2 0 0 2 2 2 0 CSL zinc finger DUF2688 PF10892.8 gi|383318564|ref|YP_005379405.1| - 0.024 14.1 3.9 0.54 9.8 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) Zn_ribbon_SprT PF17283.2 gi|383318564|ref|YP_005379405.1| - 0.024 14.5 18.5 0.093 12.7 5.3 2.8 3 0 0 3 3 3 0 SprT-like zinc ribbon domain HypA PF01155.19 gi|383318564|ref|YP_005379405.1| - 0.066 13.2 5.7 1.7 8.7 0.3 2.2 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_10 PF10058.9 gi|383318564|ref|YP_005379405.1| - 0.085 12.6 1.3 6.9 6.5 0.1 2.5 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Desulfoferrod_N PF06397.12 gi|383318564|ref|YP_005379405.1| - 0.17 11.5 7.0 0.37 10.4 0.1 2.8 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.10 gi|383318564|ref|YP_005379405.1| - 0.2 11.8 0.3 0.2 11.8 0.3 2.8 2 1 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|383318564|ref|YP_005379405.1| - 0.33 11.0 5.5 10 6.2 5.6 2.5 1 1 0 1 1 1 0 Double zinc ribbon Rubredoxin_2 PF18073.1 gi|383318564|ref|YP_005379405.1| - 0.39 10.5 7.6 5.6 6.8 0.8 2.6 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf_UBZ PF18439.1 gi|383318564|ref|YP_005379405.1| - 0.75 9.4 6.9 7.1 6.3 0.1 2.9 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Ribosomal_L37e PF01907.19 gi|383318564|ref|YP_005379405.1| - 4.1 7.6 15.2 0.31 11.2 1.3 3.0 3 0 0 3 3 3 0 Ribosomal protein L37e CxC4 PF18717.1 gi|383318564|ref|YP_005379405.1| - 7.1 6.5 6.9 18 5.2 5.6 2.2 2 1 1 3 3 3 0 CxC4 like cysteine cluster associated with KDZ transposases DHquinase_I PF01487.15 gi|383318565|ref|YP_005379406.1| - 5.6e-51 174.0 0.0 6.5e-51 173.8 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Pterin_bind PF00809.22 gi|383318566|ref|YP_005379407.1| - 3.3e-09 36.8 1.3 1.2e-07 31.7 0.5 2.5 1 1 1 2 2 2 1 Pterin binding enzyme DUF4346 PF14251.6 gi|383318566|ref|YP_005379407.1| - 2.2e-07 30.9 0.1 1.8e-05 24.7 0.0 2.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) Radical_SAM PF04055.21 gi|383318566|ref|YP_005379407.1| - 0.0065 16.9 0.0 0.17 12.3 0.0 2.3 1 1 0 1 1 1 1 Radical SAM superfamily CdhD PF03599.16 gi|383318566|ref|YP_005379407.1| - 0.022 13.5 0.1 0.097 11.4 0.0 2.0 2 0 0 2 2 2 0 CO dehydrogenase/acetyl-CoA synthase delta subunit PHP_C PF13263.6 gi|383318567|ref|YP_005379408.1| - 1.7e-15 56.5 0.0 3.5e-15 55.5 0.0 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|383318567|ref|YP_005379408.1| - 9.1e-13 48.8 0.0 3e-12 47.2 0.0 2.0 1 1 0 1 1 1 1 PHP domain AP_endonuc_2 PF01261.24 gi|383318567|ref|YP_005379408.1| - 0.0027 17.2 0.0 0.0045 16.4 0.0 1.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel HTH_AsnC-type PF13404.6 gi|383318568|ref|YP_005379409.1| - 3.9e-12 45.8 0.0 6.9e-12 45.0 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|383318568|ref|YP_005379409.1| - 3.8e-10 39.6 0.1 6.8e-10 38.8 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|383318568|ref|YP_005379409.1| - 1.3e-09 37.5 0.1 3.3e-09 36.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|383318568|ref|YP_005379409.1| - 8.4e-05 22.4 0.1 0.00026 20.9 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|383318568|ref|YP_005379409.1| - 0.00088 19.0 0.1 0.0021 17.8 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|383318568|ref|YP_005379409.1| - 0.0021 18.0 0.0 0.0045 16.9 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|383318568|ref|YP_005379409.1| - 0.0027 17.9 0.0 0.0065 16.6 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|383318568|ref|YP_005379409.1| - 0.0056 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|383318568|ref|YP_005379409.1| - 0.0077 16.0 0.1 0.019 14.7 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|383318568|ref|YP_005379409.1| - 0.016 15.2 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|383318568|ref|YP_005379409.1| - 0.023 14.6 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|383318568|ref|YP_005379409.1| - 0.025 14.5 0.0 0.061 13.3 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|383318568|ref|YP_005379409.1| - 0.028 14.2 0.1 0.078 12.8 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_10 PF04967.12 gi|383318568|ref|YP_005379409.1| - 0.032 14.0 0.0 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain TrmB PF01978.19 gi|383318568|ref|YP_005379409.1| - 0.041 13.8 0.1 0.091 12.7 0.0 1.6 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB ACT_4 PF13291.6 gi|383318568|ref|YP_005379409.1| - 0.062 13.9 0.2 20 5.8 0.1 2.4 2 0 0 2 2 2 0 ACT domain RPA_C PF08784.11 gi|383318568|ref|YP_005379409.1| - 0.066 13.9 0.1 0.2 12.3 0.0 1.7 2 0 0 2 2 2 0 Replication protein A C terminal HTH_38 PF13936.6 gi|383318568|ref|YP_005379409.1| - 0.088 12.6 0.1 0.17 11.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain SpoIIID PF12116.8 gi|383318568|ref|YP_005379409.1| - 0.09 12.9 0.0 0.21 11.7 0.0 1.7 1 0 0 1 1 1 0 Stage III sporulation protein D LexA_DNA_bind PF01726.16 gi|383318568|ref|YP_005379409.1| - 0.11 12.3 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain DUF986 PF06173.12 gi|383318569|ref|YP_005379410.1| - 0.11 12.5 2.1 0.16 12.0 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF986) VIT1 PF01988.19 gi|383318569|ref|YP_005379410.1| - 0.31 10.9 9.1 0.36 10.7 9.1 1.2 1 0 0 1 1 1 0 VIT family ATC_hydrolase PF14196.6 gi|383318570|ref|YP_005379411.1| - 0.00032 21.5 0.0 0.00041 21.1 0.0 1.2 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase CPBP PF02517.16 gi|383318571|ref|YP_005379412.1| - 4.5e-10 39.8 9.5 4.5e-10 39.8 9.5 2.7 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease MttA_Hcf106 PF02416.16 gi|383318572|ref|YP_005379413.1| - 1.1e-15 56.6 0.8 2e-15 55.8 0.8 1.7 1 1 0 1 1 1 1 mttA/Hcf106 family HTH_24 PF13412.6 gi|383318575|ref|YP_005379416.1| - 1.2e-18 66.4 0.0 8.4e-10 38.1 0.0 2.8 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|383318575|ref|YP_005379416.1| - 3.6e-12 46.0 0.0 6.7e-05 22.7 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|383318575|ref|YP_005379416.1| - 9.2e-09 35.2 0.0 3.6e-05 23.7 0.2 2.9 2 1 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|383318575|ref|YP_005379416.1| - 1.7e-08 34.2 0.0 7.2e-05 22.6 0.0 2.8 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.10 gi|383318575|ref|YP_005379416.1| - 1.3e-07 31.3 0.0 0.0025 17.6 0.0 2.6 2 0 0 2 2 2 2 IclR helix-turn-helix domain TrmB PF01978.19 gi|383318575|ref|YP_005379416.1| - 1.4e-05 24.9 0.0 0.011 15.5 0.0 2.6 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|383318575|ref|YP_005379416.1| - 0.00036 20.1 0.0 0.27 10.9 0.0 2.6 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|383318575|ref|YP_005379416.1| - 0.00045 20.0 0.0 0.32 10.9 0.0 2.6 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|383318575|ref|YP_005379416.1| - 0.0013 18.6 0.0 0.12 12.3 0.0 2.5 2 0 0 2 2 2 1 MarR family RP-C PF03428.13 gi|383318575|ref|YP_005379416.1| - 0.0013 18.4 0.0 0.0046 16.6 0.0 1.8 2 0 0 2 2 2 1 Replication protein C N-terminal domain HTH_34 PF13601.6 gi|383318575|ref|YP_005379416.1| - 0.0017 18.5 0.0 0.72 10.1 0.0 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain PQQ_3 PF13570.6 gi|383318575|ref|YP_005379416.1| - 0.0061 17.0 28.1 0.058 13.9 0.1 8.4 8 1 1 9 9 9 1 PQQ-like domain GerE PF00196.19 gi|383318575|ref|YP_005379416.1| - 0.011 15.3 0.0 0.56 9.8 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Lipoprotein_15 PF03640.15 gi|383318575|ref|YP_005379416.1| - 0.043 13.4 0.0 0.16 11.5 0.0 2.1 1 0 0 1 1 1 0 Secreted repeat of unknown function TFIIE_alpha PF02002.17 gi|383318575|ref|YP_005379416.1| - 0.057 13.3 0.0 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_Crp_2 PF13545.6 gi|383318575|ref|YP_005379416.1| - 0.12 12.4 0.1 0.42 10.6 0.1 1.9 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_9 PF08221.11 gi|383318575|ref|YP_005379416.1| - 0.13 12.3 0.0 23 5.1 0.0 2.5 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain CarboxypepD_reg PF13620.6 gi|383318576|ref|YP_005379417.1| - 2.8e-13 49.9 0.3 4.8e-13 49.2 0.3 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Peptidase_MA_2 PF13485.6 gi|383318576|ref|YP_005379417.1| - 5.8e-13 49.1 0.0 8.8e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase MA superfamily CarbopepD_reg_2 PF13715.6 gi|383318576|ref|YP_005379417.1| - 5.8e-05 23.0 0.4 0.00013 21.9 0.4 1.6 1 1 0 1 1 1 1 CarboxypepD_reg-like domain Big_1 PF02369.16 gi|383318576|ref|YP_005379417.1| - 0.0017 18.3 0.0 0.0034 17.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) PEGA PF08308.11 gi|383318576|ref|YP_005379417.1| - 0.0069 16.3 0.1 0.017 15.0 0.1 1.6 1 0 0 1 1 1 1 PEGA domain phage_tail_N PF08400.10 gi|383318576|ref|YP_005379417.1| - 0.038 14.0 0.1 0.077 13.0 0.1 1.4 1 0 0 1 1 1 0 Prophage tail fibre N-terminal BSP PF04450.12 gi|383318576|ref|YP_005379417.1| - 0.048 13.5 0.0 0.45 10.3 0.0 2.1 1 1 0 1 1 1 0 Peptidase of plants and bacteria UCR_Fe-S_N PF10399.9 gi|383318576|ref|YP_005379417.1| - 0.11 11.8 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ABC_tran PF00005.27 gi|383318577|ref|YP_005379418.1| - 5.4e-26 91.7 0.0 8.1e-26 91.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383318577|ref|YP_005379418.1| - 2.5e-13 50.5 0.1 1.2e-09 38.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|383318577|ref|YP_005379418.1| - 7.6e-09 36.2 0.0 1.5e-08 35.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) BCA_ABC_TP_C PF12399.8 gi|383318577|ref|YP_005379418.1| - 0.001 18.9 0.0 0.053 13.5 0.0 2.7 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter SRP54 PF00448.22 gi|383318577|ref|YP_005379418.1| - 0.0013 18.4 0.0 0.002 17.8 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|383318577|ref|YP_005379418.1| - 0.02 15.4 0.1 0.041 14.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|383318577|ref|YP_005379418.1| - 0.046 13.5 0.2 0.08 12.7 0.2 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|383318577|ref|YP_005379418.1| - 0.085 12.3 0.0 7.1 6.0 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|383318577|ref|YP_005379418.1| - 0.13 12.7 0.0 1.3 9.5 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane_2 PF12679.7 gi|383318578|ref|YP_005379419.1| - 4.8e-59 200.0 8.6 5.8e-59 199.7 8.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383318578|ref|YP_005379419.1| - 2.1e-07 31.1 17.6 2.1e-07 31.1 17.6 2.6 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383318578|ref|YP_005379419.1| - 0.00013 21.6 16.9 0.00013 21.6 16.9 2.9 3 0 0 3 3 3 1 ABC-2 family transporter protein Tetraspanin PF00335.20 gi|383318578|ref|YP_005379419.1| - 0.00015 21.6 0.4 0.01 15.6 0.0 2.8 3 1 0 3 3 3 1 Tetraspanin family ABC2_membrane PF01061.24 gi|383318578|ref|YP_005379419.1| - 0.00015 21.3 17.2 0.00015 21.3 17.2 2.5 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|383318578|ref|YP_005379419.1| - 0.00042 19.5 22.6 0.00042 19.5 22.6 2.5 1 1 0 1 1 1 1 ABC-2 family transporter protein FDX-ACB PF03147.14 gi|383318578|ref|YP_005379419.1| - 0.16 12.4 0.1 0.39 11.2 0.1 1.6 1 0 0 1 1 1 0 Ferredoxin-fold anticodon binding domain IncD PF17628.2 gi|383318578|ref|YP_005379419.1| - 0.29 10.9 7.9 0.82 9.4 7.9 1.8 1 0 0 1 1 1 0 Inclusion membrane protein D NPCBM_assoc PF10633.9 gi|383318579|ref|YP_005379420.1| - 1.1e-18 67.3 10.7 2.7e-17 62.8 0.1 3.8 5 0 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.8 gi|383318579|ref|YP_005379420.1| - 2.9e-06 27.5 1.7 0.22 11.8 0.0 4.4 3 1 0 4 4 4 2 IG-like fold at C-terminal of FixG, putative oxidoreductase CARDB PF07705.11 gi|383318579|ref|YP_005379420.1| - 0.003 17.8 0.3 0.025 14.8 0.1 2.6 2 0 0 2 2 2 1 CARDB DUF4625 PF15418.6 gi|383318579|ref|YP_005379420.1| - 0.043 14.1 0.0 3.4 7.9 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4625) HTH_24 PF13412.6 gi|383318580|ref|YP_005379421.1| - 3.1e-11 42.6 0.2 4.8e-07 29.2 0.1 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding PQQ PF01011.21 gi|383318580|ref|YP_005379421.1| - 5e-10 38.8 1.7 0.088 12.8 0.0 5.4 5 0 0 5 5 5 3 PQQ enzyme repeat PQQ_2 PF13360.6 gi|383318580|ref|YP_005379421.1| - 7e-09 35.6 0.0 0.01 15.4 0.0 4.6 3 1 1 4 4 4 3 PQQ-like domain MarR_2 PF12802.7 gi|383318580|ref|YP_005379421.1| - 0.00015 21.6 0.0 0.0065 16.3 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|383318580|ref|YP_005379421.1| - 0.00023 20.9 0.0 0.38 10.6 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|383318580|ref|YP_005379421.1| - 0.0016 18.3 0.0 0.0033 17.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain PQQ_3 PF13570.6 gi|383318580|ref|YP_005379421.1| - 0.014 15.8 0.9 0.014 15.8 0.9 8.4 9 1 0 9 9 9 0 PQQ-like domain HTH_5 PF01022.20 gi|383318580|ref|YP_005379421.1| - 0.025 14.5 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|383318580|ref|YP_005379421.1| - 0.061 13.7 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 gi|383318580|ref|YP_005379421.1| - 0.066 13.0 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain RHS PF03527.14 gi|383318580|ref|YP_005379421.1| - 0.066 13.0 1.0 6.3 6.6 0.1 3.3 3 0 0 3 3 3 0 RHS protein HTH_29 PF13551.6 gi|383318580|ref|YP_005379421.1| - 0.076 13.0 0.0 0.24 11.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix Arylsulfotrans PF05935.11 gi|383318580|ref|YP_005379421.1| - 0.23 10.3 0.0 12 4.6 0.0 3.0 4 0 0 4 4 4 0 Arylsulfotransferase (ASST) TGT_C2 PF14810.6 gi|383318581|ref|YP_005379422.1| - 8.2e-29 99.5 0.3 1.3e-28 98.9 0.3 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|383318581|ref|YP_005379422.1| - 2e-17 62.9 0.1 3.5e-17 62.1 0.1 1.4 1 0 0 1 1 1 1 PUA domain Aminotran_4 PF01063.19 gi|383318582|ref|YP_005379423.1| - 3.7e-54 183.9 0.0 4.4e-54 183.7 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV TPR_1 PF00515.28 gi|383318583|ref|YP_005379424.1| - 8.1e-62 202.7 7.5 4.6e-09 35.7 0.8 10.2 10 0 0 10 10 10 8 Tetratricopeptide repeat TPR_2 PF07719.17 gi|383318583|ref|YP_005379424.1| - 4.9e-61 198.0 7.7 2.5e-08 33.4 0.6 10.4 10 1 0 10 10 10 9 Tetratricopeptide repeat TPR_8 PF13181.6 gi|383318583|ref|YP_005379424.1| - 5.1e-48 157.3 7.6 1.6e-06 27.9 0.2 10.2 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_17 PF13431.6 gi|383318583|ref|YP_005379424.1| - 2.7e-45 149.5 2.5 0.00037 20.7 0.0 10.0 9 1 1 10 10 10 8 Tetratricopeptide repeat TPR_11 PF13414.6 gi|383318583|ref|YP_005379424.1| - 3.8e-41 138.5 0.2 2.3e-06 27.2 0.0 9.2 3 2 7 10 10 10 8 TPR repeat TPR_16 PF13432.6 gi|383318583|ref|YP_005379424.1| - 4.3e-35 120.1 0.0 8.8e-06 26.3 0.7 7.3 3 3 4 7 7 7 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|383318583|ref|YP_005379424.1| - 2.4e-33 112.0 9.0 0.00017 22.1 0.0 9.6 2 2 8 10 10 10 7 Tetratricopeptide repeat TPR_9 PF13371.6 gi|383318583|ref|YP_005379424.1| - 2.3e-27 94.9 1.2 1.3e-06 28.4 0.0 6.2 2 1 2 6 6 6 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|383318583|ref|YP_005379424.1| - 9e-27 93.4 0.6 8.3e-06 26.2 0.4 5.6 4 1 2 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.6 gi|383318583|ref|YP_005379424.1| - 1.6e-24 85.9 7.7 0.00013 22.1 0.0 7.6 4 2 1 6 6 6 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383318583|ref|YP_005379424.1| - 6.6e-17 60.2 0.3 0.33 11.1 0.0 8.2 7 1 1 8 8 8 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|383318583|ref|YP_005379424.1| - 5.3e-16 58.1 1.8 0.12 13.1 0.0 9.0 10 0 0 10 10 9 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|383318583|ref|YP_005379424.1| - 7.9e-13 48.5 6.1 0.0005 20.2 0.0 4.2 3 1 1 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|383318583|ref|YP_005379424.1| - 1.1e-12 47.7 0.0 0.0069 15.3 0.0 4.7 2 2 3 5 5 5 3 NMDA receptor-regulated protein 1 TPR_10 PF13374.6 gi|383318583|ref|YP_005379424.1| - 1.7e-09 37.2 1.8 0.053 13.4 0.0 7.0 7 0 0 7 7 7 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|383318583|ref|YP_005379424.1| - 5.4e-08 32.4 0.1 0.0045 16.2 0.1 3.5 1 1 1 3 3 3 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|383318583|ref|YP_005379424.1| - 7.9e-08 32.3 0.0 2.1 8.5 0.0 6.0 6 0 0 6 6 6 2 Fis1 C-terminal tetratricopeptide repeat TOM20_plant PF06552.12 gi|383318583|ref|YP_005379424.1| - 4.2e-06 26.6 3.9 0.47 10.2 0.0 5.0 3 3 0 3 3 3 2 Plant specific mitochondrial import receptor subunit TOM20 PknG_TPR PF16918.5 gi|383318583|ref|YP_005379424.1| - 1.8e-05 23.7 0.5 0.00075 18.3 0.1 2.6 2 1 0 3 3 3 1 Protein kinase G tetratricopeptide repeat HrpB1_HrpK PF09613.10 gi|383318583|ref|YP_005379424.1| - 5.2e-05 22.9 0.8 0.9 9.2 0.0 3.8 3 1 1 4 4 4 1 Bacterial type III secretion protein (HrpB1_HrpK) BTAD PF03704.17 gi|383318583|ref|YP_005379424.1| - 5.6e-05 23.6 2.5 10 6.6 0.2 4.4 4 2 0 5 5 4 0 Bacterial transcriptional activator domain MIT PF04212.18 gi|383318583|ref|YP_005379424.1| - 0.0021 18.1 3.2 14 5.9 0.0 5.9 8 0 0 8 8 7 0 MIT (microtubule interacting and transport) domain PPTA PF01239.22 gi|383318583|ref|YP_005379424.1| - 0.0081 15.9 4.2 7.7 6.4 0.2 5.6 7 0 0 7 7 6 0 Protein prenyltransferase alpha subunit repeat DUF3856 PF12968.7 gi|383318583|ref|YP_005379424.1| - 0.015 15.4 5.7 26 4.8 0.1 4.9 2 1 3 5 5 4 0 Domain of Unknown Function (DUF3856) TPR_20 PF14561.6 gi|383318583|ref|YP_005379424.1| - 0.031 14.6 1.4 6.9 7.1 0.1 4.3 4 1 1 5 5 5 0 Tetratricopeptide repeat ChAPs PF09295.10 gi|383318583|ref|YP_005379424.1| - 0.065 12.2 0.3 5.6 5.9 0.0 3.0 1 1 2 4 4 4 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_4 PF07721.14 gi|383318583|ref|YP_005379424.1| - 0.068 13.8 8.6 2.4 9.1 0.1 4.7 4 0 0 4 4 3 0 Tetratricopeptide repeat HTH_Bact PF18768.1 gi|383318583|ref|YP_005379424.1| - 0.077 12.6 0.0 83 2.9 0.0 4.9 5 1 0 5 5 4 0 Helix-turn-helix bacterial domain MAS20 PF02064.15 gi|383318583|ref|YP_005379424.1| - 0.1 12.7 0.1 1.7e+02 2.3 0.0 4.6 5 1 1 6 6 5 0 MAS20 protein import receptor PPR PF01535.20 gi|383318583|ref|YP_005379424.1| - 0.16 12.3 13.5 66 4.1 0.0 6.8 8 0 0 8 8 6 0 PPR repeat DeoC PF01791.9 gi|383318584|ref|YP_005379425.1| - 3.2e-13 49.8 1.1 4.1e-13 49.5 1.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase His_biosynth PF00977.21 gi|383318584|ref|YP_005379425.1| - 6.6e-05 22.5 0.3 0.00018 21.1 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.14 gi|383318584|ref|YP_005379425.1| - 0.00052 19.3 0.7 0.0007 18.8 0.7 1.2 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|383318584|ref|YP_005379425.1| - 0.016 14.4 0.2 0.023 13.9 0.2 1.4 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|383318584|ref|YP_005379425.1| - 0.02 13.9 0.2 0.024 13.7 0.2 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Dus PF01207.17 gi|383318584|ref|YP_005379425.1| - 0.03 13.4 0.0 0.049 12.7 0.0 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) PcrB PF01884.17 gi|383318584|ref|YP_005379425.1| - 0.049 13.1 0.4 0.079 12.4 0.4 1.4 1 1 0 1 1 1 0 PcrB family G3P_antiterm PF04309.12 gi|383318584|ref|YP_005379425.1| - 0.079 12.4 0.4 0.18 11.2 0.1 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Bac_luciferase PF00296.20 gi|383318585|ref|YP_005379426.1| - 1.3e-54 185.8 0.0 1.6e-54 185.5 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase OrfB_IS605 PF01385.19 gi|383318586|ref|YP_005379427.1| - 1.4e-24 86.6 0.8 2.4e-24 85.9 0.8 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|383318586|ref|YP_005379427.1| - 8.5e-11 41.6 0.1 3.4e-10 39.7 0.1 2.1 1 1 0 1 1 1 1 Putative transposase DNA-binding domain eRF1_2 PF03464.15 gi|383318587|ref|YP_005379428.1| - 3e-40 137.6 0.0 5.2e-40 136.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|383318587|ref|YP_005379428.1| - 6e-34 116.9 0.4 1.4e-33 115.7 0.4 1.6 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|383318587|ref|YP_005379428.1| - 2.1e-14 53.6 0.0 9.6e-14 51.5 0.0 2.1 2 0 0 2 2 2 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|383318587|ref|YP_005379428.1| - 6.8e-12 45.8 0.0 3.6e-11 43.5 0.0 2.1 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|383318587|ref|YP_005379428.1| - 1.7e-08 34.8 0.0 3.1e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 zf-DNL PF05180.12 gi|383318587|ref|YP_005379428.1| - 0.0074 16.2 0.4 0.016 15.1 0.4 1.6 1 0 0 1 1 1 1 DNL zinc finger DUF4379 PF14311.6 gi|383318587|ref|YP_005379428.1| - 0.02 15.3 0.2 0.039 14.3 0.2 1.5 1 0 0 1 1 1 0 Probable Zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|383318587|ref|YP_005379428.1| - 0.022 14.5 1.2 2.7 7.8 0.0 2.5 2 0 0 2 2 2 0 Rubredoxin metal binding domain HypA PF01155.19 gi|383318587|ref|YP_005379428.1| - 0.023 14.7 0.1 0.051 13.6 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-TFIIB PF13453.6 gi|383318587|ref|YP_005379428.1| - 0.034 13.5 0.4 0.39 10.1 0.1 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger Clr5 PF14420.6 gi|383318587|ref|YP_005379428.1| - 0.13 12.5 0.0 0.53 10.6 0.0 2.0 2 0 0 2 2 2 0 Clr5 domain zinc_ribbon_4 PF13717.6 gi|383318587|ref|YP_005379428.1| - 0.22 11.4 0.9 18 5.3 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|383318587|ref|YP_005379428.1| - 0.24 11.4 1.2 23 5.1 0.1 2.8 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger zf-IS66 PF13005.7 gi|383318587|ref|YP_005379428.1| - 0.31 11.5 2.4 19 5.7 0.0 3.6 4 0 0 4 4 3 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.10 gi|383318587|ref|YP_005379428.1| - 0.34 11.1 2.9 1.7 8.9 0.9 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-LITAF-like PF10601.9 gi|383318587|ref|YP_005379428.1| - 0.71 10.2 5.2 1.4 9.2 2.5 2.3 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain tRNA-synt_1d PF00750.19 gi|383318588|ref|YP_005379429.1| - 1.8e-43 148.8 0.0 2.3e-43 148.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|383318588|ref|YP_005379429.1| - 3.8e-33 114.2 0.9 8.6e-33 113.0 0.3 2.0 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|383318588|ref|YP_005379429.1| - 3e-10 40.5 0.0 9.9e-10 38.9 0.0 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|383318588|ref|YP_005379429.1| - 0.00079 18.4 0.0 0.25 10.2 0.0 2.8 2 1 1 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|383318588|ref|YP_005379429.1| - 0.03 13.7 0.0 0.055 12.8 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|383318588|ref|YP_005379429.1| - 0.07 11.9 0.0 11 4.6 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class I (M) DUF4349 PF14257.6 gi|383318589|ref|YP_005379430.1| - 5e-64 215.7 0.9 6.3e-64 215.3 0.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) DUF3568 PF12092.8 gi|383318589|ref|YP_005379430.1| - 0.045 13.8 1.0 0.13 12.4 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3568) FlaC_arch PF05377.11 gi|383318589|ref|YP_005379430.1| - 0.28 11.6 1.4 27 5.3 0.0 2.4 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) PBP_like_2 PF12849.7 gi|383318590|ref|YP_005379431.1| - 3.2e-32 112.3 2.3 4.2e-32 112.0 2.3 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|383318590|ref|YP_005379431.1| - 5.7e-15 55.7 1.0 6.8e-15 55.4 1.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|383318590|ref|YP_005379431.1| - 4.1e-05 23.1 0.0 5.3e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain PBP_like PF12727.7 gi|383318590|ref|YP_005379431.1| - 0.0001 21.5 0.0 0.00014 21.1 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain NMT1_3 PF16868.5 gi|383318590|ref|YP_005379431.1| - 0.00053 19.5 0.2 0.00068 19.1 0.2 1.1 1 0 0 1 1 1 1 NMT1-like family NTP_transf_2 PF01909.23 gi|383318590|ref|YP_005379431.1| - 0.015 15.6 0.1 1 9.7 0.0 2.3 2 1 0 2 2 2 0 Nucleotidyltransferase domain Fer4_NifH PF00142.18 gi|383318591|ref|YP_005379432.1| - 1.8e-131 437.5 0.9 2e-131 437.4 0.9 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|383318591|ref|YP_005379432.1| - 2.9e-14 53.2 0.0 6.4e-14 52.1 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|383318591|ref|YP_005379432.1| - 6.3e-09 36.0 0.4 6.3e-09 36.0 0.4 2.5 3 0 0 3 3 3 1 AAA domain ArsA_ATPase PF02374.15 gi|383318591|ref|YP_005379432.1| - 1.4e-06 27.8 0.3 2.4e-06 27.0 0.3 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|383318591|ref|YP_005379432.1| - 1.7e-06 27.7 0.5 1.4e-05 24.7 0.2 2.0 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MeaB PF03308.16 gi|383318591|ref|YP_005379432.1| - 5.7e-05 22.2 0.1 8.8e-05 21.6 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|383318591|ref|YP_005379432.1| - 0.0024 17.2 0.2 0.0047 16.3 0.2 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_24 PF13479.6 gi|383318591|ref|YP_005379432.1| - 0.015 15.0 0.1 0.024 14.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|383318591|ref|YP_005379432.1| - 0.039 13.5 0.1 0.079 12.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|383318591|ref|YP_005379432.1| - 0.05 13.4 0.6 0.1 12.4 0.6 1.6 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|383318591|ref|YP_005379432.1| - 0.055 13.9 0.2 0.16 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|383318591|ref|YP_005379432.1| - 0.055 13.7 0.1 0.28 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|383318591|ref|YP_005379432.1| - 0.062 12.9 0.3 0.11 12.1 0.3 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|383318591|ref|YP_005379432.1| - 0.12 12.1 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|383318591|ref|YP_005379432.1| - 0.15 12.0 0.9 0.55 10.1 0.2 2.1 2 0 0 2 2 2 0 NTPase P-II PF00543.22 gi|383318592|ref|YP_005379433.1| - 9.5e-29 100.0 1.4 1.1e-28 99.8 1.4 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II P-II PF00543.22 gi|383318593|ref|YP_005379434.1| - 1.9e-23 83.0 0.2 6.6e-23 81.3 0.2 1.7 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.19 gi|383318594|ref|YP_005379435.1| - 2.3e-140 467.8 0.2 2.8e-140 467.6 0.2 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|383318595|ref|YP_005379436.1| - 1.8e-132 441.9 0.0 2e-132 441.7 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|383318596|ref|YP_005379437.1| - 1.1e-121 406.3 0.6 1.3e-121 406.1 0.6 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|383318597|ref|YP_005379438.1| - 2.9e-113 378.6 0.0 3.3e-113 378.4 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase YqgF PF14639.6 gi|383318597|ref|YP_005379438.1| - 0.12 12.2 0.0 0.56 10.0 0.0 1.9 2 0 0 2 2 2 0 Holliday-junction resolvase-like of SPT6 AnfO_nitrog PF09582.10 gi|383318598|ref|YP_005379439.1| - 2.3e-58 196.7 0.0 2.7e-58 196.4 0.0 1.1 1 0 0 1 1 1 1 Iron only nitrogenase protein AnfO (AnfO_nitrog) SBP_bac_11 PF13531.6 gi|383318599|ref|YP_005379440.1| - 1.4e-50 172.2 1.4 1.6e-50 172.0 1.4 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|383318599|ref|YP_005379440.1| - 4e-19 69.7 1.7 7.7e-18 65.5 1.7 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|383318599|ref|YP_005379440.1| - 5.6e-07 29.2 0.2 1.1e-06 28.3 0.2 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|383318599|ref|YP_005379440.1| - 1.5e-06 28.2 0.5 3.3e-05 23.8 0.0 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|383318599|ref|YP_005379440.1| - 3.6e-06 26.2 0.1 5.2e-06 25.7 0.1 1.3 1 0 0 1 1 1 1 PBP superfamily domain PBP_like_2 PF12849.7 gi|383318599|ref|YP_005379440.1| - 0.0011 18.7 1.6 0.003 17.3 1.2 1.8 2 0 0 2 2 2 1 PBP superfamily domain Vsr PF03852.15 gi|383318599|ref|YP_005379440.1| - 0.02 14.7 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 DNA mismatch endonuclease Vsr BPD_transp_1 PF00528.22 gi|383318600|ref|YP_005379441.1| - 8e-19 68.1 13.0 8e-19 68.1 13.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|383318601|ref|YP_005379442.1| - 9.5e-31 107.1 0.0 1.3e-30 106.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|383318601|ref|YP_005379442.1| - 1.2e-07 31.4 0.0 0.0066 15.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|383318601|ref|YP_005379442.1| - 4.8e-06 26.6 0.0 0.034 14.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|383318601|ref|YP_005379442.1| - 3.9e-05 24.3 0.0 5.5e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|383318601|ref|YP_005379442.1| - 0.00033 21.1 0.0 0.0005 20.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|383318601|ref|YP_005379442.1| - 0.0018 18.1 0.0 0.0027 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|383318601|ref|YP_005379442.1| - 0.0027 17.4 0.1 0.0052 16.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|383318601|ref|YP_005379442.1| - 0.013 15.4 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|383318601|ref|YP_005379442.1| - 0.02 15.1 0.2 0.68 10.2 0.2 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|383318601|ref|YP_005379442.1| - 0.036 14.3 0.0 0.093 13.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|383318601|ref|YP_005379442.1| - 0.041 13.6 0.0 0.092 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|383318601|ref|YP_005379442.1| - 0.048 14.1 0.0 0.08 13.4 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DLIC PF05783.11 gi|383318601|ref|YP_005379442.1| - 0.079 11.8 0.1 0.12 11.2 0.1 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_13 PF13166.6 gi|383318601|ref|YP_005379442.1| - 0.085 11.5 0.0 3.8 6.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|383318601|ref|YP_005379442.1| - 0.094 13.1 0.1 0.18 12.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|383318601|ref|YP_005379442.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|383318601|ref|YP_005379442.1| - 0.12 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|383318601|ref|YP_005379442.1| - 0.12 11.6 0.1 0.2 10.9 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.19 gi|383318601|ref|YP_005379442.1| - 0.15 11.7 0.2 0.38 10.3 0.2 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|383318601|ref|YP_005379442.1| - 0.16 11.9 0.1 0.33 10.8 0.1 1.5 2 0 0 2 2 2 0 NACHT domain FeoB_N PF02421.18 gi|383318601|ref|YP_005379442.1| - 0.18 11.3 0.3 0.28 10.7 0.3 1.2 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_8 PF12780.7 gi|383318601|ref|YP_005379442.1| - 0.19 11.0 0.0 0.29 10.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 CbiQ PF02361.16 gi|383318602|ref|YP_005379443.1| - 0.012 15.3 5.4 0.016 14.8 5.3 1.4 1 1 0 1 1 1 0 Cobalt transport protein ABC_cobalt PF09819.9 gi|383318603|ref|YP_005379444.1| - 2e-16 60.2 9.6 2e-16 60.2 9.6 2.4 2 0 0 2 2 2 1 ABC-type cobalt transport system, permease component DUF1011 PF06237.12 gi|383318603|ref|YP_005379444.1| - 0.4 11.0 6.6 7 7.1 0.4 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1011) Sdh_cyt PF01127.22 gi|383318603|ref|YP_005379444.1| - 0.68 10.0 5.3 0.27 11.3 1.3 2.2 1 1 1 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4516 PF14990.6 gi|383318603|ref|YP_005379444.1| - 7.5 6.4 7.2 8.7 6.2 2.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4516) MoeA_N PF03453.17 gi|383318604|ref|YP_005379445.1| - 3.5e-34 117.8 0.6 5.4e-34 117.2 0.6 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|383318604|ref|YP_005379445.1| - 5.4e-26 91.0 0.0 1.4e-25 89.7 0.0 1.7 1 0 0 1 1 1 1 Probable molybdopterin binding domain FmdE PF02663.14 gi|383318605|ref|YP_005379446.1| - 2.7e-40 137.4 0.0 3.4e-40 137.1 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|383318605|ref|YP_005379446.1| - 1.2e-08 34.7 2.5 3.5e-08 33.3 2.5 1.8 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.22 gi|383318605|ref|YP_005379446.1| - 0.0039 17.4 0.6 0.0078 16.4 0.6 1.5 1 0 0 1 1 1 1 LIM domain DZR PF12773.7 gi|383318605|ref|YP_005379446.1| - 0.12 12.4 1.6 0.23 11.5 1.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon TOBE PF03459.17 gi|383318606|ref|YP_005379447.1| - 8.1e-19 67.7 1.2 9.7e-19 67.4 1.2 1.0 1 0 0 1 1 1 1 TOBE domain TOBE_3 PF12857.7 gi|383318606|ref|YP_005379447.1| - 0.0001 22.1 0.0 0.00013 21.8 0.0 1.2 1 0 0 1 1 1 1 TOBE-like domain TOBE_2 PF08402.10 gi|383318606|ref|YP_005379447.1| - 0.066 13.4 0.1 0.076 13.2 0.1 1.1 1 0 0 1 1 1 0 TOBE domain TrmO PF01980.16 gi|383318607|ref|YP_005379448.1| - 4.1e-38 130.2 0.0 5.4e-38 129.9 0.0 1.2 1 0 0 1 1 1 1 tRNA-methyltransferase O DUF488 PF04343.13 gi|383318608|ref|YP_005379449.1| - 7.7e-05 23.3 0.0 0.00013 22.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF488 FmdE PF02663.14 gi|383318609|ref|YP_005379450.1| - 1e-23 83.8 0.0 1.3e-23 83.4 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-ACC PF17848.1 gi|383318609|ref|YP_005379450.1| - 0.00019 21.4 1.8 0.0024 17.9 1.5 2.3 1 1 1 2 2 2 1 Acetyl-coA carboxylase zinc finger domain zf-dskA_traR PF01258.17 gi|383318609|ref|YP_005379450.1| - 0.0013 18.6 5.3 0.0051 16.7 3.0 2.9 3 1 1 4 4 4 1 Prokaryotic dksA/traR C4-type zinc finger OrfB_Zn_ribbon PF07282.11 gi|383318609|ref|YP_005379450.1| - 0.0051 16.7 0.1 0.009 15.9 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|383318609|ref|YP_005379450.1| - 0.034 13.7 2.4 0.075 12.6 2.4 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|383318609|ref|YP_005379450.1| - 0.057 13.5 1.3 0.28 11.3 1.4 1.6 1 1 0 1 1 1 0 Double zinc ribbon PRP21_like_P PF12230.8 gi|383318609|ref|YP_005379450.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 Pre-mRNA splicing factor PRP21 like protein HypA PF01155.19 gi|383318609|ref|YP_005379450.1| - 0.12 12.4 0.1 0.25 11.4 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|383318609|ref|YP_005379450.1| - 0.19 11.5 2.3 0.64 9.8 2.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|383318609|ref|YP_005379450.1| - 0.21 11.5 1.2 0.51 10.3 1.2 1.7 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|383318609|ref|YP_005379450.1| - 0.84 9.7 4.3 7.5 6.6 0.1 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|383318609|ref|YP_005379450.1| - 0.89 9.3 3.6 21 4.9 0.4 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf_Rg PF17915.1 gi|383318609|ref|YP_005379450.1| - 1 8.8 4.5 6.6 6.2 3.1 2.2 2 0 0 2 2 2 0 Reverse gyrase zinc finger zf-ribbon_3 PF13248.6 gi|383318609|ref|YP_005379450.1| - 1.2 8.6 5.2 9.4 5.8 5.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.9 gi|383318609|ref|YP_005379450.1| - 1.6 8.9 4.2 4.5 7.4 4.2 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 TFX_C PF14601.6 gi|383318610|ref|YP_005379451.1| - 5.9e-26 90.3 0.2 9.1e-26 89.7 0.2 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term HTH_38 PF13936.6 gi|383318610|ref|YP_005379451.1| - 8.2e-05 22.3 0.1 0.00016 21.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|383318610|ref|YP_005379451.1| - 0.00028 20.4 0.1 0.00052 19.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|383318610|ref|YP_005379451.1| - 0.00063 19.2 0.2 0.0036 16.8 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_19 PF12844.7 gi|383318610|ref|YP_005379451.1| - 0.001 19.1 0.2 0.0018 18.2 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|383318610|ref|YP_005379451.1| - 0.016 15.0 0.0 0.036 13.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|383318610|ref|YP_005379451.1| - 0.037 13.7 0.0 0.064 12.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_7 PF02796.15 gi|383318610|ref|YP_005379451.1| - 0.051 13.7 0.1 0.093 12.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_28 PF13518.6 gi|383318610|ref|YP_005379451.1| - 0.054 13.6 0.0 0.086 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain KORA PF16509.5 gi|383318610|ref|YP_005379451.1| - 0.079 13.2 0.1 0.16 12.3 0.1 1.5 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor Molybdopterin PF00384.22 gi|383318612|ref|YP_005379453.1| - 4.6e-17 62.1 0.0 9.3e-17 61.1 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|383318612|ref|YP_005379453.1| - 0.00036 20.3 0.0 0.13 12.0 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|383318612|ref|YP_005379453.1| - 0.011 15.6 0.0 0.03 14.1 0.0 1.7 2 0 0 2 2 2 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Molydop_binding PF01568.21 gi|383318613|ref|YP_005379454.1| - 5.1e-12 45.8 0.0 6.5e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FdhD-NarQ PF02634.15 gi|383318614|ref|YP_005379455.1| - 2.7e-64 217.1 0.0 3.2e-64 216.9 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family TrmO PF01980.16 gi|383318615|ref|YP_005379456.1| - 4.3e-27 94.7 0.0 7.4e-27 93.9 0.0 1.3 1 0 0 1 1 1 1 tRNA-methyltransferase O FmdE PF02663.14 gi|383318615|ref|YP_005379456.1| - 8.3e-08 32.3 0.0 1.2e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon TMEM132D_C PF15706.5 gi|383318616|ref|YP_005379457.1| - 1.3 8.8 4.7 15 5.5 0.5 2.4 2 0 0 2 2 2 0 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term TF_Zn_Ribbon PF08271.12 gi|383318617|ref|YP_005379458.1| - 2.5e-05 23.7 0.7 0.086 12.4 0.0 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|383318617|ref|YP_005379458.1| - 3.2e-05 23.9 1.1 5.2e-05 23.3 1.1 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|383318617|ref|YP_005379458.1| - 0.0002 21.4 0.0 0.0002 21.4 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RRN7 PF11781.8 gi|383318617|ref|YP_005379458.1| - 0.00061 19.4 2.3 0.18 11.6 0.0 2.2 2 0 0 2 2 2 2 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 RNA_POL_M_15KD PF02150.16 gi|383318617|ref|YP_005379458.1| - 0.0021 17.9 0.6 0.077 12.9 0.0 2.2 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit TFIIS_C PF01096.18 gi|383318617|ref|YP_005379458.1| - 0.0038 17.0 3.1 0.56 10.1 0.5 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zinc_ribbon_10 PF10058.9 gi|383318617|ref|YP_005379458.1| - 0.0039 16.9 0.7 1.6 8.5 0.0 2.1 1 1 1 2 2 2 2 Predicted integral membrane zinc-ribbon metal-binding protein PhnA_Zn_Ribbon PF08274.12 gi|383318617|ref|YP_005379458.1| - 0.0057 16.6 1.0 0.59 10.1 0.2 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon DZR PF12773.7 gi|383318617|ref|YP_005379458.1| - 0.0079 16.2 0.2 0.0095 15.9 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|383318617|ref|YP_005379458.1| - 0.0094 15.9 0.9 0.52 10.3 0.0 2.1 1 1 1 2 2 2 2 Putative transposase DNA-binding domain Rubredoxin_2 PF18073.1 gi|383318617|ref|YP_005379458.1| - 0.014 15.1 2.6 1.5 8.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Nudix_N_2 PF14803.6 gi|383318617|ref|YP_005379458.1| - 0.038 13.9 2.1 4.2 7.4 0.3 2.1 2 0 0 2 2 2 0 Nudix N-terminal Lar_restr_allev PF14354.6 gi|383318617|ref|YP_005379458.1| - 0.043 14.2 0.3 7.7 7.0 0.1 2.1 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|383318617|ref|YP_005379458.1| - 0.064 12.7 2.7 0.62 9.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|383318617|ref|YP_005379458.1| - 0.082 13.0 7.8 0.54 10.4 0.8 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.6 gi|383318617|ref|YP_005379458.1| - 0.089 12.7 2.5 8.1 6.5 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|383318617|ref|YP_005379458.1| - 0.095 12.4 0.8 8.2 6.2 0.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|383318617|ref|YP_005379458.1| - 0.095 12.3 1.3 7.7 6.2 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger NRDD PF13597.6 gi|383318617|ref|YP_005379458.1| - 0.1 11.3 0.3 0.11 11.2 0.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase A2L_zn_ribbon PF08792.10 gi|383318617|ref|YP_005379458.1| - 0.15 11.8 4.1 5.8 6.8 0.7 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-AN1 PF01428.16 gi|383318617|ref|YP_005379458.1| - 0.17 12.1 2.2 6.9 6.9 0.4 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zf_C2H2_13 PF18508.1 gi|383318617|ref|YP_005379458.1| - 0.2 11.3 0.9 2.3 7.9 0.0 2.1 2 0 0 2 2 2 0 Zinc finger domain Zn_Tnp_IS1595 PF12760.7 gi|383318617|ref|YP_005379458.1| - 0.25 11.4 2.9 0.48 10.4 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF35_N PF12172.8 gi|383318617|ref|YP_005379458.1| - 0.4 10.6 4.7 16 5.5 4.7 2.2 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Chordopox_RPO7 PF05864.12 gi|383318617|ref|YP_005379458.1| - 0.81 10.0 3.0 5.3 7.4 0.1 2.1 1 1 1 2 2 2 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) zf-Mss51 PF13824.6 gi|383318617|ref|YP_005379458.1| - 0.89 9.7 3.0 5.5 7.2 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2 PF00096.26 gi|383318617|ref|YP_005379458.1| - 0.97 10.0 3.6 4.3 8.0 0.5 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type GPI PF06560.11 gi|383318618|ref|YP_005379459.1| - 4.9e-47 159.5 0.1 5.9e-47 159.3 0.1 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|383318618|ref|YP_005379459.1| - 0.01 15.5 0.0 0.02 14.6 0.0 1.5 1 1 0 1 1 1 0 Cupin domain Cupin_1 PF00190.22 gi|383318618|ref|YP_005379459.1| - 0.17 11.5 0.0 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 Cupin DUF362 PF04015.12 gi|383318619|ref|YP_005379460.1| - 8.7e-36 124.1 0.1 1e-35 123.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|383318619|ref|YP_005379460.1| - 1.7e-08 33.9 15.5 8.2e-06 25.4 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383318619|ref|YP_005379460.1| - 4.1e-07 30.0 9.5 9.7e-07 28.8 9.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383318619|ref|YP_005379460.1| - 5.1e-07 29.8 8.9 1.3e-06 28.5 8.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383318619|ref|YP_005379460.1| - 4.3e-06 26.6 13.0 1.5e-05 24.8 0.9 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383318619|ref|YP_005379460.1| - 1.6e-05 25.4 12.7 0.00096 19.7 14.2 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383318619|ref|YP_005379460.1| - 1.9e-05 24.6 14.1 0.00026 21.0 15.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383318619|ref|YP_005379460.1| - 0.00011 23.0 10.1 0.0067 17.3 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|383318619|ref|YP_005379460.1| - 0.00016 21.9 13.0 0.096 13.2 3.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|383318619|ref|YP_005379460.1| - 0.00017 22.1 10.4 0.041 14.4 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Lar_N PF09861.9 gi|383318619|ref|YP_005379460.1| - 0.00027 20.2 0.2 0.00044 19.5 0.2 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain Fer4_2 PF12797.7 gi|383318619|ref|YP_005379460.1| - 0.00037 20.4 13.2 0.0039 17.2 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|383318619|ref|YP_005379460.1| - 0.00052 20.2 5.4 0.0011 19.2 5.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383318619|ref|YP_005379460.1| - 0.0066 16.9 12.1 0.47 10.9 1.6 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|383318619|ref|YP_005379460.1| - 0.023 15.6 8.5 0.099 13.5 3.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383318619|ref|YP_005379460.1| - 1.1 10.0 9.6 82 4.1 9.7 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|383318619|ref|YP_005379460.1| - 1.2 9.7 13.3 1.2 9.7 1.6 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I NTP_transferase PF00483.23 gi|383318620|ref|YP_005379461.1| - 8.3e-27 94.3 0.0 1.2e-26 93.8 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|383318620|ref|YP_005379461.1| - 3.1e-09 36.4 0.6 3.1e-09 36.4 0.6 1.8 2 0 0 2 2 2 1 Cupin domain MannoseP_isomer PF01050.18 gi|383318620|ref|YP_005379461.1| - 1.8e-08 34.4 0.3 3.6e-08 33.4 0.3 1.5 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transf_3 PF12804.7 gi|383318620|ref|YP_005379461.1| - 4.8e-08 33.5 0.0 1e-07 32.5 0.0 1.5 1 1 1 2 2 2 1 MobA-like NTP transferase domain AraC_binding PF02311.19 gi|383318620|ref|YP_005379461.1| - 0.00038 20.4 0.2 0.00076 19.4 0.2 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Ectoine_synth PF06339.12 gi|383318620|ref|YP_005379461.1| - 0.017 15.3 0.3 0.03 14.5 0.3 1.4 1 0 0 1 1 1 0 Ectoine synthase Cupin_7 PF12973.7 gi|383318620|ref|YP_005379461.1| - 0.023 14.6 0.1 0.044 13.7 0.1 1.4 1 0 0 1 1 1 0 ChrR Cupin-like domain Cupin_3 PF05899.12 gi|383318620|ref|YP_005379461.1| - 0.06 13.0 0.2 0.27 11.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF861) NTP_transferase PF00483.23 gi|383318621|ref|YP_005379462.1| - 1.5e-36 126.2 0.0 1.8e-36 126.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|383318621|ref|YP_005379462.1| - 6e-11 43.0 0.0 8.3e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|383318621|ref|YP_005379462.1| - 0.18 11.5 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EamA PF00892.20 gi|383318622|ref|YP_005379463.1| - 3.4e-24 85.6 37.8 3.8e-15 56.2 14.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|383318622|ref|YP_005379463.1| - 0.14 12.2 3.6 1.3 9.1 0.2 2.9 3 1 0 3 3 3 0 Putative transmembrane family 234 Multi_Drug_Res PF00893.19 gi|383318622|ref|YP_005379463.1| - 1.7 9.4 15.9 3 8.6 1.5 3.7 4 1 0 4 4 4 0 Small Multidrug Resistance protein NAD_synthase PF02540.17 gi|383318623|ref|YP_005379464.1| - 8.1e-76 254.3 0.0 9.5e-76 254.1 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|383318623|ref|YP_005379464.1| - 3e-06 26.3 0.0 0.00041 19.2 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|383318623|ref|YP_005379464.1| - 0.00077 19.2 0.1 0.0013 18.5 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|383318623|ref|YP_005379464.1| - 0.007 15.9 0.0 0.059 12.9 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC HTH_31 PF13560.6 gi|383318623|ref|YP_005379464.1| - 0.074 13.4 0.0 0.22 11.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain QRPTase_C PF01729.19 gi|383318623|ref|YP_005379464.1| - 0.08 12.7 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain CTP-dep_RFKase PF01982.16 gi|383318624|ref|YP_005379465.1| - 1.6e-43 147.7 0.0 2.4e-43 147.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR PF01047.22 gi|383318624|ref|YP_005379465.1| - 0.00017 21.4 0.2 0.00029 20.7 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|383318624|ref|YP_005379465.1| - 0.00027 20.9 0.2 0.00044 20.2 0.2 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|383318624|ref|YP_005379465.1| - 0.00071 19.1 0.1 0.0014 18.1 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|383318624|ref|YP_005379465.1| - 0.0015 18.4 0.1 0.0026 17.6 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|383318624|ref|YP_005379465.1| - 0.0056 16.5 0.1 0.01 15.6 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_34 PF13601.6 gi|383318624|ref|YP_005379465.1| - 0.013 15.6 0.4 0.52 10.5 0.8 2.8 2 1 1 3 3 3 0 Winged helix DNA-binding domain MazE_antitoxin PF04014.18 gi|383318624|ref|YP_005379465.1| - 0.014 15.3 0.2 0.07 13.1 0.3 2.2 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin LexA_DNA_bind PF01726.16 gi|383318624|ref|YP_005379465.1| - 0.015 15.1 0.1 0.04 13.7 0.1 1.7 1 0 0 1 1 1 0 LexA DNA binding domain AAA_assoc_C PF09821.9 gi|383318624|ref|YP_005379465.1| - 0.031 14.8 0.1 0.056 14.0 0.1 1.5 1 1 0 1 1 1 0 C-terminal AAA-associated domain HTH_20 PF12840.7 gi|383318624|ref|YP_005379465.1| - 0.083 13.0 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|383318624|ref|YP_005379465.1| - 0.24 11.6 1.1 0.6 10.4 0.2 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DHBP_synthase PF00926.19 gi|383318625|ref|YP_005379466.1| - 1.4e-57 194.3 0.0 1.7e-57 194.1 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Ribosomal_S27 PF01599.19 gi|383318626|ref|YP_005379467.1| - 1.1e-18 67.0 3.4 1.4e-18 66.7 3.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.19 gi|383318626|ref|YP_005379467.1| - 0.0014 18.7 2.1 0.002 18.2 2.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L37e Nudix_N_2 PF14803.6 gi|383318626|ref|YP_005379467.1| - 0.0019 18.1 1.1 0.0087 16.0 1.1 1.9 1 1 0 1 1 1 1 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|383318626|ref|YP_005379467.1| - 0.0087 16.0 0.7 0.012 15.6 0.7 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|383318626|ref|YP_005379467.1| - 0.056 13.0 0.7 8.9 6.0 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF1451 PF07295.11 gi|383318626|ref|YP_005379467.1| - 0.061 13.3 0.4 0.062 13.3 0.4 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF4186 PF13811.6 gi|383318626|ref|YP_005379467.1| - 0.07 13.2 0.1 0.071 13.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4186) OrfB_Zn_ribbon PF07282.11 gi|383318626|ref|YP_005379467.1| - 0.081 12.9 1.4 0.098 12.6 1.4 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_13 PF09855.9 gi|383318626|ref|YP_005379467.1| - 1.8 8.8 5.6 1.6 8.9 1.2 2.3 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.6 gi|383318626|ref|YP_005379467.1| - 3.7 7.1 8.0 58 3.3 8.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S24e PF01282.19 gi|383318627|ref|YP_005379468.1| - 4.9e-24 84.1 1.6 7.1e-24 83.6 1.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e NICE-3 PF07406.11 gi|383318627|ref|YP_005379468.1| - 0.033 14.2 0.6 0.04 13.9 0.6 1.1 1 0 0 1 1 1 0 NICE-3 protein DUF5314 PF17241.2 gi|383318627|ref|YP_005379468.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5314) DUF1192 PF06698.11 gi|383318627|ref|YP_005379468.1| - 3 8.0 8.9 21 5.3 4.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) DUF359 PF04019.12 gi|383318628|ref|YP_005379469.1| - 1.9e-39 134.2 0.2 2.5e-39 133.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.13 gi|383318629|ref|YP_005379470.1| - 8e-12 45.1 0.0 1.2e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|383318629|ref|YP_005379470.1| - 0.00027 20.4 0.7 0.0004 19.9 0.7 1.2 1 0 0 1 1 1 1 RecR protein Laminin_EGF PF00053.24 gi|383318629|ref|YP_005379470.1| - 0.015 15.4 0.8 0.019 15.1 0.8 1.2 1 0 0 1 1 1 0 Laminin EGF domain Zn-ribbon_8 PF09723.10 gi|383318629|ref|YP_005379470.1| - 0.69 10.1 4.7 39 4.5 4.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain STT3 PF02516.14 gi|383318631|ref|YP_005379472.1| - 2.2e-26 92.8 39.6 5e-26 91.7 39.6 1.5 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|383318631|ref|YP_005379472.1| - 5.8e-18 65.0 0.6 1.2e-17 64.0 0.6 1.5 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain PMT_2 PF13231.6 gi|383318631|ref|YP_005379472.1| - 1.2e-07 32.1 5.8 1.2e-07 32.1 5.8 4.2 2 2 2 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Big_6 PF17936.1 gi|383318631|ref|YP_005379472.1| - 0.047 14.0 0.0 0.092 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig domain STT3 PF02516.14 gi|383318632|ref|YP_005379473.1| - 2.2e-25 89.6 28.9 3.5e-25 88.9 28.9 1.2 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|383318632|ref|YP_005379473.1| - 1.5e-14 54.0 1.2 1.5e-14 54.0 1.2 2.9 3 0 0 3 3 3 1 Archaeal glycosylation protein B long peripheral domain PMT_2 PF13231.6 gi|383318632|ref|YP_005379473.1| - 4.9e-05 23.6 12.2 4.9e-05 23.6 12.2 4.3 2 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Big_6 PF17936.1 gi|383318632|ref|YP_005379473.1| - 0.016 15.5 0.2 0.039 14.2 0.2 1.6 1 0 0 1 1 1 0 Bacterial Ig domain BRK PF07533.16 gi|383318632|ref|YP_005379473.1| - 0.1 12.2 0.2 0.27 10.9 0.0 1.7 2 0 0 2 2 2 0 BRK domain PQQ_3 PF13570.6 gi|383318633|ref|YP_005379474.1| - 1e-70 232.6 30.5 8.5e-10 38.8 0.1 8.2 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|383318633|ref|YP_005379474.1| - 1.4e-58 192.2 26.4 8.4e-11 41.3 0.0 8.4 9 0 0 9 9 9 7 PQQ enzyme repeat PQQ_2 PF13360.6 gi|383318633|ref|YP_005379474.1| - 7.3e-54 182.9 1.5 1.1e-21 77.6 0.0 3.9 1 1 2 3 3 3 3 PQQ-like domain WD40_like PF17005.5 gi|383318633|ref|YP_005379474.1| - 3e-07 30.0 0.0 0.0053 16.1 0.0 2.6 1 1 2 3 3 3 3 WD40-like domain DUF5050 PF16472.5 gi|383318633|ref|YP_005379474.1| - 0.00046 19.5 0.2 0.56 9.4 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF5050) NTP_transferase PF00483.23 gi|383318634|ref|YP_005379475.1| - 8.5e-35 120.5 0.0 1e-34 120.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|383318634|ref|YP_005379475.1| - 7.4e-12 45.9 0.0 1e-11 45.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|383318634|ref|YP_005379475.1| - 4.1e-07 30.0 0.0 3.3e-06 27.0 0.0 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|383318634|ref|YP_005379475.1| - 0.021 13.0 1.3 0.035 12.3 1.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Hexapep PF00132.24 gi|383318634|ref|YP_005379475.1| - 0.027 14.2 8.9 1.5 8.6 0.1 4.1 2 1 1 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|383318634|ref|YP_005379475.1| - 0.031 13.2 0.2 0.041 12.8 0.2 1.2 1 0 0 1 1 1 0 L-fucokinase Hexapep_2 PF14602.6 gi|383318634|ref|YP_005379475.1| - 6.9 6.5 8.6 1.6 8.6 0.2 3.6 1 1 2 3 3 3 0 Hexapeptide repeat of succinyl-transferase GDP_Man_Dehyd PF16363.5 gi|383318635|ref|YP_005379476.1| - 1.2e-55 189.2 0.0 1.5e-55 188.9 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|383318635|ref|YP_005379476.1| - 7.9e-52 176.1 0.0 9.4e-52 175.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|383318635|ref|YP_005379476.1| - 2.9e-13 49.6 0.0 4.1e-06 26.1 0.0 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|383318635|ref|YP_005379476.1| - 5.1e-13 48.7 0.0 6.7e-13 48.3 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|383318635|ref|YP_005379476.1| - 5e-09 35.7 0.0 7.9e-05 21.9 0.0 2.3 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|383318635|ref|YP_005379476.1| - 1.8e-06 27.3 0.0 4.9e-06 25.8 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|383318635|ref|YP_005379476.1| - 0.0024 17.4 0.0 0.008 15.7 0.0 1.8 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|383318635|ref|YP_005379476.1| - 0.057 13.3 0.1 0.14 12.0 0.1 1.6 2 0 0 2 2 2 0 KR domain RmlD_sub_bind PF04321.17 gi|383318636|ref|YP_005379477.1| - 2.5e-72 243.4 0.0 2.8e-72 243.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|383318636|ref|YP_005379477.1| - 1.2e-25 90.4 0.3 1.6e-25 90.0 0.3 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|383318636|ref|YP_005379477.1| - 2.5e-15 56.7 0.1 9.1e-15 54.9 0.1 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|383318636|ref|YP_005379477.1| - 7.4e-13 48.3 0.6 2.5e-12 46.5 0.3 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|383318636|ref|YP_005379477.1| - 2.8e-12 46.2 1.2 5.5e-12 45.3 1.2 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|383318636|ref|YP_005379477.1| - 4.7e-09 35.8 1.6 1.1e-08 34.6 0.4 2.1 2 1 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|383318636|ref|YP_005379477.1| - 0.0037 17.2 0.4 0.0059 16.5 0.4 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Semialdhyde_dh PF01118.24 gi|383318636|ref|YP_005379477.1| - 0.025 15.0 0.1 0.054 13.9 0.1 1.7 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Peripla_BP_4 PF13407.6 gi|383318636|ref|YP_005379477.1| - 0.043 13.4 0.1 0.061 12.9 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain NTP_transferase PF00483.23 gi|383318637|ref|YP_005379478.1| - 2e-58 197.9 0.0 2.4e-58 197.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|383318637|ref|YP_005379478.1| - 3.7e-12 45.4 20.4 8.8e-08 31.6 3.5 4.5 4 1 3 7 7 7 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|383318637|ref|YP_005379478.1| - 7.5e-12 45.9 0.0 1.2e-11 45.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|383318637|ref|YP_005379478.1| - 0.00013 21.6 21.5 0.00034 20.3 5.0 5.2 3 2 1 5 5 5 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|383318637|ref|YP_005379478.1| - 0.031 13.2 0.1 0.045 12.7 0.1 1.2 1 0 0 1 1 1 0 L-fucokinase Holin_BlyA PF05102.12 gi|383318637|ref|YP_005379478.1| - 0.11 12.5 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 holin, BlyA family GDP_Man_Dehyd PF16363.5 gi|383318638|ref|YP_005379479.1| - 3.7e-80 269.8 0.0 4.2e-80 269.6 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|383318638|ref|YP_005379479.1| - 2e-64 217.3 0.0 2.4e-64 217.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|383318638|ref|YP_005379479.1| - 1.4e-17 63.6 0.0 1.9e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|383318638|ref|YP_005379479.1| - 2.1e-16 59.9 0.0 8.1e-16 58.0 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|383318638|ref|YP_005379479.1| - 2.1e-16 59.9 0.0 2.6e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|383318638|ref|YP_005379479.1| - 4.2e-14 52.3 0.0 1.3e-12 47.5 0.0 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|383318638|ref|YP_005379479.1| - 7e-06 26.0 0.0 1.1e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|383318638|ref|YP_005379479.1| - 3.7e-05 23.3 0.0 7.3e-05 22.3 0.0 1.5 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|383318638|ref|YP_005379479.1| - 0.0047 16.9 0.0 0.009 15.9 0.0 1.6 1 1 0 1 1 1 1 KR domain Cas_Csa5 PF09702.10 gi|383318638|ref|YP_005379479.1| - 0.044 14.0 0.0 0.14 12.4 0.0 1.8 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Csa5) dTDP_sugar_isom PF00908.17 gi|383318639|ref|YP_005379480.1| - 1e-14 54.6 0.0 1.2e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.11 gi|383318639|ref|YP_005379480.1| - 4e-06 26.6 0.0 5.3e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.11 gi|383318639|ref|YP_005379480.1| - 0.093 12.5 0.0 9.7 6.0 0.0 2.2 2 0 0 2 2 2 0 Cupin domain Glycos_transf_2 PF00535.26 gi|383318640|ref|YP_005379481.1| - 3.2e-35 121.4 0.0 4.9e-35 120.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|383318640|ref|YP_005379481.1| - 3.7e-09 36.8 0.0 4.8e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|383318640|ref|YP_005379481.1| - 5e-07 29.5 0.0 7.3e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|383318640|ref|YP_005379481.1| - 0.00049 20.6 0.0 0.00092 19.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 EamA PF00892.20 gi|383318641|ref|YP_005379482.1| - 1.6e-06 28.4 8.3 2.1e-06 28.0 8.3 1.3 1 1 0 1 1 1 1 EamA-like transporter family Multi_Drug_Res PF00893.19 gi|383318641|ref|YP_005379482.1| - 1.1e-05 26.1 2.5 1.6e-05 25.5 2.5 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein TMEM234 PF10639.9 gi|383318641|ref|YP_005379482.1| - 0.00041 20.4 0.7 0.00045 20.2 0.7 1.2 1 0 0 1 1 1 1 Putative transmembrane family 234 DUF1158 PF06643.11 gi|383318641|ref|YP_005379482.1| - 0.064 13.8 0.3 0.064 13.8 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1158) PMT_2 PF13231.6 gi|383318642|ref|YP_005379483.1| - 1.2e-09 38.5 10.9 1.2e-09 38.5 10.9 3.7 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.17 gi|383318642|ref|YP_005379483.1| - 0.0022 17.3 15.4 0.0022 17.3 15.4 2.1 2 1 0 2 2 2 1 Alg9-like mannosyltransferase family DUF4431 PF14485.6 gi|383318642|ref|YP_005379483.1| - 0.15 11.9 0.0 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4431) PD40 PF07676.12 gi|383318643|ref|YP_005379484.1| - 0.13 12.3 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 WD40-like Beta Propeller Repeat TPPK_C PF12555.8 gi|383318643|ref|YP_005379484.1| - 1.3 9.1 5.1 1 9.4 0.2 3.4 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal Cyt_bd_oxida_II PF02322.15 gi|383318643|ref|YP_005379484.1| - 9.8 5.4 40.0 0.01 15.3 13.3 2.9 2 1 1 3 3 3 0 Cytochrome bd terminal oxidase subunit II PMT_2 PF13231.6 gi|383318645|ref|YP_005379486.1| - 3.3e-06 27.4 8.7 3.3e-06 27.4 8.7 3.6 2 1 2 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Polysacc_synt PF01943.17 gi|383318646|ref|YP_005379487.1| - 4.9e-29 101.6 57.0 8.1e-29 100.8 32.9 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|383318646|ref|YP_005379487.1| - 1.1e-18 67.7 22.6 1.1e-18 67.7 22.6 4.1 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|383318646|ref|YP_005379487.1| - 1.8e-18 66.8 21.0 1.8e-18 66.8 21.0 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|383318646|ref|YP_005379487.1| - 1.5e-14 53.5 43.1 1.5e-14 53.5 43.1 1.5 1 1 0 1 1 1 1 Lipid II flippase MurJ MatE PF01554.18 gi|383318646|ref|YP_005379487.1| - 2.1e-10 40.5 12.8 2.1e-10 40.5 12.8 3.9 3 2 0 3 3 3 2 MatE Glyco_tranf_2_3 PF13641.6 gi|383318647|ref|YP_005379488.1| - 2e-25 90.0 0.0 2.7e-25 89.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|383318647|ref|YP_005379488.1| - 1.2e-21 77.2 0.1 1.7e-21 76.8 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|383318647|ref|YP_005379488.1| - 7e-13 48.9 0.1 1.2e-12 48.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|383318647|ref|YP_005379488.1| - 3.1e-09 36.5 0.0 4.5e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|383318647|ref|YP_005379488.1| - 6.4e-05 22.6 0.0 0.00017 21.2 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 ECD PF18432.1 gi|383318647|ref|YP_005379488.1| - 0.0012 18.8 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 Extracellular Cadherin domain Glyco_tranf_2_5 PF13712.6 gi|383318647|ref|YP_005379488.1| - 0.0018 18.0 0.0 0.0037 17.0 0.0 1.6 2 1 0 2 2 2 1 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.6 gi|383318647|ref|YP_005379488.1| - 0.031 14.8 0.1 0.079 13.5 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family 2 Glyco_transf_7C PF02709.14 gi|383318647|ref|YP_005379488.1| - 0.039 13.6 0.0 0.071 12.8 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Glycos_transf_1 PF00534.20 gi|383318648|ref|YP_005379489.1| - 3.6e-37 127.5 0.0 6.4e-37 126.7 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383318648|ref|YP_005379489.1| - 1.1e-29 103.6 0.1 2.7e-29 102.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383318648|ref|YP_005379489.1| - 2.2e-28 99.4 0.1 4.6e-28 98.3 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|383318648|ref|YP_005379489.1| - 3.4e-20 73.1 0.1 7.3e-20 72.0 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|383318648|ref|YP_005379489.1| - 5.7e-14 52.3 0.0 1.3e-13 51.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|383318648|ref|YP_005379489.1| - 8.7e-07 29.0 0.0 1.7e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|383318648|ref|YP_005379489.1| - 0.00015 21.5 0.2 0.15 11.7 0.0 2.3 1 1 1 2 2 2 2 Starch synthase catalytic domain DUF1611 PF07755.11 gi|383318648|ref|YP_005379489.1| - 0.035 13.4 0.0 0.065 12.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain Asn_synthase PF00733.21 gi|383318649|ref|YP_005379490.1| - 4.1e-93 312.9 0.2 5.1e-93 312.6 0.2 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|383318649|ref|YP_005379490.1| - 1.8e-44 150.6 0.0 2.9e-44 149.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|383318649|ref|YP_005379490.1| - 2.9e-39 134.3 0.0 8.1e-39 132.9 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain QueC PF06508.13 gi|383318649|ref|YP_005379490.1| - 1.2e-05 24.9 0.0 1.9e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 gi|383318649|ref|YP_005379490.1| - 8.1e-05 22.1 0.0 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 Arginosuccinate synthase NAD_synthase PF02540.17 gi|383318649|ref|YP_005379490.1| - 0.008 15.3 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.20 gi|383318649|ref|YP_005379490.1| - 0.082 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 PP-loop family Glycos_transf_1 PF00534.20 gi|383318650|ref|YP_005379491.1| - 1.2e-29 103.0 0.0 2e-29 102.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383318650|ref|YP_005379491.1| - 1.7e-26 93.3 0.2 2.5e-26 92.7 0.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|383318650|ref|YP_005379491.1| - 1.9e-26 93.1 0.1 3.9e-26 92.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|383318650|ref|YP_005379491.1| - 1.4e-18 67.8 0.2 2.2e-18 67.2 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|383318650|ref|YP_005379491.1| - 0.00021 21.1 0.1 0.087 12.5 0.0 2.5 1 1 0 2 2 2 2 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|383318650|ref|YP_005379491.1| - 0.0012 19.2 0.0 0.0026 18.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|383318650|ref|YP_005379491.1| - 0.039 14.0 0.0 0.076 13.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like TetR_C_17 PF17922.1 gi|383318650|ref|YP_005379491.1| - 0.21 11.7 0.0 0.61 10.2 0.0 1.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Epimerase_2 PF02350.19 gi|383318650|ref|YP_005379491.1| - 0.23 10.3 0.0 0.72 8.6 0.0 1.7 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_1 PF00534.20 gi|383318651|ref|YP_005379492.1| - 4.4e-28 98.0 0.0 7.1e-28 97.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383318651|ref|YP_005379492.1| - 1.6e-25 90.1 0.0 2.7e-25 89.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|383318651|ref|YP_005379492.1| - 7e-11 42.4 0.0 1.3e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383318651|ref|YP_005379492.1| - 1.9e-05 24.7 0.6 9.5e-05 22.5 0.6 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|383318651|ref|YP_005379492.1| - 0.0002 21.9 0.1 0.00052 20.5 0.1 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|383318651|ref|YP_005379492.1| - 0.0004 20.4 0.1 0.0018 18.3 0.1 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like DUF2786 PF10979.8 gi|383318651|ref|YP_005379492.1| - 0.063 13.2 0.2 0.12 12.3 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2786) THF_DHG_CYH_C PF02882.19 gi|383318651|ref|YP_005379492.1| - 0.11 11.8 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Glyco_transf_4 PF13439.6 gi|383318652|ref|YP_005379493.1| - 2.4e-35 122.0 0.4 4.6e-35 121.1 0.2 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|383318652|ref|YP_005379493.1| - 1.8e-27 95.9 0.0 2.8e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|383318652|ref|YP_005379493.1| - 7.1e-25 88.3 0.0 2.5e-24 86.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|383318652|ref|YP_005379493.1| - 4.1e-21 75.8 0.0 9.1e-21 74.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|383318652|ref|YP_005379493.1| - 1.1e-05 25.5 0.0 1.8e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|383318652|ref|YP_005379493.1| - 1.6e-05 24.7 0.3 0.084 12.6 0.0 2.3 1 1 1 2 2 2 2 Starch synthase catalytic domain MeaB PF03308.16 gi|383318652|ref|YP_005379493.1| - 0.17 10.8 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Glycos_transf_1 PF00534.20 gi|383318653|ref|YP_005379494.1| - 2.3e-20 72.8 0.0 4e-20 72.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383318653|ref|YP_005379494.1| - 4.1e-17 62.9 0.0 6.9e-17 62.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383318653|ref|YP_005379494.1| - 2.9e-16 59.9 0.1 5.7e-16 59.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|383318653|ref|YP_005379494.1| - 8.8e-14 52.3 0.0 2.4e-13 50.8 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|383318653|ref|YP_005379494.1| - 4.5e-05 23.5 0.3 8.6e-05 22.6 0.3 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like STT3 PF02516.14 gi|383318654|ref|YP_005379495.1| - 3.6e-27 95.4 31.5 8.6e-27 94.2 31.5 1.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|383318654|ref|YP_005379495.1| - 1.3e-25 89.5 4.8 2.8e-25 88.4 2.5 2.4 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain PMT_2 PF13231.6 gi|383318654|ref|YP_005379495.1| - 0.00015 22.1 14.7 0.00015 22.1 14.7 5.3 5 1 0 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_2 PF00535.26 gi|383318655|ref|YP_005379496.1| - 3.2e-19 69.4 0.1 4.4e-19 68.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|383318655|ref|YP_005379496.1| - 4.7e-10 39.7 0.0 6.5e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|383318655|ref|YP_005379496.1| - 0.02 15.4 0.0 0.033 14.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Rubrerythrin PF02915.17 gi|383318656|ref|YP_005379497.1| - 2.8e-07 31.0 1.7 3.5e-07 30.7 1.7 1.2 1 0 0 1 1 1 1 Rubrerythrin Mn_catalase PF05067.12 gi|383318656|ref|YP_005379497.1| - 0.00078 18.5 0.2 0.00089 18.3 0.2 1.0 1 0 0 1 1 1 1 Manganese containing catalase COQ7 PF03232.13 gi|383318656|ref|YP_005379497.1| - 0.0017 18.2 0.1 0.0022 17.8 0.1 1.2 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Ferritin PF00210.24 gi|383318656|ref|YP_005379497.1| - 0.034 14.1 0.9 0.045 13.7 0.6 1.4 1 1 0 1 1 1 0 Ferritin-like domain SesA PF17107.5 gi|383318656|ref|YP_005379497.1| - 0.048 13.9 0.1 0.067 13.4 0.1 1.2 1 0 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Imm71 PF15602.6 gi|383318656|ref|YP_005379497.1| - 0.075 13.1 0.3 0.088 12.9 0.3 1.2 1 0 0 1 1 1 0 Immunity protein 71 CarboxypepD_reg PF13620.6 gi|383318657|ref|YP_005379498.1| - 8e-10 38.9 0.1 8e-10 38.9 0.1 2.6 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|383318657|ref|YP_005379498.1| - 3.5e-06 26.9 0.3 1.3e-05 25.1 0.0 2.1 2 0 0 2 2 2 1 CarboxypepD_reg-like domain E1-E2_ATPase PF00122.20 gi|383318658|ref|YP_005379499.1| - 1.8e-47 161.2 0.7 4.2e-47 160.0 0.1 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|383318658|ref|YP_005379499.1| - 6.1e-32 110.8 4.4 6.1e-32 110.8 4.4 1.8 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|383318658|ref|YP_005379499.1| - 1.8e-25 90.5 0.0 6.7e-25 88.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|383318658|ref|YP_005379499.1| - 1.1e-09 37.8 0.0 2.2e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|383318658|ref|YP_005379499.1| - 1.3e-05 25.1 0.9 0.00098 18.9 0.3 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|383318658|ref|YP_005379499.1| - 9.3e-05 22.4 0.0 0.00023 21.2 0.0 1.6 1 0 0 1 1 1 1 Cation transport ATPase (P-type) HAD PF12710.7 gi|383318658|ref|YP_005379499.1| - 0.0027 18.1 0.0 0.0057 17.1 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase MadM PF03818.13 gi|383318658|ref|YP_005379499.1| - 0.077 12.9 2.4 0.24 11.3 0.8 2.5 2 0 0 2 2 2 0 Malonate/sodium symporter MadM subunit PhoR PF11808.8 gi|383318658|ref|YP_005379499.1| - 0.59 10.6 0.0 0.59 10.6 0.0 3.7 3 0 0 3 3 3 0 Phosphate regulon sensor protein PhoR HMGL-like PF00682.19 gi|383318659|ref|YP_005379500.1| - 1.1e-76 258.0 1.4 4.2e-76 256.0 0.1 2.0 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|383318659|ref|YP_005379500.1| - 1.4e-35 122.1 0.4 2.7e-35 121.2 0.4 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain TPP_enzyme_N PF02776.18 gi|383318660|ref|YP_005379501.1| - 1.5e-56 190.7 0.1 4.3e-56 189.2 0.1 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|383318660|ref|YP_005379501.1| - 2.3e-56 189.3 0.1 4.3e-56 188.4 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|383318660|ref|YP_005379501.1| - 3.3e-54 182.8 0.1 4.2e-53 179.3 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|383318660|ref|YP_005379501.1| - 0.023 14.5 0.6 0.093 12.5 0.6 1.9 2 0 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Dala_Dala_lig_C PF07478.13 gi|383318660|ref|YP_005379501.1| - 0.07 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus ALS_ss_C PF10369.9 gi|383318661|ref|YP_005379502.1| - 2e-33 114.4 4.1 4.6e-32 110.0 0.9 2.2 2 0 0 2 2 2 2 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|383318661|ref|YP_005379502.1| - 6.9e-17 61.0 0.4 1.9e-16 59.6 0.1 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|383318661|ref|YP_005379502.1| - 1.6e-16 59.8 0.1 3.9e-16 58.5 0.1 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|383318661|ref|YP_005379502.1| - 0.00038 21.0 0.7 0.00038 21.0 0.7 2.2 2 1 0 2 2 2 1 ACT domain NIL PF09383.10 gi|383318661|ref|YP_005379502.1| - 0.031 14.1 0.1 12 5.8 0.0 2.6 2 1 1 3 3 3 0 NIL domain BPD_transp_1 PF00528.22 gi|383318663|ref|YP_005379504.1| - 3.8e-13 49.6 20.3 5.3e-13 49.1 20.3 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF543 PF04418.12 gi|383318663|ref|YP_005379504.1| - 0.086 12.8 0.4 0.086 12.8 0.4 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF543) ABC_tran PF00005.27 gi|383318664|ref|YP_005379505.1| - 5.2e-33 114.5 0.0 8.2e-33 113.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383318664|ref|YP_005379505.1| - 8.6e-13 48.8 0.1 3e-05 24.0 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383318664|ref|YP_005379505.1| - 1.2e-06 28.2 0.0 0.0025 17.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|383318664|ref|YP_005379505.1| - 1.9e-05 24.4 0.2 0.063 13.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|383318664|ref|YP_005379505.1| - 0.00013 21.6 0.2 0.39 10.3 0.0 2.4 2 1 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|383318664|ref|YP_005379505.1| - 0.00045 20.0 0.0 0.016 14.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.6 gi|383318664|ref|YP_005379505.1| - 0.00071 18.4 0.0 0.32 9.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|383318664|ref|YP_005379505.1| - 0.0017 18.9 0.1 0.0035 17.9 0.0 1.4 2 0 0 2 2 1 1 AAA domain cobW PF02492.19 gi|383318664|ref|YP_005379505.1| - 0.0045 16.6 0.0 0.0092 15.6 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|383318664|ref|YP_005379505.1| - 0.0052 17.1 0.2 0.029 14.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|383318664|ref|YP_005379505.1| - 0.0076 16.0 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|383318664|ref|YP_005379505.1| - 0.0091 15.7 0.1 2.2 8.0 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|383318664|ref|YP_005379505.1| - 0.02 15.3 0.2 0.035 14.5 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|383318664|ref|YP_005379505.1| - 0.046 13.9 1.3 0.46 10.6 1.3 2.1 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|383318664|ref|YP_005379505.1| - 0.048 13.9 0.0 0.48 10.7 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TsaE PF02367.17 gi|383318664|ref|YP_005379505.1| - 0.057 13.4 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad17 PF03215.15 gi|383318664|ref|YP_005379505.1| - 0.058 13.3 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|383318664|ref|YP_005379505.1| - 0.073 13.5 0.3 0.42 11.1 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF3584 PF12128.8 gi|383318664|ref|YP_005379505.1| - 0.086 10.3 0.1 0.12 9.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RsgA_GTPase PF03193.16 gi|383318664|ref|YP_005379505.1| - 0.095 12.6 0.2 0.27 11.1 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase NACHT PF05729.12 gi|383318664|ref|YP_005379505.1| - 0.12 12.2 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|383318664|ref|YP_005379505.1| - 0.13 12.2 0.2 0.54 10.2 0.0 1.9 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.6 gi|383318664|ref|YP_005379505.1| - 0.14 12.7 0.6 0.49 10.9 0.6 2.0 1 1 0 1 1 1 0 AAA domain Peptidase_M10 PF00413.24 gi|383318665|ref|YP_005379506.1| - 3.1e-06 27.1 0.0 3.4e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M54 PF07998.11 gi|383318665|ref|YP_005379506.1| - 5.5e-06 26.5 0.0 8.5e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 DUF2268 PF10026.9 gi|383318665|ref|YP_005379506.1| - 0.00053 19.6 0.0 0.0008 19.0 0.0 1.2 1 0 0 1 1 1 1 Predicted Zn-dependent protease (DUF2268) Reprolysin_3 PF13582.6 gi|383318665|ref|YP_005379506.1| - 0.024 15.1 0.0 0.038 14.5 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M43 PF05572.13 gi|383318665|ref|YP_005379506.1| - 0.027 14.4 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_5 PF13688.6 gi|383318665|ref|YP_005379506.1| - 0.036 14.2 0.0 0.054 13.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_4 PF13583.6 gi|383318665|ref|YP_005379506.1| - 0.037 13.7 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|383318665|ref|YP_005379506.1| - 0.082 11.5 0.8 0.11 11.0 0.8 1.1 1 0 0 1 1 1 0 Putative peptidase family E1-E2_ATPase PF00122.20 gi|383318666|ref|YP_005379507.1| - 1.1e-49 168.4 0.2 1.1e-49 168.4 0.2 2.4 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|383318666|ref|YP_005379507.1| - 2.1e-27 96.0 5.7 2.1e-27 96.0 5.7 2.0 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|383318666|ref|YP_005379507.1| - 2.9e-27 96.3 1.2 5.5e-27 95.4 1.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|383318666|ref|YP_005379507.1| - 2e-12 46.6 1.2 4.5e-11 42.3 0.0 2.6 1 1 1 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|383318666|ref|YP_005379507.1| - 5.9e-06 26.2 0.4 0.0024 17.7 0.4 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|383318666|ref|YP_005379507.1| - 0.0003 20.8 0.0 0.00066 19.7 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) HAD PF12710.7 gi|383318666|ref|YP_005379507.1| - 0.0004 20.9 0.1 0.00086 19.8 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydant_A_N PF05378.13 gi|383318666|ref|YP_005379507.1| - 0.038 13.7 0.1 0.16 11.7 0.1 2.0 1 1 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region DUF4539 PF15072.6 gi|383318666|ref|YP_005379507.1| - 0.15 12.1 0.0 0.46 10.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4539) HMGL-like PF00682.19 gi|383318667|ref|YP_005379508.1| - 1.7e-82 276.9 5.3 1.7e-82 276.9 5.3 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|383318667|ref|YP_005379508.1| - 1e-32 112.9 1.5 2.1e-32 111.8 1.5 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain NYN PF01936.18 gi|383318668|ref|YP_005379509.1| - 3.4e-23 82.8 0.2 4.4e-23 82.4 0.2 1.1 1 0 0 1 1 1 1 NYN domain DUF4479 PF14794.6 gi|383318668|ref|YP_005379509.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) DHH PF01368.20 gi|383318669|ref|YP_005379510.1| - 2.3e-14 53.4 0.0 3.6e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|383318669|ref|YP_005379510.1| - 4.8e-10 40.0 1.2 8.5e-10 39.2 1.2 1.4 1 0 0 1 1 1 1 DHHA1 domain His_biosynth PF00977.21 gi|383318670|ref|YP_005379511.1| - 9.4e-30 103.8 0.3 1.1e-29 103.5 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PRAI PF00697.22 gi|383318670|ref|YP_005379511.1| - 0.00029 20.7 0.0 0.00047 20.0 0.0 1.4 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ThiG PF05690.14 gi|383318670|ref|YP_005379511.1| - 0.0073 15.6 4.0 1 8.6 1.2 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG BtpA PF03437.15 gi|383318670|ref|YP_005379511.1| - 0.039 13.4 1.8 0.41 10.1 0.6 2.0 1 1 0 2 2 2 0 BtpA family Trp_syntA PF00290.20 gi|383318670|ref|YP_005379511.1| - 0.064 12.1 1.1 4.5 6.0 0.0 2.1 2 0 0 2 2 2 0 Tryptophan synthase alpha chain PcrB PF01884.17 gi|383318670|ref|YP_005379511.1| - 0.096 12.1 1.1 3.5 7.0 0.1 2.1 2 0 0 2 2 2 0 PcrB family DsbD PF02683.15 gi|383318671|ref|YP_005379512.1| - 3.4e-15 56.5 15.8 5.4e-15 55.9 15.8 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.6 gi|383318671|ref|YP_005379512.1| - 0.00082 19.4 0.0 0.0015 18.5 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain DUF624 PF04854.14 gi|383318671|ref|YP_005379512.1| - 0.0033 17.5 2.9 0.0056 16.8 0.7 2.6 2 1 1 3 3 3 1 Protein of unknown function, DUF624 Thioredoxin PF00085.20 gi|383318671|ref|YP_005379512.1| - 0.063 13.3 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin OST3_OST6 PF04756.13 gi|383318671|ref|YP_005379512.1| - 0.077 12.3 0.4 1.4 8.2 0.5 2.3 1 1 0 2 2 2 0 OST3 / OST6 family, transporter family MarC PF01914.17 gi|383318671|ref|YP_005379512.1| - 0.12 11.8 12.2 0.052 12.9 0.8 2.5 2 0 0 2 2 2 0 MarC family integral membrane protein HTH_5 PF01022.20 gi|383318673|ref|YP_005379514.1| - 4.3e-19 68.1 0.2 3.4e-13 49.2 0.0 3.2 3 1 0 3 3 3 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|383318673|ref|YP_005379514.1| - 1.6e-14 53.7 0.0 7.1e-09 35.6 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.19 gi|383318673|ref|YP_005379514.1| - 9.8e-11 41.4 0.4 0.00046 20.0 0.1 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|383318673|ref|YP_005379514.1| - 4e-08 33.0 0.0 0.00091 19.1 0.0 2.4 2 0 0 2 2 2 2 MarR family Sigma70_r4_2 PF08281.12 gi|383318673|ref|YP_005379514.1| - 4e-07 29.6 1.6 0.73 9.6 0.0 4.4 3 1 1 4 4 4 2 Sigma-70, region 4 MarR PF01047.22 gi|383318673|ref|YP_005379514.1| - 6.6e-07 29.2 0.0 0.00021 21.2 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|383318673|ref|YP_005379514.1| - 9.2e-07 28.3 3.6 0.0022 17.5 0.3 3.5 2 2 0 2 2 2 2 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|383318673|ref|YP_005379514.1| - 1.4e-06 28.5 0.2 0.22 11.9 0.0 3.1 3 0 0 3 3 3 2 Transcriptional regulator HTH_11 PF08279.12 gi|383318673|ref|YP_005379514.1| - 2.2e-05 24.3 0.0 0.012 15.6 0.0 2.7 2 0 0 2 2 2 1 HTH domain DprA_WH PF17782.1 gi|383318673|ref|YP_005379514.1| - 4.7e-05 23.4 0.0 0.0036 17.4 0.0 2.4 2 0 0 2 2 2 1 DprA winged helix domain LexA_DNA_bind PF01726.16 gi|383318673|ref|YP_005379514.1| - 0.00013 21.6 0.0 0.17 11.7 0.0 2.5 2 0 0 2 2 2 2 LexA DNA binding domain RP-C PF03428.13 gi|383318673|ref|YP_005379514.1| - 0.00015 21.5 0.1 0.02 14.6 0.1 2.4 1 1 0 2 2 2 1 Replication protein C N-terminal domain Sulfolobus_pRN PF05584.11 gi|383318673|ref|YP_005379514.1| - 0.00023 21.2 0.1 0.012 15.7 0.0 2.3 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein PadR PF03551.14 gi|383318673|ref|YP_005379514.1| - 0.00063 19.7 0.2 0.013 15.4 0.1 3.0 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.19 gi|383318673|ref|YP_005379514.1| - 0.0007 19.7 0.0 0.048 13.9 0.0 2.5 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.16 gi|383318673|ref|YP_005379514.1| - 0.00071 19.1 2.6 0.32 10.5 0.0 4.1 4 1 0 4 4 4 1 Sigma-70, region 4 HTH_34 PF13601.6 gi|383318673|ref|YP_005379514.1| - 0.0012 19.0 0.1 1.1 9.4 0.0 3.1 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_9 PF08221.11 gi|383318673|ref|YP_005379514.1| - 0.0014 18.6 0.0 0.034 14.2 0.0 2.5 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain IF2_N PF04760.15 gi|383318673|ref|YP_005379514.1| - 0.0027 17.5 0.6 0.19 11.6 0.0 2.8 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region HTH_27 PF13463.6 gi|383318673|ref|YP_005379514.1| - 0.0028 18.1 0.1 0.71 10.4 0.0 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|383318673|ref|YP_005379514.1| - 0.0033 17.3 2.4 0.097 12.5 0.1 2.6 3 0 0 3 3 3 1 TFIIE alpha subunit HTH_AsnC-type PF13404.6 gi|383318673|ref|YP_005379514.1| - 0.0036 17.1 0.1 1.6 8.7 0.1 3.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_10 PF04967.12 gi|383318673|ref|YP_005379514.1| - 0.0042 16.8 0.0 0.14 12.0 0.0 2.4 2 0 0 2 2 2 1 HTH DNA binding domain HTH_Crp_2 PF13545.6 gi|383318673|ref|YP_005379514.1| - 0.0046 16.9 0.0 3.1 7.9 0.0 2.6 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain FeoC PF09012.10 gi|383318673|ref|YP_005379514.1| - 0.0066 16.5 0.0 0.08 13.0 0.0 2.4 3 0 0 3 3 2 1 FeoC like transcriptional regulator DUF2250 PF10007.9 gi|383318673|ref|YP_005379514.1| - 0.017 15.3 0.1 8.5 6.6 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HxlR PF01638.17 gi|383318673|ref|YP_005379514.1| - 0.026 14.4 0.0 2.8 7.9 0.0 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix DDRGK PF09756.9 gi|383318673|ref|YP_005379514.1| - 0.028 14.0 0.8 0.23 11.0 0.0 2.2 2 1 0 2 2 2 0 DDRGK domain HTH_40 PF14493.6 gi|383318673|ref|YP_005379514.1| - 0.046 14.2 0.7 1.1 9.7 0.2 2.9 2 1 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|383318673|ref|YP_005379514.1| - 0.051 13.1 0.0 19 4.9 0.0 3.1 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family HTH_CodY PF08222.11 gi|383318673|ref|YP_005379514.1| - 0.095 12.3 0.0 0.3 10.7 0.0 1.8 1 0 0 1 1 1 0 CodY helix-turn-helix domain Sigma70_r3 PF04539.16 gi|383318673|ref|YP_005379514.1| - 0.098 12.8 0.6 4.6 7.4 0.0 3.1 4 0 0 4 4 4 0 Sigma-70 region 3 AAA PF00004.29 gi|383318674|ref|YP_005379515.1| - 3.8e-98 325.0 0.0 5.2e-49 166.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|383318674|ref|YP_005379515.1| - 6.4e-34 115.5 3.5 9.7e-17 60.5 0.3 3.1 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|383318674|ref|YP_005379515.1| - 1.3e-31 108.6 0.1 1e-30 105.7 0.4 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|383318674|ref|YP_005379515.1| - 1.3e-17 64.4 0.0 3.4e-08 33.8 0.0 3.3 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|383318674|ref|YP_005379515.1| - 9.2e-17 61.2 0.0 7.2e-09 35.6 0.0 3.1 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|383318674|ref|YP_005379515.1| - 1.2e-15 57.0 0.0 5.7e-15 54.8 0.0 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|383318674|ref|YP_005379515.1| - 2.9e-14 53.8 0.0 2.3e-05 24.8 0.0 3.7 2 1 1 3 3 3 2 AAA ATPase domain TIP49 PF06068.13 gi|383318674|ref|YP_005379515.1| - 1.3e-11 44.4 0.0 9.3e-05 21.8 0.0 2.8 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|383318674|ref|YP_005379515.1| - 4.3e-11 43.2 0.4 0.0022 18.3 0.0 4.1 2 2 2 4 4 4 2 AAA domain AAA_5 PF07728.14 gi|383318674|ref|YP_005379515.1| - 9.1e-11 41.9 1.1 0.00047 20.2 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|383318674|ref|YP_005379515.1| - 2.1e-10 40.9 0.0 9.1e-05 22.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|383318674|ref|YP_005379515.1| - 2.9e-10 40.3 0.0 0.00029 20.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|383318674|ref|YP_005379515.1| - 3.6e-08 34.0 0.0 0.01 16.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|383318674|ref|YP_005379515.1| - 4.1e-08 33.1 0.0 0.0041 16.9 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein Vps4_C PF09336.10 gi|383318674|ref|YP_005379515.1| - 5.2e-08 32.8 0.4 0.0023 17.9 0.0 3.1 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain AAA_24 PF13479.6 gi|383318674|ref|YP_005379515.1| - 1e-07 31.9 0.1 0.027 14.2 0.0 3.6 3 0 0 3 3 3 2 AAA domain Mg_chelatase PF01078.21 gi|383318674|ref|YP_005379515.1| - 1.5e-07 31.0 0.1 0.01 15.3 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|383318674|ref|YP_005379515.1| - 5.4e-07 30.0 0.0 0.032 14.6 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.6 gi|383318674|ref|YP_005379515.1| - 5.5e-07 30.0 0.0 0.042 14.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|383318674|ref|YP_005379515.1| - 7.8e-07 28.8 0.0 0.015 14.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|383318674|ref|YP_005379515.1| - 9.7e-07 28.6 0.2 0.091 12.5 0.0 3.5 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|383318674|ref|YP_005379515.1| - 1.7e-06 27.9 0.0 0.037 13.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|383318674|ref|YP_005379515.1| - 2.4e-06 27.0 0.8 0.058 12.7 0.0 2.7 3 0 0 3 3 2 2 Zeta toxin DUF2075 PF09848.9 gi|383318674|ref|YP_005379515.1| - 3.2e-05 23.3 0.0 0.14 11.4 0.0 2.5 3 0 0 3 3 2 2 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.6 gi|383318674|ref|YP_005379515.1| - 3.4e-05 24.3 0.0 0.51 10.8 0.0 3.0 3 0 0 3 3 2 2 AAA domain DUF815 PF05673.13 gi|383318674|ref|YP_005379515.1| - 3.6e-05 23.0 0.0 0.23 10.6 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|383318674|ref|YP_005379515.1| - 4.5e-05 24.0 0.0 0.25 11.9 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_25 PF13481.6 gi|383318674|ref|YP_005379515.1| - 5.9e-05 22.7 3.5 0.63 9.6 0.0 3.7 3 1 0 3 3 3 1 AAA domain TsaE PF02367.17 gi|383318674|ref|YP_005379515.1| - 7.9e-05 22.6 0.0 0.26 11.3 0.0 2.7 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|383318674|ref|YP_005379515.1| - 8.1e-05 22.2 0.2 0.27 10.7 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein AAA_19 PF13245.6 gi|383318674|ref|YP_005379515.1| - 8.4e-05 22.9 0.4 0.65 10.3 0.0 3.0 3 0 0 3 3 3 2 AAA domain Parvo_NS1 PF01057.17 gi|383318674|ref|YP_005379515.1| - 0.00015 21.0 0.0 0.2 10.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ATPase_2 PF01637.18 gi|383318674|ref|YP_005379515.1| - 0.00016 21.7 0.0 1.5 8.7 0.0 3.4 2 2 1 3 3 3 2 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|383318674|ref|YP_005379515.1| - 0.00024 20.9 0.1 0.87 9.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|383318674|ref|YP_005379515.1| - 0.00026 20.4 6.7 0.86 8.9 0.0 4.4 4 1 1 5 5 5 2 KaiC NACHT PF05729.12 gi|383318674|ref|YP_005379515.1| - 0.00053 20.0 0.1 1 9.3 0.0 3.0 3 0 0 3 3 3 1 NACHT domain AAA_11 PF13086.6 gi|383318674|ref|YP_005379515.1| - 0.00055 19.8 1.2 1.1 8.9 0.0 2.8 3 0 0 3 3 3 2 AAA domain NB-ARC PF00931.22 gi|383318674|ref|YP_005379515.1| - 0.00075 18.8 0.0 1.1 8.4 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain TniB PF05621.11 gi|383318674|ref|YP_005379515.1| - 0.0009 18.7 0.0 0.89 8.9 0.0 3.2 4 0 0 4 4 2 1 Bacterial TniB protein NTPase_1 PF03266.15 gi|383318674|ref|YP_005379515.1| - 0.0013 18.7 3.2 3.5 7.5 0.0 4.3 2 2 2 4 4 4 0 NTPase Bac_DnaA PF00308.18 gi|383318674|ref|YP_005379515.1| - 0.0013 18.6 0.0 1.6 8.5 0.0 2.8 2 1 0 2 2 2 1 Bacterial dnaA protein Viral_helicase1 PF01443.18 gi|383318674|ref|YP_005379515.1| - 0.0017 18.1 0.0 0.029 14.1 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Sigma54_activ_2 PF14532.6 gi|383318674|ref|YP_005379515.1| - 0.0027 17.8 0.0 3.7 7.6 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain Cytidylate_kin PF02224.18 gi|383318674|ref|YP_005379515.1| - 0.0051 16.6 0.1 1.8 8.2 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase IPT PF01745.16 gi|383318674|ref|YP_005379515.1| - 0.01 15.2 0.2 2.4 7.5 0.1 2.3 2 0 0 2 2 2 0 Isopentenyl transferase Guanylate_kin PF00625.21 gi|383318674|ref|YP_005379515.1| - 0.018 14.7 0.1 4.3 7.0 0.0 3.4 2 1 1 3 3 3 0 Guanylate kinase ATP-synt_ab PF00006.25 gi|383318674|ref|YP_005379515.1| - 0.031 14.0 0.0 3.8 7.1 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SSE PF00437.20 gi|383318674|ref|YP_005379515.1| - 0.035 13.2 0.0 2.1 7.3 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein ResIII PF04851.15 gi|383318674|ref|YP_005379515.1| - 0.041 13.9 0.0 16 5.5 0.0 2.7 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit MCM PF00493.23 gi|383318674|ref|YP_005379515.1| - 0.047 12.8 0.0 4.1 6.4 0.0 2.7 3 0 0 3 3 3 0 MCM P-loop domain Cytidylate_kin2 PF13189.6 gi|383318674|ref|YP_005379515.1| - 0.049 13.8 0.2 16 5.6 0.0 2.9 3 0 0 3 3 2 0 Cytidylate kinase-like family AFG1_ATPase PF03969.16 gi|383318674|ref|YP_005379515.1| - 0.05 12.5 0.0 3.9 6.3 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase Rad17 PF03215.15 gi|383318674|ref|YP_005379515.1| - 0.055 13.4 0.0 20 5.1 0.0 2.8 3 1 0 3 3 2 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|383318674|ref|YP_005379515.1| - 0.065 13.0 0.0 13 5.6 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain SKI PF01202.22 gi|383318674|ref|YP_005379515.1| - 0.073 13.2 0.5 14 5.8 0.0 3.1 3 0 0 3 3 2 0 Shikimate kinase Hydin_ADK PF17213.3 gi|383318674|ref|YP_005379515.1| - 0.085 13.1 1.2 10 6.3 0.0 2.6 3 0 0 3 3 2 0 Hydin Adenylate kinase-like domain DUF2130 PF09903.9 gi|383318674|ref|YP_005379515.1| - 0.12 11.6 2.3 1.8 7.8 1.0 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2130) HSP20 PF00011.21 gi|383318675|ref|YP_005379516.1| - 1.6e-12 47.5 1.5 3.5e-11 43.2 1.5 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|383318675|ref|YP_005379516.1| - 2.5e-10 39.7 0.0 3.4e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|383318675|ref|YP_005379516.1| - 0.00033 21.6 0.0 0.0005 21.0 0.0 1.3 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|383318675|ref|YP_005379516.1| - 0.089 12.9 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 GvpH AAA PF00004.29 gi|383318676|ref|YP_005379517.1| - 2.2e-98 325.8 0.0 1.1e-49 168.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|383318676|ref|YP_005379517.1| - 1.9e-34 117.2 3.3 2.1e-18 65.9 0.5 3.5 3 0 0 3 3 3 2 AAA+ lid domain CDC48_N PF02359.18 gi|383318676|ref|YP_005379517.1| - 3.1e-32 110.6 0.0 1.8e-31 108.2 0.1 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|383318676|ref|YP_005379517.1| - 1.8e-18 66.0 0.0 4.4e-16 58.4 0.0 3.1 2 1 1 3 3 3 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|383318676|ref|YP_005379517.1| - 2.8e-15 56.4 0.0 1.5e-07 31.3 0.0 3.1 2 2 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|383318676|ref|YP_005379517.1| - 1.4e-12 48.3 1.3 3.9e-05 24.1 0.1 3.9 2 2 0 2 2 2 2 AAA ATPase domain TIP49 PF06068.13 gi|383318676|ref|YP_005379517.1| - 8e-12 45.0 0.7 0.00059 19.1 0.0 3.8 4 0 0 4 4 3 2 TIP49 P-loop domain AAA_2 PF07724.14 gi|383318676|ref|YP_005379517.1| - 2.3e-11 44.1 0.0 4e-05 23.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|383318676|ref|YP_005379517.1| - 3.2e-11 43.7 0.9 0.0035 17.6 0.0 4.2 2 2 2 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|383318676|ref|YP_005379517.1| - 9.7e-11 42.0 0.0 5.4e-05 23.4 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|383318676|ref|YP_005379517.1| - 1.5e-10 41.2 1.0 0.00013 22.0 0.1 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|383318676|ref|YP_005379517.1| - 3.4e-08 34.1 0.0 0.0079 16.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|383318676|ref|YP_005379517.1| - 6.2e-08 32.6 0.0 0.0076 16.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.6 gi|383318676|ref|YP_005379517.1| - 1.4e-07 31.6 0.0 0.0097 15.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|383318676|ref|YP_005379517.1| - 1.7e-07 31.7 0.0 0.022 15.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|383318676|ref|YP_005379517.1| - 1.5e-06 28.6 0.0 0.075 13.4 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|383318676|ref|YP_005379517.1| - 2.3e-06 27.2 0.3 0.08 12.3 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|383318676|ref|YP_005379517.1| - 2.4e-06 27.6 0.0 0.038 14.0 0.0 2.8 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Vps4_C PF09336.10 gi|383318676|ref|YP_005379517.1| - 7.7e-06 25.8 1.2 0.4 10.7 0.0 4.2 4 0 0 4 4 4 1 Vps4 C terminal oligomerisation domain AAA_7 PF12775.7 gi|383318676|ref|YP_005379517.1| - 1.3e-05 24.8 0.0 0.13 11.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region ATPase PF06745.13 gi|383318676|ref|YP_005379517.1| - 2.4e-05 23.8 0.4 0.69 9.2 0.0 3.7 4 0 0 4 4 4 2 KaiC ABC_tran PF00005.27 gi|383318676|ref|YP_005379517.1| - 2.9e-05 24.6 0.0 0.12 12.9 0.0 2.8 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.6 gi|383318676|ref|YP_005379517.1| - 3.1e-05 23.8 0.0 0.074 12.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|383318676|ref|YP_005379517.1| - 3.6e-05 23.0 0.0 0.24 10.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|383318676|ref|YP_005379517.1| - 5.3e-05 23.0 0.0 0.51 10.0 0.0 2.8 3 0 0 3 3 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|383318676|ref|YP_005379517.1| - 5.3e-05 23.1 0.0 0.33 10.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|383318676|ref|YP_005379517.1| - 6.1e-05 22.6 0.5 0.47 9.9 0.0 3.0 3 0 0 3 3 2 2 PhoH-like protein Zeta_toxin PF06414.12 gi|383318676|ref|YP_005379517.1| - 8.5e-05 21.9 0.2 0.26 10.6 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin DUF2075 PF09848.9 gi|383318676|ref|YP_005379517.1| - 0.00013 21.3 0.0 0.24 10.6 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|383318676|ref|YP_005379517.1| - 0.00014 21.7 0.2 0.64 9.7 0.0 2.9 3 0 0 3 3 2 2 AAA domain NACHT PF05729.12 gi|383318676|ref|YP_005379517.1| - 0.00014 21.8 0.8 0.73 9.7 0.1 3.4 5 0 0 5 5 3 2 NACHT domain ATPase_2 PF01637.18 gi|383318676|ref|YP_005379517.1| - 0.00018 21.5 0.0 0.58 10.0 0.0 3.3 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|383318676|ref|YP_005379517.1| - 0.0002 20.6 0.0 0.7 9.0 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_17 PF13207.6 gi|383318676|ref|YP_005379517.1| - 0.0004 20.8 0.0 2.9 8.3 0.0 3.4 3 0 0 3 3 3 1 AAA domain Parvo_NS1 PF01057.17 gi|383318676|ref|YP_005379517.1| - 0.00043 19.5 0.1 0.56 9.2 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_11 PF13086.6 gi|383318676|ref|YP_005379517.1| - 0.00044 20.1 0.0 0.47 10.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|383318676|ref|YP_005379517.1| - 0.0007 19.2 6.3 0.9 9.1 0.3 3.8 2 2 0 2 2 2 2 AAA domain NTPase_1 PF03266.15 gi|383318676|ref|YP_005379517.1| - 0.0014 18.6 0.4 2.5 8.0 0.0 3.6 3 1 1 4 4 3 1 NTPase Viral_helicase1 PF01443.18 gi|383318676|ref|YP_005379517.1| - 0.0014 18.4 0.0 0.15 11.7 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|383318676|ref|YP_005379517.1| - 0.0017 18.7 0.3 3.3 8.0 0.1 2.8 2 1 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|383318676|ref|YP_005379517.1| - 0.0043 16.8 0.1 2.1 8.0 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase Cytidylate_kin2 PF13189.6 gi|383318676|ref|YP_005379517.1| - 0.0086 16.2 0.1 1.8 8.6 0.0 2.7 3 0 0 3 3 2 1 Cytidylate kinase-like family Bac_DnaA PF00308.18 gi|383318676|ref|YP_005379517.1| - 0.0098 15.8 0.0 3.7 7.3 0.0 2.8 2 0 0 2 2 2 0 Bacterial dnaA protein Sigma54_activ_2 PF14532.6 gi|383318676|ref|YP_005379517.1| - 0.013 15.6 0.0 7.6 6.6 0.0 2.7 2 0 0 2 2 2 0 Sigma-54 interaction domain ResIII PF04851.15 gi|383318676|ref|YP_005379517.1| - 0.014 15.4 0.0 8.5 6.3 0.0 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Hydin_ADK PF17213.3 gi|383318676|ref|YP_005379517.1| - 0.017 15.4 0.0 5 7.4 0.0 2.4 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Guanylate_kin PF00625.21 gi|383318676|ref|YP_005379517.1| - 0.018 14.8 0.1 13 5.4 0.0 3.8 2 1 1 3 3 3 0 Guanylate kinase AFG1_ATPase PF03969.16 gi|383318676|ref|YP_005379517.1| - 0.025 13.5 0.0 3.9 6.3 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Torsin PF06309.11 gi|383318676|ref|YP_005379517.1| - 0.039 14.1 0.0 9.7 6.3 0.0 2.7 2 0 0 2 2 2 0 Torsin RRM_DME PF15628.6 gi|383318676|ref|YP_005379517.1| - 0.057 13.6 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 RRM in Demeter DAP3 PF10236.9 gi|383318676|ref|YP_005379517.1| - 0.11 11.6 0.0 6.1 5.9 0.0 2.4 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 CPT PF07931.12 gi|383318676|ref|YP_005379517.1| - 0.14 12.0 0.0 24 4.7 0.0 3.0 3 0 0 3 3 2 0 Chloramphenicol phosphotransferase-like protein HEPN_SAV_6107 PF18726.1 gi|383318676|ref|YP_005379517.1| - 0.14 12.6 0.2 1.7 9.2 0.0 2.8 4 0 0 4 4 2 0 SAV_6107-like HEPN SKI PF01202.22 gi|383318676|ref|YP_005379517.1| - 0.15 12.2 0.0 22 5.1 0.0 2.8 2 0 0 2 2 2 0 Shikimate kinase AAA_29 PF13555.6 gi|383318676|ref|YP_005379517.1| - 0.16 11.7 0.0 23 4.8 0.0 3.0 3 0 0 3 3 3 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|383318676|ref|YP_005379517.1| - 0.18 11.7 0.0 27 4.6 0.0 2.6 2 1 0 2 2 2 0 Rad17 P-loop domain PRC PF05239.16 gi|383318677|ref|YP_005379518.1| - 1.9e-10 40.7 0.2 2.1e-10 40.5 0.2 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF1614 PF07758.11 gi|383318678|ref|YP_005379519.1| - 5.1e-52 176.3 9.0 5.1e-52 176.3 9.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DUF111 PF01969.17 gi|383318679|ref|YP_005379520.1| - 1.1e-69 235.3 0.0 1.4e-69 235.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF111 DUF2733 PF10813.8 gi|383318679|ref|YP_005379520.1| - 0.71 9.7 2.6 2.5 8.0 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2733) Na_Ca_ex PF01699.24 gi|383318680|ref|YP_005379521.1| - 2.4e-22 79.5 33.0 5.4e-13 49.2 12.7 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein VPDSG-CTERM PF18205.1 gi|383318680|ref|YP_005379521.1| - 0.019 14.8 1.6 0.019 14.8 1.6 4.4 4 0 0 4 4 4 0 VPDSG-CTERM motif DUF2456 PF10445.9 gi|383318680|ref|YP_005379521.1| - 0.14 12.3 1.6 0.45 10.6 0.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2456) PTA_PTB PF01515.19 gi|383318681|ref|YP_005379522.1| - 4.2e-11 42.7 0.0 5.7e-07 29.2 0.0 3.0 2 1 1 3 3 3 3 Phosphate acetyl/butaryl transferase DUF1743 PF08489.11 gi|383318682|ref|YP_005379523.1| - 7.8e-07 29.2 0.8 0.00057 19.9 0.0 3.5 2 1 2 4 4 4 3 Domain of unknown function (DUF1743) Big_1 PF02369.16 gi|383318683|ref|YP_005379524.1| - 1.1e-23 83.0 48.1 1.4e-07 31.4 2.5 7.2 7 0 0 7 7 7 5 Bacterial Ig-like domain (group 1) VWA PF00092.28 gi|383318683|ref|YP_005379524.1| - 4.8e-18 66.0 4.3 1.1e-17 64.8 1.5 2.4 2 0 0 2 2 2 1 von Willebrand factor type A domain Invasin_D3 PF09134.10 gi|383318683|ref|YP_005379524.1| - 2.1e-16 60.0 39.2 2.5e-08 34.1 1.0 6.9 8 0 0 8 8 8 4 Invasin, domain 3 VWA_2 PF13519.6 gi|383318683|ref|YP_005379524.1| - 1.5e-09 38.5 0.3 8e-09 36.1 0.0 2.3 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|383318683|ref|YP_005379524.1| - 9.7e-05 22.3 0.0 0.00018 21.4 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain MG4 PF17789.1 gi|383318683|ref|YP_005379524.1| - 0.00088 19.4 14.3 0.2 11.8 0.1 6.2 7 0 0 7 7 7 2 Macroglobulin domain MG4 Glyco_hydro2_C5 PF18565.1 gi|383318683|ref|YP_005379524.1| - 0.0045 16.8 0.7 0.35 10.7 0.1 3.2 4 0 0 4 4 4 1 Glycoside hydrolase family 2 C-terminal domain 5 VWA_CoxE PF05762.14 gi|383318683|ref|YP_005379524.1| - 0.0049 16.3 0.0 0.28 10.6 0.0 2.2 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein Nup88 PF10168.9 gi|383318683|ref|YP_005379524.1| - 0.073 10.9 0.0 0.11 10.3 0.0 1.1 1 0 0 1 1 1 0 Nuclear pore component PepSY PF03413.19 gi|383318684|ref|YP_005379525.1| - 0.021 15.4 0.1 0.05 14.2 0.0 1.9 2 1 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF929 PF06053.11 gi|383318684|ref|YP_005379525.1| - 0.062 12.6 0.2 0.087 12.1 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF929) Phage_sheath_1N PF17481.2 gi|383318686|ref|YP_005379527.1| - 0.084 13.4 0.8 0.18 12.3 0.8 1.7 1 1 0 1 1 1 0 Phage tail sheath protein beta-sandwich domain CT_A_B PF02626.15 gi|383318686|ref|YP_005379527.1| - 0.089 12.4 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Carboxyltransferase domain, subdomain A and B Methylase_S PF01420.19 gi|383318687|ref|YP_005379528.1| - 0.011 16.0 0.4 0.017 15.4 0.4 1.3 1 0 0 1 1 1 0 Type I restriction modification DNA specificity domain Pilin_N PF07790.11 gi|383318687|ref|YP_005379528.1| - 0.061 14.3 4.7 0.26 12.3 4.7 2.1 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal BACON PF13004.7 gi|383318687|ref|YP_005379528.1| - 0.25 11.4 5.6 0.16 12.0 2.6 2.1 2 0 0 2 2 2 0 Putative binding domain, N-terminal NTP_transf_2 PF01909.23 gi|383318690|ref|YP_005379531.1| - 9.3e-11 41.9 0.1 1.4e-10 41.3 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|383318690|ref|YP_005379531.1| - 2.4e-08 33.9 0.1 4.2e-08 33.2 0.1 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|383318690|ref|YP_005379531.1| - 0.0023 17.7 0.0 0.003 17.3 0.0 1.2 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 HTH_27 PF13463.6 gi|383318690|ref|YP_005379531.1| - 0.016 15.7 0.0 0.043 14.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|383318690|ref|YP_005379531.1| - 0.086 12.7 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HEPN PF05168.14 gi|383318691|ref|YP_005379532.1| - 2.6e-12 46.9 1.2 3.5e-12 46.5 1.2 1.1 1 0 0 1 1 1 1 HEPN domain GLYCAM-1 PF05242.11 gi|383318691|ref|YP_005379532.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1) Corona_NS3b PF03053.14 gi|383318691|ref|YP_005379532.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 ORF3b coronavirus protein MMR_HSR1_Xtn PF16897.5 gi|383318692|ref|YP_005379533.1| - 8.3e-36 122.2 1.0 2.2e-35 120.9 1.0 1.8 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|383318692|ref|YP_005379533.1| - 3.5e-22 78.6 0.0 8.1e-22 77.5 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|383318692|ref|YP_005379533.1| - 1.8e-20 72.7 0.0 4e-20 71.6 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|383318692|ref|YP_005379533.1| - 2.6e-15 56.3 0.7 2.4e-14 53.2 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|383318692|ref|YP_005379533.1| - 0.00015 21.8 0.6 0.014 15.3 0.1 2.4 2 0 0 2 2 2 1 RsgA GTPase Dynamin_N PF00350.23 gi|383318692|ref|YP_005379533.1| - 0.00036 20.6 1.0 1.1 9.3 0.1 2.9 2 1 1 3 3 3 2 Dynamin family GTP_EFTU PF00009.27 gi|383318692|ref|YP_005379533.1| - 0.00094 18.8 0.6 0.78 9.3 0.0 3.4 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain MeaB PF03308.16 gi|383318692|ref|YP_005379533.1| - 0.0018 17.3 0.1 0.026 13.5 0.0 2.3 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 gi|383318692|ref|YP_005379533.1| - 0.0039 17.0 0.1 3 7.5 0.1 2.8 2 1 0 2 2 2 2 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|383318692|ref|YP_005379533.1| - 0.011 15.4 1.8 2.9 7.5 0.0 3.0 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|383318692|ref|YP_005379533.1| - 0.024 14.9 0.0 0.06 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain YchF-GTPase_C PF06071.13 gi|383318692|ref|YP_005379533.1| - 0.043 14.0 0.0 0.77 10.0 0.0 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF933) Roc PF08477.13 gi|383318692|ref|YP_005379533.1| - 0.059 13.6 0.1 0.38 11.0 0.0 2.1 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|383318692|ref|YP_005379533.1| - 0.076 12.4 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_16 PF13191.6 gi|383318692|ref|YP_005379533.1| - 0.1 13.0 0.0 0.3 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain KTI12 PF08433.10 gi|383318692|ref|YP_005379533.1| - 0.12 11.8 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ABC_tran PF00005.27 gi|383318693|ref|YP_005379534.1| - 4.4e-33 114.7 0.0 5.8e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383318693|ref|YP_005379534.1| - 3.6e-12 46.7 0.4 7.1e-06 26.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|383318693|ref|YP_005379534.1| - 0.002 18.7 0.0 0.003 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|383318693|ref|YP_005379534.1| - 0.0064 16.2 0.0 0.017 14.9 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|383318693|ref|YP_005379534.1| - 0.0082 16.2 0.3 0.044 13.8 0.1 2.2 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|383318693|ref|YP_005379534.1| - 0.017 15.6 0.1 0.058 13.8 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|383318693|ref|YP_005379534.1| - 0.032 13.6 0.0 0.22 10.9 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|383318693|ref|YP_005379534.1| - 0.078 13.4 0.0 0.15 12.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|383318693|ref|YP_005379534.1| - 0.097 12.1 0.0 0.74 9.2 0.0 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|383318693|ref|YP_005379534.1| - 0.13 11.9 0.0 1.9 8.1 0.0 2.0 1 1 0 2 2 2 0 AAA ATPase domain cobW PF02492.19 gi|383318693|ref|YP_005379534.1| - 0.14 11.7 0.3 0.26 10.8 0.3 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.6 gi|383318693|ref|YP_005379534.1| - 0.16 12.3 0.0 0.65 10.3 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC2_membrane_3 PF12698.7 gi|383318694|ref|YP_005379535.1| - 2.4e-40 138.7 25.6 2.7e-40 138.6 25.6 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|383318694|ref|YP_005379535.1| - 9.4e-31 106.9 23.3 9.4e-31 106.9 23.3 2.4 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|383318694|ref|YP_005379535.1| - 7.3e-13 48.4 23.2 1.6e-12 47.3 23.2 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383318694|ref|YP_005379535.1| - 2.4 8.1 23.7 0.059 13.3 15.2 2.6 3 1 0 3 3 3 0 ABC-2 family transporter protein AAA PF00004.29 gi|383318695|ref|YP_005379536.1| - 9.3e-46 155.5 0.2 3.3e-45 153.7 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|383318695|ref|YP_005379536.1| - 6.7e-16 57.8 0.4 1.5e-15 56.7 0.4 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_16 PF13191.6 gi|383318695|ref|YP_005379536.1| - 5.2e-07 30.2 0.3 2.8e-05 24.5 0.3 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|383318695|ref|YP_005379536.1| - 1.4e-05 25.1 1.0 8.5e-05 22.6 0.2 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|383318695|ref|YP_005379536.1| - 2.6e-05 24.0 0.3 0.00011 22.0 0.0 2.1 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|383318695|ref|YP_005379536.1| - 4.5e-05 23.6 0.1 0.0002 21.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|383318695|ref|YP_005379536.1| - 0.00055 20.2 2.0 0.013 15.8 0.1 2.8 2 1 0 3 3 2 1 AAA domain RNA_helicase PF00910.22 gi|383318695|ref|YP_005379536.1| - 0.00082 19.7 0.0 0.0032 17.9 0.0 2.0 2 0 0 2 2 1 1 RNA helicase TIP49 PF06068.13 gi|383318695|ref|YP_005379536.1| - 0.0009 18.5 0.0 0.0017 17.6 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain DUF815 PF05673.13 gi|383318695|ref|YP_005379536.1| - 0.001 18.3 0.0 0.0024 17.1 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|383318695|ref|YP_005379536.1| - 0.0018 18.0 0.0 0.0034 17.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein ATPase PF06745.13 gi|383318695|ref|YP_005379536.1| - 0.0043 16.4 0.3 0.039 13.3 0.0 2.7 2 1 0 2 2 2 1 KaiC AAA_33 PF13671.6 gi|383318695|ref|YP_005379536.1| - 0.0062 16.7 0.0 0.014 15.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|383318695|ref|YP_005379536.1| - 0.0067 15.8 0.1 0.015 14.7 0.1 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI HOOK PF05622.12 gi|383318695|ref|YP_005379536.1| - 0.0069 14.6 0.7 0.0085 14.3 0.7 1.2 1 0 0 1 1 1 1 HOOK protein YscO PF07321.12 gi|383318695|ref|YP_005379536.1| - 0.0083 16.1 1.6 0.017 15.1 1.6 1.4 1 0 0 1 1 1 1 Type III secretion protein YscO AAA_18 PF13238.6 gi|383318695|ref|YP_005379536.1| - 0.0084 16.7 0.3 0.11 13.1 0.0 2.4 2 1 0 2 2 2 1 AAA domain Parvo_NS1 PF01057.17 gi|383318695|ref|YP_005379536.1| - 0.0094 15.1 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_24 PF13479.6 gi|383318695|ref|YP_005379536.1| - 0.01 15.6 0.0 0.026 14.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|383318695|ref|YP_005379536.1| - 0.014 15.1 0.0 0.063 13.0 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF3450 PF11932.8 gi|383318695|ref|YP_005379536.1| - 0.021 14.1 1.6 0.041 13.2 1.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) AAA_7 PF12775.7 gi|383318695|ref|YP_005379536.1| - 0.024 14.2 0.0 0.046 13.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 gi|383318695|ref|YP_005379536.1| - 0.031 14.3 0.0 0.098 12.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain PhoH PF02562.16 gi|383318695|ref|YP_005379536.1| - 0.048 13.1 0.2 0.2 11.1 0.1 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_28 PF13521.6 gi|383318695|ref|YP_005379536.1| - 0.056 13.7 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|383318695|ref|YP_005379536.1| - 0.058 13.4 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|383318695|ref|YP_005379536.1| - 0.062 13.2 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) bZIP_1 PF00170.21 gi|383318695|ref|YP_005379536.1| - 0.066 13.3 7.4 0.11 12.6 3.7 2.5 2 0 0 2 2 2 0 bZIP transcription factor AAA_30 PF13604.6 gi|383318695|ref|YP_005379536.1| - 0.069 12.9 0.2 0.23 11.2 0.2 2.0 1 1 0 1 1 1 0 AAA domain Prot_ATP_OB_N PF17758.1 gi|383318695|ref|YP_005379536.1| - 0.084 12.5 0.5 0.42 10.3 0.0 2.4 3 0 0 3 3 2 0 Proteasomal ATPase OB N-terminal domain Spc29 PF17082.5 gi|383318695|ref|YP_005379536.1| - 0.098 12.5 0.4 0.18 11.6 0.4 1.4 1 0 0 1 1 1 0 Spindle Pole Component 29 NACHT PF05729.12 gi|383318695|ref|YP_005379536.1| - 0.12 12.2 0.0 0.31 10.9 0.0 1.7 1 0 0 1 1 1 0 NACHT domain GrpE PF01025.19 gi|383318695|ref|YP_005379536.1| - 0.14 11.8 2.8 0.16 11.6 1.3 1.8 2 0 0 2 2 2 0 GrpE zf-C4H2 PF10146.9 gi|383318695|ref|YP_005379536.1| - 0.16 12.3 0.9 0.28 11.5 0.9 1.4 1 0 0 1 1 1 0 Zinc finger-containing protein AAA_25 PF13481.6 gi|383318695|ref|YP_005379536.1| - 0.22 11.1 2.6 0.32 10.5 0.2 2.4 2 1 1 3 3 3 0 AAA domain HALZ PF02183.18 gi|383318695|ref|YP_005379536.1| - 3.3 8.0 12.5 4 7.7 5.7 2.7 1 1 1 2 2 2 0 Homeobox associated leucine zipper tRNA-synt_2b PF00587.25 gi|383318697|ref|YP_005379538.1| - 5.6e-22 78.6 0.1 9.2e-22 77.9 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|383318697|ref|YP_005379538.1| - 5.7e-18 64.9 0.6 1.2e-17 63.8 0.6 1.6 1 0 0 1 1 1 1 Anticodon binding domain AhpC-TSA PF00578.21 gi|383318698|ref|YP_005379539.1| - 2.8e-38 130.6 0.0 3.6e-38 130.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|383318698|ref|YP_005379539.1| - 3.6e-20 72.2 0.0 4.4e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|383318698|ref|YP_005379539.1| - 8.8e-06 25.5 0.0 2.6e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin SCO1-SenC PF02630.14 gi|383318698|ref|YP_005379539.1| - 0.00035 20.5 0.0 0.00056 19.8 0.0 1.3 1 0 0 1 1 1 1 SCO1/SenC GSHPx PF00255.19 gi|383318698|ref|YP_005379539.1| - 0.1 12.1 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Glutathione peroxidase Bactofilin PF04519.13 gi|383318699|ref|YP_005379540.1| - 2e-07 31.2 0.4 7.2e-07 29.4 0.0 1.9 1 1 1 2 2 2 1 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|383318699|ref|YP_005379540.1| - 0.082 12.7 2.5 19 5.1 0.3 3.5 3 1 1 4 4 4 0 Bacterial transferase hexapeptide (six repeats) Chorion_1 PF01723.16 gi|383318699|ref|YP_005379540.1| - 0.13 12.2 0.1 3.1 7.8 0.0 2.0 1 1 1 2 2 2 0 Chorion protein Sua5_yciO_yrdC PF01300.18 gi|383318700|ref|YP_005379541.1| - 2.3e-40 138.0 0.0 3.7e-40 137.3 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination HypF_C PF17788.1 gi|383318700|ref|YP_005379541.1| - 3.7e-27 95.0 0.1 6.4e-27 94.2 0.1 1.4 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|383318700|ref|YP_005379541.1| - 2.2e-23 82.5 0.0 4.4e-23 81.5 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase zf-HYPF PF07503.12 gi|383318700|ref|YP_005379541.1| - 2.2e-22 78.5 12.1 1.1e-14 53.9 5.1 2.4 2 0 0 2 2 2 2 HypF finger Peptidase_M22 PF00814.25 gi|383318700|ref|YP_005379541.1| - 1.1e-08 35.1 0.2 4.6e-07 29.8 0.0 2.2 2 0 0 2 2 2 1 Glycoprotease family BcrAD_BadFG PF01869.20 gi|383318700|ref|YP_005379541.1| - 0.0012 18.5 0.1 0.002 17.7 0.1 1.3 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Carbam_trans_N PF02543.15 gi|383318700|ref|YP_005379541.1| - 0.0093 15.7 2.2 0.067 12.8 0.2 2.8 2 2 1 3 3 3 1 Carbamoyltransferase N-terminus zf-RING_5 PF14634.6 gi|383318700|ref|YP_005379541.1| - 7.6 6.6 8.9 13 5.8 0.2 2.7 3 0 0 3 3 3 0 zinc-RING finger domain ArsR PF09824.9 gi|383318701|ref|YP_005379542.1| - 9.7e-64 213.8 0.0 1.1e-63 213.6 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator SMC_ScpB PF04079.16 gi|383318701|ref|YP_005379542.1| - 0.013 15.1 0.1 0.068 12.8 0.0 1.9 1 1 1 2 2 2 0 Segregation and condensation complex subunit ScpB HTH_24 PF13412.6 gi|383318702|ref|YP_005379543.1| - 1.7e-10 40.3 0.0 3.6e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|383318702|ref|YP_005379543.1| - 1.1e-08 34.8 0.0 6.3e-08 32.4 0.0 2.1 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|383318702|ref|YP_005379543.1| - 4.8e-07 29.6 0.0 1.1e-06 28.5 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_Crp_2 PF13545.6 gi|383318702|ref|YP_005379543.1| - 1.2e-06 28.4 0.0 2.6e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|383318702|ref|YP_005379543.1| - 0.00011 22.6 0.0 0.00092 19.7 0.0 2.4 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|383318702|ref|YP_005379543.1| - 0.00017 21.4 0.1 0.00061 19.7 0.1 1.9 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|383318702|ref|YP_005379543.1| - 0.00019 21.1 0.0 0.00053 19.7 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_45 PF14947.6 gi|383318702|ref|YP_005379543.1| - 0.00043 20.2 0.0 0.00067 19.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_29 PF13551.6 gi|383318702|ref|YP_005379543.1| - 0.00065 19.7 0.0 0.0062 16.5 0.0 2.5 3 0 0 3 3 3 1 Winged helix-turn helix HTH_13 PF11972.8 gi|383318702|ref|YP_005379543.1| - 0.00096 19.2 0.0 0.0036 17.3 0.0 2.0 2 1 0 2 2 1 1 HTH DNA binding domain Fe_dep_repress PF01325.19 gi|383318702|ref|YP_005379543.1| - 0.0022 18.1 0.0 0.0049 17.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Mnd1 PF03962.15 gi|383318702|ref|YP_005379543.1| - 0.0026 18.0 0.0 0.015 15.5 0.0 2.1 2 0 0 2 2 2 1 Mnd1 HTH domain HTH_5 PF01022.20 gi|383318702|ref|YP_005379543.1| - 0.0038 17.1 0.0 0.0076 16.1 0.0 1.6 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|383318702|ref|YP_005379543.1| - 0.0055 17.0 0.1 0.012 16.0 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_3 PF01381.22 gi|383318702|ref|YP_005379543.1| - 0.02 14.9 0.1 0.08 13.0 0.1 2.0 1 0 0 1 1 1 0 Helix-turn-helix DUF4423 PF14394.6 gi|383318702|ref|YP_005379543.1| - 0.025 14.3 0.0 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) YdaS_antitoxin PF15943.5 gi|383318702|ref|YP_005379543.1| - 0.028 14.3 0.1 0.55 10.1 0.0 2.4 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_10 PF04967.12 gi|383318702|ref|YP_005379543.1| - 0.037 13.8 0.0 0.075 12.9 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Mrr_N PF14338.6 gi|383318702|ref|YP_005379543.1| - 0.041 14.0 0.0 0.18 11.9 0.0 1.9 1 1 0 1 1 1 0 Mrr N-terminal domain HemN_C PF06969.16 gi|383318702|ref|YP_005379543.1| - 0.059 13.4 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 HemN C-terminal domain HTH_40 PF14493.6 gi|383318702|ref|YP_005379543.1| - 0.065 13.7 0.0 2 8.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain P22_Cro PF14549.6 gi|383318702|ref|YP_005379543.1| - 0.073 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro DUF4364 PF14277.6 gi|383318702|ref|YP_005379543.1| - 0.078 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|383318702|ref|YP_005379543.1| - 0.13 12.1 0.0 0.38 10.7 0.0 1.8 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|383318702|ref|YP_005379543.1| - 0.15 12.1 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RuvB_C PF05491.13 gi|383318702|ref|YP_005379543.1| - 0.15 11.9 0.1 1.1 9.2 0.0 2.3 3 0 0 3 3 3 0 RuvB C-terminal winged helix domain Phage_rep_O PF04492.13 gi|383318702|ref|YP_005379543.1| - 0.2 12.2 0.0 0.43 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage replication protein O PCI PF01399.27 gi|383318702|ref|YP_005379543.1| - 0.22 12.0 0.2 0.35 11.4 0.2 1.3 1 0 0 1 1 1 0 PCI domain DEAD PF00270.29 gi|383318703|ref|YP_005379544.1| - 5.4e-22 78.4 0.0 1.1e-21 77.4 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|383318703|ref|YP_005379544.1| - 5.2e-16 59.0 0.0 1.1e-15 57.9 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|383318703|ref|YP_005379544.1| - 4.6e-07 30.0 0.0 8.2e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|383318703|ref|YP_005379544.1| - 0.11 11.2 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain PIN PF01850.21 gi|383318704|ref|YP_005379545.1| - 1.4e-06 28.8 0.0 1.8e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|383318704|ref|YP_005379545.1| - 0.003 18.3 0.0 0.0034 18.1 0.0 1.4 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|383318704|ref|YP_005379545.1| - 0.098 12.4 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) Prok-RING_1 PF14446.6 gi|383318706|ref|YP_005379547.1| - 4.5e-08 32.9 11.2 2.8e-07 30.3 11.4 1.8 1 1 1 2 2 2 1 Prokaryotic RING finger family 1 C1_1 PF00130.22 gi|383318706|ref|YP_005379547.1| - 0.0012 18.7 6.5 0.031 14.2 7.8 2.0 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_2 PF03107.16 gi|383318706|ref|YP_005379547.1| - 0.0019 18.4 5.7 0.012 15.9 1.7 2.2 2 0 0 2 2 2 1 C1 domain zf-ribbon_3 PF13248.6 gi|383318706|ref|YP_005379547.1| - 0.006 16.0 5.0 0.049 13.0 1.6 2.4 2 0 0 2 2 2 1 zinc-ribbon domain Zn_ribbon_17 PF17120.5 gi|383318706|ref|YP_005379547.1| - 0.0069 16.0 6.6 0.019 14.6 4.9 2.0 1 1 1 2 2 2 1 Zinc-ribbon, C4HC2 type zf-C3H2C3 PF17122.5 gi|383318706|ref|YP_005379547.1| - 0.014 15.5 7.0 0.2 11.7 7.8 2.5 1 1 1 2 2 2 0 Zinc-finger zinc_ribbon_2 PF13240.6 gi|383318706|ref|YP_005379547.1| - 0.023 14.4 0.8 0.023 14.4 0.8 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PHD PF00628.29 gi|383318706|ref|YP_005379547.1| - 0.061 13.2 4.1 0.061 13.2 4.1 2.1 1 1 1 2 2 2 0 PHD-finger DNA_RNApol_7kD PF03604.13 gi|383318706|ref|YP_005379547.1| - 0.14 11.9 0.5 0.14 11.9 0.5 2.7 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_11 PF17123.5 gi|383318706|ref|YP_005379547.1| - 0.16 11.7 3.5 1.3 8.8 0.8 2.6 2 1 1 3 3 3 0 RING-like zinc finger zf-RING_5 PF14634.6 gi|383318706|ref|YP_005379547.1| - 0.24 11.4 7.1 1.7 8.7 1.9 2.3 2 0 0 2 2 2 0 zinc-RING finger domain ADK_lid PF05191.14 gi|383318706|ref|YP_005379547.1| - 0.27 11.2 11.2 4 7.5 4.2 2.8 2 1 0 2 2 2 0 Adenylate kinase, active site lid Rhodanese_C PF12368.8 gi|383318706|ref|YP_005379547.1| - 0.31 11.4 8.4 4.7 7.7 5.4 2.8 1 1 0 2 2 2 0 Rhodanase C-terminal zf-C2H2_6 PF13912.6 gi|383318706|ref|YP_005379547.1| - 0.4 10.7 5.7 30 4.8 0.2 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger OrfB_Zn_ribbon PF07282.11 gi|383318706|ref|YP_005379547.1| - 0.47 10.4 6.8 2.3 8.2 6.5 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2_4 PF13894.6 gi|383318706|ref|YP_005379547.1| - 0.53 11.3 6.5 14 6.9 0.4 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger Zn-C2H2_12 PF18112.1 gi|383318706|ref|YP_005379547.1| - 0.53 10.8 0.5 0.53 10.8 0.5 2.5 3 0 0 3 3 3 0 Autophagy receptor zinc finger-C2H2 domain zf-C2H2 PF00096.26 gi|383318706|ref|YP_005379547.1| - 8.4 7.1 8.9 52 4.6 0.2 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type Glycos_trans_3N PF02885.17 gi|383318707|ref|YP_005379548.1| - 1.5e-16 60.0 0.4 2.8e-16 59.1 0.4 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.21 gi|383318707|ref|YP_005379548.1| - 7.7e-15 55.2 4.2 4.4e-14 52.7 2.9 2.5 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.13 gi|383318707|ref|YP_005379548.1| - 1.1e-12 47.5 0.1 5.6e-12 45.1 0.0 2.4 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Molydop_binding PF01568.21 gi|383318707|ref|YP_005379548.1| - 1.2e-06 28.5 0.2 2.4e-06 27.5 0.2 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain HlyD_3 PF13437.6 gi|383318707|ref|YP_005379548.1| - 0.0011 19.7 0.2 0.15 12.7 0.0 3.3 3 0 0 3 3 3 1 HlyD family secretion protein Biotin_lipoyl PF00364.22 gi|383318707|ref|YP_005379548.1| - 0.0019 18.0 1.4 0.3 10.9 0.0 4.1 4 0 0 4 4 4 1 Biotin-requiring enzyme DUF2254 PF10011.9 gi|383318707|ref|YP_005379548.1| - 0.0028 16.5 0.0 0.0046 15.8 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) CDC48_N PF02359.18 gi|383318707|ref|YP_005379548.1| - 0.0033 17.6 0.5 0.012 15.7 0.3 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain LPAM_1 PF08139.12 gi|383318708|ref|YP_005379549.1| - 0.16 12.5 4.5 0.37 11.4 4.5 1.7 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site CytB6-F_Fe-S PF08802.10 gi|383318708|ref|YP_005379549.1| - 1.8 8.7 5.3 6.2 6.9 1.4 2.4 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit AAA PF00004.29 gi|383318709|ref|YP_005379550.1| - 2.9e-96 319.0 0.0 2e-47 160.9 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|383318709|ref|YP_005379550.1| - 1.6e-31 107.8 1.5 2.2e-15 56.1 0.1 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|383318709|ref|YP_005379550.1| - 3e-27 94.6 0.4 9.5e-27 93.0 0.4 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.6 gi|383318709|ref|YP_005379550.1| - 1.7e-15 57.8 0.1 1.4e-06 28.8 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|383318709|ref|YP_005379550.1| - 7.6e-15 54.4 0.0 1.8e-14 53.3 0.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|383318709|ref|YP_005379550.1| - 5.6e-14 52.6 0.0 4e-07 30.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|383318709|ref|YP_005379550.1| - 8.2e-14 51.6 0.0 1.3e-05 25.0 0.0 2.9 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|383318709|ref|YP_005379550.1| - 4.1e-11 42.7 0.2 0.00071 18.9 0.0 3.3 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|383318709|ref|YP_005379550.1| - 8.8e-11 42.2 0.5 0.0047 17.2 0.0 4.5 2 2 1 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|383318709|ref|YP_005379550.1| - 3.2e-10 40.2 0.9 0.00054 20.0 0.0 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|383318709|ref|YP_005379550.1| - 3.1e-09 37.1 0.0 0.00045 20.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|383318709|ref|YP_005379550.1| - 7e-09 35.8 0.0 0.0023 18.0 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.6 gi|383318709|ref|YP_005379550.1| - 9e-09 36.0 0.0 0.0027 18.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|383318709|ref|YP_005379550.1| - 1.1e-08 35.0 0.0 0.006 16.3 0.0 3.0 3 0 0 3 3 3 2 IstB-like ATP binding protein ABC_tran PF00005.27 gi|383318709|ref|YP_005379550.1| - 1.3e-08 35.5 0.0 0.0015 19.0 0.0 2.4 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.12 gi|383318709|ref|YP_005379550.1| - 6.7e-08 32.6 0.2 0.48 10.3 0.0 4.2 3 1 1 4 4 4 2 NACHT domain AAA_28 PF13521.6 gi|383318709|ref|YP_005379550.1| - 1.6e-07 31.7 0.0 0.015 15.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|383318709|ref|YP_005379550.1| - 3e-07 30.3 0.0 0.043 13.5 0.0 2.9 2 1 0 2 2 2 2 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|383318709|ref|YP_005379550.1| - 5.3e-07 30.0 0.0 0.036 14.4 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|383318709|ref|YP_005379550.1| - 8e-07 29.0 0.0 0.01 15.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|383318709|ref|YP_005379550.1| - 1.1e-06 28.3 0.3 0.026 13.9 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|383318709|ref|YP_005379550.1| - 3.8e-06 26.4 0.0 0.22 10.8 0.0 3.4 3 0 0 3 3 3 2 KaiC AAA_7 PF12775.7 gi|383318709|ref|YP_005379550.1| - 6.4e-06 25.8 0.0 0.076 12.5 0.0 2.6 3 0 0 3 3 2 2 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|383318709|ref|YP_005379550.1| - 2e-05 23.9 0.0 0.038 13.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ATPase_2 PF01637.18 gi|383318709|ref|YP_005379550.1| - 2.3e-05 24.4 0.2 0.52 10.2 0.0 3.4 2 2 0 2 2 2 2 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|383318709|ref|YP_005379550.1| - 3.5e-05 23.2 0.0 0.11 11.7 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|383318709|ref|YP_005379550.1| - 4.4e-05 23.0 0.1 0.34 10.3 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein AAA_3 PF07726.11 gi|383318709|ref|YP_005379550.1| - 6.8e-05 22.7 0.0 0.84 9.5 0.0 3.1 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|383318709|ref|YP_005379550.1| - 7.9e-05 22.0 0.1 0.048 12.9 0.0 2.7 2 0 0 2 2 2 1 Zeta toxin TsaE PF02367.17 gi|383318709|ref|YP_005379550.1| - 0.00016 21.6 0.0 0.34 10.9 0.0 2.7 3 0 0 3 3 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activ_2 PF14532.6 gi|383318709|ref|YP_005379550.1| - 0.00017 21.7 0.0 0.4 10.8 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NB-ARC PF00931.22 gi|383318709|ref|YP_005379550.1| - 0.00019 20.7 0.0 0.42 9.8 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain AAA_17 PF13207.6 gi|383318709|ref|YP_005379550.1| - 0.00033 21.1 0.0 0.8 10.1 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|383318709|ref|YP_005379550.1| - 0.0004 20.3 0.0 0.89 9.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|383318709|ref|YP_005379550.1| - 0.00045 20.0 0.1 1.2 8.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|383318709|ref|YP_005379550.1| - 0.00072 19.9 1.0 1.8 8.9 0.0 2.8 2 1 0 3 3 2 2 AAA domain DUF815 PF05673.13 gi|383318709|ref|YP_005379550.1| - 0.0009 18.5 0.0 0.5 9.5 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Vps4_C PF09336.10 gi|383318709|ref|YP_005379550.1| - 0.0016 18.4 0.1 1.6 8.8 0.0 3.2 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain Bac_DnaA PF00308.18 gi|383318709|ref|YP_005379550.1| - 0.0017 18.2 0.0 0.7 9.7 0.0 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein TniB PF05621.11 gi|383318709|ref|YP_005379550.1| - 0.0018 17.7 0.0 6.2 6.2 0.0 3.6 3 1 1 4 4 3 0 Bacterial TniB protein Guanylate_kin PF00625.21 gi|383318709|ref|YP_005379550.1| - 0.0022 17.7 0.3 17 5.1 0.0 4.1 2 2 2 4 4 4 0 Guanylate kinase KAP_NTPase PF07693.14 gi|383318709|ref|YP_005379550.1| - 0.0047 16.2 0.1 0.24 10.6 0.0 2.7 2 1 0 2 2 2 1 KAP family P-loop domain AAA_25 PF13481.6 gi|383318709|ref|YP_005379550.1| - 0.0069 16.0 8.0 1.3 8.6 0.5 4.1 2 2 1 3 3 3 1 AAA domain Viral_helicase1 PF01443.18 gi|383318709|ref|YP_005379550.1| - 0.0081 15.9 0.0 4.6 6.9 0.0 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase MCM PF00493.23 gi|383318709|ref|YP_005379550.1| - 0.021 13.9 0.0 7.6 5.6 0.0 2.8 2 1 0 2 2 2 0 MCM P-loop domain ResIII PF04851.15 gi|383318709|ref|YP_005379550.1| - 0.023 14.7 0.0 2 8.4 0.0 2.5 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit PduV-EutP PF10662.9 gi|383318709|ref|YP_005379550.1| - 0.033 14.0 0.0 12 5.6 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.15 gi|383318709|ref|YP_005379550.1| - 0.035 14.0 1.0 13 5.7 0.0 3.1 2 1 1 3 3 3 0 NTPase AAA_29 PF13555.6 gi|383318709|ref|YP_005379550.1| - 0.038 13.7 0.0 12 5.7 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain SRPRB PF09439.10 gi|383318709|ref|YP_005379550.1| - 0.042 13.3 0.0 4.8 6.6 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|383318709|ref|YP_005379550.1| - 0.076 13.2 0.0 12 6.1 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Cytidylate_kin PF02224.18 gi|383318709|ref|YP_005379550.1| - 0.08 12.7 0.1 7.5 6.2 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase AFG1_ATPase PF03969.16 gi|383318709|ref|YP_005379550.1| - 0.11 11.4 0.0 6.5 5.5 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase Rad17 PF03215.15 gi|383318709|ref|YP_005379550.1| - 0.13 12.2 0.0 9.2 6.1 0.0 2.6 2 0 0 2 2 2 0 Rad17 P-loop domain MMR_HSR1 PF01926.23 gi|383318709|ref|YP_005379550.1| - 0.18 11.9 0.1 36 4.5 0.0 2.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase polyprenyl_synt PF00348.17 gi|383318710|ref|YP_005379551.1| - 8.2e-45 152.9 0.3 1.7e-44 151.9 0.3 1.5 1 1 1 2 2 2 1 Polyprenyl synthetase SecD_SecF PF02355.16 gi|383318711|ref|YP_005379552.1| - 2e-29 102.3 17.7 3.2e-29 101.7 17.7 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|383318711|ref|YP_005379552.1| - 5.9e-07 28.8 0.2 1.6e-06 27.4 0.1 1.8 1 1 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.15 gi|383318711|ref|YP_005379552.1| - 0.41 9.5 25.2 0.046 12.7 20.7 1.6 1 1 0 2 2 2 0 MMPL family Glycophorin_A PF01102.18 gi|383318711|ref|YP_005379552.1| - 0.63 10.3 5.7 6.1 7.1 0.9 3.5 2 1 0 3 3 3 0 Glycophorin A BCD PF15461.6 gi|383318711|ref|YP_005379552.1| - 1.9 7.9 18.1 0.16 11.5 0.9 2.5 3 0 0 3 3 3 0 Beta-carotene 15,15'-dioxygenase SecD_SecF PF02355.16 gi|383318712|ref|YP_005379553.1| - 4.1e-15 55.7 10.6 7.6e-15 54.8 10.6 1.3 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|383318712|ref|YP_005379553.1| - 0.001 18.1 12.3 0.0019 17.2 12.3 1.4 1 0 0 1 1 1 1 MMPL family TMEMspv1-c74-12 PF11044.8 gi|383318712|ref|YP_005379553.1| - 0.013 15.4 1.6 0.013 15.4 1.6 3.0 4 0 0 4 4 4 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Sec_GG PF07549.14 gi|383318712|ref|YP_005379553.1| - 0.026 14.0 0.6 0.058 12.9 0.1 1.9 2 0 0 2 2 2 0 SecD/SecF GG Motif ETRAMP PF09716.10 gi|383318712|ref|YP_005379553.1| - 0.034 14.2 1.4 14 5.9 0.0 3.3 3 0 0 3 3 3 0 Malarial early transcribed membrane protein (ETRAMP) Sterol-sensing PF12349.8 gi|383318712|ref|YP_005379553.1| - 0.65 9.8 6.8 0.51 10.2 5.3 1.6 1 1 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation CxxCxxCC PF03692.15 gi|383318713|ref|YP_005379554.1| - 7e-09 36.3 6.3 8.8e-08 32.7 6.3 2.2 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Usp PF00582.26 gi|383318714|ref|YP_005379555.1| - 3.8e-26 92.3 0.2 5.2e-26 91.8 0.2 1.2 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|383318714|ref|YP_005379555.1| - 0.0044 17.1 0.0 0.0054 16.7 0.0 1.1 1 0 0 1 1 1 1 DNA photolyase RNB PF00773.19 gi|383318715|ref|YP_005379556.1| - 4.6e-61 206.9 0.0 7.8e-61 206.2 0.0 1.3 1 0 0 1 1 1 1 RNB domain dsrm PF00035.26 gi|383318715|ref|YP_005379556.1| - 2.9e-14 53.5 0.0 5.2e-11 43.1 0.0 2.8 3 0 0 3 3 3 2 Double-stranded RNA binding motif PyocinActivator PF11112.8 gi|383318715|ref|YP_005379556.1| - 0.07 13.3 0.0 4.1 7.6 0.0 3.3 3 0 0 3 3 3 0 Pyocin activator protein PrtN DND1_DSRM PF14709.7 gi|383318715|ref|YP_005379556.1| - 0.12 12.7 1.5 0.41 10.9 0.1 2.6 3 1 0 3 3 3 0 double strand RNA binding domain from DEAD END PROTEIN 1 Peptidase_S8 PF00082.22 gi|383318716|ref|YP_005379557.1| - 3e-63 213.9 17.6 6.7e-63 212.7 17.6 1.6 1 0 0 1 1 1 1 Subtilase family Calx-beta PF03160.14 gi|383318716|ref|YP_005379557.1| - 1.7e-22 79.4 0.0 8e-13 48.4 0.0 2.5 2 0 0 2 2 2 2 Calx-beta domain Inhibitor_I9 PF05922.16 gi|383318716|ref|YP_005379557.1| - 3e-09 37.4 0.0 6.7e-09 36.3 0.0 1.6 1 0 0 1 1 1 1 Peptidase inhibitor I9 Cadherin_5 PF17892.1 gi|383318716|ref|YP_005379557.1| - 1.2 9.1 5.2 5.6 7.0 0.1 3.4 3 0 0 3 3 3 0 Cadherin-like domain CarboxypepD_reg PF13620.6 gi|383318716|ref|YP_005379557.1| - 1.6 9.1 8.8 0.83 10.0 1.2 4.1 4 0 0 4 4 4 0 Carboxypeptidase regulatory-like domain DEC-1_N PF04625.13 gi|383318717|ref|YP_005379558.1| - 0.87 8.5 2.6 1.3 7.9 2.6 1.2 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region MoeA_N PF03453.17 gi|383318718|ref|YP_005379559.1| - 5.8e-45 152.9 0.5 1.2e-44 151.9 0.2 1.6 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|383318718|ref|YP_005379559.1| - 2.5e-21 75.8 0.1 4e-21 75.2 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|383318718|ref|YP_005379559.1| - 1.4e-15 57.2 3.1 2.8e-15 56.2 0.1 2.9 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) PBP_like PF12727.7 gi|383318719|ref|YP_005379560.1| - 4.2e-59 198.9 0.0 7e-59 198.2 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|383318719|ref|YP_005379560.1| - 1.6e-44 151.4 1.6 5.4e-44 149.7 1.9 1.7 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|383318719|ref|YP_005379560.1| - 1.5e-22 79.8 0.1 2.8e-22 78.9 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|383318719|ref|YP_005379560.1| - 3.2e-12 46.5 0.6 9.6e-12 44.9 0.1 2.2 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|383318719|ref|YP_005379560.1| - 0.0015 18.4 0.0 0.0041 16.9 0.0 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|383318719|ref|YP_005379560.1| - 0.0021 17.5 0.0 0.071 12.5 0.0 3.0 2 1 1 3 3 3 1 LysR substrate binding domain PBP_like_2 PF12849.7 gi|383318719|ref|YP_005379560.1| - 0.019 14.6 0.6 0.19 11.4 0.0 2.5 2 1 0 2 2 2 0 PBP superfamily domain Phosphonate-bd PF12974.7 gi|383318719|ref|YP_005379560.1| - 0.037 13.6 0.0 0.074 12.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein MFS_1 PF07690.16 gi|383318720|ref|YP_005379561.1| - 7.9e-43 146.7 53.7 4.3e-27 94.9 21.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|383318720|ref|YP_005379561.1| - 5.1e-13 48.7 29.4 5.8e-07 28.7 10.3 2.2 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|383318720|ref|YP_005379561.1| - 1.1e-08 34.4 36.7 2.9e-05 23.1 8.9 3.2 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_3 PF05977.13 gi|383318720|ref|YP_005379561.1| - 3.2e-08 32.4 21.7 4.7e-08 31.9 21.7 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector TFX_C PF14601.6 gi|383318721|ref|YP_005379562.1| - 1.3e-27 95.6 0.8 2.1e-27 94.9 0.8 1.4 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|383318721|ref|YP_005379562.1| - 1.1e-06 28.0 2.8 2.1e-06 27.2 2.8 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.7 gi|383318721|ref|YP_005379562.1| - 3e-05 24.0 0.6 6.9e-05 22.8 0.6 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 gi|383318721|ref|YP_005379562.1| - 0.00027 20.4 0.3 0.00045 19.7 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_3 PF01381.22 gi|383318721|ref|YP_005379562.1| - 0.00063 19.7 1.2 0.0013 18.7 0.8 1.8 1 1 1 2 2 2 1 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|383318721|ref|YP_005379562.1| - 0.003 17.2 0.2 0.0047 16.6 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|383318721|ref|YP_005379562.1| - 0.0031 17.2 0.7 0.006 16.3 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|383318721|ref|YP_005379562.1| - 0.0038 17.5 0.7 0.0073 16.6 0.7 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|383318721|ref|YP_005379562.1| - 0.0049 16.6 2.9 0.013 15.3 2.9 1.7 1 1 0 1 1 1 1 Homeodomain-like domain RepB PF07506.11 gi|383318721|ref|YP_005379562.1| - 0.011 15.8 0.3 0.016 15.3 0.3 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_Crp_2 PF13545.6 gi|383318721|ref|YP_005379562.1| - 0.018 15.0 0.2 0.041 13.9 0.2 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_7 PF02796.15 gi|383318721|ref|YP_005379562.1| - 0.02 15.0 0.7 0.04 14.0 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_28 PF13518.6 gi|383318721|ref|YP_005379562.1| - 0.058 13.5 1.5 0.1 12.7 1.1 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|383318721|ref|YP_005379562.1| - 0.07 13.0 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 MarR family FdhD-NarQ PF02634.15 gi|383318722|ref|YP_005379563.1| - 3.7e-54 183.9 0.0 4.6e-54 183.6 0.0 1.1 1 0 0 1 1 1 1 FdhD/NarQ family HMG-CoA_red PF00368.18 gi|383318723|ref|YP_005379564.1| - 2.8e-116 388.5 5.4 3.4e-116 388.3 5.4 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase MMR_HSR1 PF01926.23 gi|383318724|ref|YP_005379565.1| - 2.2e-18 66.4 0.0 3.1e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|383318724|ref|YP_005379565.1| - 5.2e-12 45.5 0.0 6.3e-11 42.1 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|383318724|ref|YP_005379565.1| - 1.3e-06 28.1 0.0 0.0014 18.2 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|383318724|ref|YP_005379565.1| - 2.7e-05 24.1 0.0 0.0084 16.0 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase Roc PF08477.13 gi|383318724|ref|YP_005379565.1| - 0.00027 21.2 0.4 0.0026 18.0 0.4 2.4 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|383318724|ref|YP_005379565.1| - 0.0047 16.6 0.1 0.064 12.9 0.1 2.1 1 1 0 1 1 1 1 Ras family SRPRB PF09439.10 gi|383318724|ref|YP_005379565.1| - 0.014 14.8 0.0 0.05 13.0 0.0 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit ATP_bind_1 PF03029.17 gi|383318724|ref|YP_005379565.1| - 0.038 13.8 0.2 2 8.1 0.1 2.3 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|383318724|ref|YP_005379565.1| - 0.042 13.9 0.1 0.11 12.6 0.1 1.5 1 1 1 2 2 2 0 Dynamin family Ins_allergen_rp PF06757.13 gi|383318724|ref|YP_005379565.1| - 0.043 13.8 0.0 0.057 13.4 0.0 1.2 1 0 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification MobB PF03205.14 gi|383318724|ref|YP_005379565.1| - 0.073 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 gi|383318724|ref|YP_005379565.1| - 0.093 13.2 0.0 0.2 12.2 0.0 1.4 1 1 0 1 1 1 0 ABC transporter Arf PF00025.21 gi|383318724|ref|YP_005379565.1| - 0.12 11.8 0.3 0.9 9.0 0.3 2.3 1 1 0 1 1 1 0 ADP-ribosylation factor family CLP1_P PF16575.5 gi|383318724|ref|YP_005379565.1| - 0.14 12.0 0.0 0.61 9.9 0.0 1.9 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_29 PF13555.6 gi|383318724|ref|YP_005379565.1| - 0.15 11.8 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|383318724|ref|YP_005379565.1| - 0.16 11.7 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Sec61_beta PF03911.16 gi|383318726|ref|YP_005379567.1| - 3.4e-16 59.0 0.3 4.2e-16 58.7 0.3 1.1 1 0 0 1 1 1 1 Sec61beta family Amidohydro_1 PF01979.20 gi|383318727|ref|YP_005379568.1| - 7.6e-30 104.4 0.3 9.7e-29 100.8 0.3 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|383318727|ref|YP_005379568.1| - 9.1e-12 45.2 4.5 2e-11 44.1 0.5 2.4 1 1 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.22 gi|383318727|ref|YP_005379568.1| - 1.3e-06 28.0 0.0 2e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Usp PF00582.26 gi|383318728|ref|YP_005379569.1| - 1.7e-36 125.9 0.2 1.9e-36 125.7 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.16 gi|383318728|ref|YP_005379569.1| - 0.0013 19.4 0.1 0.0018 18.9 0.1 1.4 1 1 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DNA_photolyase PF00875.18 gi|383318728|ref|YP_005379569.1| - 0.052 13.5 0.0 0.15 12.1 0.0 1.6 1 1 0 1 1 1 0 DNA photolyase CBS PF00571.28 gi|383318729|ref|YP_005379570.1| - 1.5e-43 147.0 18.7 2.2e-14 53.6 0.4 4.4 5 0 0 5 5 5 4 CBS domain GAF PF01590.26 gi|383318729|ref|YP_005379570.1| - 0.011 16.3 0.1 13 6.4 0.0 3.0 2 1 1 3 3 3 0 GAF domain DUF1743 PF08489.11 gi|383318730|ref|YP_005379571.1| - 7.7e-43 145.3 0.0 1.3e-42 144.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|383318730|ref|YP_005379571.1| - 0.00039 20.3 0.0 0.00079 19.4 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|383318730|ref|YP_005379571.1| - 0.0012 19.0 0.0 0.0026 17.9 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RNA_POL_M_15KD PF02150.16 gi|383318730|ref|YP_005379571.1| - 0.013 15.4 1.8 0.026 14.4 1.8 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit HypA PF01155.19 gi|383318730|ref|YP_005379571.1| - 0.015 15.3 0.0 0.062 13.3 0.1 1.9 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|383318730|ref|YP_005379571.1| - 0.051 13.5 0.9 0.12 12.3 0.9 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|383318730|ref|YP_005379571.1| - 0.087 12.7 1.0 0.16 11.9 1.0 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_RNApol_7kD PF03604.13 gi|383318730|ref|YP_005379571.1| - 0.24 11.1 2.5 0.81 9.4 2.5 2.0 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin_2 PF18073.1 gi|383318730|ref|YP_005379571.1| - 2.5 7.9 5.4 0.34 10.7 0.6 1.9 2 0 0 2 2 2 0 Rubredoxin metal binding domain HTH_3 PF01381.22 gi|383318731|ref|YP_005379572.1| - 6.9e-12 45.2 0.3 1.3e-11 44.4 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|383318731|ref|YP_005379572.1| - 5.5e-09 35.9 0.4 6.9e-08 32.4 0.2 2.3 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|383318731|ref|YP_005379572.1| - 1.3e-05 25.5 0.0 3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|383318731|ref|YP_005379572.1| - 6.4e-05 22.8 0.0 0.00016 21.5 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.6 gi|383318731|ref|YP_005379572.1| - 0.0023 17.7 0.2 0.005 16.7 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|383318731|ref|YP_005379572.1| - 0.033 13.8 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|383318731|ref|YP_005379572.1| - 0.077 13.4 0.1 0.16 12.5 0.1 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MMPL PF03176.15 gi|383318732|ref|YP_005379573.1| - 4.1e-51 173.9 22.1 1.7e-26 92.9 1.5 2.6 3 0 0 3 3 3 2 MMPL family Sterol-sensing PF12349.8 gi|383318732|ref|YP_005379573.1| - 3.1e-10 40.1 14.4 5.5e-07 29.5 2.9 3.6 3 1 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.19 gi|383318732|ref|YP_005379573.1| - 3.8e-08 31.5 18.9 1.9e-05 22.6 3.5 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Patched PF02460.18 gi|383318732|ref|YP_005379573.1| - 0.0016 16.6 23.9 0.0027 15.9 9.5 2.3 2 0 0 2 2 2 2 Patched family SecD_SecF PF02355.16 gi|383318732|ref|YP_005379573.1| - 0.0021 17.5 7.5 0.0021 17.5 7.5 4.3 4 0 0 4 4 4 1 Protein export membrane protein EMC3_TMCO1 PF01956.16 gi|383318732|ref|YP_005379573.1| - 0.058 13.1 11.9 0.014 15.1 5.4 2.9 3 0 0 3 3 3 0 Integral membrane protein EMC3/TMCO1-like NPCBM_assoc PF10633.9 gi|383318733|ref|YP_005379574.1| - 1.9e-11 44.0 4.0 3.4e-05 24.0 0.1 4.5 5 0 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|383318733|ref|YP_005379574.1| - 8.4e-06 26.0 1.8 0.21 11.8 0.0 4.3 3 2 0 3 3 3 2 CARDB DUF11 PF01345.18 gi|383318733|ref|YP_005379574.1| - 0.00055 20.2 15.1 0.063 13.6 0.3 4.6 3 2 0 3 3 3 2 Domain of unknown function DUF11 HTH_24 PF13412.6 gi|383318734|ref|YP_005379575.1| - 2.4e-07 30.2 0.0 3.6e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|383318734|ref|YP_005379575.1| - 0.00015 21.6 0.0 0.0004 20.2 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|383318734|ref|YP_005379575.1| - 0.001 18.9 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|383318734|ref|YP_005379575.1| - 0.0027 17.5 0.0 0.0041 16.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|383318734|ref|YP_005379575.1| - 0.0027 17.6 0.0 0.0043 16.9 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|383318734|ref|YP_005379575.1| - 0.024 14.5 0.2 0.031 14.1 0.2 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF86 PF01934.17 gi|383318734|ref|YP_005379575.1| - 0.027 14.3 0.0 0.029 14.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF86 HTH_20 PF12840.7 gi|383318734|ref|YP_005379575.1| - 0.039 14.0 0.0 0.047 13.8 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|383318734|ref|YP_005379575.1| - 0.06 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Transglut_core PF01841.19 gi|383318735|ref|YP_005379576.1| - 4.3e-11 43.3 0.1 9.2e-11 42.2 0.1 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF3258 PF11646.8 gi|383318736|ref|YP_005379577.1| - 0.084 13.0 0.0 0.24 11.6 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF3258 AAA_32 PF13654.6 gi|383318737|ref|YP_005379578.1| - 1.2e-34 120.0 0.0 1.4e-24 86.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain Lon_C PF05362.13 gi|383318737|ref|YP_005379578.1| - 3.5e-33 114.9 2.1 5.7e-33 114.2 2.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain Mg_chelatase PF01078.21 gi|383318737|ref|YP_005379578.1| - 1e-17 64.3 0.3 1.3e-10 41.0 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|383318737|ref|YP_005379578.1| - 6.9e-17 61.7 0.1 1.4e-09 37.9 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.6 gi|383318737|ref|YP_005379578.1| - 2e-11 43.8 0.3 5.1e-11 42.5 0.3 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.14 gi|383318737|ref|YP_005379578.1| - 2.7e-11 43.6 0.0 0.00038 20.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|383318737|ref|YP_005379578.1| - 1.7e-08 33.8 0.0 0.00065 18.9 0.0 2.5 2 0 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|383318737|ref|YP_005379578.1| - 3e-07 30.9 0.0 0.0085 16.5 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|383318737|ref|YP_005379578.1| - 2.6e-06 27.7 0.0 0.00058 20.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|383318737|ref|YP_005379578.1| - 2.8e-06 27.2 0.2 0.011 15.5 0.1 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activ_2 PF14532.6 gi|383318737|ref|YP_005379578.1| - 2.9e-05 24.2 0.0 0.13 12.4 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|383318737|ref|YP_005379578.1| - 3.4e-05 23.4 0.0 0.00025 20.6 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_3 PF07726.11 gi|383318737|ref|YP_005379578.1| - 0.00011 22.1 0.1 0.41 10.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|383318737|ref|YP_005379578.1| - 0.00018 21.8 0.5 0.0022 18.3 0.5 2.3 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|383318737|ref|YP_005379578.1| - 0.0005 19.4 0.1 0.44 9.7 0.1 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain PhoH PF02562.16 gi|383318737|ref|YP_005379578.1| - 0.00054 19.5 0.1 0.0017 17.9 0.1 1.8 1 1 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.6 gi|383318737|ref|YP_005379578.1| - 0.0011 18.7 0.0 0.013 15.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|383318737|ref|YP_005379578.1| - 0.0016 19.0 0.0 0.0062 17.1 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|383318737|ref|YP_005379578.1| - 0.0035 17.7 0.0 0.05 14.0 0.0 2.5 1 1 0 1 1 1 1 AAA ATPase domain MCM_lid PF17855.1 gi|383318737|ref|YP_005379578.1| - 0.0059 17.0 0.3 0.032 14.6 0.1 2.2 1 1 1 2 2 2 1 MCM AAA-lid domain Parvo_NS1 PF01057.17 gi|383318737|ref|YP_005379578.1| - 0.006 15.7 0.0 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|383318737|ref|YP_005379578.1| - 0.011 15.6 0.1 0.052 13.5 0.0 2.1 3 0 0 3 3 2 0 NACHT domain AAA_33 PF13671.6 gi|383318737|ref|YP_005379578.1| - 0.012 15.7 0.0 0.033 14.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain IstB_IS21 PF01695.17 gi|383318737|ref|YP_005379578.1| - 0.016 15.0 0.0 0.055 13.2 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_2 PF07724.14 gi|383318737|ref|YP_005379578.1| - 0.018 15.2 0.0 8.9 6.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|383318737|ref|YP_005379578.1| - 0.02 14.0 0.0 0.048 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|383318737|ref|YP_005379578.1| - 0.021 15.4 0.0 0.081 13.4 0.0 2.0 2 0 0 2 2 2 0 ABC transporter T2SSE PF00437.20 gi|383318737|ref|YP_005379578.1| - 0.033 13.2 0.0 0.065 12.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein KTI12 PF08433.10 gi|383318737|ref|YP_005379578.1| - 0.038 13.5 0.0 0.14 11.6 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 EI24 PF07264.11 gi|383318737|ref|YP_005379578.1| - 0.038 14.2 2.5 0.07 13.4 2.5 1.3 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) AAA_PrkA PF08298.11 gi|383318737|ref|YP_005379578.1| - 0.048 12.6 0.1 3.1 6.6 0.0 2.3 2 0 0 2 2 2 0 PrkA AAA domain ResIII PF04851.15 gi|383318737|ref|YP_005379578.1| - 0.052 13.6 0.1 0.18 11.8 0.0 1.9 3 0 0 3 3 1 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|383318737|ref|YP_005379578.1| - 0.061 12.2 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TniB PF05621.11 gi|383318737|ref|YP_005379578.1| - 0.063 12.7 0.1 0.81 9.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein FtsK_SpoIIIE PF01580.18 gi|383318737|ref|YP_005379578.1| - 0.064 12.6 0.0 0.17 11.2 0.0 1.7 2 0 0 2 2 1 0 FtsK/SpoIIIE family AAA_28 PF13521.6 gi|383318737|ref|YP_005379578.1| - 0.079 13.2 0.0 0.24 11.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_10 PF12846.7 gi|383318737|ref|YP_005379578.1| - 0.083 11.8 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain PmbA_TldD PF01523.16 gi|383318738|ref|YP_005379579.1| - 2.5e-63 214.5 0.0 3.2e-63 214.2 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|383318739|ref|YP_005379580.1| - 9.3e-60 202.8 1.4 1.1e-59 202.6 1.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Inhibitor_I9 PF05922.16 gi|383318740|ref|YP_005379581.1| - 0.023 15.4 0.3 1.3 9.8 0.1 2.8 2 1 0 2 2 2 0 Peptidase inhibitor I9 Mnd1 PF03962.15 gi|383318740|ref|YP_005379581.1| - 0.12 12.7 1.2 0.36 11.2 0.1 2.3 2 1 1 3 3 3 0 Mnd1 HTH domain DUF711 PF05167.12 gi|383318742|ref|YP_005379583.1| - 6.7e-170 565.4 6.1 8.3e-170 565.1 6.1 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Sterol_MT_C PF08498.10 gi|383318742|ref|YP_005379583.1| - 0.89 9.9 3.1 17 5.8 0.4 3.2 3 0 0 3 3 3 0 Sterol methyltransferase C-terminal ACT_6 PF13740.6 gi|383318743|ref|YP_005379584.1| - 4.3e-16 58.6 1.5 4.9e-16 58.5 1.5 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|383318743|ref|YP_005379584.1| - 1.8e-09 37.2 0.5 2.3e-09 36.8 0.5 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|383318743|ref|YP_005379584.1| - 1.9e-07 31.6 1.5 2.6e-07 31.1 1.5 1.1 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|383318743|ref|YP_005379584.1| - 2.2e-05 24.1 0.1 3.6e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 ACT domain UPF0020 PF01170.18 gi|383318744|ref|YP_005379585.1| - 4.4e-24 85.3 0.0 1.7e-23 83.4 0.0 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|383318744|ref|YP_005379585.1| - 6.5e-13 49.0 0.0 1.3e-12 48.0 0.0 1.5 1 0 0 1 1 1 1 THUMP domain Methyltransf_25 PF13649.6 gi|383318744|ref|YP_005379585.1| - 8e-06 26.5 0.0 2.1e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383318744|ref|YP_005379585.1| - 4.3e-05 24.1 0.0 9.8e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383318744|ref|YP_005379585.1| - 6.9e-05 22.7 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|383318744|ref|YP_005379585.1| - 0.00043 19.8 0.0 0.0022 17.5 0.0 1.8 1 1 1 2 2 2 1 RRNA methyltransferase AviRa N6_Mtase PF02384.16 gi|383318744|ref|YP_005379585.1| - 0.00098 18.5 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Cons_hypoth95 PF03602.15 gi|383318744|ref|YP_005379585.1| - 0.0022 17.7 0.0 0.012 15.3 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical protein 95 N6_N4_Mtase PF01555.18 gi|383318744|ref|YP_005379585.1| - 0.0047 16.7 0.0 2.9 7.6 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Ubie_methyltran PF01209.18 gi|383318744|ref|YP_005379585.1| - 0.0055 16.1 0.0 0.017 14.4 0.0 1.8 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|383318744|ref|YP_005379585.1| - 0.026 14.1 0.0 0.095 12.3 0.0 1.8 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase Proton_antipo_M PF00361.20 gi|383318745|ref|YP_005379586.1| - 1.5e-51 175.4 27.1 1.5e-51 175.4 27.1 2.2 2 1 0 2 2 2 1 Proton-conducting membrane transporter HycI PF01750.18 gi|383318746|ref|YP_005379587.1| - 4.9e-12 45.8 0.0 7.3e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease Acylphosphatase PF00708.18 gi|383318747|ref|YP_005379588.1| - 9.3e-26 90.1 0.2 1e-25 89.9 0.2 1.0 1 0 0 1 1 1 1 Acylphosphatase BLUF PF04940.12 gi|383318747|ref|YP_005379588.1| - 0.0006 19.9 0.0 0.00098 19.2 0.0 1.3 1 1 0 1 1 1 1 Sensors of blue-light using FAD Gp_dh_C PF02800.20 gi|383318748|ref|YP_005379589.1| - 9.8e-23 80.5 0.0 1.4e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|383318748|ref|YP_005379589.1| - 2.1e-08 34.3 0.3 6.1e-08 32.8 0.1 1.9 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|383318748|ref|YP_005379589.1| - 2.4e-06 27.8 0.0 7.1e-06 26.3 0.0 1.9 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|383318748|ref|YP_005379589.1| - 0.0029 17.9 0.0 0.0055 17.0 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|383318748|ref|YP_005379589.1| - 0.0036 17.9 0.0 0.0087 16.7 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|383318748|ref|YP_005379589.1| - 0.087 12.2 0.1 4.5 6.6 0.1 2.4 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF2085 PF09858.9 gi|383318750|ref|YP_005379591.1| - 1.2e-29 102.6 1.2 1.2e-29 102.6 1.2 2.1 3 0 0 3 3 3 1 Predicted membrane protein (DUF2085) DUF2085 PF09858.9 gi|383318751|ref|YP_005379592.1| - 9.1e-33 112.6 2.3 9.1e-33 112.6 2.3 2.1 2 0 0 2 2 2 1 Predicted membrane protein (DUF2085) AI-2E_transport PF01594.16 gi|383318752|ref|YP_005379593.1| - 1.8e-23 83.3 47.1 5.4e-23 81.7 47.1 1.8 1 1 0 1 1 1 1 AI-2E family transporter ERGIC_N PF13850.6 gi|383318752|ref|YP_005379593.1| - 5.4 7.4 5.7 2 8.8 0.0 3.1 3 0 0 3 3 3 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) CEBP_ZZ PF16366.5 gi|383318753|ref|YP_005379594.1| - 0.031 14.5 1.1 0.034 14.4 1.1 1.2 1 0 0 1 1 1 0 Cytoplasmic polyadenylation element-binding protein ZZ domain C1_2 PF03107.16 gi|383318753|ref|YP_005379594.1| - 0.26 11.6 3.8 0.31 11.4 3.8 1.3 1 0 0 1 1 1 0 C1 domain Sensor_TM1 PF13755.6 gi|383318754|ref|YP_005379595.1| - 0.61 9.9 3.9 0.19 11.5 0.6 1.8 2 0 0 2 2 2 0 Sensor N-terminal transmembrane domain DUF1294 PF06961.13 gi|383318754|ref|YP_005379595.1| - 0.75 10.1 2.9 2.7 8.3 0.0 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1294) Romo1 PF10247.9 gi|383318754|ref|YP_005379595.1| - 6.7 7.2 14.7 9.6 6.7 5.3 3.5 3 1 0 3 3 3 0 Reactive mitochondrial oxygen species modulator 1 DUF848 PF05852.11 gi|383318756|ref|YP_005379597.1| - 0.062 13.4 0.2 0.079 13.1 0.2 1.2 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) RNase_J_C PF17770.1 gi|383318756|ref|YP_005379597.1| - 0.073 14.1 0.1 0.12 13.5 0.1 1.4 1 0 0 1 1 1 0 Ribonuclease J C-terminal domain DnaJ PF00226.31 gi|383318756|ref|YP_005379597.1| - 0.13 12.4 0.9 0.54 10.4 0.1 2.0 1 1 1 2 2 2 0 DnaJ domain CarboxypepD_reg PF13620.6 gi|383318758|ref|YP_005379599.1| - 3.2e-16 59.3 8.0 2.8e-08 33.9 2.9 2.9 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain NPP1 PF05630.11 gi|383318758|ref|YP_005379599.1| - 4.5e-05 23.7 1.4 8.7e-05 22.7 1.4 1.4 1 0 0 1 1 1 1 Necrosis inducing protein (NPP1) CarbopepD_reg_2 PF13715.6 gi|383318758|ref|YP_005379599.1| - 0.00075 19.4 6.8 0.047 13.7 0.4 2.6 2 0 0 2 2 2 2 CarboxypepD_reg-like domain SdrD_B PF17210.3 gi|383318758|ref|YP_005379599.1| - 0.0011 19.2 2.1 0.0011 19.2 2.1 3.2 4 0 0 4 4 4 1 SdrD B-like domain Big_1 PF02369.16 gi|383318758|ref|YP_005379599.1| - 0.0012 18.8 1.8 0.0031 17.5 1.0 2.2 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) Big_6 PF17936.1 gi|383318758|ref|YP_005379599.1| - 0.0038 17.5 0.3 0.02 15.2 0.1 2.4 2 0 0 2 2 2 1 Bacterial Ig domain YtfJ_HI0045 PF09695.10 gi|383318758|ref|YP_005379599.1| - 0.068 12.8 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (YtfJ_HI0045) Invasin_D3 PF09134.10 gi|383318758|ref|YP_005379599.1| - 0.094 13.0 1.7 0.49 10.7 1.7 2.2 1 0 0 1 1 1 0 Invasin, domain 3 DUF89 PF01937.19 gi|383318759|ref|YP_005379600.1| - 9.8e-54 182.6 0.0 1.1e-53 182.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Poxvirus_B22R PF04395.12 gi|383318759|ref|YP_005379600.1| - 0.007 15.9 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 Poxvirus B22R protein MMPL PF03176.15 gi|383318760|ref|YP_005379601.1| - 3.7e-98 328.5 17.9 2.4e-49 168.1 9.1 3.2 3 0 0 3 3 3 2 MMPL family ACR_tran PF00873.19 gi|383318760|ref|YP_005379601.1| - 1.1e-07 29.9 28.7 3.3e-07 28.4 9.5 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Sterol-sensing PF12349.8 gi|383318760|ref|YP_005379601.1| - 0.00017 21.4 23.6 0.049 13.5 8.0 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation TetR_N PF00440.23 gi|383318761|ref|YP_005379602.1| - 4.3e-18 64.8 0.0 7.6e-18 64.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|383318761|ref|YP_005379602.1| - 2e-05 24.8 0.2 0.0001 22.5 0.1 2.0 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|383318761|ref|YP_005379602.1| - 0.00093 19.3 0.1 0.0015 18.6 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase TetR_C_27 PF17935.1 gi|383318761|ref|YP_005379602.1| - 0.0091 16.0 0.1 0.059 13.4 0.0 2.2 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain CbiZ PF01955.18 gi|383318762|ref|YP_005379603.1| - 1.9e-42 145.6 0.1 2.3e-42 145.3 0.1 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase zf-like PF04071.12 gi|383318762|ref|YP_005379603.1| - 5.8e-25 87.0 8.0 1.3e-24 85.9 8.0 1.6 1 0 0 1 1 1 1 Cysteine-rich small domain Peripla_BP_2 PF01497.18 gi|383318763|ref|YP_005379604.1| - 5.6e-38 130.9 0.1 6.6e-38 130.6 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ATP-grasp_5 PF13549.6 gi|383318764|ref|YP_005379605.1| - 4.5e-79 265.0 0.1 7.9e-79 264.2 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|383318764|ref|YP_005379605.1| - 2.6e-56 189.3 1.5 5.5e-56 188.2 0.5 2.1 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|383318764|ref|YP_005379605.1| - 1.1e-27 96.9 0.3 5.3e-27 94.6 0.2 2.4 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|383318764|ref|YP_005379605.1| - 1.7e-14 54.2 0.2 5.9e-14 52.5 0.2 2.0 1 0 0 1 1 1 1 CoA binding domain YIEGIA PF14045.6 gi|383318764|ref|YP_005379605.1| - 0.12 11.2 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 YIEGIA protein MS_channel PF00924.18 gi|383318765|ref|YP_005379606.1| - 9.7e-14 51.4 2.2 2.8e-13 49.9 2.2 1.7 1 1 0 1 1 1 1 Mechanosensitive ion channel ExoD PF06055.12 gi|383318765|ref|YP_005379606.1| - 0.019 14.3 2.7 0.029 13.8 2.7 1.2 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD DHFR_2 PF06442.11 gi|383318765|ref|YP_005379606.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 R67 dihydrofolate reductase Ham1p_like PF01725.16 gi|383318766|ref|YP_005379607.1| - 1.2e-46 159.1 0.0 1.3e-46 158.9 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Flavodoxin_1 PF00258.25 gi|383318767|ref|YP_005379608.1| - 2e-08 34.5 0.0 3.5e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 gi|383318767|ref|YP_005379608.1| - 5.3e-08 33.1 0.0 1.2e-07 32.0 0.0 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|383318767|ref|YP_005379608.1| - 0.00029 20.4 0.0 0.00056 19.5 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_5 PF12724.7 gi|383318767|ref|YP_005379608.1| - 0.0096 16.2 0.0 0.017 15.3 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain HEM4 PF02602.15 gi|383318768|ref|YP_005379609.1| - 2.2e-50 171.2 0.0 2.5e-50 171.0 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Nitro_FeMo-Co PF02579.17 gi|383318768|ref|YP_005379609.1| - 0.02 15.2 0.1 2.1 8.8 0.0 3.1 3 1 1 4 4 4 0 Dinitrogenase iron-molybdenum cofactor TP_methylase PF00590.20 gi|383318769|ref|YP_005379610.1| - 7.2e-53 179.7 0.4 8.2e-53 179.5 0.4 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Porphobil_deam PF01379.20 gi|383318770|ref|YP_005379611.1| - 4e-66 222.4 0.0 5.9e-66 221.9 0.0 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|383318770|ref|YP_005379611.1| - 1.9e-09 37.8 0.0 3.4e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.21 gi|383318771|ref|YP_005379612.1| - 2.9e-63 213.9 0.0 3.5e-63 213.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|383318771|ref|YP_005379612.1| - 0.015 14.5 0.0 0.032 13.4 0.0 1.5 1 1 0 1 1 1 0 Aminotransferase class I and II ALAD PF00490.21 gi|383318772|ref|YP_005379613.1| - 1.1e-141 471.6 0.7 1.2e-141 471.4 0.7 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Amdase PF17645.1 gi|383318772|ref|YP_005379613.1| - 0.061 12.9 0.1 0.99 9.0 0.0 2.3 2 0 0 2 2 2 0 Arylmalonate decarboxylase Shikimate_DH PF01488.20 gi|383318773|ref|YP_005379614.1| - 1.7e-39 135.0 0.2 3.2e-39 134.2 0.2 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|383318773|ref|YP_005379614.1| - 2.6e-35 121.3 0.1 4.8e-35 120.5 0.1 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|383318773|ref|YP_005379614.1| - 1.9e-18 66.7 0.9 6.5e-18 65.0 0.1 2.2 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|383318773|ref|YP_005379614.1| - 2.4e-05 24.8 0.2 7.7e-05 23.2 0.2 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Glu_dehyd_C PF16912.5 gi|383318773|ref|YP_005379614.1| - 0.00012 21.7 0.2 0.00022 20.8 0.2 1.5 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus NAD_binding_7 PF13241.6 gi|383318773|ref|YP_005379614.1| - 0.00037 20.9 0.2 0.0011 19.4 0.2 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|383318773|ref|YP_005379614.1| - 0.0017 17.8 0.1 0.0031 16.9 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|383318773|ref|YP_005379614.1| - 0.012 15.8 0.2 0.026 14.7 0.2 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|383318773|ref|YP_005379614.1| - 0.024 14.9 0.3 0.066 13.5 0.3 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain IlvN PF07991.12 gi|383318773|ref|YP_005379614.1| - 0.049 13.2 0.1 0.08 12.5 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|383318773|ref|YP_005379614.1| - 0.062 13.0 0.4 0.15 11.7 0.4 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|383318773|ref|YP_005379614.1| - 0.067 12.5 0.5 0.19 11.0 0.4 1.7 1 1 1 2 2 2 0 ThiF family Malic_M PF03949.15 gi|383318773|ref|YP_005379614.1| - 0.082 12.2 0.8 2.6 7.3 0.2 2.2 1 1 1 2 2 2 0 Malic enzyme, NAD binding domain TrkA_N PF02254.18 gi|383318773|ref|YP_005379614.1| - 0.1 12.8 1.6 1 9.6 0.1 2.7 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|383318774|ref|YP_005379615.1| - 2e-20 73.2 0.0 3.3e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|383318774|ref|YP_005379615.1| - 2.6e-07 30.0 0.0 5.3e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central Sacchrp_dh_NADP PF03435.18 gi|383318774|ref|YP_005379615.1| - 0.0016 18.7 0.5 0.0083 16.4 0.3 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|383318774|ref|YP_005379615.1| - 0.078 12.3 0.1 0.13 11.6 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|383318774|ref|YP_005379615.1| - 0.084 12.9 0.0 0.2 11.7 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|383318774|ref|YP_005379615.1| - 0.14 12.5 2.1 0.27 11.5 0.7 2.1 2 1 0 2 2 2 0 TrkA-N domain DUF4013 PF13197.6 gi|383318775|ref|YP_005379616.1| - 2.3e-26 92.6 23.1 2.3e-26 92.6 23.1 1.7 1 1 1 2 2 2 2 Protein of unknown function (DUF4013) Phage_holin_3_7 PF05449.11 gi|383318775|ref|YP_005379616.1| - 3.7 7.6 16.1 0.62 10.1 4.6 3.7 1 1 3 4 4 4 0 Putative 3TM holin, Phage_holin_3 Peptidase_M20 PF01546.28 gi|383318776|ref|YP_005379617.1| - 4.6e-35 121.2 0.1 5.8e-35 120.9 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|383318776|ref|YP_005379617.1| - 3.9e-19 68.6 0.1 7.8e-19 67.6 0.0 1.6 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|383318776|ref|YP_005379617.1| - 0.0014 18.4 0.0 0.0082 15.8 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|383318776|ref|YP_005379617.1| - 0.0031 16.6 0.0 0.073 12.1 0.0 2.7 3 0 0 3 3 3 1 M42 glutamyl aminopeptidase MoCF_biosynth PF00994.24 gi|383318777|ref|YP_005379618.1| - 1.5e-27 96.0 0.1 1.8e-27 95.8 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain WHIM1 PF15612.6 gi|383318777|ref|YP_005379618.1| - 0.069 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 WSTF, HB1, Itc1p, MBD9 motif 1 Fer4_10 PF13237.6 gi|383318778|ref|YP_005379619.1| - 1.4e-07 31.5 18.9 3.1e-07 30.4 18.8 1.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|383318778|ref|YP_005379619.1| - 1.1e-05 25.1 3.1 1.1e-05 25.1 3.1 3.5 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|383318778|ref|YP_005379619.1| - 0.0001 23.2 17.8 0.00053 20.9 17.8 2.1 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|383318778|ref|YP_005379619.1| - 0.0017 18.3 4.5 0.0017 18.3 4.5 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383318778|ref|YP_005379619.1| - 0.0049 17.4 18.7 0.0071 16.9 18.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383318778|ref|YP_005379619.1| - 0.026 14.7 4.5 0.026 14.7 4.5 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383318778|ref|YP_005379619.1| - 0.29 11.6 18.0 0.76 10.3 17.9 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383318778|ref|YP_005379619.1| - 4.2 7.6 20.9 0.095 12.8 4.4 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain GHMP_kinases_N PF00288.26 gi|383318779|ref|YP_005379620.1| - 3.7e-12 46.3 0.7 2.6e-11 43.6 0.4 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain PTP_N PF12453.8 gi|383318779|ref|YP_005379620.1| - 1.1 9.0 3.0 3.9 7.3 0.2 2.7 2 0 0 2 2 2 0 Protein tyrosine phosphatase N terminal CM_2 PF01817.21 gi|383318780|ref|YP_005379621.1| - 3.3e-14 53.0 5.8 3.8e-14 52.8 5.8 1.0 1 0 0 1 1 1 1 Chorismate mutase type II NRho PF16733.5 gi|383318780|ref|YP_005379621.1| - 0.08 13.0 0.4 0.1 12.7 0.4 1.3 1 0 0 1 1 1 0 Rhomboid N-terminal domain PDH PF02153.17 gi|383318781|ref|YP_005379622.1| - 1.7e-39 135.4 0.0 1.9e-39 135.2 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|383318781|ref|YP_005379622.1| - 3.4e-08 33.9 0.0 8.2e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|383318781|ref|YP_005379622.1| - 0.00019 21.7 0.0 0.00032 20.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|383318781|ref|YP_005379622.1| - 0.0013 18.4 0.3 0.045 13.4 0.2 2.5 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA adh_short PF00106.25 gi|383318781|ref|YP_005379622.1| - 0.1 12.0 0.1 0.21 11.0 0.1 1.5 1 0 0 1 1 1 0 short chain dehydrogenase 3HCDH_N PF02737.18 gi|383318781|ref|YP_005379622.1| - 0.11 12.4 0.2 0.43 10.4 0.2 2.0 1 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|383318781|ref|YP_005379622.1| - 0.12 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_dh_N PF08501.11 gi|383318782|ref|YP_005379623.1| - 1.4e-28 98.9 0.0 3.9e-28 97.5 0.0 1.8 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|383318782|ref|YP_005379623.1| - 1.6e-13 50.1 0.1 3.4e-13 49.1 0.1 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|383318782|ref|YP_005379623.1| - 1.6e-10 41.2 0.1 2.4e-10 40.6 0.1 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 gi|383318782|ref|YP_005379623.1| - 2.8e-06 26.7 0.1 0.0032 16.8 0.0 2.2 2 0 0 2 2 2 2 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AlaDh_PNT_C PF01262.21 gi|383318782|ref|YP_005379623.1| - 5.3e-06 25.9 1.5 7.9e-06 25.3 1.5 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|383318782|ref|YP_005379623.1| - 0.00052 20.3 0.5 0.0019 18.4 0.5 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|383318782|ref|YP_005379623.1| - 0.00092 19.7 0.2 0.002 18.7 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|383318782|ref|YP_005379623.1| - 0.00097 19.5 0.1 0.0015 18.9 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|383318782|ref|YP_005379623.1| - 0.0035 16.7 0.1 0.0068 15.8 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.25 gi|383318782|ref|YP_005379623.1| - 0.017 14.6 0.7 0.026 14.0 0.7 1.4 1 0 0 1 1 1 0 short chain dehydrogenase ApbA PF02558.16 gi|383318782|ref|YP_005379623.1| - 0.021 14.5 0.6 0.073 12.7 0.6 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Staph_opine_DH PF10100.9 gi|383318782|ref|YP_005379623.1| - 0.06 12.0 0.1 0.074 11.7 0.1 1.1 1 0 0 1 1 1 0 Staphylopine dehydrogenase SDH_sah PF01972.16 gi|383318783|ref|YP_005379624.1| - 1.4e-10 40.7 0.0 1.2e-06 27.8 0.0 2.2 2 0 0 2 2 2 2 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|383318783|ref|YP_005379624.1| - 0.0013 18.6 0.0 0.0033 17.3 0.0 1.6 2 0 0 2 2 2 1 Clp protease Mu-like_Com PF10122.9 gi|383318783|ref|YP_005379624.1| - 0.12 11.9 0.2 0.28 10.7 0.2 1.5 1 0 0 1 1 1 0 Mu-like prophage protein Com HsdM_N PF12161.8 gi|383318786|ref|YP_005379627.1| - 1e-12 48.9 0.0 1.2e-12 48.6 0.0 1.1 1 0 0 1 1 1 1 HsdM N-terminal domain DUF362 PF04015.12 gi|383318787|ref|YP_005379628.1| - 4.3e-34 118.6 0.0 5.5e-34 118.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_9 PF13187.6 gi|383318787|ref|YP_005379628.1| - 8.9e-07 29.0 21.9 5.9e-06 26.3 11.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383318787|ref|YP_005379628.1| - 2.4e-06 27.9 3.9 0.0058 17.0 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|383318787|ref|YP_005379628.1| - 2.7e-06 27.0 15.8 0.0012 18.6 3.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383318787|ref|YP_005379628.1| - 8e-06 26.4 12.7 0.00082 19.9 13.6 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383318787|ref|YP_005379628.1| - 2.7e-05 25.0 12.1 0.0022 18.9 2.0 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|383318787|ref|YP_005379628.1| - 4.1e-05 23.4 13.7 0.0079 16.2 3.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|383318787|ref|YP_005379628.1| - 4.2e-05 23.6 12.5 0.00016 21.7 12.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|383318787|ref|YP_005379628.1| - 0.00015 22.0 10.9 0.0026 17.9 11.1 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383318787|ref|YP_005379628.1| - 0.0012 18.8 16.7 0.15 12.2 4.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383318787|ref|YP_005379628.1| - 0.0022 18.1 10.5 0.0022 18.1 10.5 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383318787|ref|YP_005379628.1| - 0.0025 18.3 11.6 0.3 11.7 2.9 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|383318787|ref|YP_005379628.1| - 0.0039 18.0 16.9 0.3 12.1 4.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|383318787|ref|YP_005379628.1| - 0.066 13.8 2.5 0.066 13.8 2.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|383318787|ref|YP_005379628.1| - 0.54 10.8 12.2 3 8.5 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Put_DNA-bind_N PF06971.13 gi|383318789|ref|YP_005379630.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HEPN PF05168.14 gi|383318791|ref|YP_005379632.1| - 1.5e-09 38.0 1.0 1.9e-09 37.6 1.0 1.1 1 0 0 1 1 1 1 HEPN domain HEPN_SAV_6107 PF18726.1 gi|383318791|ref|YP_005379632.1| - 0.074 13.6 0.0 0.085 13.4 0.0 1.2 1 1 0 1 1 1 0 SAV_6107-like HEPN Ac110_PIF PF07280.11 gi|383318792|ref|YP_005379633.1| - 0.074 12.8 0.1 0.12 12.1 0.1 1.5 1 1 0 1 1 1 0 Per os infectivity factor AC110 Glyco_transf_4 PF13439.6 gi|383318793|ref|YP_005379634.1| - 3.3e-25 89.0 0.4 5.5e-25 88.3 0.4 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|383318793|ref|YP_005379634.1| - 4.2e-25 88.3 0.0 6.2e-25 87.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383318793|ref|YP_005379634.1| - 6.3e-21 75.2 0.0 1.1e-20 74.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|383318793|ref|YP_005379634.1| - 2.6e-20 73.5 0.1 4.7e-20 72.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|383318793|ref|YP_005379634.1| - 8.1e-17 61.7 0.1 3.7e-08 33.4 0.1 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|383318793|ref|YP_005379634.1| - 5.5e-09 36.2 0.0 9.8e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Peptidase_M29 PF02073.15 gi|383318794|ref|YP_005379635.1| - 1e-22 80.5 0.0 6.6e-22 77.9 0.0 2.1 1 1 0 1 1 1 1 Thermophilic metalloprotease (M29) AAA_2 PF07724.14 gi|383318795|ref|YP_005379636.1| - 1.3e-40 139.3 0.0 4.6e-38 131.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA PF00004.29 gi|383318795|ref|YP_005379636.1| - 1.2e-20 74.2 0.0 1.3e-11 45.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_9 PF17871.1 gi|383318795|ref|YP_005379636.1| - 3.2e-19 68.8 0.0 9.1e-19 67.3 0.0 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|383318795|ref|YP_005379636.1| - 7.7e-15 55.1 0.0 2.5e-09 37.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ClpB_D2-small PF10431.9 gi|383318795|ref|YP_005379636.1| - 1.1e-13 51.0 0.1 5.6e-13 48.8 0.0 2.2 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein AAA_16 PF13191.6 gi|383318795|ref|YP_005379636.1| - 1.6e-11 44.9 5.3 9e-06 26.2 0.1 5.0 4 1 1 5 5 5 2 AAA ATPase domain Sigma54_activat PF00158.26 gi|383318795|ref|YP_005379636.1| - 1.3e-05 25.0 0.0 0.065 12.9 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 gi|383318795|ref|YP_005379636.1| - 3.7e-05 24.0 4.4 0.73 10.1 0.3 4.8 5 1 0 5 5 4 2 AAA domain AAA_7 PF12775.7 gi|383318795|ref|YP_005379636.1| - 5.3e-05 22.8 0.0 0.045 13.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_25 PF13481.6 gi|383318795|ref|YP_005379636.1| - 0.00042 19.9 0.2 0.025 14.1 0.1 2.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|383318795|ref|YP_005379636.1| - 0.00069 20.2 0.1 0.48 11.0 0.0 2.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|383318795|ref|YP_005379636.1| - 0.00072 19.3 1.5 0.3 10.8 0.0 3.2 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|383318795|ref|YP_005379636.1| - 0.001 18.8 0.4 0.053 13.3 0.1 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.12 gi|383318795|ref|YP_005379636.1| - 0.0023 17.9 0.0 0.033 14.1 0.0 2.4 2 0 0 2 2 2 1 NACHT domain TniB PF05621.11 gi|383318795|ref|YP_005379636.1| - 0.0023 17.4 0.0 3.1 7.2 0.0 2.8 2 1 1 3 3 3 2 Bacterial TniB protein ATPase_2 PF01637.18 gi|383318795|ref|YP_005379636.1| - 0.0028 17.6 0.0 0.21 11.4 0.0 3.0 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|383318795|ref|YP_005379636.1| - 0.0031 16.8 0.0 0.31 10.3 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin ResIII PF04851.15 gi|383318795|ref|YP_005379636.1| - 0.0032 17.5 0.0 0.76 9.8 0.0 3.2 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit TsaE PF02367.17 gi|383318795|ref|YP_005379636.1| - 0.0074 16.3 0.2 2.4 8.1 0.1 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|383318795|ref|YP_005379636.1| - 0.0083 15.8 0.3 2.4 7.8 0.0 2.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_14 PF13173.6 gi|383318795|ref|YP_005379636.1| - 0.015 15.4 0.0 0.94 9.5 0.0 2.8 2 1 1 3 3 3 0 AAA domain RNA_helicase PF00910.22 gi|383318795|ref|YP_005379636.1| - 0.015 15.6 0.0 8.5 6.8 0.0 2.5 2 0 0 2 2 2 0 RNA helicase RsgA_GTPase PF03193.16 gi|383318795|ref|YP_005379636.1| - 0.018 15.0 0.0 1.1 9.2 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase Mg_chelatase PF01078.21 gi|383318795|ref|YP_005379636.1| - 0.02 14.3 0.8 15 4.9 0.0 3.6 3 1 1 4 4 3 0 Magnesium chelatase, subunit ChlI Clp_N PF02861.20 gi|383318795|ref|YP_005379636.1| - 0.026 14.7 2.4 0.91 9.7 0.0 2.9 2 1 0 2 2 2 0 Clp amino terminal domain, pathogenicity island component AAA_24 PF13479.6 gi|383318795|ref|YP_005379636.1| - 0.029 14.1 0.0 4.7 6.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|383318795|ref|YP_005379636.1| - 0.033 13.9 0.2 1.2 8.8 0.1 2.5 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|383318795|ref|YP_005379636.1| - 0.037 13.8 0.0 1.9 8.3 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF815 PF05673.13 gi|383318795|ref|YP_005379636.1| - 0.038 13.2 0.1 0.096 11.8 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_23 PF13476.6 gi|383318795|ref|YP_005379636.1| - 0.051 14.1 0.0 7.4 7.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|383318795|ref|YP_005379636.1| - 0.058 13.9 0.0 14 6.1 0.0 2.7 2 0 0 2 2 2 0 ABC transporter Roc PF08477.13 gi|383318795|ref|YP_005379636.1| - 0.09 13.0 0.0 1.6 9.0 0.0 2.7 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase AAA_28 PF13521.6 gi|383318795|ref|YP_005379636.1| - 0.1 12.8 0.0 31 4.8 0.0 3.0 2 0 0 2 2 2 0 AAA domain Torsin PF06309.11 gi|383318795|ref|YP_005379636.1| - 0.11 12.6 0.0 0.34 11.0 0.0 1.8 2 0 0 2 2 1 0 Torsin AAA_33 PF13671.6 gi|383318795|ref|YP_005379636.1| - 0.14 12.3 0.0 6.6 6.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_6 PF12774.7 gi|383318795|ref|YP_005379636.1| - 0.22 10.5 0.0 1.5 7.8 0.0 1.9 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region TPR_11 PF13414.6 gi|383318796|ref|YP_005379637.1| - 6e-46 153.9 17.2 2.9e-08 33.3 0.1 9.9 2 1 7 9 9 9 6 TPR repeat TPR_2 PF07719.17 gi|383318796|ref|YP_005379637.1| - 7.5e-40 131.8 19.5 3.7e-06 26.6 0.0 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_1 PF00515.28 gi|383318796|ref|YP_005379637.1| - 8.9e-39 129.8 11.5 6.6e-07 28.9 0.0 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat Pkinase PF00069.25 gi|383318796|ref|YP_005379637.1| - 8.8e-37 126.9 0.0 1.3e-36 126.4 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain TPR_17 PF13431.6 gi|383318796|ref|YP_005379637.1| - 2.3e-32 109.0 10.2 0.00034 20.8 0.2 8.5 8 1 0 8 8 8 6 Tetratricopeptide repeat Pkinase_Tyr PF07714.17 gi|383318796|ref|YP_005379637.1| - 1.5e-31 109.6 0.0 2.2e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase TPR_8 PF13181.6 gi|383318796|ref|YP_005379637.1| - 3.2e-31 104.9 2.8 0.001 19.1 0.0 8.3 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|383318796|ref|YP_005379637.1| - 1.1e-24 86.8 28.5 1.6e-10 41.4 1.4 5.6 2 2 3 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.6 gi|383318796|ref|YP_005379637.1| - 2.7e-21 75.6 27.1 6.9e-07 29.5 0.8 5.4 1 1 3 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|383318796|ref|YP_005379637.1| - 1.1e-17 63.2 29.1 0.003 18.3 0.4 8.5 2 1 6 8 8 8 7 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383318796|ref|YP_005379637.1| - 4.5e-17 60.8 18.6 0.026 14.6 0.0 8.5 6 1 2 8 8 8 5 Tetratricopeptide repeat TPR_10 PF13374.6 gi|383318796|ref|YP_005379637.1| - 1.7e-15 56.3 35.9 0.00043 20.0 0.3 7.6 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|383318796|ref|YP_005379637.1| - 2.4e-10 40.7 16.3 0.00038 20.9 0.3 4.9 3 1 3 6 6 6 4 Tetratricopeptide repeat TPR_15 PF13429.6 gi|383318796|ref|YP_005379637.1| - 6.9e-07 28.8 5.9 5.2e-06 25.9 1.4 3.2 2 1 2 4 4 4 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|383318796|ref|YP_005379637.1| - 1e-06 29.0 4.4 0.11 12.8 0.1 4.9 1 1 3 4 4 4 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|383318796|ref|YP_005379637.1| - 3e-06 26.9 0.4 0.054 12.9 0.5 2.4 1 1 1 2 2 2 2 MalT-like TPR region BTAD PF03704.17 gi|383318796|ref|YP_005379637.1| - 4.2e-06 27.3 22.1 0.0026 18.2 5.0 4.4 3 1 1 4 4 3 3 Bacterial transcriptional activator domain TPR_6 PF13174.6 gi|383318796|ref|YP_005379637.1| - 9.3e-06 26.0 12.4 0.83 10.4 0.2 7.5 8 0 0 8 8 8 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|383318796|ref|YP_005379637.1| - 1.1e-05 25.5 24.2 1.1 10.0 0.2 7.5 8 0 0 8 8 6 2 Tetratricopeptide repeat TPR_5 PF12688.7 gi|383318796|ref|YP_005379637.1| - 0.00011 22.4 6.6 0.053 13.8 0.3 4.2 1 1 1 3 3 3 2 Tetratrico peptide repeat ANAPC3 PF12895.7 gi|383318796|ref|YP_005379637.1| - 0.00025 21.2 0.4 1.2 9.4 0.1 3.4 1 1 2 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.18 gi|383318796|ref|YP_005379637.1| - 0.0021 18.1 2.3 0.66 10.1 0.1 4.7 4 1 0 4 4 4 1 MIT (microtubule interacting and transport) domain TPR_9 PF13371.6 gi|383318796|ref|YP_005379637.1| - 0.0082 16.3 21.0 0.027 14.6 0.8 5.2 2 1 3 5 5 5 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|383318796|ref|YP_005379637.1| - 0.0084 16.2 1.4 38 4.3 0.1 4.8 2 2 2 5 5 5 0 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|383318796|ref|YP_005379637.1| - 0.013 14.4 0.5 3.4 6.5 0.1 2.2 1 1 1 2 2 2 0 NMDA receptor-regulated protein 1 APH PF01636.23 gi|383318796|ref|YP_005379637.1| - 0.025 14.5 1.3 0.21 11.5 0.0 2.7 2 2 0 2 2 2 0 Phosphotransferase enzyme family Ribosomal_L15e PF00827.17 gi|383318797|ref|YP_005379638.1| - 9.6e-84 279.9 6.7 1.1e-83 279.7 6.7 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.17 gi|383318798|ref|YP_005379639.1| - 1.8e-35 121.8 0.1 2.1e-35 121.6 0.1 1.1 1 0 0 1 1 1 1 RNA binding Peptidase_S46 PF10459.9 gi|383318798|ref|YP_005379639.1| - 0.098 11.3 0.1 0.12 11.0 0.1 1.0 1 0 0 1 1 1 0 Peptidase S46 RNase_P_p30 PF01876.16 gi|383318799|ref|YP_005379640.1| - 1e-38 132.9 0.0 1.4e-38 132.6 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 Glycos_transf_2 PF00535.26 gi|383318800|ref|YP_005379641.1| - 6e-26 91.3 0.0 1.2e-25 90.3 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|383318800|ref|YP_005379641.1| - 1.7e-13 51.0 0.0 5.4e-13 49.4 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|383318800|ref|YP_005379641.1| - 9.8e-11 41.4 0.0 1.4e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|383318800|ref|YP_005379641.1| - 1.2e-10 41.4 0.1 2.2e-06 27.4 0.1 2.0 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|383318800|ref|YP_005379641.1| - 5.6e-09 36.2 0.0 8.6e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.14 gi|383318800|ref|YP_005379641.1| - 7.6e-06 25.5 0.0 1.6e-05 24.5 0.0 1.5 1 1 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.6 gi|383318800|ref|YP_005379641.1| - 0.0037 17.7 0.0 0.009 16.5 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 2 ApbE PF02424.15 gi|383318801|ref|YP_005379642.1| - 0.03 13.9 2.5 0.088 12.3 0.0 2.2 2 1 0 2 2 2 0 ApbE family Fer4 PF00037.27 gi|383318802|ref|YP_005379643.1| - 5.2e-18 64.0 15.4 3e-10 39.5 4.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383318802|ref|YP_005379643.1| - 5.4e-18 65.3 37.8 2e-10 41.1 14.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383318802|ref|YP_005379643.1| - 2.4e-14 52.7 15.9 1e-07 31.7 4.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|383318802|ref|YP_005379643.1| - 1.1e-11 44.8 7.7 3.3e-06 27.2 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383318802|ref|YP_005379643.1| - 4e-11 43.7 8.8 1.1e-05 26.2 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|383318802|ref|YP_005379643.1| - 5.9e-11 41.8 17.7 3.4e-06 26.8 4.1 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|383318802|ref|YP_005379643.1| - 7e-11 42.1 25.4 4.9e-08 33.0 14.1 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383318802|ref|YP_005379643.1| - 6e-10 39.1 9.9 6e-10 39.1 9.9 1.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383318802|ref|YP_005379643.1| - 2.7e-09 36.8 15.8 1.9e-05 24.8 3.5 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|383318802|ref|YP_005379643.1| - 7.1e-07 29.7 23.5 0.00018 22.2 8.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|383318802|ref|YP_005379643.1| - 2.2e-05 24.8 15.9 0.004 17.6 15.9 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain NIL PF09383.10 gi|383318802|ref|YP_005379643.1| - 2.8e-05 23.9 0.0 3.8e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 NIL domain Fer4_13 PF13370.6 gi|383318802|ref|YP_005379643.1| - 4.1e-05 24.0 11.9 0.0073 16.8 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|383318802|ref|YP_005379643.1| - 6.8e-05 23.0 12.4 0.00037 20.7 12.4 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383318802|ref|YP_005379643.1| - 0.00011 22.7 14.2 0.02 15.4 2.3 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|383318802|ref|YP_005379643.1| - 0.00044 21.0 11.5 0.025 15.4 1.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383318802|ref|YP_005379643.1| - 0.0015 19.2 12.8 0.19 12.5 1.2 3.2 2 1 1 3 3 3 2 4Fe-4S single cluster domain Trp_syntA PF00290.20 gi|383318802|ref|YP_005379643.1| - 0.096 11.5 0.2 0.11 11.4 0.2 1.1 1 0 0 1 1 1 0 Tryptophan synthase alpha chain ETF_QO PF05187.13 gi|383318802|ref|YP_005379643.1| - 1.7 8.8 7.7 0.47 10.6 1.1 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_19 PF06902.11 gi|383318802|ref|YP_005379643.1| - 2.6 8.2 13.2 3.5 7.8 3.9 3.1 1 1 1 2 2 2 0 Divergent 4Fe-4S mono-cluster HcyBio PF01837.16 gi|383318803|ref|YP_005379644.1| - 3.7e-147 489.7 1.0 4.6e-147 489.4 1.0 1.1 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|383318803|ref|YP_005379644.1| - 1.3e-23 83.1 5.8 2.3e-11 43.9 0.2 2.9 3 0 0 3 3 3 2 CBS domain FlgD_ig PF13860.6 gi|383318804|ref|YP_005379645.1| - 0.013 15.4 0.3 0.037 13.9 0.1 1.9 2 0 0 2 2 2 0 FlgD Ig-like domain TBP PF00352.21 gi|383318805|ref|YP_005379646.1| - 3.9e-59 196.6 0.0 2.2e-28 98.0 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|383318805|ref|YP_005379646.1| - 4.6e-07 29.9 0.0 0.02 15.0 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) T4bSS_IcmS PF12608.8 gi|383318805|ref|YP_005379646.1| - 0.0023 18.2 0.0 0.051 13.9 0.0 2.2 1 1 0 2 2 2 1 Type IVb secretion, IcmS, effector-recruitment DUF218 PF02698.17 gi|383318805|ref|YP_005379646.1| - 0.14 12.2 0.0 17 5.4 0.0 2.7 1 1 2 3 3 3 0 DUF218 domain Fer4 PF00037.27 gi|383318806|ref|YP_005379647.1| - 5e-19 67.3 17.6 1.6e-09 37.1 5.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383318806|ref|YP_005379647.1| - 7.8e-17 60.6 16.2 1.8e-08 34.1 4.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|383318806|ref|YP_005379647.1| - 1.5e-13 49.9 15.1 3.3e-07 30.0 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|383318806|ref|YP_005379647.1| - 3.8e-13 49.3 27.1 1.8e-09 37.6 15.3 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383318806|ref|YP_005379647.1| - 4.9e-12 45.8 27.0 7.4e-09 35.6 15.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383318806|ref|YP_005379647.1| - 1.2e-11 45.0 13.8 3.1e-11 43.7 14.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383318806|ref|YP_005379647.1| - 9.1e-11 42.5 13.3 2.5e-05 25.1 3.8 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|383318806|ref|YP_005379647.1| - 1.3e-10 41.2 13.7 2.3e-10 40.5 13.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383318806|ref|YP_005379647.1| - 3.9e-09 36.3 14.9 1.5e-05 25.1 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|383318806|ref|YP_005379647.1| - 1.3e-06 28.9 19.0 0.00082 19.9 4.8 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|383318806|ref|YP_005379647.1| - 4.9e-06 27.3 8.5 0.0021 18.9 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383318806|ref|YP_005379647.1| - 1.1e-05 25.8 24.4 0.0027 18.1 2.1 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|383318806|ref|YP_005379647.1| - 1.8e-05 25.3 19.2 0.009 16.9 5.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|383318806|ref|YP_005379647.1| - 3e-05 24.5 36.1 0.03 14.9 3.1 2.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383318806|ref|YP_005379647.1| - 4.6e-05 24.1 18.3 0.0062 17.2 4.5 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|383318806|ref|YP_005379647.1| - 0.0094 16.1 14.3 0.11 12.7 3.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain COX5B PF01215.19 gi|383318806|ref|YP_005379647.1| - 0.029 14.1 1.0 0.033 13.9 1.0 1.1 1 0 0 1 1 1 0 Cytochrome c oxidase subunit Vb MTHFR_C PF12225.8 gi|383318806|ref|YP_005379647.1| - 0.73 9.5 13.2 0.57 9.9 3.8 2.2 1 1 1 2 2 2 0 Methylene-tetrahydrofolate reductase C terminal Semialdhyde_dhC PF02774.18 gi|383318807|ref|YP_005379648.1| - 2.2e-41 141.9 0.0 3.3e-41 141.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|383318807|ref|YP_005379648.1| - 3.8e-34 117.7 0.0 8.3e-34 116.6 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DXP_reductoisom PF02670.16 gi|383318807|ref|YP_005379648.1| - 0.0084 16.8 0.0 0.016 16.0 0.0 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Gp_dh_C PF02800.20 gi|383318807|ref|YP_005379648.1| - 0.0085 15.7 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NAD_binding_10 PF13460.6 gi|383318807|ref|YP_005379648.1| - 0.014 15.3 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding DapB_N PF01113.20 gi|383318807|ref|YP_005379648.1| - 0.019 15.1 0.0 0.031 14.4 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|383318807|ref|YP_005379648.1| - 0.069 13.4 0.0 0.18 12.1 0.0 1.8 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain DUF5518 PF17647.1 gi|383318808|ref|YP_005379649.1| - 0.085 13.0 35.0 0.26 11.4 13.8 2.4 1 1 1 2 2 2 0 Family of unknown function (DUF5518) DUF5409 PF17421.2 gi|383318808|ref|YP_005379649.1| - 0.12 13.1 0.2 0.12 13.1 0.2 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF5409) MAF_flag10 PF01973.18 gi|383318809|ref|YP_005379650.1| - 2e-34 118.8 0.0 2.5e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|383318809|ref|YP_005379650.1| - 0.021 14.9 0.0 0.036 14.1 0.0 1.4 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain tRNA-synt_1 PF00133.22 gi|383318810|ref|YP_005379651.1| - 3.1e-191 636.7 0.2 1.6e-111 373.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|383318810|ref|YP_005379651.1| - 7.3e-34 116.9 0.2 1.8e-33 115.7 0.2 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|383318810|ref|YP_005379651.1| - 1.4e-25 89.9 0.5 6.8e-10 38.3 0.0 3.8 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|383318810|ref|YP_005379651.1| - 1e-06 28.4 0.0 3.5e-05 23.3 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|383318810|ref|YP_005379651.1| - 0.00052 19.0 0.0 0.0014 17.6 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (K) IBR PF01485.21 gi|383318810|ref|YP_005379651.1| - 1 9.7 4.2 0.98 9.7 0.0 2.8 3 0 0 3 3 3 0 IBR domain, a half RING-finger domain HTH_42 PF06224.12 gi|383318811|ref|YP_005379652.1| - 1.2e-41 143.3 0.7 1.4e-41 143.1 0.7 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|383318811|ref|YP_005379652.1| - 0.021 14.9 0.0 0.21 11.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3525 PF12039.8 gi|383318811|ref|YP_005379652.1| - 0.054 12.2 0.0 0.074 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3525) DUF3958 PF13125.6 gi|383318811|ref|YP_005379652.1| - 0.074 13.3 0.4 0.14 12.3 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3958) DUF2540 PF10802.8 gi|383318811|ref|YP_005379652.1| - 0.15 12.1 0.7 1.2 9.3 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2540) TPR_5 PF12688.7 gi|383318812|ref|YP_005379653.1| - 0.089 13.0 0.3 0.57 10.4 0.0 2.4 3 0 0 3 3 3 0 Tetratrico peptide repeat T2SSF PF00482.23 gi|383318812|ref|YP_005379653.1| - 1.4 8.9 17.6 0.46 10.4 1.5 3.6 3 1 0 3 3 3 0 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|383318813|ref|YP_005379654.1| - 7.9e-33 113.7 0.0 1.6e-32 112.6 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|383318813|ref|YP_005379654.1| - 0.00016 22.1 0.0 0.00038 20.9 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain Glyco_hydro_125 PF06824.11 gi|383318813|ref|YP_005379654.1| - 0.043 12.7 0.0 0.066 12.1 0.0 1.2 1 0 0 1 1 1 0 Metal-independent alpha-mannosidase (GH125) AAA_29 PF13555.6 gi|383318813|ref|YP_005379654.1| - 0.045 13.5 0.3 0.12 12.1 0.3 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|383318813|ref|YP_005379654.1| - 0.052 13.0 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region cobW PF02492.19 gi|383318813|ref|YP_005379654.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|383318813|ref|YP_005379654.1| - 0.12 12.6 0.0 0.3 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|383318813|ref|YP_005379654.1| - 0.19 10.9 0.0 0.47 9.6 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF815) TrwB_AAD_bind PF10412.9 gi|383318813|ref|YP_005379654.1| - 0.21 10.5 0.3 0.42 9.5 0.0 1.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DJ-1_PfpI PF01965.24 gi|383318814|ref|YP_005379655.1| - 6.5e-43 146.4 0.0 7.3e-43 146.2 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 gi|383318814|ref|YP_005379655.1| - 0.0032 17.1 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 C-terminal domain found in long catalases GATase_3 PF07685.14 gi|383318814|ref|YP_005379655.1| - 0.0046 16.6 0.0 0.0061 16.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|383318814|ref|YP_005379655.1| - 0.0047 16.7 0.0 0.0056 16.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DUF2958 PF11171.8 gi|383318814|ref|YP_005379655.1| - 0.043 14.1 0.0 0.065 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2958) ThiJ_like PF17124.5 gi|383318814|ref|YP_005379655.1| - 0.066 12.9 0.0 0.14 11.8 0.0 1.6 1 1 0 1 1 1 0 ThiJ/PfpI family-like GATase_5 PF13507.6 gi|383318814|ref|YP_005379655.1| - 0.08 12.0 0.0 0.31 10.1 0.0 1.9 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|383318814|ref|YP_005379655.1| - 0.2 11.5 0.0 0.27 11.1 0.0 1.2 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Pribosyltran PF00156.27 gi|383318815|ref|YP_005379656.1| - 4.6e-27 94.5 0.0 7.1e-27 93.9 0.0 1.3 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|383318815|ref|YP_005379656.1| - 0.0014 18.1 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Rsm22 PF09243.10 gi|383318815|ref|YP_005379656.1| - 0.0041 16.4 0.0 0.0055 16.0 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 PRTase_2 PF15609.6 gi|383318815|ref|YP_005379656.1| - 0.005 16.4 0.0 0.0079 15.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase AAA_18 PF13238.6 gi|383318815|ref|YP_005379656.1| - 0.058 13.9 0.0 0.084 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|383318816|ref|YP_005379657.1| - 3.1e-12 47.1 0.0 1.1e-09 38.8 0.0 2.2 1 1 1 2 2 2 2 Helicase HerA, central domain DUF853 PF05872.12 gi|383318816|ref|YP_005379657.1| - 3.7e-05 22.5 0.0 0.00015 20.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|383318816|ref|YP_005379657.1| - 0.00034 19.7 0.0 0.026 13.5 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.6 gi|383318816|ref|YP_005379657.1| - 0.0087 16.3 0.0 2.1 8.7 0.0 2.9 3 0 0 3 3 3 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|383318816|ref|YP_005379657.1| - 0.0092 15.4 0.1 1.1 8.5 0.0 2.4 2 1 0 2 2 2 1 FtsK/SpoIIIE family Zot PF05707.12 gi|383318816|ref|YP_005379657.1| - 0.01 15.5 0.0 0.096 12.3 0.0 2.1 1 1 0 2 2 2 0 Zonular occludens toxin (Zot) AAA PF00004.29 gi|383318816|ref|YP_005379657.1| - 0.046 14.1 0.0 7.3 7.0 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|383318816|ref|YP_005379657.1| - 0.13 11.2 0.1 0.95 8.3 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Peptidase_A24 PF01478.18 gi|383318817|ref|YP_005379658.1| - 5e-09 36.5 16.1 1.1e-08 35.5 16.1 1.6 1 1 0 1 1 1 1 Type IV leader peptidase family Gln-synt_C PF00120.24 gi|383318819|ref|YP_005379660.1| - 1.3e-139 465.0 0.0 1.6e-139 464.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|383318819|ref|YP_005379660.1| - 3.8e-33 113.1 0.0 6.5e-33 112.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|383318819|ref|YP_005379660.1| - 0.00024 20.9 0.0 0.0044 16.8 0.0 2.5 2 1 0 2 2 2 1 Glutamine synthetase N-terminal domain ADIP PF11559.8 gi|383318820|ref|YP_005379661.1| - 0.0004 20.5 4.2 0.0004 20.5 4.2 2.1 1 1 2 3 3 3 2 Afadin- and alpha -actinin-Binding DUF1043 PF06295.12 gi|383318820|ref|YP_005379661.1| - 0.00047 20.2 2.0 0.00047 20.2 2.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1043) Csm1_N PF18504.1 gi|383318820|ref|YP_005379661.1| - 0.0028 17.9 11.2 0.0091 16.3 2.7 3.2 1 1 1 2 2 2 1 Csm1 N-terminal domain RasGAP_C PF03836.15 gi|383318820|ref|YP_005379661.1| - 0.0093 16.1 2.0 0.0093 16.1 2.0 2.2 1 1 2 3 3 3 1 RasGAP C-terminus MbeD_MobD PF04899.12 gi|383318820|ref|YP_005379661.1| - 0.0096 16.0 2.1 0.025 14.7 1.6 2.2 1 1 0 1 1 1 1 MbeD/MobD like KASH_CCD PF14662.6 gi|383318820|ref|YP_005379661.1| - 0.011 15.5 12.3 0.016 15.1 12.3 1.2 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH SIKE PF05769.11 gi|383318820|ref|YP_005379661.1| - 0.014 15.3 10.7 0.1 12.5 1.1 2.2 1 1 1 2 2 2 0 SIKE family ATG16 PF08614.11 gi|383318820|ref|YP_005379661.1| - 0.018 15.3 17.9 0.011 15.9 16.4 1.4 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Fusion_gly PF00523.18 gi|383318820|ref|YP_005379661.1| - 0.02 13.1 0.2 0.032 12.5 0.2 1.3 1 0 0 1 1 1 0 Fusion glycoprotein F0 DUF3138 PF11336.8 gi|383318820|ref|YP_005379661.1| - 0.023 13.4 0.6 0.03 12.9 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) GAS PF13851.6 gi|383318820|ref|YP_005379661.1| - 0.032 13.6 13.5 0.059 12.7 13.1 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding SlyX PF04102.12 gi|383318820|ref|YP_005379661.1| - 0.065 13.9 4.2 0.2 12.3 2.7 2.4 1 1 1 2 2 2 0 SlyX Fez1 PF06818.15 gi|383318820|ref|YP_005379661.1| - 0.078 13.4 13.5 0.046 14.2 11.8 1.5 1 1 0 1 1 1 0 Fez1 AAA_13 PF13166.6 gi|383318820|ref|YP_005379661.1| - 0.11 11.1 10.2 0.14 10.7 10.2 1.2 1 0 0 1 1 1 0 AAA domain CENP-F_leu_zip PF10473.9 gi|383318820|ref|YP_005379661.1| - 0.15 12.0 18.8 0.12 12.4 7.2 2.4 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF948 PF06103.11 gi|383318820|ref|YP_005379661.1| - 0.21 11.9 0.8 0.56 10.5 0.2 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) SecD-TM1 PF13721.6 gi|383318820|ref|YP_005379661.1| - 0.26 11.8 4.3 5.1 7.6 0.3 2.3 1 1 1 2 2 2 0 SecD export protein N-terminal TM region APG6_N PF17675.1 gi|383318820|ref|YP_005379661.1| - 0.28 11.7 22.6 2 8.9 9.2 2.3 1 1 1 2 2 2 0 Apg6 coiled-coil region DUF4407 PF14362.6 gi|383318820|ref|YP_005379661.1| - 0.4 10.0 10.0 0.2 11.0 7.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) LPP PF04728.13 gi|383318820|ref|YP_005379661.1| - 0.63 10.5 7.7 0.42 11.0 1.0 2.9 2 1 0 2 2 2 0 Lipoprotein leucine-zipper DUF641 PF04859.12 gi|383318820|ref|YP_005379661.1| - 1 9.7 13.1 7.5 6.9 6.6 3.0 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) FAM76 PF16046.5 gi|383318820|ref|YP_005379661.1| - 1 8.6 9.0 1.4 8.2 9.0 1.3 1 0 0 1 1 1 0 FAM76 protein Spc7 PF08317.11 gi|383318820|ref|YP_005379661.1| - 1.3 7.8 17.8 0.38 9.6 12.3 1.8 1 1 1 2 2 2 0 Spc7 kinetochore protein DivIC PF04977.15 gi|383318820|ref|YP_005379661.1| - 1.4 8.8 15.8 0.94 9.3 2.2 3.3 1 1 2 3 3 3 0 Septum formation initiator DUF3450 PF11932.8 gi|383318820|ref|YP_005379661.1| - 1.6 8.0 11.3 0.78 9.0 7.9 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Anti-adapt_IraP PF10796.9 gi|383318820|ref|YP_005379661.1| - 1.6 9.4 8.5 7.6 7.2 7.1 2.6 1 1 0 1 1 1 0 Sigma-S stabilisation anti-adaptor protein FlaC_arch PF05377.11 gi|383318820|ref|YP_005379661.1| - 2.7 8.4 7.9 1.2 9.5 2.5 2.8 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) CRA PF06589.11 gi|383318820|ref|YP_005379661.1| - 4 7.6 10.4 0.67 10.1 3.6 2.4 1 1 0 2 2 2 0 Circumsporozoite-related antigen (CRA) Atg14 PF10186.9 gi|383318820|ref|YP_005379661.1| - 4.2 6.4 15.1 6.9 5.6 15.1 1.5 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 YabA PF06156.13 gi|383318820|ref|YP_005379661.1| - 5.2 7.8 12.4 1.9 9.2 1.6 2.6 1 1 1 2 2 2 0 Initiation control protein YabA FliD_N PF02465.18 gi|383318820|ref|YP_005379661.1| - 8.8 7.1 9.6 14 6.5 6.4 2.4 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 N-terminus IGPS PF00218.21 gi|383318821|ref|YP_005379662.1| - 2.1e-61 207.3 0.0 2.4e-61 207.1 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.20 gi|383318821|ref|YP_005379662.1| - 0.16 10.8 0.0 0.3 9.9 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Chorismate_bind PF00425.18 gi|383318822|ref|YP_005379663.1| - 2.3e-99 332.2 0.0 7.9e-98 327.1 0.0 2.1 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|383318822|ref|YP_005379663.1| - 1.4e-29 103.1 0.0 4.7e-28 98.2 0.0 2.7 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region DUF1398 PF07166.11 gi|383318822|ref|YP_005379663.1| - 0.15 12.1 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1398) GATase PF00117.28 gi|383318823|ref|YP_005379664.1| - 1.9e-51 174.6 0.0 2.3e-51 174.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|383318823|ref|YP_005379664.1| - 1.4e-12 47.9 0.4 1.3e-11 44.7 0.4 2.0 1 1 0 1 1 1 1 Peptidase C26 Glycos_transf_3 PF00591.21 gi|383318824|ref|YP_005379665.1| - 1.9e-98 329.1 1.2 1.9e-98 329.1 1.2 1.3 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|383318824|ref|YP_005379665.1| - 4.1e-19 68.2 3.9 4.8e-19 68.0 1.4 2.3 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.22 gi|383318825|ref|YP_005379666.1| - 3e-36 125.0 0.0 3.4e-36 124.8 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.17 gi|383318825|ref|YP_005379666.1| - 0.012 15.0 0.1 0.047 13.0 0.1 2.0 1 1 0 1 1 1 0 Thiamine monophosphate synthase QRPTase_C PF01729.19 gi|383318825|ref|YP_005379666.1| - 0.015 15.1 0.1 0.11 12.2 0.0 2.2 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.18 gi|383318825|ref|YP_005379666.1| - 0.11 11.5 1.0 1.1 8.2 0.4 2.2 2 1 0 2 2 2 0 FMN-dependent dehydrogenase TGT PF01702.18 gi|383318825|ref|YP_005379666.1| - 0.2 10.8 0.8 8.7 5.4 0.1 2.9 2 1 0 2 2 2 0 Queuine tRNA-ribosyltransferase PALP PF00291.25 gi|383318826|ref|YP_005379667.1| - 1.3e-48 165.9 1.1 1.5e-48 165.7 1.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.15 gi|383318826|ref|YP_005379667.1| - 0.15 11.9 0.1 0.24 11.2 0.1 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Trp_syntA PF00290.20 gi|383318827|ref|YP_005379668.1| - 7.2e-75 251.2 0.6 8.7e-75 250.9 0.6 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|383318827|ref|YP_005379668.1| - 0.00051 19.6 0.4 0.0016 17.9 0.3 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|383318827|ref|YP_005379668.1| - 0.0011 18.3 0.8 0.0019 17.5 0.8 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG HTH_24 PF13412.6 gi|383318828|ref|YP_005379669.1| - 1.3e-19 69.5 0.1 8e-10 38.1 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|383318828|ref|YP_005379669.1| - 1.2e-12 47.5 0.0 3.4e-06 26.9 0.0 2.6 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.10 gi|383318828|ref|YP_005379669.1| - 6.6e-08 32.2 0.0 0.01 15.6 0.0 2.6 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|383318828|ref|YP_005379669.1| - 8.1e-08 32.0 0.0 0.0015 18.4 0.0 2.8 3 0 0 3 3 3 2 MarR family TrmB PF01978.19 gi|383318828|ref|YP_005379669.1| - 9e-06 25.5 1.0 0.11 12.4 0.0 2.9 3 1 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|383318828|ref|YP_005379669.1| - 1.1e-05 25.2 0.0 0.014 15.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|383318828|ref|YP_005379669.1| - 1.4e-05 25.0 0.0 0.023 14.6 0.0 2.3 2 0 0 2 2 2 2 HTH domain FaeA PF04703.12 gi|383318828|ref|YP_005379669.1| - 4e-05 23.9 0.0 9.1e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 FaeA-like protein RP-C PF03428.13 gi|383318828|ref|YP_005379669.1| - 0.00026 20.7 0.0 0.053 13.2 0.0 2.2 2 0 0 2 2 2 1 Replication protein C N-terminal domain RPA_C PF08784.11 gi|383318828|ref|YP_005379669.1| - 0.00038 21.1 0.0 0.64 10.7 0.0 2.2 2 0 0 2 2 2 2 Replication protein A C terminal Mnd1 PF03962.15 gi|383318828|ref|YP_005379669.1| - 0.0066 16.7 0.0 0.26 11.6 0.0 2.6 2 1 0 2 2 2 1 Mnd1 HTH domain HTH_45 PF14947.6 gi|383318828|ref|YP_005379669.1| - 0.0094 15.9 0.1 0.24 11.4 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix TFIIE_alpha PF02002.17 gi|383318828|ref|YP_005379669.1| - 0.01 15.7 0.1 4 7.4 0.0 2.2 1 1 1 2 2 2 0 TFIIE alpha subunit HTH_20 PF12840.7 gi|383318828|ref|YP_005379669.1| - 0.012 15.7 0.0 0.052 13.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain RNA_pol_Rpc34 PF05158.12 gi|383318828|ref|YP_005379669.1| - 0.014 14.8 0.1 0.02 14.3 0.1 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_Crp_2 PF13545.6 gi|383318828|ref|YP_005379669.1| - 0.05 13.6 0.2 6.5 6.8 0.0 2.6 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_41 PF14502.6 gi|383318828|ref|YP_005379669.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Fae PF08714.11 gi|383318829|ref|YP_005379670.1| - 8.1e-71 237.1 0.2 1.6e-70 236.1 0.2 1.5 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|383318829|ref|YP_005379670.1| - 1.5e-20 73.8 2.8 3.1e-20 72.7 2.8 1.6 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|383318829|ref|YP_005379670.1| - 8.7e-05 22.0 0.7 0.0002 20.8 0.7 1.7 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 gi|383318829|ref|YP_005379670.1| - 0.0073 16.1 0.1 0.018 14.8 0.0 1.6 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain PcrB PF01884.17 gi|383318829|ref|YP_005379670.1| - 0.043 13.3 1.4 1.5 8.2 0.5 2.3 2 0 0 2 2 2 0 PcrB family TIM PF00121.18 gi|383318830|ref|YP_005379671.1| - 4.1e-09 36.2 0.0 6.4e-09 35.5 0.0 1.3 1 1 0 1 1 1 1 Triosephosphate isomerase NMO PF03060.15 gi|383318830|ref|YP_005379671.1| - 2.4e-05 23.9 0.1 3.5e-05 23.4 0.1 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|383318830|ref|YP_005379671.1| - 2.5e-05 23.7 0.3 3.9e-05 23.1 0.3 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|383318830|ref|YP_005379671.1| - 0.0075 15.3 0.4 0.011 14.7 0.4 1.2 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|383318830|ref|YP_005379671.1| - 0.036 13.5 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein IGPS PF00218.21 gi|383318830|ref|YP_005379671.1| - 0.17 11.0 0.0 0.24 10.5 0.0 1.3 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase YdjM PF04307.14 gi|383318831|ref|YP_005379672.1| - 9.4e-13 47.8 9.5 1.6e-12 47.1 9.5 1.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF2628 PF10947.8 gi|383318831|ref|YP_005379672.1| - 0.51 10.7 4.5 1.4 9.3 3.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2628) DeoC PF01791.9 gi|383318832|ref|YP_005379673.1| - 2.2e-36 125.7 0.0 2.6e-36 125.4 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase HrcA_DNA-bdg PF03444.15 gi|383318833|ref|YP_005379674.1| - 4.5e-36 122.4 0.1 9.4e-36 121.3 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|383318833|ref|YP_005379674.1| - 1.9e-23 82.7 5.1 2e-12 47.4 0.3 2.8 3 0 0 3 3 3 2 CBS domain Rrf2 PF02082.20 gi|383318833|ref|YP_005379674.1| - 2.6e-08 34.1 0.0 6e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|383318833|ref|YP_005379674.1| - 3.2e-08 33.4 0.0 6.3e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|383318833|ref|YP_005379674.1| - 0.00038 20.2 0.0 0.00086 19.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|383318833|ref|YP_005379674.1| - 0.00039 20.3 0.0 0.0024 17.7 0.0 2.3 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|383318833|ref|YP_005379674.1| - 0.00081 19.2 0.0 0.0034 17.2 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|383318833|ref|YP_005379674.1| - 0.0021 17.6 0.3 0.0069 15.9 0.3 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|383318833|ref|YP_005379674.1| - 0.0051 16.8 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|383318833|ref|YP_005379674.1| - 0.0088 15.8 0.5 0.054 13.3 0.1 2.4 3 0 0 3 3 3 1 LexA DNA binding domain HTH_5 PF01022.20 gi|383318833|ref|YP_005379674.1| - 0.12 12.3 0.0 0.33 10.8 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|383318833|ref|YP_005379674.1| - 0.12 12.6 0.0 0.52 10.6 0.0 2.1 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.12 gi|383318833|ref|YP_005379674.1| - 0.15 11.8 0.2 0.98 9.1 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 Amino_oxidase PF01593.24 gi|383318834|ref|YP_005379675.1| - 2.4e-15 56.8 0.0 1.8e-09 37.5 0.0 2.0 1 1 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|383318834|ref|YP_005379675.1| - 7.5e-09 35.7 0.1 2.1e-08 34.3 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|383318834|ref|YP_005379675.1| - 3.5e-06 26.8 0.5 0.0063 16.1 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|383318834|ref|YP_005379675.1| - 8.6e-06 25.2 1.1 0.11 11.7 0.0 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|383318834|ref|YP_005379675.1| - 0.0021 16.9 1.1 1.6 7.3 0.2 2.8 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|383318834|ref|YP_005379675.1| - 0.095 11.8 1.6 0.63 9.1 0.3 2.3 3 0 0 3 3 3 0 FAD binding domain FAD_binding_3 PF01494.19 gi|383318834|ref|YP_005379675.1| - 0.19 10.9 0.3 0.41 9.8 0.1 1.6 2 0 0 2 2 2 0 FAD binding domain Fer4 PF00037.27 gi|383318835|ref|YP_005379676.1| - 3.5e-08 32.9 17.6 9.1e-06 25.3 5.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383318835|ref|YP_005379676.1| - 5e-07 29.8 12.7 7.1e-05 22.9 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383318835|ref|YP_005379676.1| - 1.2e-06 28.4 15.1 4.5e-05 23.3 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|383318835|ref|YP_005379676.1| - 7.4e-06 26.0 28.5 0.001 19.2 16.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383318835|ref|YP_005379676.1| - 1e-05 26.0 15.5 0.0017 18.9 5.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383318835|ref|YP_005379676.1| - 3.2e-05 24.1 18.4 0.0013 19.1 3.9 2.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|383318835|ref|YP_005379676.1| - 5.4e-05 24.0 16.1 0.02 15.8 5.6 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|383318835|ref|YP_005379676.1| - 0.0005 20.1 17.2 0.0038 17.3 17.2 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383318835|ref|YP_005379676.1| - 0.0025 18.2 17.0 0.078 13.4 5.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383318835|ref|YP_005379676.1| - 0.0098 15.9 18.1 0.025 14.6 3.6 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|383318835|ref|YP_005379676.1| - 0.012 16.2 17.0 0.14 12.7 3.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|383318835|ref|YP_005379676.1| - 0.018 15.9 3.1 0.018 15.9 3.1 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|383318835|ref|YP_005379676.1| - 0.17 12.9 6.7 0.17 12.9 6.7 2.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|383318835|ref|YP_005379676.1| - 2.3 8.8 18.1 1.5 9.4 4.1 3.0 1 1 2 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|383318835|ref|YP_005379676.1| - 3.4 7.9 14.3 7.4 6.8 14.3 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain ATP-grasp PF02222.22 gi|383318836|ref|YP_005379677.1| - 2.6e-41 141.1 0.0 4.4e-41 140.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|383318836|ref|YP_005379677.1| - 2.7e-08 33.6 0.0 4.6e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|383318836|ref|YP_005379677.1| - 1.8e-05 24.4 0.0 3.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain 2-Hacid_dh_C PF02826.19 gi|383318836|ref|YP_005379677.1| - 0.0037 16.6 0.0 0.0069 15.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_4 PF13535.6 gi|383318836|ref|YP_005379677.1| - 0.0038 16.8 0.1 0.017 14.7 0.1 2.1 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|383318836|ref|YP_005379677.1| - 0.0078 15.5 0.1 0.02 14.1 0.1 1.6 1 1 0 1 1 1 1 Sugar-transfer associated ATP-grasp Epimerase PF01370.21 gi|383318836|ref|YP_005379677.1| - 0.034 13.6 0.0 0.055 12.9 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family LAL_C2 PF18603.1 gi|383318836|ref|YP_005379677.1| - 0.055 13.6 0.0 0.17 12.1 0.0 1.8 2 0 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 ATP-grasp_3 PF02655.14 gi|383318836|ref|YP_005379677.1| - 0.14 12.2 0.1 0.24 11.4 0.1 1.3 1 0 0 1 1 1 0 ATP-grasp domain WD40_alt PF14077.6 gi|383318836|ref|YP_005379677.1| - 0.19 11.6 0.1 0.39 10.6 0.1 1.4 1 0 0 1 1 1 0 Alternative WD40 repeat motif CarboxypepD_reg PF13620.6 gi|383318837|ref|YP_005379678.1| - 8.5e-05 22.8 3.0 0.00012 22.3 1.0 2.2 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|383318837|ref|YP_005379678.1| - 0.00076 19.4 2.4 0.0012 18.9 0.8 2.1 1 1 1 2 2 2 1 Bacterial Ig-like domain (group 1) DUF4307 PF14155.6 gi|383318837|ref|YP_005379678.1| - 0.01 15.7 0.9 0.014 15.2 0.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DUF1174 PF06671.11 gi|383318837|ref|YP_005379678.1| - 0.068 12.9 0.1 0.15 11.8 0.1 1.5 1 0 0 1 1 1 0 Repeat of unknown function (DUF1174) Invasin_D3 PF09134.10 gi|383318837|ref|YP_005379678.1| - 0.3 11.4 4.1 0.24 11.7 1.7 2.0 1 1 1 2 2 2 0 Invasin, domain 3 FliM PF02154.15 gi|383318838|ref|YP_005379679.1| - 0.02 14.8 0.4 0.026 14.4 0.4 1.1 1 0 0 1 1 1 0 Flagellar motor switch protein FliM DUF485 PF04341.12 gi|383318838|ref|YP_005379679.1| - 1.2 9.1 8.0 0.26 11.2 4.1 1.7 1 1 1 2 2 2 0 Protein of unknown function, DUF485 Response_reg PF00072.24 gi|383318839|ref|YP_005379680.1| - 2e-13 50.5 0.0 3e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain DUF1829 PF08862.10 gi|383318841|ref|YP_005379682.1| - 4.1e-31 107.3 0.6 9.5e-31 106.1 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF1829 DUF1828 PF08861.10 gi|383318841|ref|YP_005379682.1| - 2.5e-25 88.6 0.1 4.4e-25 87.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF1828 GhoS PF11080.8 gi|383318841|ref|YP_005379682.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Endoribonuclease GhoS CBP4 PF07960.11 gi|383318842|ref|YP_005379683.1| - 0.0056 16.5 0.4 0.007 16.2 0.4 1.2 1 0 0 1 1 1 1 CBP4 GCR1_C PF12550.8 gi|383318842|ref|YP_005379683.1| - 0.022 15.1 0.8 0.22 11.9 0.4 2.2 2 0 0 2 2 2 0 Transcriptional activator of glycolytic enzymes DUF1542 PF07564.11 gi|383318842|ref|YP_005379683.1| - 0.11 12.7 0.6 0.11 12.7 0.6 1.8 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1542) DUF349 PF03993.12 gi|383318842|ref|YP_005379683.1| - 0.14 12.5 6.9 0.32 11.3 2.0 2.4 1 1 1 2 2 2 0 Domain of Unknown Function (DUF349) HEPN PF05168.14 gi|383318843|ref|YP_005379684.1| - 4.4e-05 23.6 0.5 4.6e-05 23.5 0.5 1.0 1 0 0 1 1 1 1 HEPN domain DUF553 PF04473.12 gi|383318844|ref|YP_005379685.1| - 0.00029 20.4 0.0 0.0005 19.6 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like domain Cellulase PF00150.18 gi|383318845|ref|YP_005379686.1| - 0.0028 17.1 0.5 0.0055 16.2 0.5 1.5 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) DUF4038 PF13204.6 gi|383318845|ref|YP_005379686.1| - 0.0029 17.3 2.8 0.01 15.5 0.2 2.1 1 1 0 2 2 2 1 Protein of unknown function (DUF4038) Glyco_hydro_53 PF07745.13 gi|383318845|ref|YP_005379686.1| - 0.0043 16.1 0.0 0.011 14.7 0.0 1.6 2 0 0 2 2 2 1 Glycosyl hydrolase family 53 NTP_transf_2 PF01909.23 gi|383318846|ref|YP_005379687.1| - 1.5e-10 41.2 0.1 3.3e-10 40.1 0.1 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|383318846|ref|YP_005379687.1| - 5.9e-10 39.1 0.1 1.7e-09 37.6 0.1 1.8 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MarR_2 PF12802.7 gi|383318846|ref|YP_005379687.1| - 4.7e-06 26.4 0.0 1.1e-05 25.2 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_24 PF13412.6 gi|383318846|ref|YP_005379687.1| - 0.00032 20.2 0.0 0.00071 19.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|383318846|ref|YP_005379687.1| - 0.00088 19.2 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|383318846|ref|YP_005379687.1| - 0.0012 19.0 0.1 0.0021 18.2 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|383318846|ref|YP_005379687.1| - 0.0037 17.3 0.0 0.0066 16.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix FeoC PF09012.10 gi|383318846|ref|YP_005379687.1| - 0.038 14.1 0.0 0.063 13.4 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator Adenyl_cycl_N PF12633.7 gi|383318846|ref|YP_005379687.1| - 0.049 13.5 0.0 0.056 13.3 0.0 1.3 1 0 0 1 1 1 0 Adenylate cyclase NT domain MarR PF01047.22 gi|383318846|ref|YP_005379687.1| - 0.051 13.5 0.0 0.095 12.6 0.0 1.4 1 0 0 1 1 1 0 MarR family CtsR PF05848.11 gi|383318846|ref|YP_005379687.1| - 0.077 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 CtsR N-terminal HTH domain Penicillinase_R PF03965.16 gi|383318846|ref|YP_005379687.1| - 0.093 13.1 0.1 0.2 12.0 0.0 1.6 2 0 0 2 2 2 0 Penicillinase repressor HTH_54 PF18607.1 gi|383318846|ref|YP_005379687.1| - 0.1 12.7 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 ParA helix turn helix domain HmuY PF14064.6 gi|383318846|ref|YP_005379687.1| - 0.13 12.5 0.2 0.3 11.3 0.1 1.6 2 0 0 2 2 2 0 HmuY protein DUF4258 PF14076.6 gi|383318847|ref|YP_005379688.1| - 0.016 15.6 0.1 0.016 15.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4258) zf-C2H2_9 PF16293.5 gi|383318848|ref|YP_005379689.1| - 0.00082 19.2 0.1 0.52 10.2 0.0 2.3 2 0 0 2 2 2 2 C2H2 type zinc-finger (1 copy) DZR PF12773.7 gi|383318848|ref|YP_005379689.1| - 0.0057 16.6 0.2 0.0072 16.3 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon YdjO PF14169.6 gi|383318848|ref|YP_005379689.1| - 0.0058 16.3 5.0 0.012 15.4 0.9 2.3 2 1 0 2 2 2 1 Cold-inducible protein YdjO zf-TFIIB PF13453.6 gi|383318848|ref|YP_005379689.1| - 0.0099 15.2 4.3 0.028 13.8 4.3 1.8 1 1 0 1 1 1 1 Transcription factor zinc-finger zf-Di19 PF05605.12 gi|383318848|ref|YP_005379689.1| - 0.024 14.9 0.3 6.5 7.1 0.0 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.6 gi|383318848|ref|YP_005379689.1| - 0.094 13.6 0.2 18 6.5 0.0 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zinc-ribbons_6 PF07191.12 gi|383318848|ref|YP_005379689.1| - 0.18 11.8 1.8 0.74 9.8 1.8 1.8 1 1 0 1 1 1 0 zinc-ribbons Auto_anti-p27 PF06677.12 gi|383318848|ref|YP_005379689.1| - 3.1 8.0 6.4 18 5.6 6.4 2.0 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rad50_zn_hook PF04423.14 gi|383318848|ref|YP_005379689.1| - 3.5 7.6 6.5 3.7 7.5 0.5 2.3 2 1 0 2 2 2 0 Rad50 zinc hook motif GATase_4 PF13230.6 gi|383318849|ref|YP_005379690.1| - 8.1e-81 270.9 0.0 9e-81 270.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|383318849|ref|YP_005379690.1| - 8.7e-10 38.9 0.0 3e-08 33.9 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain ACCA PF03255.14 gi|383318849|ref|YP_005379690.1| - 0.027 14.3 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1759 PF03564.15 gi|383318849|ref|YP_005379690.1| - 0.098 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1759) NTP_transf_2 PF01909.23 gi|383318850|ref|YP_005379691.1| - 0.065 13.5 0.2 0.33 11.3 0.1 2.2 2 1 0 2 2 2 0 Nucleotidyltransferase domain AHJR-like PF18743.1 gi|383318851|ref|YP_005379692.1| - 0.0015 18.1 0.0 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 REase_AHJR-like PriA_C PF18074.1 gi|383318851|ref|YP_005379692.1| - 0.12 13.2 0.0 0.29 12.0 0.0 1.6 1 0 0 1 1 1 0 Primosomal protein N C-terminal domain zf_UBZ PF18439.1 gi|383318852|ref|YP_005379693.1| - 0.019 14.6 0.1 0.039 13.6 0.1 1.6 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger DUF2225 PF09986.9 gi|383318852|ref|YP_005379693.1| - 0.033 13.9 2.6 0.052 13.3 0.0 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-Di19 PF05605.12 gi|383318852|ref|YP_005379693.1| - 0.058 13.7 0.1 0.1 12.9 0.1 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding FYDLN_acid PF09538.10 gi|383318852|ref|YP_005379693.1| - 0.071 13.8 7.3 0.69 10.6 7.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) ARGLU PF15346.6 gi|383318852|ref|YP_005379693.1| - 0.11 12.3 28.0 0.16 11.8 28.0 1.3 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 zf-CRD PF17979.1 gi|383318852|ref|YP_005379693.1| - 0.13 12.3 4.8 0.22 11.6 4.8 1.4 1 1 0 1 1 1 0 Cysteine rich domain with multizinc binding regions zinc_ribbon_9 PF14369.6 gi|383318852|ref|YP_005379693.1| - 0.16 12.2 0.2 0.3 11.4 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon Glu_synthase PF01645.17 gi|383318852|ref|YP_005379693.1| - 1.4 7.9 4.4 1.8 7.6 4.4 1.1 1 0 0 1 1 1 0 Conserved region in glutamate synthase DUF4239 PF14023.6 gi|383318852|ref|YP_005379693.1| - 2.5 7.8 4.6 2.9 7.5 4.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) Peptidase_S49_N PF08496.10 gi|383318852|ref|YP_005379693.1| - 3.6 7.6 11.6 3.5 7.7 10.8 1.4 1 1 0 1 1 1 0 Peptidase family S49 N-terminal Exonuc_VII_L PF02601.15 gi|383318852|ref|YP_005379693.1| - 3.8 7.0 13.3 4.4 6.8 13.3 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit CpXC PF14353.6 gi|383318852|ref|YP_005379693.1| - 4.4 7.4 8.7 23 5.0 8.7 2.1 1 1 0 1 1 1 0 CpXC protein AAA_11 PF13086.6 gi|383318852|ref|YP_005379693.1| - 6.6 6.4 13.5 8.1 6.1 13.5 1.1 1 0 0 1 1 1 0 AAA domain DUF2130 PF09903.9 gi|383318853|ref|YP_005379694.1| - 3.6e-44 151.0 0.0 4.2e-44 150.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2130) YscO-like PF16789.5 gi|383318853|ref|YP_005379694.1| - 0.0022 18.0 0.3 0.0039 17.2 0.3 1.3 1 0 0 1 1 1 1 YscO-like protein Herpes_UL14 PF03580.14 gi|383318853|ref|YP_005379694.1| - 0.014 15.6 0.1 0.018 15.3 0.1 1.2 1 0 0 1 1 1 0 Herpesvirus UL14-like protein RusA PF05866.11 gi|383318853|ref|YP_005379694.1| - 0.17 12.4 0.1 0.6 10.7 0.3 1.7 2 0 0 2 2 2 0 Endodeoxyribonuclease RusA HNH PF01844.23 gi|383318855|ref|YP_005379696.1| - 9.6e-08 32.1 1.0 6.1e-07 29.5 0.3 2.4 2 0 0 2 2 2 1 HNH endonuclease DUF3427 PF11907.8 gi|383318855|ref|YP_005379696.1| - 3.5e-07 29.8 6.0 4.4e-07 29.4 6.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3427) HNH_2 PF13391.6 gi|383318855|ref|YP_005379696.1| - 0.015 15.4 0.1 0.066 13.4 0.1 2.0 1 1 0 1 1 1 0 HNH endonuclease Vsr PF03852.15 gi|383318856|ref|YP_005379697.1| - 1.2e-22 79.5 0.0 1.8e-22 78.9 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch endonuclease Vsr MTES_1575 PF18741.1 gi|383318856|ref|YP_005379697.1| - 4.6e-08 33.1 0.8 9.2e-06 25.8 0.8 2.3 1 1 0 1 1 1 1 REase_MTES_1575 DUF559 PF04480.12 gi|383318856|ref|YP_005379697.1| - 4.5e-06 26.5 0.4 2.6e-05 24.0 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF559) DUF4420 PF14390.6 gi|383318857|ref|YP_005379698.1| - 8.7e-28 97.4 0.1 9.9e-28 97.3 0.1 1.0 1 0 0 1 1 1 1 Putative PD-(D/E)XK family member, (DUF4420) Z1 PF10593.9 gi|383318858|ref|YP_005379699.1| - 2.1e-44 151.8 0.1 2.9e-44 151.3 0.1 1.2 1 0 0 1 1 1 1 Z1 domain HATPase_c_3 PF13589.6 gi|383318859|ref|YP_005379700.1| - 5.1e-20 71.7 0.1 1.1e-19 70.6 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|383318859|ref|YP_005379700.1| - 0.038 14.5 0.1 0.093 13.2 0.1 1.7 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Pih1_fungal_CS PF18482.1 gi|383318859|ref|YP_005379700.1| - 0.15 12.6 1.0 1.2 9.7 0.2 2.4 2 0 0 2 2 2 0 Fungal Pih1 CS domain DNA_methylase PF00145.17 gi|383318860|ref|YP_005379701.1| - 1.3e-70 238.4 0.1 8.9e-70 235.7 0.1 1.8 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase HicB_lk_antitox PF15919.5 gi|383318861|ref|YP_005379702.1| - 1.2e-16 61.0 0.0 1.2e-16 61.0 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF5131 PF07505.11 gi|383318862|ref|YP_005379703.1| - 2e-92 309.1 0.1 2.2e-92 309.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF5131) DUF2976 PF11190.8 gi|383318865|ref|YP_005379706.1| - 0.054 13.3 0.1 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) N_BRCA1_IG PF16158.5 gi|383318866|ref|YP_005379707.1| - 5.7e-06 27.0 0.1 0.0035 18.0 0.0 2.6 2 0 0 2 2 2 2 Ig-like domain from next to BRCA1 gene Big_7 PF17957.1 gi|383318866|ref|YP_005379707.1| - 0.0038 17.9 0.7 0.098 13.4 0.1 3.1 3 0 0 3 3 3 1 Bacterial Ig domain CopC PF04234.12 gi|383318866|ref|YP_005379707.1| - 0.15 13.1 0.3 45 5.2 0.0 2.7 2 1 0 2 2 2 0 CopC domain Thioredoxin PF00085.20 gi|383318868|ref|YP_005379709.1| - 7.7e-28 96.5 0.0 8.6e-28 96.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|383318868|ref|YP_005379709.1| - 5.5e-08 33.2 0.1 7.7e-07 29.5 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|383318868|ref|YP_005379709.1| - 5.7e-06 26.6 0.0 0.00022 21.5 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|383318868|ref|YP_005379709.1| - 8.6e-06 25.6 0.0 9.2e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 gi|383318868|ref|YP_005379709.1| - 0.00014 21.3 0.0 0.00014 21.3 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Redoxin PF08534.10 gi|383318868|ref|YP_005379709.1| - 0.0007 19.3 0.0 0.00091 19.0 0.0 1.3 1 0 0 1 1 1 1 Redoxin Thioredoxin_3 PF13192.6 gi|383318868|ref|YP_005379709.1| - 0.0019 18.2 0.0 0.011 15.7 0.0 1.9 1 1 1 2 2 2 1 Thioredoxin domain TraF PF13728.6 gi|383318868|ref|YP_005379709.1| - 0.0064 16.3 0.0 0.0081 16.0 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein AhpC-TSA PF00578.21 gi|383318868|ref|YP_005379709.1| - 0.0076 16.2 0.0 0.012 15.5 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family TP6A_N PF04406.14 gi|383318869|ref|YP_005379710.1| - 1e-11 44.6 0.4 3.1e-11 43.1 0.4 1.8 1 1 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.11 gi|383318870|ref|YP_005379711.1| - 4.5e-51 172.8 0.0 7.5e-51 172.1 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|383318870|ref|YP_005379711.1| - 5.5e-12 46.2 0.0 3.3e-11 43.7 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|383318870|ref|YP_005379711.1| - 3.5e-07 30.1 0.0 6.2e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4290 PF14123.6 gi|383318870|ref|YP_005379711.1| - 0.11 12.1 0.1 0.19 11.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) Glycos_transf_1 PF00534.20 gi|383318871|ref|YP_005379712.1| - 1.9e-36 125.2 0.0 5.9e-36 123.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383318871|ref|YP_005379712.1| - 1.1e-30 106.8 1.3 1.9e-30 106.1 1.3 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|383318871|ref|YP_005379712.1| - 2.9e-29 102.2 0.2 2.1e-28 99.4 0.2 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|383318871|ref|YP_005379712.1| - 3.8e-18 66.4 1.4 3.8e-18 66.4 0.3 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|383318871|ref|YP_005379712.1| - 5.2e-09 36.3 0.0 9.5e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|383318871|ref|YP_005379712.1| - 1.1e-05 25.7 0.0 3e-05 24.3 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Amidase PF01425.21 gi|383318871|ref|YP_005379712.1| - 0.045 12.7 0.0 5.4 5.9 0.0 2.1 2 0 0 2 2 2 0 Amidase PAS_3 PF08447.12 gi|383318872|ref|YP_005379713.1| - 2.8e-110 360.8 14.0 1.8e-18 66.6 0.1 8.3 8 0 0 8 8 8 6 PAS fold PAS_9 PF13426.7 gi|383318872|ref|YP_005379713.1| - 3.1e-43 146.3 11.4 1.2e-07 31.9 0.0 7.5 7 0 0 7 7 7 7 PAS domain PAS PF00989.25 gi|383318872|ref|YP_005379713.1| - 4.3e-39 133.0 4.4 5.7e-06 26.3 0.0 8.5 7 2 0 7 7 7 6 PAS fold HATPase_c PF02518.26 gi|383318872|ref|YP_005379713.1| - 7.3e-28 97.3 0.0 2.2e-27 95.8 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|383318872|ref|YP_005379713.1| - 6.1e-26 90.8 0.0 0.008 16.4 0.0 8.1 7 1 0 7 7 7 7 PAS fold Cyclin_C PF02984.19 gi|383318872|ref|YP_005379713.1| - 1.1e-13 51.3 0.0 0.48 10.5 0.0 6.5 6 0 0 6 6 6 4 Cyclin, C-terminal domain HisKA PF00512.25 gi|383318872|ref|YP_005379713.1| - 1.4e-09 37.8 0.0 4.6e-09 36.2 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Sulfatase_C PF14707.6 gi|383318872|ref|YP_005379713.1| - 1.8e-09 38.4 0.0 24 5.7 0.0 6.6 6 0 0 6 6 6 0 C-terminal region of aryl-sulfatase PIN_2 PF10130.9 gi|383318872|ref|YP_005379713.1| - 3.4e-06 27.3 4.6 15 5.8 0.0 6.0 5 0 0 5 5 5 0 PIN domain BK_channel_a PF03493.18 gi|383318872|ref|YP_005379713.1| - 5e-06 26.6 0.5 6.5 7.0 0.0 4.7 4 0 0 4 4 4 1 Calcium-activated BK potassium channel alpha subunit dCache_1 PF02743.18 gi|383318872|ref|YP_005379713.1| - 7.9e-05 22.6 1.9 0.11 12.2 0.0 4.9 6 0 0 6 6 6 1 Cache domain HATPase_c_5 PF14501.6 gi|383318872|ref|YP_005379713.1| - 0.00033 20.5 0.2 0.0035 17.2 0.0 2.9 3 0 0 3 3 1 1 GHKL domain Aminotran_4 PF01063.19 gi|383318872|ref|YP_005379713.1| - 0.00062 19.7 2.0 16 5.2 0.0 5.2 6 0 0 6 6 6 0 Amino-transferase class IV Chitin_bind_4 PF00379.23 gi|383318872|ref|YP_005379713.1| - 0.004 17.6 0.8 1.7e+02 2.8 0.0 5.4 5 0 0 5 5 5 0 Insect cuticle protein SirA PF10747.9 gi|383318872|ref|YP_005379713.1| - 0.018 15.4 8.9 51 4.2 0.0 6.3 7 0 0 7 7 6 0 Sporulation inhibitor of replication protein SirA PAS_6 PF08348.11 gi|383318872|ref|YP_005379713.1| - 0.019 14.9 0.1 0.71 9.8 0.0 3.3 3 0 0 3 3 3 0 YheO-like PAS domain Tna_leader PF08053.11 gi|383318872|ref|YP_005379713.1| - 0.046 13.7 16.5 44 4.3 0.1 6.1 6 0 0 6 6 5 0 Tryptophanase operon leader peptide DUF2148 PF09918.9 gi|383318872|ref|YP_005379713.1| - 0.093 12.8 0.9 8.9 6.4 0.0 4.1 5 0 0 5 5 5 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) PAS_10 PF13596.6 gi|383318872|ref|YP_005379713.1| - 0.1 13.2 4.3 0.27 11.8 0.0 4.1 6 0 0 6 6 5 0 PAS domain EMA PF02488.15 gi|383318872|ref|YP_005379713.1| - 0.13 12.0 3.0 37 3.9 0.0 4.6 5 0 0 5 5 5 0 Merozoite Antigen Colicin-DNase PF12639.7 gi|383318872|ref|YP_005379713.1| - 1.4 9.8 3.8 2.5 9.0 1.2 2.8 2 0 0 2 2 1 0 DNase/tRNase domain of colicin-like bacteriocin PROCT PF08084.11 gi|383318872|ref|YP_005379713.1| - 2.8 7.9 4.7 77 3.2 0.0 3.8 4 0 0 4 4 4 0 PROCT (NUC072) domain RWD PF05773.22 gi|383318873|ref|YP_005379714.1| - 0.052 13.8 0.9 0.47 10.8 0.1 2.4 2 0 0 2 2 2 0 RWD domain Response_reg PF00072.24 gi|383318874|ref|YP_005379715.1| - 8.2e-20 71.1 0.1 1e-19 70.8 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Auto_anti-p27 PF06677.12 gi|383318875|ref|YP_005379716.1| - 1.2e-11 44.6 1.9 1.2e-11 44.6 1.9 1.6 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0147 PF03685.13 gi|383318876|ref|YP_005379717.1| - 2.6e-36 123.5 3.2 2.9e-36 123.3 3.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|383318876|ref|YP_005379717.1| - 0.036 14.3 0.2 3.1 8.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) RLAN PF14401.6 gi|383318877|ref|YP_005379718.1| - 3.1e-40 137.3 0.0 4.2e-40 136.9 0.0 1.0 1 0 0 1 1 1 1 RimK-like ATPgrasp N-terminal domain RimK PF08443.11 gi|383318878|ref|YP_005379719.1| - 6e-08 32.5 0.0 1.6e-07 31.1 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain R2K_2 PF18299.1 gi|383318878|ref|YP_005379719.1| - 0.0044 16.9 0.0 0.018 14.9 0.0 1.9 2 1 0 2 2 2 1 ATP-grasp domain, R2K clade family 2 Dala_Dala_lig_C PF07478.13 gi|383318878|ref|YP_005379719.1| - 0.0046 16.5 0.0 0.0072 15.9 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus R2K_3 PF14243.6 gi|383318878|ref|YP_005379719.1| - 0.075 13.0 0.0 0.16 11.9 0.0 1.5 1 1 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 DIX PF00778.17 gi|383318878|ref|YP_005379719.1| - 0.16 11.8 0.1 0.41 10.5 0.1 1.6 1 0 0 1 1 1 0 DIX domain Ribosomal_S19e PF01090.19 gi|383318879|ref|YP_005379720.1| - 1.5e-56 189.8 0.0 1.8e-56 189.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e Rrf2 PF02082.20 gi|383318879|ref|YP_005379720.1| - 0.038 14.3 0.1 0.11 12.9 0.1 1.7 2 0 0 2 2 2 0 Transcriptional regulator RuvB_C PF05491.13 gi|383318879|ref|YP_005379720.1| - 0.097 12.6 0.0 2.6 8.0 0.0 2.1 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain GntR PF00392.21 gi|383318879|ref|YP_005379720.1| - 0.13 12.0 0.1 0.32 10.7 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|383318879|ref|YP_005379720.1| - 0.17 11.8 0.0 0.39 10.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SatRNA_48 PF17485.2 gi|383318879|ref|YP_005379720.1| - 0.19 10.8 0.0 0.23 10.6 0.0 1.1 1 0 0 1 1 1 0 Satellite RNA 48 kDa protein dsDNA_bind PF01984.20 gi|383318880|ref|YP_005379721.1| - 3.7e-28 98.0 17.5 4.1e-28 97.9 17.5 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF4355 PF14265.6 gi|383318880|ref|YP_005379721.1| - 0.00051 20.3 5.8 0.0009 19.5 5.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4355) Med3 PF11593.8 gi|383318880|ref|YP_005379721.1| - 0.32 10.2 4.1 0.32 10.1 4.1 1.2 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal DUF4192 PF13830.6 gi|383318880|ref|YP_005379721.1| - 2.3 8.2 8.1 2.7 8.0 8.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4192) Asn_synthase PF00733.21 gi|383318881|ref|YP_005379722.1| - 0.0034 17.1 0.0 0.0051 16.5 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase Diphthami_syn_2 PF01902.17 gi|383318881|ref|YP_005379722.1| - 0.031 13.8 0.0 0.053 13.0 0.0 1.4 1 0 0 1 1 1 0 Diphthamide synthase tRNA_Me_trans PF03054.16 gi|383318881|ref|YP_005379722.1| - 0.089 11.6 0.0 0.22 10.3 0.0 1.7 1 1 0 1 1 1 0 tRNA methyl transferase QueC PF06508.13 gi|383318881|ref|YP_005379722.1| - 0.19 11.2 0.0 0.28 10.7 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Ribosomal_L39 PF00832.20 gi|383318882|ref|YP_005379723.1| - 6.4e-21 73.7 9.8 7.6e-21 73.5 9.8 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|383318883|ref|YP_005379724.1| - 7.3e-13 48.6 0.2 8.9e-13 48.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|383318884|ref|YP_005379725.1| - 7.6e-72 240.8 0.2 9.1e-72 240.6 0.2 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|383318885|ref|YP_005379726.1| - 2.2e-09 37.5 0.1 2.3e-09 37.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|383318886|ref|YP_005379727.1| - 3.5e-25 88.3 1.2 4.9e-25 87.8 1.2 1.2 1 0 0 1 1 1 1 Prefoldin subunit TRPM_tetra PF16519.5 gi|383318886|ref|YP_005379727.1| - 0.0084 16.2 1.3 0.014 15.4 1.3 1.4 1 0 0 1 1 1 1 Tetramerisation domain of TRPM Prefoldin_2 PF01920.20 gi|383318886|ref|YP_005379727.1| - 0.02 14.9 7.6 0.87 9.6 3.2 2.1 2 0 0 2 2 2 0 Prefoldin subunit DUF2205 PF10224.9 gi|383318886|ref|YP_005379727.1| - 1.2 9.2 9.1 2.3 8.2 2.6 2.4 2 0 0 2 2 2 0 Short coiled-coil protein CCDC-167 PF15188.6 gi|383318886|ref|YP_005379727.1| - 2.2 8.7 6.1 19 5.7 0.2 2.2 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 SRP54 PF00448.22 gi|383318887|ref|YP_005379728.1| - 4.8e-74 248.3 0.3 6.1e-74 247.9 0.3 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|383318887|ref|YP_005379728.1| - 5.4e-14 52.2 0.2 1.7e-13 50.6 0.2 1.9 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_17 PF13207.6 gi|383318887|ref|YP_005379728.1| - 3.4e-07 30.8 0.1 7.1e-07 29.7 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|383318887|ref|YP_005379728.1| - 3.9e-07 30.0 2.7 1e-06 28.6 2.7 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|383318887|ref|YP_005379728.1| - 3e-06 26.7 0.1 4.7e-06 26.0 0.1 1.2 1 0 0 1 1 1 1 Zeta toxin Thymidylate_kin PF02223.17 gi|383318887|ref|YP_005379728.1| - 8.3e-06 25.6 0.1 0.00065 19.4 0.1 2.3 2 0 0 2 2 2 1 Thymidylate kinase APS_kinase PF01583.20 gi|383318887|ref|YP_005379728.1| - 1.4e-05 25.1 0.0 2.3e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.6 gi|383318887|ref|YP_005379728.1| - 2.6e-05 24.7 0.2 5.7e-05 23.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 gi|383318887|ref|YP_005379728.1| - 7.9e-05 23.0 0.1 0.00013 22.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|383318887|ref|YP_005379728.1| - 0.0001 22.6 0.0 0.00017 21.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|383318887|ref|YP_005379728.1| - 0.00015 21.4 0.0 0.00022 20.8 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 DUF2075 PF09848.9 gi|383318887|ref|YP_005379728.1| - 0.00019 20.8 0.2 0.00028 20.2 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|383318887|ref|YP_005379728.1| - 0.00027 21.2 0.0 0.00056 20.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|383318887|ref|YP_005379728.1| - 0.00048 20.1 2.2 0.0022 17.9 2.2 2.1 1 1 0 1 1 1 1 NTPase CbiA PF01656.23 gi|383318887|ref|YP_005379728.1| - 0.00049 20.2 0.5 0.0016 18.5 0.5 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF853 PF05872.12 gi|383318887|ref|YP_005379728.1| - 0.00071 18.3 0.1 0.017 13.8 0.1 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) cobW PF02492.19 gi|383318887|ref|YP_005379728.1| - 0.00073 19.2 0.1 0.0013 18.3 0.1 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|383318887|ref|YP_005379728.1| - 0.00076 18.5 0.1 0.0013 17.8 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|383318887|ref|YP_005379728.1| - 0.002 18.3 0.0 0.0032 17.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|383318887|ref|YP_005379728.1| - 0.0022 18.4 0.9 0.012 16.0 0.9 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 gi|383318887|ref|YP_005379728.1| - 0.0022 18.0 0.2 0.0051 16.8 0.2 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Fe-ADH PF00465.19 gi|383318887|ref|YP_005379728.1| - 0.0067 15.3 0.7 0.064 12.1 0.1 2.1 1 1 2 3 3 3 2 Iron-containing alcohol dehydrogenase ATPase_2 PF01637.18 gi|383318887|ref|YP_005379728.1| - 0.01 15.8 0.1 0.017 15.0 0.1 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea LpxK PF02606.14 gi|383318887|ref|YP_005379728.1| - 0.01 14.9 0.2 0.01 14.9 0.2 1.5 2 0 0 2 2 1 0 Tetraacyldisaccharide-1-P 4'-kinase ABC_tran PF00005.27 gi|383318887|ref|YP_005379728.1| - 0.012 16.1 0.0 0.029 14.9 0.0 1.7 1 0 0 1 1 1 0 ABC transporter MobB PF03205.14 gi|383318887|ref|YP_005379728.1| - 0.014 15.2 1.5 0.027 14.4 0.4 1.9 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRPRB PF09439.10 gi|383318887|ref|YP_005379728.1| - 0.015 14.7 0.4 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit LytR_C PF13399.6 gi|383318887|ref|YP_005379728.1| - 0.021 15.8 0.3 0.061 14.3 0.2 1.8 1 1 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator KdpD PF02702.17 gi|383318887|ref|YP_005379728.1| - 0.023 14.2 0.2 0.038 13.5 0.2 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_7 PF12775.7 gi|383318887|ref|YP_005379728.1| - 0.031 13.8 0.1 0.056 13.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase PF06745.13 gi|383318887|ref|YP_005379728.1| - 0.031 13.6 0.1 0.053 12.9 0.1 1.3 1 0 0 1 1 1 0 KaiC PPK2 PF03976.14 gi|383318887|ref|YP_005379728.1| - 0.034 13.6 0.0 0.065 12.7 0.0 1.4 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) NACHT PF05729.12 gi|383318887|ref|YP_005379728.1| - 0.04 13.8 0.3 0.067 13.1 0.3 1.3 1 0 0 1 1 1 0 NACHT domain CLP1_P PF16575.5 gi|383318887|ref|YP_005379728.1| - 0.042 13.7 0.1 0.85 9.4 0.0 2.1 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop TPP_enzyme_M PF00205.22 gi|383318887|ref|YP_005379728.1| - 0.049 13.4 0.3 0.19 11.5 0.1 2.1 2 1 1 3 3 2 0 Thiamine pyrophosphate enzyme, central domain AAA_18 PF13238.6 gi|383318887|ref|YP_005379728.1| - 0.05 14.2 0.1 0.11 13.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain Helicase_RecD PF05127.14 gi|383318887|ref|YP_005379728.1| - 0.052 13.4 0.1 0.1 12.4 0.1 1.5 1 0 0 1 1 1 0 Helicase TrwB_AAD_bind PF10412.9 gi|383318887|ref|YP_005379728.1| - 0.077 11.9 0.1 0.15 10.9 0.1 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 gi|383318887|ref|YP_005379728.1| - 0.079 12.0 0.0 0.15 11.1 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.6 gi|383318887|ref|YP_005379728.1| - 0.08 13.4 0.0 0.14 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|383318887|ref|YP_005379728.1| - 0.082 12.6 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|383318887|ref|YP_005379728.1| - 0.083 12.8 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|383318887|ref|YP_005379728.1| - 0.091 12.8 1.3 0.52 10.4 1.3 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase ORC3_N PF07034.11 gi|383318887|ref|YP_005379728.1| - 0.17 11.0 0.0 0.21 10.6 0.0 1.1 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 3 N-terminus KAP_NTPase PF07693.14 gi|383318887|ref|YP_005379728.1| - 0.17 11.1 0.4 0.67 9.1 0.1 1.9 1 1 1 2 2 2 0 KAP family P-loop domain 6PF2K PF01591.18 gi|383318887|ref|YP_005379728.1| - 0.23 10.8 0.1 0.77 9.0 0.0 1.7 1 1 1 2 2 2 0 6-phosphofructo-2-kinase DUF1495 PF07381.11 gi|383318888|ref|YP_005379729.1| - 2.7e-09 36.7 0.1 5.2e-09 35.8 0.0 1.5 1 1 1 2 2 2 1 Winged helix DNA-binding domain (DUF1495) ABC2_membrane_2 PF12679.7 gi|383318889|ref|YP_005379730.1| - 1.2e-22 80.6 21.2 1.9e-22 79.9 21.2 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383318889|ref|YP_005379730.1| - 0.012 15.2 34.2 0.026 14.1 28.3 3.0 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383318889|ref|YP_005379730.1| - 1.9 7.5 37.9 0.052 12.6 30.6 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383318890|ref|YP_005379731.1| - 1.5e-14 54.0 17.7 3.1e-14 53.0 17.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383318890|ref|YP_005379731.1| - 3.3e-12 46.4 13.4 3.3e-12 46.4 13.4 2.5 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383318890|ref|YP_005379731.1| - 6.3e-08 32.8 16.9 1.9e-07 31.2 10.1 2.2 2 0 0 2 2 2 2 ABC-2 family transporter protein RCC1 PF00415.18 gi|383318891|ref|YP_005379732.1| - 6.3e-30 103.6 30.3 1.3e-09 38.6 0.7 6.2 6 1 0 6 6 6 5 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383318891|ref|YP_005379732.1| - 4.5e-27 93.2 30.2 6.3e-09 35.4 0.6 6.0 6 0 0 6 6 6 5 Regulator of chromosome condensation (RCC1) repeat TrbL PF04610.14 gi|383318892|ref|YP_005379733.1| - 0.0031 17.3 0.7 0.004 16.9 0.7 1.1 1 0 0 1 1 1 1 TrbL/VirB6 plasmid conjugal transfer protein RCC1 PF00415.18 gi|383318893|ref|YP_005379734.1| - 1.7e-29 102.1 28.1 6.7e-10 39.4 0.7 6.7 6 1 0 6 6 6 5 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383318893|ref|YP_005379734.1| - 1.9e-25 88.1 32.3 6.5e-09 35.4 0.6 5.8 6 0 0 6 6 6 5 Regulator of chromosome condensation (RCC1) repeat Imm27 PF15590.6 gi|383318893|ref|YP_005379734.1| - 0.42 10.4 2.8 16 5.4 2.5 3.0 1 1 1 2 2 2 0 Immunity protein 27 ABC2_membrane_2 PF12679.7 gi|383318894|ref|YP_005379735.1| - 4.2e-20 72.2 21.9 5.9e-20 71.7 21.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383318894|ref|YP_005379735.1| - 1.2e-06 28.7 17.9 1.2e-06 28.7 17.9 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383318894|ref|YP_005379735.1| - 0.0047 16.5 16.0 0.0047 16.5 16.0 2.8 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383318894|ref|YP_005379735.1| - 0.052 12.7 31.3 0.011 14.9 27.8 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|383318894|ref|YP_005379735.1| - 3 7.2 34.2 4.3 6.7 26.9 2.4 1 1 1 2 2 2 0 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|383318895|ref|YP_005379736.1| - 2.5e-14 53.3 17.6 8.7e-14 51.5 17.6 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383318895|ref|YP_005379736.1| - 7.9e-09 35.4 10.8 7.9e-09 35.4 10.8 2.0 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383318895|ref|YP_005379736.1| - 1.8e-08 34.5 12.6 1.8e-08 34.5 12.6 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383318895|ref|YP_005379736.1| - 0.00024 20.4 15.7 0.00024 20.4 15.7 2.1 3 0 0 3 3 3 1 ABC-2 family transporter protein Neur_chan_memb PF02932.16 gi|383318895|ref|YP_005379736.1| - 2.3 8.2 4.3 9.6 6.2 4.3 1.9 1 1 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Glyco_hydro_15 PF00723.21 gi|383318896|ref|YP_005379737.1| - 6.3e-10 38.4 0.0 1.8e-05 23.7 0.0 3.0 2 1 0 2 2 2 2 Glycosyl hydrolases family 15 Glyco_transf_36 PF06165.11 gi|383318896|ref|YP_005379737.1| - 0.00085 18.8 0.3 0.0018 17.7 0.3 1.5 1 1 0 1 1 1 1 Glycosyltransferase family 36 DNA_pol_E_B PF04042.16 gi|383318897|ref|YP_005379738.1| - 3.2e-14 52.8 0.0 4.9e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|383318897|ref|YP_005379738.1| - 2.3e-12 47.8 0.1 3.8e-12 47.1 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|383318897|ref|YP_005379738.1| - 2.8e-09 37.4 0.0 1.2e-08 35.3 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|383318897|ref|YP_005379738.1| - 4.1e-06 26.7 0.0 1.1e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain HalOD1 PF18545.1 gi|383318897|ref|YP_005379738.1| - 0.084 13.2 0.1 0.21 11.9 0.1 1.6 1 0 0 1 1 1 0 Halobacterial output domain 1 Peptidase_S24 PF00717.23 gi|383318898|ref|YP_005379739.1| - 0.004 17.1 0.1 0.0087 16.0 0.1 1.6 1 1 0 1 1 1 1 Peptidase S24-like OTCace_N PF02729.21 gi|383318899|ref|YP_005379740.1| - 1.1e-46 158.5 0.0 1.8e-46 157.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|383318899|ref|YP_005379740.1| - 1.2e-30 106.6 0.0 1.6e-30 106.2 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|383318900|ref|YP_005379741.1| - 5e-34 116.4 0.6 6.5e-34 116.1 0.6 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|383318900|ref|YP_005379741.1| - 5.3e-17 61.5 1.4 1e-16 60.5 1.4 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain YpmT PF17431.2 gi|383318900|ref|YP_005379741.1| - 0.15 12.1 0.0 0.29 11.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized YmpT-like HMG-CoA_red PF00368.18 gi|383318901|ref|YP_005379742.1| - 4.2e-128 427.4 0.2 4.9e-128 427.2 0.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase MHC_II_beta PF00969.19 gi|383318901|ref|YP_005379742.1| - 0.13 12.4 0.0 11 6.2 0.0 2.5 2 0 0 2 2 2 0 Class II histocompatibility antigen, beta domain Methyltransf_31 PF13847.6 gi|383318902|ref|YP_005379743.1| - 9.2e-15 54.7 0.0 1.3e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|383318902|ref|YP_005379743.1| - 1.4e-12 47.8 0.0 1.8e-11 44.2 0.0 1.9 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_25 PF13649.6 gi|383318902|ref|YP_005379743.1| - 1.2e-11 45.2 0.0 1.9e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383318902|ref|YP_005379743.1| - 1.5e-08 35.1 0.0 2.9e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|383318902|ref|YP_005379743.1| - 9.6e-08 32.0 0.1 1.3e-07 31.6 0.1 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|383318902|ref|YP_005379743.1| - 1.3e-07 31.4 0.0 1.6e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|383318902|ref|YP_005379743.1| - 1.6e-06 27.6 0.0 2.1e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 gi|383318902|ref|YP_005379743.1| - 3.8e-06 26.2 0.0 6e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|383318902|ref|YP_005379743.1| - 4e-06 26.8 0.0 6.6e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|383318902|ref|YP_005379743.1| - 6.1e-06 25.9 0.0 8.7e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|383318902|ref|YP_005379743.1| - 2.7e-05 24.9 0.0 6.9e-05 23.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|383318902|ref|YP_005379743.1| - 0.00054 20.9 0.0 0.0019 19.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383318902|ref|YP_005379743.1| - 0.0021 17.9 0.0 0.0071 16.2 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|383318902|ref|YP_005379743.1| - 0.0075 15.9 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 TrmK PF04816.12 gi|383318902|ref|YP_005379743.1| - 0.022 14.3 0.1 0.03 13.8 0.1 1.2 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase Methyltransf_32 PF13679.6 gi|383318902|ref|YP_005379743.1| - 0.031 14.3 0.0 0.047 13.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|383318902|ref|YP_005379743.1| - 0.044 13.2 0.0 0.63 9.5 0.0 2.0 2 0 0 2 2 2 0 Putative methyltransferase TehB PF03848.14 gi|383318902|ref|YP_005379743.1| - 0.19 11.1 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_15 PF09445.10 gi|383318902|ref|YP_005379743.1| - 0.2 11.2 0.0 0.29 10.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase NAC PF01849.18 gi|383318903|ref|YP_005379744.1| - 1.8e-14 53.4 0.2 3.3e-14 52.6 0.2 1.4 1 0 0 1 1 1 1 NAC domain DUF3867 PF12983.7 gi|383318903|ref|YP_005379744.1| - 0.0048 17.0 0.1 0.0058 16.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3867) CUE PF02845.16 gi|383318903|ref|YP_005379744.1| - 0.016 14.9 0.0 0.055 13.2 0.0 2.0 2 0 0 2 2 2 0 CUE domain DUF4158 PF13700.6 gi|383318903|ref|YP_005379744.1| - 0.058 13.2 0.0 0.076 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4158) Cdc6_C PF09079.11 gi|383318904|ref|YP_005379745.1| - 1.2e-24 86.1 0.6 2.6e-24 85.0 0.2 1.8 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|383318904|ref|YP_005379745.1| - 1e-11 45.2 0.0 3e-11 43.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|383318904|ref|YP_005379745.1| - 1.6e-10 41.5 0.0 3.8e-10 40.3 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|383318904|ref|YP_005379745.1| - 6.4e-08 33.2 0.4 6.1e-07 30.0 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|383318904|ref|YP_005379745.1| - 3.8e-07 29.7 0.0 8.8e-07 28.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|383318904|ref|YP_005379745.1| - 6.6e-05 22.9 0.0 0.00015 21.7 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_24 PF13479.6 gi|383318904|ref|YP_005379745.1| - 7.8e-05 22.5 0.1 0.00016 21.4 0.1 1.5 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|383318904|ref|YP_005379745.1| - 0.00011 22.3 2.0 0.00054 19.9 2.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DEAD PF00270.29 gi|383318904|ref|YP_005379745.1| - 0.00053 19.8 2.2 0.11 12.3 0.1 2.7 2 1 1 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|383318904|ref|YP_005379745.1| - 0.00092 19.3 0.2 0.0025 17.8 0.2 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit KAP_NTPase PF07693.14 gi|383318904|ref|YP_005379745.1| - 0.0019 17.5 2.1 0.86 8.8 0.0 2.3 1 1 0 2 2 2 2 KAP family P-loop domain Bac_DnaA PF00308.18 gi|383318904|ref|YP_005379745.1| - 0.002 18.0 0.8 0.015 15.1 0.6 2.1 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_18 PF13238.6 gi|383318904|ref|YP_005379745.1| - 0.0021 18.6 0.4 0.01 16.4 0.1 2.3 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|383318904|ref|YP_005379745.1| - 0.0023 17.1 0.0 0.0093 15.2 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) T2SSE PF00437.20 gi|383318904|ref|YP_005379745.1| - 0.0035 16.4 0.0 0.0072 15.4 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein Kinesin PF00225.23 gi|383318904|ref|YP_005379745.1| - 0.0054 15.7 0.0 0.0075 15.2 0.0 1.4 1 0 0 1 1 1 1 Kinesin motor domain AAA_25 PF13481.6 gi|383318904|ref|YP_005379745.1| - 0.006 16.2 0.0 0.031 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|383318904|ref|YP_005379745.1| - 0.0061 16.6 0.2 0.015 15.3 0.2 1.7 1 0 0 1 1 1 1 AAA domain Microtub_bd PF16796.5 gi|383318904|ref|YP_005379745.1| - 0.0089 16.0 0.1 0.031 14.2 0.0 2.0 2 0 0 2 2 2 1 Microtubule binding RuvB_N PF05496.12 gi|383318904|ref|YP_005379745.1| - 0.0098 15.7 0.1 0.21 11.3 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|383318904|ref|YP_005379745.1| - 0.012 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF1357 PF07094.11 gi|383318904|ref|YP_005379745.1| - 0.016 15.3 0.2 0.042 13.9 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1357) FtsK_SpoIIIE PF01580.18 gi|383318904|ref|YP_005379745.1| - 0.02 14.2 0.0 0.046 13.1 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Sigma54_activat PF00158.26 gi|383318904|ref|YP_005379745.1| - 0.023 14.4 0.1 0.083 12.6 0.1 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_2 PF07724.14 gi|383318904|ref|YP_005379745.1| - 0.043 13.9 2.1 1 9.5 2.1 2.6 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) DNA_pol3_delta2 PF13177.6 gi|383318904|ref|YP_005379745.1| - 0.046 13.5 0.2 0.27 11.0 0.1 2.0 2 0 0 2 2 2 0 DNA polymerase III, delta subunit AAA_19 PF13245.6 gi|383318904|ref|YP_005379745.1| - 0.054 13.8 0.2 0.15 12.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|383318904|ref|YP_005379745.1| - 0.057 13.0 0.1 0.49 10.0 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_assoc_2 PF16193.5 gi|383318904|ref|YP_005379745.1| - 0.058 13.7 0.1 0.17 12.2 0.1 1.8 1 0 0 1 1 1 0 AAA C-terminal domain AAA_5 PF07728.14 gi|383318904|ref|YP_005379745.1| - 0.065 13.2 0.2 0.19 11.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|383318904|ref|YP_005379745.1| - 0.083 12.2 0.2 0.45 9.8 0.1 2.1 1 1 1 2 2 2 0 Zeta toxin DUF2075 PF09848.9 gi|383318904|ref|YP_005379745.1| - 0.089 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AIG1 PF04548.16 gi|383318904|ref|YP_005379745.1| - 0.09 12.1 0.4 0.45 9.8 0.1 2.1 2 0 0 2 2 2 0 AIG1 family MutS_III PF05192.18 gi|383318904|ref|YP_005379745.1| - 0.091 13.0 0.9 0.18 12.0 0.4 1.9 1 1 1 2 2 2 0 MutS domain III PIF1 PF05970.14 gi|383318904|ref|YP_005379745.1| - 0.096 11.8 0.0 0.18 10.9 0.0 1.4 2 0 0 2 2 1 0 PIF1-like helicase Rad17 PF03215.15 gi|383318904|ref|YP_005379745.1| - 0.097 12.6 0.1 0.28 11.1 0.1 1.8 1 1 0 1 1 1 0 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|383318904|ref|YP_005379745.1| - 0.11 12.2 0.4 1.9 8.2 0.0 2.6 3 0 0 3 3 2 0 IstB-like ATP binding protein Fer4_NifH PF00142.18 gi|383318904|ref|YP_005379745.1| - 0.14 11.6 0.0 0.32 10.4 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF87 PF01935.17 gi|383318904|ref|YP_005379745.1| - 1 9.4 4.6 1.7 8.7 0.6 2.7 2 1 1 3 3 2 0 Helicase HerA, central domain AAA_23 PF13476.6 gi|383318904|ref|YP_005379745.1| - 2.5 8.6 8.4 0.43 11.0 2.8 2.4 2 1 0 2 2 1 0 AAA domain AhpC-TSA PF00578.21 gi|383318905|ref|YP_005379746.1| - 4.4e-24 84.8 0.0 5.1e-24 84.5 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|383318905|ref|YP_005379746.1| - 4.1e-14 52.5 0.0 4.8e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|383318905|ref|YP_005379746.1| - 0.00043 20.4 0.0 0.0046 17.1 0.0 1.9 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme Glycos_transf_1 PF00534.20 gi|383318906|ref|YP_005379747.1| - 1.3e-32 112.7 0.0 1.9e-31 108.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383318906|ref|YP_005379747.1| - 1.6e-26 93.3 0.1 1.7e-25 90.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383318906|ref|YP_005379747.1| - 1.8e-21 76.9 0.0 2.7e-21 76.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|383318906|ref|YP_005379747.1| - 1.6e-18 67.7 0.0 3e-18 66.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|383318906|ref|YP_005379747.1| - 1.4e-08 35.0 0.0 5.8e-08 33.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|383318907|ref|YP_005379748.1| - 2.6e-14 53.4 0.0 3.5e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|383318907|ref|YP_005379748.1| - 2.4e-06 27.6 0.0 3.1e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NanE PF04131.14 gi|383318907|ref|YP_005379748.1| - 0.015 14.5 0.1 0.046 12.9 0.1 1.8 1 1 1 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Ribosomal_S17e PF00833.18 gi|383318908|ref|YP_005379749.1| - 2.6e-11 43.5 0.0 2.8e-11 43.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 DHDPS PF00701.22 gi|383318909|ref|YP_005379750.1| - 2e-96 322.1 0.1 2.3e-96 321.9 0.1 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DapB_C PF05173.14 gi|383318910|ref|YP_005379751.1| - 5.6e-44 149.0 0.0 8.4e-44 148.5 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|383318910|ref|YP_005379751.1| - 2.5e-28 98.7 2.7 4.8e-28 97.8 2.7 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.16 gi|383318910|ref|YP_005379751.1| - 0.0069 17.0 0.7 0.019 15.6 0.2 2.0 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Peripla_BP_6 PF13458.6 gi|383318910|ref|YP_005379751.1| - 0.012 15.2 1.6 0.026 14.2 1.2 1.6 1 1 0 1 1 1 0 Periplasmic binding protein RmlD_sub_bind PF04321.17 gi|383318910|ref|YP_005379751.1| - 0.11 11.5 0.3 0.17 10.9 0.3 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain DUF4921 PF16268.5 gi|383318911|ref|YP_005379752.1| - 1.2e-13 50.6 0.0 2.1e-09 36.7 0.0 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF4921) GalP_UDP_transf PF01087.22 gi|383318911|ref|YP_005379752.1| - 3.2e-10 40.7 0.0 3e-07 31.0 0.0 2.2 2 0 0 2 2 2 2 Galactose-1-phosphate uridyl transferase, N-terminal domain DUF4931 PF16285.5 gi|383318911|ref|YP_005379752.1| - 1.2e-05 24.7 0.0 1.9e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4931) GalP_UDP_tr_C PF02744.17 gi|383318911|ref|YP_005379752.1| - 2.1e-05 24.3 0.0 3.6e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain HIT PF01230.23 gi|383318911|ref|YP_005379752.1| - 0.019 15.7 0.0 3.3 8.5 0.0 2.6 2 1 0 2 2 2 0 HIT domain PolC_DP2 PF03833.13 gi|383318912|ref|YP_005379753.1| - 0 1270.1 0.0 0 1268.9 0.0 1.5 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 CpXC PF14353.6 gi|383318912|ref|YP_005379753.1| - 0.5 10.4 5.4 92 3.1 0.0 4.3 4 0 0 4 4 4 0 CpXC protein DZR PF12773.7 gi|383318912|ref|YP_005379753.1| - 1.3 9.1 18.6 0.23 11.5 0.5 3.1 2 1 0 2 2 2 0 Double zinc ribbon Nop10p PF04135.12 gi|383318912|ref|YP_005379753.1| - 1.6 8.8 11.1 11 6.1 1.8 3.6 3 0 0 3 3 3 0 Nucleolar RNA-binding protein, Nop10p family HypA PF01155.19 gi|383318912|ref|YP_005379753.1| - 3.4 7.7 14.8 0.49 10.4 0.3 3.2 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRDD PF13597.6 gi|383318912|ref|YP_005379753.1| - 8.9 5.0 9.3 15 4.2 5.6 2.4 2 0 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase NiFe_hyd_SSU_C PF14720.6 gi|383318913|ref|YP_005379754.1| - 5.8e-27 93.9 1.8 5.8e-27 93.9 1.8 2.1 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 gi|383318913|ref|YP_005379754.1| - 9.2e-25 87.0 0.1 1.6e-24 86.2 0.1 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.9 gi|383318913|ref|YP_005379754.1| - 0.0005 19.8 5.0 0.0019 17.9 5.0 2.1 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|383318913|ref|YP_005379754.1| - 0.0042 16.4 0.5 0.013 14.8 0.5 1.9 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NiFeSe_Hases PF00374.19 gi|383318914|ref|YP_005379755.1| - 4.8e-74 250.1 0.0 3.3e-49 168.2 0.0 3.0 2 1 0 3 3 3 3 Nickel-dependent hydrogenase Ni_hydr_CYTB PF01292.20 gi|383318915|ref|YP_005379756.1| - 3.2e-14 52.9 13.4 4.6e-14 52.4 13.4 1.2 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.6 gi|383318915|ref|YP_005379756.1| - 0.00015 22.3 18.1 0.028 14.9 8.5 3.0 2 2 1 3 3 3 2 Domain of unknown function (DUF4405) NTP_transf_3 PF12804.7 gi|383318916|ref|YP_005379757.1| - 8.1e-36 123.8 0.2 9.9e-36 123.5 0.2 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|383318916|ref|YP_005379757.1| - 0.0014 18.6 0.0 0.002 18.1 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase CofC PF01983.16 gi|383318916|ref|YP_005379757.1| - 0.0028 16.9 0.0 0.0044 16.2 0.0 1.3 1 0 0 1 1 1 1 Guanylyl transferase CofC like DUF92 PF01940.16 gi|383318917|ref|YP_005379758.1| - 2.6e-55 187.4 15.2 2.6e-55 187.4 15.2 2.6 2 2 0 2 2 2 1 Integral membrane protein DUF92 DUF4328 PF14219.6 gi|383318917|ref|YP_005379758.1| - 0.012 15.1 0.2 0.089 12.3 0.2 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4328) Prenyltransf PF01255.19 gi|383318918|ref|YP_005379759.1| - 3e-31 108.7 0.0 3.5e-28 98.7 0.0 2.1 2 0 0 2 2 2 2 Putative undecaprenyl diphosphate synthase LPG_synthase_TM PF03706.13 gi|383318919|ref|YP_005379760.1| - 6.2e-39 134.3 35.2 7.7e-39 134.0 35.2 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DNase-RNase PF02577.14 gi|383318920|ref|YP_005379761.1| - 2.2e-42 143.8 1.2 2.4e-42 143.6 1.2 1.0 1 0 0 1 1 1 1 Bifunctional nuclease DUF4371 PF14291.6 gi|383318920|ref|YP_005379761.1| - 0.024 14.3 0.1 0.027 14.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4371) AP_endonuc_2 PF01261.24 gi|383318921|ref|YP_005379762.1| - 6.5e-25 87.8 0.0 8.7e-25 87.4 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Fer4_11 PF13247.6 gi|383318922|ref|YP_005379763.1| - 2.6e-15 56.4 22.6 1e-14 54.5 17.4 2.7 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383318922|ref|YP_005379763.1| - 1.7e-14 53.1 37.3 8.6e-06 25.6 1.2 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.27 gi|383318922|ref|YP_005379763.1| - 1.9e-10 40.1 39.6 4.1e-06 26.4 3.3 5.2 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383318922|ref|YP_005379763.1| - 2.1e-09 37.8 34.1 2.7e-06 27.9 12.6 3.5 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383318922|ref|YP_005379763.1| - 3.1e-09 36.8 35.0 0.00024 21.1 13.6 2.9 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383318922|ref|YP_005379763.1| - 4.1e-07 30.1 35.1 3.8e-05 23.8 12.4 3.1 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383318922|ref|YP_005379763.1| - 8.9e-07 28.6 9.6 0.00025 20.9 1.0 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|383318922|ref|YP_005379763.1| - 1.8e-05 24.9 34.2 0.0029 18.0 1.3 4.5 4 1 0 4 4 3 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|383318922|ref|YP_005379763.1| - 0.00013 22.7 46.8 0.022 15.6 3.0 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383318922|ref|YP_005379763.1| - 0.00052 20.1 35.0 0.0009 19.3 12.0 3.3 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383318922|ref|YP_005379763.1| - 0.0018 19.2 37.3 0.067 14.1 2.9 4.7 2 1 4 6 6 6 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|383318922|ref|YP_005379763.1| - 0.0052 17.5 23.9 0.11 13.2 6.2 3.6 2 2 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|383318922|ref|YP_005379763.1| - 0.0078 16.7 36.4 0.59 10.7 3.0 4.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383318922|ref|YP_005379763.1| - 0.034 14.7 2.5 0.034 14.7 2.5 4.0 3 1 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|383318922|ref|YP_005379763.1| - 0.33 11.4 34.3 0.48 10.9 1.8 4.0 3 1 0 3 3 3 0 4Fe-4S dicluster domain CCG PF02754.16 gi|383318924|ref|YP_005379765.1| - 6.8e-24 83.9 0.3 2.6e-11 43.6 0.1 2.2 2 0 0 2 2 2 2 Cysteine-rich domain E6 PF00518.17 gi|383318924|ref|YP_005379765.1| - 0.0027 18.1 0.3 0.57 10.7 0.0 2.2 2 0 0 2 2 2 2 Early Protein (E6) Bax1-I PF01027.20 gi|383318925|ref|YP_005379766.1| - 0.0026 17.6 4.0 0.0032 17.3 4.0 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 Complex1_49kDa PF00346.19 gi|383318926|ref|YP_005379767.1| - 1.4e-64 217.8 0.0 1.1e-46 159.2 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|383318926|ref|YP_005379767.1| - 8.9e-16 58.6 0.0 8.6e-15 55.4 0.0 2.2 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|383318926|ref|YP_005379767.1| - 8.5e-11 41.4 3.4 1.6e-09 37.2 0.1 3.3 4 0 0 4 4 4 2 Nickel-dependent hydrogenase NADHdh PF00146.21 gi|383318927|ref|YP_005379768.1| - 2.9e-55 187.7 22.7 3.6e-55 187.4 22.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|383318928|ref|YP_005379769.1| - 6.3e-11 41.6 22.0 3.8e-07 29.6 2.3 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383318928|ref|YP_005379769.1| - 9.7e-11 42.1 29.0 3e-09 37.3 9.9 3.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383318928|ref|YP_005379769.1| - 8.8e-10 38.6 7.9 8.8e-10 38.6 7.9 2.7 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383318928|ref|YP_005379769.1| - 2e-07 31.8 12.9 1.3e-05 26.0 0.9 3.1 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|383318928|ref|YP_005379769.1| - 3.3e-07 30.3 12.2 1.3e-06 28.4 6.2 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383318928|ref|YP_005379769.1| - 4.9e-07 29.8 11.1 4.9e-07 29.8 11.1 3.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383318928|ref|YP_005379769.1| - 9.3e-07 28.7 10.4 0.00038 20.4 1.3 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|383318928|ref|YP_005379769.1| - 0.00017 21.4 20.6 0.026 14.6 2.6 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|383318928|ref|YP_005379769.1| - 0.00033 21.1 19.4 0.28 11.7 2.2 3.3 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383318928|ref|YP_005379769.1| - 0.00043 21.0 12.5 0.051 14.3 0.9 2.9 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|383318928|ref|YP_005379769.1| - 0.00056 20.7 17.7 0.0046 17.8 4.2 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|383318928|ref|YP_005379769.1| - 0.00076 19.9 19.1 0.088 13.3 13.2 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|383318928|ref|YP_005379769.1| - 0.0028 18.5 13.9 0.052 14.4 0.3 3.1 3 1 0 3 3 3 2 4Fe-4S dicluster domain DZR PF12773.7 gi|383318928|ref|YP_005379769.1| - 0.2 11.7 11.5 11 6.1 5.0 3.2 1 1 1 2 2 2 0 Double zinc ribbon DUF2321 PF10083.9 gi|383318928|ref|YP_005379769.1| - 0.21 11.2 2.4 2.1 7.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Fer4_4 PF12800.7 gi|383318928|ref|YP_005379769.1| - 0.6 10.8 23.4 0.53 10.9 0.9 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|383318928|ref|YP_005379769.1| - 5.8 7.5 22.3 0.19 12.3 1.4 3.6 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Oxidored_q6 PF01058.22 gi|383318929|ref|YP_005379770.1| - 1.4e-27 96.1 0.3 1.7e-27 95.9 0.3 1.0 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit tRNA-synt_2c PF01411.19 gi|383318930|ref|YP_005379771.1| - 3.3e-79 266.9 0.0 4.8e-79 266.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|383318930|ref|YP_005379771.1| - 6.1e-12 45.4 0.2 1.4e-11 44.3 0.2 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|383318930|ref|YP_005379771.1| - 0.091 12.0 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 Glycyl-tRNA synthetase alpha subunit ADK_lid PF05191.14 gi|383318930|ref|YP_005379771.1| - 0.16 12.0 0.7 0.36 10.9 0.7 1.6 1 0 0 1 1 1 0 Adenylate kinase, active site lid Robl_LC7 PF03259.17 gi|383318931|ref|YP_005379772.1| - 2.4e-09 36.8 0.2 3.9e-09 36.2 0.2 1.4 1 0 0 1 1 1 1 Roadblock/LC7 domain GTP_EFTU_D2 PF03144.25 gi|383318932|ref|YP_005379773.1| - 3.9e-09 36.8 0.2 1.8e-08 34.6 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|383318932|ref|YP_005379773.1| - 0.0026 17.6 0.1 0.0053 16.6 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|383318932|ref|YP_005379773.1| - 0.014 14.9 0.0 1.6 8.2 0.0 2.2 1 1 1 2 2 2 0 Elongation factor Tu GTP binding domain AAA_28 PF13521.6 gi|383318932|ref|YP_005379773.1| - 0.025 14.8 0.2 0.043 14.1 0.2 1.3 1 0 0 1 1 1 0 AAA domain DUF3216 PF11505.8 gi|383318932|ref|YP_005379773.1| - 0.034 14.3 0.0 0.097 12.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3216) AAA_14 PF13173.6 gi|383318932|ref|YP_005379773.1| - 0.11 12.5 0.0 0.37 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|383318932|ref|YP_005379773.1| - 0.16 12.5 0.0 0.36 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|383318932|ref|YP_005379773.1| - 0.18 11.6 0.0 0.47 10.2 0.0 1.8 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation RNase_HII PF01351.18 gi|383318933|ref|YP_005379774.1| - 3.5e-49 167.3 0.0 4e-49 167.2 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII DUF2117 PF09890.9 gi|383318934|ref|YP_005379775.1| - 4.9e-46 156.9 0.0 6.6e-46 156.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) HhH-GPD PF00730.25 gi|383318935|ref|YP_005379776.1| - 1.3e-13 51.3 0.0 1.9e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|383318935|ref|YP_005379776.1| - 0.00017 21.3 0.0 0.00046 19.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF2400 PF09674.10 gi|383318935|ref|YP_005379776.1| - 0.088 12.8 0.0 0.29 11.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) HAD_2 PF13419.6 gi|383318936|ref|YP_005379777.1| - 7.8e-19 68.4 0.0 1.4e-18 67.6 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|383318936|ref|YP_005379777.1| - 1.1e-10 42.1 0.0 4.7e-10 40.1 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|383318936|ref|YP_005379777.1| - 2e-07 31.0 0.0 3.3e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|383318936|ref|YP_005379777.1| - 0.029 14.5 0.0 0.14 12.2 0.0 2.1 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Robl_LC7 PF03259.17 gi|383318937|ref|YP_005379778.1| - 0.045 13.5 0.0 0.094 12.5 0.0 1.5 1 0 0 1 1 1 0 Roadblock/LC7 domain LAMTOR5 PF16672.5 gi|383318937|ref|YP_005379778.1| - 0.12 12.3 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Ragulator complex protein LAMTOR5 Methyltransf_11 PF08241.12 gi|383318938|ref|YP_005379779.1| - 3.9e-21 75.5 0.2 7.5e-21 74.6 0.1 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383318938|ref|YP_005379779.1| - 2.4e-18 66.6 0.2 7.9e-18 65.0 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383318938|ref|YP_005379779.1| - 9.7e-17 61.3 0.0 1.3e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383318938|ref|YP_005379779.1| - 3.2e-12 46.5 0.0 1.1e-11 44.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|383318938|ref|YP_005379779.1| - 7.6e-12 45.8 0.0 1.4e-11 44.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|383318938|ref|YP_005379779.1| - 1.9e-07 30.9 0.0 2.3e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 gi|383318938|ref|YP_005379779.1| - 2.4e-06 27.0 0.0 8.3e-06 25.3 0.0 1.7 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|383318938|ref|YP_005379779.1| - 2.1e-05 24.5 0.0 4.5e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|383318938|ref|YP_005379779.1| - 5.6e-05 22.6 0.0 0.00013 21.4 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.11 gi|383318938|ref|YP_005379779.1| - 0.0021 17.7 0.0 0.0032 17.2 0.0 1.4 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.14 gi|383318938|ref|YP_005379779.1| - 0.017 14.5 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_9 PF08003.11 gi|383318938|ref|YP_005379779.1| - 0.018 14.0 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) MTS PF05175.14 gi|383318938|ref|YP_005379779.1| - 0.023 14.3 0.2 0.076 12.6 0.1 1.7 1 1 0 2 2 2 0 Methyltransferase small domain AdoMet_MTase PF07757.13 gi|383318938|ref|YP_005379779.1| - 0.037 14.4 0.0 0.075 13.4 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase PCMT PF01135.19 gi|383318938|ref|YP_005379779.1| - 0.045 13.5 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|383318938|ref|YP_005379779.1| - 0.095 12.8 0.1 0.43 10.7 0.1 2.1 1 1 0 1 1 1 0 FtsJ-like methyltransferase N6_N4_Mtase PF01555.18 gi|383318938|ref|YP_005379779.1| - 0.14 11.8 0.0 3.6 7.2 0.0 2.1 2 0 0 2 2 2 0 DNA methylase N2227 PF07942.12 gi|383318938|ref|YP_005379779.1| - 0.18 11.0 0.0 0.33 10.1 0.0 1.4 1 0 0 1 1 1 0 N2227-like protein Aldolase_II PF00596.21 gi|383318939|ref|YP_005379780.1| - 3e-34 118.6 0.0 3.3e-34 118.4 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain S4_2 PF13275.6 gi|383318940|ref|YP_005379781.1| - 0.1 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 S4 domain HTH_32 PF13565.6 gi|383318942|ref|YP_005379783.1| - 0.062 13.9 0.0 0.17 12.6 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Tmemb_161AB PF10268.9 gi|383318945|ref|YP_005379786.1| - 0.012 14.3 0.1 0.014 14.0 0.1 1.1 1 0 0 1 1 1 0 Predicted transmembrane protein 161AB DUF4926 PF16277.5 gi|383318945|ref|YP_005379786.1| - 0.037 13.4 0.0 0.063 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4926) PHA_gran_rgn PF09650.10 gi|383318945|ref|YP_005379786.1| - 0.15 12.4 0.0 4.2 7.7 0.0 2.1 2 0 0 2 2 2 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) DUF3040 PF11239.8 gi|383318946|ref|YP_005379787.1| - 0.0007 19.8 0.8 0.0011 19.2 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3040) TMEM238 PF15125.6 gi|383318946|ref|YP_005379787.1| - 0.16 12.2 1.8 0.31 11.3 1.8 1.4 1 0 0 1 1 1 0 TMEM238 protein family DUF2207 PF09972.9 gi|383318946|ref|YP_005379787.1| - 0.2 10.4 0.0 0.21 10.3 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Sugarporin_N PF11471.8 gi|383318946|ref|YP_005379787.1| - 0.5 10.4 4.1 0.84 9.6 0.4 3.0 4 0 0 4 4 4 0 Maltoporin periplasmic N-terminal extension TatC PF00902.18 gi|383318947|ref|YP_005379788.1| - 1.5e-46 158.9 20.1 1.7e-46 158.6 20.1 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Peptidase_M50 PF02163.22 gi|383318948|ref|YP_005379789.1| - 6.1e-11 42.1 4.0 5.4e-05 22.6 0.3 2.3 1 1 1 2 2 2 2 Peptidase family M50 P22_AR_C PF10548.9 gi|383318948|ref|YP_005379789.1| - 0.08 13.1 0.1 0.14 12.3 0.1 1.4 1 0 0 1 1 1 0 P22AR C-terminal domain GTP_EFTU PF00009.27 gi|383318949|ref|YP_005379790.1| - 4.5e-10 39.4 0.0 5.3e-09 35.9 0.0 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|383318949|ref|YP_005379790.1| - 1.2e-06 28.3 0.0 1.5e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Ras family ATP_bind_1 PF03029.17 gi|383318949|ref|YP_005379790.1| - 2.8e-06 27.3 0.0 1.1e-05 25.3 0.0 1.9 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|383318949|ref|YP_005379790.1| - 7.1e-06 26.2 0.0 8.9e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Arf PF00025.21 gi|383318949|ref|YP_005379790.1| - 0.00013 21.5 0.0 0.00041 19.8 0.0 1.8 1 1 0 1 1 1 1 ADP-ribosylation factor family SRPRB PF09439.10 gi|383318949|ref|YP_005379790.1| - 0.00021 20.8 0.0 0.00042 19.8 0.0 1.5 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit MMR_HSR1 PF01926.23 gi|383318949|ref|YP_005379790.1| - 0.0022 18.1 0.0 0.0031 17.6 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF460 PF04312.13 gi|383318949|ref|YP_005379790.1| - 0.015 15.0 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF460) MMR_HSR1_Xtn PF16897.5 gi|383318949|ref|YP_005379790.1| - 0.073 13.1 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain AMMECR1 PF01871.17 gi|383318951|ref|YP_005379792.1| - 4e-53 179.4 0.0 4.6e-53 179.2 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 DDE_Tnp_1 PF01609.21 gi|383318952|ref|YP_005379793.1| - 2.2e-06 27.5 0.0 4.6e-06 26.4 0.0 1.4 1 1 0 1 1 1 1 Transposase DDE domain PHO4 PF01384.20 gi|383318953|ref|YP_005379794.1| - 2e-85 286.8 37.2 6.8e-85 285.1 37.2 1.7 1 1 0 1 1 1 1 Phosphate transporter family TraQ PF09679.10 gi|383318953|ref|YP_005379794.1| - 0.079 12.9 0.1 0.079 12.9 0.1 3.4 4 1 1 5 5 5 0 Type-F conjugative transfer system pilin chaperone (TraQ) Myc_target_1 PF15179.6 gi|383318953|ref|YP_005379794.1| - 0.097 12.6 5.6 0.86 9.5 0.5 2.3 2 0 0 2 2 2 0 Myc target protein 1 Amidohydro_1 PF01979.20 gi|383318954|ref|YP_005379795.1| - 7e-29 101.2 0.1 9.5e-29 100.8 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|383318954|ref|YP_005379795.1| - 1.1e-12 48.2 0.5 2.8e-07 30.4 0.1 2.6 2 1 0 2 2 2 2 Amidohydrolase family Cation_efflux PF01545.21 gi|383318955|ref|YP_005379796.1| - 1.3e-41 142.6 12.9 1.5e-41 142.3 12.9 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|383318955|ref|YP_005379796.1| - 4e-24 84.5 0.1 6.5e-24 83.9 0.1 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF167 PF02594.16 gi|383318956|ref|YP_005379797.1| - 1e-19 70.4 0.0 1.3e-19 70.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Toprim_4 PF13662.6 gi|383318957|ref|YP_005379798.1| - 4.6e-05 23.8 0.0 0.00019 21.8 0.0 1.9 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.22 gi|383318957|ref|YP_005379798.1| - 0.00079 19.6 0.1 0.0037 17.5 0.1 2.0 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|383318957|ref|YP_005379798.1| - 0.018 15.4 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 Toprim-like Toprim_4 PF13662.6 gi|383318958|ref|YP_005379799.1| - 2e-13 50.6 0.3 4.7e-13 49.4 0.3 1.7 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|383318958|ref|YP_005379799.1| - 6.4e-08 32.9 0.0 2.2e-07 31.2 0.0 2.0 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|383318958|ref|YP_005379799.1| - 0.00016 21.8 0.9 0.001 19.3 0.1 2.6 2 1 0 2 2 2 1 Toprim domain Pex14_N PF04695.13 gi|383318958|ref|YP_005379799.1| - 0.1 13.2 7.4 0.19 12.4 7.4 1.3 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Presenilin PF01080.17 gi|383318958|ref|YP_005379799.1| - 0.47 9.2 6.0 0.58 8.9 6.0 1.1 1 0 0 1 1 1 0 Presenilin ALMT PF11744.8 gi|383318958|ref|YP_005379799.1| - 0.81 8.5 4.0 1.3 7.8 4.0 1.3 1 0 0 1 1 1 0 Aluminium activated malate transporter DDRGK PF09756.9 gi|383318958|ref|YP_005379799.1| - 9.2 5.8 19.2 13 5.4 17.6 1.9 1 1 1 2 2 2 0 DDRGK domain Acetyltransf_10 PF13673.7 gi|383318959|ref|YP_005379800.1| - 1.4e-16 60.6 0.1 1.6e-16 60.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|383318959|ref|YP_005379800.1| - 1.8e-16 60.4 0.2 2.4e-16 60.0 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|383318959|ref|YP_005379800.1| - 7.9e-13 48.6 0.3 1.2e-12 48.0 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|383318959|ref|YP_005379800.1| - 3.6e-07 30.1 0.1 5e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|383318959|ref|YP_005379800.1| - 0.0035 17.4 0.1 2.7 8.1 0.0 2.2 1 1 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|383318959|ref|YP_005379800.1| - 0.0043 17.1 0.1 0.0069 16.5 0.1 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|383318959|ref|YP_005379800.1| - 0.024 14.4 0.0 0.032 13.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_3 PF13302.7 gi|383318959|ref|YP_005379800.1| - 0.039 14.6 0.1 0.072 13.8 0.1 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|383318959|ref|YP_005379800.1| - 0.04 14.1 0.1 0.051 13.7 0.1 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|383318959|ref|YP_005379800.1| - 0.06 13.0 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain UPF0146 PF03686.13 gi|383318960|ref|YP_005379801.1| - 5.1e-37 126.6 0.0 6.2e-37 126.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) WSC PF01822.19 gi|383318961|ref|YP_005379802.1| - 0.19 11.9 0.6 0.56 10.4 0.0 2.0 2 0 0 2 2 2 0 WSC domain PRA1 PF03208.19 gi|383318966|ref|YP_005379807.1| - 6.6 6.3 12.7 25 4.5 12.7 1.8 1 1 0 1 1 1 0 PRA1 family protein GatB_N PF02934.15 gi|383318967|ref|YP_005379808.1| - 1.8e-67 227.6 0.0 2.6e-67 227.1 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|383318967|ref|YP_005379808.1| - 3.2e-22 79.0 0.2 6e-22 78.1 0.2 1.5 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|383318967|ref|YP_005379808.1| - 1.5e-16 60.4 1.1 3e-15 56.2 0.0 2.7 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|383318967|ref|YP_005379808.1| - 0.0028 17.8 0.9 0.0089 16.1 0.4 2.1 1 1 1 2 2 2 1 Yqey-like protein Asparaginase PF00710.20 gi|383318968|ref|YP_005379809.1| - 1.4e-58 197.6 1.3 4.7e-58 195.9 1.0 1.9 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|383318968|ref|YP_005379809.1| - 8.6e-34 116.2 0.2 4.4e-33 113.9 0.0 2.1 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|383318968|ref|YP_005379809.1| - 5.8e-18 63.9 0.9 5.8e-18 63.9 0.9 1.7 2 0 0 2 2 2 1 GatD N-terminal domain Peripla_BP_4 PF13407.6 gi|383318968|ref|YP_005379809.1| - 0.05 13.2 0.0 0.28 10.7 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding protein domain gpW PF02831.15 gi|383318968|ref|YP_005379809.1| - 0.093 12.7 0.1 0.33 10.9 0.1 2.0 1 0 0 1 1 1 0 gpW Lyase_1 PF00206.20 gi|383318969|ref|YP_005379810.1| - 5.6e-65 219.8 0.1 1.4e-64 218.5 0.0 1.6 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.6 gi|383318969|ref|YP_005379810.1| - 1.4e-13 51.4 0.1 1.8e-12 47.8 0.0 2.9 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal OrfB_Zn_ribbon PF07282.11 gi|383318970|ref|YP_005379811.1| - 8.4e-11 41.6 0.3 1.6e-10 40.8 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TraC_F_IV PF11130.8 gi|383318970|ref|YP_005379811.1| - 0.029 14.0 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 F pilus assembly Type-IV secretion system for plasmid transfer CdvA PF18822.1 gi|383318970|ref|YP_005379811.1| - 0.048 13.5 0.5 0.73 9.7 0.0 2.6 3 1 0 3 3 3 0 CdvA-like coiled-coil domain OrfB_IS605 PF01385.19 gi|383318970|ref|YP_005379811.1| - 3 8.1 6.5 0.72 10.1 0.1 2.7 3 0 0 3 3 3 0 Probable transposase PigN PF04987.14 gi|383318971|ref|YP_005379812.1| - 0.0023 16.9 0.3 0.0023 16.9 0.3 1.0 1 0 0 1 1 1 1 Phosphatidylinositolglycan class N (PIG-N) HR_lesion PF05514.11 gi|383318971|ref|YP_005379812.1| - 0.011 15.9 0.8 0.013 15.7 0.8 1.2 1 0 0 1 1 1 0 HR-like lesion-inducing DUF2198 PF09964.9 gi|383318971|ref|YP_005379812.1| - 0.035 14.2 1.7 0.041 14.0 1.7 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2198) Gram_pos_anchor PF00746.21 gi|383318971|ref|YP_005379812.1| - 5.7 7.0 5.8 4.2 7.4 4.3 1.7 1 1 0 1 1 1 0 LPXTG cell wall anchor motif AIRC PF00731.20 gi|383318972|ref|YP_005379813.1| - 2.1e-48 163.7 2.6 2.3e-48 163.5 2.6 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH_2 PF13685.6 gi|383318972|ref|YP_005379813.1| - 0.043 13.5 0.2 0.049 13.3 0.2 1.1 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase DXP_reductoisom PF02670.16 gi|383318972|ref|YP_005379813.1| - 0.065 14.0 0.0 0.095 13.4 0.0 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase SPOR PF05036.13 gi|383318972|ref|YP_005379813.1| - 0.1 13.0 0.1 8.6 6.8 0.0 2.2 1 1 1 2 2 2 0 Sporulation related domain Clavanin PF05452.11 gi|383318973|ref|YP_005379814.1| - 0.1 12.8 0.5 0.12 12.6 0.5 1.1 1 0 0 1 1 1 0 Clavanin ILVD_EDD PF00920.21 gi|383318974|ref|YP_005379815.1| - 2.5e-176 587.3 0.0 2.9e-176 587.1 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family Exog_C PF18026.1 gi|383318974|ref|YP_005379815.1| - 0.11 12.5 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 Endo/exonuclease (EXOG) C-terminal domain Radical_SAM PF04055.21 gi|383318975|ref|YP_005379816.1| - 2.2e-23 83.5 0.0 4.8e-23 82.4 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|383318975|ref|YP_005379816.1| - 2.2e-07 31.0 0.0 3.8e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|383318975|ref|YP_005379816.1| - 0.00043 20.6 0.0 0.00073 19.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain ThiC_Rad_SAM PF01964.18 gi|383318976|ref|YP_005379817.1| - 1.2e-173 577.8 0.0 1.3e-173 577.6 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family PEP_mutase PF13714.6 gi|383318976|ref|YP_005379817.1| - 0.057 12.9 0.0 0.15 11.5 0.0 1.7 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase ZNRF_3_ecto PF18212.1 gi|383318976|ref|YP_005379817.1| - 0.12 12.4 0.1 0.26 11.3 0.1 1.5 1 0 0 1 1 1 0 ZNRF-3 Ectodomain Lactamase_B PF00753.27 gi|383318977|ref|YP_005379818.1| - 5.4e-31 108.1 1.4 6.8e-31 107.8 1.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|383318977|ref|YP_005379818.1| - 4.2e-06 26.4 0.0 5e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|383318977|ref|YP_005379818.1| - 0.0042 16.6 0.0 0.13 11.7 0.0 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PGF-CTERM PF18204.1 gi|383318978|ref|YP_005379819.1| - 9e-06 25.5 0.1 1.5e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 PGF-CTERM motif HTH_AsnC-type PF13404.6 gi|383318979|ref|YP_005379820.1| - 7.9e-13 48.0 0.1 1.4e-12 47.2 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|383318979|ref|YP_005379820.1| - 2.2e-12 46.7 0.0 4.4e-12 45.8 0.0 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|383318979|ref|YP_005379820.1| - 3.4e-12 45.7 1.6 3.4e-12 45.7 1.6 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|383318979|ref|YP_005379820.1| - 3.7e-07 30.0 0.8 9.3e-07 28.7 0.4 1.9 2 0 0 2 2 1 1 HTH domain HTH_DeoR PF08220.12 gi|383318979|ref|YP_005379820.1| - 3.8e-06 26.5 0.2 2.5e-05 23.9 0.1 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|383318979|ref|YP_005379820.1| - 2.8e-05 23.9 0.1 4.5e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|383318979|ref|YP_005379820.1| - 4e-05 23.3 0.0 6.8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|383318979|ref|YP_005379820.1| - 5.1e-05 23.3 0.0 9.2e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Mga PF05043.13 gi|383318979|ref|YP_005379820.1| - 6.9e-05 23.4 1.0 0.0016 19.0 0.2 2.3 2 1 0 2 2 2 1 Mga helix-turn-helix domain MarR_2 PF12802.7 gi|383318979|ref|YP_005379820.1| - 0.00012 21.8 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.6 gi|383318979|ref|YP_005379820.1| - 0.0002 20.7 0.0 0.00056 19.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 gi|383318979|ref|YP_005379820.1| - 0.00026 20.7 0.1 0.00049 19.8 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Mga PF08280.11 gi|383318979|ref|YP_005379820.1| - 0.00075 19.5 0.4 0.0016 18.5 0.4 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain B-block_TFIIIC PF04182.12 gi|383318979|ref|YP_005379820.1| - 0.0008 19.5 0.1 0.0012 19.0 0.1 1.6 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|383318979|ref|YP_005379820.1| - 0.0011 18.8 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|383318979|ref|YP_005379820.1| - 0.0012 18.5 0.1 0.0023 17.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|383318979|ref|YP_005379820.1| - 0.0012 18.5 0.0 0.0023 17.7 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|383318979|ref|YP_005379820.1| - 0.0013 18.7 0.2 0.0038 17.2 0.0 2.0 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|383318979|ref|YP_005379820.1| - 0.0022 18.1 0.0 0.0053 16.9 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|383318979|ref|YP_005379820.1| - 0.0034 17.3 0.1 0.0068 16.3 0.1 1.4 1 0 0 1 1 1 1 MarR family ACT_4 PF13291.6 gi|383318979|ref|YP_005379820.1| - 0.0036 17.9 2.0 0.68 10.6 0.0 3.1 3 0 0 3 3 3 1 ACT domain Sigma70_r4 PF04545.16 gi|383318979|ref|YP_005379820.1| - 0.0045 16.5 0.0 0.0091 15.5 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 GntR PF00392.21 gi|383318979|ref|YP_005379820.1| - 0.0061 16.2 0.0 0.018 14.7 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|383318979|ref|YP_005379820.1| - 0.0094 16.3 0.1 0.018 15.3 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator TnsD PF15978.5 gi|383318979|ref|YP_005379820.1| - 0.011 14.7 0.1 0.019 14.0 0.1 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D SpoIIID PF12116.8 gi|383318979|ref|YP_005379820.1| - 0.012 15.7 0.1 0.04 14.0 0.0 1.9 2 0 0 2 2 1 0 Stage III sporulation protein D HTH_30 PF13556.6 gi|383318979|ref|YP_005379820.1| - 0.015 15.1 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain RepL PF05732.11 gi|383318979|ref|YP_005379820.1| - 0.018 14.5 1.9 0.02 14.3 0.1 1.9 2 0 0 2 2 2 0 Firmicute plasmid replication protein (RepL) Sigma70_r4_2 PF08281.12 gi|383318979|ref|YP_005379820.1| - 0.018 14.7 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 DUF4423 PF14394.6 gi|383318979|ref|YP_005379820.1| - 0.018 14.7 0.1 0.033 13.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_36 PF13730.6 gi|383318979|ref|YP_005379820.1| - 0.025 14.5 0.8 0.054 13.5 0.1 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|383318979|ref|YP_005379820.1| - 0.031 14.1 1.5 0.048 13.5 0.1 1.9 2 1 0 2 2 2 0 TFIIE alpha subunit DUF2089 PF09862.9 gi|383318979|ref|YP_005379820.1| - 0.032 14.3 0.0 0.065 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) GerE PF00196.19 gi|383318979|ref|YP_005379820.1| - 0.041 13.4 0.1 0.12 12.0 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Tnp_1_2 PF13022.6 gi|383318979|ref|YP_005379820.1| - 0.042 14.0 0.1 0.11 12.7 0.0 1.7 2 1 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_47 PF16221.5 gi|383318979|ref|YP_005379820.1| - 0.056 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 winged helix-turn-helix HTH_26 PF13443.6 gi|383318979|ref|YP_005379820.1| - 0.057 13.9 0.2 0.16 12.4 0.1 1.9 2 0 0 2 2 1 0 Cro/C1-type HTH DNA-binding domain HTH_AraC PF00165.23 gi|383318979|ref|YP_005379820.1| - 0.064 13.4 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family NapD PF03927.13 gi|383318979|ref|YP_005379820.1| - 0.077 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 NapD protein HTH_9 PF08221.11 gi|383318979|ref|YP_005379820.1| - 0.094 12.8 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain IF2_N PF04760.15 gi|383318979|ref|YP_005379820.1| - 0.097 12.5 0.4 7.2 6.5 0.0 2.9 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_1 PF00126.27 gi|383318979|ref|YP_005379820.1| - 0.1 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_50 PF18024.1 gi|383318979|ref|YP_005379820.1| - 0.11 12.2 0.1 0.37 10.4 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain DDRGK PF09756.9 gi|383318979|ref|YP_005379820.1| - 0.11 12.1 0.2 0.24 11.0 0.2 1.5 1 0 0 1 1 1 0 DDRGK domain LexA_DNA_bind PF01726.16 gi|383318979|ref|YP_005379820.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_Tnp_4 PF13613.6 gi|383318979|ref|YP_005379820.1| - 0.15 11.8 0.0 0.34 10.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DUF362 PF04015.12 gi|383318980|ref|YP_005379821.1| - 2.4e-35 122.6 0.0 3.2e-34 118.9 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF362) DUF4491 PF14898.6 gi|383318981|ref|YP_005379822.1| - 0.17 12.3 0.8 0.34 11.4 0.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4491) TctB PF07331.11 gi|383318982|ref|YP_005379823.1| - 0.015 15.5 4.9 0.019 15.2 4.9 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Polysacc_deac_1 PF01522.21 gi|383318983|ref|YP_005379824.1| - 3.5e-05 23.7 0.0 5.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 gi|383318983|ref|YP_005379824.1| - 0.0048 16.1 0.0 0.0065 15.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF2334 PF10096.9 gi|383318983|ref|YP_005379824.1| - 0.034 13.8 0.0 0.076 12.7 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) FemAB PF02388.16 gi|383318984|ref|YP_005379825.1| - 1.9e-08 33.6 1.0 2e-05 23.7 0.2 2.1 2 0 0 2 2 2 2 FemAB family Acetyltransf_6 PF13480.7 gi|383318984|ref|YP_005379825.1| - 0.00043 20.5 0.2 0.0012 19.0 0.2 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Phage_fiber_C PF06820.12 gi|383318984|ref|YP_005379825.1| - 0.058 13.7 0.1 0.19 12.1 0.0 1.9 2 0 0 2 2 2 0 Putative prophage tail fibre C-terminus Glycos_transf_1 PF00534.20 gi|383318985|ref|YP_005379826.1| - 4.7e-27 94.6 0.0 7.3e-27 94.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383318985|ref|YP_005379826.1| - 4.6e-23 82.1 0.0 6.8e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383318985|ref|YP_005379826.1| - 1.5e-11 44.6 0.0 2.9e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|383318985|ref|YP_005379826.1| - 2.4e-10 40.7 0.0 5.2e-10 39.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|383318985|ref|YP_005379826.1| - 6.4e-08 33.2 0.0 1.2e-07 32.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|383318986|ref|YP_005379827.1| - 3.5e-32 111.3 0.0 5.9e-32 110.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383318986|ref|YP_005379827.1| - 1.3e-31 109.9 0.0 2e-31 109.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|383318986|ref|YP_005379827.1| - 1.7e-30 106.1 0.0 2.9e-30 105.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|383318986|ref|YP_005379827.1| - 9.7e-23 81.4 0.0 1.9e-22 80.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|383318986|ref|YP_005379827.1| - 2.6e-09 37.4 0.0 5.7e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|383318986|ref|YP_005379827.1| - 0.00014 21.9 0.0 0.00023 21.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|383318986|ref|YP_005379827.1| - 0.015 15.0 0.3 0.3 10.7 0.0 2.2 1 1 1 2 2 2 0 Starch synthase catalytic domain Glycos_transf_N PF04413.16 gi|383318986|ref|YP_005379827.1| - 0.052 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glycos_transf_1 PF00534.20 gi|383318987|ref|YP_005379828.1| - 2.7e-22 79.1 0.0 3.7e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383318987|ref|YP_005379828.1| - 1.1e-20 74.4 0.0 2e-20 73.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|383318987|ref|YP_005379828.1| - 1.1e-13 51.3 0.0 1.9e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383318987|ref|YP_005379828.1| - 5.6e-07 29.7 0.6 1e-06 28.9 0.2 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|383318987|ref|YP_005379828.1| - 0.0026 18.2 0.3 0.0051 17.3 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Epimerase PF01370.21 gi|383318988|ref|YP_005379829.1| - 1.8e-57 194.6 0.0 2.2e-57 194.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|383318988|ref|YP_005379829.1| - 5.1e-57 193.8 0.0 8.5e-57 193.0 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|383318988|ref|YP_005379829.1| - 5e-20 71.7 0.0 7.4e-20 71.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|383318988|ref|YP_005379829.1| - 3.7e-10 39.4 0.0 1.1e-05 24.7 0.0 3.0 1 1 1 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|383318988|ref|YP_005379829.1| - 3.2e-09 36.3 0.0 1.4e-08 34.3 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|383318988|ref|YP_005379829.1| - 4.7e-09 35.7 0.0 9.3e-09 34.8 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|383318988|ref|YP_005379829.1| - 0.0024 17.5 0.0 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 gi|383318988|ref|YP_005379829.1| - 0.0096 15.8 0.2 0.15 12.0 0.0 2.6 2 1 0 2 2 2 1 NAD(P)H-binding KR PF08659.10 gi|383318988|ref|YP_005379829.1| - 0.015 15.3 0.6 0.86 9.5 0.1 3.1 2 1 0 2 2 2 0 KR domain adh_short PF00106.25 gi|383318988|ref|YP_005379829.1| - 0.1 12.0 0.1 0.22 10.9 0.1 1.7 1 1 0 1 1 1 0 short chain dehydrogenase Glyco_hydro_16 PF00722.21 gi|383318989|ref|YP_005379830.1| - 9.8e-25 87.0 7.4 1.3e-24 86.7 7.4 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 16 CBM-like PF14683.6 gi|383318989|ref|YP_005379830.1| - 0.041 13.8 0.0 0.073 12.9 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain III Polysacc_synt_3 PF13440.6 gi|383318990|ref|YP_005379831.1| - 1.5e-16 60.5 21.3 1.5e-16 60.5 21.3 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|383318990|ref|YP_005379831.1| - 1.9e-15 57.2 23.3 1.9e-15 57.2 23.3 4.6 3 2 2 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|383318990|ref|YP_005379831.1| - 4e-15 55.9 33.5 4e-15 55.9 33.5 2.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|383318990|ref|YP_005379831.1| - 4.9e-13 49.0 30.2 2.7e-08 33.6 9.8 4.1 3 1 1 4 4 4 2 MatE Glyco_hydro_16 PF00722.21 gi|383318991|ref|YP_005379832.1| - 1.1e-44 152.1 16.5 4.3e-23 81.7 8.9 2.1 2 0 0 2 2 2 2 Glycosyl hydrolases family 16 DUF2206 PF09971.9 gi|383318992|ref|YP_005379833.1| - 8.2e-78 261.8 14.6 8.2e-78 261.8 14.6 2.5 3 0 0 3 3 3 1 Predicted membrane protein (DUF2206) Glycos_transf_2 PF00535.26 gi|383318993|ref|YP_005379834.1| - 5.2e-23 81.7 0.0 6.6e-23 81.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|383318993|ref|YP_005379834.1| - 5.1e-06 26.6 0.0 7.6e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|383318993|ref|YP_005379834.1| - 0.01 16.2 0.0 0.012 16.0 0.0 1.2 1 0 0 1 1 1 0 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.6 gi|383318993|ref|YP_005379834.1| - 0.018 15.5 0.0 0.1 13.1 0.0 1.9 1 1 1 2 2 2 0 Glycosyl transferase family 2 SplA PF11132.8 gi|383318993|ref|YP_005379834.1| - 0.18 11.6 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator protein (SplA) VirB3 PF05101.13 gi|383318993|ref|YP_005379834.1| - 0.52 10.6 5.2 0.95 9.7 5.2 1.4 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein BofA PF07441.11 gi|383318993|ref|YP_005379834.1| - 4 7.7 7.2 13 6.1 7.2 1.8 1 1 0 1 1 1 0 SigmaK-factor processing regulatory protein BofA SIS PF01380.22 gi|383318994|ref|YP_005379835.1| - 1.4e-57 193.1 4.6 6.7e-31 106.9 0.7 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|383318994|ref|YP_005379835.1| - 4.5e-21 75.4 0.0 7.9e-21 74.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|383318994|ref|YP_005379835.1| - 8.8e-17 61.2 0.0 1.7e-16 60.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|383318994|ref|YP_005379835.1| - 0.03 13.2 0.0 0.047 12.6 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II AcylCoA_dehyd_C PF12186.8 gi|383318994|ref|YP_005379835.1| - 0.16 12.1 0.1 0.62 10.2 0.0 2.0 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase C terminal SIS_2 PF13580.6 gi|383318994|ref|YP_005379835.1| - 0.17 11.9 2.8 0.45 10.5 0.1 2.4 2 0 0 2 2 2 0 SIS domain NTP_transferase PF00483.23 gi|383318995|ref|YP_005379836.1| - 4.5e-42 144.3 0.0 5.5e-42 144.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|383318995|ref|YP_005379836.1| - 1.4e-17 62.6 14.4 3.2e-09 36.2 3.5 5.6 2 2 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|383318995|ref|YP_005379836.1| - 2e-16 60.8 0.0 2.3e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|383318995|ref|YP_005379836.1| - 2.6e-07 30.3 2.4 2.6e-07 30.3 2.4 5.7 6 0 0 6 6 6 1 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|383318995|ref|YP_005379836.1| - 1e-06 28.6 0.2 2e-05 24.4 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|383318995|ref|YP_005379836.1| - 0.009 16.0 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_4 PF13562.6 gi|383318995|ref|YP_005379836.1| - 0.085 13.1 0.2 6.7 6.9 0.1 3.0 2 1 0 2 2 2 0 Sugar nucleotidyl transferase Fucokinase PF07959.12 gi|383318995|ref|YP_005379836.1| - 0.28 10.1 1.2 2.9 6.8 0.5 2.6 2 1 0 2 2 2 0 L-fucokinase HTH_AsnC-type PF13404.6 gi|383318996|ref|YP_005379837.1| - 9e-11 41.4 0.0 1.4e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|383318996|ref|YP_005379837.1| - 1.4e-10 41.0 0.0 1.9e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|383318996|ref|YP_005379837.1| - 8.4e-09 34.9 0.1 1.7e-08 33.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|383318996|ref|YP_005379837.1| - 0.00012 21.8 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|383318996|ref|YP_005379837.1| - 0.00034 20.5 0.0 0.00093 19.1 0.0 1.7 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|383318996|ref|YP_005379837.1| - 0.00049 20.0 0.0 0.0011 18.9 0.0 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|383318996|ref|YP_005379837.1| - 0.0018 18.4 0.0 0.0038 17.4 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 gi|383318996|ref|YP_005379837.1| - 0.0037 17.0 0.0 0.0067 16.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|383318996|ref|YP_005379837.1| - 0.0051 16.7 0.0 0.023 14.6 0.0 2.1 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|383318996|ref|YP_005379837.1| - 0.0086 15.8 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|383318996|ref|YP_005379837.1| - 0.027 14.1 0.0 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family NapD PF03927.13 gi|383318996|ref|YP_005379837.1| - 0.031 14.3 0.0 0.055 13.5 0.0 1.3 1 0 0 1 1 1 0 NapD protein Sigma70_r4 PF04545.16 gi|383318996|ref|YP_005379837.1| - 0.051 13.1 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|383318996|ref|YP_005379837.1| - 0.051 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Met_gamma_lyase PF06838.11 gi|383318996|ref|YP_005379837.1| - 0.08 11.5 0.0 0.095 11.2 0.0 1.1 1 0 0 1 1 1 0 Methionine gamma-lyase HTH_27 PF13463.6 gi|383318996|ref|YP_005379837.1| - 0.11 13.1 0.0 0.61 10.6 0.0 2.2 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|383318996|ref|YP_005379837.1| - 0.13 12.0 0.1 0.6 9.9 0.0 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|383318996|ref|YP_005379837.1| - 0.17 11.6 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_4 PF13613.6 gi|383318996|ref|YP_005379837.1| - 0.18 11.6 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_24 PF13412.6 gi|383318997|ref|YP_005379838.1| - 3.6e-12 45.6 0.4 6.1e-12 44.9 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|383318997|ref|YP_005379838.1| - 1e-10 41.4 0.2 1.9e-10 40.6 0.2 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|383318997|ref|YP_005379838.1| - 1.4e-09 37.7 0.1 2.8e-09 36.6 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Mga PF08280.11 gi|383318997|ref|YP_005379838.1| - 8.1e-06 25.8 0.5 3.9e-05 23.6 0.1 2.1 2 1 1 3 3 3 1 M protein trans-acting positive regulator (MGA) HTH domain AsnC_trans_reg2 PF17805.1 gi|383318997|ref|YP_005379838.1| - 0.00074 19.6 0.0 0.0016 18.6 0.0 1.5 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_20 PF12840.7 gi|383318997|ref|YP_005379838.1| - 0.0017 18.4 0.0 0.003 17.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|383318997|ref|YP_005379838.1| - 0.0018 18.0 0.1 0.0032 17.2 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|383318997|ref|YP_005379838.1| - 0.0048 16.8 0.0 0.0089 15.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|383318997|ref|YP_005379838.1| - 0.011 15.6 0.2 0.068 13.1 0.0 2.1 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|383318997|ref|YP_005379838.1| - 0.013 15.4 0.2 0.024 14.6 0.2 1.4 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.20 gi|383318997|ref|YP_005379838.1| - 0.013 15.3 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 gi|383318997|ref|YP_005379838.1| - 0.014 15.1 0.2 0.13 12.1 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|383318997|ref|YP_005379838.1| - 0.03 14.1 0.1 0.24 11.3 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.6 gi|383318997|ref|YP_005379838.1| - 0.039 14.1 0.1 0.53 10.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|383318997|ref|YP_005379838.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF3535 PF12054.8 gi|383318997|ref|YP_005379838.1| - 0.11 11.7 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3535) DELLA PF12041.8 gi|383318997|ref|YP_005379838.1| - 0.15 11.9 0.0 0.62 10.0 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator DELLA protein N terminal Glycos_transf_1 PF00534.20 gi|383318998|ref|YP_005379839.1| - 4.1e-35 120.9 0.0 6.1e-35 120.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383318998|ref|YP_005379839.1| - 7.1e-25 88.0 0.2 3.7e-24 85.6 0.2 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|383318998|ref|YP_005379839.1| - 1.4e-22 80.5 0.0 2.5e-22 79.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|383318998|ref|YP_005379839.1| - 4.1e-21 76.1 0.4 6.5e-21 75.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|383318998|ref|YP_005379839.1| - 6e-17 62.1 0.2 5e-16 59.2 0.2 2.3 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|383318998|ref|YP_005379839.1| - 1.4e-06 28.6 0.0 3.5e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.13 gi|383318998|ref|YP_005379839.1| - 0.018 13.7 0.0 2.7 6.4 0.0 2.1 2 0 0 2 2 2 0 Glycogen synthase Glyco_trans_4_2 PF13477.6 gi|383318998|ref|YP_005379839.1| - 0.047 13.7 0.0 0.12 12.4 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase 4-like Glyco_transf_20 PF00982.21 gi|383318998|ref|YP_005379839.1| - 0.083 11.5 0.0 0.28 9.8 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase family 20 DJ-1_PfpI PF01965.24 gi|383319000|ref|YP_005379841.1| - 2.7e-35 121.6 0.0 3.3e-35 121.3 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family AP_endonuc_2 PF01261.24 gi|383319001|ref|YP_005379842.1| - 1e-24 87.2 0.2 1.2e-24 86.9 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|383319001|ref|YP_005379842.1| - 0.0006 18.7 0.0 0.0009 18.2 0.0 1.2 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) Glyoxalase_4 PF13669.6 gi|383319001|ref|YP_005379842.1| - 0.035 14.4 0.1 0.15 12.3 0.1 1.9 2 0 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HD_assoc PF13286.6 gi|383319002|ref|YP_005379843.1| - 9.6e-12 45.3 0.1 3e-11 43.7 0.1 1.9 2 0 0 2 2 2 1 Phosphohydrolase-associated domain HD PF01966.22 gi|383319002|ref|YP_005379843.1| - 3.4e-11 43.4 0.6 1.1e-10 41.8 0.1 2.1 2 0 0 2 2 2 1 HD domain Rx_N PF18052.1 gi|383319002|ref|YP_005379843.1| - 0.12 12.7 0.0 0.3 11.4 0.0 1.7 1 0 0 1 1 1 0 Rx N-terminal domain HTH_10 PF04967.12 gi|383319003|ref|YP_005379844.1| - 5.1e-23 80.6 0.2 2.5e-22 78.4 0.1 2.0 2 0 0 2 2 2 1 HTH DNA binding domain Fe_dep_repress PF01325.19 gi|383319003|ref|YP_005379844.1| - 0.0026 17.9 0.1 0.0053 16.9 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|383319003|ref|YP_005379844.1| - 0.0036 16.8 0.0 0.014 15.0 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_1 PF00126.27 gi|383319003|ref|YP_005379844.1| - 0.0099 15.8 0.1 0.39 10.7 0.1 2.8 2 1 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 gi|383319003|ref|YP_005379844.1| - 0.011 15.6 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.12 gi|383319003|ref|YP_005379844.1| - 0.016 14.9 1.8 0.024 14.3 0.2 2.2 2 1 0 2 2 2 0 Sigma-70, region 4 LacI PF00356.21 gi|383319003|ref|YP_005379844.1| - 0.022 14.6 0.1 0.061 13.1 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_17 PF12728.7 gi|383319003|ref|YP_005379844.1| - 0.027 14.7 0.3 0.067 13.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|383319003|ref|YP_005379844.1| - 0.079 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_30 PF13556.6 gi|383319003|ref|YP_005379844.1| - 0.087 12.6 0.1 0.32 10.8 0.0 1.9 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|383319003|ref|YP_005379844.1| - 0.096 12.1 0.0 0.24 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|383319003|ref|YP_005379844.1| - 0.11 12.3 0.7 0.3 11.0 0.0 2.1 3 0 0 3 3 3 0 Homeodomain-like domain MCC-bdg_PDZ PF10506.9 gi|383319003|ref|YP_005379844.1| - 0.12 12.4 0.1 0.37 10.8 0.0 1.8 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome HTH_40 PF14493.6 gi|383319003|ref|YP_005379844.1| - 0.13 12.7 0.1 0.6 10.6 0.0 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|383319003|ref|YP_005379844.1| - 0.14 12.0 0.2 0.76 9.6 0.2 2.2 2 1 0 2 2 2 0 LexA DNA binding domain IlvN PF07991.12 gi|383319004|ref|YP_005379845.1| - 5.4e-76 253.8 1.5 6.9e-76 253.4 1.5 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|383319004|ref|YP_005379845.1| - 2.1e-64 216.2 0.3 3.1e-64 215.6 0.3 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|383319004|ref|YP_005379845.1| - 4.1e-06 26.3 0.1 6.4e-06 25.6 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|383319004|ref|YP_005379845.1| - 1.2e-05 25.5 0.1 2.3e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|383319004|ref|YP_005379845.1| - 0.00027 21.5 0.1 0.00052 20.5 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|383319004|ref|YP_005379845.1| - 0.00032 20.8 0.3 0.00064 19.8 0.3 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Oxidored_nitro PF00148.19 gi|383319004|ref|YP_005379845.1| - 0.0087 14.8 0.2 0.017 13.9 0.1 1.5 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|383319004|ref|YP_005379845.1| - 0.051 13.5 0.4 7 6.6 0.0 2.6 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.9 gi|383319004|ref|YP_005379845.1| - 0.15 11.9 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Rossmann-like domain BppU_N PF10651.9 gi|383319005|ref|YP_005379846.1| - 0.095 12.4 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 BppU N-terminal domain DUF1493 PF07377.12 gi|383319006|ref|YP_005379847.1| - 0.0093 16.4 0.0 0.015 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1493) MacB_PCD PF12704.7 gi|383319007|ref|YP_005379848.1| - 2.7e-27 96.4 2.5 2.7e-27 96.4 2.5 2.4 3 1 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|383319007|ref|YP_005379848.1| - 4.4e-13 49.5 3.2 4.4e-13 49.5 3.2 3.2 3 0 0 3 3 3 1 FtsX-like permease family PCMT PF01135.19 gi|383319007|ref|YP_005379848.1| - 0.039 13.7 0.0 0.076 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Picorna_P3A PF06363.11 gi|383319007|ref|YP_005379848.1| - 0.4 10.6 1.5 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 Picornaviridae P3A protein DUF4064 PF13273.6 gi|383319007|ref|YP_005379848.1| - 6.6 7.1 17.2 2.2 8.6 8.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) MacB_PCD PF12704.7 gi|383319008|ref|YP_005379849.1| - 1.8e-26 93.7 4.7 1.8e-26 93.7 4.7 2.2 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|383319008|ref|YP_005379849.1| - 2.6e-12 47.0 1.2 2.6e-12 47.0 1.2 3.1 3 0 0 3 3 3 1 FtsX-like permease family DUF2628 PF10947.8 gi|383319008|ref|YP_005379849.1| - 0.38 11.1 5.4 0.69 10.3 2.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) DUF1418 PF07214.12 gi|383319008|ref|YP_005379849.1| - 0.97 9.3 6.3 0.72 9.7 1.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1418) NPCBM_assoc PF10633.9 gi|383319009|ref|YP_005379850.1| - 0.0015 18.7 0.9 1.2 9.4 0.0 3.6 3 1 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase GldH_lipo PF14109.6 gi|383319009|ref|YP_005379850.1| - 0.0054 17.5 0.1 0.03 15.1 0.0 2.2 3 0 0 3 3 3 1 GldH lipoprotein HIG_1_N PF04588.13 gi|383319009|ref|YP_005379850.1| - 0.23 11.7 0.2 0.23 11.7 0.2 1.8 2 0 0 2 2 2 0 Hypoxia induced protein conserved region ABC_tran PF00005.27 gi|383319010|ref|YP_005379851.1| - 1.7e-32 112.8 0.0 2.2e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383319010|ref|YP_005379851.1| - 1.3e-09 38.3 0.1 9.6e-05 22.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383319010|ref|YP_005379851.1| - 1.2e-05 24.8 0.2 9.7e-05 21.9 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|383319010|ref|YP_005379851.1| - 0.00016 21.4 0.1 0.00027 20.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|383319010|ref|YP_005379851.1| - 0.0018 18.5 0.1 0.0049 17.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|383319010|ref|YP_005379851.1| - 0.0033 17.3 0.1 0.0057 16.6 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|383319010|ref|YP_005379851.1| - 0.0039 17.6 0.0 0.0068 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|383319010|ref|YP_005379851.1| - 0.0097 15.7 0.0 1.3 8.6 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|383319010|ref|YP_005379851.1| - 0.01 16.4 0.1 0.016 15.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|383319010|ref|YP_005379851.1| - 0.054 13.6 0.1 0.15 12.1 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|383319010|ref|YP_005379851.1| - 0.067 12.9 0.0 1.1 9.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|383319010|ref|YP_005379851.1| - 0.1 13.2 0.0 0.23 12.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|383319010|ref|YP_005379851.1| - 0.14 11.8 0.0 0.29 10.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|383319010|ref|YP_005379851.1| - 0.15 11.2 0.1 0.29 10.3 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain PRK PF00485.18 gi|383319010|ref|YP_005379851.1| - 0.18 11.5 0.0 0.44 10.3 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|383319010|ref|YP_005379851.1| - 0.18 12.0 0.2 0.48 10.6 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|383319010|ref|YP_005379851.1| - 0.18 11.3 0.0 0.36 10.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|383319010|ref|YP_005379851.1| - 0.22 11.9 0.0 0.46 10.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase IMPDH PF00478.25 gi|383319011|ref|YP_005379852.1| - 1.1e-147 491.5 11.3 1.3e-147 491.3 11.3 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|383319011|ref|YP_005379852.1| - 5e-25 87.7 6.8 7.8e-12 45.5 0.5 3.0 3 0 0 3 3 3 2 CBS domain NMO PF03060.15 gi|383319011|ref|YP_005379852.1| - 1.7e-09 37.5 10.6 0.00037 20.0 7.8 2.7 2 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|383319011|ref|YP_005379852.1| - 2.9e-06 26.6 13.5 8.9e-06 25.0 11.8 2.3 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|383319011|ref|YP_005379852.1| - 0.00016 20.9 5.0 0.00029 20.1 5.0 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|383319011|ref|YP_005379852.1| - 0.0056 16.2 3.0 0.0056 16.2 3.0 2.1 2 1 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|383319011|ref|YP_005379852.1| - 0.01 15.2 1.7 0.01 15.2 1.7 2.5 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG HET-s_218-289 PF11558.8 gi|383319011|ref|YP_005379852.1| - 0.16 12.0 0.4 2.5 8.2 0.1 2.4 2 0 0 2 2 2 0 Het-s 218-289 4HFCP_synth PF04476.13 gi|383319012|ref|YP_005379853.1| - 1.3e-88 296.6 0.0 1.5e-88 296.4 0.0 1.0 1 0 0 1 1 1 1 4-HFC-P synthase QRPTase_C PF01729.19 gi|383319012|ref|YP_005379853.1| - 0.0012 18.7 0.0 0.0068 16.2 0.0 2.1 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain tRNA_anti-codon PF01336.25 gi|383319013|ref|YP_005379854.1| - 5.3e-30 103.2 9.4 5.5e-11 42.3 0.6 4.1 3 1 0 3 3 3 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|383319013|ref|YP_005379854.1| - 3.4e-13 49.8 0.1 2.9e-05 23.9 0.0 3.2 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|383319013|ref|YP_005379854.1| - 1.7e-07 31.1 0.5 0.24 11.3 0.0 3.3 3 0 0 3 3 3 3 Replication protein A OB domain SSB PF00436.25 gi|383319013|ref|YP_005379854.1| - 3.3e-06 27.1 0.1 0.0039 17.2 0.0 3.0 3 0 0 3 3 3 2 Single-strand binding protein family Psb28 PF03912.14 gi|383319013|ref|YP_005379854.1| - 0.004 17.4 0.1 3.1 8.1 0.0 2.5 2 0 0 2 2 2 2 Psb28 protein DUF5088 PF17008.5 gi|383319013|ref|YP_005379854.1| - 0.031 14.0 0.0 9.6 5.9 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF5088) HIGH_NTase1_ass PF16581.5 gi|383319013|ref|YP_005379854.1| - 0.045 13.7 0.0 0.11 12.4 0.0 1.6 1 1 1 2 2 2 0 Cytidyltransferase-related C-terminal region DUF3127 PF11325.8 gi|383319013|ref|YP_005379854.1| - 0.047 13.9 0.0 0.87 9.9 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3127) DUF4539 PF15072.6 gi|383319013|ref|YP_005379854.1| - 0.055 13.5 1.3 5.7 7.0 0.0 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4539) DNA_pol_D_N PF18018.1 gi|383319013|ref|YP_005379854.1| - 0.49 10.5 6.1 13 5.9 0.5 3.8 2 1 1 3 3 3 0 DNA polymerase delta subunit OB-fold domain Aconitase PF00330.20 gi|383319014|ref|YP_005379855.1| - 1.8e-98 330.5 0.1 1.7e-96 324.0 0.1 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|383319015|ref|YP_005379856.1| - 1e-22 80.8 0.0 5.1e-21 75.4 0.0 2.1 1 1 1 2 2 2 2 Aconitase C-terminal domain Iso_dh PF00180.20 gi|383319016|ref|YP_005379857.1| - 4.5e-92 308.9 0.0 5.2e-92 308.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase HTH_20 PF12840.7 gi|383319017|ref|YP_005379858.1| - 2.6e-06 27.4 0.0 5.9e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|383319017|ref|YP_005379858.1| - 0.0016 18.3 0.1 0.0039 17.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|383319017|ref|YP_005379858.1| - 0.0022 17.9 0.0 0.0037 17.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix SKA2 PF16740.5 gi|383319017|ref|YP_005379858.1| - 0.011 15.5 0.2 0.03 14.1 0.2 1.7 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 HTH_27 PF13463.6 gi|383319017|ref|YP_005379858.1| - 0.011 16.2 0.2 0.053 14.0 0.0 2.2 3 0 0 3 3 3 0 Winged helix DNA-binding domain Mrr_N PF14338.6 gi|383319017|ref|YP_005379858.1| - 0.013 15.7 0.1 0.057 13.5 0.0 2.2 2 0 0 2 2 2 0 Mrr N-terminal domain XhlA PF10779.9 gi|383319017|ref|YP_005379858.1| - 0.12 12.6 1.6 7.6 6.8 0.1 2.7 2 1 1 3 3 3 0 Haemolysin XhlA Phage_HK97_TLTM PF06120.11 gi|383319017|ref|YP_005379858.1| - 0.18 11.0 0.4 0.41 9.8 0.1 1.7 2 0 0 2 2 2 0 Tail length tape measure protein FbpA PF05833.11 gi|383319017|ref|YP_005379858.1| - 0.3 9.8 1.9 0.43 9.3 0.9 1.7 1 1 1 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) Sugarporin_N PF11471.8 gi|383319017|ref|YP_005379858.1| - 0.56 10.2 4.2 0.67 10.0 2.7 1.9 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension Spc7 PF08317.11 gi|383319017|ref|YP_005379858.1| - 1.4 7.7 4.2 1.8 7.4 1.2 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF2225 PF09986.9 gi|383319018|ref|YP_005379859.1| - 9.8e-28 97.3 0.0 1.5e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_12 PF13424.6 gi|383319018|ref|YP_005379859.1| - 1.7e-05 25.0 1.4 0.023 15.0 0.0 2.8 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383319018|ref|YP_005379859.1| - 3.8e-05 23.4 0.3 0.28 11.3 0.0 3.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|383319018|ref|YP_005379859.1| - 3.9e-05 23.5 3.9 0.0011 19.0 0.2 3.2 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|383319018|ref|YP_005379859.1| - 8.8e-05 22.3 4.1 0.0098 15.9 0.1 2.9 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|383319018|ref|YP_005379859.1| - 0.0019 17.9 2.6 0.1 12.4 0.2 2.7 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|383319018|ref|YP_005379859.1| - 0.0043 17.7 0.2 0.47 11.4 0.0 2.7 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|383319018|ref|YP_005379859.1| - 0.0048 17.5 2.1 0.0081 16.8 0.5 2.2 2 1 1 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|383319018|ref|YP_005379859.1| - 0.009 16.2 0.3 0.022 15.0 0.0 1.7 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TF_Zn_Ribbon PF08271.12 gi|383319018|ref|YP_005379859.1| - 0.015 14.8 0.7 2.3 7.8 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding TPR_19 PF14559.6 gi|383319018|ref|YP_005379859.1| - 0.044 14.3 0.1 0.11 13.0 0.1 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat Nudix_N_2 PF14803.6 gi|383319018|ref|YP_005379859.1| - 0.086 12.8 5.3 3.8 7.5 1.2 2.7 3 0 0 3 3 3 0 Nudix N-terminal CpXC PF14353.6 gi|383319018|ref|YP_005379859.1| - 0.095 12.8 0.8 0.36 10.9 0.8 1.9 1 1 0 1 1 1 0 CpXC protein ADK_lid PF05191.14 gi|383319018|ref|YP_005379859.1| - 0.11 12.6 0.9 2.6 8.1 0.0 2.9 3 0 0 3 3 2 0 Adenylate kinase, active site lid zinc_ribbon_4 PF13717.6 gi|383319018|ref|YP_005379859.1| - 0.21 11.5 1.2 3.7 7.5 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-C2H2_12 PF18112.1 gi|383319018|ref|YP_005379859.1| - 0.22 12.0 5.4 0.37 11.3 0.2 3.1 2 1 1 3 3 3 0 Autophagy receptor zinc finger-C2H2 domain zf-H2C2_2 PF13465.6 gi|383319018|ref|YP_005379859.1| - 0.28 11.7 3.3 15 6.2 1.3 2.6 2 0 0 2 2 2 0 Zinc-finger double domain TPR_6 PF13174.6 gi|383319018|ref|YP_005379859.1| - 2.8 8.8 6.5 1.5 9.7 0.2 3.0 3 1 0 3 3 2 0 Tetratricopeptide repeat SAICAR_synt PF01259.18 gi|383319020|ref|YP_005379861.1| - 4.7e-60 203.3 0.3 6.2e-60 202.9 0.3 1.2 1 0 0 1 1 1 1 SAICAR synthetase ACT_7 PF13840.6 gi|383319020|ref|YP_005379861.1| - 0.075 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 ACT domain Thg1 PF04446.12 gi|383319021|ref|YP_005379862.1| - 6.5e-19 68.2 0.0 8.3e-19 67.8 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|383319021|ref|YP_005379862.1| - 2.7e-09 37.2 0.0 4.1e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain MFS_1 PF07690.16 gi|383319022|ref|YP_005379863.1| - 1.8e-46 158.7 50.4 2.5e-27 95.7 29.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|383319022|ref|YP_005379863.1| - 1.7e-07 30.4 29.1 7.7e-06 24.9 5.9 2.4 2 1 0 2 2 2 2 LacY proton/sugar symporter MFS_3 PF05977.13 gi|383319022|ref|YP_005379863.1| - 0.00065 18.2 13.6 0.00065 18.2 13.6 2.3 2 1 0 2 2 2 2 Transmembrane secretion effector PRC PF05239.16 gi|383319023|ref|YP_005379864.1| - 3.3e-14 52.7 0.5 3.9e-14 52.5 0.5 1.1 1 0 0 1 1 1 1 PRC-barrel domain CBS PF00571.28 gi|383319024|ref|YP_005379865.1| - 7.9e-25 87.1 4.0 1.2e-12 48.1 0.6 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|383319024|ref|YP_005379865.1| - 1.1e-10 41.3 16.0 1.1e-07 31.4 0.4 3.4 2 1 1 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|383319024|ref|YP_005379865.1| - 1.5e-05 24.7 6.1 1.5e-05 24.7 6.1 1.9 2 0 0 2 2 2 1 Peptidase M50B-like TraB PF01963.17 gi|383319025|ref|YP_005379866.1| - 1e-33 117.4 0.1 1.5e-33 116.8 0.1 1.2 1 0 0 1 1 1 1 TraB family Rft-1 PF04506.13 gi|383319025|ref|YP_005379866.1| - 0.26 10.0 2.8 0.42 9.3 2.8 1.3 1 0 0 1 1 1 0 Rft protein ABC2_membrane_3 PF12698.7 gi|383319025|ref|YP_005379866.1| - 0.61 9.1 8.6 1.3 8.1 8.6 1.5 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4655 PF15548.6 gi|383319026|ref|YP_005379867.1| - 3.4e-05 23.0 7.4 0.098 11.6 1.1 2.8 1 1 2 3 3 3 3 Domain of unknown function (DUF4655) MgtE_N PF03448.17 gi|383319026|ref|YP_005379867.1| - 0.25 12.0 22.1 2.3 8.8 5.3 2.8 1 1 0 2 2 2 0 MgtE intracellular N domain CAT_RBD PF03123.15 gi|383319026|ref|YP_005379867.1| - 5.1 7.1 28.5 41 4.2 0.0 8.7 1 1 11 12 12 12 0 CAT RNA binding domain DUF981 PF06168.11 gi|383319029|ref|YP_005379870.1| - 0.32 10.9 74.1 1.8e+04 -25.3 74.1 4.2 1 1 0 1 1 1 0 Protein of unknown function (DUF981) Ycf66_N PF07444.11 gi|383319029|ref|YP_005379870.1| - 9.6 6.4 52.1 1.8e+04 -40.3 52.1 9.4 1 1 0 1 1 1 0 Ycf66 protein N-terminus Rad10 PF03834.14 gi|383319030|ref|YP_005379871.1| - 0.03 14.3 0.1 0.032 14.2 0.1 1.1 1 0 0 1 1 1 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) ATPase PF06745.13 gi|383319031|ref|YP_005379872.1| - 5.8e-36 124.0 0.0 3.8e-35 121.3 0.0 2.1 2 1 0 2 2 2 1 KaiC RecA PF00154.21 gi|383319031|ref|YP_005379872.1| - 1.7e-08 34.3 0.3 6.1e-07 29.2 0.0 2.2 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|383319031|ref|YP_005379872.1| - 5.7e-07 29.3 0.1 8.1e-05 22.3 0.0 2.8 3 0 0 3 3 3 1 AAA domain Rad51 PF08423.11 gi|383319031|ref|YP_005379872.1| - 0.00054 19.3 0.3 0.0021 17.4 0.0 1.9 2 0 0 2 2 2 1 Rad51 DnaB_C PF03796.15 gi|383319031|ref|YP_005379872.1| - 0.00066 19.1 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|383319031|ref|YP_005379872.1| - 0.00069 20.0 0.0 0.0012 19.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|383319031|ref|YP_005379872.1| - 0.0019 18.0 0.0 0.0042 16.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|383319031|ref|YP_005379872.1| - 0.0025 17.6 0.0 0.0049 16.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|383319031|ref|YP_005379872.1| - 0.0041 17.4 0.0 0.0076 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|383319031|ref|YP_005379872.1| - 0.011 15.0 1.4 0.016 14.4 1.4 1.2 1 0 0 1 1 1 0 PAXNEB protein GvpD PF07088.11 gi|383319031|ref|YP_005379872.1| - 0.011 14.4 0.0 0.021 13.5 0.0 1.4 1 0 0 1 1 1 0 GvpD gas vesicle protein DUF2075 PF09848.9 gi|383319031|ref|YP_005379872.1| - 0.012 14.9 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 gi|383319031|ref|YP_005379872.1| - 0.025 15.0 0.0 0.052 14.0 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|383319031|ref|YP_005379872.1| - 0.025 14.5 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ResIII PF04851.15 gi|383319031|ref|YP_005379872.1| - 0.052 13.5 0.0 0.079 13.0 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Zot PF05707.12 gi|383319031|ref|YP_005379872.1| - 0.061 13.0 0.0 0.096 12.3 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) NACHT PF05729.12 gi|383319031|ref|YP_005379872.1| - 0.064 13.2 0.0 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 NACHT domain T2SSE PF00437.20 gi|383319031|ref|YP_005379872.1| - 0.068 12.2 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DEAD PF00270.29 gi|383319031|ref|YP_005379872.1| - 0.082 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase ATP-synt_ab PF00006.25 gi|383319031|ref|YP_005379872.1| - 0.084 12.5 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain cobW PF02492.19 gi|383319031|ref|YP_005379872.1| - 0.099 12.2 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_11 PF13086.6 gi|383319031|ref|YP_005379872.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|383319031|ref|YP_005379872.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA12 PF10443.9 gi|383319031|ref|YP_005379872.1| - 0.23 10.2 0.0 0.32 9.7 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein ATPase PF06745.13 gi|383319032|ref|YP_005379873.1| - 1.4e-28 99.9 0.0 1.5e-28 99.7 0.0 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|383319032|ref|YP_005379873.1| - 1.3e-14 54.1 0.0 3.6e-10 39.5 0.0 2.0 2 0 0 2 2 2 2 PAXNEB protein MEDS PF14417.6 gi|383319032|ref|YP_005379873.1| - 0.00031 20.6 0.0 0.00074 19.4 0.0 1.8 1 1 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Toxin-deaminase PF14424.6 gi|383319032|ref|YP_005379873.1| - 0.013 15.6 0.1 0.021 14.9 0.1 1.3 1 0 0 1 1 1 0 The BURPS668_1122 family of deaminases GvpD PF07088.11 gi|383319032|ref|YP_005379873.1| - 0.017 13.8 0.0 2.6 6.6 0.0 2.2 2 1 0 2 2 2 0 GvpD gas vesicle protein TPR_11 PF13414.6 gi|383319033|ref|YP_005379874.1| - 7.9e-58 191.9 9.8 2e-11 43.4 0.0 8.9 2 2 7 9 9 9 7 TPR repeat TPR_2 PF07719.17 gi|383319033|ref|YP_005379874.1| - 7.6e-47 153.7 13.9 2e-06 27.4 0.0 9.8 9 1 1 10 10 10 8 Tetratricopeptide repeat TPR_1 PF00515.28 gi|383319033|ref|YP_005379874.1| - 1.2e-45 151.5 9.3 7.9e-08 31.8 0.0 9.5 9 1 1 10 10 10 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|383319033|ref|YP_005379874.1| - 1.7e-41 137.7 2.3 3.3e-05 24.0 0.0 8.3 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|383319033|ref|YP_005379874.1| - 6.1e-39 132.4 19.2 5.1e-11 43.0 0.0 6.4 4 2 3 7 7 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|383319033|ref|YP_005379874.1| - 2.2e-31 105.4 5.5 0.0002 21.3 0.0 9.4 10 0 0 10 10 10 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|383319033|ref|YP_005379874.1| - 8.9e-28 94.6 12.0 8.3e-05 23.1 0.1 7.7 3 3 5 8 8 7 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|383319033|ref|YP_005379874.1| - 4.9e-21 75.0 7.7 5.4e-08 33.2 0.1 5.9 2 2 6 8 8 8 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|383319033|ref|YP_005379874.1| - 3.8e-18 65.4 10.3 1.6e-05 25.0 0.1 5.5 2 2 1 5 5 5 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|383319033|ref|YP_005379874.1| - 1.1e-15 57.7 12.4 0.004 17.4 0.7 6.7 2 2 4 6 6 6 5 Tetratricopeptide repeat TPR_20 PF14561.6 gi|383319033|ref|YP_005379874.1| - 4.4e-14 52.6 1.5 5.3e-05 23.5 0.0 4.4 2 2 2 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|383319033|ref|YP_005379874.1| - 1.8e-13 50.2 0.4 0.037 14.7 0.0 7.0 8 0 0 8 8 6 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383319033|ref|YP_005379874.1| - 3e-12 45.6 1.0 0.065 13.3 0.0 7.1 7 2 0 7 7 7 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|383319033|ref|YP_005379874.1| - 4.3e-07 30.0 0.2 0.042 14.1 0.0 3.8 4 0 0 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 PknG_TPR PF16918.5 gi|383319033|ref|YP_005379874.1| - 3.6e-06 26.0 0.3 0.00055 18.8 0.1 2.1 2 0 0 2 2 2 2 Protein kinase G tetratricopeptide repeat BTAD PF03704.17 gi|383319033|ref|YP_005379874.1| - 3.8e-06 27.4 6.3 0.11 12.9 0.0 4.8 2 2 1 3 3 3 2 Bacterial transcriptional activator domain TPR_10 PF13374.6 gi|383319033|ref|YP_005379874.1| - 0.00013 21.7 12.0 6.9 6.7 0.1 6.8 7 0 0 7 7 6 0 Tetratricopeptide repeat RPN7 PF10602.9 gi|383319033|ref|YP_005379874.1| - 0.0034 17.1 0.6 0.23 11.1 0.1 3.4 2 1 2 5 5 5 1 26S proteasome subunit RPN7 TPR_21 PF09976.9 gi|383319033|ref|YP_005379874.1| - 0.0088 15.8 4.3 0.99 9.1 0.3 3.9 3 2 0 3 3 3 1 Tetratricopeptide repeat-like domain PPR PF01535.20 gi|383319033|ref|YP_005379874.1| - 0.013 15.7 0.2 27 5.3 0.0 4.5 4 0 0 4 4 4 0 PPR repeat PPR_1 PF12854.7 gi|383319033|ref|YP_005379874.1| - 0.015 15.0 1.6 9.2 6.1 0.0 4.2 4 0 0 4 4 4 0 PPR repeat NARP1 PF12569.8 gi|383319033|ref|YP_005379874.1| - 0.025 13.5 0.2 3.1 6.6 0.0 2.9 2 1 1 3 3 3 0 NMDA receptor-regulated protein 1 TOM20_plant PF06552.12 gi|383319033|ref|YP_005379874.1| - 0.036 13.8 0.2 3.1 7.5 0.0 3.4 1 1 3 4 4 4 0 Plant specific mitochondrial import receptor subunit TOM20 FAT PF02259.23 gi|383319033|ref|YP_005379874.1| - 0.055 12.7 0.0 0.2 10.8 0.0 2.1 1 1 0 1 1 1 0 FAT domain Cas_Csd1 PF09709.10 gi|383319033|ref|YP_005379874.1| - 0.12 11.1 0.0 0.19 10.4 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csd1) Exonuc_VII_S PF02609.16 gi|383319033|ref|YP_005379874.1| - 0.22 11.6 4.2 96 3.2 0.0 5.1 6 0 0 6 6 5 0 Exonuclease VII small subunit YfdX PF10938.8 gi|383319033|ref|YP_005379874.1| - 0.52 10.2 3.2 0.71 9.8 0.5 2.6 3 0 0 3 3 3 0 YfdX protein Lactamase_B_2 PF12706.7 gi|383319034|ref|YP_005379875.1| - 3.9e-21 75.5 0.0 2.6e-20 72.8 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|383319034|ref|YP_005379875.1| - 1.8e-10 41.2 0.9 6.6e-10 39.3 0.9 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|383319034|ref|YP_005379875.1| - 0.058 13.3 0.0 0.27 11.1 0.0 1.9 1 1 0 1 1 1 0 Beta-lactamase superfamily domain HAD_2 PF13419.6 gi|383319035|ref|YP_005379876.1| - 2.2e-24 86.5 0.0 3.8e-22 79.2 0.0 2.1 1 1 1 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|383319035|ref|YP_005379876.1| - 2.5e-12 47.5 0.0 3.8e-12 46.9 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|383319035|ref|YP_005379876.1| - 6.9e-12 45.3 0.0 1.3e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.18 gi|383319035|ref|YP_005379876.1| - 0.03 14.1 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 NLI interacting factor-like phosphatase APH PF01636.23 gi|383319036|ref|YP_005379877.1| - 3.7e-05 23.8 0.0 5.4e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family ATPase PF06745.13 gi|383319037|ref|YP_005379878.1| - 1.4e-46 158.7 0.0 1.8e-46 158.4 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|383319037|ref|YP_005379878.1| - 0.0057 16.2 0.0 0.007 16.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|383319037|ref|YP_005379878.1| - 0.016 14.5 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.11 gi|383319037|ref|YP_005379878.1| - 0.022 14.0 0.1 0.077 12.2 0.0 1.8 2 0 0 2 2 2 0 Rad51 RecA PF00154.21 gi|383319037|ref|YP_005379878.1| - 0.05 13.1 0.3 0.13 11.8 0.3 1.8 1 1 0 1 1 1 0 recA bacterial DNA recombination protein AAA_16 PF13191.6 gi|383319037|ref|YP_005379878.1| - 0.059 13.8 0.0 0.095 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|383319037|ref|YP_005379878.1| - 0.11 13.0 0.1 0.19 12.3 0.1 1.5 1 0 0 1 1 1 0 ABC transporter DnaB_C PF03796.15 gi|383319037|ref|YP_005379878.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_29 PF13555.6 gi|383319037|ref|YP_005379878.1| - 0.12 12.1 0.1 0.24 11.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain GvpD PF07088.11 gi|383319037|ref|YP_005379878.1| - 0.14 10.8 0.0 0.21 10.2 0.0 1.3 1 1 0 1 1 1 0 GvpD gas vesicle protein NACHT PF05729.12 gi|383319037|ref|YP_005379878.1| - 0.18 11.7 0.0 0.23 11.4 0.0 1.4 1 1 0 1 1 1 0 NACHT domain Flavodoxin_5 PF12724.7 gi|383319038|ref|YP_005379879.1| - 5.6e-17 62.3 0.0 7.3e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|383319038|ref|YP_005379879.1| - 4.9e-05 23.1 0.0 7.3e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|383319038|ref|YP_005379879.1| - 0.00016 21.9 0.0 0.00023 21.4 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin FMN_red PF03358.15 gi|383319038|ref|YP_005379879.1| - 0.00051 19.8 0.0 0.032 14.0 0.0 2.2 1 1 1 2 2 2 1 NADPH-dependent FMN reductase dCMP_cyt_deam_1 PF00383.23 gi|383319039|ref|YP_005379880.1| - 4.2e-30 103.6 2.0 6.4e-30 103.0 2.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|383319039|ref|YP_005379880.1| - 1.1e-20 73.8 0.3 1.5e-20 73.4 0.3 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|383319039|ref|YP_005379880.1| - 0.013 15.6 0.9 0.027 14.6 0.5 1.6 1 1 1 2 2 2 0 Bd3614-like deaminase APOBEC_N PF08210.11 gi|383319039|ref|YP_005379880.1| - 0.025 14.5 1.6 0.045 13.6 1.5 1.4 1 1 0 1 1 1 0 APOBEC-like N-terminal domain OTT_1508_deam PF14441.6 gi|383319039|ref|YP_005379880.1| - 0.046 13.7 0.1 0.076 13.0 0.1 1.3 1 0 0 1 1 1 0 OTT_1508-like deaminase APOBEC3 PF18771.1 gi|383319039|ref|YP_005379880.1| - 0.063 13.4 0.1 0.083 13.0 0.1 1.3 1 0 0 1 1 1 0 APOBEC3 zf-C3HC4 PF00097.25 gi|383319039|ref|YP_005379880.1| - 0.065 13.1 1.7 0.14 12.0 1.2 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) CoA_binding_2 PF13380.6 gi|383319039|ref|YP_005379880.1| - 0.081 13.4 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 CoA binding domain DS PF01916.17 gi|383319040|ref|YP_005379881.1| - 2.4e-99 332.2 0.1 2.7e-99 332.1 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase SNARE_assoc PF09335.11 gi|383319041|ref|YP_005379882.1| - 1.6e-23 83.5 6.8 1.6e-23 83.5 6.8 2.4 3 0 0 3 3 3 1 SNARE associated Golgi protein FtsX PF02687.21 gi|383319041|ref|YP_005379882.1| - 0.0079 16.6 9.4 0.38 11.2 1.5 2.9 2 1 0 2 2 2 2 FtsX-like permease family DUF3173 PF11372.8 gi|383319041|ref|YP_005379882.1| - 0.1 12.5 0.1 0.23 11.3 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3173) Metallophos_2 PF12850.7 gi|383319045|ref|YP_005379886.1| - 1.8e-07 31.5 0.0 3.5e-07 30.6 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|383319045|ref|YP_005379886.1| - 2.7e-07 31.3 0.1 5.7e-07 30.2 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.11 gi|383319045|ref|YP_005379886.1| - 0.025 12.9 0.0 0.048 12.0 0.0 1.4 2 0 0 2 2 2 0 Firmicute fructose-1,6-bisphosphatase HD PF01966.22 gi|383319046|ref|YP_005379887.1| - 3.9e-15 56.2 2.2 3.9e-15 56.2 2.2 1.6 2 0 0 2 2 2 1 HD domain Csm2_III-A PF03750.13 gi|383319046|ref|YP_005379887.1| - 0.09 13.6 0.6 0.21 12.4 0.4 1.7 2 0 0 2 2 2 0 Csm2 Type III-A HypA PF01155.19 gi|383319047|ref|YP_005379888.1| - 0.0026 17.7 3.5 0.42 10.6 0.1 2.1 2 0 0 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|383319047|ref|YP_005379888.1| - 0.0042 17.1 3.8 0.5 10.4 0.4 2.3 2 0 0 2 2 2 2 Double zinc ribbon zf-C2H2_11 PF16622.5 gi|383319047|ref|YP_005379888.1| - 0.0056 16.4 0.4 2.9 7.7 0.0 2.6 2 0 0 2 2 2 2 zinc-finger C2H2-type ADK_lid PF05191.14 gi|383319047|ref|YP_005379888.1| - 0.04 13.9 8.9 0.3 11.1 0.4 2.7 2 1 0 2 2 2 0 Adenylate kinase, active site lid Zn_Tnp_IS91 PF14319.6 gi|383319047|ref|YP_005379888.1| - 0.13 12.4 1.9 1.4 9.0 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-binding domain CpXC PF14353.6 gi|383319047|ref|YP_005379888.1| - 0.18 11.9 1.5 1.1 9.3 0.1 2.2 2 0 0 2 2 2 0 CpXC protein NMD3 PF04981.13 gi|383319047|ref|YP_005379888.1| - 0.48 9.9 5.7 10 5.5 5.7 2.2 1 1 0 1 1 1 0 NMD3 family DUF2797 PF10977.8 gi|383319047|ref|YP_005379888.1| - 0.51 10.2 3.6 7.1 6.4 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2797) zf-C2HC_2 PF13913.6 gi|383319047|ref|YP_005379888.1| - 0.82 9.6 4.9 2.1 8.4 0.4 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Spt4 PF06093.13 gi|383319047|ref|YP_005379888.1| - 1.5 9.0 5.1 0.8 9.8 0.2 2.3 2 1 1 3 3 3 0 Spt4/RpoE2 zinc finger DUF326 PF03860.16 gi|383319047|ref|YP_005379888.1| - 3.8 7.6 14.5 0.45 10.6 0.6 3.2 3 1 0 3 3 3 0 Domain of Unknown Function (DUF326) zf-C2H2_4 PF13894.6 gi|383319047|ref|YP_005379888.1| - 6.6 7.9 7.0 34 5.7 0.1 3.3 4 0 0 4 4 4 0 C2H2-type zinc finger PQQ_2 PF13360.6 gi|383319048|ref|YP_005379889.1| - 3.3e-12 46.5 0.0 1.2e-07 31.5 0.0 3.2 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|383319048|ref|YP_005379889.1| - 0.00032 21.1 25.6 0.19 12.3 0.7 7.2 6 2 2 8 8 8 3 PQQ-like domain DUF5386 PF17360.2 gi|383319048|ref|YP_005379889.1| - 0.099 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5386) PQQ PF01011.21 gi|383319048|ref|YP_005379889.1| - 0.84 9.7 14.3 10 6.3 0.0 6.3 7 1 1 8 8 8 0 PQQ enzyme repeat Glycos_transf_1 PF00534.20 gi|383319049|ref|YP_005379890.1| - 2.4e-28 98.8 0.0 5.1e-28 97.7 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383319049|ref|YP_005379890.1| - 5.9e-17 62.4 0.0 4.4e-16 59.5 0.0 2.3 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383319049|ref|YP_005379890.1| - 2.3e-06 27.7 0.1 3.9e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|383319049|ref|YP_005379890.1| - 7.2e-05 23.1 0.0 0.00016 22.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|383319049|ref|YP_005379890.1| - 0.0022 16.9 0.0 0.021 13.7 0.0 2.0 2 0 0 2 2 2 1 UDP-N-acetylglucosamine 2-epimerase DUF302 PF03625.14 gi|383319049|ref|YP_005379890.1| - 0.017 15.0 0.0 0.056 13.3 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function DUF302 DUF4417 PF14386.6 gi|383319049|ref|YP_005379890.1| - 0.054 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4417) Glycos_transf_2 PF00535.26 gi|383319050|ref|YP_005379891.1| - 4.3e-30 104.7 0.0 5.8e-30 104.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|383319050|ref|YP_005379891.1| - 4.2e-21 75.9 0.0 6.5e-21 75.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|383319050|ref|YP_005379891.1| - 6.2e-10 39.3 0.1 1.1e-09 38.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|383319050|ref|YP_005379891.1| - 6.6e-09 35.6 0.0 1.2e-08 34.8 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|383319050|ref|YP_005379891.1| - 0.044 14.3 0.0 0.081 13.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|383319051|ref|YP_005379892.1| - 2e-24 86.0 0.1 3.2e-24 85.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383319051|ref|YP_005379892.1| - 4.8e-22 78.8 0.0 8.4e-22 78.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383319051|ref|YP_005379892.1| - 4.9e-10 39.7 0.2 2.7e-09 37.3 0.2 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|383319051|ref|YP_005379892.1| - 0.0002 21.8 0.0 0.0047 17.4 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|383319052|ref|YP_005379893.1| - 1.9e-19 69.9 0.0 9.2e-19 67.6 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383319052|ref|YP_005379893.1| - 7e-14 52.4 0.0 2.5e-13 50.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|383319052|ref|YP_005379893.1| - 2e-10 40.9 0.0 3.7e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 ABC2_membrane PF01061.24 gi|383319053|ref|YP_005379894.1| - 1.2e-18 67.3 28.1 1.2e-18 67.3 28.1 1.8 2 0 0 2 2 2 1 ABC-2 type transporter Wzt_C PF14524.6 gi|383319054|ref|YP_005379895.1| - 7.9e-31 107.0 0.0 1.6e-30 106.0 0.0 1.5 1 0 0 1 1 1 1 Wzt C-terminal domain ABC_tran PF00005.27 gi|383319054|ref|YP_005379895.1| - 1.5e-25 90.3 0.7 8.4e-25 87.9 0.7 2.2 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383319054|ref|YP_005379895.1| - 3.7e-07 30.3 1.0 4.5e-05 23.4 0.7 2.5 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|383319054|ref|YP_005379895.1| - 1.5e-05 24.6 0.1 3.8e-05 23.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|383319054|ref|YP_005379895.1| - 0.00019 21.3 0.1 0.00035 20.4 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|383319054|ref|YP_005379895.1| - 0.0064 16.9 0.0 0.01 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|383319054|ref|YP_005379895.1| - 0.023 14.6 0.3 0.81 9.6 0.0 2.5 2 0 0 2 2 2 0 RsgA GTPase SMC_N PF02463.19 gi|383319054|ref|YP_005379895.1| - 0.034 13.6 2.3 0.1 12.0 0.1 2.4 2 1 1 3 3 3 0 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.15 gi|383319054|ref|YP_005379895.1| - 0.036 14.0 0.2 0.39 10.6 0.1 2.3 2 0 0 2 2 2 0 NTPase AAA PF00004.29 gi|383319054|ref|YP_005379895.1| - 0.039 14.4 0.2 0.69 10.3 0.2 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 gi|383319054|ref|YP_005379895.1| - 0.062 12.9 0.0 0.094 12.4 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.6 gi|383319054|ref|YP_005379895.1| - 0.099 13.1 8.3 0.4 11.2 8.3 2.3 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|383319054|ref|YP_005379895.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|383319054|ref|YP_005379895.1| - 0.14 11.9 0.0 0.38 10.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|383319054|ref|YP_005379895.1| - 0.14 12.7 1.3 0.24 12.0 0.2 2.1 2 1 0 2 2 2 0 AAA domain MetW PF07021.12 gi|383319055|ref|YP_005379896.1| - 4.6e-13 49.2 0.1 1.1e-12 47.9 0.1 1.6 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.6 gi|383319055|ref|YP_005379896.1| - 1.7e-09 38.2 0.5 8.3e-09 36.0 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383319055|ref|YP_005379896.1| - 1.2e-08 35.0 0.1 4.7e-08 33.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383319055|ref|YP_005379896.1| - 1.5e-08 35.2 0.0 4.8e-08 33.6 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383319055|ref|YP_005379896.1| - 1.7e-06 27.9 3.6 3.1e-06 27.1 0.1 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|383319055|ref|YP_005379896.1| - 2e-05 25.2 0.6 5.6e-05 23.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Apolipoprotein PF01442.18 gi|383319055|ref|YP_005379896.1| - 0.011 15.6 2.1 0.061 13.2 1.1 1.9 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain FtsJ PF01728.19 gi|383319055|ref|YP_005379896.1| - 0.036 14.2 0.1 0.19 11.8 0.0 2.2 2 1 0 2 2 2 0 FtsJ-like methyltransferase CMAS PF02353.20 gi|383319055|ref|YP_005379896.1| - 0.042 13.1 0.0 0.078 12.2 0.0 1.4 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase GPCR_chapero_1 PF11904.8 gi|383319055|ref|YP_005379896.1| - 0.15 11.4 1.2 0.25 10.7 1.2 1.2 1 0 0 1 1 1 0 GPCR-chaperone Methyltransf_32 PF13679.6 gi|383319055|ref|YP_005379896.1| - 0.25 11.3 2.2 2 8.4 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain Phage_sheath_1N PF17481.2 gi|383319055|ref|YP_005379896.1| - 0.26 11.8 2.0 1 9.9 2.0 2.1 1 1 0 1 1 1 0 Phage tail sheath protein beta-sandwich domain Allexi_40kDa PF05549.11 gi|383319055|ref|YP_005379896.1| - 0.85 9.1 3.8 1.6 8.2 3.8 1.5 1 0 0 1 1 1 0 Allexivirus 40kDa protein Glycos_transf_1 PF00534.20 gi|383319056|ref|YP_005379897.1| - 5.2e-30 104.2 0.0 2.7e-19 69.3 0.0 2.5 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383319056|ref|YP_005379897.1| - 2.7e-29 102.3 0.0 1.1e-18 68.0 0.0 2.8 3 0 0 3 3 3 2 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383319056|ref|YP_005379897.1| - 1.7e-08 34.6 0.0 2.2e-07 31.1 0.0 2.5 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|383319056|ref|YP_005379897.1| - 9.1e-05 22.8 0.0 0.27 11.6 0.0 2.6 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|383319057|ref|YP_005379898.1| - 1.8e-31 109.0 0.0 4e-31 107.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383319057|ref|YP_005379898.1| - 1.7e-26 93.2 0.0 4.3e-26 91.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383319057|ref|YP_005379898.1| - 2.2e-21 76.6 0.0 5e-21 75.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|383319057|ref|YP_005379898.1| - 1.1e-15 58.4 0.0 7.9e-15 55.6 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|383319057|ref|YP_005379898.1| - 9.8e-11 41.9 0.0 5.7e-08 33.0 0.0 2.6 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|383319057|ref|YP_005379898.1| - 4e-05 23.7 0.0 0.00013 22.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like DUF2325 PF10087.9 gi|383319057|ref|YP_005379898.1| - 0.032 14.3 0.3 7.2 6.8 0.0 3.3 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) PIGA PF08288.12 gi|383319057|ref|YP_005379898.1| - 0.079 13.5 0.1 0.23 12.1 0.1 1.8 1 0 0 1 1 1 0 PIGA (GPI anchor biosynthesis) DpaA_N PF16924.5 gi|383319057|ref|YP_005379898.1| - 0.14 12.2 0.0 11 6.2 0.0 3.3 4 0 0 4 4 4 0 Dipicolinate synthase subunit A N-terminal domain Epimerase PF01370.21 gi|383319058|ref|YP_005379899.1| - 8.8e-49 166.1 0.0 1.1e-48 165.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|383319058|ref|YP_005379899.1| - 1.8e-39 136.0 0.0 2.9e-39 135.4 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|383319058|ref|YP_005379899.1| - 9.5e-21 74.0 0.3 1.3e-20 73.6 0.3 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|383319058|ref|YP_005379899.1| - 5.9e-19 68.3 0.0 7.3e-19 67.9 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|383319058|ref|YP_005379899.1| - 1.7e-13 50.4 0.6 9e-12 44.7 0.6 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|383319058|ref|YP_005379899.1| - 3.3e-13 49.4 0.0 9.6e-11 41.3 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|383319058|ref|YP_005379899.1| - 3.7e-08 33.5 0.0 6.3e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|383319058|ref|YP_005379899.1| - 1.8e-05 24.3 0.0 0.0033 16.9 0.0 2.4 2 0 0 2 2 2 2 short chain dehydrogenase DapB_N PF01113.20 gi|383319058|ref|YP_005379899.1| - 0.023 14.8 0.1 0.38 10.9 0.0 2.4 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Transposase_mut PF00872.18 gi|383319059|ref|YP_005379900.1| - 2.2e-10 40.0 0.0 2.4e-10 39.8 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family N_BRCA1_IG PF16158.5 gi|383319060|ref|YP_005379901.1| - 6e-42 142.5 28.4 8.2e-08 32.9 0.4 7.5 6 1 1 7 7 7 7 Ig-like domain from next to BRCA1 gene CARDB PF07705.11 gi|383319060|ref|YP_005379901.1| - 3.1e-20 72.3 9.4 0.029 14.6 0.1 8.3 7 0 0 7 7 7 6 CARDB Peptidase_S8 PF00082.22 gi|383319060|ref|YP_005379901.1| - 3.6e-15 56.0 13.7 3.8e-14 52.7 1.6 3.1 2 1 1 3 3 3 2 Subtilase family A2M_BRD PF07703.14 gi|383319060|ref|YP_005379901.1| - 2.2e-09 37.8 0.1 0.13 12.6 0.0 6.7 6 1 0 6 6 6 2 Alpha-2-macroglobulin bait region domain DUF4832 PF16116.5 gi|383319060|ref|YP_005379901.1| - 3.9e-09 36.7 0.2 2.6 7.8 0.0 6.6 6 1 0 6 6 6 3 Domain of unknown function (DUF4832) CBM_4_9 PF02018.17 gi|383319060|ref|YP_005379901.1| - 4.8e-09 36.6 3.2 4.4 7.6 0.0 7.8 6 2 1 7 7 7 2 Carbohydrate binding domain DUF4352 PF11611.8 gi|383319060|ref|YP_005379901.1| - 2.6e-07 31.0 1.0 15 5.8 0.0 6.9 7 0 0 7 7 7 0 Domain of unknown function (DUF4352) fn3_5 PF06280.12 gi|383319060|ref|YP_005379901.1| - 0.00022 21.9 6.8 16 6.2 0.1 6.8 6 3 0 6 6 4 0 Fn3-like domain NPCBM_assoc PF10633.9 gi|383319060|ref|YP_005379901.1| - 0.00091 19.4 21.9 7.5 6.9 0.1 9.4 10 2 0 10 10 8 2 NPCBM-associated, NEW3 domain of alpha-galactosidase VanW PF04294.13 gi|383319060|ref|YP_005379901.1| - 0.0021 17.8 0.4 6 6.5 0.0 4.1 4 0 0 4 4 4 1 VanW like protein LPMO_10 PF03067.15 gi|383319060|ref|YP_005379901.1| - 0.0064 17.2 0.2 11 6.6 0.0 4.1 2 2 1 3 3 3 1 Lytic polysaccharide mono-oxygenase, cellulose-degrading DUF11 PF01345.18 gi|383319060|ref|YP_005379901.1| - 0.017 15.4 28.3 1 9.7 0.7 10.1 8 5 0 8 8 8 0 Domain of unknown function DUF11 DUF1616 PF07760.11 gi|383319060|ref|YP_005379901.1| - 0.09 12.1 0.0 13 5.0 0.0 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1616) Cu-oxidase_3 PF07732.15 gi|383319060|ref|YP_005379901.1| - 0.94 9.5 37.7 3.9 7.5 0.2 7.8 6 1 0 7 7 7 0 Multicopper oxidase BsuPI PF12690.7 gi|383319060|ref|YP_005379901.1| - 2.4 8.2 19.8 7.7 6.6 0.1 8.1 11 0 0 11 11 11 0 Intracellular proteinase inhibitor DUF772 PF05598.11 gi|383319061|ref|YP_005379902.1| - 2.5e-20 72.3 0.0 4.4e-20 71.5 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|383319061|ref|YP_005379902.1| - 3.3e-16 59.6 0.7 8.3e-16 58.3 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|383319061|ref|YP_005379902.1| - 4.2e-06 26.5 0.3 0.00019 21.1 0.0 2.4 1 1 1 2 2 2 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.6 gi|383319061|ref|YP_005379902.1| - 0.0015 18.8 0.8 0.0021 18.3 0.1 1.6 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|383319061|ref|YP_005379902.1| - 0.09 12.8 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain Pox_LP_H2 PF03356.15 gi|383319061|ref|YP_005379902.1| - 0.15 11.9 1.2 1.2 9.0 0.1 2.6 3 0 0 3 3 3 0 Viral late protein H2 DDE_Tnp_1 PF01609.21 gi|383319062|ref|YP_005379903.1| - 1.4e-23 83.7 0.2 2e-23 83.2 0.2 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_5 PF13737.6 gi|383319062|ref|YP_005379903.1| - 7.8e-20 71.3 0.0 2.7e-19 69.5 0.0 1.9 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|383319062|ref|YP_005379903.1| - 0.055 13.8 0.3 1.2 9.6 0.3 2.3 1 1 0 1 1 1 0 Transposase DDE domain Methyltransf_11 PF08241.12 gi|383319063|ref|YP_005379904.1| - 4.8e-21 75.2 0.0 7e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383319063|ref|YP_005379904.1| - 2.6e-19 69.7 0.0 3.9e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|383319063|ref|YP_005379904.1| - 4.9e-16 59.3 0.0 8.9e-16 58.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|383319063|ref|YP_005379904.1| - 6.9e-14 51.7 0.0 9.1e-14 51.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|383319063|ref|YP_005379904.1| - 1.4e-13 50.9 0.0 2e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383319063|ref|YP_005379904.1| - 1.6e-12 47.6 0.0 2.1e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF938 PF06080.12 gi|383319063|ref|YP_005379904.1| - 2.4e-05 24.2 0.0 6.6e-05 22.8 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_33 PF10017.9 gi|383319063|ref|YP_005379904.1| - 5.7e-05 22.4 0.0 6.5e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent Methyltransf_9 PF08003.11 gi|383319063|ref|YP_005379904.1| - 0.0011 17.9 0.0 0.0014 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PCMT PF01135.19 gi|383319063|ref|YP_005379904.1| - 0.0013 18.5 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|383319063|ref|YP_005379904.1| - 0.0016 18.1 0.0 0.0021 17.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|383319063|ref|YP_005379904.1| - 0.0021 17.4 0.0 0.0029 16.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 gi|383319063|ref|YP_005379904.1| - 0.0098 15.2 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_5 PF01795.19 gi|383319063|ref|YP_005379904.1| - 0.032 13.8 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 MraW methylase family Glycos_transf_1 PF00534.20 gi|383319064|ref|YP_005379905.1| - 2.7e-40 137.7 0.0 4.6e-40 137.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383319064|ref|YP_005379905.1| - 7.9e-26 91.1 0.0 2.4e-25 89.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383319064|ref|YP_005379905.1| - 5.9e-17 62.2 0.0 1.3e-16 61.1 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|383319064|ref|YP_005379905.1| - 1.6e-12 48.1 0.0 2.2e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|383319064|ref|YP_005379905.1| - 1.3e-11 44.7 0.0 2.4e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|383319064|ref|YP_005379905.1| - 5.4e-10 39.5 0.0 1.1e-09 38.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 PolyA_pol_RNAbd PF12627.7 gi|383319064|ref|YP_005379905.1| - 0.074 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Probable RNA and SrmB- binding site of polymerase A Glycos_transf_2 PF00535.26 gi|383319065|ref|YP_005379906.1| - 5.5e-36 123.9 0.1 8.7e-36 123.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|383319065|ref|YP_005379906.1| - 1.3e-07 31.3 0.1 4e-07 29.8 0.1 1.7 1 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|383319065|ref|YP_005379906.1| - 2.8e-06 27.4 0.0 4.1e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 CAP59_mtransfer PF11735.8 gi|383319065|ref|YP_005379906.1| - 0.14 11.9 0.0 1.8 8.2 0.0 2.0 1 1 0 2 2 2 0 Cryptococcal mannosyltransferase 1 LPG_synthase_TM PF03706.13 gi|383319066|ref|YP_005379907.1| - 1.2e-30 107.1 41.6 1.5e-30 106.8 41.6 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Epimerase PF01370.21 gi|383319067|ref|YP_005379908.1| - 9.1e-62 208.7 0.0 3.2e-61 206.9 0.0 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|383319067|ref|YP_005379908.1| - 8.1e-59 199.7 0.0 3.2e-58 197.7 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|383319067|ref|YP_005379908.1| - 1.2e-27 96.6 0.0 1.6e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|383319067|ref|YP_005379908.1| - 1.2e-17 64.0 0.0 6.7e-17 61.5 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|383319067|ref|YP_005379908.1| - 1.2e-13 50.8 0.0 1.7e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|383319067|ref|YP_005379908.1| - 3.8e-11 42.7 0.2 5.5e-10 38.8 0.2 2.4 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|383319067|ref|YP_005379908.1| - 2.4e-09 37.3 0.0 9.3e-09 35.4 0.0 2.0 2 1 0 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 gi|383319067|ref|YP_005379908.1| - 2.7e-05 23.9 0.0 3.8e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|383319067|ref|YP_005379908.1| - 0.00076 19.0 0.0 0.0052 16.3 0.0 2.4 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|383319067|ref|YP_005379908.1| - 0.022 14.6 0.0 0.15 12.0 0.0 2.2 2 0 0 2 2 2 0 KR domain adh_short_C2 PF13561.6 gi|383319067|ref|YP_005379908.1| - 0.044 13.3 0.0 1.8 8.1 0.0 2.5 2 1 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase UDPG_MGDP_dh_N PF03721.14 gi|383319067|ref|YP_005379908.1| - 0.1 12.2 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GDP_Man_Dehyd PF16363.5 gi|383319068|ref|YP_005379909.1| - 5.7e-59 200.2 0.0 3.3e-58 197.7 0.0 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|383319068|ref|YP_005379909.1| - 3.8e-58 196.8 0.1 4.5e-58 196.5 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|383319068|ref|YP_005379909.1| - 2.8e-23 82.3 0.1 5.5e-23 81.4 0.1 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|383319068|ref|YP_005379909.1| - 3.2e-19 69.2 0.6 3.6e-17 62.4 0.6 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|383319068|ref|YP_005379909.1| - 5.1e-19 68.5 0.0 6.5e-19 68.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|383319068|ref|YP_005379909.1| - 4e-16 58.9 2.5 7.1e-13 48.3 0.1 2.5 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|383319068|ref|YP_005379909.1| - 7.2e-15 55.4 0.0 9.2e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|383319068|ref|YP_005379909.1| - 0.00011 21.8 0.5 0.00023 20.8 0.5 1.6 1 1 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|383319068|ref|YP_005379909.1| - 0.0019 18.1 1.4 0.0053 16.7 0.7 1.9 1 1 1 2 2 2 1 KR domain adh_short PF00106.25 gi|383319068|ref|YP_005379909.1| - 0.012 15.0 2.2 0.11 12.0 0.6 2.5 2 1 1 3 3 3 0 short chain dehydrogenase GDP_Man_Dehyd PF16363.5 gi|383319069|ref|YP_005379910.1| - 2.8e-134 447.7 0.0 3.3e-134 447.5 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|383319069|ref|YP_005379910.1| - 1.7e-70 237.3 0.0 2.1e-70 236.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|383319069|ref|YP_005379910.1| - 9.8e-11 41.3 0.0 1.4e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|383319069|ref|YP_005379910.1| - 1.2e-06 28.3 0.0 2.4e-06 27.3 0.0 1.5 2 0 0 2 2 2 1 NmrA-like family NAD_binding_10 PF13460.6 gi|383319069|ref|YP_005379910.1| - 0.00013 21.9 0.0 0.00021 21.2 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|383319069|ref|YP_005379910.1| - 0.0035 16.8 0.0 0.0063 16.0 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_4 PF07993.12 gi|383319069|ref|YP_005379910.1| - 0.054 12.7 0.0 0.1 11.8 0.0 1.5 1 0 0 1 1 1 0 Male sterility protein Polysacc_synt_2 PF02719.15 gi|383319069|ref|YP_005379910.1| - 0.074 12.2 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Glycos_transf_2 PF00535.26 gi|383319070|ref|YP_005379911.1| - 2.7e-24 85.9 0.0 3.4e-24 85.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|383319070|ref|YP_005379911.1| - 1.1e-10 41.8 0.0 1.4e-10 41.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|383319070|ref|YP_005379911.1| - 0.03 13.8 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|383319070|ref|YP_005379911.1| - 0.03 13.8 0.0 0.08 12.4 0.0 1.7 2 1 0 2 2 2 0 Glycosyltransferase like family 2 DUF3368 PF11848.8 gi|383319072|ref|YP_005379913.1| - 5e-05 23.0 0.3 0.00038 20.2 0.2 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) PIN_6 PF17146.4 gi|383319072|ref|YP_005379913.1| - 0.02 15.4 0.0 0.033 14.7 0.0 1.4 1 0 0 1 1 1 0 PIN domain of ribonuclease UPF0175 PF03683.13 gi|383319073|ref|YP_005379914.1| - 1.5e-08 34.2 0.0 3.2e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HTH_45 PF14947.6 gi|383319073|ref|YP_005379914.1| - 0.0009 19.2 0.2 0.0009 19.2 0.2 2.5 3 1 0 3 3 3 1 Winged helix-turn-helix Nab2 PF11517.8 gi|383319073|ref|YP_005379914.1| - 0.027 14.7 0.4 1.5 9.1 0.1 2.4 2 1 0 2 2 2 0 Nuclear abundant poly(A) RNA-bind protein 2 (Nab2) PQQ_3 PF13570.6 gi|383319074|ref|YP_005379915.1| - 4e-61 202.1 33.5 4.7e-09 36.5 0.3 8.6 9 0 0 9 9 9 8 PQQ-like domain PQQ PF01011.21 gi|383319074|ref|YP_005379915.1| - 2.7e-43 143.9 16.0 1.5e-11 43.6 0.2 7.8 8 0 0 8 8 8 7 PQQ enzyme repeat PQQ_2 PF13360.6 gi|383319074|ref|YP_005379915.1| - 2.1e-42 145.3 0.7 1.7e-16 60.6 0.2 4.2 1 1 3 4 4 4 4 PQQ-like domain WD40_like PF17005.5 gi|383319074|ref|YP_005379915.1| - 6.9e-05 22.3 0.0 0.39 10.0 0.0 3.1 2 1 1 3 3 3 2 WD40-like domain Reg_prop PF07494.11 gi|383319074|ref|YP_005379915.1| - 0.024 14.8 3.2 41 4.9 0.0 5.4 7 0 0 7 7 7 0 Two component regulator propeller Herpes_UL25 PF01499.16 gi|383319075|ref|YP_005379916.1| - 0.014 13.9 0.8 0.016 13.8 0.8 1.1 1 0 0 1 1 1 0 Herpesvirus UL25 family AAA_16 PF13191.6 gi|383319076|ref|YP_005379917.1| - 2.5e-10 41.0 0.1 3.8e-08 33.9 0.1 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|383319076|ref|YP_005379917.1| - 2.8e-09 37.4 0.0 5.3e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|383319076|ref|YP_005379917.1| - 7.6e-08 32.2 0.1 3.3e-07 30.2 0.1 2.1 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain NACHT PF05729.12 gi|383319076|ref|YP_005379917.1| - 0.00098 19.1 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain TIP49_C PF17856.1 gi|383319076|ref|YP_005379917.1| - 0.0048 17.0 0.1 0.012 15.7 0.1 1.7 1 0 0 1 1 1 1 TIP49 AAA-lid domain AAA PF00004.29 gi|383319076|ref|YP_005379917.1| - 0.0051 17.2 0.0 0.014 15.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|383319076|ref|YP_005379917.1| - 0.017 15.0 0.1 0.073 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|383319076|ref|YP_005379917.1| - 0.02 14.4 0.0 0.12 11.8 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|383319076|ref|YP_005379917.1| - 0.025 13.8 0.0 0.038 13.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.13 gi|383319076|ref|YP_005379917.1| - 0.048 12.8 0.0 0.22 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) KAP_NTPase PF07693.14 gi|383319076|ref|YP_005379917.1| - 0.11 11.7 0.0 0.93 8.7 0.0 1.9 1 1 1 2 2 2 0 KAP family P-loop domain Sigma54_activ_2 PF14532.6 gi|383319076|ref|YP_005379917.1| - 0.15 12.1 0.2 9.6 6.3 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain Mannosyl_trans2 PF04188.13 gi|383319077|ref|YP_005379918.1| - 1.2e-08 34.8 4.7 3e-08 33.4 4.6 1.7 1 1 0 1 1 1 1 Mannosyltransferase (PIG-V) PMT_2 PF13231.6 gi|383319077|ref|YP_005379918.1| - 2e-05 24.8 7.5 2e-05 24.8 7.5 3.1 2 2 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Kei1 PF08552.11 gi|383319077|ref|YP_005379918.1| - 3.3 7.6 11.8 1.2 9.0 5.3 2.6 2 1 0 2 2 2 0 Inositolphosphorylceramide synthase subunit Kei1 SWIM PF04434.17 gi|383319078|ref|YP_005379919.1| - 0.00013 21.6 0.1 0.00018 21.1 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger NIF3 PF01784.18 gi|383319079|ref|YP_005379920.1| - 2.3e-48 165.0 0.0 2.8e-48 164.7 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Rad51 PF08423.11 gi|383319080|ref|YP_005379921.1| - 2e-85 286.1 0.0 2.5e-85 285.8 0.0 1.0 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|383319080|ref|YP_005379921.1| - 1.9e-12 47.6 1.2 5.2e-12 46.2 1.2 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|383319080|ref|YP_005379921.1| - 3.6e-12 46.3 1.2 2.1e-05 24.1 0.0 2.3 3 0 0 3 3 3 2 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|383319080|ref|YP_005379921.1| - 3.1e-08 33.4 0.0 4.9e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|383319080|ref|YP_005379921.1| - 1.9e-07 30.7 0.0 2.9e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH PF00633.23 gi|383319080|ref|YP_005379921.1| - 4.7e-07 29.4 2.2 0.013 15.3 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|383319080|ref|YP_005379921.1| - 1.6e-06 28.1 0.1 4.4e-06 26.7 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|383319080|ref|YP_005379921.1| - 0.0001 22.5 0.0 0.0002 21.5 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|383319080|ref|YP_005379921.1| - 0.0012 18.6 0.1 0.0066 16.3 0.0 2.3 2 1 1 3 3 3 1 Fingers domain of DNA polymerase lambda CobU PF02283.16 gi|383319080|ref|YP_005379921.1| - 0.0013 18.3 0.0 0.015 14.9 0.0 2.1 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase IMS_HHH PF11798.8 gi|383319080|ref|YP_005379921.1| - 0.002 18.4 0.0 0.009 16.3 0.0 2.2 2 0 0 2 2 2 1 IMS family HHH motif AAA PF00004.29 gi|383319080|ref|YP_005379921.1| - 0.006 17.0 0.1 0.022 15.2 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|383319080|ref|YP_005379921.1| - 0.0072 16.1 0.0 0.016 14.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|383319080|ref|YP_005379921.1| - 0.025 15.1 0.0 0.084 13.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|383319080|ref|YP_005379921.1| - 0.031 14.5 0.0 0.057 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain HHH_8 PF14716.6 gi|383319080|ref|YP_005379921.1| - 0.037 14.4 0.3 1.3 9.4 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix domain Zeta_toxin PF06414.12 gi|383319080|ref|YP_005379921.1| - 0.055 12.8 0.0 18 4.5 0.0 2.9 3 0 0 3 3 3 0 Zeta toxin RNA_pol_RpbG PF16992.5 gi|383319080|ref|YP_005379921.1| - 0.059 13.4 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase, subunit G DUF4332 PF14229.6 gi|383319080|ref|YP_005379921.1| - 0.11 12.7 0.0 0.27 11.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) FMN_red PF03358.15 gi|383319082|ref|YP_005379923.1| - 2.2e-34 118.4 0.0 2.9e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|383319082|ref|YP_005379923.1| - 0.0012 18.5 0.0 0.0017 18.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Flavoprotein PF02441.19 gi|383319083|ref|YP_005379924.1| - 4.1e-22 78.6 0.0 6.4e-21 74.7 0.0 2.0 2 0 0 2 2 2 2 Flavoprotein Usp PF00582.26 gi|383319084|ref|YP_005379925.1| - 9.7e-09 35.9 0.0 6.5e-07 29.9 0.0 2.7 2 1 0 2 2 2 2 Universal stress protein family Hydrolase_3 PF08282.12 gi|383319085|ref|YP_005379926.1| - 3.2e-31 109.0 0.0 9.1e-21 74.7 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|383319085|ref|YP_005379926.1| - 2.6e-09 37.7 0.6 0.00018 21.8 0.1 2.5 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|383319085|ref|YP_005379926.1| - 5.2e-06 26.2 0.0 4.2e-05 23.2 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|383319085|ref|YP_005379926.1| - 0.0015 19.0 4.0 3 8.2 0.0 3.5 2 1 1 4 4 4 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|383319085|ref|YP_005379926.1| - 0.083 12.0 0.0 1.1 8.4 0.0 2.1 2 0 0 2 2 2 0 Trehalose-phosphatase Pox_MCEL PF03291.16 gi|383319085|ref|YP_005379926.1| - 0.11 11.6 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme N_BRCA1_IG PF16158.5 gi|383319086|ref|YP_005379927.1| - 3.8e-08 34.0 0.2 0.0025 18.5 0.0 2.8 2 1 1 3 3 3 2 Ig-like domain from next to BRCA1 gene Big_7 PF17957.1 gi|383319086|ref|YP_005379927.1| - 0.0022 18.7 0.2 0.07 13.9 0.0 3.0 2 0 0 2 2 2 1 Bacterial Ig domain CopC PF04234.12 gi|383319086|ref|YP_005379927.1| - 0.075 14.1 0.1 27 5.9 0.0 2.8 2 1 0 2 2 2 0 CopC domain DUF772 PF05598.11 gi|383319089|ref|YP_005379930.1| - 1.8e-20 72.7 0.0 3.4e-20 71.8 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|383319089|ref|YP_005379930.1| - 2e-15 57.0 0.9 5.2e-15 55.7 0.9 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|383319089|ref|YP_005379930.1| - 1.4e-05 24.8 0.3 0.00054 19.7 0.0 2.4 1 1 1 2 2 2 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.6 gi|383319089|ref|YP_005379930.1| - 0.0034 17.6 1.0 0.0042 17.3 0.1 1.6 2 0 0 2 2 2 1 Transposase DDE domain Sigma_reg_N PF13800.6 gi|383319090|ref|YP_005379931.1| - 4.3 7.7 10.1 1 9.7 6.4 1.9 3 0 0 3 3 3 0 Sigma factor regulator N-terminal Pur_DNA_glyco PF02245.16 gi|383319092|ref|YP_005379933.1| - 2.1e-72 242.2 0.0 2.6e-72 241.9 0.0 1.1 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) NTPase_I-T PF01931.18 gi|383319093|ref|YP_005379934.1| - 6e-55 185.5 0.0 6.7e-55 185.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 SCAB-Ig PF16709.5 gi|383319093|ref|YP_005379934.1| - 0.18 11.9 0.0 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 Ig domain of plant-specific actin-binding protein CTP_transf_like PF01467.26 gi|383319094|ref|YP_005379935.1| - 1.4e-12 48.0 0.0 1.6e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|383319094|ref|YP_005379935.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 FAD synthetase HIGH_NTase1 PF05636.11 gi|383319094|ref|YP_005379935.1| - 0.25 10.5 0.0 0.33 10.1 0.0 1.1 1 0 0 1 1 1 0 HIGH Nucleotidyl Transferase Hexapep PF00132.24 gi|383319095|ref|YP_005379936.1| - 2.2e-17 62.0 14.4 5.5e-10 38.6 2.1 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|383319095|ref|YP_005379936.1| - 1.6e-05 24.5 18.2 0.0055 16.4 0.3 3.9 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase tRNA-synt_1f PF01921.18 gi|383319096|ref|YP_005379937.1| - 2e-89 300.0 0.0 3.7e-89 299.2 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|383319096|ref|YP_005379937.1| - 0.00079 18.3 0.1 0.003 16.4 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (M) DEAD_assoc PF08494.11 gi|383319097|ref|YP_005379938.1| - 8.7e-37 126.8 0.1 1.9e-36 125.7 0.1 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|383319097|ref|YP_005379938.1| - 5.2e-35 120.8 0.0 6.1e-34 117.3 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|383319097|ref|YP_005379938.1| - 9.2e-24 83.9 0.1 6.7e-21 74.7 0.1 2.8 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|383319097|ref|YP_005379938.1| - 4.1e-10 39.9 0.0 8.9e-10 38.8 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|383319097|ref|YP_005379938.1| - 0.00014 22.2 0.1 0.0032 17.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|383319097|ref|YP_005379938.1| - 0.00049 19.6 0.0 0.0012 18.4 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein SNF2_N PF00176.23 gi|383319097|ref|YP_005379938.1| - 0.00063 18.6 0.0 0.0013 17.5 0.0 1.5 2 0 0 2 2 2 1 SNF2 family N-terminal domain DLIC PF05783.11 gi|383319097|ref|YP_005379938.1| - 0.00087 18.2 0.0 0.013 14.4 0.0 2.0 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) AAA_30 PF13604.6 gi|383319097|ref|YP_005379938.1| - 0.0011 18.7 0.1 0.01 15.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain SecA_DEAD PF07517.14 gi|383319097|ref|YP_005379938.1| - 0.0015 17.9 0.0 0.0026 17.1 0.0 1.3 1 0 0 1 1 1 1 SecA DEAD-like domain AAA_22 PF13401.6 gi|383319097|ref|YP_005379938.1| - 0.0043 17.3 0.2 0.062 13.6 0.0 3.0 3 1 0 3 3 3 1 AAA domain UvrD-helicase PF00580.21 gi|383319097|ref|YP_005379938.1| - 0.18 11.3 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Zn-ribbon_8 PF09723.10 gi|383319097|ref|YP_005379938.1| - 0.19 11.9 0.6 0.5 10.5 0.6 1.7 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|383319097|ref|YP_005379938.1| - 0.21 11.8 0.2 0.62 10.4 0.2 1.8 1 0 0 1 1 1 0 zinc-ribbon BtrH_N PF14399.6 gi|383319098|ref|YP_005379939.1| - 4.5e-40 137.0 0.0 6.3e-40 136.5 0.0 1.2 1 0 0 1 1 1 1 Butirosin biosynthesis protein H, N-terminal DUF4872 PF16169.5 gi|383319098|ref|YP_005379939.1| - 1.9e-37 128.7 0.0 2.6e-37 128.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4872) PDU_like PF15953.5 gi|383319099|ref|YP_005379940.1| - 0.011 15.8 0.0 0.014 15.4 0.0 1.1 1 0 0 1 1 1 0 Putative propanediol utilisation NRD1_2 PF01995.16 gi|383319100|ref|YP_005379941.1| - 2.6e-99 331.3 0.1 2.9e-99 331.2 0.1 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 Fe-S_biosyn PF01521.20 gi|383319102|ref|YP_005379943.1| - 1.3e-10 41.5 0.0 1.4e-10 41.3 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis NTP_transferase PF00483.23 gi|383319103|ref|YP_005379944.1| - 3.2e-47 161.2 0.0 3.9e-47 160.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|383319103|ref|YP_005379944.1| - 4.6e-22 76.8 24.5 2.3e-08 33.4 0.7 5.5 1 1 5 6 6 6 6 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|383319103|ref|YP_005379944.1| - 2.5e-10 41.0 0.0 3.9e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|383319103|ref|YP_005379944.1| - 3.2e-09 36.4 28.0 6.6e-05 22.6 3.6 5.7 2 1 4 6 6 6 5 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|383319103|ref|YP_005379944.1| - 0.0072 15.3 0.1 0.011 14.8 0.1 1.3 1 0 0 1 1 1 1 L-fucokinase DUF4954 PF16314.5 gi|383319103|ref|YP_005379944.1| - 0.62 8.1 2.0 0.89 7.6 2.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Rad51 PF08423.11 gi|383319104|ref|YP_005379945.1| - 8.7e-32 110.4 0.5 1.1e-31 110.1 0.5 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|383319104|ref|YP_005379945.1| - 4.4e-13 49.3 0.2 5.2e-13 49.1 0.2 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|383319104|ref|YP_005379945.1| - 1.8e-10 40.6 4.4 2.5e-09 36.9 4.4 2.0 1 1 0 1 1 1 1 KaiC Zot PF05707.12 gi|383319104|ref|YP_005379945.1| - 4.5e-10 39.5 0.0 5.2e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_25 PF13481.6 gi|383319104|ref|YP_005379945.1| - 4.9e-10 39.3 0.0 7.8e-10 38.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|383319104|ref|YP_005379945.1| - 3.6e-06 26.8 0.0 5e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|383319104|ref|YP_005379945.1| - 0.00045 19.6 0.4 0.014 14.8 0.0 2.1 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain CobU PF02283.16 gi|383319104|ref|YP_005379945.1| - 0.00069 19.2 0.0 0.0013 18.3 0.0 1.3 1 1 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase KTI12 PF08433.10 gi|383319104|ref|YP_005379945.1| - 0.0012 18.4 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 ATPase_2 PF01637.18 gi|383319104|ref|YP_005379945.1| - 0.016 15.1 0.0 0.026 14.4 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea TrwB_AAD_bind PF10412.9 gi|383319104|ref|YP_005379945.1| - 0.017 14.1 0.1 0.05 12.5 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Rimk_N PF18030.1 gi|383319104|ref|YP_005379945.1| - 0.027 14.9 0.1 0.052 13.9 0.1 1.5 1 0 0 1 1 1 0 RimK PreATP-grasp domain IstB_IS21 PF01695.17 gi|383319104|ref|YP_005379945.1| - 0.038 13.7 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein CbiA PF01656.23 gi|383319104|ref|YP_005379945.1| - 0.055 13.5 0.0 0.098 12.7 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MucB_RseB PF03888.14 gi|383319104|ref|YP_005379945.1| - 0.065 12.8 0.0 0.093 12.3 0.0 1.3 1 0 0 1 1 1 0 MucB/RseB N-terminal domain NIL PF09383.10 gi|383319105|ref|YP_005379946.1| - 0.0031 17.3 0.1 0.48 10.3 0.0 2.4 2 0 0 2 2 2 2 NIL domain DUF460 PF04312.13 gi|383319105|ref|YP_005379946.1| - 0.02 14.6 0.6 0.056 13.1 0.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF460) NERD PF08378.11 gi|383319106|ref|YP_005379947.1| - 7.8e-18 64.9 0.1 2.5e-16 60.1 0.0 2.2 2 0 0 2 2 2 1 Nuclease-related domain DEAD_assoc PF08494.11 gi|383319106|ref|YP_005379947.1| - 0.0043 16.9 0.0 0.0078 16.0 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated DpnII PF04556.12 gi|383319106|ref|YP_005379947.1| - 0.019 14.3 0.8 0.028 13.7 0.8 1.2 1 0 0 1 1 1 0 DpnII restriction endonuclease Sigma70_r1_1 PF03979.14 gi|383319106|ref|YP_005379947.1| - 0.095 12.8 1.4 1.1 9.3 0.4 2.5 2 1 0 2 2 2 0 Sigma-70 factor, region 1.1 Mannosyl_trans4 PF15971.5 gi|383319107|ref|YP_005379948.1| - 5.2e-06 26.4 4.0 5.2e-06 26.4 4.0 2.8 2 1 3 5 5 5 1 DolP-mannose mannosyltransferase SPC25 PF06703.11 gi|383319107|ref|YP_005379948.1| - 1.6 8.5 4.4 0.56 10.0 0.2 2.3 2 1 0 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) PMT_2 PF13231.6 gi|383319109|ref|YP_005379950.1| - 3e-09 37.3 17.4 3e-09 37.3 17.4 2.7 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF543 PF04418.12 gi|383319109|ref|YP_005379950.1| - 5.4 7.1 6.6 8.1 6.5 0.2 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF543) Toxin_R_bind_C PF07951.12 gi|383319110|ref|YP_005379951.1| - 0.063 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Clostridium neurotoxin, C-terminal receptor binding HTH_29 PF13551.6 gi|383319110|ref|YP_005379951.1| - 0.12 12.4 0.0 0.33 11.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix DUF2072 PF09845.9 gi|383319111|ref|YP_005379952.1| - 6.9e-38 129.9 0.1 8.7e-38 129.6 0.1 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein TF_Zn_Ribbon PF08271.12 gi|383319111|ref|YP_005379952.1| - 0.25 10.9 1.7 1.5 8.4 0.0 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding DUF2073 PF09846.9 gi|383319112|ref|YP_005379953.1| - 2.6e-37 126.9 0.1 3.2e-37 126.6 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|383319113|ref|YP_005379954.1| - 2.2e-16 59.9 0.0 3.2e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|383319113|ref|YP_005379954.1| - 4e-14 52.6 0.4 1.1e-06 28.4 0.1 2.9 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|383319113|ref|YP_005379954.1| - 2.8e-05 23.6 0.0 0.031 13.7 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family Roc PF08477.13 gi|383319113|ref|YP_005379954.1| - 3e-05 24.2 0.0 0.012 15.8 0.0 2.2 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase RsgA_GTPase PF03193.16 gi|383319113|ref|YP_005379954.1| - 3.3e-05 23.8 0.1 0.28 11.1 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 gi|383319113|ref|YP_005379954.1| - 0.00014 21.5 0.2 0.0005 19.6 0.2 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|383319113|ref|YP_005379954.1| - 0.00053 20.0 0.0 0.0008 19.4 0.0 1.3 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 gi|383319113|ref|YP_005379954.1| - 0.00061 19.3 0.0 0.066 12.6 0.0 2.4 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|383319113|ref|YP_005379954.1| - 0.00067 19.0 0.0 0.001 18.4 0.0 1.2 1 0 0 1 1 1 1 Septin AAA_24 PF13479.6 gi|383319113|ref|YP_005379954.1| - 0.0061 16.3 0.0 0.0095 15.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 gi|383319113|ref|YP_005379954.1| - 0.02 14.9 0.0 3.9 7.5 0.0 2.3 2 1 0 2 2 2 0 Dynamin family AAA_18 PF13238.6 gi|383319113|ref|YP_005379954.1| - 0.021 15.4 0.0 0.071 13.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|383319113|ref|YP_005379954.1| - 0.028 14.9 0.1 0.061 13.8 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|383319113|ref|YP_005379954.1| - 0.032 13.2 0.2 0.11 11.5 0.0 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Parvo_NS1 PF01057.17 gi|383319113|ref|YP_005379954.1| - 0.033 13.3 0.0 0.055 12.6 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_16 PF13191.6 gi|383319113|ref|YP_005379954.1| - 0.035 14.5 0.0 0.051 14.0 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|383319113|ref|YP_005379954.1| - 0.041 14.3 0.0 0.085 13.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Guanylate_kin PF00625.21 gi|383319113|ref|YP_005379954.1| - 0.049 13.3 0.0 0.078 12.7 0.0 1.4 1 1 0 1 1 1 0 Guanylate kinase ATPase_2 PF01637.18 gi|383319113|ref|YP_005379954.1| - 0.05 13.5 0.0 0.059 13.3 0.0 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|383319113|ref|YP_005379954.1| - 0.08 12.1 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|383319113|ref|YP_005379954.1| - 0.092 13.0 0.0 0.17 12.1 0.0 1.7 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|383319113|ref|YP_005379954.1| - 0.092 13.3 0.0 0.14 12.7 0.0 1.3 1 1 0 1 1 1 0 ABC transporter cobW PF02492.19 gi|383319113|ref|YP_005379954.1| - 0.18 11.4 0.0 2 7.9 0.0 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CBS PF00571.28 gi|383319114|ref|YP_005379955.1| - 1.4e-25 89.5 7.2 1.4e-13 51.1 0.4 2.3 2 0 0 2 2 2 2 CBS domain zf-RRN7 PF11781.8 gi|383319114|ref|YP_005379955.1| - 0.00055 19.6 2.3 0.00088 18.9 2.3 1.2 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF4428 PF14471.6 gi|383319114|ref|YP_005379955.1| - 0.0067 16.3 0.2 0.013 15.4 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) RecR PF02132.15 gi|383319114|ref|YP_005379955.1| - 0.16 11.6 1.1 0.37 10.4 1.1 1.6 1 0 0 1 1 1 0 RecR protein zf-HIT PF04438.16 gi|383319114|ref|YP_005379955.1| - 0.96 9.4 3.2 4.9 7.1 3.2 1.9 1 1 0 1 1 1 0 HIT zinc finger CBS PF00571.28 gi|383319115|ref|YP_005379956.1| - 5.6e-54 180.4 8.0 3.3e-14 53.1 0.1 4.1 4 0 0 4 4 4 4 CBS domain sCache_3_2 PF17203.4 gi|383319115|ref|YP_005379956.1| - 0.002 18.3 2.3 6 7.0 0.0 4.1 4 0 0 4 4 4 1 Single cache domain 3 GAF_2 PF13185.6 gi|383319115|ref|YP_005379956.1| - 0.0022 18.3 2.5 16 5.8 0.0 3.9 3 1 1 4 4 4 2 GAF domain Acetyltransf_1 PF00583.25 gi|383319115|ref|YP_005379956.1| - 0.059 13.6 0.0 8.6 6.6 0.0 3.1 2 1 0 2 2 2 0 Acetyltransferase (GNAT) family IF3_N PF05198.16 gi|383319115|ref|YP_005379956.1| - 0.14 12.4 0.5 40 4.6 0.0 3.6 4 0 0 4 4 4 0 Translation initiation factor IF-3, N-terminal domain H_kinase_N PF12282.8 gi|383319115|ref|YP_005379956.1| - 0.59 10.1 2.6 27 4.7 0.1 3.2 3 1 1 4 4 4 0 Signal transduction histidine kinase CBS PF00571.28 gi|383319116|ref|YP_005379957.1| - 1.2e-52 176.2 13.4 2.9e-14 53.3 0.1 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|383319117|ref|YP_005379958.1| - 6.1e-42 141.9 11.7 1.2e-10 41.6 0.3 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|383319118|ref|YP_005379959.1| - 9.1e-47 157.3 10.8 1.9e-18 66.6 0.4 4.1 4 0 0 4 4 4 4 CBS domain Y1_Tnp PF01797.16 gi|383319119|ref|YP_005379960.1| - 2.4e-37 127.7 0.5 2.8e-37 127.5 0.5 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 gi|383319120|ref|YP_005379961.1| - 1.6e-12 47.1 0.2 3.1e-12 46.2 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain SHMT PF00464.19 gi|383319121|ref|YP_005379962.1| - 3e-77 259.9 0.1 3.8e-77 259.6 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|383319121|ref|YP_005379962.1| - 2.9e-09 36.6 0.0 1.3e-08 34.4 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II SelA PF03841.13 gi|383319121|ref|YP_005379962.1| - 1.3e-06 27.7 0.0 6.9e-06 25.3 0.0 2.0 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Beta_elim_lyase PF01212.21 gi|383319121|ref|YP_005379962.1| - 2.9e-06 26.8 0.0 4.5e-06 26.2 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|383319121|ref|YP_005379962.1| - 0.00072 18.6 0.0 0.0012 17.8 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|383319121|ref|YP_005379962.1| - 0.14 10.6 0.0 0.29 9.6 0.0 1.4 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme HAD PF12710.7 gi|383319122|ref|YP_005379963.1| - 1.3e-22 81.2 0.0 1.6e-22 80.8 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|383319122|ref|YP_005379963.1| - 2.1e-19 70.6 0.0 3.6e-19 69.9 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|383319122|ref|YP_005379963.1| - 8e-10 38.9 0.0 2.8e-08 33.8 0.0 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|383319122|ref|YP_005379963.1| - 1.4e-06 27.9 0.0 1.9e-05 24.2 0.0 2.0 1 1 0 1 1 1 1 Putative Phosphatase HAD_2 PF13419.6 gi|383319122|ref|YP_005379963.1| - 1.7e-06 28.2 0.0 0.0002 21.5 0.0 2.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF2935 PF11155.8 gi|383319123|ref|YP_005379964.1| - 0.11 12.9 27.8 0.96 9.8 7.0 3.8 2 2 1 3 3 3 0 Domain of unknown function (DUF2935) MscS_porin PF12795.7 gi|383319123|ref|YP_005379964.1| - 0.56 9.7 42.1 0.29 10.7 9.4 4.0 1 1 3 4 4 4 0 Mechanosensitive ion channel porin domain DUF1771 PF08590.10 gi|383319123|ref|YP_005379964.1| - 0.77 10.2 37.7 0.41 11.1 6.4 5.0 3 2 2 5 5 5 0 Domain of unknown function (DUF1771) SRF-TF PF00319.18 gi|383319123|ref|YP_005379964.1| - 0.97 9.0 6.2 0.79 9.3 0.1 3.3 3 0 0 3 3 3 0 SRF-type transcription factor (DNA-binding and dimerisation domain) Seryl_tRNA_N PF02403.22 gi|383319123|ref|YP_005379964.1| - 1.7 8.9 54.9 1 9.6 10.5 4.9 1 1 4 5 5 5 0 Seryl-tRNA synthetase N-terminal domain DUF357 PF04010.13 gi|383319123|ref|YP_005379964.1| - 3.9 7.6 7.2 29 4.8 0.9 3.7 2 1 2 4 4 4 0 Protein of unknown function (DUF357) FUSC PF04632.12 gi|383319123|ref|YP_005379964.1| - 4.1 5.8 7.0 1.4 7.3 4.0 1.7 1 1 1 2 2 2 0 Fusaric acid resistance protein family HBM PF16591.5 gi|383319123|ref|YP_005379964.1| - 5 6.5 29.7 0.3 10.5 16.7 3.4 1 1 3 4 4 4 0 Helical bimodular sensor domain DUF948 PF06103.11 gi|383319123|ref|YP_005379964.1| - 5.7 7.3 15.8 1.4 9.2 0.5 4.3 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) DUF373 PF04123.13 gi|383319124|ref|YP_005379965.1| - 6.6e-119 397.3 10.8 7.9e-119 397.0 10.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Ycf4 PF02392.16 gi|383319124|ref|YP_005379965.1| - 0.38 10.3 4.2 6 6.4 0.3 2.3 2 0 0 2 2 2 0 Ycf4 Mrr_cat PF04471.12 gi|383319126|ref|YP_005379967.1| - 0.0082 16.2 0.0 0.013 15.5 0.0 1.5 1 1 0 1 1 1 1 Restriction endonuclease RNA_pol_L_2 PF13656.6 gi|383319126|ref|YP_005379967.1| - 0.1 12.4 0.0 0.59 9.9 0.0 2.1 1 1 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Pribosyltran PF00156.27 gi|383319127|ref|YP_005379968.1| - 4.6e-27 94.5 0.0 7.4e-27 93.8 0.0 1.3 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|383319127|ref|YP_005379968.1| - 9.5e-05 21.9 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|383319127|ref|YP_005379968.1| - 0.002 17.6 0.4 0.0055 16.2 0.4 1.7 1 1 1 2 2 2 1 Phosphoribosyl transferase Pribosyl_synth PF14572.6 gi|383319127|ref|YP_005379968.1| - 0.0045 17.0 0.1 0.0062 16.6 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain FMN_red PF03358.15 gi|383319128|ref|YP_005379969.1| - 1.8e-09 37.5 0.1 6e-06 26.1 0.0 2.1 1 1 1 2 2 2 2 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.25 gi|383319128|ref|YP_005379969.1| - 1.1e-08 35.4 0.4 1.9e-08 34.6 0.4 1.5 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|383319128|ref|YP_005379969.1| - 1.2e-07 32.1 0.0 1.7e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_2 PF02525.17 gi|383319128|ref|YP_005379969.1| - 4.5e-05 23.2 0.0 0.00035 20.4 0.0 2.0 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_3 PF12641.7 gi|383319128|ref|YP_005379969.1| - 0.0004 20.1 0.1 0.00062 19.5 0.1 1.6 1 1 0 1 1 1 1 Flavodoxin domain GMP_synt_C PF00958.22 gi|383319129|ref|YP_005379970.1| - 3.2e-31 107.3 0.0 7.8e-31 106.0 0.0 1.7 1 1 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|383319129|ref|YP_005379970.1| - 3.2e-10 39.5 0.1 0.00013 21.2 0.1 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|383319129|ref|YP_005379970.1| - 0.00033 19.6 0.1 0.014 14.2 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|383319129|ref|YP_005379970.1| - 0.0019 17.7 0.0 0.008 15.7 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|383319129|ref|YP_005379970.1| - 0.011 15.4 0.1 0.011 15.4 0.1 1.4 2 0 0 2 2 2 0 Asparagine synthase ThiI PF02568.14 gi|383319129|ref|YP_005379970.1| - 0.046 13.3 0.1 0.31 10.6 0.1 2.3 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 gi|383319129|ref|YP_005379970.1| - 0.053 12.8 0.0 0.091 12.0 0.0 1.4 2 0 0 2 2 2 0 Arginosuccinate synthase ATP_bind_3 PF01171.20 gi|383319129|ref|YP_005379970.1| - 0.085 12.6 0.0 0.17 11.6 0.0 1.6 1 1 0 1 1 1 0 PP-loop family Aminotran_3 PF00202.21 gi|383319130|ref|YP_005379971.1| - 5.1e-129 430.5 0.1 6.5e-129 430.1 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|383319130|ref|YP_005379971.1| - 2.7e-06 26.8 0.0 1.2e-05 24.6 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|383319130|ref|YP_005379971.1| - 0.0015 17.5 0.0 0.0065 15.5 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Asparaginase_C PF17763.1 gi|383319130|ref|YP_005379971.1| - 0.003 17.8 0.2 0.13 12.5 0.0 2.7 3 0 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain ABC_tran PF00005.27 gi|383319131|ref|YP_005379972.1| - 5.9e-24 85.1 0.0 8.6e-24 84.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383319131|ref|YP_005379972.1| - 1.6e-05 24.9 3.8 0.011 15.6 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383319131|ref|YP_005379972.1| - 0.00025 20.6 0.7 0.095 12.1 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|383319131|ref|YP_005379972.1| - 0.016 14.9 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|383319131|ref|YP_005379972.1| - 0.033 13.8 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|383319131|ref|YP_005379972.1| - 0.06 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|383319131|ref|YP_005379972.1| - 0.06 13.8 3.1 0.16 12.4 3.1 1.9 1 1 1 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|383319131|ref|YP_005379972.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.29 gi|383319131|ref|YP_005379972.1| - 0.14 12.6 0.3 0.5 10.8 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DLIC PF05783.11 gi|383319131|ref|YP_005379972.1| - 0.16 10.8 0.0 0.32 9.8 0.0 1.3 1 1 0 1 1 1 0 Dynein light intermediate chain (DLIC) ATP-synt_ab PF00006.25 gi|383319131|ref|YP_005379972.1| - 0.18 11.4 0.0 0.2 11.3 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain UPF0051 PF01458.17 gi|383319132|ref|YP_005379973.1| - 7.9e-54 182.6 0.2 9.9e-54 182.3 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC2_membrane_2 PF12679.7 gi|383319133|ref|YP_005379974.1| - 1.5e-22 80.3 27.3 8.8e-22 77.7 27.3 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319133|ref|YP_005379974.1| - 1.6e-07 31.5 14.2 1.6e-07 31.5 14.2 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383319134|ref|YP_005379975.1| - 2.1e-11 43.6 25.8 4.2e-10 39.4 25.8 2.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319134|ref|YP_005379975.1| - 0.0022 18.0 15.5 0.0022 18.0 15.5 2.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383319134|ref|YP_005379975.1| - 0.6 9.6 34.9 0.25 10.8 28.0 2.8 2 1 0 2 2 2 0 ABC-2 family transporter protein RCC1_2 PF13540.6 gi|383319135|ref|YP_005379976.1| - 1.7e-47 158.3 37.0 4.6e-11 42.2 1.1 7.4 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat RCC1 PF00415.18 gi|383319135|ref|YP_005379976.1| - 2.6e-45 152.8 31.6 1.3e-11 44.9 0.0 8.3 7 2 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat Reg_prop PF07494.11 gi|383319135|ref|YP_005379976.1| - 0.054 13.7 2.0 36 5.1 0.1 5.1 6 0 0 6 6 6 0 Two component regulator propeller YHS PF04945.13 gi|383319136|ref|YP_005379977.1| - 5.2e-14 52.1 1.2 5.4e-14 52.0 1.2 1.0 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|383319136|ref|YP_005379977.1| - 0.0022 17.9 0.2 0.0027 17.6 0.2 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|383319136|ref|YP_005379977.1| - 0.0023 18.2 0.7 0.0031 17.8 0.7 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain Ribosomal_L24e PF01246.20 gi|383319136|ref|YP_005379977.1| - 0.016 15.4 0.1 0.018 15.3 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L24e DUF2116 PF09889.9 gi|383319136|ref|YP_005379977.1| - 0.021 14.8 1.2 0.029 14.4 0.2 1.6 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Peptidase_S8 PF00082.22 gi|383319137|ref|YP_005379978.1| - 1.4e-63 214.9 6.1 2.1e-63 214.4 6.1 1.2 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.16 gi|383319137|ref|YP_005379978.1| - 7e-05 23.4 0.1 0.00017 22.2 0.1 1.7 1 1 0 1 1 1 1 Peptidase inhibitor I9 SIMPL PF04402.14 gi|383319137|ref|YP_005379978.1| - 0.057 13.9 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF541) DUF2099 PF09872.9 gi|383319138|ref|YP_005379979.1| - 5.7e-109 363.2 1.6 6.5e-109 363.1 1.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) NMT1_2 PF13379.6 gi|383319139|ref|YP_005379980.1| - 6.1e-19 68.7 0.0 7.5e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|383319139|ref|YP_005379980.1| - 1e-08 35.4 0.0 1.5e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like DUF3834 PF12916.7 gi|383319139|ref|YP_005379980.1| - 0.00075 18.8 0.0 0.13 11.5 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3834) Pribosyltran PF00156.27 gi|383319140|ref|YP_005379981.1| - 2.4e-22 79.2 1.2 3.2e-22 78.8 1.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|383319140|ref|YP_005379981.1| - 1.1e-05 25.0 0.5 1.7e-05 24.4 0.3 1.5 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|383319140|ref|YP_005379981.1| - 0.0022 17.5 0.1 0.0029 17.1 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Pyridoxal_deC PF00282.19 gi|383319141|ref|YP_005379982.1| - 2e-38 132.1 0.0 2.7e-38 131.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|383319141|ref|YP_005379982.1| - 5.2e-13 48.7 0.0 8.3e-11 41.4 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|383319141|ref|YP_005379982.1| - 1.4e-11 44.2 0.0 1.5e-10 40.8 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|383319141|ref|YP_005379982.1| - 4e-05 23.1 0.0 6.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|383319141|ref|YP_005379982.1| - 0.035 13.4 0.0 0.068 12.5 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family PPDK_N PF01326.19 gi|383319142|ref|YP_005379983.1| - 1.1e-112 376.6 0.1 1.7e-112 376.0 0.1 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|383319142|ref|YP_005379983.1| - 1.2e-85 287.2 0.4 2.1e-85 286.4 0.4 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|383319142|ref|YP_005379983.1| - 1.3e-26 92.1 2.5 3.7e-26 90.6 2.5 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Clp_N PF02861.20 gi|383319142|ref|YP_005379983.1| - 0.96 9.6 2.7 8.8 6.5 0.1 2.9 3 0 0 3 3 3 0 Clp amino terminal domain, pathogenicity island component HTH_3 PF01381.22 gi|383319143|ref|YP_005379984.1| - 7.1e-09 35.6 0.0 1.4e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.16 gi|383319143|ref|YP_005379984.1| - 2.6e-07 30.0 0.9 0.0038 16.7 1.0 2.3 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_31 PF13560.6 gi|383319143|ref|YP_005379984.1| - 9.6e-06 25.9 0.0 1.8e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|383319143|ref|YP_005379984.1| - 3.2e-05 24.0 0.1 0.00012 22.2 0.1 1.8 1 1 1 2 2 2 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_19 PF12844.7 gi|383319143|ref|YP_005379984.1| - 5.3e-05 23.2 1.0 0.00014 21.8 0.3 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|383319143|ref|YP_005379984.1| - 0.00043 20.1 0.1 0.00065 19.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|383319143|ref|YP_005379984.1| - 0.0012 18.8 0.1 0.0023 17.9 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_37 PF13744.6 gi|383319143|ref|YP_005379984.1| - 0.031 14.2 0.1 0.065 13.2 0.1 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|383319143|ref|YP_005379984.1| - 0.067 13.1 0.0 1.2 9.1 0.1 2.2 2 0 0 2 2 2 0 MarR family Sigma70_r3 PF04539.16 gi|383319143|ref|YP_005379984.1| - 0.19 11.8 1.3 5.1 7.3 0.2 2.9 3 0 0 3 3 3 0 Sigma-70 region 3 Peptidase_S8 PF00082.22 gi|383319144|ref|YP_005379985.1| - 4.3e-34 118.1 6.8 6.9e-34 117.5 6.8 1.3 1 0 0 1 1 1 1 Subtilase family DUF1203 PF06718.11 gi|383319145|ref|YP_005379986.1| - 0.081 13.2 0.0 3.4 8.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1203) tRNA-Thr_ED PF08915.11 gi|383319146|ref|YP_005379987.1| - 4.1e-54 182.4 0.1 7.4e-54 181.5 0.1 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|383319146|ref|YP_005379987.1| - 2.6e-16 59.5 0.4 5.7e-16 58.4 0.4 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|383319146|ref|YP_005379987.1| - 2.8e-15 56.8 0.2 5.3e-15 55.8 0.2 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) GOLGA2L5 PF15070.6 gi|383319146|ref|YP_005379987.1| - 0.6 8.7 1.7 4 6.0 0.1 2.4 3 0 0 3 3 3 0 Putative golgin subfamily A member 2-like protein 5 DHH PF01368.20 gi|383319147|ref|YP_005379988.1| - 5.9e-15 55.4 0.2 1e-14 54.6 0.2 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|383319147|ref|YP_005379988.1| - 7.8e-15 55.5 0.2 1.4e-14 54.7 0.2 1.4 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.18 gi|383319147|ref|YP_005379988.1| - 1e-14 54.8 0.0 4.1e-14 52.8 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain MFS_1 PF07690.16 gi|383319148|ref|YP_005379989.1| - 2.8e-30 105.4 52.5 7.7e-21 74.4 25.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|383319148|ref|YP_005379989.1| - 0.00051 19.0 19.1 0.023 13.6 4.6 3.5 1 1 1 3 3 3 3 MFS_1 like family MFS_1 PF07690.16 gi|383319149|ref|YP_005379990.1| - 4.5e-52 177.1 59.5 6.7e-36 123.9 40.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|383319149|ref|YP_005379990.1| - 4.3e-16 58.7 33.7 1.2e-11 44.2 12.6 2.7 1 1 1 2 2 2 2 MFS_1 like family MFS_2 PF13347.6 gi|383319149|ref|YP_005379990.1| - 1.6e-11 43.5 38.7 9.2e-10 37.6 12.3 3.1 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.24 gi|383319149|ref|YP_005379990.1| - 3.5e-09 36.0 42.3 3.5e-09 36.0 15.1 2.6 2 2 1 3 3 3 2 Sugar (and other) transporter MFS_4 PF06779.14 gi|383319149|ref|YP_005379990.1| - 0.0039 16.5 30.8 0.038 13.3 27.0 2.5 1 1 1 2 2 2 1 Uncharacterised MFS-type transporter YbfB MFS_3 PF05977.13 gi|383319149|ref|YP_005379990.1| - 1.2 7.4 25.0 0.028 12.8 6.4 2.3 1 1 1 2 2 2 0 Transmembrane secretion effector RCC1 PF00415.18 gi|383319150|ref|YP_005379991.1| - 1.3e-64 214.6 23.8 6.5e-15 55.5 0.1 8.8 8 2 0 8 8 8 8 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383319150|ref|YP_005379991.1| - 1.8e-58 193.3 33.2 1.7e-11 43.6 3.0 7.5 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat ABC2_membrane_2 PF12679.7 gi|383319151|ref|YP_005379992.1| - 2.6e-15 56.5 18.8 6.5e-15 55.2 18.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319151|ref|YP_005379992.1| - 1.6e-07 31.5 13.9 1.6e-07 31.5 13.9 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein DUF999 PF06198.11 gi|383319151|ref|YP_005379992.1| - 0.0073 16.3 0.7 0.021 14.8 0.7 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF999) ABC2_membrane_2 PF12679.7 gi|383319152|ref|YP_005379993.1| - 2.8e-21 76.1 26.4 6.9e-21 74.8 26.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319152|ref|YP_005379993.1| - 0.0009 18.4 26.8 0.0009 18.4 26.8 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319152|ref|YP_005379993.1| - 0.023 14.7 25.8 0.16 11.9 24.9 2.6 1 1 1 2 2 2 0 ABC-2 family transporter protein CopD PF05425.13 gi|383319153|ref|YP_005379994.1| - 0.012 15.9 0.3 0.02 15.3 0.3 1.3 1 0 0 1 1 1 0 Copper resistance protein D Peptidase_M18 PF02127.15 gi|383319154|ref|YP_005379995.1| - 0.0095 14.8 0.0 0.01 14.7 0.0 1.0 1 0 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) RCC1_2 PF13540.6 gi|383319155|ref|YP_005379996.1| - 3.2e-46 154.3 36.5 5.8e-11 41.9 1.6 7.0 7 0 0 7 7 7 6 Regulator of chromosome condensation (RCC1) repeat RCC1 PF00415.18 gi|383319155|ref|YP_005379996.1| - 4.9e-43 145.5 27.1 5.5e-13 49.3 0.5 9.0 8 1 1 9 9 9 5 Regulator of chromosome condensation (RCC1) repeat Reg_prop PF07494.11 gi|383319155|ref|YP_005379996.1| - 0.00013 21.7 3.2 3.7 8.1 0.0 6.1 7 0 0 7 7 7 1 Two component regulator propeller RHS_repeat PF05593.14 gi|383319155|ref|YP_005379996.1| - 4.4 7.9 8.8 6.5 7.4 0.3 4.0 5 0 0 5 5 5 0 RHS Repeat ABC2_membrane_2 PF12679.7 gi|383319156|ref|YP_005379997.1| - 2.3e-16 60.0 23.6 7.4e-16 58.3 23.6 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383319156|ref|YP_005379997.1| - 0.17 11.4 37.1 0.23 11.0 27.9 2.9 1 1 1 2 2 2 0 ABC-2 family transporter protein Bacillus_PapR PF05968.11 gi|383319156|ref|YP_005379997.1| - 0.65 9.9 2.5 0.42 10.5 0.4 1.8 2 0 0 2 2 2 0 Bacillus PapR protein ABC2_membrane_2 PF12679.7 gi|383319157|ref|YP_005379998.1| - 1.4e-24 86.9 23.9 3.8e-24 85.5 23.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319157|ref|YP_005379998.1| - 7.2e-07 28.6 35.0 7.2e-07 28.6 35.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF3852 PF12963.7 gi|383319158|ref|YP_005379999.1| - 0.12 12.7 0.2 0.16 12.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3852) DUF1495 PF07381.11 gi|383319159|ref|YP_005380000.1| - 6.2e-13 48.4 0.0 7.4e-13 48.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.6 gi|383319159|ref|YP_005380000.1| - 0.064 13.4 0.0 0.18 12.0 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|383319161|ref|YP_005380002.1| - 4.3e-18 64.9 0.0 9.7e-18 63.8 0.0 1.6 1 1 1 2 2 2 1 Winged helix DNA-binding domain (DUF1495) ABC2_membrane_2 PF12679.7 gi|383319162|ref|YP_005380003.1| - 8.7e-28 97.4 23.0 1.1e-27 97.1 23.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383319163|ref|YP_005380004.1| - 1.4e-18 67.2 21.9 4.3e-18 65.6 21.9 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319163|ref|YP_005380004.1| - 1.6e-07 31.5 13.5 1.6e-07 31.5 13.5 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319163|ref|YP_005380004.1| - 0.14 11.3 29.6 0.075 12.1 27.8 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein RCC1 PF00415.18 gi|383319164|ref|YP_005380005.1| - 5.1e-41 139.1 30.4 3.9e-12 46.6 0.3 8.5 9 1 0 9 9 9 4 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383319164|ref|YP_005380005.1| - 1.2e-27 95.0 29.9 0.00017 21.3 0.0 8.1 8 1 0 8 8 8 7 Regulator of chromosome condensation (RCC1) repeat Reg_prop PF07494.11 gi|383319164|ref|YP_005380005.1| - 0.0058 16.7 3.6 14 6.3 0.0 6.1 7 0 0 7 7 7 1 Two component regulator propeller DUF1495 PF07381.11 gi|383319165|ref|YP_005380006.1| - 1.9e-11 43.6 0.0 2.6e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.6 gi|383319165|ref|YP_005380006.1| - 0.0025 18.0 0.0 0.0041 17.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|383319165|ref|YP_005380006.1| - 0.013 15.5 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Phage_pRha PF09669.10 gi|383319165|ref|YP_005380006.1| - 0.08 13.5 0.0 0.19 12.3 0.0 1.6 2 0 0 2 2 2 0 Phage regulatory protein Rha (Phage_pRha) ABC2_membrane_2 PF12679.7 gi|383319167|ref|YP_005380008.1| - 2.4e-18 66.4 31.6 1.1e-17 64.3 31.6 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383319168|ref|YP_005380009.1| - 4.3e-17 62.3 22.5 1.2e-16 60.9 22.5 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319168|ref|YP_005380009.1| - 3.7e-07 30.3 11.1 3.7e-07 30.3 11.1 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383319168|ref|YP_005380009.1| - 0.0013 18.3 18.8 0.0013 18.3 18.8 2.7 1 1 2 3 3 3 1 ABC-2 family transporter protein DUF2871 PF11070.8 gi|383319168|ref|YP_005380009.1| - 0.012 15.9 2.3 0.012 15.9 2.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2871) CBP_BcsF PF11120.8 gi|383319168|ref|YP_005380009.1| - 0.42 10.7 0.1 0.42 10.7 0.1 3.9 5 0 0 5 5 5 0 Cellulose biosynthesis protein BcsF RCC1 PF00415.18 gi|383319169|ref|YP_005380010.1| - 4.2e-65 216.2 34.0 2e-14 53.9 0.2 8.1 8 0 0 8 8 8 7 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383319169|ref|YP_005380010.1| - 4.4e-45 150.6 45.8 2.2e-10 40.1 2.3 7.4 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat DUF4064 PF13273.6 gi|383319169|ref|YP_005380010.1| - 0.061 13.6 1.8 0.07 13.4 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) RHS_repeat PF05593.14 gi|383319169|ref|YP_005380010.1| - 0.6 10.7 4.8 43 4.8 0.4 4.1 4 0 0 4 4 4 0 RHS Repeat ABC2_membrane_2 PF12679.7 gi|383319171|ref|YP_005380012.1| - 1.3e-24 87.0 18.6 1.6e-24 86.7 18.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319171|ref|YP_005380012.1| - 7.4e-06 26.0 13.0 7.4e-06 26.0 13.0 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383319171|ref|YP_005380012.1| - 0.24 10.9 29.1 0.0084 15.7 16.6 3.0 2 1 1 3 3 3 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319171|ref|YP_005380012.1| - 1.6 7.7 29.2 2.1 7.4 28.2 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383319172|ref|YP_005380013.1| - 7.1e-13 48.5 19.4 2e-12 47.0 19.4 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383319172|ref|YP_005380013.1| - 7.3e-06 25.7 13.7 7.3e-06 25.7 13.7 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319172|ref|YP_005380013.1| - 0.0054 16.7 12.9 0.0054 16.7 12.9 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein DUF3098 PF11297.8 gi|383319172|ref|YP_005380013.1| - 0.27 10.8 0.1 0.27 10.8 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3098) ABC2_membrane_3 PF12698.7 gi|383319172|ref|YP_005380013.1| - 0.52 9.4 23.5 2.1 7.4 23.5 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2101 PF09874.9 gi|383319172|ref|YP_005380013.1| - 3.4 7.3 16.9 0.029 14.1 4.6 2.8 3 0 0 3 3 3 0 Predicted membrane protein (DUF2101) RCC1 PF00415.18 gi|383319173|ref|YP_005380014.1| - 2.3e-35 121.0 43.0 4.9e-10 39.9 0.4 8.8 7 2 1 9 9 9 4 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383319173|ref|YP_005380014.1| - 4.8e-25 86.8 39.0 3e-06 26.9 1.0 7.5 7 0 0 7 7 7 6 Regulator of chromosome condensation (RCC1) repeat AIM24 PF01987.17 gi|383319173|ref|YP_005380014.1| - 0.13 12.0 0.4 0.54 10.0 0.3 2.0 2 0 0 2 2 2 0 Mitochondrial biogenesis AIM24 ABC_tran PF00005.27 gi|383319174|ref|YP_005380015.1| - 1.6e-26 93.4 0.0 4.4e-26 92.0 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|383319174|ref|YP_005380015.1| - 7.1e-11 42.5 0.0 1.4e-06 28.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|383319174|ref|YP_005380015.1| - 2.5e-09 37.7 0.1 4.4e-09 36.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|383319174|ref|YP_005380015.1| - 0.024 15.2 0.0 0.061 13.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|383319174|ref|YP_005380015.1| - 0.034 14.6 0.1 0.23 11.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF1495 PF07381.11 gi|383319175|ref|YP_005380016.1| - 4.3e-17 61.7 0.3 5.5e-17 61.4 0.3 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF505 PF04458.12 gi|383319175|ref|YP_005380016.1| - 0.1 10.9 0.1 0.14 10.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF4364 PF14277.6 gi|383319175|ref|YP_005380016.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_24 PF13412.6 gi|383319175|ref|YP_005380016.1| - 0.15 11.7 0.0 0.72 9.5 0.0 2.1 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF5490 PF17593.2 gi|383319176|ref|YP_005380017.1| - 0.067 13.2 0.9 0.16 12.0 0.8 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5490) ABC2_membrane_2 PF12679.7 gi|383319177|ref|YP_005380018.1| - 2.8e-16 59.6 24.0 4.9e-16 58.9 24.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319177|ref|YP_005380018.1| - 8.4e-07 29.1 16.7 8.4e-07 29.1 16.7 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319177|ref|YP_005380018.1| - 5.9 5.9 34.7 13 4.7 34.7 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383319178|ref|YP_005380019.1| - 4.6e-08 32.7 25.7 3.1e-07 30.0 25.7 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319178|ref|YP_005380019.1| - 0.00015 21.8 16.1 0.00015 21.8 16.1 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319178|ref|YP_005380019.1| - 8.2 5.4 36.7 0.24 10.5 28.0 2.4 1 1 0 2 2 2 0 ABC-2 family transporter protein RCC1 PF00415.18 gi|383319179|ref|YP_005380020.1| - 2e-62 207.6 25.3 1.3e-11 44.9 0.2 8.3 8 0 0 8 8 8 7 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383319179|ref|YP_005380020.1| - 6.8e-49 162.8 36.7 1.1e-08 34.6 0.3 7.4 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat Reg_prop PF07494.11 gi|383319179|ref|YP_005380020.1| - 4.5e-05 23.2 0.5 3.3 8.2 0.0 5.5 5 0 0 5 5 5 1 Two component regulator propeller CarboxypepD_reg PF13620.6 gi|383319180|ref|YP_005380021.1| - 9.9e-21 73.8 19.0 8.9e-12 45.1 1.7 3.5 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|383319180|ref|YP_005380021.1| - 4.3e-10 39.5 9.3 1.4e-06 28.2 0.4 3.1 3 0 0 3 3 3 2 CarboxypepD_reg-like domain NPCBM_assoc PF10633.9 gi|383319180|ref|YP_005380021.1| - 5.2e-06 26.6 6.0 0.00036 20.7 0.2 3.6 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase bMG3 PF11974.8 gi|383319180|ref|YP_005380021.1| - 0.00013 22.0 0.2 0.61 10.1 0.2 2.5 1 1 1 2 2 2 2 Bacterial alpha-2-macroglobulin MG3 domain DUF11 PF01345.18 gi|383319180|ref|YP_005380021.1| - 0.00017 21.8 5.6 0.066 13.5 0.7 4.2 2 1 1 3 3 3 2 Domain of unknown function DUF11 FixG_C PF11614.8 gi|383319180|ref|YP_005380021.1| - 0.00028 21.1 0.5 2 8.7 0.2 3.5 2 1 2 4 4 4 2 IG-like fold at C-terminal of FixG, putative oxidoreductase CARDB PF07705.11 gi|383319180|ref|YP_005380021.1| - 0.0019 18.4 8.0 0.23 11.8 0.2 4.3 3 2 0 3 3 3 2 CARDB PEGA PF08308.11 gi|383319180|ref|YP_005380021.1| - 0.0022 17.9 1.4 0.59 10.1 0.1 3.4 3 0 0 3 3 3 1 PEGA domain fn3_3 PF14686.6 gi|383319180|ref|YP_005380021.1| - 0.01 15.6 7.9 0.074 12.8 0.7 3.0 3 0 0 3 3 3 0 Polysaccharide lyase family 4, domain II Fn3-like PF14310.6 gi|383319180|ref|YP_005380021.1| - 0.015 15.4 0.2 37 4.5 0.0 5.0 5 1 0 5 5 5 0 Fibronectin type III-like domain BatD PF13584.6 gi|383319180|ref|YP_005380021.1| - 0.022 13.6 0.1 0.28 9.9 0.0 2.1 2 0 0 2 2 2 0 Oxygen tolerance DUF4198 PF10670.9 gi|383319180|ref|YP_005380021.1| - 0.028 14.8 2.4 6.3 7.1 0.0 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF4198) DUF916 PF06030.12 gi|383319180|ref|YP_005380021.1| - 0.61 10.2 3.4 16 5.6 0.1 3.5 4 0 0 4 4 4 0 Bacterial protein of unknown function (DUF916) SpaA PF17802.1 gi|383319180|ref|YP_005380021.1| - 6.3 7.2 11.0 1.2 9.5 0.2 3.3 3 1 0 3 3 3 0 Prealbumin-like fold domain Lactamase_B_2 PF12706.7 gi|383319182|ref|YP_005380023.1| - 7.5e-20 71.3 0.1 5.1e-11 42.5 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|383319182|ref|YP_005380023.1| - 2.5e-11 43.9 0.3 2e-10 41.0 0.3 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|383319182|ref|YP_005380023.1| - 4.7e-08 32.6 0.0 8.9e-08 31.7 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease CarboxypepD_reg PF13620.6 gi|383319183|ref|YP_005380024.1| - 4.2e-08 33.4 3.0 9.7e-08 32.2 3.0 1.6 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain fn3_3 PF14686.6 gi|383319183|ref|YP_005380024.1| - 0.0055 16.5 2.3 0.012 15.3 2.3 1.7 1 1 0 1 1 1 1 Polysaccharide lyase family 4, domain II SdrD_B PF17210.3 gi|383319183|ref|YP_005380024.1| - 0.12 12.6 0.1 0.17 12.1 0.1 1.3 1 0 0 1 1 1 0 SdrD B-like domain E1-E2_ATPase PF00122.20 gi|383319184|ref|YP_005380025.1| - 1.5e-14 54.0 0.2 5e-14 52.2 0.2 1.9 1 0 0 1 1 1 1 E1-E2 ATPase Radical_SAM PF04055.21 gi|383319185|ref|YP_005380026.1| - 9.1e-17 61.9 0.0 3.8e-16 59.9 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.7 gi|383319185|ref|YP_005380026.1| - 3.6e-06 27.1 0.0 1e-05 25.7 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|383319185|ref|YP_005380026.1| - 7.3e-05 22.4 0.2 0.0014 18.4 0.0 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|383319185|ref|YP_005380026.1| - 0.0036 17.9 0.0 0.011 16.3 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_6 PF14579.6 gi|383319185|ref|YP_005380026.1| - 0.02 15.1 0.0 0.057 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif PsbU PF06514.11 gi|383319185|ref|YP_005380026.1| - 0.16 12.0 0.0 0.34 10.9 0.0 1.5 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) RCC1 PF00415.18 gi|383319186|ref|YP_005380027.1| - 2.2e-51 172.3 16.8 4.8e-16 59.1 0.2 8.3 8 0 0 8 8 8 7 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383319186|ref|YP_005380027.1| - 3.3e-46 154.2 22.8 1.4e-11 43.9 0.6 7.3 7 0 0 7 7 7 6 Regulator of chromosome condensation (RCC1) repeat Reg_prop PF07494.11 gi|383319186|ref|YP_005380027.1| - 2.4e-06 27.1 0.4 16 6.1 0.0 6.9 7 0 0 7 7 7 1 Two component regulator propeller LytB_WW PF18342.1 gi|383319186|ref|YP_005380027.1| - 0.0057 16.7 1.4 12 6.1 0.0 4.3 5 0 0 5 5 5 1 Endo-beta-N-acetylglucosaminidase LytB WW domain DarA_N PF18788.1 gi|383319186|ref|YP_005380027.1| - 0.073 13.2 0.3 13 6.0 0.0 3.5 4 0 0 4 4 4 0 Defence against restriction A N-terminal ABC2_membrane_2 PF12679.7 gi|383319187|ref|YP_005380028.1| - 2.4e-21 76.3 19.7 5e-21 75.2 19.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319187|ref|YP_005380028.1| - 3.1e-10 40.3 10.5 3.1e-10 40.3 10.5 2.0 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383319187|ref|YP_005380028.1| - 9e-07 28.7 21.7 9e-07 28.7 21.7 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319187|ref|YP_005380028.1| - 6e-05 22.3 29.7 6e-05 22.3 29.7 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383319188|ref|YP_005380029.1| - 2.4e-21 76.3 29.4 5.8e-20 71.7 29.4 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319188|ref|YP_005380029.1| - 0.0027 16.9 31.6 0.0027 16.9 31.6 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319188|ref|YP_005380029.1| - 1.2 9.1 30.3 0.055 13.4 23.0 2.2 1 1 0 2 2 2 0 ABC-2 family transporter protein DUF1495 PF07381.11 gi|383319190|ref|YP_005380031.1| - 7.6e-14 51.3 0.0 9.5e-14 51.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) CxxCxxCC PF03692.15 gi|383319191|ref|YP_005380032.1| - 2.2e-10 41.1 0.6 1.2e-09 38.7 0.6 2.0 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain AhpC-TSA PF00578.21 gi|383319192|ref|YP_005380033.1| - 1.1e-22 80.3 0.0 1.3e-22 80.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|383319192|ref|YP_005380033.1| - 4.2e-10 39.5 0.0 5.8e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|383319192|ref|YP_005380033.1| - 0.0022 17.9 0.0 0.0032 17.4 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC Thioredoxin_8 PF13905.6 gi|383319192|ref|YP_005380033.1| - 0.0057 17.0 0.0 0.031 14.6 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin-like CxxCxxCC PF03692.15 gi|383319193|ref|YP_005380034.1| - 3.4e-11 43.7 2.6 1.1e-10 42.0 2.6 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain MATalpha_HMGbox PF04769.12 gi|383319193|ref|YP_005380034.1| - 0.26 10.6 0.0 0.42 9.9 0.0 1.3 1 0 0 1 1 1 0 Mating-type protein MAT alpha 1 HMG-box GATase PF00117.28 gi|383319194|ref|YP_005380035.1| - 3.4e-39 134.6 0.0 3.8e-39 134.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|383319194|ref|YP_005380035.1| - 1.9e-16 60.5 0.5 1.2e-14 54.5 0.2 2.8 1 1 1 2 2 2 1 Peptidase C26 DUF1129 PF06570.11 gi|383319195|ref|YP_005380036.1| - 0.65 9.5 6.5 1 8.8 6.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) Vma12 PF11712.8 gi|383319195|ref|YP_005380036.1| - 2 8.5 4.8 10 6.2 4.8 2.0 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF3810 PF12725.7 gi|383319195|ref|YP_005380036.1| - 3 7.1 7.9 0.34 10.2 2.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) DUF2070 PF09843.9 gi|383319195|ref|YP_005380036.1| - 9 4.5 12.1 10 4.2 12.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Flavodoxin_3 PF12641.7 gi|383319196|ref|YP_005380037.1| - 1.1e-09 38.2 0.0 2e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain Fer4_10 PF13237.6 gi|383319196|ref|YP_005380037.1| - 4.1e-08 33.2 9.4 7.8e-08 32.3 9.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Flavodoxin_5 PF12724.7 gi|383319196|ref|YP_005380037.1| - 2.9e-07 30.8 0.0 5.2e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|383319196|ref|YP_005380037.1| - 4.7e-07 30.1 0.0 6.9e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Fer4_7 PF12838.7 gi|383319196|ref|YP_005380037.1| - 5e-07 30.2 4.0 0.00084 19.9 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|383319196|ref|YP_005380037.1| - 4.1e-06 26.4 6.5 0.00018 21.2 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383319196|ref|YP_005380037.1| - 9.1e-05 22.4 10.5 0.028 14.5 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|383319196|ref|YP_005380037.1| - 0.00013 22.1 10.3 0.011 15.9 2.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383319196|ref|YP_005380037.1| - 0.0017 19.2 9.5 0.49 11.4 0.7 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|383319196|ref|YP_005380037.1| - 0.0079 17.1 14.2 0.22 12.6 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|383319196|ref|YP_005380037.1| - 0.022 14.8 9.9 0.053 13.6 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Flavodoxin_4 PF12682.7 gi|383319196|ref|YP_005380037.1| - 0.023 14.4 0.0 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 Flavodoxin Fer4_21 PF14697.6 gi|383319196|ref|YP_005380037.1| - 0.039 14.1 9.8 0.13 12.4 2.0 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383319196|ref|YP_005380037.1| - 0.043 14.4 6.6 0.31 11.6 0.7 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383319196|ref|YP_005380037.1| - 0.19 12.3 12.2 1.5 9.5 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|383319196|ref|YP_005380037.1| - 0.89 9.8 9.6 28 5.0 1.7 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383319196|ref|YP_005380037.1| - 2.3 8.7 12.8 3.9 8.0 3.6 2.5 1 1 1 3 3 3 0 4Fe-4S dicluster domain CobA_CobO_BtuR PF02572.15 gi|383319197|ref|YP_005380038.1| - 1.3e-37 129.8 0.0 1.8e-37 129.2 0.0 1.2 1 1 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Ntox46 PF15538.6 gi|383319197|ref|YP_005380038.1| - 0.18 11.8 0.0 0.3 11.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial toxin 46 Ribonuc_red_lgC PF02867.15 gi|383319198|ref|YP_005380039.1| - 7.7e-161 536.2 0.0 1.6e-116 389.9 0.0 2.2 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|383319198|ref|YP_005380039.1| - 1.3e-29 102.0 0.0 5e-29 100.1 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|383319198|ref|YP_005380039.1| - 2.7e-14 53.5 0.5 8.3e-14 51.9 0.5 1.9 1 0 0 1 1 1 1 ATP cone domain PYC_OADA PF02436.18 gi|383319199|ref|YP_005380040.1| - 1.2e-53 181.8 0.4 2e-53 181.1 0.4 1.3 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|383319199|ref|YP_005380040.1| - 1.3e-46 159.4 0.0 1.8e-46 158.8 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|383319199|ref|YP_005380040.1| - 4.7e-20 71.2 6.6 1.9e-19 69.2 5.4 2.4 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|383319199|ref|YP_005380040.1| - 3.8e-10 39.4 3.5 1.3e-07 31.3 0.3 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 gi|383319199|ref|YP_005380040.1| - 6.8e-05 22.8 4.7 9.2e-05 22.3 2.4 2.2 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.6 gi|383319199|ref|YP_005380040.1| - 0.00034 21.3 2.7 0.06 14.1 0.1 3.3 3 0 0 3 3 3 1 HlyD family secretion protein HlyD_D23 PF16576.5 gi|383319199|ref|YP_005380040.1| - 0.0047 16.2 1.5 0.26 10.5 0.1 2.6 1 1 1 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion TGT PF01702.18 gi|383319199|ref|YP_005380040.1| - 0.0097 15.1 0.0 0.016 14.4 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PYNP_C PF07831.13 gi|383319199|ref|YP_005380040.1| - 0.011 15.3 1.1 0.062 13.0 0.3 2.5 2 1 1 3 3 3 0 Pyrimidine nucleoside phosphorylase C-terminal domain DUF2118 PF09891.9 gi|383319199|ref|YP_005380040.1| - 0.015 15.3 1.0 0.084 12.8 0.4 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) GCV_H PF01597.19 gi|383319199|ref|YP_005380040.1| - 0.027 14.3 5.1 0.47 10.3 1.0 2.8 2 1 1 3 3 3 0 Glycine cleavage H-protein NQRA PF05896.11 gi|383319199|ref|YP_005380040.1| - 0.029 13.8 0.6 0.048 13.1 0.6 1.3 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YqfD PF06898.11 gi|383319199|ref|YP_005380040.1| - 0.092 11.6 6.3 2 7.2 4.2 2.8 2 1 0 2 2 2 0 Putative stage IV sporulation protein YqfD ADH_zinc_N PF00107.26 gi|383319199|ref|YP_005380040.1| - 0.11 12.5 0.1 1.7 8.7 0.1 2.7 2 1 1 3 3 3 0 Zinc-binding dehydrogenase Peptidase_M23 PF01551.22 gi|383319199|ref|YP_005380040.1| - 0.4 10.9 3.2 0.87 9.8 0.4 2.5 1 1 1 2 2 2 0 Peptidase family M23 PASTA PF03793.19 gi|383319199|ref|YP_005380040.1| - 0.76 9.7 3.5 1.4 8.8 0.6 2.8 2 1 1 3 3 3 0 PASTA domain CPSase_L_D2 PF02786.17 gi|383319200|ref|YP_005380041.1| - 8.4e-79 264.0 0.0 1.3e-78 263.4 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|383319200|ref|YP_005380041.1| - 1.4e-46 157.6 0.0 2.9e-46 156.5 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|383319200|ref|YP_005380041.1| - 3.3e-42 143.0 0.0 7.1e-42 141.9 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain BPL_LplA_LipB PF03099.19 gi|383319200|ref|YP_005380041.1| - 7e-15 55.1 0.0 1.3e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Dala_Dala_lig_C PF07478.13 gi|383319200|ref|YP_005380041.1| - 1.3e-08 34.6 0.0 4.5e-08 32.9 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|383319200|ref|YP_005380041.1| - 2.3e-05 24.0 0.0 6.3e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 ATP-grasp domain BPL_C PF02237.17 gi|383319200|ref|YP_005380041.1| - 0.0001 22.1 0.1 0.00024 20.9 0.1 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB_2 PF16917.5 gi|383319200|ref|YP_005380041.1| - 0.0017 17.9 0.0 0.0049 16.4 0.0 1.7 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family ATPgrasp_Ter PF15632.6 gi|383319200|ref|YP_005380041.1| - 0.1 12.3 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon MmcB-like PF06319.12 gi|383319202|ref|YP_005380043.1| - 0.054 13.2 1.1 0.066 12.9 0.3 1.6 1 1 0 2 2 2 0 DNA repair protein MmcB-like ICL PF00463.21 gi|383319203|ref|YP_005380044.1| - 0.075 11.5 0.1 0.068 11.6 0.1 1.2 1 0 0 1 1 1 0 Isocitrate lyase family DUF2070 PF09843.9 gi|383319204|ref|YP_005380045.1| - 5.3 5.2 20.2 5.7 5.1 20.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) 4HB_MCP_1 PF12729.7 gi|383319205|ref|YP_005380046.1| - 0.07 12.7 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Rpr2 PF04032.16 gi|383319207|ref|YP_005380048.1| - 6.2e-15 55.3 0.1 7.6e-15 55.0 0.1 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Nudix_N_2 PF14803.6 gi|383319207|ref|YP_005380048.1| - 0.016 15.1 0.6 0.42 10.6 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal DZR PF12773.7 gi|383319207|ref|YP_005380048.1| - 0.033 14.2 0.1 0.054 13.5 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon LUC7 PF03194.15 gi|383319207|ref|YP_005380048.1| - 0.063 12.9 0.0 0.082 12.6 0.0 1.2 1 0 0 1 1 1 0 LUC7 N_terminus CpXC PF14353.6 gi|383319207|ref|YP_005380048.1| - 0.067 13.2 1.2 6.8 6.8 0.1 2.7 1 1 2 3 3 3 0 CpXC protein A2L_zn_ribbon PF08792.10 gi|383319207|ref|YP_005380048.1| - 0.1 12.3 1.5 7 6.5 0.2 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-RRN7 PF11781.8 gi|383319207|ref|YP_005380048.1| - 0.11 12.2 0.2 1 9.1 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 ADK_lid PF05191.14 gi|383319207|ref|YP_005380048.1| - 0.12 12.4 1.4 4.6 7.3 0.1 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF4674 PF15719.5 gi|383319207|ref|YP_005380048.1| - 0.5 10.4 0.1 0.5 10.4 0.1 2.2 1 1 1 3 3 3 0 Domain of unknown function (DUF4674) YhfH PF14149.6 gi|383319207|ref|YP_005380048.1| - 1.1 9.3 4.6 1.5 8.9 0.9 2.5 2 1 0 2 2 2 0 YhfH-like protein zf-CCHC_3 PF13917.6 gi|383319207|ref|YP_005380048.1| - 2.7 8.1 5.2 4.2 7.4 0.5 2.9 3 0 0 3 3 3 0 Zinc knuckle HHH_8 PF14716.6 gi|383319208|ref|YP_005380049.1| - 5e-24 84.4 4.5 3.2e-20 72.2 0.4 4.0 2 1 1 3 3 3 2 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|383319208|ref|YP_005380049.1| - 8.1e-11 42.4 1.7 5.4e-09 36.5 0.2 3.1 1 1 2 3 3 3 1 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.6 gi|383319208|ref|YP_005380049.1| - 2.4e-09 37.2 0.0 7e-09 35.7 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta thumb PHP PF02811.19 gi|383319208|ref|YP_005380049.1| - 1.4e-07 32.0 0.0 3.4e-07 30.7 0.0 1.8 1 0 0 1 1 1 1 PHP domain HHH PF00633.23 gi|383319208|ref|YP_005380049.1| - 8.4e-06 25.4 1.0 0.0052 16.6 0.0 3.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|383319208|ref|YP_005380049.1| - 0.0037 17.5 1.5 8.6 6.9 0.0 3.7 3 0 0 3 3 3 1 IMS family HHH motif Cdd1 PF11731.8 gi|383319208|ref|YP_005380049.1| - 0.009 16.2 0.0 1.4 9.2 0.0 2.5 1 1 1 2 2 2 2 Pathogenicity locus RNase_P_p30 PF01876.16 gi|383319208|ref|YP_005380049.1| - 0.2 11.1 0.0 0.41 10.1 0.0 1.5 1 0 0 1 1 1 0 RNase P subunit p30 LigT_PEase PF02834.16 gi|383319209|ref|YP_005380050.1| - 9.5e-27 93.0 0.0 3.9e-14 52.6 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|383319209|ref|YP_005380050.1| - 3.1e-10 40.1 0.0 4.1e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|383319209|ref|YP_005380050.1| - 0.00012 22.1 0.0 0.00016 21.6 0.0 1.3 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain tRNA_NucTransf2 PF09249.11 gi|383319210|ref|YP_005380051.1| - 1.9e-43 147.3 0.0 1.7e-42 144.2 0.0 2.1 2 0 0 2 2 2 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|383319210|ref|YP_005380051.1| - 5.8e-15 55.4 0.0 1.1e-14 54.5 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|383319210|ref|YP_005380051.1| - 1.6e-05 25.2 0.0 4.3e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DUF357 PF04010.13 gi|383319210|ref|YP_005380051.1| - 0.071 13.2 0.5 0.18 11.9 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF357) TrmB PF01978.19 gi|383319211|ref|YP_005380052.1| - 0.00017 21.4 0.1 0.00029 20.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB SMC_ScpB PF04079.16 gi|383319211|ref|YP_005380052.1| - 0.0016 18.1 0.1 0.0023 17.6 0.1 1.3 1 1 0 1 1 1 1 Segregation and condensation complex subunit ScpB PadR PF03551.14 gi|383319211|ref|YP_005380052.1| - 0.045 13.7 0.0 0.094 12.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|383319211|ref|YP_005380052.1| - 0.053 13.4 0.0 0.085 12.8 0.0 1.4 1 0 0 1 1 1 0 MarR family NTP_transf_2 PF01909.23 gi|383319212|ref|YP_005380053.1| - 6.6e-08 32.8 0.0 1.1e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|383319212|ref|YP_005380053.1| - 0.00013 21.9 0.0 0.00021 21.3 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase CutA1 PF03091.15 gi|383319213|ref|YP_005380054.1| - 8.4e-34 115.4 0.1 9.5e-34 115.2 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Peptidase_M50 PF02163.22 gi|383319214|ref|YP_005380055.1| - 2.2e-23 82.8 1.1 2.1e-22 79.6 1.1 2.1 1 1 0 1 1 1 1 Peptidase family M50 PDZ_6 PF17820.1 gi|383319214|ref|YP_005380055.1| - 2.4e-17 62.5 0.0 1.7e-09 37.4 0.0 2.4 2 0 0 2 2 2 2 PDZ domain PDZ_2 PF13180.6 gi|383319214|ref|YP_005380055.1| - 5.4e-16 58.7 0.2 4.6e-07 30.1 0.1 2.4 1 1 1 2 2 2 2 PDZ domain PDZ PF00595.24 gi|383319214|ref|YP_005380055.1| - 5e-10 39.6 0.3 9e-05 22.8 0.0 2.4 1 1 1 2 2 2 2 PDZ domain Tricorn_PDZ PF14685.6 gi|383319214|ref|YP_005380055.1| - 0.0013 18.7 0.1 0.98 9.4 0.0 2.3 2 0 0 2 2 2 2 Tricorn protease PDZ domain PDZ_1 PF12812.7 gi|383319214|ref|YP_005380055.1| - 0.018 15.0 0.0 0.92 9.6 0.0 2.8 2 1 1 3 3 3 0 PDZ-like domain Radical_SAM PF04055.21 gi|383319216|ref|YP_005380057.1| - 9.1e-20 71.7 0.0 2.3e-19 70.4 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|383319216|ref|YP_005380057.1| - 2.6e-10 40.4 0.0 4.7e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain MarR_2 PF12802.7 gi|383319217|ref|YP_005380058.1| - 0.022 14.7 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|383319217|ref|YP_005380058.1| - 0.06 13.2 0.1 0.091 12.7 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Asp5 PF17000.5 gi|383319217|ref|YP_005380058.1| - 0.11 12.6 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Accessory secretory protein Sec, Asp5 HTH_17 PF12728.7 gi|383319217|ref|YP_005380058.1| - 0.13 12.5 0.2 0.2 11.9 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PA14 PF07691.12 gi|383319218|ref|YP_005380059.1| - 1.2e-12 47.8 0.0 2e-12 47.1 0.0 1.4 1 1 0 1 1 1 1 PA14 domain GLEYA PF10528.9 gi|383319218|ref|YP_005380059.1| - 0.0014 19.0 0.4 0.0054 17.1 0.0 2.2 2 1 0 2 2 2 1 GLEYA domain DUF1579 PF07617.11 gi|383319218|ref|YP_005380059.1| - 0.1 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1579) Pilin_N PF07790.11 gi|383319219|ref|YP_005380060.1| - 1.8e-08 35.2 0.1 3.3e-08 34.3 0.1 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Metallophos_2 PF12850.7 gi|383319220|ref|YP_005380061.1| - 1.3e-20 74.3 0.0 2.1e-20 73.6 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|383319220|ref|YP_005380061.1| - 2.3e-15 57.7 0.0 3.9e-15 56.9 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|383319220|ref|YP_005380061.1| - 5.8e-12 45.5 0.0 1.8e-07 30.8 0.0 2.6 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily DUF2102 PF09875.9 gi|383319221|ref|YP_005380062.1| - 1.5e-11 43.9 0.1 1.8e-11 43.6 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) DUF835 PF05763.12 gi|383319222|ref|YP_005380063.1| - 0.00079 19.2 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) ATPase PF06745.13 gi|383319223|ref|YP_005380064.1| - 8.5e-16 58.0 0.0 7.5e-13 48.4 0.0 2.3 2 0 0 2 2 2 2 KaiC Robl_LC7 PF03259.17 gi|383319223|ref|YP_005380064.1| - 1.9e-11 43.6 0.6 1.9e-11 43.6 0.6 2.4 3 0 0 3 3 3 1 Roadblock/LC7 domain Arf PF00025.21 gi|383319223|ref|YP_005380064.1| - 2.2e-09 37.0 0.0 3.6e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|383319223|ref|YP_005380064.1| - 7.5e-07 28.9 0.2 3e-06 26.9 0.2 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|383319223|ref|YP_005380064.1| - 3.6e-06 27.0 0.0 1.1e-05 25.5 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|383319223|ref|YP_005380064.1| - 5.2e-05 23.2 0.3 0.18 11.5 0.0 2.3 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|383319223|ref|YP_005380064.1| - 8.1e-05 22.8 0.0 0.00015 21.9 0.0 1.5 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|383319223|ref|YP_005380064.1| - 0.00016 21.3 0.0 0.00027 20.6 0.0 1.4 1 0 0 1 1 1 1 Ras family SRPRB PF09439.10 gi|383319223|ref|YP_005380064.1| - 0.00019 20.9 0.0 0.00041 19.8 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AAA_29 PF13555.6 gi|383319223|ref|YP_005380064.1| - 0.0017 18.0 0.2 0.0057 16.4 0.2 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|383319223|ref|YP_005380064.1| - 0.0034 17.8 0.0 0.008 16.6 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain Gtr1_RagA PF04670.12 gi|383319223|ref|YP_005380064.1| - 0.012 15.0 0.0 0.06 12.7 0.0 2.1 3 0 0 3 3 3 0 Gtr1/RagA G protein conserved region NTPase_1 PF03266.15 gi|383319223|ref|YP_005380064.1| - 0.012 15.5 0.2 0.031 14.2 0.1 1.7 2 0 0 2 2 1 0 NTPase AAA_33 PF13671.6 gi|383319223|ref|YP_005380064.1| - 0.014 15.6 0.0 0.024 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|383319223|ref|YP_005380064.1| - 0.016 15.4 0.1 0.038 14.2 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|383319223|ref|YP_005380064.1| - 0.025 14.3 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|383319223|ref|YP_005380064.1| - 0.028 15.0 0.1 0.057 14.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|383319223|ref|YP_005380064.1| - 0.046 14.0 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|383319223|ref|YP_005380064.1| - 0.054 13.4 0.2 1.6 8.6 0.0 2.2 1 1 1 2 2 2 0 RsgA GTPase MEDS PF14417.6 gi|383319223|ref|YP_005380064.1| - 0.075 12.9 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain T2SSE PF00437.20 gi|383319223|ref|YP_005380064.1| - 0.094 11.8 0.2 0.16 11.0 0.2 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.18 gi|383319223|ref|YP_005380064.1| - 0.1 11.9 0.0 0.22 10.8 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family MutS_V PF00488.21 gi|383319223|ref|YP_005380064.1| - 0.12 12.4 0.1 0.23 11.4 0.1 1.5 1 0 0 1 1 1 0 MutS domain V cobW PF02492.19 gi|383319223|ref|YP_005380064.1| - 0.16 11.6 0.5 0.74 9.4 0.1 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PAXNEB PF05625.11 gi|383319223|ref|YP_005380064.1| - 0.23 10.5 0.0 0.34 10.0 0.0 1.1 1 0 0 1 1 1 0 PAXNEB protein HSP20 PF00011.21 gi|383319224|ref|YP_005380065.1| - 4.9e-23 81.2 0.7 6.1e-23 80.9 0.7 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|383319224|ref|YP_005380065.1| - 2.9e-14 52.4 0.1 4.8e-14 51.7 0.1 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|383319224|ref|YP_005380065.1| - 0.00072 20.5 0.0 0.001 20.0 0.0 1.2 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|383319224|ref|YP_005380065.1| - 0.04 14.0 0.3 0.17 12.0 0.2 1.9 2 0 0 2 2 2 0 GvpH FKBP26_C PF18046.1 gi|383319224|ref|YP_005380065.1| - 0.043 13.9 0.8 9.1 6.5 0.1 2.3 2 0 0 2 2 2 0 FKBP26_C-terminal G2F PF07474.12 gi|383319224|ref|YP_005380065.1| - 0.19 11.5 0.0 0.52 10.1 0.0 1.7 1 1 1 2 2 2 0 G2F domain VHL_C PF17211.3 gi|383319225|ref|YP_005380066.1| - 0.0098 15.9 0.1 1.7 8.7 0.0 2.4 2 0 0 2 2 2 2 VHL box domain Anemone_cytotox PF06369.12 gi|383319225|ref|YP_005380066.1| - 0.092 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Sea anemone cytotoxic protein NRDD PF13597.6 gi|383319226|ref|YP_005380067.1| - 7.8e-161 536.6 0.0 9.2e-161 536.4 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.16 gi|383319226|ref|YP_005380067.1| - 2.1e-12 47.5 0.0 0.00012 22.5 0.0 2.4 2 0 0 2 2 2 2 ATP cone domain Pribosyl_synth PF14572.6 gi|383319226|ref|YP_005380067.1| - 0.1 12.7 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain DUF35_N PF12172.8 gi|383319226|ref|YP_005380067.1| - 0.14 12.1 0.3 0.27 11.1 0.3 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_pol3_gamma3 PF12169.8 gi|383319226|ref|YP_005380067.1| - 0.16 11.9 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III DUF1272 PF06906.11 gi|383319226|ref|YP_005380067.1| - 0.21 11.7 1.0 0.46 10.6 1.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.6 gi|383319226|ref|YP_005380067.1| - 0.33 10.4 3.2 0.7 9.4 3.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|383319226|ref|YP_005380067.1| - 0.99 9.0 5.0 4.2 7.0 0.6 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding Radical_SAM PF04055.21 gi|383319227|ref|YP_005380068.1| - 1.6e-16 61.2 0.0 2.6e-16 60.5 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|383319227|ref|YP_005380068.1| - 2.5e-11 44.0 0.0 3.3e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|383319227|ref|YP_005380068.1| - 2e-06 27.9 0.0 3.1e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain AAA_17 PF13207.6 gi|383319229|ref|YP_005380070.1| - 8.4e-20 71.6 0.1 1.8e-19 70.5 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|383319229|ref|YP_005380070.1| - 2.8e-13 50.5 0.0 5.7e-13 49.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA_binding PF01877.17 gi|383319229|ref|YP_005380070.1| - 4.5e-13 49.5 0.0 2.3e-12 47.2 0.0 2.1 2 0 0 2 2 2 1 RNA binding AAA_33 PF13671.6 gi|383319229|ref|YP_005380070.1| - 1.4e-07 31.7 0.0 2.4e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|383319229|ref|YP_005380070.1| - 0.00075 19.6 0.1 0.0015 18.7 0.1 1.6 1 1 0 1 1 1 1 Adenylate kinase LexA_DNA_bind PF01726.16 gi|383319229|ref|YP_005380070.1| - 0.042 13.6 0.0 29 4.5 0.0 3.2 3 0 0 3 3 3 0 LexA DNA binding domain Zeta_toxin PF06414.12 gi|383319229|ref|YP_005380070.1| - 0.048 12.9 0.0 0.094 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Cytidylate_kin2 PF13189.6 gi|383319229|ref|YP_005380070.1| - 0.15 12.2 0.0 5.7 7.0 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family AP_endonuc_2 PF01261.24 gi|383319230|ref|YP_005380071.1| - 7.3e-26 90.9 0.0 9.9e-26 90.5 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel MFS_1 PF07690.16 gi|383319231|ref|YP_005380072.1| - 4.7e-33 114.6 61.6 4.9e-25 88.2 25.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|383319231|ref|YP_005380072.1| - 0.0005 19.0 21.5 0.00053 18.9 20.7 1.5 1 1 0 1 1 1 1 MFS_1 like family OATP PF03137.20 gi|383319231|ref|YP_005380072.1| - 0.0026 16.2 8.2 0.14 10.5 2.2 2.3 2 0 0 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family HIT PF01230.23 gi|383319232|ref|YP_005380073.1| - 0.015 16.0 0.2 0.024 15.4 0.2 1.2 1 0 0 1 1 1 0 HIT domain Spore_GerQ PF09671.10 gi|383319232|ref|YP_005380073.1| - 0.021 14.8 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 Spore coat protein (Spore_GerQ) ABC_tran PF00005.27 gi|383319233|ref|YP_005380074.1| - 3.8e-31 108.4 0.0 6.1e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383319233|ref|YP_005380074.1| - 1.8e-09 37.9 1.7 3.3e-06 27.1 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|383319233|ref|YP_005380074.1| - 0.0032 17.2 0.0 0.011 15.5 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|383319233|ref|YP_005380074.1| - 0.0043 17.6 0.0 0.0074 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|383319233|ref|YP_005380074.1| - 0.0064 16.2 0.2 0.012 15.3 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|383319233|ref|YP_005380074.1| - 0.016 14.6 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|383319233|ref|YP_005380074.1| - 0.017 15.4 0.1 0.069 13.4 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|383319233|ref|YP_005380074.1| - 0.03 13.0 0.2 0.49 9.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF4162 PF13732.6 gi|383319233|ref|YP_005380074.1| - 0.039 14.7 0.0 0.11 13.3 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) DUF1447 PF07288.11 gi|383319233|ref|YP_005380074.1| - 0.059 13.4 0.0 0.15 12.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1447) FAD_binding_1 PF00667.20 gi|383319233|ref|YP_005380074.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain AAA_27 PF13514.6 gi|383319233|ref|YP_005380074.1| - 0.15 11.6 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.7 gi|383319234|ref|YP_005380075.1| - 3.6e-07 29.6 20.6 3.6e-07 29.6 20.6 2.4 1 1 1 2 2 2 1 ABC-2 family transporter protein BDHCT_assoc PF16204.5 gi|383319234|ref|YP_005380075.1| - 0.26 11.0 1.2 0.41 10.3 1.2 1.2 1 0 0 1 1 1 0 BDHCT-box associated domain on Bloom syndrome protein ABC2_membrane_3 PF12698.7 gi|383319235|ref|YP_005380076.1| - 1.7e-18 66.9 15.8 8e-18 64.6 15.5 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383319235|ref|YP_005380076.1| - 3.1e-15 56.2 10.0 4.4e-15 55.7 9.6 1.4 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383319235|ref|YP_005380076.1| - 7.7e-07 28.9 13.2 7.7e-07 28.9 13.2 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319235|ref|YP_005380076.1| - 0.00024 21.1 9.9 0.00024 21.1 9.9 3.2 2 1 0 2 2 2 1 ABC-2 family transporter protein Lactamase_B_2 PF12706.7 gi|383319236|ref|YP_005380077.1| - 1.3e-17 64.0 0.0 1.7e-17 63.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|383319236|ref|YP_005380077.1| - 2.2e-06 27.8 0.0 3.9e-06 27.0 0.0 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|383319236|ref|YP_005380077.1| - 8.5e-05 22.5 0.0 0.00012 22.0 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF2326 PF10088.9 gi|383319236|ref|YP_005380077.1| - 0.21 11.3 0.0 18 5.0 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein conserved in bacteria (DUF2326) stn_TNFRSF12A PF12191.8 gi|383319237|ref|YP_005380078.1| - 0.014 15.6 0.0 0.026 14.8 0.0 1.4 1 0 0 1 1 1 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain Putative_PNPOx PF01243.20 gi|383319238|ref|YP_005380079.1| - 2.1e-15 56.7 0.0 2.6e-15 56.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|383319238|ref|YP_005380079.1| - 1.1e-05 25.1 0.0 1.3e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like STI1 PF17830.1 gi|383319238|ref|YP_005380079.1| - 0.059 13.3 0.1 0.15 12.0 0.0 1.7 2 0 0 2 2 2 0 STI1 domain Response_reg PF00072.24 gi|383319239|ref|YP_005380080.1| - 8.5e-18 64.6 1.7 1.2e-17 64.1 0.6 1.8 2 1 0 2 2 2 1 Response regulator receiver domain MetOD2 PF18548.1 gi|383319239|ref|YP_005380080.1| - 1.8e-11 44.0 3.0 1.8e-11 44.0 3.0 1.8 2 0 0 2 2 2 1 Metanogen output domain 2 Fer4 PF00037.27 gi|383319240|ref|YP_005380081.1| - 1.1e-14 53.5 14.9 2e-08 33.7 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383319240|ref|YP_005380081.1| - 2.3e-12 47.3 7.2 5.2e-07 30.1 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383319240|ref|YP_005380081.1| - 8.4e-12 45.0 23.0 1.3e-07 31.6 13.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383319240|ref|YP_005380081.1| - 3.1e-11 42.9 14.5 5.7e-06 26.2 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|383319240|ref|YP_005380081.1| - 2.2e-09 38.1 13.0 8e-07 29.9 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|383319240|ref|YP_005380081.1| - 5.5e-09 36.0 14.1 9.4e-09 35.3 14.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383319240|ref|YP_005380081.1| - 6.1e-09 36.3 6.5 0.00012 22.6 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383319240|ref|YP_005380081.1| - 1e-08 35.1 12.9 1.5e-08 34.6 12.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383319240|ref|YP_005380081.1| - 4.3e-08 32.8 12.0 0.00029 20.7 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|383319240|ref|YP_005380081.1| - 2.1e-07 31.3 8.2 0.00047 20.5 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383319240|ref|YP_005380081.1| - 1.6e-06 28.1 13.7 0.0011 19.3 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|383319240|ref|YP_005380081.1| - 0.0001 23.0 19.8 0.0043 17.9 4.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|383319240|ref|YP_005380081.1| - 0.0052 17.0 11.9 0.0081 16.3 3.5 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|383319240|ref|YP_005380081.1| - 0.023 15.5 13.2 0.15 12.9 2.1 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383319240|ref|YP_005380081.1| - 0.064 14.0 15.5 0.76 10.6 0.9 3.2 2 2 1 3 3 3 0 4Fe-4S single cluster domain LsmAD PF06741.13 gi|383319240|ref|YP_005380081.1| - 0.15 12.6 0.4 0.25 11.9 0.4 1.4 1 0 0 1 1 1 0 LsmAD domain Fer4_13 PF13370.6 gi|383319240|ref|YP_005380081.1| - 0.41 11.2 16.3 0.4 11.3 3.5 3.0 2 2 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I zf-C2H2_11 PF16622.5 gi|383319240|ref|YP_005380081.1| - 4.6 7.1 10.8 7.5 6.4 1.9 2.6 2 0 0 2 2 2 0 zinc-finger C2H2-type Complex1_49kDa PF00346.19 gi|383319241|ref|YP_005380082.1| - 2e-61 207.5 0.2 1.8e-47 161.7 0.1 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|383319241|ref|YP_005380082.1| - 1.8e-11 43.6 3.7 5.2e-11 42.1 0.1 2.8 4 0 0 4 4 4 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|383319242|ref|YP_005380083.1| - 1.4e-11 45.1 0.0 1.6e-11 44.9 0.0 1.0 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF881 PF05949.12 gi|383319242|ref|YP_005380083.1| - 0.0054 16.6 0.0 0.0061 16.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF881) Oxidored_q6 PF01058.22 gi|383319243|ref|YP_005380084.1| - 4.5e-27 94.5 2.0 1.1e-26 93.2 1.9 1.6 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NADHdh PF00146.21 gi|383319244|ref|YP_005380085.1| - 6.2e-50 170.2 20.8 8.4e-50 169.8 20.8 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|383319245|ref|YP_005380086.1| - 4.8e-60 203.2 27.4 4.8e-60 203.2 27.4 2.8 4 0 0 4 4 4 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|383319245|ref|YP_005380086.1| - 3.7e-12 46.1 1.6 3.7e-12 46.1 1.6 3.7 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Hydrolase_3 PF08282.12 gi|383319246|ref|YP_005380087.1| - 6.7e-25 88.3 0.0 1.9e-14 54.0 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|383319246|ref|YP_005380087.1| - 6.7e-08 32.4 0.0 0.00014 21.5 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|383319246|ref|YP_005380087.1| - 0.00041 20.8 1.0 0.1 13.0 0.3 2.6 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|383319246|ref|YP_005380087.1| - 0.0046 17.3 0.0 2.5 8.3 0.0 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase ISN1 PF06437.11 gi|383319246|ref|YP_005380087.1| - 0.055 12.4 0.0 0.076 11.9 0.0 1.2 1 0 0 1 1 1 0 IMP-specific 5'-nucleotidase HAD_2 PF13419.6 gi|383319246|ref|YP_005380087.1| - 0.14 12.3 0.0 9.6 6.3 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Glyco_hydro_15 PF00723.21 gi|383319247|ref|YP_005380088.1| - 7e-40 137.1 0.0 5.4e-35 121.0 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 DUF608 PF04685.13 gi|383319247|ref|YP_005380088.1| - 0.084 12.0 0.3 0.17 11.0 0.1 1.5 2 0 0 2 2 2 0 Glycosyl-hydrolase family 116, catalytic region Glycos_transf_1 PF00534.20 gi|383319248|ref|YP_005380089.1| - 7.7e-45 152.5 0.0 1.1e-44 152.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383319248|ref|YP_005380089.1| - 3.7e-28 98.6 0.0 6e-28 97.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383319248|ref|YP_005380089.1| - 1.5e-16 60.8 0.1 2.6e-15 56.8 0.1 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|383319248|ref|YP_005380089.1| - 8.1e-10 39.4 0.0 2.2e-09 38.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|383319248|ref|YP_005380089.1| - 8.7e-09 35.7 0.0 6.9e-08 32.8 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|383319248|ref|YP_005380089.1| - 0.00016 20.5 0.0 0.025 13.3 0.1 2.2 2 0 0 2 2 2 2 Glycosyltransferase family 20 tRNA-synt_2 PF00152.20 gi|383319249|ref|YP_005380090.1| - 3.3e-84 282.7 0.0 3.9e-84 282.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|383319249|ref|YP_005380090.1| - 2.6e-12 46.6 0.1 4.8e-12 45.7 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TFCD_C PF12612.8 gi|383319250|ref|YP_005380091.1| - 0.11 12.4 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Tubulin folding cofactor D C terminal RCC1 PF00415.18 gi|383319251|ref|YP_005380092.1| - 4.7e-69 228.8 30.3 8.5e-14 51.9 0.5 8.3 7 2 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383319251|ref|YP_005380092.1| - 1.2e-59 197.0 48.5 5.2e-11 42.0 3.7 7.4 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat LytB_WW PF18342.1 gi|383319251|ref|YP_005380092.1| - 0.13 12.4 0.2 5 7.3 0.0 2.5 2 0 0 2 2 2 0 Endo-beta-N-acetylglucosaminidase LytB WW domain DUF1459 PF07312.11 gi|383319251|ref|YP_005380092.1| - 1.9 8.8 32.0 2.8 8.2 0.2 7.0 8 0 0 8 8 8 0 Protein of unknown function (DUF1459) Aminotran_1_2 PF00155.21 gi|383319252|ref|YP_005380093.1| - 1.2e-70 238.5 0.0 1.4e-70 238.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|383319252|ref|YP_005380093.1| - 8.8e-11 41.7 0.1 1.3e-10 41.2 0.1 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|383319252|ref|YP_005380093.1| - 2.2e-06 26.9 0.0 4.2e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|383319252|ref|YP_005380093.1| - 0.0015 17.1 0.0 0.0023 16.5 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|383319252|ref|YP_005380093.1| - 0.0039 16.0 0.0 0.0068 15.2 0.0 1.4 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Beta_elim_lyase PF01212.21 gi|383319252|ref|YP_005380093.1| - 0.0076 15.6 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase AsnC_trans_reg PF01037.21 gi|383319253|ref|YP_005380094.1| - 9.6e-16 57.5 0.1 2.4e-15 56.3 0.1 1.7 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|383319253|ref|YP_005380094.1| - 2.7e-11 42.8 0.3 4.7e-11 42.1 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|383319253|ref|YP_005380094.1| - 2.8e-07 30.3 0.1 9.5e-07 28.6 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|383319253|ref|YP_005380094.1| - 3e-05 23.9 0.1 6e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|383319253|ref|YP_005380094.1| - 5.3e-05 23.0 0.1 0.00011 22.0 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|383319253|ref|YP_005380094.1| - 5.6e-05 22.9 0.1 0.00021 21.1 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|383319253|ref|YP_005380094.1| - 7e-05 22.7 0.2 0.00013 21.9 0.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|383319253|ref|YP_005380094.1| - 0.00029 20.6 0.0 0.00055 19.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|383319253|ref|YP_005380094.1| - 0.00031 21.0 0.1 0.0058 16.9 0.1 2.5 3 0 0 3 3 3 1 Transcriptional regulator MarR PF01047.22 gi|383319253|ref|YP_005380094.1| - 0.00047 20.0 0.3 0.0011 18.8 0.1 1.6 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|383319253|ref|YP_005380094.1| - 0.00057 19.7 0.1 0.00085 19.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RepL PF05732.11 gi|383319253|ref|YP_005380094.1| - 0.0012 18.3 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_29 PF13551.6 gi|383319253|ref|YP_005380094.1| - 0.0016 18.4 0.0 0.0029 17.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Mga PF08280.11 gi|383319253|ref|YP_005380094.1| - 0.0047 16.9 0.1 0.0095 16.0 0.1 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain DUF2250 PF10007.9 gi|383319253|ref|YP_005380094.1| - 0.0071 16.4 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) FaeA PF04703.12 gi|383319253|ref|YP_005380094.1| - 0.0073 16.7 0.1 0.014 15.8 0.1 1.4 1 0 0 1 1 1 1 FaeA-like protein HTH_28 PF13518.6 gi|383319253|ref|YP_005380094.1| - 0.0076 16.3 0.1 0.038 14.1 0.0 2.3 2 1 1 3 3 1 1 Helix-turn-helix domain HTH_9 PF08221.11 gi|383319253|ref|YP_005380094.1| - 0.0089 16.1 0.0 0.018 15.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain GerE PF00196.19 gi|383319253|ref|YP_005380094.1| - 0.01 15.4 0.0 0.3 10.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_36 PF13730.6 gi|383319253|ref|YP_005380094.1| - 0.016 15.1 0.0 0.055 13.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_rep_O PF04492.13 gi|383319253|ref|YP_005380094.1| - 0.02 15.5 0.0 0.04 14.5 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage replication protein O HTH_Tnp_ISL3 PF13542.6 gi|383319253|ref|YP_005380094.1| - 0.026 14.0 0.0 1.5 8.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.12 gi|383319253|ref|YP_005380094.1| - 0.03 14.1 0.2 0.048 13.4 0.2 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|383319253|ref|YP_005380094.1| - 0.035 14.0 0.2 0.06 13.2 0.2 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_20 PF12840.7 gi|383319253|ref|YP_005380094.1| - 0.041 14.0 0.1 0.064 13.3 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|383319253|ref|YP_005380094.1| - 0.043 14.0 0.1 0.15 12.3 0.1 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain FeoC PF09012.10 gi|383319253|ref|YP_005380094.1| - 0.056 13.5 0.2 0.39 10.8 0.2 2.1 2 0 0 2 2 2 0 FeoC like transcriptional regulator SelB-wing_2 PF09106.11 gi|383319253|ref|YP_005380094.1| - 0.061 13.5 0.0 0.7 10.1 0.0 2.2 1 1 1 2 2 2 0 Elongation factor SelB, winged helix RPA_C PF08784.11 gi|383319253|ref|YP_005380094.1| - 0.061 14.0 0.0 0.13 12.9 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal NYN PF01936.18 gi|383319253|ref|YP_005380094.1| - 0.066 13.7 0.2 1.3 9.5 0.2 2.3 1 1 0 1 1 1 0 NYN domain Sigma70_r4_2 PF08281.12 gi|383319253|ref|YP_005380094.1| - 0.066 12.9 0.1 0.16 11.7 0.1 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 AsnC_trans_reg2 PF17805.1 gi|383319253|ref|YP_005380094.1| - 0.07 13.3 0.3 1.8 8.8 0.0 2.5 2 1 0 2 2 2 0 AsnC-like ligand binding domain HTH_10 PF04967.12 gi|383319253|ref|YP_005380094.1| - 0.086 12.7 0.2 0.32 10.8 0.1 2.0 3 0 0 3 3 2 0 HTH DNA binding domain Dimerisation2 PF16864.5 gi|383319253|ref|YP_005380094.1| - 0.13 12.2 0.0 0.35 10.9 0.0 1.7 2 0 0 2 2 1 0 Dimerisation domain HTH_6 PF01418.17 gi|383319253|ref|YP_005380094.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family DUF3134 PF11332.8 gi|383319253|ref|YP_005380094.1| - 0.19 12.1 1.3 0.24 11.8 0.2 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF3134) Rib_5-P_isom_A PF06026.14 gi|383319254|ref|YP_005380095.1| - 9.4e-59 197.9 0.0 1.1e-58 197.6 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|383319254|ref|YP_005380095.1| - 2.3e-05 24.4 0.1 0.00012 22.0 0.0 1.9 2 0 0 2 2 2 1 DeoR C terminal sensor domain AbfS_sensor PF18225.1 gi|383319254|ref|YP_005380095.1| - 0.0049 16.7 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 Sensor histidine kinase (AbfS) sensor domain AIRS_C PF02769.22 gi|383319255|ref|YP_005380096.1| - 5.8e-28 98.0 2.3 8.7e-28 97.4 2.3 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|383319255|ref|YP_005380096.1| - 2.4e-18 66.6 0.2 7.6e-18 65.0 0.1 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain HypA PF01155.19 gi|383319256|ref|YP_005380097.1| - 1.2e-29 102.5 0.2 1.4e-29 102.4 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|383319256|ref|YP_005380097.1| - 0.028 14.4 3.7 0.053 13.5 3.3 1.6 1 1 1 2 2 2 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|383319256|ref|YP_005380097.1| - 0.065 13.0 3.0 0.13 12.0 3.0 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|383319256|ref|YP_005380097.1| - 0.33 10.7 8.3 0.97 9.2 8.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.9 gi|383319256|ref|YP_005380097.1| - 0.4 10.8 5.8 1.1 9.4 0.5 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HupF_HypC PF01455.18 gi|383319257|ref|YP_005380098.1| - 5.6e-23 80.9 0.2 6.8e-23 80.6 0.2 1.1 1 0 0 1 1 1 1 HupF/HypC family Recep_L_domain PF01030.24 gi|383319257|ref|YP_005380098.1| - 0.13 12.4 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Receptor L domain Nre_N PF04894.12 gi|383319259|ref|YP_005380100.1| - 4.6e-95 318.5 0.0 5.8e-95 318.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|383319259|ref|YP_005380100.1| - 2e-33 114.6 0.0 3.1e-33 114.0 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal CarS-like PF01864.17 gi|383319261|ref|YP_005380102.1| - 1.6e-53 181.3 4.3 1.8e-53 181.1 4.3 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|383319261|ref|YP_005380102.1| - 5.8e-07 29.5 0.8 5.8e-07 29.5 0.8 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family Pribosyltran PF00156.27 gi|383319262|ref|YP_005380103.1| - 2.6e-09 36.8 1.3 3.6e-09 36.3 1.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GARS_A PF01071.19 gi|383319263|ref|YP_005380104.1| - 8.3e-56 188.8 0.1 1.2e-55 188.3 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|383319263|ref|YP_005380104.1| - 6.2e-25 87.8 0.0 1.4e-24 86.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|383319263|ref|YP_005380104.1| - 3.4e-14 52.9 0.1 2.1e-13 50.4 0.0 2.3 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|383319263|ref|YP_005380104.1| - 0.0005 20.2 0.0 0.0029 17.7 0.0 2.2 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|383319263|ref|YP_005380104.1| - 0.0062 16.1 0.0 0.031 13.9 0.1 2.1 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|383319263|ref|YP_005380104.1| - 0.0094 15.5 0.0 0.13 11.7 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|383319263|ref|YP_005380104.1| - 0.045 13.0 0.0 0.082 12.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp Pyr_redox_2 PF07992.14 gi|383319264|ref|YP_005380105.1| - 2.2e-55 188.0 2.3 3.1e-55 187.5 2.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|383319264|ref|YP_005380105.1| - 2.5e-22 79.2 0.1 3e-19 69.4 0.1 3.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|383319264|ref|YP_005380105.1| - 1.2e-14 54.5 0.0 3.2e-14 53.1 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FAD_binding_2 PF00890.24 gi|383319264|ref|YP_005380105.1| - 6.3e-12 45.3 0.1 0.0013 17.9 0.0 3.5 3 1 0 3 3 3 3 FAD binding domain DAO PF01266.24 gi|383319264|ref|YP_005380105.1| - 2.1e-11 44.0 7.7 0.023 14.3 0.1 4.2 3 1 1 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|383319264|ref|YP_005380105.1| - 7e-11 41.9 0.0 1.7e-09 37.3 0.0 2.3 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|383319264|ref|YP_005380105.1| - 3.2e-07 29.8 0.1 0.00015 21.1 0.0 2.6 2 0 0 2 2 2 2 Thi4 family HI0933_like PF03486.14 gi|383319264|ref|YP_005380105.1| - 3.3e-07 29.4 0.8 0.072 11.8 0.0 4.3 4 1 1 5 5 5 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|383319264|ref|YP_005380105.1| - 7e-06 26.2 0.0 0.2 11.9 0.0 2.9 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|383319264|ref|YP_005380105.1| - 2.9e-05 23.5 0.2 0.0012 18.1 0.1 2.4 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|383319264|ref|YP_005380105.1| - 4.5e-05 22.7 0.9 0.34 9.9 0.0 3.3 3 0 0 3 3 3 2 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|383319264|ref|YP_005380105.1| - 0.00058 18.8 0.2 1.1 8.1 0.0 3.0 3 0 0 3 3 3 2 Tryptophan halogenase GIDA PF01134.22 gi|383319264|ref|YP_005380105.1| - 0.0011 18.2 2.5 0.37 9.8 0.0 3.3 4 1 1 5 5 5 2 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|383319264|ref|YP_005380105.1| - 0.0055 17.1 0.6 0.03 14.7 0.1 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|383319264|ref|YP_005380105.1| - 0.0071 15.7 0.9 2.6 7.3 0.0 3.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|383319264|ref|YP_005380105.1| - 0.012 15.6 6.2 4.4 7.3 0.1 3.9 3 1 1 4 4 4 0 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|383319264|ref|YP_005380105.1| - 0.019 14.1 0.0 0.47 9.6 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.18 gi|383319264|ref|YP_005380105.1| - 0.057 13.3 0.2 0.16 11.9 0.1 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|383319264|ref|YP_005380105.1| - 0.17 11.1 0.1 4.4 6.5 0.0 2.4 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase HTH_IclR PF09339.10 gi|383319265|ref|YP_005380106.1| - 9.3e-05 22.2 0.1 0.00019 21.1 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|383319265|ref|YP_005380106.1| - 0.0018 18.1 0.3 0.0029 17.4 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FaeA PF04703.12 gi|383319265|ref|YP_005380106.1| - 0.0026 18.1 0.0 0.0042 17.4 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein HTH_24 PF13412.6 gi|383319265|ref|YP_005380106.1| - 0.0093 15.5 0.1 0.015 14.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|383319265|ref|YP_005380106.1| - 0.012 15.4 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|383319265|ref|YP_005380106.1| - 0.014 15.4 0.1 0.033 14.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|383319265|ref|YP_005380106.1| - 0.023 14.6 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF977 PF06163.11 gi|383319265|ref|YP_005380106.1| - 0.032 14.2 0.1 0.035 14.0 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Rrf2 PF02082.20 gi|383319265|ref|YP_005380106.1| - 0.063 13.6 0.1 0.088 13.2 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator MerR PF00376.23 gi|383319265|ref|YP_005380106.1| - 0.071 12.9 0.0 2.2 8.1 0.0 2.3 2 0 0 2 2 2 0 MerR family regulatory protein EPSP_synthase PF00275.20 gi|383319266|ref|YP_005380107.1| - 5.1e-111 371.3 0.1 5.9e-111 371.1 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Chorismate_synt PF01264.21 gi|383319267|ref|YP_005380108.1| - 4.5e-143 475.9 1.8 5.2e-143 475.7 1.8 1.0 1 0 0 1 1 1 1 Chorismate synthase HAD_2 PF13419.6 gi|383319268|ref|YP_005380109.1| - 5e-33 114.7 0.0 6.3e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|383319268|ref|YP_005380109.1| - 4.1e-18 66.4 0.3 2.9e-17 63.7 0.3 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|383319268|ref|YP_005380109.1| - 2e-06 28.3 0.0 3.4e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|383319268|ref|YP_005380109.1| - 4e-05 23.7 0.1 0.00067 19.7 0.1 2.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase NT5C PF06941.12 gi|383319268|ref|YP_005380109.1| - 0.02 14.8 0.0 0.072 13.0 0.0 1.8 2 0 0 2 2 2 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) ILVD_EDD PF00920.21 gi|383319269|ref|YP_005380110.1| - 4.8e-214 711.8 2.0 5.4e-214 711.6 2.0 1.0 1 0 0 1 1 1 1 Dehydratase family Response_reg PF00072.24 gi|383319270|ref|YP_005380111.1| - 3e-23 82.1 0.1 3.4e-23 82.0 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain potato_inhibit PF00280.18 gi|383319270|ref|YP_005380111.1| - 0.058 14.1 0.2 0.18 12.5 0.1 1.8 2 0 0 2 2 2 0 Potato inhibitor I family DDE_Tnp_1 PF01609.21 gi|383319271|ref|YP_005380112.1| - 1.9e-24 86.5 0.0 2.6e-24 86.0 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain MarC PF01914.17 gi|383319272|ref|YP_005380113.1| - 8.4e-59 198.4 17.2 1e-58 198.1 17.2 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.16 gi|383319272|ref|YP_005380113.1| - 7.2e-07 29.1 11.1 6.2e-05 22.8 10.7 2.2 1 1 0 1 1 1 1 Integral membrane protein TerC family DUF1129 PF06570.11 gi|383319272|ref|YP_005380113.1| - 0.042 13.3 8.6 0.32 10.5 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) GtrA PF04138.14 gi|383319272|ref|YP_005380113.1| - 0.063 13.5 0.6 0.063 13.5 0.6 2.2 2 1 0 2 2 2 0 GtrA-like protein RseC_MucC PF04246.12 gi|383319272|ref|YP_005380113.1| - 0.12 12.4 6.4 1.1 9.2 0.1 2.3 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF2207 PF09972.9 gi|383319272|ref|YP_005380113.1| - 7.9 5.1 6.7 16 4.1 6.7 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2111 PF09884.9 gi|383319273|ref|YP_005380114.1| - 4.8e-31 106.7 0.6 6e-31 106.4 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) CarboxypepD_reg PF13620.6 gi|383319274|ref|YP_005380115.1| - 1.2e-08 35.1 5.4 2.2e-05 24.7 1.9 2.4 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain PGF-CTERM PF18204.1 gi|383319274|ref|YP_005380115.1| - 5.3e-06 26.2 2.1 1.1e-05 25.2 2.1 1.6 1 0 0 1 1 1 1 PGF-CTERM motif Lipase_C PF18067.1 gi|383319274|ref|YP_005380115.1| - 9.4e-05 22.9 0.3 0.22 12.1 0.1 2.2 2 0 0 2 2 2 2 Lipase C-terminal domain SpaA PF17802.1 gi|383319274|ref|YP_005380115.1| - 0.00018 21.8 1.1 0.016 15.5 0.5 3.0 1 1 1 2 2 2 1 Prealbumin-like fold domain YtkA PF13115.6 gi|383319274|ref|YP_005380115.1| - 0.0016 19.0 0.2 0.021 15.4 0.1 2.5 2 1 0 2 2 2 1 YtkA-like TTR-52 PF01060.23 gi|383319274|ref|YP_005380115.1| - 0.011 16.4 0.0 0.21 12.3 0.0 2.6 3 0 0 3 3 3 0 Transthyretin-like family HTH_20 PF12840.7 gi|383319275|ref|YP_005380116.1| - 4e-10 39.6 0.0 7e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|383319275|ref|YP_005380116.1| - 4.6e-07 29.3 0.0 6.8e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|383319275|ref|YP_005380116.1| - 4.7e-07 29.6 0.2 7.3e-07 29.0 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|383319275|ref|YP_005380116.1| - 2e-05 24.4 0.0 2.9e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|383319275|ref|YP_005380116.1| - 3.7e-05 23.5 0.0 6.6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|383319275|ref|YP_005380116.1| - 0.00032 20.8 0.0 0.0006 19.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|383319275|ref|YP_005380116.1| - 0.00041 20.1 0.0 0.00083 19.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|383319275|ref|YP_005380116.1| - 0.00068 20.1 0.1 0.0011 19.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF742 PF05331.11 gi|383319275|ref|YP_005380116.1| - 0.00069 19.4 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_47 PF16221.5 gi|383319275|ref|YP_005380116.1| - 0.0031 17.0 0.0 0.0052 16.3 0.0 1.4 1 0 0 1 1 1 1 winged helix-turn-helix TFIIE_alpha PF02002.17 gi|383319275|ref|YP_005380116.1| - 0.009 15.9 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit Rrf2 PF02082.20 gi|383319275|ref|YP_005380116.1| - 0.023 15.0 0.0 0.042 14.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator SPC12 PF06645.13 gi|383319275|ref|YP_005380116.1| - 0.07 13.2 0.8 1.8 8.7 0.1 2.4 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) HTH_AsnC-type PF13404.6 gi|383319275|ref|YP_005380116.1| - 0.13 12.1 0.0 0.46 10.4 0.0 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|383319275|ref|YP_005380116.1| - 0.14 12.0 0.0 0.39 10.6 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.12 gi|383319275|ref|YP_005380116.1| - 0.17 11.8 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain CarboxypepD_reg PF13620.6 gi|383319276|ref|YP_005380117.1| - 4.6e-06 26.8 7.7 5.1e-06 26.7 1.2 3.1 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain NPCBM_assoc PF10633.9 gi|383319276|ref|YP_005380117.1| - 8.4e-05 22.7 1.0 0.0047 17.2 0.1 3.2 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CarbopepD_reg_2 PF13715.6 gi|383319276|ref|YP_005380117.1| - 0.0048 16.9 0.6 0.014 15.4 0.2 2.0 2 0 0 2 2 2 1 CarboxypepD_reg-like domain Big_3_4 PF13754.6 gi|383319276|ref|YP_005380117.1| - 0.014 15.1 0.0 0.19 11.5 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function TIG PF01833.24 gi|383319276|ref|YP_005380117.1| - 0.66 10.1 4.5 8.4 6.5 0.0 3.5 4 0 0 4 4 4 0 IPT/TIG domain CBS PF00571.28 gi|383319277|ref|YP_005380118.1| - 1.5e-19 70.2 2.1 2.7e-12 46.9 0.0 2.8 3 0 0 3 3 3 2 CBS domain HTH_3 PF01381.22 gi|383319277|ref|YP_005380118.1| - 1e-11 44.7 0.8 3.8e-11 42.9 0.6 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|383319277|ref|YP_005380118.1| - 2.3e-09 37.5 0.1 5.1e-09 36.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|383319277|ref|YP_005380118.1| - 1.5e-05 24.9 0.3 4.4e-05 23.4 0.3 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|383319277|ref|YP_005380118.1| - 9e-05 22.3 0.3 0.00036 20.3 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|383319277|ref|YP_005380118.1| - 0.00053 19.9 0.4 0.0021 17.9 0.1 2.1 2 1 1 3 3 3 1 Helix-turn-helix domain Pou PF00157.17 gi|383319277|ref|YP_005380118.1| - 0.0028 17.6 0.0 0.0093 15.9 0.0 1.9 1 1 0 1 1 1 1 Pou domain - N-terminal to homeobox domain HTH_26 PF13443.6 gi|383319277|ref|YP_005380118.1| - 0.01 16.3 0.2 0.049 14.1 0.1 2.2 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain MqsA_antitoxin PF15731.5 gi|383319277|ref|YP_005380118.1| - 0.13 12.4 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_24 PF13412.6 gi|383319277|ref|YP_005380118.1| - 0.14 11.7 2.9 0.94 9.1 0.1 3.1 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding TetR_N PF00440.23 gi|383319277|ref|YP_005380118.1| - 0.16 11.8 0.0 3.9 7.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family CBFD_NFYB_HMF PF00808.23 gi|383319278|ref|YP_005380119.1| - 6.4e-15 55.2 0.1 7e-15 55.1 0.1 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|383319278|ref|YP_005380119.1| - 2.6e-10 40.8 0.1 3.1e-10 40.5 0.1 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|383319278|ref|YP_005380119.1| - 2.1e-08 34.3 0.0 2.1e-08 34.2 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold Bromo_TP PF07524.13 gi|383319278|ref|YP_005380119.1| - 1.7e-07 31.1 0.0 1.8e-07 31.1 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TFIID-31kDa PF02291.15 gi|383319278|ref|YP_005380119.1| - 8.8e-06 25.8 0.0 1e-05 25.6 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-S PF15630.6 gi|383319278|ref|YP_005380119.1| - 3.3e-05 24.2 0.0 3.8e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID_20kDa PF03847.13 gi|383319278|ref|YP_005380119.1| - 5.8e-05 23.5 0.0 6.7e-05 23.3 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A HTH_53 PF18606.1 gi|383319278|ref|YP_005380119.1| - 0.018 14.7 0.0 3.6 7.3 0.0 2.2 2 0 0 2 2 2 0 Zap helix turn helix N-terminal domain POR PF01558.18 gi|383319279|ref|YP_005380120.1| - 9.3e-42 143.1 0.2 1.1e-41 142.9 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|383319280|ref|YP_005380121.1| - 1.1e-15 56.7 20.5 2.5e-08 33.4 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383319280|ref|YP_005380121.1| - 6.6e-13 49.0 35.8 4.8e-07 30.3 16.5 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383319280|ref|YP_005380121.1| - 1.4e-12 47.5 14.3 1.7e-12 47.2 14.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383319280|ref|YP_005380121.1| - 1.2e-10 40.9 17.1 4.9e-06 26.4 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|383319280|ref|YP_005380121.1| - 2.1e-08 33.8 15.0 7.7e-05 22.6 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|383319280|ref|YP_005380121.1| - 5.1e-07 29.7 16.6 0.00063 19.8 7.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383319280|ref|YP_005380121.1| - 1.5e-06 28.3 14.2 2e-06 27.8 14.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383319280|ref|YP_005380121.1| - 2.2e-06 28.5 15.8 0.00064 20.6 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|383319280|ref|YP_005380121.1| - 0.00023 21.8 16.0 0.0061 17.3 2.2 3.0 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|383319280|ref|YP_005380121.1| - 0.00029 21.1 4.5 0.00029 21.1 4.5 2.9 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|383319280|ref|YP_005380121.1| - 0.00069 20.4 12.4 0.0059 17.4 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383319280|ref|YP_005380121.1| - 0.0052 17.3 15.5 0.017 15.6 3.9 2.9 2 1 1 3 3 3 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|383319280|ref|YP_005380121.1| - 0.0095 16.4 17.9 0.31 11.5 18.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383319280|ref|YP_005380121.1| - 0.011 16.3 16.8 0.039 14.5 3.4 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|383319280|ref|YP_005380121.1| - 0.13 13.3 3.8 0.13 13.3 3.8 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|383319280|ref|YP_005380121.1| - 3 8.0 9.9 2.6 8.2 2.7 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S POR_N PF01855.19 gi|383319281|ref|YP_005380122.1| - 1.7e-73 247.2 2.3 2.3e-73 246.7 2.3 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|383319281|ref|YP_005380122.1| - 8.8e-35 119.1 0.5 2.7e-34 117.5 0.1 2.0 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|383319281|ref|YP_005380122.1| - 7.4e-08 32.3 0.0 1.4e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|383319282|ref|YP_005380123.1| - 1.1e-27 96.8 0.0 1.6e-27 96.2 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IMP_cyclohyd PF07826.11 gi|383319283|ref|YP_005380124.1| - 7e-67 224.7 0.1 8e-67 224.6 0.1 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein HATPase_c PF02518.26 gi|383319284|ref|YP_005380125.1| - 7.9e-28 97.2 0.0 1.6e-27 96.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|383319284|ref|YP_005380125.1| - 3.6e-20 72.7 0.0 1.3e-13 51.4 0.0 2.4 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.6 gi|383319284|ref|YP_005380125.1| - 1.5e-19 70.7 0.1 8.5e-13 48.8 0.0 2.3 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|383319284|ref|YP_005380125.1| - 5.2e-19 69.2 0.0 4.4e-11 43.5 0.0 2.3 2 0 0 2 2 2 2 GAF domain HisKA PF00512.25 gi|383319284|ref|YP_005380125.1| - 2e-13 50.2 0.1 8e-13 48.2 0.0 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain DASH_Dad4 PF08650.10 gi|383319284|ref|YP_005380125.1| - 0.014 15.4 0.0 0.042 13.8 0.0 1.8 1 0 0 1 1 1 0 DASH complex subunit Dad4 DUF1495 PF07381.11 gi|383319285|ref|YP_005380126.1| - 1.2e-15 57.1 0.1 1.6e-15 56.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) ABC2_membrane_2 PF12679.7 gi|383319287|ref|YP_005380128.1| - 1.2e-21 77.3 24.7 1.8e-21 76.7 24.7 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383319288|ref|YP_005380129.1| - 3.5e-15 56.1 23.9 7e-15 55.1 23.9 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319288|ref|YP_005380129.1| - 4.1e-06 26.9 17.4 4.1e-06 26.9 17.4 2.2 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383319288|ref|YP_005380129.1| - 0.00035 20.2 28.2 0.00035 20.2 28.2 2.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319288|ref|YP_005380129.1| - 2.7 7.0 31.1 1.3 8.1 28.4 1.8 1 1 1 2 2 2 0 ABC-2 family transporter protein RCC1_2 PF13540.6 gi|383319289|ref|YP_005380130.1| - 1.7e-39 132.8 32.4 7.5e-07 28.8 0.1 7.9 7 1 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat RCC1 PF00415.18 gi|383319289|ref|YP_005380130.1| - 4.3e-39 132.9 31.0 2.5e-09 37.6 0.5 7.7 8 0 0 8 8 8 6 Regulator of chromosome condensation (RCC1) repeat DUF1459 PF07312.11 gi|383319289|ref|YP_005380130.1| - 0.34 11.1 0.1 0.34 11.1 0.1 5.8 6 0 0 6 6 6 0 Protein of unknown function (DUF1459) DUF1495 PF07381.11 gi|383319290|ref|YP_005380131.1| - 1.2e-15 57.1 0.1 1.6e-15 56.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) ABC2_membrane_2 PF12679.7 gi|383319292|ref|YP_005380133.1| - 6.7e-18 65.0 28.4 1.1e-17 64.2 28.4 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319292|ref|YP_005380133.1| - 0.00016 21.7 9.5 0.00016 21.7 9.5 3.1 1 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383319293|ref|YP_005380134.1| - 4.7e-18 65.5 22.7 9.1e-18 64.5 22.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319293|ref|YP_005380134.1| - 1.6e-05 24.2 28.1 1.6e-05 24.2 28.1 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|383319293|ref|YP_005380134.1| - 5.1e-05 22.8 24.1 5.1e-05 22.8 24.1 2.3 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|383319293|ref|YP_005380134.1| - 0.00012 22.1 13.5 0.00012 22.1 13.5 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein RCC1 PF00415.18 gi|383319294|ref|YP_005380135.1| - 6.2e-38 129.2 21.2 2.7e-10 40.7 0.0 8.5 8 1 0 8 8 8 6 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383319294|ref|YP_005380135.1| - 1.4e-26 91.7 28.9 6.3e-07 29.0 3.1 7.0 7 0 0 7 7 7 5 Regulator of chromosome condensation (RCC1) repeat TFIIB PF00382.19 gi|383319295|ref|YP_005380136.1| - 2.5e-43 146.0 1.9 4.2e-21 74.8 0.1 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|383319295|ref|YP_005380136.1| - 5.4e-18 64.2 1.8 9.6e-18 63.4 1.8 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|383319295|ref|YP_005380136.1| - 2.6e-05 23.6 0.4 0.029 13.9 0.1 3.4 2 1 0 2 2 2 2 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.11 gi|383319295|ref|YP_005380136.1| - 0.0022 17.9 0.5 0.0058 16.5 0.5 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_S27e PF01667.17 gi|383319295|ref|YP_005380136.1| - 0.0033 17.1 0.3 0.007 16.1 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 Lar_restr_allev PF14354.6 gi|383319295|ref|YP_005380136.1| - 0.016 15.6 0.5 0.048 14.1 0.2 2.0 2 0 0 2 2 2 0 Restriction alleviation protein Lar Cyclin_C PF02984.19 gi|383319295|ref|YP_005380136.1| - 0.018 15.1 0.0 3.7 7.7 0.0 2.3 2 0 0 2 2 2 0 Cyclin, C-terminal domain HTH_AsnC-type PF13404.6 gi|383319295|ref|YP_005380136.1| - 0.026 14.3 1.6 0.15 11.9 0.2 2.8 2 1 1 3 3 3 0 AsnC-type helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 gi|383319295|ref|YP_005380136.1| - 0.028 14.4 0.4 0.075 13.0 0.4 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|383319295|ref|YP_005380136.1| - 0.03 14.0 1.5 0.12 12.1 1.5 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|383319295|ref|YP_005380136.1| - 0.05 13.0 0.4 2.4 7.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_9 PF13901.6 gi|383319295|ref|YP_005380136.1| - 0.071 13.1 0.1 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon Zn-ribbon_8 PF09723.10 gi|383319295|ref|YP_005380136.1| - 0.2 11.8 3.6 1.3 9.2 0.5 2.6 1 1 2 3 3 3 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|383319295|ref|YP_005380136.1| - 0.26 11.3 2.1 1.1 9.3 1.5 2.4 1 1 1 2 2 2 0 Nudix N-terminal zf-RING_7 PF02591.15 gi|383319295|ref|YP_005380136.1| - 0.37 11.0 2.1 0.59 10.4 0.2 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain Gar1 PF04410.14 gi|383319296|ref|YP_005380137.1| - 3.2e-11 43.2 0.0 3.3e-11 43.2 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.16 gi|383319296|ref|YP_005380137.1| - 0.013 15.5 0.0 0.025 14.7 0.0 1.5 1 1 0 1 1 1 0 PRC-barrel domain BPL_C PF02237.17 gi|383319296|ref|YP_005380137.1| - 0.016 15.1 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain PHP PF02811.19 gi|383319297|ref|YP_005380138.1| - 9.5e-10 39.0 0.0 1.4e-09 38.4 0.0 1.3 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|383319297|ref|YP_005380138.1| - 7.6e-05 22.3 0.0 0.00019 21.0 0.0 1.8 1 1 0 1 1 1 1 RNase P subunit p30 SRP19 PF01922.17 gi|383319298|ref|YP_005380139.1| - 8.1e-18 65.2 0.0 9.9e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein DUF3194 PF11419.8 gi|383319299|ref|YP_005380140.1| - 6.1e-06 26.5 4.3 7.7e-06 26.2 4.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Prefoldin_2 PF01920.20 gi|383319300|ref|YP_005380141.1| - 1.5e-23 82.8 20.4 1.7e-23 82.6 20.4 1.0 1 0 0 1 1 1 1 Prefoldin subunit LRRFIP PF09738.9 gi|383319300|ref|YP_005380141.1| - 0.0019 17.7 11.3 0.0023 17.4 11.3 1.0 1 0 0 1 1 1 1 LRRFIP family YqjK PF13997.6 gi|383319300|ref|YP_005380141.1| - 0.03 14.6 1.8 0.03 14.6 1.8 1.6 1 1 0 1 1 1 0 YqjK-like protein DUF4795 PF16043.5 gi|383319300|ref|YP_005380141.1| - 0.035 13.7 10.7 0.046 13.3 10.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) BRE1 PF08647.11 gi|383319300|ref|YP_005380141.1| - 0.1 12.7 14.9 0.089 12.9 4.1 2.1 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase FlaC_arch PF05377.11 gi|383319300|ref|YP_005380141.1| - 0.11 13.0 0.4 0.11 13.0 0.4 2.8 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) SRP54 PF00448.22 gi|383319300|ref|YP_005380141.1| - 0.23 11.0 5.5 0.26 10.9 5.5 1.1 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF4763 PF15960.5 gi|383319300|ref|YP_005380141.1| - 0.3 10.3 13.9 1.3 8.2 7.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) Seryl_tRNA_N PF02403.22 gi|383319300|ref|YP_005380141.1| - 0.32 11.2 11.5 1.6 9.0 1.8 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CinA_KH PF18146.1 gi|383319300|ref|YP_005380141.1| - 0.51 10.5 5.4 0.27 11.4 0.6 2.3 1 1 1 2 2 2 0 Damage-inducible protein CinA KH domain ROF PF07073.12 gi|383319300|ref|YP_005380141.1| - 0.54 10.5 8.3 2.2 8.5 0.7 2.1 1 1 1 2 2 2 0 Modulator of Rho-dependent transcription termination (ROF) FlxA PF14282.6 gi|383319300|ref|YP_005380141.1| - 0.57 10.2 21.4 1.4 8.9 10.9 2.2 2 0 0 2 2 2 0 FlxA-like protein DUF3450 PF11932.8 gi|383319300|ref|YP_005380141.1| - 0.87 8.8 21.4 2 7.6 9.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Muted PF14942.6 gi|383319300|ref|YP_005380141.1| - 1.1 9.6 13.5 1.8 8.9 13.5 1.4 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein Exonuc_VII_L PF02601.15 gi|383319300|ref|YP_005380141.1| - 1.1 8.7 7.5 1.5 8.3 7.5 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit FUSC PF04632.12 gi|383319300|ref|YP_005380141.1| - 1.2 7.6 5.8 1.4 7.4 5.8 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Histidinol_dh PF00815.20 gi|383319300|ref|YP_005380141.1| - 1.7 7.6 7.0 0.27 10.2 1.1 1.9 1 1 0 1 1 1 0 Histidinol dehydrogenase DUF4407 PF14362.6 gi|383319300|ref|YP_005380141.1| - 2 7.7 10.7 2.7 7.3 10.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Laminin_II PF06009.12 gi|383319300|ref|YP_005380141.1| - 2.4 8.2 12.7 11 6.1 12.7 1.8 1 1 0 1 1 1 0 Laminin Domain II Prefoldin PF02996.17 gi|383319300|ref|YP_005380141.1| - 2.6 8.0 16.7 2.4 8.1 2.7 2.7 1 1 1 2 2 2 0 Prefoldin subunit Med4 PF10018.9 gi|383319300|ref|YP_005380141.1| - 3.2 7.4 13.6 1.3 8.7 2.7 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 HemX PF04375.14 gi|383319300|ref|YP_005380141.1| - 4.4 6.5 19.9 2.2e+02 0.9 20.2 2.0 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase SecD-TM1 PF13721.6 gi|383319300|ref|YP_005380141.1| - 4.5 7.8 9.7 0.39 11.2 1.2 2.1 1 1 1 2 2 2 0 SecD export protein N-terminal TM region V_ATPase_I PF01496.19 gi|383319300|ref|YP_005380141.1| - 6.5 4.5 10.4 14 3.4 10.4 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF724 PF05266.14 gi|383319300|ref|YP_005380141.1| - 7 6.4 12.1 8.9 6.1 12.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) YabA PF06156.13 gi|383319300|ref|YP_005380141.1| - 8.7 7.0 12.6 8 7.2 4.8 2.2 1 1 1 2 2 2 0 Initiation control protein YabA Spc24 PF08286.11 gi|383319300|ref|YP_005380141.1| - 9 6.6 14.2 7.4 6.9 2.1 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Pcc1 PF09341.10 gi|383319301|ref|YP_005380142.1| - 1.5e-10 41.1 0.0 1.6e-10 41.0 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.13 gi|383319302|ref|YP_005380143.1| - 1.8e-09 37.1 6.0 2.5e-09 36.6 6.0 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|383319302|ref|YP_005380143.1| - 2.9e-05 23.3 0.8 0.006 15.9 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|383319302|ref|YP_005380143.1| - 0.00036 20.5 3.8 0.049 13.6 0.2 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|383319302|ref|YP_005380143.1| - 0.00065 19.2 0.3 0.62 9.7 0.0 2.1 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger Cys_rich_CPXG PF14255.6 gi|383319302|ref|YP_005380143.1| - 0.00079 19.3 2.6 0.11 12.4 0.1 2.1 2 0 0 2 2 2 2 Cysteine-rich CPXCG HypA PF01155.19 gi|383319302|ref|YP_005380143.1| - 0.00088 19.3 0.5 0.00088 19.3 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF951 PF06107.11 gi|383319302|ref|YP_005380143.1| - 0.00092 19.1 0.7 0.23 11.4 0.1 2.0 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF951) Zn-ribbon_8 PF09723.10 gi|383319302|ref|YP_005380143.1| - 0.003 17.6 3.0 0.0048 17.0 3.0 1.4 1 1 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|383319302|ref|YP_005380143.1| - 0.004 16.6 1.1 0.0047 16.4 1.1 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|383319302|ref|YP_005380143.1| - 0.0044 17.4 1.3 0.43 11.0 0.1 2.0 1 1 1 2 2 2 1 Restriction alleviation protein Lar DZR PF12773.7 gi|383319302|ref|YP_005380143.1| - 0.0057 16.6 0.9 0.017 15.2 1.1 1.4 1 1 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|383319302|ref|YP_005380143.1| - 0.0085 16.0 2.1 0.014 15.3 2.1 1.5 1 1 0 1 1 1 1 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|383319302|ref|YP_005380143.1| - 0.011 15.6 1.0 0.012 15.4 1.0 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Desulfoferrod_N PF06397.12 gi|383319302|ref|YP_005380143.1| - 0.012 15.2 6.1 0.066 12.8 1.4 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Ogr_Delta PF04606.12 gi|383319302|ref|YP_005380143.1| - 0.019 14.9 2.0 0.24 11.4 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ACC PF17848.1 gi|383319302|ref|YP_005380143.1| - 0.023 14.8 1.1 4.3 7.5 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain YacG PF03884.14 gi|383319302|ref|YP_005380143.1| - 0.026 14.3 0.6 0.41 10.4 0.1 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG Elf1 PF05129.13 gi|383319302|ref|YP_005380143.1| - 0.026 14.6 0.4 0.03 14.4 0.4 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like NOB1_Zn_bind PF08772.11 gi|383319302|ref|YP_005380143.1| - 0.028 14.6 0.6 0.033 14.4 0.6 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-Sec23_Sec24 PF04810.15 gi|383319302|ref|YP_005380143.1| - 0.032 14.3 0.2 6.7 6.8 0.1 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Zn_Tnp_IS91 PF14319.6 gi|383319302|ref|YP_005380143.1| - 0.033 14.2 0.9 0.033 14.2 0.9 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF3797 PF12677.7 gi|383319302|ref|YP_005380143.1| - 0.042 13.7 0.5 0.042 13.7 0.5 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) TFIIS_C PF01096.18 gi|383319302|ref|YP_005380143.1| - 0.044 13.6 3.5 3.8 7.4 0.7 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.6 gi|383319302|ref|YP_005380143.1| - 0.046 13.7 5.3 2.3 8.2 5.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-LSD1 PF06943.12 gi|383319302|ref|YP_005380143.1| - 0.048 13.5 4.1 3.5 7.6 0.1 2.2 2 0 0 2 2 2 0 LSD1 zinc finger DUF1451 PF07295.11 gi|383319302|ref|YP_005380143.1| - 0.066 13.2 0.7 0.078 13.0 0.7 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-ISL3 PF14690.6 gi|383319302|ref|YP_005380143.1| - 0.1 13.3 0.9 0.1 13.3 0.9 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.6 gi|383319302|ref|YP_005380143.1| - 0.12 12.2 7.7 1.9 8.3 2.9 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|383319302|ref|YP_005380143.1| - 0.13 12.0 5.3 0.48 10.2 5.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.6 gi|383319302|ref|YP_005380143.1| - 0.15 12.2 2.0 0.64 10.1 0.1 2.0 1 1 1 2 2 2 0 CpXC protein DUF3268 PF11672.8 gi|383319302|ref|YP_005380143.1| - 0.2 12.0 3.1 0.74 10.2 0.1 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain zinc_ribbon_10 PF10058.9 gi|383319302|ref|YP_005380143.1| - 0.2 11.4 5.0 1.8 8.4 0.4 2.4 2 1 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-CHCC PF10276.9 gi|383319302|ref|YP_005380143.1| - 0.21 11.7 5.4 0.35 11.0 5.4 1.5 1 1 0 1 1 1 0 Zinc-finger domain A2L_zn_ribbon PF08792.10 gi|383319302|ref|YP_005380143.1| - 0.23 11.2 2.6 1.6 8.5 3.2 1.8 1 1 1 2 2 2 0 A2L zinc ribbon domain UPF0547 PF10571.9 gi|383319302|ref|YP_005380143.1| - 0.35 11.0 7.3 0.85 9.8 1.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PyrI_C PF02748.15 gi|383319302|ref|YP_005380143.1| - 0.36 10.8 5.3 0.51 10.3 0.2 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Ribosomal_L37ae PF01780.19 gi|383319303|ref|YP_005380144.1| - 1e-30 105.6 5.5 1.2e-30 105.5 5.5 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|383319303|ref|YP_005380144.1| - 0.00011 22.1 2.6 0.00017 21.5 2.6 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|383319303|ref|YP_005380144.1| - 0.0057 17.0 1.2 3.5 8.2 0.2 2.2 2 0 0 2 2 2 2 Zinc-finger double domain C1_1 PF00130.22 gi|383319303|ref|YP_005380144.1| - 0.0075 16.1 1.8 0.012 15.5 1.8 1.3 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) IBR PF01485.21 gi|383319303|ref|YP_005380144.1| - 0.0084 16.3 0.5 0.012 15.8 0.5 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain RNA_POL_M_15KD PF02150.16 gi|383319303|ref|YP_005380144.1| - 0.012 15.5 0.3 0.026 14.4 0.3 1.5 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Elf1 PF05129.13 gi|383319303|ref|YP_005380144.1| - 0.014 15.4 1.0 0.035 14.1 1.0 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.12 gi|383319303|ref|YP_005380144.1| - 0.024 14.1 0.2 0.042 13.4 0.2 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|383319303|ref|YP_005380144.1| - 0.026 14.5 0.5 0.046 13.6 0.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.18 gi|383319303|ref|YP_005380144.1| - 0.043 13.7 2.9 1.8 8.5 0.1 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf_C2H2_10 PF18414.1 gi|383319303|ref|YP_005380144.1| - 0.16 11.6 4.6 2.5 7.7 0.6 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger Sgf11 PF08209.11 gi|383319303|ref|YP_005380144.1| - 0.49 10.0 3.1 0.56 9.8 0.2 2.3 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_4 PF13717.6 gi|383319303|ref|YP_005380144.1| - 0.92 9.5 5.9 4.9 7.1 0.6 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|383319303|ref|YP_005380144.1| - 0.92 10.1 4.4 5.8 7.6 0.4 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2HC_2 PF13913.6 gi|383319303|ref|YP_005380144.1| - 1.2 9.1 5.3 0.57 10.1 0.8 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Prim_Zn_Ribbon PF08273.12 gi|383319303|ref|YP_005380144.1| - 1.5 9.2 7.7 4.4 7.7 7.7 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Mut7-C PF01927.16 gi|383319303|ref|YP_005380144.1| - 1.7 8.7 4.4 9.2 6.4 0.3 2.1 1 1 1 2 2 2 0 Mut7-C RNAse domain RNase_PH PF01138.21 gi|383319304|ref|YP_005380145.1| - 1.4e-29 103.2 0.0 2e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|383319304|ref|YP_005380145.1| - 8.3e-10 38.6 0.2 1.8e-09 37.5 0.2 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|383319305|ref|YP_005380146.1| - 1.5e-34 119.3 0.0 3.3e-34 118.2 0.0 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|383319305|ref|YP_005380146.1| - 2.8e-17 62.5 0.3 5e-17 61.7 0.3 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|383319306|ref|YP_005380147.1| - 1.2e-08 35.2 0.4 2.5e-08 34.1 0.4 1.6 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.6 gi|383319306|ref|YP_005380147.1| - 2.2e-08 33.7 0.2 3.9e-08 33.0 0.2 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_1 PF00013.29 gi|383319306|ref|YP_005380147.1| - 5.2e-06 26.2 0.6 1.1e-05 25.1 0.6 1.6 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|383319306|ref|YP_005380147.1| - 0.00044 20.5 0.0 0.0011 19.3 0.0 1.7 1 0 0 1 1 1 1 S1 RNA binding domain KH_2 PF07650.17 gi|383319306|ref|YP_005380147.1| - 0.00055 19.7 0.4 0.00055 19.7 0.4 2.0 2 0 0 2 2 2 1 KH domain Thioredoxin_9 PF14595.6 gi|383319306|ref|YP_005380147.1| - 0.017 14.9 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin SBDS PF01172.18 gi|383319307|ref|YP_005380148.1| - 1.9e-24 85.5 0.0 3e-24 84.9 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|383319307|ref|YP_005380148.1| - 5.3e-21 74.8 0.0 7.9e-21 74.2 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.26 gi|383319308|ref|YP_005380149.1| - 1.3e-59 200.9 0.2 1.7e-59 200.5 0.2 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|383319308|ref|YP_005380149.1| - 5.4e-13 48.3 0.2 1.2e-12 47.2 0.2 1.6 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|383319309|ref|YP_005380150.1| - 7.8e-16 58.2 0.0 1.2e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family DUF460 PF04312.13 gi|383319311|ref|YP_005380152.1| - 3.4e-53 179.1 2.2 1.2e-51 174.1 1.2 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|383319311|ref|YP_005380152.1| - 0.00014 22.1 0.1 0.00014 22.1 0.1 2.8 4 0 0 4 4 2 1 Actinobacteria/chloroflexi VLRF1 release factor Spc7 PF08317.11 gi|383319311|ref|YP_005380152.1| - 0.00036 19.5 3.9 0.00083 18.3 3.9 1.6 1 0 0 1 1 1 1 Spc7 kinetochore protein GOLGA2L5 PF15070.6 gi|383319311|ref|YP_005380152.1| - 0.0017 17.2 0.3 0.0027 16.4 0.3 1.2 1 0 0 1 1 1 1 Putative golgin subfamily A member 2-like protein 5 DUF5082 PF16888.5 gi|383319311|ref|YP_005380152.1| - 0.0026 18.0 1.9 2 8.7 0.1 2.8 2 0 0 2 2 2 2 Domain of unknown function (DUF5082) DUF812 PF05667.11 gi|383319311|ref|YP_005380152.1| - 0.013 14.4 1.8 0.02 13.8 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DivIC PF04977.15 gi|383319311|ref|YP_005380152.1| - 0.015 15.0 0.3 0.015 15.0 0.3 3.9 3 1 0 4 4 3 0 Septum formation initiator HOOK PF05622.12 gi|383319311|ref|YP_005380152.1| - 0.019 13.1 4.9 0.035 12.3 4.9 1.3 1 0 0 1 1 1 0 HOOK protein BLOC1_2 PF10046.9 gi|383319311|ref|YP_005380152.1| - 0.028 14.7 2.9 7.8 6.9 0.1 2.9 3 0 0 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cnn_1N PF07989.11 gi|383319311|ref|YP_005380152.1| - 0.045 13.9 5.1 2.9 8.1 0.0 2.8 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 KASH_CCD PF14662.6 gi|383319311|ref|YP_005380152.1| - 0.058 13.2 9.0 1.4 8.7 9.0 2.4 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Cast PF10174.9 gi|383319311|ref|YP_005380152.1| - 0.081 11.1 9.7 0.14 10.3 9.7 1.3 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone TMF_DNA_bd PF12329.8 gi|383319311|ref|YP_005380152.1| - 0.098 12.7 8.9 1.5 8.9 4.1 2.9 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Fez1 PF06818.15 gi|383319311|ref|YP_005380152.1| - 0.13 12.7 10.7 0.38 11.2 10.6 1.9 1 1 0 1 1 1 0 Fez1 Fib_alpha PF08702.10 gi|383319311|ref|YP_005380152.1| - 0.14 12.3 4.2 0.085 13.0 1.9 1.9 2 0 0 2 2 1 0 Fibrinogen alpha/beta chain family FAM76 PF16046.5 gi|383319311|ref|YP_005380152.1| - 0.15 11.4 2.7 0.26 10.6 2.7 1.4 1 0 0 1 1 1 0 FAM76 protein APC_N_CC PF16689.5 gi|383319311|ref|YP_005380152.1| - 0.21 11.7 1.9 4.3 7.5 0.7 2.4 2 0 0 2 2 2 0 Coiled-coil N-terminus of APC, dimerisation domain DUF16 PF01519.16 gi|383319311|ref|YP_005380152.1| - 0.22 12.0 1.7 1.1 9.7 1.7 2.2 1 1 0 1 1 1 0 Protein of unknown function DUF16 ZapB PF06005.12 gi|383319311|ref|YP_005380152.1| - 0.25 11.8 0.0 0.25 11.8 0.0 3.3 4 0 0 4 4 2 0 Cell division protein ZapB CorA PF01544.18 gi|383319311|ref|YP_005380152.1| - 0.3 10.4 7.9 0.58 9.4 7.9 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein TACC_C PF05010.14 gi|383319311|ref|YP_005380152.1| - 0.38 10.5 8.6 0.065 13.0 3.8 2.1 2 1 0 2 2 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal ATG16 PF08614.11 gi|383319311|ref|YP_005380152.1| - 0.43 10.8 18.0 0.31 11.2 6.3 2.9 2 1 1 3 3 2 0 Autophagy protein 16 (ATG16) SlyX PF04102.12 gi|383319311|ref|YP_005380152.1| - 0.49 11.1 7.0 6.2 7.5 1.5 3.4 1 1 1 2 2 2 0 SlyX DUF1664 PF07889.12 gi|383319311|ref|YP_005380152.1| - 0.53 10.3 3.5 1.5 8.8 0.4 2.9 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) UPF0242 PF06785.11 gi|383319311|ref|YP_005380152.1| - 0.53 10.4 10.6 0.061 13.4 1.4 2.7 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus CENP-F_N PF10481.9 gi|383319311|ref|YP_005380152.1| - 0.57 9.8 6.0 0.59 9.7 3.7 2.2 2 0 0 2 2 2 0 Cenp-F N-terminal domain HAUS-augmin3 PF14932.6 gi|383319311|ref|YP_005380152.1| - 0.85 9.1 3.8 3.1 7.3 3.8 1.9 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 Sipho_Gp157 PF05565.11 gi|383319311|ref|YP_005380152.1| - 1.1 9.2 9.6 2.1 8.3 3.5 2.5 1 1 1 2 2 2 0 Siphovirus Gp157 GAS PF13851.6 gi|383319311|ref|YP_005380152.1| - 1.1 8.6 7.6 4.5 6.6 7.6 2.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding ADIP PF11559.8 gi|383319311|ref|YP_005380152.1| - 1.3 9.1 13.4 0.21 11.7 6.5 2.8 2 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding DUF641 PF04859.12 gi|383319311|ref|YP_005380152.1| - 1.5 9.1 6.3 11 6.3 2.4 2.7 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) bZIP_1 PF00170.21 gi|383319311|ref|YP_005380152.1| - 1.7 8.8 17.2 0.15 12.1 0.3 3.2 3 0 0 3 3 2 0 bZIP transcription factor Csm1_N PF18504.1 gi|383319311|ref|YP_005380152.1| - 1.8 8.9 13.3 2.1 8.7 0.4 3.0 3 0 0 3 3 2 0 Csm1 N-terminal domain DUF4349 PF14257.6 gi|383319311|ref|YP_005380152.1| - 1.9 7.9 9.1 5.1 6.5 9.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Exonuc_VII_L PF02601.15 gi|383319311|ref|YP_005380152.1| - 2.2 7.7 7.0 2.3 7.7 5.5 1.8 1 1 1 2 2 2 0 Exonuclease VII, large subunit FlaC_arch PF05377.11 gi|383319311|ref|YP_005380152.1| - 2.3 8.7 9.8 2.6 8.5 0.1 3.9 5 0 0 5 5 2 0 Flagella accessory protein C (FlaC) YabA PF06156.13 gi|383319311|ref|YP_005380152.1| - 2.4 8.9 5.5 44 4.8 0.1 2.7 1 1 1 2 2 2 0 Initiation control protein YabA APG6_N PF17675.1 gi|383319311|ref|YP_005380152.1| - 3.2 8.3 9.8 23 5.5 7.7 2.8 1 1 1 2 2 2 0 Apg6 coiled-coil region PKcGMP_CC PF16808.5 gi|383319311|ref|YP_005380152.1| - 5.7 6.9 21.0 1.7 8.6 1.2 4.4 4 0 0 4 4 4 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Pox_A_type_inc PF04508.12 gi|383319311|ref|YP_005380152.1| - 6.1 6.9 13.3 11 6.0 0.0 4.7 5 0 0 5 5 3 0 Viral A-type inclusion protein repeat HD PF01966.22 gi|383319312|ref|YP_005380153.1| - 2e-14 53.8 0.8 5.3e-14 52.5 0.8 1.8 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|383319312|ref|YP_005380153.1| - 0.00095 18.7 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 HDOD domain PDEase_I PF00233.19 gi|383319312|ref|YP_005380153.1| - 0.024 14.4 0.1 0.064 13.0 0.1 1.8 2 0 0 2 2 2 0 3'5'-cyclic nucleotide phosphodiesterase Pox_G5 PF04599.12 gi|383319313|ref|YP_005380154.1| - 0.00077 18.6 0.2 0.00092 18.3 0.2 1.1 1 0 0 1 1 1 1 Poxvirus G5 protein RTP PF02334.16 gi|383319313|ref|YP_005380154.1| - 0.0031 18.1 0.5 0.011 16.4 0.2 1.8 2 0 0 2 2 2 1 Replication terminator protein Ribosomal_L32e PF01655.18 gi|383319313|ref|YP_005380154.1| - 0.043 14.2 0.0 0.064 13.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L32 TBPIP PF07106.13 gi|383319313|ref|YP_005380154.1| - 0.075 13.0 0.1 0.45 10.5 0.0 2.3 3 0 0 3 3 3 0 TBPIP/Hop2 winged helix domain DUF1638 PF07796.11 gi|383319313|ref|YP_005380154.1| - 0.1 12.7 0.1 0.33 11.0 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1638) HARE-HTH PF05066.13 gi|383319313|ref|YP_005380154.1| - 0.17 12.3 0.4 0.4 11.1 0.1 1.8 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain AIRC PF00731.20 gi|383319314|ref|YP_005380155.1| - 1.3e-16 60.5 5.4 1.3e-16 60.5 5.4 1.4 2 0 0 2 2 2 1 AIR carboxylase NAD_kinase PF01513.21 gi|383319314|ref|YP_005380155.1| - 0.035 13.3 1.8 1.4 8.0 0.7 2.4 1 1 0 2 2 2 0 ATP-NAD kinase polyprenyl_synt PF00348.17 gi|383319315|ref|YP_005380156.1| - 3.9e-67 226.0 0.0 4.7e-67 225.7 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase ThiS PF02597.20 gi|383319316|ref|YP_005380157.1| - 6.4e-17 62.0 0.0 7.2e-17 61.8 0.0 1.0 1 0 0 1 1 1 1 ThiS family S4 PF01479.25 gi|383319316|ref|YP_005380157.1| - 0.00021 21.0 0.1 0.00045 19.9 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ub-Mut7C PF14451.6 gi|383319316|ref|YP_005380157.1| - 0.0013 18.5 0.2 0.0073 16.1 0.0 2.1 2 1 0 2 2 2 1 Mut7-C ubiquitin Lambda_tail_I PF06805.12 gi|383319316|ref|YP_005380157.1| - 0.031 14.6 0.0 0.038 14.3 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I TGS PF02824.21 gi|383319316|ref|YP_005380157.1| - 0.13 12.4 0.0 0.77 9.9 0.0 1.9 2 0 0 2 2 2 0 TGS domain DUF2124 PF09897.9 gi|383319317|ref|YP_005380158.1| - 1.6e-48 164.1 0.0 1.9e-48 164.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) DJ-1_PfpI PF01965.24 gi|383319317|ref|YP_005380158.1| - 0.012 15.4 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family NRD1_2 PF01995.16 gi|383319318|ref|YP_005380159.1| - 2.1e-88 295.6 0.1 3.1e-88 295.1 0.1 1.2 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|383319318|ref|YP_005380159.1| - 2.6e-25 88.1 2.1 6.5e-25 86.9 2.1 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_21 PF13276.6 gi|383319318|ref|YP_005380159.1| - 0.00032 20.8 0.4 0.00086 19.4 0.4 1.7 1 0 0 1 1 1 1 HTH-like domain DUF1495 PF07381.11 gi|383319319|ref|YP_005380160.1| - 4e-18 65.0 0.2 4.8e-18 64.8 0.2 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) ABC2_membrane_2 PF12679.7 gi|383319321|ref|YP_005380162.1| - 2.3e-20 73.1 27.6 7.6e-20 71.3 27.6 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319321|ref|YP_005380162.1| - 2.5 8.0 33.5 0.12 12.4 21.8 2.8 2 1 1 3 3 3 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383319322|ref|YP_005380163.1| - 9.9e-20 71.0 26.6 3e-19 69.4 26.6 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319322|ref|YP_005380163.1| - 9.3e-12 45.3 15.4 9.3e-12 45.3 15.4 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383319322|ref|YP_005380163.1| - 0.012 15.2 33.7 0.0071 15.9 26.6 2.8 1 1 0 2 2 2 0 ABC-2 family transporter protein DUF4516 PF14990.6 gi|383319322|ref|YP_005380163.1| - 0.093 12.5 1.0 0.43 10.3 1.0 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4516) ABC2_membrane_3 PF12698.7 gi|383319322|ref|YP_005380163.1| - 0.15 11.2 36.2 0.0049 16.0 27.0 2.0 1 1 0 2 2 2 0 ABC-2 family transporter protein RCC1 PF00415.18 gi|383319323|ref|YP_005380164.1| - 1.6e-68 227.1 20.8 5e-11 43.1 0.1 8.3 8 0 0 8 8 8 7 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383319323|ref|YP_005380164.1| - 6.3e-59 194.8 33.3 3.5e-11 42.6 0.2 7.9 7 1 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat Gemini_mov PF01708.16 gi|383319323|ref|YP_005380164.1| - 0.025 14.4 0.2 0.044 13.5 0.2 1.4 1 0 0 1 1 1 0 Geminivirus putative movement protein DUF1459 PF07312.11 gi|383319323|ref|YP_005380164.1| - 1.1 9.5 22.4 4.8 7.5 0.1 6.9 7 0 0 7 7 7 0 Protein of unknown function (DUF1459) RCC1 PF00415.18 gi|383319324|ref|YP_005380165.1| - 1.4e-60 201.7 22.8 1.4e-11 44.8 0.2 7.2 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383319324|ref|YP_005380165.1| - 2.4e-51 170.6 26.2 1.5e-10 40.5 0.7 7.4 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat Reg_prop PF07494.11 gi|383319324|ref|YP_005380165.1| - 0.0034 17.4 1.4 28 5.4 0.2 5.5 6 0 0 6 6 6 1 Two component regulator propeller CIDE-N PF02017.15 gi|383319324|ref|YP_005380165.1| - 0.13 12.3 1.7 79 3.4 0.0 4.4 6 0 0 6 6 6 0 CIDE-N domain TerB PF05099.13 gi|383319325|ref|YP_005380166.1| - 3.9e-07 30.1 1.0 5.8e-07 29.6 1.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TerB DUF533 PF04391.12 gi|383319325|ref|YP_005380166.1| - 0.00014 21.5 1.9 0.00032 20.3 1.9 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF533) CTP_synth_N PF06418.14 gi|383319326|ref|YP_005380167.1| - 1e-129 431.5 2.2 1.4e-129 431.1 2.2 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|383319326|ref|YP_005380167.1| - 1e-56 191.7 0.0 2.2e-56 190.7 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|383319326|ref|YP_005380167.1| - 6.2e-09 35.9 0.0 4.6e-08 33.1 0.0 2.3 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|383319326|ref|YP_005380167.1| - 0.00012 22.1 0.0 0.0003 20.8 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.17 gi|383319327|ref|YP_005380168.1| - 6.6e-47 159.6 0.0 7.4e-47 159.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|383319327|ref|YP_005380168.1| - 1e-08 35.6 0.0 1.3e-08 35.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|383319327|ref|YP_005380168.1| - 0.00027 21.5 0.0 0.00046 20.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|383319327|ref|YP_005380168.1| - 0.0023 18.4 0.1 0.0048 17.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|383319327|ref|YP_005380168.1| - 0.0043 16.9 0.0 0.27 11.1 0.0 2.6 1 1 0 1 1 1 1 Deoxynucleoside kinase PPK2 PF03976.14 gi|383319327|ref|YP_005380168.1| - 0.0044 16.6 0.0 0.0083 15.7 0.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) AAA_22 PF13401.6 gi|383319327|ref|YP_005380168.1| - 0.0048 17.2 0.0 0.011 16.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|383319327|ref|YP_005380168.1| - 0.005 17.0 0.0 0.016 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|383319327|ref|YP_005380168.1| - 0.036 13.8 0.1 0.054 13.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|383319327|ref|YP_005380168.1| - 0.037 14.0 0.8 6 6.7 0.1 2.4 2 1 0 2 2 2 0 NTPase DUF1700 PF08006.11 gi|383319328|ref|YP_005380169.1| - 0.2 11.2 1.6 0.32 10.5 1.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) MarR PF01047.22 gi|383319331|ref|YP_005380172.1| - 4.2e-06 26.6 0.0 6.9e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|383319331|ref|YP_005380172.1| - 6.2e-06 26.0 0.1 1e-05 25.3 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|383319331|ref|YP_005380172.1| - 1.5e-05 24.8 0.0 2.8e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|383319331|ref|YP_005380172.1| - 5.6e-05 22.6 0.0 0.00026 20.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|383319331|ref|YP_005380172.1| - 0.00053 19.9 0.0 0.00095 19.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|383319331|ref|YP_005380172.1| - 0.0019 18.6 0.0 0.0039 17.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Phage_rep_O PF04492.13 gi|383319331|ref|YP_005380172.1| - 0.0023 18.5 0.0 0.065 13.8 0.0 2.2 1 1 1 2 2 2 1 Bacteriophage replication protein O DprA_WH PF17782.1 gi|383319331|ref|YP_005380172.1| - 0.0077 16.3 0.0 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 DprA winged helix domain GntR PF00392.21 gi|383319331|ref|YP_005380172.1| - 0.016 14.9 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family SMC_ScpB PF04079.16 gi|383319331|ref|YP_005380172.1| - 0.017 14.8 0.1 0.04 13.5 0.0 1.6 1 1 0 1 1 1 0 Segregation and condensation complex subunit ScpB HTH_36 PF13730.6 gi|383319331|ref|YP_005380172.1| - 0.027 14.4 0.0 0.061 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|383319331|ref|YP_005380172.1| - 0.032 14.1 0.0 0.063 13.1 0.0 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit DUF4393 PF14337.6 gi|383319331|ref|YP_005380172.1| - 0.037 13.8 0.0 0.079 12.8 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4393) HTH_IclR PF09339.10 gi|383319331|ref|YP_005380172.1| - 0.046 13.5 0.0 0.081 12.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Dimerisation2 PF16864.5 gi|383319331|ref|YP_005380172.1| - 0.054 13.5 0.0 0.093 12.7 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain Fer4 PF00037.27 gi|383319332|ref|YP_005380173.1| - 1.2e-13 50.3 14.3 1.3e-07 31.1 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383319332|ref|YP_005380173.1| - 1.8e-13 50.8 34.2 1.8e-07 31.6 13.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383319332|ref|YP_005380173.1| - 8.8e-11 42.6 7.1 3.5e-05 24.7 0.5 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|383319332|ref|YP_005380173.1| - 5.2e-10 39.3 34.0 5.1e-06 26.6 12.8 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383319332|ref|YP_005380173.1| - 7.1e-10 38.4 13.0 8e-05 22.5 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383319332|ref|YP_005380173.1| - 3.5e-09 36.4 14.0 0.00012 21.9 4.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|383319332|ref|YP_005380173.1| - 8.6e-08 32.2 12.3 0.00051 20.1 2.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383319332|ref|YP_005380173.1| - 3.3e-06 27.1 11.8 1.1e-05 25.5 11.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383319332|ref|YP_005380173.1| - 2.6e-05 24.4 13.1 0.013 16.0 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|383319332|ref|YP_005380173.1| - 6.7e-05 23.6 20.1 0.016 16.1 6.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|383319332|ref|YP_005380173.1| - 0.00014 22.2 14.5 0.016 15.7 2.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383319332|ref|YP_005380173.1| - 0.00031 21.2 13.9 0.016 15.7 3.2 2.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383319332|ref|YP_005380173.1| - 0.00043 20.8 10.6 0.11 13.0 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|383319332|ref|YP_005380173.1| - 0.0024 18.5 7.1 0.043 14.6 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|383319332|ref|YP_005380173.1| - 0.013 16.3 9.6 0.22 12.4 1.3 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|383319332|ref|YP_005380173.1| - 0.013 15.7 12.0 0.17 12.1 2.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Mut7-C PF01927.16 gi|383319332|ref|YP_005380173.1| - 0.42 10.7 4.0 0.45 10.6 4.0 1.1 1 0 0 1 1 1 0 Mut7-C RNAse domain FAD_binding_3 PF01494.19 gi|383319333|ref|YP_005380174.1| - 1.1e-20 74.2 0.7 1.2e-11 44.5 0.0 2.4 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|383319333|ref|YP_005380174.1| - 2.5e-13 49.9 1.4 3.4e-08 33.0 0.1 2.4 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|383319333|ref|YP_005380174.1| - 3.4e-10 40.1 4.9 4e-05 23.3 0.6 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|383319333|ref|YP_005380174.1| - 5.5e-10 39.2 7.1 8.5e-10 38.5 6.0 1.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|383319333|ref|YP_005380174.1| - 7.9e-10 38.0 0.1 1.6e-09 37.0 0.0 1.6 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|383319333|ref|YP_005380174.1| - 3.5e-08 33.6 0.5 2e-07 31.1 0.1 2.5 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|383319333|ref|YP_005380174.1| - 3.1e-07 29.8 0.4 5e-05 22.5 0.2 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|383319333|ref|YP_005380174.1| - 4.3e-07 29.4 2.6 1.9e-06 27.3 2.6 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|383319333|ref|YP_005380174.1| - 1.7e-06 27.4 3.9 6e-06 25.6 3.9 1.8 1 1 0 1 1 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|383319333|ref|YP_005380174.1| - 2.1e-06 26.9 0.3 0.025 13.5 0.1 2.8 2 1 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.17 gi|383319333|ref|YP_005380174.1| - 0.00012 21.4 0.1 0.00012 21.4 0.1 2.0 3 0 0 3 3 3 1 Thi4 family Pyr_redox_3 PF13738.6 gi|383319333|ref|YP_005380174.1| - 0.0015 17.9 0.2 0.0034 16.7 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|383319333|ref|YP_005380174.1| - 0.0074 15.6 1.7 0.015 14.6 0.1 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|383319333|ref|YP_005380174.1| - 0.021 15.4 1.8 0.088 13.4 0.1 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 gi|383319333|ref|YP_005380174.1| - 0.041 14.4 0.0 0.26 11.8 0.0 2.2 3 0 0 3 3 2 0 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|383319333|ref|YP_005380174.1| - 0.081 12.8 2.0 0.11 12.4 0.1 2.2 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SE PF08491.10 gi|383319333|ref|YP_005380174.1| - 0.1 11.7 0.1 0.17 10.9 0.1 1.5 1 0 0 1 1 1 0 Squalene epoxidase TrkA_N PF02254.18 gi|383319333|ref|YP_005380174.1| - 0.11 12.8 0.2 0.97 9.7 0.1 2.3 2 0 0 2 2 2 0 TrkA-N domain GAF_3 PF13492.6 gi|383319335|ref|YP_005380176.1| - 0.15 12.4 0.0 1.6 9.1 0.0 2.1 2 0 0 2 2 2 0 GAF domain Zn_Tnp_IS1595 PF12760.7 gi|383319336|ref|YP_005380177.1| - 2.2e-05 24.3 0.4 0.057 13.4 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain HypA PF01155.19 gi|383319336|ref|YP_005380177.1| - 2.7e-05 24.2 0.8 2.7e-05 24.2 0.8 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|383319336|ref|YP_005380177.1| - 5e-05 23.3 4.4 0.0001 22.4 4.4 1.5 1 1 0 1 1 1 1 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|383319336|ref|YP_005380177.1| - 0.0018 18.2 0.6 0.0018 18.2 0.6 1.1 1 0 0 1 1 1 1 zinc-ribbons zf-IS66 PF13005.7 gi|383319336|ref|YP_005380177.1| - 0.0028 18.0 0.3 2.4 8.6 0.0 2.1 2 0 0 2 2 2 2 zinc-finger binding domain of transposase IS66 DZR PF12773.7 gi|383319336|ref|YP_005380177.1| - 0.0055 16.7 1.2 0.0058 16.6 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|383319336|ref|YP_005380177.1| - 0.0061 16.4 1.7 0.12 12.3 0.2 2.2 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Prok-RING_1 PF14446.6 gi|383319336|ref|YP_005380177.1| - 0.01 15.8 2.6 0.014 15.3 2.6 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TFIIS_C PF01096.18 gi|383319336|ref|YP_005380177.1| - 0.01 15.7 2.5 1.2 9.1 0.7 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS91 PF14319.6 gi|383319336|ref|YP_005380177.1| - 0.017 15.2 0.4 0.021 14.8 0.4 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_9 PF14369.6 gi|383319336|ref|YP_005380177.1| - 0.021 15.1 0.6 0.92 9.8 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon zf-RRN7 PF11781.8 gi|383319336|ref|YP_005380177.1| - 0.028 14.1 0.4 0.096 12.4 0.1 1.9 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|383319336|ref|YP_005380177.1| - 0.042 13.4 4.3 0.98 9.0 0.3 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding NRDD PF13597.6 gi|383319336|ref|YP_005380177.1| - 0.055 12.3 0.3 0.055 12.3 0.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn_Tnp_IS1 PF03811.13 gi|383319336|ref|YP_005380177.1| - 0.06 13.1 6.1 2.3 8.0 0.3 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-trcl PF13451.6 gi|383319336|ref|YP_005380177.1| - 0.092 12.7 3.3 2.3 8.2 0.8 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|383319336|ref|YP_005380177.1| - 0.095 12.5 6.4 0.11 12.2 1.0 2.3 1 1 1 2 2 2 0 zinc-ribbon domain FYDLN_acid PF09538.10 gi|383319336|ref|YP_005380177.1| - 0.13 13.0 1.8 0.16 12.7 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-ISL3 PF14690.6 gi|383319336|ref|YP_005380177.1| - 0.16 12.7 6.1 5.3 7.8 0.2 2.4 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rubredoxin_2 PF18073.1 gi|383319336|ref|YP_005380177.1| - 1.2 9.0 4.9 11 5.8 0.7 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-H2C2_2 PF13465.6 gi|383319336|ref|YP_005380177.1| - 1.2 9.7 10.4 0.51 10.9 3.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Fumerase_C PF05683.12 gi|383319337|ref|YP_005380178.1| - 1.3e-42 145.5 0.4 1.5e-42 145.3 0.4 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.14 gi|383319338|ref|YP_005380179.1| - 4e-96 321.6 0.0 4.6e-96 321.4 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) AI-2E_transport PF01594.16 gi|383319339|ref|YP_005380180.1| - 1.8e-45 155.5 31.5 6.2e-45 153.8 31.5 1.7 1 1 0 1 1 1 1 AI-2E family transporter UPF0004 PF00919.20 gi|383319340|ref|YP_005380181.1| - 4.5e-20 71.5 0.4 7.8e-20 70.8 0.4 1.3 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 gi|383319340|ref|YP_005380181.1| - 1.2e-19 71.3 0.0 2.3e-19 70.4 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.20 gi|383319340|ref|YP_005380181.1| - 2.6e-06 27.3 0.0 8.2e-06 25.7 0.0 1.8 2 0 0 2 2 2 1 TRAM domain MCR_beta PF02241.18 gi|383319342|ref|YP_005380183.1| - 9.4e-134 444.7 2.4 1.3e-133 444.2 2.4 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|383319342|ref|YP_005380183.1| - 1.5e-82 275.6 1.7 1.5e-82 275.6 1.7 2.1 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.14 gi|383319343|ref|YP_005380184.1| - 6.2e-48 162.3 0.1 7.3e-48 162.0 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_C PF04609.12 gi|383319344|ref|YP_005380185.1| - 1.6e-07 30.7 1.7 4.1e-07 29.3 1.7 1.7 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_gamma PF02240.16 gi|383319345|ref|YP_005380186.1| - 2.2e-129 430.0 0.1 2.5e-129 429.8 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.15 gi|383319346|ref|YP_005380187.1| - 1.3e-150 500.2 0.8 1.7e-150 499.8 0.9 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|383319346|ref|YP_005380187.1| - 8.1e-67 223.5 4.6 1.8e-66 222.4 4.6 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain BofC_C PF08955.10 gi|383319346|ref|YP_005380187.1| - 0.13 12.3 0.0 0.71 10.0 0.0 2.0 2 0 0 2 2 2 0 BofC C-terminal domain DUF134 PF02001.16 gi|383319347|ref|YP_005380188.1| - 4.3e-24 84.9 0.0 6.8e-24 84.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|383319347|ref|YP_005380188.1| - 3.3e-06 26.7 0.1 5.2e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|383319347|ref|YP_005380188.1| - 6.5e-05 22.9 0.6 0.00023 21.1 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn helix zf-RING_2 PF13639.6 gi|383319347|ref|YP_005380188.1| - 0.0032 17.8 1.9 0.0084 16.4 1.9 1.7 1 0 0 1 1 1 1 Ring finger domain Zn_Tnp_IS1 PF03811.13 gi|383319347|ref|YP_005380188.1| - 0.0038 16.9 0.9 0.0038 16.9 0.9 2.5 2 0 0 2 2 2 1 InsA N-terminal domain HTH_23 PF13384.6 gi|383319347|ref|YP_005380188.1| - 0.0046 16.7 0.1 0.0092 15.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.12 gi|383319347|ref|YP_005380188.1| - 0.0048 16.7 0.0 0.0089 15.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HypA PF01155.19 gi|383319347|ref|YP_005380188.1| - 0.0065 16.5 2.3 0.011 15.8 2.3 1.6 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_1 PF00126.27 gi|383319347|ref|YP_005380188.1| - 0.02 14.9 0.2 0.084 12.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_ECF PF07638.11 gi|383319347|ref|YP_005380188.1| - 0.1 12.5 0.1 0.14 12.0 0.1 1.2 1 0 0 1 1 1 0 ECF sigma factor Sigma70_r4 PF04545.16 gi|383319347|ref|YP_005380188.1| - 0.11 12.0 0.1 0.22 11.0 0.1 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_8 PF02954.19 gi|383319347|ref|YP_005380188.1| - 0.16 11.7 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Zn_Tnp_IS91 PF14319.6 gi|383319347|ref|YP_005380188.1| - 0.49 10.5 2.8 0.81 9.8 2.8 1.6 1 1 0 1 1 1 0 Transposase zinc-binding domain Zn-ribbon_8 PF09723.10 gi|383319347|ref|YP_005380188.1| - 2.6 8.2 6.2 0.58 10.3 2.3 2.0 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.6 gi|383319347|ref|YP_005380188.1| - 6.9 7.4 8.3 1.1 10.0 0.5 3.2 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nitro_FeMo-Co PF02579.17 gi|383319348|ref|YP_005380189.1| - 3.7e-21 75.3 0.0 4.7e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ParA PF10609.9 gi|383319349|ref|YP_005380190.1| - 5e-89 298.0 0.1 6.1e-89 297.7 0.1 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|383319349|ref|YP_005380190.1| - 1.1e-18 67.5 0.0 2.7e-18 66.3 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|383319349|ref|YP_005380190.1| - 3.2e-09 36.9 0.1 9.2e-09 35.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|383319349|ref|YP_005380190.1| - 1.8e-07 30.8 0.0 2.8e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|383319349|ref|YP_005380190.1| - 4.2e-07 29.5 0.4 1.2e-06 27.9 0.2 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|383319349|ref|YP_005380190.1| - 6.3e-06 26.2 0.2 0.045 13.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain MeaB PF03308.16 gi|383319349|ref|YP_005380190.1| - 2e-05 23.7 0.1 3.1e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_NifH PF00142.18 gi|383319349|ref|YP_005380190.1| - 0.002 17.6 0.1 0.0047 16.4 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 gi|383319349|ref|YP_005380190.1| - 0.0048 16.7 0.0 0.0099 15.7 0.0 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|383319349|ref|YP_005380190.1| - 0.009 15.6 0.0 0.02 14.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|383319349|ref|YP_005380190.1| - 0.021 14.7 0.1 0.04 13.8 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase VirC1 PF07015.11 gi|383319349|ref|YP_005380190.1| - 0.023 14.0 0.0 0.038 13.3 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein CBP_BcsQ PF06564.12 gi|383319349|ref|YP_005380190.1| - 0.026 14.0 0.1 0.25 10.8 0.1 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ CIAPIN1 PF05093.13 gi|383319349|ref|YP_005380190.1| - 0.05 14.1 1.0 0.09 13.3 1.0 1.4 1 0 0 1 1 1 0 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis APS_kinase PF01583.20 gi|383319349|ref|YP_005380190.1| - 0.055 13.4 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_16 PF13191.6 gi|383319349|ref|YP_005380190.1| - 0.068 13.6 0.2 0.097 13.0 0.2 1.4 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|383319349|ref|YP_005380190.1| - 0.086 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_30 PF13604.6 gi|383319349|ref|YP_005380190.1| - 0.13 12.0 0.2 0.23 11.2 0.2 1.3 1 0 0 1 1 1 0 AAA domain DUF853 PF05872.12 gi|383319349|ref|YP_005380190.1| - 0.18 10.4 0.1 0.35 9.4 0.1 1.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) IstB_IS21 PF01695.17 gi|383319349|ref|YP_005380190.1| - 0.19 11.4 0.1 0.3 10.8 0.1 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|383319350|ref|YP_005380191.1| - 2.4e-53 180.3 0.0 6.9e-27 94.6 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|383319350|ref|YP_005380191.1| - 5.4e-09 36.3 1.0 0.098 12.4 0.0 4.1 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|383319350|ref|YP_005380191.1| - 6.8e-08 32.6 0.4 0.0045 16.9 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase SMC_N PF02463.19 gi|383319350|ref|YP_005380191.1| - 2.3e-06 27.2 4.2 0.017 14.6 0.0 4.0 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|383319350|ref|YP_005380191.1| - 1.6e-05 24.9 2.3 0.051 13.7 0.3 3.2 3 0 0 3 3 3 2 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|383319350|ref|YP_005380191.1| - 4.9e-05 23.8 0.1 0.36 11.2 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|383319350|ref|YP_005380191.1| - 0.0001 22.0 1.9 0.23 11.2 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|383319350|ref|YP_005380191.1| - 0.00065 19.4 0.2 0.12 12.0 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.14 gi|383319350|ref|YP_005380191.1| - 0.00075 19.4 0.6 1.3 8.9 0.1 2.4 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|383319350|ref|YP_005380191.1| - 0.00099 19.4 0.8 0.81 10.0 0.0 2.8 3 0 0 3 3 2 1 AAA domain PduV-EutP PF10662.9 gi|383319350|ref|YP_005380191.1| - 0.0015 18.2 0.1 2 8.1 0.0 3.1 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation PIF1 PF05970.14 gi|383319350|ref|YP_005380191.1| - 0.0028 16.9 0.1 1.1 8.4 0.0 2.3 2 0 0 2 2 2 2 PIF1-like helicase AAA_23 PF13476.6 gi|383319350|ref|YP_005380191.1| - 0.0034 17.9 1.5 0.98 9.9 0.3 2.3 2 0 0 2 2 2 1 AAA domain Anti-TRAP PF15777.5 gi|383319350|ref|YP_005380191.1| - 0.0083 16.1 2.1 0.026 14.5 2.3 1.7 2 0 0 2 2 1 1 Tryptophan RNA-binding attenuator protein inhibitory protein IstB_IS21 PF01695.17 gi|383319350|ref|YP_005380191.1| - 0.0097 15.7 0.2 2 8.1 0.0 3.0 3 0 0 3 3 3 1 IstB-like ATP binding protein FeoB_N PF02421.18 gi|383319350|ref|YP_005380191.1| - 0.013 15.0 0.7 10 5.6 0.0 3.3 3 0 0 3 3 3 0 Ferrous iron transport protein B AAA_30 PF13604.6 gi|383319350|ref|YP_005380191.1| - 0.016 14.9 0.1 2.9 7.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|383319350|ref|YP_005380191.1| - 0.017 14.3 2.0 0.69 9.1 0.1 2.5 2 0 0 2 2 2 0 NB-ARC domain Zeta_toxin PF06414.12 gi|383319350|ref|YP_005380191.1| - 0.02 14.2 0.0 0.21 10.8 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin NACHT PF05729.12 gi|383319350|ref|YP_005380191.1| - 0.025 14.5 0.6 1.6 8.6 0.0 3.0 3 0 0 3 3 3 0 NACHT domain PRK PF00485.18 gi|383319350|ref|YP_005380191.1| - 0.039 13.7 0.5 3.9 7.2 0.1 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|383319350|ref|YP_005380191.1| - 0.061 13.9 0.3 20 5.8 0.0 2.9 3 0 0 3 3 3 0 AAA domain Roc PF08477.13 gi|383319350|ref|YP_005380191.1| - 0.086 13.1 0.5 13 6.0 0.1 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase KAP_NTPase PF07693.14 gi|383319350|ref|YP_005380191.1| - 0.095 11.9 0.0 2.6 7.2 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain cobW PF02492.19 gi|383319350|ref|YP_005380191.1| - 0.15 11.7 1.5 11 5.5 0.0 3.3 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 gi|383319350|ref|YP_005380191.1| - 0.16 11.5 0.2 7.1 6.1 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region PhoH PF02562.16 gi|383319350|ref|YP_005380191.1| - 0.17 11.3 0.2 21 4.5 0.1 2.4 2 0 0 2 2 2 0 PhoH-like protein AAA_24 PF13479.6 gi|383319350|ref|YP_005380191.1| - 0.18 11.5 0.4 19 4.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|383319350|ref|YP_005380191.1| - 0.22 11.8 0.4 24 5.1 0.1 2.9 3 0 0 3 3 3 0 AAA domain DUF87 PF01935.17 gi|383319350|ref|YP_005380191.1| - 0.24 11.4 3.0 11 6.0 0.0 2.8 3 0 0 3 3 3 0 Helicase HerA, central domain Pox_A32 PF04665.12 gi|383319350|ref|YP_005380191.1| - 0.35 10.3 1.0 1.7 8.0 0.0 2.1 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_15 PF13175.6 gi|383319350|ref|YP_005380191.1| - 1.5 8.4 3.1 31 4.1 0.2 3.0 3 0 0 3 3 3 0 AAA ATPase domain Hydrolase_4 PF12146.8 gi|383319351|ref|YP_005380192.1| - 3.8e-23 82.0 0.1 3.8e-21 75.5 0.1 2.0 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|383319351|ref|YP_005380192.1| - 1.6e-18 67.3 0.1 1.2e-16 61.2 0.1 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|383319351|ref|YP_005380192.1| - 1.6e-10 42.0 0.0 2.1e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|383319351|ref|YP_005380192.1| - 0.0012 18.7 0.1 0.087 12.6 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Lipase_3 PF01764.25 gi|383319351|ref|YP_005380192.1| - 0.023 14.6 0.1 0.052 13.4 0.1 1.6 2 0 0 2 2 2 0 Lipase (class 3) LIP PF03583.14 gi|383319351|ref|YP_005380192.1| - 0.034 13.5 0.0 0.049 13.0 0.0 1.1 1 0 0 1 1 1 0 Secretory lipase Nitro_FeMo-Co PF02579.17 gi|383319352|ref|YP_005380193.1| - 4.8e-17 62.1 0.1 5.4e-17 61.9 0.1 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF5320 PF17253.2 gi|383319353|ref|YP_005380194.1| - 1.1e-26 93.8 7.7 1.5e-26 93.3 7.7 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5320) Matrilin_ccoil PF10393.9 gi|383319353|ref|YP_005380194.1| - 0.076 12.9 0.5 0.1 12.5 0.5 1.1 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF2205 PF10224.9 gi|383319353|ref|YP_005380194.1| - 0.091 12.8 0.1 0.12 12.4 0.1 1.1 1 0 0 1 1 1 0 Short coiled-coil protein CbiA PF01656.23 gi|383319354|ref|YP_005380195.1| - 4.9e-21 75.1 0.0 6.7e-21 74.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|383319354|ref|YP_005380195.1| - 5.4e-16 58.8 0.4 2.4e-10 40.3 0.1 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|383319354|ref|YP_005380195.1| - 2e-10 40.9 0.5 7.8e-07 29.2 0.1 2.1 2 0 0 2 2 2 2 AAA domain Fer4 PF00037.27 gi|383319354|ref|YP_005380195.1| - 5.6e-09 35.4 16.4 1.4e-05 24.7 2.5 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_NifH PF00142.18 gi|383319354|ref|YP_005380195.1| - 1.1e-08 34.9 0.1 0.00045 19.7 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_16 PF13484.6 gi|383319354|ref|YP_005380195.1| - 9.5e-06 26.5 14.3 0.0047 17.8 0.4 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|383319354|ref|YP_005380195.1| - 2.5e-05 24.3 6.9 2.5e-05 24.3 6.9 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383319354|ref|YP_005380195.1| - 0.00011 22.2 11.6 0.0012 18.8 0.9 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain MipZ PF09140.11 gi|383319354|ref|YP_005380195.1| - 0.00011 21.6 0.0 0.00026 20.4 0.0 1.6 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|383319354|ref|YP_005380195.1| - 0.00018 20.8 1.1 0.00029 20.1 0.8 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_21 PF14697.6 gi|383319354|ref|YP_005380195.1| - 0.00083 19.4 6.5 0.00083 19.4 6.5 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|383319354|ref|YP_005380195.1| - 0.002 17.7 0.1 0.0034 17.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.11 gi|383319354|ref|YP_005380195.1| - 0.0093 15.3 0.3 0.014 14.7 0.3 1.2 1 0 0 1 1 1 1 VirC1 protein Fer4_2 PF12797.7 gi|383319354|ref|YP_005380195.1| - 0.023 14.8 2.4 0.023 14.8 2.4 3.3 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383319354|ref|YP_005380195.1| - 0.041 14.5 18.1 0.14 12.8 2.9 3.1 2 2 1 3 3 3 0 4Fe-4S dicluster domain CLP1_P PF16575.5 gi|383319354|ref|YP_005380195.1| - 0.063 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CBP_BcsQ PF06564.12 gi|383319354|ref|YP_005380195.1| - 0.11 11.9 0.0 0.38 10.2 0.0 1.8 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ PhoH PF02562.16 gi|383319354|ref|YP_005380195.1| - 0.13 11.7 1.2 0.21 11.0 1.2 1.3 1 0 0 1 1 1 0 PhoH-like protein SRP54 PF00448.22 gi|383319354|ref|YP_005380195.1| - 0.13 11.8 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_26 PF13500.6 gi|383319354|ref|YP_005380195.1| - 0.17 11.7 0.5 0.61 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|383319354|ref|YP_005380195.1| - 0.2 11.4 0.3 0.3 10.8 0.3 1.2 1 0 0 1 1 1 0 AAA domain Fer4_10 PF13237.6 gi|383319354|ref|YP_005380195.1| - 0.31 11.2 17.9 0.24 11.6 11.6 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383319354|ref|YP_005380195.1| - 0.77 10.3 14.1 0.78 10.2 0.3 3.3 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383319354|ref|YP_005380195.1| - 1.2 9.9 5.7 2.4 9.0 0.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|383319354|ref|YP_005380195.1| - 1.6 9.3 9.5 4.8 7.8 1.2 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CbiA PF01656.23 gi|383319355|ref|YP_005380196.1| - 1.5e-14 54.1 0.0 2e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.27 gi|383319355|ref|YP_005380196.1| - 2.9e-10 39.5 17.5 1.6e-05 24.5 3.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain ParA PF10609.9 gi|383319355|ref|YP_005380196.1| - 4.9e-09 36.0 0.8 0.00014 21.4 0.1 2.9 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_6 PF12837.7 gi|383319355|ref|YP_005380196.1| - 5.8e-09 35.7 14.3 4.3e-05 23.4 1.5 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383319355|ref|YP_005380196.1| - 1.1e-06 29.1 13.5 4.1e-06 27.3 12.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383319355|ref|YP_005380196.1| - 3.6e-06 27.0 10.8 1.2e-05 25.4 10.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain GTP_EFTU PF00009.27 gi|383319355|ref|YP_005380196.1| - 2.6e-05 23.9 0.2 0.0016 18.0 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Fer4_2 PF12797.7 gi|383319355|ref|YP_005380196.1| - 3.5e-05 23.7 14.0 0.034 14.2 2.3 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain RsgA_GTPase PF03193.16 gi|383319355|ref|YP_005380196.1| - 3.9e-05 23.6 0.0 0.0065 16.4 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase AAA_31 PF13614.6 gi|383319355|ref|YP_005380196.1| - 6.5e-05 22.9 2.0 0.083 12.8 0.8 2.2 2 0 0 2 2 2 2 AAA domain Fer4_21 PF14697.6 gi|383319355|ref|YP_005380196.1| - 6.5e-05 23.0 9.2 0.0002 21.4 9.2 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383319355|ref|YP_005380196.1| - 0.00016 22.5 12.7 0.025 15.5 3.2 2.7 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|383319355|ref|YP_005380196.1| - 0.00048 20.2 23.5 0.0024 17.9 12.3 2.7 2 2 1 3 3 3 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|383319355|ref|YP_005380196.1| - 0.00072 18.8 1.2 0.0011 18.2 1.2 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_4 PF12800.7 gi|383319355|ref|YP_005380196.1| - 0.0016 18.8 15.5 0.049 14.2 1.8 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|383319355|ref|YP_005380196.1| - 0.011 16.2 11.8 0.26 11.9 1.1 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|383319355|ref|YP_005380196.1| - 0.029 14.7 0.1 0.21 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_26 PF13500.6 gi|383319355|ref|YP_005380196.1| - 0.034 14.0 0.9 1.1 9.0 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|383319355|ref|YP_005380196.1| - 0.052 13.1 0.8 0.11 12.1 0.8 1.5 1 0 0 1 1 1 0 AAA domain Fer4_8 PF13183.6 gi|383319355|ref|YP_005380196.1| - 0.084 13.3 14.1 0.95 10.0 2.8 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain AAA_22 PF13401.6 gi|383319355|ref|YP_005380196.1| - 0.13 12.5 0.5 3.2 8.0 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|383319355|ref|YP_005380196.1| - 0.14 12.4 0.1 0.29 11.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|383319355|ref|YP_005380196.1| - 0.16 12.5 0.0 0.34 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|383319355|ref|YP_005380196.1| - 0.16 12.4 0.0 1.4 9.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Herpeto_peptide PF14409.6 gi|383319355|ref|YP_005380196.1| - 0.17 12.1 2.2 0.21 11.8 0.0 2.2 2 1 1 3 3 2 0 Ribosomally synthesized peptide in Herpetosiphon DUF2075 PF09848.9 gi|383319355|ref|YP_005380196.1| - 0.28 10.4 0.1 0.39 9.9 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|383319355|ref|YP_005380196.1| - 0.5 10.1 2.1 0.66 9.7 1.1 1.7 2 0 0 2 2 1 0 AAA domain Fer4_22 PF17179.4 gi|383319355|ref|YP_005380196.1| - 0.52 11.2 0.2 0.52 11.2 0.2 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain PhoH PF02562.16 gi|383319355|ref|YP_005380196.1| - 0.57 9.6 1.4 2.6 7.5 0.3 2.2 2 0 0 2 2 2 0 PhoH-like protein Nitro_FeMo-Co PF02579.17 gi|383319356|ref|YP_005380197.1| - 2e-24 85.7 0.0 2.3e-24 85.5 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF134 PF02001.16 gi|383319357|ref|YP_005380198.1| - 5.9e-23 81.3 0.2 6.6e-23 81.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|383319357|ref|YP_005380198.1| - 2.9e-07 30.0 0.1 4.5e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|383319357|ref|YP_005380198.1| - 0.00047 19.6 0.0 0.0008 18.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 gi|383319357|ref|YP_005380198.1| - 0.0014 18.4 0.0 0.0031 17.3 0.0 1.5 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_ECF PF07638.11 gi|383319357|ref|YP_005380198.1| - 0.0025 17.7 0.2 0.0032 17.4 0.2 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_11 PF08279.12 gi|383319357|ref|YP_005380198.1| - 0.0076 16.2 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain Lactamase_B PF00753.27 gi|383319358|ref|YP_005380199.1| - 1.5e-12 48.0 0.1 2e-12 47.5 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|383319358|ref|YP_005380199.1| - 1.8e-09 37.4 0.0 3.2e-09 36.6 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|383319358|ref|YP_005380199.1| - 0.035 13.5 0.0 0.05 13.0 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|383319358|ref|YP_005380199.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain B12-binding PF02310.19 gi|383319359|ref|YP_005380200.1| - 1.2e-26 93.1 0.0 4.7e-26 91.2 0.0 2.0 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.21 gi|383319359|ref|YP_005380200.1| - 3.1e-26 92.7 0.0 7e-25 88.3 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily PGK PF00162.19 gi|383319360|ref|YP_005380201.1| - 3.6e-108 361.9 0.0 4.1e-108 361.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Cation_ATPase_N PF00690.26 gi|383319361|ref|YP_005380202.1| - 4e-09 36.0 0.0 5.8e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus SLC3A2_N PF16028.5 gi|383319362|ref|YP_005380203.1| - 0.21 11.1 0.8 0.2 11.3 0.8 1.0 1 0 0 1 1 1 0 Solute carrier family 3 member 2 N-terminus Acetyltransf_10 PF13673.7 gi|383319363|ref|YP_005380204.1| - 2e-06 27.8 0.1 2e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|383319363|ref|YP_005380204.1| - 2.6e-05 24.5 0.0 6.5e-05 23.1 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|383319363|ref|YP_005380204.1| - 0.0002 21.5 0.3 0.0011 19.1 0.3 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|383319363|ref|YP_005380204.1| - 0.00025 20.8 0.0 0.00046 19.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_7 PF13508.7 gi|383319363|ref|YP_005380204.1| - 0.01 16.2 0.0 0.027 14.9 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain YvrJ PF12841.7 gi|383319363|ref|YP_005380204.1| - 0.085 12.4 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 YvrJ protein family LAM_C PF12544.8 gi|383319364|ref|YP_005380205.1| - 9.8e-46 155.0 0.0 1.6e-45 154.3 0.0 1.4 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Radical_SAM PF04055.21 gi|383319364|ref|YP_005380205.1| - 3.2e-10 40.6 0.0 6.9e-10 39.5 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|383319364|ref|YP_005380205.1| - 0.023 15.0 0.0 0.048 13.9 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|383319364|ref|YP_005380205.1| - 0.031 14.4 0.1 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain MS_channel PF00924.18 gi|383319365|ref|YP_005380206.1| - 3.4e-45 154.1 0.4 3.4e-45 154.1 0.4 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel YajC PF02699.15 gi|383319365|ref|YP_005380206.1| - 0.49 10.3 0.1 0.49 10.3 0.1 2.2 2 0 0 2 2 2 0 Preprotein translocase subunit Radical_SAM PF04055.21 gi|383319367|ref|YP_005380208.1| - 6.2e-06 26.7 0.1 1.1e-05 25.9 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|383319367|ref|YP_005380208.1| - 0.0016 18.6 0.2 0.0034 17.5 0.2 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|383319367|ref|YP_005380208.1| - 0.0039 17.5 0.1 0.0078 16.5 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain MtrE PF04206.12 gi|383319370|ref|YP_005380211.1| - 3.6e-119 397.1 13.6 4.1e-119 396.9 13.6 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E MtrD PF04207.12 gi|383319371|ref|YP_005380212.1| - 2.2e-72 243.3 36.9 3e-70 236.3 36.9 2.1 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MgtE PF01769.16 gi|383319371|ref|YP_005380212.1| - 0.0075 16.6 10.2 0.0075 16.6 10.2 3.3 3 1 0 3 3 3 1 Divalent cation transporter DHHC PF01529.20 gi|383319371|ref|YP_005380212.1| - 4.1 7.5 8.0 2.3 8.3 0.5 2.4 2 0 0 2 2 2 0 DHHC palmitoyltransferase MtrC PF04211.13 gi|383319372|ref|YP_005380213.1| - 4.3e-85 285.0 25.7 4.7e-85 284.9 25.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C US10 PF17617.2 gi|383319372|ref|YP_005380213.1| - 0.17 11.9 0.7 0.49 10.5 0.3 2.0 2 0 0 2 2 2 0 Viral unique short region 10 HKR_ArcB_TM PF18415.1 gi|383319372|ref|YP_005380213.1| - 6.3 7.7 8.2 0.85 10.5 0.9 2.7 2 1 0 2 2 2 0 Histidine kinase receptor ArcB trans-membrane domain MtrB PF05440.12 gi|383319373|ref|YP_005380214.1| - 3.8e-37 126.6 0.1 4.4e-37 126.4 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrF PF09472.10 gi|383319373|ref|YP_005380214.1| - 0.0049 16.2 0.2 0.0095 15.3 0.2 1.4 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) UPF0184 PF03670.13 gi|383319373|ref|YP_005380214.1| - 0.077 13.4 0.0 0.091 13.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0184) MtrA PF04208.14 gi|383319374|ref|YP_005380215.1| - 2.2e-82 274.9 0.9 2.9e-82 274.4 0.9 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A GatB_Yqey PF02637.18 gi|383319374|ref|YP_005380215.1| - 0.055 13.4 0.1 0.094 12.6 0.1 1.4 1 0 0 1 1 1 0 GatB domain MtrF PF09472.10 gi|383319375|ref|YP_005380216.1| - 4.6e-20 70.8 0.1 5.1e-20 70.6 0.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrG PF04210.13 gi|383319376|ref|YP_005380217.1| - 2.1e-27 94.8 0.2 2.4e-27 94.6 0.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G PLAC9 PF15205.6 gi|383319376|ref|YP_005380217.1| - 0.00056 20.3 0.0 0.00061 20.1 0.0 1.2 1 0 0 1 1 1 1 Placenta-specific protein 9 MtrH PF02007.18 gi|383319377|ref|YP_005380218.1| - 5.5e-114 380.3 3.6 6.4e-114 380.1 3.6 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit Peptidase_U32 PF01136.19 gi|383319377|ref|YP_005380218.1| - 0.09 11.9 0.1 0.14 11.3 0.1 1.2 1 0 0 1 1 1 0 Peptidase family U32 Na_H_Exchanger PF00999.21 gi|383319378|ref|YP_005380219.1| - 1.4e-61 208.4 47.5 2.2e-35 122.2 22.8 2.0 2 0 0 2 2 2 2 Sodium/hydrogen exchanger family TrkH PF02386.16 gi|383319379|ref|YP_005380220.1| - 5.1e-67 226.4 19.6 4.8e-66 223.2 19.6 2.0 1 1 0 1 1 1 1 Cation transport protein TrkA_N PF02254.18 gi|383319380|ref|YP_005380221.1| - 2.2e-26 92.4 2.1 3.3e-26 91.8 2.1 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|383319380|ref|YP_005380221.1| - 7.2e-16 57.8 2.5 7.7e-16 57.7 0.7 2.0 2 0 0 2 2 2 1 TrkA-C domain Sacchrp_dh_NADP PF03435.18 gi|383319380|ref|YP_005380221.1| - 1.8e-08 34.7 0.8 3e-08 34.0 0.8 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|383319380|ref|YP_005380221.1| - 9.2e-07 28.9 0.7 2.1e-06 27.7 0.6 1.6 1 1 1 2 2 2 1 NAD(P)H-binding NAD_binding_2 PF03446.15 gi|383319380|ref|YP_005380221.1| - 5.3e-06 26.7 0.4 1.8e-05 25.0 0.3 1.8 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|383319380|ref|YP_005380221.1| - 1.6e-05 25.3 0.5 3e-05 24.4 0.5 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|383319380|ref|YP_005380221.1| - 0.00054 20.5 1.0 0.0013 19.2 0.6 1.9 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|383319380|ref|YP_005380221.1| - 0.00059 19.9 0.7 0.0012 18.9 0.6 1.5 2 0 0 2 2 1 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|383319380|ref|YP_005380221.1| - 0.00096 18.5 2.8 0.0016 17.8 2.0 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|383319380|ref|YP_005380221.1| - 0.0013 18.7 0.3 0.0018 18.2 0.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|383319380|ref|YP_005380221.1| - 0.0013 19.0 1.1 0.0031 17.8 1.0 1.8 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|383319380|ref|YP_005380221.1| - 0.0021 17.7 2.0 0.0034 17.0 0.7 1.9 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|383319380|ref|YP_005380221.1| - 0.0024 17.2 0.1 0.0039 16.6 0.1 1.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|383319380|ref|YP_005380221.1| - 0.0044 17.5 0.0 0.006 17.1 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain ADH_zinc_N PF00107.26 gi|383319380|ref|YP_005380221.1| - 0.0074 16.3 0.3 0.013 15.4 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase CoA_binding PF02629.19 gi|383319380|ref|YP_005380221.1| - 0.0087 16.7 1.8 0.024 15.3 1.8 1.8 1 0 0 1 1 1 1 CoA binding domain GCV_T PF01571.21 gi|383319380|ref|YP_005380221.1| - 0.0089 15.4 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain adh_short PF00106.25 gi|383319380|ref|YP_005380221.1| - 0.0099 15.4 0.2 0.018 14.5 0.1 1.5 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|383319380|ref|YP_005380221.1| - 0.022 14.3 0.9 0.036 13.6 0.8 1.4 1 1 0 1 1 1 0 NmrA-like family DUF1188 PF06690.11 gi|383319380|ref|YP_005380221.1| - 0.03 13.9 1.4 0.03 13.9 0.3 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) NAD_Gly3P_dh_N PF01210.23 gi|383319380|ref|YP_005380221.1| - 0.089 12.8 0.6 0.15 12.0 0.5 1.5 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF563 PF04577.14 gi|383319380|ref|YP_005380221.1| - 0.13 12.4 0.1 3.2 7.9 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF563) FAD_binding_3 PF01494.19 gi|383319380|ref|YP_005380221.1| - 0.17 11.1 0.2 0.72 9.0 0.0 1.8 2 0 0 2 2 2 0 FAD binding domain ThiF PF00899.21 gi|383319380|ref|YP_005380221.1| - 0.5 9.7 2.1 0.75 9.1 0.9 1.7 1 1 1 2 2 2 0 ThiF family DUF2114 PF09887.9 gi|383319381|ref|YP_005380222.1| - 1.6e-227 755.4 0.4 1.8e-227 755.2 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) DUF1894 PF08979.11 gi|383319382|ref|YP_005380223.1| - 4.5e-34 116.7 0.1 5.7e-34 116.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF2098 PF09871.9 gi|383319384|ref|YP_005380225.1| - 1.1e-27 96.2 4.4 1.4e-27 95.8 4.4 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) PUA_2 PF14306.6 gi|383319384|ref|YP_005380225.1| - 0.016 14.9 0.2 0.027 14.2 0.1 1.5 1 1 0 1 1 1 0 PUA-like domain CNPase PF05881.12 gi|383319384|ref|YP_005380225.1| - 0.059 12.9 0.1 0.099 12.2 0.1 1.3 1 1 0 1 1 1 0 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase) Cpn60_TCP1 PF00118.24 gi|383319385|ref|YP_005380226.1| - 9.7e-176 585.2 9.2 1.2e-175 584.9 9.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Lys_export PF03956.13 gi|383319386|ref|YP_005380227.1| - 4.3e-06 26.4 6.5 5.2e-06 26.1 6.5 1.1 1 0 0 1 1 1 1 Lysine exporter LysO Asp-Al_Ex PF06826.12 gi|383319386|ref|YP_005380227.1| - 0.033 14.0 9.4 0.043 13.6 9.4 1.1 1 0 0 1 1 1 0 Predicted Permease Membrane Region YwiC PF14256.6 gi|383319386|ref|YP_005380227.1| - 0.079 13.3 3.4 0.095 13.0 3.4 1.2 1 0 0 1 1 1 0 YwiC-like protein Deltameth_res PF16020.5 gi|383319386|ref|YP_005380227.1| - 2.9 7.8 4.3 2.1 8.3 0.3 2.3 2 0 0 2 2 2 0 Deltamethrin resistance SecE PF00584.20 gi|383319386|ref|YP_005380227.1| - 6 6.9 12.8 4.3 7.3 0.7 3.1 3 0 0 3 3 3 0 SecE/Sec61-gamma subunits of protein translocation complex Lys_export PF03956.13 gi|383319387|ref|YP_005380228.1| - 1.1e-62 211.0 21.5 1.3e-62 210.7 21.5 1.0 1 0 0 1 1 1 1 Lysine exporter LysO DUF2273 PF10031.9 gi|383319387|ref|YP_005380228.1| - 0.16 12.0 0.2 0.16 12.0 0.2 5.1 5 1 0 5 5 5 0 Small integral membrane protein (DUF2273) DHHA1 PF02272.19 gi|383319388|ref|YP_005380229.1| - 3.5e-17 63.1 1.1 3.5e-17 63.1 1.1 1.8 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|383319388|ref|YP_005380229.1| - 0.00083 19.6 0.0 0.0015 18.8 0.0 1.4 1 0 0 1 1 1 1 DHH family DUF2150 PF09920.9 gi|383319389|ref|YP_005380230.1| - 5e-62 209.2 1.9 5.7e-62 209.0 1.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) AA_kinase PF00696.28 gi|383319390|ref|YP_005380231.1| - 3.3e-10 40.0 0.0 0.00013 21.7 0.0 2.1 1 1 0 2 2 2 2 Amino acid kinase family DJ-1_PfpI PF01965.24 gi|383319390|ref|YP_005380231.1| - 0.098 12.5 0.1 2.5 7.9 0.0 2.1 2 0 0 2 2 2 0 DJ-1/PfpI family TauE PF01925.19 gi|383319391|ref|YP_005380232.1| - 6.7e-47 160.1 36.1 7.6e-47 159.9 36.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3938 PF13074.6 gi|383319391|ref|YP_005380232.1| - 0.016 15.5 4.0 0.085 13.1 0.5 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3938) TMEM141 PF15110.6 gi|383319391|ref|YP_005380232.1| - 2.2 8.9 6.4 11 6.7 0.2 3.1 3 1 1 4 4 4 0 TMEM141 protein family HTH_5 PF01022.20 gi|383319392|ref|YP_005380233.1| - 4.1e-13 49.0 0.1 6.3e-13 48.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|383319392|ref|YP_005380233.1| - 7e-10 38.8 0.0 9.9e-10 38.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|383319392|ref|YP_005380233.1| - 0.002 18.3 0.0 0.0036 17.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|383319392|ref|YP_005380233.1| - 0.0031 17.3 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|383319392|ref|YP_005380233.1| - 0.0033 17.4 0.1 0.0059 16.6 0.1 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|383319392|ref|YP_005380233.1| - 0.015 14.8 0.0 0.17 11.5 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|383319392|ref|YP_005380233.1| - 0.016 15.1 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 MarR family HxlR PF01638.17 gi|383319392|ref|YP_005380233.1| - 0.024 14.5 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Rio2_N PF09202.11 gi|383319392|ref|YP_005380233.1| - 0.09 13.0 0.1 0.15 12.3 0.1 1.3 1 0 0 1 1 1 0 Rio2, N-terminal Thioredoxin_3 PF13192.6 gi|383319394|ref|YP_005380235.1| - 1.3e-24 86.0 0.8 1.4e-24 85.9 0.8 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|383319394|ref|YP_005380235.1| - 0.0019 18.4 0.0 0.0024 18.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin ArsD PF06953.11 gi|383319394|ref|YP_005380235.1| - 0.029 14.7 0.0 0.035 14.5 0.0 1.3 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD Thioredoxin PF00085.20 gi|383319394|ref|YP_005380235.1| - 0.078 13.0 0.1 0.086 12.8 0.1 1.2 1 0 0 1 1 1 0 Thioredoxin Glutaredoxin PF00462.24 gi|383319394|ref|YP_005380235.1| - 0.086 13.1 0.4 0.17 12.1 0.4 1.6 1 1 0 1 1 1 0 Glutaredoxin ArsP_1 PF03773.13 gi|383319395|ref|YP_005380236.1| - 2.5e-79 266.5 28.5 3.2e-79 266.2 28.5 1.0 1 0 0 1 1 1 1 Predicted permease DUF2897 PF11446.8 gi|383319395|ref|YP_005380236.1| - 0.0059 16.5 0.7 0.066 13.1 0.3 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2897) MtrA PF04208.14 gi|383319396|ref|YP_005380237.1| - 1.1e-37 129.3 0.0 1.4e-37 129.0 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A SBF PF01758.16 gi|383319397|ref|YP_005380238.1| - 1.2e-62 211.1 13.0 1.2e-62 211.1 13.0 1.9 3 0 0 3 3 3 1 Sodium Bile acid symporter family Pyr_redox_2 PF07992.14 gi|383319398|ref|YP_005380239.1| - 4e-36 124.8 2.4 4.6e-36 124.5 2.4 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|383319398|ref|YP_005380239.1| - 1.3e-22 80.5 2.3 9.4e-18 64.5 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|383319398|ref|YP_005380239.1| - 1.6e-07 30.8 5.2 7.7e-05 21.9 1.5 2.7 2 2 1 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|383319398|ref|YP_005380239.1| - 2.2e-07 29.9 0.4 0.0003 19.6 0.3 2.4 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|383319398|ref|YP_005380239.1| - 4e-06 26.2 6.9 0.0004 19.6 0.9 3.4 3 1 1 4 4 4 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|383319398|ref|YP_005380239.1| - 8.7e-06 25.2 0.2 3.6e-05 23.2 0.0 2.0 3 0 0 3 3 3 1 FAD binding domain Pyr_redox PF00070.27 gi|383319398|ref|YP_005380239.1| - 8.7e-05 23.0 4.7 0.0093 16.5 0.0 3.6 4 0 0 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|383319398|ref|YP_005380239.1| - 0.0001 21.6 0.6 0.00074 18.8 0.4 2.3 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|383319398|ref|YP_005380239.1| - 0.00019 21.2 3.8 0.32 10.5 3.3 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|383319398|ref|YP_005380239.1| - 0.00036 20.0 0.9 0.00062 19.2 0.9 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|383319398|ref|YP_005380239.1| - 0.027 14.7 0.5 0.027 14.7 0.5 1.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|383319398|ref|YP_005380239.1| - 0.028 13.6 0.5 4.7 6.2 0.2 2.3 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|383319398|ref|YP_005380239.1| - 0.077 12.0 2.1 0.69 8.9 0.9 2.2 1 1 1 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|383319398|ref|YP_005380239.1| - 0.49 10.4 1.7 20 5.1 1.1 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding TfuA PF07812.12 gi|383319400|ref|YP_005380241.1| - 2e-43 146.9 0.3 1.1e-42 144.5 0.1 2.1 2 0 0 2 2 2 1 TfuA-like protein YcaO PF02624.16 gi|383319401|ref|YP_005380242.1| - 5.1e-87 292.2 0.0 6.2e-87 291.9 0.0 1.1 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding PDDEXK_1 PF12705.7 gi|383319402|ref|YP_005380243.1| - 2e-30 106.6 1.5 2.3e-30 106.4 1.5 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF2800 PF10926.8 gi|383319402|ref|YP_005380243.1| - 1.7e-05 24.2 0.0 2.1e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) Cas_Cas4 PF01930.17 gi|383319402|ref|YP_005380243.1| - 0.00088 19.4 0.0 0.043 13.9 0.0 2.7 1 1 1 2 2 2 1 Domain of unknown function DUF83 NAD_synthase PF02540.17 gi|383319403|ref|YP_005380244.1| - 1.2e-05 24.6 0.0 9.7e-05 21.6 0.0 2.1 2 0 0 2 2 2 1 NAD synthase ATP_bind_3 PF01171.20 gi|383319403|ref|YP_005380244.1| - 0.00049 19.9 0.1 0.0017 18.2 0.1 1.8 1 1 0 1 1 1 1 PP-loop family Asn_synthase PF00733.21 gi|383319403|ref|YP_005380244.1| - 0.0048 16.6 0.0 0.0076 16.0 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|383319403|ref|YP_005380244.1| - 0.011 15.2 0.0 0.06 12.8 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|383319403|ref|YP_005380244.1| - 0.066 12.0 0.0 0.28 9.9 0.0 2.1 2 1 0 2 2 2 0 tRNA methyl transferase DUF883 PF05957.13 gi|383319404|ref|YP_005380245.1| - 0.0089 16.6 0.1 0.015 15.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF883) GAIN PF16489.5 gi|383319404|ref|YP_005380245.1| - 0.081 12.3 0.0 0.089 12.2 0.0 1.1 1 0 0 1 1 1 0 GPCR-Autoproteolysis INducing (GAIN) domain Phage_holin_3_6 PF07332.11 gi|383319405|ref|YP_005380246.1| - 0.0051 16.8 8.3 0.0064 16.5 8.3 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF2721 PF11026.8 gi|383319405|ref|YP_005380246.1| - 0.12 12.2 8.5 0.17 11.8 8.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) MMPL PF03176.15 gi|383319405|ref|YP_005380246.1| - 9.3 5.1 9.9 13 4.6 9.9 1.2 1 0 0 1 1 1 0 MMPL family DUF883 PF05957.13 gi|383319406|ref|YP_005380247.1| - 1.4e-10 41.6 4.5 2e-10 41.2 4.5 1.3 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) ApoO PF09769.9 gi|383319406|ref|YP_005380247.1| - 0.041 13.8 0.0 0.051 13.5 0.0 1.1 1 0 0 1 1 1 0 Apolipoprotein O YtxH PF12732.7 gi|383319406|ref|YP_005380247.1| - 0.79 10.3 11.6 1.5 9.4 2.6 2.3 2 1 0 2 2 2 0 YtxH-like protein PPS_PS PF02006.16 gi|383319407|ref|YP_005380248.1| - 1.9e-76 255.5 0.5 2.5e-76 255.2 0.5 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase TPP_enzyme_M PF00205.22 gi|383319407|ref|YP_005380248.1| - 0.054 13.2 1.0 0.26 11.0 0.2 2.3 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain DUF2884 PF11101.8 gi|383319407|ref|YP_005380248.1| - 0.076 12.5 0.3 0.12 11.8 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) MarC PF01914.17 gi|383319408|ref|YP_005380249.1| - 2.8e-59 199.9 13.0 3.1e-59 199.8 13.0 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein SfLAP PF11139.8 gi|383319408|ref|YP_005380249.1| - 0.026 14.0 0.1 0.026 14.0 0.1 2.3 2 0 0 2 2 2 0 Sap, sulfolipid-1-addressing protein TrmB PF01978.19 gi|383319409|ref|YP_005380250.1| - 4.7e-19 68.1 0.1 8.9e-19 67.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|383319409|ref|YP_005380250.1| - 0.00015 21.1 0.0 0.00061 19.1 0.0 1.9 1 1 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.10 gi|383319409|ref|YP_005380250.1| - 0.00017 21.3 0.0 0.00036 20.3 0.0 1.6 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|383319409|ref|YP_005380250.1| - 0.00059 19.7 0.0 0.0014 18.5 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|383319409|ref|YP_005380250.1| - 0.0057 16.5 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|383319409|ref|YP_005380250.1| - 0.011 15.4 0.0 0.042 13.5 0.0 2.1 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.11 gi|383319409|ref|YP_005380250.1| - 0.029 13.9 0.8 0.13 11.9 0.0 2.4 3 0 0 3 3 3 0 CodY helix-turn-helix domain Rrf2 PF02082.20 gi|383319409|ref|YP_005380250.1| - 0.037 14.4 0.0 0.092 13.1 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.6 gi|383319409|ref|YP_005380250.1| - 0.046 14.2 0.4 1.2 9.7 0.0 3.1 3 1 1 4 4 3 0 Winged helix DNA-binding domain AbiEi_4 PF13338.6 gi|383319409|ref|YP_005380250.1| - 0.047 13.8 0.3 0.19 11.9 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin DUF1840 PF08895.11 gi|383319409|ref|YP_005380250.1| - 0.049 14.0 0.4 1.2 9.5 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1840) HTH_20 PF12840.7 gi|383319409|ref|YP_005380250.1| - 0.054 13.6 0.0 0.61 10.2 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain PadR PF03551.14 gi|383319409|ref|YP_005380250.1| - 0.083 12.9 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Phage_Gp23 PF10669.9 gi|383319409|ref|YP_005380250.1| - 0.092 13.1 0.1 0.14 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) Radical_SAM PF04055.21 gi|383319410|ref|YP_005380251.1| - 2.2e-17 64.0 1.5 1.3e-15 58.2 1.5 2.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|383319410|ref|YP_005380251.1| - 1.1e-06 29.0 0.9 3.2e-05 24.2 0.0 2.3 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|383319410|ref|YP_005380251.1| - 1.5e-05 25.1 0.9 6.7e-05 23.0 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain zf-Di19 PF05605.12 gi|383319410|ref|YP_005380251.1| - 2.3 8.6 5.3 12 6.3 0.1 3.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.12 gi|383319410|ref|YP_005380251.1| - 4.7 6.8 6.3 5.5 6.6 1.3 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding Radical_SAM PF04055.21 gi|383319411|ref|YP_005380252.1| - 1.8e-20 74.0 0.2 6.4e-20 72.2 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily zf-C4_Topoisom PF01396.19 gi|383319411|ref|YP_005380252.1| - 0.0014 18.3 2.5 1 9.2 0.0 2.8 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger DpnI PF06044.12 gi|383319411|ref|YP_005380252.1| - 0.065 12.9 0.3 8.5 6.0 0.1 2.4 2 0 0 2 2 2 0 Dam-replacing family HEAT_EZ PF13513.6 gi|383319411|ref|YP_005380252.1| - 0.081 13.4 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 HEAT-like repeat Zn-ribbon_8 PF09723.10 gi|383319411|ref|YP_005380252.1| - 0.12 12.5 7.3 5.5 7.2 0.2 4.3 3 1 1 4 4 4 0 Zinc ribbon domain Fer4_12 PF13353.6 gi|383319411|ref|YP_005380252.1| - 0.18 12.1 0.9 0.44 10.8 0.9 1.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain DZR PF12773.7 gi|383319411|ref|YP_005380252.1| - 0.33 11.0 0.1 0.33 11.0 0.1 3.7 3 2 0 3 3 3 0 Double zinc ribbon CarboxypepD_reg PF13620.6 gi|383319412|ref|YP_005380253.1| - 5.8e-21 74.6 8.2 1.3e-08 35.0 0.1 4.5 4 0 0 4 4 4 3 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|383319412|ref|YP_005380253.1| - 2.8e-11 43.1 0.1 1.6e-10 40.7 0.0 2.2 2 0 0 2 2 2 1 PEGA domain CarbopepD_reg_2 PF13715.6 gi|383319412|ref|YP_005380253.1| - 1e-10 41.4 10.8 0.00048 20.1 0.3 5.2 4 1 0 4 4 4 2 CarboxypepD_reg-like domain Dioxygenase_C PF00775.21 gi|383319412|ref|YP_005380253.1| - 4.3e-08 32.8 0.4 0.0062 16.0 0.0 2.4 2 0 0 2 2 2 2 Dioxygenase Big_1 PF02369.16 gi|383319412|ref|YP_005380253.1| - 6.7e-08 32.4 4.8 0.0024 17.8 0.3 3.4 2 1 0 2 2 2 2 Bacterial Ig-like domain (group 1) DUF1416 PF07210.12 gi|383319412|ref|YP_005380253.1| - 2.1e-06 27.5 0.0 0.015 15.2 0.0 3.4 3 0 0 3 3 3 2 Protein of unknown function (DUF1416) bMG3 PF11974.8 gi|383319412|ref|YP_005380253.1| - 3.2e-06 27.1 0.0 0.00064 19.7 0.0 3.4 3 1 0 3 3 3 1 Bacterial alpha-2-macroglobulin MG3 domain SdrD_B PF17210.3 gi|383319412|ref|YP_005380253.1| - 5.4e-06 26.6 7.1 0.047 13.9 0.3 3.5 3 0 0 3 3 3 2 SdrD B-like domain DUF4198 PF10670.9 gi|383319412|ref|YP_005380253.1| - 1.5e-05 25.5 0.6 1.7 8.9 0.0 3.5 3 0 0 3 3 3 2 Domain of unknown function (DUF4198) fn3_3 PF14686.6 gi|383319412|ref|YP_005380253.1| - 3.3e-05 23.6 3.3 9.7e-05 22.1 1.2 2.5 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II Big_6 PF17936.1 gi|383319412|ref|YP_005380253.1| - 0.0001 22.5 1.3 0.0055 17.0 0.1 2.7 2 1 0 2 2 2 1 Bacterial Ig domain SpaA PF17802.1 gi|383319412|ref|YP_005380253.1| - 0.001 19.3 9.3 0.17 12.3 0.2 3.8 3 1 0 3 3 3 2 Prealbumin-like fold domain TTR-52 PF01060.23 gi|383319412|ref|YP_005380253.1| - 0.0025 18.5 0.2 0.74 10.6 0.0 3.2 3 0 0 3 3 3 1 Transthyretin-like family MG4 PF17789.1 gi|383319412|ref|YP_005380253.1| - 0.016 15.3 0.3 0.75 10.0 0.0 2.6 2 0 0 2 2 2 0 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|383319412|ref|YP_005380253.1| - 0.021 15.1 5.6 0.23 11.8 0.3 3.0 3 0 0 3 3 3 0 Invasin, domain 3 DUF5326 PF17260.2 gi|383319412|ref|YP_005380253.1| - 0.1 12.7 1.2 0.26 11.5 1.2 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5326) MreB_Mbl PF06723.13 gi|383319413|ref|YP_005380254.1| - 5.9e-09 35.2 0.0 7.6e-09 34.8 0.0 1.1 1 0 0 1 1 1 1 MreB/Mbl protein FtsA PF14450.6 gi|383319413|ref|YP_005380254.1| - 3.8e-07 30.5 0.0 7.9e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Cell division protein FtsA BcrAD_BadFG PF01869.20 gi|383319413|ref|YP_005380254.1| - 0.001 18.6 0.0 0.0027 17.2 0.0 1.7 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Actin PF00022.19 gi|383319413|ref|YP_005380254.1| - 0.0013 17.5 0.0 0.002 16.8 0.0 1.3 1 0 0 1 1 1 1 Actin PilM_2 PF11104.8 gi|383319413|ref|YP_005380254.1| - 0.0039 16.3 0.1 0.042 12.9 0.0 2.1 2 0 0 2 2 2 1 Type IV pilus assembly protein PilM; ATPase PF06745.13 gi|383319414|ref|YP_005380255.1| - 0.0011 18.4 0.3 0.0083 15.5 0.3 2.3 1 1 0 1 1 1 1 KaiC T2SSE PF00437.20 gi|383319416|ref|YP_005380257.1| - 6.6e-48 163.1 0.0 9.3e-48 162.6 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein T2SSF PF00482.23 gi|383319417|ref|YP_005380258.1| - 1.7e-33 115.2 7.4 5.7e-20 71.5 0.6 3.1 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F Pox_EPC_I2-L1 PF12575.8 gi|383319417|ref|YP_005380258.1| - 1.8 8.8 0.0 1.8 8.8 0.0 3.6 4 0 0 4 4 4 0 Poxvirus entry protein complex L1 and I2 Ac76 PF05814.11 gi|383319417|ref|YP_005380258.1| - 5 7.2 10.3 1.8 8.6 1.0 2.6 2 0 0 2 2 2 0 Orf76 (Ac76) Pilin_N PF07790.11 gi|383319418|ref|YP_005380259.1| - 1.1e-10 42.2 0.0 1.7e-10 41.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Trypan_PARP PF05887.11 gi|383319419|ref|YP_005380260.1| - 0.00095 19.1 0.9 0.0015 18.5 0.9 1.3 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) Pilin_N PF07790.11 gi|383319419|ref|YP_005380260.1| - 0.011 16.6 0.5 0.03 15.3 0.1 1.9 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal DEC-1_N PF04625.13 gi|383319419|ref|YP_005380260.1| - 0.33 9.9 9.1 0.49 9.4 9.1 1.2 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Invasin_D3 PF09134.10 gi|383319419|ref|YP_005380260.1| - 2.6 8.4 6.3 0.71 10.2 0.7 2.7 3 0 0 3 3 3 0 Invasin, domain 3 DUF378 PF04070.12 gi|383319420|ref|YP_005380261.1| - 2.3e-17 62.6 9.4 2.9e-17 62.3 9.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF378) DUF2108 PF09881.9 gi|383319420|ref|YP_005380261.1| - 0.022 14.7 3.3 0.025 14.6 2.7 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2108) ABC2_membrane_5 PF13346.6 gi|383319420|ref|YP_005380261.1| - 0.15 11.6 6.9 0.18 11.4 6.9 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein PhoR PF11808.8 gi|383319420|ref|YP_005380261.1| - 1.4 9.4 5.4 4.5 7.8 5.4 1.7 1 1 0 1 1 1 0 Phosphate regulon sensor protein PhoR AdoMet_Synthase PF01941.19 gi|383319422|ref|YP_005380263.1| - 4.1e-131 437.4 0.0 4.8e-131 437.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|383319422|ref|YP_005380263.1| - 0.0076 16.9 0.0 0.049 14.3 0.0 2.2 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, N-terminal domain Nup35_RRM_2 PF14605.6 gi|383319422|ref|YP_005380263.1| - 0.012 15.6 0.0 0.031 14.3 0.0 1.7 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif SMC_ScpB PF04079.16 gi|383319423|ref|YP_005380264.1| - 1.9e-38 131.6 0.1 2.6e-38 131.1 0.1 1.2 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB Glyco_hydro_57 PF03065.15 gi|383319423|ref|YP_005380264.1| - 0.022 14.0 0.1 0.064 12.5 0.0 1.6 2 0 0 2 2 2 0 Glycosyl hydrolase family 57 HTH_26 PF13443.6 gi|383319423|ref|YP_005380264.1| - 0.08 13.4 0.0 5.2 7.6 0.0 3.0 4 0 0 4 4 4 0 Cro/C1-type HTH DNA-binding domain SMC_ScpA PF02616.14 gi|383319424|ref|YP_005380265.1| - 1.1e-17 64.7 0.6 6.9e-10 39.2 0.0 2.1 1 1 1 2 2 2 2 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 gi|383319424|ref|YP_005380265.1| - 0.0035 16.6 0.0 0.011 15.0 0.0 2.0 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein SMC_N PF02463.19 gi|383319425|ref|YP_005380266.1| - 4.6e-75 251.8 0.0 9.8e-75 250.8 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|383319425|ref|YP_005380266.1| - 8.4e-34 116.4 0.0 3.6e-33 114.4 0.0 2.2 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|383319425|ref|YP_005380266.1| - 7.7e-16 59.2 5.9 7.7e-16 59.2 5.9 5.9 2 2 2 4 4 1 1 AAA domain AAA_21 PF13304.6 gi|383319425|ref|YP_005380266.1| - 1.5e-10 41.4 9.4 4.6e-06 26.7 0.1 3.8 4 0 0 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|383319425|ref|YP_005380266.1| - 7e-09 35.9 16.2 7e-09 35.9 16.2 4.7 2 2 0 2 2 1 1 AAA ATPase domain Spc7 PF08317.11 gi|383319425|ref|YP_005380266.1| - 1.1e-07 31.1 89.6 0.0002 20.4 10.6 7.3 2 2 5 7 7 7 4 Spc7 kinetochore protein AAA_29 PF13555.6 gi|383319425|ref|YP_005380266.1| - 7.1e-06 25.7 0.0 1.6e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Leu_zip PF15294.6 gi|383319425|ref|YP_005380266.1| - 0.00067 19.3 9.6 0.00067 19.3 9.6 5.9 2 2 4 6 6 5 1 Leucine zipper CENP-F_leu_zip PF10473.9 gi|383319425|ref|YP_005380266.1| - 0.0019 18.2 95.2 0.18 11.8 12.0 8.5 2 2 4 7 7 7 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GAS PF13851.6 gi|383319425|ref|YP_005380266.1| - 0.0054 16.1 21.8 0.0054 16.1 21.8 7.5 3 3 3 6 6 6 2 Growth-arrest specific micro-tubule binding HsbA PF12296.8 gi|383319425|ref|YP_005380266.1| - 0.0072 16.7 0.7 7 7.1 0.0 4.3 3 2 2 5 5 5 1 Hydrophobic surface binding protein A DUF4201 PF13870.6 gi|383319425|ref|YP_005380266.1| - 0.071 12.8 70.7 0.015 15.0 7.0 8.4 3 3 4 8 8 8 0 Domain of unknown function (DUF4201) DUF3584 PF12128.8 gi|383319425|ref|YP_005380266.1| - 0.53 7.7 82.9 0.91 7.0 19.5 4.1 2 2 1 3 3 3 0 Protein of unknown function (DUF3584) Imm7 PF15585.6 gi|383319425|ref|YP_005380266.1| - 0.68 10.2 3.7 3 8.1 0.1 4.1 4 1 1 5 5 4 0 Immunity protein 7 DUF1664 PF07889.12 gi|383319425|ref|YP_005380266.1| - 0.77 9.8 57.0 0.16 12.0 1.4 9.3 5 3 5 10 10 10 0 Protein of unknown function (DUF1664) GIT_CC PF16559.5 gi|383319425|ref|YP_005380266.1| - 1.1 9.2 5.0 38 4.2 0.8 3.9 2 1 1 3 3 3 0 GIT coiled-coil Rho guanine nucleotide exchange factor Lip_prot_lig_C PF10437.9 gi|383319425|ref|YP_005380266.1| - 1.5 8.8 5.0 5.9 6.9 0.1 4.3 3 0 0 3 3 3 0 Bacterial lipoate protein ligase C-terminus ATG16 PF08614.11 gi|383319425|ref|YP_005380266.1| - 1.9 8.7 90.7 0.13 12.5 11.9 7.3 3 3 3 6 6 6 0 Autophagy protein 16 (ATG16) EzrA PF06160.12 gi|383319425|ref|YP_005380266.1| - 3.8 5.6 70.4 0.052 11.7 4.1 5.7 2 2 3 5 5 5 0 Septation ring formation regulator, EzrA NPV_P10 PF05531.12 gi|383319425|ref|YP_005380266.1| - 4.2 7.9 25.4 23 5.6 0.0 8.2 7 1 0 7 7 7 0 Nucleopolyhedrovirus P10 protein KASH_CCD PF14662.6 gi|383319425|ref|YP_005380266.1| - 5.7 6.7 81.9 0.092 12.6 13.8 6.1 2 2 4 6 6 4 0 Coiled-coil region of CCDC155 or KASH DUF948 PF06103.11 gi|383319425|ref|YP_005380266.1| - 8 6.8 17.3 14 6.0 0.9 7.1 6 2 0 6 6 6 0 Bacterial protein of unknown function (DUF948) AAA_13 PF13166.6 gi|383319425|ref|YP_005380266.1| - 10 4.6 78.3 0.067 11.8 13.3 5.5 3 2 1 5 5 5 0 AAA domain Spc29 PF17082.5 gi|383319426|ref|YP_005380267.1| - 0.0016 18.4 1.0 0.0017 18.2 0.5 1.4 1 1 0 1 1 1 1 Spindle Pole Component 29 TMF_DNA_bd PF12329.8 gi|383319426|ref|YP_005380267.1| - 0.0027 17.7 9.7 0.014 15.4 9.7 1.9 1 1 0 1 1 1 1 TATA element modulatory factor 1 DNA binding HMMR_N PF15905.5 gi|383319426|ref|YP_005380267.1| - 0.0056 16.2 4.3 0.0069 15.9 4.3 1.1 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Seryl_tRNA_N PF02403.22 gi|383319426|ref|YP_005380267.1| - 0.0067 16.7 1.7 0.012 15.9 1.7 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Lebercilin PF15619.6 gi|383319426|ref|YP_005380267.1| - 0.0068 16.1 6.7 0.082 12.6 5.7 2.0 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease FlaC_arch PF05377.11 gi|383319426|ref|YP_005380267.1| - 0.01 16.2 7.5 0.16 12.4 1.3 2.2 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF16 PF01519.16 gi|383319426|ref|YP_005380267.1| - 0.017 15.6 3.2 0.1 13.1 3.2 2.0 1 1 0 1 1 1 0 Protein of unknown function DUF16 GAS PF13851.6 gi|383319426|ref|YP_005380267.1| - 0.02 14.3 2.2 0.028 13.7 2.2 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding TMF_TATA_bd PF12325.8 gi|383319426|ref|YP_005380267.1| - 0.025 14.8 4.8 0.041 14.1 4.8 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Tropomyosin_1 PF12718.7 gi|383319426|ref|YP_005380267.1| - 0.036 14.2 8.2 0.26 11.4 1.5 2.1 1 1 1 2 2 2 0 Tropomyosin like ATG16 PF08614.11 gi|383319426|ref|YP_005380267.1| - 0.038 14.2 2.9 0.054 13.7 2.9 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) MAD PF05557.13 gi|383319426|ref|YP_005380267.1| - 0.064 11.6 2.9 0.079 11.3 2.9 1.0 1 0 0 1 1 1 0 Mitotic checkpoint protein DUF4164 PF13747.6 gi|383319426|ref|YP_005380267.1| - 0.1 12.9 3.8 0.21 11.9 3.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) Csm1_N PF18504.1 gi|383319426|ref|YP_005380267.1| - 0.11 12.9 5.6 0.66 10.4 1.1 2.4 1 1 1 2 2 2 0 Csm1 N-terminal domain NPV_P10 PF05531.12 gi|383319426|ref|YP_005380267.1| - 0.11 13.0 0.2 0.35 11.4 0.0 1.8 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF641 PF04859.12 gi|383319426|ref|YP_005380267.1| - 0.13 12.6 5.1 0.14 12.5 0.5 2.1 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) USP8_interact PF08941.10 gi|383319426|ref|YP_005380267.1| - 0.14 12.0 0.0 0.17 11.7 0.0 1.1 1 0 0 1 1 1 0 USP8 interacting DUF745 PF05335.13 gi|383319426|ref|YP_005380267.1| - 0.2 11.4 2.0 3.1 7.5 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF745) Cep57_CLD_2 PF14197.6 gi|383319426|ref|YP_005380267.1| - 0.2 11.8 7.0 2.1 8.5 0.6 2.5 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 ZapB PF06005.12 gi|383319426|ref|YP_005380267.1| - 0.57 10.7 8.0 5.1 7.6 8.0 2.1 1 1 0 1 1 1 0 Cell division protein ZapB XhlA PF10779.9 gi|383319426|ref|YP_005380267.1| - 0.92 9.8 3.5 11 6.3 0.2 2.3 2 0 0 2 2 2 0 Haemolysin XhlA PKcGMP_CC PF16808.5 gi|383319426|ref|YP_005380267.1| - 1.2 9.1 10.8 0.11 12.4 5.8 1.9 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Prefoldin_2 PF01920.20 gi|383319426|ref|YP_005380267.1| - 2.3 8.2 7.7 6.7 6.7 0.9 2.2 1 1 1 2 2 2 0 Prefoldin subunit DUF3160 PF11369.8 gi|383319427|ref|YP_005380268.1| - 1.8e-234 779.9 0.9 2.1e-234 779.7 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) TAT_signal PF10518.9 gi|383319427|ref|YP_005380268.1| - 0.056 13.3 0.3 0.13 12.1 0.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence IF-2B PF01008.17 gi|383319428|ref|YP_005380269.1| - 5e-84 281.8 0.0 5.8e-84 281.6 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Radical_SAM PF04055.21 gi|383319429|ref|YP_005380270.1| - 1.3e-15 58.1 0.1 2.7e-14 53.9 0.0 2.2 1 1 1 2 2 2 2 Radical SAM superfamily Radical_SAM PF04055.21 gi|383319430|ref|YP_005380271.1| - 9.8e-18 65.1 0.0 1.6e-17 64.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Peptidase_C71 PF12386.8 gi|383319430|ref|YP_005380271.1| - 0.025 14.2 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 Pseudomurein endo-isopeptidase Pei Radical_SAM PF04055.21 gi|383319431|ref|YP_005380272.1| - 5.7e-17 62.6 0.6 1.1e-16 61.6 0.2 1.7 2 0 0 2 2 2 1 Radical SAM superfamily SinI PF08671.10 gi|383319431|ref|YP_005380272.1| - 0.023 14.5 0.8 0.84 9.5 0.1 3.2 3 0 0 3 3 3 0 Anti-repressor SinI TSNAXIP1_N PF15739.5 gi|383319431|ref|YP_005380272.1| - 0.19 12.1 0.1 0.83 10.0 0.1 1.9 2 0 0 2 2 2 0 Translin-associated factor X-interacting N-terminus FrhB_FdhB_C PF04432.13 gi|383319432|ref|YP_005380273.1| - 1.7e-34 118.9 0.0 2.4e-34 118.4 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|383319432|ref|YP_005380273.1| - 1.3e-24 86.2 0.1 1.9e-24 85.6 0.1 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Oxidored_q6 PF01058.22 gi|383319433|ref|YP_005380274.1| - 7.7e-25 87.2 0.0 7.7e-25 87.2 0.0 1.9 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|383319433|ref|YP_005380274.1| - 5.7e-14 51.3 16.4 2.3e-08 33.5 4.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383319433|ref|YP_005380274.1| - 1e-08 34.9 18.0 1.5e-05 24.9 3.8 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383319433|ref|YP_005380274.1| - 1.2e-08 35.4 12.3 1.2e-08 35.4 12.3 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383319433|ref|YP_005380274.1| - 1.8e-08 34.4 11.4 1.8e-08 34.4 11.4 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383319433|ref|YP_005380274.1| - 8.1e-08 33.1 9.7 0.00013 22.8 2.0 2.8 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|383319433|ref|YP_005380274.1| - 9e-08 32.1 10.3 2.2e-07 30.9 7.9 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383319433|ref|YP_005380274.1| - 2.3e-07 30.9 11.9 2.3e-07 30.9 11.9 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383319433|ref|YP_005380274.1| - 5e-07 29.4 17.5 0.00021 21.2 1.9 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|383319433|ref|YP_005380274.1| - 5.4e-07 29.6 17.1 0.00077 19.8 2.2 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|383319433|ref|YP_005380274.1| - 0.00038 20.9 12.3 0.068 13.7 2.5 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|383319433|ref|YP_005380274.1| - 0.0085 16.5 19.8 0.038 14.4 3.3 2.8 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383319433|ref|YP_005380274.1| - 0.012 16.3 11.5 0.034 14.9 1.1 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|383319433|ref|YP_005380274.1| - 0.023 15.2 20.8 0.083 13.5 2.6 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|383319433|ref|YP_005380274.1| - 6.3 7.7 21.6 0.29 12.0 4.2 2.9 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|383319433|ref|YP_005380274.1| - 9 6.5 10.2 69 3.7 10.2 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain NiFeSe_Hases PF00374.19 gi|383319434|ref|YP_005380275.1| - 3.1e-26 92.4 2.0 5.4e-14 52.0 0.0 4.8 4 1 0 4 4 4 4 Nickel-dependent hydrogenase SnoaL PF07366.12 gi|383319434|ref|YP_005380275.1| - 0.085 12.7 0.0 37 4.1 0.0 3.3 3 1 0 3 3 3 0 SnoaL-like polyketide cyclase OppC_N PF12911.7 gi|383319435|ref|YP_005380276.1| - 0.047 13.7 1.1 0.084 12.9 1.1 1.4 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DUF2393 PF09624.10 gi|383319435|ref|YP_005380276.1| - 0.2 11.7 0.0 0.2 11.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) GHMP_kinases_N PF00288.26 gi|383319436|ref|YP_005380277.1| - 2.4e-11 43.7 2.3 5.2e-11 42.6 2.3 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|383319436|ref|YP_005380277.1| - 5.5e-10 39.5 0.1 1.2e-09 38.4 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal PhosphMutase PF10143.9 gi|383319437|ref|YP_005380278.1| - 2.6e-54 183.7 0.0 3.4e-54 183.3 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|383319437|ref|YP_005380278.1| - 1.7e-34 119.3 0.0 2e-34 119.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|383319437|ref|YP_005380278.1| - 0.14 11.7 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase CarboxypepD_reg PF13620.6 gi|383319438|ref|YP_005380279.1| - 2.7e-15 56.4 28.5 8.8e-07 29.1 0.7 6.9 5 2 2 7 7 7 4 Carboxypeptidase regulatory-like domain PGF-CTERM PF18204.1 gi|383319438|ref|YP_005380279.1| - 1.7e-09 37.3 3.1 1.7e-09 37.3 3.1 1.8 2 0 0 2 2 2 1 PGF-CTERM motif Big_1 PF02369.16 gi|383319438|ref|YP_005380279.1| - 2.2e-08 34.0 36.1 6.6e-05 22.8 1.8 5.8 5 2 0 5 5 5 3 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|383319438|ref|YP_005380279.1| - 4.7e-05 23.6 24.1 0.00012 22.3 0.4 5.0 4 2 1 5 5 5 2 Invasin, domain 3 Glyco_hydro2_C5 PF18565.1 gi|383319438|ref|YP_005380279.1| - 0.00015 21.6 2.8 0.022 14.6 0.0 4.0 5 0 0 5 5 5 1 Glycoside hydrolase family 2 C-terminal domain 5 CarbopepD_reg_2 PF13715.6 gi|383319438|ref|YP_005380279.1| - 0.0078 16.2 0.9 0.0078 16.2 0.9 3.2 3 0 0 3 3 3 1 CarboxypepD_reg-like domain CarboxypepD_reg PF13620.6 gi|383319439|ref|YP_005380280.1| - 5.4e-22 77.9 3.6 2e-07 31.2 0.2 5.4 5 0 0 5 5 5 3 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|383319439|ref|YP_005380280.1| - 4.8e-19 68.0 1.6 1.3e-08 34.6 0.0 3.2 3 0 0 3 3 3 2 PEGA domain CarbopepD_reg_2 PF13715.6 gi|383319439|ref|YP_005380280.1| - 4.9e-08 32.9 0.5 0.62 10.1 0.0 5.0 5 0 0 5 5 5 3 CarboxypepD_reg-like domain SdrD_B PF17210.3 gi|383319439|ref|YP_005380280.1| - 0.00029 21.0 0.5 0.0099 16.1 0.0 3.0 3 0 0 3 3 3 1 SdrD B-like domain Big_1 PF02369.16 gi|383319439|ref|YP_005380280.1| - 0.0028 17.6 4.8 0.33 11.0 0.3 3.6 3 1 0 3 3 3 2 Bacterial Ig-like domain (group 1) Dioxygenase_C PF00775.21 gi|383319439|ref|YP_005380280.1| - 0.0056 16.1 0.0 0.49 9.8 0.0 3.1 3 1 0 3 3 3 1 Dioxygenase bMG3 PF11974.8 gi|383319439|ref|YP_005380280.1| - 0.041 13.9 0.0 3 7.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial alpha-2-macroglobulin MG3 domain Invasin_D3 PF09134.10 gi|383319439|ref|YP_005380280.1| - 0.11 12.8 4.4 0.92 9.9 0.1 3.2 4 0 0 4 4 4 0 Invasin, domain 3 ABC_tran PF00005.27 gi|383319440|ref|YP_005380281.1| - 4e-29 101.9 0.0 5.5e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383319440|ref|YP_005380281.1| - 6.4e-14 52.5 0.0 5.2e-07 29.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|383319440|ref|YP_005380281.1| - 0.0012 18.5 0.1 0.0028 17.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|383319440|ref|YP_005380281.1| - 0.0077 16.6 0.3 0.019 15.4 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|383319440|ref|YP_005380281.1| - 0.014 14.8 0.0 3.7 6.9 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|383319440|ref|YP_005380281.1| - 0.022 15.2 0.0 0.13 12.7 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.14 gi|383319440|ref|YP_005380281.1| - 0.022 14.7 0.4 0.46 10.4 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.6 gi|383319440|ref|YP_005380281.1| - 0.051 12.2 0.0 1.2 7.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|383319440|ref|YP_005380281.1| - 0.056 13.9 0.1 0.087 13.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|383319440|ref|YP_005380281.1| - 0.058 12.8 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|383319440|ref|YP_005380281.1| - 0.083 12.6 0.0 0.31 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|383319440|ref|YP_005380281.1| - 0.083 12.5 0.2 0.19 11.3 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|383319440|ref|YP_005380281.1| - 0.12 12.5 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|383319440|ref|YP_005380281.1| - 0.15 11.0 0.6 0.3 10.0 0.2 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|383319440|ref|YP_005380281.1| - 0.15 12.0 0.1 0.34 10.8 0.1 1.5 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|383319440|ref|YP_005380281.1| - 0.16 12.0 0.1 0.3 11.1 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|383319440|ref|YP_005380281.1| - 0.18 12.1 0.0 0.32 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|383319440|ref|YP_005380281.1| - 0.19 11.6 0.2 0.63 9.9 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase ABC2_membrane_2 PF12679.7 gi|383319441|ref|YP_005380282.1| - 5.8e-10 38.9 15.9 5.8e-10 38.9 15.9 2.1 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319441|ref|YP_005380282.1| - 0.00021 21.3 11.6 0.00021 21.3 11.6 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein AAA_14 PF13173.6 gi|383319442|ref|YP_005380283.1| - 3.3e-36 124.2 0.0 8.5e-36 122.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|383319442|ref|YP_005380283.1| - 1.4e-13 51.1 0.0 2.4e-13 50.3 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|383319442|ref|YP_005380283.1| - 5.5e-05 23.2 0.4 0.00091 19.2 0.0 2.5 2 1 0 3 3 3 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|383319442|ref|YP_005380283.1| - 0.00037 20.9 0.0 0.00066 20.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|383319442|ref|YP_005380283.1| - 0.0019 18.7 0.0 0.004 17.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|383319442|ref|YP_005380283.1| - 0.0035 17.9 0.0 0.038 14.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|383319442|ref|YP_005380283.1| - 0.0045 16.8 0.0 0.012 15.3 0.0 1.7 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.22 gi|383319442|ref|YP_005380283.1| - 0.023 13.9 0.0 0.036 13.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Rad17 PF03215.15 gi|383319442|ref|YP_005380283.1| - 0.035 14.0 0.0 0.069 13.1 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain GBP PF02263.19 gi|383319442|ref|YP_005380283.1| - 0.036 13.3 0.1 0.61 9.3 0.0 2.1 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain Zeta_toxin PF06414.12 gi|383319442|ref|YP_005380283.1| - 0.081 12.2 0.0 0.57 9.4 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin DUF5643 PF18705.1 gi|383319443|ref|YP_005380284.1| - 0.024 14.6 0.1 0.039 13.9 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5643) MFS_1 PF07690.16 gi|383319444|ref|YP_005380285.1| - 5.4e-63 213.0 73.3 3.4e-49 167.7 47.5 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|383319444|ref|YP_005380285.1| - 3.3e-08 32.5 37.2 2.6e-06 26.3 10.6 2.9 2 1 1 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|383319444|ref|YP_005380285.1| - 9.5e-06 24.7 22.6 0.011 14.6 8.3 3.3 2 1 0 2 2 2 2 MFS_1 like family PhoLip_ATPase_C PF16212.5 gi|383319444|ref|YP_005380285.1| - 8.5 6.0 20.1 3.6 7.3 1.5 3.2 3 0 0 3 3 3 0 Phospholipid-translocating P-type ATPase C-terminal DHO_dh PF01180.21 gi|383319445|ref|YP_005380286.1| - 3.1e-65 220.3 0.2 3.6e-65 220.1 0.2 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|383319445|ref|YP_005380286.1| - 5.4e-10 38.8 0.1 8e-05 21.9 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|383319445|ref|YP_005380286.1| - 5.7e-06 25.9 3.0 1.3e-05 24.8 3.0 1.6 1 0 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|383319445|ref|YP_005380286.1| - 9e-05 22.0 0.7 0.00032 20.2 0.1 2.2 2 1 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.12 gi|383319445|ref|YP_005380286.1| - 0.00072 18.8 0.2 0.002 17.4 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF561) IMPDH PF00478.25 gi|383319445|ref|YP_005380286.1| - 0.0017 17.5 3.1 0.0041 16.2 3.5 1.5 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|383319445|ref|YP_005380286.1| - 0.18 10.8 1.6 0.21 10.6 0.2 1.7 2 1 1 3 3 3 0 FMN-dependent dehydrogenase G3P_antiterm PF04309.12 gi|383319445|ref|YP_005380286.1| - 0.71 9.3 2.2 1.3 8.4 0.0 2.5 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator DHODB_Fe-S_bind PF10418.9 gi|383319446|ref|YP_005380287.1| - 1.2e-12 47.4 6.0 2.1e-12 46.6 6.0 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|383319446|ref|YP_005380287.1| - 2.1e-05 25.1 0.2 8.7e-05 23.1 0.2 2.0 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|383319446|ref|YP_005380287.1| - 0.038 14.3 0.0 0.25 11.7 0.0 2.1 1 1 0 1 1 1 0 Oxidoreductase FAD-binding domain Fer2_3 PF13085.6 gi|383319446|ref|YP_005380287.1| - 0.16 12.0 0.8 0.25 11.3 0.8 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain NAD_binding_6 PF08030.12 gi|383319446|ref|YP_005380287.1| - 0.17 12.0 0.1 7.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Ferric reductase NAD binding domain FAA_hydrolase PF01557.18 gi|383319447|ref|YP_005380288.1| - 8.6e-69 231.5 0.0 1e-68 231.3 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF3421 PF11901.8 gi|383319447|ref|YP_005380288.1| - 0.14 12.1 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3421) DUF2437 PF10370.9 gi|383319447|ref|YP_005380288.1| - 0.16 12.8 0.0 0.44 11.5 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF2437) TPR_11 PF13414.6 gi|383319448|ref|YP_005380289.1| - 3.8e-262 845.8 90.8 1.6e-12 46.9 1.4 27.3 5 5 22 27 27 27 27 TPR repeat TPR_1 PF00515.28 gi|383319448|ref|YP_005380289.1| - 8.1e-176 563.5 96.6 9.4e-09 34.7 2.0 28.0 28 0 0 28 28 28 25 Tetratricopeptide repeat TPR_2 PF07719.17 gi|383319448|ref|YP_005380289.1| - 1.5e-165 524.4 95.5 5.8e-08 32.3 1.6 27.6 28 0 0 28 28 28 25 Tetratricopeptide repeat TPR_17 PF13431.6 gi|383319448|ref|YP_005380289.1| - 6.9e-136 433.3 63.4 1e-05 25.5 0.3 27.5 28 0 0 28 28 27 25 Tetratricopeptide repeat TPR_8 PF13181.6 gi|383319448|ref|YP_005380289.1| - 1.6e-132 420.9 65.4 1.8e-06 27.7 0.9 27.6 28 0 0 28 28 28 24 Tetratricopeptide repeat TPR_16 PF13432.6 gi|383319448|ref|YP_005380289.1| - 1.7e-131 428.7 76.4 4e-10 40.2 0.2 20.6 2 2 20 24 24 24 24 Tetratricopeptide repeat TPR_14 PF13428.6 gi|383319448|ref|YP_005380289.1| - 2.4e-96 308.1 73.8 1e-05 25.9 0.0 25.5 3 3 23 26 26 26 24 Tetratricopeptide repeat TPR_12 PF13424.6 gi|383319448|ref|YP_005380289.1| - 9.9e-79 259.7 68.4 6.9e-09 35.9 0.1 16.9 4 4 14 18 18 18 18 Tetratricopeptide repeat TPR_19 PF14559.6 gi|383319448|ref|YP_005380289.1| - 7.3e-76 250.6 77.1 3.8e-07 30.5 1.2 17.4 4 3 13 20 20 20 19 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383319448|ref|YP_005380289.1| - 4e-54 176.8 41.7 0.038 14.0 0.1 24.9 25 0 0 25 25 25 10 Tetratricopeptide repeat TPR_6 PF13174.6 gi|383319448|ref|YP_005380289.1| - 2e-53 175.5 49.4 0.018 15.6 0.3 25.7 27 0 0 27 27 26 10 Tetratricopeptide repeat TPR_20 PF14561.6 gi|383319448|ref|YP_005380289.1| - 5.4e-38 129.2 49.0 0.0001 22.5 0.2 17.3 3 3 15 19 19 19 14 Tetratricopeptide repeat TPR_9 PF13371.6 gi|383319448|ref|YP_005380289.1| - 6.9e-33 112.6 53.8 0.00097 19.2 0.6 14.9 10 3 5 16 16 16 11 Tetratricopeptide repeat TPR_10 PF13374.6 gi|383319448|ref|YP_005380289.1| - 1.6e-29 100.9 85.6 0.013 15.4 0.1 23.7 26 0 0 26 26 25 7 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|383319448|ref|YP_005380289.1| - 1.6e-27 96.5 12.6 1 9.1 0.1 18.6 1 1 20 21 21 21 5 Plant specific mitochondrial import receptor subunit TOM20 BTAD PF03704.17 gi|383319448|ref|YP_005380289.1| - 1.2e-25 90.6 31.4 0.085 13.3 0.3 13.0 1 1 14 15 15 15 8 Bacterial transcriptional activator domain ANAPC3 PF12895.7 gi|383319448|ref|YP_005380289.1| - 1.1e-23 83.2 23.8 0.0093 16.2 0.1 10.8 5 3 7 13 13 13 8 Anaphase-promoting complex, cyclosome, subunit 3 SHNi-TPR PF10516.9 gi|383319448|ref|YP_005380289.1| - 7.2e-21 73.4 20.2 0.48 9.9 0.0 17.4 20 0 0 20 20 20 2 SHNi-TPR TPR_15 PF13429.6 gi|383319448|ref|YP_005380289.1| - 3.1e-18 66.0 24.8 0.046 12.9 0.4 13.4 1 1 10 14 14 14 4 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|383319448|ref|YP_005380289.1| - 4e-16 59.3 0.0 0.24 10.7 0.0 9.1 3 3 5 9 9 9 3 MalT-like TPR region TPR_4 PF07721.14 gi|383319448|ref|YP_005380289.1| - 1.5e-14 53.0 23.3 5 8.0 0.0 17.9 21 0 0 21 21 16 0 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 gi|383319448|ref|YP_005380289.1| - 1.8e-10 40.5 5.3 1.5 8.5 0.0 8.9 5 3 8 13 13 11 1 Bacterial type III secretion protein (HrpB1_HrpK) DUF3856 PF12968.7 gi|383319448|ref|YP_005380289.1| - 1.1e-06 28.8 17.6 34 4.5 0.1 14.6 8 7 6 17 17 16 0 Domain of Unknown Function (DUF3856) EST1_DNA_bind PF10373.9 gi|383319448|ref|YP_005380289.1| - 1.5e-06 28.0 2.6 1.1 8.7 0.1 5.3 4 0 0 4 4 4 2 Est1 DNA/RNA binding domain DUF5514 PF17633.2 gi|383319448|ref|YP_005380289.1| - 4.3e-05 23.8 2.6 9.8 6.4 0.0 7.1 8 1 2 10 10 7 0 Family of unknown function (DUF5514) DUF627 PF04781.12 gi|383319448|ref|YP_005380289.1| - 0.00018 21.5 4.2 76 3.4 0.0 8.4 8 3 4 12 12 10 0 Protein of unknown function (DUF627) Coatomer_E PF04733.14 gi|383319448|ref|YP_005380289.1| - 0.00052 19.5 5.6 2.9 7.2 0.0 6.5 6 2 2 8 8 8 1 Coatomer epsilon subunit ANAPC5 PF12862.7 gi|383319448|ref|YP_005380289.1| - 0.0034 17.4 16.1 12 6.1 0.1 9.2 6 4 3 9 9 8 0 Anaphase-promoting complex subunit 5 PMEI PF04043.15 gi|383319448|ref|YP_005380289.1| - 0.01 16.2 1.8 14 6.0 0.0 5.7 4 3 1 5 5 5 0 Plant invertase/pectin methylesterase inhibitor LysR_substrate PF03466.20 gi|383319448|ref|YP_005380289.1| - 0.018 14.4 0.0 38 3.6 0.0 5.3 6 1 2 8 8 7 0 LysR substrate binding domain OSCP PF00213.18 gi|383319448|ref|YP_005380289.1| - 0.036 14.2 2.1 42 4.2 0.3 4.7 4 1 1 5 5 5 0 ATP synthase delta (OSCP) subunit Rac1 PF09632.10 gi|383319448|ref|YP_005380289.1| - 0.083 12.0 0.3 65 2.6 0.0 4.4 3 1 2 5 5 4 0 Rac1-binding domain NARP1 PF12569.8 gi|383319448|ref|YP_005380289.1| - 0.096 11.6 24.3 5.1 5.9 0.1 7.2 3 3 3 7 7 7 0 NMDA receptor-regulated protein 1 DHO_dh PF01180.21 gi|383319448|ref|YP_005380289.1| - 0.12 11.6 0.5 1.7e+02 1.2 0.0 5.3 4 3 2 7 7 7 0 Dihydroorotate dehydrogenase ThiD2 PF17792.1 gi|383319448|ref|YP_005380289.1| - 0.12 12.8 0.5 5.3 7.5 0.0 4.0 5 0 0 5 5 2 0 ThiD2 family FERM_f0 PF16511.5 gi|383319448|ref|YP_005380289.1| - 0.13 12.5 0.0 40 4.6 0.0 4.5 5 0 0 5 5 2 0 N-terminal or F0 domain of Talin-head FERM CODH_A_N PF18537.1 gi|383319448|ref|YP_005380289.1| - 0.17 11.9 0.6 24 5.0 0.0 4.6 4 1 1 5 5 4 0 Carbon monoxide dehydrogenase subunit alpha N-terminal domain TetR_C_15 PF17918.1 gi|383319448|ref|YP_005380289.1| - 0.63 10.8 9.2 91 3.9 0.1 6.2 6 1 1 7 7 5 0 Tetracyclin repressor-like, C-terminal domain TPR_3 PF07720.12 gi|383319448|ref|YP_005380289.1| - 0.7 9.9 12.2 68 3.6 0.1 7.9 9 0 0 9 9 6 0 Tetratricopeptide repeat Turandot PF07240.11 gi|383319448|ref|YP_005380289.1| - 1.8 8.6 6.0 1.7e+02 2.3 0.0 6.4 8 1 0 8 8 4 0 Stress-inducible humoral factor Turandot DUF3800 PF12686.7 gi|383319448|ref|YP_005380289.1| - 4.7 7.9 7.0 2.8e+02 2.1 0.0 4.3 2 2 0 2 2 2 0 Protein of unknown function (DUF3800) Fis1_TPR_C PF14853.6 gi|383319448|ref|YP_005380289.1| - 6.8 6.8 39.2 8.4 6.6 0.0 11.3 11 2 1 12 12 11 0 Fis1 C-terminal tetratricopeptide repeat tRNA-synt_1 PF00133.22 gi|383319451|ref|YP_005380292.1| - 3.8e-122 408.5 0.0 8.8e-121 404.0 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|383319451|ref|YP_005380292.1| - 8.6e-36 123.2 0.2 1.4e-35 122.5 0.2 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|383319451|ref|YP_005380292.1| - 6.6e-21 74.5 0.1 2.4e-12 46.3 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|383319451|ref|YP_005380292.1| - 7.7e-06 25.5 0.0 1.7e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|383319451|ref|YP_005380292.1| - 0.0035 16.7 0.0 0.56 9.5 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain zf-RRN7 PF11781.8 gi|383319451|ref|YP_005380292.1| - 0.022 14.4 0.5 4.2 7.1 0.2 2.6 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 tRNA-synt_1f PF01921.18 gi|383319451|ref|YP_005380292.1| - 0.036 13.0 0.0 3.1 6.6 0.0 2.6 2 0 0 2 2 2 0 tRNA synthetases class I (K) SusD-like_3 PF14322.6 gi|383319451|ref|YP_005380292.1| - 0.048 14.0 0.0 0.2 11.9 0.0 2.0 2 0 0 2 2 2 0 Starch-binding associating with outer membrane Zn-ribbon_8 PF09723.10 gi|383319451|ref|YP_005380292.1| - 0.52 10.5 2.6 1.9 8.7 0.5 2.7 2 0 0 2 2 2 0 Zinc ribbon domain DUF5518 PF17647.1 gi|383319452|ref|YP_005380293.1| - 3.1e-05 24.1 19.7 3.1e-05 24.1 19.7 2.3 2 0 0 2 2 2 2 Family of unknown function (DUF5518) Gly-zipper_OmpA PF13436.6 gi|383319452|ref|YP_005380293.1| - 0.02 14.6 4.1 2 8.3 1.1 2.9 2 0 0 2 2 2 0 Glycine-zipper domain Gly-zipper_YMGG PF13441.6 gi|383319452|ref|YP_005380293.1| - 0.14 11.9 6.3 0.36 10.6 0.1 2.9 2 1 0 2 2 2 0 YMGG-like Gly-zipper Tim17 PF02466.19 gi|383319452|ref|YP_005380293.1| - 1.3 9.4 13.2 0.35 11.2 1.3 3.3 2 1 0 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family CarboxypepD_reg PF13620.6 gi|383319453|ref|YP_005380294.1| - 8.9e-06 25.9 1.4 0.037 14.3 0.3 2.5 2 1 0 2 2 2 2 Carboxypeptidase regulatory-like domain AglB_L1 PF18079.1 gi|383319453|ref|YP_005380294.1| - 0.18 12.1 2.3 1.5 9.2 0.3 2.7 2 2 0 2 2 2 0 Archaeal glycosylation protein B long peripheral domain DNA_primase_S PF01896.19 gi|383319454|ref|YP_005380295.1| - 1.7e-30 106.4 0.0 3.9e-30 105.2 0.0 1.6 1 1 0 1 1 1 1 DNA primase small subunit Sld5 PF05916.11 gi|383319455|ref|YP_005380296.1| - 0.00044 20.7 0.6 0.00067 20.1 0.6 1.3 1 0 0 1 1 1 1 GINS complex protein SepF PF04472.12 gi|383319455|ref|YP_005380296.1| - 0.15 12.3 0.5 2.1 8.7 0.2 2.4 1 1 1 2 2 2 0 Cell division protein SepF Ribosomal_L44 PF00935.19 gi|383319456|ref|YP_005380297.1| - 6.3e-25 87.5 4.2 7.9e-25 87.1 4.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|383319456|ref|YP_005380297.1| - 0.015 14.7 0.9 0.39 10.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|383319456|ref|YP_005380297.1| - 0.03 15.1 0.2 0.043 14.6 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon family DZR PF12773.7 gi|383319456|ref|YP_005380297.1| - 0.054 13.5 0.3 0.11 12.6 0.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-primase PF09329.11 gi|383319456|ref|YP_005380297.1| - 0.063 13.1 0.6 0.12 12.2 0.6 1.5 1 0 0 1 1 1 0 Primase zinc finger Ribosomal_L33 PF00471.20 gi|383319456|ref|YP_005380297.1| - 0.076 13.5 7.4 0.31 11.5 3.3 2.4 2 0 0 2 2 2 0 Ribosomal protein L33 Cys_rich_KTR PF14205.6 gi|383319456|ref|YP_005380297.1| - 0.076 12.8 2.8 0.91 9.4 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich KTR zf-LITAF-like PF10601.9 gi|383319456|ref|YP_005380297.1| - 0.15 12.4 2.3 0.56 10.5 0.2 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Ribosomal_S27e PF01667.17 gi|383319457|ref|YP_005380298.1| - 3.4e-24 84.3 1.1 3.7e-24 84.2 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn_Tnp_IS91 PF14319.6 gi|383319457|ref|YP_005380298.1| - 0.015 15.3 0.2 0.015 15.3 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain TF_Zn_Ribbon PF08271.12 gi|383319457|ref|YP_005380298.1| - 0.016 14.7 0.6 0.018 14.5 0.6 1.1 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|383319457|ref|YP_005380298.1| - 0.019 15.0 0.4 0.022 14.8 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|383319457|ref|YP_005380298.1| - 0.024 14.5 0.6 0.032 14.1 0.6 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF3797 PF12677.7 gi|383319457|ref|YP_005380298.1| - 0.031 14.2 1.4 0.8 9.6 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_4 PF13717.6 gi|383319457|ref|YP_005380298.1| - 0.039 13.9 1.6 2.6 8.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Herpes_BTRF1 PF04682.12 gi|383319457|ref|YP_005380298.1| - 0.048 13.0 0.0 0.05 12.9 0.0 1.0 1 0 0 1 1 1 0 Herpesvirus BTRF1 protein conserved region zf-C2H2_3 PF13878.6 gi|383319457|ref|YP_005380298.1| - 0.12 12.3 1.2 9.4 6.2 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_6 PF14599.6 gi|383319457|ref|YP_005380298.1| - 0.27 11.3 4.0 0.78 9.8 4.1 1.7 1 1 0 1 1 1 0 Zinc-ribbon zinc_ribbon_13 PF09855.9 gi|383319457|ref|YP_005380298.1| - 0.45 10.7 4.2 2.9 8.1 4.2 2.1 1 1 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) EIF_2_alpha PF07541.12 gi|383319458|ref|YP_005380299.1| - 3e-24 85.3 0.0 5.4e-24 84.5 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|383319458|ref|YP_005380299.1| - 1.4e-12 47.7 0.2 3.3e-12 46.6 0.2 1.6 1 0 0 1 1 1 1 S1 RNA binding domain S1_2 PF13509.6 gi|383319458|ref|YP_005380299.1| - 0.1 12.7 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 S1 domain Nop10p PF04135.12 gi|383319459|ref|YP_005380300.1| - 2.5e-21 75.4 2.9 2.7e-21 75.3 2.9 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-tcix PF14952.6 gi|383319459|ref|YP_005380300.1| - 6.7e-05 22.4 5.0 0.0051 16.4 0.3 2.2 2 0 0 2 2 2 2 Putative treble-clef, zinc-finger, Zn-binding DUF35_N PF12172.8 gi|383319459|ref|YP_005380300.1| - 0.001 18.9 2.8 0.0017 18.2 2.8 1.4 1 1 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) PolC_DP2 PF03833.13 gi|383319459|ref|YP_005380300.1| - 0.0015 16.5 0.4 0.0015 16.5 0.4 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-NADH-PPase PF09297.11 gi|383319459|ref|YP_005380300.1| - 0.002 17.7 3.0 0.5 10.1 0.5 2.2 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain RecR PF02132.15 gi|383319459|ref|YP_005380300.1| - 0.0038 16.8 0.7 0.0049 16.4 0.7 1.2 1 0 0 1 1 1 1 RecR protein DUF1272 PF06906.11 gi|383319459|ref|YP_005380300.1| - 0.0052 16.8 1.9 0.0061 16.6 1.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) NOB1_Zn_bind PF08772.11 gi|383319459|ref|YP_005380300.1| - 0.0064 16.6 0.9 0.069 13.3 0.9 2.0 1 1 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-C4_Topoisom PF01396.19 gi|383319459|ref|YP_005380300.1| - 0.01 15.6 5.5 0.46 10.3 0.5 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.16 gi|383319459|ref|YP_005380300.1| - 0.013 15.6 4.1 1.1 9.4 0.2 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|383319459|ref|YP_005380300.1| - 0.023 14.2 6.4 2.5 7.7 0.6 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|383319459|ref|YP_005380300.1| - 0.023 14.1 9.3 0.34 10.4 9.3 2.1 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|383319459|ref|YP_005380300.1| - 0.038 14.0 0.6 0.042 13.9 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-IS66 PF13005.7 gi|383319459|ref|YP_005380300.1| - 0.043 14.2 5.8 0.7 10.3 0.4 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DZR PF12773.7 gi|383319459|ref|YP_005380300.1| - 0.05 13.6 3.2 0.069 13.2 3.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon Mu-like_Com PF10122.9 gi|383319459|ref|YP_005380300.1| - 0.055 12.9 4.9 1.3 8.5 0.5 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com NRDD PF13597.6 gi|383319459|ref|YP_005380300.1| - 0.086 11.6 1.3 0.086 11.6 1.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-FPG_IleRS PF06827.14 gi|383319459|ref|YP_005380300.1| - 0.13 12.1 5.6 0.31 11.0 0.5 2.2 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS TFIIS_C PF01096.18 gi|383319459|ref|YP_005380300.1| - 0.16 11.8 3.5 3.4 7.6 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Nudix_N_2 PF14803.6 gi|383319459|ref|YP_005380300.1| - 0.22 11.5 4.3 3.4 7.7 0.4 2.2 2 0 0 2 2 2 0 Nudix N-terminal CpXC PF14353.6 gi|383319459|ref|YP_005380300.1| - 0.24 11.5 3.0 1.6 8.8 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf_Rg PF17915.1 gi|383319459|ref|YP_005380300.1| - 0.24 10.8 0.5 0.24 10.8 0.5 2.1 1 1 1 2 2 2 0 Reverse gyrase zinc finger zf-ACC PF17848.1 gi|383319459|ref|YP_005380300.1| - 0.26 11.4 7.0 0.47 10.6 0.4 2.2 1 1 1 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn-ribbon_8 PF09723.10 gi|383319459|ref|YP_005380300.1| - 0.28 11.3 7.8 34 4.6 7.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|383319459|ref|YP_005380300.1| - 0.29 11.3 10.0 51 4.1 10.0 2.3 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.6 gi|383319459|ref|YP_005380300.1| - 0.31 10.8 9.5 22 4.9 9.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|383319459|ref|YP_005380300.1| - 0.57 10.2 5.1 1.8 8.6 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|383319459|ref|YP_005380300.1| - 0.6 9.7 3.0 9.1 6.0 0.3 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-TFIIB PF13453.6 gi|383319459|ref|YP_005380300.1| - 0.7 9.3 6.5 4.8 6.6 1.1 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger PADR1 PF08063.12 gi|383319459|ref|YP_005380300.1| - 0.78 9.6 6.9 6.3 6.7 0.5 2.1 1 1 1 2 2 2 0 PADR1 (NUC008) domain zf-ISL3 PF14690.6 gi|383319459|ref|YP_005380300.1| - 0.81 10.4 5.8 5.4 7.8 0.5 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Anti-TRAP PF15777.5 gi|383319459|ref|YP_005380300.1| - 1.4 9.0 7.5 14 5.7 7.5 2.0 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF2072 PF09845.9 gi|383319459|ref|YP_005380300.1| - 1.5 9.1 4.1 12 6.2 4.1 1.9 1 1 0 1 1 1 0 Zn-ribbon containing protein zf_C2H2_10 PF18414.1 gi|383319459|ref|YP_005380300.1| - 1.5 8.4 6.1 0.8 9.3 0.6 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger OrfB_Zn_ribbon PF07282.11 gi|383319459|ref|YP_005380300.1| - 2 8.4 5.8 3.2 7.8 0.4 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF3797 PF12677.7 gi|383319459|ref|YP_005380300.1| - 3.3 7.7 6.0 7.4 6.6 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) YhfH PF14149.6 gi|383319459|ref|YP_005380300.1| - 3.9 7.5 12.2 0.52 10.3 1.6 2.5 2 1 1 3 3 2 0 YhfH-like protein zinc_ribbon_9 PF14369.6 gi|383319459|ref|YP_005380300.1| - 4.6 7.6 7.0 6.6 7.1 0.6 2.2 1 1 1 2 2 2 0 zinc-ribbon DUF1610 PF07754.11 gi|383319459|ref|YP_005380300.1| - 4.7 7.3 10.6 7.5 6.6 1.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_5 PF13719.6 gi|383319459|ref|YP_005380300.1| - 6 6.7 6.4 9.2 6.1 0.8 2.2 1 1 1 2 2 2 0 zinc-ribbon domain PAC2 PF09754.9 gi|383319460|ref|YP_005380301.1| - 5.8e-48 163.7 0.0 6.6e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Histone_HNS PF00816.21 gi|383319460|ref|YP_005380301.1| - 0.2 12.5 0.7 12 6.8 1.4 2.2 2 0 0 2 2 2 0 H-NS histone family VSG_B PF13206.6 gi|383319460|ref|YP_005380301.1| - 0.22 10.8 0.1 0.26 10.5 0.1 1.1 1 0 0 1 1 1 0 Trypanosomal VSG domain SurE PF01975.17 gi|383319461|ref|YP_005380302.1| - 1.5e-54 184.7 0.6 1.9e-54 184.4 0.6 1.1 1 0 0 1 1 1 1 Survival protein SurE MFS_1 PF07690.16 gi|383319462|ref|YP_005380303.1| - 3.6e-53 180.7 48.5 2.3e-52 178.1 49.5 1.7 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|383319462|ref|YP_005380303.1| - 1.9e-05 23.4 10.5 1.9e-05 23.4 10.5 3.1 2 1 0 3 3 3 1 MFS/sugar transport protein OATP PF03137.20 gi|383319462|ref|YP_005380303.1| - 0.0039 15.6 30.8 0.19 10.0 0.5 4.1 2 2 2 4 4 4 3 Organic Anion Transporter Polypeptide (OATP) family TAL_effector PF03377.13 gi|383319462|ref|YP_005380303.1| - 0.12 12.7 0.2 24 5.4 0.0 2.8 2 0 0 2 2 2 0 TAL effector repeat ATP-grasp_3 PF02655.14 gi|383319463|ref|YP_005380304.1| - 2.8e-34 118.5 0.0 4.8e-34 117.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|383319463|ref|YP_005380304.1| - 4.6e-05 23.6 0.0 9.1e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 pre ATP-grasp 3 domain ATPgrasp_Ter PF15632.6 gi|383319463|ref|YP_005380304.1| - 0.0062 16.3 0.0 0.015 15.1 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|383319463|ref|YP_005380304.1| - 0.069 12.7 0.0 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 D-ala D-ala ligase C-terminus Hydantoinase_A PF01968.18 gi|383319464|ref|YP_005380305.1| - 2.3e-20 73.1 0.4 2.3e-20 73.1 0.4 1.4 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|383319464|ref|YP_005380305.1| - 0.0026 16.4 0.2 0.066 11.8 0.0 2.4 3 0 0 3 3 3 1 MutL protein FtsA PF14450.6 gi|383319464|ref|YP_005380305.1| - 0.015 15.7 0.8 1.3 9.4 0.1 2.7 2 2 0 2 2 2 0 Cell division protein FtsA Methyltransf_18 PF12847.7 gi|383319464|ref|YP_005380305.1| - 0.042 13.8 0.1 0.075 13.0 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain T2SSE PF00437.20 gi|383319465|ref|YP_005380306.1| - 2.8e-45 154.5 0.0 4.6e-45 153.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|383319465|ref|YP_005380306.1| - 0.023 14.5 0.0 0.048 13.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSF PF00482.23 gi|383319466|ref|YP_005380307.1| - 2.5e-31 108.2 1.0 3.7e-17 62.5 0.2 5.7 8 1 0 8 8 8 2 Type II secretion system (T2SS), protein F Herpes_UL4 PF03277.13 gi|383319466|ref|YP_005380307.1| - 0.081 12.5 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 Herpesvirus UL4 family Amnionless PF14828.6 gi|383319466|ref|YP_005380307.1| - 0.19 10.5 1.2 0.9 8.3 0.1 2.4 2 1 0 2 2 2 0 Amnionless ATPase PF06745.13 gi|383319467|ref|YP_005380308.1| - 1.3e-06 28.0 0.0 1.8e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 KaiC CitT PF12431.8 gi|383319467|ref|YP_005380308.1| - 0.0099 16.2 0.0 0.021 15.2 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator LysE PF01810.18 gi|383319469|ref|YP_005380310.1| - 9.2e-28 97.0 11.7 1.1e-27 96.8 11.7 1.0 1 0 0 1 1 1 1 LysE type translocator DUF981 PF06168.11 gi|383319469|ref|YP_005380310.1| - 0.034 14.1 8.9 0.15 12.0 2.4 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF981) PRA1 PF03208.19 gi|383319469|ref|YP_005380310.1| - 4.3 7.0 7.1 2.1 8.0 0.4 2.4 1 1 1 2 2 2 0 PRA1 family protein DZR PF12773.7 gi|383319470|ref|YP_005380311.1| - 0.0018 18.2 3.7 0.0032 17.5 3.7 1.5 1 1 0 1 1 1 1 Double zinc ribbon DUF4428 PF14471.6 gi|383319470|ref|YP_005380311.1| - 0.0075 16.2 0.7 0.011 15.7 0.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) RecR PF02132.15 gi|383319470|ref|YP_005380311.1| - 0.011 15.3 1.4 0.011 15.3 1.4 2.1 2 0 0 2 2 2 0 RecR protein zf-ribbon_3 PF13248.6 gi|383319470|ref|YP_005380311.1| - 0.024 14.1 0.7 0.024 14.1 0.7 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF1258 PF06869.12 gi|383319470|ref|YP_005380311.1| - 0.035 13.6 0.4 0.042 13.3 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) Ribosomal_L37e PF01907.19 gi|383319470|ref|YP_005380311.1| - 0.043 14.0 9.9 0.87 9.8 3.4 2.3 2 1 0 2 2 2 0 Ribosomal protein L37e DUF2180 PF09947.9 gi|383319470|ref|YP_005380311.1| - 0.053 13.5 2.3 0.053 13.5 2.3 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) zinc-ribbons_6 PF07191.12 gi|383319470|ref|YP_005380311.1| - 0.059 13.4 8.1 0.19 11.7 1.8 2.1 1 1 0 2 2 2 0 zinc-ribbons zf-FPG_IleRS PF06827.14 gi|383319470|ref|YP_005380311.1| - 0.063 13.2 7.8 1.7 8.6 0.1 3.0 2 1 1 3 3 3 0 Zinc finger found in FPG and IleRS zf-NADH-PPase PF09297.11 gi|383319470|ref|YP_005380311.1| - 0.43 10.3 9.9 11 5.8 4.3 3.7 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|383319470|ref|YP_005380311.1| - 0.47 10.3 6.8 0.72 9.6 1.7 2.8 2 1 0 2 2 2 0 zinc-ribbon domain PolC_DP2 PF03833.13 gi|383319470|ref|YP_005380311.1| - 0.62 7.8 2.3 0.66 7.8 2.3 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Cys_rich_KTR PF14205.6 gi|383319470|ref|YP_005380311.1| - 1.8 8.4 5.1 8.3 6.3 5.1 2.2 1 1 0 1 1 1 0 Cysteine-rich KTR zf_UBZ PF18439.1 gi|383319470|ref|YP_005380311.1| - 3.4 7.3 7.9 5.2 6.8 0.3 3.2 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-B_box PF00643.24 gi|383319470|ref|YP_005380311.1| - 3.8 7.7 8.3 1.7 8.8 1.0 2.4 2 1 0 2 2 2 0 B-box zinc finger DUF362 PF04015.12 gi|383319471|ref|YP_005380312.1| - 8e-24 85.0 0.0 1.1e-23 84.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Lactamase_B_3 PF13483.6 gi|383319472|ref|YP_005380313.1| - 1.2e-19 70.8 0.1 1.6e-19 70.4 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|383319472|ref|YP_005380313.1| - 4.8e-18 65.4 0.2 6.3e-18 65.0 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|383319472|ref|YP_005380313.1| - 1.2e-09 38.5 0.8 2.6e-09 37.4 0.8 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Gly-zipper_YMGG PF13441.6 gi|383319473|ref|YP_005380314.1| - 0.01 15.6 11.0 0.067 12.9 1.3 2.2 2 0 0 2 2 2 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|383319473|ref|YP_005380314.1| - 0.023 14.7 2.0 0.023 14.7 2.0 2.1 1 1 1 2 2 2 0 Glycine zipper Gly-zipper_OmpA PF13436.6 gi|383319473|ref|YP_005380314.1| - 0.042 13.6 8.2 0.37 10.6 0.1 2.3 2 0 0 2 2 2 0 Glycine-zipper domain Bacteriocin_IIc PF10439.9 gi|383319473|ref|YP_005380314.1| - 0.56 10.4 11.3 0.68 10.1 1.7 2.2 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide DUF456 PF04306.13 gi|383319473|ref|YP_005380314.1| - 0.88 9.9 11.8 1.9 8.8 11.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF456) DUF2953 PF11167.8 gi|383319473|ref|YP_005380314.1| - 1.4 9.0 5.5 10 6.3 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) FtsX PF02687.21 gi|383319473|ref|YP_005380314.1| - 3.1 8.3 9.6 6 7.4 9.6 1.5 1 1 0 1 1 1 0 FtsX-like permease family FeoB_C PF07664.12 gi|383319473|ref|YP_005380314.1| - 4 7.2 6.4 16 5.3 0.4 2.3 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus PadR PF03551.14 gi|383319474|ref|YP_005380315.1| - 0.16 11.9 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MEDS PF14417.6 gi|383319475|ref|YP_005380316.1| - 5.1e-42 143.4 0.0 8.9e-42 142.7 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.26 gi|383319475|ref|YP_005380316.1| - 2.8e-18 66.4 0.0 5.8e-18 65.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|383319475|ref|YP_005380316.1| - 0.0015 18.5 0.0 0.003 17.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain zf_C2H2_13 PF18508.1 gi|383319475|ref|YP_005380316.1| - 0.034 13.8 0.9 12 5.5 0.1 3.6 4 0 0 4 4 4 0 Zinc finger domain HATPase_c_3 PF13589.6 gi|383319475|ref|YP_005380316.1| - 0.048 13.5 0.0 0.092 12.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase bcl-2I13 PF12201.8 gi|383319475|ref|YP_005380316.1| - 0.065 13.1 0.2 0.11 12.4 0.2 1.4 1 0 0 1 1 1 0 Bcl2-interacting killer, BH3-domain containing HTH_24 PF13412.6 gi|383319476|ref|YP_005380317.1| - 2.2e-14 52.7 0.1 3.5e-14 52.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|383319476|ref|YP_005380317.1| - 5.6e-13 48.5 0.0 8.7e-13 47.9 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|383319476|ref|YP_005380317.1| - 7.3e-07 29.1 0.0 1.2e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|383319476|ref|YP_005380317.1| - 8.8e-07 28.8 0.0 1.7e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|383319476|ref|YP_005380317.1| - 3.8e-06 26.7 0.1 6.4e-06 26.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|383319476|ref|YP_005380317.1| - 1.2e-05 25.4 0.2 2e-05 24.6 0.2 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|383319476|ref|YP_005380317.1| - 2.6e-05 24.1 0.1 5.2e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|383319476|ref|YP_005380317.1| - 5.1e-05 23.2 0.0 7.6e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|383319476|ref|YP_005380317.1| - 0.00015 21.6 0.0 0.0003 20.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|383319476|ref|YP_005380317.1| - 0.00018 21.4 0.0 0.00029 20.7 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_23 PF13384.6 gi|383319476|ref|YP_005380317.1| - 0.00065 19.4 0.1 0.001 18.8 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Crp PF00325.20 gi|383319476|ref|YP_005380317.1| - 0.00075 19.1 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family AbiEi_4 PF13338.6 gi|383319476|ref|YP_005380317.1| - 0.0037 17.4 0.1 0.0078 16.3 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_34 PF13601.6 gi|383319476|ref|YP_005380317.1| - 0.0041 17.3 0.0 0.0069 16.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.21 gi|383319476|ref|YP_005380317.1| - 0.0042 16.7 0.1 0.0062 16.2 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HxlR PF01638.17 gi|383319476|ref|YP_005380317.1| - 0.0094 15.8 0.0 0.028 14.3 0.0 1.7 2 0 0 2 2 2 1 HxlR-like helix-turn-helix HTH_29 PF13551.6 gi|383319476|ref|YP_005380317.1| - 0.01 15.9 0.1 0.016 15.2 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4_2 PF08281.12 gi|383319476|ref|YP_005380317.1| - 0.013 15.2 0.1 0.021 14.5 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|383319476|ref|YP_005380317.1| - 0.016 14.9 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_3 PF01381.22 gi|383319476|ref|YP_005380317.1| - 0.019 15.0 0.0 0.038 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_30 PF13556.6 gi|383319476|ref|YP_005380317.1| - 0.022 14.6 0.1 0.044 13.6 0.1 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HU-CCDC81_euk_2 PF18289.1 gi|383319476|ref|YP_005380317.1| - 0.038 14.1 0.1 0.079 13.1 0.1 1.5 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 DUF2250 PF10007.9 gi|383319476|ref|YP_005380317.1| - 0.053 13.6 0.0 0.092 12.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|383319476|ref|YP_005380317.1| - 0.067 13.1 0.1 0.14 12.0 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|383319476|ref|YP_005380317.1| - 0.074 13.4 0.0 0.14 12.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF1441 PF07278.11 gi|383319476|ref|YP_005380317.1| - 0.08 12.9 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1441) LexA_DNA_bind PF01726.16 gi|383319476|ref|YP_005380317.1| - 0.081 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain PheRS_DBD1 PF18552.1 gi|383319476|ref|YP_005380317.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 PheRS DNA binding domain 1 Sigma70_r4 PF04545.16 gi|383319476|ref|YP_005380317.1| - 0.14 11.7 0.0 0.28 10.7 0.0 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 FaeA PF04703.12 gi|383319476|ref|YP_005380317.1| - 0.14 12.5 0.1 0.32 11.4 0.1 1.5 1 0 0 1 1 1 0 FaeA-like protein DUF2948 PF11164.8 gi|383319476|ref|YP_005380317.1| - 0.17 11.9 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2948) AdoHcyase PF05221.17 gi|383319477|ref|YP_005380318.1| - 8.6e-68 228.7 0.0 3e-36 125.1 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|383319477|ref|YP_005380318.1| - 5.4e-54 182.6 2.7 5.4e-54 182.6 2.7 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|383319477|ref|YP_005380318.1| - 5.6e-13 48.6 1.6 7.7e-13 48.2 0.6 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|383319477|ref|YP_005380318.1| - 2.6e-09 36.9 0.9 5.3e-09 35.9 0.2 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox_2 PF07992.14 gi|383319477|ref|YP_005380318.1| - 0.0034 16.7 0.3 0.0098 15.2 0.3 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|383319477|ref|YP_005380318.1| - 0.012 15.8 1.3 0.037 14.3 0.1 2.4 2 1 1 3 3 3 0 TrkA-N domain 3HCDH_N PF02737.18 gi|383319477|ref|YP_005380318.1| - 0.033 14.1 2.1 0.17 11.7 0.3 2.7 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|383319477|ref|YP_005380318.1| - 0.071 12.4 1.9 0.18 11.1 1.9 1.7 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF364 PF04016.12 gi|383319477|ref|YP_005380318.1| - 0.15 11.6 0.7 0.49 10.0 0.0 2.2 3 0 0 3 3 3 0 Putative heavy-metal chelation Pyr_redox PF00070.27 gi|383319477|ref|YP_005380318.1| - 0.42 11.2 3.4 1.5 9.4 0.3 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase PfkB PF00294.24 gi|383319478|ref|YP_005380319.1| - 6.9e-28 97.8 0.0 9.9e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase APH PF01636.23 gi|383319479|ref|YP_005380320.1| - 1.2e-06 28.6 0.0 2e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|383319479|ref|YP_005380320.1| - 0.032 13.8 0.0 0.066 12.8 0.0 1.4 1 0 0 1 1 1 0 RIO1 family EcKinase PF02958.20 gi|383319479|ref|YP_005380320.1| - 0.038 13.3 0.0 0.058 12.7 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase APS_kinase PF01583.20 gi|383319480|ref|YP_005380321.1| - 8.1e-29 100.5 0.0 1e-28 100.3 0.0 1.1 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|383319480|ref|YP_005380321.1| - 2.4e-10 40.8 0.0 3.4e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|383319480|ref|YP_005380321.1| - 1.2e-07 31.5 0.0 1.4e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|383319480|ref|YP_005380321.1| - 1.7e-07 31.8 0.0 2.4e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain CPT PF07931.12 gi|383319480|ref|YP_005380321.1| - 6.3e-07 29.4 0.1 6.9e-06 26.0 0.1 2.0 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein ATP_bind_1 PF03029.17 gi|383319480|ref|YP_005380321.1| - 9.2e-06 25.6 0.0 1.1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|383319480|ref|YP_005380321.1| - 1e-05 25.6 0.3 1.6e-05 24.9 0.3 1.3 1 0 0 1 1 1 1 NTPase Zeta_toxin PF06414.12 gi|383319480|ref|YP_005380321.1| - 1.4e-05 24.5 0.0 1.9e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin 6PF2K PF01591.18 gi|383319480|ref|YP_005380321.1| - 1.5e-05 24.4 0.1 7.9e-05 22.1 0.1 1.8 1 1 0 1 1 1 1 6-phosphofructo-2-kinase MeaB PF03308.16 gi|383319480|ref|YP_005380321.1| - 4e-05 22.8 0.4 7.3e-05 21.9 0.3 1.5 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|383319480|ref|YP_005380321.1| - 0.00039 20.2 0.1 0.00053 19.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain PRK PF00485.18 gi|383319480|ref|YP_005380321.1| - 0.00084 19.1 0.5 0.44 10.2 0.1 2.1 1 1 1 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.6 gi|383319480|ref|YP_005380321.1| - 0.0012 18.9 0.0 0.0016 18.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|383319480|ref|YP_005380321.1| - 0.004 16.8 0.2 0.012 15.2 0.2 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA PF00004.29 gi|383319480|ref|YP_005380321.1| - 0.011 16.1 0.2 0.029 14.8 0.2 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 gi|383319480|ref|YP_005380321.1| - 0.015 15.0 0.1 0.054 13.2 0.1 2.0 2 1 0 2 2 2 0 Thymidylate kinase AAA_16 PF13191.6 gi|383319480|ref|YP_005380321.1| - 0.017 15.5 0.1 0.017 15.5 0.1 1.3 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.14 gi|383319480|ref|YP_005380321.1| - 0.021 14.7 0.1 0.034 14.1 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 gi|383319480|ref|YP_005380321.1| - 0.021 15.1 0.9 0.04 14.3 0.9 1.6 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|383319480|ref|YP_005380321.1| - 0.029 14.8 0.2 0.077 13.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|383319480|ref|YP_005380321.1| - 0.042 14.2 0.0 0.085 13.3 0.0 1.5 1 1 0 1 1 1 0 RNA helicase AAA_29 PF13555.6 gi|383319480|ref|YP_005380321.1| - 0.043 13.6 0.1 0.096 12.4 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF463 PF04317.12 gi|383319480|ref|YP_005380321.1| - 0.048 12.6 0.0 0.061 12.3 0.0 1.1 1 0 0 1 1 1 0 YcjX-like family, DUF463 SKI PF01202.22 gi|383319480|ref|YP_005380321.1| - 0.048 13.8 0.1 0.15 12.2 0.1 1.7 2 1 0 2 2 2 0 Shikimate kinase NACHT PF05729.12 gi|383319480|ref|YP_005380321.1| - 0.092 12.7 0.4 0.2 11.6 0.3 1.5 1 1 0 1 1 1 0 NACHT domain MipZ PF09140.11 gi|383319480|ref|YP_005380321.1| - 0.13 11.6 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 ATPase MipZ CbiA PF01656.23 gi|383319480|ref|YP_005380321.1| - 0.14 12.2 0.1 0.14 12.2 0.1 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain T2SSE PF00437.20 gi|383319480|ref|YP_005380321.1| - 0.16 11.0 0.4 0.23 10.5 0.3 1.3 1 1 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.19 gi|383319480|ref|YP_005380321.1| - 0.19 11.3 0.7 0.32 10.6 0.5 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Inositol_P PF00459.25 gi|383319481|ref|YP_005380322.1| - 6.8e-31 107.8 0.0 9e-31 107.4 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|383319481|ref|YP_005380322.1| - 2.7e-08 33.5 0.0 4.7e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Flavoprotein PF02441.19 gi|383319483|ref|YP_005380324.1| - 5.7e-21 74.9 0.0 1.1e-20 74.0 0.0 1.4 2 0 0 2 2 2 1 Flavoprotein Fer4 PF00037.27 gi|383319483|ref|YP_005380324.1| - 3.7e-09 36.0 11.7 1.3e-06 27.9 0.9 3.2 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|383319483|ref|YP_005380324.1| - 2.3e-05 24.2 11.9 0.015 15.3 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|383319483|ref|YP_005380324.1| - 3.5e-05 23.9 9.9 0.0094 16.1 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383319483|ref|YP_005380324.1| - 0.00069 19.6 17.3 0.0014 18.6 1.1 3.1 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|383319483|ref|YP_005380324.1| - 0.0011 19.8 9.4 0.0083 17.0 0.1 2.6 3 0 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|383319483|ref|YP_005380324.1| - 0.0023 18.5 15.2 0.0098 16.5 1.6 2.5 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383319483|ref|YP_005380324.1| - 0.0044 17.5 6.6 0.16 12.5 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383319483|ref|YP_005380324.1| - 0.0079 16.6 5.2 0.12 12.8 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383319483|ref|YP_005380324.1| - 0.0099 16.3 1.9 0.0099 16.3 1.9 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|383319483|ref|YP_005380324.1| - 0.024 15.3 9.0 0.19 12.5 0.2 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_10 PF13237.6 gi|383319483|ref|YP_005380324.1| - 0.032 14.4 13.9 0.13 12.4 14.1 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383319483|ref|YP_005380324.1| - 5 7.7 14.9 2.9 8.5 1.7 3.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|383319483|ref|YP_005380324.1| - 6 7.1 14.3 3.2 7.9 2.7 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Ribosomal_S27e PF01667.17 gi|383319484|ref|YP_005380325.1| - 0.045 13.5 2.5 0.091 12.5 0.2 2.3 2 0 0 2 2 2 0 Ribosomal protein S27 zf-NADH-PPase PF09297.11 gi|383319484|ref|YP_005380325.1| - 0.096 12.4 6.1 0.85 9.3 0.2 3.2 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain CpXC PF14353.6 gi|383319484|ref|YP_005380325.1| - 0.13 12.3 2.7 0.16 12.0 0.3 2.3 1 1 0 2 2 2 0 CpXC protein zf-dskA_traR PF01258.17 gi|383319484|ref|YP_005380325.1| - 0.36 10.8 0.3 0.36 10.8 0.3 3.1 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger DNA_ligase_ZBD PF03119.16 gi|383319484|ref|YP_005380325.1| - 0.43 10.7 5.6 5 7.2 0.2 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_ribbon_SprT PF17283.2 gi|383319484|ref|YP_005380325.1| - 0.74 9.8 11.4 7.5 6.6 1.6 3.6 3 1 0 3 3 3 0 SprT-like zinc ribbon domain zf-ACC PF17848.1 gi|383319484|ref|YP_005380325.1| - 0.98 9.5 0.0 0.98 9.5 0.0 3.9 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain DZR PF12773.7 gi|383319484|ref|YP_005380325.1| - 2.1 8.4 8.5 0.24 11.5 0.3 2.7 2 2 0 2 2 2 0 Double zinc ribbon zinc_ribbon_5 PF13719.6 gi|383319484|ref|YP_005380325.1| - 3.7 7.4 7.3 27 4.6 0.1 3.5 3 0 0 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.9 gi|383319484|ref|YP_005380325.1| - 3.8 7.7 11.6 2 8.6 4.9 3.1 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Mu-like_Com PF10122.9 gi|383319484|ref|YP_005380325.1| - 4.1 6.9 8.6 69 3.0 0.0 3.3 2 1 0 2 2 2 0 Mu-like prophage protein Com Prok-RING_1 PF14446.6 gi|383319484|ref|YP_005380325.1| - 4.9 7.2 9.2 0.3 11.1 1.0 2.9 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 YhfH PF14149.6 gi|383319484|ref|YP_005380325.1| - 5.1 7.2 12.0 2.5 8.2 0.3 3.5 2 1 1 3 3 3 0 YhfH-like protein DUF35_N PF12172.8 gi|383319484|ref|YP_005380325.1| - 7.6 6.5 11.5 25 4.9 0.4 3.6 3 1 1 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C3HC4_3 PF13920.6 gi|383319484|ref|YP_005380325.1| - 8.7 6.3 8.8 0.6 10.0 0.4 2.8 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) PvlArgDC PF01862.16 gi|383319485|ref|YP_005380326.1| - 9.5e-61 204.3 0.0 1.1e-60 204.2 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) S_4TM PF18159.1 gi|383319486|ref|YP_005380327.1| - 0.33 10.2 1.0 0.34 10.2 1.0 1.0 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain Phage_holin_3_6 PF07332.11 gi|383319486|ref|YP_005380327.1| - 0.33 11.0 3.9 0.41 10.7 3.9 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4175 PF13779.6 gi|383319486|ref|YP_005380327.1| - 1.8 6.4 2.3 1.8 6.4 2.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) DUF2207 PF09972.9 gi|383319486|ref|YP_005380327.1| - 6.7 5.4 6.1 7.1 5.3 6.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PAPS_reduct PF01507.19 gi|383319487|ref|YP_005380328.1| - 7.4e-45 153.1 0.0 1e-44 152.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_10 PF13237.6 gi|383319487|ref|YP_005380328.1| - 7e-06 26.1 9.8 7e-06 26.1 9.8 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|383319487|ref|YP_005380328.1| - 3e-05 23.6 2.0 3e-05 23.6 2.0 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383319487|ref|YP_005380328.1| - 5.1e-05 23.8 11.3 5.1e-05 23.8 11.3 2.6 4 0 0 4 4 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383319487|ref|YP_005380328.1| - 0.00017 21.7 23.2 0.00083 19.5 13.2 3.2 4 1 1 5 5 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383319487|ref|YP_005380328.1| - 0.00025 21.5 7.3 0.027 15.0 0.4 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383319487|ref|YP_005380328.1| - 0.00053 20.4 10.0 0.1 13.1 1.2 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain ATP_bind_3 PF01171.20 gi|383319487|ref|YP_005380328.1| - 0.0028 17.5 0.0 0.0048 16.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family Fer4_16 PF13484.6 gi|383319487|ref|YP_005380328.1| - 0.0035 18.2 3.9 0.0035 18.2 3.9 3.4 3 1 1 4 4 2 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|383319487|ref|YP_005380328.1| - 0.0082 16.3 3.5 0.022 14.9 3.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383319487|ref|YP_005380328.1| - 0.0088 16.1 2.7 0.0088 16.1 2.7 4.1 4 1 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383319487|ref|YP_005380328.1| - 0.0096 16.0 12.3 0.014 15.4 2.9 3.9 4 0 0 4 4 3 2 4Fe-4S binding domain QueC PF06508.13 gi|383319487|ref|YP_005380328.1| - 0.094 12.2 0.0 0.094 12.2 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|383319487|ref|YP_005380328.1| - 0.22 11.2 0.0 0.36 10.4 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Fer4_22 PF17179.4 gi|383319487|ref|YP_005380328.1| - 0.96 10.3 8.8 6.4 7.7 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383319487|ref|YP_005380328.1| - 3.1 8.6 6.3 35 5.2 0.6 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain HTH_45 PF14947.6 gi|383319488|ref|YP_005380329.1| - 2.4e-05 24.2 0.2 5.1e-05 23.2 0.2 1.6 1 1 1 2 2 2 1 Winged helix-turn-helix TrmB PF01978.19 gi|383319488|ref|YP_005380329.1| - 0.0024 17.7 0.1 0.0048 16.7 0.1 1.6 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|383319488|ref|YP_005380329.1| - 0.0077 16.1 0.1 0.0085 15.9 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.6 gi|383319488|ref|YP_005380329.1| - 0.0079 16.7 0.0 0.15 12.6 0.0 2.2 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|383319488|ref|YP_005380329.1| - 0.015 15.1 0.0 0.052 13.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) HxlR PF01638.17 gi|383319488|ref|YP_005380329.1| - 0.024 14.5 0.1 0.067 13.0 0.1 1.7 1 1 0 1 1 1 0 HxlR-like helix-turn-helix FeoC PF09012.10 gi|383319488|ref|YP_005380329.1| - 0.038 14.1 0.0 0.056 13.5 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF4777 PF16007.5 gi|383319488|ref|YP_005380329.1| - 0.047 14.0 0.1 1.9 8.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) Rrf2 PF02082.20 gi|383319488|ref|YP_005380329.1| - 0.085 13.2 0.0 0.15 12.4 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator HemN_C PF06969.16 gi|383319488|ref|YP_005380329.1| - 0.1 12.7 0.0 0.14 12.2 0.0 1.3 1 1 0 1 1 1 0 HemN C-terminal domain HTH_24 PF13412.6 gi|383319488|ref|YP_005380329.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MC1 PF05854.11 gi|383319489|ref|YP_005380330.1| - 6.6e-34 116.1 0.2 9e-34 115.7 0.2 1.1 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Dehalogenase PF13486.6 gi|383319489|ref|YP_005380330.1| - 0.1 11.9 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Reductive dehalogenase subunit DAO PF01266.24 gi|383319490|ref|YP_005380331.1| - 1.3e-41 143.4 0.6 1.7e-41 143.0 0.6 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|383319490|ref|YP_005380331.1| - 6.8e-07 28.8 1.1 0.0034 16.7 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|383319490|ref|YP_005380331.1| - 0.00017 21.8 1.3 0.0008 19.6 1.5 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|383319490|ref|YP_005380331.1| - 0.00035 19.9 1.0 0.00056 19.3 1.0 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|383319490|ref|YP_005380331.1| - 0.001 18.4 0.8 0.44 9.8 0.4 2.3 2 0 0 2 2 2 2 Thi4 family 3HCDH_N PF02737.18 gi|383319490|ref|YP_005380331.1| - 0.0012 18.7 0.6 0.003 17.5 0.4 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|383319490|ref|YP_005380331.1| - 0.0092 16.5 0.4 0.026 15.1 0.3 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|383319490|ref|YP_005380331.1| - 0.018 15.1 0.3 0.28 11.2 0.2 2.4 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.6 gi|383319490|ref|YP_005380331.1| - 0.026 14.5 1.2 6 6.8 0.3 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|383319490|ref|YP_005380331.1| - 0.047 12.8 1.1 0.082 12.0 1.1 1.4 1 0 0 1 1 1 0 FAD binding domain ApbA PF02558.16 gi|383319490|ref|YP_005380331.1| - 0.048 13.3 0.2 0.091 12.4 0.2 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.14 gi|383319490|ref|YP_005380331.1| - 0.31 9.7 0.3 0.58 8.8 0.3 1.4 1 0 0 1 1 1 0 HI0933-like protein Lycopene_cycl PF05834.12 gi|383319490|ref|YP_005380331.1| - 0.52 9.3 1.9 6.1 5.8 0.5 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein GIDA PF01134.22 gi|383319490|ref|YP_005380331.1| - 0.78 8.8 2.1 1.1 8.3 1.0 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A DUF192 PF02643.15 gi|383319491|ref|YP_005380332.1| - 3.4e-32 110.5 0.0 4.8e-32 110.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Exosortase_EpsH PF09721.10 gi|383319492|ref|YP_005380333.1| - 4.3e-10 39.6 16.9 7.6e-10 38.7 16.9 1.5 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Fumarate_red_C PF02300.17 gi|383319492|ref|YP_005380333.1| - 0.98 9.5 7.5 0.12 12.4 2.7 2.0 2 1 0 2 2 2 0 Fumarate reductase subunit C TMP-TENI PF02581.17 gi|383319493|ref|YP_005380334.1| - 7.6e-61 204.6 1.1 9e-61 204.3 1.1 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|383319493|ref|YP_005380334.1| - 1.4e-05 24.6 7.5 2.4e-05 23.9 7.1 1.5 1 1 1 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 gi|383319493|ref|YP_005380334.1| - 5.7e-05 22.4 0.2 9.3e-05 21.7 0.2 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|383319493|ref|YP_005380334.1| - 0.0026 16.8 2.9 0.026 13.6 0.2 2.8 3 0 0 3 3 3 1 FMN-dependent dehydrogenase ThiG PF05690.14 gi|383319493|ref|YP_005380334.1| - 0.004 16.5 4.5 0.0057 16.0 3.8 1.4 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|383319493|ref|YP_005380334.1| - 0.0062 15.7 0.9 0.013 14.7 0.4 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF561) FlpD PF02662.16 gi|383319493|ref|YP_005380334.1| - 0.043 13.8 1.3 0.42 10.6 0.1 2.3 2 1 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit HK PF02110.15 gi|383319494|ref|YP_005380335.1| - 6.4e-82 274.6 4.8 7.3e-82 274.5 4.8 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|383319494|ref|YP_005380335.1| - 1.3e-05 24.8 1.3 1.6e-05 24.5 1.3 1.3 1 1 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|383319494|ref|YP_005380335.1| - 4.6e-05 22.9 0.6 6.3e-05 22.5 0.6 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Flu_M1_C PF08289.11 gi|383319494|ref|YP_005380335.1| - 0.072 13.3 0.3 4.4 7.6 0.0 2.3 2 0 0 2 2 2 0 Influenza Matrix protein (M1) C-terminal domain Big_1 PF02369.16 gi|383319495|ref|YP_005380336.1| - 0.0085 16.1 0.1 0.021 14.8 0.1 1.7 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) DUF4198 PF10670.9 gi|383319495|ref|YP_005380336.1| - 0.056 13.8 0.0 0.077 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) FeoB_associated PF12669.7 gi|383319495|ref|YP_005380336.1| - 8.9 6.8 6.3 19 5.8 6.3 1.6 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein TALPID3 PF15324.6 gi|383319495|ref|YP_005380336.1| - 9.6 3.7 6.5 11 3.5 6.5 1.1 1 0 0 1 1 1 0 Hedgehog signalling target GCHY-1 PF02649.14 gi|383319496|ref|YP_005380337.1| - 5.2e-81 272.0 5.5 5.9e-81 271.8 5.5 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|383319496|ref|YP_005380337.1| - 0.0018 18.8 0.7 0.5 10.9 0.1 3.2 2 1 1 3 3 3 1 Dihydroneopterin aldolase DUF3335 PF11814.8 gi|383319496|ref|YP_005380337.1| - 0.11 11.9 0.4 1.7 8.0 0.0 2.4 2 0 0 2 2 2 0 Peptidase_C39 like family MCH PF02289.16 gi|383319497|ref|YP_005380338.1| - 1.1e-128 428.9 0.3 1.3e-128 428.7 0.3 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) DUF4388 PF14332.6 gi|383319498|ref|YP_005380339.1| - 0.17 12.2 0.0 9.4 6.6 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4388) EMP70 PF02990.16 gi|383319499|ref|YP_005380340.1| - 0.92 8.1 9.6 0.69 8.5 8.8 1.3 1 1 0 1 1 1 0 Endomembrane protein 70 DUF2614 PF11023.8 gi|383319499|ref|YP_005380340.1| - 1.8 8.6 5.9 2 8.6 5.6 1.2 1 1 0 1 1 1 0 Zinc-ribbon containing domain DUF2755 PF10954.8 gi|383319500|ref|YP_005380341.1| - 0.055 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2755) DNA_binding_1 PF01035.20 gi|383319501|ref|YP_005380342.1| - 3.1e-33 113.7 0.1 4.2e-33 113.3 0.1 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain hSac2 PF12456.8 gi|383319501|ref|YP_005380342.1| - 0.01 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Inositol phosphatase OmpA_like PF16961.5 gi|383319501|ref|YP_005380342.1| - 0.089 12.5 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Putative OmpA-OmpF-like porin family Acetyltransf_1 PF00583.25 gi|383319502|ref|YP_005380343.1| - 2.1e-13 50.6 0.1 2.8e-13 50.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|383319502|ref|YP_005380343.1| - 2.3e-11 43.7 0.2 3e-11 43.4 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|383319502|ref|YP_005380343.1| - 1.2e-08 35.2 0.1 1.7e-08 34.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|383319502|ref|YP_005380343.1| - 1.3e-06 28.6 0.1 1.7e-06 28.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|383319502|ref|YP_005380343.1| - 5.8e-06 26.2 0.0 8.2e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|383319502|ref|YP_005380343.1| - 0.00016 22.4 0.0 0.0002 22.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|383319502|ref|YP_005380343.1| - 0.0039 16.9 0.1 0.0065 16.2 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF535 PF04393.13 gi|383319502|ref|YP_005380343.1| - 0.034 13.4 0.0 0.62 9.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF535) Acetyltransf_CG PF14542.6 gi|383319502|ref|YP_005380343.1| - 0.091 12.9 0.0 0.26 11.4 0.0 1.7 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase DUF5591 PF17884.1 gi|383319503|ref|YP_005380344.1| - 7.3e-17 61.6 0.1 1e-16 61.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) DUF4524 PF15025.6 gi|383319503|ref|YP_005380344.1| - 0.086 12.6 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4524) DUF108 PF01958.18 gi|383319505|ref|YP_005380346.1| - 8.4e-34 115.8 0.8 1.6e-33 114.9 0.8 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|383319505|ref|YP_005380346.1| - 4.2e-26 91.9 0.8 4.2e-26 91.9 0.8 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|383319505|ref|YP_005380346.1| - 1.2e-07 32.6 0.5 3.5e-07 31.1 0.3 1.8 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|383319505|ref|YP_005380346.1| - 4.1e-07 30.5 1.4 7.9e-07 29.6 1.4 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 gi|383319505|ref|YP_005380346.1| - 6.5e-07 29.5 0.2 1.5e-06 28.3 0.1 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Shikimate_DH PF01488.20 gi|383319505|ref|YP_005380346.1| - 4.2e-05 23.6 0.3 0.00014 21.9 0.2 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|383319505|ref|YP_005380346.1| - 0.00017 21.0 0.1 0.00024 20.5 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|383319505|ref|YP_005380346.1| - 0.00069 19.8 0.2 0.001 19.3 0.2 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.24 gi|383319505|ref|YP_005380346.1| - 0.0015 18.9 0.1 0.0026 18.2 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|383319505|ref|YP_005380346.1| - 0.0021 18.0 0.2 0.0063 16.5 0.2 1.9 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Sacchrp_dh_NADP PF03435.18 gi|383319505|ref|YP_005380346.1| - 0.0078 16.5 0.9 0.034 14.4 0.9 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|383319505|ref|YP_005380346.1| - 0.032 13.9 0.7 0.14 11.8 0.7 2.1 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Gp_dh_N PF00044.24 gi|383319505|ref|YP_005380346.1| - 0.035 14.4 0.3 0.43 10.9 0.1 2.5 2 1 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|383319505|ref|YP_005380346.1| - 0.044 14.4 0.2 0.21 12.2 0.0 2.1 2 0 0 2 2 2 0 PglD N-terminal domain 3HCDH_N PF02737.18 gi|383319505|ref|YP_005380346.1| - 0.087 12.7 1.3 0.34 10.8 1.1 2.0 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SHMT PF00464.19 gi|383319505|ref|YP_005380346.1| - 0.087 11.4 0.0 0.12 11.0 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase ThiF PF00899.21 gi|383319505|ref|YP_005380346.1| - 0.35 10.2 2.1 1.2 8.4 0.1 2.2 2 1 0 2 2 2 0 ThiF family QRPTase_C PF01729.19 gi|383319506|ref|YP_005380347.1| - 9.6e-58 194.7 0.8 1.2e-57 194.3 0.8 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|383319506|ref|YP_005380347.1| - 4.2e-22 78.0 0.1 1.3e-21 76.4 0.0 1.8 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain TMP-TENI PF02581.17 gi|383319506|ref|YP_005380347.1| - 0.00014 21.3 0.2 0.00028 20.3 0.2 1.5 1 0 0 1 1 1 1 Thiamine monophosphate synthase KDGP_aldolase PF07071.11 gi|383319506|ref|YP_005380347.1| - 0.098 12.5 0.2 0.17 11.6 0.2 1.3 1 0 0 1 1 1 0 KDGP aldolase AAA_26 PF13500.6 gi|383319507|ref|YP_005380348.1| - 7.1e-37 127.2 0.0 1.4e-36 126.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.12 gi|383319507|ref|YP_005380348.1| - 8.4e-27 93.0 0.0 1.5e-26 92.2 0.0 1.4 1 0 0 1 1 1 1 DRTGG domain CbiA PF01656.23 gi|383319507|ref|YP_005380348.1| - 0.00074 19.6 0.1 0.014 15.5 0.0 2.7 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|383319507|ref|YP_005380348.1| - 0.017 14.6 0.1 0.56 9.6 0.0 2.3 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase PucR PF07905.11 gi|383319507|ref|YP_005380348.1| - 0.053 13.8 0.1 0.39 11.0 0.1 2.3 1 1 0 1 1 1 0 Purine catabolism regulatory protein-like family RuBisCO_large PF00016.20 gi|383319508|ref|YP_005380349.1| - 2.8e-83 279.5 0.2 4.6e-83 278.8 0.2 1.3 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|383319508|ref|YP_005380349.1| - 6.2e-20 71.6 0.0 1.3e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain PEP_mutase PF13714.6 gi|383319508|ref|YP_005380349.1| - 0.047 13.1 0.1 0.12 11.8 0.2 1.7 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase AAA_31 PF13614.6 gi|383319509|ref|YP_005380350.1| - 3.1e-22 79.4 0.0 4.6e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|383319509|ref|YP_005380350.1| - 2.8e-17 63.0 1.7 1.2e-16 60.9 1.7 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|383319509|ref|YP_005380350.1| - 1.1e-16 61.0 0.0 6.3e-16 58.6 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|383319509|ref|YP_005380350.1| - 1.5e-09 37.5 0.5 1.5e-08 34.3 0.5 2.0 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|383319509|ref|YP_005380350.1| - 6.8e-08 32.6 0.1 1e-06 28.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain CBP_BcsQ PF06564.12 gi|383319509|ref|YP_005380350.1| - 4e-07 29.8 0.0 7e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|383319509|ref|YP_005380350.1| - 1.2e-05 24.9 0.1 0.056 12.9 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family GTP_EFTU PF00009.27 gi|383319509|ref|YP_005380350.1| - 4.8e-05 23.0 0.0 0.0001 21.9 0.0 1.5 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain ArsA_ATPase PF02374.15 gi|383319509|ref|YP_005380350.1| - 6.2e-05 22.3 0.1 0.00014 21.1 0.0 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|383319509|ref|YP_005380350.1| - 0.00025 20.7 0.1 0.00039 20.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|383319509|ref|YP_005380350.1| - 0.00051 19.9 0.2 0.0089 15.8 0.2 2.4 1 1 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop FTHFS PF01268.19 gi|383319509|ref|YP_005380350.1| - 0.013 13.7 0.1 0.018 13.3 0.1 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase AAA_24 PF13479.6 gi|383319509|ref|YP_005380350.1| - 0.062 13.0 0.0 0.092 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|383319509|ref|YP_005380350.1| - 0.084 12.3 0.1 0.15 11.5 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|383319509|ref|YP_005380350.1| - 0.085 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein APS_kinase PF01583.20 gi|383319509|ref|YP_005380350.1| - 0.096 12.6 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_33 PF13671.6 gi|383319509|ref|YP_005380350.1| - 0.12 12.5 0.1 0.78 9.9 0.1 2.1 1 1 1 2 2 2 0 AAA domain VirC1 PF07015.11 gi|383319509|ref|YP_005380350.1| - 0.13 11.6 1.7 1.3 8.3 0.8 2.1 2 0 0 2 2 2 0 VirC1 protein DUF72 PF01904.18 gi|383319510|ref|YP_005380351.1| - 1.2e-53 182.4 0.1 1.4e-53 182.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 TatC PF00902.18 gi|383319511|ref|YP_005380352.1| - 2.8e-42 144.9 22.6 3.2e-42 144.7 22.6 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Glycos_transf_1 PF00534.20 gi|383319512|ref|YP_005380353.1| - 1.2e-45 155.1 0.0 2.4e-45 154.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383319512|ref|YP_005380353.1| - 4.7e-37 127.4 0.0 1.1e-36 126.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383319512|ref|YP_005380353.1| - 8e-34 117.1 0.6 1.9e-33 115.9 0.6 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|383319512|ref|YP_005380353.1| - 7.5e-25 88.2 0.6 2.7e-23 83.2 0.1 2.5 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|383319512|ref|YP_005380353.1| - 3.2e-10 40.3 0.0 2.5e-09 37.4 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|383319512|ref|YP_005380353.1| - 2.4e-08 34.1 0.0 4.4e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|383319512|ref|YP_005380353.1| - 0.00012 21.9 0.1 0.11 12.2 0.0 2.8 1 1 1 2 2 2 2 Starch synthase catalytic domain DpaA_N PF16924.5 gi|383319512|ref|YP_005380353.1| - 0.03 14.4 0.0 0.13 12.3 0.0 2.0 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain Acetyltransf_1 PF00583.25 gi|383319513|ref|YP_005380354.1| - 5e-12 46.1 0.0 8.5e-12 45.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|383319513|ref|YP_005380354.1| - 1.4e-07 31.8 0.2 2.5e-07 31.0 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|383319513|ref|YP_005380354.1| - 9.3e-06 25.6 0.1 1.6e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|383319513|ref|YP_005380354.1| - 0.0005 20.0 0.1 0.00093 19.1 0.1 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|383319513|ref|YP_005380354.1| - 0.0011 19.1 0.0 0.0023 18.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|383319513|ref|YP_005380354.1| - 0.045 13.9 0.0 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|383319513|ref|YP_005380354.1| - 0.062 13.5 0.4 0.14 12.3 0.1 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain ERCC4 PF02732.15 gi|383319514|ref|YP_005380355.1| - 3.8e-25 88.9 0.0 2.6e-24 86.2 0.0 2.1 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 gi|383319514|ref|YP_005380355.1| - 3.2e-24 85.4 0.2 3.7e-22 78.8 0.1 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|383319514|ref|YP_005380355.1| - 1.7e-19 70.3 0.0 4.2e-19 69.0 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|383319514|ref|YP_005380355.1| - 9.8e-17 61.5 0.0 2e-16 60.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|383319514|ref|YP_005380355.1| - 3.4e-12 46.3 0.1 9.8e-12 44.8 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|383319514|ref|YP_005380355.1| - 3.1e-11 43.7 0.2 4.8e-10 39.9 0.1 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|383319514|ref|YP_005380355.1| - 1.3e-05 24.8 0.9 0.00028 20.6 0.1 3.4 4 0 0 4 4 4 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|383319514|ref|YP_005380355.1| - 0.01 16.4 3.0 0.024 15.2 0.1 3.1 3 1 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.7 gi|383319514|ref|YP_005380355.1| - 0.026 14.8 0.1 0.85 9.9 0.0 3.0 2 1 0 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|383319514|ref|YP_005380355.1| - 0.039 14.3 0.1 0.14 12.6 0.1 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix domain RNA_pol_A_CTD PF03118.15 gi|383319514|ref|YP_005380355.1| - 0.046 13.5 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain ERCC3_RAD25_C PF16203.5 gi|383319514|ref|YP_005380355.1| - 0.047 12.9 0.2 0.16 11.1 0.1 1.9 1 1 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase SWI2_SNF2 PF18766.1 gi|383319514|ref|YP_005380355.1| - 0.061 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 SWI2/SNF2 ATPase HGTP_anticodon PF03129.20 gi|383319516|ref|YP_005380357.1| - 3.5e-22 78.4 0.0 8.3e-22 77.1 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|383319516|ref|YP_005380357.1| - 1.7e-09 37.9 0.0 8.4e-09 35.6 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Zn-ribbon_8 PF09723.10 gi|383319516|ref|YP_005380357.1| - 0.14 12.3 0.2 7.9 6.7 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DUF815 PF05673.13 gi|383319518|ref|YP_005380359.1| - 0.0037 16.5 0.0 0.0044 16.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Thioredoxin_3 PF13192.6 gi|383319518|ref|YP_005380359.1| - 0.013 15.6 0.1 0.013 15.6 0.1 1.6 2 0 0 2 2 2 0 Thioredoxin domain SpoU_methylas_C PF12105.8 gi|383319518|ref|YP_005380359.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 SpoU, rRNA methylase, C-terminal Lactamase_B_2 PF12706.7 gi|383319519|ref|YP_005380360.1| - 0.014 14.9 0.1 0.024 14.1 0.1 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|383319519|ref|YP_005380360.1| - 0.13 12.3 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|383319519|ref|YP_005380360.1| - 0.13 12.3 4.0 0.43 10.6 3.6 1.9 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily GBP_PSP PF02425.15 gi|383319519|ref|YP_005380360.1| - 0.33 10.6 2.7 0.66 9.7 2.7 1.4 1 0 0 1 1 1 0 Paralytic/GBP/PSP peptide DUF99 PF01949.16 gi|383319520|ref|YP_005380361.1| - 3.9e-61 205.7 0.0 4.4e-61 205.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Endonuclease_5 PF04493.14 gi|383319520|ref|YP_005380361.1| - 0.004 16.9 0.0 0.0052 16.5 0.0 1.2 1 0 0 1 1 1 1 Endonuclease V DUF5612 PF18462.1 gi|383319520|ref|YP_005380361.1| - 0.078 12.8 0.2 0.2 11.4 0.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF5612) YhfC PF10086.9 gi|383319521|ref|YP_005380362.1| - 2.7e-27 95.6 14.1 4.5e-27 94.9 14.1 1.4 1 1 0 1 1 1 1 YhfC intramembrane metalloprotease Usp PF00582.26 gi|383319522|ref|YP_005380363.1| - 1.3e-26 93.8 0.1 1.6e-26 93.5 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family RuBisCO_large_N PF02788.16 gi|383319522|ref|YP_005380363.1| - 0.016 15.4 0.0 0.037 14.2 0.0 1.6 2 0 0 2 2 2 0 Ribulose bisphosphate carboxylase large chain, N-terminal domain Acetyltransf_3 PF13302.7 gi|383319523|ref|YP_005380364.1| - 8.4e-26 91.3 0.0 1.1e-25 90.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|383319523|ref|YP_005380364.1| - 2.8e-11 43.7 0.0 3.6e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|383319523|ref|YP_005380364.1| - 2.6e-05 24.4 0.0 3.2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|383319523|ref|YP_005380364.1| - 0.001 18.7 0.0 0.0013 18.4 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_8 PF13523.6 gi|383319523|ref|YP_005380364.1| - 0.0046 16.6 0.0 0.0083 15.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain zinc_ribbon_6 PF14599.6 gi|383319525|ref|YP_005380366.1| - 0.0099 15.9 4.0 0.068 13.2 0.4 2.1 1 1 1 2 2 2 2 Zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|383319525|ref|YP_005380366.1| - 0.22 11.5 3.1 0.28 11.1 3.1 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Aminotran_1_2 PF00155.21 gi|383319526|ref|YP_005380367.1| - 6.5e-42 144.0 0.0 8.2e-42 143.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|383319526|ref|YP_005380367.1| - 0.034 13.1 0.0 0.15 11.0 0.0 1.9 2 1 0 2 2 2 0 Aminotransferase class-V CobD_Cbib PF03186.13 gi|383319527|ref|YP_005380368.1| - 2.6e-89 299.1 0.2 3.2e-89 298.8 0.2 1.1 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.15 gi|383319528|ref|YP_005380369.1| - 3.6e-37 128.6 23.6 4.3e-37 128.3 23.6 1.1 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CbiQ PF02361.16 gi|383319528|ref|YP_005380369.1| - 1.5 8.4 11.3 0.21 11.2 3.2 2.2 2 0 0 2 2 2 0 Cobalt transport protein DUF4389 PF14333.6 gi|383319528|ref|YP_005380369.1| - 8.4 6.4 12.2 7.3 6.6 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4389) NTP_transf_3 PF12804.7 gi|383319529|ref|YP_005380370.1| - 1e-21 78.0 0.0 1.1e-21 77.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|383319529|ref|YP_005380370.1| - 8.1e-09 35.5 0.0 1.2e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|383319529|ref|YP_005380370.1| - 3.1e-07 30.6 0.0 3.7e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|383319529|ref|YP_005380370.1| - 0.00039 20.1 0.0 0.00063 19.4 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase AroM PF07302.11 gi|383319529|ref|YP_005380370.1| - 0.17 11.3 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 AroM protein DUF1743 PF08489.11 gi|383319530|ref|YP_005380371.1| - 1.4e-08 34.8 0.0 3.7e-05 23.8 0.0 3.5 2 1 0 2 2 2 2 Domain of unknown function (DUF1743) Radical_SAM PF04055.21 gi|383319531|ref|YP_005380372.1| - 4.9e-14 53.0 0.1 7.9e-14 52.4 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF2540 PF10802.8 gi|383319531|ref|YP_005380372.1| - 0.0061 16.6 0.1 0.099 12.7 0.0 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF2540) DUF5572 PF17733.1 gi|383319531|ref|YP_005380372.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5572) TssR PF17643.1 gi|383319531|ref|YP_005380372.1| - 0.14 10.0 0.0 0.17 9.8 0.0 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssR Tricorn_PDZ PF14685.6 gi|383319531|ref|YP_005380372.1| - 0.15 12.1 0.0 0.6 10.1 0.0 2.0 2 0 0 2 2 2 0 Tricorn protease PDZ domain HemN_C PF06969.16 gi|383319532|ref|YP_005380373.1| - 0.031 14.3 0.0 0.052 13.6 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain Peptidase_M48 PF01435.18 gi|383319535|ref|YP_005380376.1| - 2.4e-41 141.7 0.0 2.4e-41 141.7 0.0 1.3 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|383319535|ref|YP_005380376.1| - 2.4e-09 36.8 0.1 7.6e-09 35.2 0.0 1.7 1 1 1 2 2 2 1 BlaR1 peptidase M56 BSP PF04450.12 gi|383319535|ref|YP_005380376.1| - 0.0057 16.5 0.0 0.008 16.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase of plants and bacteria SprT-like PF10263.9 gi|383319535|ref|YP_005380376.1| - 0.069 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 SprT-like family FWWh PF14922.6 gi|383319535|ref|YP_005380376.1| - 0.14 12.1 0.1 0.22 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function SUR7 PF06687.12 gi|383319535|ref|YP_005380376.1| - 0.23 11.1 4.5 0.22 11.2 0.2 2.1 2 0 0 2 2 2 0 SUR7/PalI family AA_permease_2 PF13520.6 gi|383319535|ref|YP_005380376.1| - 1.6 7.5 15.5 0.014 14.2 3.3 2.1 2 0 0 2 2 2 0 Amino acid permease DUF2207 PF09972.9 gi|383319535|ref|YP_005380376.1| - 4.3 6.0 6.6 13 4.4 2.7 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) PRRSV_2b PF07069.11 gi|383319535|ref|YP_005380376.1| - 6.2 7.4 10.8 0.88 10.1 1.0 2.5 2 0 0 2 2 2 0 Porcine reproductive and respiratory syndrome virus 2b MgtE PF01769.16 gi|383319535|ref|YP_005380376.1| - 8 6.9 12.7 0.56 10.6 0.9 2.3 2 0 0 2 2 2 0 Divalent cation transporter CorA PF01544.18 gi|383319536|ref|YP_005380377.1| - 7.7e-45 153.4 5.2 9.7e-45 153.1 5.2 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein RepB PF07506.11 gi|383319536|ref|YP_005380377.1| - 0.0001 22.4 0.0 0.012 15.8 0.0 2.6 2 1 1 3 3 3 1 RepB plasmid partitioning protein DUF273 PF03314.14 gi|383319536|ref|YP_005380377.1| - 0.045 13.3 0.2 0.14 11.7 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF273 UPF0175 PF03683.13 gi|383319536|ref|YP_005380377.1| - 0.057 13.1 0.2 0.17 11.6 0.1 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) Rpn3_C PF08375.11 gi|383319536|ref|YP_005380377.1| - 0.084 13.3 0.1 0.29 11.6 0.1 2.0 1 1 0 1 1 1 0 Proteasome regulatory subunit C-terminal Cortex-I_coil PF09304.10 gi|383319536|ref|YP_005380377.1| - 0.094 12.9 1.0 0.25 11.6 1.0 1.6 1 0 0 1 1 1 0 Cortexillin I, coiled coil NPCBM_assoc PF10633.9 gi|383319537|ref|YP_005380378.1| - 1.1e-18 67.3 10.6 8.1e-17 61.2 1.4 4.1 4 0 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.8 gi|383319537|ref|YP_005380378.1| - 5.1e-10 39.6 1.0 0.061 13.5 0.2 3.6 2 1 0 3 3 3 3 IG-like fold at C-terminal of FixG, putative oxidoreductase CARDB PF07705.11 gi|383319537|ref|YP_005380378.1| - 0.00069 19.8 5.5 0.0008 19.6 1.1 3.0 3 1 0 3 3 3 1 CARDB DUF4625 PF15418.6 gi|383319537|ref|YP_005380378.1| - 0.01 16.0 0.0 2.5 8.4 0.0 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4625) fn3_5 PF06280.12 gi|383319537|ref|YP_005380378.1| - 0.013 16.2 7.7 9.6 6.9 0.5 5.0 4 2 0 4 4 3 0 Fn3-like domain Alpha_adaptinC2 PF02883.20 gi|383319537|ref|YP_005380378.1| - 0.014 15.7 0.2 0.046 14.0 0.1 2.0 2 0 0 2 2 2 0 Adaptin C-terminal domain DUF4832 PF16116.5 gi|383319537|ref|YP_005380378.1| - 0.023 14.5 0.1 0.048 13.5 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4832) DUF756 PF05506.12 gi|383319537|ref|YP_005380378.1| - 0.037 15.0 1.2 3.8 8.5 0.6 3.4 2 1 0 2 2 2 0 Domain of unknown function (DUF756) BACON PF13004.7 gi|383319537|ref|YP_005380378.1| - 0.048 13.6 0.8 0.17 11.9 0.8 2.0 1 0 0 1 1 1 0 Putative binding domain, N-terminal DUF11 PF01345.18 gi|383319537|ref|YP_005380378.1| - 0.056 13.7 5.5 0.61 10.4 1.9 3.9 2 1 0 3 3 3 0 Domain of unknown function DUF11 Orthoreo_P10 PF07204.11 gi|383319537|ref|YP_005380378.1| - 0.11 12.5 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 Orthoreovirus membrane fusion protein p10 He_PIG PF05345.12 gi|383319537|ref|YP_005380378.1| - 0.11 12.7 2.3 0.36 11.1 0.3 2.7 2 0 0 2 2 2 0 Putative Ig domain Calx-beta PF03160.14 gi|383319537|ref|YP_005380378.1| - 0.24 11.6 1.8 34 4.7 0.2 3.3 3 0 0 3 3 3 0 Calx-beta domain ABC2_membrane_2 PF12679.7 gi|383319538|ref|YP_005380379.1| - 2e-52 178.3 8.6 2.3e-52 178.1 8.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319538|ref|YP_005380379.1| - 1.7e-09 37.9 14.1 1.7e-09 37.9 14.1 2.0 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319538|ref|YP_005380379.1| - 8.1e-09 35.0 13.9 8.1e-09 35.0 13.9 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383319538|ref|YP_005380379.1| - 5.6e-06 26.1 18.5 6.7e-06 25.8 17.1 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|383319538|ref|YP_005380379.1| - 4.1e-05 23.1 16.5 4.1e-05 23.1 16.5 2.2 3 0 0 3 3 3 1 ABC-2 type transporter DUF2371 PF10177.9 gi|383319538|ref|YP_005380379.1| - 0.12 12.6 4.3 0.14 12.3 0.0 2.7 3 0 0 3 3 3 0 Uncharacterised conserved protein (DUF2371) Halogen_Hydrol PF10112.9 gi|383319538|ref|YP_005380379.1| - 0.13 12.3 0.3 0.13 12.3 0.3 2.9 2 1 1 3 3 3 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF2730 PF10805.8 gi|383319538|ref|YP_005380379.1| - 0.34 11.0 1.0 1 9.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DUF4407 PF14362.6 gi|383319538|ref|YP_005380379.1| - 1.4 8.2 0.0 1.4 8.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) DUF4131 PF13567.6 gi|383319538|ref|YP_005380379.1| - 1.6 8.3 5.6 3 7.5 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ABC_tran PF00005.27 gi|383319539|ref|YP_005380380.1| - 9.9e-27 94.1 0.0 2.4e-26 92.9 0.0 1.6 2 1 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|383319539|ref|YP_005380380.1| - 9.2e-12 45.4 0.2 3e-08 33.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|383319539|ref|YP_005380380.1| - 5.3e-08 33.5 0.3 1.2e-07 32.4 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SRP54 PF00448.22 gi|383319539|ref|YP_005380380.1| - 0.013 15.1 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|383319539|ref|YP_005380380.1| - 0.015 15.0 0.0 5 6.7 0.1 2.3 1 1 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|383319539|ref|YP_005380380.1| - 0.04 14.4 1.4 0.061 13.8 0.2 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|383319539|ref|YP_005380380.1| - 0.09 12.5 0.1 0.2 11.4 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|383319539|ref|YP_005380380.1| - 0.16 12.4 0.5 2.7 8.4 0.1 2.6 1 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DHODB_Fe-S_bind PF10418.9 gi|383319540|ref|YP_005380381.1| - 4.7e-14 51.9 7.5 7.2e-13 48.1 3.7 2.4 2 0 0 2 2 2 2 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|383319540|ref|YP_005380381.1| - 9.1e-06 26.0 0.0 4.1e-05 23.9 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase FAD-binding domain NAD_binding_1 PF00175.21 gi|383319540|ref|YP_005380381.1| - 0.0081 16.8 0.0 0.017 15.7 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2_3 PF13085.6 gi|383319540|ref|YP_005380381.1| - 0.04 13.9 0.7 0.077 13.0 0.7 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain NAD_binding_6 PF08030.12 gi|383319540|ref|YP_005380381.1| - 0.042 14.0 0.0 0.062 13.4 0.0 1.3 1 0 0 1 1 1 0 Ferric reductase NAD binding domain Fer4_20 PF14691.6 gi|383319541|ref|YP_005380382.1| - 3.1e-43 146.2 2.8 5e-43 145.5 2.8 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|383319541|ref|YP_005380382.1| - 1.4e-35 122.9 1.0 2.1e-35 122.4 1.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|383319541|ref|YP_005380382.1| - 3.5e-15 56.3 4.1 1.1e-07 32.3 0.2 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|383319541|ref|YP_005380382.1| - 1.5e-09 37.5 0.8 4.6e-05 22.8 0.0 3.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|383319541|ref|YP_005380382.1| - 6.3e-09 35.4 0.3 0.0012 18.2 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|383319541|ref|YP_005380382.1| - 1e-08 35.3 1.8 4.8e-08 33.1 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|383319541|ref|YP_005380382.1| - 1.1e-06 28.3 4.3 6.7e-05 22.4 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|383319541|ref|YP_005380382.1| - 1.9e-06 28.2 0.5 0.0083 16.5 0.0 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding GIDA PF01134.22 gi|383319541|ref|YP_005380382.1| - 7.6e-06 25.2 3.3 0.00024 20.3 0.1 2.7 3 0 0 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|383319541|ref|YP_005380382.1| - 2e-05 24.0 0.8 5e-05 22.7 0.1 1.9 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|383319541|ref|YP_005380382.1| - 3.1e-05 23.2 2.5 0.00025 20.3 1.2 2.2 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|383319541|ref|YP_005380382.1| - 5.2e-05 22.1 2.8 9.9e-05 21.2 0.3 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|383319541|ref|YP_005380382.1| - 6.4e-05 22.4 0.3 0.00058 19.2 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|383319541|ref|YP_005380382.1| - 0.00012 21.5 0.1 0.12 11.8 0.0 2.3 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|383319541|ref|YP_005380382.1| - 0.0016 18.1 0.5 0.0016 18.1 0.5 3.1 2 1 0 3 3 3 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|383319541|ref|YP_005380382.1| - 0.006 15.9 0.1 0.006 15.9 0.1 2.1 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase PALP PF00291.25 gi|383319541|ref|YP_005380382.1| - 0.0067 15.9 0.0 2.2 7.6 0.0 2.4 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme PrpR_N PF06506.11 gi|383319541|ref|YP_005380382.1| - 0.02 14.5 1.2 8.4 5.9 0.0 3.9 4 0 0 4 4 4 0 Propionate catabolism activator NAD_binding_9 PF13454.6 gi|383319541|ref|YP_005380382.1| - 0.029 14.4 0.3 0.39 10.7 0.3 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|383319541|ref|YP_005380382.1| - 0.038 13.1 0.3 0.088 11.8 0.3 1.6 1 0 0 1 1 1 0 Lycopene cyclase protein ELFV_dehydrog PF00208.21 gi|383319541|ref|YP_005380382.1| - 0.039 13.7 0.0 1.8 8.3 0.0 2.4 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XdhC_C PF13478.6 gi|383319541|ref|YP_005380382.1| - 0.044 14.3 0.2 1.6 9.2 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain Oxidored_nitro PF00148.19 gi|383319541|ref|YP_005380382.1| - 0.06 12.1 0.1 0.17 10.6 0.0 1.7 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase 3HCDH_N PF02737.18 gi|383319541|ref|YP_005380382.1| - 0.062 13.2 0.6 0.74 9.7 0.2 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FMO-like PF00743.19 gi|383319541|ref|YP_005380382.1| - 0.075 11.4 0.0 0.84 8.0 0.0 2.0 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like K_oxygenase PF13434.6 gi|383319541|ref|YP_005380382.1| - 0.13 11.4 0.0 9.1 5.3 0.0 2.5 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) YjeF_N PF03853.15 gi|383319541|ref|YP_005380382.1| - 0.13 12.2 0.1 7.6 6.4 0.0 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus Trp_halogenase PF04820.14 gi|383319541|ref|YP_005380382.1| - 0.73 8.6 2.9 0.52 9.1 0.5 1.8 2 0 0 2 2 2 0 Tryptophan halogenase DUF1724 PF08350.10 gi|383319542|ref|YP_005380383.1| - 1.3e-19 70.1 0.0 2.7e-19 69.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) PPC PF04151.15 gi|383319543|ref|YP_005380384.1| - 0.29 12.2 11.5 0.096 13.8 3.4 3.4 3 0 0 3 3 3 0 Bacterial pre-peptidase C-terminal domain DUF5013 PF16405.5 gi|383319543|ref|YP_005380384.1| - 0.52 10.6 4.0 0.2 12.0 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5013) Chi-conotoxin PF16981.5 gi|383319545|ref|YP_005380386.1| - 0.024 14.9 0.2 0.028 14.7 0.2 1.0 1 0 0 1 1 1 0 chi-Conotoxin or t superfamily ABC_tran PF00005.27 gi|383319547|ref|YP_005380388.1| - 2.1e-28 99.6 0.0 3.4e-28 98.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383319547|ref|YP_005380388.1| - 8.1e-10 39.0 0.0 3.3e-06 27.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|383319547|ref|YP_005380388.1| - 4.8e-09 36.8 0.0 9.3e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SRP54 PF00448.22 gi|383319547|ref|YP_005380388.1| - 0.025 14.2 0.2 0.042 13.5 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|383319547|ref|YP_005380388.1| - 0.033 13.9 0.7 0.063 13.0 0.7 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|383319547|ref|YP_005380388.1| - 0.047 13.4 0.1 0.12 12.2 0.1 1.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA PF00004.29 gi|383319547|ref|YP_005380388.1| - 0.12 12.8 0.9 1.1 9.6 0.9 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|383319547|ref|YP_005380388.1| - 0.13 12.8 0.5 0.23 11.9 0.5 1.3 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|383319547|ref|YP_005380388.1| - 0.25 10.8 0.8 2 7.9 0.1 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region ABC2_membrane_2 PF12679.7 gi|383319548|ref|YP_005380389.1| - 2.7e-49 168.0 20.3 3.7e-49 167.6 20.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383319548|ref|YP_005380389.1| - 1.2e-08 34.8 15.9 1.2e-08 34.8 15.9 2.6 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319548|ref|YP_005380389.1| - 1.8e-07 30.6 25.1 8.1e-07 28.5 25.1 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|383319548|ref|YP_005380389.1| - 8.6e-05 22.1 21.3 8.6e-05 22.1 21.3 3.0 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|383319548|ref|YP_005380389.1| - 0.00014 21.9 15.0 0.00014 21.9 15.0 3.0 3 1 1 4 4 4 1 ABC-2 family transporter protein COX7a PF02238.15 gi|383319548|ref|YP_005380389.1| - 1.2 9.6 0.0 1.2 9.6 0.0 4.3 7 0 0 7 7 7 0 Cytochrome c oxidase subunit VII HATPase_c PF02518.26 gi|383319549|ref|YP_005380390.1| - 1.2e-15 58.0 0.0 2.3e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|383319549|ref|YP_005380390.1| - 2e-09 37.6 0.0 0.00066 19.9 0.0 2.7 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|383319549|ref|YP_005380390.1| - 1.6e-06 28.3 0.0 3.9e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|383319549|ref|YP_005380390.1| - 0.00012 22.0 0.0 0.00042 20.3 0.0 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|383319549|ref|YP_005380390.1| - 0.0054 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|383319549|ref|YP_005380390.1| - 0.0095 16.1 0.0 3.5 7.8 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|383319549|ref|YP_005380390.1| - 0.055 13.5 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 PAS domain PAS_10 PF13596.6 gi|383319549|ref|YP_005380390.1| - 0.094 13.3 0.0 4.8 7.8 0.0 2.5 2 0 0 2 2 2 0 PAS domain OmpH PF03938.14 gi|383319549|ref|YP_005380390.1| - 0.097 13.0 0.2 0.19 12.1 0.1 1.6 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) PQQ_2 PF13360.6 gi|383319550|ref|YP_005380391.1| - 2.6e-18 66.5 1.1 2e-11 43.9 0.3 2.4 1 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|383319550|ref|YP_005380391.1| - 1.6e-17 63.4 9.9 0.00019 21.8 0.0 7.1 8 0 0 8 8 8 4 PQQ-like domain WD40 PF00400.32 gi|383319550|ref|YP_005380391.1| - 2.3e-11 44.0 8.3 0.19 12.6 0.0 6.9 7 0 0 7 7 7 3 WD domain, G-beta repeat ANAPC4_WD40 PF12894.7 gi|383319550|ref|YP_005380391.1| - 6.6e-09 35.9 0.0 0.073 13.4 0.0 4.6 2 2 3 5 5 5 4 Anaphase-promoting complex subunit 4 WD40 domain PQQ PF01011.21 gi|383319550|ref|YP_005380391.1| - 4e-08 32.8 3.3 0.099 12.6 0.0 5.8 6 1 1 7 7 7 3 PQQ enzyme repeat RAB3GAP2_N PF14655.6 gi|383319550|ref|YP_005380391.1| - 1.3e-07 31.2 0.0 0.0078 15.5 0.0 2.9 1 1 1 3 3 3 2 Rab3 GTPase-activating protein regulatory subunit N-terminus BBS2_Mid PF14783.6 gi|383319550|ref|YP_005380391.1| - 0.00037 20.5 0.0 2.7 8.1 0.0 4.0 2 1 2 4 4 4 1 Ciliary BBSome complex subunit 2, middle region Coatomer_WDAD PF04053.14 gi|383319550|ref|YP_005380391.1| - 0.0024 17.0 0.1 0.038 13.0 0.1 2.2 1 1 1 2 2 2 2 Coatomer WD associated region Mcl1_mid PF12341.8 gi|383319550|ref|YP_005380391.1| - 0.0026 17.1 0.0 0.0087 15.4 0.0 1.8 1 1 1 2 2 2 1 Minichromosome loss protein, Mcl1, middle region DUF4221 PF13970.6 gi|383319550|ref|YP_005380391.1| - 0.0065 16.1 0.0 0.26 10.8 0.0 2.7 1 1 2 3 3 3 1 Domain of unknown function (DUF4221) Antig_Caf1 PF09255.10 gi|383319550|ref|YP_005380391.1| - 0.0081 16.3 1.0 0.062 13.4 0.4 2.5 1 1 1 2 2 2 1 Caf1 Capsule antigen Ge1_WD40 PF16529.5 gi|383319550|ref|YP_005380391.1| - 0.013 14.5 0.6 2.5 7.0 0.0 3.3 1 1 3 4 4 4 0 WD40 region of Ge1, enhancer of mRNA-decapping protein DUF5050 PF16472.5 gi|383319550|ref|YP_005380391.1| - 0.027 13.7 0.1 0.086 12.1 0.0 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF5050) zinc_ribbon_2 PF13240.6 gi|383319550|ref|YP_005380391.1| - 0.052 13.3 1.0 0.099 12.4 1.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|383319550|ref|YP_005380391.1| - 0.39 10.2 3.7 0.43 10.0 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Acetyltransf_3 PF13302.7 gi|383319551|ref|YP_005380392.1| - 1.9e-22 80.5 0.3 2.4e-22 80.1 0.3 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|383319551|ref|YP_005380392.1| - 3.2e-16 59.6 0.3 4.3e-16 59.2 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|383319551|ref|YP_005380392.1| - 1.3e-11 44.4 0.0 2.6e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|383319551|ref|YP_005380392.1| - 1.8e-05 24.9 0.0 2.4e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|383319551|ref|YP_005380392.1| - 6.6e-05 22.8 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|383319551|ref|YP_005380392.1| - 0.00034 21.0 0.1 0.00059 20.2 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|383319551|ref|YP_005380392.1| - 0.032 13.8 0.0 0.042 13.4 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase CRISPR_Cas6 PF10040.9 gi|383319552|ref|YP_005380393.1| - 0.026 15.2 1.0 7.5 7.3 0.1 2.5 2 0 0 2 2 2 0 CRISPR-associated endoribonuclease Cas6 Keratin PF02422.16 gi|383319552|ref|YP_005380393.1| - 0.73 9.6 7.7 1 9.1 2.9 2.2 1 1 1 2 2 2 0 Keratin UPF0126 PF03458.13 gi|383319553|ref|YP_005380394.1| - 7.2e-42 141.2 28.7 3.3e-23 81.4 11.5 2.4 3 0 0 3 3 3 2 UPF0126 domain PolyA_pol PF01743.20 gi|383319553|ref|YP_005380394.1| - 0.12 12.8 0.0 18 5.8 0.0 2.2 2 0 0 2 2 2 0 Poly A polymerase head domain E2_bind PF08825.10 gi|383319554|ref|YP_005380395.1| - 0.052 13.7 0.0 0.054 13.6 0.0 1.0 1 0 0 1 1 1 0 E2 binding domain Peptidase_M20 PF01546.28 gi|383319556|ref|YP_005380397.1| - 3.9e-33 114.9 0.0 5.5e-33 114.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|383319556|ref|YP_005380397.1| - 9.5e-19 67.3 0.0 1.5e-18 66.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain RNase_H_2 PF13482.6 gi|383319557|ref|YP_005380398.1| - 2.8e-34 118.5 0.0 4e-34 118.0 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|383319557|ref|YP_005380398.1| - 1.8e-05 24.5 0.0 5.5e-05 23.0 0.0 1.7 1 1 1 2 2 2 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_exo1 PF03104.19 gi|383319557|ref|YP_005380398.1| - 0.0055 15.9 0.0 0.0087 15.2 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain TfoX_C PF04994.13 gi|383319557|ref|YP_005380398.1| - 0.0069 16.4 0.0 2 8.6 0.0 2.4 2 0 0 2 2 2 2 TfoX C-terminal domain HHH_5 PF14520.6 gi|383319557|ref|YP_005380398.1| - 0.11 13.1 0.0 0.53 10.9 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain DEAD PF00270.29 gi|383319558|ref|YP_005380399.1| - 8.1e-29 100.6 0.0 3.3e-28 98.6 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|383319558|ref|YP_005380399.1| - 2.9e-23 82.4 0.3 7.3e-23 81.1 0.3 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|383319558|ref|YP_005380399.1| - 3.4e-10 40.2 0.0 1.1e-09 38.6 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|383319558|ref|YP_005380399.1| - 2.1e-05 24.6 0.0 3.3e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit MutS_V PF00488.21 gi|383319559|ref|YP_005380400.1| - 4.5e-10 39.9 0.4 8.6e-10 38.9 0.4 1.4 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|383319559|ref|YP_005380400.1| - 3.9e-07 30.6 1.7 1.3e-06 28.9 0.1 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|383319559|ref|YP_005380400.1| - 0.00025 21.6 0.2 0.81 10.3 0.0 3.9 1 1 1 2 2 2 2 5'-3' exonuclease, C-terminal SAM fold HHH PF00633.23 gi|383319559|ref|YP_005380400.1| - 0.00058 19.6 0.1 0.76 9.8 0.1 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|383319559|ref|YP_005380400.1| - 0.0018 18.3 0.1 0.0057 16.7 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif AAA PF00004.29 gi|383319559|ref|YP_005380400.1| - 0.0041 17.6 1.1 0.013 15.9 0.1 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|383319559|ref|YP_005380400.1| - 0.095 12.9 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Acetyltransf_1 PF00583.25 gi|383319560|ref|YP_005380401.1| - 6.5e-19 68.3 0.1 8.7e-19 67.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|383319560|ref|YP_005380401.1| - 1.5e-17 63.7 0.1 1.8e-17 63.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|383319560|ref|YP_005380401.1| - 1.1e-10 41.8 0.1 1.6e-10 41.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|383319560|ref|YP_005380401.1| - 2.6e-10 40.1 0.0 4.1e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|383319560|ref|YP_005380401.1| - 1.6e-06 28.4 0.1 2e-06 28.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|383319560|ref|YP_005380401.1| - 3.1e-06 27.0 0.0 7.7e-06 25.7 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|383319560|ref|YP_005380401.1| - 1.7e-05 24.9 0.0 4.8e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|383319560|ref|YP_005380401.1| - 6.2e-05 23.7 0.0 0.00011 22.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|383319560|ref|YP_005380401.1| - 0.0024 18.0 0.1 0.0031 17.7 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|383319560|ref|YP_005380401.1| - 0.006 16.7 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 gi|383319560|ref|YP_005380401.1| - 0.0074 15.8 0.1 0.019 14.4 0.1 1.8 1 1 0 1 1 1 1 Putative acetyl-transferase GNAT_acetyltran PF12746.7 gi|383319560|ref|YP_005380401.1| - 0.074 12.6 0.0 0.14 11.7 0.0 1.4 2 0 0 2 2 2 0 GNAT acetyltransferase Peptidase_M50B PF13398.6 gi|383319561|ref|YP_005380402.1| - 0.00039 20.1 7.2 0.0024 17.5 3.4 2.2 1 1 1 2 2 2 2 Peptidase M50B-like Antirestrict PF03230.13 gi|383319561|ref|YP_005380402.1| - 0.05 13.7 0.2 0.093 12.8 0.1 1.6 1 1 0 1 1 1 0 Antirestriction protein RHH_1 PF01402.21 gi|383319562|ref|YP_005380403.1| - 0.031 14.2 1.9 0.27 11.3 0.4 2.5 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family TPR_20 PF14561.6 gi|383319562|ref|YP_005380403.1| - 0.058 13.7 0.1 0.065 13.6 0.1 1.0 1 0 0 1 1 1 0 Tetratricopeptide repeat QueC PF06508.13 gi|383319563|ref|YP_005380404.1| - 9.4e-57 191.9 0.0 1.1e-56 191.7 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|383319563|ref|YP_005380404.1| - 0.003 17.2 0.0 0.52 9.9 0.0 2.2 2 0 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.17 gi|383319563|ref|YP_005380404.1| - 0.024 13.8 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 NAD synthase ATP_bind_3 PF01171.20 gi|383319563|ref|YP_005380404.1| - 0.027 14.2 0.0 0.04 13.7 0.0 1.2 1 0 0 1 1 1 0 PP-loop family tRNA_Me_trans PF03054.16 gi|383319563|ref|YP_005380404.1| - 0.028 13.2 0.0 0.043 12.6 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase Asn_synthase PF00733.21 gi|383319563|ref|YP_005380404.1| - 0.04 13.6 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase HAT PF02184.16 gi|383319563|ref|YP_005380404.1| - 0.16 12.0 1.3 0.22 11.5 0.1 1.8 2 0 0 2 2 2 0 HAT (Half-A-TPR) repeat DUF366 PF04017.12 gi|383319564|ref|YP_005380405.1| - 2.3e-71 239.1 0.0 2.5e-71 238.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) Fer4_14 PF13394.6 gi|383319565|ref|YP_005380406.1| - 3.8e-12 46.4 0.0 7.2e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|383319565|ref|YP_005380406.1| - 2.9e-10 40.8 0.1 5.8e-10 39.8 0.1 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|383319565|ref|YP_005380406.1| - 7e-09 36.1 0.0 1e-08 35.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.19 gi|383319566|ref|YP_005380407.1| - 2.2e-26 92.2 0.0 2.8e-26 91.9 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF2939 PF11159.8 gi|383319566|ref|YP_005380407.1| - 0.15 12.5 0.0 0.2 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2939) DUF1495 PF07381.11 gi|383319567|ref|YP_005380408.1| - 7.8e-13 48.1 0.1 9e-13 47.9 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) ABC2_membrane_2 PF12679.7 gi|383319569|ref|YP_005380410.1| - 7e-19 68.2 29.3 3.8e-18 65.8 29.3 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383319570|ref|YP_005380411.1| - 6.4e-17 61.8 23.3 4.5e-16 59.0 23.3 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319570|ref|YP_005380411.1| - 2.9e-08 33.9 17.8 9.7e-08 32.2 15.8 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319570|ref|YP_005380411.1| - 0.00045 19.4 27.3 0.00045 19.4 27.3 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein Na_Ca_ex PF01699.24 gi|383319570|ref|YP_005380411.1| - 5.3 7.0 34.5 0.81 9.6 18.1 3.0 2 1 1 3 3 3 0 Sodium/calcium exchanger protein ABC2_membrane_2 PF12679.7 gi|383319572|ref|YP_005380413.1| - 2.6e-18 66.3 28.0 1.1e-17 64.3 28.0 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319572|ref|YP_005380413.1| - 0.00069 19.6 16.8 0.00069 19.6 16.8 2.3 1 1 0 2 2 2 1 ABC-2 family transporter protein DUF2367 PF10164.9 gi|383319572|ref|YP_005380413.1| - 0.13 12.8 0.7 0.26 11.8 0.7 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2367) ABC2_membrane_2 PF12679.7 gi|383319573|ref|YP_005380414.1| - 6.9e-16 58.4 18.4 5.2e-15 55.5 18.4 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383319573|ref|YP_005380414.1| - 1.4e-05 24.7 20.2 1.4e-05 24.7 20.2 2.6 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319573|ref|YP_005380414.1| - 2e-05 24.6 12.7 3e-05 24.1 12.0 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319573|ref|YP_005380414.1| - 0.71 8.9 30.3 0.15 11.2 26.5 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein RCC1 PF00415.18 gi|383319574|ref|YP_005380415.1| - 2.8e-46 155.9 33.9 2.4e-10 40.9 0.2 9.3 9 1 0 9 9 9 6 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383319574|ref|YP_005380415.1| - 3.4e-40 135.1 43.5 6.5e-08 32.2 1.4 7.7 8 0 0 8 8 8 7 Regulator of chromosome condensation (RCC1) repeat ABC2_membrane_2 PF12679.7 gi|383319575|ref|YP_005380416.1| - 4.1e-17 62.4 29.5 7.3e-16 58.3 29.5 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383319576|ref|YP_005380417.1| - 6.8e-15 55.1 22.7 4.1e-14 52.6 22.7 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383319576|ref|YP_005380417.1| - 1.3e-07 31.7 15.4 6.4e-06 26.2 12.1 2.2 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383319576|ref|YP_005380417.1| - 0.07 12.2 31.8 0.011 14.9 27.8 1.6 1 1 1 2 2 2 0 ABC-2 family transporter protein RHD3 PF05879.12 gi|383319576|ref|YP_005380417.1| - 0.13 10.4 0.5 0.18 9.9 0.5 1.2 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) RCC1_2 PF13540.6 gi|383319577|ref|YP_005380418.1| - 2.5e-27 94.1 48.0 1.3e-06 28.0 0.1 7.7 7 1 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat RCC1 PF00415.18 gi|383319577|ref|YP_005380418.1| - 2.9e-19 69.4 48.2 1.2e-08 35.4 1.4 9.5 9 3 0 9 9 9 4 Regulator of chromosome condensation (RCC1) repeat PhoU PF01895.19 gi|383319578|ref|YP_005380419.1| - 1.4e-32 112.0 8.9 2.2e-17 63.3 1.2 2.2 2 0 0 2 2 2 2 PhoU domain Msg2_C PF12373.8 gi|383319578|ref|YP_005380419.1| - 0.11 12.0 0.7 5.2 6.6 0.1 2.7 2 0 0 2 2 2 0 Major surface glycoprotein 2 C terminal HAD_2 PF13419.6 gi|383319579|ref|YP_005380420.1| - 7.4e-23 81.5 0.0 1e-22 81.1 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|383319579|ref|YP_005380420.1| - 9.2e-09 35.2 0.0 1.8e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|383319579|ref|YP_005380420.1| - 1.7e-08 35.0 0.0 3.3e-08 34.1 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase GTA_TIM PF13547.6 gi|383319579|ref|YP_005380420.1| - 0.16 11.2 0.9 0.21 10.9 0.9 1.1 1 0 0 1 1 1 0 GTA TIM-barrel-like domain APH PF01636.23 gi|383319580|ref|YP_005380421.1| - 1.3e-12 48.1 0.0 3.1e-12 46.9 0.0 1.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|383319580|ref|YP_005380421.1| - 1.3e-05 24.9 0.0 2.2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Choline/ethanolamine kinase RIO1 PF01163.22 gi|383319580|ref|YP_005380421.1| - 0.0036 16.9 0.1 0.0093 15.6 0.0 1.6 2 0 0 2 2 2 1 RIO1 family DUF1679 PF07914.11 gi|383319580|ref|YP_005380421.1| - 0.064 12.1 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) Pkinase PF00069.25 gi|383319580|ref|YP_005380421.1| - 0.11 11.8 0.0 11 5.3 0.0 2.1 2 0 0 2 2 2 0 Protein kinase domain PspA_IM30 PF04012.12 gi|383319581|ref|YP_005380422.1| - 3.3e-19 69.4 26.3 3.9e-19 69.1 26.3 1.1 1 0 0 1 1 1 1 PspA/IM30 family DUF1664 PF07889.12 gi|383319581|ref|YP_005380422.1| - 0.017 15.1 3.7 0.017 15.1 3.7 3.2 1 1 1 3 3 3 0 Protein of unknown function (DUF1664) Flagellin_C PF00700.21 gi|383319581|ref|YP_005380422.1| - 0.018 15.4 11.4 0.031 14.6 0.5 3.6 1 1 1 3 3 3 0 Bacterial flagellin C-terminal helical region AAA_13 PF13166.6 gi|383319581|ref|YP_005380422.1| - 0.073 11.7 15.3 0.092 11.4 15.3 1.1 1 0 0 1 1 1 0 AAA domain Baculo_PEP_C PF04513.12 gi|383319581|ref|YP_005380422.1| - 0.1 12.7 9.7 5.1 7.1 0.9 3.4 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 gi|383319581|ref|YP_005380422.1| - 0.12 12.7 12.1 0.11 12.9 3.1 3.0 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 gi|383319581|ref|YP_005380422.1| - 0.32 11.3 6.4 6.1 7.2 0.5 3.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Prominin PF05478.11 gi|383319581|ref|YP_005380422.1| - 0.41 8.5 4.7 0.25 9.2 2.9 1.5 1 1 0 1 1 1 0 Prominin GCN5L1 PF06320.13 gi|383319581|ref|YP_005380422.1| - 0.8 9.9 14.4 0.74 10.0 0.3 3.2 2 1 1 3 3 3 0 GCN5-like protein 1 (GCN5L1) DUF5082 PF16888.5 gi|383319581|ref|YP_005380422.1| - 0.86 9.9 11.1 0.38 11.1 3.9 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF5082) YabA PF06156.13 gi|383319581|ref|YP_005380422.1| - 0.87 10.3 13.0 0.61 10.8 1.4 3.2 1 1 2 3 3 3 0 Initiation control protein YabA MbeD_MobD PF04899.12 gi|383319581|ref|YP_005380422.1| - 0.92 9.7 4.6 0.84 9.8 0.2 2.6 2 1 0 2 2 2 0 MbeD/MobD like NPV_P10 PF05531.12 gi|383319581|ref|YP_005380422.1| - 1.1 9.8 6.4 4 8.0 1.0 3.1 1 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Fungal_TACC PF12709.7 gi|383319581|ref|YP_005380422.1| - 1.7 9.1 9.3 4 8.0 0.9 3.6 3 0 0 3 3 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins NolV PF06635.12 gi|383319581|ref|YP_005380422.1| - 2.8 7.3 9.9 0.44 9.9 0.2 2.1 1 1 1 2 2 2 0 Nodulation protein NolV LPP PF04728.13 gi|383319581|ref|YP_005380422.1| - 2.8 8.4 8.9 0.46 10.9 0.5 3.5 4 0 0 4 4 4 0 Lipoprotein leucine-zipper HALZ PF02183.18 gi|383319581|ref|YP_005380422.1| - 3.5 7.9 12.6 0.69 10.2 0.9 3.6 3 1 0 3 3 3 0 Homeobox associated leucine zipper FAM76 PF16046.5 gi|383319581|ref|YP_005380422.1| - 6.5 6.0 9.2 4.5 6.5 7.8 1.5 1 1 0 1 1 1 0 FAM76 protein COG2 PF06148.11 gi|383319581|ref|YP_005380422.1| - 7.2 6.7 13.4 1.4 9.0 2.2 3.3 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DivIC PF04977.15 gi|383319581|ref|YP_005380422.1| - 8.1 6.3 23.9 0.066 13.0 3.6 4.0 3 1 1 4 4 4 0 Septum formation initiator E2F_CC-MB PF16421.5 gi|383319581|ref|YP_005380422.1| - 9.1 6.7 10.0 2.9 8.3 0.6 3.1 3 2 1 4 4 4 0 E2F transcription factor CC-MB domain Na_Ca_ex PF01699.24 gi|383319583|ref|YP_005380424.1| - 2.8e-33 115.0 40.8 2e-17 63.6 18.7 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein PT PF04886.12 gi|383319584|ref|YP_005380425.1| - 0.024 14.2 25.0 0.64 9.6 22.2 3.4 2 1 0 2 2 2 0 PT repeat TPR_1 PF00515.28 gi|383319585|ref|YP_005380426.1| - 9.3e-24 82.2 16.3 1.2e-07 31.2 0.4 6.8 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|383319585|ref|YP_005380426.1| - 1.3e-19 68.6 18.6 0.00065 19.6 0.1 7.4 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_12 PF13424.6 gi|383319585|ref|YP_005380426.1| - 5e-18 65.2 20.8 2.2e-10 40.6 0.9 5.5 5 1 1 6 6 6 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|383319585|ref|YP_005380426.1| - 1.5e-13 49.8 18.1 0.0003 20.8 0.3 6.7 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383319585|ref|YP_005380426.1| - 7.5e-11 41.3 13.0 2.9e-05 23.8 0.0 6.7 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|383319585|ref|YP_005380426.1| - 8.2e-11 42.4 9.5 0.00055 20.5 0.0 5.4 5 1 1 6 6 5 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|383319585|ref|YP_005380426.1| - 1e-07 31.6 16.4 0.02 14.8 0.0 6.2 7 0 0 7 7 6 3 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|383319585|ref|YP_005380426.1| - 3.8e-06 26.5 1.2 0.15 11.4 0.0 3.5 1 1 3 4 4 4 3 MalT-like TPR region TPR_19 PF14559.6 gi|383319585|ref|YP_005380426.1| - 6.7e-06 26.5 14.9 0.013 15.9 0.0 5.3 4 1 0 5 5 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|383319585|ref|YP_005380426.1| - 0.00011 22.6 9.7 1.1 10.1 0.1 6.7 6 1 0 6 6 5 1 Tetratricopeptide repeat SNAP PF14938.6 gi|383319585|ref|YP_005380426.1| - 0.00047 19.7 5.0 0.0023 17.4 2.1 2.1 1 1 1 2 2 2 1 Soluble NSF attachment protein, SNAP TPR_14 PF13428.6 gi|383319585|ref|YP_005380426.1| - 0.00057 20.5 15.2 2 9.5 0.0 7.0 5 2 3 8 8 7 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|383319585|ref|YP_005380426.1| - 0.00095 18.8 2.5 8.8 6.1 0.2 5.5 5 1 1 6 6 6 1 TPR repeat TPR_21 PF09976.9 gi|383319585|ref|YP_005380426.1| - 0.0015 18.3 1.3 0.15 11.7 0.1 2.3 1 1 1 2 2 2 1 Tetratricopeptide repeat-like domain RPN7 PF10602.9 gi|383319585|ref|YP_005380426.1| - 0.0061 16.3 6.0 0.17 11.6 0.5 2.3 1 1 1 2 2 2 2 26S proteasome subunit RPN7 TPR_9 PF13371.6 gi|383319585|ref|YP_005380426.1| - 0.061 13.5 2.9 11 6.3 0.0 4.4 4 1 1 5 5 4 0 Tetratricopeptide repeat MIT PF04212.18 gi|383319585|ref|YP_005380426.1| - 0.063 13.4 0.7 20 5.4 0.1 3.1 1 1 1 2 2 2 0 MIT (microtubule interacting and transport) domain TPR_4 PF07721.14 gi|383319585|ref|YP_005380426.1| - 0.33 11.7 3.7 39 5.3 0.0 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|383319585|ref|YP_005380426.1| - 0.5 10.9 5.2 19 5.9 0.0 4.8 4 0 0 4 4 4 0 Tetratricopeptide repeat Rnk_N PF14760.6 gi|383319585|ref|YP_005380426.1| - 2.8 8.5 5.0 1.1 9.9 0.5 2.7 2 0 0 2 2 2 0 Rnk N-terminus Rsm22 PF09243.10 gi|383319586|ref|YP_005380427.1| - 2.9e-06 26.7 0.0 4.4e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_23 PF13489.6 gi|383319586|ref|YP_005380427.1| - 0.00014 21.7 0.0 0.00024 21.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383319586|ref|YP_005380427.1| - 0.00021 21.1 0.0 0.7 9.7 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383319586|ref|YP_005380427.1| - 0.011 16.4 0.0 0.037 14.7 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain CheR PF01739.18 gi|383319586|ref|YP_005380427.1| - 0.018 14.6 0.2 0.085 12.3 0.0 2.0 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_11 PF08241.12 gi|383319586|ref|YP_005380427.1| - 0.018 15.7 0.0 0.062 14.0 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain DnaJ_C PF01556.18 gi|383319587|ref|YP_005380428.1| - 8.7e-42 142.7 0.0 1.2e-41 142.3 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|383319587|ref|YP_005380428.1| - 7.1e-29 99.7 2.4 7.1e-29 99.7 2.4 1.9 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|383319587|ref|YP_005380428.1| - 8.3e-14 51.7 17.5 1.5e-13 50.9 17.5 1.4 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|383319587|ref|YP_005380428.1| - 0.012 15.6 14.2 0.31 11.0 2.4 2.5 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Cytochrome_C7 PF14522.6 gi|383319587|ref|YP_005380428.1| - 0.027 14.5 8.2 0.12 12.4 8.1 2.0 1 1 0 1 1 1 0 Cytochrome c7 and related cytochrome c Cytochrom_CIII PF02085.16 gi|383319587|ref|YP_005380428.1| - 0.032 14.6 1.9 0.08 13.3 1.9 1.7 1 0 0 1 1 1 0 Class III cytochrome C family Cytochrom_c3_2 PF14537.6 gi|383319587|ref|YP_005380428.1| - 0.27 11.7 5.1 0.94 10.0 5.1 1.9 1 1 0 1 1 1 0 Cytochrome c3 TackOD1 PF18551.1 gi|383319587|ref|YP_005380428.1| - 1 9.0 6.3 2.8 7.6 0.9 2.2 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 DZR PF12773.7 gi|383319587|ref|YP_005380428.1| - 7.4 6.7 10.4 17 5.5 2.7 2.1 1 1 1 2 2 2 0 Double zinc ribbon HSP70 PF00012.20 gi|383319588|ref|YP_005380429.1| - 3.7e-241 801.5 13.4 1.4e-215 717.1 10.1 2.1 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.13 gi|383319588|ref|YP_005380429.1| - 2.7e-21 75.8 4.6 6.8e-21 74.4 4.6 1.7 1 0 0 1 1 1 1 MreB/Mbl protein StbA PF06406.11 gi|383319588|ref|YP_005380429.1| - 3.6e-06 26.4 1.3 0.0051 16.1 0.1 2.8 2 1 1 3 3 3 2 StbA protein FAD_binding_2 PF00890.24 gi|383319588|ref|YP_005380429.1| - 0.036 13.2 0.8 0.11 11.6 0.0 2.0 2 0 0 2 2 2 0 FAD binding domain FtsA PF14450.6 gi|383319588|ref|YP_005380429.1| - 0.048 14.1 11.4 0.44 11.0 0.0 4.0 3 3 0 3 3 3 0 Cell division protein FtsA FGGY_C PF02782.16 gi|383319588|ref|YP_005380429.1| - 0.055 13.2 1.1 0.11 12.2 0.0 2.0 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain GrpE PF01025.19 gi|383319589|ref|YP_005380430.1| - 3e-47 160.4 5.8 3.6e-47 160.1 5.8 1.0 1 0 0 1 1 1 1 GrpE Radial_spoke_3 PF06098.11 gi|383319589|ref|YP_005380430.1| - 0.017 14.4 2.8 0.024 13.9 2.8 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 Guanylate_cyc PF00211.20 gi|383319589|ref|YP_005380430.1| - 0.12 12.0 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Adenylate and Guanylate cyclase catalytic domain DUF1451 PF07295.11 gi|383319589|ref|YP_005380430.1| - 0.5 10.4 3.3 0.48 10.5 1.9 1.6 1 1 0 1 1 1 0 Zinc-ribbon containing domain Response_reg PF00072.24 gi|383319590|ref|YP_005380431.1| - 3e-18 66.0 0.0 3.6e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DUF3908 PF13048.6 gi|383319590|ref|YP_005380431.1| - 0.12 12.6 0.1 0.21 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3908) CBS PF00571.28 gi|383319593|ref|YP_005380434.1| - 4.4e-24 84.7 5.3 3.3e-13 49.9 2.0 2.1 2 0 0 2 2 2 2 CBS domain PTA_PTB PF01515.19 gi|383319593|ref|YP_005380434.1| - 0.042 13.2 0.8 0.042 13.2 0.8 1.4 1 1 0 1 1 1 0 Phosphate acetyl/butaryl transferase Radical_SAM PF04055.21 gi|383319594|ref|YP_005380435.1| - 2e-15 57.5 8.8 6.3e-14 52.7 5.7 3.3 2 2 0 2 2 2 1 Radical SAM superfamily tRNA-synt_2d PF01409.20 gi|383319595|ref|YP_005380436.1| - 2.2e-54 184.5 0.0 8.4e-49 166.3 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|383319595|ref|YP_005380436.1| - 2.4e-13 49.9 0.6 4.7e-13 49.0 0.6 1.5 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|383319595|ref|YP_005380436.1| - 8.6e-09 35.1 0.0 1.1e-06 28.2 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain DUF1722 PF08349.11 gi|383319595|ref|YP_005380436.1| - 0.099 12.9 0.0 0.32 11.3 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1722) HTH_Crp_2 PF13545.6 gi|383319595|ref|YP_005380436.1| - 0.17 11.9 0.0 0.38 10.8 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Endonuclease_5 PF04493.14 gi|383319596|ref|YP_005380437.1| - 1.5e-54 184.7 0.0 1.9e-54 184.3 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|383319596|ref|YP_005380437.1| - 0.0011 18.4 0.0 0.0017 17.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF99 UvrC_HhH_N PF08459.11 gi|383319596|ref|YP_005380437.1| - 0.044 13.7 0.0 0.1 12.5 0.0 1.6 1 1 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal TPR_1 PF00515.28 gi|383319597|ref|YP_005380438.1| - 4.9e-51 168.6 9.5 2.9e-09 36.3 0.0 7.0 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|383319597|ref|YP_005380438.1| - 4.8e-47 154.3 5.7 2.4e-07 30.4 0.0 7.0 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|383319597|ref|YP_005380438.1| - 3.3e-34 114.2 7.6 8.1e-05 22.5 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|383319597|ref|YP_005380438.1| - 3.8e-34 116.1 5.1 2e-06 27.4 0.1 6.3 3 2 3 6 6 6 6 TPR repeat TPR_17 PF13431.6 gi|383319597|ref|YP_005380438.1| - 1.4e-30 103.5 6.0 4.9e-05 23.4 0.0 6.4 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|383319597|ref|YP_005380438.1| - 1.7e-30 105.4 0.7 9.4e-10 39.0 1.3 4.9 3 1 2 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|383319597|ref|YP_005380438.1| - 3.4e-27 94.5 8.0 8.6e-07 29.2 0.1 5.8 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|383319597|ref|YP_005380438.1| - 4.9e-25 86.1 7.5 6.5e-05 23.4 0.1 6.9 1 1 6 7 7 7 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|383319597|ref|YP_005380438.1| - 3.8e-23 81.4 0.9 6.8e-09 35.7 0.4 4.3 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383319597|ref|YP_005380438.1| - 5.2e-23 79.3 4.0 0.017 15.1 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|383319597|ref|YP_005380438.1| - 2e-21 76.3 0.3 2.5e-05 24.7 0.0 3.7 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|383319597|ref|YP_005380438.1| - 1.5e-17 62.9 12.3 0.001 18.9 0.3 7.1 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|383319597|ref|YP_005380438.1| - 2.7e-15 55.9 2.1 0.17 12.6 0.0 6.6 7 0 0 7 7 7 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|383319597|ref|YP_005380438.1| - 1.7e-14 53.8 3.9 7.2e-08 32.5 0.5 3.9 1 1 3 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|383319597|ref|YP_005380438.1| - 9.7e-13 47.9 0.0 0.0035 16.3 0.1 3.3 2 2 1 3 3 3 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|383319597|ref|YP_005380438.1| - 8.6e-12 44.9 2.9 0.48 10.5 0.1 6.2 5 1 1 6 6 6 2 Fis1 C-terminal tetratricopeptide repeat Coatomer_E PF04733.14 gi|383319597|ref|YP_005380438.1| - 4.6e-10 39.4 2.1 0.00039 19.9 0.1 3.5 2 1 2 4 4 4 2 Coatomer epsilon subunit SRP_TPR_like PF17004.5 gi|383319597|ref|YP_005380438.1| - 3.4e-07 30.3 0.0 0.0027 17.7 0.0 2.7 1 1 1 2 2 2 2 Putative TPR-like repeat HTH_Bact PF18768.1 gi|383319597|ref|YP_005380438.1| - 4.8e-06 26.1 1.1 0.00048 19.7 0.0 3.7 4 0 0 4 4 4 1 Helix-turn-helix bacterial domain DUF3856 PF12968.7 gi|383319597|ref|YP_005380438.1| - 7e-06 26.2 2.9 0.94 9.5 0.0 4.7 1 1 3 4 4 4 2 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|383319597|ref|YP_005380438.1| - 1.6e-05 25.4 3.4 1.7 9.1 0.0 4.2 2 2 2 4 4 4 1 Bacterial transcriptional activator domain MIT PF04212.18 gi|383319597|ref|YP_005380438.1| - 2.1e-05 24.5 3.9 2.6 8.2 0.3 5.8 6 1 0 6 6 6 1 MIT (microtubule interacting and transport) domain TPR_15 PF13429.6 gi|383319597|ref|YP_005380438.1| - 3.7e-05 23.1 0.6 0.19 10.9 0.0 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat DUF4919 PF16266.5 gi|383319597|ref|YP_005380438.1| - 0.00028 20.9 0.0 0.0071 16.3 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4919) DUF5113 PF17140.4 gi|383319597|ref|YP_005380438.1| - 0.00035 20.4 4.2 0.2 11.5 0.0 4.8 4 1 2 6 6 6 1 Domain of unknown function (DUF5113) TOM20_plant PF06552.12 gi|383319597|ref|YP_005380438.1| - 0.00056 19.7 0.5 0.4 10.4 0.0 3.9 1 1 3 4 4 4 1 Plant specific mitochondrial import receptor subunit TOM20 PPR PF01535.20 gi|383319597|ref|YP_005380438.1| - 0.0022 18.1 5.2 6.3 7.3 0.0 5.9 6 0 0 6 6 6 0 PPR repeat DUF627 PF04781.12 gi|383319597|ref|YP_005380438.1| - 0.005 16.8 0.1 3 7.9 0.0 4.0 1 1 1 2 2 2 1 Protein of unknown function (DUF627) RPN7 PF10602.9 gi|383319597|ref|YP_005380438.1| - 0.0071 16.1 4.5 4.1 7.1 0.1 4.7 3 2 3 6 6 6 1 26S proteasome subunit RPN7 DUF4192 PF13830.6 gi|383319597|ref|YP_005380438.1| - 0.02 15.0 0.3 0.059 13.4 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4192) TPR_20 PF14561.6 gi|383319597|ref|YP_005380438.1| - 0.022 15.1 0.2 28 5.1 0.3 3.3 2 1 2 4 4 4 0 Tetratricopeptide repeat Glyco_hydro_115 PF15979.5 gi|383319597|ref|YP_005380438.1| - 0.046 13.2 0.1 0.94 8.9 0.0 2.3 2 1 1 3 3 3 0 Glycosyl hydrolase family 115 Alkyl_sulf_dimr PF14863.6 gi|383319597|ref|YP_005380438.1| - 0.079 13.4 0.0 6.4 7.2 0.1 2.7 2 1 1 3 3 3 0 Alkyl sulfatase dimerisation ChAPs PF09295.10 gi|383319597|ref|YP_005380438.1| - 0.089 11.8 0.0 3.9 6.4 0.0 2.5 2 1 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) NatB_MDM20 PF09797.9 gi|383319597|ref|YP_005380438.1| - 0.14 11.0 0.1 6.6 5.6 0.0 2.8 2 1 2 4 4 4 0 N-acetyltransferase B complex (NatB) non catalytic subunit PPTA PF01239.22 gi|383319597|ref|YP_005380438.1| - 0.15 11.9 0.6 2.9 7.7 0.0 2.9 3 0 0 3 3 2 0 Protein prenyltransferase alpha subunit repeat CoiA PF06054.11 gi|383319598|ref|YP_005380439.1| - 3.5e-08 33.0 3.8 1.5e-07 30.9 3.7 1.7 1 1 0 1 1 1 1 Competence protein CoiA-like family AMP-binding_C_2 PF14535.6 gi|383319599|ref|YP_005380440.1| - 5.8e-30 103.5 0.3 1.3e-29 102.3 0.3 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|383319599|ref|YP_005380440.1| - 1.3e-15 57.0 0.6 2e-14 53.0 0.6 2.0 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|383319599|ref|YP_005380440.1| - 0.0067 15.3 0.4 0.12 11.2 0.0 2.4 3 0 0 3 3 3 1 GH3 auxin-responsive promoter HTH_37 PF13744.6 gi|383319599|ref|YP_005380440.1| - 0.079 12.9 0.0 0.21 11.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain AMP-binding_C_2 PF14535.6 gi|383319600|ref|YP_005380441.1| - 3.7e-33 113.7 0.6 1.5e-32 111.7 0.3 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|383319600|ref|YP_005380441.1| - 1.8e-15 56.5 0.1 6e-15 54.8 0.0 1.7 2 0 0 2 2 2 1 AMP-binding enzyme LuxE PF04443.12 gi|383319600|ref|YP_005380441.1| - 0.00021 20.4 0.0 0.034 13.2 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.13 gi|383319600|ref|YP_005380441.1| - 0.0022 17.0 0.0 0.9 8.3 0.0 2.2 2 0 0 2 2 2 2 GH3 auxin-responsive promoter ACT PF01842.25 gi|383319601|ref|YP_005380442.1| - 4.4e-19 67.9 0.1 3e-08 33.3 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|383319601|ref|YP_005380442.1| - 1.7e-08 34.9 0.4 0.001 19.6 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|383319601|ref|YP_005380442.1| - 1.4e-05 24.7 0.1 0.021 14.6 0.0 2.6 2 1 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|383319601|ref|YP_005380442.1| - 0.00074 19.5 0.0 0.27 11.2 0.0 2.8 2 1 1 3 3 3 1 ACT domain Glyoxalase PF00903.25 gi|383319601|ref|YP_005380442.1| - 0.039 14.2 0.0 1.2 9.3 0.0 2.2 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|383319601|ref|YP_005380442.1| - 0.079 13.2 0.0 4.4 7.6 0.0 2.3 2 0 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PK_C PF02887.16 gi|383319602|ref|YP_005380443.1| - 4.6e-09 36.5 0.0 6.4e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Peripla_BP_1 PF00532.21 gi|383319602|ref|YP_005380443.1| - 0.03 13.8 0.0 0.039 13.4 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Glycos_transf_1 PF00534.20 gi|383319602|ref|YP_005380443.1| - 0.1 12.1 0.0 0.24 10.9 0.0 1.6 1 1 1 2 2 2 0 Glycosyl transferases group 1 zinc_ribbon_6 PF14599.6 gi|383319603|ref|YP_005380444.1| - 0.013 15.5 4.0 1.2 9.3 5.4 2.0 1 1 1 2 2 2 0 Zinc-ribbon eIF-1a PF01176.19 gi|383319604|ref|YP_005380445.1| - 1e-23 82.9 0.4 1.7e-23 82.2 0.4 1.4 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 gi|383319604|ref|YP_005380445.1| - 0.0085 15.8 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 RsgA N-terminal domain N6_N4_Mtase PF01555.18 gi|383319606|ref|YP_005380447.1| - 3.7e-47 161.0 0.0 5.6e-47 160.4 0.0 1.3 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|383319606|ref|YP_005380447.1| - 0.002 17.8 0.0 0.22 11.2 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|383319606|ref|YP_005380447.1| - 0.0068 17.1 0.0 0.54 11.0 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383319606|ref|YP_005380447.1| - 0.012 16.3 0.0 1.3 9.7 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain MethyltransfD12 PF02086.15 gi|383319606|ref|YP_005380447.1| - 0.089 12.5 0.1 0.69 9.5 0.0 2.0 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_31 PF13847.6 gi|383319606|ref|YP_005380447.1| - 0.11 12.3 0.0 4.4 7.1 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain HlyIII PF03006.20 gi|383319607|ref|YP_005380448.1| - 0.49 10.1 13.1 0.23 11.1 8.7 1.9 2 0 0 2 2 2 0 Haemolysin-III related DUF4131 PF13567.6 gi|383319607|ref|YP_005380448.1| - 3.8 7.1 8.0 2.3 7.9 1.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Lant_dehydr_C PF14028.6 gi|383319608|ref|YP_005380449.1| - 0.012 15.2 1.0 0.013 15.0 1.0 1.1 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term Imm5 PF14423.6 gi|383319608|ref|YP_005380449.1| - 0.11 12.8 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Immunity protein Imm5 DUF3054 PF11255.8 gi|383319609|ref|YP_005380450.1| - 0.0042 17.6 16.8 0.017 15.6 2.8 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF3054) DUF2070 PF09843.9 gi|383319609|ref|YP_005380450.1| - 1.5 7.0 19.7 1.8 6.7 19.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) HTH_34 PF13601.6 gi|383319610|ref|YP_005380451.1| - 1.3e-19 70.1 0.2 1.6e-19 69.8 0.2 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|383319610|ref|YP_005380451.1| - 6.3e-07 29.2 1.5 1.3e-05 25.0 0.0 3.2 3 1 1 4 4 4 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|383319610|ref|YP_005380451.1| - 6.8e-07 29.3 0.0 1.5e-06 28.2 0.0 1.5 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|383319610|ref|YP_005380451.1| - 0.0018 17.8 0.1 0.0038 16.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HxlR PF01638.17 gi|383319610|ref|YP_005380451.1| - 0.0019 18.0 0.3 0.0024 17.7 0.3 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix B-block_TFIIIC PF04182.12 gi|383319610|ref|YP_005380451.1| - 0.0026 17.9 0.0 0.0037 17.4 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.22 gi|383319610|ref|YP_005380451.1| - 0.008 16.1 0.0 0.018 14.9 0.0 1.6 2 0 0 2 2 2 1 MarR family PadR PF03551.14 gi|383319610|ref|YP_005380451.1| - 0.0086 16.0 0.1 0.014 15.4 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Cas_Cas4 PF01930.17 gi|383319611|ref|YP_005380452.1| - 3.7e-26 92.2 4.3 9e-26 90.9 4.3 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|383319611|ref|YP_005380452.1| - 2.5e-10 40.7 0.3 5.9e-09 36.2 0.1 2.0 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily DUF2800 PF10926.8 gi|383319611|ref|YP_005380452.1| - 0.00052 19.4 0.3 0.00067 19.0 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) Csa1 PF06023.12 gi|383319611|ref|YP_005380452.1| - 0.0015 17.9 1.4 0.013 14.9 0.1 2.1 1 1 1 2 2 2 1 CRISPR-associated exonuclease Csa1 AAA_assoc_C PF09821.9 gi|383319611|ref|YP_005380452.1| - 0.085 13.4 0.1 0.51 10.9 0.1 2.1 2 0 0 2 2 2 0 C-terminal AAA-associated domain FliMN_C PF01052.20 gi|383319611|ref|YP_005380452.1| - 0.095 12.7 0.1 0.36 10.9 0.0 1.9 2 0 0 2 2 2 0 Type III flagellar switch regulator (C-ring) FliN C-term Exo5 PF09810.9 gi|383319611|ref|YP_005380452.1| - 0.69 9.3 0.0 0.69 9.3 0.0 2.6 1 1 2 3 3 3 0 Exonuclease V - a 5' deoxyribonuclease Cas_Cas1 PF01867.16 gi|383319612|ref|YP_005380453.1| - 1.7e-80 270.2 0.0 2.1e-80 269.9 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Cas_GSU0054 PF09609.10 gi|383319612|ref|YP_005380453.1| - 0.029 13.1 0.0 0.05 12.3 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein, GSU0054 family (Cas_GSU0054) Csa1 PF06023.12 gi|383319613|ref|YP_005380454.1| - 3.1e-77 259.8 0.1 3.4e-77 259.7 0.1 1.0 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 CRISPR_Cas2 PF09827.9 gi|383319614|ref|YP_005380455.1| - 5.4e-21 74.6 0.1 6.3e-21 74.3 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 HTH_5 PF01022.20 gi|383319615|ref|YP_005380456.1| - 2.4e-08 33.7 0.1 4.7e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Cas_APE2256 PF09651.10 gi|383319615|ref|YP_005380456.1| - 2e-06 27.7 0.0 3.1e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) HTH_IclR PF09339.10 gi|383319615|ref|YP_005380456.1| - 2.6e-05 23.9 0.0 4.1e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF1887 PF09002.11 gi|383319615|ref|YP_005380456.1| - 3.9e-05 22.5 0.0 4.9e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) TrmB PF01978.19 gi|383319615|ref|YP_005380456.1| - 6.9e-05 22.6 0.0 0.00017 21.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|383319615|ref|YP_005380456.1| - 7.3e-05 22.2 0.1 0.00011 21.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|383319615|ref|YP_005380456.1| - 0.00024 21.0 0.0 0.00051 19.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|383319615|ref|YP_005380456.1| - 0.00044 20.1 0.0 0.0008 19.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|383319615|ref|YP_005380456.1| - 0.0011 18.9 0.0 0.0019 18.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Cas_NE0113 PF09623.10 gi|383319615|ref|YP_005380456.1| - 0.012 15.4 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein NE0113 (Cas_NE0113) HTH_7 PF02796.15 gi|383319615|ref|YP_005380456.1| - 0.035 14.2 0.2 0.34 11.0 0.0 2.5 3 0 0 3 3 2 0 Helix-turn-helix domain of resolvase Rrf2 PF02082.20 gi|383319615|ref|YP_005380456.1| - 0.054 13.9 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_36 PF13730.6 gi|383319615|ref|YP_005380456.1| - 0.056 13.4 0.1 0.1 12.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|383319615|ref|YP_005380456.1| - 0.057 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_28 PF13518.6 gi|383319615|ref|YP_005380456.1| - 0.079 13.1 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|383319615|ref|YP_005380456.1| - 0.11 12.8 1.2 0.39 11.0 0.1 2.1 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain TetR_N PF00440.23 gi|383319615|ref|YP_005380456.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_34 PF13601.6 gi|383319615|ref|YP_005380456.1| - 0.14 12.4 0.0 0.36 11.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|383319615|ref|YP_005380456.1| - 0.15 11.5 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.6 gi|383319615|ref|YP_005380456.1| - 0.16 12.0 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix Glucosamine_iso PF01182.20 gi|383319615|ref|YP_005380456.1| - 0.17 11.8 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NTP_transf_2 PF01909.23 gi|383319616|ref|YP_005380457.1| - 1e-08 35.4 0.3 1.3e-08 35.0 0.3 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|383319616|ref|YP_005380457.1| - 1.1e-08 35.0 0.5 2.2e-08 34.1 0.5 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase SpoVG PF04026.12 gi|383319616|ref|YP_005380457.1| - 0.071 13.3 0.0 0.084 13.1 0.0 1.2 1 0 0 1 1 1 0 SpoVG MdcG PF10620.9 gi|383319616|ref|YP_005380457.1| - 0.25 11.1 0.0 0.33 10.7 0.0 1.3 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG TPR_11 PF13414.6 gi|383319617|ref|YP_005380458.1| - 7.3e-23 80.0 5.3 1.4e-07 31.1 0.0 5.2 1 1 4 5 5 5 5 TPR repeat TPR_14 PF13428.6 gi|383319617|ref|YP_005380458.1| - 2.7e-18 65.1 3.3 0.0011 19.6 0.1 5.1 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|383319617|ref|YP_005380458.1| - 2.1e-17 61.8 5.4 0.005 17.0 0.1 5.7 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|383319617|ref|YP_005380458.1| - 3.8e-17 62.5 8.0 2.7e-06 27.8 0.1 4.2 3 2 1 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|383319617|ref|YP_005380458.1| - 4e-17 60.9 5.9 0.0035 17.3 0.0 5.8 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|383319617|ref|YP_005380458.1| - 3.5e-16 59.6 0.6 1.2e-06 29.0 0.0 4.1 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|383319617|ref|YP_005380458.1| - 1.8e-15 56.1 0.1 0.00068 19.8 0.0 4.7 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_20 PF14561.6 gi|383319617|ref|YP_005380458.1| - 4.4e-12 46.2 0.0 0.022 15.1 0.0 4.2 1 1 2 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|383319617|ref|YP_005380458.1| - 9.1e-12 44.3 5.8 0.0013 18.4 0.1 5.3 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|383319617|ref|YP_005380458.1| - 3e-09 37.0 6.9 0.005 17.1 0.4 4.3 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|383319617|ref|YP_005380458.1| - 1.3e-07 31.8 1.9 0.42 11.3 0.0 4.6 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383319617|ref|YP_005380458.1| - 1.4e-05 24.8 4.4 1 9.5 0.1 4.8 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|383319617|ref|YP_005380458.1| - 3e-05 23.4 0.2 4.6e-05 22.8 0.2 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|383319617|ref|YP_005380458.1| - 0.00033 20.8 0.2 0.0072 16.5 0.0 2.8 2 1 2 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|383319617|ref|YP_005380458.1| - 0.0014 17.6 0.3 0.0049 15.9 0.0 1.8 1 1 0 2 2 2 1 NMDA receptor-regulated protein 1 TPR_9 PF13371.6 gi|383319617|ref|YP_005380458.1| - 0.0034 17.5 3.0 1.3 9.2 0.2 3.2 1 1 2 3 3 3 2 Tetratricopeptide repeat BTAD PF03704.17 gi|383319617|ref|YP_005380458.1| - 0.0034 17.8 4.9 0.033 14.6 0.2 3.0 1 1 3 4 4 4 1 Bacterial transcriptional activator domain TPR_10 PF13374.6 gi|383319617|ref|YP_005380458.1| - 0.013 15.3 11.6 8.4 6.4 0.1 4.9 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|383319617|ref|YP_005380458.1| - 0.022 14.5 0.2 0.1 12.3 0.1 2.0 1 1 1 2 2 2 0 Tetratricopeptide repeat-like domain ANAPC5 PF12862.7 gi|383319617|ref|YP_005380458.1| - 0.046 13.8 0.1 27 4.9 0.0 3.3 3 1 1 4 4 4 0 Anaphase-promoting complex subunit 5 HTH_38 PF13936.6 gi|383319619|ref|YP_005380460.1| - 0.00017 21.3 0.1 0.00058 19.6 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.13 gi|383319619|ref|YP_005380460.1| - 0.033 13.9 0.3 0.033 13.9 0.3 1.8 2 0 0 2 2 2 0 InsA N-terminal domain zinc_ribbon_9 PF14369.6 gi|383319619|ref|YP_005380460.1| - 0.056 13.7 0.2 0.36 11.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon Cas_CXXC_CXXC PF09706.10 gi|383319620|ref|YP_005380461.1| - 0.068 13.4 0.2 0.2 11.9 0.2 1.8 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_CXXC_CXXC) RAMPs PF03787.15 gi|383319621|ref|YP_005380462.1| - 0.05 13.6 0.0 0.085 12.9 0.0 1.4 1 0 0 1 1 1 0 RAMP superfamily DUF3922 PF13059.6 gi|383319621|ref|YP_005380462.1| - 0.16 12.4 0.0 0.28 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3992) N6_N4_Mtase PF01555.18 gi|383319623|ref|YP_005380464.1| - 0.07 12.8 2.2 0.13 11.9 2.2 1.8 1 1 0 1 1 1 0 DNA methylase DEAD PF00270.29 gi|383319624|ref|YP_005380465.1| - 1.9e-14 53.9 1.8 1.3e-07 31.6 0.1 3.3 2 1 0 3 3 3 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|383319624|ref|YP_005380465.1| - 1.1e-09 38.7 0.4 1.1e-09 38.7 0.4 3.1 4 1 0 4 4 4 1 Helicase conserved C-terminal domain AFG1_ATPase PF03969.16 gi|383319624|ref|YP_005380465.1| - 0.002 17.1 0.0 0.0033 16.4 0.0 1.3 1 0 0 1 1 1 1 AFG1-like ATPase CRISPR_Cas6 PF10040.9 gi|383319625|ref|YP_005380466.1| - 1.8e-06 28.5 0.0 3.8e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 FrhB_FdhB_C PF04432.13 gi|383319626|ref|YP_005380467.1| - 2.1e-31 108.8 0.0 3.3e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|383319626|ref|YP_005380467.1| - 6.2e-14 51.9 0.0 1.1e-13 51.1 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.6 gi|383319626|ref|YP_005380467.1| - 2.6e-07 30.6 11.2 2.6e-07 30.6 11.2 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383319626|ref|YP_005380467.1| - 1.2e-06 28.5 11.7 1.3e-06 28.5 10.1 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383319626|ref|YP_005380467.1| - 1.2e-06 28.3 17.6 2.1e-05 24.4 1.4 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|383319626|ref|YP_005380467.1| - 8.1e-06 26.2 3.1 0.023 15.1 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|383319626|ref|YP_005380467.1| - 1.5e-05 24.6 14.9 0.0016 18.2 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|383319626|ref|YP_005380467.1| - 1.8e-05 24.5 13.3 0.0063 16.5 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|383319626|ref|YP_005380467.1| - 3e-05 24.9 9.2 0.025 15.5 0.9 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|383319626|ref|YP_005380467.1| - 4.9e-05 23.8 11.7 0.00074 20.1 12.8 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|383319626|ref|YP_005380467.1| - 0.00036 20.7 2.3 0.00077 19.6 2.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383319626|ref|YP_005380467.1| - 0.0037 17.8 11.8 0.52 10.9 2.5 2.6 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383319626|ref|YP_005380467.1| - 0.0052 17.2 15.5 0.041 14.4 0.5 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383319626|ref|YP_005380467.1| - 0.015 15.4 1.9 0.015 15.4 1.9 2.6 2 1 0 3 3 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|383319626|ref|YP_005380467.1| - 0.22 12.4 5.3 2.2 9.2 0.5 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain NiFe_hyd_SSU_C PF14720.6 gi|383319626|ref|YP_005380467.1| - 0.31 11.4 2.8 0.62 10.5 2.8 1.4 1 0 0 1 1 1 0 NiFe/NiFeSe hydrogenase small subunit C-terminal Fer4_13 PF13370.6 gi|383319626|ref|YP_005380467.1| - 0.39 11.3 12.4 4.3 8.0 4.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DUF2070 PF09843.9 gi|383319627|ref|YP_005380468.1| - 0.12 10.6 6.9 0.21 9.9 6.6 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF373 PF04123.13 gi|383319627|ref|YP_005380468.1| - 0.69 9.3 5.9 1.8 7.9 0.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF373) DUF3180 PF11377.8 gi|383319627|ref|YP_005380468.1| - 0.9 9.7 10.6 0.19 11.9 2.3 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3180) Fe_dep_repress PF01325.19 gi|383319630|ref|YP_005380471.1| - 2.4e-06 27.6 0.1 1.6e-05 25.0 0.0 2.2 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|383319630|ref|YP_005380471.1| - 1.9e-05 24.1 0.0 5.3e-05 22.7 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|383319630|ref|YP_005380471.1| - 0.00013 21.8 0.0 0.0002 21.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|383319630|ref|YP_005380471.1| - 0.00061 19.6 0.0 0.0012 18.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family NTP_transf_2 PF01909.23 gi|383319630|ref|YP_005380471.1| - 0.0043 17.3 0.0 0.0083 16.4 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|383319630|ref|YP_005380471.1| - 0.0063 16.6 0.0 0.014 15.5 0.0 1.7 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase TrmB PF01978.19 gi|383319630|ref|YP_005380471.1| - 0.0074 16.2 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|383319630|ref|YP_005380471.1| - 0.012 15.5 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain MarR PF01047.22 gi|383319630|ref|YP_005380471.1| - 0.013 15.4 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|383319630|ref|YP_005380471.1| - 0.024 14.4 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|383319630|ref|YP_005380471.1| - 0.032 14.0 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|383319630|ref|YP_005380471.1| - 0.035 14.1 0.0 0.057 13.4 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|383319630|ref|YP_005380471.1| - 0.061 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|383319630|ref|YP_005380471.1| - 0.088 12.8 0.0 0.5 10.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family RepL PF05732.11 gi|383319630|ref|YP_005380471.1| - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Cro PF09048.10 gi|383319630|ref|YP_005380471.1| - 0.15 12.1 0.0 0.84 9.7 0.0 2.0 2 0 0 2 2 2 0 Cro ssDNA-exonuc_C PF10141.9 gi|383319630|ref|YP_005380471.1| - 0.19 11.4 0.0 0.28 10.8 0.0 1.2 1 0 0 1 1 1 0 Single-strand DNA-specific exonuclease, C terminal domain Fasciclin PF02469.22 gi|383319631|ref|YP_005380472.1| - 3.2e-06 27.4 0.0 4.1e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain Rep_fac_C PF08542.11 gi|383319632|ref|YP_005380473.1| - 1.9e-20 73.1 0.0 6.5e-20 71.3 0.0 2.0 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|383319632|ref|YP_005380473.1| - 1.3e-17 64.5 0.0 3.7e-17 63.0 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|383319632|ref|YP_005380473.1| - 1.1e-14 54.6 0.0 1.6e-08 34.5 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|383319632|ref|YP_005380473.1| - 6.9e-10 38.9 0.0 9.2e-09 35.2 0.0 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|383319632|ref|YP_005380473.1| - 1.3e-07 32.2 0.1 0.00015 22.2 0.0 2.5 2 1 1 3 3 2 2 AAA ATPase domain Mg_chelatase PF01078.21 gi|383319632|ref|YP_005380473.1| - 6.7e-06 25.6 0.0 0.0029 17.0 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_assoc_2 PF16193.5 gi|383319632|ref|YP_005380473.1| - 1.4e-05 25.4 0.0 3.4e-05 24.1 0.0 1.7 1 0 0 1 1 1 1 AAA C-terminal domain Rad17 PF03215.15 gi|383319632|ref|YP_005380473.1| - 2.2e-05 24.5 0.0 3.8e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|383319632|ref|YP_005380473.1| - 3.2e-05 24.0 0.0 6e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|383319632|ref|YP_005380473.1| - 5.1e-05 23.3 0.0 0.0023 18.0 0.0 2.2 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit AAA_3 PF07726.11 gi|383319632|ref|YP_005380473.1| - 6e-05 22.9 0.0 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|383319632|ref|YP_005380473.1| - 6.6e-05 22.3 0.0 0.0013 18.0 0.0 2.2 1 1 1 2 2 2 1 TIP49 P-loop domain Sigma54_activ_2 PF14532.6 gi|383319632|ref|YP_005380473.1| - 0.00048 20.3 0.0 0.001 19.2 0.0 1.5 1 1 0 1 1 1 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|383319632|ref|YP_005380473.1| - 0.0011 18.7 0.0 0.003 17.3 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|383319632|ref|YP_005380473.1| - 0.0018 18.8 0.0 0.011 16.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|383319632|ref|YP_005380473.1| - 0.0021 17.8 0.0 0.59 9.8 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_22 PF13401.6 gi|383319632|ref|YP_005380473.1| - 0.0022 18.3 0.1 1.6 9.0 0.0 2.5 1 1 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|383319632|ref|YP_005380473.1| - 0.0066 16.0 0.0 0.016 14.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_2 PF07724.14 gi|383319632|ref|YP_005380473.1| - 0.0082 16.3 0.0 0.026 14.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|383319632|ref|YP_005380473.1| - 0.011 15.7 0.0 0.046 13.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|383319632|ref|YP_005380473.1| - 0.027 13.9 0.1 0.68 9.4 0.0 2.5 2 1 0 3 3 3 0 PhoH-like protein RNA_helicase PF00910.22 gi|383319632|ref|YP_005380473.1| - 0.028 14.8 0.0 0.07 13.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_11 PF13086.6 gi|383319632|ref|YP_005380473.1| - 0.064 13.0 0.1 0.46 10.2 0.1 2.4 1 1 0 1 1 1 0 AAA domain Torsin PF06309.11 gi|383319632|ref|YP_005380473.1| - 0.067 13.3 0.0 0.2 11.8 0.0 1.7 1 0 0 1 1 1 0 Torsin DUF3400 PF11880.8 gi|383319632|ref|YP_005380473.1| - 0.087 12.4 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) SNF2_N PF00176.23 gi|383319632|ref|YP_005380473.1| - 0.098 11.4 0.0 0.22 10.2 0.0 1.5 2 0 0 2 2 2 0 SNF2 family N-terminal domain DNA_pol3_delta PF06144.13 gi|383319632|ref|YP_005380473.1| - 0.13 12.1 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase III, delta subunit P16-Arc PF04699.14 gi|383319632|ref|YP_005380473.1| - 0.16 12.5 0.1 0.29 11.6 0.1 1.4 1 0 0 1 1 1 0 ARP2/3 complex 16 kDa subunit (p16-Arc) DUF2240 PF09999.9 gi|383319633|ref|YP_005380474.1| - 1.3e-33 115.6 0.0 1.6e-33 115.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Antimicrobial_3 PF08025.11 gi|383319633|ref|YP_005380474.1| - 0.076 13.0 0.1 0.17 11.9 0.1 1.5 1 0 0 1 1 1 0 Spider antimicrobial peptide PS_pyruv_trans PF04230.13 gi|383319635|ref|YP_005380476.1| - 0.056 13.4 0.0 0.057 13.3 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide pyruvyl transferase Band_7 PF01145.25 gi|383319636|ref|YP_005380477.1| - 2e-31 109.4 1.6 2.7e-31 109.0 0.5 1.7 2 0 0 2 2 2 1 SPFH domain / Band 7 family NfeD PF01957.18 gi|383319637|ref|YP_005380478.1| - 7e-19 68.0 1.2 7e-19 68.0 1.2 1.7 2 1 0 2 2 2 1 NfeD-like C-terminal, partner-binding DUF308 PF03729.13 gi|383319637|ref|YP_005380478.1| - 7.9 6.9 16.7 0.22 11.9 5.7 2.3 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) DUF4212 PF13937.6 gi|383319637|ref|YP_005380478.1| - 8 6.9 7.4 13 6.2 7.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) Fmp27_WPPW PF10359.9 gi|383319638|ref|YP_005380479.1| - 0.007 15.3 0.0 0.0086 15.0 0.0 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain Cas_Cas4 PF01930.17 gi|383319639|ref|YP_005380480.1| - 3.7e-09 36.9 0.0 6.5e-07 29.6 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF83 YbjQ_1 PF01906.17 gi|383319640|ref|YP_005380481.1| - 1.3e-36 125.4 0.3 1.5e-36 125.2 0.3 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.6 gi|383319640|ref|YP_005380481.1| - 0.0046 17.3 0.2 0.01 16.1 0.2 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4156) SeleniumBinding PF11524.8 gi|383319640|ref|YP_005380481.1| - 0.14 12.6 0.0 0.22 12.0 0.0 1.3 1 0 0 1 1 1 0 Selenium binding protein GATase_5 PF13507.6 gi|383319642|ref|YP_005380483.1| - 7.6e-82 274.3 0.0 8.5e-82 274.1 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|383319642|ref|YP_005380483.1| - 0.00053 19.6 0.1 0.0021 17.7 0.1 1.9 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|383319642|ref|YP_005380483.1| - 0.0084 15.9 0.0 0.049 13.4 0.0 2.0 1 1 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|383319642|ref|YP_005380483.1| - 0.11 12.2 0.5 0.23 11.2 0.5 1.9 1 1 0 1 1 1 0 Glutamine amidotransferase class-I AIRS_C PF02769.22 gi|383319643|ref|YP_005380484.1| - 5.8e-53 179.2 0.6 8.1e-26 91.0 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|383319643|ref|YP_005380484.1| - 1.8e-20 73.2 0.1 7.3e-19 68.0 0.0 2.5 2 0 0 2 2 2 1 Formylglycinamide ribonucleotide amidotransferase linker domain AIRS PF00586.24 gi|383319643|ref|YP_005380484.1| - 2.3e-17 63.4 0.0 2e-11 44.4 0.0 2.4 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain PurS PF02700.14 gi|383319643|ref|YP_005380484.1| - 9.5e-10 38.5 0.0 0.00032 20.8 0.0 3.5 4 1 0 4 4 4 2 Phosphoribosylformylglycinamidine (FGAM) synthase Cofac_haem_bdg PF04187.13 gi|383319643|ref|YP_005380484.1| - 0.18 11.8 0.0 0.34 10.9 0.0 1.4 1 0 0 1 1 1 0 Haem-binding uptake, Tiki superfamily, ChaN ThiC_Rad_SAM PF01964.18 gi|383319644|ref|YP_005380485.1| - 3.5e-169 563.0 0.0 3.9e-169 562.9 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family DUF2115 PF09888.9 gi|383319645|ref|YP_005380486.1| - 1.9e-55 187.8 0.0 2.2e-55 187.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) Rnk_N PF14760.6 gi|383319645|ref|YP_005380486.1| - 0.051 14.1 0.1 3.8 8.1 0.0 2.2 2 0 0 2 2 2 0 Rnk N-terminus VWA_2 PF13519.6 gi|383319646|ref|YP_005380487.1| - 4e-11 43.5 0.1 1.5e-10 41.7 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|383319646|ref|YP_005380487.1| - 3.3e-10 39.7 0.0 6e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|383319646|ref|YP_005380487.1| - 1.5e-08 35.1 0.0 3.3e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|383319646|ref|YP_005380487.1| - 6.5e-06 26.2 0.0 1.2e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|383319647|ref|YP_005380488.1| - 5.5e-28 97.7 0.0 1.2e-27 96.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|383319647|ref|YP_005380488.1| - 1.7e-16 59.9 0.7 4.1e-16 58.6 0.7 1.7 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 gi|383319647|ref|YP_005380488.1| - 4.3e-05 24.0 0.0 0.00014 22.3 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|383319647|ref|YP_005380488.1| - 0.00013 21.8 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|383319647|ref|YP_005380488.1| - 0.0066 16.9 0.1 0.019 15.3 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|383319647|ref|YP_005380488.1| - 0.0073 15.7 0.0 0.1 12.0 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|383319647|ref|YP_005380488.1| - 0.0091 16.4 0.0 0.022 15.1 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_7 PF12775.7 gi|383319647|ref|YP_005380488.1| - 0.018 14.5 0.0 0.086 12.3 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|383319647|ref|YP_005380488.1| - 0.042 13.6 0.0 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|383319647|ref|YP_005380488.1| - 0.11 12.2 0.0 1.7 8.3 0.0 2.3 1 1 0 1 1 1 0 Sigma-54 interaction domain RuvB_N PF05496.12 gi|383319647|ref|YP_005380488.1| - 0.14 11.9 0.0 0.66 9.7 0.0 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain PSRP-3_Ycf65 PF04839.13 gi|383319647|ref|YP_005380488.1| - 0.15 12.3 0.1 0.38 11.0 0.1 1.6 1 0 0 1 1 1 0 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) GATase_3 PF07685.14 gi|383319648|ref|YP_005380489.1| - 3.3e-52 177.0 0.0 5e-52 176.4 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|383319648|ref|YP_005380489.1| - 8.1e-23 80.9 0.0 1.4e-22 80.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|383319648|ref|YP_005380489.1| - 9e-19 68.1 0.0 1.1e-17 64.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|383319648|ref|YP_005380489.1| - 0.00014 21.8 0.1 0.44 10.4 0.0 2.4 2 0 0 2 2 2 2 NTPase GATase PF00117.28 gi|383319648|ref|YP_005380489.1| - 0.0028 17.4 0.0 0.0066 16.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I VirC1 PF07015.11 gi|383319648|ref|YP_005380489.1| - 0.026 13.8 0.1 0.048 13.0 0.1 1.4 1 0 0 1 1 1 0 VirC1 protein DUF1611 PF07755.11 gi|383319648|ref|YP_005380489.1| - 0.11 11.8 0.1 1.5 8.0 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1611_C) P-loop domain MobB PF03205.14 gi|383319648|ref|YP_005380489.1| - 0.16 11.9 0.0 0.54 10.2 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DJ-1_PfpI PF01965.24 gi|383319648|ref|YP_005380489.1| - 0.18 11.6 0.0 0.5 10.2 0.0 1.7 1 0 0 1 1 1 0 DJ-1/PfpI family DUF4364 PF14277.6 gi|383319649|ref|YP_005380490.1| - 0.0048 16.6 0.6 0.031 14.0 0.0 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4364) RNA_pol_3_Rpc31 PF11705.8 gi|383319649|ref|YP_005380490.1| - 0.098 12.9 2.6 0.17 12.2 2.6 1.5 1 1 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 DUF4083 PF13314.6 gi|383319649|ref|YP_005380490.1| - 0.1 12.6 0.9 0.17 11.9 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) Trimer_CC PF08954.11 gi|383319649|ref|YP_005380490.1| - 0.16 11.6 1.6 0.37 10.4 0.1 2.1 2 0 0 2 2 2 0 Trimerisation motif DUF2791 PF10923.8 gi|383319650|ref|YP_005380491.1| - 8.1e-06 24.9 0.0 0.0021 17.0 0.0 2.4 2 0 0 2 2 2 2 P-loop Domain of unknown function (DUF2791) AAA PF00004.29 gi|383319650|ref|YP_005380491.1| - 0.0045 17.4 0.0 0.76 10.2 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|383319650|ref|YP_005380491.1| - 0.0077 16.7 0.0 0.021 15.3 0.0 1.7 1 0 0 1 1 1 1 ABC transporter DsrD PF08679.11 gi|383319650|ref|YP_005380491.1| - 0.018 15.3 0.2 0.24 11.7 0.1 2.8 3 0 0 3 3 3 0 Dissimilatory sulfite reductase D (DsrD) RTC4 PF14474.6 gi|383319650|ref|YP_005380491.1| - 0.046 13.9 0.1 0.17 12.1 0.0 2.0 2 0 0 2 2 2 0 RTC4-like domain PCI PF01399.27 gi|383319650|ref|YP_005380491.1| - 0.17 12.4 0.7 0.97 10.0 0.1 2.4 2 0 0 2 2 2 0 PCI domain AAA_29 PF13555.6 gi|383319650|ref|YP_005380491.1| - 0.18 11.6 0.0 0.63 9.8 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain cobW PF02492.19 gi|383319650|ref|YP_005380491.1| - 0.18 11.3 0.0 0.32 10.6 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF2551 PF10826.8 gi|383319651|ref|YP_005380492.1| - 2.5e-28 98.1 0.8 3e-28 97.9 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Peptidase_S26 PF10502.9 gi|383319651|ref|YP_005380492.1| - 0.16 11.8 0.1 0.29 10.9 0.1 1.5 1 1 0 1 1 1 0 Signal peptidase, peptidase S26 NUDIX PF00293.28 gi|383319652|ref|YP_005380493.1| - 2.5e-15 56.7 0.1 2.9e-15 56.4 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain DHDPS PF00701.22 gi|383319653|ref|YP_005380494.1| - 7.9e-61 205.3 0.0 9.3e-61 205.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AFOR_C PF01314.18 gi|383319654|ref|YP_005380495.1| - 2.7e-118 395.3 0.0 3.4e-118 395.0 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|383319654|ref|YP_005380495.1| - 2.8e-69 233.0 0.1 4.1e-69 232.4 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Glycos_transf_1 PF00534.20 gi|383319656|ref|YP_005380497.1| - 2.6e-29 101.9 0.0 4.3e-29 101.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383319656|ref|YP_005380497.1| - 5.5e-24 85.1 1.3 1e-23 84.2 1.3 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|383319656|ref|YP_005380497.1| - 4.1e-20 72.6 0.0 6.8e-20 71.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|383319656|ref|YP_005380497.1| - 1.3e-11 45.3 0.0 4.1e-11 43.6 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|383319656|ref|YP_005380497.1| - 4.7e-08 33.3 0.0 9.6e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|383319656|ref|YP_005380497.1| - 0.013 15.5 0.1 0.15 12.1 0.0 2.6 2 1 0 2 2 2 0 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|383319656|ref|YP_005380497.1| - 0.084 12.6 1.2 4.5 6.9 0.4 2.9 2 1 0 3 3 3 0 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|383319657|ref|YP_005380498.1| - 4.2e-27 94.8 0.0 6.1e-27 94.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383319657|ref|YP_005380498.1| - 2e-25 89.8 1.5 4.8e-25 88.5 1.5 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|383319657|ref|YP_005380498.1| - 5.1e-22 78.8 0.0 6.7e-21 75.1 0.0 2.3 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|383319657|ref|YP_005380498.1| - 5e-12 46.5 0.1 1.7e-11 44.8 0.1 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|383319657|ref|YP_005380498.1| - 2.1e-05 24.8 0.0 5e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|383319657|ref|YP_005380498.1| - 0.0087 15.8 0.1 0.12 12.0 0.1 2.2 1 1 0 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|383319657|ref|YP_005380498.1| - 0.032 14.3 0.0 0.095 12.7 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferase 4-like GDE_N_bis PF14742.6 gi|383319658|ref|YP_005380499.1| - 4.7e-45 153.5 0.0 8.5e-45 152.7 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.14 gi|383319658|ref|YP_005380499.1| - 1.2e-11 44.1 0.0 5.8e-11 41.9 0.0 2.1 1 1 1 2 2 2 1 Amylo-alpha-1,6-glucosidase Trehalase PF01204.18 gi|383319658|ref|YP_005380499.1| - 0.00048 19.1 0.0 0.0025 16.7 0.0 1.8 2 0 0 2 2 2 1 Trehalase Glyco_hydro_100 PF12899.7 gi|383319658|ref|YP_005380499.1| - 0.067 11.8 0.4 6 5.4 0.0 2.1 2 0 0 2 2 2 0 Alkaline and neutral invertase Glyco_hydro_63 PF03200.16 gi|383319658|ref|YP_005380499.1| - 0.07 11.9 0.3 0.14 10.8 0.1 1.5 2 0 0 2 2 2 0 Glycosyl hydrolase family 63 C-terminal domain Radical_SAM PF04055.21 gi|383319659|ref|YP_005380500.1| - 1.7e-33 116.4 0.2 6.7e-33 114.4 0.0 1.9 2 1 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|383319659|ref|YP_005380500.1| - 1.3e-17 63.9 0.2 2.1e-17 63.2 0.2 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|383319659|ref|YP_005380500.1| - 1.1e-07 32.2 0.0 5.7e-07 29.9 0.0 2.2 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|383319659|ref|YP_005380500.1| - 9.6e-05 22.5 0.0 0.00019 21.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_M50 PF02163.22 gi|383319660|ref|YP_005380501.1| - 1.3e-10 41.0 10.9 1.9e-07 30.7 0.3 2.6 1 1 1 2 2 2 2 Peptidase family M50 DUF126 PF01989.16 gi|383319661|ref|YP_005380502.1| - 7.8e-37 124.9 0.8 1.1e-36 124.4 0.8 1.2 1 0 0 1 1 1 1 Aconitase X swivel domain DUF521 PF04412.13 gi|383319662|ref|YP_005380503.1| - 5.5e-157 522.6 0.0 6.3e-157 522.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) CoA_binding_2 PF13380.6 gi|383319662|ref|YP_005380503.1| - 0.016 15.7 0.0 0.043 14.3 0.0 1.7 1 0 0 1 1 1 0 CoA binding domain ATPase PF06745.13 gi|383319663|ref|YP_005380504.1| - 1.1e-33 116.6 0.1 1.8e-33 115.8 0.1 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|383319663|ref|YP_005380504.1| - 8e-05 22.3 0.1 0.00021 21.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|383319663|ref|YP_005380504.1| - 0.00028 20.3 0.0 0.00044 19.7 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_14 PF13173.6 gi|383319663|ref|YP_005380504.1| - 0.0011 19.1 0.1 0.0024 17.9 0.0 1.7 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|383319663|ref|YP_005380504.1| - 0.002 17.9 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Rad51 PF08423.11 gi|383319663|ref|YP_005380504.1| - 0.0024 17.2 0.3 0.0039 16.5 0.3 1.3 1 0 0 1 1 1 1 Rad51 AAA_24 PF13479.6 gi|383319663|ref|YP_005380504.1| - 0.0046 16.7 0.0 0.008 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|383319663|ref|YP_005380504.1| - 0.017 14.8 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain RecA PF00154.21 gi|383319663|ref|YP_005380504.1| - 0.026 14.0 0.1 0.04 13.4 0.1 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein DUF1749 PF08538.10 gi|383319663|ref|YP_005380504.1| - 0.026 13.6 0.0 2.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1749) AAA_22 PF13401.6 gi|383319663|ref|YP_005380504.1| - 0.031 14.6 0.0 0.057 13.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|383319663|ref|YP_005380504.1| - 0.038 12.9 0.1 0.061 12.2 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MEDS PF14417.6 gi|383319663|ref|YP_005380504.1| - 0.041 13.7 0.0 0.081 12.7 0.0 1.5 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_7 PF12775.7 gi|383319663|ref|YP_005380504.1| - 0.046 13.2 0.0 0.089 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|383319663|ref|YP_005380504.1| - 0.056 13.8 0.0 0.19 12.1 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|383319663|ref|YP_005380504.1| - 0.06 13.3 0.1 0.17 11.8 0.0 1.8 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|383319663|ref|YP_005380504.1| - 0.069 12.6 0.1 0.16 11.4 0.1 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA PF00004.29 gi|383319663|ref|YP_005380504.1| - 0.074 13.5 0.2 0.19 12.2 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|383319663|ref|YP_005380504.1| - 0.11 12.8 0.0 0.25 11.7 0.0 1.6 2 0 0 2 2 1 0 AAA domain ResIII PF04851.15 gi|383319663|ref|YP_005380504.1| - 0.11 12.4 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_5 PF07728.14 gi|383319663|ref|YP_005380504.1| - 0.12 12.4 0.0 0.29 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|383319663|ref|YP_005380504.1| - 0.13 12.2 0.1 1.1 9.1 0.3 2.3 3 0 0 3 3 2 0 NACHT domain Roc PF08477.13 gi|383319663|ref|YP_005380504.1| - 0.15 12.3 0.1 0.85 9.9 0.0 2.0 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Robl_LC7 PF03259.17 gi|383319664|ref|YP_005380505.1| - 2.4e-05 24.0 0.0 4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Roadblock/LC7 domain DUF3271 PF11675.8 gi|383319664|ref|YP_005380505.1| - 0.044 13.0 0.0 0.065 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3271) DUF2785 PF10978.8 gi|383319664|ref|YP_005380505.1| - 0.047 13.5 0.0 0.083 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) Peptidase_C97 PF05903.14 gi|383319664|ref|YP_005380505.1| - 0.13 12.1 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 PPPDE putative peptidase domain SHOCT PF09851.9 gi|383319664|ref|YP_005380505.1| - 1.8 8.4 4.0 0.5 10.2 0.7 1.8 2 0 0 2 2 2 0 Short C-terminal domain Peptidase_M29 PF02073.15 gi|383319665|ref|YP_005380506.1| - 1e-10 41.0 0.1 4e-10 39.0 0.1 2.0 1 1 0 1 1 1 1 Thermophilic metalloprotease (M29) HTH_3 PF01381.22 gi|383319666|ref|YP_005380507.1| - 3.4e-10 39.8 0.0 8.5e-10 38.5 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|383319666|ref|YP_005380507.1| - 5.4e-07 29.9 0.0 1.4e-06 28.6 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|383319666|ref|YP_005380507.1| - 0.00039 20.4 0.0 0.0011 19.0 0.0 1.8 2 1 0 2 2 2 1 Helix-turn-helix domain PrpR_N PF06506.11 gi|383319666|ref|YP_005380507.1| - 0.0011 18.5 2.1 0.0023 17.5 1.0 1.8 2 0 0 2 2 2 1 Propionate catabolism activator HTH_26 PF13443.6 gi|383319666|ref|YP_005380507.1| - 0.031 14.7 0.0 0.062 13.8 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_23 PF13384.6 gi|383319666|ref|YP_005380507.1| - 0.047 13.5 0.0 0.22 11.3 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_7 PF02796.15 gi|383319666|ref|YP_005380507.1| - 0.069 13.2 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase CENP-B_N PF04218.13 gi|383319666|ref|YP_005380507.1| - 0.09 12.4 0.1 4.6 7.0 0.0 2.6 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain ArsR PF09824.9 gi|383319666|ref|YP_005380507.1| - 0.12 12.0 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 ArsR transcriptional regulator NMT1_2 PF13379.6 gi|383319667|ref|YP_005380508.1| - 9.7e-44 150.0 0.1 1.4e-43 149.5 0.1 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|383319667|ref|YP_005380508.1| - 2.9e-33 115.6 0.0 3.9e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like OpuAC PF04069.12 gi|383319667|ref|YP_005380508.1| - 1.6e-13 50.9 0.0 2.1e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Phosphonate-bd PF12974.7 gi|383319667|ref|YP_005380508.1| - 1.4e-09 37.9 0.0 2.6e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|383319667|ref|YP_005380508.1| - 7.9e-06 25.4 0.0 1.7e-05 24.4 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_3 PF16868.5 gi|383319667|ref|YP_005380508.1| - 1.1e-05 25.0 0.0 1.9e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 NMT1-like family Lipoprotein_9 PF03180.14 gi|383319667|ref|YP_005380508.1| - 3.7e-05 22.9 0.0 6.3e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 NLPA lipoprotein DUF3834 PF12916.7 gi|383319667|ref|YP_005380508.1| - 0.00014 21.2 0.0 0.0026 17.1 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF3834) TAT_signal PF10518.9 gi|383319667|ref|YP_005380508.1| - 0.004 16.9 5.0 0.0083 15.9 5.0 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence VitK2_biosynth PF02621.14 gi|383319667|ref|YP_005380508.1| - 0.018 14.5 0.0 2.4 7.6 0.1 2.1 2 0 0 2 2 2 0 Menaquinone biosynthesis TraF PF13728.6 gi|383319667|ref|YP_005380508.1| - 0.21 11.4 0.0 0.48 10.2 0.0 1.5 1 0 0 1 1 1 0 F plasmid transfer operon protein BPD_transp_1 PF00528.22 gi|383319668|ref|YP_005380509.1| - 2.9e-25 89.1 17.4 2.9e-25 89.1 17.4 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|383319669|ref|YP_005380510.1| - 2.2e-33 115.7 0.0 3.5e-33 115.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383319669|ref|YP_005380510.1| - 1.9e-07 31.2 0.0 0.0022 17.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|383319669|ref|YP_005380510.1| - 6.6e-06 26.6 0.3 6.8e-05 23.3 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|383319669|ref|YP_005380510.1| - 9.1e-06 25.3 0.0 0.097 12.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|383319669|ref|YP_005380510.1| - 1.4e-05 25.0 0.0 0.0025 17.6 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|383319669|ref|YP_005380510.1| - 2.7e-05 24.1 0.0 5.2e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|383319669|ref|YP_005380510.1| - 0.00023 21.5 0.2 0.00094 19.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|383319669|ref|YP_005380510.1| - 0.0007 20.2 0.0 0.0012 19.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|383319669|ref|YP_005380510.1| - 0.0012 18.9 0.0 0.0038 17.3 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|383319669|ref|YP_005380510.1| - 0.0012 19.2 0.1 0.0019 18.6 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|383319669|ref|YP_005380510.1| - 0.0014 18.3 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|383319669|ref|YP_005380510.1| - 0.002 18.1 0.0 0.0049 16.8 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain ATPase_2 PF01637.18 gi|383319669|ref|YP_005380510.1| - 0.0029 17.5 0.1 0.02 14.8 0.0 2.1 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|383319669|ref|YP_005380510.1| - 0.0077 16.2 0.4 0.026 14.4 0.1 2.0 2 1 0 2 2 2 1 NACHT domain NB-ARC PF00931.22 gi|383319669|ref|YP_005380510.1| - 0.0088 15.3 0.0 0.018 14.2 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain AAA_18 PF13238.6 gi|383319669|ref|YP_005380510.1| - 0.011 16.2 0.4 0.071 13.7 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|383319669|ref|YP_005380510.1| - 0.019 14.9 0.1 0.058 13.4 0.1 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|383319669|ref|YP_005380510.1| - 0.02 15.1 0.2 0.05 13.8 0.1 1.7 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|383319669|ref|YP_005380510.1| - 0.031 13.1 0.0 0.061 12.1 0.0 1.5 1 0 0 1 1 1 0 Adenovirus IVa2 protein RNA_helicase PF00910.22 gi|383319669|ref|YP_005380510.1| - 0.045 14.1 0.1 0.11 12.9 0.1 1.7 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|383319669|ref|YP_005380510.1| - 0.055 13.6 0.1 0.087 13.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|383319669|ref|YP_005380510.1| - 0.086 12.7 0.3 4 7.3 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.6 gi|383319669|ref|YP_005380510.1| - 0.095 12.7 0.0 0.28 11.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|383319669|ref|YP_005380510.1| - 0.097 12.4 0.0 0.21 11.3 0.0 1.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|383319669|ref|YP_005380510.1| - 0.11 12.2 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain MCM PF00493.23 gi|383319669|ref|YP_005380510.1| - 0.12 11.4 0.0 0.3 10.1 0.0 1.6 2 0 0 2 2 2 0 MCM P-loop domain AAA_30 PF13604.6 gi|383319669|ref|YP_005380510.1| - 0.14 11.8 0.0 0.48 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|383319669|ref|YP_005380510.1| - 0.15 11.4 0.0 0.46 9.8 0.0 1.8 2 1 1 3 3 3 0 Magnesium chelatase, subunit ChlI Acyl_transf_3 PF01757.22 gi|383319670|ref|YP_005380511.1| - 5.9e-10 38.7 40.9 7.8e-10 38.3 40.9 1.1 1 0 0 1 1 1 1 Acyltransferase family DUF3180 PF11377.8 gi|383319670|ref|YP_005380511.1| - 1.5 8.9 7.0 0.5 10.5 0.9 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3180) ATPase PF06745.13 gi|383319671|ref|YP_005380512.1| - 1.4e-58 198.0 0.2 1.7e-58 197.7 0.2 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|383319671|ref|YP_005380512.1| - 7.7e-07 28.9 0.0 3.6e-06 26.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|383319671|ref|YP_005380512.1| - 1.9e-06 27.4 0.0 1.4e-05 24.5 0.0 1.9 1 1 0 2 2 2 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|383319671|ref|YP_005380512.1| - 7.3e-06 24.9 1.7 0.0045 15.7 0.2 2.2 2 0 0 2 2 2 2 GvpD gas vesicle protein IstB_IS21 PF01695.17 gi|383319671|ref|YP_005380512.1| - 1e-05 25.3 0.0 1.6e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein RecA PF00154.21 gi|383319671|ref|YP_005380512.1| - 0.00048 19.7 0.1 0.00088 18.8 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_11 PF13086.6 gi|383319671|ref|YP_005380512.1| - 0.0011 18.8 0.0 0.0016 18.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|383319671|ref|YP_005380512.1| - 0.0051 16.1 0.0 0.007 15.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|383319671|ref|YP_005380512.1| - 0.0052 17.1 0.0 0.0097 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|383319671|ref|YP_005380512.1| - 0.0064 16.2 0.0 0.016 14.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|383319671|ref|YP_005380512.1| - 0.027 14.2 0.3 0.052 13.3 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad51 PF08423.11 gi|383319671|ref|YP_005380512.1| - 0.032 13.5 1.7 0.052 12.8 1.7 1.3 1 0 0 1 1 1 0 Rad51 NTPase_1 PF03266.15 gi|383319671|ref|YP_005380512.1| - 0.043 13.7 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 NTPase TsaE PF02367.17 gi|383319671|ref|YP_005380512.1| - 0.049 13.6 0.0 0.08 12.9 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|383319671|ref|YP_005380512.1| - 0.05 13.8 0.0 0.09 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|383319671|ref|YP_005380512.1| - 0.052 14.1 0.0 0.092 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|383319671|ref|YP_005380512.1| - 0.057 13.8 0.1 0.085 13.2 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|383319671|ref|YP_005380512.1| - 0.058 13.6 0.0 0.098 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|383319671|ref|YP_005380512.1| - 0.065 13.0 0.0 0.087 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|383319671|ref|YP_005380512.1| - 0.078 13.4 0.1 0.15 12.5 0.1 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|383319671|ref|YP_005380512.1| - 0.087 11.9 0.1 0.14 11.2 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|383319671|ref|YP_005380512.1| - 0.11 12.8 0.1 0.2 12.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|383319671|ref|YP_005380512.1| - 0.16 11.9 0.1 0.38 10.6 0.1 1.6 2 0 0 2 2 2 0 NACHT domain DPM3 PF08285.11 gi|383319672|ref|YP_005380513.1| - 0.12 12.6 1.7 0.15 12.3 1.7 1.2 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF4131 PF13567.6 gi|383319672|ref|YP_005380513.1| - 5.7 6.6 7.9 8.2 6.0 7.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2207 PF09972.9 gi|383319672|ref|YP_005380513.1| - 6.9 5.3 4.9 7.8 5.1 4.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Abhydrolase_9_N PF15420.6 gi|383319674|ref|YP_005380515.1| - 0.067 13.2 3.1 0.12 12.4 3.1 1.4 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus Neurensin PF14927.6 gi|383319674|ref|YP_005380515.1| - 0.18 11.5 0.2 0.18 11.5 0.2 2.4 3 1 0 3 3 3 0 Neurensin DUF4271 PF14093.6 gi|383319674|ref|YP_005380515.1| - 1.8 8.4 10.5 1.2 9.0 5.9 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4271) MFS_1 PF07690.16 gi|383319675|ref|YP_005380516.1| - 1.3e-20 73.7 56.3 6.3e-12 45.1 28.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|383319675|ref|YP_005380516.1| - 3.3e-09 35.8 43.6 1.1e-08 34.1 27.5 2.6 1 1 2 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|383319675|ref|YP_005380516.1| - 0.11 11.4 40.6 0.2 10.5 12.2 3.0 1 1 2 3 3 3 0 MFS_1 like family MFS_1 PF07690.16 gi|383319676|ref|YP_005380517.1| - 1.4e-26 93.3 53.0 4.3e-24 85.1 47.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|383319676|ref|YP_005380517.1| - 5e-07 28.6 38.6 6.3e-07 28.3 25.1 2.4 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.13 gi|383319676|ref|YP_005380517.1| - 0.00047 18.7 23.6 0.00047 18.7 23.6 1.6 1 1 1 2 2 2 1 Transmembrane secretion effector MFS_1 PF07690.16 gi|383319677|ref|YP_005380518.1| - 4.9e-26 91.5 47.8 1.9e-22 79.7 33.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|383319677|ref|YP_005380518.1| - 2.6e-07 29.8 11.5 0.0015 17.5 3.0 2.6 1 1 2 3 3 3 3 MFS_1 like family UNC-93 PF05978.16 gi|383319677|ref|YP_005380518.1| - 0.00014 21.6 0.2 0.00014 21.6 0.2 2.2 3 0 0 3 3 3 1 Ion channel regulatory protein UNC-93 DUF2304 PF10066.9 gi|383319677|ref|YP_005380518.1| - 4.4 7.6 6.9 24 5.2 2.5 3.3 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) TssN PF17555.2 gi|383319677|ref|YP_005380518.1| - 6.6 6.0 7.1 8.5 5.7 1.2 2.5 1 1 1 2 2 2 0 Type VI secretion system, TssN DUF1328 PF07043.13 gi|383319678|ref|YP_005380519.1| - 3e-13 49.7 15.4 4.9e-13 49.1 15.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) Holin_SPP1 PF04688.13 gi|383319678|ref|YP_005380519.1| - 0.92 9.7 4.4 1.1 9.5 4.4 1.1 1 0 0 1 1 1 0 SPP1 phage holin SecG PF03840.14 gi|383319678|ref|YP_005380519.1| - 1.8 8.7 14.1 1.2 9.3 3.4 2.1 1 1 1 2 2 2 0 Preprotein translocase SecG subunit COX2-transmemb PF09125.10 gi|383319678|ref|YP_005380519.1| - 2.9 7.7 10.9 0.28 11.0 2.1 2.2 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane ABC2_membrane_2 PF12679.7 gi|383319678|ref|YP_005380519.1| - 5.1 6.3 11.0 5.3 6.2 11.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3810 PF12725.7 gi|383319678|ref|YP_005380519.1| - 9.2 5.5 6.8 9.8 5.4 6.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Na_H_Exchanger PF00999.21 gi|383319679|ref|YP_005380520.1| - 1.9e-46 158.6 46.6 2.4e-46 158.3 46.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family LysE PF01810.18 gi|383319680|ref|YP_005380521.1| - 5.2e-27 94.6 14.0 7.9e-27 94.0 14.0 1.3 1 0 0 1 1 1 1 LysE type translocator Pribosyltran_N PF13793.6 gi|383319681|ref|YP_005380522.1| - 1.7e-27 95.6 0.0 5.5e-25 87.6 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|383319681|ref|YP_005380522.1| - 8.4e-16 57.9 0.3 1.8e-15 56.8 0.3 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|383319681|ref|YP_005380522.1| - 2.3e-08 34.3 0.4 3.8e-08 33.6 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|383319681|ref|YP_005380522.1| - 5.5e-06 26.0 0.0 1.2e-05 24.9 0.0 1.6 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|383319681|ref|YP_005380522.1| - 0.0035 16.9 0.1 0.009 15.5 0.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase P5CR_dimer PF14748.6 gi|383319681|ref|YP_005380522.1| - 0.026 14.8 0.0 0.055 13.7 0.0 1.6 1 0 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation MoaE PF02391.17 gi|383319682|ref|YP_005380523.1| - 1.4e-23 83.3 0.2 2.7e-23 82.4 0.2 1.5 1 0 0 1 1 1 1 MoaE protein MobB PF03205.14 gi|383319682|ref|YP_005380523.1| - 1.2e-19 70.5 0.3 3.3e-19 69.1 0.2 1.8 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|383319682|ref|YP_005380523.1| - 0.0023 18.5 0.0 0.021 15.3 0.0 2.1 1 1 0 2 2 2 1 AAA domain PduV-EutP PF10662.9 gi|383319682|ref|YP_005380523.1| - 0.0049 16.6 0.1 0.016 14.9 0.0 1.9 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_14 PF13173.6 gi|383319682|ref|YP_005380523.1| - 0.009 16.0 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|383319682|ref|YP_005380523.1| - 0.012 15.7 0.1 0.023 14.8 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|383319682|ref|YP_005380523.1| - 0.017 14.7 0.5 0.038 13.5 0.3 1.7 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain Roc PF08477.13 gi|383319682|ref|YP_005380523.1| - 0.036 14.3 0.1 0.1 12.8 0.0 1.8 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_16 PF13191.6 gi|383319682|ref|YP_005380523.1| - 0.041 14.3 0.9 0.31 11.4 0.8 2.4 1 1 1 2 2 2 0 AAA ATPase domain Dynamin_N PF00350.23 gi|383319682|ref|YP_005380523.1| - 0.075 13.1 0.1 0.88 9.6 0.0 2.0 2 0 0 2 2 2 0 Dynamin family Arf PF00025.21 gi|383319682|ref|YP_005380523.1| - 0.078 12.4 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 ADP-ribosylation factor family PGM_PMM_I PF02878.16 gi|383319683|ref|YP_005380524.1| - 9.5e-41 138.7 0.1 2.3e-40 137.5 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|383319683|ref|YP_005380524.1| - 7e-30 103.6 0.0 1.3e-29 102.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|383319683|ref|YP_005380524.1| - 2.2e-26 92.5 0.1 4.8e-26 91.4 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|383319683|ref|YP_005380524.1| - 1.2e-11 44.6 0.5 4.7e-11 42.7 0.1 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_29 PF03141.16 gi|383319683|ref|YP_005380524.1| - 0.033 12.8 0.1 0.096 11.2 0.0 1.7 2 0 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Asp_protease_2 PF13650.6 gi|383319683|ref|YP_005380524.1| - 0.11 13.1 0.0 0.35 11.6 0.0 1.9 1 1 1 2 2 2 0 Aspartyl protease eIF-1a PF01176.19 gi|383319684|ref|YP_005380525.1| - 1.1e-22 79.6 3.7 1.3e-22 79.4 3.2 1.3 1 1 0 1 1 1 1 Translation initiation factor 1A / IF-1 Prot_ATP_ID_OB PF16450.5 gi|383319684|ref|YP_005380525.1| - 0.13 12.2 0.5 0.2 11.7 0.5 1.2 1 0 0 1 1 1 0 Proteasomal ATPase OB C-terminal domain Myosin_N PF02736.19 gi|383319684|ref|YP_005380525.1| - 0.15 11.9 3.6 0.23 11.3 0.3 2.5 2 1 1 3 3 3 0 Myosin N-terminal SH3-like domain tRNA-synt_1b PF00579.25 gi|383319685|ref|YP_005380526.1| - 1.1e-54 185.8 0.0 1.3e-54 185.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|383319685|ref|YP_005380526.1| - 2.9e-05 23.2 0.0 0.06 12.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) SHE3 PF17078.5 gi|383319686|ref|YP_005380527.1| - 1.5e-05 24.8 3.0 1.5e-05 24.8 3.0 1.4 2 0 0 2 2 2 1 SWI5-dependent HO expression protein 3 HemX PF04375.14 gi|383319686|ref|YP_005380527.1| - 0.00014 21.3 0.0 0.00019 20.9 0.0 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase HALZ PF02183.18 gi|383319686|ref|YP_005380527.1| - 0.00027 21.1 7.9 0.014 15.6 2.1 2.3 1 1 1 2 2 2 2 Homeobox associated leucine zipper DUF3450 PF11932.8 gi|383319686|ref|YP_005380527.1| - 0.00043 19.6 0.4 0.00069 19.0 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) ZapB PF06005.12 gi|383319686|ref|YP_005380527.1| - 0.0022 18.4 3.9 0.078 13.4 0.2 1.8 1 1 1 2 2 2 2 Cell division protein ZapB BLOC1_2 PF10046.9 gi|383319686|ref|YP_005380527.1| - 0.0038 17.5 3.2 0.0092 16.3 2.0 2.1 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Wzz PF02706.15 gi|383319686|ref|YP_005380527.1| - 0.0049 17.1 6.6 0.089 13.1 6.6 2.3 1 1 0 1 1 1 1 Chain length determinant protein Sec34 PF04136.15 gi|383319686|ref|YP_005380527.1| - 0.0058 16.5 1.4 0.014 15.3 1.4 1.6 1 0 0 1 1 1 1 Sec34-like family BRE1 PF08647.11 gi|383319686|ref|YP_005380527.1| - 0.017 15.1 3.1 0.069 13.2 3.1 1.8 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase YabA PF06156.13 gi|383319686|ref|YP_005380527.1| - 0.017 15.7 0.1 0.029 15.0 0.1 1.4 1 0 0 1 1 1 0 Initiation control protein YabA ATG16 PF08614.11 gi|383319686|ref|YP_005380527.1| - 0.018 15.2 0.5 0.028 14.7 0.5 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) PI3K_P85_iSH2 PF16454.5 gi|383319686|ref|YP_005380527.1| - 0.025 14.2 4.5 1.7 8.2 4.9 2.1 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain bZIP_1 PF00170.21 gi|383319686|ref|YP_005380527.1| - 0.027 14.6 1.5 0.22 11.7 0.4 2.3 1 1 1 2 2 2 0 bZIP transcription factor UPF0242 PF06785.11 gi|383319686|ref|YP_005380527.1| - 0.031 14.4 0.0 0.046 13.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus SpoIIIAH PF12685.7 gi|383319686|ref|YP_005380527.1| - 0.057 13.3 1.0 0.073 12.9 1.0 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein TMF_TATA_bd PF12325.8 gi|383319686|ref|YP_005380527.1| - 0.073 13.3 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding FliD_N PF02465.18 gi|383319686|ref|YP_005380527.1| - 0.085 13.6 3.4 0.47 11.2 0.4 2.3 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Helicase_Sgs1 PF11408.8 gi|383319686|ref|YP_005380527.1| - 0.096 12.8 0.4 4.4 7.4 0.2 3.2 2 1 1 3 3 3 0 Sgs1 RecQ helicase SRR PF07709.11 gi|383319686|ref|YP_005380527.1| - 0.15 12.5 5.5 10 7.0 0.2 3.5 3 0 0 3 3 3 0 Seven Residue Repeat FtsL PF04999.13 gi|383319686|ref|YP_005380527.1| - 0.17 11.9 0.7 3.3 7.8 0.1 2.2 1 1 1 2 2 2 0 Cell division protein FtsL HALZ PF02183.18 gi|383319687|ref|YP_005380528.1| - 0.013 15.7 6.2 0.051 13.8 0.4 2.9 2 1 1 3 3 3 0 Homeobox associated leucine zipper Sec34 PF04136.15 gi|383319687|ref|YP_005380528.1| - 0.02 14.7 0.2 0.05 13.5 0.2 1.5 1 1 0 1 1 1 0 Sec34-like family Trp_oprn_chp PF09534.10 gi|383319687|ref|YP_005380528.1| - 0.026 14.3 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) HemX PF04375.14 gi|383319687|ref|YP_005380528.1| - 0.026 13.8 0.0 0.038 13.3 0.0 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase UPF0184 PF03670.13 gi|383319687|ref|YP_005380528.1| - 0.054 13.9 0.9 0.31 11.4 0.0 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) GDPD PF03009.17 gi|383319688|ref|YP_005380529.1| - 8.5e-31 107.6 0.0 2.7e-29 102.7 0.0 2.1 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Lyase_1 PF00206.20 gi|383319689|ref|YP_005380530.1| - 8e-57 193.0 0.3 1.4e-56 192.2 0.3 1.4 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|383319689|ref|YP_005380530.1| - 5e-24 84.6 4.4 2.2e-23 82.6 0.3 2.6 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C2 PF14698.6 gi|383319689|ref|YP_005380530.1| - 0.0012 19.6 0.8 0.012 16.3 0.0 2.6 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal ASL_C PF08328.11 gi|383319689|ref|YP_005380530.1| - 0.0056 16.8 0.9 0.013 15.5 0.1 2.1 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal FumaraseC_C PF10415.9 gi|383319689|ref|YP_005380530.1| - 0.011 16.1 0.4 0.087 13.3 0.0 2.8 3 0 0 3 3 3 0 Fumarase C C-terminus Glycos_transf_2 PF00535.26 gi|383319690|ref|YP_005380531.1| - 8.5e-16 58.2 0.0 1.2e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|383319690|ref|YP_005380531.1| - 0.0046 17.3 0.0 0.0053 17.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_21 PF13506.6 gi|383319690|ref|YP_005380531.1| - 0.032 13.7 0.0 0.048 13.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 DPPIV_N PF00930.21 gi|383319691|ref|YP_005380532.1| - 0.0042 15.9 2.3 0.17 10.6 0.2 3.1 2 1 1 3 3 3 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region DUF5074 PF16819.5 gi|383319691|ref|YP_005380532.1| - 0.011 15.8 4.9 0.25 11.4 1.1 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF5074) DUF4979 PF16351.5 gi|383319691|ref|YP_005380532.1| - 0.35 11.1 9.9 0.95 9.7 0.4 3.3 2 1 2 4 4 4 0 Domain of unknown function (DUF4979) DUF1743 PF08489.11 gi|383319692|ref|YP_005380533.1| - 8.2e-06 25.9 0.0 0.002 18.2 0.0 3.0 2 1 1 3 3 3 1 Domain of unknown function (DUF1743) TrmB PF01978.19 gi|383319692|ref|YP_005380533.1| - 0.0055 16.6 0.0 0.018 14.9 0.0 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_43 PF09904.9 gi|383319692|ref|YP_005380533.1| - 0.0088 16.0 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix MarR_2 PF12802.7 gi|383319692|ref|YP_005380533.1| - 0.011 15.6 0.0 0.037 13.9 0.0 1.9 1 0 0 1 1 1 0 MarR family HTH_26 PF13443.6 gi|383319692|ref|YP_005380533.1| - 0.039 14.4 0.0 1.5 9.3 0.0 2.7 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_23 PF13384.6 gi|383319692|ref|YP_005380533.1| - 0.048 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|383319692|ref|YP_005380533.1| - 0.055 13.5 0.1 0.18 11.8 0.1 1.9 1 0 0 1 1 1 0 Winged helix-turn helix Aminotran_5 PF00266.19 gi|383319693|ref|YP_005380534.1| - 8.4e-126 419.8 0.0 9.5e-126 419.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|383319693|ref|YP_005380534.1| - 1.8e-14 53.8 0.0 2.9e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|383319693|ref|YP_005380534.1| - 8.9e-08 31.8 0.0 1.2e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|383319693|ref|YP_005380534.1| - 1.3e-07 30.5 0.0 2.4e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|383319693|ref|YP_005380534.1| - 1.4e-07 31.1 0.0 1.1e-05 24.9 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II SepSecS PF05889.13 gi|383319693|ref|YP_005380534.1| - 4.5e-06 25.6 0.0 7e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Pyridoxal_deC PF00282.19 gi|383319693|ref|YP_005380534.1| - 0.0013 17.5 0.0 0.004 15.9 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain SHMT PF00464.19 gi|383319693|ref|YP_005380534.1| - 0.019 13.5 0.0 0.021 13.5 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase DUF4878 PF12870.7 gi|383319694|ref|YP_005380535.1| - 0.00068 19.9 0.1 0.0011 19.3 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4878) Cpn60_TCP1 PF00118.24 gi|383319695|ref|YP_005380536.1| - 1.5e-168 561.5 17.4 1.7e-168 561.3 17.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family CTP_transf_like PF01467.26 gi|383319696|ref|YP_005380537.1| - 2e-17 63.7 0.0 6.4e-17 62.1 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|383319696|ref|YP_005380537.1| - 0.13 12.1 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 FAD synthetase HIGH_NTase1 PF05636.11 gi|383319696|ref|YP_005380537.1| - 0.15 11.2 0.0 2.6 7.2 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase CDP-OH_P_transf PF01066.21 gi|383319697|ref|YP_005380538.1| - 1.4e-13 51.4 2.7 1.4e-13 51.4 2.7 2.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF2892 PF11127.8 gi|383319697|ref|YP_005380538.1| - 7.6 6.7 8.8 18 5.4 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2892) PHP PF02811.19 gi|383319698|ref|YP_005380539.1| - 4.2e-11 43.4 0.1 8e-11 42.5 0.1 1.4 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|383319698|ref|YP_005380539.1| - 0.011 15.5 0.3 0.011 15.5 0.3 1.8 2 0 0 2 2 2 0 PHP-associated RNase_P_p30 PF01876.16 gi|383319698|ref|YP_005380539.1| - 0.029 13.9 0.0 0.097 12.1 0.0 1.7 1 1 0 1 1 1 0 RNase P subunit p30 NUDIX PF00293.28 gi|383319699|ref|YP_005380540.1| - 8.5e-20 71.1 0.0 1e-19 70.8 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|383319699|ref|YP_005380540.1| - 0.0044 16.5 0.0 0.0061 16.1 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) NUDIX_4 PF14815.6 gi|383319699|ref|YP_005380540.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.3 1 1 0 1 1 1 0 NUDIX domain TFIIS_C PF01096.18 gi|383319700|ref|YP_005380541.1| - 8.3e-19 67.2 11.2 1.6e-18 66.2 5.8 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|383319700|ref|YP_005380541.1| - 5.7e-06 26.2 3.3 0.00013 21.8 0.7 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|383319700|ref|YP_005380541.1| - 5.6e-05 22.7 5.4 0.59 9.9 0.0 3.2 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|383319700|ref|YP_005380541.1| - 0.00032 20.5 7.0 1.4 8.9 0.8 3.2 3 0 0 3 3 3 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|383319700|ref|YP_005380541.1| - 0.00041 19.7 6.0 0.083 12.3 0.2 3.2 3 0 0 3 3 3 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|383319700|ref|YP_005380541.1| - 0.0025 17.9 5.5 1.6 8.9 0.1 3.2 3 0 0 3 3 3 1 Zinc ribbon domain Ribosomal_S27e PF01667.17 gi|383319700|ref|YP_005380541.1| - 0.0041 16.8 3.0 0.34 10.6 0.1 3.0 3 0 0 3 3 3 1 Ribosomal protein S27 HypA PF01155.19 gi|383319700|ref|YP_005380541.1| - 0.0052 16.8 3.3 0.082 12.9 0.2 2.3 1 1 1 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|383319700|ref|YP_005380541.1| - 0.0054 16.6 5.2 0.12 12.3 2.3 2.4 2 1 0 2 2 2 1 Putative transposase DNA-binding domain zf-ZPR1 PF03367.13 gi|383319700|ref|YP_005380541.1| - 0.0054 16.6 0.4 0.14 12.0 0.1 2.1 2 0 0 2 2 2 1 ZPR1 zinc-finger domain RNA_POL_M_15KD PF02150.16 gi|383319700|ref|YP_005380541.1| - 0.0074 16.1 8.9 0.61 10.0 0.0 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.6 gi|383319700|ref|YP_005380541.1| - 0.026 14.3 11.6 1.6 8.6 1.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-AN1 PF01428.16 gi|383319700|ref|YP_005380541.1| - 0.032 14.4 3.5 9.1 6.5 0.1 3.1 3 0 0 3 3 3 0 AN1-like Zinc finger zf-RING_7 PF02591.15 gi|383319700|ref|YP_005380541.1| - 0.05 13.8 3.7 3.9 7.7 0.1 2.8 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-IS66 PF13005.7 gi|383319700|ref|YP_005380541.1| - 0.052 13.9 2.3 13 6.3 0.0 3.1 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Terminase_GpA PF05876.12 gi|383319700|ref|YP_005380541.1| - 0.053 12.1 2.0 0.074 11.6 2.0 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) eIF-5_eIF-2B PF01873.17 gi|383319700|ref|YP_005380541.1| - 0.16 11.8 3.1 0.31 10.9 0.5 2.1 2 0 0 2 2 2 0 Domain found in IF2B/IF5 ADD_ATRX PF17981.1 gi|383319700|ref|YP_005380541.1| - 0.17 11.8 4.7 8.8 6.3 0.2 3.0 2 1 1 3 3 3 0 Cysteine Rich ADD domain Zn_ribbon_SprT PF17283.2 gi|383319700|ref|YP_005380541.1| - 0.17 11.8 4.7 15 5.6 0.1 3.2 3 0 0 3 3 3 0 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|383319700|ref|YP_005380541.1| - 0.24 10.9 7.7 0.19 11.2 2.7 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding YhfH PF14149.6 gi|383319700|ref|YP_005380541.1| - 0.24 11.4 7.9 6.8 6.8 0.0 3.3 3 0 0 3 3 3 0 YhfH-like protein zf-H2C2_2 PF13465.6 gi|383319700|ref|YP_005380541.1| - 0.27 11.8 4.7 22 5.7 0.1 3.1 3 0 0 3 3 3 0 Zinc-finger double domain Nudix_N_2 PF14803.6 gi|383319700|ref|YP_005380541.1| - 0.31 11.0 5.7 1.1 9.2 1.7 2.9 2 1 0 2 2 2 0 Nudix N-terminal Ogr_Delta PF04606.12 gi|383319700|ref|YP_005380541.1| - 0.31 11.0 3.1 0.16 12.0 0.6 1.8 2 0 0 2 2 1 0 Ogr/Delta-like zinc finger CpXC PF14353.6 gi|383319700|ref|YP_005380541.1| - 0.32 11.0 7.3 1.1 9.4 1.7 2.6 1 1 0 2 2 2 0 CpXC protein zf-C2H2_3 PF13878.6 gi|383319700|ref|YP_005380541.1| - 0.34 10.8 3.5 19 5.1 0.1 3.1 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO Rubredoxin_2 PF18073.1 gi|383319700|ref|YP_005380541.1| - 0.37 10.6 13.6 4.9 7.0 0.7 3.2 3 0 0 3 3 3 0 Rubredoxin metal binding domain DZR PF12773.7 gi|383319700|ref|YP_005380541.1| - 0.38 10.8 7.0 23 5.1 7.1 2.4 1 1 0 1 1 1 0 Double zinc ribbon Desulfoferrod_N PF06397.12 gi|383319700|ref|YP_005380541.1| - 0.51 10.0 6.3 12 5.6 0.1 3.1 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-tcix PF14952.6 gi|383319700|ref|YP_005380541.1| - 0.91 9.2 9.3 6.2 6.5 0.3 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-C2H2_4 PF13894.6 gi|383319700|ref|YP_005380541.1| - 1 10.4 8.8 2.2 9.3 0.5 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger zf-RRN7 PF11781.8 gi|383319700|ref|YP_005380541.1| - 1 9.1 8.4 12 5.7 0.1 3.2 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF35_N PF12172.8 gi|383319700|ref|YP_005380541.1| - 1.1 9.2 6.0 39 4.3 0.1 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ISL3 PF14690.6 gi|383319700|ref|YP_005380541.1| - 1.2 9.9 9.0 1.5 9.5 0.2 3.0 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf_UBZ PF18439.1 gi|383319700|ref|YP_005380541.1| - 1.3 8.6 6.7 11 5.7 0.1 3.0 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-ACC PF17848.1 gi|383319700|ref|YP_005380541.1| - 1.5 9.0 11.3 2.2 8.4 0.8 3.2 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain DUF3797 PF12677.7 gi|383319700|ref|YP_005380541.1| - 1.9 8.5 6.6 1.5 8.8 3.7 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF3797) zf-C2H2_11 PF16622.5 gi|383319700|ref|YP_005380541.1| - 2.2 8.1 8.8 14 5.5 0.4 3.1 3 0 0 3 3 3 0 zinc-finger C2H2-type Sgf11 PF08209.11 gi|383319700|ref|YP_005380541.1| - 3.4 7.3 8.2 5.7 6.6 0.2 2.9 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-TFIIB PF13453.6 gi|383319700|ref|YP_005380541.1| - 3.5 7.0 9.4 0.58 9.5 4.0 2.4 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-3CxxC_2 PF17180.4 gi|383319700|ref|YP_005380541.1| - 3.7 8.4 10.0 3.4 8.5 1.6 3.0 2 1 1 3 3 3 0 Zinc-binding domain UPF0547 PF10571.9 gi|383319700|ref|YP_005380541.1| - 5.6 7.1 9.9 6.9 6.9 0.8 2.9 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-C2HE PF16278.5 gi|383319700|ref|YP_005380541.1| - 5.7 7.5 7.8 94 3.6 3.0 3.1 2 1 0 2 2 2 0 C2HE / C2H2 / C2HC zinc-binding finger zf-Mss51 PF13824.6 gi|383319700|ref|YP_005380541.1| - 6 7.1 7.6 13 5.9 0.4 3.0 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2 PF00096.26 gi|383319700|ref|YP_005380541.1| - 8.9 7.0 9.3 13 6.4 0.4 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type PCNA_N PF00705.18 gi|383319701|ref|YP_005380542.1| - 1.8e-14 53.5 0.8 3.2e-14 52.7 0.4 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|383319701|ref|YP_005380542.1| - 7.8e-11 42.2 0.0 9.7e-09 35.5 0.0 2.7 2 2 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|383319701|ref|YP_005380542.1| - 0.0026 16.8 0.0 0.28 10.2 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 DNA_pol3_beta PF00712.19 gi|383319701|ref|YP_005380542.1| - 0.0037 17.4 0.2 0.091 12.9 0.1 2.8 2 1 0 2 2 2 1 DNA polymerase III beta subunit, N-terminal domain Rad9 PF04139.13 gi|383319701|ref|YP_005380542.1| - 0.006 16.1 0.0 0.011 15.2 0.0 1.4 2 0 0 2 2 2 1 Rad9 Mrr_cat PF04471.12 gi|383319702|ref|YP_005380543.1| - 0.00013 21.9 0.0 0.00017 21.6 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease Hjc PF01870.18 gi|383319702|ref|YP_005380543.1| - 0.098 12.7 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) CBS PF00571.28 gi|383319703|ref|YP_005380544.1| - 7.5e-43 144.8 13.7 1.9e-14 53.9 1.7 4.3 4 0 0 4 4 4 4 CBS domain Glyco_hydro81C PF17652.1 gi|383319703|ref|YP_005380544.1| - 0.0059 15.9 0.0 9.4 5.4 0.0 3.2 3 0 0 3 3 3 2 Glycosyl hydrolase family 81 C-terminal domain PduV-EutP PF10662.9 gi|383319703|ref|YP_005380544.1| - 0.14 11.9 0.3 2.4 7.9 0.0 2.7 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation DUF4446 PF14584.6 gi|383319704|ref|YP_005380545.1| - 0.0085 16.1 1.0 0.0085 16.1 1.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF4446) T2SSF PF00482.23 gi|383319704|ref|YP_005380545.1| - 0.0086 16.0 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F Ly49 PF08391.10 gi|383319704|ref|YP_005380545.1| - 0.0098 16.2 0.7 0.0098 16.2 0.7 1.5 2 0 0 2 2 2 1 Ly49-like protein, N-terminal region IgaA PF07095.11 gi|383319704|ref|YP_005380545.1| - 0.021 12.8 0.3 0.03 12.3 0.1 1.3 1 1 0 1 1 1 0 Intracellular growth attenuator protein IgaA GD_N PF16030.5 gi|383319704|ref|YP_005380545.1| - 0.024 14.9 1.1 0.042 14.2 1.1 1.4 1 0 0 1 1 1 0 Serine protease gd N-terminus JIP_LZII PF16471.5 gi|383319704|ref|YP_005380545.1| - 0.59 10.3 5.5 0.16 12.1 1.5 2.1 2 1 0 2 2 2 0 JNK-interacting protein leucine zipper II NEMO PF11577.8 gi|383319704|ref|YP_005380545.1| - 0.73 9.9 0.1 0.73 9.9 0.1 3.2 2 1 1 3 3 3 0 NF-kappa-B essential modulator NEMO RuvB_N PF05496.12 gi|383319705|ref|YP_005380546.1| - 7.7e-84 279.2 0.1 1.2e-83 278.6 0.1 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_4 PF17864.1 gi|383319705|ref|YP_005380546.1| - 3.4e-32 110.0 1.2 8e-32 108.8 1.2 1.7 1 0 0 1 1 1 1 RuvB AAA lid domain RuvB_C PF05491.13 gi|383319705|ref|YP_005380546.1| - 2.8e-26 91.2 0.0 5.8e-26 90.2 0.0 1.6 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain AAA PF00004.29 gi|383319705|ref|YP_005380546.1| - 2.4e-21 76.6 0.0 5.9e-21 75.3 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|383319705|ref|YP_005380546.1| - 3.1e-10 40.2 0.1 1.9e-08 34.4 0.1 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|383319705|ref|YP_005380546.1| - 7.2e-06 25.4 0.2 4.9e-05 22.7 0.0 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain DUF815 PF05673.13 gi|383319705|ref|YP_005380546.1| - 2.6e-05 23.5 0.0 0.003 16.8 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|383319705|ref|YP_005380546.1| - 2.7e-05 23.7 0.3 0.024 14.0 0.0 2.5 1 1 2 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|383319705|ref|YP_005380546.1| - 6.7e-05 23.3 0.1 0.0011 19.4 0.0 2.5 2 1 1 3 3 3 1 AAA ATPase domain Rad17 PF03215.15 gi|383319705|ref|YP_005380546.1| - 0.00015 21.8 0.0 0.00022 21.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain Sigma54_activat PF00158.26 gi|383319705|ref|YP_005380546.1| - 0.00028 20.6 0.0 0.65 9.7 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 gi|383319705|ref|YP_005380546.1| - 0.00056 20.2 1.2 0.21 11.8 0.0 3.2 1 1 2 3 3 3 1 AAA domain AAA_3 PF07726.11 gi|383319705|ref|YP_005380546.1| - 0.00056 19.8 0.0 0.013 15.3 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|383319705|ref|YP_005380546.1| - 0.00066 20.0 0.0 0.0011 19.3 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_14 PF13173.6 gi|383319705|ref|YP_005380546.1| - 0.00073 19.6 0.0 0.0017 18.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|383319705|ref|YP_005380546.1| - 0.0009 19.2 0.2 0.089 12.7 0.0 2.4 2 0 0 2 2 2 1 NTPase NB-ARC PF00931.22 gi|383319705|ref|YP_005380546.1| - 0.0015 17.8 0.0 0.019 14.1 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain TsaE PF02367.17 gi|383319705|ref|YP_005380546.1| - 0.0025 17.8 0.0 0.0045 17.0 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|383319705|ref|YP_005380546.1| - 0.0036 17.9 0.0 0.012 16.1 0.0 2.0 2 0 0 2 2 1 1 AAA domain MCM PF00493.23 gi|383319705|ref|YP_005380546.1| - 0.013 14.6 0.1 0.84 8.7 0.1 2.3 1 1 0 1 1 1 0 MCM P-loop domain AAA_33 PF13671.6 gi|383319705|ref|YP_005380546.1| - 0.014 15.6 0.0 0.046 13.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|383319705|ref|YP_005380546.1| - 0.016 14.8 0.2 0.35 10.4 0.0 2.4 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|383319705|ref|YP_005380546.1| - 0.016 14.9 0.1 0.039 13.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|383319705|ref|YP_005380546.1| - 0.021 15.0 0.0 0.032 14.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.12 gi|383319705|ref|YP_005380546.1| - 0.023 14.6 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.15 gi|383319705|ref|YP_005380546.1| - 0.043 13.8 0.0 4.4 7.3 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Bac_DnaA PF00308.18 gi|383319705|ref|YP_005380546.1| - 0.048 13.5 0.0 0.35 10.7 0.0 2.2 3 0 0 3 3 2 0 Bacterial dnaA protein AAA_19 PF13245.6 gi|383319705|ref|YP_005380546.1| - 0.061 13.7 0.3 0.73 10.2 0.0 2.2 1 1 1 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|383319705|ref|YP_005380546.1| - 0.07 12.8 0.1 0.19 11.4 0.1 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.6 gi|383319705|ref|YP_005380546.1| - 0.082 13.3 0.0 0.28 11.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain HTH_15 PF12324.8 gi|383319705|ref|YP_005380546.1| - 0.093 12.7 0.1 0.45 10.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase ABC_tran PF00005.27 gi|383319705|ref|YP_005380546.1| - 0.1 13.1 0.0 0.2 12.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter T2SSE PF00437.20 gi|383319705|ref|YP_005380546.1| - 0.11 11.5 0.0 0.28 10.2 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein Parvo_NS1 PF01057.17 gi|383319705|ref|YP_005380546.1| - 0.23 10.5 0.0 0.37 9.8 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 RuvA_N PF01330.21 gi|383319706|ref|YP_005380547.1| - 2.4e-19 69.2 0.2 1.1e-18 67.1 0.0 2.1 2 1 0 2 2 2 1 RuvA N terminal domain HHH_5 PF14520.6 gi|383319706|ref|YP_005380547.1| - 9.9e-18 64.5 1.2 9.9e-18 64.5 1.2 1.9 2 1 0 2 2 2 1 Helix-hairpin-helix domain RuvA_C PF07499.13 gi|383319706|ref|YP_005380547.1| - 3.8e-09 36.8 2.0 3.8e-09 36.8 2.0 1.7 2 0 0 2 2 2 1 RuvA, C-terminal domain HHH PF00633.23 gi|383319706|ref|YP_005380547.1| - 4.5e-07 29.4 1.2 0.04 13.8 0.1 3.3 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|383319706|ref|YP_005380547.1| - 0.00023 21.4 0.2 0.3 11.4 0.0 2.8 1 1 0 2 2 2 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|383319706|ref|YP_005380547.1| - 0.0029 17.4 0.0 1.8 8.4 0.0 2.6 2 0 0 2 2 2 2 Fingers domain of DNA polymerase lambda Transposase_20 PF02371.16 gi|383319706|ref|YP_005380547.1| - 0.0035 17.6 0.4 1.2 9.5 0.1 2.4 2 0 0 2 2 2 2 Transposase IS116/IS110/IS902 family HHH_2 PF12826.7 gi|383319706|ref|YP_005380547.1| - 0.007 16.4 0.1 1.7 8.8 0.0 2.6 1 1 1 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|383319706|ref|YP_005380547.1| - 0.094 13.3 0.7 2 9.1 0.1 2.3 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Cdd1 PF11731.8 gi|383319706|ref|YP_005380547.1| - 0.18 12.0 0.0 3.1 8.1 0.0 2.6 3 0 0 3 3 3 0 Pathogenicity locus RuvC PF02075.17 gi|383319707|ref|YP_005380548.1| - 4.4e-55 185.7 0.1 5e-55 185.5 0.1 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC DUF3882 PF07066.11 gi|383319707|ref|YP_005380548.1| - 0.09 12.8 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Lactococcus phage M3 protein HEAT_EZ PF13513.6 gi|383319708|ref|YP_005380549.1| - 0.0002 21.8 0.1 2.1 8.9 0.0 4.3 4 1 0 4 4 4 2 HEAT-like repeat HEAT_2 PF13646.6 gi|383319708|ref|YP_005380549.1| - 0.00035 20.9 0.4 0.036 14.4 0.0 3.1 1 1 1 3 3 3 2 HEAT repeats Adaptin_N PF01602.20 gi|383319708|ref|YP_005380549.1| - 0.00041 19.1 0.4 0.091 11.3 0.0 2.0 1 1 1 2 2 2 2 Adaptin N terminal region zf-ZPR1 PF03367.13 gi|383319709|ref|YP_005380550.1| - 3e-34 118.2 0.0 3.6e-34 117.9 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain TF_Zn_Ribbon PF08271.12 gi|383319709|ref|YP_005380550.1| - 0.045 13.3 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding SepF PF04472.12 gi|383319710|ref|YP_005380551.1| - 2.9e-11 43.5 0.4 4.3e-11 42.9 0.4 1.3 1 0 0 1 1 1 1 Cell division protein SepF PUA PF01472.20 gi|383319711|ref|YP_005380552.1| - 1.2e-19 70.0 2.6 2.1e-19 69.3 2.6 1.4 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|383319711|ref|YP_005380552.1| - 4.7e-08 33.2 0.0 8.3e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) Pre-PUA PF17832.1 gi|383319711|ref|YP_005380552.1| - 2.4e-05 25.0 0.0 4.3e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Pre-PUA-like domain UPF0113 PF03657.13 gi|383319711|ref|YP_005380552.1| - 0.0026 18.0 0.1 0.0049 17.1 0.1 1.5 1 0 0 1 1 1 1 UPF0113 PUA domain V-ATPase_G_2 PF16999.5 gi|383319713|ref|YP_005380554.1| - 1.6e-16 60.6 7.4 1.8e-16 60.4 7.4 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|383319713|ref|YP_005380554.1| - 5.1e-05 23.4 2.4 6.4e-05 23.0 2.4 1.1 1 0 0 1 1 1 1 DivIVA protein V_ATPase_I PF01496.19 gi|383319714|ref|YP_005380555.1| - 6.7e-26 90.5 10.5 1.2e-16 59.9 0.1 3.2 3 0 0 3 3 3 3 V-type ATPase 116kDa subunit family PAS PF00989.25 gi|383319715|ref|YP_005380556.1| - 2.3e-40 137.1 0.0 2.3e-16 59.8 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|383319715|ref|YP_005380556.1| - 1.1e-38 131.6 0.6 1.8e-15 57.0 0.0 3.3 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|383319715|ref|YP_005380556.1| - 1.2e-36 125.3 0.0 3.7e-14 52.9 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|383319715|ref|YP_005380556.1| - 5.2e-33 113.2 0.1 7.7e-16 58.2 0.0 3.6 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|383319715|ref|YP_005380556.1| - 6.6e-22 77.1 0.0 4.5e-08 32.9 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_7 PF12860.7 gi|383319715|ref|YP_005380556.1| - 2.2e-09 37.5 0.1 0.089 13.0 0.0 4.6 3 2 0 3 3 3 2 PAS fold PAS_11 PF14598.6 gi|383319715|ref|YP_005380556.1| - 4.7e-06 26.7 0.0 0.055 13.6 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.6 gi|383319715|ref|YP_005380556.1| - 3.8e-05 24.2 0.2 0.055 14.1 0.0 3.3 3 0 0 3 3 3 1 PAS domain TrmB PF01978.19 gi|383319715|ref|YP_005380556.1| - 0.0016 18.3 0.1 0.0046 16.8 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TBPIP PF07106.13 gi|383319715|ref|YP_005380556.1| - 0.0018 18.2 0.1 0.0046 16.9 0.1 1.8 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain HTH_24 PF13412.6 gi|383319715|ref|YP_005380556.1| - 0.0028 17.2 0.0 0.015 14.9 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Mnd1 PF03962.15 gi|383319715|ref|YP_005380556.1| - 0.0042 17.3 0.1 0.011 16.0 0.1 1.7 1 0 0 1 1 1 1 Mnd1 HTH domain Peptidase_S30 PF01577.16 gi|383319715|ref|YP_005380556.1| - 0.0059 16.2 0.9 0.75 9.4 0.1 2.3 2 0 0 2 2 2 1 Potyvirus P1 protease HTH_IclR PF09339.10 gi|383319715|ref|YP_005380556.1| - 0.006 16.4 0.0 0.017 14.9 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_40 PF14493.6 gi|383319715|ref|YP_005380556.1| - 0.0064 16.9 0.0 0.0064 16.9 0.0 3.2 4 1 0 4 4 3 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|383319715|ref|YP_005380556.1| - 0.038 13.8 0.0 0.092 12.6 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain ZNRF_3_ecto PF18212.1 gi|383319715|ref|YP_005380556.1| - 0.06 13.3 0.1 14 5.7 0.0 2.4 2 0 0 2 2 2 0 ZNRF-3 Ectodomain PAS_12 PF18095.1 gi|383319715|ref|YP_005380556.1| - 0.066 12.9 0.1 38 3.9 0.1 3.2 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain HTH_26 PF13443.6 gi|383319715|ref|YP_005380556.1| - 0.11 12.9 0.1 15 6.1 0.0 3.4 3 1 1 4 4 4 0 Cro/C1-type HTH DNA-binding domain MEKHLA PF08670.11 gi|383319715|ref|YP_005380556.1| - 0.14 12.1 0.0 5.7 6.8 0.0 2.7 2 1 1 3 3 3 0 MEKHLA domain DUF2120 PF09893.9 gi|383319715|ref|YP_005380556.1| - 0.16 12.1 4.8 0.13 12.3 0.7 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) DUF1910 PF08928.10 gi|383319716|ref|YP_005380557.1| - 0.02 14.9 0.1 0.18 11.8 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1910) ROK PF00480.20 gi|383319716|ref|YP_005380557.1| - 0.031 13.8 0.3 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 ROK family SNO PF01174.19 gi|383319717|ref|YP_005380558.1| - 2.7e-53 180.6 0.0 3e-53 180.5 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|383319717|ref|YP_005380558.1| - 3.3e-12 46.4 0.0 5.1e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|383319717|ref|YP_005380558.1| - 7.9e-07 28.9 0.0 1.2e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 gi|383319717|ref|YP_005380558.1| - 9.7e-06 25.5 0.0 2.4e-05 24.2 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|383319717|ref|YP_005380558.1| - 0.0048 16.7 0.1 0.016 15.0 0.0 1.8 2 0 0 2 2 2 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|383319717|ref|YP_005380558.1| - 0.066 13.0 0.1 0.53 10.0 0.1 2.5 1 1 0 1 1 1 0 Peptidase C26 Prenyltrans PF00432.21 gi|383319718|ref|YP_005380559.1| - 1.4e-16 59.9 1.9 0.0032 17.2 0.0 4.8 4 1 0 4 4 4 4 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_C PF13243.6 gi|383319718|ref|YP_005380559.1| - 2.1e-12 46.8 0.5 4.8e-07 29.2 0.0 3.1 2 1 1 3 3 3 3 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 gi|383319718|ref|YP_005380559.1| - 2.1e-07 30.4 0.0 0.0017 17.5 0.0 3.1 3 0 0 3 3 3 3 Squalene-hopene cyclase N-terminal domain TED_complement PF07678.14 gi|383319718|ref|YP_005380559.1| - 3.1e-06 26.4 0.0 1.2 8.1 0.0 4.1 2 1 2 4 4 4 4 A-macroglobulin TED domain Mago-bind PF09282.10 gi|383319718|ref|YP_005380559.1| - 0.0068 16.3 0.0 0.17 11.8 0.0 2.5 3 0 0 3 3 3 1 Mago binding Hydrolase_4 PF12146.8 gi|383319719|ref|YP_005380560.1| - 2.5e-10 40.0 0.1 6.9e-08 32.0 0.1 2.6 1 1 1 2 2 2 2 Serine aminopeptidase, S33 AXE1 PF05448.12 gi|383319719|ref|YP_005380560.1| - 3.7e-09 35.7 0.0 4.9e-09 35.3 0.0 1.1 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.20 gi|383319719|ref|YP_005380560.1| - 5.3e-07 29.5 0.0 7.3e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.18 gi|383319719|ref|YP_005380560.1| - 6.6e-06 25.8 0.0 1.1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|383319719|ref|YP_005380560.1| - 2.2e-05 24.1 0.6 0.00023 20.7 0.6 2.2 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|383319719|ref|YP_005380560.1| - 3.3e-05 24.6 0.1 4.3e-05 24.2 0.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 gi|383319719|ref|YP_005380560.1| - 0.00021 21.0 0.0 0.00033 20.3 0.0 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.20 gi|383319719|ref|YP_005380560.1| - 0.013 15.2 0.0 0.16 11.6 0.0 2.1 2 0 0 2 2 2 0 Putative esterase Abhydrolase_3 PF07859.13 gi|383319719|ref|YP_005380560.1| - 0.017 15.0 0.1 0.067 13.0 0.0 1.8 2 1 0 2 2 2 0 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|383319719|ref|YP_005380560.1| - 0.071 13.0 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF4393 PF14337.6 gi|383319720|ref|YP_005380561.1| - 0.011 15.5 0.5 0.057 13.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4393) Cas_APE2256 PF09651.10 gi|383319720|ref|YP_005380561.1| - 0.075 12.9 0.1 0.14 12.1 0.1 1.6 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) HTH_27 PF13463.6 gi|383319720|ref|YP_005380561.1| - 0.093 13.2 0.1 0.26 11.8 0.1 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|383319720|ref|YP_005380561.1| - 0.14 12.3 0.1 0.32 11.1 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|383319721|ref|YP_005380562.1| - 3.3e-15 56.8 0.8 4.8e-15 56.3 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|383319721|ref|YP_005380562.1| - 1.1e-06 29.1 0.2 2.8e-06 27.7 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|383319721|ref|YP_005380562.1| - 2.4e-05 24.7 0.0 7e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|383319721|ref|YP_005380562.1| - 0.0044 17.1 0.0 0.011 15.8 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Nitro_FeMo-Co PF02579.17 gi|383319722|ref|YP_005380563.1| - 9.8e-21 73.9 0.7 1.1e-20 73.7 0.7 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Usp PF00582.26 gi|383319724|ref|YP_005380565.1| - 9.3e-35 120.2 1.6 1.5e-34 119.5 1.6 1.3 1 1 0 1 1 1 1 Universal stress protein family PTE PF02126.18 gi|383319724|ref|YP_005380565.1| - 0.031 13.7 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 Phosphotriesterase family Toprim_4 PF13662.6 gi|383319724|ref|YP_005380565.1| - 0.038 14.5 0.3 0.59 10.6 0.0 2.3 2 0 0 2 2 2 0 Toprim domain Phage_CI_repr PF07022.13 gi|383319724|ref|YP_005380565.1| - 0.12 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Nramp PF01566.18 gi|383319725|ref|YP_005380566.1| - 1e-96 324.1 29.7 1e-96 324.1 29.7 1.4 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein MgtE_N PF03448.17 gi|383319726|ref|YP_005380567.1| - 4.3e-25 88.3 5.7 5.1e-25 88.0 3.4 2.1 2 0 0 2 2 2 1 MgtE intracellular N domain CBS PF00571.28 gi|383319726|ref|YP_005380567.1| - 3.7e-19 68.9 4.8 6.3e-09 36.1 0.0 4.2 5 0 0 5 5 5 2 CBS domain FliG_M PF14841.6 gi|383319726|ref|YP_005380567.1| - 3.5e-07 30.3 2.8 0.002 18.3 0.2 4.0 3 1 1 4 4 4 2 FliG middle domain PRC PF05239.16 gi|383319726|ref|YP_005380567.1| - 1e-05 25.5 4.7 5.5e-05 23.2 0.3 3.1 3 0 0 3 3 3 1 PRC-barrel domain FliG_C PF01706.16 gi|383319726|ref|YP_005380567.1| - 0.0028 17.8 1.9 0.012 15.8 1.0 2.4 1 1 1 2 2 2 1 FliG C-terminal domain FliG_N PF14842.6 gi|383319726|ref|YP_005380567.1| - 0.14 12.7 4.5 2.9 8.5 0.0 3.5 3 1 1 4 4 4 0 FliG N-terminal domain AsnC_trans_reg PF01037.21 gi|383319727|ref|YP_005380568.1| - 1.6e-17 63.2 0.1 2.5e-17 62.6 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|383319727|ref|YP_005380568.1| - 3.1e-15 55.4 0.7 5e-15 54.8 0.7 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|383319727|ref|YP_005380568.1| - 5.7e-12 45.3 3.1 5.7e-12 45.3 3.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|383319727|ref|YP_005380568.1| - 3e-05 23.8 0.1 5.1e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|383319727|ref|YP_005380568.1| - 9.1e-05 22.3 0.1 0.00015 21.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|383319727|ref|YP_005380568.1| - 0.00015 21.8 0.4 0.00031 20.7 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|383319727|ref|YP_005380568.1| - 0.0004 20.3 0.2 0.00091 19.1 0.2 1.6 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|383319727|ref|YP_005380568.1| - 0.0004 20.1 0.4 0.00073 19.3 0.4 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|383319727|ref|YP_005380568.1| - 0.00059 19.7 0.7 0.0031 17.4 0.0 2.2 3 0 0 3 3 2 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|383319727|ref|YP_005380568.1| - 0.0054 16.4 0.7 0.01 15.5 0.3 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 AsnC_trans_reg2 PF17805.1 gi|383319727|ref|YP_005380568.1| - 0.0064 16.6 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 AsnC-like ligand binding domain LexA_DNA_bind PF01726.16 gi|383319727|ref|YP_005380568.1| - 0.0089 15.8 0.1 0.017 14.9 0.1 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_27 PF13463.6 gi|383319727|ref|YP_005380568.1| - 0.025 15.1 0.3 0.064 13.8 0.3 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|383319727|ref|YP_005380568.1| - 0.031 14.5 0.3 0.078 13.2 0.1 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.9 gi|383319727|ref|YP_005380568.1| - 0.046 13.8 0.9 0.45 10.7 0.1 2.4 2 1 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Mga PF08280.11 gi|383319727|ref|YP_005380568.1| - 0.078 13.0 0.1 0.17 11.9 0.1 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.6 gi|383319727|ref|YP_005380568.1| - 0.09 12.8 0.4 0.38 10.8 0.2 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_19 PF12844.7 gi|383319727|ref|YP_005380568.1| - 0.091 12.8 0.7 0.19 11.8 0.7 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain FeoC PF09012.10 gi|383319727|ref|YP_005380568.1| - 0.094 12.8 0.1 0.17 12.0 0.1 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_31 PF13560.6 gi|383319727|ref|YP_005380568.1| - 0.11 12.8 0.2 0.21 12.0 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|383319727|ref|YP_005380568.1| - 0.11 12.3 0.2 0.2 11.5 0.2 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.12 gi|383319727|ref|YP_005380568.1| - 0.14 12.0 0.1 0.28 11.0 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain DUF1059 PF06348.11 gi|383319728|ref|YP_005380569.1| - 1.1e-08 35.1 0.5 1.5e-08 34.7 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) SWIM PF04434.17 gi|383319729|ref|YP_005380570.1| - 0.00035 20.2 0.4 0.00066 19.3 0.4 1.5 1 0 0 1 1 1 1 SWIM zinc finger Radical_SAM PF04055.21 gi|383319730|ref|YP_005380571.1| - 1.2e-15 58.2 3.2 1e-14 55.3 0.0 2.7 2 1 1 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|383319730|ref|YP_005380571.1| - 4.8e-09 36.6 0.0 1.1e-08 35.4 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|383319730|ref|YP_005380571.1| - 6.1e-05 23.1 0.0 0.00013 22.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2284 PF10050.9 gi|383319731|ref|YP_005380572.1| - 4.6e-51 172.8 0.0 6.2e-51 172.4 0.0 1.2 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) KGG PF10685.9 gi|383319732|ref|YP_005380573.1| - 7e-08 32.5 2.2 0.0043 17.3 0.0 2.4 2 0 0 2 2 2 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|383319732|ref|YP_005380573.1| - 9.8e-05 22.8 3.1 0.0001 22.7 3.1 1.1 1 0 0 1 1 1 1 Small hydrophilic plant seed protein SASP PF00269.20 gi|383319732|ref|YP_005380573.1| - 0.00034 20.6 3.0 0.074 13.1 0.7 2.0 2 0 0 2 2 2 2 Small, acid-soluble spore proteins, alpha/beta type MFS_1 PF07690.16 gi|383319733|ref|YP_005380574.1| - 5.5e-38 130.8 51.5 3.8e-30 105.0 42.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|383319733|ref|YP_005380574.1| - 4.9e-10 38.8 31.0 5.3e-05 22.2 5.9 2.1 1 1 1 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|383319733|ref|YP_005380574.1| - 4.1e-09 35.4 19.0 1.6e-07 30.1 19.0 2.3 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 gi|383319733|ref|YP_005380574.1| - 3.2e-08 32.6 33.6 9.3e-05 21.1 10.8 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.24 gi|383319733|ref|YP_005380574.1| - 0.0035 16.3 32.9 0.035 13.0 10.1 2.5 2 0 0 2 2 2 2 Sugar (and other) transporter DUF2769 PF10967.8 gi|383319734|ref|YP_005380575.1| - 2.2e-12 47.5 8.5 3e-12 47.0 8.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) zf-Paramyx-P PF13008.7 gi|383319734|ref|YP_005380575.1| - 0.046 13.2 9.0 0.15 11.5 1.7 2.3 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein Fer2 PF00111.27 gi|383319734|ref|YP_005380575.1| - 2.2 8.3 9.0 5.7 7.0 1.1 2.2 1 1 1 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Radical_SAM PF04055.21 gi|383319735|ref|YP_005380576.1| - 3e-13 50.5 0.0 4.2e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|383319735|ref|YP_005380576.1| - 0.13 12.0 2.4 5.6 6.6 4.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) Nre_N PF04894.12 gi|383319736|ref|YP_005380577.1| - 1.4e-93 313.6 0.0 1.9e-93 313.2 0.0 1.2 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|383319736|ref|YP_005380577.1| - 1.4e-38 131.1 0.1 2.3e-38 130.5 0.1 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Prenyltransf PF01255.19 gi|383319737|ref|YP_005380578.1| - 1.7e-67 227.2 0.0 2.1e-67 226.9 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF2551 PF10826.8 gi|383319738|ref|YP_005380579.1| - 1.3e-27 95.8 0.1 1.6e-27 95.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) PKI PF02827.16 gi|383319738|ref|YP_005380579.1| - 0.088 13.0 0.0 0.15 12.3 0.0 1.4 1 1 0 1 1 1 0 cAMP-dependent protein kinase inhibitor Radical_SAM PF04055.21 gi|383319739|ref|YP_005380580.1| - 1.6e-07 31.8 0.1 4.9e-07 30.3 0.1 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|383319739|ref|YP_005380580.1| - 4.5e-05 23.6 0.0 0.00011 22.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|383319739|ref|YP_005380580.1| - 0.0035 17.6 2.6 0.02 15.2 2.6 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Ribul_P_3_epim PF00834.19 gi|383319739|ref|YP_005380580.1| - 0.2 11.0 0.0 0.33 10.3 0.0 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DUF3834 PF12916.7 gi|383319740|ref|YP_005380581.1| - 0.042 13.1 0.0 0.063 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) PNP_UDP_1 PF01048.20 gi|383319741|ref|YP_005380582.1| - 1.3e-44 152.2 0.0 1.6e-44 152.0 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pribosyltran PF00156.27 gi|383319742|ref|YP_005380583.1| - 6.1e-19 68.1 0.0 8.1e-19 67.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DUF211 PF02680.14 gi|383319743|ref|YP_005380584.1| - 5.6e-39 132.2 3.4 6.3e-39 132.0 3.4 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 VIT1 PF01988.19 gi|383319744|ref|YP_005380585.1| - 2.3e-16 60.3 19.9 5.9e-11 42.7 5.4 2.0 1 1 1 2 2 2 2 VIT family DUF3382 PF11862.8 gi|383319744|ref|YP_005380585.1| - 1.3 9.4 6.3 1.5 9.2 3.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3382) AbiEi_4 PF13338.6 gi|383319746|ref|YP_005380587.1| - 0.037 14.2 0.0 0.075 13.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HATPase_c PF02518.26 gi|383319747|ref|YP_005380588.1| - 2.3e-18 66.7 0.0 8e-18 65.0 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|383319747|ref|YP_005380588.1| - 7.2e-13 48.7 0.0 3e-12 46.7 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|383319747|ref|YP_005380588.1| - 1.6e-12 47.4 0.1 4.9e-12 45.8 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|383319747|ref|YP_005380588.1| - 1.1e-09 38.5 0.0 2.1e-09 37.6 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|383319747|ref|YP_005380588.1| - 7.8e-05 22.6 0.0 0.00016 21.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|383319747|ref|YP_005380588.1| - 9.5e-05 22.6 0.0 0.00021 21.5 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_10 PF13596.6 gi|383319747|ref|YP_005380588.1| - 0.0013 19.3 0.0 0.003 18.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain Mitofilin PF09731.9 gi|383319747|ref|YP_005380588.1| - 0.0058 15.5 1.1 0.0082 15.0 1.1 1.1 1 0 0 1 1 1 1 Mitochondrial inner membrane protein ZnuA PF01297.17 gi|383319747|ref|YP_005380588.1| - 0.021 14.2 0.3 0.04 13.3 0.3 1.4 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic PAS_8 PF13188.7 gi|383319747|ref|YP_005380588.1| - 0.051 13.6 0.0 0.17 11.9 0.0 1.9 1 0 0 1 1 1 0 PAS domain HATPase_c_5 PF14501.6 gi|383319747|ref|YP_005380588.1| - 0.094 12.6 0.0 0.46 10.4 0.0 2.1 1 1 0 1 1 1 0 GHKL domain SF-assemblin PF06705.11 gi|383319747|ref|YP_005380588.1| - 0.11 11.8 5.7 0.17 11.2 5.7 1.2 1 0 0 1 1 1 0 SF-assemblin/beta giardin Baculo_PEP_C PF04513.12 gi|383319747|ref|YP_005380588.1| - 0.22 11.6 2.6 0.93 9.5 0.9 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus ApoLp-III PF07464.11 gi|383319747|ref|YP_005380588.1| - 0.24 11.5 3.4 13 5.9 0.1 2.4 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) HK97-gp10_like PF04883.12 gi|383319747|ref|YP_005380588.1| - 0.42 11.6 1.8 7.2 7.7 0.5 2.9 2 1 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component HisKA PF00512.25 gi|383319747|ref|YP_005380588.1| - 0.68 10.0 3.1 2.9 8.0 0.1 2.9 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain OmpH PF03938.14 gi|383319747|ref|YP_005380588.1| - 6 7.2 10.5 37 4.6 10.5 2.1 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) HypA PF01155.19 gi|383319748|ref|YP_005380589.1| - 6.3e-05 23.0 1.0 6.3e-05 23.0 1.0 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|383319748|ref|YP_005380589.1| - 0.00037 20.6 4.1 0.00073 19.6 4.1 1.4 1 0 0 1 1 1 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|383319748|ref|YP_005380589.1| - 0.0039 17.1 1.1 1.1 9.3 0.2 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|383319748|ref|YP_005380589.1| - 0.0043 17.0 0.6 0.0047 16.9 0.6 1.2 1 0 0 1 1 1 1 zinc-ribbons DUF1451 PF07295.11 gi|383319748|ref|YP_005380589.1| - 0.0088 16.1 0.7 0.01 15.9 0.7 1.1 1 0 0 1 1 1 1 Zinc-ribbon containing domain Prok-RING_1 PF14446.6 gi|383319748|ref|YP_005380589.1| - 0.011 15.7 0.9 0.015 15.2 0.9 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C2H2 PF00096.26 gi|383319748|ref|YP_005380589.1| - 0.017 15.5 0.7 0.017 15.5 0.7 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_Tnp_IS91 PF14319.6 gi|383319748|ref|YP_005380589.1| - 0.018 15.1 0.4 0.025 14.6 0.4 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-HIT PF04438.16 gi|383319748|ref|YP_005380589.1| - 0.023 14.6 0.6 0.023 14.6 0.6 2.4 3 0 0 3 3 3 0 HIT zinc finger zf-C3HC4_3 PF13920.6 gi|383319748|ref|YP_005380589.1| - 0.046 13.6 2.3 0.067 13.1 2.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-H2C2_2 PF13465.6 gi|383319748|ref|YP_005380589.1| - 0.046 14.2 2.3 0.046 14.2 2.3 2.1 2 0 0 2 2 2 0 Zinc-finger double domain DZR PF12773.7 gi|383319748|ref|YP_005380589.1| - 0.057 13.5 3.9 0.062 13.3 3.9 1.3 1 1 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.8 gi|383319748|ref|YP_005380589.1| - 0.061 13.2 2.4 5.5 7.0 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_UBZ PF18439.1 gi|383319748|ref|YP_005380589.1| - 0.21 11.2 3.9 0.26 10.9 0.2 2.1 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger PhnA_Zn_Ribbon PF08274.12 gi|383319748|ref|YP_005380589.1| - 0.46 10.5 0.6 0.46 10.5 0.6 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-C2H2_4 PF13894.6 gi|383319748|ref|YP_005380589.1| - 0.47 11.4 3.8 0.49 11.4 0.4 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_4 PF13717.6 gi|383319748|ref|YP_005380589.1| - 0.51 10.3 7.8 0.17 11.9 0.7 2.3 2 1 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|383319748|ref|YP_005380589.1| - 0.53 10.2 7.7 1.5 8.7 2.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin_2 PF18073.1 gi|383319748|ref|YP_005380589.1| - 0.63 9.8 5.2 3.4 7.5 5.2 2.0 1 1 0 1 1 1 0 Rubredoxin metal binding domain Anti-TRAP PF15777.5 gi|383319748|ref|YP_005380589.1| - 0.86 9.6 5.1 1.9 8.5 2.9 2.0 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-C2HC_2 PF13913.6 gi|383319748|ref|YP_005380589.1| - 1.4 8.9 9.1 0.2 11.6 1.6 2.1 1 1 1 2 2 2 0 zinc-finger of a C2HC-type Zn_Tnp_IS1 PF03811.13 gi|383319748|ref|YP_005380589.1| - 1.9 8.3 7.4 6.4 6.6 0.4 2.5 2 1 0 2 2 2 0 InsA N-terminal domain zf-C2H2_6 PF13912.6 gi|383319748|ref|YP_005380589.1| - 7.4 6.7 9.7 1.2 9.2 2.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger PAS_3 PF08447.12 gi|383319751|ref|YP_005380592.1| - 2.9e-41 139.6 3.0 8.3e-19 67.7 0.1 3.3 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|383319751|ref|YP_005380592.1| - 2.4e-20 72.6 0.0 9.1e-08 32.1 0.0 3.6 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|383319751|ref|YP_005380592.1| - 1.9e-14 54.1 0.0 5.2e-14 52.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|383319751|ref|YP_005380592.1| - 3.6e-14 52.9 0.0 5.8e-08 32.9 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.7 gi|383319751|ref|YP_005380592.1| - 2.1e-09 37.2 0.2 2.4e-08 33.8 0.0 2.7 3 0 0 3 3 3 1 PAS domain PAS_4 PF08448.10 gi|383319751|ref|YP_005380592.1| - 4.8e-09 36.5 0.1 3.7e-05 23.9 0.0 3.1 3 0 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.6 gi|383319751|ref|YP_005380592.1| - 0.00032 20.6 0.0 0.00083 19.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Cyclin_C PF02984.19 gi|383319751|ref|YP_005380592.1| - 0.023 14.8 0.0 6.7 6.8 0.0 3.0 3 0 0 3 3 3 0 Cyclin, C-terminal domain PAS_12 PF18095.1 gi|383319751|ref|YP_005380592.1| - 0.068 12.8 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain Sgf11_N PF18519.1 gi|383319751|ref|YP_005380592.1| - 0.31 10.6 5.5 3.1 7.4 0.2 3.2 3 0 0 3 3 3 0 SAGA-associated factor 11 N-terminal domain Methyltrn_RNA_3 PF02598.17 gi|383319752|ref|YP_005380593.1| - 6.6e-67 226.0 0.0 7.6e-67 225.8 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|383319752|ref|YP_005380593.1| - 0.021 15.0 0.0 4.3 7.5 0.0 2.2 2 0 0 2 2 2 0 SpoU rRNA Methylase family Ribosomal_L3 PF00297.22 gi|383319753|ref|YP_005380594.1| - 5.8e-87 292.1 0.4 3.7e-86 289.4 0.4 1.8 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|383319754|ref|YP_005380595.1| - 8.6e-46 156.0 0.3 9.8e-46 155.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|383319755|ref|YP_005380596.1| - 9.3e-18 64.4 4.8 7e-17 61.6 4.8 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 ABC_transp_aux PF09822.9 gi|383319755|ref|YP_005380596.1| - 0.038 13.5 0.2 0.042 13.3 0.2 1.0 1 0 0 1 1 1 0 ABC-type uncharacterized transport system MgtE_N PF03448.17 gi|383319755|ref|YP_005380596.1| - 0.091 13.4 0.1 0.11 13.1 0.1 1.1 1 0 0 1 1 1 0 MgtE intracellular N domain Ribosomal_L2_C PF03947.18 gi|383319756|ref|YP_005380597.1| - 1.6e-45 154.4 1.5 4.3e-45 153.0 1.5 1.6 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|383319756|ref|YP_005380597.1| - 3.2e-15 55.8 1.9 3.9e-15 55.6 0.0 2.2 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain ProQ_C PF17516.2 gi|383319756|ref|YP_005380597.1| - 4.4 6.8 8.0 18 4.8 0.7 3.3 3 0 0 3 3 3 0 ProQ C-terminal domain Ribosomal_S19 PF00203.21 gi|383319757|ref|YP_005380598.1| - 2.7e-26 91.2 0.7 4.1e-26 90.7 0.7 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Myb_DNA-bind_7 PF15963.5 gi|383319757|ref|YP_005380598.1| - 0.018 14.9 0.2 0.024 14.5 0.2 1.3 1 0 0 1 1 1 0 Myb DNA-binding like COMMD1_N PF17221.3 gi|383319757|ref|YP_005380598.1| - 0.037 14.3 0.1 0.055 13.8 0.1 1.2 1 0 0 1 1 1 0 COMMD1 N-terminal domain Glyco_hydro_36N PF16875.5 gi|383319757|ref|YP_005380598.1| - 0.1 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 36 N-terminal domain Citrate_synt PF00285.21 gi|383319757|ref|YP_005380598.1| - 0.16 11.0 0.0 0.19 10.8 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Ribosomal_L22 PF00237.19 gi|383319758|ref|YP_005380599.1| - 1.7e-27 95.6 0.1 2e-27 95.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e DUF4953 PF16313.5 gi|383319758|ref|YP_005380599.1| - 0.046 12.9 0.0 0.053 12.7 0.0 1.1 1 0 0 1 1 1 0 Met-zincin HTH_10 PF04967.12 gi|383319758|ref|YP_005380599.1| - 0.088 12.6 0.0 0.29 11.0 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain Ribosomal_S3_C PF00189.20 gi|383319759|ref|YP_005380600.1| - 2.8e-24 85.4 1.8 4.6e-24 84.7 1.0 1.8 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|383319759|ref|YP_005380600.1| - 5.4e-16 58.2 0.1 1.1e-15 57.2 0.1 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|383319759|ref|YP_005380600.1| - 0.01 15.6 1.1 0.037 13.9 0.3 2.2 2 0 0 2 2 2 0 KH domain Ribosomal_L6 PF00347.23 gi|383319759|ref|YP_005380600.1| - 0.027 15.1 0.0 0.072 13.8 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein L6 KH_4 PF13083.6 gi|383319759|ref|YP_005380600.1| - 0.063 13.2 0.3 0.14 12.0 0.3 1.5 1 0 0 1 1 1 0 KH domain Ribosomal_L29 PF00831.23 gi|383319760|ref|YP_005380601.1| - 6.7e-23 80.4 2.5 8.4e-23 80.1 2.5 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein MRP-L47 PF06984.13 gi|383319760|ref|YP_005380601.1| - 0.042 14.0 0.1 0.056 13.6 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) Fer4_14 PF13394.6 gi|383319760|ref|YP_005380601.1| - 0.094 12.9 0.0 0.094 12.8 0.0 1.1 1 0 0 1 1 1 0 4Fe-4S single cluster domain LEM PF03020.15 gi|383319760|ref|YP_005380601.1| - 0.2 11.2 2.0 0.28 10.8 0.6 1.9 1 1 1 2 2 2 0 LEM domain SUI1 PF01253.22 gi|383319761|ref|YP_005380602.1| - 2.5e-20 72.8 0.3 3e-20 72.5 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.15 gi|383319761|ref|YP_005380602.1| - 0.0061 16.3 1.0 0.0068 16.1 1.0 1.3 1 0 0 1 1 1 1 DTW domain UPF0086 PF01868.16 gi|383319762|ref|YP_005380603.1| - 4.4e-14 52.2 0.0 7.2e-14 51.5 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.20 gi|383319763|ref|YP_005380604.1| - 5.8e-31 106.4 3.8 7.2e-31 106.1 3.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|383319763|ref|YP_005380604.1| - 2.7e-05 24.5 0.3 9.2e-05 22.8 0.0 1.9 2 0 0 2 2 2 1 Ribosomal_S17 N-terminal DUF2535 PF10751.9 gi|383319763|ref|YP_005380604.1| - 0.031 14.8 0.0 0.082 13.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2535) Ribosomal_L14 PF00238.19 gi|383319764|ref|YP_005380605.1| - 1e-39 135.4 0.7 1.1e-39 135.2 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|383319765|ref|YP_005380606.1| - 1.4e-26 92.8 0.3 1.9e-26 92.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|383319765|ref|YP_005380606.1| - 6.7e-06 25.9 3.6 1.3e-05 25.0 3.6 1.5 1 0 0 1 1 1 1 KOW motif DUF4150 PF13665.6 gi|383319765|ref|YP_005380606.1| - 0.016 15.3 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4150) DUF2187 PF09953.9 gi|383319765|ref|YP_005380606.1| - 0.1 12.6 0.7 0.17 11.9 0.7 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2187) Ribosomal_S4e PF00900.20 gi|383319766|ref|YP_005380607.1| - 7.8e-22 77.0 0.3 3.6e-21 74.9 0.0 2.0 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.12 gi|383319766|ref|YP_005380607.1| - 1.5e-15 57.0 6.5 2.7e-15 56.2 6.5 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|383319766|ref|YP_005380607.1| - 1.3e-06 28.0 0.1 2.4e-06 27.1 0.1 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|383319766|ref|YP_005380607.1| - 0.0024 17.8 0.2 0.0098 15.8 0.2 2.2 1 1 0 1 1 1 1 KOW motif Ribosomal_L5_C PF00673.21 gi|383319767|ref|YP_005380608.1| - 3.2e-25 88.1 0.0 5.7e-25 87.3 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|383319767|ref|YP_005380608.1| - 3.4e-22 78.5 0.4 6.1e-22 77.7 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|383319768|ref|YP_005380609.1| - 9.7e-14 50.9 4.6 9.7e-14 50.9 4.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Prim_Zn_Ribbon PF08273.12 gi|383319768|ref|YP_005380609.1| - 0.0023 18.2 2.8 0.22 11.8 0.9 2.1 2 0 0 2 2 2 2 Zinc-binding domain of primase-helicase DZR PF12773.7 gi|383319768|ref|YP_005380609.1| - 0.013 15.5 0.1 0.018 15.1 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF1451 PF07295.11 gi|383319768|ref|YP_005380609.1| - 0.015 15.3 0.9 0.03 14.4 0.9 1.5 1 1 0 1 1 1 0 Zinc-ribbon containing domain zinc_ribbon_10 PF10058.9 gi|383319768|ref|YP_005380609.1| - 0.035 13.8 3.0 0.059 13.1 3.0 1.4 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein C1_2 PF03107.16 gi|383319768|ref|YP_005380609.1| - 0.04 14.2 0.3 0.044 14.1 0.3 1.1 1 0 0 1 1 1 0 C1 domain DUF448 PF04296.13 gi|383319768|ref|YP_005380609.1| - 0.13 12.2 1.8 0.97 9.3 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF448) A2L_zn_ribbon PF08792.10 gi|383319768|ref|YP_005380609.1| - 0.29 10.9 2.4 0.52 10.1 2.4 1.3 1 1 0 1 1 1 0 A2L zinc ribbon domain Rsm1 PF08600.10 gi|383319768|ref|YP_005380609.1| - 1.7 8.8 4.3 2.6 8.3 0.2 2.0 1 1 1 2 2 2 0 Rsm1-like zf-CCHC_2 PF13696.6 gi|383319768|ref|YP_005380609.1| - 3.6 7.5 9.0 9 6.2 2.0 2.2 2 0 0 2 2 2 0 Zinc knuckle Ribosomal_S8 PF00410.19 gi|383319769|ref|YP_005380610.1| - 1e-28 99.9 0.0 1.2e-28 99.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|383319770|ref|YP_005380611.1| - 3.8e-28 98.0 4.8 3.4e-16 59.7 0.3 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 BON PF04972.17 gi|383319770|ref|YP_005380611.1| - 0.033 14.5 2.0 6.7 7.1 0.1 3.5 3 0 0 3 3 3 0 BON domain DUF4115 PF13464.6 gi|383319770|ref|YP_005380611.1| - 0.25 11.6 2.0 1.2 9.3 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4115) Ribosomal_L32e PF01655.18 gi|383319771|ref|YP_005380612.1| - 1.1e-32 112.6 1.7 2e-32 111.8 1.7 1.4 1 0 0 1 1 1 1 Ribosomal protein L32 RNA_pol_Rpb5_C PF01191.19 gi|383319771|ref|YP_005380612.1| - 0.22 11.4 2.8 0.57 10.1 0.1 2.7 2 2 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain Ribosomal_L19e PF01280.20 gi|383319772|ref|YP_005380613.1| - 4.1e-59 198.8 10.4 4.6e-59 198.6 10.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L5e PF17144.4 gi|383319773|ref|YP_005380614.1| - 4.8e-31 108.0 3.3 1e-20 74.4 1.3 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|383319773|ref|YP_005380614.1| - 1.3e-06 28.7 1.2 1.8e-06 28.3 1.2 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S11 PF00411.19 gi|383319773|ref|YP_005380614.1| - 0.0067 16.8 0.2 0.0099 16.3 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_S5 PF00333.20 gi|383319774|ref|YP_005380615.1| - 2.1e-23 82.0 2.7 2.1e-23 82.0 2.7 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|383319774|ref|YP_005380615.1| - 3e-23 81.0 0.9 2.9e-22 77.9 0.1 2.2 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|383319775|ref|YP_005380616.1| - 1.8e-20 72.6 0.1 2.8e-20 71.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e DD_K PF12121.8 gi|383319775|ref|YP_005380616.1| - 0.035 14.2 0.4 0.065 13.4 0.4 1.4 1 0 0 1 1 1 0 Dermaseptin Ribosomal_L27A PF00828.19 gi|383319776|ref|YP_005380617.1| - 4.5e-21 75.8 0.1 5.8e-21 75.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DUF4351 PF14261.6 gi|383319776|ref|YP_005380617.1| - 0.055 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4351) SecY PF00344.20 gi|383319777|ref|YP_005380618.1| - 6.2e-69 232.6 24.6 8.1e-69 232.2 24.6 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|383319777|ref|YP_005380618.1| - 6.4e-10 38.7 0.2 1.8e-09 37.3 0.2 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p ADK PF00406.22 gi|383319778|ref|YP_005380619.1| - 2.7e-59 199.6 0.0 3.2e-59 199.4 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|383319778|ref|YP_005380619.1| - 1.8e-30 106.2 0.0 3.3e-30 105.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|383319778|ref|YP_005380619.1| - 1.2e-17 63.5 2.9 2e-17 62.9 2.9 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|383319778|ref|YP_005380619.1| - 4.4e-09 37.0 0.0 1.7e-08 35.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain Hydin_ADK PF17213.3 gi|383319778|ref|YP_005380619.1| - 0.00023 21.5 0.0 0.31 11.3 0.0 2.4 2 0 0 2 2 2 2 Hydin Adenylate kinase-like domain Thymidylate_kin PF02223.17 gi|383319778|ref|YP_005380619.1| - 0.00097 18.9 0.1 0.038 13.7 0.0 2.2 2 0 0 2 2 2 1 Thymidylate kinase AAA_33 PF13671.6 gi|383319778|ref|YP_005380619.1| - 0.0025 18.0 0.0 0.0047 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|383319778|ref|YP_005380619.1| - 0.0038 17.6 0.0 0.0071 16.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cytidylate_kin PF02224.18 gi|383319778|ref|YP_005380619.1| - 0.004 16.9 0.0 0.0072 16.1 0.0 1.5 1 0 0 1 1 1 1 Cytidylate kinase RuvB_N PF05496.12 gi|383319778|ref|YP_005380619.1| - 0.013 15.2 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|383319778|ref|YP_005380619.1| - 0.018 15.3 0.0 0.035 14.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain HypA PF01155.19 gi|383319778|ref|YP_005380619.1| - 0.065 13.3 0.1 0.095 12.7 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Toxin-deaminase PF14424.6 gi|383319778|ref|YP_005380619.1| - 0.11 12.6 0.2 17 5.5 0.0 2.3 1 1 1 2 2 2 0 The BURPS668_1122 family of deaminases AAA_22 PF13401.6 gi|383319778|ref|YP_005380619.1| - 0.12 12.7 0.1 0.29 11.4 0.0 1.8 2 1 0 2 2 2 0 AAA domain zf-RRN7 PF11781.8 gi|383319778|ref|YP_005380619.1| - 0.13 11.9 2.7 1.9 8.3 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 EMC3_TMCO1 PF01956.16 gi|383319779|ref|YP_005380620.1| - 3.4e-37 127.8 7.5 4.6e-37 127.4 7.5 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like DUF2207 PF09972.9 gi|383319779|ref|YP_005380620.1| - 0.0057 15.5 2.1 0.0057 15.5 2.1 2.0 1 1 1 2 2 2 1 Predicted membrane protein (DUF2207) Sm_multidrug_ex PF06695.11 gi|383319779|ref|YP_005380620.1| - 0.09 13.4 4.9 0.65 10.7 4.9 2.3 1 1 0 1 1 1 0 Putative small multi-drug export protein OSTbeta PF15048.6 gi|383319779|ref|YP_005380620.1| - 0.11 12.6 0.2 0.11 12.6 0.2 1.4 2 0 0 2 2 2 0 Organic solute transporter subunit beta protein DUF4446 PF14584.6 gi|383319779|ref|YP_005380620.1| - 0.18 11.7 1.4 0.28 11.1 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) Cytidylate_kin2 PF13189.6 gi|383319780|ref|YP_005380621.1| - 2.1e-21 76.9 0.3 1.5e-19 70.8 0.3 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|383319780|ref|YP_005380621.1| - 6.2e-14 52.7 0.0 7.7e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|383319780|ref|YP_005380621.1| - 2.4e-12 47.4 0.5 4.9e-12 46.4 0.5 1.6 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|383319780|ref|YP_005380621.1| - 2.6e-11 43.7 1.6 2e-05 24.4 0.2 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|383319780|ref|YP_005380621.1| - 2e-07 31.3 0.2 1.9e-05 24.8 0.2 2.3 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|383319780|ref|YP_005380621.1| - 1.2e-05 25.4 0.2 7.1e-05 22.9 0.2 2.0 1 1 0 1 1 1 1 Adenylate kinase AAA PF00004.29 gi|383319780|ref|YP_005380621.1| - 2.1e-05 24.9 0.0 3.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SKI PF01202.22 gi|383319780|ref|YP_005380621.1| - 6.6e-05 23.1 1.1 0.00074 19.7 1.1 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.6 gi|383319780|ref|YP_005380621.1| - 0.00013 22.3 0.1 0.00036 20.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain dNK PF01712.19 gi|383319780|ref|YP_005380621.1| - 0.002 18.0 0.0 0.98 9.2 0.0 2.2 1 1 1 2 2 2 2 Deoxynucleoside kinase AAA_16 PF13191.6 gi|383319780|ref|YP_005380621.1| - 0.0052 17.2 0.1 0.0065 16.9 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain CoaE PF01121.20 gi|383319780|ref|YP_005380621.1| - 0.0058 16.3 0.1 0.07 12.8 0.0 2.0 2 0 0 2 2 2 1 Dephospho-CoA kinase KTI12 PF08433.10 gi|383319780|ref|YP_005380621.1| - 0.028 13.9 0.0 0.032 13.7 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|383319780|ref|YP_005380621.1| - 0.04 13.2 0.1 0.059 12.7 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|383319780|ref|YP_005380621.1| - 0.089 13.1 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|383319780|ref|YP_005380621.1| - 0.1 12.3 0.1 0.13 12.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain CPT PF07931.12 gi|383319780|ref|YP_005380621.1| - 0.22 11.3 0.9 1 9.2 0.9 2.3 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein TruB_N PF01509.18 gi|383319781|ref|YP_005380622.1| - 1.8e-28 99.7 0.1 8.9e-17 61.8 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|383319781|ref|YP_005380622.1| - 8.3e-26 89.9 0.0 1.9e-25 88.7 0.0 1.7 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|383319781|ref|YP_005380622.1| - 1.4e-16 60.2 1.5 2.4e-16 59.4 0.3 1.9 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.12 gi|383319781|ref|YP_005380622.1| - 3.3e-14 52.7 0.0 1.1e-13 51.0 0.0 1.9 2 0 0 2 2 2 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|383319781|ref|YP_005380622.1| - 0.015 15.6 0.0 0.091 13.0 0.0 2.3 3 0 0 3 3 3 0 UPF0113 PUA domain PhoU_div PF01865.16 gi|383319782|ref|YP_005380623.1| - 3.5e-43 147.4 1.7 3.9e-43 147.3 1.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 Mago_nashi PF02792.14 gi|383319782|ref|YP_005380623.1| - 0.0049 17.0 0.2 0.0088 16.2 0.2 1.3 1 0 0 1 1 1 1 Mago nashi protein SRPRB PF09439.10 gi|383319782|ref|YP_005380623.1| - 0.064 12.7 0.8 0.1 12.0 0.8 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF370 PF04025.12 gi|383319782|ref|YP_005380623.1| - 0.097 12.8 0.3 0.19 11.9 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF370) Tmpp129 PF10272.9 gi|383319782|ref|YP_005380623.1| - 0.16 11.2 0.2 0.17 11.1 0.2 1.2 1 0 0 1 1 1 0 Putative transmembrane protein precursor Acylphosphatase PF00708.18 gi|383319782|ref|YP_005380623.1| - 0.18 12.3 0.4 1.6 9.2 0.0 2.5 2 1 0 2 2 2 0 Acylphosphatase Iso_dh PF00180.20 gi|383319784|ref|YP_005380625.1| - 1.3e-86 291.0 0.0 1.4e-86 290.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase AIRS PF00586.24 gi|383319785|ref|YP_005380626.1| - 1.3e-16 61.0 0.1 2.2e-16 60.3 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|383319785|ref|YP_005380626.1| - 1.4e-13 51.3 0.0 2.3e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain DUF5643 PF18705.1 gi|383319786|ref|YP_005380627.1| - 0.012 15.6 0.7 0.057 13.4 0.7 1.9 1 1 0 1 1 1 0 Family of unknown function (DUF5643) Aminotran_5 PF00266.19 gi|383319787|ref|YP_005380628.1| - 4.4e-43 147.7 0.0 5.8e-43 147.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|383319787|ref|YP_005380628.1| - 0.00047 19.4 0.0 0.0049 16.1 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_3 PF00202.21 gi|383319787|ref|YP_005380628.1| - 0.056 12.1 0.0 0.25 9.9 0.0 1.9 2 0 0 2 2 2 0 Aminotransferase class-III DMRL_synthase PF00885.19 gi|383319788|ref|YP_005380629.1| - 2.7e-14 53.2 0.1 3e-14 53.0 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|383319789|ref|YP_005380630.1| - 5.1e-31 107.4 0.2 5.9e-31 107.2 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Metallophos_3 PF14582.6 gi|383319789|ref|YP_005380630.1| - 0.00097 18.5 1.7 0.37 10.1 0.1 2.9 1 1 2 3 3 3 2 Metallophosphoesterase, calcineurin superfamily Sigma70_ECF PF07638.11 gi|383319789|ref|YP_005380630.1| - 0.073 12.9 0.1 0.089 12.7 0.1 1.1 1 0 0 1 1 1 0 ECF sigma factor Aminotran_1_2 PF00155.21 gi|383319790|ref|YP_005380631.1| - 1.5e-60 205.3 0.0 1.7e-60 205.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|383319790|ref|YP_005380631.1| - 2.2e-05 23.2 0.0 3.6e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|383319790|ref|YP_005380631.1| - 0.00012 21.2 0.0 0.00032 19.8 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|383319790|ref|YP_005380631.1| - 0.016 14.5 0.0 0.025 13.9 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Radical_SAM PF04055.21 gi|383319790|ref|YP_005380631.1| - 0.05 14.0 0.0 2.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Radical SAM superfamily DegT_DnrJ_EryC1 PF01041.17 gi|383319790|ref|YP_005380631.1| - 0.2 10.9 0.0 0.29 10.4 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Mut7-C PF01927.16 gi|383319791|ref|YP_005380632.1| - 7.9e-40 136.3 0.1 1.4e-39 135.5 0.0 1.4 2 0 0 2 2 2 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|383319791|ref|YP_005380632.1| - 4.1e-07 29.6 0.1 7.7e-07 28.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) HHH PF00633.23 gi|383319791|ref|YP_005380632.1| - 2.3e-06 27.2 0.1 1e-05 25.1 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HhH-GPD PF00730.25 gi|383319791|ref|YP_005380632.1| - 5e-05 23.7 0.0 0.00066 20.1 0.0 2.3 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.6 gi|383319791|ref|YP_005380632.1| - 0.034 14.8 0.0 0.11 13.1 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain Rpr2 PF04032.16 gi|383319791|ref|YP_005380632.1| - 0.039 14.2 0.3 1.5 9.1 0.3 2.5 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain EndIII_4Fe-2S PF10576.9 gi|383319791|ref|YP_005380632.1| - 0.043 14.2 0.3 0.043 14.2 0.3 2.0 2 0 0 2 2 1 0 Iron-sulfur binding domain of endonuclease III zf-BED PF02892.15 gi|383319791|ref|YP_005380632.1| - 0.056 13.5 0.1 2.5 8.2 0.1 2.3 2 0 0 2 2 2 0 BED zinc finger PIN_10 PF18478.1 gi|383319791|ref|YP_005380632.1| - 0.058 13.6 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 PIN like domain HHH_2 PF12826.7 gi|383319791|ref|YP_005380632.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF2400 PF09674.10 gi|383319791|ref|YP_005380632.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) SOR_SNZ PF01680.17 gi|383319792|ref|YP_005380633.1| - 6e-105 349.5 7.4 7.8e-105 349.2 7.4 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|383319792|ref|YP_005380633.1| - 1e-09 38.1 4.9 2.9e-08 33.4 0.2 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|383319792|ref|YP_005380633.1| - 0.0001 21.5 0.3 0.12 11.4 0.0 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|383319792|ref|YP_005380633.1| - 0.00014 21.1 1.2 0.0058 15.8 0.1 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|383319792|ref|YP_005380633.1| - 0.0032 16.9 4.8 0.0061 16.0 0.2 2.3 2 0 0 2 2 2 1 Nitronate monooxygenase DUF561 PF04481.12 gi|383319792|ref|YP_005380633.1| - 0.0076 15.4 0.6 0.17 11.1 0.0 2.4 1 1 2 3 3 3 1 Protein of unknown function (DUF561) PcrB PF01884.17 gi|383319792|ref|YP_005380633.1| - 0.013 15.0 0.4 0.027 13.9 0.0 1.9 2 1 0 2 2 2 0 PcrB family IGPS PF00218.21 gi|383319792|ref|YP_005380633.1| - 0.013 14.7 0.1 0.042 13.0 0.0 1.9 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase OMPdecase PF00215.24 gi|383319792|ref|YP_005380633.1| - 0.029 14.0 0.1 0.83 9.2 0.0 2.3 1 1 1 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family TetR_C_27 PF17935.1 gi|383319792|ref|YP_005380633.1| - 0.054 13.6 0.0 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain ThiI PF02568.14 gi|383319792|ref|YP_005380633.1| - 0.12 11.9 0.0 0.67 9.5 0.0 2.1 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) NucS PF01939.16 gi|383319794|ref|YP_005380635.1| - 8.9e-62 208.4 0.3 1e-61 208.2 0.3 1.0 1 0 0 1 1 1 1 Endonuclease NucS IGPS PF00218.21 gi|383319794|ref|YP_005380635.1| - 0.0013 18.0 0.0 0.036 13.2 0.0 2.1 1 1 1 2 2 2 1 Indole-3-glycerol phosphate synthase PDDEXK_9 PF08011.11 gi|383319794|ref|YP_005380635.1| - 0.003 17.4 0.1 0.014 15.3 0.0 2.0 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|383319794|ref|YP_005380635.1| - 0.0048 17.0 0.1 0.012 15.7 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF83 UPF0102 PF02021.17 gi|383319794|ref|YP_005380635.1| - 0.014 15.6 0.1 0.037 14.3 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 PDDEXK_4 PF14281.6 gi|383319794|ref|YP_005380635.1| - 0.016 15.4 0.1 0.022 14.9 0.1 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily YhcG_C PF06250.11 gi|383319794|ref|YP_005380635.1| - 0.032 14.0 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain DUF5412 PF17428.2 gi|383319794|ref|YP_005380635.1| - 0.16 11.9 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5412) DS PF01916.17 gi|383319796|ref|YP_005380637.1| - 4.4e-102 341.2 0.1 5e-102 341.0 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Ribosomal_S6e PF01092.19 gi|383319797|ref|YP_005380638.1| - 4.6e-43 146.2 0.0 5.8e-43 145.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e L27_N PF09060.10 gi|383319798|ref|YP_005380639.1| - 0.0025 17.8 0.5 0.0046 17.0 0.1 1.6 2 0 0 2 2 2 1 L27_N DUF3311 PF11755.8 gi|383319799|ref|YP_005380640.1| - 0.59 10.1 4.0 1 9.4 4.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3311) DUF3311 PF11755.8 gi|383319800|ref|YP_005380641.1| - 0.56 10.2 4.0 0.97 9.4 4.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3311) Ery_res_leader2 PF08057.11 gi|383319803|ref|YP_005380644.1| - 0.056 13.8 0.1 58 4.7 0.0 3.9 4 0 0 4 4 4 0 Erythromycin resistance leader peptide DUF2269 PF10027.9 gi|383319806|ref|YP_005380647.1| - 0.029 14.4 7.0 0.033 14.2 7.0 1.0 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) TBP-binding PF09247.11 gi|383319807|ref|YP_005380648.1| - 0.15 12.3 0.5 2.6 8.4 0.1 2.0 1 1 1 2 2 2 0 TATA box-binding protein binding Cortexin PF11057.8 gi|383319809|ref|YP_005380650.1| - 0.043 13.7 0.6 0.054 13.3 0.6 1.3 1 0 0 1 1 1 0 Cortexin of kidney Trep_dent_lipo PF09710.10 gi|383319809|ref|YP_005380650.1| - 0.21 10.5 0.1 0.2 10.5 0.1 1.0 1 0 0 1 1 1 0 Treponema clustered lipoprotein (Trep_dent_lipo) FeoB_associated PF12669.7 gi|383319809|ref|YP_005380650.1| - 0.38 11.2 3.1 0.52 10.8 3.1 1.1 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein Aminotran_1_2 PF00155.21 gi|383319810|ref|YP_005380651.1| - 3.7e-66 223.7 0.0 4.6e-66 223.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|383319810|ref|YP_005380651.1| - 8.9e-15 54.9 0.1 2.1e-14 53.6 0.1 1.6 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|383319810|ref|YP_005380651.1| - 1.3e-12 47.3 0.0 2.3e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|383319810|ref|YP_005380651.1| - 9.5e-08 31.0 0.0 1.5e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|383319810|ref|YP_005380651.1| - 2.4e-07 30.3 0.0 3.4e-07 29.8 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|383319810|ref|YP_005380651.1| - 0.0072 15.1 0.0 0.014 14.1 0.0 1.6 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, major domain Aminotran_3 PF00202.21 gi|383319810|ref|YP_005380651.1| - 0.079 11.6 0.0 1.2 7.7 0.0 2.0 2 0 0 2 2 2 0 Aminotransferase class-III AP_endonuc_2 PF01261.24 gi|383319810|ref|YP_005380651.1| - 0.084 12.3 0.0 0.2 11.0 0.0 1.8 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF362 PF04015.12 gi|383319811|ref|YP_005380652.1| - 2.2e-48 165.2 0.1 2.8e-48 164.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|383319811|ref|YP_005380652.1| - 9.9e-08 31.5 21.7 0.00036 20.2 5.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383319811|ref|YP_005380652.1| - 3.4e-06 27.5 16.9 8.2e-06 26.3 16.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383319811|ref|YP_005380652.1| - 0.00053 20.1 14.9 0.0011 19.1 14.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383319811|ref|YP_005380652.1| - 0.0018 18.2 23.1 0.16 12.1 5.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|383319811|ref|YP_005380652.1| - 0.0074 16.3 22.7 0.19 11.9 5.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|383319811|ref|YP_005380652.1| - 0.0078 16.4 17.0 0.068 13.4 17.2 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383319811|ref|YP_005380652.1| - 0.0083 16.2 21.0 0.13 12.4 6.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Lar_N PF09861.9 gi|383319811|ref|YP_005380652.1| - 0.026 13.7 0.1 0.57 9.3 0.0 2.4 3 0 0 3 3 3 0 Lactate racemase N-terminal domain Fer4_17 PF13534.6 gi|383319811|ref|YP_005380652.1| - 0.07 13.7 12.6 1.5 9.5 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383319811|ref|YP_005380652.1| - 0.077 13.7 9.4 1.2 9.9 1.0 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|383319811|ref|YP_005380652.1| - 0.088 13.8 16.6 0.073 14.0 5.2 2.6 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|383319811|ref|YP_005380652.1| - 1.1 9.7 19.7 4.9 7.7 4.3 2.5 1 1 3 4 4 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383319811|ref|YP_005380652.1| - 2.5 8.8 17.3 5 7.9 3.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|383319811|ref|YP_005380652.1| - 6 8.0 21.7 8 7.7 7.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Flavodoxin_5 PF12724.7 gi|383319812|ref|YP_005380653.1| - 6.1e-10 39.5 0.0 2.3e-09 37.6 0.0 1.6 1 1 1 2 2 2 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|383319812|ref|YP_005380653.1| - 5.3e-05 23.0 0.0 7.6e-05 22.4 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|383319812|ref|YP_005380653.1| - 0.022 15.0 0.0 0.036 14.3 0.0 1.4 1 1 0 1 1 1 0 Flavodoxin TxDE PF18711.1 gi|383319812|ref|YP_005380653.1| - 0.099 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Toxoflavin-degrading enzyme DHQS PF01959.16 gi|383319813|ref|YP_005380654.1| - 5.6e-143 476.1 1.3 6.3e-143 475.9 1.3 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II Sugar-bind PF04198.13 gi|383319813|ref|YP_005380654.1| - 0.0012 18.1 0.0 0.0021 17.3 0.0 1.3 1 0 0 1 1 1 1 Putative sugar-binding domain FlpD PF02662.16 gi|383319813|ref|YP_005380654.1| - 0.005 16.8 0.2 0.95 9.5 0.0 2.6 2 0 0 2 2 2 2 Methyl-viologen-reducing hydrogenase, delta subunit OapA PF04225.12 gi|383319813|ref|YP_005380654.1| - 0.026 14.6 0.1 0.34 11.0 0.0 2.7 3 0 0 3 3 3 0 Opacity-associated protein A LysM-like domain Rep_fac-A_3 PF08661.11 gi|383319813|ref|YP_005380654.1| - 0.062 13.7 0.0 0.14 12.6 0.0 1.5 1 0 0 1 1 1 0 Replication factor A protein 3 ThiG PF05690.14 gi|383319813|ref|YP_005380654.1| - 0.18 11.1 2.4 0.72 9.1 0.3 2.3 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DeoC PF01791.9 gi|383319814|ref|YP_005380655.1| - 1.9e-63 214.3 0.0 2.2e-63 214.0 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase NMO PF03060.15 gi|383319814|ref|YP_005380655.1| - 4.9 6.4 6.8 1.3 8.3 2.8 1.9 1 1 1 2 2 2 0 Nitronate monooxygenase PGK PF00162.19 gi|383319815|ref|YP_005380656.1| - 1e-107 360.4 0.6 1.2e-107 360.2 0.6 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Methyltr_RsmB-F PF01189.17 gi|383319815|ref|YP_005380656.1| - 0.039 13.6 0.1 0.22 11.2 0.0 2.1 3 0 0 3 3 3 0 16S rRNA methyltransferase RsmB/F TrmB PF01978.19 gi|383319817|ref|YP_005380658.1| - 5e-19 68.0 0.3 1.2e-18 66.8 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|383319817|ref|YP_005380658.1| - 0.014 14.6 0.1 0.023 13.9 0.1 1.4 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.10 gi|383319817|ref|YP_005380658.1| - 0.075 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain ABC_export PF16962.5 gi|383319817|ref|YP_005380658.1| - 0.16 10.4 0.1 0.23 9.8 0.1 1.2 1 0 0 1 1 1 0 Putative ABC exporter NAD_synthase PF02540.17 gi|383319818|ref|YP_005380659.1| - 7.9e-58 195.4 0.0 7.4e-31 107.1 0.0 2.0 1 1 0 2 2 2 2 NAD synthase QueC PF06508.13 gi|383319818|ref|YP_005380659.1| - 0.00014 21.4 0.0 0.00039 20.0 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|383319818|ref|YP_005380659.1| - 0.0055 15.5 0.0 0.022 13.5 0.0 1.8 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|383319818|ref|YP_005380659.1| - 0.036 13.7 0.2 0.063 12.9 0.2 1.5 1 1 0 1 1 1 0 Asparagine synthase Fasciclin PF02469.22 gi|383319819|ref|YP_005380660.1| - 3.6e-34 117.8 0.0 4.3e-34 117.5 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain Myco_arth_vir_N PF09610.10 gi|383319819|ref|YP_005380660.1| - 1.2 9.3 4.5 1.2 9.2 2.5 2.1 2 0 0 2 2 2 0 Mycoplasma virulence signal region (Myco_arth_vir_N) HMGL-like PF00682.19 gi|383319820|ref|YP_005380661.1| - 5.5e-37 127.7 0.0 7.4e-37 127.3 0.0 1.2 1 0 0 1 1 1 1 HMGL-like ATP-grasp_5 PF13549.6 gi|383319821|ref|YP_005380662.1| - 1.1e-65 221.2 0.1 1.2e-65 221.1 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|383319821|ref|YP_005380662.1| - 2e-05 24.2 0.1 3.8e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|383319821|ref|YP_005380662.1| - 0.0019 17.7 0.0 0.0033 16.9 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Succ_CoA_lig PF13607.6 gi|383319822|ref|YP_005380663.1| - 8.1e-55 184.4 3.1 2.6e-53 179.6 0.4 3.0 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|383319822|ref|YP_005380663.1| - 2.5e-25 89.2 0.3 1.6e-24 86.7 0.0 2.4 2 1 1 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|383319822|ref|YP_005380663.1| - 8.9e-11 42.3 0.5 2.9e-10 40.7 0.0 2.1 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|383319822|ref|YP_005380663.1| - 0.018 14.9 0.1 0.054 13.3 0.0 1.8 2 0 0 2 2 2 0 CoA-ligase Dak1_2 PF13684.6 gi|383319822|ref|YP_005380663.1| - 0.025 13.7 0.0 0.18 10.9 0.0 2.1 2 0 0 2 2 2 0 Dihydroxyacetone kinase family Peripla_BP_3 PF13377.6 gi|383319822|ref|YP_005380663.1| - 0.071 13.4 0.2 2.5 8.4 0.1 2.5 2 0 0 2 2 2 0 Periplasmic binding protein-like domain ABC_tran PF00005.27 gi|383319823|ref|YP_005380664.1| - 5.3e-24 85.3 0.0 6.8e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383319823|ref|YP_005380664.1| - 9e-11 42.1 0.0 5.3e-06 26.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383319823|ref|YP_005380664.1| - 2e-05 24.2 0.1 0.0025 17.3 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|383319823|ref|YP_005380664.1| - 0.00014 21.6 0.0 0.00025 20.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|383319823|ref|YP_005380664.1| - 0.009 15.8 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|383319823|ref|YP_005380664.1| - 0.027 13.9 0.0 0.037 13.5 0.0 1.1 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Dynamin_N PF00350.23 gi|383319823|ref|YP_005380664.1| - 0.043 13.9 0.2 0.064 13.3 0.2 1.2 1 0 0 1 1 1 0 Dynamin family AAA_23 PF13476.6 gi|383319823|ref|YP_005380664.1| - 0.06 13.8 0.0 0.093 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|383319823|ref|YP_005380664.1| - 0.1 13.1 0.1 3.3 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|383319823|ref|YP_005380664.1| - 0.11 11.2 0.0 0.44 9.3 0.0 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class zf-RING-like PF08746.11 gi|383319823|ref|YP_005380664.1| - 0.23 11.8 2.4 0.63 10.4 0.3 2.2 1 1 1 2 2 2 0 RING-like domain DUF1284 PF06935.11 gi|383319824|ref|YP_005380665.1| - 3.1e-26 91.8 0.2 4.3e-26 91.3 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) Macin PF14865.6 gi|383319824|ref|YP_005380665.1| - 0.022 15.3 0.1 0.045 14.3 0.1 1.5 1 0 0 1 1 1 0 Macin ImmE5 PF11480.8 gi|383319824|ref|YP_005380665.1| - 0.039 14.4 0.0 0.08 13.4 0.0 1.5 1 0 0 1 1 1 0 Colicin-E5 Imm protein ATP-synt_D PF01813.17 gi|383319825|ref|YP_005380666.1| - 1.1e-50 172.2 12.6 1.3e-50 172.0 12.6 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF3368 PF11848.8 gi|383319825|ref|YP_005380666.1| - 0.3 10.9 2.1 46 3.9 0.1 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF3368) ATP-synt_ab PF00006.25 gi|383319826|ref|YP_005380667.1| - 3.4e-67 226.2 0.0 4.4e-67 225.8 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|383319826|ref|YP_005380667.1| - 8.9e-14 51.8 0.4 2.1e-13 50.6 0.4 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|383319826|ref|YP_005380667.1| - 0.0019 18.3 0.5 0.0054 16.8 0.5 1.8 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.25 gi|383319827|ref|YP_005380668.1| - 2.5e-95 318.2 0.0 4.8e-95 317.2 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|383319827|ref|YP_005380668.1| - 3.6e-41 139.8 0.1 6.5e-41 139.0 0.1 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|383319827|ref|YP_005380668.1| - 1.3e-13 51.3 1.3 1.3e-13 51.3 1.3 2.0 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|383319827|ref|YP_005380668.1| - 0.022 15.0 0.0 0.048 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.22 gi|383319827|ref|YP_005380668.1| - 0.048 13.9 0.3 3.1 8.1 0.1 2.8 2 0 0 2 2 2 0 Peptidase family M23 DUF1932 PF09130.11 gi|383319827|ref|YP_005380668.1| - 0.49 10.4 1.9 2.2 8.3 0.5 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF1932) ATP-synt_F PF01990.17 gi|383319828|ref|YP_005380669.1| - 2.6e-16 59.7 0.2 2.9e-16 59.5 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|383319829|ref|YP_005380670.1| - 1.6e-81 274.5 0.5 1.7e-81 274.3 0.5 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit MerR-DNA-bind PF09278.11 gi|383319829|ref|YP_005380670.1| - 0.01 16.4 0.0 2 9.0 0.0 2.6 2 0 0 2 2 2 2 MerR, DNA binding vATP-synt_E PF01991.18 gi|383319830|ref|YP_005380671.1| - 1.2e-23 83.5 18.4 7.3e-22 77.8 18.4 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|383319830|ref|YP_005380671.1| - 0.0035 17.7 13.3 0.0059 17.0 13.3 1.3 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit Mfa_like_2 PF15415.6 gi|383319830|ref|YP_005380671.1| - 0.021 13.7 0.0 0.027 13.4 0.0 1.1 1 0 0 1 1 1 0 Fimbrillin-like BAR_3 PF16746.5 gi|383319830|ref|YP_005380671.1| - 0.033 13.9 4.1 0.042 13.5 4.1 1.1 1 0 0 1 1 1 0 BAR domain of APPL family DUF2968 PF11180.8 gi|383319830|ref|YP_005380671.1| - 0.093 12.4 6.2 0.054 13.1 3.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2968) T4_Rnl2_C PF18043.1 gi|383319830|ref|YP_005380671.1| - 0.1 12.7 3.2 0.076 13.2 1.2 1.8 1 1 1 2 2 2 0 T4 RNA ligase 2 C-terminal DUF1104 PF06518.11 gi|383319830|ref|YP_005380671.1| - 0.34 11.3 8.8 0.85 10.0 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1104) CRF PF00473.17 gi|383319830|ref|YP_005380671.1| - 0.65 10.1 0.0 0.65 10.1 0.0 2.5 3 0 0 3 3 3 0 Corticotropin-releasing factor family V-ATPase_G PF03179.15 gi|383319830|ref|YP_005380671.1| - 1.2 9.7 13.7 2.1 8.9 13.7 1.4 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit ERp29 PF07749.12 gi|383319830|ref|YP_005380671.1| - 1.4 9.9 8.5 1.6 9.7 6.5 2.1 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain ATP-synt_B PF00430.18 gi|383319830|ref|YP_005380671.1| - 3.9 7.6 18.0 11 6.1 18.0 1.7 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) DivIVA PF05103.13 gi|383319830|ref|YP_005380671.1| - 4 7.5 12.0 8.9 6.4 12.0 1.7 1 1 0 1 1 1 0 DivIVA protein ATP-synt_C PF00137.21 gi|383319831|ref|YP_005380672.1| - 3.6e-16 59.2 12.2 4.3e-16 59.0 12.2 1.1 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.19 gi|383319832|ref|YP_005380673.1| - 1.2e-26 93.0 5.3 3.5e-15 55.0 0.2 2.9 3 1 0 3 3 3 2 V-type ATPase 116kDa subunit family Nup54 PF13874.6 gi|383319832|ref|YP_005380673.1| - 0.24 11.5 2.8 4.5 7.4 0.1 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 COG5 PF10392.9 gi|383319832|ref|YP_005380673.1| - 0.45 10.7 2.4 0.45 10.7 0.1 2.0 2 1 0 2 2 2 0 Golgi transport complex subunit 5 Spc24 PF08286.11 gi|383319832|ref|YP_005380673.1| - 0.45 10.8 1.7 31 4.9 0.1 2.4 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Syntaxin-6_N PF09177.11 gi|383319832|ref|YP_005380673.1| - 0.71 10.5 3.5 6 7.5 0.1 2.3 2 0 0 2 2 2 0 Syntaxin 6, N-terminal APG6_N PF17675.1 gi|383319832|ref|YP_005380673.1| - 1.5 9.4 9.9 8.4 6.9 3.6 2.4 2 0 0 2 2 2 0 Apg6 coiled-coil region Spc7 PF08317.11 gi|383319832|ref|YP_005380673.1| - 2.8 6.7 7.2 4.1 6.2 2.8 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF4164 PF13747.6 gi|383319832|ref|YP_005380673.1| - 3.3 8.0 6.9 14 6.1 2.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Prefoldin_2 PF01920.20 gi|383319832|ref|YP_005380673.1| - 4.1 7.4 10.3 10 6.2 1.2 2.5 2 0 0 2 2 2 0 Prefoldin subunit DUF4140 PF13600.6 gi|383319832|ref|YP_005380673.1| - 4.3 7.8 6.6 12 6.4 0.4 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) ATP-synt_B PF00430.18 gi|383319833|ref|YP_005380674.1| - 0.0013 18.8 29.0 0.0054 16.8 28.8 1.8 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) HrpE PF06188.12 gi|383319833|ref|YP_005380674.1| - 0.0057 16.5 10.3 0.0067 16.3 10.3 1.1 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E V-ATPase_G_2 PF16999.5 gi|383319833|ref|YP_005380674.1| - 0.0069 16.8 26.0 0.0088 16.5 26.0 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit Adenine_glyco PF03352.13 gi|383319833|ref|YP_005380674.1| - 0.041 13.6 0.8 0.049 13.4 0.8 1.2 1 0 0 1 1 1 0 Methyladenine glycosylase MAT1 PF06391.13 gi|383319833|ref|YP_005380674.1| - 0.12 12.2 8.8 0.14 12.0 8.8 1.2 1 0 0 1 1 1 0 CDK-activating kinase assembly factor MAT1 DivIVA PF05103.13 gi|383319833|ref|YP_005380674.1| - 0.77 9.9 20.6 1.1 9.4 17.8 2.0 1 1 1 2 2 2 0 DivIVA protein DUF1847 PF08901.11 gi|383319833|ref|YP_005380674.1| - 0.78 9.4 4.9 0.32 10.6 2.6 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1847) Ribosomal_L22 PF00237.19 gi|383319833|ref|YP_005380674.1| - 0.8 10.0 6.9 0.99 9.7 6.9 1.3 1 0 0 1 1 1 0 Ribosomal protein L22p/L17e RPOL_N PF14700.6 gi|383319833|ref|YP_005380674.1| - 0.81 9.0 8.7 0.9 8.9 8.7 1.0 1 0 0 1 1 1 0 DNA-directed RNA polymerase N-terminal ClpS PF02617.17 gi|383319833|ref|YP_005380674.1| - 1 9.2 3.7 1.6 8.6 3.6 1.5 1 1 0 1 1 1 0 ATP-dependent Clp protease adaptor protein ClpS U79_P34 PF03064.16 gi|383319833|ref|YP_005380674.1| - 1.2 8.5 6.8 1.5 8.1 6.8 1.1 1 0 0 1 1 1 0 HSV U79 / HCMV P34 DUF3552 PF12072.8 gi|383319833|ref|YP_005380674.1| - 1.3 8.3 26.3 2.7 7.4 25.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) HSP70 PF00012.20 gi|383319833|ref|YP_005380674.1| - 4 5.5 12.3 4.6 5.3 12.3 1.0 1 0 0 1 1 1 0 Hsp70 protein Sec62 PF03839.16 gi|383319833|ref|YP_005380674.1| - 4.2 6.8 6.3 4.9 6.6 6.3 1.1 1 0 0 1 1 1 0 Translocation protein Sec62 V-ATPase_G PF03179.15 gi|383319833|ref|YP_005380674.1| - 6.8 7.3 27.0 6.7 7.3 20.9 2.7 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit Gln-synt_C PF00120.24 gi|383319834|ref|YP_005380675.1| - 2e-133 444.6 0.0 2.4e-133 444.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|383319834|ref|YP_005380675.1| - 1.6e-30 104.7 0.0 2.9e-30 103.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain SRP54 PF00448.22 gi|383319835|ref|YP_005380676.1| - 8.5e-69 231.1 0.3 1.4e-68 230.4 0.3 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|383319835|ref|YP_005380676.1| - 1.6e-28 99.2 1.7 1.6e-28 99.2 1.7 2.1 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|383319835|ref|YP_005380676.1| - 1.1e-18 67.2 1.0 1.2e-17 63.9 0.1 2.6 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|383319835|ref|YP_005380676.1| - 9.8e-07 28.9 0.0 5.8e-06 26.4 0.0 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|383319835|ref|YP_005380676.1| - 0.00015 21.1 0.0 0.00031 20.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin 6PF2K PF01591.18 gi|383319835|ref|YP_005380676.1| - 0.00038 19.8 0.0 0.0007 19.0 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase cobW PF02492.19 gi|383319835|ref|YP_005380676.1| - 0.00063 19.4 0.3 0.0045 16.6 0.3 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|383319835|ref|YP_005380676.1| - 0.0013 17.8 0.2 0.0094 15.0 0.1 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|383319835|ref|YP_005380676.1| - 0.0037 17.5 0.0 0.0095 16.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|383319835|ref|YP_005380676.1| - 0.0045 17.1 0.0 0.01 16.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|383319835|ref|YP_005380676.1| - 0.0053 16.7 0.0 0.0098 15.8 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.6 gi|383319835|ref|YP_005380676.1| - 0.013 15.9 0.0 0.025 15.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain MobB PF03205.14 gi|383319835|ref|YP_005380676.1| - 0.014 15.3 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Thymidylate_kin PF02223.17 gi|383319835|ref|YP_005380676.1| - 0.014 15.0 0.1 0.075 12.7 0.1 2.1 2 0 0 2 2 2 0 Thymidylate kinase TrwB_AAD_bind PF10412.9 gi|383319835|ref|YP_005380676.1| - 0.015 14.2 0.0 0.027 13.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ATP_bind_1 PF03029.17 gi|383319835|ref|YP_005380676.1| - 0.02 14.6 0.0 0.21 11.3 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.6 gi|383319835|ref|YP_005380676.1| - 0.022 15.1 0.1 0.042 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|383319835|ref|YP_005380676.1| - 0.035 14.7 0.0 0.083 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|383319835|ref|YP_005380676.1| - 0.048 13.4 0.1 0.17 11.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain LpxK PF02606.14 gi|383319835|ref|YP_005380676.1| - 0.073 12.1 0.1 0.13 11.3 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_31 PF13614.6 gi|383319835|ref|YP_005380676.1| - 0.092 12.7 0.0 0.3 11.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|383319835|ref|YP_005380676.1| - 0.093 12.2 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PRK PF00485.18 gi|383319835|ref|YP_005380676.1| - 0.12 12.1 0.1 0.35 10.6 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.6 gi|383319835|ref|YP_005380676.1| - 0.15 12.3 0.3 0.42 10.9 0.2 1.9 1 1 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|383319835|ref|YP_005380676.1| - 0.15 11.5 0.3 4.2 6.8 0.1 2.3 1 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Methyltrn_RNA_2 PF04013.12 gi|383319836|ref|YP_005380677.1| - 7.6e-62 208.5 0.0 8.6e-62 208.4 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase UPF0047 PF01894.17 gi|383319837|ref|YP_005380678.1| - 3.5e-35 120.6 0.0 4e-35 120.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Metallophos_2 PF12850.7 gi|383319838|ref|YP_005380679.1| - 6.7e-18 65.4 0.0 1.2e-17 64.6 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|383319838|ref|YP_005380679.1| - 5.9e-13 49.8 0.0 9.8e-13 49.1 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|383319838|ref|YP_005380679.1| - 1.1e-07 31.4 0.0 2.1e-06 27.2 0.0 2.4 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily DAP_epimerase PF01678.19 gi|383319839|ref|YP_005380680.1| - 4.1e-56 188.4 0.6 7.8e-34 116.5 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.11 gi|383319839|ref|YP_005380680.1| - 0.009 15.1 0.3 0.43 9.6 0.0 2.1 2 0 0 2 2 2 2 Proline racemase Orn_Arg_deC_N PF02784.16 gi|383319840|ref|YP_005380681.1| - 1.1e-54 185.4 0.0 1.4e-54 185.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|383319840|ref|YP_005380681.1| - 1.1e-26 92.9 0.0 6.7e-26 90.4 0.0 1.9 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|383319840|ref|YP_005380681.1| - 1.1e-10 41.6 0.0 2.5e-10 40.4 0.0 1.6 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain S6PP PF05116.13 gi|383319840|ref|YP_005380681.1| - 0.017 14.6 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase Aminotran_1_2 PF00155.21 gi|383319841|ref|YP_005380682.1| - 1.4e-56 192.3 0.0 1.5e-56 192.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II RraA-like PF03737.15 gi|383319842|ref|YP_005380683.1| - 2.5e-41 141.4 0.4 2.5e-41 141.4 0.4 2.3 2 0 0 2 2 2 1 Aldolase/RraA OMPdecase PF00215.24 gi|383319842|ref|YP_005380683.1| - 8e-20 71.4 4.3 1.5e-19 70.5 4.3 1.5 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|383319842|ref|YP_005380683.1| - 2e-06 27.2 2.9 4.9e-06 25.9 1.4 2.2 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|383319842|ref|YP_005380683.1| - 0.0019 17.7 1.0 0.0019 17.7 1.0 2.1 3 0 0 3 3 3 1 Histidine biosynthesis protein ThiG PF05690.14 gi|383319842|ref|YP_005380683.1| - 0.0058 16.0 2.8 0.0058 16.0 2.8 1.8 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG HMGL-like PF00682.19 gi|383319842|ref|YP_005380683.1| - 0.01 15.4 2.7 0.048 13.2 0.2 2.2 1 1 1 2 2 2 1 HMGL-like PEP_mutase PF13714.6 gi|383319842|ref|YP_005380683.1| - 0.012 15.1 0.9 0.012 15.1 0.9 2.5 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase DeoC PF01791.9 gi|383319842|ref|YP_005380683.1| - 0.04 13.5 2.1 0.14 11.7 0.3 2.4 1 1 1 2 2 2 0 DeoC/LacD family aldolase FMN_dh PF01070.18 gi|383319842|ref|YP_005380683.1| - 0.051 12.6 9.9 0.022 13.8 7.0 1.8 2 0 0 2 2 2 0 FMN-dependent dehydrogenase SMC_hinge PF06470.13 gi|383319842|ref|YP_005380683.1| - 0.09 13.1 1.8 3.2 8.1 1.8 2.6 1 1 0 1 1 1 0 SMC proteins Flexible Hinge Domain Dus PF01207.17 gi|383319842|ref|YP_005380683.1| - 0.7 8.9 4.9 0.34 10.0 0.3 2.5 2 1 0 3 3 3 0 Dihydrouridine synthase (Dus) DUF1616 PF07760.11 gi|383319843|ref|YP_005380684.1| - 2.6e-108 361.9 0.0 2.9e-108 361.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Sigma_reg_N PF13800.6 gi|383319843|ref|YP_005380684.1| - 5.6 7.3 8.6 6.9 7.0 0.9 3.2 2 2 2 4 4 4 0 Sigma factor regulator N-terminal DUF58 PF01882.18 gi|383319845|ref|YP_005380686.1| - 4.2e-15 55.8 0.0 8e-15 54.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|383319846|ref|YP_005380687.1| - 2.3e-61 205.4 0.1 3.9e-61 204.7 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|383319846|ref|YP_005380687.1| - 5.8e-21 74.1 0.0 1.2e-20 73.1 0.0 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|383319846|ref|YP_005380687.1| - 3.1e-15 56.4 0.0 6.8e-15 55.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|383319846|ref|YP_005380687.1| - 2.5e-09 37.7 0.0 5.5e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|383319846|ref|YP_005380687.1| - 4.4e-08 32.5 0.0 8.2e-08 31.6 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|383319846|ref|YP_005380687.1| - 2e-06 27.6 0.1 4.7e-05 23.2 0.1 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|383319846|ref|YP_005380687.1| - 9.3e-06 25.4 0.0 2.8e-05 23.9 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|383319846|ref|YP_005380687.1| - 6.6e-05 22.4 0.2 0.17 11.3 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|383319846|ref|YP_005380687.1| - 0.0068 16.5 0.1 0.046 13.8 0.0 2.2 1 1 1 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|383319846|ref|YP_005380687.1| - 0.053 13.9 0.0 0.1 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|383319846|ref|YP_005380687.1| - 0.069 13.7 0.0 0.2 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain RYDR_ITPR PF01365.21 gi|383319846|ref|YP_005380687.1| - 0.098 12.1 0.3 0.42 10.0 0.2 1.9 2 0 0 2 2 2 0 RIH domain DUF4350 PF14258.6 gi|383319847|ref|YP_005380688.1| - 0.00017 22.0 0.1 0.00068 20.0 0.1 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|383319847|ref|YP_005380688.1| - 0.0019 17.7 0.0 0.0026 17.3 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system CarboxypepD_reg PF13620.6 gi|383319848|ref|YP_005380689.1| - 1.7e-12 47.4 4.8 0.0016 18.6 0.2 4.5 4 0 0 4 4 4 3 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|383319848|ref|YP_005380689.1| - 2e-09 37.3 1.2 0.0046 16.9 0.0 4.3 4 0 0 4 4 4 2 Bacterial Ig-like domain (group 1) Big_3_5 PF16640.5 gi|383319848|ref|YP_005380689.1| - 8.2e-07 29.1 5.2 0.0065 16.6 0.6 3.7 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 3) MG2 PF01835.19 gi|383319848|ref|YP_005380689.1| - 0.0018 18.7 0.0 2.4 8.7 0.0 4.0 4 1 0 4 4 4 1 MG2 domain DUF4129 PF13559.6 gi|383319848|ref|YP_005380689.1| - 0.0027 17.9 0.0 0.0092 16.2 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF1416 PF07210.12 gi|383319848|ref|YP_005380689.1| - 0.0047 16.8 0.1 5.7 6.9 0.0 3.1 3 0 0 3 3 3 2 Protein of unknown function (DUF1416) Dioxygenase_C PF00775.21 gi|383319848|ref|YP_005380689.1| - 0.011 15.2 0.3 6.5 6.1 0.0 4.4 4 1 1 5 5 5 0 Dioxygenase Invasin_D3 PF09134.10 gi|383319848|ref|YP_005380689.1| - 0.015 15.6 0.3 8.3 6.8 0.0 3.7 4 0 0 4 4 4 0 Invasin, domain 3 MG4 PF17789.1 gi|383319848|ref|YP_005380689.1| - 0.019 15.1 0.1 47 4.2 0.0 4.1 4 0 0 4 4 4 0 Macroglobulin domain MG4 DUF824 PF05688.11 gi|383319848|ref|YP_005380689.1| - 0.099 12.5 0.2 5.3 6.9 0.0 2.9 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) Ribosomal_60s PF00428.19 gi|383319850|ref|YP_005380691.1| - 1.1e-19 70.7 18.6 1.4e-19 70.4 18.6 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|383319850|ref|YP_005380691.1| - 0.0034 17.6 1.7 0.0045 17.2 1.7 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain CAP_N PF01213.19 gi|383319850|ref|YP_005380691.1| - 0.085 12.3 2.0 0.085 12.3 2.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal DUF2057 PF09829.9 gi|383319850|ref|YP_005380691.1| - 0.27 11.4 1.4 0.28 11.3 1.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2057) Shadoo PF14999.6 gi|383319850|ref|YP_005380691.1| - 3.9 7.6 9.3 5.8 7.0 9.3 1.3 1 1 0 1 1 1 0 Shadow of prion protein, neuroprotective Ribosomal_L10 PF00466.20 gi|383319851|ref|YP_005380692.1| - 9.3e-24 83.5 0.2 2.9e-23 81.9 0.2 1.8 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|383319851|ref|YP_005380692.1| - 3e-19 68.8 0.1 6.9e-19 67.6 0.1 1.7 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L1 PF00687.21 gi|383319852|ref|YP_005380693.1| - 2.9e-47 161.0 0.4 3.5e-47 160.8 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family ER-remodelling PF14755.6 gi|383319852|ref|YP_005380693.1| - 0.059 13.7 0.1 0.089 13.1 0.1 1.2 1 0 0 1 1 1 0 Intracellular membrane remodeller DUF2730 PF10805.8 gi|383319852|ref|YP_005380693.1| - 0.076 13.1 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Ribosomal_L11_N PF03946.14 gi|383319853|ref|YP_005380694.1| - 9.4e-26 89.5 0.8 9.4e-26 89.5 0.8 1.8 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|383319853|ref|YP_005380694.1| - 5e-19 68.6 0.1 9e-19 67.8 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain p6 PF17548.2 gi|383319853|ref|YP_005380694.1| - 0.018 15.0 0.0 0.04 13.9 0.0 1.6 1 0 0 1 1 1 0 Histone-like Protein p6 Pyridox_ox_2 PF12900.7 gi|383319854|ref|YP_005380695.1| - 2e-19 70.0 0.0 2.5e-19 69.7 0.0 1.3 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|383319854|ref|YP_005380695.1| - 3.2e-05 24.0 0.0 4.7e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Fucokinase PF07959.12 gi|383319854|ref|YP_005380695.1| - 0.0072 15.3 0.0 0.0091 15.0 0.0 1.1 1 0 0 1 1 1 1 L-fucokinase CarboxypepD_reg PF13620.6 gi|383319856|ref|YP_005380697.1| - 0.00046 20.4 1.5 0.00046 20.4 1.5 3.3 2 1 1 3 3 3 1 Carboxypeptidase regulatory-like domain fn3_3 PF14686.6 gi|383319856|ref|YP_005380697.1| - 0.0045 16.7 0.3 0.016 15.0 0.3 2.1 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II CarbopepD_reg_2 PF13715.6 gi|383319856|ref|YP_005380697.1| - 0.008 16.2 0.1 0.038 14.0 0.0 2.2 1 1 1 2 2 2 1 CarboxypepD_reg-like domain Y_Y_Y PF07495.13 gi|383319856|ref|YP_005380697.1| - 0.08 12.9 0.0 0.23 11.5 0.0 1.8 1 0 0 1 1 1 0 Y_Y_Y domain PDDEXK_3 PF13366.6 gi|383319859|ref|YP_005380700.1| - 1.6e-44 151.0 0.3 1.8e-44 150.8 0.3 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|383319859|ref|YP_005380700.1| - 0.06 13.4 0.0 0.083 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF83 CytoC_RC PF02276.18 gi|383319860|ref|YP_005380701.1| - 3.6e-06 26.6 0.0 11 5.3 0.0 4.9 1 1 4 5 5 5 5 Photosynthetic reaction centre cytochrome C subunit EVE PF01878.18 gi|383319860|ref|YP_005380701.1| - 0.0022 18.0 2.9 1e+02 2.9 0.0 5.4 5 1 1 6 6 6 0 EVE domain GHD PF17834.1 gi|383319860|ref|YP_005380701.1| - 0.24 11.5 3.0 1.4e+02 2.6 0.0 4.5 2 1 4 6 6 6 0 Beta-sandwich domain in beta galactosidase HD_4 PF13328.6 gi|383319861|ref|YP_005380702.1| - 8.8e-05 22.3 0.1 0.00014 21.7 0.1 1.3 1 0 0 1 1 1 1 HD domain DUF5474 PF17568.2 gi|383319861|ref|YP_005380702.1| - 0.011 15.7 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5474) tRNA_anti-like PF12869.7 gi|383319863|ref|YP_005380704.1| - 0.0011 18.7 0.0 0.016 14.8 0.0 2.1 1 1 0 1 1 1 1 tRNA_anti-like MethyltransfD12 PF02086.15 gi|383319864|ref|YP_005380705.1| - 4.8e-61 206.7 8.0 5.5e-61 206.5 8.0 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.18 gi|383319865|ref|YP_005380706.1| - 2.3e-24 86.4 0.2 4.4e-15 56.0 0.0 2.1 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|383319865|ref|YP_005380706.1| - 3.4e-12 46.5 0.0 3.7e-11 43.1 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|383319865|ref|YP_005380706.1| - 4.1e-06 26.7 0.0 5.3e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383319865|ref|YP_005380706.1| - 1.6e-05 25.5 0.0 0.00028 21.5 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383319865|ref|YP_005380706.1| - 2.9e-05 24.7 0.0 0.00018 22.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|383319865|ref|YP_005380706.1| - 0.0019 17.6 0.0 0.0027 17.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|383319865|ref|YP_005380706.1| - 0.0035 17.1 0.0 0.0042 16.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|383319865|ref|YP_005380706.1| - 0.0089 15.6 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|383319865|ref|YP_005380706.1| - 0.012 15.2 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|383319865|ref|YP_005380706.1| - 0.018 14.7 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|383319865|ref|YP_005380706.1| - 0.061 13.2 0.0 0.085 12.7 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain AviRa PF11599.8 gi|383319865|ref|YP_005380706.1| - 0.083 12.3 0.0 7.1 6.0 0.0 2.1 1 1 1 2 2 2 0 RRNA methyltransferase AviRa HD_4 PF13328.6 gi|383319868|ref|YP_005380709.1| - 8.8e-05 22.3 0.1 0.00014 21.7 0.1 1.3 1 0 0 1 1 1 1 HD domain DUF5474 PF17568.2 gi|383319868|ref|YP_005380709.1| - 0.011 15.7 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5474) tRNA_anti-like PF12869.7 gi|383319870|ref|YP_005380711.1| - 0.0011 18.7 0.0 0.016 14.8 0.0 2.1 1 1 0 1 1 1 1 tRNA_anti-like MethyltransfD12 PF02086.15 gi|383319871|ref|YP_005380712.1| - 4.8e-61 206.7 8.0 5.5e-61 206.5 8.0 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.18 gi|383319872|ref|YP_005380713.1| - 2.3e-27 96.2 0.5 4.8e-15 55.9 0.0 2.0 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|383319872|ref|YP_005380713.1| - 3.8e-12 46.3 0.0 4e-11 43.0 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|383319872|ref|YP_005380713.1| - 4.6e-06 26.5 0.0 6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383319872|ref|YP_005380713.1| - 1.8e-05 25.3 0.0 0.00031 21.3 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383319872|ref|YP_005380713.1| - 3.1e-05 24.6 0.0 0.0002 22.0 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|383319872|ref|YP_005380713.1| - 0.0021 17.5 0.0 0.003 17.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|383319872|ref|YP_005380713.1| - 0.0039 17.0 0.0 0.0046 16.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|383319872|ref|YP_005380713.1| - 0.0097 15.5 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|383319872|ref|YP_005380713.1| - 0.013 15.0 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|383319872|ref|YP_005380713.1| - 0.018 14.7 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|383319872|ref|YP_005380713.1| - 0.049 13.5 0.0 0.09 12.6 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain AviRa PF11599.8 gi|383319872|ref|YP_005380713.1| - 0.093 12.2 0.0 6.5 6.1 0.0 2.2 1 1 1 2 2 2 0 RRNA methyltransferase AviRa Macro PF01661.21 gi|383319875|ref|YP_005380716.1| - 1e-44 151.3 0.1 1.3e-44 151.0 0.1 1.2 1 0 0 1 1 1 1 Macro domain AAA_14 PF13173.6 gi|383319876|ref|YP_005380717.1| - 0.00034 20.6 0.2 0.00047 20.2 0.2 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|383319876|ref|YP_005380717.1| - 0.0053 16.7 0.1 0.007 16.3 0.1 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DUF2497 PF10691.9 gi|383319876|ref|YP_005380717.1| - 0.067 13.6 0.0 0.08 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2497) AAA_14 PF13173.6 gi|383319877|ref|YP_005380718.1| - 2.2e-20 73.0 1.1 2.5e-18 66.4 0.0 3.0 2 1 1 3 3 3 2 AAA domain DUF4143 PF13635.6 gi|383319877|ref|YP_005380718.1| - 2.9e-12 46.8 0.0 6.1e-12 45.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) DUF2551 PF10826.8 gi|383319877|ref|YP_005380718.1| - 0.0014 18.8 0.1 0.0031 17.7 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Polysacc_synt PF01943.17 gi|383319878|ref|YP_005380719.1| - 4.1e-10 39.5 33.1 4.1e-10 39.5 33.1 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|383319878|ref|YP_005380719.1| - 0.00083 19.4 8.7 0.00083 19.4 8.7 3.9 2 1 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|383319878|ref|YP_005380719.1| - 0.001 18.4 19.2 0.001 18.4 19.2 2.6 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|383319879|ref|YP_005380720.1| - 1.8e-60 204.4 0.0 2.2e-60 204.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|383319879|ref|YP_005380720.1| - 3.4e-60 204.2 0.0 9.4e-60 202.7 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|383319879|ref|YP_005380720.1| - 2.5e-24 85.8 0.0 3.4e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|383319879|ref|YP_005380720.1| - 1e-21 77.3 0.0 3.6e-21 75.6 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|383319879|ref|YP_005380720.1| - 1.9e-12 46.9 0.0 2.8e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|383319879|ref|YP_005380720.1| - 1.9e-07 31.2 0.0 3e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|383319879|ref|YP_005380720.1| - 3.8e-06 26.3 0.0 0.0074 15.5 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein Sacchrp_dh_NADP PF03435.18 gi|383319879|ref|YP_005380720.1| - 0.00082 19.6 0.0 0.0013 18.9 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|383319879|ref|YP_005380720.1| - 0.0036 16.8 0.1 0.0064 16.0 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|383319879|ref|YP_005380720.1| - 0.0057 16.2 0.1 0.021 14.4 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.18 gi|383319879|ref|YP_005380720.1| - 0.028 14.7 0.2 0.062 13.6 0.1 1.6 1 1 0 1 1 1 0 TrkA-N domain Ldh_1_N PF00056.23 gi|383319879|ref|YP_005380720.1| - 0.049 13.7 0.1 0.083 13.0 0.1 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Glyco_hydro_4 PF02056.16 gi|383319879|ref|YP_005380720.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.14 gi|383319880|ref|YP_005380721.1| - 3.4e-48 163.7 0.0 5.8e-48 162.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|383319880|ref|YP_005380721.1| - 1.4e-32 111.7 0.0 3.5e-32 110.5 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|383319880|ref|YP_005380721.1| - 1.3e-21 76.9 0.1 7.2e-21 74.6 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|383319880|ref|YP_005380721.1| - 6.3e-07 29.7 0.0 1.5e-05 25.2 0.0 2.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|383319880|ref|YP_005380721.1| - 0.00025 21.1 0.0 0.032 14.2 0.0 2.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|383319880|ref|YP_005380721.1| - 0.00094 18.6 0.4 0.15 11.5 0.0 2.7 2 2 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|383319880|ref|YP_005380721.1| - 0.0054 16.6 0.3 0.017 15.0 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Mur_ligase PF01225.25 gi|383319880|ref|YP_005380721.1| - 0.097 13.0 0.0 0.31 11.4 0.0 1.9 1 0 0 1 1 1 0 Mur ligase family, catalytic domain AlaDh_PNT_C PF01262.21 gi|383319880|ref|YP_005380721.1| - 0.12 11.6 0.0 0.35 10.1 0.0 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_11 PF14833.6 gi|383319880|ref|YP_005380721.1| - 0.16 12.2 0.4 0.35 11.1 0.4 1.5 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Methyltransf_23 PF13489.6 gi|383319881|ref|YP_005380722.1| - 4.1e-11 43.0 0.0 5.3e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383319881|ref|YP_005380722.1| - 1e-09 38.9 0.0 4e-09 37.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|383319881|ref|YP_005380722.1| - 5.5e-08 33.5 0.0 7e-07 29.9 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383319881|ref|YP_005380722.1| - 4e-05 23.5 0.0 0.00019 21.2 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383319881|ref|YP_005380722.1| - 4.5e-05 24.1 0.0 0.00029 21.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.14 gi|383319881|ref|YP_005380722.1| - 0.0049 16.3 0.1 0.01 15.2 0.1 1.6 1 1 1 2 2 2 1 Tellurite resistance protein TehB Glycos_transf_2 PF00535.26 gi|383319882|ref|YP_005380723.1| - 3.2e-18 66.1 0.7 1.2e-08 35.0 0.0 2.5 2 1 1 3 3 3 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|383319882|ref|YP_005380723.1| - 3.4e-09 37.0 0.0 7.4e-05 22.7 0.0 2.5 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|383319882|ref|YP_005380723.1| - 0.0047 16.9 0.0 0.01 15.8 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_1 PF00534.20 gi|383319884|ref|YP_005380725.1| - 1.1e-31 109.6 0.0 1.8e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383319884|ref|YP_005380725.1| - 2.5e-23 83.0 0.0 3.8e-23 82.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383319884|ref|YP_005380725.1| - 3.3e-10 40.2 0.0 5.7e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|383319884|ref|YP_005380725.1| - 0.00043 20.3 1.3 0.0013 18.7 1.1 1.9 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|383319884|ref|YP_005380725.1| - 0.0094 16.4 0.0 0.013 16.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DUF1972 PF09314.11 gi|383319885|ref|YP_005380726.1| - 1.6e-16 60.5 3.0 1.7e-16 60.3 1.0 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF1972) Glycos_transf_1 PF00534.20 gi|383319885|ref|YP_005380726.1| - 4.2e-12 45.9 0.1 7.5e-12 45.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383319885|ref|YP_005380726.1| - 6.8e-07 29.8 0.0 2.6e-06 27.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383319885|ref|YP_005380726.1| - 8.8e-06 25.8 0.0 8.9e-05 22.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|383319885|ref|YP_005380726.1| - 2.1e-05 24.8 0.0 6.8e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|383319885|ref|YP_005380726.1| - 3.4e-05 23.9 0.0 9.6e-05 22.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like MyTH4 PF00784.17 gi|383319885|ref|YP_005380726.1| - 0.2 12.2 0.0 26 5.3 0.0 2.3 2 0 0 2 2 2 0 MyTH4 domain 3HCDH_N PF02737.18 gi|383319886|ref|YP_005380727.1| - 3.7e-55 186.6 0.4 5.3e-55 186.1 0.4 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|383319886|ref|YP_005380727.1| - 1.6e-31 108.7 0.0 3.3e-31 107.8 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain F420_oxidored PF03807.17 gi|383319886|ref|YP_005380727.1| - 2.6e-05 24.7 0.2 6.5e-05 23.4 0.2 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|383319886|ref|YP_005380727.1| - 0.00014 22.1 0.1 0.00026 21.2 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|383319886|ref|YP_005380727.1| - 0.00096 19.4 0.1 0.0018 18.5 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|383319886|ref|YP_005380727.1| - 0.0011 19.0 0.2 0.0024 17.9 0.2 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GDP_Man_Dehyd PF16363.5 gi|383319886|ref|YP_005380727.1| - 0.0049 16.3 0.1 0.008 15.6 0.1 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_Gly3P_dh_N PF01210.23 gi|383319886|ref|YP_005380727.1| - 0.009 16.0 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|383319886|ref|YP_005380727.1| - 0.0098 15.3 0.0 0.018 14.4 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|383319886|ref|YP_005380727.1| - 0.012 15.3 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA KR PF08659.10 gi|383319886|ref|YP_005380727.1| - 0.05 13.5 0.0 0.079 12.9 0.0 1.3 1 0 0 1 1 1 0 KR domain Epimerase PF01370.21 gi|383319886|ref|YP_005380727.1| - 0.052 13.0 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Methyltransf_31 PF13847.6 gi|383319886|ref|YP_005380727.1| - 0.061 13.1 0.2 0.31 10.8 0.1 2.1 2 0 0 2 2 2 0 Methyltransferase domain TrkA_N PF02254.18 gi|383319886|ref|YP_005380727.1| - 0.073 13.3 1.8 0.18 12.1 0.7 2.2 2 1 0 2 2 2 0 TrkA-N domain zf-3CxxC_2 PF17180.4 gi|383319886|ref|YP_005380727.1| - 0.12 13.1 2.9 0.3 11.8 2.9 1.6 1 0 0 1 1 1 0 Zinc-binding domain zf-C3HC4_3 PF13920.6 gi|383319886|ref|YP_005380727.1| - 0.14 12.1 3.1 0.23 11.4 3.1 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Thiolase_N PF00108.23 gi|383319887|ref|YP_005380728.1| - 8.5e-16 58.1 0.0 7.6e-15 55.0 0.0 2.1 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|383319887|ref|YP_005380728.1| - 2.5e-12 46.5 0.2 1.8e-11 43.7 0.1 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|383319887|ref|YP_005380728.1| - 0.00063 19.5 0.6 0.37 10.7 0.0 2.5 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.26 gi|383319887|ref|YP_005380728.1| - 0.00066 19.3 0.5 0.0048 16.5 0.4 2.2 1 1 1 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|383319887|ref|YP_005380728.1| - 0.00066 19.7 0.1 0.095 12.7 0.0 3.0 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain Hexapep PF00132.24 gi|383319888|ref|YP_005380729.1| - 1.3e-09 37.3 11.9 1.2e-06 28.0 1.4 3.6 4 0 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|383319888|ref|YP_005380729.1| - 7e-05 22.5 6.8 0.0046 16.7 2.5 2.8 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase DUF3473 PF11959.8 gi|383319889|ref|YP_005380730.1| - 3.7e-28 98.1 0.0 5.1e-28 97.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) Polysacc_deac_1 PF01522.21 gi|383319889|ref|YP_005380730.1| - 4.9e-23 81.4 0.0 6.5e-23 81.0 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|383319889|ref|YP_005380730.1| - 8.5e-05 22.3 0.0 0.00015 21.5 0.0 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Glyco_hydro_57 PF03065.15 gi|383319889|ref|YP_005380730.1| - 8.6e-05 21.9 0.0 0.00013 21.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF2194 PF09960.9 gi|383319889|ref|YP_005380730.1| - 0.0017 16.8 0.0 0.0022 16.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2194) Glycos_transf_2 PF00535.26 gi|383319890|ref|YP_005380731.1| - 3.6e-23 82.2 0.0 5.1e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|383319890|ref|YP_005380731.1| - 7.7e-09 35.8 0.0 1e-08 35.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|383319890|ref|YP_005380731.1| - 0.015 15.8 0.0 0.027 15.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|383319890|ref|YP_005380731.1| - 0.019 14.4 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 PGM_PMM_II PF02879.16 gi|383319890|ref|YP_005380731.1| - 0.034 14.8 0.1 0.095 13.3 0.1 1.7 1 1 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ParBc PF02195.18 gi|383319891|ref|YP_005380732.1| - 3.3e-11 43.3 0.4 8.4e-11 42.0 0.4 1.7 1 0 0 1 1 1 1 ParB-like nuclease domain Sigma70_r4_2 PF08281.12 gi|383319891|ref|YP_005380732.1| - 0.03 14.0 0.0 0.12 12.1 0.0 2.1 1 0 0 1 1 1 0 Sigma-70, region 4 4HBT PF03061.22 gi|383319892|ref|YP_005380733.1| - 2.4e-12 47.0 0.2 3.2e-12 46.6 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|383319892|ref|YP_005380733.1| - 0.00012 22.2 0.1 0.00016 21.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) PS-DH PF14765.6 gi|383319892|ref|YP_005380733.1| - 0.025 13.8 0.0 0.029 13.6 0.0 1.2 1 0 0 1 1 1 0 Polyketide synthase dehydratase NaeI PF09126.10 gi|383319893|ref|YP_005380734.1| - 0.0015 17.8 0.0 0.0017 17.7 0.0 1.1 1 0 0 1 1 1 1 Restriction endonuclease NaeI DUF2795 PF11387.8 gi|383319894|ref|YP_005380735.1| - 1.4e-16 60.4 0.0 1.8e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) KGG PF10685.9 gi|383319895|ref|YP_005380736.1| - 6.2e-16 58.1 13.8 0.001 19.3 0.6 4.4 4 0 0 4 4 4 4 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|383319895|ref|YP_005380736.1| - 7.2e-09 36.1 19.3 9.3e-05 22.9 6.3 2.1 1 1 1 2 2 2 2 Small hydrophilic plant seed protein SASP PF00269.20 gi|383319895|ref|YP_005380736.1| - 0.031 14.3 8.9 44 4.2 8.9 2.8 1 1 0 1 1 1 0 Small, acid-soluble spore proteins, alpha/beta type PARP_reg PF02877.14 gi|383319895|ref|YP_005380736.1| - 0.055 13.6 0.2 2.1 8.5 0.2 2.5 1 1 0 1 1 1 0 Poly(ADP-ribose) polymerase, regulatory domain zf-GRF PF06839.12 gi|383319895|ref|YP_005380736.1| - 0.1 12.7 3.4 40 4.4 0.9 3.3 1 1 2 3 3 3 0 GRF zinc finger ThuA PF06283.11 gi|383319895|ref|YP_005380736.1| - 0.32 11.2 7.7 20 5.3 0.3 3.2 1 1 2 3 3 3 0 Trehalose utilisation Integrase_H2C2 PF17921.1 gi|383319895|ref|YP_005380736.1| - 9.9 6.4 8.7 67 3.7 0.6 3.6 1 1 3 4 4 4 0 Integrase zinc binding domain TPP_enzyme_C PF02775.21 gi|383319896|ref|YP_005380737.1| - 7.2e-17 61.6 0.1 2.1e-16 60.1 0.1 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|383319896|ref|YP_005380737.1| - 6.8e-09 35.6 0.0 3.3e-08 33.3 0.0 2.1 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PALP PF00291.25 gi|383319897|ref|YP_005380738.1| - 2.6e-30 105.8 0.0 3.4e-30 105.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.16 gi|383319897|ref|YP_005380738.1| - 0.11 12.8 0.9 0.22 11.9 0.9 1.3 1 0 0 1 1 1 0 C1 domain Fer4_8 PF13183.6 gi|383319898|ref|YP_005380739.1| - 6.3e-09 36.2 7.9 1.2e-08 35.3 7.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383319898|ref|YP_005380739.1| - 1.5e-08 34.6 8.9 3.2e-08 33.6 8.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383319898|ref|YP_005380739.1| - 2.3e-08 34.0 10.6 4.1e-08 33.2 10.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383319898|ref|YP_005380739.1| - 8.3e-08 32.7 10.5 1.8e-07 31.6 10.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383319898|ref|YP_005380739.1| - 1.9e-07 31.5 9.1 1.9e-07 31.5 9.1 1.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383319898|ref|YP_005380739.1| - 7.4e-07 30.0 6.0 0.0011 19.8 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|383319898|ref|YP_005380739.1| - 3.9e-05 23.3 13.3 0.00041 20.0 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|383319898|ref|YP_005380739.1| - 0.00028 21.1 2.3 0.00028 21.1 2.3 2.6 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|383319898|ref|YP_005380739.1| - 0.00034 20.5 14.1 0.0017 18.3 4.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383319898|ref|YP_005380739.1| - 0.0027 17.7 12.1 0.0041 17.1 2.4 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|383319898|ref|YP_005380739.1| - 0.029 15.2 1.1 0.029 15.2 1.1 2.4 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383319898|ref|YP_005380739.1| - 0.075 13.6 1.9 0.075 13.6 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|383319898|ref|YP_005380739.1| - 0.09 13.5 3.7 2.4 8.9 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|383319898|ref|YP_005380739.1| - 0.13 12.4 11.8 0.75 10.0 11.2 2.2 2 1 0 2 2 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|383319898|ref|YP_005380739.1| - 9.5 7.4 18.5 9 7.5 6.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain CCG PF02754.16 gi|383319899|ref|YP_005380740.1| - 5.3e-20 71.4 1.0 1.8e-13 50.5 0.2 2.4 2 0 0 2 2 2 2 Cysteine-rich domain FlpD PF02662.16 gi|383319900|ref|YP_005380741.1| - 1.5e-25 89.6 0.0 5.4e-25 87.8 0.0 2.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.27 gi|383319900|ref|YP_005380741.1| - 3.5e-24 83.6 32.0 5.2e-08 32.4 3.6 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|383319900|ref|YP_005380741.1| - 6.2e-17 61.5 24.0 6.2e-09 35.8 3.7 4.0 3 1 0 3 3 3 3 4Fe-4S dicluster domain Pyr_redox_2 PF07992.14 gi|383319900|ref|YP_005380741.1| - 4.2e-15 55.8 0.3 3e-07 30.0 0.2 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|383319900|ref|YP_005380741.1| - 7.9e-15 55.2 27.6 4.8e-06 27.1 6.0 4.9 3 2 2 5 5 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383319900|ref|YP_005380741.1| - 1e-14 53.8 40.2 1.4e-06 28.1 2.4 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|383319900|ref|YP_005380741.1| - 4.6e-13 49.9 17.5 0.0021 19.0 0.2 4.9 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|383319900|ref|YP_005380741.1| - 8.1e-13 48.3 22.3 6.8e-07 29.4 9.8 3.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383319900|ref|YP_005380741.1| - 1.7e-12 46.6 27.7 6.6e-05 22.8 3.4 4.8 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383319900|ref|YP_005380741.1| - 3.2e-11 43.2 23.4 0.0048 17.0 0.4 5.1 5 0 0 5 5 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383319900|ref|YP_005380741.1| - 6.6e-11 42.8 16.9 0.0018 19.0 1.6 5.0 4 0 0 4 4 4 3 4Fe-4S single cluster domain NAD_binding_8 PF13450.6 gi|383319900|ref|YP_005380741.1| - 1.9e-09 37.6 0.2 4.3e-09 36.5 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|383319900|ref|YP_005380741.1| - 5e-09 36.0 0.1 6.9e-09 35.6 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|383319900|ref|YP_005380741.1| - 2.4e-08 33.5 0.1 6.3e-07 28.8 0.4 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A DAO PF01266.24 gi|383319900|ref|YP_005380741.1| - 8.7e-08 32.1 0.2 2e-06 27.7 0.1 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer4_17 PF13534.6 gi|383319900|ref|YP_005380741.1| - 1.8e-06 28.4 28.1 0.029 14.9 11.4 4.6 2 2 2 4 4 4 3 4Fe-4S dicluster domain Thi4 PF01946.17 gi|383319900|ref|YP_005380741.1| - 1.9e-06 27.3 0.1 3.6e-06 26.4 0.1 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|383319900|ref|YP_005380741.1| - 5.8e-06 25.6 1.6 9.7e-06 24.9 1.1 1.6 2 0 0 2 2 2 1 FAD binding domain Fer4_22 PF17179.4 gi|383319900|ref|YP_005380741.1| - 1.2e-05 26.0 14.6 0.17 12.7 0.3 4.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383319900|ref|YP_005380741.1| - 4.6e-05 23.6 35.5 0.0069 16.8 2.7 4.3 4 0 0 4 4 3 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|383319900|ref|YP_005380741.1| - 7.9e-05 23.0 27.4 0.008 16.6 12.6 4.3 2 2 4 6 6 5 4 4Fe-4S dicluster domain Pyr_redox_3 PF13738.6 gi|383319900|ref|YP_005380741.1| - 0.00027 20.3 0.0 0.0013 18.0 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_13 PF13370.6 gi|383319900|ref|YP_005380741.1| - 0.00029 21.3 28.9 0.083 13.4 1.6 4.7 4 0 0 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I HI0933_like PF03486.14 gi|383319900|ref|YP_005380741.1| - 0.00052 18.8 1.5 0.00091 18.0 1.5 1.4 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|383319900|ref|YP_005380741.1| - 0.00085 18.7 0.6 0.0014 18.0 0.6 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|383319900|ref|YP_005380741.1| - 0.0011 19.5 2.1 0.0039 17.7 0.7 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_18 PF13746.6 gi|383319900|ref|YP_005380741.1| - 0.0017 18.6 15.7 0.37 11.0 4.9 3.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Trp_halogenase PF04820.14 gi|383319900|ref|YP_005380741.1| - 0.005 15.7 0.5 0.0084 15.0 0.2 1.6 2 0 0 2 2 2 1 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|383319900|ref|YP_005380741.1| - 0.0093 15.1 0.1 0.04 13.0 0.1 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein Fer4_3 PF12798.7 gi|383319900|ref|YP_005380741.1| - 0.013 16.4 4.8 0.013 16.4 4.8 5.9 7 0 0 7 7 4 0 4Fe-4S binding domain Amino_oxidase PF01593.24 gi|383319900|ref|YP_005380741.1| - 0.033 13.5 0.1 0.052 12.8 0.1 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 gi|383319900|ref|YP_005380741.1| - 0.04 13.2 0.2 0.078 12.3 0.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|383319900|ref|YP_005380741.1| - 0.14 12.6 0.5 2.8 8.4 0.1 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding DUF4147 PF13660.6 gi|383319901|ref|YP_005380742.1| - 2.1e-78 263.0 1.4 2.6e-78 262.7 0.2 1.7 2 1 1 3 3 3 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|383319901|ref|YP_005380742.1| - 3.1e-36 123.9 2.8 5.9e-36 123.0 2.8 1.5 1 0 0 1 1 1 1 MOFRL family Metalloenzyme PF01676.18 gi|383319902|ref|YP_005380743.1| - 6.4e-09 35.5 0.0 6.2e-08 32.3 0.0 2.1 2 0 0 2 2 2 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|383319902|ref|YP_005380743.1| - 6e-07 29.4 0.1 2.8e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|383319902|ref|YP_005380743.1| - 0.0006 19.3 0.0 0.0021 17.5 0.0 1.7 1 1 0 2 2 2 1 Sulfatase Alk_phosphatase PF00245.20 gi|383319902|ref|YP_005380743.1| - 0.012 14.6 0.1 0.17 10.8 0.0 2.3 2 1 1 3 3 3 0 Alkaline phosphatase E2R135 PF11570.8 gi|383319902|ref|YP_005380743.1| - 0.023 15.0 0.0 0.037 14.3 0.0 1.3 1 0 0 1 1 1 0 Coiled-coil receptor-binding R-domain of colicin E2 DeoC PF01791.9 gi|383319903|ref|YP_005380744.1| - 2.4e-53 181.2 0.1 2.9e-53 180.9 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase BPL_C PF02237.17 gi|383319903|ref|YP_005380744.1| - 0.017 15.0 0.0 0.036 14.0 0.0 1.5 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain PEP_mutase PF13714.6 gi|383319903|ref|YP_005380744.1| - 0.043 13.3 0.2 0.086 12.3 0.1 1.6 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase HTH_24 PF13412.6 gi|383319904|ref|YP_005380745.1| - 2.6e-22 78.1 2.1 2.4e-10 39.8 0.1 2.6 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|383319904|ref|YP_005380745.1| - 6.5e-09 35.6 0.0 0.00047 20.0 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|383319904|ref|YP_005380745.1| - 3.6e-08 33.1 0.0 0.00046 20.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|383319904|ref|YP_005380745.1| - 3e-07 30.2 0.0 0.015 15.1 0.0 2.2 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|383319904|ref|YP_005380745.1| - 1.7e-06 28.0 0.0 0.0012 18.8 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_IclR PF09339.10 gi|383319904|ref|YP_005380745.1| - 3.4e-05 23.6 0.0 0.01 15.6 0.0 2.2 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_10 PF04967.12 gi|383319904|ref|YP_005380745.1| - 0.00018 21.2 0.1 0.65 9.8 0.0 2.3 2 0 0 2 2 2 2 HTH DNA binding domain HTH_11 PF08279.12 gi|383319904|ref|YP_005380745.1| - 0.00073 19.4 0.2 0.8 9.7 0.1 2.4 2 0 0 2 2 2 2 HTH domain HTH_AsnC-type PF13404.6 gi|383319904|ref|YP_005380745.1| - 0.0022 17.8 0.0 0.2 11.5 0.0 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|383319904|ref|YP_005380745.1| - 0.011 16.2 0.0 2.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|383319904|ref|YP_005380745.1| - 0.018 15.4 0.0 0.4 11.1 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator RP-C PF03428.13 gi|383319904|ref|YP_005380745.1| - 0.039 13.6 0.0 0.92 9.1 0.0 2.1 2 0 0 2 2 2 0 Replication protein C N-terminal domain Mga PF05043.13 gi|383319904|ref|YP_005380745.1| - 0.062 13.9 1.3 3.5 8.3 0.2 2.4 2 0 0 2 2 2 0 Mga helix-turn-helix domain PRA-PH PF01503.17 gi|383319906|ref|YP_005380747.1| - 4.3e-16 59.1 0.0 4.6e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|383319906|ref|YP_005380747.1| - 0.00012 22.2 0.1 0.00017 21.7 0.1 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain CBS PF00571.28 gi|383319907|ref|YP_005380748.1| - 6.6e-24 84.1 4.0 8.8e-12 45.3 0.5 2.5 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|383319907|ref|YP_005380748.1| - 5e-13 49.2 0.2 2.5e-12 46.9 0.2 2.0 1 1 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|383319907|ref|YP_005380748.1| - 0.054 12.4 0.0 0.089 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) ParBc_2 PF08857.11 gi|383319907|ref|YP_005380748.1| - 0.057 13.5 0.0 0.28 11.2 0.0 2.0 1 1 0 1 1 1 0 Putative ParB-like nuclease GXGXG PF01493.19 gi|383319909|ref|YP_005380750.1| - 4.5e-40 137.3 13.1 5.9e-40 136.9 13.1 1.1 1 0 0 1 1 1 1 GXGXG motif Glu_synthase PF01645.17 gi|383319910|ref|YP_005380751.1| - 7.1e-137 456.4 0.1 8.8e-137 456.1 0.1 1.1 1 0 0 1 1 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|383319910|ref|YP_005380751.1| - 1.8e-17 63.8 0.0 8.1e-09 35.4 0.1 2.3 2 0 0 2 2 2 2 Glutamate synthase central domain IMPDH PF00478.25 gi|383319910|ref|YP_005380751.1| - 2.1e-09 36.9 7.3 9.3e-08 31.4 5.8 2.6 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|383319910|ref|YP_005380751.1| - 7.1e-09 35.2 12.5 1.6e-07 30.7 7.3 2.9 3 1 0 3 3 3 2 FMN-dependent dehydrogenase Fer4_7 PF12838.7 gi|383319910|ref|YP_005380751.1| - 1.5e-06 28.7 10.6 0.0021 18.6 0.4 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|383319910|ref|YP_005380751.1| - 2.3e-06 27.2 18.9 3.4e-05 23.5 2.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|383319910|ref|YP_005380751.1| - 8.6e-06 25.8 14.8 0.0029 17.7 1.7 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain His_biosynth PF00977.21 gi|383319910|ref|YP_005380751.1| - 3.9e-05 23.2 0.0 8.7e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_21 PF14697.6 gi|383319910|ref|YP_005380751.1| - 0.00011 22.2 12.1 0.00011 22.2 12.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain NMO PF03060.15 gi|383319910|ref|YP_005380751.1| - 0.0013 18.2 3.5 0.0025 17.2 3.5 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_16 PF13484.6 gi|383319910|ref|YP_005380751.1| - 0.0042 18.0 0.9 0.0042 18.0 0.9 3.3 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|383319910|ref|YP_005380751.1| - 0.0054 16.8 1.4 0.0054 16.8 1.4 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|383319910|ref|YP_005380751.1| - 0.0057 17.1 11.4 0.08 13.4 0.5 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383319910|ref|YP_005380751.1| - 0.011 15.9 14.7 0.011 15.9 14.7 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain ThiG PF05690.14 gi|383319910|ref|YP_005380751.1| - 0.015 14.6 0.5 0.037 13.3 0.5 1.6 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|383319910|ref|YP_005380751.1| - 0.029 13.5 2.0 0.059 12.5 2.0 1.4 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) PcrB PF01884.17 gi|383319910|ref|YP_005380751.1| - 0.032 13.7 3.1 0.2 11.1 1.0 2.7 2 1 1 3 3 3 0 PcrB family Fer4_17 PF13534.6 gi|383319910|ref|YP_005380751.1| - 0.041 14.4 11.1 1.1 9.8 0.8 3.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain DHO_dh PF01180.21 gi|383319910|ref|YP_005380751.1| - 0.099 11.8 1.0 0.28 10.4 0.4 1.9 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase GATase_2 PF00310.21 gi|383319911|ref|YP_005380752.1| - 8.3e-11 41.2 0.0 1e-08 34.3 0.0 2.1 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|383319911|ref|YP_005380752.1| - 1.3e-06 28.7 0.0 4.3e-06 27.0 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|383319911|ref|YP_005380752.1| - 9.2e-05 22.3 0.0 0.067 13.1 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferase domain Usp PF00582.26 gi|383319912|ref|YP_005380753.1| - 1e-36 126.6 0.2 1.1e-36 126.4 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family Ribul_P_3_epim PF00834.19 gi|383319912|ref|YP_005380753.1| - 0.049 13.0 0.2 0.082 12.3 0.2 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family AP_endonuc_2 PF01261.24 gi|383319912|ref|YP_005380753.1| - 0.091 12.2 0.2 0.96 8.8 0.1 2.2 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel AA_kinase PF00696.28 gi|383319913|ref|YP_005380754.1| - 1.2e-45 156.0 2.5 1.4e-45 155.8 2.5 1.0 1 0 0 1 1 1 1 Amino acid kinase family Amidohydro_2 PF04909.14 gi|383319913|ref|YP_005380754.1| - 0.19 11.5 0.0 0.27 11.0 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase Pyr_redox_2 PF07992.14 gi|383319914|ref|YP_005380755.1| - 8.4e-30 104.0 0.5 1.1e-29 103.6 0.5 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|383319914|ref|YP_005380755.1| - 7e-19 68.2 0.2 4.8e-14 52.3 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|383319914|ref|YP_005380755.1| - 5.4e-10 38.9 1.1 9.5e-06 24.9 0.1 3.2 2 1 1 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|383319914|ref|YP_005380755.1| - 1e-06 28.1 4.7 9.7e-05 21.6 0.3 2.5 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|383319914|ref|YP_005380755.1| - 8.2e-06 24.8 0.3 0.0012 17.6 0.3 2.3 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|383319914|ref|YP_005380755.1| - 0.00033 20.0 1.2 0.00059 19.2 0.1 1.9 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.27 gi|383319914|ref|YP_005380755.1| - 0.00036 21.0 2.3 0.019 15.5 0.1 3.0 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|383319914|ref|YP_005380755.1| - 0.00046 19.7 0.6 0.00084 18.8 0.6 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|383319914|ref|YP_005380755.1| - 0.003 17.2 1.7 0.014 15.0 0.3 2.4 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|383319914|ref|YP_005380755.1| - 0.0088 15.3 0.0 0.019 14.2 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|383319914|ref|YP_005380755.1| - 0.015 15.5 0.3 0.015 15.5 0.3 2.5 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|383319914|ref|YP_005380755.1| - 0.026 13.9 0.2 0.52 9.6 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|383319914|ref|YP_005380755.1| - 0.029 13.4 0.2 0.36 9.8 0.4 2.1 1 1 1 2 2 2 0 Lycopene cyclase protein IlvN PF07991.12 gi|383319914|ref|YP_005380755.1| - 0.038 13.6 0.2 0.19 11.3 0.1 2.0 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AIRS PF00586.24 gi|383319914|ref|YP_005380755.1| - 0.083 13.6 0.1 0.2 12.3 0.1 1.8 1 0 0 1 1 1 0 AIR synthase related protein, N-terminal domain SSF PF00474.17 gi|383319915|ref|YP_005380756.1| - 2.9e-54 184.5 43.1 2.9e-54 184.5 43.1 1.3 2 0 0 2 2 2 1 Sodium:solute symporter family UbiD PF01977.16 gi|383319916|ref|YP_005380757.1| - 4.5e-106 355.1 0.8 5e-106 355.0 0.8 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ThiF PF00899.21 gi|383319917|ref|YP_005380758.1| - 1.3e-65 221.1 0.0 1.5e-65 220.9 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|383319917|ref|YP_005380758.1| - 0.0017 18.6 0.0 0.0054 17.0 0.0 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|383319917|ref|YP_005380758.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|383319917|ref|YP_005380758.1| - 0.2 11.0 0.2 0.92 8.8 0.1 1.9 1 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TruD PF01142.18 gi|383319918|ref|YP_005380759.1| - 3.8e-154 513.5 0.0 4.4e-154 513.3 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) MTH865 PF07747.11 gi|383319919|ref|YP_005380760.1| - 1.2e-20 73.0 0.0 1.5e-20 72.8 0.0 1.1 1 0 0 1 1 1 1 MTH865-like family PI-PLC-Y PF00387.19 gi|383319919|ref|YP_005380760.1| - 0.019 15.3 0.0 0.025 14.9 0.0 1.1 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, Y domain AAA_26 PF13500.6 gi|383319920|ref|YP_005380761.1| - 6.3e-32 111.0 0.0 1.7e-31 109.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain DRTGG PF07085.12 gi|383319920|ref|YP_005380761.1| - 8.9e-32 109.0 0.2 1.8e-31 108.0 0.2 1.6 1 0 0 1 1 1 1 DRTGG domain Hpr_kinase_N PF02603.16 gi|383319920|ref|YP_005380761.1| - 0.00069 19.6 0.0 0.018 15.1 0.0 2.5 2 0 0 2 2 2 1 HPr Serine kinase N terminus CbiA PF01656.23 gi|383319920|ref|YP_005380761.1| - 0.025 14.6 0.1 0.62 10.1 0.0 2.4 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain PucR PF07905.11 gi|383319920|ref|YP_005380761.1| - 0.083 13.2 0.1 2.3 8.5 0.1 2.8 2 1 0 2 2 2 0 Purine catabolism regulatory protein-like family Penicillinase_R PF03965.16 gi|383319922|ref|YP_005380763.1| - 0.026 14.9 0.0 0.046 14.1 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor MarR PF01047.22 gi|383319922|ref|YP_005380763.1| - 0.06 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_ABP1_N PF18107.1 gi|383319922|ref|YP_005380763.1| - 0.075 12.8 0.1 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Fission yeast centromere protein N-terminal domain Sulfolobus_pRN PF05584.11 gi|383319922|ref|YP_005380763.1| - 0.077 13.1 0.4 0.12 12.4 0.4 1.5 1 1 0 1 1 1 0 Sulfolobus plasmid regulatory protein YabA PF06156.13 gi|383319922|ref|YP_005380763.1| - 0.095 13.3 0.0 0.16 12.6 0.0 1.3 1 0 0 1 1 1 0 Initiation control protein YabA Lip_prot_lig_C PF10437.9 gi|383319922|ref|YP_005380763.1| - 0.099 12.7 0.1 0.29 11.2 0.1 1.8 1 1 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus HhH-GPD PF00730.25 gi|383319923|ref|YP_005380764.1| - 1.7e-14 54.2 0.0 2.4e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|383319923|ref|YP_005380764.1| - 0.033 14.1 0.0 0.088 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif PK_C PF02887.16 gi|383319924|ref|YP_005380765.1| - 9.5e-15 54.9 1.3 1.3e-14 54.5 1.3 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Radical_SAM PF04055.21 gi|383319924|ref|YP_005380765.1| - 0.0018 18.7 0.2 0.0031 17.9 0.2 1.4 1 0 0 1 1 1 1 Radical SAM superfamily AP_endonuc_2 PF01261.24 gi|383319924|ref|YP_005380765.1| - 0.0023 17.4 0.1 0.011 15.1 0.1 2.0 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel UvsW PF11637.8 gi|383319924|ref|YP_005380765.1| - 0.0085 16.2 0.3 0.034 14.2 0.0 2.1 2 0 0 2 2 2 1 ATP-dependant DNA helicase UvsW PALP PF00291.25 gi|383319924|ref|YP_005380765.1| - 0.023 14.1 0.2 0.031 13.7 0.2 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme DDE_Tnp_1 PF01609.21 gi|383319925|ref|YP_005380766.1| - 5.9e-09 35.9 0.3 1.2e-08 34.9 0.3 1.4 1 1 0 1 1 1 1 Transposase DDE domain TGT PF01702.18 gi|383319926|ref|YP_005380767.1| - 3.4e-83 279.7 0.0 4.6e-83 279.3 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|383319926|ref|YP_005380767.1| - 0.00026 20.9 0.0 0.0005 20.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C1 PF14809.6 gi|383319926|ref|YP_005380767.1| - 0.087 13.1 0.1 3.6 8.0 0.1 2.5 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation HATPase_c PF02518.26 gi|383319927|ref|YP_005380768.1| - 6.7e-19 68.4 0.0 1e-18 67.8 0.0 1.2 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|383319927|ref|YP_005380768.1| - 0.079 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|383319927|ref|YP_005380768.1| - 0.13 12.2 0.0 0.29 11.1 0.0 1.6 1 1 0 1 1 1 0 GHKL domain Dus PF01207.17 gi|383319928|ref|YP_005380769.1| - 2.6e-15 56.3 0.3 4.9e-15 55.4 0.3 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|383319928|ref|YP_005380769.1| - 4.7e-06 26.2 0.1 1.2e-05 24.9 0.1 1.6 1 1 0 1 1 1 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|383319928|ref|YP_005380769.1| - 0.00012 21.3 0.8 0.00014 21.0 0.8 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Oxidored_FMN PF00724.20 gi|383319928|ref|YP_005380769.1| - 0.027 13.8 0.1 0.047 12.9 0.1 1.4 1 0 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family CitG PF01874.16 gi|383319929|ref|YP_005380770.1| - 1.6e-71 241.3 0.0 1.8e-71 241.1 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase GA-like PF17573.2 gi|383319929|ref|YP_005380770.1| - 0.12 12.3 0.0 3.2 7.7 0.0 2.3 2 0 0 2 2 2 0 GA-like domain DUF447 PF04289.12 gi|383319930|ref|YP_005380771.1| - 1.8e-44 151.6 0.0 2.1e-44 151.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Putative_PNPOx PF01243.20 gi|383319930|ref|YP_005380771.1| - 0.00045 20.4 0.0 0.0007 19.7 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase H_PPase PF03030.16 gi|383319933|ref|YP_005380774.1| - 1e-266 886.7 46.8 1.2e-266 886.5 46.8 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase GHMP_kinases_C PF08544.13 gi|383319934|ref|YP_005380775.1| - 4e-09 36.7 0.0 8.3e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|383319934|ref|YP_005380775.1| - 1.2e-05 25.5 0.1 3.7e-05 23.9 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain YokU PF14122.6 gi|383319935|ref|YP_005380776.1| - 0.036 14.1 0.3 0.039 13.9 0.3 1.3 1 1 0 1 1 1 0 YokU-like protein, putative antitoxin zinc_ribbon_10 PF10058.9 gi|383319935|ref|YP_005380776.1| - 0.13 12.0 4.6 1.3 8.8 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF4258 PF14076.6 gi|383319936|ref|YP_005380777.1| - 7.7e-07 29.4 0.6 2.4e-06 27.8 0.2 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4258) DDE_Tnp_1 PF01609.21 gi|383319937|ref|YP_005380778.1| - 2.1e-20 73.3 0.2 3e-20 72.8 0.2 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|383319937|ref|YP_005380778.1| - 0.00022 21.2 0.2 0.00039 20.5 0.2 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|383319937|ref|YP_005380778.1| - 0.01 16.1 0.2 0.016 15.4 0.2 1.4 1 0 0 1 1 1 0 Transposase DDE domain K1 PF02960.14 gi|383319937|ref|YP_005380778.1| - 0.013 15.6 0.0 3.5 7.8 0.0 2.4 2 0 0 2 2 2 0 K1 glycoprotein Pilin_N PF07790.11 gi|383319938|ref|YP_005380779.1| - 4.4e-15 56.4 10.3 9.8e-15 55.3 9.7 1.9 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Polbeta PF18765.1 gi|383319939|ref|YP_005380780.1| - 1e-15 57.5 1.4 2.2e-15 56.5 0.2 1.9 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|383319939|ref|YP_005380780.1| - 1.3e-08 35.0 0.3 3.2e-08 33.8 0.1 1.8 2 1 0 2 2 2 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 gi|383319939|ref|YP_005380780.1| - 0.055 13.4 0.0 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 Adenylate cyclase NT domain DUF835 PF05763.12 gi|383319940|ref|YP_005380781.1| - 0.034 13.9 0.0 0.042 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF835) SBBP PF06739.11 gi|383319940|ref|YP_005380781.1| - 0.12 12.4 0.1 0.17 11.9 0.1 1.2 1 0 0 1 1 1 0 Beta-propeller repeat SDH_sah PF01972.16 gi|383319941|ref|YP_005380782.1| - 1.9e-10 40.2 0.0 1.3e-09 37.5 0.0 2.0 1 1 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|383319941|ref|YP_005380782.1| - 0.00067 19.6 0.1 0.0013 18.6 0.1 1.4 1 0 0 1 1 1 1 Clp protease DUF4755 PF15947.5 gi|383319941|ref|YP_005380782.1| - 0.0075 16.2 0.1 1.6 8.7 0.0 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4755) HhH-GPD PF00730.25 gi|383319941|ref|YP_005380782.1| - 0.02 15.4 0.0 0.15 12.5 0.0 2.2 2 1 0 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein T6SS-SciN PF12790.7 gi|383319941|ref|YP_005380782.1| - 0.031 14.0 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 Polbeta PF18765.1 gi|383319943|ref|YP_005380784.1| - 7.4e-16 58.0 0.3 9e-16 57.7 0.3 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|383319943|ref|YP_005380784.1| - 5.2e-09 36.3 0.2 8.1e-09 35.7 0.2 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 gi|383319943|ref|YP_005380784.1| - 0.056 13.3 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain Adenyl_transf PF04439.12 gi|383319943|ref|YP_005380784.1| - 0.08 12.0 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Streptomycin adenylyltransferase TBPIP PF07106.13 gi|383319945|ref|YP_005380786.1| - 0.044 13.7 0.0 0.056 13.4 0.0 1.2 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain DNA_pol_A_exo1 PF01612.20 gi|383319945|ref|YP_005380786.1| - 0.062 13.0 0.0 0.094 12.4 0.0 1.3 1 0 0 1 1 1 0 3'-5' exonuclease Histidinol_dh PF00815.20 gi|383319947|ref|YP_005380788.1| - 4.4e-159 529.9 5.1 5.1e-159 529.7 5.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase tRNA-synt_2 PF00152.20 gi|383319948|ref|YP_005380789.1| - 1.6e-88 296.8 0.0 2e-88 296.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|383319948|ref|YP_005380789.1| - 2.7e-12 46.5 0.1 7.3e-12 45.1 0.3 1.7 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|383319948|ref|YP_005380789.1| - 0.11 12.0 0.0 0.4 10.1 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) PALP PF00291.25 gi|383319949|ref|YP_005380790.1| - 7.8e-47 160.1 0.0 9.7e-47 159.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Wyosine_form PF08608.12 gi|383319950|ref|YP_005380791.1| - 1.3e-22 79.9 0.1 2.5e-22 79.0 0.1 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|383319950|ref|YP_005380791.1| - 1.3e-19 71.2 0.0 2.1e-19 70.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Hydrolase PF00702.26 gi|383319950|ref|YP_005380791.1| - 0.008 16.5 0.0 0.015 15.6 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|383319950|ref|YP_005380791.1| - 0.04 14.0 0.0 0.065 13.3 0.0 1.4 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|383319950|ref|YP_005380791.1| - 0.1 12.7 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF2298 PF10060.9 gi|383319951|ref|YP_005380792.1| - 1.6e-08 33.7 13.4 1.6e-08 33.7 13.4 3.5 2 1 1 4 4 4 3 Uncharacterized membrane protein (DUF2298) DUF1616 PF07760.11 gi|383319951|ref|YP_005380792.1| - 3.7e-08 33.1 21.9 4.4e-05 23.0 6.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF1616) Glyco_trans_4_4 PF13579.6 gi|383319951|ref|YP_005380792.1| - 5.9 7.3 6.6 4.9 7.6 1.7 2.8 3 0 0 3 3 3 0 Glycosyl transferase 4-like domain PIG-P PF08510.12 gi|383319952|ref|YP_005380793.1| - 0.039 13.9 0.2 0.039 13.9 0.2 3.5 4 0 0 4 4 4 0 PIG-P Abhydrolase_2 PF02230.16 gi|383319954|ref|YP_005380795.1| - 0.13 12.0 0.1 0.21 11.3 0.1 1.2 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase CMD PF02627.20 gi|383319955|ref|YP_005380796.1| - 1.5e-15 57.0 0.2 1.8e-15 56.7 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PriX PF18689.1 gi|383319955|ref|YP_005380796.1| - 0.03 14.7 0.0 0.1 12.9 0.0 1.8 2 0 0 2 2 2 0 Primase X XPC-binding PF09280.11 gi|383319955|ref|YP_005380796.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 XPC-binding domain PA26 PF04636.13 gi|383319955|ref|YP_005380796.1| - 0.13 11.2 0.0 0.14 11.0 0.0 1.0 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) Nitroreductase PF00881.24 gi|383319957|ref|YP_005380798.1| - 9e-34 117.0 0.0 1.1e-33 116.7 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|383319957|ref|YP_005380798.1| - 4.3e-14 52.6 0.0 9.3e-06 25.4 0.0 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase PAS_9 PF13426.7 gi|383319958|ref|YP_005380799.1| - 2.5e-12 47.0 0.0 4e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|383319958|ref|YP_005380799.1| - 2.9e-10 40.1 0.0 3.6e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|383319958|ref|YP_005380799.1| - 2.2e-09 37.6 0.0 2.6e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|383319958|ref|YP_005380799.1| - 5.6e-07 29.8 0.0 8.2e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|383319958|ref|YP_005380799.1| - 0.00031 20.7 0.0 0.00048 20.1 0.0 1.3 1 0 0 1 1 1 1 PAS domain NusG_add PF18298.1 gi|383319958|ref|YP_005380799.1| - 0.012 15.9 0.0 0.015 15.5 0.0 1.2 1 0 0 1 1 1 0 NusG additional domain Peripla_BP_4 PF13407.6 gi|383319959|ref|YP_005380800.1| - 0.024 14.2 0.0 0.027 14.0 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein domain Ribosomal_S13 PF00416.22 gi|383319960|ref|YP_005380801.1| - 1.8e-41 141.5 2.2 2.5e-41 141.0 2.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S13/S18 MRI PF15325.6 gi|383319960|ref|YP_005380801.1| - 4.6 8.4 9.6 0.65 11.1 4.9 1.8 2 0 0 2 2 2 0 Modulator of retrovirus infection S4 PF01479.25 gi|383319961|ref|YP_005380802.1| - 1.4e-15 56.7 0.9 2.6e-15 55.9 0.0 1.9 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|383319961|ref|YP_005380802.1| - 1.4e-05 25.9 1.0 2.3e-05 25.2 0.7 1.7 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain EppA_BapA PF07268.11 gi|383319961|ref|YP_005380802.1| - 0.16 11.9 0.0 12 5.9 0.0 2.2 1 1 1 2 2 2 0 Exported protein precursor (EppA/BapA) Ribosomal_S11 PF00411.19 gi|383319962|ref|YP_005380803.1| - 1.4e-46 157.4 6.4 2.4e-46 156.7 6.4 1.3 1 1 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|383319962|ref|YP_005380803.1| - 0.0052 16.5 0.6 0.0064 16.2 0.6 1.2 1 0 0 1 1 1 1 Pilus biogenesis CpaD protein (pilus_cpaD) Ribosomal_L18p PF00861.22 gi|383319962|ref|YP_005380803.1| - 0.015 15.6 0.5 0.021 15.2 0.5 1.2 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RNA_pol_A_bac PF01000.26 gi|383319963|ref|YP_005380804.1| - 9.6e-29 100.0 0.0 2.2e-28 98.9 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|383319963|ref|YP_005380804.1| - 8.7e-18 63.5 0.0 1.1e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.27 gi|383319963|ref|YP_005380804.1| - 9.3e-07 28.4 13.8 3.6e-05 23.4 2.8 3.1 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|383319963|ref|YP_005380804.1| - 1.6e-06 28.2 10.6 1.6e-06 28.2 10.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383319963|ref|YP_005380804.1| - 1.8e-05 25.2 13.3 1.8e-05 25.2 13.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383319963|ref|YP_005380804.1| - 1.9e-05 25.0 7.8 0.012 16.0 3.2 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383319963|ref|YP_005380804.1| - 3.6e-05 24.6 14.4 0.0056 17.6 2.0 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|383319963|ref|YP_005380804.1| - 0.00018 21.5 13.4 0.00018 21.5 13.4 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383319963|ref|YP_005380804.1| - 0.0011 18.9 2.3 0.0011 18.9 2.3 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383319963|ref|YP_005380804.1| - 0.0017 18.4 13.9 0.0017 18.4 13.9 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383319963|ref|YP_005380804.1| - 0.0046 17.0 2.4 0.0046 17.0 2.4 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|383319963|ref|YP_005380804.1| - 0.017 15.3 7.9 0.017 15.3 7.9 1.6 2 0 0 2 2 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383319963|ref|YP_005380804.1| - 0.018 15.5 3.8 0.018 15.5 3.8 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|383319963|ref|YP_005380804.1| - 0.1 13.6 5.2 0.1 13.6 5.2 4.1 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|383319963|ref|YP_005380804.1| - 0.19 12.3 15.6 0.11 13.1 1.6 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383319963|ref|YP_005380804.1| - 0.74 10.4 13.5 4.8 7.8 13.5 2.3 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I MFS_1 PF07690.16 gi|383319964|ref|YP_005380805.1| - 6.3e-42 143.8 42.3 6.3e-42 143.8 42.3 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|383319964|ref|YP_005380805.1| - 6.1e-13 48.4 10.5 6.1e-13 48.4 10.5 3.0 3 0 0 3 3 3 1 Sugar (and other) transporter MFS_2 PF13347.6 gi|383319964|ref|YP_005380805.1| - 7.7e-06 24.7 41.4 5.2e-05 22.0 13.7 3.1 2 1 1 3 3 3 2 MFS/sugar transport protein DUF4926 PF16277.5 gi|383319965|ref|YP_005380806.1| - 0.00055 19.2 0.1 0.0007 18.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4926) ABC2_membrane PF01061.24 gi|383319966|ref|YP_005380807.1| - 1.5e-27 96.4 19.5 1.5e-27 96.4 19.5 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|383319966|ref|YP_005380807.1| - 2.4e-08 33.5 27.9 2.4e-08 33.5 27.9 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|383319967|ref|YP_005380808.1| - 1.1e-30 106.9 0.0 1.7e-30 106.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383319967|ref|YP_005380808.1| - 1.2e-14 54.9 0.1 6.9e-10 39.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|383319967|ref|YP_005380808.1| - 4.4e-07 29.9 0.0 0.0032 17.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|383319967|ref|YP_005380808.1| - 0.0022 17.5 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|383319967|ref|YP_005380808.1| - 0.0023 18.5 0.0 0.0043 17.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|383319967|ref|YP_005380808.1| - 0.081 12.7 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|383319967|ref|YP_005380808.1| - 0.13 12.0 0.0 8.4 6.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AA_kinase PF00696.28 gi|383319968|ref|YP_005380809.1| - 7.1e-51 173.1 0.2 1.7e-50 171.9 0.0 1.7 2 1 0 2 2 2 1 Amino acid kinase family ACT PF01842.25 gi|383319968|ref|YP_005380809.1| - 3.7e-23 81.0 0.9 2.7e-12 46.2 0.0 3.3 3 0 0 3 3 3 2 ACT domain ACT_7 PF13840.6 gi|383319968|ref|YP_005380809.1| - 8.1e-22 76.8 1.8 6.2e-13 48.3 0.0 3.4 3 0 0 3 3 3 2 ACT domain ACT_6 PF13740.6 gi|383319968|ref|YP_005380809.1| - 0.0027 17.7 0.2 0.065 13.2 0.1 2.7 2 0 0 2 2 2 1 ACT domain T2SSE PF00437.20 gi|383319969|ref|YP_005380810.1| - 2.5e-12 46.4 0.0 4.2e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|383319969|ref|YP_005380810.1| - 6.4e-06 26.7 0.0 1.7e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 PIN domain KH_1 PF00013.29 gi|383319969|ref|YP_005380810.1| - 5.8e-05 22.8 0.2 0.0002 21.1 0.2 2.0 1 0 0 1 1 1 1 KH domain PIN_4 PF13638.6 gi|383319969|ref|YP_005380810.1| - 0.00033 20.9 0.1 0.0011 19.3 0.0 1.9 2 0 0 2 2 2 1 PIN domain AAA_16 PF13191.6 gi|383319969|ref|YP_005380810.1| - 0.00082 19.8 0.0 0.0016 18.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|383319969|ref|YP_005380810.1| - 0.0012 18.6 0.0 0.0035 17.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|383319969|ref|YP_005380810.1| - 0.004 16.8 0.0 0.016 14.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|383319969|ref|YP_005380810.1| - 0.0041 17.6 0.0 0.012 16.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|383319969|ref|YP_005380810.1| - 0.0079 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein KH_2 PF07650.17 gi|383319969|ref|YP_005380810.1| - 0.017 14.9 2.1 0.017 14.9 2.1 2.2 3 0 0 3 3 3 0 KH domain PIN_9 PF18477.1 gi|383319969|ref|YP_005380810.1| - 0.023 15.0 0.6 3.6 7.9 0.0 3.1 3 0 0 3 3 3 0 PIN like domain AAA_18 PF13238.6 gi|383319969|ref|YP_005380810.1| - 0.025 15.1 0.0 0.057 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|383319969|ref|YP_005380810.1| - 0.038 13.9 0.0 0.17 11.8 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.6 gi|383319969|ref|YP_005380810.1| - 0.042 14.1 0.0 0.16 12.2 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|383319969|ref|YP_005380810.1| - 0.042 14.3 0.0 0.092 13.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PPV_E1_C PF00519.17 gi|383319969|ref|YP_005380810.1| - 0.055 12.3 0.0 0.083 11.7 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AAA_33 PF13671.6 gi|383319969|ref|YP_005380810.1| - 0.068 13.3 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain KH_4 PF13083.6 gi|383319969|ref|YP_005380810.1| - 0.084 12.8 0.9 0.29 11.1 0.4 2.1 2 0 0 2 2 1 0 KH domain AAA_7 PF12775.7 gi|383319969|ref|YP_005380810.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|383319969|ref|YP_005380810.1| - 0.14 11.8 0.1 0.42 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|383319969|ref|YP_005380810.1| - 0.16 12.4 0.0 0.33 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PRA-CH PF01502.18 gi|383319970|ref|YP_005380811.1| - 2.7e-37 126.5 1.2 3.4e-37 126.1 1.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase FAD-oxidase_C PF02913.19 gi|383319971|ref|YP_005380812.1| - 8.8e-62 209.0 0.0 1.1e-61 208.7 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|383319971|ref|YP_005380812.1| - 1.9e-44 150.7 0.2 3.9e-44 149.8 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain Lact-deh-memb PF09330.11 gi|383319971|ref|YP_005380812.1| - 0.0021 17.4 0.0 0.0032 16.9 0.0 1.2 1 0 0 1 1 1 1 D-lactate dehydrogenase, membrane binding BBE PF08031.12 gi|383319971|ref|YP_005380812.1| - 0.13 12.4 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Berberine and berberine like CCG PF02754.16 gi|383319972|ref|YP_005380813.1| - 1.2e-27 95.9 2.0 1.1e-14 54.4 0.4 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|383319972|ref|YP_005380813.1| - 4.5e-09 36.6 6.8 4.5e-09 36.6 6.8 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383319972|ref|YP_005380813.1| - 1.1e-07 32.3 6.5 1.1e-07 32.3 6.5 2.7 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383319972|ref|YP_005380813.1| - 2.6e-07 31.1 8.4 2.6e-07 31.1 8.4 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383319972|ref|YP_005380813.1| - 3.2e-05 24.8 5.2 3.2e-05 24.8 5.2 2.6 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|383319972|ref|YP_005380813.1| - 4.2e-05 23.6 10.5 4.2e-05 23.6 10.5 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383319972|ref|YP_005380813.1| - 0.00045 20.3 8.4 0.00045 20.3 8.4 3.4 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|383319972|ref|YP_005380813.1| - 0.009 15.8 2.8 0.009 15.8 2.8 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383319972|ref|YP_005380813.1| - 0.014 15.5 15.1 0.098 12.8 0.8 3.7 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|383319972|ref|YP_005380813.1| - 0.53 10.5 7.0 6 7.1 0.4 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain OrfB_IS605 PF01385.19 gi|383319973|ref|YP_005380814.1| - 7.8e-23 81.0 0.2 1.9e-22 79.8 0.2 1.7 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|383319973|ref|YP_005380814.1| - 4.9e-11 42.4 0.0 1.5e-10 40.9 0.0 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lar_N PF09861.9 gi|383319974|ref|YP_005380815.1| - 3.9e-71 238.5 0.0 7.9e-71 237.4 0.0 1.5 1 0 0 1 1 1 1 Lactate racemase N-terminal domain DUF362 PF04015.12 gi|383319974|ref|YP_005380815.1| - 3.4e-05 24.2 0.0 0.0001 22.7 0.0 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF362) Methyltransf_2 PF00891.18 gi|383319974|ref|YP_005380815.1| - 0.14 11.4 0.1 0.23 10.7 0.1 1.3 1 0 0 1 1 1 0 O-methyltransferase domain GDE_N_bis PF14742.6 gi|383319976|ref|YP_005380817.1| - 7.7e-53 178.9 0.0 1.2e-52 178.3 0.0 1.3 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.14 gi|383319976|ref|YP_005380817.1| - 1.5e-13 50.4 0.0 4e-13 49.0 0.0 1.6 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Glyco_hydro_63 PF03200.16 gi|383319976|ref|YP_005380817.1| - 0.0063 15.3 0.0 0.028 13.2 0.0 1.8 1 1 1 2 2 2 1 Glycosyl hydrolase family 63 C-terminal domain Glyco_hydro_36 PF17167.4 gi|383319976|ref|YP_005380817.1| - 0.025 13.3 0.1 0.058 12.1 0.1 1.5 1 1 0 1 1 1 0 Glycosyl hydrolase 36 superfamily, catalytic domain TPR_7 PF13176.6 gi|383319976|ref|YP_005380817.1| - 0.16 12.1 0.2 0.44 10.7 0.2 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat Trehalase PF01204.18 gi|383319976|ref|YP_005380817.1| - 0.21 10.4 0.0 0.32 9.8 0.0 1.2 1 0 0 1 1 1 0 Trehalase DUF4010 PF13194.6 gi|383319978|ref|YP_005380819.1| - 4.9e-56 189.7 25.3 4.9e-56 189.7 25.3 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|383319978|ref|YP_005380819.1| - 1.4e-18 67.4 13.5 1.4e-18 67.4 13.5 3.7 2 1 1 3 3 3 1 MgtC family UBA_3 PF09288.10 gi|383319981|ref|YP_005380822.1| - 0.094 12.5 0.0 2.6 7.9 0.0 2.3 2 0 0 2 2 2 0 Fungal ubiquitin-associated domain SIMPL PF04402.14 gi|383319982|ref|YP_005380823.1| - 5.5e-46 157.6 4.8 6.3e-46 157.4 4.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) AA_permease_2 PF13520.6 gi|383319983|ref|YP_005380824.1| - 1.2e-40 139.6 43.1 1.7e-40 139.2 43.1 1.2 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|383319983|ref|YP_005380824.1| - 3.6e-37 128.0 2.4 4.1e-17 63.0 0.1 3.2 2 1 0 2 2 2 2 Universal stress protein family AA_permease PF00324.21 gi|383319983|ref|YP_005380824.1| - 1.3e-28 99.9 42.7 2.6e-28 98.9 42.7 1.4 1 1 0 1 1 1 1 Amino acid permease ETF PF01012.21 gi|383319983|ref|YP_005380824.1| - 0.12 12.2 2.3 1 9.2 0.1 2.6 3 0 0 3 3 3 0 Electron transfer flavoprotein domain GPHR_N PF12537.8 gi|383319983|ref|YP_005380824.1| - 0.24 11.5 1.1 0.61 10.2 1.1 1.7 1 0 0 1 1 1 0 The Golgi pH Regulator (GPHR) Family N-terminal Usp PF00582.26 gi|383319984|ref|YP_005380825.1| - 6.7e-29 101.2 0.0 6e-15 56.0 0.0 3.4 2 2 0 2 2 2 2 Universal stress protein family ETF PF01012.21 gi|383319984|ref|YP_005380825.1| - 0.094 12.6 0.0 0.58 10.0 0.0 2.0 2 0 0 2 2 2 0 Electron transfer flavoprotein domain DUF2498 PF10692.9 gi|383319984|ref|YP_005380825.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2498) Iso_dh PF00180.20 gi|383319986|ref|YP_005380827.1| - 7.3e-94 314.8 0.0 8.4e-94 314.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.19 gi|383319987|ref|YP_005380828.1| - 7.3e-20 71.6 0.0 8e-19 68.3 0.0 1.9 1 1 1 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|383319987|ref|YP_005380828.1| - 0.00062 19.5 0.1 0.0038 16.9 0.1 1.9 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Aconitase PF00330.20 gi|383319988|ref|YP_005380829.1| - 7.1e-98 328.6 6.9 4.6e-63 213.8 0.2 2.3 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|383319988|ref|YP_005380829.1| - 0.008 14.9 0.0 0.014 14.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) HMGL-like PF00682.19 gi|383319989|ref|YP_005380830.1| - 6.3e-84 281.6 5.1 8.8e-84 281.2 5.1 1.2 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|383319989|ref|YP_005380830.1| - 0.0071 15.8 0.1 0.013 14.9 0.1 1.5 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF561 PF04481.12 gi|383319989|ref|YP_005380830.1| - 0.046 12.9 0.0 0.37 9.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF561) His_biosynth PF00977.21 gi|383319989|ref|YP_005380830.1| - 0.046 13.2 0.0 0.096 12.1 0.0 1.6 1 1 0 1 1 1 0 Histidine biosynthesis protein TPP_enzyme_C PF02775.21 gi|383319990|ref|YP_005380831.1| - 1.1e-08 35.1 0.0 2.9e-08 33.7 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|383319990|ref|YP_005380831.1| - 1.6e-07 31.1 0.1 3.4e-05 23.5 0.1 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR_N PF01855.19 gi|383319990|ref|YP_005380831.1| - 0.02 14.7 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LDcluster4 PF18306.1 gi|383319991|ref|YP_005380832.1| - 0.0046 16.6 0.3 0.038 13.6 0.1 2.3 2 1 0 2 2 2 1 SLOG cluster4 family HTH_3 PF01381.22 gi|383319992|ref|YP_005380833.1| - 8.9e-11 41.7 0.5 1.4e-10 41.1 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|383319992|ref|YP_005380833.1| - 0.00012 22.0 0.4 0.00019 21.4 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|383319992|ref|YP_005380833.1| - 0.00026 21.3 0.0 0.00061 20.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|383319992|ref|YP_005380833.1| - 0.086 12.9 0.4 0.13 12.3 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon MqsA_antitoxin PF15731.5 gi|383319992|ref|YP_005380833.1| - 0.68 10.0 2.9 6.2 6.9 2.9 2.3 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA AAA PF00004.29 gi|383319993|ref|YP_005380834.1| - 1.3e-44 151.8 0.0 3.1e-44 150.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|383319993|ref|YP_005380834.1| - 7.7e-13 48.0 0.2 1.7e-12 47.0 0.2 1.6 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|383319993|ref|YP_005380834.1| - 1.1e-10 41.3 0.0 2.2e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_5 PF07728.14 gi|383319993|ref|YP_005380834.1| - 4.3e-08 33.3 0.1 2.3e-07 30.9 0.0 2.3 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|383319993|ref|YP_005380834.1| - 8e-08 32.8 0.3 7.2e-05 23.2 0.0 3.1 2 1 0 3 3 3 1 AAA ATPase domain AAA_2 PF07724.14 gi|383319993|ref|YP_005380834.1| - 7.7e-07 29.4 0.1 3.1e-06 27.4 0.0 2.0 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|383319993|ref|YP_005380834.1| - 1.1e-05 25.2 0.0 3.7e-05 23.5 0.0 1.8 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain Prot_ATP_OB_N PF17758.1 gi|383319993|ref|YP_005380834.1| - 4.3e-05 23.1 0.0 0.00036 20.1 0.0 2.5 2 0 0 2 2 2 1 Proteasomal ATPase OB N-terminal domain DUF815 PF05673.13 gi|383319993|ref|YP_005380834.1| - 7.8e-05 22.0 0.0 0.00016 21.0 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|383319993|ref|YP_005380834.1| - 8.7e-05 22.8 0.3 0.009 16.3 0.1 2.4 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|383319993|ref|YP_005380834.1| - 0.002 18.2 0.0 0.0049 16.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|383319993|ref|YP_005380834.1| - 0.0023 17.2 0.0 0.0051 16.1 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|383319993|ref|YP_005380834.1| - 0.0023 17.7 0.0 0.0058 16.4 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_3 PF07726.11 gi|383319993|ref|YP_005380834.1| - 0.0029 17.4 0.1 0.014 15.3 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Filament PF00038.21 gi|383319993|ref|YP_005380834.1| - 0.0053 16.4 3.3 0.011 15.3 3.3 1.5 1 0 0 1 1 1 1 Intermediate filament protein NTPase_1 PF03266.15 gi|383319993|ref|YP_005380834.1| - 0.0091 15.9 0.4 0.1 12.5 0.0 2.6 2 0 0 2 2 2 1 NTPase AAA_24 PF13479.6 gi|383319993|ref|YP_005380834.1| - 0.0093 15.7 0.1 0.024 14.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|383319993|ref|YP_005380834.1| - 0.011 15.9 0.0 0.031 14.4 0.0 1.8 2 0 0 2 2 1 0 AAA domain Sigma54_activat PF00158.26 gi|383319993|ref|YP_005380834.1| - 0.011 15.5 0.1 0.11 12.1 0.1 2.5 1 1 0 1 1 1 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|383319993|ref|YP_005380834.1| - 0.011 15.1 1.9 0.02 14.3 0.1 2.2 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|383319993|ref|YP_005380834.1| - 0.012 16.0 0.0 0.042 14.3 0.0 1.9 2 0 0 2 2 2 0 RNA helicase Parvo_NS1 PF01057.17 gi|383319993|ref|YP_005380834.1| - 0.018 14.2 0.0 0.058 12.5 0.0 1.8 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_28 PF13521.6 gi|383319993|ref|YP_005380834.1| - 0.025 14.8 0.6 0.047 13.9 0.0 1.8 2 0 0 2 2 1 0 AAA domain ATPase PF06745.13 gi|383319993|ref|YP_005380834.1| - 0.027 13.8 2.6 0.11 11.8 0.0 2.5 2 1 0 3 3 3 0 KaiC AAA_30 PF13604.6 gi|383319993|ref|YP_005380834.1| - 0.028 14.1 0.6 0.08 12.7 0.1 2.1 2 1 0 2 2 1 0 AAA domain KASH_CCD PF14662.6 gi|383319993|ref|YP_005380834.1| - 0.028 14.2 1.8 0.028 14.2 1.8 1.8 2 0 0 2 2 1 0 Coiled-coil region of CCDC155 or KASH AAA_18 PF13238.6 gi|383319993|ref|YP_005380834.1| - 0.035 14.7 0.0 0.035 14.7 0.0 2.2 2 1 0 2 2 1 0 AAA domain AAA_7 PF12775.7 gi|383319993|ref|YP_005380834.1| - 0.036 13.6 0.0 0.07 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|383319993|ref|YP_005380834.1| - 0.042 14.0 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|383319993|ref|YP_005380834.1| - 0.045 13.0 0.0 0.09 12.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin PhoH PF02562.16 gi|383319993|ref|YP_005380834.1| - 0.061 12.8 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein TsaE PF02367.17 gi|383319993|ref|YP_005380834.1| - 0.077 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 gi|383319993|ref|YP_005380834.1| - 0.078 12.9 1.9 1.7 8.5 0.0 2.7 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|383319993|ref|YP_005380834.1| - 0.079 12.5 0.4 0.25 10.9 0.1 1.9 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|383319993|ref|YP_005380834.1| - 0.096 12.5 1.7 0.75 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|383319993|ref|YP_005380834.1| - 0.18 11.7 0.2 0.54 10.2 0.1 1.8 2 0 0 2 2 2 0 NACHT domain PPV_E1_C PF00519.17 gi|383319993|ref|YP_005380834.1| - 0.2 10.5 0.1 15 4.3 0.0 2.1 2 0 0 2 2 2 0 Papillomavirus helicase Mto2_bdg PF12808.7 gi|383319993|ref|YP_005380834.1| - 2.5 8.5 7.9 6 7.3 7.9 1.7 1 0 0 1 1 1 0 Micro-tubular organiser Mto1 C-term Mto2-binding region ZapB PF06005.12 gi|383319993|ref|YP_005380834.1| - 8.9 6.8 12.0 3.6 8.1 7.5 2.6 3 0 0 3 3 2 0 Cell division protein ZapB DUF356 PF04009.12 gi|383319994|ref|YP_005380835.1| - 4.3e-39 133.0 0.3 4.9e-39 132.9 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) Sua5_yciO_yrdC PF01300.18 gi|383319995|ref|YP_005380836.1| - 9.1e-47 158.9 0.0 1e-46 158.7 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Peptidase_M24 PF00557.24 gi|383319996|ref|YP_005380837.1| - 5e-38 130.9 0.0 5.6e-38 130.7 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 ApbE PF02424.15 gi|383319996|ref|YP_005380837.1| - 0.019 14.5 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 ApbE family Ectoine_synth PF06339.12 gi|383319996|ref|YP_005380837.1| - 0.13 12.5 0.1 0.97 9.6 0.1 2.0 1 1 1 2 2 2 0 Ectoine synthase NTP_transf_2 PF01909.23 gi|383319997|ref|YP_005380838.1| - 0.0025 18.1 0.2 0.0058 16.9 0.0 1.8 2 0 0 2 2 2 1 Nucleotidyltransferase domain DUF368 PF04018.13 gi|383319998|ref|YP_005380839.1| - 0.011 15.3 1.2 0.013 15.1 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF368) AAA PF00004.29 gi|383319999|ref|YP_005380840.1| - 3.6e-11 43.6 0.0 7.1e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|383319999|ref|YP_005380840.1| - 8.3e-05 22.6 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|383319999|ref|YP_005380840.1| - 0.0003 20.5 0.0 0.00057 19.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|383319999|ref|YP_005380840.1| - 0.00053 20.3 0.1 1.4 9.2 0.1 2.7 1 1 1 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|383319999|ref|YP_005380840.1| - 0.0014 18.7 0.0 0.0042 17.1 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|383319999|ref|YP_005380840.1| - 0.0018 18.7 1.0 0.022 15.2 0.0 3.0 3 1 0 3 3 3 1 AAA ATPase domain DUF815 PF05673.13 gi|383319999|ref|YP_005380840.1| - 0.0026 17.0 0.0 0.0044 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|383319999|ref|YP_005380840.1| - 0.0077 15.5 0.1 0.014 14.6 0.0 1.5 2 0 0 2 2 2 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|383319999|ref|YP_005380840.1| - 0.0089 15.8 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|383319999|ref|YP_005380840.1| - 0.01 15.4 0.0 0.031 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|383319999|ref|YP_005380840.1| - 0.022 14.8 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|383319999|ref|YP_005380840.1| - 0.031 14.5 0.0 0.077 13.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|383319999|ref|YP_005380840.1| - 0.033 13.5 0.1 0.073 12.4 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|383319999|ref|YP_005380840.1| - 0.076 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|383319999|ref|YP_005380840.1| - 0.077 12.7 0.2 0.18 11.5 0.2 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|383319999|ref|YP_005380840.1| - 0.1 13.0 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_17 PF13207.6 gi|383319999|ref|YP_005380840.1| - 0.11 13.0 0.0 0.38 11.2 0.0 2.0 2 0 0 2 2 1 0 AAA domain AAA_6 PF12774.7 gi|383319999|ref|YP_005380840.1| - 0.13 11.2 0.1 1.9 7.4 0.1 2.1 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region Bac_DnaA PF00308.18 gi|383319999|ref|YP_005380840.1| - 0.17 11.7 0.1 1.3 8.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein NACHT PF05729.12 gi|383319999|ref|YP_005380840.1| - 0.18 11.7 0.1 4 7.3 0.0 2.4 2 1 0 2 2 2 0 NACHT domain Sigma54_activ_2 PF14532.6 gi|383319999|ref|YP_005380840.1| - 0.2 11.7 0.0 0.37 10.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain PsiE PF06146.12 gi|383320000|ref|YP_005380841.1| - 5.4e-10 39.5 11.3 5.4e-10 39.5 11.3 1.7 2 0 0 2 2 2 1 Phosphate-starvation-inducible E TssN PF17555.2 gi|383320000|ref|YP_005380841.1| - 1.3 8.3 11.5 1.8 7.9 11.5 1.2 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF2070 PF09843.9 gi|383320000|ref|YP_005380841.1| - 6.2 5.0 14.6 7.9 4.6 14.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) PseudoU_synth_1 PF01416.20 gi|383320001|ref|YP_005380842.1| - 7.2e-32 110.1 0.0 6.1e-25 87.8 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase HATPase_c PF02518.26 gi|383320002|ref|YP_005380843.1| - 1e-18 67.9 0.0 2.2e-18 66.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|383320002|ref|YP_005380843.1| - 3.2e-08 33.8 0.0 1.2e-07 31.9 0.0 2.0 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|383320002|ref|YP_005380843.1| - 0.00012 22.3 0.1 0.00058 20.1 0.1 2.2 1 1 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|383320002|ref|YP_005380843.1| - 0.00017 21.5 0.0 0.00041 20.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|383320002|ref|YP_005380843.1| - 0.0012 18.8 0.0 0.0026 17.6 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.7 gi|383320002|ref|YP_005380843.1| - 0.0031 17.6 0.1 1.1 9.5 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|383320002|ref|YP_005380843.1| - 0.01 15.9 0.1 0.098 12.7 0.1 2.2 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|383320002|ref|YP_005380843.1| - 0.018 15.0 0.0 0.048 13.7 0.0 1.7 1 0 0 1 1 1 0 PAS domain Pput2613-deam PF14427.6 gi|383320002|ref|YP_005380843.1| - 0.13 12.1 0.1 0.32 10.9 0.1 1.6 1 0 0 1 1 1 0 Pput_2613-like deaminase ABC2_membrane_2 PF12679.7 gi|383320003|ref|YP_005380844.1| - 1.9e-19 70.1 24.6 2.8e-19 69.5 24.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383320003|ref|YP_005380844.1| - 2.9e-06 26.7 23.9 2.9e-06 26.7 23.9 1.9 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383320003|ref|YP_005380844.1| - 0.0002 21.0 20.4 0.0002 21.0 20.4 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383320003|ref|YP_005380844.1| - 0.00067 19.7 14.3 0.00067 19.7 14.3 2.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|383320004|ref|YP_005380845.1| - 2.2e-25 89.7 0.0 5e-25 88.6 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320004|ref|YP_005380845.1| - 1e-14 55.1 0.0 2.4e-10 40.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|383320004|ref|YP_005380845.1| - 5.5e-06 27.0 0.1 9.7e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|383320004|ref|YP_005380845.1| - 8.4e-05 22.4 0.2 0.14 11.8 0.1 2.5 3 0 0 3 3 3 2 AAA ATPase domain HMA PF00403.26 gi|383320004|ref|YP_005380845.1| - 0.00086 19.7 0.0 0.09 13.2 0.0 2.6 2 0 0 2 2 2 1 Heavy-metal-associated domain AAA_23 PF13476.6 gi|383320004|ref|YP_005380845.1| - 0.0071 16.9 1.9 0.0071 16.9 1.9 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|383320004|ref|YP_005380845.1| - 0.015 15.0 0.1 0.028 14.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|383320004|ref|YP_005380845.1| - 0.034 13.7 0.0 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|383320004|ref|YP_005380845.1| - 0.072 12.5 0.7 5.5 6.4 0.2 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain GTP_CH_N PF12471.8 gi|383320004|ref|YP_005380845.1| - 0.12 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 GTP cyclohydrolase N terminal PfkB PF00294.24 gi|383320005|ref|YP_005380846.1| - 2e-35 122.6 0.2 7.5e-35 120.7 0.2 1.7 1 1 0 1 1 1 1 pfkB family carbohydrate kinase CarboxypepD_reg PF13620.6 gi|383320006|ref|YP_005380847.1| - 1.8e-07 31.3 4.6 3.8e-07 30.3 0.7 2.9 2 1 0 3 3 3 1 Carboxypeptidase regulatory-like domain DUF2012 PF09430.10 gi|383320006|ref|YP_005380847.1| - 0.0047 17.0 0.0 0.007 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2012) fn3_3 PF14686.6 gi|383320006|ref|YP_005380847.1| - 0.026 14.3 0.5 0.06 13.1 0.5 1.7 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain II SdrD_B PF17210.3 gi|383320006|ref|YP_005380847.1| - 0.056 13.7 0.4 0.1 12.9 0.4 1.4 1 0 0 1 1 1 0 SdrD B-like domain ABC_tran PF00005.27 gi|383320007|ref|YP_005380848.1| - 1.1e-29 103.7 0.0 1.7e-29 103.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320007|ref|YP_005380848.1| - 1.1e-10 41.8 1.5 6.4e-08 32.8 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|383320007|ref|YP_005380848.1| - 2.1e-07 31.6 0.0 6.9e-07 29.9 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|383320007|ref|YP_005380848.1| - 0.022 14.5 0.0 0.5 10.0 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain SMC_N PF02463.19 gi|383320007|ref|YP_005380848.1| - 0.023 14.2 0.0 3.7 6.9 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|383320007|ref|YP_005380848.1| - 0.031 14.4 0.0 0.15 12.1 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|383320007|ref|YP_005380848.1| - 0.087 12.6 0.2 0.17 11.6 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|383320007|ref|YP_005380848.1| - 0.11 13.0 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 gi|383320008|ref|YP_005380849.1| - 2.2e-34 119.1 21.5 2.6e-34 118.8 21.5 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383320008|ref|YP_005380849.1| - 1.9e-11 44.2 17.4 1.9e-11 44.2 17.4 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383320008|ref|YP_005380849.1| - 4e-07 29.8 17.5 4e-07 29.8 17.5 2.3 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383320008|ref|YP_005380849.1| - 1.5e-05 24.3 29.9 1.5e-05 24.3 29.9 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein MFS_1 PF07690.16 gi|383320009|ref|YP_005380850.1| - 5.8e-35 120.8 58.7 3.3e-29 101.9 33.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|383320009|ref|YP_005380850.1| - 3.5e-10 39.3 29.2 1.3e-05 24.3 8.8 2.2 1 1 1 2 2 2 2 MFS_1 like family MFS_2 PF13347.6 gi|383320009|ref|YP_005380850.1| - 6.5e-10 38.1 37.8 6.4e-08 31.6 22.2 2.5 1 1 1 2 2 2 2 MFS/sugar transport protein UNC-93 PF05978.16 gi|383320009|ref|YP_005380850.1| - 5e-06 26.3 2.7 5e-06 26.3 2.7 3.2 2 1 1 3 3 3 1 Ion channel regulatory protein UNC-93 ABC_tran PF00005.27 gi|383320010|ref|YP_005380851.1| - 1.4e-17 64.5 0.0 2.2e-17 63.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320010|ref|YP_005380851.1| - 7.4e-07 29.3 0.4 0.00017 21.5 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|383320010|ref|YP_005380851.1| - 0.0011 18.8 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|383320010|ref|YP_005380851.1| - 0.0028 17.3 0.0 0.0042 16.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF5590 PF17881.1 gi|383320010|ref|YP_005380851.1| - 0.013 15.6 0.0 0.022 14.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5590) SMC_N PF02463.19 gi|383320010|ref|YP_005380851.1| - 0.013 15.0 0.9 0.54 9.6 0.9 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|383320010|ref|YP_005380851.1| - 0.018 15.6 0.0 0.029 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|383320010|ref|YP_005380851.1| - 0.02 14.6 0.0 0.043 13.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|383320010|ref|YP_005380851.1| - 0.068 13.4 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|383320010|ref|YP_005380851.1| - 0.082 12.6 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain TRAM PF01938.20 gi|383320011|ref|YP_005380852.1| - 2.1e-16 59.6 2.7 2.4e-16 59.5 2.7 1.1 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|383320011|ref|YP_005380852.1| - 0.013 15.2 0.1 0.03 14.1 0.1 1.8 1 1 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) S1 PF00575.23 gi|383320011|ref|YP_005380852.1| - 0.12 12.7 3.0 4.7 7.6 0.1 2.4 2 1 0 2 2 2 0 S1 RNA binding domain UPF0113 PF03657.13 gi|383320012|ref|YP_005380853.1| - 2.9e-21 75.5 0.1 4e-21 75.1 0.1 1.2 1 0 0 1 1 1 1 UPF0113 PUA domain PUA PF01472.20 gi|383320012|ref|YP_005380853.1| - 9.3e-06 25.5 0.1 1.4e-05 24.9 0.1 1.3 1 0 0 1 1 1 1 PUA domain UPF0113_N PF17833.1 gi|383320012|ref|YP_005380853.1| - 0.0033 17.9 0.0 0.0055 17.2 0.0 1.3 1 0 0 1 1 1 1 UPF0113 Pre-PUA domain Methyltr_RsmB-F PF01189.17 gi|383320013|ref|YP_005380854.1| - 1.2e-56 191.5 0.0 1.6e-56 191.2 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|383320013|ref|YP_005380854.1| - 7.7e-10 39.1 0.0 2.5e-09 37.5 0.0 1.9 3 0 0 3 3 3 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|383320013|ref|YP_005380854.1| - 0.00054 20.1 0.0 0.00087 19.4 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Met_10 PF02475.16 gi|383320013|ref|YP_005380854.1| - 0.00058 19.7 0.0 0.00089 19.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|383320013|ref|YP_005380854.1| - 0.00081 19.2 0.0 0.0011 18.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain POR PF01558.18 gi|383320013|ref|YP_005380854.1| - 0.0016 18.5 0.0 0.0034 17.5 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Methyltransf_25 PF13649.6 gi|383320013|ref|YP_005380854.1| - 0.004 17.8 0.1 0.052 14.3 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain DUF2431 PF10354.9 gi|383320013|ref|YP_005380854.1| - 0.02 15.1 0.0 0.034 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) Nif11 PF07862.11 gi|383320013|ref|YP_005380854.1| - 0.12 12.7 0.0 19 5.7 0.0 2.5 2 0 0 2 2 2 0 Nif11 domain GCD14 PF08704.10 gi|383320013|ref|YP_005380854.1| - 0.16 11.7 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit RibD_C PF01872.17 gi|383320014|ref|YP_005380855.1| - 2.5e-58 197.2 0.3 2.8e-58 197.1 0.3 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Hydrolase PF00702.26 gi|383320014|ref|YP_005380855.1| - 0.0092 16.3 0.7 0.31 11.3 0.5 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Gemini_mov PF01708.16 gi|383320015|ref|YP_005380856.1| - 0.095 12.5 0.5 0.095 12.5 0.5 2.1 3 0 0 3 3 3 0 Geminivirus putative movement protein Pam17 PF08566.10 gi|383320015|ref|YP_005380856.1| - 1.6 8.6 5.7 0.98 9.3 1.8 2.0 1 1 1 2 2 2 0 Mitochondrial import protein Pam17 DNA_pol_B PF00136.21 gi|383320016|ref|YP_005380857.1| - 9.2e-59 199.3 0.0 1.3e-58 198.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|383320016|ref|YP_005380857.1| - 4.8e-20 72.0 0.2 8.4e-20 71.2 0.2 1.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_2 PF03175.13 gi|383320016|ref|YP_005380857.1| - 0.0033 16.3 0.6 0.6 8.9 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase type B, organellar and viral DNA_pol_B_exo2 PF10108.9 gi|383320016|ref|YP_005380857.1| - 0.0037 17.0 0.0 0.019 14.6 0.0 2.0 2 0 0 2 2 2 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB MazG-like PF12643.7 gi|383320018|ref|YP_005380859.1| - 0.015 15.6 0.3 0.022 15.0 0.3 1.3 1 0 0 1 1 1 0 MazG-like family PRA-PH PF01503.17 gi|383320018|ref|YP_005380859.1| - 0.026 14.9 1.2 0.041 14.3 1.2 1.4 1 1 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase DUF2281 PF10047.9 gi|383320018|ref|YP_005380859.1| - 0.034 14.9 0.2 0.056 14.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2281) MazG PF03819.17 gi|383320018|ref|YP_005380859.1| - 0.067 13.4 1.6 0.11 12.6 1.6 1.4 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain Histone_HNS PF00816.21 gi|383320018|ref|YP_005380859.1| - 0.086 13.7 0.6 0.13 13.1 0.6 1.4 1 0 0 1 1 1 0 H-NS histone family NOB1_Zn_bind PF08772.11 gi|383320019|ref|YP_005380860.1| - 7.6e-05 22.8 3.4 0.013 15.6 0.4 2.3 2 0 0 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like zf-ISL3 PF14690.6 gi|383320019|ref|YP_005380860.1| - 0.00016 22.3 6.2 0.14 12.8 0.0 2.7 3 0 0 3 3 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HypA PF01155.19 gi|383320019|ref|YP_005380860.1| - 0.00084 19.3 6.6 0.094 12.7 1.8 2.2 2 0 0 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|383320019|ref|YP_005380860.1| - 0.0013 18.2 13.7 0.34 10.5 0.7 3.3 3 0 0 3 3 3 2 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|383320019|ref|YP_005380860.1| - 0.0053 16.4 8.9 0.63 9.8 1.7 3.0 2 0 0 2 2 2 2 zinc-ribbon domain zf-RING_7 PF02591.15 gi|383320019|ref|YP_005380860.1| - 0.015 15.5 1.5 4.3 7.6 0.1 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain DZR PF12773.7 gi|383320019|ref|YP_005380860.1| - 0.018 15.0 11.9 0.11 12.5 10.7 2.4 1 1 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.7 gi|383320019|ref|YP_005380860.1| - 0.022 15.1 9.6 1.3 9.5 0.0 3.5 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zinc-ribbons_6 PF07191.12 gi|383320019|ref|YP_005380860.1| - 0.062 13.3 8.8 1.6 8.8 7.0 2.5 1 1 1 2 2 2 0 zinc-ribbons Mu-like_Com PF10122.9 gi|383320019|ref|YP_005380860.1| - 0.1 12.1 1.8 1.6 8.3 0.2 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com Zn-ribbon_8 PF09723.10 gi|383320019|ref|YP_005380860.1| - 0.13 12.4 14.4 2.5 8.3 6.4 3.0 2 2 0 2 2 2 0 Zinc ribbon domain FYDLN_acid PF09538.10 gi|383320019|ref|YP_005380860.1| - 0.16 12.7 4.2 2.3 8.9 1.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) Cys_rich_CPXG PF14255.6 gi|383320019|ref|YP_005380860.1| - 0.26 11.2 10.2 3 7.8 0.1 3.4 3 0 0 3 3 3 0 Cysteine-rich CPXCG DUF35_N PF12172.8 gi|383320019|ref|YP_005380860.1| - 0.29 11.0 3.9 5.7 6.9 0.8 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF4428 PF14471.6 gi|383320019|ref|YP_005380860.1| - 0.54 10.2 6.6 15 5.6 0.1 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4428) zinc_ribbon_9 PF14369.6 gi|383320019|ref|YP_005380860.1| - 0.71 10.2 9.1 2.6 8.4 0.2 3.2 2 1 0 2 2 2 0 zinc-ribbon zf-NADH-PPase PF09297.11 gi|383320019|ref|YP_005380860.1| - 0.77 9.5 6.1 2.5 7.9 0.1 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|383320019|ref|YP_005380860.1| - 0.89 9.9 8.5 12 6.2 0.0 3.7 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase Ogr_Delta PF04606.12 gi|383320019|ref|YP_005380860.1| - 0.97 9.5 0.1 0.97 9.5 0.1 3.5 4 0 0 4 4 4 0 Ogr/Delta-like zinc finger Zn_ribbon_SprT PF17283.2 gi|383320019|ref|YP_005380860.1| - 0.97 9.4 12.0 12 5.8 7.2 3.1 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zf-C2HC_2 PF13913.6 gi|383320019|ref|YP_005380860.1| - 1.5 8.8 10.9 12 6.0 0.1 3.9 3 0 0 3 3 3 0 zinc-finger of a C2HC-type FYVE PF01363.21 gi|383320019|ref|YP_005380860.1| - 1.6 9.0 10.3 0.068 13.3 2.4 2.4 2 1 0 2 2 2 0 FYVE zinc finger Zn_Tnp_IS1595 PF12760.7 gi|383320019|ref|YP_005380860.1| - 1.8 8.6 16.2 1.6 8.8 0.5 3.6 1 1 2 3 3 3 0 Transposase zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|383320019|ref|YP_005380860.1| - 2.3 8.3 8.3 11 6.2 0.1 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-Di19 PF05605.12 gi|383320019|ref|YP_005380860.1| - 2.3 8.6 12.2 23 5.4 1.8 3.8 1 1 2 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding zf-LITAF-like PF10601.9 gi|383320019|ref|YP_005380860.1| - 2.8 8.3 9.4 3.2 8.1 0.2 3.2 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|383320019|ref|YP_005380860.1| - 3.8 7.0 22.0 0.44 10.0 0.3 3.9 4 2 0 4 4 4 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|383320019|ref|YP_005380860.1| - 4.8 7.8 18.1 7.9 7.1 0.7 4.4 4 0 0 4 4 4 0 Zinc-finger double domain NAD_kinase PF01513.21 gi|383320020|ref|YP_005380861.1| - 3.9e-56 190.4 0.1 4.6e-56 190.2 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|383320020|ref|YP_005380861.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain TrpP PF17099.5 gi|383320020|ref|YP_005380861.1| - 0.08 12.7 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Tryptophan transporter TrpP MTD PF01993.18 gi|383320021|ref|YP_005380862.1| - 2.4e-125 417.4 0.7 2.7e-125 417.2 0.7 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase ANTAR PF03861.14 gi|383320021|ref|YP_005380862.1| - 0.098 12.5 0.2 0.21 11.4 0.2 1.5 1 0 0 1 1 1 0 ANTAR domain PFK PF00365.20 gi|383320022|ref|YP_005380863.1| - 2.9e-100 335.3 2.8 3.4e-100 335.0 2.8 1.0 1 0 0 1 1 1 1 Phosphofructokinase NAD_kinase PF01513.21 gi|383320022|ref|YP_005380863.1| - 2.9e-05 23.4 1.5 0.00024 20.4 0.3 2.2 1 1 1 2 2 2 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|383320022|ref|YP_005380863.1| - 0.0085 15.7 0.5 0.0085 15.7 0.5 2.0 2 1 0 2 2 2 1 Diacylglycerol kinase catalytic domain NifU_N PF01592.16 gi|383320023|ref|YP_005380864.1| - 5.6e-47 159.1 0.1 6.5e-47 158.9 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain TSCPD PF12637.7 gi|383320023|ref|YP_005380864.1| - 0.0041 17.3 0.3 0.0093 16.2 0.2 1.6 2 0 0 2 2 2 1 TSCPD domain DUF1858 PF08984.11 gi|383320023|ref|YP_005380864.1| - 0.0067 16.6 0.9 0.14 12.4 0.9 2.7 1 1 1 2 2 2 1 Domain of unknown function (DUF1858) Aminotran_5 PF00266.19 gi|383320024|ref|YP_005380865.1| - 2.5e-89 299.9 0.1 3e-89 299.6 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|383320024|ref|YP_005380865.1| - 2.8e-09 36.8 0.5 3.8e-09 36.3 0.5 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|383320024|ref|YP_005380865.1| - 8.3e-09 35.1 0.2 1.1e-08 34.8 0.2 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|383320024|ref|YP_005380865.1| - 0.00055 18.6 0.1 0.0011 17.6 0.0 1.4 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Dynamitin PF04912.14 gi|383320024|ref|YP_005380865.1| - 0.1 11.9 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Dynamitin tRNA-Thr_ED PF08915.11 gi|383320025|ref|YP_005380866.1| - 2.8e-47 160.2 0.3 3.3e-47 160.0 0.3 1.1 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase Abhydrolase_1 PF00561.20 gi|383320026|ref|YP_005380867.1| - 1e-35 123.6 0.1 1.5e-35 123.1 0.1 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold CBS PF00571.28 gi|383320026|ref|YP_005380867.1| - 4.3e-23 81.5 1.5 1e-10 41.9 0.0 2.9 3 0 0 3 3 3 2 CBS domain Hydrolase_4 PF12146.8 gi|383320026|ref|YP_005380867.1| - 0.00011 21.5 0.0 0.0013 18.1 0.0 2.1 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|383320026|ref|YP_005380867.1| - 0.00076 20.1 0.0 0.0015 19.1 0.0 1.5 2 0 0 2 2 2 1 Alpha/beta hydrolase family Phage_fiber_2 PF03406.13 gi|383320026|ref|YP_005380867.1| - 0.14 11.8 0.0 0.39 10.3 0.0 1.8 1 0 0 1 1 1 0 Phage tail fibre repeat Esterase PF00756.20 gi|383320026|ref|YP_005380867.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Cys_Met_Meta_PP PF01053.20 gi|383320027|ref|YP_005380868.1| - 1.5e-138 461.5 0.0 1.7e-138 461.3 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|383320027|ref|YP_005380868.1| - 5.4e-11 42.4 0.1 9.2e-11 41.6 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|383320027|ref|YP_005380868.1| - 3.6e-05 23.1 0.0 5.1e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|383320027|ref|YP_005380868.1| - 6.3e-05 22.1 0.0 9.3e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|383320027|ref|YP_005380868.1| - 0.014 14.7 0.0 0.045 13.0 0.0 1.8 1 1 0 1 1 1 0 Beta-eliminating lyase Asparaginase_C PF17763.1 gi|383320027|ref|YP_005380868.1| - 0.033 14.4 0.0 0.09 13.0 0.0 1.7 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain SepSecS PF05889.13 gi|383320028|ref|YP_005380869.1| - 4.4e-22 78.3 0.0 6.8e-22 77.7 0.0 1.2 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|383320028|ref|YP_005380869.1| - 1e-19 70.8 0.0 1.4e-19 70.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|383320028|ref|YP_005380869.1| - 5.6e-06 25.9 0.1 1.3e-05 24.7 0.1 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|383320028|ref|YP_005380869.1| - 7.7e-06 24.7 0.0 1e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|383320028|ref|YP_005380869.1| - 0.0021 16.8 0.0 0.0039 16.0 0.0 1.4 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Beta_elim_lyase PF01212.21 gi|383320028|ref|YP_005380869.1| - 0.0067 15.8 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Skp1 PF01466.19 gi|383320028|ref|YP_005380869.1| - 0.12 12.5 0.5 4.8 7.4 0.0 2.6 2 0 0 2 2 2 0 Skp1 family, dimerisation domain HTH_3 PF01381.22 gi|383320029|ref|YP_005380870.1| - 5.8e-07 29.5 0.3 1.2e-06 28.4 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|383320029|ref|YP_005380870.1| - 0.00016 21.1 0.1 0.00074 19.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 gi|383320029|ref|YP_005380870.1| - 0.00035 20.4 0.1 0.00063 19.6 0.1 1.5 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 gi|383320029|ref|YP_005380870.1| - 0.00057 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HNF-1_N PF04814.13 gi|383320029|ref|YP_005380870.1| - 0.0059 17.2 0.1 0.0079 16.8 0.1 1.2 1 0 0 1 1 1 1 Hepatocyte nuclear factor 1 (HNF-1), N terminus HTH_37 PF13744.6 gi|383320029|ref|YP_005380870.1| - 0.0078 16.1 0.1 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain P22_Cro PF14549.6 gi|383320029|ref|YP_005380870.1| - 0.0082 16.0 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 DNA-binding transcriptional regulator Cro HTH_28 PF13518.6 gi|383320029|ref|YP_005380870.1| - 0.0096 16.0 0.0 0.017 15.2 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|383320029|ref|YP_005380870.1| - 0.013 15.5 0.1 0.02 14.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|383320029|ref|YP_005380870.1| - 0.029 14.3 0.5 0.17 11.9 0.1 2.2 2 1 1 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_31 PF13560.6 gi|383320029|ref|YP_005380870.1| - 0.031 14.6 0.0 0.048 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain JHD PF17811.1 gi|383320029|ref|YP_005380870.1| - 0.039 14.5 0.0 0.062 13.8 0.0 1.2 1 0 0 1 1 1 0 Jumonji helical domain Sigma70_r4 PF04545.16 gi|383320029|ref|YP_005380870.1| - 0.044 13.3 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Sar8_2 PF03058.14 gi|383320029|ref|YP_005380870.1| - 0.057 14.0 1.5 0.11 13.1 1.5 1.5 1 1 0 1 1 1 0 Sar8.2 family HTH_Crp_2 PF13545.6 gi|383320029|ref|YP_005380870.1| - 0.088 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|383320029|ref|YP_005380870.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_Tnp_1 PF01527.20 gi|383320029|ref|YP_005380870.1| - 0.12 12.8 0.1 0.17 12.2 0.1 1.2 1 0 0 1 1 1 0 Transposase HTH_5 PF01022.20 gi|383320029|ref|YP_005380870.1| - 0.24 11.3 1.3 1 9.3 0.1 2.6 3 1 1 4 4 4 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.12 gi|383320029|ref|YP_005380870.1| - 0.54 10.1 1.7 0.99 9.3 0.0 2.1 3 0 0 3 3 2 0 HTH DNA binding domain Na_H_Exchanger PF00999.21 gi|383320030|ref|YP_005380871.1| - 3.2e-54 184.2 41.2 3.8e-54 184.0 41.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family YrhC PF14143.6 gi|383320030|ref|YP_005380871.1| - 0.024 14.7 4.6 0.024 14.7 4.6 3.6 3 1 1 4 4 4 0 YrhC-like protein NAD_synthase PF02540.17 gi|383320031|ref|YP_005380872.1| - 1.5e-07 30.8 0.1 4e-07 29.4 0.1 1.6 2 0 0 2 2 2 1 NAD synthase ATP_bind_3 PF01171.20 gi|383320031|ref|YP_005380872.1| - 4e-06 26.7 0.0 5.9e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|383320031|ref|YP_005380872.1| - 0.00022 20.8 0.0 0.0012 18.4 0.0 2.1 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|383320031|ref|YP_005380872.1| - 0.00022 20.2 0.1 0.0026 16.6 0.1 2.5 2 1 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|383320031|ref|YP_005380872.1| - 0.00047 19.9 0.0 0.0007 19.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase Arginosuc_synth PF00764.19 gi|383320031|ref|YP_005380872.1| - 0.0075 15.6 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Arginosuccinate synthase ThiI PF02568.14 gi|383320032|ref|YP_005380873.1| - 1.6e-58 197.6 0.0 2.2e-58 197.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|383320032|ref|YP_005380873.1| - 9e-16 58.3 0.1 1.7e-15 57.4 0.1 1.5 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|383320032|ref|YP_005380873.1| - 5e-06 26.2 0.0 0.0017 17.9 0.0 2.6 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|383320032|ref|YP_005380873.1| - 0.00056 18.8 0.0 0.001 18.0 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|383320032|ref|YP_005380873.1| - 0.14 12.2 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Thi4 PF01946.17 gi|383320033|ref|YP_005380874.1| - 1.3e-69 234.0 0.1 1.5e-69 233.8 0.1 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|383320033|ref|YP_005380874.1| - 2.4e-12 46.9 0.1 4e-12 46.2 0.1 1.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|383320033|ref|YP_005380874.1| - 4.5e-10 39.2 0.7 9.2e-07 28.3 0.2 2.4 2 1 1 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|383320033|ref|YP_005380874.1| - 5.8e-09 35.2 0.1 7.5e-09 34.8 0.1 1.1 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.24 gi|383320033|ref|YP_005380874.1| - 6.2e-09 35.9 0.8 7.8e-06 25.7 0.7 2.1 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|383320033|ref|YP_005380874.1| - 8.7e-09 35.1 0.1 1.3e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|383320033|ref|YP_005380874.1| - 6.5e-08 32.7 0.5 1.4e-07 31.7 0.5 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|383320033|ref|YP_005380874.1| - 1.9e-07 30.6 0.1 2e-07 30.5 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|383320033|ref|YP_005380874.1| - 2.1e-05 23.9 1.6 3.4e-05 23.3 1.6 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|383320033|ref|YP_005380874.1| - 3.8e-05 24.2 0.2 0.00012 22.6 0.2 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|383320033|ref|YP_005380874.1| - 0.00058 19.0 0.7 0.0073 15.4 0.2 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.22 gi|383320033|ref|YP_005380874.1| - 0.00076 18.7 0.4 0.0012 18.0 0.1 1.4 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|383320033|ref|YP_005380874.1| - 0.0037 17.3 0.4 0.0075 16.3 0.4 1.5 1 0 0 1 1 1 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|383320033|ref|YP_005380874.1| - 0.01 15.2 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|383320033|ref|YP_005380874.1| - 0.025 13.5 0.2 0.065 12.1 0.1 1.7 2 0 0 2 2 2 0 Tryptophan halogenase GDI PF00996.18 gi|383320033|ref|YP_005380874.1| - 0.028 12.9 0.1 0.1 11.1 0.0 1.7 2 0 0 2 2 2 0 GDP dissociation inhibitor Shikimate_DH PF01488.20 gi|383320033|ref|YP_005380874.1| - 0.067 13.2 0.0 0.87 9.7 0.0 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|383320033|ref|YP_005380874.1| - 0.072 13.4 0.1 0.29 11.4 0.1 2.0 2 0 0 2 2 2 0 TrkA-N domain Cys_Met_Meta_PP PF01053.20 gi|383320034|ref|YP_005380875.1| - 8.9e-154 511.6 0.0 1e-153 511.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|383320034|ref|YP_005380875.1| - 5.6e-09 35.6 0.0 8.5e-09 35.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|383320034|ref|YP_005380875.1| - 6.1e-06 25.8 0.0 1.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|383320034|ref|YP_005380875.1| - 4.1e-05 23.0 0.0 0.0003 20.2 0.0 2.3 1 1 0 1 1 1 1 Beta-eliminating lyase Met_gamma_lyase PF06838.11 gi|383320034|ref|YP_005380875.1| - 0.0003 19.4 0.0 0.00048 18.8 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase Aminotran_5 PF00266.19 gi|383320034|ref|YP_005380875.1| - 0.00048 19.2 0.0 0.00074 18.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DUF1847 PF08901.11 gi|383320036|ref|YP_005380877.1| - 1.2e-30 106.2 1.2 2.4e-26 92.3 0.2 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1847) Radical_SAM PF04055.21 gi|383320037|ref|YP_005380878.1| - 3.5e-12 47.0 0.0 5.5e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HTH_24 PF13412.6 gi|383320038|ref|YP_005380879.1| - 1.2e-06 27.9 0.1 1.7e-06 27.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|383320038|ref|YP_005380879.1| - 0.0085 15.9 0.0 0.0099 15.7 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_micro PF17007.5 gi|383320038|ref|YP_005380879.1| - 0.012 14.4 0.0 0.014 14.3 0.0 1.0 1 0 0 1 1 1 0 HTH-like HTH_9 PF08221.11 gi|383320038|ref|YP_005380879.1| - 0.016 15.3 0.0 0.024 14.7 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain RNA_pol_Rpc34 PF05158.12 gi|383320038|ref|YP_005380879.1| - 0.017 14.5 0.0 0.018 14.4 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit MarR_2 PF12802.7 gi|383320038|ref|YP_005380879.1| - 0.021 14.7 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|383320038|ref|YP_005380879.1| - 0.025 14.4 0.0 0.033 14.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_42 PF06224.12 gi|383320038|ref|YP_005380879.1| - 0.059 12.9 0.0 0.059 12.9 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain RepL PF05732.11 gi|383320038|ref|YP_005380879.1| - 0.082 12.3 0.0 0.096 12.1 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) MFS_1 PF07690.16 gi|383320039|ref|YP_005380880.1| - 5.8e-46 157.0 43.7 5.8e-46 157.0 43.7 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Ycf4 PF02392.16 gi|383320039|ref|YP_005380880.1| - 0.012 15.2 7.4 0.095 12.3 0.7 2.9 2 1 1 3 3 3 0 Ycf4 OATP PF03137.20 gi|383320039|ref|YP_005380880.1| - 0.015 13.6 12.8 0.69 8.1 0.8 3.4 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family ThiS PF02597.20 gi|383320040|ref|YP_005380881.1| - 1.5e-18 67.2 0.1 1.7e-18 67.0 0.1 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|383320040|ref|YP_005380881.1| - 0.015 15.7 0.0 0.017 15.5 0.0 1.2 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Ub-Mut7C PF14451.6 gi|383320040|ref|YP_005380881.1| - 0.06 13.2 0.2 1.7 8.6 0.0 2.1 1 1 1 2 2 2 0 Mut7-C ubiquitin ThiF PF00899.21 gi|383320041|ref|YP_005380882.1| - 5.3e-66 222.5 0.0 6.9e-66 222.1 0.0 1.0 1 0 0 1 1 1 1 ThiF family DUF2769 PF10967.8 gi|383320042|ref|YP_005380883.1| - 1.5e-17 64.0 15.9 1.9e-17 63.6 15.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) Fer2_4 PF13510.6 gi|383320042|ref|YP_005380883.1| - 0.82 9.8 3.5 0.58 10.2 1.6 1.7 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain dCache_1 PF02743.18 gi|383320043|ref|YP_005380884.1| - 1.5e-20 74.0 4.9 3.2e-20 73.0 4.9 1.5 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 gi|383320043|ref|YP_005380884.1| - 4.5e-18 65.8 0.1 8.3e-18 64.9 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|383320043|ref|YP_005380884.1| - 1.6e-11 44.4 0.0 3.5e-11 43.3 0.0 1.6 1 0 0 1 1 1 1 HAMP domain HisKA PF00512.25 gi|383320043|ref|YP_005380884.1| - 0.0064 16.5 0.1 0.013 15.5 0.1 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|383320043|ref|YP_005380884.1| - 0.018 14.8 0.0 0.04 13.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|383320043|ref|YP_005380884.1| - 0.071 13.0 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 GHKL domain sCache_3_2 PF17203.4 gi|383320043|ref|YP_005380884.1| - 0.091 12.9 0.3 0.28 11.3 0.1 1.9 2 0 0 2 2 2 0 Single cache domain 3 dCache_3 PF14827.6 gi|383320043|ref|YP_005380884.1| - 0.11 12.2 0.0 0.82 9.3 0.0 2.2 1 1 0 1 1 1 0 Double sensory domain of two-component sensor kinase DUF326 PF03860.16 gi|383320044|ref|YP_005380885.1| - 1.4e-13 50.3 51.5 0.0001 22.1 0.3 5.0 4 1 1 5 5 5 5 Domain of Unknown Function (DUF326) YHS PF04945.13 gi|383320045|ref|YP_005380886.1| - 1.8e-17 63.1 4.7 1.9e-17 63.0 4.7 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|383320045|ref|YP_005380886.1| - 5.5e-05 23.4 3.2 8.6e-05 22.8 3.2 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|383320045|ref|YP_005380886.1| - 0.0011 18.8 1.0 0.0014 18.5 1.0 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif ATPase-cat_bd PF12156.8 gi|383320045|ref|YP_005380886.1| - 0.0012 19.6 0.5 0.0013 19.4 0.5 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase Fumarate_red_D PF02313.17 gi|383320046|ref|YP_005380887.1| - 0.015 15.4 3.2 0.017 15.2 3.2 1.1 1 0 0 1 1 1 0 Fumarate reductase subunit D ETRAMP PF09716.10 gi|383320046|ref|YP_005380887.1| - 2 8.6 4.0 2.6 8.2 4.0 1.2 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) E1-E2_ATPase PF00122.20 gi|383320047|ref|YP_005380888.1| - 2.8e-56 189.9 4.7 2.8e-56 189.9 4.7 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|383320047|ref|YP_005380888.1| - 2.5e-51 175.0 5.8 4.2e-51 174.2 5.8 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase YHS PF04945.13 gi|383320047|ref|YP_005380888.1| - 5.7e-11 42.3 0.1 1.2e-10 41.3 0.1 1.5 1 0 0 1 1 1 1 YHS domain Hydrolase_3 PF08282.12 gi|383320047|ref|YP_005380888.1| - 9.9e-07 28.7 1.3 0.00083 19.2 0.2 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|383320047|ref|YP_005380888.1| - 1.9e-05 25.2 0.0 5.9e-05 23.5 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Arc_trans_TRASH PF08394.10 gi|383320047|ref|YP_005380888.1| - 0.0089 16.3 0.6 0.028 14.8 0.2 2.0 2 0 0 2 2 2 1 Archaeal TRASH domain Methyltr_RsmB-F PF01189.17 gi|383320047|ref|YP_005380888.1| - 0.038 13.6 0.2 0.069 12.8 0.2 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DNA_photolyase PF00875.18 gi|383320047|ref|YP_005380888.1| - 0.039 14.0 0.0 0.079 13.0 0.0 1.4 1 0 0 1 1 1 0 DNA photolyase zf-FCS PF06467.14 gi|383320047|ref|YP_005380888.1| - 0.14 12.1 0.2 0.25 11.3 0.2 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif MukE PF04288.13 gi|383320047|ref|YP_005380888.1| - 0.16 10.9 0.5 1.3 7.9 0.2 2.1 2 0 0 2 2 2 0 MukE-like family HAD_2 PF13419.6 gi|383320047|ref|YP_005380888.1| - 0.21 11.6 0.7 1.6 8.8 0.3 2.4 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF2116 PF09889.9 gi|383320047|ref|YP_005380888.1| - 0.38 10.8 1.9 0.9 9.6 0.2 2.6 2 1 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Usp PF00582.26 gi|383320048|ref|YP_005380889.1| - 9.9e-35 120.1 3.2 2.6e-34 118.8 3.2 1.6 1 1 0 1 1 1 1 Universal stress protein family HemY_N PF07219.13 gi|383320049|ref|YP_005380890.1| - 0.81 9.9 2.6 1.1 9.5 2.6 1.1 1 0 0 1 1 1 0 HemY protein N-terminus DUF1529 PF07485.11 gi|383320050|ref|YP_005380891.1| - 1.2e-78 260.8 0.0 5.9e-39 132.7 0.0 2.0 2 0 0 2 2 2 2 Domain of Unknown Function (DUF1259) Sigma70_r1_1 PF03979.14 gi|383320050|ref|YP_005380891.1| - 0.079 13.0 0.1 13 5.9 0.0 2.2 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 DsbD PF02683.15 gi|383320051|ref|YP_005380892.1| - 7.4e-18 65.2 24.1 8.9e-18 65.0 24.1 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|383320051|ref|YP_005380892.1| - 2.6e-09 37.3 24.7 2.8e-06 27.4 13.2 2.2 1 1 1 2 2 2 2 Cytochrome C biogenesis protein transmembrane region ABC_tran PF00005.27 gi|383320054|ref|YP_005380895.1| - 1.6e-50 171.2 0.0 1.8e-24 86.8 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|383320054|ref|YP_005380895.1| - 2.8e-19 70.0 0.5 9.1e-05 22.4 0.1 4.2 3 1 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383320054|ref|YP_005380895.1| - 2.5e-11 43.5 1.3 7.1e-05 22.3 0.1 3.8 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|383320054|ref|YP_005380895.1| - 2.6e-09 36.7 0.4 0.003 17.3 0.1 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|383320054|ref|YP_005380895.1| - 3.7e-08 33.7 0.7 0.00089 19.5 0.0 3.1 4 0 0 4 4 2 2 AAA domain AAA_23 PF13476.6 gi|383320054|ref|YP_005380895.1| - 4.3e-08 33.9 1.6 0.00055 20.5 0.4 2.3 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|383320054|ref|YP_005380895.1| - 1.4e-07 32.1 0.5 0.0052 17.2 0.1 2.5 2 1 0 2 2 2 2 AAA ATPase domain MobB PF03205.14 gi|383320054|ref|YP_005380895.1| - 3e-06 27.2 1.6 0.0029 17.5 0.2 2.9 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 gi|383320054|ref|YP_005380895.1| - 4.3e-06 26.7 0.7 0.0061 16.5 0.1 2.5 2 0 0 2 2 2 2 NACHT domain T2SSE PF00437.20 gi|383320054|ref|YP_005380895.1| - 5.1e-06 25.7 0.2 1 8.4 0.0 3.2 3 0 0 3 3 3 2 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|383320054|ref|YP_005380895.1| - 1e-05 25.5 2.3 0.068 13.1 0.1 2.8 3 0 0 3 3 2 2 NTPase AAA_30 PF13604.6 gi|383320054|ref|YP_005380895.1| - 1.1e-05 25.2 1.2 0.13 12.0 0.1 2.7 2 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.6 gi|383320054|ref|YP_005380895.1| - 1.6e-05 25.1 0.1 0.52 10.6 0.0 3.2 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|383320054|ref|YP_005380895.1| - 3.2e-05 23.9 0.1 0.13 12.1 0.0 2.7 3 0 0 3 3 2 2 RsgA GTPase FtsK_SpoIIIE PF01580.18 gi|383320054|ref|YP_005380895.1| - 3.4e-05 23.3 0.1 0.048 13.0 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family TsaE PF02367.17 gi|383320054|ref|YP_005380895.1| - 4.3e-05 23.5 1.3 0.027 14.5 0.2 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 gi|383320054|ref|YP_005380895.1| - 6.7e-05 22.2 0.8 0.37 9.9 0.0 2.7 3 0 0 3 3 3 2 NB-ARC domain MMR_HSR1 PF01926.23 gi|383320054|ref|YP_005380895.1| - 7e-05 22.9 1.2 0.25 11.5 0.0 2.8 2 0 0 2 2 2 2 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|383320054|ref|YP_005380895.1| - 8.9e-05 22.5 1.9 0.17 11.8 0.0 3.1 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|383320054|ref|YP_005380895.1| - 0.00011 21.9 0.5 0.51 9.9 0.1 2.8 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.6 gi|383320054|ref|YP_005380895.1| - 0.00017 21.8 0.5 0.14 12.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|383320054|ref|YP_005380895.1| - 0.00018 21.5 0.1 1.4 9.0 0.0 3.3 3 0 0 3 3 3 1 AAA domain cobW PF02492.19 gi|383320054|ref|YP_005380895.1| - 0.00044 19.9 2.7 0.17 11.5 0.3 2.8 3 0 0 3 3 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|383320054|ref|YP_005380895.1| - 0.00046 20.6 1.1 0.42 11.0 0.0 3.1 4 0 0 4 4 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|383320054|ref|YP_005380895.1| - 0.00054 20.5 1.7 0.55 10.8 0.2 2.8 3 0 0 3 3 2 1 AAA domain AAA_24 PF13479.6 gi|383320054|ref|YP_005380895.1| - 0.00055 19.7 0.7 1 9.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain PIF1 PF05970.14 gi|383320054|ref|YP_005380895.1| - 0.00078 18.7 0.2 0.6 9.2 0.0 2.2 2 0 0 2 2 2 2 PIF1-like helicase CbiA PF01656.23 gi|383320054|ref|YP_005380895.1| - 0.00084 19.4 0.3 0.89 9.6 0.0 2.7 3 0 0 3 3 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ATP_bind_1 PF03029.17 gi|383320054|ref|YP_005380895.1| - 0.001 18.9 0.4 0.89 9.3 0.1 2.3 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein ATP-synt_ab PF00006.25 gi|383320054|ref|YP_005380895.1| - 0.001 18.8 0.0 0.62 9.7 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain PduV-EutP PF10662.9 gi|383320054|ref|YP_005380895.1| - 0.0011 18.7 0.9 0.68 9.7 0.1 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation RNA_helicase PF00910.22 gi|383320054|ref|YP_005380895.1| - 0.0018 18.7 0.3 1 9.8 0.0 2.7 2 0 0 2 2 2 1 RNA helicase APS_kinase PF01583.20 gi|383320054|ref|YP_005380895.1| - 0.0024 17.8 1.2 0.84 9.5 0.1 2.5 2 0 0 2 2 2 1 Adenylylsulphate kinase DLIC PF05783.11 gi|383320054|ref|YP_005380895.1| - 0.0029 16.5 0.2 0.037 12.9 0.0 2.0 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) AAA_19 PF13245.6 gi|383320054|ref|YP_005380895.1| - 0.0036 17.6 0.6 1.1 9.5 0.1 2.6 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|383320054|ref|YP_005380895.1| - 0.0044 16.7 1.3 0.27 10.9 0.2 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 gi|383320054|ref|YP_005380895.1| - 0.005 16.6 1.1 1.6 8.5 0.0 3.5 4 0 0 4 4 4 1 IstB-like ATP binding protein MeaB PF03308.16 gi|383320054|ref|YP_005380895.1| - 0.0057 15.7 0.3 0.55 9.2 0.1 2.5 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_7 PF12775.7 gi|383320054|ref|YP_005380895.1| - 0.0068 15.9 0.2 2.9 7.4 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|383320054|ref|YP_005380895.1| - 0.0085 15.4 0.1 3.5 6.9 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_27 PF13514.6 gi|383320054|ref|YP_005380895.1| - 0.0098 15.5 0.1 2.6 7.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|383320054|ref|YP_005380895.1| - 0.01 14.6 0.2 3.6 6.1 0.1 2.6 3 0 0 3 3 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|383320054|ref|YP_005380895.1| - 0.011 14.7 1.0 0.24 10.2 0.1 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Pox_A32 PF04665.12 gi|383320054|ref|YP_005380895.1| - 0.013 15.0 0.7 0.85 9.0 0.1 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein ATPase PF06745.13 gi|383320054|ref|YP_005380895.1| - 0.013 14.8 1.9 0.88 8.9 0.1 2.6 3 0 0 3 3 2 0 KaiC AAA_28 PF13521.6 gi|383320054|ref|YP_005380895.1| - 0.015 15.5 2.0 4.5 7.5 0.2 2.6 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|383320054|ref|YP_005380895.1| - 0.025 14.3 0.4 0.54 9.9 0.0 2.3 2 1 0 2 2 2 0 AAA ATPase domain DUF2075 PF09848.9 gi|383320054|ref|YP_005380895.1| - 0.03 13.6 0.8 1.4 8.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Mg_chelatase PF01078.21 gi|383320054|ref|YP_005380895.1| - 0.043 13.2 0.3 7 6.0 0.1 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PRK PF00485.18 gi|383320054|ref|YP_005380895.1| - 0.045 13.5 0.1 2.4 7.9 0.1 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|383320054|ref|YP_005380895.1| - 0.046 13.6 0.0 0.42 10.5 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain DUF87 PF01935.17 gi|383320054|ref|YP_005380895.1| - 0.047 13.8 2.8 1.1 9.3 0.2 2.8 3 0 0 3 3 3 0 Helicase HerA, central domain Septin PF00735.18 gi|383320054|ref|YP_005380895.1| - 0.051 12.8 0.4 3.1 7.0 0.0 2.2 2 0 0 2 2 2 0 Septin G-alpha PF00503.20 gi|383320054|ref|YP_005380895.1| - 0.051 12.7 0.1 2.8 7.0 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit Sigma54_activat PF00158.26 gi|383320054|ref|YP_005380895.1| - 0.058 13.1 0.2 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_ATPase PF09818.9 gi|383320054|ref|YP_005380895.1| - 0.061 12.1 5.3 1.9 7.2 0.2 3.6 4 0 0 4 4 4 0 Predicted ATPase of the ABC class DUF815 PF05673.13 gi|383320054|ref|YP_005380895.1| - 0.072 12.2 0.1 2.8 7.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Roc PF08477.13 gi|383320054|ref|YP_005380895.1| - 0.091 13.0 0.9 8.2 6.7 0.2 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Thymidylate_kin PF02223.17 gi|383320054|ref|YP_005380895.1| - 0.19 11.4 2.0 3 7.5 0.1 2.7 3 0 0 3 3 2 0 Thymidylate kinase KAP_NTPase PF07693.14 gi|383320054|ref|YP_005380895.1| - 0.2 10.9 0.0 4.2 6.5 0.0 2.3 2 1 0 2 2 2 0 KAP family P-loop domain Viral_helicase1 PF01443.18 gi|383320054|ref|YP_005380895.1| - 0.29 10.8 0.8 9.2 5.9 0.1 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_5 PF07728.14 gi|383320054|ref|YP_005380895.1| - 0.3 11.1 1.5 25 4.9 0.3 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|383320054|ref|YP_005380895.1| - 1.4 9.4 3.4 37 4.7 0.1 2.9 3 0 0 3 3 2 0 AAA domain CbiQ PF02361.16 gi|383320055|ref|YP_005380896.1| - 1.5e-32 113.0 9.2 1.9e-32 112.6 9.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein ETRAMP PF09716.10 gi|383320055|ref|YP_005380896.1| - 7.8 6.6 10.3 28 4.9 0.0 3.8 2 1 2 4 4 4 0 Malarial early transcribed membrane protein (ETRAMP) PAS_9 PF13426.7 gi|383320056|ref|YP_005380897.1| - 1.2e-27 96.2 0.0 1.5e-13 50.9 0.0 2.5 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|383320056|ref|YP_005380897.1| - 1.1e-18 67.8 0.0 2.4e-18 66.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|383320056|ref|YP_005380897.1| - 1e-16 61.0 0.1 2.3e-09 37.4 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|383320056|ref|YP_005380897.1| - 1.8e-16 60.3 0.0 1.3e-09 38.2 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|383320056|ref|YP_005380897.1| - 3e-15 56.2 0.0 1.3e-07 31.6 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|383320056|ref|YP_005380897.1| - 8.8e-14 51.1 0.0 8.3e-06 25.7 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_12 PF18095.1 gi|383320056|ref|YP_005380897.1| - 2.6e-06 27.2 0.0 0.0023 17.6 0.0 2.5 2 0 0 2 2 2 2 UPF0242 C-terminal PAS-like domain HATPase_c_2 PF13581.6 gi|383320056|ref|YP_005380897.1| - 5e-05 23.2 0.0 0.0001 22.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain NTP_transferase PF00483.23 gi|383320056|ref|YP_005380897.1| - 0.014 15.0 0.1 0.049 13.2 0.0 2.0 2 1 1 3 3 3 0 Nucleotidyl transferase MEKHLA PF08670.11 gi|383320056|ref|YP_005380897.1| - 0.017 15.0 0.0 3.1 7.7 0.0 2.3 2 0 0 2 2 2 0 MEKHLA domain PAS_7 PF12860.7 gi|383320056|ref|YP_005380897.1| - 0.042 14.0 0.0 0.15 12.2 0.0 2.0 2 0 0 2 2 2 0 PAS fold DNA_pol_B PF00136.21 gi|383320057|ref|YP_005380898.1| - 1.1e-67 228.8 0.0 1.6e-67 228.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|383320057|ref|YP_005380898.1| - 3.1e-38 131.8 0.0 2.3e-36 125.6 0.0 2.5 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|383320057|ref|YP_005380898.1| - 2.1e-07 31.1 0.0 3.9e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|383320057|ref|YP_005380898.1| - 1.7e-06 27.9 0.0 3.6e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|383320057|ref|YP_005380898.1| - 0.073 11.9 0.7 0.21 10.4 0.1 1.9 3 0 0 3 3 3 0 DNA polymerase type B, organellar and viral HHH_3 PF12836.7 gi|383320058|ref|YP_005380899.1| - 4.3e-08 33.3 0.0 8.6e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Radical_SAM PF04055.21 gi|383320058|ref|YP_005380899.1| - 6.4e-06 26.6 0.6 0.00013 22.4 0.6 2.8 1 1 1 2 2 2 1 Radical SAM superfamily HHH PF00633.23 gi|383320058|ref|YP_005380899.1| - 9.8e-06 25.2 0.0 2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|383320058|ref|YP_005380899.1| - 0.00056 20.5 0.0 0.0012 19.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|383320058|ref|YP_005380899.1| - 0.043 13.9 0.0 0.073 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif Proteasome_A_N PF10584.9 gi|383320058|ref|YP_005380899.1| - 0.14 11.9 0.3 3.6 7.3 0.0 2.3 2 0 0 2 2 2 0 Proteasome subunit A N-terminal signature DUF4130 PF13566.6 gi|383320059|ref|YP_005380900.1| - 6.5e-17 61.9 0.1 1e-16 61.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 Helicase_Sgs1 PF11408.8 gi|383320059|ref|YP_005380900.1| - 0.0032 17.5 0.0 0.0084 16.1 0.0 1.7 1 0 0 1 1 1 1 Sgs1 RecQ helicase DUF2749 PF10907.8 gi|383320060|ref|YP_005380901.1| - 0.014 15.5 20.2 44 4.3 0.1 6.1 6 0 0 6 6 6 0 Protein of unknown function (DUF2749) CobW_C PF07683.14 gi|383320060|ref|YP_005380901.1| - 0.97 9.4 4.3 5.6e+02 0.5 0.0 5.0 6 0 0 6 6 6 0 Cobalamin synthesis protein cobW C-terminal domain Radical_SAM PF04055.21 gi|383320061|ref|YP_005380902.1| - 1.7e-21 77.3 0.0 2.6e-21 76.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|383320061|ref|YP_005380902.1| - 0.025 14.7 0.1 0.044 13.9 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain CdAMP_rec PF06153.11 gi|383320061|ref|YP_005380902.1| - 0.031 14.5 0.0 0.11 12.8 0.0 1.8 2 0 0 2 2 2 0 Cyclic-di-AMP receptor PhosphMutase PF10143.9 gi|383320062|ref|YP_005380903.1| - 9.4e-53 178.6 0.0 1.9e-52 177.6 0.0 1.5 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|383320062|ref|YP_005380903.1| - 2.1e-42 145.2 0.0 2.4e-42 145.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|383320062|ref|YP_005380903.1| - 0.0019 17.3 0.2 0.0026 16.8 0.2 1.1 1 0 0 1 1 1 1 Alkaline phosphatase UPF0052 PF01933.18 gi|383320063|ref|YP_005380904.1| - 7.8e-47 159.9 0.0 9.9e-47 159.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 RbsD_FucU PF05025.13 gi|383320063|ref|YP_005380904.1| - 0.038 14.4 0.0 0.091 13.2 0.0 1.6 1 0 0 1 1 1 0 RbsD / FucU transport protein family SNAD3 PF18749.1 gi|383320063|ref|YP_005380904.1| - 0.19 10.8 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 3 HD PF01966.22 gi|383320064|ref|YP_005380905.1| - 6.8e-16 58.6 1.1 7.1e-15 55.3 0.8 2.4 2 1 0 2 2 2 1 HD domain HDOD PF08668.12 gi|383320064|ref|YP_005380905.1| - 0.0018 17.8 0.0 0.0033 16.9 0.0 1.3 1 0 0 1 1 1 1 HDOD domain Cupin_6 PF12852.7 gi|383320065|ref|YP_005380906.1| - 0.049 13.3 0.0 0.064 13.0 0.0 1.1 1 0 0 1 1 1 0 Cupin PCP_red PF08369.10 gi|383320065|ref|YP_005380906.1| - 0.1 12.8 0.2 0.21 11.8 0.2 1.5 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit Flavoprotein PF02441.19 gi|383320066|ref|YP_005380907.1| - 1.2e-24 86.9 0.0 1.5e-24 86.6 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein DUF3939 PF13075.6 gi|383320066|ref|YP_005380907.1| - 0.06 13.4 0.0 0.095 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3939) PTH2 PF01981.16 gi|383320068|ref|YP_005380909.1| - 1e-36 125.8 0.1 1.1e-36 125.6 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 FAD_binding_3 PF01494.19 gi|383320069|ref|YP_005380910.1| - 1.1e-16 61.1 2.8 5.9e-13 48.8 0.9 3.0 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|383320069|ref|YP_005380910.1| - 1.4e-13 51.0 1.3 1.9e-13 50.6 1.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|383320069|ref|YP_005380910.1| - 5.1e-12 45.5 0.2 1.2e-09 37.7 0.1 2.2 3 0 0 3 3 3 2 Lycopene cyclase protein HI0933_like PF03486.14 gi|383320069|ref|YP_005380910.1| - 1.9e-08 33.4 0.6 5.8e-08 31.9 0.1 1.8 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|383320069|ref|YP_005380910.1| - 3.3e-07 30.2 4.9 0.0018 18.0 0.3 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|383320069|ref|YP_005380910.1| - 1.2e-06 27.6 3.1 0.029 13.2 0.2 3.0 2 1 1 3 3 3 3 Tryptophan halogenase GIDA PF01134.22 gi|383320069|ref|YP_005380910.1| - 5.7e-06 25.7 0.5 6.7e-06 25.4 0.5 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|383320069|ref|YP_005380910.1| - 8e-06 25.3 10.3 0.00011 21.6 5.0 2.9 2 2 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|383320069|ref|YP_005380910.1| - 2.4e-05 23.7 0.3 5.6e-05 22.5 0.2 1.7 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|383320069|ref|YP_005380910.1| - 2.4e-05 23.6 3.0 0.00042 19.5 0.4 2.4 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|383320069|ref|YP_005380910.1| - 2.6e-05 24.4 0.1 7.7e-05 22.9 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|383320069|ref|YP_005380910.1| - 0.0034 17.9 0.3 0.025 15.1 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|383320069|ref|YP_005380910.1| - 0.12 11.6 0.8 0.28 10.4 0.7 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_12 PF13353.6 gi|383320071|ref|YP_005380912.1| - 8.1e-09 35.9 0.0 1.8e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|383320071|ref|YP_005380912.1| - 1.1e-07 32.3 0.4 3.1e-07 30.9 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|383320071|ref|YP_005380912.1| - 1.8e-05 24.9 0.0 5.1e-05 23.4 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain NAD_binding_1 PF00175.21 gi|383320072|ref|YP_005380913.1| - 6.7e-20 71.8 0.0 1.1e-19 71.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|383320072|ref|YP_005380913.1| - 1.5e-09 38.1 0.0 2.6e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_8 PF08022.12 gi|383320072|ref|YP_005380913.1| - 1.3e-06 28.5 0.0 2e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 FAD-binding domain NAD_binding_6 PF08030.12 gi|383320072|ref|YP_005380913.1| - 0.0023 18.1 0.1 1.7 8.8 0.0 2.3 1 1 1 2 2 2 2 Ferric reductase NAD binding domain Topo-VIb_trans PF09239.11 gi|383320073|ref|YP_005380914.1| - 1e-64 217.2 0.0 1.6e-64 216.6 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|383320073|ref|YP_005380914.1| - 2.5e-10 40.8 0.0 5.1e-10 39.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|383320073|ref|YP_005380914.1| - 9.6e-08 31.9 0.0 2e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|383320073|ref|YP_005380914.1| - 0.089 11.5 0.0 0.17 10.6 0.0 1.4 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Ifi-6-16 PF06140.13 gi|383320073|ref|YP_005380914.1| - 0.46 10.4 1.4 28 4.7 0.2 2.5 3 0 0 3 3 3 0 Interferon-induced 6-16 family TP6A_N PF04406.14 gi|383320074|ref|YP_005380915.1| - 1.3e-14 53.9 0.0 2.9e-14 52.8 0.0 1.6 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF3344 PF11824.8 gi|383320075|ref|YP_005380916.1| - 2.4e-119 398.1 19.3 8.1e-69 232.3 10.1 3.4 4 1 0 4 4 4 2 Protein of unknown function (DUF3344) PKD PF00801.20 gi|383320075|ref|YP_005380916.1| - 1.8e-39 133.4 34.3 1.3e-10 41.0 2.3 6.6 6 0 0 6 6 6 5 PKD domain CARDB PF07705.11 gi|383320075|ref|YP_005380916.1| - 1e-12 48.2 3.4 4.6e-12 46.1 0.2 3.1 2 0 0 2 2 2 1 CARDB PKD_3 PF16820.5 gi|383320075|ref|YP_005380916.1| - 1.9e-06 27.5 2.1 0.044 13.5 0.3 3.5 3 0 0 3 3 3 2 PKD-like domain EF-hand_6 PF13405.6 gi|383320075|ref|YP_005380916.1| - 6.2 7.0 21.7 14 5.9 0.1 6.0 6 0 0 6 6 6 0 EF-hand domain DUF3344 PF11824.8 gi|383320076|ref|YP_005380917.1| - 4.4e-49 167.6 20.2 5.6e-49 167.2 20.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3344) CxxCxxCC PF03692.15 gi|383320077|ref|YP_005380918.1| - 5.7e-09 36.5 4.4 9.7e-09 35.8 2.3 2.3 2 0 0 2 2 2 1 Putative zinc- or iron-chelating domain MFS_1 PF07690.16 gi|383320078|ref|YP_005380919.1| - 0.006 15.5 3.8 0.0065 15.4 3.8 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily BT1 PF03092.16 gi|383320078|ref|YP_005380919.1| - 0.0086 14.4 2.9 0.0094 14.2 2.9 1.0 1 0 0 1 1 1 1 BT1 family Tetraspanin PF00335.20 gi|383320078|ref|YP_005380919.1| - 0.031 14.0 4.0 0.035 13.8 4.0 1.0 1 0 0 1 1 1 0 Tetraspanin family DUF2070 PF09843.9 gi|383320078|ref|YP_005380919.1| - 0.2 9.9 4.1 0.21 9.8 4.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Col_cuticle_N PF01484.17 gi|383320078|ref|YP_005380919.1| - 2.8 8.1 7.4 0.15 12.2 1.9 1.7 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain S1FA PF04689.13 gi|383320078|ref|YP_005380919.1| - 4 7.6 5.3 1.2 9.3 2.2 1.6 1 1 1 2 2 2 0 DNA binding protein S1FA DUF2207 PF09972.9 gi|383320078|ref|YP_005380919.1| - 6.8 5.3 7.8 7.9 5.1 7.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CPBP PF02517.16 gi|383320079|ref|YP_005380920.1| - 1.6e-09 38.0 4.6 1.6e-09 38.0 4.6 3.0 1 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF4501 PF14946.6 gi|383320079|ref|YP_005380920.1| - 2.8 8.0 7.1 0.49 10.4 1.5 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4501) DUF86 PF01934.17 gi|383320080|ref|YP_005380921.1| - 2.6e-12 46.6 0.2 3e-12 46.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 SHOCT PF09851.9 gi|383320080|ref|YP_005380921.1| - 0.00094 18.8 0.1 0.0025 17.5 0.1 1.7 1 0 0 1 1 1 1 Short C-terminal domain DUF4145 PF13643.6 gi|383320080|ref|YP_005380921.1| - 0.034 14.3 0.0 0.065 13.4 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) Polbeta PF18765.1 gi|383320081|ref|YP_005380922.1| - 1.4e-17 63.5 0.0 2.1e-17 63.0 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|383320081|ref|YP_005380922.1| - 3.1e-11 43.4 0.0 4.5e-11 42.9 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain AdoHcyase_NAD PF00670.21 gi|383320081|ref|YP_005380922.1| - 0.071 13.2 0.0 0.087 12.9 0.0 1.2 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Adenyl_cycl_N PF12633.7 gi|383320081|ref|YP_005380922.1| - 0.18 11.7 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain HAD_2 PF13419.6 gi|383320082|ref|YP_005380923.1| - 5.4e-25 88.5 0.0 6.8e-25 88.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|383320082|ref|YP_005380923.1| - 1e-13 52.1 0.0 1.5e-09 38.5 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|383320082|ref|YP_005380923.1| - 5.5e-06 26.9 0.1 1.5e-05 25.5 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|383320082|ref|YP_005380923.1| - 1.3e-05 25.2 0.0 2.5e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like NT5C PF06941.12 gi|383320082|ref|YP_005380923.1| - 0.019 14.8 0.1 0.038 13.9 0.1 1.6 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Cyt-b5 PF00173.28 gi|383320082|ref|YP_005380923.1| - 0.075 13.2 0.0 0.15 12.2 0.0 1.6 1 1 0 1 1 1 0 Cytochrome b5-like Heme/Steroid binding domain MtrG PF04210.13 gi|383320082|ref|YP_005380923.1| - 0.1 12.5 0.0 7.8 6.4 0.0 2.8 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G Metallophos_2 PF12850.7 gi|383320083|ref|YP_005380924.1| - 7.6e-06 26.2 0.0 1.3e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|383320083|ref|YP_005380924.1| - 1.2e-05 25.9 1.6 2e-05 25.2 1.6 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DNA_pol_E_B PF04042.16 gi|383320083|ref|YP_005380924.1| - 0.24 10.7 0.0 0.61 9.4 0.0 1.6 1 1 0 1 1 1 0 DNA polymerase alpha/epsilon subunit B CxxCxxCC PF03692.15 gi|383320084|ref|YP_005380925.1| - 2.5e-08 34.5 1.1 4e-08 33.8 1.1 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Trypsin_2 PF13365.6 gi|383320085|ref|YP_005380926.1| - 1.8e-32 113.3 0.3 2.9e-32 112.6 0.3 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|383320085|ref|YP_005380926.1| - 1.7e-15 57.1 0.0 3.5e-15 56.1 0.0 1.6 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|383320085|ref|YP_005380926.1| - 2.3e-15 57.0 0.1 4.1e-15 56.2 0.1 1.4 1 1 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 gi|383320085|ref|YP_005380926.1| - 4.1e-09 36.2 0.1 1e-08 34.9 0.0 1.8 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|383320085|ref|YP_005380926.1| - 5.2e-09 36.3 0.0 1.4e-08 34.9 0.0 1.8 1 0 0 1 1 1 1 PDZ domain Peptidase_S46 PF10459.9 gi|383320085|ref|YP_005380926.1| - 4.3e-06 25.7 0.5 0.0095 14.6 0.2 2.1 2 0 0 2 2 2 2 Peptidase S46 GRASP55_65 PF04495.14 gi|383320085|ref|YP_005380926.1| - 0.0043 17.4 0.0 0.0084 16.4 0.0 1.5 1 0 0 1 1 1 1 GRASP55/65 PDZ-like domain Tricorn_PDZ PF14685.6 gi|383320085|ref|YP_005380926.1| - 0.023 14.6 0.1 0.11 12.5 0.0 2.2 2 0 0 2 2 2 0 Tricorn protease PDZ domain Peptidase_S7 PF00949.21 gi|383320085|ref|YP_005380926.1| - 0.087 12.6 0.2 0.19 11.5 0.2 1.6 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease ATP-sulfurylase PF01747.17 gi|383320086|ref|YP_005380927.1| - 3.7e-70 235.7 0.2 6.6e-70 234.9 0.2 1.3 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|383320086|ref|YP_005380927.1| - 1.2e-35 122.6 0.0 1.9e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain ABC_tran PF00005.27 gi|383320088|ref|YP_005380929.1| - 1.4e-21 77.5 0.0 1.9e-21 77.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320088|ref|YP_005380929.1| - 4.8e-11 43.0 0.9 2.8e-06 27.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|383320088|ref|YP_005380929.1| - 0.002 17.9 0.1 1.6 8.3 0.3 2.1 2 0 0 2 2 2 2 AAA ATPase domain SRP54 PF00448.22 gi|383320088|ref|YP_005380929.1| - 0.002 17.8 0.7 0.0036 17.0 0.3 1.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|383320088|ref|YP_005380929.1| - 0.0063 17.0 0.2 0.012 16.1 0.1 1.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|383320088|ref|YP_005380929.1| - 0.019 14.7 0.5 0.032 14.0 0.5 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|383320088|ref|YP_005380929.1| - 0.064 13.0 0.3 0.11 12.2 0.3 1.4 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|383320088|ref|YP_005380929.1| - 0.17 11.6 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA PF00004.29 gi|383320088|ref|YP_005380929.1| - 0.18 12.2 0.5 0.71 10.3 0.3 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|383320088|ref|YP_005380929.1| - 0.2 11.9 0.0 0.61 10.4 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|383320088|ref|YP_005380929.1| - 0.2 11.0 0.3 1.8 7.9 0.2 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Tubulin PF00091.25 gi|383320089|ref|YP_005380930.1| - 2.8e-38 132.1 1.2 6.7e-38 130.9 1.2 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|383320089|ref|YP_005380930.1| - 3.4e-35 120.2 1.5 1e-34 118.7 0.1 2.5 2 1 0 2 2 2 1 FtsZ family, C-terminal domain AA_kinase PF00696.28 gi|383320089|ref|YP_005380930.1| - 0.0071 16.0 0.1 0.012 15.2 0.1 1.3 1 0 0 1 1 1 1 Amino acid kinase family NAD_binding_10 PF13460.6 gi|383320089|ref|YP_005380930.1| - 0.029 14.2 0.5 0.085 12.7 0.5 1.8 1 0 0 1 1 1 0 NAD(P)H-binding Csm1_B PF18211.1 gi|383320089|ref|YP_005380930.1| - 0.16 11.8 0.0 0.42 10.5 0.0 1.7 1 0 0 1 1 1 0 Csm1 subunit domain B Tubulin_2 PF13809.6 gi|383320089|ref|YP_005380930.1| - 8.2 5.5 6.7 5.8 6.0 2.3 2.2 1 1 0 2 2 2 0 Tubulin like DUF2160 PF09928.9 gi|383320090|ref|YP_005380931.1| - 1.5 9.2 10.9 1 9.8 4.2 2.3 2 1 0 2 2 2 0 Predicted small integral membrane protein (DUF2160) UPF0182 PF03699.13 gi|383320090|ref|YP_005380931.1| - 3.1 5.8 4.6 3.2 5.8 4.6 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DUF2530 PF10745.9 gi|383320090|ref|YP_005380931.1| - 3.5 7.9 6.6 0.97 9.7 2.4 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2530) Orf78 PF06024.12 gi|383320091|ref|YP_005380932.1| - 4.4 7.7 6.1 20 5.6 1.3 2.1 2 0 0 2 2 2 0 Orf78 (ac78) DeoC PF01791.9 gi|383320092|ref|YP_005380933.1| - 2.4e-52 177.9 0.0 2.8e-52 177.7 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase NMO PF03060.15 gi|383320092|ref|YP_005380933.1| - 0.036 13.5 0.6 0.076 12.4 0.6 1.5 1 0 0 1 1 1 0 Nitronate monooxygenase ThiG PF05690.14 gi|383320092|ref|YP_005380933.1| - 1.2 8.4 4.0 0.33 10.2 0.6 1.8 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG ABC_tran PF00005.27 gi|383320093|ref|YP_005380934.1| - 3.7e-31 108.5 0.0 5.3e-31 108.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320093|ref|YP_005380934.1| - 1.8e-16 60.8 0.2 1.2e-09 38.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|383320093|ref|YP_005380934.1| - 2.9e-09 37.5 0.0 1.8e-08 35.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|383320093|ref|YP_005380934.1| - 0.00086 19.1 0.0 0.64 9.7 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|383320093|ref|YP_005380934.1| - 0.0009 19.8 0.0 0.0012 19.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|383320093|ref|YP_005380934.1| - 0.0069 16.1 0.2 0.014 15.1 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|383320093|ref|YP_005380934.1| - 0.019 14.7 0.1 2.1 8.0 0.1 2.4 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|383320093|ref|YP_005380934.1| - 0.035 14.5 0.0 0.096 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|383320093|ref|YP_005380934.1| - 0.078 13.4 0.2 0.5 10.8 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|383320093|ref|YP_005380934.1| - 0.13 11.7 0.0 3.2 7.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|383320093|ref|YP_005380934.1| - 0.15 11.8 0.0 0.27 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|383320093|ref|YP_005380934.1| - 0.15 11.6 0.1 0.28 10.8 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|383320093|ref|YP_005380934.1| - 0.17 12.2 0.1 0.46 10.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|383320094|ref|YP_005380935.1| - 9.8e-37 126.4 24.0 9.8e-37 126.4 24.0 1.9 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|383320094|ref|YP_005380935.1| - 3.4e-11 42.9 24.3 3.4e-11 42.9 24.3 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383320094|ref|YP_005380935.1| - 0.9 8.8 17.7 0.9 8.8 15.2 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein Fer2_3 PF13085.6 gi|383320095|ref|YP_005380936.1| - 0.0015 18.5 1.2 0.0018 18.3 1.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF2180 PF09947.9 gi|383320095|ref|YP_005380936.1| - 0.0093 15.9 6.9 0.0093 15.9 6.9 2.1 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2180) zf-B_box PF00643.24 gi|383320095|ref|YP_005380936.1| - 0.021 15.0 3.5 0.021 15.0 3.5 2.0 1 1 1 2 2 2 0 B-box zinc finger Gin PF10764.9 gi|383320095|ref|YP_005380936.1| - 0.021 14.7 4.6 0.059 13.3 4.6 1.7 1 0 0 1 1 1 0 Inhibitor of sigma-G Gin Fer2_4 PF13510.6 gi|383320095|ref|YP_005380936.1| - 0.11 12.6 4.6 0.17 12.0 4.6 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Prok-RING_2 PF14445.6 gi|383320095|ref|YP_005380936.1| - 0.33 11.2 5.5 0.56 10.4 5.5 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 2 FYVE PF01363.21 gi|383320095|ref|YP_005380936.1| - 0.45 10.7 9.9 27 5.0 9.6 2.2 1 1 0 1 1 1 0 FYVE zinc finger Herpes_LMP1 PF05297.11 gi|383320095|ref|YP_005380936.1| - 0.56 9.3 6.0 0.68 9.1 6.0 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) IBR PF01485.21 gi|383320095|ref|YP_005380936.1| - 0.86 9.9 7.0 1.5 9.1 7.0 1.5 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Xan_ur_permease PF00860.20 gi|383320096|ref|YP_005380937.1| - 3.3e-39 134.7 52.6 3.3e-39 134.7 52.6 1.4 1 1 0 1 1 1 1 Permease family Meth_synt_2 PF01717.18 gi|383320098|ref|YP_005380939.1| - 1.3e-46 159.4 6.2 9.9e-45 153.2 6.2 2.9 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain URO-D PF01208.17 gi|383320098|ref|YP_005380939.1| - 1.9e-05 24.0 0.4 7.4e-05 22.0 0.4 2.0 1 1 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_1 PF08267.12 gi|383320098|ref|YP_005380939.1| - 0.00052 19.6 0.0 0.00075 19.1 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Glyoxalase PF00903.25 gi|383320099|ref|YP_005380940.1| - 2.4e-16 60.1 0.3 2.8e-16 59.9 0.3 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|383320099|ref|YP_005380940.1| - 5.9e-05 23.0 0.1 0.00015 21.7 0.1 1.6 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|383320099|ref|YP_005380940.1| - 0.00085 19.6 0.0 0.023 15.0 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|383320099|ref|YP_005380940.1| - 0.0067 17.2 0.0 0.012 16.4 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain ZnuA PF01297.17 gi|383320100|ref|YP_005380941.1| - 2.3e-15 56.7 0.8 3.1e-15 56.3 0.8 1.2 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_sub_bind PF04392.12 gi|383320100|ref|YP_005380941.1| - 0.01 15.1 0.2 0.016 14.5 0.2 1.2 1 0 0 1 1 1 0 ABC transporter substrate binding protein ABC-3 PF00950.17 gi|383320101|ref|YP_005380942.1| - 4.2e-47 160.8 43.2 5e-47 160.6 43.2 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|383320101|ref|YP_005380942.1| - 0.00022 20.4 41.1 0.00055 19.0 41.1 1.7 1 1 0 1 1 1 1 FecCD transport family DUF3482 PF11981.8 gi|383320101|ref|YP_005380942.1| - 1.4 8.3 4.7 2 7.8 4.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) ABC_tran PF00005.27 gi|383320102|ref|YP_005380943.1| - 1.4e-26 93.7 0.0 1.7e-26 93.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320102|ref|YP_005380943.1| - 2.9e-09 37.2 0.3 0.0005 20.0 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|383320102|ref|YP_005380943.1| - 3.6e-05 24.4 0.1 5.6e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|383320102|ref|YP_005380943.1| - 0.0002 20.8 0.1 0.042 13.3 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|383320102|ref|YP_005380943.1| - 0.0003 21.0 0.3 0.015 15.5 0.3 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.15 gi|383320102|ref|YP_005380943.1| - 0.00082 19.3 0.0 0.069 13.1 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_27 PF13514.6 gi|383320102|ref|YP_005380943.1| - 0.0028 17.3 0.0 0.0043 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|383320102|ref|YP_005380943.1| - 0.0055 16.4 0.1 0.01 15.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|383320102|ref|YP_005380943.1| - 0.016 15.6 0.1 0.026 14.9 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|383320102|ref|YP_005380943.1| - 0.025 14.2 0.2 0.037 13.6 0.2 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|383320102|ref|YP_005380943.1| - 0.025 14.3 0.1 0.049 13.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|383320102|ref|YP_005380943.1| - 0.037 13.3 0.0 0.057 12.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 gi|383320102|ref|YP_005380943.1| - 0.066 13.1 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|383320102|ref|YP_005380943.1| - 0.066 13.1 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 NACHT domain ATPase_2 PF01637.18 gi|383320102|ref|YP_005380943.1| - 0.078 12.9 0.0 0.34 10.8 0.1 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|383320102|ref|YP_005380943.1| - 0.099 11.8 0.1 0.16 11.1 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|383320102|ref|YP_005380943.1| - 0.11 12.1 0.1 0.24 11.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|383320102|ref|YP_005380943.1| - 0.12 12.0 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|383320102|ref|YP_005380943.1| - 0.16 10.7 0.1 3.2 6.4 0.2 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SRP54 PF00448.22 gi|383320102|ref|YP_005380943.1| - 0.17 11.5 0.0 0.42 10.2 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|383320102|ref|YP_005380943.1| - 0.26 11.5 0.3 0.58 10.4 0.3 1.6 1 0 0 1 1 1 0 AAA domain FmdE PF02663.14 gi|383320103|ref|YP_005380944.1| - 3.9e-21 75.5 0.0 5.7e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Nuc_deoxyrib_tr PF05014.15 gi|383320104|ref|YP_005380945.1| - 1.8e-15 57.1 0.0 2e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 gi|383320104|ref|YP_005380945.1| - 9.8e-08 32.3 0.0 1.3e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase like DUF4062 PF13271.6 gi|383320104|ref|YP_005380945.1| - 0.04 14.3 0.0 0.053 13.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4062) S-l_SbsC_C PF18316.1 gi|383320105|ref|YP_005380946.1| - 0.061 13.8 2.5 2.9 8.5 0.0 2.5 2 0 0 2 2 2 0 S-layer protein SbsC C-terminal domain DUF4366 PF14283.6 gi|383320105|ref|YP_005380946.1| - 0.64 10.1 2.0 11 6.1 2.0 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4366) FAP PF07174.11 gi|383320105|ref|YP_005380946.1| - 1.6 8.1 23.4 2.4 7.6 23.4 1.3 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) SOG2 PF10428.9 gi|383320105|ref|YP_005380946.1| - 9.6 5.3 11.5 11 5.0 11.5 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein DUF3344 PF11824.8 gi|383320106|ref|YP_005380947.1| - 3.1e-187 620.8 77.8 1.6e-73 247.7 12.2 5.1 5 0 0 5 5 5 3 Protein of unknown function (DUF3344) PKD PF00801.20 gi|383320106|ref|YP_005380947.1| - 6.4e-43 144.5 64.1 2.9e-11 43.0 2.8 7.6 8 0 0 8 8 8 5 PKD domain CARDB PF07705.11 gi|383320106|ref|YP_005380947.1| - 8e-29 99.9 23.6 1.9e-19 69.8 6.6 5.3 5 0 0 5 5 5 2 CARDB MG2 PF01835.19 gi|383320106|ref|YP_005380947.1| - 2.1e-07 31.3 7.3 2.5 8.6 0.0 5.8 4 1 1 5 5 5 3 MG2 domain PKD_3 PF16820.5 gi|383320106|ref|YP_005380947.1| - 0.00013 21.7 18.6 0.51 10.1 0.2 6.6 7 0 0 7 7 7 3 PKD-like domain UMPH-1 PF05822.12 gi|383320106|ref|YP_005380947.1| - 0.018 14.5 0.0 9 5.7 0.0 3.6 4 0 0 4 4 4 0 Pyrimidine 5'-nucleotidase (UMPH-1) Dockerin_1 PF00404.18 gi|383320106|ref|YP_005380947.1| - 1.3 9.2 15.0 8.1 6.7 0.8 5.9 6 1 0 6 6 6 0 Dockerin type I domain EF-hand_1 PF00036.32 gi|383320106|ref|YP_005380947.1| - 3.6 7.4 19.9 0.75 9.5 0.4 6.2 6 0 0 6 6 6 0 EF hand EF-hand_7 PF13499.6 gi|383320106|ref|YP_005380947.1| - 5.7 7.5 6.0 6.9 7.2 0.9 3.8 4 1 0 4 4 4 0 EF-hand domain pair Rib PF08428.10 gi|383320106|ref|YP_005380947.1| - 6.6 6.8 20.4 8.6 6.4 1.0 6.3 5 0 0 5 5 5 0 Rib/alpha-like repeat AbiEi_4 PF13338.6 gi|383320108|ref|YP_005380949.1| - 1e-05 25.6 0.3 2.3e-05 24.5 0.3 1.6 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin AbiEi_1 PF09407.10 gi|383320108|ref|YP_005380949.1| - 2.9e-05 24.4 0.0 5.2e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 AbiEi antitoxin C-terminal domain TrmB PF01978.19 gi|383320108|ref|YP_005380949.1| - 0.0002 21.2 0.2 0.00068 19.5 0.1 2.0 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|383320108|ref|YP_005380949.1| - 0.0076 16.0 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HSP33 PF01430.19 gi|383320108|ref|YP_005380949.1| - 0.21 10.9 0.0 0.34 10.3 0.0 1.3 1 0 0 1 1 1 0 Hsp33 protein AbiEii PF08843.11 gi|383320109|ref|YP_005380950.1| - 3e-29 102.7 0.1 3.8e-29 102.3 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system MacB_PCD PF12704.7 gi|383320111|ref|YP_005380952.1| - 6.2e-17 62.6 4.9 6.2e-17 62.6 4.9 2.4 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|383320111|ref|YP_005380952.1| - 7e-09 36.0 6.7 7e-09 36.0 6.7 3.1 3 0 0 3 3 3 1 FtsX-like permease family ABC_tran PF00005.27 gi|383320112|ref|YP_005380953.1| - 1.5e-34 119.5 0.0 1.9e-34 119.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320112|ref|YP_005380953.1| - 1.4e-10 41.5 0.4 0.00015 21.7 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383320112|ref|YP_005380953.1| - 3e-07 30.1 0.1 0.00078 18.9 0.0 2.2 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|383320112|ref|YP_005380953.1| - 2.1e-05 24.5 0.1 3.8e-05 23.6 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|383320112|ref|YP_005380953.1| - 0.00026 20.7 0.2 0.00049 19.8 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|383320112|ref|YP_005380953.1| - 0.0022 18.4 0.1 0.003 17.9 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|383320112|ref|YP_005380953.1| - 0.0026 17.8 0.1 0.006 16.7 0.1 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|383320112|ref|YP_005380953.1| - 0.0055 16.3 0.5 0.25 10.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|383320112|ref|YP_005380953.1| - 0.0071 16.9 0.1 0.011 16.2 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|383320112|ref|YP_005380953.1| - 0.0078 16.5 0.4 0.035 14.4 0.4 2.0 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 gi|383320112|ref|YP_005380953.1| - 0.024 14.7 0.4 0.11 12.6 0.2 1.9 2 0 0 2 2 2 0 Dynamin family AAA_15 PF13175.6 gi|383320112|ref|YP_005380953.1| - 0.032 13.9 0.1 0.039 13.6 0.1 1.2 1 0 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 gi|383320112|ref|YP_005380953.1| - 0.11 11.4 0.1 0.18 10.7 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB FeoB_N PF02421.18 gi|383320112|ref|YP_005380953.1| - 0.11 12.0 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B SbcCD_C PF13558.6 gi|383320112|ref|YP_005380953.1| - 0.13 12.5 0.1 3 8.1 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.22 gi|383320112|ref|YP_005380953.1| - 0.15 11.2 0.1 0.26 10.5 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|383320112|ref|YP_005380953.1| - 0.16 11.7 0.0 1.2 8.9 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein G-alpha PF00503.20 gi|383320112|ref|YP_005380953.1| - 0.22 10.6 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit DUF3344 PF11824.8 gi|383320113|ref|YP_005380954.1| - 4.2e-57 193.9 4.2 4.7e-57 193.7 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3344) DUF3344 PF11824.8 gi|383320114|ref|YP_005380955.1| - 8.8e-41 140.3 3.1 8.8e-41 140.3 3.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3344) CARDB PF07705.11 gi|383320114|ref|YP_005380955.1| - 2.5e-17 63.0 2.6 1.1e-09 38.4 0.0 2.6 2 0 0 2 2 2 2 CARDB DUF756 PF05506.12 gi|383320114|ref|YP_005380955.1| - 0.0013 19.6 0.1 0.23 12.4 0.1 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF756) DUF1533 PF07550.11 gi|383320114|ref|YP_005380955.1| - 0.027 14.4 2.1 3.1 7.8 0.0 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1533) Dr_adhesin PF12393.8 gi|383320115|ref|YP_005380956.1| - 2.2 8.7 4.3 4.1 7.9 4.3 1.5 1 0 0 1 1 1 0 Dr family adhesin DUF3344 PF11824.8 gi|383320116|ref|YP_005380957.1| - 9.6e-128 425.6 35.2 1.5e-70 238.0 17.0 4.6 5 0 0 5 5 5 2 Protein of unknown function (DUF3344) PKD PF00801.20 gi|383320116|ref|YP_005380957.1| - 7.7e-65 214.7 74.4 8e-11 41.6 2.8 8.9 9 0 0 9 9 9 7 PKD domain CARDB PF07705.11 gi|383320116|ref|YP_005380957.1| - 7.2e-20 71.1 5.2 7.2e-20 71.1 5.2 5.6 5 0 0 5 5 5 1 CARDB PKD_3 PF16820.5 gi|383320116|ref|YP_005380957.1| - 5.8e-08 32.4 19.6 2.1 8.1 0.1 8.1 9 0 0 9 9 9 5 PKD-like domain Y_Y_Y PF07495.13 gi|383320116|ref|YP_005380957.1| - 0.008 16.1 11.3 2.1 8.3 0.2 5.1 5 0 0 5 5 5 2 Y_Y_Y domain Pilin_N PF07790.11 gi|383320116|ref|YP_005380957.1| - 0.33 11.9 3.9 0.42 11.6 0.1 3.4 4 0 0 4 4 4 0 Archaeal Type IV pilin, N-terminal Gp5_C PF06715.12 gi|383320116|ref|YP_005380957.1| - 1.3 9.3 7.5 1.5e+02 2.8 0.1 5.8 4 0 0 4 4 4 0 Gp5 C-terminal repeat (3 copies) Peripla_BP_2 PF01497.18 gi|383320117|ref|YP_005380958.1| - 4.9e-35 121.2 0.2 6.4e-35 120.8 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ABC2_membrane PF01061.24 gi|383320118|ref|YP_005380959.1| - 2.4e-26 92.5 17.4 2.4e-26 92.5 17.4 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|383320118|ref|YP_005380959.1| - 1.1e-07 31.3 28.1 1.5e-07 30.8 28.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383320118|ref|YP_005380959.1| - 0.54 9.5 26.9 0.23 10.7 18.1 2.7 1 1 1 2 2 2 0 ABC-2 family transporter protein Peripla_BP_2 PF01497.18 gi|383320119|ref|YP_005380960.1| - 1.9e-29 102.9 0.1 3.3e-29 102.1 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Alpha-amylase_C PF02806.18 gi|383320120|ref|YP_005380961.1| - 0.011 16.2 0.0 0.023 15.2 0.0 1.5 1 1 0 1 1 1 0 Alpha amylase, C-terminal all-beta domain Arabino_trans_N PF17689.1 gi|383320120|ref|YP_005380961.1| - 0.079 13.1 0.1 0.1 12.8 0.1 1.2 1 0 0 1 1 1 0 Arabinosyltransferase concanavalin like domain CobN-Mg_chel PF02514.16 gi|383320121|ref|YP_005380962.1| - 0 1272.8 0.0 0 1272.6 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase Peripla_BP_2 PF01497.18 gi|383320122|ref|YP_005380963.1| - 2.2e-34 119.1 0.2 2.8e-34 118.7 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein OrfB_Zn_ribbon PF07282.11 gi|383320123|ref|YP_005380964.1| - 2.9e-12 46.3 3.3 2.7e-09 36.8 3.3 2.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain ADK_lid PF05191.14 gi|383320123|ref|YP_005380964.1| - 0.39 10.7 3.2 0.41 10.7 0.1 2.6 3 0 0 3 3 3 0 Adenylate kinase, active site lid DUF678 PF05077.12 gi|383320123|ref|YP_005380964.1| - 0.55 10.4 9.2 3.4 7.9 6.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF678) CdvA PF18822.1 gi|383320124|ref|YP_005380965.1| - 0.048 13.5 0.0 0.091 12.6 0.0 1.4 1 0 0 1 1 1 0 CdvA-like coiled-coil domain CDC50 PF03381.15 gi|383320124|ref|YP_005380965.1| - 0.055 13.0 0.0 0.081 12.4 0.0 1.2 1 0 0 1 1 1 0 LEM3 (ligand-effect modulator 3) family / CDC50 family DUF3987 PF13148.6 gi|383320124|ref|YP_005380965.1| - 0.31 10.0 2.3 1 8.3 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3987) Peripla_BP_2 PF01497.18 gi|383320125|ref|YP_005380966.1| - 2e-33 115.9 0.3 2.5e-33 115.6 0.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|383320126|ref|YP_005380967.1| - 2.2e-30 106.0 0.0 3.1e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein PGF-CTERM PF18204.1 gi|383320127|ref|YP_005380968.1| - 0.015 15.3 0.2 0.029 14.4 0.2 1.5 1 0 0 1 1 1 0 PGF-CTERM motif Peripla_BP_2 PF01497.18 gi|383320128|ref|YP_005380969.1| - 2.8e-31 108.9 0.1 3.9e-31 108.5 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF2877 PF11392.8 gi|383320128|ref|YP_005380969.1| - 0.094 13.4 0.1 0.23 12.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2877) ABC2_membrane PF01061.24 gi|383320129|ref|YP_005380970.1| - 2.1e-28 99.2 21.3 2.1e-28 99.2 21.3 1.8 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|383320129|ref|YP_005380970.1| - 1.5e-12 47.3 31.7 1.9e-12 47.0 31.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein HEPN_LA2681 PF18733.1 gi|383320129|ref|YP_005380970.1| - 0.11 11.8 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 LA2681-like HEPN ABC_tran PF00005.27 gi|383320130|ref|YP_005380971.1| - 7.6e-30 104.2 0.0 1.3e-29 103.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320130|ref|YP_005380971.1| - 3.5e-12 46.7 0.1 1.3e-07 31.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|383320130|ref|YP_005380971.1| - 7.1e-07 29.9 0.0 1.4e-06 28.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|383320130|ref|YP_005380971.1| - 6.4e-05 23.5 0.0 9.2e-05 23.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|383320130|ref|YP_005380971.1| - 0.00012 21.9 0.0 0.014 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|383320130|ref|YP_005380971.1| - 0.00025 20.7 0.0 0.00053 19.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|383320130|ref|YP_005380971.1| - 0.0045 16.5 0.0 0.22 10.9 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_PrkA PF08298.11 gi|383320130|ref|YP_005380971.1| - 0.0051 15.8 0.0 0.0078 15.2 0.0 1.2 1 0 0 1 1 1 1 PrkA AAA domain KdpD PF02702.17 gi|383320130|ref|YP_005380971.1| - 0.015 14.8 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain SurA_N_3 PF13624.6 gi|383320130|ref|YP_005380971.1| - 0.019 14.8 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 SurA N-terminal domain AAA PF00004.29 gi|383320130|ref|YP_005380971.1| - 0.048 14.1 0.3 0.74 10.2 0.3 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|383320130|ref|YP_005380971.1| - 0.061 13.7 0.0 0.099 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|383320130|ref|YP_005380971.1| - 0.085 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 gi|383320131|ref|YP_005380972.1| - 1.7e-33 116.0 0.0 2.7e-33 115.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320131|ref|YP_005380972.1| - 7.9e-08 32.5 0.1 9e-05 22.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|383320131|ref|YP_005380972.1| - 2.5e-07 30.7 0.0 5e-07 29.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|383320131|ref|YP_005380972.1| - 7.9e-07 28.7 0.0 2.7e-06 27.0 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|383320131|ref|YP_005380972.1| - 1e-06 28.4 0.4 5.8e-05 22.6 0.4 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|383320131|ref|YP_005380972.1| - 1.7e-05 25.5 0.2 2.3e-05 25.0 0.2 1.5 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|383320131|ref|YP_005380972.1| - 0.00037 20.5 0.0 0.00044 20.2 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|383320131|ref|YP_005380972.1| - 0.0015 18.5 0.0 0.0035 17.3 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|383320131|ref|YP_005380972.1| - 0.0019 18.1 0.0 0.02 14.8 0.0 2.1 2 0 0 2 2 2 1 Rad17 P-loop domain SRP54 PF00448.22 gi|383320131|ref|YP_005380972.1| - 0.0029 17.3 0.0 0.0064 16.1 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA PF00004.29 gi|383320131|ref|YP_005380972.1| - 0.0042 17.5 0.0 0.011 16.2 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|383320131|ref|YP_005380972.1| - 0.0081 16.6 0.0 0.012 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|383320131|ref|YP_005380972.1| - 0.016 15.4 0.1 0.14 12.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|383320131|ref|YP_005380972.1| - 0.028 14.8 0.0 0.19 12.1 0.0 2.2 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.22 gi|383320131|ref|YP_005380972.1| - 0.035 13.3 0.1 0.085 12.0 0.1 1.6 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.6 gi|383320131|ref|YP_005380972.1| - 0.037 13.7 0.0 0.078 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|383320131|ref|YP_005380972.1| - 0.039 14.0 0.0 0.092 12.8 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_PrkA PF08298.11 gi|383320131|ref|YP_005380972.1| - 0.042 12.8 0.0 0.071 12.0 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain Mg_chelatase PF01078.21 gi|383320131|ref|YP_005380972.1| - 0.045 13.1 0.0 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|383320131|ref|YP_005380972.1| - 0.046 14.0 0.1 0.078 13.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|383320131|ref|YP_005380972.1| - 0.057 13.3 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_27 PF13514.6 gi|383320131|ref|YP_005380972.1| - 0.063 12.9 0.0 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|383320131|ref|YP_005380972.1| - 0.079 11.7 0.1 0.13 10.9 0.0 1.3 1 1 0 1 1 1 0 RNA12 protein SbcCD_C PF13558.6 gi|383320131|ref|YP_005380972.1| - 0.084 13.1 0.1 1.9 8.8 0.1 2.6 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.15 gi|383320131|ref|YP_005380972.1| - 0.11 12.4 0.0 0.29 11.0 0.0 1.7 1 0 0 1 1 1 0 NTPase TsaE PF02367.17 gi|383320131|ref|YP_005380972.1| - 0.14 12.1 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|383320131|ref|YP_005380972.1| - 0.16 12.0 0.3 0.45 10.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) FecCD PF01032.18 gi|383320132|ref|YP_005380973.1| - 3.5e-90 302.2 35.0 4.3e-90 301.9 35.0 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|383320132|ref|YP_005380973.1| - 5e-07 29.5 21.0 5e-07 29.5 21.0 2.4 1 1 2 3 3 3 1 ABC 3 transport family RhodobacterPufX PF11511.8 gi|383320132|ref|YP_005380973.1| - 0.027 14.1 1.4 0.027 14.1 1.4 3.2 3 0 0 3 3 3 0 Intrinsic membrane protein PufX Phage_holin_3_1 PF05106.12 gi|383320132|ref|YP_005380973.1| - 1.1 9.8 8.3 1.1 9.7 2.7 2.8 2 0 0 2 2 2 0 Phage holin family (Lysis protein S) GNVR PF13807.6 gi|383320132|ref|YP_005380973.1| - 1.7 8.6 4.3 1.8 8.6 0.4 3.1 2 1 0 2 2 2 0 G-rich domain on putative tyrosine kinase AAA_lid_2 PF17863.1 gi|383320133|ref|YP_005380974.1| - 2.2e-24 85.1 0.4 4.8e-24 84.0 0.4 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|383320133|ref|YP_005380974.1| - 2.4e-11 43.8 0.1 1.4e-06 28.4 0.0 2.7 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|383320133|ref|YP_005380974.1| - 3.5e-11 42.9 0.4 9.7e-10 38.2 0.3 2.6 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|383320133|ref|YP_005380974.1| - 0.0006 19.0 0.4 0.13 11.3 0.0 3.3 3 2 0 3 3 3 1 MCM P-loop domain AAA_3 PF07726.11 gi|383320133|ref|YP_005380974.1| - 0.00083 19.2 0.0 0.082 12.8 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|383320133|ref|YP_005380974.1| - 0.003 18.0 0.0 0.0099 16.3 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|383320133|ref|YP_005380974.1| - 0.0064 16.2 0.0 1.9 8.2 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 gi|383320133|ref|YP_005380974.1| - 0.0089 16.3 0.0 0.039 14.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|383320133|ref|YP_005380974.1| - 0.027 14.9 0.3 0.067 13.6 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain Zip PF02535.22 gi|383320133|ref|YP_005380974.1| - 4.7 6.3 4.5 6.6 5.8 4.5 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter VWA_2 PF13519.6 gi|383320134|ref|YP_005380975.1| - 1.5e-14 54.5 0.0 2.9e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|383320134|ref|YP_005380975.1| - 2e-07 31.5 0.0 2.7e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|383320134|ref|YP_005380975.1| - 0.0012 18.8 0.0 0.0019 18.1 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|383320134|ref|YP_005380975.1| - 0.0076 15.7 0.0 0.013 14.9 0.0 1.4 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein dCache_1 PF02743.18 gi|383320134|ref|YP_005380975.1| - 0.18 11.5 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 Cache domain ABC_tran PF00005.27 gi|383320135|ref|YP_005380976.1| - 1.8e-33 116.0 0.0 3.4e-33 115.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320135|ref|YP_005380976.1| - 4.4e-17 62.8 0.4 7e-10 39.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383320135|ref|YP_005380976.1| - 5.2e-09 35.9 0.2 9.5e-08 31.7 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|383320135|ref|YP_005380976.1| - 1e-08 35.3 0.0 0.0023 17.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|383320135|ref|YP_005380976.1| - 6.9e-06 25.7 0.0 1.5e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|383320135|ref|YP_005380976.1| - 0.00013 22.5 0.0 0.00018 22.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|383320135|ref|YP_005380976.1| - 0.0097 15.5 0.1 0.021 14.4 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|383320135|ref|YP_005380976.1| - 0.03 14.5 0.0 0.057 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|383320135|ref|YP_005380976.1| - 0.039 14.3 0.0 0.61 10.5 0.0 2.3 2 0 0 2 2 2 0 RNA helicase DLIC PF05783.11 gi|383320135|ref|YP_005380976.1| - 0.077 11.8 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) SbcCD_C PF13558.6 gi|383320135|ref|YP_005380976.1| - 0.088 13.1 0.0 0.57 10.4 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|383320135|ref|YP_005380976.1| - 0.17 12.4 2.1 0.31 11.6 0.1 2.4 2 1 0 2 2 2 0 AAA domain CbiQ PF02361.16 gi|383320136|ref|YP_005380977.1| - 1.9e-34 119.2 9.3 3e-34 118.6 9.3 1.3 1 0 0 1 1 1 1 Cobalt transport protein FUSC-like PF12805.7 gi|383320136|ref|YP_005380977.1| - 0.84 8.7 6.2 3.9 6.5 6.2 1.9 2 0 0 2 2 2 0 FUSC-like inner membrane protein yccS DUF2244 PF10003.9 gi|383320136|ref|YP_005380977.1| - 1.9 8.2 7.0 5.1 6.8 7.0 1.8 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) LEA_5 PF00477.17 gi|383320137|ref|YP_005380978.1| - 1.6e-06 28.5 17.6 0.0026 18.2 5.3 2.0 1 1 1 2 2 2 2 Small hydrophilic plant seed protein KGG PF10685.9 gi|383320137|ref|YP_005380978.1| - 0.0069 16.6 26.5 0.046 14.0 0.4 4.3 4 0 0 4 4 4 3 Stress-induced bacterial acidophilic repeat motif SASP PF00269.20 gi|383320137|ref|YP_005380978.1| - 0.8 9.8 12.0 1.7 8.7 0.3 2.9 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type Mfp-3 PF04202.13 gi|383320137|ref|YP_005380978.1| - 8.8 6.8 7.8 4.1 7.9 2.8 2.1 1 1 1 2 2 2 0 Foot protein 3 Na_H_Exchanger PF00999.21 gi|383320138|ref|YP_005380979.1| - 1.9e-49 168.5 46.9 2.4e-49 168.1 46.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family AP_endonuc_2 PF01261.24 gi|383320139|ref|YP_005380980.1| - 8.9e-14 51.4 0.0 1.4e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel ABC_tran PF00005.27 gi|383320140|ref|YP_005380981.1| - 8.5e-31 107.3 0.0 1.6e-30 106.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320140|ref|YP_005380981.1| - 4.9e-11 43.0 1.4 2.9e-05 24.0 0.4 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|383320140|ref|YP_005380981.1| - 1.8e-06 27.6 0.1 3.8e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|383320140|ref|YP_005380981.1| - 3e-06 26.8 0.2 0.0028 17.1 0.1 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|383320140|ref|YP_005380981.1| - 9.6e-05 23.0 0.0 0.00016 22.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|383320140|ref|YP_005380981.1| - 0.00015 21.6 0.0 0.00029 20.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|383320140|ref|YP_005380981.1| - 0.0007 20.0 0.2 0.0019 18.6 0.1 1.7 2 0 0 2 2 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|383320140|ref|YP_005380981.1| - 0.001 19.6 0.5 0.0042 17.6 0.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|383320140|ref|YP_005380981.1| - 0.0036 17.6 0.0 0.0099 16.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|383320140|ref|YP_005380981.1| - 0.0041 16.8 0.0 0.013 15.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.25 gi|383320140|ref|YP_005380981.1| - 0.0056 16.4 0.2 0.01 15.5 0.0 1.5 2 0 0 2 2 1 1 ATP synthase alpha/beta family, nucleotide-binding domain MeaB PF03308.16 gi|383320140|ref|YP_005380981.1| - 0.008 15.2 0.1 0.016 14.2 0.1 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|383320140|ref|YP_005380981.1| - 0.0093 16.0 0.0 0.026 14.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|383320140|ref|YP_005380981.1| - 0.011 15.8 0.2 0.071 13.2 0.0 2.4 3 0 0 3 3 3 0 50S ribosome-binding GTPase T2SSE PF00437.20 gi|383320140|ref|YP_005380981.1| - 0.011 14.8 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|383320140|ref|YP_005380981.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase ATPase_2 PF01637.18 gi|383320140|ref|YP_005380981.1| - 0.014 15.3 0.0 0.2 11.5 0.0 2.3 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_27 PF13514.6 gi|383320140|ref|YP_005380981.1| - 0.018 14.7 0.0 0.036 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|383320140|ref|YP_005380981.1| - 0.02 14.9 0.2 0.038 13.9 0.2 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain ATP_bind_1 PF03029.17 gi|383320140|ref|YP_005380981.1| - 0.02 14.7 0.6 0.042 13.6 0.1 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|383320140|ref|YP_005380981.1| - 0.034 14.6 0.2 0.3 11.5 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Adeno_IVa2 PF02456.15 gi|383320140|ref|YP_005380981.1| - 0.035 12.9 0.1 0.074 11.8 0.0 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_22 PF13401.6 gi|383320140|ref|YP_005380981.1| - 0.04 14.2 1.4 0.05 13.9 0.1 1.8 2 0 0 2 2 1 0 AAA domain SRP54 PF00448.22 gi|383320140|ref|YP_005380981.1| - 0.057 13.0 0.1 1.4 8.5 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain KAP_NTPase PF07693.14 gi|383320140|ref|YP_005380981.1| - 0.06 12.6 0.0 0.086 12.1 0.0 1.7 1 1 0 1 1 1 0 KAP family P-loop domain PIF1 PF05970.14 gi|383320140|ref|YP_005380981.1| - 0.08 12.1 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase IstB_IS21 PF01695.17 gi|383320140|ref|YP_005380981.1| - 0.08 12.7 0.4 0.25 11.1 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|383320140|ref|YP_005380981.1| - 0.082 13.1 0.1 0.27 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|383320140|ref|YP_005380981.1| - 0.085 11.6 0.1 0.43 9.3 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.21 gi|383320140|ref|YP_005380981.1| - 0.1 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|383320140|ref|YP_005380981.1| - 0.11 12.3 0.5 0.2 11.3 0.1 1.7 2 0 0 2 2 1 0 AAA domain Guanylate_kin PF00625.21 gi|383320140|ref|YP_005380981.1| - 0.12 12.1 0.1 12 5.5 0.1 2.4 2 0 0 2 2 2 0 Guanylate kinase NACHT PF05729.12 gi|383320140|ref|YP_005380981.1| - 0.14 12.1 0.1 0.27 11.1 0.1 1.5 1 0 0 1 1 1 0 NACHT domain DUF2813 PF11398.8 gi|383320140|ref|YP_005380981.1| - 0.17 11.1 0.0 0.26 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_13 PF13166.6 gi|383320140|ref|YP_005380981.1| - 0.18 10.4 0.4 5.9 5.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain LpxK PF02606.14 gi|383320140|ref|YP_005380981.1| - 0.2 10.7 0.5 4.8 6.2 0.1 2.6 3 0 0 3 3 3 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_19 PF13245.6 gi|383320140|ref|YP_005380981.1| - 0.49 10.7 3.2 1.4 9.2 0.3 2.6 2 1 0 2 2 2 0 AAA domain FecCD PF01032.18 gi|383320141|ref|YP_005380982.1| - 9.9e-90 300.7 43.9 1.3e-89 300.3 43.9 1.2 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|383320141|ref|YP_005380982.1| - 0.0014 18.2 24.5 0.0014 18.2 24.5 2.0 2 1 0 2 2 2 1 ABC 3 transport family Cys_rich_FGFR PF00839.17 gi|383320142|ref|YP_005380983.1| - 0.16 12.2 1.2 0.42 10.8 0.3 2.3 2 0 0 2 2 2 0 Cysteine rich repeat tRNA_SAD PF07973.14 gi|383320143|ref|YP_005380984.1| - 7.1e-10 38.8 2.0 1.8e-09 37.5 2.0 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|383320143|ref|YP_005380984.1| - 2.7e-07 29.5 0.0 4.6e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|383320143|ref|YP_005380984.1| - 1.6e-06 28.6 0.2 3.1e-06 27.7 0.2 1.5 1 0 0 1 1 1 1 DHHA1 domain Cupin_2 PF07883.11 gi|383320144|ref|YP_005380985.1| - 3.2e-13 49.2 0.0 4.6e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|383320144|ref|YP_005380985.1| - 4.6e-06 26.6 0.0 5.9e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|383320144|ref|YP_005380985.1| - 3.1e-05 23.6 0.0 5.8e-05 22.7 0.0 1.5 1 1 1 2 2 2 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|383320144|ref|YP_005380985.1| - 7.1e-05 22.5 0.0 9.9e-05 22.0 0.0 1.3 1 1 0 1 1 1 1 Cupin Cupin_6 PF12852.7 gi|383320144|ref|YP_005380985.1| - 0.0003 20.6 0.0 0.00036 20.3 0.0 1.1 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|383320144|ref|YP_005380985.1| - 0.0013 18.6 0.0 0.0014 18.5 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase EutQ PF06249.12 gi|383320144|ref|YP_005380985.1| - 0.013 15.3 0.0 0.019 14.7 0.0 1.3 1 1 0 1 1 1 0 Ethanolamine utilisation protein EutQ Ppnp PF06865.11 gi|383320144|ref|YP_005380985.1| - 0.016 15.6 0.0 0.023 15.1 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase Pirin_C PF05726.13 gi|383320144|ref|YP_005380985.1| - 0.024 15.0 0.0 0.038 14.4 0.0 1.3 1 1 0 1 1 1 0 Pirin C-terminal cupin domain Ectoine_synth PF06339.12 gi|383320144|ref|YP_005380985.1| - 0.063 13.5 0.0 0.079 13.2 0.0 1.3 1 0 0 1 1 1 0 Ectoine synthase AraC_binding_2 PF14525.6 gi|383320144|ref|YP_005380985.1| - 0.094 12.4 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain HutD PF05962.11 gi|383320144|ref|YP_005380985.1| - 0.15 12.0 0.0 0.18 11.8 0.0 1.1 1 0 0 1 1 1 0 HutD Cupin_7 PF12973.7 gi|383320144|ref|YP_005380985.1| - 0.16 11.9 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain FAD_binding_3 PF01494.19 gi|383320145|ref|YP_005380986.1| - 3.5e-16 59.4 0.6 7.3e-07 28.7 0.0 3.0 3 0 0 3 3 3 3 FAD binding domain FAD_binding_2 PF00890.24 gi|383320145|ref|YP_005380986.1| - 1.1e-12 47.8 1.5 3.1e-09 36.4 0.1 2.9 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 gi|383320145|ref|YP_005380986.1| - 7.5e-11 42.2 2.2 2.1e-06 27.6 0.3 2.5 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|383320145|ref|YP_005380986.1| - 6.6e-10 38.9 2.2 6.6e-10 38.9 2.2 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|383320145|ref|YP_005380986.1| - 1.8e-08 34.5 0.0 5.3e-08 33.0 0.0 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|383320145|ref|YP_005380986.1| - 5e-08 32.1 0.8 8.4e-08 31.3 0.1 1.8 3 0 0 3 3 3 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|383320145|ref|YP_005380986.1| - 1.8e-07 30.7 0.1 3.7e-07 29.7 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|383320145|ref|YP_005380986.1| - 1.9e-07 30.6 1.8 5e-07 29.1 0.1 2.2 3 0 0 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|383320145|ref|YP_005380986.1| - 2e-06 27.2 0.1 1.2e-05 24.7 0.0 2.2 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|383320145|ref|YP_005380986.1| - 2.2e-05 23.7 0.2 6.5e-05 22.2 0.1 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|383320145|ref|YP_005380986.1| - 0.00013 21.4 0.1 0.0002 20.7 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|383320145|ref|YP_005380986.1| - 0.00033 19.6 0.3 0.012 14.5 0.1 2.2 2 0 0 2 2 2 1 Tryptophan halogenase 3HCDH_N PF02737.18 gi|383320145|ref|YP_005380986.1| - 0.0011 18.9 0.9 0.025 14.5 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|383320145|ref|YP_005380986.1| - 0.003 18.1 1.1 0.012 16.2 0.1 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|383320145|ref|YP_005380986.1| - 0.0063 15.8 0.4 0.017 14.4 0.0 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|383320145|ref|YP_005380986.1| - 0.14 12.4 0.3 0.35 11.1 0.0 1.8 2 0 0 2 2 1 0 TrkA-N domain Pentapeptide PF00805.22 gi|383320146|ref|YP_005380987.1| - 1.2e-25 88.7 5.2 5.8e-08 32.2 0.0 5.5 2 1 4 6 6 6 6 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|383320146|ref|YP_005380987.1| - 3.3e-19 68.8 7.4 1e-09 38.4 0.7 3.6 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|383320146|ref|YP_005380987.1| - 4.4e-15 55.6 0.0 3.1e-05 24.0 0.0 4.4 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) Phage_integrase PF00589.22 gi|383320147|ref|YP_005380988.1| - 1.3e-40 139.0 0.4 1.1e-39 136.0 0.2 2.1 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|383320147|ref|YP_005380988.1| - 4.3e-17 62.4 0.2 1.3e-15 57.6 0.4 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|383320147|ref|YP_005380988.1| - 4.3e-09 36.6 1.4 1e-08 35.4 1.0 1.8 2 0 0 2 2 2 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|383320147|ref|YP_005380988.1| - 2.6e-08 34.0 0.0 2.1e-07 31.1 0.0 2.2 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.6 gi|383320147|ref|YP_005380988.1| - 0.00021 21.5 0.3 0.00049 20.3 0.3 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.7 gi|383320147|ref|YP_005380988.1| - 0.02 15.0 0.1 0.033 14.3 0.1 1.4 1 0 0 1 1 1 0 Integrase DUF3435 PF11917.8 gi|383320147|ref|YP_005380988.1| - 0.02 13.8 0.1 0.052 12.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3435) DUF4441 PF14536.6 gi|383320147|ref|YP_005380988.1| - 0.06 13.5 3.2 0.27 11.4 2.3 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4441) DUF3853 PF12964.7 gi|383320147|ref|YP_005380988.1| - 0.089 13.0 0.1 0.57 10.4 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3853) CxxCxxCC PF03692.15 gi|383320148|ref|YP_005380989.1| - 5.2e-11 43.1 1.6 9.7e-11 42.2 1.6 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Radical_SAM_N PF08497.10 gi|383320149|ref|YP_005380990.1| - 9.8e-130 432.1 0.4 1.5e-129 431.6 0.0 1.5 2 0 0 2 2 2 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|383320149|ref|YP_005380990.1| - 1.4e-32 113.1 0.1 3.2e-32 111.9 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|383320149|ref|YP_005380990.1| - 2.9e-16 60.3 0.1 4.8e-16 59.6 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|383320149|ref|YP_005380990.1| - 0.00098 19.2 0.0 0.26 11.3 0.0 2.6 2 0 0 2 2 2 2 B12 binding domain MS_channel PF00924.18 gi|383320150|ref|YP_005380991.1| - 3.2e-20 72.5 4.3 3.2e-20 72.5 4.3 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel FtsX PF02687.21 gi|383320150|ref|YP_005380991.1| - 0.71 10.4 13.3 5.8 7.5 12.3 2.6 2 1 1 3 3 3 0 FtsX-like permease family AA_permease_2 PF13520.6 gi|383320151|ref|YP_005380992.1| - 1.3e-44 152.8 58.5 1.5e-44 152.5 58.5 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|383320151|ref|YP_005380992.1| - 5.7e-28 97.7 51.8 1.1e-27 96.8 51.8 1.4 1 1 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|383320151|ref|YP_005380992.1| - 4.6e-06 27.2 0.1 8.3e-06 26.4 0.1 1.4 1 0 0 1 1 1 1 Universal stress protein family SPC25 PF06703.11 gi|383320151|ref|YP_005380992.1| - 1.7 8.4 5.1 3 7.6 0.1 3.1 2 1 1 3 3 3 0 Microsomal signal peptidase 25 kDa subunit (SPC25) OMPdecase PF00215.24 gi|383320153|ref|YP_005380994.1| - 5.1e-43 147.3 0.2 6.4e-43 146.9 0.2 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.17 gi|383320153|ref|YP_005380994.1| - 0.021 14.3 0.1 0.22 11.0 0.1 2.0 1 1 0 2 2 2 0 PcrB family Ribul_P_3_epim PF00834.19 gi|383320153|ref|YP_005380994.1| - 0.059 12.7 0.1 0.18 11.2 0.1 1.8 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.18 gi|383320153|ref|YP_005380994.1| - 0.099 11.6 2.1 0.27 10.2 2.1 1.8 1 1 0 1 1 1 0 FMN-dependent dehydrogenase PEP_mutase PF13714.6 gi|383320153|ref|YP_005380994.1| - 0.21 11.0 1.8 4.8 6.6 0.1 2.5 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase Peptidase_S49 PF01343.18 gi|383320154|ref|YP_005380995.1| - 1.7e-47 161.2 0.3 2.4e-47 160.7 0.3 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|383320154|ref|YP_005380995.1| - 9.5e-06 25.6 0.2 0.0011 18.9 0.2 2.2 2 0 0 2 2 2 2 Clp protease SDH_sah PF01972.16 gi|383320154|ref|YP_005380995.1| - 0.00017 20.7 0.4 0.00027 20.1 0.4 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Succ_CoA_lig PF13607.6 gi|383320154|ref|YP_005380995.1| - 0.025 14.4 0.3 0.043 13.6 0.3 1.4 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain MC1 PF05854.11 gi|383320155|ref|YP_005380996.1| - 5.8e-30 103.4 0.2 8.9e-30 102.8 0.2 1.2 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 DBP10CT PF08147.12 gi|383320156|ref|YP_005380997.1| - 0.5 10.7 4.1 2.8 8.3 0.4 2.3 2 0 0 2 2 2 0 DBP10CT (NUC160) domain Peptidase_MA_2 PF13485.6 gi|383320157|ref|YP_005380998.1| - 1.2e-05 25.2 0.0 1.6e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase MA superfamily Pept_tRNA_hydro PF01195.19 gi|383320157|ref|YP_005380998.1| - 0.0084 16.1 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase DUF1570 PF07607.11 gi|383320157|ref|YP_005380998.1| - 0.022 15.0 0.0 0.18 12.1 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1570) SprT-like PF10263.9 gi|383320157|ref|YP_005380998.1| - 0.067 13.1 0.0 0.098 12.5 0.0 1.4 1 0 0 1 1 1 0 SprT-like family Peptidase_M48 PF01435.18 gi|383320157|ref|YP_005380998.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M48 Inhibitor_I42 PF09394.10 gi|383320158|ref|YP_005380999.1| - 4.1e-05 23.9 0.0 5.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 MTS PF05175.14 gi|383320159|ref|YP_005381000.1| - 3.2e-15 56.1 0.0 4.4e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|383320159|ref|YP_005381000.1| - 6.2e-13 48.8 0.0 8e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|383320159|ref|YP_005381000.1| - 1.3e-10 41.9 0.0 2.1e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383320159|ref|YP_005381000.1| - 7.3e-09 35.6 0.1 1e-08 35.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|383320159|ref|YP_005381000.1| - 6.8e-08 32.4 1.8 7.1e-07 29.1 1.8 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|383320159|ref|YP_005381000.1| - 1.3e-06 29.0 0.0 2.6e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|383320159|ref|YP_005381000.1| - 3.1e-05 23.6 0.0 4.8e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF43 PF01861.16 gi|383320159|ref|YP_005381000.1| - 0.00073 18.8 0.0 0.00099 18.4 0.0 1.1 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Cons_hypoth95 PF03602.15 gi|383320159|ref|YP_005381000.1| - 0.0035 17.0 0.0 0.0062 16.2 0.0 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|383320159|ref|YP_005381000.1| - 0.0049 17.6 0.0 0.0085 16.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383320159|ref|YP_005381000.1| - 0.014 15.3 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|383320159|ref|YP_005381000.1| - 0.03 14.2 0.1 0.05 13.5 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|383320159|ref|YP_005381000.1| - 0.035 14.1 0.0 0.05 13.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|383320159|ref|YP_005381000.1| - 0.085 12.6 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AviRa PF11599.8 gi|383320159|ref|YP_005381000.1| - 0.12 11.9 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Methyltr_RsmB-F PF01189.17 gi|383320159|ref|YP_005381000.1| - 0.13 11.9 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F ECR1_N PF14382.6 gi|383320160|ref|YP_005381001.1| - 1e-12 47.6 0.3 1.7e-12 46.9 0.3 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|383320160|ref|YP_005381001.1| - 3.2e-08 34.1 0.4 6.4e-08 33.2 0.4 1.5 1 1 0 1 1 1 1 Exosome component EXOSC1/CSL4 S1 PF00575.23 gi|383320160|ref|YP_005381001.1| - 0.00031 21.0 1.0 0.047 14.0 1.0 2.4 1 1 0 1 1 1 1 S1 RNA binding domain Zn_Tnp_IS91 PF14319.6 gi|383320160|ref|YP_005381001.1| - 0.0085 16.1 0.1 0.013 15.6 0.1 1.2 1 0 0 1 1 1 1 Transposase zinc-binding domain HypA PF01155.19 gi|383320160|ref|YP_005381001.1| - 0.015 15.3 0.1 0.021 14.8 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L27 PF01016.19 gi|383320160|ref|YP_005381001.1| - 0.085 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 Ribosomal L27 protein RNA_pol_L_2 PF13656.6 gi|383320161|ref|YP_005381002.1| - 7e-22 77.0 0.0 8.3e-22 76.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|383320161|ref|YP_005381002.1| - 1.4e-07 30.9 0.0 3e-07 29.8 0.0 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Trm56 PF01994.16 gi|383320162|ref|YP_005381003.1| - 1.6e-48 163.6 0.0 1.9e-48 163.3 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 PrpR_N PF06506.11 gi|383320162|ref|YP_005381003.1| - 0.19 11.3 0.1 6.2 6.4 0.0 2.1 2 0 0 2 2 2 0 Propionate catabolism activator ATP-grasp_3 PF02655.14 gi|383320163|ref|YP_005381004.1| - 1.4e-38 132.5 0.0 1.9e-38 132.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|383320163|ref|YP_005381004.1| - 5.3e-09 35.9 0.0 1.3e-08 34.7 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.17 gi|383320163|ref|YP_005381004.1| - 0.0013 18.3 0.0 0.057 12.9 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|383320163|ref|YP_005381004.1| - 0.018 14.3 0.0 0.032 13.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp RimK PF08443.11 gi|383320163|ref|YP_005381004.1| - 0.02 14.5 0.0 0.082 12.5 0.0 1.9 1 1 0 1 1 1 0 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|383320163|ref|YP_005381004.1| - 0.14 11.7 0.0 0.37 10.3 0.0 1.7 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|383320163|ref|YP_005381004.1| - 0.17 11.5 0.0 1.1 8.8 0.0 1.9 2 0 0 2 2 2 0 ATP-grasp domain TFIIE_alpha PF02002.17 gi|383320164|ref|YP_005381005.1| - 6.3e-19 67.8 3.5 9e-19 67.3 3.5 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HD PF01966.22 gi|383320165|ref|YP_005381006.1| - 6.4e-17 61.9 1.1 1.3e-16 61.0 1.1 1.5 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|383320165|ref|YP_005381006.1| - 0.0047 16.4 0.1 0.44 10.0 0.1 2.3 1 1 1 2 2 2 2 HDOD domain DUF3211 PF11485.8 gi|383320166|ref|YP_005381007.1| - 0.069 13.4 0.0 0.073 13.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3211) ACT PF01842.25 gi|383320167|ref|YP_005381008.1| - 0.0045 16.7 1.3 0.036 13.8 0.2 2.7 1 1 1 2 2 2 1 ACT domain Radical_SAM PF04055.21 gi|383320168|ref|YP_005381009.1| - 0.00022 21.6 0.0 0.00042 20.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF5591 PF17884.1 gi|383320169|ref|YP_005381010.1| - 4.2e-52 176.1 0.0 6.9e-52 175.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT PF01702.18 gi|383320169|ref|YP_005381010.1| - 2.3e-17 63.2 0.0 5.9e-17 61.8 0.0 1.6 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.6 gi|383320169|ref|YP_005381010.1| - 8.7e-13 48.2 0.0 2e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|383320169|ref|YP_005381010.1| - 3e-10 39.9 0.1 6.8e-10 38.8 0.1 1.5 1 0 0 1 1 1 1 PUA domain LEA_5 PF00477.17 gi|383320170|ref|YP_005381011.1| - 0.0043 17.5 9.1 0.0061 17.0 9.1 1.4 1 1 0 1 1 1 1 Small hydrophilic plant seed protein SASP PF00269.20 gi|383320170|ref|YP_005381011.1| - 0.021 14.8 8.1 0.36 10.9 1.1 2.1 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type KGG PF10685.9 gi|383320170|ref|YP_005381011.1| - 0.037 14.3 11.9 0.13 12.6 1.0 2.8 2 1 0 2 2 2 0 Stress-induced bacterial acidophilic repeat motif ESM4 PF15952.5 gi|383320171|ref|YP_005381012.1| - 0.052 14.0 0.4 0.09 13.2 0.4 1.3 1 0 0 1 1 1 0 Enhancer of split M4 family CarboxypepD_reg PF13620.6 gi|383320172|ref|YP_005381013.1| - 8.5e-08 32.4 1.1 2.5e-06 27.7 0.5 2.7 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|383320172|ref|YP_005381013.1| - 8.1e-06 25.8 1.9 6.5e-05 22.9 0.2 2.5 3 0 0 3 3 3 1 CarboxypepD_reg-like domain DUF4198 PF10670.9 gi|383320172|ref|YP_005381013.1| - 0.00084 19.8 0.0 0.0032 17.9 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4198) Dioxygenase_C PF00775.21 gi|383320172|ref|YP_005381013.1| - 0.021 14.3 0.1 0.033 13.6 0.1 1.2 1 0 0 1 1 1 0 Dioxygenase Big_3_5 PF16640.5 gi|383320172|ref|YP_005381013.1| - 1.2 9.3 7.6 0.85 9.8 4.2 2.4 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 3) PK PF00224.21 gi|383320173|ref|YP_005381014.1| - 6.8e-126 419.8 7.9 1.1e-125 419.1 7.9 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|383320173|ref|YP_005381014.1| - 1.3e-33 115.7 0.1 5.9e-33 113.6 0.0 2.2 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|383320173|ref|YP_005381014.1| - 5.9e-17 61.2 1.6 1.5e-16 59.9 0.4 2.4 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|383320173|ref|YP_005381014.1| - 0.0002 20.5 0.9 0.0002 20.5 0.9 1.8 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Epimerase PF01370.21 gi|383320174|ref|YP_005381015.1| - 8e-49 166.3 0.0 9.4e-49 166.0 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|383320174|ref|YP_005381015.1| - 9.8e-45 153.4 0.0 3.4e-44 151.6 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|383320174|ref|YP_005381015.1| - 1.7e-17 63.4 0.0 2.2e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|383320174|ref|YP_005381015.1| - 2.8e-17 62.8 0.0 1.4e-16 60.5 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|383320174|ref|YP_005381015.1| - 2.3e-12 46.6 0.0 2.7e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|383320174|ref|YP_005381015.1| - 1.4e-10 40.8 0.3 7.4e-05 22.0 0.0 2.6 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|383320174|ref|YP_005381015.1| - 3.2e-08 33.7 0.0 5.9e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|383320174|ref|YP_005381015.1| - 1.9e-05 24.2 0.0 0.0012 18.4 0.0 2.2 2 0 0 2 2 2 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|383320174|ref|YP_005381015.1| - 0.022 15.0 0.0 0.04 14.2 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|383320174|ref|YP_005381015.1| - 0.13 12.5 0.0 0.29 11.4 0.0 1.5 1 1 0 1 1 1 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|383320174|ref|YP_005381015.1| - 0.14 12.6 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding RIO1 PF01163.22 gi|383320175|ref|YP_005381016.1| - 2.6e-67 226.1 0.0 3.6e-67 225.6 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|383320175|ref|YP_005381016.1| - 0.00017 21.6 0.0 0.0035 17.3 0.0 2.4 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|383320175|ref|YP_005381016.1| - 0.00022 20.7 0.0 0.00048 19.6 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|383320175|ref|YP_005381016.1| - 0.0011 17.9 0.0 0.0016 17.3 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase Kdo PF06293.14 gi|383320175|ref|YP_005381016.1| - 0.038 13.4 0.0 0.54 9.6 0.0 2.1 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.17 gi|383320175|ref|YP_005381016.1| - 0.045 13.0 0.0 0.081 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein tyrosine kinase KH_1 PF00013.29 gi|383320176|ref|YP_005381017.1| - 2.2e-16 59.4 5.9 1.1e-08 34.7 0.6 2.2 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|383320176|ref|YP_005381017.1| - 0.0004 20.1 5.2 0.042 13.7 0.4 2.5 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|383320176|ref|YP_005381017.1| - 0.059 13.2 5.0 3 7.8 1.4 2.6 2 0 0 2 2 2 0 KH domain KH_5 PF13184.6 gi|383320176|ref|YP_005381017.1| - 0.47 10.6 4.9 3.4 7.8 1.2 2.4 2 1 0 2 2 2 0 NusA-like KH domain MCM PF00493.23 gi|383320177|ref|YP_005381018.1| - 1.4e-97 325.2 0.0 2.3e-97 324.5 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|383320177|ref|YP_005381018.1| - 7.3e-33 113.1 0.0 1.4e-32 112.2 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|383320177|ref|YP_005381018.1| - 3.5e-30 104.3 0.3 2.9e-29 101.3 0.5 2.3 2 0 0 2 2 2 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|383320177|ref|YP_005381018.1| - 3.5e-07 29.8 0.0 3.8e-05 23.2 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|383320177|ref|YP_005381018.1| - 4.9e-06 26.6 0.0 1.6e-05 24.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM_N PF14551.6 gi|383320177|ref|YP_005381018.1| - 2.6e-05 24.8 0.0 0.0001 22.8 0.0 2.0 2 0 0 2 2 2 1 MCM N-terminal domain Sigma54_activat PF00158.26 gi|383320177|ref|YP_005381018.1| - 0.00021 21.0 0.0 0.00084 19.1 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_3 PF07726.11 gi|383320177|ref|YP_005381018.1| - 0.00026 20.8 0.0 0.00075 19.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|383320177|ref|YP_005381018.1| - 0.036 14.5 0.0 0.12 12.8 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain RuvB_N PF05496.12 gi|383320177|ref|YP_005381018.1| - 0.072 12.8 0.1 0.37 10.5 0.1 2.1 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_2 PF17863.1 gi|383320177|ref|YP_005381018.1| - 0.11 12.3 0.2 0.42 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA lid domain DUF424 PF04242.13 gi|383320178|ref|YP_005381019.1| - 4.9e-30 103.7 0.4 5.4e-30 103.5 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) HTH_24 PF13412.6 gi|383320179|ref|YP_005381020.1| - 3.1e-10 39.4 0.7 7.4e-10 38.2 0.7 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|383320179|ref|YP_005381020.1| - 7.6e-09 35.3 0.0 2.6e-08 33.5 0.1 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|383320179|ref|YP_005381020.1| - 1e-08 35.0 0.0 2e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_DeoR PF08220.12 gi|383320179|ref|YP_005381020.1| - 0.00042 20.0 0.2 0.00088 19.0 0.2 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|383320179|ref|YP_005381020.1| - 0.0009 19.1 0.5 0.0022 17.9 0.2 1.9 2 0 0 2 2 2 1 HTH domain HTH_Mga PF08280.11 gi|383320179|ref|YP_005381020.1| - 0.0018 18.3 0.2 0.0031 17.5 0.2 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain AsnC_trans_reg2 PF17805.1 gi|383320179|ref|YP_005381020.1| - 0.0029 17.7 0.0 0.0057 16.8 0.0 1.6 1 0 0 1 1 1 1 AsnC-like ligand binding domain DUF4349 PF14257.6 gi|383320179|ref|YP_005381020.1| - 0.0041 16.6 0.0 0.0087 15.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) HTH_23 PF13384.6 gi|383320179|ref|YP_005381020.1| - 0.034 13.9 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_20 PF12840.7 gi|383320179|ref|YP_005381020.1| - 0.093 12.8 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain AAA PF00004.29 gi|383320180|ref|YP_005381021.1| - 2.3e-37 128.4 0.0 7.9e-37 126.6 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|383320180|ref|YP_005381021.1| - 3.1e-12 46.1 0.4 7.4e-12 44.9 0.4 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|383320180|ref|YP_005381021.1| - 4.8e-06 26.6 0.0 1.9e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|383320180|ref|YP_005381021.1| - 0.00019 21.7 1.4 0.13 12.6 0.1 3.2 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|383320180|ref|YP_005381021.1| - 0.00063 20.2 0.4 0.042 14.2 0.0 2.7 2 1 0 3 3 3 1 AAA ATPase domain AAA_18 PF13238.6 gi|383320180|ref|YP_005381021.1| - 0.00091 19.8 0.0 0.0043 17.6 0.0 2.2 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|383320180|ref|YP_005381021.1| - 0.0016 18.0 0.0 0.0038 16.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_2 PF07724.14 gi|383320180|ref|YP_005381021.1| - 0.0034 17.5 0.1 0.011 15.9 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|383320180|ref|YP_005381021.1| - 0.0038 17.0 0.0 0.0095 15.7 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|383320180|ref|YP_005381021.1| - 0.0061 15.7 1.1 0.016 14.4 0.0 2.2 3 0 0 3 3 3 1 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|383320180|ref|YP_005381021.1| - 0.0087 16.3 0.0 0.023 14.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain DUF1441 PF07278.11 gi|383320180|ref|YP_005381021.1| - 0.0087 16.0 0.3 0.02 14.8 0.0 1.7 2 0 0 2 2 1 1 Protein of unknown function (DUF1441) AAA_11 PF13086.6 gi|383320180|ref|YP_005381021.1| - 0.014 15.2 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|383320180|ref|YP_005381021.1| - 0.019 15.1 0.0 0.039 14.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|383320180|ref|YP_005381021.1| - 0.02 14.6 0.0 0.049 13.4 0.0 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|383320180|ref|YP_005381021.1| - 0.029 13.8 0.0 0.068 12.5 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|383320180|ref|YP_005381021.1| - 0.053 12.7 0.0 0.15 11.2 0.0 1.7 1 1 0 1 1 1 0 TIP49 P-loop domain AAA_14 PF13173.6 gi|383320180|ref|YP_005381021.1| - 0.071 13.2 0.0 0.22 11.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|383320180|ref|YP_005381021.1| - 0.12 11.9 0.0 1 8.9 0.0 2.2 1 1 1 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|383320180|ref|YP_005381021.1| - 0.15 12.1 0.0 0.38 10.8 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|383320180|ref|YP_005381021.1| - 0.17 12.4 0.0 0.39 11.2 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Arc_PepC_II PF06847.11 gi|383320181|ref|YP_005381022.1| - 9.4e-25 87.0 0.0 1.6e-24 86.2 0.0 1.4 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|383320181|ref|YP_005381022.1| - 3.5e-08 33.8 13.0 3.5e-08 33.8 13.0 2.6 2 1 2 4 4 4 1 Type IV leader peptidase family DUF2070 PF09843.9 gi|383320181|ref|YP_005381022.1| - 9.9 4.3 10.0 13 4.0 10.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Hemerythrin PF01814.23 gi|383320182|ref|YP_005381023.1| - 6.2e-13 49.5 0.0 7.2e-09 36.4 0.0 2.3 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain Flavin_Reduct PF01613.18 gi|383320183|ref|YP_005381024.1| - 2.4e-22 79.7 0.0 2.7e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Fer4 PF00037.27 gi|383320184|ref|YP_005381025.1| - 8.9e-12 44.3 16.8 6e-07 29.0 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383320184|ref|YP_005381025.1| - 1.3e-08 34.5 15.8 0.00027 20.9 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|383320184|ref|YP_005381025.1| - 1.7e-08 34.0 11.0 0.00015 21.6 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383320184|ref|YP_005381025.1| - 1e-06 29.2 12.1 0.00028 21.4 13.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383320184|ref|YP_005381025.1| - 1.8e-06 27.9 25.8 0.00015 21.8 15.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383320184|ref|YP_005381025.1| - 2.6e-06 28.2 13.5 0.0092 16.9 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|383320184|ref|YP_005381025.1| - 6.6e-06 26.2 14.5 1.7e-05 24.8 14.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383320184|ref|YP_005381025.1| - 6.9e-05 22.9 14.5 0.0074 16.4 15.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383320184|ref|YP_005381025.1| - 0.00017 22.2 9.7 0.023 15.4 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|383320184|ref|YP_005381025.1| - 0.0025 18.2 12.5 0.025 15.0 0.9 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383320184|ref|YP_005381025.1| - 0.006 17.0 18.5 0.4 11.3 4.1 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|383320184|ref|YP_005381025.1| - 0.048 14.2 16.1 0.57 10.8 3.5 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383320184|ref|YP_005381025.1| - 0.053 14.1 14.1 0.58 10.7 2.2 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|383320184|ref|YP_005381025.1| - 0.15 12.9 13.3 2.3 9.1 4.1 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|383320184|ref|YP_005381025.1| - 3.1 8.9 19.0 5.1 8.3 4.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.18 gi|383320185|ref|YP_005381026.1| - 9.3e-36 123.5 0.1 1.1e-35 123.3 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.19 gi|383320186|ref|YP_005381027.1| - 1.3e-69 234.5 0.3 1.7e-69 234.1 0.3 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|383320186|ref|YP_005381027.1| - 9.6e-25 86.9 0.1 1.9e-24 85.9 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|383320186|ref|YP_005381027.1| - 0.00023 21.0 0.2 0.00066 19.6 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|383320186|ref|YP_005381027.1| - 0.058 13.0 3.8 0.098 12.3 3.8 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|383320187|ref|YP_005381028.1| - 2.4e-24 85.9 0.5 3.6e-24 85.3 0.5 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPR_17 PF13431.6 gi|383320188|ref|YP_005381029.1| - 1.9e-13 49.8 0.4 0.00012 22.2 0.0 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|383320188|ref|YP_005381029.1| - 4.1e-11 42.4 2.7 0.00053 19.6 0.0 4.2 2 2 3 5 5 5 3 TPR repeat TPR_8 PF13181.6 gi|383320188|ref|YP_005381029.1| - 1.2e-09 37.6 9.9 0.0019 18.3 0.7 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|383320188|ref|YP_005381029.1| - 2.5e-09 36.5 13.8 0.012 15.7 3.4 3.7 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|383320188|ref|YP_005381029.1| - 4.1e-08 33.8 8.9 0.00049 20.7 1.3 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|383320188|ref|YP_005381029.1| - 5.5e-08 33.0 8.0 0.0075 17.0 0.9 4.0 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|383320188|ref|YP_005381029.1| - 5.6e-08 33.2 6.1 0.0011 19.4 0.6 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|383320188|ref|YP_005381029.1| - 1.3e-05 25.4 7.1 0.062 13.6 0.9 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|383320188|ref|YP_005381029.1| - 0.00035 20.3 4.3 0.55 10.1 1.0 3.8 3 1 2 5 5 5 2 Tetratricopeptide repeat TPR_20 PF14561.6 gi|383320188|ref|YP_005381029.1| - 0.0017 18.7 3.5 0.19 12.0 0.6 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|383320188|ref|YP_005381029.1| - 0.03 14.5 5.4 1.7 8.9 1.0 2.1 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 Mad3_BUB1_I PF08311.12 gi|383320188|ref|YP_005381029.1| - 0.053 13.5 3.5 1 9.3 0.3 2.3 1 1 0 2 2 2 0 Mad3/BUB1 homology region 1 TPR_9 PF13371.6 gi|383320188|ref|YP_005381029.1| - 0.17 12.1 3.0 0.91 9.7 0.5 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_3 PF07720.12 gi|383320188|ref|YP_005381029.1| - 0.21 11.6 2.5 0.22 11.6 0.4 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|383320188|ref|YP_005381029.1| - 0.31 11.0 7.9 0.12 12.3 1.3 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383320188|ref|YP_005381029.1| - 0.58 10.3 4.1 52 4.2 0.3 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|383320188|ref|YP_005381029.1| - 1 10.1 7.7 1.7 9.5 0.8 3.1 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_4 PF07721.14 gi|383320188|ref|YP_005381029.1| - 1.2 10.0 6.5 0.49 11.2 0.7 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat Glutaredoxin PF00462.24 gi|383320189|ref|YP_005381030.1| - 2.4e-12 46.9 0.0 5.3e-12 45.8 0.0 1.5 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_2 PF13098.6 gi|383320189|ref|YP_005381030.1| - 8.9e-07 29.3 0.1 1.2e-05 25.7 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain GST_N_3 PF13417.6 gi|383320189|ref|YP_005381030.1| - 2.3e-05 24.7 0.0 3.2e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|383320189|ref|YP_005381030.1| - 3.5e-05 24.1 0.0 4.1e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.6 gi|383320189|ref|YP_005381030.1| - 0.0054 16.8 0.0 0.0082 16.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin PF00085.20 gi|383320189|ref|YP_005381030.1| - 0.017 15.1 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin ArsC PF03960.15 gi|383320189|ref|YP_005381030.1| - 0.038 14.0 0.5 0.11 12.5 0.0 2.0 2 1 0 2 2 2 0 ArsC family Ish1 PF10281.9 gi|383320189|ref|YP_005381030.1| - 0.077 13.3 0.2 0.26 11.6 0.1 2.0 2 1 0 2 2 2 0 Putative stress-responsive nuclear envelope protein TilS_C PF11734.8 gi|383320189|ref|YP_005381030.1| - 0.08 12.4 0.0 3.5 7.1 0.0 2.1 2 0 0 2 2 2 0 TilS substrate C-terminal domain B3_4 PF03483.17 gi|383320190|ref|YP_005381031.1| - 8.1e-29 100.5 0.0 1e-28 100.2 0.0 1.1 1 0 0 1 1 1 1 B3/4 domain SNARE_assoc PF09335.11 gi|383320191|ref|YP_005381032.1| - 3.1e-23 82.5 7.2 3.1e-23 82.5 7.2 1.6 2 0 0 2 2 2 1 SNARE associated Golgi protein tRNA-synt_1e PF01406.19 gi|383320192|ref|YP_005381033.1| - 1.1e-129 432.1 0.0 1.4e-129 431.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|383320192|ref|YP_005381033.1| - 1.2e-15 57.1 0.1 1.3e-08 34.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|383320192|ref|YP_005381033.1| - 5.3e-13 48.1 0.0 1.2e-08 33.7 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|383320192|ref|YP_005381033.1| - 2.3e-08 33.3 0.0 7.8e-06 25.0 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (K) DALR_2 PF09190.11 gi|383320192|ref|YP_005381033.1| - 4e-08 33.6 0.0 2.4e-07 31.1 0.0 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1d PF00750.19 gi|383320192|ref|YP_005381033.1| - 0.004 16.2 0.2 0.18 10.7 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (R) tRNA-synt_1c PF00749.21 gi|383320192|ref|YP_005381033.1| - 0.072 12.0 1.6 0.22 10.4 0.0 2.3 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain Peptidase_S8 PF00082.22 gi|383320193|ref|YP_005381034.1| - 3.4e-65 220.3 3.4 6.4e-65 219.3 3.4 1.5 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.16 gi|383320193|ref|YP_005381034.1| - 8.4e-08 32.8 0.4 2.4e-07 31.3 0.4 1.8 1 0 0 1 1 1 1 Peptidase inhibitor I9 PAS_9 PF13426.7 gi|383320194|ref|YP_005381035.1| - 2.8e-22 78.9 0.0 2.5e-11 43.8 0.0 2.3 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|383320194|ref|YP_005381035.1| - 7.4e-19 68.0 0.0 1.3e-11 44.7 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS PF00989.25 gi|383320194|ref|YP_005381035.1| - 8.9e-18 64.3 0.0 1.8e-10 40.8 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|383320194|ref|YP_005381035.1| - 2.9e-14 52.7 0.0 6.1e-07 29.3 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|383320194|ref|YP_005381035.1| - 1.3e-11 44.6 0.0 7.1e-09 35.8 0.0 2.4 2 0 0 2 2 2 1 PAS fold MarR_2 PF12802.7 gi|383320194|ref|YP_005381035.1| - 0.0011 18.8 0.0 0.0028 17.5 0.0 1.6 1 0 0 1 1 1 1 MarR family TBPIP PF07106.13 gi|383320194|ref|YP_005381035.1| - 0.0012 18.7 0.0 0.0031 17.4 0.0 1.7 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain HTH_IclR PF09339.10 gi|383320194|ref|YP_005381035.1| - 0.0015 18.3 0.0 0.0031 17.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|383320194|ref|YP_005381035.1| - 0.0025 17.7 0.1 0.0073 16.2 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF977 PF06163.11 gi|383320194|ref|YP_005381035.1| - 0.0042 17.0 0.0 0.0099 15.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) PAS_7 PF12860.7 gi|383320194|ref|YP_005381035.1| - 0.0086 16.2 0.2 6.9 6.9 0.0 3.7 3 1 0 3 3 3 1 PAS fold HTH_45 PF14947.6 gi|383320194|ref|YP_005381035.1| - 0.041 13.9 0.0 0.092 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix FeoC PF09012.10 gi|383320194|ref|YP_005381035.1| - 0.047 13.8 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_5 PF01022.20 gi|383320194|ref|YP_005381035.1| - 0.058 13.3 0.0 0.26 11.2 0.0 2.1 3 0 0 3 3 2 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|383320194|ref|YP_005381035.1| - 0.065 13.0 0.3 0.19 11.5 0.0 1.8 2 0 0 2 2 2 0 LexA DNA binding domain HTH_40 PF14493.6 gi|383320194|ref|YP_005381035.1| - 0.067 13.7 0.1 2.5 8.6 0.0 2.8 2 1 1 3 3 3 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|383320194|ref|YP_005381035.1| - 0.085 13.2 0.1 2.8 8.4 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator HTH_24 PF13412.6 gi|383320194|ref|YP_005381035.1| - 0.12 12.0 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Mnd1 PF03962.15 gi|383320194|ref|YP_005381035.1| - 0.12 12.7 0.0 0.46 10.8 0.0 2.0 1 0 0 1 1 1 0 Mnd1 HTH domain Siah-Interact_N PF09032.11 gi|383320194|ref|YP_005381035.1| - 0.32 11.3 6.4 0.66 10.3 0.1 2.9 3 0 0 3 3 3 0 Siah interacting protein, N terminal AIRS PF00586.24 gi|383320195|ref|YP_005381036.1| - 9.7e-24 83.9 1.8 1.5e-23 83.3 1.8 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|383320195|ref|YP_005381036.1| - 1.4e-09 38.3 0.0 2.3e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Acetyltransf_10 PF13673.7 gi|383320196|ref|YP_005381037.1| - 3.4e-17 62.6 0.2 1.8e-16 60.2 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|383320196|ref|YP_005381037.1| - 4.2e-14 52.8 0.1 1.2e-13 51.3 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|383320196|ref|YP_005381037.1| - 4.5e-11 43.0 0.7 1.4e-10 41.4 0.1 2.1 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|383320196|ref|YP_005381037.1| - 0.00051 19.9 0.0 0.001 19.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|383320196|ref|YP_005381037.1| - 0.00098 19.2 0.0 0.0037 17.4 0.0 2.0 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FMN_red PF03358.15 gi|383320197|ref|YP_005381038.1| - 1.7e-36 125.3 0.0 2.2e-36 124.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|383320197|ref|YP_005381038.1| - 1.8e-07 31.1 0.0 2.3e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|383320197|ref|YP_005381038.1| - 0.061 13.6 0.0 0.13 12.5 0.0 1.7 1 1 0 1 1 1 0 Flavodoxin domain Hydrolase PF00702.26 gi|383320197|ref|YP_005381038.1| - 0.072 13.4 0.0 0.3 11.3 0.0 1.8 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Met_10 PF02475.16 gi|383320198|ref|YP_005381039.1| - 0.096 12.4 0.0 0.21 11.3 0.0 1.6 1 1 0 1 1 1 0 Met-10+ like-protein zf-FPG_IleRS PF06827.14 gi|383320198|ref|YP_005381039.1| - 0.5 10.3 5.2 6 6.8 1.7 2.8 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS BPL_N PF09825.9 gi|383320199|ref|YP_005381040.1| - 0.056 12.5 0.1 1.4 8.0 0.0 2.1 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal HTH_27 PF13463.6 gi|383320200|ref|YP_005381041.1| - 5.5e-06 26.8 0.0 1.8e-05 25.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|383320200|ref|YP_005381041.1| - 0.00058 19.8 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|383320200|ref|YP_005381041.1| - 0.0025 17.6 0.2 0.015 15.0 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4364) DUF4164 PF13747.6 gi|383320200|ref|YP_005381041.1| - 0.74 10.1 8.8 5.6 7.3 6.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) Metallophos PF00149.28 gi|383320201|ref|YP_005381042.1| - 2e-11 44.8 0.2 9.7e-11 42.5 0.1 2.0 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|383320201|ref|YP_005381042.1| - 5.6e-06 26.6 0.0 5e-05 23.5 0.0 2.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AAA_23 PF13476.6 gi|383320202|ref|YP_005381043.1| - 7.9e-19 68.9 5.2 7.9e-19 68.9 5.2 5.7 1 1 4 5 5 4 1 AAA domain SMC_N PF02463.19 gi|383320202|ref|YP_005381043.1| - 5.9e-15 55.3 29.5 8.4e-14 51.5 29.5 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|383320202|ref|YP_005381043.1| - 3.9e-07 30.2 8.5 0.00046 20.1 1.4 2.9 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|383320202|ref|YP_005381043.1| - 8.4e-07 29.0 42.4 0.00082 19.2 23.7 3.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|383320202|ref|YP_005381043.1| - 1.5e-06 27.8 0.0 2.7e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|383320202|ref|YP_005381043.1| - 8.3e-06 26.4 7.1 0.022 15.3 0.1 4.0 2 1 0 3 3 3 2 ABC transporter SbcCD_C PF13558.6 gi|383320202|ref|YP_005381043.1| - 2.2e-05 24.6 0.0 5.4e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|383320202|ref|YP_005381043.1| - 3.1e-05 23.7 0.0 3.1e-05 23.7 0.0 3.4 5 0 0 5 5 5 1 AAA domain MukB PF04310.12 gi|383320202|ref|YP_005381043.1| - 0.026 14.3 1.0 0.13 12.1 0.0 2.6 3 0 0 3 3 3 0 MukB N-terminal DUF4954 PF16314.5 gi|383320202|ref|YP_005381043.1| - 0.48 8.5 8.5 0.9 7.6 8.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) AAA_16 PF13191.6 gi|383320202|ref|YP_005381043.1| - 1.1 9.6 0.0 1.1 9.6 0.0 3.0 3 1 0 3 3 3 0 AAA ATPase domain Tup_N PF08581.10 gi|383320202|ref|YP_005381043.1| - 1.3 9.4 40.8 0.14 12.5 5.8 5.4 3 2 1 4 4 4 0 Tup N-terminal DUF3450 PF11932.8 gi|383320202|ref|YP_005381043.1| - 1.5 8.0 42.2 0.86 8.9 9.7 5.2 2 2 3 5 5 5 0 Protein of unknown function (DUF3450) EzrA PF06160.12 gi|383320202|ref|YP_005381043.1| - 2 6.5 56.0 0.21 9.7 1.9 3.1 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA DUF4407 PF14362.6 gi|383320202|ref|YP_005381043.1| - 4.2 6.6 40.8 3.3 7.0 1.3 4.1 3 2 2 5 5 5 0 Domain of unknown function (DUF4407) FUSC PF04632.12 gi|383320202|ref|YP_005381043.1| - 4.7 5.6 7.7 1.4 7.4 0.1 2.7 3 0 0 3 3 3 0 Fusaric acid resistance protein family EIAV_Rev PF11129.8 gi|383320202|ref|YP_005381043.1| - 4.7 7.4 10.8 8.9 6.5 3.7 3.3 2 2 2 4 4 4 0 Rev protein of equine infectious anaemia virus CorA PF01544.18 gi|383320202|ref|YP_005381043.1| - 4.9 6.4 0.0 4.9 6.4 0.0 4.3 3 2 1 4 4 4 0 CorA-like Mg2+ transporter protein NurA PF09376.10 gi|383320203|ref|YP_005381044.1| - 1.3e-19 70.9 0.0 2.1e-19 70.2 0.0 1.3 1 0 0 1 1 1 1 NurA domain BEN PF10523.9 gi|383320204|ref|YP_005381045.1| - 0.0064 16.7 0.0 0.012 15.9 0.0 1.4 1 0 0 1 1 1 1 BEN domain HAS-barrel PF09378.10 gi|383320204|ref|YP_005381045.1| - 0.035 14.2 0.2 0.056 13.6 0.2 1.4 1 0 0 1 1 1 0 HAS barrel domain DUF87 PF01935.17 gi|383320205|ref|YP_005381046.1| - 6.9e-38 131.0 0.2 1.6e-37 129.8 0.2 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|383320205|ref|YP_005381046.1| - 2e-06 26.7 0.0 0.0027 16.4 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) ResIII PF04851.15 gi|383320205|ref|YP_005381046.1| - 3.4e-05 23.9 0.1 0.0017 18.4 0.0 2.5 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|383320205|ref|YP_005381046.1| - 0.0006 18.8 0.0 0.028 13.4 0.0 2.3 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|383320205|ref|YP_005381046.1| - 0.0024 17.3 0.2 0.011 15.1 0.1 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|383320205|ref|YP_005381046.1| - 0.0026 16.8 0.0 0.27 10.1 0.0 2.4 2 0 0 2 2 2 1 AAA-like domain MeaB PF03308.16 gi|383320205|ref|YP_005381046.1| - 0.01 14.9 0.0 0.017 14.1 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zot PF05707.12 gi|383320205|ref|YP_005381046.1| - 0.014 15.0 0.0 0.032 13.9 0.0 1.6 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) SWI2_SNF2 PF18766.1 gi|383320205|ref|YP_005381046.1| - 0.024 14.3 0.1 3.2 7.4 0.0 2.4 1 1 0 2 2 2 0 SWI2/SNF2 ATPase DEAD PF00270.29 gi|383320205|ref|YP_005381046.1| - 0.026 14.3 0.0 6.6 6.5 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase T4SS-DNA_transf PF02534.14 gi|383320205|ref|YP_005381046.1| - 0.035 12.9 0.1 0.13 11.1 0.1 1.8 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer AAA_22 PF13401.6 gi|383320205|ref|YP_005381046.1| - 0.094 13.0 0.0 5.6 7.2 0.0 2.8 2 1 0 2 2 2 0 AAA domain Helicase_RecD PF05127.14 gi|383320205|ref|YP_005381046.1| - 0.17 11.7 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 Helicase B-block_TFIIIC PF04182.12 gi|383320206|ref|YP_005381047.1| - 1.3e-05 25.3 0.0 2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|383320206|ref|YP_005381047.1| - 0.0075 15.8 0.5 0.011 15.2 0.5 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding ENT PF03735.14 gi|383320206|ref|YP_005381047.1| - 0.01 15.9 0.1 0.02 14.9 0.1 1.5 1 0 0 1 1 1 0 ENT domain MarR PF01047.22 gi|383320206|ref|YP_005381047.1| - 0.014 15.3 0.1 0.024 14.6 0.1 1.3 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 gi|383320206|ref|YP_005381047.1| - 0.092 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 MarR family LSM PF01423.22 gi|383320207|ref|YP_005381048.1| - 3.9e-17 61.7 0.8 4.2e-17 61.6 0.8 1.0 1 0 0 1 1 1 1 LSM domain Flavodoxin_1 PF00258.25 gi|383320208|ref|YP_005381049.1| - 7.5e-14 52.1 0.0 9.5e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|383320208|ref|YP_005381049.1| - 9.1e-10 38.9 0.0 1.2e-09 38.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.15 gi|383320208|ref|YP_005381049.1| - 3.5e-06 26.9 0.1 0.0012 18.6 0.0 2.1 1 1 1 2 2 2 2 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|383320208|ref|YP_005381049.1| - 6e-06 26.0 0.0 1.3e-05 24.9 0.0 1.7 2 0 0 2 2 2 1 Flavodoxin domain Cucumopine_C PF18631.1 gi|383320208|ref|YP_005381049.1| - 0.012 15.5 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Cucumopine synthase C-terminal helical bundle domain Dehydratase_MU PF02288.15 gi|383320208|ref|YP_005381049.1| - 0.051 13.5 0.0 3.6 7.5 0.0 2.1 2 0 0 2 2 2 0 Dehydratase medium subunit tRNA_synthFbeta PF17759.1 gi|383320209|ref|YP_005381050.1| - 4.9e-46 156.9 0.0 7.4e-46 156.3 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|383320209|ref|YP_005381050.1| - 8.5e-19 67.6 0.5 9.4e-14 51.5 0.1 2.7 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|383320209|ref|YP_005381050.1| - 9.2e-16 58.0 0.0 1.4e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|383320209|ref|YP_005381050.1| - 4.1e-09 36.5 1.4 5.3e-07 29.8 0.3 3.5 3 1 0 3 3 3 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|383320210|ref|YP_005381051.1| - 4.9e-80 268.5 0.0 6.3e-80 268.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|383320210|ref|YP_005381051.1| - 9.3e-05 21.7 0.3 0.031 13.4 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA_synthFbeta PF17759.1 gi|383320210|ref|YP_005381051.1| - 0.004 16.6 0.0 0.067 12.6 0.0 2.2 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_1b PF00579.25 gi|383320211|ref|YP_005381052.1| - 2.8e-24 86.0 0.0 3.8e-24 85.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|383320211|ref|YP_005381052.1| - 0.016 14.2 0.0 0.048 12.6 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (K) CAP18_C PF12153.8 gi|383320211|ref|YP_005381052.1| - 0.085 12.7 0.4 0.21 11.5 0.4 1.7 1 0 0 1 1 1 0 LPS binding domain of CAP18 (C terminal) tRNA_int_endo PF01974.17 gi|383320212|ref|YP_005381053.1| - 1.9e-49 165.7 2.0 1.4e-23 82.7 0.3 2.2 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|383320212|ref|YP_005381053.1| - 3.5e-37 125.9 3.7 1.9e-19 69.1 0.8 2.8 3 0 0 3 3 3 2 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.10 gi|383320212|ref|YP_005381053.1| - 0.036 14.4 0.0 0.075 13.3 0.0 1.5 1 0 0 1 1 1 0 Sen15 protein Diphthamide_syn PF01866.17 gi|383320213|ref|YP_005381054.1| - 1.1e-76 258.2 0.0 1.3e-76 258.0 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein SAP PF02037.27 gi|383320215|ref|YP_005381056.1| - 0.00018 21.2 0.0 0.00038 20.1 0.0 1.6 1 0 0 1 1 1 1 SAP domain Tai4 PF16695.5 gi|383320215|ref|YP_005381056.1| - 0.091 13.3 0.2 0.2 12.2 0.2 1.5 1 0 0 1 1 1 0 Type VI secretion system (T6SS), amidase immunity protein TPR_7 PF13176.6 gi|383320215|ref|YP_005381056.1| - 0.17 12.0 1.1 0.66 10.1 0.2 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat Alanine_zipper PF11839.8 gi|383320216|ref|YP_005381057.1| - 0.2 12.0 76.7 1.8e+04 -49.3 76.7 5.0 1 1 0 1 1 1 0 Alanine-zipper, major outer membrane lipoprotein GARP PF16731.5 gi|383320216|ref|YP_005381057.1| - 1.6 8.4 69.1 9.7 5.8 20.2 3.4 1 1 2 3 3 3 0 Glutamic acid/alanine-rich protein of Trypanosoma N6_Mtase PF02384.16 gi|383320217|ref|YP_005381058.1| - 4.1e-15 55.8 0.0 5.8e-13 48.8 0.0 2.1 2 0 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.11 gi|383320217|ref|YP_005381058.1| - 1.1e-12 48.4 0.0 2.6e-12 47.2 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase TaqI_C PF12950.7 gi|383320217|ref|YP_005381058.1| - 1.9e-05 24.7 0.0 4e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain UPF0020 PF01170.18 gi|383320217|ref|YP_005381058.1| - 0.0074 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Endotoxin_N PF03945.14 gi|383320217|ref|YP_005381058.1| - 0.2 11.3 0.0 0.34 10.6 0.0 1.3 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain Nop PF01798.18 gi|383320218|ref|YP_005381059.1| - 1.1e-44 152.6 0.3 1.9e-43 148.6 0.6 2.0 2 0 0 2 2 2 1 snoRNA binding domain, fibrillarin DUF5633 PF18656.1 gi|383320218|ref|YP_005381059.1| - 0.042 13.7 1.4 0.88 9.5 0.0 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF5633) Fibrillarin PF01269.17 gi|383320219|ref|YP_005381060.1| - 1.6e-66 223.7 0.0 2e-66 223.4 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PqqD PF05402.12 gi|383320220|ref|YP_005381061.1| - 1.3e-10 41.4 0.0 1.9e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) MttA_Hcf106 PF02416.16 gi|383320221|ref|YP_005381062.1| - 4.4e-13 48.3 0.4 1.9e-12 46.3 0.1 1.8 2 0 0 2 2 2 1 mttA/Hcf106 family Sigma70_r3 PF04539.16 gi|383320221|ref|YP_005381062.1| - 0.00049 20.1 0.6 0.059 13.5 0.6 2.3 1 1 0 1 1 1 1 Sigma-70 region 3 LexA_DNA_bind PF01726.16 gi|383320221|ref|YP_005381062.1| - 0.021 14.6 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain TPP_enzyme_C PF02775.21 gi|383320221|ref|YP_005381062.1| - 0.17 11.6 0.2 0.28 11.0 0.2 1.4 1 1 1 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DUF5643 PF18705.1 gi|383320222|ref|YP_005381063.1| - 0.016 15.2 0.1 0.026 14.5 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5643) Tetraspanin PF00335.20 gi|383320223|ref|YP_005381064.1| - 5.6 6.6 8.6 0.77 9.4 3.9 1.8 2 0 0 2 2 2 0 Tetraspanin family CMD PF02627.20 gi|383320224|ref|YP_005381065.1| - 5.9e-16 58.3 0.1 1e-15 57.5 0.1 1.4 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family NikR_C PF08753.11 gi|383320225|ref|YP_005381066.1| - 9.7e-33 112.2 3.9 1.5e-32 111.6 3.9 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|383320225|ref|YP_005381066.1| - 3.8e-10 39.3 0.1 7.8e-10 38.3 0.1 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|383320225|ref|YP_005381066.1| - 0.00038 20.6 0.1 0.0074 16.4 0.0 2.1 1 1 1 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system NikR_C PF08753.11 gi|383320226|ref|YP_005381067.1| - 1.2e-26 92.6 0.2 1.6e-26 92.3 0.2 1.1 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|383320226|ref|YP_005381067.1| - 1.3e-09 37.6 0.0 2.7e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Bromo_TP PF07524.13 gi|383320226|ref|YP_005381067.1| - 0.083 12.9 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Bromodomain associated Methyltransf_25 PF13649.6 gi|383320227|ref|YP_005381068.1| - 1.7e-11 44.7 0.0 2.9e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|383320227|ref|YP_005381068.1| - 1.9e-07 30.4 0.0 2.9e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.15 gi|383320227|ref|YP_005381068.1| - 5.9e-07 29.0 0.0 1.2e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_23 PF13489.6 gi|383320227|ref|YP_005381068.1| - 9.5e-07 28.8 0.0 1.4e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|383320227|ref|YP_005381068.1| - 2e-06 28.5 0.0 3.8e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383320227|ref|YP_005381068.1| - 2.2e-06 27.6 0.0 4.3e-06 26.6 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain PCMT PF01135.19 gi|383320227|ref|YP_005381068.1| - 3.1e-06 27.1 0.0 4.5e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|383320227|ref|YP_005381068.1| - 1.9e-05 24.3 0.0 3.4e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|383320227|ref|YP_005381068.1| - 3.3e-05 24.5 0.0 5.8e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|383320227|ref|YP_005381068.1| - 9.9e-05 21.6 0.0 0.00013 21.1 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Met_10 PF02475.16 gi|383320227|ref|YP_005381068.1| - 0.0032 17.2 0.0 0.0054 16.5 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Ubie_methyltran PF01209.18 gi|383320227|ref|YP_005381068.1| - 0.0051 16.2 0.0 0.0094 15.3 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|383320227|ref|YP_005381068.1| - 0.0058 16.0 0.0 0.0096 15.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltr_RsmB-F PF01189.17 gi|383320227|ref|YP_005381068.1| - 0.014 15.1 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_16 PF10294.9 gi|383320227|ref|YP_005381068.1| - 0.015 15.1 0.1 0.023 14.5 0.1 1.4 1 0 0 1 1 1 0 Lysine methyltransferase PrmA PF06325.13 gi|383320227|ref|YP_005381068.1| - 0.022 14.2 0.0 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|383320227|ref|YP_005381068.1| - 0.022 14.4 0.0 0.07 12.8 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|383320227|ref|YP_005381068.1| - 0.038 13.6 0.0 0.071 12.7 0.0 1.5 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Inhibitor_I29 PF08246.12 gi|383320227|ref|YP_005381068.1| - 0.038 14.4 0.0 0.12 12.8 0.0 1.8 2 0 0 2 2 1 0 Cathepsin propeptide inhibitor domain (I29) Methyltransf_18 PF12847.7 gi|383320227|ref|YP_005381068.1| - 0.055 13.4 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|383320227|ref|YP_005381068.1| - 0.06 12.3 0.0 0.098 11.6 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.17 gi|383320227|ref|YP_005381068.1| - 0.064 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase SBP_bac_5 PF00496.22 gi|383320228|ref|YP_005381069.1| - 8.2e-83 278.4 2.5 1.3e-82 277.8 2.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SBP_bac_5 PF00496.22 gi|383320229|ref|YP_005381070.1| - 4.7e-71 239.7 5.6 6.3e-71 239.3 5.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_31 PF13847.6 gi|383320230|ref|YP_005381071.1| - 5.4e-13 49.0 0.0 8e-13 48.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383320230|ref|YP_005381071.1| - 7.3e-13 49.0 0.0 3.8e-12 46.7 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383320230|ref|YP_005381071.1| - 2e-08 34.8 0.0 4.6e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383320230|ref|YP_005381071.1| - 1.6e-06 28.1 0.0 2.3e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|383320230|ref|YP_005381071.1| - 5.6e-05 22.7 0.0 8.8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|383320230|ref|YP_005381071.1| - 5.7e-05 22.5 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.12 gi|383320230|ref|YP_005381071.1| - 7.9e-05 23.3 0.0 0.00094 19.9 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|383320230|ref|YP_005381071.1| - 0.00021 20.7 0.0 0.00034 20.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|383320230|ref|YP_005381071.1| - 0.00029 20.7 0.0 0.00039 20.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NNMT_PNMT_TEMT PF01234.17 gi|383320230|ref|YP_005381071.1| - 0.00097 18.4 0.0 0.0015 17.8 0.0 1.2 1 0 0 1 1 1 1 NNMT/PNMT/TEMT family RrnaAD PF00398.20 gi|383320230|ref|YP_005381071.1| - 0.00099 18.2 0.0 0.0015 17.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltr_RsmB-F PF01189.17 gi|383320230|ref|YP_005381071.1| - 0.0012 18.5 0.0 0.002 17.8 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PrmA PF06325.13 gi|383320230|ref|YP_005381071.1| - 0.0015 18.0 0.1 0.0066 15.9 0.0 1.9 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|383320230|ref|YP_005381071.1| - 0.0017 18.0 0.0 0.003 17.2 0.0 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.14 gi|383320230|ref|YP_005381071.1| - 0.0047 16.4 0.0 0.0077 15.7 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|383320230|ref|YP_005381071.1| - 0.016 14.7 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase FtsJ PF01728.19 gi|383320230|ref|YP_005381071.1| - 0.021 14.9 0.0 0.033 14.3 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase NodS PF05401.11 gi|383320230|ref|YP_005381071.1| - 0.024 14.2 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) MetW PF07021.12 gi|383320230|ref|YP_005381071.1| - 0.032 13.8 0.0 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|383320230|ref|YP_005381071.1| - 0.06 12.3 0.0 0.1 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TPMT PF05724.11 gi|383320230|ref|YP_005381071.1| - 0.086 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) tRNA_U5-meth_tr PF05958.11 gi|383320230|ref|YP_005381071.1| - 0.096 11.7 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase BPD_transp_1 PF00528.22 gi|383320231|ref|YP_005381072.1| - 7.3e-37 126.9 13.8 1.4e-36 125.9 13.8 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|383320232|ref|YP_005381073.1| - 6.7e-19 68.3 12.3 6.7e-19 68.3 12.3 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|383320232|ref|YP_005381073.1| - 3.6e-07 30.1 0.3 3.6e-07 30.1 0.3 3.1 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF3169 PF11368.8 gi|383320232|ref|YP_005381073.1| - 0.019 14.5 4.4 0.019 14.5 3.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) ABC_tran PF00005.27 gi|383320233|ref|YP_005381074.1| - 5.9e-20 72.2 0.0 8.2e-20 71.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|383320233|ref|YP_005381074.1| - 4.9e-11 43.0 0.0 1e-10 42.0 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|383320233|ref|YP_005381074.1| - 9.5e-05 21.9 0.0 0.013 15.0 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|383320233|ref|YP_005381074.1| - 0.014 15.1 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|383320233|ref|YP_005381074.1| - 0.018 15.3 0.1 0.07 13.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|383320233|ref|YP_005381074.1| - 0.075 12.8 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|383320234|ref|YP_005381075.1| - 5.8e-29 101.4 0.0 8e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320234|ref|YP_005381075.1| - 6.1e-08 32.8 0.7 5.7e-05 23.1 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|383320234|ref|YP_005381075.1| - 8.9e-05 22.9 0.0 0.00017 22.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|383320234|ref|YP_005381075.1| - 0.0001 22.6 0.0 0.00051 20.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|383320234|ref|YP_005381075.1| - 0.00064 20.2 0.0 0.0019 18.6 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|383320234|ref|YP_005381075.1| - 0.0041 16.6 0.6 0.046 13.2 0.6 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|383320234|ref|YP_005381075.1| - 0.009 16.0 0.1 0.051 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|383320234|ref|YP_005381075.1| - 0.011 15.7 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|383320234|ref|YP_005381075.1| - 0.013 14.8 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|383320234|ref|YP_005381075.1| - 0.015 15.0 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|383320234|ref|YP_005381075.1| - 0.026 14.5 0.0 0.23 11.5 0.0 2.1 1 1 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|383320234|ref|YP_005381075.1| - 0.038 13.7 0.0 1.6 8.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_8 PF12780.7 gi|383320234|ref|YP_005381075.1| - 0.057 12.7 0.0 1 8.6 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 NB-ARC PF00931.22 gi|383320234|ref|YP_005381075.1| - 0.064 12.4 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|383320234|ref|YP_005381075.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|383320234|ref|YP_005381075.1| - 0.11 12.4 1.2 0.77 9.7 1.1 2.3 1 1 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|383320234|ref|YP_005381075.1| - 0.12 13.0 0.0 0.31 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Lactamase_B_2 PF12706.7 gi|383320237|ref|YP_005381078.1| - 4.2e-07 29.7 0.1 0.014 14.9 0.0 3.1 3 0 0 3 3 3 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|383320237|ref|YP_005381078.1| - 0.00031 20.8 0.3 0.0018 18.3 0.0 2.4 4 1 0 4 4 4 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|383320237|ref|YP_005381078.1| - 0.00034 20.5 0.3 0.0014 18.5 0.1 2.1 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_3 PF13483.6 gi|383320237|ref|YP_005381078.1| - 0.12 12.3 0.0 3.7 7.4 0.0 2.4 2 0 0 2 2 2 0 Beta-lactamase superfamily domain FmdE PF02663.14 gi|383320238|ref|YP_005381079.1| - 5.6e-45 152.6 0.1 7.4e-45 152.2 0.1 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|383320238|ref|YP_005381079.1| - 4.3e-09 36.1 2.2 8.6e-09 35.2 2.2 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger OrfB_Zn_ribbon PF07282.11 gi|383320238|ref|YP_005381079.1| - 0.011 15.7 0.2 0.03 14.2 0.2 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF1840 PF08895.11 gi|383320238|ref|YP_005381079.1| - 0.02 15.2 0.2 0.054 13.8 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1840) CAMP_factor PF07373.11 gi|383320238|ref|YP_005381079.1| - 0.053 13.1 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 CAMP factor (Cfa) zf-ACC PF17848.1 gi|383320238|ref|YP_005381079.1| - 0.11 12.6 1.2 0.32 11.1 1.2 1.9 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain GATase_3 PF07685.14 gi|383320239|ref|YP_005381080.1| - 1.3e-38 132.6 0.0 2e-38 132.0 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|383320239|ref|YP_005381080.1| - 9.9e-19 67.7 0.0 1.7e-18 66.9 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|383320239|ref|YP_005381080.1| - 1.2e-16 61.1 0.0 1.7e-10 41.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain MobB PF03205.14 gi|383320239|ref|YP_005381080.1| - 0.015 15.2 0.0 0.042 13.7 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SNO PF01174.19 gi|383320239|ref|YP_005381080.1| - 0.031 14.1 0.0 0.053 13.4 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DUF1611 PF07755.11 gi|383320239|ref|YP_005381080.1| - 0.041 13.1 0.0 0.065 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain Peptidase_S51 PF03575.17 gi|383320239|ref|YP_005381080.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S51 TP_methylase PF00590.20 gi|383320240|ref|YP_005381081.1| - 1.1e-22 81.1 0.8 5.8e-21 75.4 0.8 2.4 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_25 PF13649.6 gi|383320240|ref|YP_005381081.1| - 0.11 13.2 0.0 0.24 12.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain CbiD PF01888.17 gi|383320241|ref|YP_005381082.1| - 1.2e-47 162.3 0.3 1.6e-47 161.9 0.3 1.1 1 0 0 1 1 1 1 CbiD LEA_3 PF03242.13 gi|383320241|ref|YP_005381082.1| - 0.22 12.3 1.3 21 5.9 0.3 2.6 2 1 1 3 3 3 0 Late embryogenesis abundant protein Caps_synth PF05704.12 gi|383320241|ref|YP_005381082.1| - 0.23 10.8 0.0 0.32 10.3 0.0 1.1 1 0 0 1 1 1 0 Capsular polysaccharide synthesis protein CbiC PF02570.15 gi|383320242|ref|YP_005381083.1| - 6e-56 189.2 0.3 7e-56 189.0 0.3 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.20 gi|383320243|ref|YP_005381084.1| - 1.5e-39 136.2 0.6 1.8e-39 135.9 0.6 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CarS-like PF01864.17 gi|383320243|ref|YP_005381084.1| - 0.073 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 CDP-archaeol synthase CbiG_N PF11760.8 gi|383320244|ref|YP_005381085.1| - 1.8e-27 95.1 0.2 5.6e-27 93.6 0.1 1.9 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|383320244|ref|YP_005381085.1| - 2.7e-27 95.6 0.1 5.3e-27 94.7 0.1 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.20 gi|383320245|ref|YP_005381086.1| - 1.7e-50 171.9 3.1 2e-50 171.7 3.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|383320245|ref|YP_005381086.1| - 0.0051 17.2 0.1 0.0097 16.3 0.1 1.5 1 1 0 1 1 1 1 Radical SAM superfamily TP_methylase PF00590.20 gi|383320246|ref|YP_005381087.1| - 1.2e-34 120.1 0.1 7.3e-34 117.6 0.1 1.8 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_31 PF13847.6 gi|383320247|ref|YP_005381088.1| - 1.7e-10 40.9 0.0 2e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383320247|ref|YP_005381088.1| - 1.5e-09 38.4 0.1 1.9e-09 38.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|383320247|ref|YP_005381088.1| - 2.2e-07 30.9 0.0 2.9e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383320247|ref|YP_005381088.1| - 3.1e-07 30.9 0.0 5.2e-07 30.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|383320247|ref|YP_005381088.1| - 3.8e-06 26.5 0.0 6.1e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|383320247|ref|YP_005381088.1| - 1.5e-05 24.9 0.0 3.2e-05 23.8 0.0 1.5 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|383320247|ref|YP_005381088.1| - 7.2e-05 22.3 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|383320247|ref|YP_005381088.1| - 0.00012 21.6 0.0 0.00018 21.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.20 gi|383320247|ref|YP_005381088.1| - 0.00026 20.4 0.0 0.00037 19.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.12 gi|383320247|ref|YP_005381088.1| - 0.00087 20.0 0.0 0.0015 19.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|383320247|ref|YP_005381088.1| - 0.0021 17.4 0.0 0.0024 17.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DOT1 PF08123.13 gi|383320247|ref|YP_005381088.1| - 0.0029 17.2 0.0 0.0037 16.8 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 Cons_hypoth95 PF03602.15 gi|383320247|ref|YP_005381088.1| - 0.005 16.5 0.2 0.0092 15.6 0.1 1.5 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|383320247|ref|YP_005381088.1| - 0.0061 16.4 0.0 0.0065 16.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|383320247|ref|YP_005381088.1| - 0.044 13.8 0.0 0.066 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|383320247|ref|YP_005381088.1| - 0.071 14.1 0.0 0.11 13.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.14 gi|383320247|ref|YP_005381088.1| - 0.075 12.4 0.0 0.16 11.4 0.0 1.5 2 0 0 2 2 2 0 Tellurite resistance protein TehB UPF0020 PF01170.18 gi|383320247|ref|YP_005381088.1| - 0.094 12.4 0.3 0.59 9.8 0.3 1.9 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 CbiM PF01891.16 gi|383320248|ref|YP_005381089.1| - 5.7e-50 170.0 20.6 6.5e-50 169.8 20.6 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.15 gi|383320249|ref|YP_005381090.1| - 1.4e-23 82.6 0.6 1.8e-23 82.3 0.6 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN ABC_tran PF00005.27 gi|383320250|ref|YP_005381091.1| - 4.9e-31 108.1 0.0 7e-31 107.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320250|ref|YP_005381091.1| - 8.2e-16 58.7 0.3 6.8e-10 39.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383320250|ref|YP_005381091.1| - 1e-06 28.3 0.1 5e-06 26.1 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|383320250|ref|YP_005381091.1| - 8.3e-05 22.2 0.2 0.00018 21.2 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|383320250|ref|YP_005381091.1| - 0.0023 18.4 0.4 0.004 17.7 0.4 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|383320250|ref|YP_005381091.1| - 0.004 16.9 0.1 0.4 10.3 0.3 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_24 PF13479.6 gi|383320250|ref|YP_005381091.1| - 0.11 12.2 0.1 0.23 11.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|383320250|ref|YP_005381091.1| - 0.14 12.4 0.1 0.45 10.8 0.1 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DLIC PF05783.11 gi|383320250|ref|YP_005381091.1| - 0.25 10.1 0.2 0.37 9.6 0.2 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) SBP_bac_5 PF00496.22 gi|383320251|ref|YP_005381092.1| - 8e-89 298.2 4.5 1e-88 297.9 4.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle V-SNARE PF05008.15 gi|383320251|ref|YP_005381092.1| - 0.5 10.8 1.7 29 5.1 0.2 2.4 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Methyltransf_25 PF13649.6 gi|383320252|ref|YP_005381093.1| - 1.9e-14 54.1 0.1 5.4e-14 52.7 0.0 1.9 2 1 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383320252|ref|YP_005381093.1| - 6.5e-11 42.2 0.0 9.8e-11 41.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383320252|ref|YP_005381093.1| - 1.1e-10 42.0 0.0 3.1e-10 40.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383320252|ref|YP_005381093.1| - 8.8e-09 35.4 0.0 1.2e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|383320252|ref|YP_005381093.1| - 5.2e-08 33.5 0.0 9.9e-08 32.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|383320252|ref|YP_005381093.1| - 2.4e-06 27.1 0.0 4e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|383320252|ref|YP_005381093.1| - 2.7e-06 27.0 0.0 5.3e-06 26.0 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|383320252|ref|YP_005381093.1| - 4.3e-06 26.4 0.0 6.3e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|383320252|ref|YP_005381093.1| - 1.4e-05 24.9 0.0 2.1e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein TehB PF03848.14 gi|383320252|ref|YP_005381093.1| - 2.9e-05 23.5 0.0 0.00017 21.1 0.0 2.0 1 1 1 2 2 2 1 Tellurite resistance protein TehB FtsJ PF01728.19 gi|383320252|ref|YP_005381093.1| - 6e-05 23.2 0.0 0.00018 21.7 0.0 1.6 2 0 0 2 2 2 1 FtsJ-like methyltransferase CMAS PF02353.20 gi|383320252|ref|YP_005381093.1| - 6.3e-05 22.4 0.0 8.8e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|383320252|ref|YP_005381093.1| - 0.00011 21.8 0.0 0.00017 21.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase RrnaAD PF00398.20 gi|383320252|ref|YP_005381093.1| - 0.00017 20.7 0.0 0.00025 20.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase NodS PF05401.11 gi|383320252|ref|YP_005381093.1| - 0.00034 20.3 0.0 0.00053 19.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_16 PF10294.9 gi|383320252|ref|YP_005381093.1| - 0.00037 20.3 0.0 0.00059 19.6 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase tRNA_U5-meth_tr PF05958.11 gi|383320252|ref|YP_005381093.1| - 0.002 17.2 0.0 0.003 16.6 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DREV PF05219.12 gi|383320252|ref|YP_005381093.1| - 0.0023 17.1 0.0 0.012 14.8 0.0 1.9 2 0 0 2 2 2 1 DREV methyltransferase Methyltr_RsmB-F PF01189.17 gi|383320252|ref|YP_005381093.1| - 0.003 17.2 0.0 0.0063 16.2 0.0 1.5 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F AlaDh_PNT_C PF01262.21 gi|383320252|ref|YP_005381093.1| - 0.003 16.9 0.0 0.0043 16.4 0.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Cons_hypoth95 PF03602.15 gi|383320252|ref|YP_005381093.1| - 0.0038 16.9 0.0 0.0065 16.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 ADH_zinc_N PF00107.26 gi|383320252|ref|YP_005381093.1| - 0.0048 16.9 0.0 0.0081 16.1 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_18 PF12847.7 gi|383320252|ref|YP_005381093.1| - 0.0052 16.7 0.0 0.012 15.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|383320252|ref|YP_005381093.1| - 0.017 14.3 0.0 0.02 14.1 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain GidB PF02527.15 gi|383320252|ref|YP_005381093.1| - 0.034 13.5 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G PCMT PF01135.19 gi|383320252|ref|YP_005381093.1| - 0.038 13.8 0.0 0.062 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|383320252|ref|YP_005381093.1| - 0.084 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase BPD_transp_1 PF00528.22 gi|383320253|ref|YP_005381094.1| - 2.5e-38 131.7 13.1 2.5e-38 131.7 13.1 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|383320254|ref|YP_005381095.1| - 6e-23 81.5 12.4 6e-23 81.5 12.4 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|383320254|ref|YP_005381095.1| - 0.0038 17.2 0.2 0.0038 17.2 0.2 4.7 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|383320255|ref|YP_005381096.1| - 7.1e-55 185.3 0.0 1.8e-28 99.8 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|383320255|ref|YP_005381096.1| - 2.5e-17 63.2 0.0 1.6e-14 54.2 0.0 2.4 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|383320255|ref|YP_005381096.1| - 1.4e-13 50.8 3.0 2.1e-05 24.1 0.3 3.6 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|383320255|ref|YP_005381096.1| - 4.9e-11 43.0 7.0 0.00089 19.2 0.0 4.1 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|383320255|ref|YP_005381096.1| - 3.8e-09 36.9 4.3 0.00034 20.9 0.4 3.8 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|383320255|ref|YP_005381096.1| - 6.2e-09 35.5 1.6 0.00065 19.4 0.0 2.8 2 0 0 2 2 2 2 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|383320255|ref|YP_005381096.1| - 3.5e-07 30.1 0.9 1.1 9.0 0.0 4.2 4 0 0 4 4 4 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|383320255|ref|YP_005381096.1| - 6.2e-06 25.7 0.0 0.086 12.2 0.0 2.9 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|383320255|ref|YP_005381096.1| - 8.7e-06 25.7 0.8 0.0061 16.5 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase NACHT PF05729.12 gi|383320255|ref|YP_005381096.1| - 1.7e-05 24.8 4.5 0.084 12.8 0.5 3.4 3 1 0 3 3 3 2 NACHT domain TniB PF05621.11 gi|383320255|ref|YP_005381096.1| - 2.5e-05 23.8 0.8 2.9 7.3 0.0 4.1 4 0 0 4 4 4 1 Bacterial TniB protein AAA PF00004.29 gi|383320255|ref|YP_005381096.1| - 2.6e-05 24.7 0.8 0.32 11.4 0.0 3.7 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|383320255|ref|YP_005381096.1| - 3.3e-05 23.5 0.5 0.1 12.1 0.0 3.2 3 1 0 3 3 2 2 AAA domain PRK PF00485.18 gi|383320255|ref|YP_005381096.1| - 6.5e-05 22.8 0.3 0.065 13.0 0.0 2.2 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|383320255|ref|YP_005381096.1| - 7.7e-05 23.1 0.6 0.049 14.0 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|383320255|ref|YP_005381096.1| - 0.0001 22.9 2.6 0.26 11.8 0.3 2.2 2 0 0 2 2 2 2 AAA domain MobB PF03205.14 gi|383320255|ref|YP_005381096.1| - 0.0004 20.3 0.2 0.23 11.3 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 gi|383320255|ref|YP_005381096.1| - 0.0004 19.6 1.6 0.41 9.8 0.1 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_24 PF13479.6 gi|383320255|ref|YP_005381096.1| - 0.00042 20.1 0.2 0.91 9.2 0.1 2.4 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|383320255|ref|YP_005381096.1| - 0.00049 19.9 0.4 0.093 12.4 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|383320255|ref|YP_005381096.1| - 0.00081 19.6 0.1 0.32 11.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|383320255|ref|YP_005381096.1| - 0.0009 18.1 0.2 3.7 6.2 0.1 3.8 3 1 0 3 3 3 0 Predicted ATPase of the ABC class AAA_18 PF13238.6 gi|383320255|ref|YP_005381096.1| - 0.0011 19.6 0.1 1.4 9.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|383320255|ref|YP_005381096.1| - 0.0016 18.5 0.7 0.43 10.6 0.0 2.5 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_5 PF07728.14 gi|383320255|ref|YP_005381096.1| - 0.0018 18.3 1.7 3.3 7.7 0.0 3.4 4 0 0 4 4 3 1 AAA domain (dynein-related subfamily) DUF87 PF01935.17 gi|383320255|ref|YP_005381096.1| - 0.0045 17.1 3.7 0.19 11.8 0.1 3.0 4 0 0 4 4 2 1 Helicase HerA, central domain AAA_30 PF13604.6 gi|383320255|ref|YP_005381096.1| - 0.0059 16.3 0.8 2 8.1 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_7 PF12775.7 gi|383320255|ref|YP_005381096.1| - 0.0064 16.0 0.4 2.2 7.8 0.1 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|383320255|ref|YP_005381096.1| - 0.0065 15.8 0.3 0.33 10.2 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin PhoH PF02562.16 gi|383320255|ref|YP_005381096.1| - 0.011 15.2 0.5 5.1 6.5 0.1 2.4 2 0 0 2 2 2 0 PhoH-like protein NTPase_1 PF03266.15 gi|383320255|ref|YP_005381096.1| - 0.013 15.4 1.3 5.3 6.9 0.1 2.6 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.22 gi|383320255|ref|YP_005381096.1| - 0.014 15.8 0.5 1.5 9.2 0.0 2.5 2 0 0 2 2 2 0 RNA helicase ATPase PF06745.13 gi|383320255|ref|YP_005381096.1| - 0.015 14.6 2.7 2.8 7.2 0.0 3.0 3 0 0 3 3 3 0 KaiC Sigma54_activat PF00158.26 gi|383320255|ref|YP_005381096.1| - 0.017 14.8 0.4 6.6 6.4 0.1 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain APS_kinase PF01583.20 gi|383320255|ref|YP_005381096.1| - 0.018 14.9 0.8 2.2 8.2 0.0 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase TIP49 PF06068.13 gi|383320255|ref|YP_005381096.1| - 0.034 13.4 0.6 1.1 8.4 0.1 2.1 2 0 0 2 2 2 0 TIP49 P-loop domain DnaB_C PF03796.15 gi|383320255|ref|YP_005381096.1| - 0.045 13.1 0.1 1.5 8.1 0.0 2.5 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain Roc PF08477.13 gi|383320255|ref|YP_005381096.1| - 0.051 13.8 0.8 9.1 6.5 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Rad17 PF03215.15 gi|383320255|ref|YP_005381096.1| - 0.064 13.2 0.0 0.79 9.6 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain ATP-synt_ab PF00006.25 gi|383320255|ref|YP_005381096.1| - 0.066 12.9 0.1 4.3 6.9 0.0 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain FtsK_SpoIIIE PF01580.18 gi|383320255|ref|YP_005381096.1| - 0.076 12.3 0.7 3.7 6.8 0.1 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family RuvB_N PF05496.12 gi|383320255|ref|YP_005381096.1| - 0.084 12.6 0.2 8.8 6.1 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Pox_A32 PF04665.12 gi|383320255|ref|YP_005381096.1| - 0.094 12.2 0.5 10 5.5 0.1 2.2 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_14 PF13173.6 gi|383320255|ref|YP_005381096.1| - 0.14 12.2 0.0 39 4.3 0.0 3.5 4 0 0 4 4 4 0 AAA domain DEAD PF00270.29 gi|383320255|ref|YP_005381096.1| - 0.14 11.9 0.5 40 3.9 0.2 3.1 3 1 0 3 3 3 0 DEAD/DEAH box helicase TsaE PF02367.17 gi|383320255|ref|YP_005381096.1| - 0.17 11.9 0.6 22 5.1 0.1 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE G-alpha PF00503.20 gi|383320255|ref|YP_005381096.1| - 0.22 10.6 0.2 5.6 6.0 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit SbcCD_C PF13558.6 gi|383320255|ref|YP_005381096.1| - 0.28 11.4 1.5 49 4.2 0.1 3.3 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|383320255|ref|YP_005381096.1| - 0.33 11.1 3.6 2 8.6 0.4 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase CooT PF10133.9 gi|383320256|ref|YP_005381097.1| - 1.9e-11 44.1 1.6 2e-11 44.0 1.6 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT EIIA-man PF03610.16 gi|383320256|ref|YP_005381097.1| - 0.02 15.1 0.1 0.02 15.1 0.1 1.1 1 0 0 1 1 1 0 PTS system fructose IIA component CooT PF10133.9 gi|383320257|ref|YP_005381098.1| - 0.00099 19.3 0.2 0.0012 19.0 0.2 1.2 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT CbiA PF01656.23 gi|383320258|ref|YP_005381099.1| - 3.2e-17 62.8 0.0 6.1e-17 61.9 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|383320258|ref|YP_005381099.1| - 1.1e-13 51.5 0.2 1.8e-13 50.8 0.2 1.4 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|383320258|ref|YP_005381099.1| - 6.8e-13 48.5 0.3 3.7e-11 42.8 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|383320258|ref|YP_005381099.1| - 5.4e-10 39.2 0.0 2.5e-07 30.4 0.1 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|383320258|ref|YP_005381099.1| - 3.4e-07 30.0 2.3 0.00019 21.0 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|383320258|ref|YP_005381099.1| - 3.5e-07 29.9 1.3 3.1e-06 26.8 0.2 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_16 PF13191.6 gi|383320258|ref|YP_005381099.1| - 9.1e-06 26.2 0.0 1.5e-05 25.5 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain MeaB PF03308.16 gi|383320258|ref|YP_005381099.1| - 1.5e-05 24.2 0.1 2.8e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|383320258|ref|YP_005381099.1| - 3.8e-05 23.5 0.1 5.6e-05 22.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|383320258|ref|YP_005381099.1| - 5.1e-05 23.1 0.3 8.7e-05 22.4 0.1 1.6 2 0 0 2 2 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop NTPase_1 PF03266.15 gi|383320258|ref|YP_005381099.1| - 0.00032 20.7 0.1 0.00062 19.7 0.1 1.5 1 0 0 1 1 1 1 NTPase SRP54 PF00448.22 gi|383320258|ref|YP_005381099.1| - 0.00043 20.0 0.4 0.001 18.8 0.4 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain cobW PF02492.19 gi|383320258|ref|YP_005381099.1| - 0.0014 18.2 0.9 0.45 10.1 0.2 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain LpxK PF02606.14 gi|383320258|ref|YP_005381099.1| - 0.002 17.3 2.0 0.017 14.3 0.3 2.3 2 0 0 2 2 2 1 Tetraacyldisaccharide-1-P 4'-kinase APS_kinase PF01583.20 gi|383320258|ref|YP_005381099.1| - 0.0027 17.6 0.6 0.045 13.6 0.0 2.7 3 0 0 3 3 3 1 Adenylylsulphate kinase DUF87 PF01935.17 gi|383320258|ref|YP_005381099.1| - 0.0029 17.7 0.5 0.0071 16.5 0.5 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain MobB PF03205.14 gi|383320258|ref|YP_005381099.1| - 0.0029 17.5 0.1 0.0087 16.0 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 gi|383320258|ref|YP_005381099.1| - 0.0038 17.0 0.1 0.011 15.6 0.1 1.8 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|383320258|ref|YP_005381099.1| - 0.0044 16.8 0.1 0.017 14.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain CTP_synth_N PF06418.14 gi|383320258|ref|YP_005381099.1| - 0.0086 15.4 0.9 0.017 14.5 0.1 1.8 2 0 0 2 2 2 1 CTP synthase N-terminus IstB_IS21 PF01695.17 gi|383320258|ref|YP_005381099.1| - 0.011 15.4 0.1 0.023 14.4 0.0 1.6 2 0 0 2 2 1 0 IstB-like ATP binding protein GTP_EFTU PF00009.27 gi|383320258|ref|YP_005381099.1| - 0.016 14.8 1.8 0.091 12.3 0.1 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain KTI12 PF08433.10 gi|383320258|ref|YP_005381099.1| - 0.019 14.5 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 VirC1 PF07015.11 gi|383320258|ref|YP_005381099.1| - 0.019 14.3 0.1 0.053 12.8 0.1 1.7 2 0 0 2 2 2 0 VirC1 protein AAA_18 PF13238.6 gi|383320258|ref|YP_005381099.1| - 0.024 15.2 0.0 0.057 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain MipZ PF09140.11 gi|383320258|ref|YP_005381099.1| - 0.024 13.9 0.2 0.093 12.0 0.1 2.0 2 0 0 2 2 2 0 ATPase MipZ AAA_33 PF13671.6 gi|383320258|ref|YP_005381099.1| - 0.031 14.4 0.5 0.38 10.9 0.4 2.4 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|383320258|ref|YP_005381099.1| - 0.037 13.9 0.8 1.7 8.5 0.1 2.2 2 0 0 2 2 2 0 RsgA GTPase NACHT PF05729.12 gi|383320258|ref|YP_005381099.1| - 0.04 13.8 0.3 0.068 13.1 0.3 1.3 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|383320258|ref|YP_005381099.1| - 0.057 13.9 0.1 0.12 12.9 0.0 1.5 2 0 0 2 2 1 0 ABC transporter AAA_25 PF13481.6 gi|383320258|ref|YP_005381099.1| - 0.069 12.7 0.4 0.49 9.9 0.1 2.5 3 0 0 3 3 3 0 AAA domain AAA_5 PF07728.14 gi|383320258|ref|YP_005381099.1| - 0.095 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|383320258|ref|YP_005381099.1| - 0.11 12.8 0.1 0.42 10.9 0.1 1.8 2 1 0 2 2 1 0 AAA domain AAA_29 PF13555.6 gi|383320258|ref|YP_005381099.1| - 0.11 12.2 0.2 0.23 11.3 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|383320258|ref|YP_005381099.1| - 0.12 12.1 0.5 0.34 10.6 0.5 1.7 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF4198 PF10670.9 gi|383320259|ref|YP_005381100.1| - 1.3e-26 94.3 2.0 1.5e-26 94.1 2.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) bMG3 PF11974.8 gi|383320259|ref|YP_005381100.1| - 0.0046 17.0 0.0 0.0089 16.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain Methyltransf_25 PF13649.6 gi|383320260|ref|YP_005381101.1| - 3.6e-15 56.4 0.0 6.1e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383320260|ref|YP_005381101.1| - 7.6e-13 48.5 0.0 1.1e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383320260|ref|YP_005381101.1| - 2.3e-12 47.4 0.0 3.4e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|383320260|ref|YP_005381101.1| - 1.1e-10 41.2 0.0 1.2e-10 41.1 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|383320260|ref|YP_005381101.1| - 1.2e-08 34.9 0.0 1.4e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|383320260|ref|YP_005381101.1| - 8.1e-07 29.7 0.0 1.2e-06 29.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|383320260|ref|YP_005381101.1| - 4.8e-06 26.7 0.0 7.8e-06 26.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|383320260|ref|YP_005381101.1| - 7.2e-06 25.7 0.0 8e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|383320260|ref|YP_005381101.1| - 0.00021 20.8 0.0 0.00022 20.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|383320260|ref|YP_005381101.1| - 0.00047 19.5 0.1 0.00073 18.9 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|383320260|ref|YP_005381101.1| - 0.0012 18.5 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 gi|383320260|ref|YP_005381101.1| - 0.0029 17.5 0.0 0.0043 17.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N2227 PF07942.12 gi|383320260|ref|YP_005381101.1| - 0.0031 16.8 0.0 0.0035 16.6 0.0 1.1 1 0 0 1 1 1 1 N2227-like protein AdoMet_MTase PF07757.13 gi|383320260|ref|YP_005381101.1| - 0.0048 17.2 0.0 0.0057 17.0 0.0 1.3 1 1 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase CheR PF01739.18 gi|383320260|ref|YP_005381101.1| - 0.0061 16.1 0.1 0.011 15.3 0.1 1.4 1 1 0 1 1 1 1 CheR methyltransferase, SAM binding domain TPMT PF05724.11 gi|383320260|ref|YP_005381101.1| - 0.0082 15.8 0.0 0.0086 15.7 0.0 1.3 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Mur_ligase PF01225.25 gi|383320260|ref|YP_005381101.1| - 0.0096 16.2 0.0 0.016 15.5 0.0 1.4 1 0 0 1 1 1 1 Mur ligase family, catalytic domain PrmA PF06325.13 gi|383320260|ref|YP_005381101.1| - 0.012 15.0 0.2 0.018 14.4 0.1 1.2 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|383320260|ref|YP_005381101.1| - 0.014 15.0 0.0 0.016 14.8 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) DREV PF05219.12 gi|383320260|ref|YP_005381101.1| - 0.025 13.7 0.0 0.03 13.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_4 PF02390.17 gi|383320260|ref|YP_005381101.1| - 0.041 13.4 0.0 0.055 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase RQC PF09382.10 gi|383320260|ref|YP_005381101.1| - 0.058 13.2 0.0 0.068 13.0 0.0 1.2 1 0 0 1 1 1 0 RQC domain 3HCDH_N PF02737.18 gi|383320260|ref|YP_005381101.1| - 0.065 13.1 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PCMT PF01135.19 gi|383320260|ref|YP_005381101.1| - 0.1 12.4 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|383320260|ref|YP_005381101.1| - 0.14 11.1 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) PALP PF00291.25 gi|383320261|ref|YP_005381102.1| - 8.9e-76 255.1 4.7 1e-75 254.9 4.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Prok-E2_C PF14459.6 gi|383320261|ref|YP_005381102.1| - 0.0047 17.1 0.2 0.017 15.2 0.1 2.0 2 0 0 2 2 2 1 Prokaryotic E2 family C PK_C PF02887.16 gi|383320261|ref|YP_005381102.1| - 0.017 15.4 1.4 0.035 14.3 0.0 2.1 2 1 0 2 2 2 0 Pyruvate kinase, alpha/beta domain FliG_M PF14841.6 gi|383320261|ref|YP_005381102.1| - 0.086 13.1 0.0 11 6.3 0.0 2.3 1 1 1 2 2 2 0 FliG middle domain zinc_ribbon_2 PF13240.6 gi|383320261|ref|YP_005381102.1| - 0.2 11.4 4.5 0.47 10.2 4.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain SBP_bac_5 PF00496.22 gi|383320262|ref|YP_005381103.1| - 6.3e-82 275.5 7.5 8.3e-82 275.1 7.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|383320263|ref|YP_005381104.1| - 5.1e-44 150.2 15.9 5.1e-44 150.2 15.9 1.8 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF21 PF01595.20 gi|383320263|ref|YP_005381104.1| - 0.82 9.3 7.5 4.2 7.0 3.0 2.6 3 0 0 3 3 3 0 Cyclin M transmembrane N-terminal domain BPD_transp_1 PF00528.22 gi|383320264|ref|YP_005381105.1| - 3.1e-41 141.2 8.8 3.1e-41 141.2 8.8 2.8 1 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|383320264|ref|YP_005381105.1| - 3.2e-12 46.2 0.6 3.2e-12 46.2 0.6 3.0 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF3169 PF11368.8 gi|383320264|ref|YP_005381105.1| - 0.042 13.3 6.5 2.6 7.5 5.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) DUF2208 PF09973.9 gi|383320264|ref|YP_005381105.1| - 0.11 12.2 1.7 2.5 7.7 2.1 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2208) ABC_export PF16962.5 gi|383320264|ref|YP_005381105.1| - 0.16 10.3 14.3 0.28 9.6 0.4 2.3 1 1 1 2 2 2 0 Putative ABC exporter ABC_tran PF00005.27 gi|383320265|ref|YP_005381106.1| - 2.1e-27 96.3 0.0 3.2e-27 95.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|383320265|ref|YP_005381106.1| - 6.5e-21 74.6 0.0 1.2e-20 73.8 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|383320265|ref|YP_005381106.1| - 8.4e-07 29.1 0.4 2.4e-05 24.3 0.1 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383320265|ref|YP_005381106.1| - 0.0002 20.9 0.0 0.00039 19.9 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.25 gi|383320265|ref|YP_005381106.1| - 0.0042 16.8 0.0 0.0065 16.1 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.29 gi|383320265|ref|YP_005381106.1| - 0.047 14.1 0.2 0.33 11.4 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|383320265|ref|YP_005381106.1| - 0.07 13.4 1.5 1.3 9.3 1.5 2.1 1 1 0 1 1 1 0 AAA domain AIG1 PF04548.16 gi|383320265|ref|YP_005381106.1| - 0.13 11.6 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 AIG1 family AAA_25 PF13481.6 gi|383320265|ref|YP_005381106.1| - 0.21 11.2 0.1 2.7 7.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|383320266|ref|YP_005381107.1| - 6.2e-33 114.2 0.0 8.4e-33 113.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|383320266|ref|YP_005381107.1| - 4.9e-18 65.4 0.1 8.1e-18 64.7 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|383320266|ref|YP_005381107.1| - 6e-10 39.4 0.1 6.4e-05 22.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383320266|ref|YP_005381107.1| - 5.7e-05 22.7 0.1 0.00012 21.6 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|383320266|ref|YP_005381107.1| - 0.00055 20.2 0.1 0.0051 17.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|383320266|ref|YP_005381107.1| - 0.00079 19.9 0.1 0.0067 16.9 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 gi|383320266|ref|YP_005381107.1| - 0.0032 17.2 0.0 0.0032 17.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.6 gi|383320266|ref|YP_005381107.1| - 0.0042 17.5 0.0 0.0082 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain PRK PF00485.18 gi|383320266|ref|YP_005381107.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_7 PF12775.7 gi|383320266|ref|YP_005381107.1| - 0.013 15.0 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|383320266|ref|YP_005381107.1| - 0.019 14.5 0.0 2.8 7.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|383320266|ref|YP_005381107.1| - 0.02 14.9 0.0 0.16 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) tRNA_lig_kinase PF08303.11 gi|383320266|ref|YP_005381107.1| - 0.032 14.3 0.0 0.061 13.4 0.0 1.4 1 0 0 1 1 1 0 tRNA ligase kinase domain TniB PF05621.11 gi|383320266|ref|YP_005381107.1| - 0.035 13.5 0.3 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein Sigma54_activat PF00158.26 gi|383320266|ref|YP_005381107.1| - 0.14 11.8 0.1 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_13 PF13166.6 gi|383320266|ref|YP_005381107.1| - 0.24 10.0 0.8 1.4 7.5 0.1 2.2 3 0 0 3 3 3 0 AAA domain MCR_C PF04609.12 gi|383320267|ref|YP_005381108.1| - 1.1e-121 405.1 0.1 1.5e-121 404.7 0.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF4436 PF14494.6 gi|383320267|ref|YP_005381108.1| - 0.1 11.9 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4436) DUF2113 PF09886.9 gi|383320268|ref|YP_005381109.1| - 1.4e-65 220.1 0.0 1.7e-65 219.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) DUF413 PF04219.12 gi|383320268|ref|YP_005381109.1| - 0.055 13.5 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF BcrAD_BadFG PF01869.20 gi|383320269|ref|YP_005381110.1| - 9.9e-59 199.0 5.3 9.9e-59 199.0 5.3 1.5 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_C PF02782.16 gi|383320269|ref|YP_005381110.1| - 1e-05 25.4 0.1 2.1e-05 24.3 0.1 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.6 gi|383320269|ref|YP_005381110.1| - 0.0081 16.6 1.5 0.039 14.4 1.5 2.3 1 1 0 1 1 1 1 Cell division protein FtsA DUF2112 PF09885.9 gi|383320270|ref|YP_005381111.1| - 1.9e-67 225.8 0.1 2.1e-67 225.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) RelB PF04221.12 gi|383320270|ref|YP_005381111.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 RelB antitoxin DUF2102 PF09875.9 gi|383320271|ref|YP_005381112.1| - 1.8e-43 146.4 0.0 2.6e-43 146.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) DUF3420 PF11900.8 gi|383320271|ref|YP_005381112.1| - 0.28 11.4 2.8 0.3 11.3 0.8 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3420) Fer2_4 PF13510.6 gi|383320272|ref|YP_005381113.1| - 0.00014 21.8 0.1 0.0079 16.2 0.0 2.4 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Pro_isomerase PF00160.21 gi|383320272|ref|YP_005381113.1| - 0.0026 18.1 0.1 5.4 7.3 0.0 3.8 4 0 0 4 4 4 2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABC_tran PF00005.27 gi|383320273|ref|YP_005381114.1| - 6.1e-52 175.8 0.0 9.5e-26 90.9 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|383320273|ref|YP_005381114.1| - 2.8e-07 30.6 4.1 0.15 11.9 0.2 3.8 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|383320273|ref|YP_005381114.1| - 1.6e-06 28.1 0.5 0.0085 16.0 0.1 2.7 2 0 0 2 2 2 2 RsgA GTPase SMC_N PF02463.19 gi|383320273|ref|YP_005381114.1| - 3.1e-06 26.8 7.5 0.014 14.8 0.2 3.9 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|383320273|ref|YP_005381114.1| - 1.5e-05 25.5 0.1 0.14 12.6 0.0 2.8 3 0 0 3 3 3 2 AAA ATPase domain MMR_HSR1 PF01926.23 gi|383320273|ref|YP_005381114.1| - 0.00055 20.0 1.3 0.37 10.9 0.3 3.2 3 0 0 3 3 3 1 50S ribosome-binding GTPase NACHT PF05729.12 gi|383320273|ref|YP_005381114.1| - 0.0012 18.8 0.4 1.6 8.6 0.0 3.7 4 0 0 4 4 4 1 NACHT domain AAA_30 PF13604.6 gi|383320273|ref|YP_005381114.1| - 0.002 17.9 0.3 0.73 9.5 0.0 2.7 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.12 gi|383320273|ref|YP_005381114.1| - 0.004 16.5 0.0 0.12 11.6 0.0 2.5 2 0 0 2 2 2 1 Zeta toxin AAA_23 PF13476.6 gi|383320273|ref|YP_005381114.1| - 0.0041 17.7 1.7 1.6 9.2 0.1 2.5 2 0 0 2 2 2 2 AAA domain Collectrin PF16959.5 gi|383320273|ref|YP_005381114.1| - 0.005 16.6 0.0 0.0098 15.7 0.0 1.4 1 0 0 1 1 1 1 Renal amino acid transporter ATP-synt_ab PF00006.25 gi|383320273|ref|YP_005381114.1| - 0.0054 16.4 0.0 2.9 7.5 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.14 gi|383320273|ref|YP_005381114.1| - 0.0058 16.5 0.3 4.5 7.2 0.1 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|383320273|ref|YP_005381114.1| - 0.0081 16.4 0.2 3.6 7.9 0.0 3.1 3 0 0 3 3 3 1 AAA domain PhoH PF02562.16 gi|383320273|ref|YP_005381114.1| - 0.011 15.2 0.7 4.8 6.6 0.0 3.2 2 1 0 2 2 2 0 PhoH-like protein AAA_29 PF13555.6 gi|383320273|ref|YP_005381114.1| - 0.014 15.1 2.1 1.8 8.4 0.2 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|383320273|ref|YP_005381114.1| - 0.019 15.2 0.0 3.7 7.9 0.0 3.2 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit ATPase PF06745.13 gi|383320273|ref|YP_005381114.1| - 0.02 14.3 2.7 6.8 6.0 0.1 3.3 3 0 0 3 3 3 0 KaiC PIF1 PF05970.14 gi|383320273|ref|YP_005381114.1| - 0.038 13.2 0.8 4.9 6.2 0.0 2.8 4 0 0 4 4 4 0 PIF1-like helicase PRK PF00485.18 gi|383320273|ref|YP_005381114.1| - 0.047 13.4 0.4 3.3 7.4 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|383320273|ref|YP_005381114.1| - 0.077 12.2 3.0 4.4 6.4 0.1 2.7 3 0 0 3 3 3 0 NB-ARC domain IstB_IS21 PF01695.17 gi|383320273|ref|YP_005381114.1| - 0.1 12.3 0.8 22 4.7 0.0 3.2 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_13 PF13166.6 gi|383320273|ref|YP_005381114.1| - 0.12 11.0 0.0 13 4.3 0.0 2.9 3 0 0 3 3 3 0 AAA domain Peptidase_C74 PF12387.8 gi|383320273|ref|YP_005381114.1| - 0.13 11.7 0.8 0.36 10.3 0.6 1.8 1 1 0 1 1 1 0 Pestivirus NS2 peptidase cobW PF02492.19 gi|383320273|ref|YP_005381114.1| - 0.14 11.7 2.4 16 5.1 0.1 3.6 4 0 0 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|383320273|ref|YP_005381114.1| - 0.15 12.2 0.4 5 7.3 0.0 2.9 2 1 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|383320273|ref|YP_005381114.1| - 1.8 8.6 4.8 70 3.4 0.4 3.9 4 0 0 4 4 4 0 Helicase HerA, central domain Hydrolase PF00702.26 gi|383320274|ref|YP_005381115.1| - 5.1e-24 85.7 0.1 8.4e-24 85.0 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|383320274|ref|YP_005381115.1| - 0.00035 20.4 0.1 0.83 9.3 0.0 2.6 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|383320274|ref|YP_005381115.1| - 0.00083 19.4 0.0 0.0055 16.8 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|383320274|ref|YP_005381115.1| - 0.0096 16.0 0.0 0.071 13.2 0.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|383320274|ref|YP_005381115.1| - 0.017 15.5 0.0 0.061 13.7 0.0 1.9 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase HTH_IclR PF09339.10 gi|383320274|ref|YP_005381115.1| - 0.04 13.7 0.0 0.61 9.9 0.0 2.6 3 0 0 3 3 3 0 IclR helix-turn-helix domain E1-E2_ATPase PF00122.20 gi|383320275|ref|YP_005381116.1| - 1.1e-49 168.4 2.5 1.1e-49 168.4 2.5 2.0 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|383320275|ref|YP_005381116.1| - 7.1e-43 147.3 2.7 1.3e-42 146.5 2.7 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|383320275|ref|YP_005381116.1| - 7.4e-05 23.2 0.1 0.00037 21.0 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|383320275|ref|YP_005381116.1| - 0.0016 18.2 3.5 0.018 14.8 2.0 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF2148 PF09918.9 gi|383320275|ref|YP_005381116.1| - 0.46 10.6 3.7 1.5 8.9 3.7 1.9 1 0 0 1 1 1 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) HMA PF00403.26 gi|383320276|ref|YP_005381117.1| - 1.9e-11 44.2 0.1 2.3e-11 43.9 0.1 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain TrmB PF01978.19 gi|383320277|ref|YP_005381118.1| - 8.6e-21 73.6 0.1 1.5e-20 72.8 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|383320277|ref|YP_005381118.1| - 8.8e-10 38.2 0.0 1.3e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PLDc_2 PF13091.6 gi|383320277|ref|YP_005381118.1| - 3.7e-06 26.8 0.0 7.5e-06 25.9 0.0 1.5 1 1 0 1 1 1 1 PLD-like domain HTH_IclR PF09339.10 gi|383320277|ref|YP_005381118.1| - 7.1e-05 22.5 0.1 0.00028 20.6 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain GntR PF00392.21 gi|383320277|ref|YP_005381118.1| - 0.00047 19.7 0.0 0.001 18.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|383320277|ref|YP_005381118.1| - 0.0011 18.8 0.0 0.0037 17.1 0.0 1.8 2 0 0 2 2 1 1 MarR family HTH_29 PF13551.6 gi|383320277|ref|YP_005381118.1| - 0.0023 17.9 0.5 0.0051 16.8 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix PadR PF03551.14 gi|383320277|ref|YP_005381118.1| - 0.0029 17.5 0.0 0.0057 16.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|383320277|ref|YP_005381118.1| - 0.0041 17.5 0.0 0.0071 16.7 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_28 PF13518.6 gi|383320277|ref|YP_005381118.1| - 0.0056 16.8 0.9 0.009 16.1 0.1 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|383320277|ref|YP_005381118.1| - 0.007 16.7 0.0 0.021 15.2 0.0 1.8 1 1 1 2 2 2 1 Transcriptional regulator HTH_5 PF01022.20 gi|383320277|ref|YP_005381118.1| - 0.021 14.7 0.0 0.047 13.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|383320277|ref|YP_005381118.1| - 0.022 14.3 0.0 0.081 12.5 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2250 PF10007.9 gi|383320277|ref|YP_005381118.1| - 0.031 14.4 0.0 0.085 13.0 0.0 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.22 gi|383320277|ref|YP_005381118.1| - 0.036 14.0 0.0 0.096 12.6 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|383320277|ref|YP_005381118.1| - 0.041 13.9 0.0 0.074 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|383320277|ref|YP_005381118.1| - 0.048 14.1 0.0 0.33 11.5 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|383320277|ref|YP_005381118.1| - 0.14 12.4 0.1 0.84 9.9 0.0 2.1 1 1 1 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF294 PF03445.13 gi|383320278|ref|YP_005381119.1| - 2.3e-28 98.7 0.0 5e-28 97.6 0.0 1.5 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DUF294_C PF10335.9 gi|383320278|ref|YP_005381119.1| - 7.6e-24 84.2 0.0 6.6e-23 81.1 0.0 2.1 2 0 0 2 2 2 1 Putative nucleotidyltransferase substrate binding domain AP_endonuc_2 PF01261.24 gi|383320278|ref|YP_005381119.1| - 4.5e-17 62.2 0.0 7e-17 61.6 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel GlnE PF03710.15 gi|383320278|ref|YP_005381119.1| - 0.017 14.5 0.0 0.058 12.8 0.0 1.8 2 0 0 2 2 2 0 Glutamate-ammonia ligase adenylyltransferase DUF3375 PF11855.8 gi|383320279|ref|YP_005381120.1| - 0.0082 15.1 3.4 0.0093 14.9 3.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3375) RseC_MucC PF04246.12 gi|383320279|ref|YP_005381120.1| - 0.65 10.0 2.3 0.91 9.5 2.3 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC tRNA_anti-codon PF01336.25 gi|383320280|ref|YP_005381121.1| - 0.0021 18.0 0.1 0.19 11.7 0.0 3.1 3 0 0 3 3 3 1 OB-fold nucleic acid binding domain Rad50_zn_hook PF04423.14 gi|383320280|ref|YP_005381121.1| - 0.45 10.4 2.6 3.4 7.6 0.7 2.5 2 0 0 2 2 2 0 Rad50 zinc hook motif ThrE PF06738.12 gi|383320284|ref|YP_005381125.1| - 0.13 11.6 1.9 0.12 11.7 1.9 1.0 1 0 0 1 1 1 0 Putative threonine/serine exporter DUF4131 PF13567.6 gi|383320284|ref|YP_005381125.1| - 4.3 6.9 9.4 4.8 6.8 9.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Lactamase_B PF00753.27 gi|383320285|ref|YP_005381126.1| - 2.4e-25 89.7 0.3 2.8e-25 89.5 0.3 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|383320285|ref|YP_005381126.1| - 0.00013 21.5 0.0 0.00038 20.0 0.0 1.7 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|383320285|ref|YP_005381126.1| - 0.001 18.6 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Alba PF01918.21 gi|383320286|ref|YP_005381127.1| - 4.2e-21 74.5 0.6 6.8e-21 73.9 0.6 1.3 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|383320286|ref|YP_005381127.1| - 0.014 15.3 0.2 0.023 14.7 0.1 1.4 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P zinc_ribbon_2 PF13240.6 gi|383320287|ref|YP_005381128.1| - 0.022 14.5 2.4 0.022 14.5 2.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|383320287|ref|YP_005381128.1| - 0.054 13.4 6.5 0.074 12.9 6.5 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.19 gi|383320287|ref|YP_005381128.1| - 0.2 11.7 4.9 0.2 11.7 4.9 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1289 PF06945.13 gi|383320287|ref|YP_005381128.1| - 1.2 9.0 8.1 0.48 10.3 3.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1289) NRDD PF13597.6 gi|383320287|ref|YP_005381128.1| - 3.6 6.3 5.5 3.7 6.2 5.5 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Aminotran_1_2 PF00155.21 gi|383320288|ref|YP_005381129.1| - 1.9e-57 195.1 0.0 2.2e-57 194.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|383320288|ref|YP_005381129.1| - 8.3e-07 28.6 0.0 1.2e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.13 gi|383320288|ref|YP_005381129.1| - 1.2e-06 27.7 0.0 1.9e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.20 gi|383320288|ref|YP_005381129.1| - 3.8e-06 25.7 0.0 6.8e-06 24.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|383320288|ref|YP_005381129.1| - 4.7e-06 25.8 0.0 9.2e-06 24.8 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V AAA_18 PF13238.6 gi|383320289|ref|YP_005381130.1| - 6.6e-22 78.5 0.0 8.5e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|383320289|ref|YP_005381130.1| - 9.1e-06 25.9 0.2 0.00055 20.1 0.2 2.9 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|383320289|ref|YP_005381130.1| - 0.0017 18.6 0.1 0.012 15.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|383320289|ref|YP_005381130.1| - 0.0024 18.3 0.2 0.49 10.8 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|383320289|ref|YP_005381130.1| - 0.011 15.5 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|383320289|ref|YP_005381130.1| - 0.017 14.1 0.2 0.14 11.1 0.1 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|383320289|ref|YP_005381130.1| - 0.038 14.3 0.0 0.2 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain dNK PF01712.19 gi|383320289|ref|YP_005381130.1| - 0.053 13.4 0.0 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase NTPase_1 PF03266.15 gi|383320289|ref|YP_005381130.1| - 0.06 13.2 0.2 0.21 11.5 0.1 2.0 2 1 0 2 2 2 0 NTPase SelB-wing_2 PF09106.11 gi|383320289|ref|YP_005381130.1| - 0.066 13.4 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 Elongation factor SelB, winged helix AAA PF00004.29 gi|383320289|ref|YP_005381130.1| - 0.066 13.6 0.0 0.19 12.2 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|383320289|ref|YP_005381130.1| - 0.08 12.7 0.2 0.19 11.5 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|383320289|ref|YP_005381130.1| - 0.084 12.2 0.1 1.9 7.8 0.0 2.1 2 0 0 2 2 2 0 KaiC CoaE PF01121.20 gi|383320289|ref|YP_005381130.1| - 0.14 11.8 0.4 0.39 10.4 0.1 1.8 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA_30 PF13604.6 gi|383320289|ref|YP_005381130.1| - 0.93 9.2 3.2 2.2 7.9 0.5 2.3 2 1 0 2 2 2 0 AAA domain CDP-OH_P_transf PF01066.21 gi|383320290|ref|YP_005381131.1| - 4.2e-11 43.4 4.6 4.2e-11 43.4 4.6 2.1 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase UPF0179 PF03684.13 gi|383320293|ref|YP_005381134.1| - 1.3e-50 170.9 2.3 1.5e-50 170.7 2.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Amastin PF07344.11 gi|383320294|ref|YP_005381135.1| - 0.0094 15.8 4.5 0.0094 15.8 4.5 2.0 2 0 0 2 2 2 1 Amastin surface glycoprotein AC_N PF16214.5 gi|383320294|ref|YP_005381135.1| - 1.1 8.4 4.8 7.1 5.6 1.3 2.2 1 1 1 2 2 2 0 Adenylyl cyclase N-terminal extracellular and transmembrane region NPCC PF08058.11 gi|383320294|ref|YP_005381135.1| - 1.3 9.1 6.1 1.2 9.1 0.1 2.4 1 1 1 2 2 2 0 Nuclear pore complex component DUF4231 PF14015.6 gi|383320294|ref|YP_005381135.1| - 8.7 6.9 10.7 0.2 12.1 1.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) PadR PF03551.14 gi|383320295|ref|YP_005381136.1| - 5.3e-21 74.4 0.4 8.4e-21 73.7 0.4 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HxlR PF01638.17 gi|383320295|ref|YP_005381136.1| - 0.00034 20.4 0.1 0.00041 20.1 0.1 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|383320295|ref|YP_005381136.1| - 0.028 14.6 0.0 0.038 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FKBP_C PF00254.28 gi|383320296|ref|YP_005381137.1| - 2.5e-14 53.4 0.4 1.3e-13 51.1 0.2 2.3 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|383320296|ref|YP_005381137.1| - 0.0027 17.8 0.2 0.0049 16.9 0.2 1.5 1 0 0 1 1 1 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|383320297|ref|YP_005381138.1| - 5.5e-14 52.3 0.7 6.2e-11 42.5 0.0 2.7 1 1 1 2 2 2 2 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|383320297|ref|YP_005381138.1| - 0.00016 21.7 0.5 0.00033 20.7 0.5 1.6 1 0 0 1 1 1 1 FKBP26_C-terminal CYTH PF01928.21 gi|383320298|ref|YP_005381139.1| - 5.3e-36 124.2 4.5 5.9e-36 124.1 4.5 1.0 1 0 0 1 1 1 1 CYTH domain Nitroreductase PF00881.24 gi|383320299|ref|YP_005381140.1| - 5.9e-37 127.3 0.2 2.1e-21 76.7 0.2 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|383320299|ref|YP_005381140.1| - 5e-12 45.8 0.0 9.1e-05 22.1 0.0 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase ACT PF01842.25 gi|383320300|ref|YP_005381141.1| - 0.00012 21.7 0.4 0.00029 20.5 0.1 1.8 2 0 0 2 2 2 1 ACT domain UPF0180 PF03698.13 gi|383320300|ref|YP_005381141.1| - 0.029 14.6 0.2 0.075 13.2 0.2 1.8 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) Homoserine_dh PF00742.19 gi|383320301|ref|YP_005381142.1| - 5.3e-55 186.0 0.0 7.9e-55 185.4 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|383320301|ref|YP_005381142.1| - 7.4e-13 49.2 0.1 1.2e-12 48.5 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|383320301|ref|YP_005381142.1| - 2.6e-11 43.7 0.2 5e-11 42.8 0.2 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.22 gi|383320301|ref|YP_005381142.1| - 0.00023 22.0 0.0 0.0005 20.9 0.0 1.5 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_N PF00044.24 gi|383320301|ref|YP_005381142.1| - 0.0024 18.2 0.6 0.0051 17.1 0.5 1.7 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|383320301|ref|YP_005381142.1| - 0.0067 16.7 0.1 0.015 15.5 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|383320301|ref|YP_005381142.1| - 0.0076 16.5 0.3 0.013 15.7 0.3 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|383320301|ref|YP_005381142.1| - 0.01 16.4 0.0 0.089 13.4 0.0 2.5 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|383320301|ref|YP_005381142.1| - 0.018 15.1 0.4 0.039 14.0 0.4 1.6 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Ldh_1_N PF00056.23 gi|383320301|ref|YP_005381142.1| - 0.04 14.0 1.3 0.36 10.9 0.2 2.3 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DUF1611_N PF17396.2 gi|383320301|ref|YP_005381142.1| - 0.051 13.8 0.0 0.18 12.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|383320301|ref|YP_005381142.1| - 0.063 12.6 0.1 0.13 11.6 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|383320301|ref|YP_005381142.1| - 0.065 12.8 0.4 0.2 11.2 0.4 1.8 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain zf-C4_Topoisom PF01396.19 gi|383320302|ref|YP_005381143.1| - 0.022 14.5 1.2 0.5 10.2 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ACC PF17848.1 gi|383320302|ref|YP_005381143.1| - 0.046 13.8 2.5 3.9 7.6 0.2 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_9 PF14369.6 gi|383320302|ref|YP_005381143.1| - 0.078 13.2 0.3 0.24 11.7 0.0 2.0 2 0 0 2 2 2 0 zinc-ribbon Zn-ribbon_8 PF09723.10 gi|383320302|ref|YP_005381143.1| - 0.14 12.3 2.5 4.6 7.4 2.4 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|383320302|ref|YP_005381143.1| - 6.4 6.9 6.5 1.7 8.7 0.2 2.5 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain CbiA PF01656.23 gi|383320303|ref|YP_005381144.1| - 0.048 13.7 0.0 0.077 13.1 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain T3SSipB PF16535.5 gi|383320303|ref|YP_005381144.1| - 0.058 13.9 0.5 0.095 13.2 0.5 1.4 1 0 0 1 1 1 0 Type III cell invasion protein SipB YccV-like PF08755.11 gi|383320303|ref|YP_005381144.1| - 0.11 13.0 0.2 0.55 10.8 0.0 2.1 2 1 0 2 2 2 0 Hemimethylated DNA-binding protein YccV like BLOC1_2 PF10046.9 gi|383320303|ref|YP_005381144.1| - 3.1 8.1 7.6 1.2 9.5 1.4 2.8 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Radical_SAM PF04055.21 gi|383320306|ref|YP_005381147.1| - 5.7e-13 49.6 0.5 1e-12 48.8 0.5 1.5 1 1 0 1 1 1 1 Radical SAM superfamily LIAS_N PF16881.5 gi|383320306|ref|YP_005381147.1| - 0.00098 19.5 0.0 0.002 18.5 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family Spore_GerAC PF05504.11 gi|383320306|ref|YP_005381147.1| - 0.13 12.4 0.0 0.21 11.8 0.0 1.2 1 0 0 1 1 1 0 Spore germination B3/ GerAC like, C-terminal E1_dh PF00676.20 gi|383320307|ref|YP_005381148.1| - 1.3e-92 310.0 0.0 1.5e-92 309.7 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|383320307|ref|YP_005381148.1| - 8.3e-07 28.5 0.0 1.2e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|383320307|ref|YP_005381148.1| - 6.9e-06 25.9 0.3 2.8e-05 24.0 0.3 1.9 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|383320307|ref|YP_005381148.1| - 0.0089 15.0 0.0 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.24 gi|383320308|ref|YP_005381149.1| - 1.3e-45 155.2 0.2 2e-45 154.6 0.2 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|383320308|ref|YP_005381149.1| - 4.4e-38 130.0 0.0 7.9e-38 129.1 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|383320308|ref|YP_005381149.1| - 0.018 15.3 0.0 0.034 14.5 0.0 1.4 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II 2-oxoacid_dh PF00198.23 gi|383320309|ref|YP_005381150.1| - 8.9e-87 290.4 0.1 1.1e-86 290.0 0.1 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|383320309|ref|YP_005381150.1| - 9.8e-21 73.4 1.8 2e-20 72.4 1.8 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|383320309|ref|YP_005381150.1| - 7e-16 58.3 0.2 1.8e-15 57.0 0.2 1.7 1 0 0 1 1 1 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|383320309|ref|YP_005381150.1| - 2.6e-06 27.2 2.1 0.0019 18.0 0.5 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like GCV_H PF01597.19 gi|383320309|ref|YP_005381150.1| - 0.11 12.4 0.5 0.27 11.1 0.5 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein Pyr_redox_2 PF07992.14 gi|383320310|ref|YP_005381151.1| - 1e-44 152.9 0.3 1.8e-44 152.2 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|383320310|ref|YP_005381151.1| - 1.3e-36 125.2 0.4 2.3e-36 124.4 0.4 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|383320310|ref|YP_005381151.1| - 9.1e-12 45.4 0.4 5.1e-07 30.2 0.1 3.1 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|383320310|ref|YP_005381151.1| - 7.7e-08 31.8 0.6 2e-07 30.5 0.0 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|383320310|ref|YP_005381151.1| - 1.8e-07 30.9 0.2 1.8e-07 30.9 0.2 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|383320310|ref|YP_005381151.1| - 3.9e-07 29.6 0.0 0.0076 15.5 0.2 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|383320310|ref|YP_005381151.1| - 8.9e-06 25.8 3.7 0.00022 21.4 0.2 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|383320310|ref|YP_005381151.1| - 1.1e-05 24.7 0.5 1.1e-05 24.7 0.5 2.9 4 0 0 4 4 4 2 FAD binding domain HI0933_like PF03486.14 gi|383320310|ref|YP_005381151.1| - 1.5e-05 23.9 5.7 0.00021 20.2 0.1 3.0 2 1 1 3 3 3 2 HI0933-like protein Thi4 PF01946.17 gi|383320310|ref|YP_005381151.1| - 7.8e-05 22.0 0.9 0.0048 16.2 0.1 2.3 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|383320310|ref|YP_005381151.1| - 7.8e-05 22.1 3.6 0.00012 21.5 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain Trp_halogenase PF04820.14 gi|383320310|ref|YP_005381151.1| - 0.00029 19.8 5.1 0.00049 19.1 0.0 2.9 3 0 0 3 3 3 1 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|383320310|ref|YP_005381151.1| - 0.0018 17.6 3.3 0.013 14.8 0.8 3.0 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|383320310|ref|YP_005381151.1| - 0.0023 17.6 11.5 0.012 15.2 0.8 3.7 2 1 1 4 4 4 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|383320310|ref|YP_005381151.1| - 0.06 12.4 8.8 0.036 13.1 1.0 3.1 2 2 1 3 3 3 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|383320310|ref|YP_005381151.1| - 0.084 12.9 0.9 1.1 9.2 0.1 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_7 PF13241.6 gi|383320310|ref|YP_005381151.1| - 0.23 11.9 1.0 3.5 8.1 0.2 2.7 2 0 0 2 2 2 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|383320310|ref|YP_005381151.1| - 0.34 10.4 2.4 3.5 7.2 0.1 2.9 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RCC1 PF00415.18 gi|383320311|ref|YP_005381152.1| - 9.4e-63 208.7 24.8 1.6e-10 41.4 0.0 9.4 9 1 0 9 9 9 9 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 gi|383320311|ref|YP_005381152.1| - 2.8e-57 189.5 32.9 3e-10 39.6 0.3 7.2 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat RHS_repeat PF05593.14 gi|383320311|ref|YP_005381152.1| - 0.059 13.9 3.9 1.4 9.5 0.6 3.4 3 0 0 3 3 3 0 RHS Repeat Arylsulfotran_2 PF14269.6 gi|383320311|ref|YP_005381152.1| - 0.076 12.4 0.4 7 5.9 0.1 2.8 2 2 0 2 2 2 0 Arylsulfotransferase (ASST) DUF3696 PF12476.8 gi|383320311|ref|YP_005381152.1| - 0.22 11.9 11.5 2.6 8.5 0.4 5.7 7 0 0 7 7 7 0 Protein of unknown function (DUF3696) ABC2_membrane_2 PF12679.7 gi|383320312|ref|YP_005381153.1| - 3.6e-09 36.3 22.9 4.5e-08 32.7 22.9 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383320312|ref|YP_005381153.1| - 1.8e-07 31.3 15.2 1.8e-07 31.3 15.2 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383320312|ref|YP_005381153.1| - 1.5 8.3 29.6 0.39 10.3 24.9 2.2 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|383320313|ref|YP_005381154.1| - 5e-24 85.1 22.3 6.1e-24 84.8 22.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383320313|ref|YP_005381154.1| - 1.1e-05 25.4 21.8 1.1e-05 25.4 21.8 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383320313|ref|YP_005381154.1| - 0.0054 15.9 35.4 0.0071 15.5 35.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF1072 PF06380.11 gi|383320313|ref|YP_005381154.1| - 2.8 7.9 4.9 29 4.7 0.0 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1072) DUF1495 PF07381.11 gi|383320314|ref|YP_005381155.1| - 2.9e-16 59.0 0.1 3.6e-16 58.7 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) TGS PF02824.21 gi|383320314|ref|YP_005381155.1| - 0.058 13.4 0.0 0.075 13.1 0.0 1.3 1 0 0 1 1 1 0 TGS domain BPL_LplA_LipB PF03099.19 gi|383320315|ref|YP_005381156.1| - 1e-13 51.3 0.0 1.6e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family 2-Hacid_dh PF00389.30 gi|383320315|ref|YP_005381156.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Rhodanese PF00581.20 gi|383320317|ref|YP_005381158.1| - 6.8e-19 68.4 0.0 8.3e-19 68.1 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain Ibs_toxin PF13956.6 gi|383320318|ref|YP_005381159.1| - 0.042 13.9 0.8 0.072 13.1 0.8 1.4 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system AMP-binding PF00501.28 gi|383320319|ref|YP_005381160.1| - 2.6e-116 388.7 0.0 3.1e-116 388.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|383320319|ref|YP_005381160.1| - 3.1e-18 66.5 0.0 1.2e-17 64.6 0.0 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DAHP_synth_1 PF00793.20 gi|383320319|ref|YP_005381160.1| - 0.2 10.5 0.0 2.7 6.8 0.0 2.1 2 0 0 2 2 2 0 DAHP synthetase I family Cupin_2 PF07883.11 gi|383320320|ref|YP_005381161.1| - 7.7e-16 57.6 0.0 1.4e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.7 gi|383320320|ref|YP_005381161.1| - 1.3e-11 44.3 0.3 2.8e-11 43.3 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|383320320|ref|YP_005381161.1| - 9.1e-07 28.9 0.1 1.7e-06 28.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|383320320|ref|YP_005381161.1| - 0.0024 18.2 0.0 0.0035 17.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 gi|383320320|ref|YP_005381161.1| - 0.0095 15.8 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|383320320|ref|YP_005381161.1| - 0.057 13.1 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) MannoseP_isomer PF01050.18 gi|383320320|ref|YP_005381161.1| - 0.091 12.6 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase AMP-binding PF00501.28 gi|383320321|ref|YP_005381162.1| - 6.4e-77 258.9 0.0 8.2e-77 258.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|383320321|ref|YP_005381162.1| - 9.5e-25 87.4 2.4 2.6e-24 86.0 2.4 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Holin_SPP1 PF04688.13 gi|383320322|ref|YP_005381163.1| - 0.05 13.8 0.1 0.058 13.6 0.1 1.1 1 0 0 1 1 1 0 SPP1 phage holin DUF4131 PF13567.6 gi|383320322|ref|YP_005381163.1| - 0.07 12.8 0.1 0.082 12.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3810 PF12725.7 gi|383320322|ref|YP_005381163.1| - 0.15 11.4 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Glutaredoxin PF00462.24 gi|383320324|ref|YP_005381165.1| - 7.9e-13 48.4 0.0 1.1e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|383320324|ref|YP_005381165.1| - 3.7e-05 23.7 0.1 4.9e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin domain GST_N_3 PF13417.6 gi|383320324|ref|YP_005381165.1| - 0.00028 21.2 0.0 0.00029 21.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|383320324|ref|YP_005381165.1| - 0.00066 20.0 0.1 0.00083 19.7 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_4 PF13462.6 gi|383320324|ref|YP_005381165.1| - 0.0037 17.4 0.2 1.6 8.9 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 gi|383320324|ref|YP_005381165.1| - 0.1 13.1 0.3 1.2 9.6 0.3 2.0 1 1 0 1 1 1 0 Thioredoxin-like domain DUF5412 PF17428.2 gi|383320325|ref|YP_005381166.1| - 0.025 14.4 0.5 0.025 14.4 0.5 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5412) DUF373 PF04123.13 gi|383320326|ref|YP_005381167.1| - 0.025 14.1 1.2 0.026 14.0 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF4401 PF14351.6 gi|383320326|ref|YP_005381167.1| - 0.026 13.8 8.3 0.03 13.6 8.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) Phage_holin_2_4 PF16082.5 gi|383320326|ref|YP_005381167.1| - 0.1 12.3 1.9 0.14 11.9 1.9 1.3 1 1 0 1 1 1 0 Bacteriophage holin family, superfamily II-like Neurensin PF14927.6 gi|383320326|ref|YP_005381167.1| - 0.11 12.2 2.9 0.21 11.3 3.0 1.5 1 1 0 1 1 1 0 Neurensin DUF872 PF05915.12 gi|383320326|ref|YP_005381167.1| - 0.45 10.7 5.6 0.59 10.3 5.6 1.3 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF3040 PF11239.8 gi|383320326|ref|YP_005381167.1| - 0.66 10.3 8.6 0.87 9.9 8.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Ribosomal_L7Ae PF01248.26 gi|383320327|ref|YP_005381168.1| - 2.6e-26 91.2 0.5 3.2e-26 90.9 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|383320327|ref|YP_005381168.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 PELOTA RNA binding domain DUF1269 PF06897.12 gi|383320327|ref|YP_005381168.1| - 0.013 15.7 2.1 1.4 9.3 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) eRF1_3 PF03465.15 gi|383320327|ref|YP_005381168.1| - 0.021 15.3 0.1 0.026 15.0 0.1 1.3 1 0 0 1 1 1 0 eRF1 domain 3 Ribosomal_S28e PF01200.18 gi|383320328|ref|YP_005381169.1| - 1.1e-28 99.0 1.4 1.3e-28 98.8 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|383320329|ref|YP_005381170.1| - 1.3e-19 70.2 1.4 1.4e-19 70.1 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|383320329|ref|YP_005381170.1| - 2.6e-07 30.5 1.7 3.7e-07 30.0 1.7 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|383320329|ref|YP_005381170.1| - 0.0043 17.1 0.2 0.0071 16.4 0.2 1.2 1 0 0 1 1 1 1 YHS domain ICAM_N PF03921.14 gi|383320329|ref|YP_005381170.1| - 0.031 13.9 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 Intercellular adhesion molecule (ICAM), N-terminal domain DUF3268 PF11672.8 gi|383320329|ref|YP_005381170.1| - 0.051 13.9 0.1 0.051 13.9 0.1 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain VATC PF18716.1 gi|383320329|ref|YP_005381170.1| - 0.16 11.9 5.0 3.1 7.7 5.0 2.1 1 1 0 1 1 1 0 Vms1-associating treble clef domain NDK PF00334.19 gi|383320330|ref|YP_005381171.1| - 2.2e-57 192.9 0.0 2.4e-57 192.7 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU_D4 PF14578.6 gi|383320331|ref|YP_005381172.1| - 1.2e-34 118.0 0.8 5.3e-34 116.0 0.8 2.2 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|383320331|ref|YP_005381172.1| - 1.8e-31 109.2 0.0 4.5e-31 107.9 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|383320331|ref|YP_005381172.1| - 2.5e-22 79.0 4.3 4.1e-22 78.3 2.2 2.3 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|383320331|ref|YP_005381172.1| - 5.5e-12 45.9 6.2 3.2e-11 43.5 0.1 3.2 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|383320331|ref|YP_005381172.1| - 4e-07 30.1 2.7 1.4e-06 28.4 0.0 2.9 3 1 0 3 3 3 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|383320331|ref|YP_005381172.1| - 0.0093 15.8 0.0 0.023 14.5 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|383320331|ref|YP_005381172.1| - 0.017 15.3 0.0 0.05 13.8 0.0 1.9 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|383320331|ref|YP_005381172.1| - 0.034 14.2 0.0 0.34 10.9 0.0 2.3 1 1 0 2 2 2 0 Dynamin family RsgA_GTPase PF03193.16 gi|383320331|ref|YP_005381172.1| - 0.27 11.1 1.1 2.3 8.1 0.1 2.9 2 1 1 3 3 3 0 RsgA GTPase Fer4_13 PF13370.6 gi|383320332|ref|YP_005381173.1| - 3.2e-15 56.4 6.3 3.8e-15 56.2 6.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|383320332|ref|YP_005381173.1| - 1.1e-11 45.3 10.3 9.3e-11 42.3 10.3 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|383320332|ref|YP_005381173.1| - 3.2e-08 33.0 12.6 2.1e-06 27.3 5.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383320332|ref|YP_005381173.1| - 8.1e-06 25.7 2.1 8.1e-06 25.7 2.1 2.4 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|383320332|ref|YP_005381173.1| - 1.6e-05 24.9 9.3 2.2e-05 24.5 9.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383320332|ref|YP_005381173.1| - 3.8e-05 24.2 21.3 0.004 17.7 11.6 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383320332|ref|YP_005381173.1| - 5.4e-05 23.0 3.2 5.4e-05 23.0 3.2 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_19 PF06902.11 gi|383320332|ref|YP_005381173.1| - 0.001 19.1 4.0 0.0012 18.8 4.0 1.1 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_4 PF12800.7 gi|383320332|ref|YP_005381173.1| - 0.0018 18.6 1.0 0.0018 18.6 1.0 2.6 2 1 0 2 2 1 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383320332|ref|YP_005381173.1| - 0.0034 17.5 11.0 0.015 15.4 11.0 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383320332|ref|YP_005381173.1| - 0.0051 16.9 2.0 0.0051 16.9 2.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383320332|ref|YP_005381173.1| - 0.0071 17.3 10.2 0.15 13.0 3.4 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|383320332|ref|YP_005381173.1| - 0.037 14.6 1.4 0.037 14.6 1.4 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|383320332|ref|YP_005381173.1| - 0.063 13.5 1.2 0.063 13.5 1.2 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|383320332|ref|YP_005381173.1| - 0.13 13.3 3.2 0.13 13.3 3.2 2.9 2 1 0 2 2 2 0 4Fe-4S binding domain FTR_C PF02741.15 gi|383320333|ref|YP_005381174.1| - 8.2e-68 227.1 1.3 8.2e-68 227.1 1.3 1.6 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.18 gi|383320333|ref|YP_005381174.1| - 2.2e-60 202.7 0.0 4.2e-60 201.8 0.0 1.5 2 0 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase HATPase_c PF02518.26 gi|383320336|ref|YP_005381177.1| - 1.4e-13 51.4 0.0 3.1e-13 50.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|383320336|ref|YP_005381177.1| - 1.2e-09 38.6 0.0 2.5e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|383320336|ref|YP_005381177.1| - 5.9e-07 29.9 0.4 1.2e-06 28.9 0.0 1.6 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.6 gi|383320336|ref|YP_005381177.1| - 8.3e-07 29.0 0.0 1.6e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.26 gi|383320336|ref|YP_005381177.1| - 2e-06 28.5 0.0 3.5e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.6 gi|383320336|ref|YP_005381177.1| - 0.0033 17.3 0.0 0.0068 16.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|383320336|ref|YP_005381177.1| - 0.0035 17.2 0.0 0.0074 16.2 0.0 1.5 1 0 0 1 1 1 1 GHKL domain SIMPL PF04402.14 gi|383320336|ref|YP_005381177.1| - 0.42 11.0 9.7 1.9 8.9 9.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF541) TRM PF02005.16 gi|383320338|ref|YP_005381179.1| - 2.1e-101 339.9 0.0 2.4e-101 339.6 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|383320338|ref|YP_005381179.1| - 0.0037 16.8 0.0 0.0058 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Zn-ribbon_8 PF09723.10 gi|383320338|ref|YP_005381179.1| - 0.013 15.6 0.4 0.036 14.2 0.4 1.8 1 0 0 1 1 1 0 Zinc ribbon domain DUF4784 PF16023.5 gi|383320338|ref|YP_005381179.1| - 0.16 10.9 0.0 0.7 8.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4784) zf-ribbon_3 PF13248.6 gi|383320338|ref|YP_005381179.1| - 6.7 6.3 7.9 4.3 6.9 0.1 3.7 4 0 0 4 4 4 0 zinc-ribbon domain DUF872 PF05915.12 gi|383320339|ref|YP_005381180.1| - 5.8 7.1 8.2 2.5 8.3 0.1 2.6 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) AAA_5 PF07728.14 gi|383320340|ref|YP_005381181.1| - 2e-22 79.7 0.0 6.7e-22 78.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|383320340|ref|YP_005381181.1| - 2.4e-07 30.7 0.0 1.5e-06 28.1 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|383320340|ref|YP_005381181.1| - 1.7e-05 25.3 0.0 5.8e-05 23.5 0.0 2.1 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|383320340|ref|YP_005381181.1| - 8.9e-05 22.0 0.0 0.0027 17.1 0.0 2.4 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|383320340|ref|YP_005381181.1| - 0.00077 19.8 0.0 0.0052 17.2 0.0 2.5 2 1 0 2 2 2 1 RNA helicase AAA_18 PF13238.6 gi|383320340|ref|YP_005381181.1| - 0.001 19.6 0.0 0.0021 18.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain CbbQ_C PF08406.10 gi|383320340|ref|YP_005381181.1| - 0.0015 18.8 0.1 0.0028 17.9 0.1 1.5 1 0 0 1 1 1 1 CbbQ/NirQ/NorQ C-terminal AAA_16 PF13191.6 gi|383320340|ref|YP_005381181.1| - 0.0018 18.7 0.0 0.0076 16.6 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|383320340|ref|YP_005381181.1| - 0.0032 17.7 0.0 0.081 13.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|383320340|ref|YP_005381181.1| - 0.0059 16.9 0.0 0.13 12.5 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|383320340|ref|YP_005381181.1| - 0.01 15.3 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|383320340|ref|YP_005381181.1| - 0.011 15.9 0.0 0.02 15.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|383320340|ref|YP_005381181.1| - 0.013 15.3 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|383320340|ref|YP_005381181.1| - 0.018 14.7 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|383320340|ref|YP_005381181.1| - 0.03 14.1 0.0 0.15 11.8 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|383320340|ref|YP_005381181.1| - 0.031 14.4 0.0 0.62 10.2 0.0 2.8 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) Zeta_toxin PF06414.12 gi|383320340|ref|YP_005381181.1| - 0.032 13.5 0.0 0.067 12.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|383320340|ref|YP_005381181.1| - 0.047 13.9 0.0 0.24 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|383320340|ref|YP_005381181.1| - 0.14 11.4 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|383320340|ref|YP_005381181.1| - 0.14 11.9 0.0 0.34 10.6 0.0 1.7 2 0 0 2 2 1 0 IstB-like ATP binding protein AAA_17 PF13207.6 gi|383320340|ref|YP_005381181.1| - 0.14 12.5 0.1 0.32 11.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|383320340|ref|YP_005381181.1| - 0.18 11.7 0.0 0.37 10.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain VWA_2 PF13519.6 gi|383320341|ref|YP_005381182.1| - 4.3e-05 24.1 0.0 8.8e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|383320341|ref|YP_005381182.1| - 0.0048 16.3 0.2 0.21 10.9 0.1 2.1 2 0 0 2 2 2 2 VWA domain containing CoxE-like protein VWA PF00092.28 gi|383320341|ref|YP_005381182.1| - 0.0077 16.5 0.0 0.018 15.3 0.0 1.6 1 1 0 1 1 1 1 von Willebrand factor type A domain PmbA_TldD PF01523.16 gi|383320342|ref|YP_005381183.1| - 1.4e-56 192.4 0.0 2.2e-56 191.7 0.0 1.3 2 0 0 2 2 2 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|383320343|ref|YP_005381184.1| - 2e-51 175.5 0.4 2.6e-51 175.1 0.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Ig_mannosidase PF17753.1 gi|383320344|ref|YP_005381185.1| - 0.16 11.7 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 Ig-fold domain Arch_flagellin PF01917.16 gi|383320345|ref|YP_005381186.1| - 1.2e-40 139.4 7.8 1.3e-40 139.2 7.8 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_fla_DE PF04659.13 gi|383320346|ref|YP_005381187.1| - 0.00067 19.5 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein Pacs-1 PF10254.9 gi|383320346|ref|YP_005381187.1| - 0.051 12.5 0.2 0.06 12.3 0.2 1.1 1 0 0 1 1 1 0 PACS-1 cytosolic sorting protein Arch_flagellin PF01917.16 gi|383320347|ref|YP_005381188.1| - 2.5e-11 44.1 0.3 3.1e-11 43.7 0.3 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|383320348|ref|YP_005381189.1| - 2.1e-10 41.0 0.5 2.5e-10 40.8 0.5 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin RNase_II_C_S1 PF18614.1 gi|383320348|ref|YP_005381189.1| - 0.11 12.5 0.2 0.19 11.7 0.2 1.3 1 0 0 1 1 1 0 RNase II-type exonuclease C-terminal S1 domain ATPase PF06745.13 gi|383320349|ref|YP_005381190.1| - 3.4e-26 92.0 0.4 4e-26 91.8 0.4 1.1 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|383320349|ref|YP_005381190.1| - 8e-07 28.5 0.6 0.00018 20.8 0.1 2.1 2 0 0 2 2 2 2 PAXNEB protein AAA_25 PF13481.6 gi|383320349|ref|YP_005381190.1| - 9.6e-06 25.3 0.0 5.8e-05 22.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain DUF835 PF05763.12 gi|383320349|ref|YP_005381190.1| - 0.00037 20.3 0.2 0.00065 19.4 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Rad51 PF08423.11 gi|383320349|ref|YP_005381190.1| - 0.004 16.4 1.3 0.007 15.7 0.0 1.9 3 0 0 3 3 3 1 Rad51 AAA_22 PF13401.6 gi|383320349|ref|YP_005381190.1| - 0.043 14.1 0.2 0.36 11.1 0.2 2.1 1 1 0 1 1 1 0 AAA domain ELP6 PF09807.9 gi|383320349|ref|YP_005381190.1| - 0.14 11.6 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Elongation complex protein 6 SMC_N PF02463.19 gi|383320349|ref|YP_005381190.1| - 0.21 11.0 0.0 0.4 10.1 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 gi|383320350|ref|YP_005381191.1| - 1.1e-49 168.9 0.0 1.9e-49 168.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|383320350|ref|YP_005381191.1| - 0.011 15.5 0.1 0.025 14.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|383320350|ref|YP_005381191.1| - 0.014 15.8 0.0 0.029 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|383320350|ref|YP_005381191.1| - 0.015 15.8 0.0 0.042 14.4 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 gi|383320350|ref|YP_005381191.1| - 0.04 13.2 0.0 0.084 12.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DEAD PF00270.29 gi|383320350|ref|YP_005381191.1| - 0.048 13.4 0.0 0.91 9.3 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_7 PF12775.7 gi|383320350|ref|YP_005381191.1| - 0.11 12.0 0.1 0.28 10.7 0.1 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 gi|383320350|ref|YP_005381191.1| - 0.16 11.3 0.1 0.61 9.4 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family T2SSF PF00482.23 gi|383320351|ref|YP_005381192.1| - 9e-08 32.1 0.1 0.00015 21.7 0.0 3.5 4 1 0 4 4 4 2 Type II secretion system (T2SS), protein F DUF5546 PF17700.1 gi|383320352|ref|YP_005381193.1| - 0.35 11.2 3.7 11 6.4 0.2 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5546) DUF3209 PF11483.8 gi|383320353|ref|YP_005381194.1| - 0.0024 18.3 0.8 3 8.3 0.1 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF3209) DUF1463 PF07316.11 gi|383320353|ref|YP_005381194.1| - 0.094 12.6 0.2 0.62 9.9 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1463) SH3BGR PF04908.15 gi|383320353|ref|YP_005381194.1| - 0.11 12.6 4.0 0.44 10.7 0.4 3.0 2 1 0 2 2 2 0 SH3-binding, glutamic acid-rich protein Peptidase_M50B PF13398.6 gi|383320355|ref|YP_005381196.1| - 5.3e-08 32.7 7.7 7.8e-08 32.2 7.7 1.3 1 0 0 1 1 1 1 Peptidase M50B-like DUF3267 PF11667.8 gi|383320355|ref|YP_005381196.1| - 0.13 12.6 7.6 0.097 13.0 6.2 1.6 1 1 0 1 1 1 0 Putative zincin peptidase Peptidase_M50 PF02163.22 gi|383320355|ref|YP_005381196.1| - 0.53 9.5 5.6 0.09 12.0 1.1 1.9 1 1 1 2 2 2 0 Peptidase family M50 PAS_3 PF08447.12 gi|383320356|ref|YP_005381197.1| - 4.6e-34 116.6 1.7 1.2e-12 48.0 0.1 4.5 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|383320356|ref|YP_005381197.1| - 3.4e-33 114.0 8.1 2.7e-10 40.4 0.1 4.5 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 gi|383320356|ref|YP_005381197.1| - 6e-32 110.0 2.7 1.4e-09 38.0 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.10 gi|383320356|ref|YP_005381197.1| - 3.2e-23 82.1 0.0 2e-07 31.3 0.0 4.7 5 0 0 5 5 5 4 PAS fold PAS_8 PF13188.7 gi|383320356|ref|YP_005381197.1| - 2.4e-21 75.3 0.1 8.6e-08 32.0 0.0 4.7 4 0 0 4 4 4 3 PAS domain GAF_2 PF13185.6 gi|383320356|ref|YP_005381197.1| - 2.9e-17 63.2 0.0 5.5e-17 62.4 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|383320356|ref|YP_005381197.1| - 2.1e-12 47.8 0.0 4.2e-12 46.8 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|383320356|ref|YP_005381197.1| - 1.3e-07 32.0 0.0 2.9e-07 30.9 0.0 1.7 1 0 0 1 1 1 1 GAF domain DUF3369 PF11849.8 gi|383320356|ref|YP_005381197.1| - 2.5e-05 24.6 0.1 0.0028 17.9 0.0 3.9 4 1 0 4 4 4 1 Domain of unknown function (DUF3369) PAS_11 PF14598.6 gi|383320356|ref|YP_005381197.1| - 0.0016 18.6 1.0 0.24 11.5 0.0 3.4 3 1 0 3 3 3 1 PAS domain PAS_7 PF12860.7 gi|383320356|ref|YP_005381197.1| - 0.002 18.3 2.8 0.32 11.2 0.1 4.2 5 0 0 5 5 4 1 PAS fold TBPIP PF07106.13 gi|383320356|ref|YP_005381197.1| - 0.0072 16.2 0.1 0.019 14.9 0.1 1.8 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain HTH_24 PF13412.6 gi|383320356|ref|YP_005381197.1| - 0.019 14.5 0.2 0.079 12.5 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|383320356|ref|YP_005381197.1| - 0.055 13.5 0.0 0.2 11.7 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix Pyr_redox_2 PF07992.14 gi|383320357|ref|YP_005381198.1| - 1.8e-12 47.1 4.0 2.8e-05 23.5 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|383320357|ref|YP_005381198.1| - 2.2e-09 37.4 2.4 4.2e-05 23.3 0.7 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|383320357|ref|YP_005381198.1| - 2.3e-09 36.5 0.5 3.1e-05 22.9 0.5 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|383320357|ref|YP_005381198.1| - 3.5e-09 36.2 1.1 0.018 14.1 1.1 3.1 3 0 0 3 3 3 3 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|383320357|ref|YP_005381198.1| - 1.8e-06 28.1 0.2 6.1e-06 26.4 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|383320357|ref|YP_005381198.1| - 2e-06 27.3 0.1 1e-05 25.0 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|383320357|ref|YP_005381198.1| - 2.4e-06 26.9 3.4 0.00064 18.9 1.1 2.5 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_3 PF13738.6 gi|383320357|ref|YP_005381198.1| - 3.1e-06 26.7 0.3 5.5e-05 22.6 0.8 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|383320357|ref|YP_005381198.1| - 2.8e-05 24.6 0.8 0.36 11.4 0.1 2.9 3 1 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|383320357|ref|YP_005381198.1| - 0.00018 20.7 0.4 0.022 13.8 0.3 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.17 gi|383320357|ref|YP_005381198.1| - 0.00068 19.0 2.7 0.0015 17.9 0.2 2.5 3 0 0 3 3 3 1 Thi4 family NAD_binding_9 PF13454.6 gi|383320357|ref|YP_005381198.1| - 0.00087 19.3 0.1 0.1 12.6 0.1 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|383320357|ref|YP_005381198.1| - 0.027 13.8 0.3 3.1 7.0 0.0 2.6 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 gi|383320357|ref|YP_005381198.1| - 0.099 12.0 2.0 0.3 10.4 2.0 1.8 1 1 0 1 1 1 0 FAD dependent oxidoreductase Translin PF01997.16 gi|383320358|ref|YP_005381199.1| - 1.1e-05 25.6 0.0 0.00033 20.7 0.0 2.1 1 1 1 2 2 2 2 Translin family MFS_1 PF07690.16 gi|383320359|ref|YP_005381200.1| - 6.8e-39 133.8 47.2 5.2e-21 74.9 20.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|383320359|ref|YP_005381200.1| - 5.6e-11 41.9 24.1 1.3e-06 27.6 14.2 2.0 1 1 1 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|383320359|ref|YP_005381200.1| - 8.9e-10 37.6 14.2 3.8e-07 28.9 4.3 2.2 1 1 1 2 2 2 2 Transmembrane secretion effector Nuc_H_symport PF03825.16 gi|383320359|ref|YP_005381200.1| - 0.081 11.9 25.4 0.046 12.7 13.7 2.6 1 1 1 2 2 2 0 Nucleoside H+ symporter tRNA-synt_1g PF09334.11 gi|383320360|ref|YP_005381201.1| - 9.7e-148 492.1 0.0 1.2e-147 491.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|383320360|ref|YP_005381201.1| - 9.5e-27 93.0 0.6 3e-26 91.4 0.2 2.0 2 0 0 2 2 2 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|383320360|ref|YP_005381201.1| - 1e-20 73.6 0.1 1.8e-10 39.7 0.1 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|383320360|ref|YP_005381201.1| - 8.6e-14 51.6 0.0 1.7e-08 34.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|383320360|ref|YP_005381201.1| - 1.8e-12 47.5 0.2 4.2e-12 46.3 0.1 1.7 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|383320360|ref|YP_005381201.1| - 0.0022 17.0 0.0 0.76 8.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|383320360|ref|YP_005381201.1| - 0.18 10.7 0.0 0.37 9.7 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (R) DZR PF12773.7 gi|383320360|ref|YP_005381201.1| - 1.2 9.2 6.0 4.6 7.3 6.0 2.0 1 1 0 1 1 1 0 Double zinc ribbon EF-1_beta_acid PF10587.9 gi|383320360|ref|YP_005381201.1| - 2.7 8.5 4.8 5.7 7.5 4.8 1.5 1 0 0 1 1 1 0 Eukaryotic elongation factor 1 beta central acidic region CarboxypepD_reg PF13620.6 gi|383320361|ref|YP_005381202.1| - 3e-10 40.2 4.3 3.3e-09 36.9 2.6 2.9 3 1 0 3 3 3 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|383320361|ref|YP_005381202.1| - 7.2e-07 29.1 3.7 0.045 13.8 0.0 3.3 4 1 0 4 4 4 2 Bacterial Ig-like domain (group 1) SdrD_B PF17210.3 gi|383320361|ref|YP_005381202.1| - 0.00084 19.6 1.0 0.0026 18.0 0.4 2.0 2 0 0 2 2 2 1 SdrD B-like domain Dioxygenase_C PF00775.21 gi|383320361|ref|YP_005381202.1| - 0.0074 15.7 0.2 0.096 12.1 0.1 2.0 2 0 0 2 2 2 1 Dioxygenase CarbopepD_reg_2 PF13715.6 gi|383320361|ref|YP_005381202.1| - 0.28 11.2 0.9 11 6.1 0.1 2.7 3 0 0 3 3 3 0 CarboxypepD_reg-like domain Desulfoferrodox PF01880.18 gi|383320362|ref|YP_005381203.1| - 6.5e-29 100.4 0.0 7.9e-29 100.1 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 gi|383320362|ref|YP_005381203.1| - 0.00029 21.0 0.0 0.00044 20.4 0.0 1.3 1 1 0 1 1 1 1 Sulfur oxidation protein SoxY eIF-5a PF01287.20 gi|383320363|ref|YP_005381204.1| - 5.4e-11 42.4 0.5 1.1e-10 41.4 0.5 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|383320363|ref|YP_005381204.1| - 8.2e-07 29.0 0.1 1.4e-06 28.3 0.1 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain Arginase PF00491.21 gi|383320364|ref|YP_005381205.1| - 1.9e-76 257.3 0.2 2.1e-76 257.1 0.2 1.0 1 0 0 1 1 1 1 Arginase family Ribosomal_S13_N PF08069.12 gi|383320365|ref|YP_005381206.1| - 1.1e-25 89.5 0.2 1.8e-25 88.7 0.2 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|383320365|ref|YP_005381206.1| - 5.9e-16 58.5 0.1 8.7e-16 57.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 Helicase_C_3 PF13625.6 gi|383320365|ref|YP_005381206.1| - 0.031 14.4 0.1 0.094 12.9 0.0 1.7 2 0 0 2 2 2 0 Helicase conserved C-terminal domain DHHA1 PF02272.19 gi|383320366|ref|YP_005381207.1| - 5.1e-15 56.1 0.1 5.1e-15 56.1 0.1 2.3 2 0 0 2 2 2 1 DHHA1 domain BTHB PF18410.1 gi|383320366|ref|YP_005381207.1| - 0.055 13.3 0.7 3.6 7.5 0.0 2.3 2 0 0 2 2 2 0 Basic tilted helix bundle domain PAS_3 PF08447.12 gi|383320368|ref|YP_005381209.1| - 8.2e-32 109.4 0.0 7.7e-18 64.6 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|383320368|ref|YP_005381209.1| - 2.7e-15 56.8 0.0 5.1e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|383320368|ref|YP_005381209.1| - 6.3e-14 51.9 0.0 5.7e-09 36.0 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|383320368|ref|YP_005381209.1| - 6.5e-10 39.2 0.0 5.8e-07 29.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|383320368|ref|YP_005381209.1| - 2.8e-08 34.0 0.0 9.5e-06 25.8 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|383320368|ref|YP_005381209.1| - 9.6e-06 25.5 0.0 6.1e-05 22.9 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|383320368|ref|YP_005381209.1| - 0.00055 19.9 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain RnlB_antitoxin PF15933.5 gi|383320368|ref|YP_005381209.1| - 0.075 13.4 0.2 0.2 12.0 0.2 1.7 1 0 0 1 1 1 0 Antitoxin to bacterial toxin RNase LS or RnlA DUF4366 PF14283.6 gi|383320369|ref|YP_005381210.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) TALPID3 PF15324.6 gi|383320369|ref|YP_005381210.1| - 4.3 4.9 8.2 5.6 4.5 8.2 1.1 1 0 0 1 1 1 0 Hedgehog signalling target MoCF_biosynth PF00994.24 gi|383320370|ref|YP_005381211.1| - 7e-36 123.0 0.1 9.5e-36 122.6 0.1 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain tify PF06200.14 gi|383320370|ref|YP_005381211.1| - 0.049 13.0 0.1 0.1 11.9 0.1 1.6 1 0 0 1 1 1 0 tify domain Peptidase_M29 PF02073.15 gi|383320371|ref|YP_005381212.1| - 4.1e-15 55.5 0.0 9.2e-10 37.8 0.0 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Med20 PF08612.11 gi|383320371|ref|YP_005381212.1| - 0.16 11.4 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 TATA-binding related factor (TRF) of subunit 20 of Mediator complex tRNA-synt_2c PF01411.19 gi|383320372|ref|YP_005381213.1| - 2.5e-10 39.5 0.1 3.2e-10 39.1 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|383320372|ref|YP_005381213.1| - 1e-07 31.9 0.2 2.3e-07 30.8 0.2 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain HTH_45 PF14947.6 gi|383320373|ref|YP_005381214.1| - 2.4e-08 33.8 0.5 3.5e-08 33.3 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|383320373|ref|YP_005381214.1| - 0.0012 18.6 0.0 0.003 17.4 0.0 1.7 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|383320373|ref|YP_005381214.1| - 0.056 13.4 0.0 0.64 10.0 0.0 2.3 1 1 0 1 1 1 0 MarR family PGF-CTERM PF18204.1 gi|383320374|ref|YP_005381215.1| - 0.012 15.6 1.5 0.022 14.7 1.5 1.5 1 0 0 1 1 1 0 PGF-CTERM motif Trypan_PARP PF05887.11 gi|383320374|ref|YP_005381215.1| - 0.088 12.8 16.5 0.032 14.2 13.3 1.9 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) ORC6 PF05460.13 gi|383320374|ref|YP_005381215.1| - 8.9 5.5 8.7 14 4.8 8.7 1.3 1 0 0 1 1 1 0 Origin recognition complex subunit 6 (ORC6) SAM_adeno_trans PF01887.16 gi|383320375|ref|YP_005381216.1| - 1.3e-73 247.3 0.0 1.5e-73 247.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase RibD_C PF01872.17 gi|383320376|ref|YP_005381217.1| - 9.5e-44 149.6 0.2 1.1e-43 149.5 0.2 1.0 1 0 0 1 1 1 1 RibD C-terminal domain PALP PF00291.25 gi|383320376|ref|YP_005381217.1| - 0.0045 16.4 0.0 0.0063 16.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Response_reg PF00072.24 gi|383320377|ref|YP_005381218.1| - 1.5e-17 63.7 0.2 1.7e-17 63.6 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain fragilysinNterm PF16376.5 gi|383320377|ref|YP_005381218.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain of fragilysin AIRS_C PF02769.22 gi|383320378|ref|YP_005381219.1| - 2e-16 60.5 0.7 4.1e-16 59.5 0.7 1.6 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|383320378|ref|YP_005381219.1| - 4.1e-08 33.8 1.9 1e-07 32.5 1.9 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Thioredoxin_2 PF13098.6 gi|383320379|ref|YP_005381220.1| - 5.9e-14 52.5 0.0 1e-13 51.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain TPR_16 PF13432.6 gi|383320379|ref|YP_005381220.1| - 2e-09 38.0 2.1 2.6e-09 37.6 2.1 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|383320379|ref|YP_005381220.1| - 6.8e-08 32.7 1.1 0.0013 19.2 0.0 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat Thioredoxin_7 PF13899.6 gi|383320379|ref|YP_005381220.1| - 1.1e-07 31.9 0.0 1.9e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like YfiO PF13525.6 gi|383320379|ref|YP_005381220.1| - 3.4e-05 23.7 0.1 0.00013 21.8 0.1 1.8 1 1 0 1 1 1 1 Outer membrane lipoprotein Thioredoxin_8 PF13905.6 gi|383320379|ref|YP_005381220.1| - 0.00017 21.8 0.0 0.31 11.4 0.0 2.3 1 1 0 2 2 2 2 Thioredoxin-like TPR_2 PF07719.17 gi|383320379|ref|YP_005381220.1| - 0.00019 21.3 0.2 0.0015 18.5 0.0 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat Redoxin PF08534.10 gi|383320379|ref|YP_005381220.1| - 0.00044 20.0 0.0 0.0057 16.4 0.0 2.1 1 1 0 1 1 1 1 Redoxin Thioredoxin PF00085.20 gi|383320379|ref|YP_005381220.1| - 0.00052 20.0 0.0 0.00085 19.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|383320379|ref|YP_005381220.1| - 0.0018 18.3 0.0 0.0038 17.2 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|383320379|ref|YP_005381220.1| - 0.025 14.4 0.1 0.23 11.3 0.1 2.1 1 1 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|383320379|ref|YP_005381220.1| - 0.032 14.0 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_4 PF13462.6 gi|383320379|ref|YP_005381220.1| - 0.037 14.2 0.0 4.1 7.5 0.0 2.4 1 1 1 2 2 2 0 Thioredoxin AhpC-TSA PF00578.21 gi|383320379|ref|YP_005381220.1| - 0.071 13.0 0.0 2.6 8.0 0.0 2.2 1 1 0 1 1 1 0 AhpC/TSA family TPR_14 PF13428.6 gi|383320379|ref|YP_005381220.1| - 0.25 12.3 1.1 0.63 11.0 0.2 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat Methyltransf_11 PF08241.12 gi|383320380|ref|YP_005381221.1| - 2e-24 86.1 0.0 3.7e-24 85.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383320380|ref|YP_005381221.1| - 7.5e-22 77.9 0.0 1.3e-21 77.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383320380|ref|YP_005381221.1| - 8.3e-21 74.5 0.0 1.7e-20 73.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383320380|ref|YP_005381221.1| - 2e-14 53.7 0.0 3.4e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|383320380|ref|YP_005381221.1| - 5.2e-12 45.6 0.0 7.5e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|383320380|ref|YP_005381221.1| - 1.1e-11 45.4 0.0 2e-11 44.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|383320380|ref|YP_005381221.1| - 4.9e-07 29.3 0.0 9.6e-07 28.4 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|383320380|ref|YP_005381221.1| - 1.3e-05 25.0 0.0 1.9e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_29 PF03141.16 gi|383320380|ref|YP_005381221.1| - 4e-05 22.4 0.0 6e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.12 gi|383320380|ref|YP_005381221.1| - 0.00016 21.3 0.0 0.00035 20.2 0.0 1.5 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW TPMT PF05724.11 gi|383320380|ref|YP_005381221.1| - 0.00042 20.1 0.0 0.00065 19.4 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.14 gi|383320380|ref|YP_005381221.1| - 0.0087 15.6 0.0 0.043 13.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|383320380|ref|YP_005381221.1| - 0.012 15.1 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_8 PF05148.15 gi|383320380|ref|YP_005381221.1| - 0.029 14.2 0.0 0.068 13.0 0.0 1.6 1 0 0 1 1 1 0 Hypothetical methyltransferase N6_N4_Mtase PF01555.18 gi|383320380|ref|YP_005381221.1| - 0.036 13.8 0.0 4.3 7.0 0.0 2.2 2 0 0 2 2 2 0 DNA methylase Methyltransf_4 PF02390.17 gi|383320380|ref|YP_005381221.1| - 0.061 12.8 0.0 8.4 5.8 0.0 2.2 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_9 PF08003.11 gi|383320380|ref|YP_005381221.1| - 0.079 11.9 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.6 gi|383320380|ref|YP_005381221.1| - 0.089 12.8 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Peptidase_M29 PF02073.15 gi|383320381|ref|YP_005381222.1| - 7.6e-16 57.9 0.0 1.6e-15 56.8 0.0 1.5 2 0 0 2 2 2 1 Thermophilic metalloprotease (M29) DUF1887 PF09002.11 gi|383320381|ref|YP_005381222.1| - 0.21 10.2 0.0 4.1 6.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1887) Peptidase_M3 PF01432.20 gi|383320382|ref|YP_005381223.1| - 1.9e-05 24.2 1.3 0.0041 16.5 1.3 2.7 1 1 0 1 1 1 1 Peptidase family M3 Polbeta PF18765.1 gi|383320383|ref|YP_005381224.1| - 2.8e-24 85.0 0.3 3.7e-24 84.6 0.3 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|383320383|ref|YP_005381224.1| - 8e-13 48.5 0.2 1.1e-12 48.1 0.2 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 gi|383320383|ref|YP_005381224.1| - 0.015 15.2 0.0 0.017 15.0 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain UPF0137 PF03677.13 gi|383320383|ref|YP_005381224.1| - 0.076 12.8 0.1 0.084 12.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0137) NHase_beta PF02211.15 gi|383320383|ref|YP_005381224.1| - 0.12 12.4 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Nitrile hydratase beta subunit SseB_C PF14581.6 gi|383320383|ref|YP_005381224.1| - 0.12 12.4 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 SseB protein C-terminal domain DUF86 PF01934.17 gi|383320384|ref|YP_005381225.1| - 1.4e-29 102.4 0.5 1.7e-29 102.1 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTase_sub_bind PF08780.11 gi|383320384|ref|YP_005381225.1| - 3.9e-05 23.6 0.2 4.5e-05 23.4 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase substrate binding protein like Metallophos_2 PF12850.7 gi|383320385|ref|YP_005381226.1| - 6.3e-30 104.5 0.0 7.6e-30 104.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|383320385|ref|YP_005381226.1| - 5.1e-08 33.7 0.8 2.5e-07 31.4 0.7 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|383320386|ref|YP_005381227.1| - 2.4e-27 96.1 0.0 3.6e-27 95.6 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|383320386|ref|YP_005381227.1| - 2.5e-15 57.6 0.5 6.4e-15 56.2 0.5 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.11 gi|383320386|ref|YP_005381227.1| - 0.0028 16.0 0.4 0.97 7.6 0.2 2.1 1 1 1 2 2 2 2 Firmicute fructose-1,6-bisphosphatase PhoU PF01895.19 gi|383320387|ref|YP_005381228.1| - 4e-38 129.8 0.8 1.8e-18 66.7 0.1 2.1 2 0 0 2 2 2 2 PhoU domain ABC_tran PF00005.27 gi|383320388|ref|YP_005381229.1| - 3.4e-32 111.8 0.0 5.1e-32 111.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320388|ref|YP_005381229.1| - 2.3e-12 47.4 0.0 6.8e-05 22.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383320388|ref|YP_005381229.1| - 3.5e-08 33.2 0.1 0.00092 18.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|383320388|ref|YP_005381229.1| - 7.4e-05 23.2 0.0 0.00025 21.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|383320388|ref|YP_005381229.1| - 0.00017 21.8 0.1 0.00052 20.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|383320388|ref|YP_005381229.1| - 0.00022 21.1 0.0 0.00036 20.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|383320388|ref|YP_005381229.1| - 0.00038 20.4 0.0 0.0014 18.6 0.0 1.9 3 0 0 3 3 3 1 RsgA GTPase AAA_29 PF13555.6 gi|383320388|ref|YP_005381229.1| - 0.0006 19.5 0.0 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|383320388|ref|YP_005381229.1| - 0.0015 19.1 0.1 0.0034 17.9 0.1 1.5 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|383320388|ref|YP_005381229.1| - 0.0019 18.1 0.1 0.0033 17.4 0.1 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain ATPase_2 PF01637.18 gi|383320388|ref|YP_005381229.1| - 0.0038 17.2 0.0 0.42 10.5 0.0 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|383320388|ref|YP_005381229.1| - 0.0092 16.5 0.1 0.042 14.4 0.0 2.1 3 0 0 3 3 2 1 AAA domain AAA_30 PF13604.6 gi|383320388|ref|YP_005381229.1| - 0.014 15.2 0.1 0.45 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|383320388|ref|YP_005381229.1| - 0.018 13.9 0.0 0.22 10.3 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein PRK PF00485.18 gi|383320388|ref|YP_005381229.1| - 0.024 14.4 0.0 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 gi|383320388|ref|YP_005381229.1| - 0.03 13.9 0.2 0.21 11.1 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|383320388|ref|YP_005381229.1| - 0.057 13.1 0.2 0.18 11.5 0.0 1.9 3 0 0 3 3 3 0 AAA domain ABC_ATPase PF09818.9 gi|383320388|ref|YP_005381229.1| - 0.06 12.1 0.0 3.4 6.4 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Gemin6 PF06372.12 gi|383320388|ref|YP_005381229.1| - 0.079 12.5 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Gemin6 protein RNA_helicase PF00910.22 gi|383320388|ref|YP_005381229.1| - 0.09 13.2 0.1 0.63 10.5 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_33 PF13671.6 gi|383320388|ref|YP_005381229.1| - 0.095 12.9 0.1 0.25 11.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|383320388|ref|YP_005381229.1| - 0.13 12.5 0.1 0.53 10.5 0.0 2.1 3 0 0 3 3 3 0 AAA domain IstB_IS21 PF01695.17 gi|383320388|ref|YP_005381229.1| - 0.13 12.0 0.0 5.2 6.8 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein BPD_transp_1 PF00528.22 gi|383320389|ref|YP_005381230.1| - 1.3e-27 96.8 17.1 1.3e-27 96.8 17.1 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF417 PF04224.12 gi|383320389|ref|YP_005381230.1| - 0.012 15.2 1.4 0.012 15.2 1.4 2.4 2 0 0 2 2 2 0 Protein of unknown function, DUF417 BPD_transp_1 PF00528.22 gi|383320390|ref|YP_005381231.1| - 4e-22 78.8 20.4 4e-22 78.8 20.4 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|383320391|ref|YP_005381232.1| - 2e-43 149.1 5.2 3.5e-43 148.3 5.2 1.3 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|383320391|ref|YP_005381232.1| - 7.5e-24 83.9 0.3 9.8e-24 83.5 0.3 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|383320391|ref|YP_005381232.1| - 1.5e-11 44.5 0.2 1.9e-11 44.2 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.20 gi|383320391|ref|YP_005381232.1| - 0.0012 18.3 0.5 0.0016 17.9 0.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 SBP_bac_6 PF13343.6 gi|383320391|ref|YP_005381232.1| - 0.0022 17.4 0.0 0.0029 17.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|383320391|ref|YP_005381232.1| - 0.0041 17.0 0.1 0.0057 16.5 0.1 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PhoU PF01895.19 gi|383320392|ref|YP_005381233.1| - 1.3e-20 73.6 12.6 7.2e-16 58.4 4.9 2.6 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|383320392|ref|YP_005381233.1| - 1.9e-07 30.8 0.0 4.1e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin HTH_30 PF13556.6 gi|383320392|ref|YP_005381233.1| - 0.021 14.6 0.0 0.071 12.9 0.0 1.9 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain IL32 PF15225.6 gi|383320392|ref|YP_005381233.1| - 0.041 14.2 0.3 7.6 7.0 0.1 2.4 2 0 0 2 2 2 0 Interleukin 32 DUF1062 PF06353.12 gi|383320392|ref|YP_005381233.1| - 0.17 12.7 3.6 4.7 8.0 0.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1062) CsgE PF10627.9 gi|383320392|ref|YP_005381233.1| - 0.18 12.0 0.9 2.7 8.3 0.2 2.4 2 1 0 2 2 2 0 Curli assembly protein CsgE FtsJ PF01728.19 gi|383320393|ref|YP_005381234.1| - 4.5e-56 189.7 0.0 5.6e-56 189.4 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|383320393|ref|YP_005381234.1| - 5.5e-13 48.7 2.7 1.1e-12 47.7 2.7 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.6 gi|383320393|ref|YP_005381234.1| - 2.4e-05 24.2 0.0 3.8e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383320393|ref|YP_005381234.1| - 0.026 15.2 0.2 1.6 9.5 0.2 2.9 1 1 1 2 2 2 0 Methyltransferase domain SNARE_assoc PF09335.11 gi|383320394|ref|YP_005381235.1| - 1.6e-27 96.4 4.0 1.6e-27 96.4 4.0 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF4126 PF13548.6 gi|383320394|ref|YP_005381235.1| - 0.63 9.7 6.6 3.5 7.3 0.3 2.6 2 2 1 3 3 3 0 Domain of unknown function (DUF4126) MCH PF02289.16 gi|383320395|ref|YP_005381236.1| - 7.3e-103 344.1 0.0 8.2e-103 343.9 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) PHP_C PF13263.6 gi|383320397|ref|YP_005381238.1| - 4.9e-13 48.6 3.5 2.5e-12 46.3 0.3 2.8 3 0 0 3 3 3 1 PHP-associated PHP PF02811.19 gi|383320397|ref|YP_005381238.1| - 3.6e-12 46.9 0.0 4.9e-12 46.5 0.0 1.3 1 1 0 1 1 1 1 PHP domain N6_N4_Mtase PF01555.18 gi|383320401|ref|YP_005381242.1| - 1.3e-31 110.1 0.0 2.2e-31 109.4 0.0 1.4 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|383320401|ref|YP_005381242.1| - 0.024 14.3 0.1 0.76 9.4 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 DUF4566 PF15130.6 gi|383320401|ref|YP_005381242.1| - 0.16 11.3 0.0 0.3 10.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4566) AAA_31 PF13614.6 gi|383320402|ref|YP_005381243.1| - 3.4e-34 118.3 0.4 4.4e-33 114.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|383320402|ref|YP_005381243.1| - 6.3e-14 52.1 0.0 9.7e-14 51.5 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|383320402|ref|YP_005381243.1| - 7.6e-08 31.9 0.5 7.9e-07 28.5 0.0 2.5 3 1 0 3 3 3 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|383320402|ref|YP_005381243.1| - 1e-07 31.7 0.5 2e-07 30.7 0.1 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|383320402|ref|YP_005381243.1| - 1.4e-07 31.3 0.1 1.6e-05 24.5 0.0 2.6 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|383320402|ref|YP_005381243.1| - 1.3e-05 24.8 0.0 0.0014 18.2 0.0 2.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|383320402|ref|YP_005381243.1| - 0.0016 17.8 0.3 0.089 12.1 0.0 2.2 2 0 0 2 2 2 1 VirC1 protein MipZ PF09140.11 gi|383320402|ref|YP_005381243.1| - 0.015 14.6 0.1 0.059 12.7 0.0 1.8 2 0 0 2 2 2 0 ATPase MipZ MeaB PF03308.16 gi|383320402|ref|YP_005381243.1| - 0.025 13.6 0.0 0.05 12.6 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB HEPN_RiboL-PSP PF18735.1 gi|383320403|ref|YP_005381244.1| - 3.4e-11 43.4 8.8 5.3e-11 42.8 8.8 1.3 1 0 0 1 1 1 1 RiboL-PSP-HEPN HEPN_Apea PF18739.1 gi|383320403|ref|YP_005381244.1| - 0.0011 19.3 1.9 0.0019 18.6 1.9 1.6 1 1 0 1 1 1 1 Apea-like HEPN HEPN_MAE_28990 PF18737.1 gi|383320403|ref|YP_005381244.1| - 0.016 15.1 6.2 0.028 14.3 6.2 1.6 1 1 0 1 1 1 0 MAE_28990/MAE_18760-like HEPN DUF4145 PF13643.6 gi|383320403|ref|YP_005381244.1| - 0.031 14.4 2.1 0.061 13.5 0.5 2.4 2 2 0 2 2 2 0 Domain of unknown function (DUF4145) HEPN_AbiU2 PF18734.1 gi|383320403|ref|YP_005381244.1| - 0.056 13.0 6.7 0.17 11.4 6.7 2.1 1 1 0 1 1 1 0 AbiU2 Laminin_II PF06009.12 gi|383320404|ref|YP_005381245.1| - 0.035 14.1 1.6 0.071 13.1 1.6 1.5 1 0 0 1 1 1 0 Laminin Domain II Fib_alpha PF08702.10 gi|383320404|ref|YP_005381245.1| - 1.5 9.0 6.3 0.77 9.9 1.7 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Peptidase_M78 PF06114.13 gi|383320405|ref|YP_005381246.1| - 2.4e-16 59.8 0.0 4e-16 59.0 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain HTH_31 PF13560.6 gi|383320405|ref|YP_005381246.1| - 8.9e-10 38.8 0.0 5.8e-09 36.2 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|383320405|ref|YP_005381246.1| - 1.1e-09 38.1 0.0 4.5e-09 36.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_25 PF13413.6 gi|383320405|ref|YP_005381246.1| - 5.1e-05 23.1 0.0 0.00066 19.5 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|383320405|ref|YP_005381246.1| - 0.00022 21.2 0.1 0.0013 18.7 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|383320405|ref|YP_005381246.1| - 0.00049 19.8 0.8 0.0048 16.6 0.0 2.8 4 0 0 4 4 4 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|383320405|ref|YP_005381246.1| - 0.0031 17.0 0.0 0.13 11.8 0.0 3.3 4 0 0 4 4 4 1 Sigma-70, region 4 Mrr_cat PF04471.12 gi|383320406|ref|YP_005381247.1| - 0.002 18.1 0.0 0.0038 17.2 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease DUF234 PF03008.14 gi|383320406|ref|YP_005381247.1| - 0.038 14.4 1.2 0.11 12.9 1.2 1.8 1 1 0 1 1 1 0 Archaea bacterial proteins of unknown function HicB_lk_antitox PF15919.5 gi|383320407|ref|YP_005381248.1| - 6.4e-10 39.2 0.0 7.3e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF2284 PF10050.9 gi|383320407|ref|YP_005381248.1| - 0.071 12.9 0.0 0.081 12.7 0.0 1.1 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) PIG-Y PF15159.6 gi|383320408|ref|YP_005381249.1| - 0.0045 17.9 0.2 0.0045 17.9 0.2 2.9 3 1 0 3 3 3 1 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y OAD_gamma PF04277.13 gi|383320408|ref|YP_005381249.1| - 0.06 14.0 1.2 0.06 14.0 1.2 3.2 4 0 0 4 4 4 0 Oxaloacetate decarboxylase, gamma chain CrgA PF06781.12 gi|383320408|ref|YP_005381249.1| - 0.15 12.1 0.2 0.15 12.1 0.2 2.9 2 2 1 3 3 3 0 Cell division protein CrgA DUF2140 PF09911.9 gi|383320408|ref|YP_005381249.1| - 1.5 8.3 7.0 0.15 11.6 0.9 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2140) GRP PF07172.11 gi|383320408|ref|YP_005381249.1| - 2.3 9.0 6.3 1.6 9.5 0.2 2.5 2 0 0 2 2 2 0 Glycine rich protein family DUF2070 PF09843.9 gi|383320408|ref|YP_005381249.1| - 5.5 5.1 18.8 0.85 7.8 8.8 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) DUF3488 PF11992.8 gi|383320408|ref|YP_005381249.1| - 6.4 5.6 15.9 2.1 7.2 1.1 2.6 2 1 0 3 3 3 0 Domain of unknown function (DUF3488) DUF4131 PF13567.6 gi|383320408|ref|YP_005381249.1| - 7.1 6.2 13.6 3.5 7.3 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) Tic110 PF16940.5 gi|383320409|ref|YP_005381250.1| - 1.1e-13 50.5 5.8 2.6e-12 46.0 1.2 2.1 1 1 1 2 2 2 2 Chloroplast envelope transporter TerB PF05099.13 gi|383320409|ref|YP_005381250.1| - 0.00016 21.6 2.9 0.005 16.8 2.9 3.2 1 1 0 1 1 1 1 Tellurite resistance protein TerB Vps36_ESCRT-II PF11605.8 gi|383320409|ref|YP_005381250.1| - 0.0009 19.4 0.1 0.058 13.6 0.1 2.3 2 0 0 2 2 2 1 Vacuolar protein sorting protein 36 Vps36 CheF-arch PF04283.12 gi|383320409|ref|YP_005381250.1| - 0.00095 19.0 0.2 0.01 15.6 0.1 2.6 2 1 0 2 2 2 1 Chemotaxis signal transduction system protein F from archaea GRAM PF02893.20 gi|383320409|ref|YP_005381250.1| - 0.013 15.4 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 GRAM domain DUF445 PF04286.12 gi|383320409|ref|YP_005381250.1| - 0.065 13.0 1.6 0.086 12.6 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) zf-AN1 PF01428.16 gi|383320410|ref|YP_005381251.1| - 2.8e-13 49.8 5.6 5.6e-13 48.8 5.6 1.4 1 0 0 1 1 1 1 AN1-like Zinc finger Transp_Tc5_C PF04236.15 gi|383320410|ref|YP_005381251.1| - 0.2 12.0 3.5 0.58 10.5 3.5 1.9 1 0 0 1 1 1 0 Tc5 transposase C-terminal domain DUF3930 PF13067.6 gi|383320410|ref|YP_005381251.1| - 0.69 10.2 3.7 1.8 8.9 3.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3930) zf-C2H2_4 PF13894.6 gi|383320410|ref|YP_005381251.1| - 3.7 8.6 8.0 1.8 9.6 2.5 2.8 2 0 0 2 2 2 0 C2H2-type zinc finger MerR_1 PF13411.6 gi|383320412|ref|YP_005381253.1| - 0.029 14.5 0.8 0.038 14.1 0.8 1.2 1 0 0 1 1 1 0 MerR HTH family regulatory protein Virul_Fac PF10139.9 gi|383320412|ref|YP_005381253.1| - 0.036 12.3 0.5 0.041 12.1 0.5 1.0 1 0 0 1 1 1 0 Putative bacterial virulence factor MarR_2 PF12802.7 gi|383320413|ref|YP_005381254.1| - 7.2e-07 29.0 0.0 1.4e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|383320413|ref|YP_005381254.1| - 2.2e-06 27.6 0.0 6.3e-06 26.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|383320413|ref|YP_005381254.1| - 6.3e-06 25.7 0.5 1.4e-05 24.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|383320413|ref|YP_005381254.1| - 8.7e-06 26.1 0.1 1.9e-05 25.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|383320413|ref|YP_005381254.1| - 5.8e-05 22.8 0.0 0.00012 21.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|383320413|ref|YP_005381254.1| - 7.5e-05 22.3 0.0 0.00021 20.9 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|383320413|ref|YP_005381254.1| - 0.0001 22.1 0.0 0.00019 21.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.12 gi|383320413|ref|YP_005381254.1| - 0.00084 19.4 0.0 0.0014 18.8 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|383320413|ref|YP_005381254.1| - 0.001 18.9 0.2 0.0016 18.3 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|383320413|ref|YP_005381254.1| - 0.0011 19.1 0.0 0.002 18.3 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain PadR PF03551.14 gi|383320413|ref|YP_005381254.1| - 0.0032 17.4 0.1 0.015 15.2 0.0 2.2 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family LexA_DNA_bind PF01726.16 gi|383320413|ref|YP_005381254.1| - 0.0046 16.7 0.8 0.0069 16.1 0.0 1.7 2 0 0 2 2 2 1 LexA DNA binding domain Ribosomal_S25 PF03297.15 gi|383320413|ref|YP_005381254.1| - 0.0072 16.5 0.0 0.013 15.7 0.0 1.5 1 0 0 1 1 1 1 S25 ribosomal protein MarR PF01047.22 gi|383320413|ref|YP_005381254.1| - 0.012 15.6 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_micro PF17007.5 gi|383320413|ref|YP_005381254.1| - 0.015 14.1 0.1 0.021 13.6 0.1 1.2 1 0 0 1 1 1 0 HTH-like TFIIE_alpha PF02002.17 gi|383320413|ref|YP_005381254.1| - 0.07 13.0 0.1 0.16 11.8 0.1 1.6 1 0 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.20 gi|383320413|ref|YP_005381254.1| - 0.12 12.7 0.0 0.21 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator OPT PF03169.15 gi|383320414|ref|YP_005381255.1| - 7.8e-31 107.4 62.5 2.7e-30 105.6 62.5 1.7 1 1 0 1 1 1 1 OPT oligopeptide transporter protein CrgA PF06781.12 gi|383320414|ref|YP_005381255.1| - 0.053 13.6 0.7 0.053 13.6 0.7 3.6 2 1 1 3 3 3 0 Cell division protein CrgA DEAD PF00270.29 gi|383320415|ref|YP_005381256.1| - 7.1e-49 165.9 0.0 1.4e-48 165.0 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|383320415|ref|YP_005381256.1| - 4.9e-32 110.6 0.1 2.4e-30 105.1 0.0 3.0 4 0 0 4 4 4 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|383320415|ref|YP_005381256.1| - 5.9e-05 23.1 0.0 9.5e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.14 gi|383320415|ref|YP_005381256.1| - 0.056 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Helicase AAA_22 PF13401.6 gi|383320415|ref|YP_005381256.1| - 0.076 13.3 0.1 0.52 10.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain CMS1 PF14617.6 gi|383320415|ref|YP_005381256.1| - 0.12 11.6 0.1 0.28 10.5 0.1 1.5 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit DUF123 PF01986.16 gi|383320416|ref|YP_005381257.1| - 1.5e-27 96.0 0.0 2.1e-27 95.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 Peptidase_M54 PF07998.11 gi|383320417|ref|YP_005381258.1| - 2.3e-20 73.4 1.1 6.2e-20 72.0 1.1 1.8 1 1 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|383320417|ref|YP_005381258.1| - 0.0039 17.0 0.1 0.004 17.0 0.1 1.2 1 0 0 1 1 1 1 Matrixin Metallopep PF12044.8 gi|383320417|ref|YP_005381258.1| - 0.006 15.2 0.2 0.0096 14.6 0.2 1.2 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M66 PF10462.9 gi|383320417|ref|YP_005381258.1| - 0.16 10.9 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_3 PF13582.6 gi|383320417|ref|YP_005381258.1| - 0.33 11.5 1.4 0.51 10.9 1.4 1.5 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like PCMT PF01135.19 gi|383320418|ref|YP_005381259.1| - 8.1e-61 205.4 0.0 8.9e-61 205.3 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|383320418|ref|YP_005381259.1| - 1.8e-09 37.5 0.0 2.3e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383320418|ref|YP_005381259.1| - 3.5e-05 24.4 0.0 5.6e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|383320418|ref|YP_005381259.1| - 0.0012 18.8 0.0 0.0017 18.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|383320418|ref|YP_005381259.1| - 0.0022 17.7 0.0 0.0029 17.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.20 gi|383320418|ref|YP_005381259.1| - 0.013 14.9 0.0 0.016 14.5 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|383320418|ref|YP_005381259.1| - 0.016 14.7 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Ubie_methyltran PF01209.18 gi|383320418|ref|YP_005381259.1| - 0.021 14.2 0.0 0.025 13.9 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|383320418|ref|YP_005381259.1| - 0.022 15.4 0.0 0.052 14.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|383320418|ref|YP_005381259.1| - 0.039 13.9 0.0 0.056 13.4 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|383320418|ref|YP_005381259.1| - 0.088 12.4 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|383320418|ref|YP_005381259.1| - 0.09 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|383320418|ref|YP_005381259.1| - 0.1 12.5 0.0 0.22 11.4 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.17 gi|383320418|ref|YP_005381259.1| - 0.12 11.6 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase RrnaAD PF00398.20 gi|383320418|ref|YP_005381259.1| - 0.14 11.2 0.0 0.2 10.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.6 gi|383320418|ref|YP_005381259.1| - 0.15 13.1 0.0 0.28 12.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.17 gi|383320418|ref|YP_005381259.1| - 0.2 10.8 0.0 0.3 10.2 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin GidB PF02527.15 gi|383320418|ref|YP_005381259.1| - 0.22 10.8 0.0 0.26 10.6 0.0 1.1 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G DUF2387 PF09526.10 gi|383320419|ref|YP_005381260.1| - 0.0027 17.8 0.9 0.0052 16.9 0.9 1.5 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) DUF371 PF04027.13 gi|383320420|ref|YP_005381261.1| - 3.5e-47 159.7 0.1 4e-47 159.5 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF2207 PF09972.9 gi|383320421|ref|YP_005381262.1| - 0.027 13.3 0.0 0.029 13.1 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DotU PF09850.9 gi|383320421|ref|YP_005381262.1| - 0.03 14.1 0.3 0.12 12.0 0.0 1.8 2 0 0 2 2 2 0 Type VI secretion system protein DotU CD34_antigen PF06365.12 gi|383320421|ref|YP_005381262.1| - 0.04 13.5 1.6 0.075 12.6 0.0 1.9 2 0 0 2 2 2 0 CD34/Podocalyxin family M16C_assoc PF08367.11 gi|383320421|ref|YP_005381262.1| - 0.08 12.1 7.2 0.11 11.6 7.2 1.1 1 0 0 1 1 1 0 Peptidase M16C associated DNA_processg_A PF02481.15 gi|383320421|ref|YP_005381262.1| - 0.089 12.0 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 DNA recombination-mediator protein A Ribosomal_L29 PF00831.23 gi|383320421|ref|YP_005381262.1| - 1.1 9.3 11.9 1.7 8.7 2.1 2.2 1 1 1 2 2 2 0 Ribosomal L29 protein DUF3040 PF11239.8 gi|383320421|ref|YP_005381262.1| - 2.8 8.3 5.8 19 5.6 5.8 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) DUF3213 PF11491.8 gi|383320421|ref|YP_005381262.1| - 4.6 7.5 7.7 4.1 7.6 1.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3213) HATPase_c PF02518.26 gi|383320422|ref|YP_005381263.1| - 2.2e-19 70.0 0.0 4.3e-19 69.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|383320422|ref|YP_005381263.1| - 7.2e-19 67.9 0.0 1.3e-18 67.1 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|383320422|ref|YP_005381263.1| - 1.4e-14 54.2 0.0 2.5e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|383320422|ref|YP_005381263.1| - 7.1e-09 35.8 0.0 1.3e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|383320422|ref|YP_005381263.1| - 7.1e-08 32.3 0.0 1.8e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|383320422|ref|YP_005381263.1| - 2.3e-07 31.0 0.0 5.7e-07 29.8 0.0 1.7 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|383320422|ref|YP_005381263.1| - 2e-05 24.5 0.0 6.5e-05 22.9 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|383320422|ref|YP_005381263.1| - 0.0019 18.4 0.0 0.0044 17.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_10 PF13596.6 gi|383320422|ref|YP_005381263.1| - 0.011 16.3 0.0 0.021 15.4 0.0 1.5 1 0 0 1 1 1 0 PAS domain Peptidase_S8 PF00082.22 gi|383320423|ref|YP_005381264.1| - 3.4e-64 217.0 18.0 6.4e-64 216.1 18.0 1.5 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.16 gi|383320423|ref|YP_005381264.1| - 2e-06 28.4 0.0 7.7e-06 26.5 0.0 2.1 1 0 0 1 1 1 1 Peptidase inhibitor I9 Peptidase_M23 PF01551.22 gi|383320423|ref|YP_005381264.1| - 0.00059 20.0 1.1 0.053 13.7 0.1 3.4 3 0 0 3 3 3 1 Peptidase family M23 He_PIG PF05345.12 gi|383320423|ref|YP_005381264.1| - 0.069 13.4 0.6 0.069 13.4 0.6 5.1 5 2 1 6 6 6 0 Putative Ig domain NPCBM_assoc PF10633.9 gi|383320423|ref|YP_005381264.1| - 0.16 12.2 5.2 0.073 13.3 1.1 2.7 4 0 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase FlgD_ig PF13860.6 gi|383320423|ref|YP_005381264.1| - 5.5 6.9 9.5 6.7 6.7 0.1 4.8 4 2 0 4 4 4 0 FlgD Ig-like domain RmlD_sub_bind PF04321.17 gi|383320424|ref|YP_005381265.1| - 7.7e-42 143.3 0.0 8.8e-42 143.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|383320424|ref|YP_005381265.1| - 4.2e-15 55.9 0.0 5.5e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|383320424|ref|YP_005381265.1| - 0.00019 20.9 0.0 0.00063 19.2 0.0 1.7 1 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|383320424|ref|YP_005381265.1| - 0.00025 20.3 0.0 0.4 9.8 0.0 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|383320424|ref|YP_005381265.1| - 0.013 14.7 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 Male sterility protein GDP_Man_Dehyd PF16363.5 gi|383320425|ref|YP_005381266.1| - 5.3e-66 223.3 0.0 3.3e-65 220.7 0.0 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|383320425|ref|YP_005381266.1| - 7.5e-63 212.2 0.0 9.2e-63 211.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|383320425|ref|YP_005381266.1| - 7.2e-19 67.8 0.0 1e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|383320425|ref|YP_005381266.1| - 7.4e-18 64.7 0.3 2.2e-16 59.8 0.3 2.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|383320425|ref|YP_005381266.1| - 9e-14 51.8 0.0 1.2e-13 51.4 0.0 1.3 1 1 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|383320425|ref|YP_005381266.1| - 1.2e-13 50.9 0.1 3.4e-11 42.8 0.0 2.6 1 1 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|383320425|ref|YP_005381266.1| - 1.5e-13 50.5 0.0 4.5e-13 49.0 0.0 1.6 2 0 0 2 2 2 1 RmlD substrate binding domain KR PF08659.10 gi|383320425|ref|YP_005381266.1| - 0.0001 22.3 0.7 0.019 14.9 0.7 2.3 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 gi|383320425|ref|YP_005381266.1| - 0.00012 21.7 0.0 0.0002 21.0 0.0 1.4 1 1 0 1 1 1 1 NmrA-like family TrkA_N PF02254.18 gi|383320425|ref|YP_005381266.1| - 0.00079 19.7 0.0 0.0015 18.7 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|383320425|ref|YP_005381266.1| - 0.039 14.2 0.1 0.063 13.5 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|383320425|ref|YP_005381266.1| - 0.055 12.9 0.0 0.2 11.1 0.0 1.8 2 0 0 2 2 2 0 short chain dehydrogenase YdjM PF04307.14 gi|383320426|ref|YP_005381267.1| - 3.3e-10 39.6 2.1 7.5e-09 35.1 0.9 2.1 1 1 1 2 2 2 2 LexA-binding, inner membrane-associated putative hydrolase NTP_transferase PF00483.23 gi|383320427|ref|YP_005381268.1| - 1.6e-41 142.6 0.0 2e-41 142.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|383320427|ref|YP_005381268.1| - 1.9e-18 65.4 30.0 1.8e-08 33.8 6.0 4.8 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|383320427|ref|YP_005381268.1| - 8.8e-15 55.4 0.1 1.2e-14 55.0 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|383320427|ref|YP_005381268.1| - 8.5e-06 25.4 22.5 5.1e-05 22.9 3.5 4.8 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|383320427|ref|YP_005381268.1| - 0.006 16.3 0.0 0.014 15.1 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|383320427|ref|YP_005381268.1| - 0.0061 14.7 1.2 0.011 13.9 1.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|383320427|ref|YP_005381268.1| - 0.15 11.0 0.4 1.4 7.7 0.1 2.1 1 1 1 2 2 2 0 L-fucokinase PGM_PMM_I PF02878.16 gi|383320428|ref|YP_005381269.1| - 1.8e-36 124.9 0.0 3.2e-36 124.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|383320428|ref|YP_005381269.1| - 2.3e-27 95.6 0.1 5.2e-27 94.5 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|383320428|ref|YP_005381269.1| - 3.7e-18 65.8 0.0 9.7e-18 64.4 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|383320428|ref|YP_005381269.1| - 1.5e-13 50.7 0.2 3.5e-13 49.5 0.2 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|383320428|ref|YP_005381269.1| - 0.0028 17.8 0.3 0.56 10.4 0.1 2.5 2 0 0 2 2 2 2 Damage-inducible protein CinA KH domain GATase_6 PF13522.6 gi|383320429|ref|YP_005381270.1| - 1.4e-05 25.3 0.1 1.9e-05 24.8 0.1 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase domain NTP_transferase PF00483.23 gi|383320430|ref|YP_005381271.1| - 2.6e-45 154.9 0.1 3.4e-45 154.6 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|383320430|ref|YP_005381271.1| - 1.7e-22 78.2 15.2 9.2e-12 44.2 2.0 5.5 1 1 6 7 7 7 6 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|383320430|ref|YP_005381271.1| - 1.4e-16 61.3 0.0 1.7e-16 60.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|383320430|ref|YP_005381271.1| - 2.6e-09 36.7 3.2 2.6e-09 36.7 3.2 5.6 6 0 0 6 6 6 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|383320430|ref|YP_005381271.1| - 3.1e-07 30.4 0.3 6.3e-06 26.1 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_4 PF13562.6 gi|383320430|ref|YP_005381271.1| - 0.03 14.5 0.1 0.26 11.5 0.1 2.3 1 1 0 1 1 1 0 Sugar nucleotidyl transferase Fucokinase PF07959.12 gi|383320430|ref|YP_005381271.1| - 0.048 12.6 2.2 1 8.2 0.0 2.7 2 1 0 2 2 2 0 L-fucokinase CTP_transf_3 PF02348.19 gi|383320430|ref|YP_005381271.1| - 0.06 13.3 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase ISAV_HA PF06215.11 gi|383320430|ref|YP_005381271.1| - 0.09 11.9 0.3 0.14 11.3 0.3 1.2 1 0 0 1 1 1 0 Infectious salmon anaemia virus haemagglutinin DUF4954 PF16314.5 gi|383320430|ref|YP_005381271.1| - 0.094 10.8 2.8 0.16 10.1 2.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Ribosomal_L40e PF01020.17 gi|383320431|ref|YP_005381272.1| - 1.8e-08 34.1 7.4 2.4e-08 33.7 7.4 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|383320431|ref|YP_005381272.1| - 0.0016 18.1 2.2 0.0022 17.7 2.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|383320431|ref|YP_005381272.1| - 0.0054 16.4 3.5 0.0086 15.7 3.5 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|383320431|ref|YP_005381272.1| - 0.0063 16.5 0.8 0.0068 16.4 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.18 gi|383320431|ref|YP_005381272.1| - 0.013 14.8 3.6 0.019 14.3 3.6 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Rubredoxin_2 PF18073.1 gi|383320431|ref|YP_005381272.1| - 0.033 13.9 1.5 0.64 9.8 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain HypA PF01155.19 gi|383320431|ref|YP_005381272.1| - 0.039 14.0 0.9 0.039 14.0 0.9 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_13 PF09855.9 gi|383320431|ref|YP_005381272.1| - 0.1 12.8 2.0 1.2 9.3 0.1 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_10 PF10058.9 gi|383320431|ref|YP_005381272.1| - 0.12 12.1 4.9 0.84 9.4 4.9 2.0 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein RNA_POL_M_15KD PF02150.16 gi|383320431|ref|YP_005381272.1| - 0.2 11.6 5.9 2.3 8.1 1.0 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_L37e PF01907.19 gi|383320431|ref|YP_005381272.1| - 0.26 11.5 5.9 0.4 10.9 5.9 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e DUF35_N PF12172.8 gi|383320431|ref|YP_005381272.1| - 0.42 10.5 6.8 0.41 10.6 4.3 2.0 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Caps_synth PF05704.12 gi|383320432|ref|YP_005381273.1| - 0.088 12.2 0.0 0.097 12.0 0.0 1.1 1 0 0 1 1 1 0 Capsular polysaccharide synthesis protein Fe_dep_repr_C PF02742.15 gi|383320433|ref|YP_005381274.1| - 1.2e-17 63.8 0.0 2e-17 63.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|383320433|ref|YP_005381274.1| - 1.1e-10 41.5 0.0 1.7e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|383320433|ref|YP_005381274.1| - 1.2e-06 28.3 0.0 1.5e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|383320433|ref|YP_005381274.1| - 0.0013 18.2 0.0 0.0032 17.0 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|383320433|ref|YP_005381274.1| - 0.0017 18.3 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|383320433|ref|YP_005381274.1| - 0.0018 18.1 0.0 0.0078 16.1 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|383320433|ref|YP_005381274.1| - 0.0045 16.9 0.0 0.026 14.5 0.0 1.8 1 1 1 2 2 2 1 Winged helix-turn-helix FeoC PF09012.10 gi|383320433|ref|YP_005381274.1| - 0.013 15.6 3.2 0.016 15.2 0.0 2.2 2 0 0 2 2 1 0 FeoC like transcriptional regulator HTH_Crp_2 PF13545.6 gi|383320433|ref|YP_005381274.1| - 0.015 15.3 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|383320433|ref|YP_005381274.1| - 0.017 14.8 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|383320433|ref|YP_005381274.1| - 0.028 14.2 0.0 0.045 13.6 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|383320433|ref|YP_005381274.1| - 0.036 14.2 0.0 0.057 13.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rio2_N PF09202.11 gi|383320433|ref|YP_005381274.1| - 0.047 13.9 0.0 0.4 10.9 0.0 2.1 1 1 1 2 2 2 0 Rio2, N-terminal HTH_5 PF01022.20 gi|383320433|ref|YP_005381274.1| - 0.066 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_26 PF13443.6 gi|383320433|ref|YP_005381274.1| - 0.074 13.5 0.0 10 6.6 0.0 2.2 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain GntR PF00392.21 gi|383320433|ref|YP_005381274.1| - 0.088 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|383320433|ref|YP_005381274.1| - 0.13 12.7 0.0 0.35 11.2 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator HTH_27 PF13463.6 gi|383320433|ref|YP_005381274.1| - 0.14 12.7 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|383320433|ref|YP_005381274.1| - 0.18 11.9 0.0 1.4 9.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_micro PF17007.5 gi|383320433|ref|YP_005381274.1| - 0.19 10.5 0.0 0.27 10.0 0.0 1.1 1 0 0 1 1 1 0 HTH-like HemN_C PF06969.16 gi|383320433|ref|YP_005381274.1| - 0.21 11.7 0.0 0.45 10.6 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain DUF505 PF04458.12 gi|383320433|ref|YP_005381274.1| - 0.26 9.6 0.0 0.31 9.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) CbiQ PF02361.16 gi|383320434|ref|YP_005381275.1| - 1.8e-28 99.7 15.1 2.7e-28 99.1 15.1 1.2 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|383320435|ref|YP_005381276.1| - 1.7e-25 90.1 0.0 2.5e-25 89.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320435|ref|YP_005381276.1| - 4.8e-11 43.0 0.0 0.00023 21.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383320435|ref|YP_005381276.1| - 2.4e-10 40.2 0.1 4.6e-05 22.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|383320435|ref|YP_005381276.1| - 7e-06 25.7 0.0 1.7e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|383320435|ref|YP_005381276.1| - 0.00014 21.7 0.0 0.0017 18.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|383320435|ref|YP_005381276.1| - 0.0003 21.3 0.0 0.00045 20.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|383320435|ref|YP_005381276.1| - 0.0012 18.8 0.1 0.0035 17.3 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|383320435|ref|YP_005381276.1| - 0.0031 17.8 0.0 0.024 14.9 0.0 2.3 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|383320435|ref|YP_005381276.1| - 0.0038 17.8 0.1 0.01 16.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|383320435|ref|YP_005381276.1| - 0.0041 17.3 0.1 0.0074 16.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|383320435|ref|YP_005381276.1| - 0.0047 16.5 0.0 0.0089 15.6 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.14 gi|383320435|ref|YP_005381276.1| - 0.008 16.2 0.2 0.071 13.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MeaB PF03308.16 gi|383320435|ref|YP_005381276.1| - 0.019 14.0 0.3 0.073 12.0 0.1 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|383320435|ref|YP_005381276.1| - 0.02 15.3 0.0 0.026 14.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|383320435|ref|YP_005381276.1| - 0.02 14.6 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|383320435|ref|YP_005381276.1| - 0.032 13.8 0.0 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.21 gi|383320435|ref|YP_005381276.1| - 0.034 13.5 0.1 0.053 12.9 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|383320435|ref|YP_005381276.1| - 0.049 13.3 0.0 0.12 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|383320435|ref|YP_005381276.1| - 0.093 11.9 0.0 0.51 9.5 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_PrkA PF08298.11 gi|383320435|ref|YP_005381276.1| - 0.12 11.3 0.0 0.22 10.4 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain MobB PF03205.14 gi|383320435|ref|YP_005381276.1| - 0.13 12.1 0.0 0.49 10.3 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.22 gi|383320435|ref|YP_005381276.1| - 0.17 12.3 0.0 0.39 11.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase KTI12 PF08433.10 gi|383320435|ref|YP_005381276.1| - 0.18 11.3 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NACHT PF05729.12 gi|383320435|ref|YP_005381276.1| - 0.18 11.7 0.0 0.34 10.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.15 gi|383320435|ref|YP_005381276.1| - 0.19 11.6 0.0 0.29 11.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|383320435|ref|YP_005381276.1| - 0.19 11.9 0.0 0.33 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain CbiM PF01891.16 gi|383320436|ref|YP_005381277.1| - 8.6e-37 127.0 20.5 9.7e-37 126.8 20.5 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF4131 PF13567.6 gi|383320436|ref|YP_005381277.1| - 1.9 8.1 10.6 0.076 12.7 3.9 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF4173 PF13777.6 gi|383320436|ref|YP_005381277.1| - 4.1 6.8 14.8 0.41 10.1 2.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4173) SIT PF15330.6 gi|383320437|ref|YP_005381278.1| - 0.69 10.4 0.0 0.69 10.4 0.0 2.0 2 0 0 2 2 2 0 SHP2-interacting transmembrane adaptor protein, SIT DUF2207 PF09972.9 gi|383320437|ref|YP_005381278.1| - 1.5 7.5 4.8 1.5 7.5 4.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) UL2 PF08196.11 gi|383320437|ref|YP_005381278.1| - 1.5 8.9 4.4 1.1 9.2 0.2 2.0 2 0 0 2 2 2 0 UL2 protein PALP PF00291.25 gi|383320438|ref|YP_005381279.1| - 5.1e-74 249.3 0.5 5.8e-74 249.1 0.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CxxCxxCC PF03692.15 gi|383320439|ref|YP_005381280.1| - 2.1e-06 28.3 3.1 3.2e-06 27.7 3.1 1.3 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Phos_pyr_kin PF08543.12 gi|383320440|ref|YP_005381281.1| - 4.6e-86 288.2 1.0 5.2e-86 288.0 1.0 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|383320440|ref|YP_005381281.1| - 1.1e-11 44.6 0.7 1.5e-11 44.1 0.7 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|383320440|ref|YP_005381281.1| - 0.0067 15.8 1.4 0.012 15.1 1.4 1.4 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family DDE_Tnp_1_5 PF13737.6 gi|383320440|ref|YP_005381281.1| - 0.057 13.7 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 Transposase DDE domain AP_endonuc_2 PF01261.24 gi|383320440|ref|YP_005381281.1| - 0.098 12.1 0.2 0.62 9.5 0.1 2.0 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Mu-like_Com PF10122.9 gi|383320441|ref|YP_005381282.1| - 0.0087 15.5 0.2 0.018 14.5 0.2 1.5 1 0 0 1 1 1 1 Mu-like prophage protein Com zf-IS66 PF13005.7 gi|383320441|ref|YP_005381282.1| - 0.037 14.4 1.0 0.037 14.4 1.0 2.0 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Met_10 PF02475.16 gi|383320442|ref|YP_005381283.1| - 1.6e-44 152.1 0.0 2.1e-44 151.7 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|383320442|ref|YP_005381283.1| - 5.7e-07 29.3 0.0 1.4e-06 28.0 0.0 1.7 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|383320442|ref|YP_005381283.1| - 9.6e-05 22.1 0.0 0.00016 21.4 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|383320442|ref|YP_005381283.1| - 0.0024 17.6 0.1 0.011 15.4 0.1 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|383320442|ref|YP_005381283.1| - 0.0091 16.7 0.0 0.018 15.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383320442|ref|YP_005381283.1| - 0.022 15.4 0.0 0.045 14.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Cupin_2 PF07883.11 gi|383320443|ref|YP_005381284.1| - 1.3e-15 56.9 0.6 2.2e-15 56.1 0.6 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|383320443|ref|YP_005381284.1| - 3.5e-05 23.7 0.2 4.3e-05 23.4 0.2 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|383320443|ref|YP_005381284.1| - 7.7e-05 22.3 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) PCO_ADO PF07847.12 gi|383320443|ref|YP_005381284.1| - 0.0062 16.0 0.0 0.0076 15.7 0.0 1.1 1 0 0 1 1 1 1 PCO_ADO Ectoine_synth PF06339.12 gi|383320443|ref|YP_005381284.1| - 0.033 14.4 0.0 0.036 14.3 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase DUF4131 PF13567.6 gi|383320443|ref|YP_005381284.1| - 0.099 12.3 0.0 0.16 11.6 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Na_Ala_symp PF01235.17 gi|383320444|ref|YP_005381285.1| - 4e-133 444.5 22.5 5.2e-133 444.1 22.5 1.0 1 0 0 1 1 1 1 Sodium:alanine symporter family zf-AN1 PF01428.16 gi|383320445|ref|YP_005381286.1| - 1.2e-07 31.8 9.8 1.7e-07 31.3 9.8 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger zf-HIT PF04438.16 gi|383320445|ref|YP_005381286.1| - 1.2 9.1 6.8 1.7 8.6 6.8 1.2 1 0 0 1 1 1 0 HIT zinc finger CxxCxxCC PF03692.15 gi|383320446|ref|YP_005381287.1| - 9.2e-11 42.3 4.4 1.6e-10 41.5 4.4 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Flavodoxin_5 PF12724.7 gi|383320447|ref|YP_005381288.1| - 7.6e-09 35.9 0.0 8.5e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|383320447|ref|YP_005381288.1| - 8.5e-08 32.0 0.0 1.2e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain HEAT_2 PF13646.6 gi|383320449|ref|YP_005381290.1| - 1.7e-35 121.3 17.8 2.3e-10 40.7 0.3 4.6 2 2 3 5 5 5 5 HEAT repeats HEAT_PBS PF03130.16 gi|383320449|ref|YP_005381290.1| - 4.4e-13 48.6 18.3 7.6e-06 26.1 0.1 7.4 7 0 0 7 7 7 4 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|383320449|ref|YP_005381290.1| - 4.8e-13 49.3 7.5 0.076 13.5 0.0 6.4 6 0 0 6 6 6 4 HEAT-like repeat Arm PF00514.23 gi|383320449|ref|YP_005381290.1| - 8.3e-11 41.5 1.4 0.00031 20.7 0.0 5.0 4 1 1 5 5 5 3 Armadillo/beta-catenin-like repeat HEAT PF02985.22 gi|383320449|ref|YP_005381290.1| - 3.8e-10 39.1 3.3 0.045 14.0 0.0 6.0 5 0 0 5 5 5 3 HEAT repeat Cnd1 PF12717.7 gi|383320449|ref|YP_005381290.1| - 0.00057 20.0 0.1 1.4 9.0 0.0 3.3 3 0 0 3 3 3 2 non-SMC mitotic condensation complex subunit 1 IFRD PF05004.13 gi|383320449|ref|YP_005381290.1| - 0.03 13.5 0.8 14 4.7 0.0 3.7 5 0 0 5 5 5 0 Interferon-related developmental regulator (IFRD) NS3_envE PF02723.14 gi|383320449|ref|YP_005381290.1| - 0.51 10.5 3.0 1.2 9.3 3.0 1.5 1 0 0 1 1 1 0 Non-structural protein NS3/Small envelope protein E zf_C2H2_13 PF18508.1 gi|383320450|ref|YP_005381291.1| - 0.00036 20.0 0.3 0.00061 19.3 0.3 1.4 1 0 0 1 1 1 1 Zinc finger domain Herpes_UL95 PF03038.14 gi|383320450|ref|YP_005381291.1| - 0.016 14.4 0.0 0.018 14.2 0.0 1.0 1 0 0 1 1 1 0 UL95 family Archease PF01951.16 gi|383320451|ref|YP_005381292.1| - 1.2e-39 135.7 0.3 1.3e-39 135.6 0.3 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.17 gi|383320452|ref|YP_005381293.1| - 7e-166 552.5 0.0 8e-166 552.3 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB TPR_2 PF07719.17 gi|383320453|ref|YP_005381294.1| - 4.1e-12 45.2 0.0 5.2e-07 29.3 0.1 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|383320453|ref|YP_005381294.1| - 1e-10 41.1 0.0 4.1e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 TPR repeat TPR_1 PF00515.28 gi|383320453|ref|YP_005381294.1| - 1.4e-09 37.3 0.0 1.8e-05 24.3 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|383320453|ref|YP_005381294.1| - 3.3e-07 30.6 0.1 4.9e-05 23.8 0.1 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|383320453|ref|YP_005381294.1| - 3.4e-07 29.9 0.0 1.3e-05 25.0 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|383320453|ref|YP_005381294.1| - 7.5e-06 26.5 0.0 9.9e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|383320453|ref|YP_005381294.1| - 3.6e-05 24.2 0.1 0.19 12.2 0.0 2.0 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|383320453|ref|YP_005381294.1| - 0.00025 21.3 0.2 0.00049 20.3 0.2 1.5 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383320453|ref|YP_005381294.1| - 0.00046 20.0 0.0 0.00096 19.0 0.0 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|383320453|ref|YP_005381294.1| - 0.00054 20.1 0.4 0.0097 16.0 0.1 1.8 1 1 1 2 2 2 2 Tetratricopeptide repeat TOM20_plant PF06552.12 gi|383320453|ref|YP_005381294.1| - 0.00086 19.1 0.0 0.23 11.2 0.0 2.1 1 1 1 2 2 2 2 Plant specific mitochondrial import receptor subunit TOM20 TPR_21 PF09976.9 gi|383320453|ref|YP_005381294.1| - 0.0029 17.4 0.0 0.0038 17.0 0.0 1.1 1 0 0 1 1 1 1 Tetratricopeptide repeat-like domain TPR_17 PF13431.6 gi|383320453|ref|YP_005381294.1| - 0.0037 17.5 0.0 0.85 10.1 0.0 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|383320453|ref|YP_005381294.1| - 0.032 13.7 1.3 0.23 10.9 0.1 2.4 2 1 0 2 2 2 0 SHNi-TPR TPR_6 PF13174.6 gi|383320453|ref|YP_005381294.1| - 0.034 14.8 0.1 0.49 11.1 0.0 2.6 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF1173 PF06666.11 gi|383320453|ref|YP_005381294.1| - 0.065 12.2 0.0 0.077 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1173) TAF1_subA PF14929.6 gi|383320453|ref|YP_005381294.1| - 0.13 11.6 0.0 0.42 10.0 0.0 1.7 2 0 0 2 2 2 0 TAF RNA Polymerase I subunit A ATP_bind_3 PF01171.20 gi|383320454|ref|YP_005381295.1| - 5.7e-15 55.5 0.0 9.8e-15 54.8 0.0 1.4 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|383320454|ref|YP_005381295.1| - 8.3e-07 28.1 0.0 1.4e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|383320454|ref|YP_005381295.1| - 0.011 14.8 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 0 NAD synthase PAPS_reduct PF01507.19 gi|383320454|ref|YP_005381295.1| - 0.037 14.1 0.0 0.062 13.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family zn-ribbon_14 PF16503.5 gi|383320454|ref|YP_005381295.1| - 0.049 13.1 1.5 0.049 13.1 1.5 3.1 3 0 0 3 3 3 0 Zinc-ribbon Asn_synthase PF00733.21 gi|383320454|ref|YP_005381295.1| - 0.067 12.8 0.0 0.095 12.3 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Zn_Tnp_IS91 PF14319.6 gi|383320454|ref|YP_005381295.1| - 0.72 9.9 7.6 6.7 6.8 0.2 2.9 3 0 0 3 3 3 0 Transposase zinc-binding domain ADK_lid PF05191.14 gi|383320454|ref|YP_005381295.1| - 5 7.2 11.7 4.1 7.5 0.1 3.9 4 1 1 5 5 5 0 Adenylate kinase, active site lid A2L_zn_ribbon PF08792.10 gi|383320454|ref|YP_005381295.1| - 5.2 6.9 7.0 17 5.2 0.3 3.4 3 0 0 3 3 3 0 A2L zinc ribbon domain Thymidylat_synt PF00303.19 gi|383320455|ref|YP_005381296.1| - 1.4e-11 44.0 0.2 1.5e-11 43.9 0.2 1.1 1 0 0 1 1 1 1 Thymidylate synthase NPCBM_assoc PF10633.9 gi|383320456|ref|YP_005381297.1| - 1.3e-23 83.0 13.0 1.5e-17 63.6 1.9 4.1 4 1 1 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.8 gi|383320456|ref|YP_005381297.1| - 5.4e-09 36.3 2.3 0.0092 16.2 0.0 4.0 2 1 2 4 4 4 3 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF4832 PF16116.5 gi|383320456|ref|YP_005381297.1| - 0.00025 21.0 0.2 0.00086 19.2 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4832) DUF11 PF01345.18 gi|383320456|ref|YP_005381297.1| - 0.00032 20.9 20.0 0.25 11.7 2.8 4.8 3 2 1 4 4 4 3 Domain of unknown function DUF11 CARDB PF07705.11 gi|383320456|ref|YP_005381297.1| - 0.0012 19.1 14.9 0.0057 16.9 1.6 4.1 2 2 2 4 4 4 2 CARDB fn3_5 PF06280.12 gi|383320456|ref|YP_005381297.1| - 0.0013 19.4 13.6 0.2 12.4 0.1 5.0 3 2 1 4 4 4 1 Fn3-like domain Transglut_N PF00868.20 gi|383320456|ref|YP_005381297.1| - 0.049 14.0 1.6 6.5 7.1 0.0 3.5 3 1 0 3 3 3 0 Transglutaminase family DUF3678 PF12435.8 gi|383320456|ref|YP_005381297.1| - 1.8 8.0 4.6 0.59 9.5 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3678) ABC2_membrane_2 PF12679.7 gi|383320457|ref|YP_005381298.1| - 1.6e-42 145.8 23.8 1.8e-42 145.6 23.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383320457|ref|YP_005381298.1| - 7.6e-06 26.0 18.8 7.6e-06 26.0 18.8 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|383320457|ref|YP_005381298.1| - 2.2e-05 24.0 20.3 2.2e-05 24.0 20.3 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|383320457|ref|YP_005381298.1| - 9.9e-05 22.0 15.4 9.9e-05 22.0 15.4 2.9 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|383320458|ref|YP_005381299.1| - 2e-25 89.9 0.0 3.7e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320458|ref|YP_005381299.1| - 5e-10 39.7 0.1 1.3e-06 28.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|383320458|ref|YP_005381299.1| - 3.3e-08 34.1 0.1 7.5e-08 33.0 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|383320458|ref|YP_005381299.1| - 0.02 14.6 0.0 2.7 7.6 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain SMC_N PF02463.19 gi|383320458|ref|YP_005381299.1| - 0.021 14.3 0.2 7.7 5.9 0.0 2.5 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|383320458|ref|YP_005381299.1| - 0.021 14.4 0.0 0.04 13.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|383320458|ref|YP_005381299.1| - 0.034 14.7 0.0 0.077 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|383320458|ref|YP_005381299.1| - 0.14 12.0 0.2 0.32 10.8 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain BCA_ABC_TP_C PF12399.8 gi|383320458|ref|YP_005381299.1| - 0.14 12.1 0.0 2.2 8.3 0.0 2.5 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter HTH_24 PF13412.6 gi|383320460|ref|YP_005381301.1| - 3.7e-20 71.2 0.0 9.5e-10 37.9 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|383320460|ref|YP_005381301.1| - 6.1e-09 35.6 0.0 0.00065 19.5 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|383320460|ref|YP_005381301.1| - 2.6e-07 30.6 0.0 0.00088 19.3 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain MarR PF01047.22 gi|383320460|ref|YP_005381301.1| - 8.1e-06 25.7 0.0 0.14 12.1 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|383320460|ref|YP_005381301.1| - 1.9e-05 24.4 0.0 0.03 14.2 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|383320460|ref|YP_005381301.1| - 8.2e-05 22.3 0.0 0.026 14.3 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|383320460|ref|YP_005381301.1| - 0.0011 18.9 0.0 0.43 10.5 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|383320460|ref|YP_005381301.1| - 0.0013 18.9 0.1 0.29 11.3 0.0 2.3 1 1 1 2 2 2 1 B-block binding subunit of TFIIIC HTH_34 PF13601.6 gi|383320460|ref|YP_005381301.1| - 0.01 16.0 0.0 0.034 14.3 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 gi|383320460|ref|YP_005381301.1| - 0.024 14.3 0.0 0.074 12.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 FaeA PF04703.12 gi|383320460|ref|YP_005381301.1| - 0.072 13.5 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein STN1_2 PF09170.10 gi|383320460|ref|YP_005381301.1| - 0.096 12.9 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 Fe_dep_repress PF01325.19 gi|383320460|ref|YP_005381301.1| - 0.12 12.6 0.0 2.7 8.2 0.0 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.17 gi|383320460|ref|YP_005381301.1| - 0.14 12.0 0.0 0.8 9.6 0.0 1.9 2 0 0 2 2 2 0 TFIIE alpha subunit Mnd1 PF03962.15 gi|383320460|ref|YP_005381301.1| - 0.15 12.3 0.0 1.2 9.5 0.0 2.1 2 0 0 2 2 2 0 Mnd1 HTH domain HATPase_c PF02518.26 gi|383320461|ref|YP_005381302.1| - 6.4e-17 62.1 0.0 1.1e-16 61.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|383320461|ref|YP_005381302.1| - 0.0003 21.0 0.0 0.00054 20.2 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.7 gi|383320461|ref|YP_005381302.1| - 0.0097 16.1 0.0 0.22 11.7 0.0 2.5 1 1 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 gi|383320461|ref|YP_005381302.1| - 0.019 14.8 0.0 0.059 13.3 0.0 1.9 1 1 0 1 1 1 0 GHKL domain PAS_8 PF13188.7 gi|383320461|ref|YP_005381302.1| - 0.021 14.9 0.0 0.049 13.7 0.0 1.7 1 0 0 1 1 1 0 PAS domain PAS_10 PF13596.6 gi|383320461|ref|YP_005381302.1| - 0.043 14.4 0.0 0.38 11.4 0.0 2.2 2 0 0 2 2 2 0 PAS domain HisKA PF00512.25 gi|383320461|ref|YP_005381302.1| - 0.047 13.7 0.1 0.17 11.9 0.0 2.0 1 1 0 1 1 1 0 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|383320461|ref|YP_005381302.1| - 0.059 13.4 0.0 0.36 10.9 0.0 2.3 2 2 1 3 3 3 0 PAS fold PAS_9 PF13426.7 gi|383320461|ref|YP_005381302.1| - 0.17 12.1 0.0 2.2 8.6 0.0 2.3 2 0 0 2 2 2 0 PAS domain PadR PF03551.14 gi|383320462|ref|YP_005381303.1| - 2.1e-20 72.4 0.0 3.2e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|383320462|ref|YP_005381303.1| - 1.1e-07 32.5 0.1 1.5e-07 32.1 0.1 1.2 1 0 0 1 1 1 1 Replication terminator protein DUF4364 PF14277.6 gi|383320462|ref|YP_005381303.1| - 6.7e-06 25.9 0.1 9.3e-06 25.5 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF505 PF04458.12 gi|383320462|ref|YP_005381303.1| - 1.4e-05 23.7 0.0 1.4e-05 23.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) DUF3116 PF11313.8 gi|383320462|ref|YP_005381303.1| - 0.00018 21.3 0.0 0.0003 20.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) HTH_34 PF13601.6 gi|383320462|ref|YP_005381303.1| - 0.00054 20.1 0.0 0.00096 19.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|383320462|ref|YP_005381303.1| - 0.00072 19.5 0.4 0.0019 18.2 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix ABC_tran PF00005.27 gi|383320463|ref|YP_005381304.1| - 4.2e-29 101.8 0.0 7.3e-29 101.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320463|ref|YP_005381304.1| - 4.3e-13 49.7 0.1 3.9e-09 36.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|383320463|ref|YP_005381304.1| - 2.5e-07 31.3 0.1 1.8e-06 28.6 0.0 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|383320463|ref|YP_005381304.1| - 0.00013 22.5 0.1 0.00027 21.5 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|383320463|ref|YP_005381304.1| - 0.00036 20.4 0.1 0.4 10.3 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_27 PF13514.6 gi|383320463|ref|YP_005381304.1| - 0.0058 16.2 0.4 0.1 12.2 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|383320463|ref|YP_005381304.1| - 0.0071 16.1 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|383320463|ref|YP_005381304.1| - 0.0089 16.5 0.4 0.11 12.9 0.1 2.9 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) Cellulase PF00150.18 gi|383320463|ref|YP_005381304.1| - 0.035 13.5 0.0 0.29 10.5 0.0 2.0 1 1 1 2 2 2 0 Cellulase (glycosyl hydrolase family 5) AAA_33 PF13671.6 gi|383320463|ref|YP_005381304.1| - 0.091 12.9 0.1 0.41 10.8 0.1 2.1 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|383320463|ref|YP_005381304.1| - 0.14 12.1 0.0 0.28 11.1 0.0 1.7 1 1 0 1 1 1 0 Rad17 P-loop domain STPPase_N PF16891.5 gi|383320463|ref|YP_005381304.1| - 0.14 12.6 0.1 10 6.6 0.0 3.1 3 0 0 3 3 3 0 Serine-threonine protein phosphatase N-terminal domain ABC2_membrane_3 PF12698.7 gi|383320464|ref|YP_005381305.1| - 9.6e-53 179.5 31.2 1.1e-52 179.2 31.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|383320464|ref|YP_005381305.1| - 3e-34 118.3 31.0 8e-34 116.9 20.5 2.9 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|383320464|ref|YP_005381305.1| - 3.9e-14 52.6 25.1 7e-14 51.8 25.1 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|383320464|ref|YP_005381305.1| - 0.00039 20.0 9.7 0.00039 20.0 9.7 2.5 2 1 0 2 2 2 1 CcmB protein ABC2_membrane_4 PF12730.7 gi|383320464|ref|YP_005381305.1| - 0.012 15.6 11.4 0.012 15.6 11.4 3.2 2 1 1 3 3 3 0 ABC-2 family transporter protein CpXC PF14353.6 gi|383320465|ref|YP_005381306.1| - 0.11 12.6 0.2 0.52 10.4 0.1 2.3 2 0 0 2 2 2 0 CpXC protein PDDEXK_3 PF13366.6 gi|383320467|ref|YP_005381308.1| - 4.8e-31 107.6 0.1 5.4e-31 107.4 0.1 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF116 PF01976.17 gi|383320468|ref|YP_005381309.1| - 4e-48 162.9 0.0 4.8e-48 162.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 TPP_enzyme_C PF02775.21 gi|383320469|ref|YP_005381310.1| - 1.1e-27 96.7 0.1 2.2e-27 95.7 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|383320469|ref|YP_005381310.1| - 1.2e-11 44.8 0.3 5.8e-11 42.6 0.3 2.0 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.18 gi|383320469|ref|YP_005381310.1| - 1.6e-08 34.3 0.1 5e-08 32.7 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|383320469|ref|YP_005381310.1| - 2.1e-06 27.3 11.7 0.00025 20.7 2.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383320469|ref|YP_005381310.1| - 0.00027 20.9 11.9 0.071 13.2 1.9 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383320469|ref|YP_005381310.1| - 0.0025 17.9 12.9 0.44 10.7 2.2 3.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383320469|ref|YP_005381310.1| - 0.015 15.4 13.7 2.2 8.5 14.2 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383320469|ref|YP_005381310.1| - 0.017 15.3 10.7 0.017 15.3 10.7 2.2 2 1 0 2 2 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383320469|ref|YP_005381310.1| - 0.039 14.0 15.8 0.068 13.3 1.2 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|383320469|ref|YP_005381310.1| - 0.45 11.1 8.6 3.2 8.4 2.3 2.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383320469|ref|YP_005381310.1| - 0.9 10.2 16.7 2.6 8.7 11.2 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383320469|ref|YP_005381310.1| - 4.7 8.2 11.9 4.2 8.4 2.1 2.9 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain POR PF01558.18 gi|383320470|ref|YP_005381311.1| - 1.3e-36 126.4 0.2 1.5e-36 126.1 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase CD99L2 PF12301.8 gi|383320470|ref|YP_005381311.1| - 0.039 14.3 0.1 0.055 13.8 0.1 1.2 1 0 0 1 1 1 0 CD99 antigen like protein 2 HATPase_c PF02518.26 gi|383320471|ref|YP_005381312.1| - 2.2e-21 76.4 0.0 3.8e-21 75.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|383320471|ref|YP_005381312.1| - 1.1e-07 32.1 0.0 1.9e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|383320471|ref|YP_005381312.1| - 1.9e-07 31.3 0.0 3.5e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|383320471|ref|YP_005381312.1| - 2.1e-05 24.5 0.0 5.1e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|383320471|ref|YP_005381312.1| - 2.1e-05 24.7 0.0 3.8e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|383320471|ref|YP_005381312.1| - 7.4e-05 22.7 0.0 0.00016 21.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|383320471|ref|YP_005381312.1| - 0.00012 22.1 0.0 0.00021 21.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|383320471|ref|YP_005381312.1| - 0.013 15.4 0.0 0.029 14.3 0.0 1.6 1 0 0 1 1 1 0 GHKL domain AMP-binding_C_2 PF14535.6 gi|383320472|ref|YP_005381313.1| - 6.1e-21 74.5 0.0 1.1e-20 73.7 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|383320472|ref|YP_005381313.1| - 6.8e-11 41.4 0.0 1e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|383320472|ref|YP_005381313.1| - 0.0095 15.0 0.0 0.061 12.3 0.0 1.9 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE Tad PF13400.6 gi|383320474|ref|YP_005381315.1| - 0.064 13.6 0.7 0.11 12.8 0.7 1.4 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like UvrB PF12344.8 gi|383320474|ref|YP_005381315.1| - 0.34 10.8 0.1 0.34 10.8 0.1 2.4 3 0 0 3 3 3 0 Ultra-violet resistance protein B Ferritin PF00210.24 gi|383320475|ref|YP_005381316.1| - 3.8e-32 111.2 1.0 4.2e-32 111.0 1.0 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|383320475|ref|YP_005381316.1| - 4.5e-08 33.6 2.5 1.3e-07 32.1 2.2 1.8 1 1 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|383320475|ref|YP_005381316.1| - 0.00034 20.4 0.7 0.00053 19.8 0.3 1.5 2 0 0 2 2 2 1 Ubiquinone biosynthesis protein COQ7 DUF892 PF05974.12 gi|383320475|ref|YP_005381316.1| - 0.0013 18.8 0.1 0.0018 18.3 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin_2 PF13668.6 gi|383320475|ref|YP_005381316.1| - 0.037 14.2 1.4 0.56 10.4 1.2 2.0 1 1 0 1 1 1 0 Ferritin-like domain Mn_catalase PF05067.12 gi|383320475|ref|YP_005381316.1| - 0.076 12.0 0.6 5.2 6.0 0.0 2.0 1 1 1 2 2 2 0 Manganese containing catalase DUF4337 PF14235.6 gi|383320477|ref|YP_005381318.1| - 0.085 13.0 0.5 0.11 12.6 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) Hydrolase_4 PF12146.8 gi|383320478|ref|YP_005381319.1| - 3.5e-11 42.8 0.0 5e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|383320478|ref|YP_005381319.1| - 1.7e-10 41.9 0.0 2.1e-10 41.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|383320478|ref|YP_005381319.1| - 8.5e-10 38.7 0.0 1.1e-07 31.8 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold LIDHydrolase PF10230.9 gi|383320478|ref|YP_005381319.1| - 0.00095 18.8 0.0 0.0013 18.4 0.0 1.1 1 0 0 1 1 1 1 Lipid-droplet associated hydrolase Abhydrolase_3 PF07859.13 gi|383320478|ref|YP_005381319.1| - 0.0017 18.2 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|383320478|ref|YP_005381319.1| - 0.0053 16.3 0.0 0.55 9.7 0.0 2.3 2 0 0 2 2 2 1 Prolyl oligopeptidase family Palm_thioest PF02089.15 gi|383320478|ref|YP_005381319.1| - 0.01 15.7 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase DUF2920 PF11144.8 gi|383320478|ref|YP_005381319.1| - 0.022 14.0 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) zf-ribbon_3 PF13248.6 gi|383320479|ref|YP_005381320.1| - 5.4e-05 22.5 2.4 8.1e-05 21.9 2.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|383320479|ref|YP_005381320.1| - 0.0016 18.3 1.4 0.0031 17.4 1.4 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.7 gi|383320479|ref|YP_005381320.1| - 0.0018 18.3 0.2 0.0024 17.8 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|383320479|ref|YP_005381320.1| - 0.013 15.5 3.3 0.02 15.0 3.3 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-RING_7 PF02591.15 gi|383320479|ref|YP_005381320.1| - 0.019 15.1 0.6 0.51 10.6 0.0 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|383320479|ref|YP_005381320.1| - 0.026 14.3 1.2 0.052 13.3 1.2 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|383320479|ref|YP_005381320.1| - 0.037 14.8 0.1 0.045 14.5 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon family zf-CHCC PF10276.9 gi|383320479|ref|YP_005381320.1| - 0.042 13.9 0.4 0.12 12.4 0.0 1.9 2 0 0 2 2 2 0 Zinc-finger domain zf-C2HC_2 PF13913.6 gi|383320479|ref|YP_005381320.1| - 0.3 11.0 5.3 1.7 8.6 0.4 2.5 2 0 0 2 2 2 0 zinc-finger of a C2HC-type TF_Zn_Ribbon PF08271.12 gi|383320479|ref|YP_005381320.1| - 1.6 8.3 4.6 4 7.0 4.6 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|383320480|ref|YP_005381321.1| - 0.00025 21.0 0.1 0.00033 20.6 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|383320480|ref|YP_005381321.1| - 0.00091 19.9 0.1 0.0012 19.5 0.1 1.3 1 0 0 1 1 1 1 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|383320480|ref|YP_005381321.1| - 0.0084 15.5 1.1 0.013 14.8 1.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|383320480|ref|YP_005381321.1| - 0.01 15.8 0.1 0.016 15.3 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|383320480|ref|YP_005381321.1| - 0.014 15.1 4.4 0.034 13.9 4.4 1.6 1 1 0 1 1 1 0 zinc-ribbon domain RecR PF02132.15 gi|383320480|ref|YP_005381321.1| - 0.019 14.5 0.4 0.038 13.6 0.4 1.5 1 0 0 1 1 1 0 RecR protein Ferritin PF00210.24 gi|383320481|ref|YP_005381322.1| - 1.8e-10 40.9 0.1 2.2e-10 40.6 0.1 1.2 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|383320481|ref|YP_005381322.1| - 1.4e-07 31.9 0.5 4.9e-07 30.2 0.5 1.7 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|383320481|ref|YP_005381322.1| - 4.1e-06 27.0 0.0 4.9e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like domain COQ7 PF03232.13 gi|383320481|ref|YP_005381322.1| - 4.3e-05 23.4 0.1 0.28 11.0 0.1 2.1 1 1 1 2 2 2 2 Ubiquinone biosynthesis protein COQ7 Ferritin-like PF12902.7 gi|383320481|ref|YP_005381322.1| - 0.00035 20.5 0.0 0.00036 20.5 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like Mn_catalase PF05067.12 gi|383320481|ref|YP_005381322.1| - 0.017 14.1 0.4 0.027 13.5 0.1 1.5 1 1 1 2 2 2 0 Manganese containing catalase DUF2383 PF09537.10 gi|383320481|ref|YP_005381322.1| - 0.018 15.4 0.1 0.048 14.0 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) CreA PF05981.12 gi|383320481|ref|YP_005381322.1| - 0.088 12.8 0.0 3.1 7.8 0.0 2.1 2 0 0 2 2 2 0 CreA protein MarC PF01914.17 gi|383320482|ref|YP_005381323.1| - 0.066 12.6 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 MarC family integral membrane protein LigD_N PF13298.6 gi|383320484|ref|YP_005381325.1| - 6.1e-40 135.8 0.0 7.7e-40 135.4 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) DUF3006 PF11213.8 gi|383320485|ref|YP_005381326.1| - 8.5e-19 67.5 0.4 9.8e-19 67.4 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) CHS5_N PF16892.5 gi|383320485|ref|YP_005381326.1| - 8.3e-08 32.1 0.0 1e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Chitin biosynthesis protein CHS5 N-terminus eIF-5a PF01287.20 gi|383320485|ref|YP_005381326.1| - 0.072 13.2 0.2 0.31 11.2 0.2 1.9 1 1 0 1 1 1 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold Lactamase_B PF00753.27 gi|383320486|ref|YP_005381327.1| - 2.6e-17 63.5 0.5 6.5e-17 62.2 0.5 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|383320486|ref|YP_005381327.1| - 3e-09 36.7 0.1 7.5e-09 35.4 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|383320486|ref|YP_005381327.1| - 0.047 13.1 0.0 0.083 12.3 0.0 1.4 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Spt5-NGN PF03439.13 gi|383320487|ref|YP_005381328.1| - 1.1e-23 83.0 0.5 1.9e-23 82.2 0.5 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|383320487|ref|YP_005381328.1| - 3.5e-09 36.3 1.2 7.1e-08 32.1 0.1 2.4 2 0 0 2 2 2 1 KOW motif NusG PF02357.19 gi|383320487|ref|YP_005381328.1| - 0.037 14.5 0.4 0.42 11.1 0.1 2.4 2 1 0 2 2 2 0 Transcription termination factor nusG Motile_Sperm PF00635.26 gi|383320487|ref|YP_005381328.1| - 0.091 12.6 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 MSP (Major sperm protein) domain SecE PF00584.20 gi|383320488|ref|YP_005381329.1| - 1.1e-05 25.3 0.5 1.3e-05 25.1 0.5 1.2 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Potass_KdpF PF09604.10 gi|383320488|ref|YP_005381329.1| - 2.1 8.5 6.6 3 7.9 6.6 1.2 1 0 0 1 1 1 0 F subunit of K+-transporting ATPase (Potass_KdpF) tRNA_deacylase PF04414.12 gi|383320489|ref|YP_005381330.1| - 1.8e-67 226.8 0.0 6.2e-67 225.1 0.0 1.9 2 0 0 2 2 2 1 D-aminoacyl-tRNA deacylase Tubulin PF00091.25 gi|383320489|ref|YP_005381330.1| - 3.2e-40 138.5 0.3 6.1e-40 137.5 0.3 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|383320489|ref|YP_005381330.1| - 5.4e-31 106.7 2.7 5.4e-31 106.7 2.7 2.4 3 0 0 3 3 3 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.6 gi|383320489|ref|YP_005381330.1| - 0.13 11.4 3.6 0.059 12.5 0.2 2.0 2 0 0 2 2 2 0 Tubulin like Syntaxin-6_N PF09177.11 gi|383320490|ref|YP_005381331.1| - 0.023 15.2 0.5 0.05 14.2 0.4 1.8 1 1 0 1 1 1 0 Syntaxin 6, N-terminal HisKA PF00512.25 gi|383320490|ref|YP_005381331.1| - 0.03 14.3 0.0 0.08 13.0 0.0 1.7 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain CheZ PF04344.13 gi|383320490|ref|YP_005381331.1| - 0.062 13.2 0.1 0.082 12.8 0.1 1.2 1 0 0 1 1 1 0 Chemotaxis phosphatase, CheZ FCD PF07729.12 gi|383320490|ref|YP_005381331.1| - 0.094 13.1 5.6 0.04 14.3 3.1 1.7 2 1 0 2 2 2 0 FCD domain OAD_gamma PF04277.13 gi|383320490|ref|YP_005381331.1| - 0.11 13.1 0.0 0.18 12.4 0.0 1.3 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Exonuc_VII_S PF02609.16 gi|383320490|ref|YP_005381331.1| - 0.13 12.3 1.7 4.4 7.4 0.1 2.8 2 0 0 2 2 2 0 Exonuclease VII small subunit DIM PF08194.12 gi|383320491|ref|YP_005381332.1| - 0.092 13.0 0.9 0.16 12.2 0.9 1.4 1 0 0 1 1 1 0 DIM protein Met_10 PF02475.16 gi|383320492|ref|YP_005381333.1| - 3.3e-58 196.7 0.0 4.9e-58 196.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|383320492|ref|YP_005381333.1| - 6.3e-17 61.2 0.5 3.9e-16 58.7 0.0 2.2 2 0 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain MTS PF05175.14 gi|383320492|ref|YP_005381333.1| - 2.8e-05 23.7 0.0 4.8e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|383320492|ref|YP_005381333.1| - 3.1e-05 23.7 0.0 5.1e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|383320492|ref|YP_005381333.1| - 6.2e-05 23.6 0.0 0.00018 22.1 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|383320492|ref|YP_005381333.1| - 0.007 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PRMT5 PF05185.16 gi|383320492|ref|YP_005381333.1| - 0.0072 16.2 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase PrmA PF06325.13 gi|383320492|ref|YP_005381333.1| - 0.023 14.1 0.0 0.033 13.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF2070 PF09843.9 gi|383320493|ref|YP_005381334.1| - 5.3e-184 612.7 17.3 6.1e-184 612.5 17.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF555 PF04475.12 gi|383320494|ref|YP_005381335.1| - 5.1e-50 168.0 0.2 5.9e-50 167.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.6 gi|383320494|ref|YP_005381335.1| - 0.0033 17.1 0.3 0.0054 16.4 0.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|383320494|ref|YP_005381335.1| - 0.01 15.2 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Dodecin PF07311.12 gi|383320494|ref|YP_005381335.1| - 0.059 13.6 0.1 0.2 12.0 0.0 1.8 2 0 0 2 2 2 0 Dodecin DUF357 PF04010.13 gi|383320495|ref|YP_005381336.1| - 2.2e-28 98.1 0.2 2.6e-28 97.9 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF87 PF01935.17 gi|383320496|ref|YP_005381337.1| - 3.5e-39 135.2 0.0 5.7e-39 134.5 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|383320496|ref|YP_005381337.1| - 7.1e-07 28.2 0.0 0.0027 16.4 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|383320496|ref|YP_005381337.1| - 7.8e-05 22.8 0.1 0.00016 21.8 0.1 1.6 1 0 0 1 1 1 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|383320496|ref|YP_005381337.1| - 0.00012 21.1 0.0 0.0089 15.0 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|383320496|ref|YP_005381337.1| - 0.00026 20.0 0.0 0.0031 16.5 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain ResIII PF04851.15 gi|383320496|ref|YP_005381337.1| - 0.02 14.9 0.0 0.056 13.5 0.0 1.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA PF00004.29 gi|383320496|ref|YP_005381337.1| - 0.034 14.6 0.0 0.8 10.1 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T4SS-DNA_transf PF02534.14 gi|383320496|ref|YP_005381337.1| - 0.12 11.1 0.0 0.17 10.6 0.0 1.1 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer MatC_N PF07158.11 gi|383320496|ref|YP_005381337.1| - 0.18 11.8 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 Dicarboxylate carrier protein MatC N-terminus TP_methylase PF00590.20 gi|383320497|ref|YP_005381338.1| - 3.5e-19 69.6 0.1 4.1e-19 69.4 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases UDG PF03167.19 gi|383320498|ref|YP_005381339.1| - 3.6e-47 160.2 0.0 4.4e-47 160.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily MS_channel PF00924.18 gi|383320499|ref|YP_005381340.1| - 1.4e-49 168.4 0.5 1.4e-49 168.4 0.5 2.3 2 0 0 2 2 2 1 Mechanosensitive ion channel Colicin_V PF02674.16 gi|383320499|ref|YP_005381340.1| - 0.0049 16.9 10.7 0.099 12.6 0.6 2.5 1 1 1 2 2 2 2 Colicin V production protein SieB PF14163.6 gi|383320499|ref|YP_005381340.1| - 0.019 14.5 0.1 1.1 8.7 0.1 2.4 2 0 0 2 2 2 0 Super-infection exclusion protein B YajC PF02699.15 gi|383320499|ref|YP_005381340.1| - 0.46 10.4 0.1 0.46 10.4 0.1 2.2 3 0 0 3 3 3 0 Preprotein translocase subunit Tetraspanin PF00335.20 gi|383320499|ref|YP_005381340.1| - 2.5 7.8 4.7 3.2 7.4 3.8 1.7 1 1 0 1 1 1 0 Tetraspanin family Flavodoxin_5 PF12724.7 gi|383320500|ref|YP_005381341.1| - 5.3e-09 36.5 0.0 5.6e-07 29.9 0.0 2.1 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|383320500|ref|YP_005381341.1| - 1.9e-05 24.9 0.0 0.00015 22.0 0.0 2.0 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.15 gi|383320500|ref|YP_005381341.1| - 0.0029 17.4 0.0 0.0067 16.2 0.0 1.8 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|383320500|ref|YP_005381341.1| - 0.012 15.3 0.0 0.021 14.5 0.0 1.7 1 1 0 1 1 1 0 Flavodoxin-like fold Flavodoxin_3 PF12641.7 gi|383320500|ref|YP_005381341.1| - 0.031 14.0 0.0 0.083 12.6 0.0 1.9 1 1 0 1 1 1 0 Flavodoxin domain OrfB_Zn_ribbon PF07282.11 gi|383320501|ref|YP_005381342.1| - 5e-24 84.0 0.3 9.3e-24 83.2 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|383320501|ref|YP_005381342.1| - 1.7e-23 83.1 0.2 4.6e-23 81.7 0.2 1.7 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|383320501|ref|YP_005381342.1| - 1.1e-15 56.8 1.1 2.8e-15 55.5 1.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|383320501|ref|YP_005381342.1| - 0.02 14.9 1.9 0.038 14.0 1.9 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|383320501|ref|YP_005381342.1| - 0.031 13.9 3.2 0.031 13.9 3.2 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain HhH-GPD PF00730.25 gi|383320501|ref|YP_005381342.1| - 0.11 12.9 0.2 0.32 11.5 0.2 1.8 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein Med16 PF11635.8 gi|383320501|ref|YP_005381342.1| - 0.15 9.9 0.2 0.21 9.4 0.2 1.1 1 0 0 1 1 1 0 Mediator complex subunit 16 TF_Zn_Ribbon PF08271.12 gi|383320501|ref|YP_005381342.1| - 0.16 11.5 4.2 1.6 8.3 0.0 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding RecR PF02132.15 gi|383320501|ref|YP_005381342.1| - 0.31 10.6 5.4 4.2 7.0 0.6 3.2 2 1 1 3 3 3 0 RecR protein DUF4258 PF14076.6 gi|383320502|ref|YP_005381343.1| - 1.6e-06 28.4 0.1 2e-06 28.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) MazE_antitoxin PF04014.18 gi|383320503|ref|YP_005381344.1| - 8.8e-11 41.5 0.6 1.1e-10 41.1 0.6 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin zf-ribbon_3 PF13248.6 gi|383320503|ref|YP_005381344.1| - 0.0044 16.4 0.6 0.29 10.6 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|383320503|ref|YP_005381344.1| - 0.028 14.4 0.9 0.043 13.8 0.9 1.3 1 0 0 1 1 1 0 zinc-ribbons SymE_toxin PF08845.10 gi|383320503|ref|YP_005381344.1| - 0.094 12.8 0.1 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system TF_Zn_Ribbon PF08271.12 gi|383320503|ref|YP_005381344.1| - 0.7 9.5 5.7 21 4.7 0.1 3.0 2 1 1 3 3 3 0 TFIIB zinc-binding His_biosynth PF00977.21 gi|383320504|ref|YP_005381345.1| - 4.4e-72 242.2 2.8 5e-72 242.1 2.8 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|383320504|ref|YP_005381345.1| - 8.8e-08 31.6 0.0 0.0003 20.0 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|383320504|ref|YP_005381345.1| - 4.3e-06 26.4 2.4 5.1e-06 26.1 0.4 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase DHO_dh PF01180.21 gi|383320504|ref|YP_005381345.1| - 4.5e-06 26.1 0.2 8.1e-06 25.2 0.2 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NanE PF04131.14 gi|383320504|ref|YP_005381345.1| - 3.1e-05 23.2 0.2 0.011 14.9 0.1 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|383320504|ref|YP_005381345.1| - 5.9e-05 22.5 0.6 0.0077 15.6 0.2 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|383320504|ref|YP_005381345.1| - 0.00011 21.3 8.0 0.0014 17.7 3.4 2.4 2 1 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain Trp_syntA PF00290.20 gi|383320504|ref|YP_005381345.1| - 0.00024 20.1 0.4 0.01 14.7 0.2 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain TMP-TENI PF02581.17 gi|383320504|ref|YP_005381345.1| - 0.00031 20.1 1.4 0.00079 18.8 0.4 2.0 2 0 0 2 2 2 1 Thiamine monophosphate synthase DUF561 PF04481.12 gi|383320504|ref|YP_005381345.1| - 0.00036 19.8 0.5 0.00052 19.3 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF561) IGPS PF00218.21 gi|383320504|ref|YP_005381345.1| - 0.0015 17.7 0.0 0.0054 15.9 0.0 1.8 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase PEP_mutase PF13714.6 gi|383320504|ref|YP_005381345.1| - 0.003 17.1 0.1 0.48 9.8 0.0 2.3 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase FMN_dh PF01070.18 gi|383320504|ref|YP_005381345.1| - 0.004 16.2 0.2 0.0082 15.2 0.2 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase PcrB PF01884.17 gi|383320504|ref|YP_005381345.1| - 0.0048 16.4 1.1 0.31 10.4 0.0 2.2 2 0 0 2 2 2 1 PcrB family G3P_antiterm PF04309.12 gi|383320504|ref|YP_005381345.1| - 0.0086 15.5 1.4 0.017 14.5 0.3 1.9 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator DeoC PF01791.9 gi|383320504|ref|YP_005381345.1| - 0.016 14.8 0.1 0.023 14.3 0.1 1.2 1 0 0 1 1 1 0 DeoC/LacD family aldolase Ribul_P_3_epim PF00834.19 gi|383320504|ref|YP_005381345.1| - 0.095 12.1 1.0 0.85 9.0 0.1 2.3 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family MFS_1 PF07690.16 gi|383320505|ref|YP_005381346.1| - 8.5e-40 136.7 59.4 8.5e-40 136.7 59.4 4.1 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|383320505|ref|YP_005381346.1| - 1.8e-08 33.7 24.8 1.7e-07 30.5 8.3 3.4 4 1 0 4 4 4 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|383320505|ref|YP_005381346.1| - 0.00074 18.0 3.2 0.00074 18.0 3.2 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector PadR PF03551.14 gi|383320506|ref|YP_005381347.1| - 3.2e-24 84.7 0.0 4.5e-24 84.2 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|383320506|ref|YP_005381347.1| - 1.3e-06 29.0 0.0 2e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Replication terminator protein DUF505 PF04458.12 gi|383320506|ref|YP_005381347.1| - 8.3e-06 24.5 0.1 9.7e-06 24.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) DUF4364 PF14277.6 gi|383320506|ref|YP_005381347.1| - 1.5e-05 24.8 0.0 2.1e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) Penicillinase_R PF03965.16 gi|383320506|ref|YP_005381347.1| - 0.00035 20.9 0.0 0.00041 20.7 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_34 PF13601.6 gi|383320506|ref|YP_005381347.1| - 0.0004 20.5 0.0 0.00058 20.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|383320506|ref|YP_005381347.1| - 0.00048 20.6 0.0 0.00077 19.9 0.0 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|383320506|ref|YP_005381347.1| - 0.00073 19.4 0.0 0.0016 18.3 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF3116 PF11313.8 gi|383320506|ref|YP_005381347.1| - 0.0016 18.3 0.5 0.0024 17.7 0.1 1.7 2 1 0 2 2 2 1 Protein of unknown function (DUF3116) DUF1495 PF07381.11 gi|383320506|ref|YP_005381347.1| - 0.0025 17.6 0.0 0.0068 16.2 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|383320506|ref|YP_005381347.1| - 0.0089 16.0 0.2 0.02 14.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix Ribosomal_S19e PF01090.19 gi|383320506|ref|YP_005381347.1| - 0.047 13.4 0.0 0.049 13.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S19e Mrr_N PF14338.6 gi|383320506|ref|YP_005381347.1| - 0.048 13.8 0.1 0.16 12.1 0.1 1.9 1 1 1 2 2 2 0 Mrr N-terminal domain MarR PF01047.22 gi|383320506|ref|YP_005381347.1| - 0.092 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 MarR family 12TM_1 PF09847.9 gi|383320507|ref|YP_005381348.1| - 0.00018 20.8 41.3 0.00031 20.0 41.3 1.4 1 1 0 1 1 1 1 Membrane protein of 12 TMs Prominin PF05478.11 gi|383320507|ref|YP_005381348.1| - 0.68 7.8 9.3 0.013 13.5 2.6 1.5 2 0 0 2 2 2 0 Prominin DUF4516 PF14990.6 gi|383320507|ref|YP_005381348.1| - 2 8.2 5.5 4.2 7.2 1.4 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4516) ABC_tran PF00005.27 gi|383320508|ref|YP_005381349.1| - 6.5e-29 101.2 0.0 1.2e-28 100.3 0.0 1.4 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|383320508|ref|YP_005381349.1| - 7.6e-13 48.9 0.9 2.6e-08 34.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|383320508|ref|YP_005381349.1| - 0.0013 18.5 0.0 0.73 9.5 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|383320508|ref|YP_005381349.1| - 0.0034 17.1 0.1 0.0063 16.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|383320508|ref|YP_005381349.1| - 0.0062 16.0 0.1 0.76 9.2 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|383320508|ref|YP_005381349.1| - 0.0065 16.8 0.1 0.79 10.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|383320508|ref|YP_005381349.1| - 0.02 15.3 0.0 0.036 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.15 gi|383320508|ref|YP_005381349.1| - 0.034 14.1 0.0 0.077 12.9 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain DUF2813 PF11398.8 gi|383320508|ref|YP_005381349.1| - 0.055 12.7 0.0 0.086 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|383320508|ref|YP_005381349.1| - 0.069 13.6 0.2 0.13 12.8 0.2 1.5 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|383320508|ref|YP_005381349.1| - 0.079 11.9 0.2 0.14 11.1 0.2 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_10 PF12846.7 gi|383320508|ref|YP_005381349.1| - 0.18 10.7 0.1 0.34 9.8 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain IGPD PF00475.18 gi|383320509|ref|YP_005381350.1| - 6.7e-62 208.0 2.2 8.3e-62 207.8 2.2 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Coagulin PF02035.15 gi|383320509|ref|YP_005381350.1| - 0.13 12.1 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Coagulin EamA PF00892.20 gi|383320510|ref|YP_005381351.1| - 4.7e-44 149.9 40.1 7.4e-23 81.2 11.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|383320510|ref|YP_005381351.1| - 6.1e-10 38.9 19.2 8.9e-05 22.0 6.3 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family SLC35F PF06027.12 gi|383320510|ref|YP_005381351.1| - 6.2e-08 32.5 17.0 7.8e-08 32.2 17.0 1.1 1 0 0 1 1 1 1 Solute carrier family 35 UAA PF08449.11 gi|383320510|ref|YP_005381351.1| - 0.01 15.1 6.0 0.01 15.1 6.0 2.8 1 1 1 2 2 2 0 UAA transporter family EamA PF00892.20 gi|383320511|ref|YP_005381352.1| - 9.2e-56 187.8 44.9 6.8e-30 104.0 18.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 gi|383320511|ref|YP_005381352.1| - 4.6e-10 39.5 16.5 1.3e-09 38.1 16.5 1.6 1 1 0 1 1 1 1 Solute carrier family 35 TPT PF03151.16 gi|383320511|ref|YP_005381352.1| - 1.6e-05 24.4 18.2 0.00018 20.9 7.2 2.0 1 1 1 2 2 2 2 Triose-phosphate Transporter family UAA PF08449.11 gi|383320511|ref|YP_005381352.1| - 0.044 13.0 18.0 0.19 10.9 6.0 2.4 2 0 0 2 2 2 0 UAA transporter family Pox_P21 PF05313.12 gi|383320511|ref|YP_005381352.1| - 1.9 8.0 17.7 0.063 12.8 7.3 2.2 2 0 0 2 2 2 0 Poxvirus P21 membrane protein Fasciclin PF02469.22 gi|383320512|ref|YP_005381353.1| - 1.2e-17 64.4 0.0 1.3e-17 64.2 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain Peptidase_MA_2 PF13485.6 gi|383320513|ref|YP_005381354.1| - 1.5e-13 51.0 0.0 3.2e-13 49.9 0.0 1.5 2 0 0 2 2 2 1 Peptidase MA superfamily CarboxypepD_reg PF13620.6 gi|383320513|ref|YP_005381354.1| - 2.6e-10 40.4 0.4 4.6e-10 39.6 0.4 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|383320513|ref|YP_005381354.1| - 0.0023 17.9 0.4 0.0066 16.4 0.4 1.7 1 1 0 1 1 1 1 CarboxypepD_reg-like domain ERCC3_RAD25_C PF16203.5 gi|383320513|ref|YP_005381354.1| - 0.0084 15.3 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Big_1 PF02369.16 gi|383320513|ref|YP_005381354.1| - 0.041 13.9 0.0 0.08 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) Glycophorin_A PF01102.18 gi|383320513|ref|YP_005381354.1| - 0.18 12.1 0.0 0.34 11.2 0.0 1.4 1 0 0 1 1 1 0 Glycophorin A Aldedh PF00171.22 gi|383320514|ref|YP_005381355.1| - 2.8e-168 560.2 0.0 3.1e-168 560.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|383320514|ref|YP_005381355.1| - 0.00094 18.7 0.0 0.0017 17.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1487) Peptidase_M24 PF00557.24 gi|383320515|ref|YP_005381356.1| - 1.4e-41 142.5 0.1 1.7e-41 142.2 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.24 gi|383320516|ref|YP_005381357.1| - 3.3e-50 170.7 0.1 4.1e-50 170.4 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|383320516|ref|YP_005381357.1| - 1.7e-07 32.0 0.0 3.1e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Mrr_cat PF04471.12 gi|383320516|ref|YP_005381357.1| - 0.23 11.5 1.2 4.5 7.3 0.0 3.2 3 1 0 3 3 3 0 Restriction endonuclease HTH_5 PF01022.20 gi|383320517|ref|YP_005381358.1| - 0.0011 18.7 0.0 0.0019 18.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF4897 PF16238.5 gi|383320517|ref|YP_005381358.1| - 0.014 15.3 0.0 0.067 13.0 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4897) MarR_2 PF12802.7 gi|383320517|ref|YP_005381358.1| - 0.027 14.4 0.0 0.069 13.1 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|383320517|ref|YP_005381358.1| - 0.053 13.3 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|383320517|ref|YP_005381358.1| - 0.067 13.1 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_46 PF15977.5 gi|383320517|ref|YP_005381358.1| - 0.12 12.4 0.2 0.22 11.6 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding Radical_SAM_C PF16199.5 gi|383320518|ref|YP_005381359.1| - 3.5e-27 94.2 0.1 6.4e-27 93.4 0.1 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|383320518|ref|YP_005381359.1| - 2.5e-24 86.5 0.0 1.4e-23 84.1 0.0 2.2 3 0 0 3 3 3 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|383320518|ref|YP_005381359.1| - 1.7e-09 38.0 0.3 4.1e-09 36.7 0.3 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|383320518|ref|YP_005381359.1| - 4.8e-07 29.8 0.0 1.1e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|383320518|ref|YP_005381359.1| - 0.0021 18.4 0.1 0.005 17.2 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3856 PF12968.7 gi|383320519|ref|YP_005381360.1| - 1.7e-06 28.1 10.0 0.00053 20.1 1.7 3.5 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) TPR_12 PF13424.6 gi|383320519|ref|YP_005381360.1| - 0.0027 17.9 28.7 1 9.7 0.1 6.3 4 2 1 5 5 5 2 Tetratricopeptide repeat Mtp PF03821.16 gi|383320519|ref|YP_005381360.1| - 0.031 13.9 0.8 0.058 13.0 0.8 1.4 1 0 0 1 1 1 0 Golgi 4-transmembrane spanning transporter PPR PF01535.20 gi|383320519|ref|YP_005381360.1| - 0.062 13.6 2.8 40 4.8 0.1 4.8 4 0 0 4 4 4 0 PPR repeat TPR_1 PF00515.28 gi|383320519|ref|YP_005381360.1| - 0.61 10.0 16.9 2.7 7.9 1.4 5.6 4 1 1 5 5 5 0 Tetratricopeptide repeat DUF2569 PF10754.9 gi|383320519|ref|YP_005381360.1| - 0.68 10.4 9.0 1.5 9.3 9.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) SNAP PF14938.6 gi|383320519|ref|YP_005381360.1| - 0.83 9.0 23.7 0.5 9.7 7.1 3.8 1 1 1 3 3 3 0 Soluble NSF attachment protein, SNAP DUF5113 PF17140.4 gi|383320519|ref|YP_005381360.1| - 0.86 9.4 10.9 7.7 6.3 0.1 4.4 5 0 0 5 5 5 0 Domain of unknown function (DUF5113) PGG PF13962.6 gi|383320519|ref|YP_005381360.1| - 3.2 7.6 11.5 1.1 9.1 7.3 2.4 2 1 0 2 2 2 0 Domain of unknown function MMR_HSR1_C PF08438.10 gi|383320520|ref|YP_005381361.1| - 1.1e-33 116.1 0.0 8.9e-33 113.2 0.0 2.1 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|383320520|ref|YP_005381361.1| - 8.8e-20 70.9 0.0 4.6e-19 68.6 0.0 2.0 1 1 1 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|383320520|ref|YP_005381361.1| - 3.7e-11 42.9 0.0 7.8e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|383320520|ref|YP_005381361.1| - 3e-08 33.3 0.0 2.9e-07 30.2 0.0 2.4 3 0 0 3 3 3 1 Ferrous iron transport protein B FAM72 PF14976.6 gi|383320520|ref|YP_005381361.1| - 0.051 13.7 0.3 0.1 12.7 0.3 1.4 1 0 0 1 1 1 0 FAM72 protein FKBP_C PF00254.28 gi|383320521|ref|YP_005381362.1| - 3.5e-13 49.7 0.1 8.5e-13 48.5 0.1 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase SspH PF08141.12 gi|383320521|ref|YP_005381362.1| - 0.097 12.8 0.1 0.23 11.6 0.1 1.7 1 0 0 1 1 1 0 Small acid-soluble spore protein H family Cyclase PF04199.13 gi|383320522|ref|YP_005381363.1| - 1e-22 80.8 0.0 1.3e-22 80.5 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase PfkB PF00294.24 gi|383320523|ref|YP_005381364.1| - 4.4e-54 183.8 0.0 5.3e-54 183.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|383320523|ref|YP_005381364.1| - 1.1e-06 28.3 0.0 5.9e-06 25.8 0.0 1.9 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase HATPase_c PF02518.26 gi|383320524|ref|YP_005381365.1| - 9.9e-22 77.6 0.0 1.9e-21 76.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|383320524|ref|YP_005381365.1| - 3.4e-08 33.7 0.1 3.3e-07 30.5 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|383320524|ref|YP_005381365.1| - 3.6e-05 24.0 0.0 0.0001 22.5 0.0 1.8 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|383320524|ref|YP_005381365.1| - 0.00048 20.1 0.0 0.00093 19.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|383320524|ref|YP_005381365.1| - 0.0052 16.8 0.0 0.012 15.6 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|383320524|ref|YP_005381365.1| - 0.022 14.8 0.0 0.064 13.3 0.0 1.8 1 0 0 1 1 1 0 PAS domain HATPase_c_3 PF13589.6 gi|383320524|ref|YP_005381365.1| - 0.059 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UbiA PF01040.18 gi|383320525|ref|YP_005381366.1| - 3.6e-12 46.1 19.3 3.9e-12 46.0 18.6 1.5 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF1192 PF06698.11 gi|383320526|ref|YP_005381367.1| - 0.012 15.6 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) AIM24 PF01987.17 gi|383320527|ref|YP_005381368.1| - 1e-33 116.9 0.0 1.2e-33 116.6 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Glyco_hydro_57 PF03065.15 gi|383320528|ref|YP_005381369.1| - 2.2e-61 207.9 0.0 4.4e-61 206.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Nif11 PF07862.11 gi|383320528|ref|YP_005381369.1| - 0.015 15.6 0.0 0.034 14.5 0.0 1.7 1 0 0 1 1 1 0 Nif11 domain Glycos_transf_1 PF00534.20 gi|383320529|ref|YP_005381370.1| - 8.6e-34 116.5 0.0 1.7e-33 115.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|383320529|ref|YP_005381370.1| - 3.2e-27 95.6 0.0 9.8e-27 94.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383320529|ref|YP_005381370.1| - 9.9e-22 77.7 0.6 2.4e-21 76.5 0.3 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.11 gi|383320529|ref|YP_005381370.1| - 1.6e-13 51.0 0.1 5e-09 36.2 0.1 2.6 2 1 1 3 3 3 2 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|383320529|ref|YP_005381370.1| - 1.3e-11 45.1 0.2 1.2e-10 42.1 0.0 2.2 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|383320529|ref|YP_005381370.1| - 0.0068 16.4 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|383320529|ref|YP_005381370.1| - 0.025 15.0 0.0 0.062 13.7 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 Thoc2 PF11732.8 gi|383320529|ref|YP_005381370.1| - 0.082 13.0 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Transcription- and export-related complex subunit Glycos_transf_1 PF00534.20 gi|383320530|ref|YP_005381371.1| - 1.2e-35 122.5 0.0 1.8e-35 122.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|383320530|ref|YP_005381371.1| - 9.3e-32 110.4 0.0 7.3e-31 107.5 0.0 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|383320530|ref|YP_005381371.1| - 4.8e-25 88.5 0.0 1e-24 87.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|383320530|ref|YP_005381371.1| - 1.1e-24 87.7 0.0 1.9e-24 86.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|383320530|ref|YP_005381371.1| - 1.3e-08 35.2 0.0 3.4e-08 33.8 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|383320530|ref|YP_005381371.1| - 8.8e-08 32.1 0.0 9.2e-07 28.8 0.0 2.4 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|383320530|ref|YP_005381371.1| - 1.7e-05 24.9 0.0 0.00013 22.0 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase 4-like Bmp PF02608.14 gi|383320530|ref|YP_005381371.1| - 0.0044 16.0 0.0 0.0067 15.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Glycogen_syn PF05693.13 gi|383320530|ref|YP_005381371.1| - 0.0066 15.1 0.3 0.017 13.7 0.1 1.7 2 0 0 2 2 2 1 Glycogen synthase LpxB PF02684.15 gi|383320530|ref|YP_005381371.1| - 0.099 11.5 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase GDE_C PF06202.14 gi|383320531|ref|YP_005381372.1| - 1.5e-84 284.2 0.0 2.3e-84 283.5 0.0 1.3 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|383320531|ref|YP_005381372.1| - 1.2e-24 86.9 0.0 1.8e-24 86.4 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Glyco_hydro_100 PF12899.7 gi|383320531|ref|YP_005381372.1| - 0.0015 17.3 0.0 0.071 11.8 0.0 2.2 2 0 0 2 2 2 2 Alkaline and neutral invertase Glyco_hydro_63 PF03200.16 gi|383320531|ref|YP_005381372.1| - 0.087 11.6 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 63 C-terminal domain Peptidase_C1 PF00112.23 gi|383320532|ref|YP_005381373.1| - 1.9e-14 54.3 0.0 2.4e-14 54.0 0.0 1.1 1 0 0 1 1 1 1 Papain family cysteine protease Peptidase_C39_2 PF13529.6 gi|383320532|ref|YP_005381373.1| - 0.057 14.0 0.0 0.1 13.1 0.0 1.4 1 0 0 1 1 1 0 Peptidase_C39 like family Proteasome PF00227.26 gi|383320533|ref|YP_005381374.1| - 1.3e-54 184.6 0.1 1.5e-54 184.4 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit KH_7 PF17214.3 gi|383320534|ref|YP_005381375.1| - 7.5e-30 102.7 0.5 1.9e-28 98.2 0.0 2.5 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|383320534|ref|YP_005381375.1| - 2.3e-25 89.0 0.0 7.9e-25 87.3 0.0 2.0 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.12 gi|383320534|ref|YP_005381375.1| - 8.9e-18 64.0 0.0 2.7e-17 62.4 0.0 1.9 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|383320534|ref|YP_005381375.1| - 1.6e-12 47.8 0.1 2.5e-11 44.0 0.1 2.7 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|383320534|ref|YP_005381375.1| - 2.5e-12 46.6 0.0 4.1e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|383320534|ref|YP_005381375.1| - 5.1e-10 39.2 0.0 1.7e-09 37.5 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|383320534|ref|YP_005381375.1| - 0.00017 21.5 0.0 0.00041 20.3 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|383320534|ref|YP_005381375.1| - 0.00022 21.0 0.2 0.0018 18.1 0.0 2.6 3 0 0 3 3 3 1 KH domain KH_4 PF13083.6 gi|383320534|ref|YP_005381375.1| - 0.006 16.4 0.1 0.014 15.3 0.1 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|383320534|ref|YP_005381375.1| - 0.0088 15.9 0.1 0.084 12.7 0.1 2.7 2 0 0 2 2 2 1 KH domain Peripla_BP_4 PF13407.6 gi|383320534|ref|YP_005381375.1| - 0.093 12.3 0.0 0.32 10.5 0.0 1.7 2 0 0 2 2 2 0 Periplasmic binding protein domain Pyridox_ox_2 PF12900.7 gi|383320535|ref|YP_005381376.1| - 7.4e-28 97.3 0.0 8.3e-28 97.1 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|383320535|ref|YP_005381376.1| - 3.3e-07 30.4 0.0 4.7e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF4439 PF14530.6 gi|383320535|ref|YP_005381376.1| - 0.029 15.1 0.2 0.036 14.8 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4439) PNP_UDP_1 PF01048.20 gi|383320536|ref|YP_005381377.1| - 2.8e-44 151.1 1.7 3.4e-44 150.9 1.7 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DHODB_Fe-S_bind PF10418.9 gi|383320536|ref|YP_005381377.1| - 0.00061 19.5 1.8 1.1 9.1 0.0 2.7 2 0 0 2 2 2 2 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Methyltransf_11 PF08241.12 gi|383320537|ref|YP_005381378.1| - 9.8e-23 80.6 0.1 1.7e-22 79.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383320537|ref|YP_005381378.1| - 2.7e-22 79.3 0.1 7e-22 78.0 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383320537|ref|YP_005381378.1| - 1.1e-19 70.8 0.0 2.3e-19 69.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|383320537|ref|YP_005381378.1| - 5.9e-15 55.2 0.0 1.3e-14 54.2 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|383320537|ref|YP_005381378.1| - 2.6e-12 47.3 0.0 4.6e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383320537|ref|YP_005381378.1| - 5.5e-10 39.3 0.0 1.5e-09 37.9 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|383320537|ref|YP_005381378.1| - 1.1e-08 34.8 0.0 1.9e-08 33.9 0.0 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|383320537|ref|YP_005381378.1| - 1.2e-06 28.5 0.0 2.1e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|383320537|ref|YP_005381378.1| - 5.8e-06 26.0 0.0 1.2e-05 25.0 0.0 1.4 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|383320537|ref|YP_005381378.1| - 1.8e-05 24.8 0.0 2.9e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|383320537|ref|YP_005381378.1| - 2.1e-05 24.5 0.0 0.00025 21.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|383320537|ref|YP_005381378.1| - 2.4e-05 24.3 0.6 0.00031 20.7 0.6 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase UPF0020 PF01170.18 gi|383320537|ref|YP_005381378.1| - 4.2e-05 23.3 0.0 8e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|383320537|ref|YP_005381378.1| - 8.9e-05 22.1 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|383320537|ref|YP_005381378.1| - 0.00026 20.7 0.0 0.00038 20.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.17 gi|383320537|ref|YP_005381378.1| - 0.00032 20.2 0.0 0.0011 18.4 0.0 1.9 2 1 0 2 2 2 1 Putative methyltransferase PrmA PF06325.13 gi|383320537|ref|YP_005381378.1| - 0.00064 19.2 0.0 0.0021 17.5 0.0 1.7 1 1 1 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) N6_N4_Mtase PF01555.18 gi|383320537|ref|YP_005381378.1| - 0.0029 17.4 0.0 0.073 12.8 0.0 2.2 2 0 0 2 2 2 1 DNA methylase DOT1 PF08123.13 gi|383320537|ref|YP_005381378.1| - 0.0033 17.0 0.0 0.0053 16.3 0.0 1.4 1 1 0 1 1 1 1 Histone methylation protein DOT1 Met_10 PF02475.16 gi|383320537|ref|YP_005381378.1| - 0.0044 16.8 0.0 0.0072 16.1 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|383320537|ref|YP_005381378.1| - 0.007 16.0 0.0 0.0095 15.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_9 PF08003.11 gi|383320537|ref|YP_005381378.1| - 0.0088 15.0 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_24 PF13578.6 gi|383320537|ref|YP_005381378.1| - 0.016 16.2 0.0 0.033 15.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Pterin_bind PF00809.22 gi|383320537|ref|YP_005381378.1| - 0.042 13.5 0.0 2.5 7.7 0.0 2.5 2 0 0 2 2 2 0 Pterin binding enzyme Methyltransf_29 PF03141.16 gi|383320537|ref|YP_005381378.1| - 0.056 12.0 0.1 0.071 11.6 0.1 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Pro_CA PF00484.19 gi|383320538|ref|YP_005381379.1| - 4e-31 108.4 0.0 5.6e-31 108.0 0.0 1.2 1 0 0 1 1 1 1 Carbonic anhydrase FrhB_FdhB_C PF04432.13 gi|383320539|ref|YP_005381380.1| - 3.7e-34 117.8 0.2 5.8e-34 117.2 0.2 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|383320539|ref|YP_005381380.1| - 3.7e-19 68.7 0.1 7.4e-19 67.7 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_9 PF13187.6 gi|383320539|ref|YP_005381380.1| - 1.4e-08 34.7 5.6 0.0031 17.6 0.1 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383320539|ref|YP_005381380.1| - 9.9e-08 32.3 5.8 2.5e-07 31.1 4.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383320539|ref|YP_005381380.1| - 1.1e-06 29.1 10.8 2.9e-06 27.8 7.5 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383320539|ref|YP_005381380.1| - 6.1e-06 26.7 11.1 3.2e-05 24.4 8.9 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383320539|ref|YP_005381380.1| - 3.2e-05 24.0 13.9 0.00065 19.8 11.2 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|383320539|ref|YP_005381380.1| - 7.3e-05 22.9 6.3 0.11 12.7 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|383320539|ref|YP_005381380.1| - 0.00017 21.3 1.1 0.48 10.2 0.0 2.6 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.27 gi|383320539|ref|YP_005381380.1| - 0.0019 17.9 20.3 0.035 13.9 2.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383320539|ref|YP_005381380.1| - 0.0021 18.0 20.7 0.033 14.3 3.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|383320539|ref|YP_005381380.1| - 0.0025 18.2 20.0 0.021 15.3 2.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|383320539|ref|YP_005381380.1| - 0.0043 18.0 14.2 0.013 16.4 8.9 2.9 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|383320539|ref|YP_005381380.1| - 0.28 11.4 18.2 0.054 13.6 2.5 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383320539|ref|YP_005381380.1| - 1.7 8.9 16.8 11 6.2 13.3 3.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|383320540|ref|YP_005381381.1| - 1.1e-105 354.1 0.0 1.3e-105 353.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|383320540|ref|YP_005381381.1| - 1.2e-32 112.2 0.0 2.4e-32 111.3 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|383320540|ref|YP_005381381.1| - 1.5e-22 79.3 1.2 3.1e-22 78.3 1.2 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 gi|383320540|ref|YP_005381381.1| - 0.035 14.3 0.3 0.11 12.6 0.1 2.0 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain Molybdopterin_N PF18364.1 gi|383320540|ref|YP_005381381.1| - 0.05 13.6 0.1 0.05 13.6 0.1 2.1 2 0 0 2 2 2 0 Molybdopterin oxidoreductase N-terminal domain Form_Nir_trans PF01226.17 gi|383320541|ref|YP_005381382.1| - 1.1e-86 290.0 29.2 1.3e-86 289.8 29.2 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter NiFeSe_Hases PF00374.19 gi|383320542|ref|YP_005381383.1| - 3.5e-31 108.7 2.2 2.8e-14 52.9 0.0 4.1 3 1 1 4 4 4 4 Nickel-dependent hydrogenase Complex1_49kDa PF00346.19 gi|383320542|ref|YP_005381383.1| - 0.043 12.9 0.1 0.11 11.5 0.1 1.6 2 0 0 2 2 2 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Ribonucleas_3_2 PF11469.8 gi|383320542|ref|YP_005381383.1| - 0.13 12.6 0.0 0.31 11.5 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease III HycI PF01750.18 gi|383320543|ref|YP_005381384.1| - 1.6e-32 112.0 0.0 2e-32 111.8 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Methyltransf_31 PF13847.6 gi|383320543|ref|YP_005381384.1| - 0.098 12.5 0.0 1.6 8.5 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Oxidored_q6 PF01058.22 gi|383320544|ref|YP_005381385.1| - 1.8e-30 105.4 0.2 1.8e-30 105.4 0.2 2.2 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|383320544|ref|YP_005381385.1| - 2.5e-11 42.9 16.3 8.5e-07 28.5 2.2 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383320544|ref|YP_005381385.1| - 7.6e-09 36.0 12.9 2.5e-05 24.8 14.2 3.4 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383320544|ref|YP_005381385.1| - 1.4e-06 29.1 11.5 0.0019 19.1 1.1 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|383320544|ref|YP_005381385.1| - 1.6e-06 28.2 10.5 1.6e-06 28.2 10.5 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383320544|ref|YP_005381385.1| - 2.8e-06 27.3 23.3 1.2e-05 25.3 12.9 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383320544|ref|YP_005381385.1| - 1.6e-05 24.7 19.0 0.0091 16.0 2.8 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383320544|ref|YP_005381385.1| - 1.8e-05 24.6 18.6 0.0015 18.5 2.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|383320544|ref|YP_005381385.1| - 0.0001 22.6 10.0 0.11 13.0 1.4 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383320544|ref|YP_005381385.1| - 0.00014 21.9 17.1 0.0034 17.5 12.3 3.5 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383320544|ref|YP_005381385.1| - 0.015 15.8 3.1 0.015 15.8 3.1 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|383320544|ref|YP_005381385.1| - 0.015 15.8 13.1 0.1 13.1 0.6 3.0 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|383320544|ref|YP_005381385.1| - 0.067 13.8 19.1 0.18 12.4 2.1 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|383320544|ref|YP_005381385.1| - 0.21 11.8 8.0 0.52 10.5 8.0 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|383320544|ref|YP_005381385.1| - 0.35 11.7 17.7 1.8 9.5 2.1 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383320544|ref|YP_005381385.1| - 2.8 8.7 13.2 0.48 11.2 1.3 3.0 2 1 1 3 3 2 0 4Fe-4S single cluster domain FrhB_FdhB_C PF04432.13 gi|383320545|ref|YP_005381386.1| - 5.8e-44 149.6 0.1 9e-44 149.0 0.1 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|383320545|ref|YP_005381386.1| - 2.6e-27 94.8 0.3 4.9e-27 93.9 0.3 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Nitro_FeMo-Co PF02579.17 gi|383320546|ref|YP_005381387.1| - 8e-23 80.6 0.1 9.2e-23 80.4 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF4894 PF16235.5 gi|383320547|ref|YP_005381388.1| - 0.096 13.0 0.0 0.11 12.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4894) PDZ_1 PF12812.7 gi|383320547|ref|YP_005381388.1| - 0.15 12.1 0.0 0.65 10.0 0.0 1.7 1 1 1 2 2 2 0 PDZ-like domain UDPG_MGDP_dh_N PF03721.14 gi|383320548|ref|YP_005381389.1| - 1.8e-67 226.5 0.1 3.1e-67 225.8 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|383320548|ref|YP_005381389.1| - 1.2e-37 128.0 0.0 2.2e-37 127.1 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|383320548|ref|YP_005381389.1| - 9.9e-32 109.5 0.1 2.5e-31 108.2 0.1 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|383320548|ref|YP_005381389.1| - 1.3e-05 25.7 0.1 0.017 15.7 0.0 3.5 4 1 0 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|383320548|ref|YP_005381389.1| - 0.00012 21.5 0.0 0.041 13.3 0.0 2.6 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|383320548|ref|YP_005381389.1| - 0.00019 21.4 0.0 0.0016 18.4 0.0 2.4 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|383320548|ref|YP_005381389.1| - 0.00051 19.7 0.0 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|383320548|ref|YP_005381389.1| - 0.0076 16.2 0.0 0.027 14.4 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|383320548|ref|YP_005381389.1| - 0.013 16.3 0.0 0.14 13.0 0.0 2.3 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.15 gi|383320548|ref|YP_005381389.1| - 0.053 13.7 0.0 4.1 7.5 0.0 2.5 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|383320548|ref|YP_005381389.1| - 0.056 12.7 0.0 0.12 11.6 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|383320548|ref|YP_005381389.1| - 0.062 12.6 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|383320548|ref|YP_005381389.1| - 0.062 13.6 1.0 0.2 11.9 0.0 2.4 3 0 0 3 3 3 0 TrkA-N domain DpaA_N PF16924.5 gi|383320548|ref|YP_005381389.1| - 0.065 13.3 1.8 0.34 11.0 0.0 2.8 4 0 0 4 4 4 0 Dipicolinate synthase subunit A N-terminal domain Pyr_redox PF00070.27 gi|383320548|ref|YP_005381389.1| - 0.068 13.7 0.2 0.23 12.1 0.0 2.0 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase KGG PF10685.9 gi|383320549|ref|YP_005381390.1| - 1.7e-06 28.1 6.0 0.028 14.7 0.1 3.3 2 1 1 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|383320549|ref|YP_005381390.1| - 0.044 14.2 3.9 0.26 11.8 3.0 1.9 1 1 1 2 2 2 0 Small hydrophilic plant seed protein SASP PF00269.20 gi|383320549|ref|YP_005381390.1| - 0.16 12.0 3.1 4 7.5 3.1 2.1 1 1 0 1 1 1 0 Small, acid-soluble spore proteins, alpha/beta type DNA_primase_lrg PF04104.14 gi|383320550|ref|YP_005381391.1| - 1.3e-33 116.5 0.0 2.7e-33 115.5 0.0 1.4 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit UBA_2 PF08587.11 gi|383320550|ref|YP_005381391.1| - 0.41 10.8 1.6 2.7 8.2 0.0 3.1 4 0 0 4 4 4 0 Ubiquitin associated domain (UBA) tRNA_anti-codon PF01336.25 gi|383320552|ref|YP_005381393.1| - 1.3e-08 34.7 0.0 3.5e-08 33.3 0.0 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.19 gi|383320552|ref|YP_005381393.1| - 6.6e-07 29.6 21.9 0.0012 19.2 3.7 2.4 1 1 0 2 2 2 2 DnaJ central domain DHH PF01368.20 gi|383320552|ref|YP_005381393.1| - 3.1e-06 27.4 0.3 9.1e-06 25.8 0.3 1.7 2 0 0 2 2 2 1 DHH family Anti-TRAP PF15777.5 gi|383320552|ref|YP_005381393.1| - 1.7e-05 24.7 20.3 0.0035 17.3 3.5 3.6 1 1 2 3 3 3 3 Tryptophan RNA-binding attenuator protein inhibitory protein tRNA_anti_2 PF13742.6 gi|383320552|ref|YP_005381393.1| - 0.00011 22.3 0.0 0.00082 19.5 0.0 2.2 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|383320552|ref|YP_005381393.1| - 0.0012 19.1 0.0 0.0037 17.6 0.0 1.8 1 0 0 1 1 1 1 S1 RNA binding domain DZR PF12773.7 gi|383320552|ref|YP_005381393.1| - 0.14 12.2 14.2 3.6 7.7 5.9 2.7 1 1 1 2 2 2 0 Double zinc ribbon S1_2 PF13509.6 gi|383320552|ref|YP_005381393.1| - 0.15 12.1 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 S1 domain DUF5351 PF17302.2 gi|383320552|ref|YP_005381393.1| - 1.4 9.1 18.3 1.4 9.2 3.4 3.9 3 1 0 3 3 3 0 Family of unknown function (DUF5351) HEAT_2 PF13646.6 gi|383320553|ref|YP_005381394.1| - 6e-44 148.3 17.5 5.6e-20 71.5 1.2 4.1 1 1 3 4 4 4 4 HEAT repeats HEAT PF02985.22 gi|383320553|ref|YP_005381394.1| - 9.8e-28 93.9 5.1 0.0058 16.8 0.0 7.5 8 0 0 8 8 7 7 HEAT repeat HEAT_PBS PF03130.16 gi|383320553|ref|YP_005381394.1| - 1.4e-18 65.6 17.4 1e-05 25.7 0.0 7.2 8 0 0 8 8 7 5 PBS lyase HEAT-like repeat Cnd1 PF12717.7 gi|383320553|ref|YP_005381394.1| - 7.9e-16 58.5 0.7 0.00041 20.4 0.1 5.0 1 1 4 5 5 5 5 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|383320553|ref|YP_005381394.1| - 3.4e-14 53.0 6.6 0.0052 17.3 0.0 7.0 5 1 2 7 7 7 4 HEAT-like repeat Cohesin_HEAT PF12765.7 gi|383320553|ref|YP_005381394.1| - 6.2e-11 42.4 2.6 0.068 13.5 0.0 5.2 6 0 0 6 6 5 4 HEAT repeat associated with sister chromatid cohesion Adaptin_N PF01602.20 gi|383320553|ref|YP_005381394.1| - 2.2e-09 36.5 1.4 2e-05 23.4 0.2 2.9 1 1 2 3 3 3 2 Adaptin N terminal region Arm PF00514.23 gi|383320553|ref|YP_005381394.1| - 7.1e-06 25.9 0.0 2.2 8.4 0.0 5.8 6 1 1 7 7 7 1 Armadillo/beta-catenin-like repeat CLASP_N PF12348.8 gi|383320553|ref|YP_005381394.1| - 2.5e-05 24.0 0.9 0.56 9.7 0.0 4.4 1 1 3 4 4 4 1 CLASP N terminal Aconitase_B_N PF11791.8 gi|383320553|ref|YP_005381394.1| - 3.4e-05 24.0 1.3 0.11 12.6 0.0 3.9 2 1 2 4 4 4 1 Aconitate B N-terminal domain Vac14_Fab1_bd PF12755.7 gi|383320553|ref|YP_005381394.1| - 0.0025 18.4 1.7 12 6.6 0.2 4.1 1 1 3 5 5 5 1 Vacuolar 14 Fab1-binding region RasGEF_N_2 PF14663.6 gi|383320553|ref|YP_005381394.1| - 0.0032 17.8 1.7 34 4.9 0.0 4.5 5 1 1 6 6 5 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain RTP1_C1 PF10363.9 gi|383320553|ref|YP_005381394.1| - 0.0061 16.7 0.1 0.55 10.4 0.0 3.3 2 1 2 4 4 3 1 Required for nuclear transport of RNA pol II C-terminus 1 DUF4042 PF13251.6 gi|383320553|ref|YP_005381394.1| - 0.081 12.6 0.4 52 3.5 0.0 3.8 3 2 3 6 6 6 0 Domain of unknown function (DUF4042) ALF PF03752.13 gi|383320553|ref|YP_005381394.1| - 0.2 11.7 1.9 12 6.0 0.0 3.3 4 0 0 4 4 3 0 Short repeats of unknown function Hemerythrin PF01814.23 gi|383320554|ref|YP_005381395.1| - 4.5e-10 40.2 7.7 1.5e-09 38.6 7.7 1.8 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain Takusan PF04822.13 gi|383320554|ref|YP_005381395.1| - 0.11 12.4 3.0 0.072 13.0 1.2 1.6 2 0 0 2 2 2 0 Takusan Sec34 PF04136.15 gi|383320555|ref|YP_005381396.1| - 0.00013 21.9 1.2 0.51 10.2 0.0 4.0 4 0 0 4 4 4 1 Sec34-like family Spc7 PF08317.11 gi|383320555|ref|YP_005381396.1| - 0.0087 15.0 0.6 0.12 11.3 0.1 2.4 2 1 1 3 3 3 1 Spc7 kinetochore protein Filament PF00038.21 gi|383320555|ref|YP_005381396.1| - 0.012 15.2 2.7 0.3 10.6 0.2 3.1 3 1 1 4 4 4 0 Intermediate filament protein TPR_MLP1_2 PF07926.12 gi|383320555|ref|YP_005381396.1| - 0.014 15.5 1.7 0.014 15.5 1.7 3.6 3 2 1 4 4 4 0 TPR/MLP1/MLP2-like protein HAUS6_N PF14661.6 gi|383320555|ref|YP_005381396.1| - 0.38 10.3 4.2 12 5.4 0.0 3.2 1 1 0 3 3 3 0 HAUS augmin-like complex subunit 6 N-terminus LPAM_1 PF08139.12 gi|383320555|ref|YP_005381396.1| - 0.4 11.3 1.9 0.87 10.2 1.9 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Mod_r PF07200.13 gi|383320555|ref|YP_005381396.1| - 0.51 10.4 3.8 1.8 8.6 0.1 3.3 3 1 1 4 4 4 0 Modifier of rudimentary (Mod(r)) protein PSII_Pbs27 PF13326.6 gi|383320555|ref|YP_005381396.1| - 0.63 10.3 13.0 2 8.7 0.1 3.6 2 1 1 3 3 3 0 Photosystem II Pbs27 Myb_DNA-bind_4 PF13837.6 gi|383320555|ref|YP_005381396.1| - 1 9.8 4.8 8.8 6.8 0.0 2.9 3 0 0 3 3 3 0 Myb/SANT-like DNA-binding domain BLOC1_2 PF10046.9 gi|383320555|ref|YP_005381396.1| - 2.8 8.3 12.6 16 5.9 0.1 5.1 4 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Response_reg PF00072.24 gi|383320556|ref|YP_005381397.1| - 1.9e-19 69.9 0.0 2.2e-19 69.7 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain RMMBL PF07521.12 gi|383320557|ref|YP_005381398.1| - 1.7e-12 47.0 0.1 1.9e-11 43.7 0.0 2.3 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Beta-Casp PF10996.8 gi|383320557|ref|YP_005381398.1| - 1.9e-11 44.2 0.0 5.6e-11 42.7 0.0 1.8 1 1 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.27 gi|383320557|ref|YP_005381398.1| - 3.8e-08 33.6 0.2 2.6e-05 24.3 0.0 2.4 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|383320557|ref|YP_005381398.1| - 7.9e-05 22.3 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|383320557|ref|YP_005381398.1| - 0.00032 20.2 0.0 0.00064 19.2 0.0 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|383320557|ref|YP_005381398.1| - 0.049 13.5 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain RNA_pol_Rpb5_C PF01191.19 gi|383320558|ref|YP_005381399.1| - 4.2e-33 113.1 0.1 4.6e-33 112.9 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.15 gi|383320559|ref|YP_005381400.1| - 1.6e-53 181.2 0.1 2e-53 181.0 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 gi|383320559|ref|YP_005381400.1| - 3.5e-26 91.2 0.0 6.3e-26 90.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|383320559|ref|YP_005381400.1| - 8.2e-26 90.8 0.4 1.3e-25 90.2 0.4 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 DnaI_N PF07319.11 gi|383320559|ref|YP_005381400.1| - 0.029 15.0 0.0 0.072 13.8 0.0 1.7 1 0 0 1 1 1 0 Primosomal protein DnaI N-terminus Baculo_PEP_N PF04512.12 gi|383320559|ref|YP_005381400.1| - 0.058 13.7 0.0 5.3 7.4 0.0 2.9 1 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, N terminus RNA_pol_Rpb2_6 PF00562.28 gi|383320560|ref|YP_005381401.1| - 3.5e-128 428.0 0.0 4.7e-128 427.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|383320560|ref|YP_005381401.1| - 2.8e-30 104.5 0.2 4.7e-30 103.8 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|383320560|ref|YP_005381401.1| - 1.8e-21 76.2 0.8 3.8e-21 75.1 0.8 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|383320560|ref|YP_005381401.1| - 1.3e-10 41.6 0.7 3.7e-10 40.2 0.7 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Zn-ribbon_8 PF09723.10 gi|383320560|ref|YP_005381401.1| - 0.00046 20.3 0.7 0.00088 19.3 0.7 1.4 1 0 0 1 1 1 1 Zinc ribbon domain Auto_anti-p27 PF06677.12 gi|383320560|ref|YP_005381401.1| - 0.0077 16.4 2.2 0.014 15.5 2.2 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|383320560|ref|YP_005381401.1| - 0.0086 15.5 1.2 0.95 9.0 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|383320560|ref|YP_005381401.1| - 0.012 15.7 0.2 0.026 14.7 0.2 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like OrfB_Zn_ribbon PF07282.11 gi|383320560|ref|YP_005381401.1| - 0.016 15.1 1.4 0.032 14.1 1.4 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain YflT PF11181.8 gi|383320560|ref|YP_005381401.1| - 0.019 15.4 0.2 4.4 7.9 0.1 2.6 2 0 0 2 2 2 0 Heat induced stress protein YflT SAP PF02037.27 gi|383320560|ref|YP_005381401.1| - 0.039 13.7 0.0 0.098 12.4 0.0 1.7 1 0 0 1 1 1 0 SAP domain LEM PF03020.15 gi|383320560|ref|YP_005381401.1| - 0.045 13.3 0.0 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 LEM domain zf-FPG_IleRS PF06827.14 gi|383320560|ref|YP_005381401.1| - 0.068 13.1 1.3 0.15 11.9 1.3 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS A2L_zn_ribbon PF08792.10 gi|383320560|ref|YP_005381401.1| - 0.082 12.6 1.1 2.6 7.9 0.2 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain Nudix_N_2 PF14803.6 gi|383320560|ref|YP_005381401.1| - 0.16 11.9 0.2 21 5.1 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal DUF1451 PF07295.11 gi|383320560|ref|YP_005381401.1| - 0.26 11.3 0.6 0.54 10.3 0.6 1.4 1 0 0 1 1 1 0 Zinc-ribbon containing domain zinc_ribbon_2 PF13240.6 gi|383320560|ref|YP_005381401.1| - 0.27 11.0 2.2 1.6 8.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|383320560|ref|YP_005381401.1| - 0.6 9.7 5.4 10 5.7 0.4 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.13 gi|383320560|ref|YP_005381401.1| - 0.68 9.7 2.7 1.3 8.8 2.7 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin_2 PF18073.1 gi|383320560|ref|YP_005381401.1| - 0.94 9.3 3.4 2.6 7.9 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-RING_7 PF02591.15 gi|383320560|ref|YP_005381401.1| - 1.1 9.5 3.7 0.56 10.4 0.2 2.3 1 1 0 2 2 2 0 C4-type zinc ribbon domain RNA_pol_Rpb1_1 PF04997.12 gi|383320561|ref|YP_005381402.1| - 2.2e-102 342.6 0.0 4.8e-102 341.5 0.0 1.5 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|383320561|ref|YP_005381402.1| - 1.2e-70 237.1 0.1 1.8e-70 236.5 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|383320561|ref|YP_005381402.1| - 2.1e-35 122.0 0.0 3.6e-35 121.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|383320561|ref|YP_005381402.1| - 4.5e-31 107.0 0.0 9.5e-31 105.9 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|383320561|ref|YP_005381402.1| - 2.1e-29 102.8 0.1 4.2e-29 101.8 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zinc_ribbon_2 PF13240.6 gi|383320561|ref|YP_005381402.1| - 4.4 7.2 7.7 1.5 8.7 0.4 3.3 3 0 0 3 3 3 0 zinc-ribbon domain RNA_pol_Rpb1_5 PF04998.17 gi|383320562|ref|YP_005381403.1| - 1.9e-52 178.4 3.9 2.7e-52 177.8 3.9 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Sigma70_ner PF04546.13 gi|383320562|ref|YP_005381403.1| - 0.009 15.9 0.2 0.018 14.9 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, non-essential region FTCD PF02971.14 gi|383320562|ref|YP_005381403.1| - 0.029 14.4 0.1 0.15 12.1 0.1 2.1 1 1 0 1 1 1 0 Formiminotransferase domain HTH_3 PF01381.22 gi|383320562|ref|YP_005381403.1| - 0.038 14.0 4.9 0.39 10.8 0.1 3.5 3 0 0 3 3 3 0 Helix-turn-helix DUF4777 PF16007.5 gi|383320562|ref|YP_005381403.1| - 0.041 14.1 3.0 0.093 13.0 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4777) NAC PF01849.18 gi|383320562|ref|YP_005381403.1| - 0.048 13.7 1.3 0.34 10.9 0.2 2.8 3 0 0 3 3 3 0 NAC domain Lip_prot_lig_C PF10437.9 gi|383320562|ref|YP_005381403.1| - 0.16 12.0 1.8 0.25 11.4 0.3 2.2 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus Ribosomal_L7Ae PF01248.26 gi|383320563|ref|YP_005381404.1| - 2e-17 62.7 0.0 2.7e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|383320564|ref|YP_005381405.1| - 3.3e-20 71.7 4.3 4.6e-13 48.8 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|383320564|ref|YP_005381405.1| - 3.6e-19 68.6 5.4 2.9e-17 62.5 0.7 2.2 2 0 0 2 2 2 2 NusA-like KH domain KH_4 PF13083.6 gi|383320564|ref|YP_005381405.1| - 1.2e-09 37.9 0.9 2.2e-05 24.3 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|383320564|ref|YP_005381405.1| - 1.5e-07 31.2 5.1 3.9e-05 23.4 0.9 2.3 1 1 1 2 2 2 2 KH domain ATP-synt PF00231.19 gi|383320564|ref|YP_005381405.1| - 0.0056 16.4 0.4 0.91 9.2 0.1 2.0 1 1 1 2 2 2 2 ATP synthase Ribosom_S12_S23 PF00164.25 gi|383320565|ref|YP_005381406.1| - 6.7e-49 164.3 0.1 8e-49 164.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|383320566|ref|YP_005381407.1| - 4.4e-40 136.8 3.9 5.3e-40 136.5 3.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.27 gi|383320567|ref|YP_005381408.1| - 1.3e-63 214.1 0.1 2.2e-63 213.3 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|383320567|ref|YP_005381408.1| - 6.8e-26 90.4 0.1 2.9e-25 88.4 0.0 2.1 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|383320567|ref|YP_005381408.1| - 2.8e-24 85.0 3.9 1.4e-23 82.7 1.1 2.5 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|383320567|ref|YP_005381408.1| - 4.6e-23 81.1 0.1 2.1e-22 79.0 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|383320567|ref|YP_005381408.1| - 1.9e-13 50.6 0.5 6e-13 49.0 0.5 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|383320567|ref|YP_005381408.1| - 0.0004 20.4 0.0 0.0013 18.8 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|383320567|ref|YP_005381408.1| - 0.11 12.1 0.1 0.33 10.5 0.0 1.8 2 0 0 2 2 2 0 Ras family GTP_EFTU PF00009.27 gi|383320568|ref|YP_005381409.1| - 1.5e-57 194.3 0.0 2.2e-57 193.8 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|383320568|ref|YP_005381409.1| - 5.8e-40 136.1 1.3 1.3e-39 135.0 0.4 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|383320568|ref|YP_005381409.1| - 2.6e-14 53.4 1.4 7.1e-14 52.0 1.4 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|383320568|ref|YP_005381409.1| - 1e-06 28.8 0.0 2.3e-05 24.4 0.0 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase Gtr1_RagA PF04670.12 gi|383320568|ref|YP_005381409.1| - 0.0034 16.8 0.0 0.11 11.8 0.0 2.1 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region FeoB_N PF02421.18 gi|383320568|ref|YP_005381409.1| - 0.0071 15.9 0.0 0.13 11.8 0.0 2.5 2 1 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|383320568|ref|YP_005381409.1| - 0.016 15.3 0.0 2.3 8.2 0.0 2.4 1 1 0 1 1 1 0 Dynamin family RsgA_GTPase PF03193.16 gi|383320568|ref|YP_005381409.1| - 0.028 14.3 0.0 0.72 9.7 0.0 2.5 3 0 0 3 3 3 0 RsgA GTPase GTP_EFTU_D4 PF14578.6 gi|383320568|ref|YP_005381409.1| - 0.081 12.8 1.0 0.24 11.3 1.0 1.8 1 0 0 1 1 1 0 Elongation factor Tu domain 4 Septin PF00735.18 gi|383320568|ref|YP_005381409.1| - 0.11 11.8 0.0 0.26 10.5 0.0 1.6 1 1 0 1 1 1 0 Septin Roc PF08477.13 gi|383320568|ref|YP_005381409.1| - 0.15 12.3 0.0 25 5.1 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Ribosomal_S10 PF00338.22 gi|383320569|ref|YP_005381410.1| - 2.3e-27 95.1 0.0 2.5e-27 95.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|383320569|ref|YP_005381410.1| - 0.0065 17.3 0.0 0.014 16.2 0.0 1.5 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain Aconitase_C PF00694.19 gi|383320570|ref|YP_005381411.1| - 3.2e-17 63.1 0.0 4.5e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.20 gi|383320571|ref|YP_005381412.1| - 1.3e-93 314.6 2.6 2.1e-60 205.1 0.0 2.3 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|383320571|ref|YP_005381412.1| - 0.00037 19.3 0.0 0.00055 18.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) PhoH PF02562.16 gi|383320571|ref|YP_005381412.1| - 0.13 11.7 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein Aminotran_1_2 PF00155.21 gi|383320573|ref|YP_005381414.1| - 3.5e-39 135.0 0.0 4.3e-39 134.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|383320573|ref|YP_005381414.1| - 3.2e-10 39.4 0.0 2.3e-09 36.6 0.0 2.0 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase ACT_7 PF13840.6 gi|383320574|ref|YP_005381415.1| - 1.4e-25 88.8 0.0 2.4e-25 88.1 0.0 1.4 1 0 0 1 1 1 1 ACT domain OrfB_Zn_ribbon PF07282.11 gi|383320575|ref|YP_005381416.1| - 4e-13 49.1 0.5 7.5e-13 48.2 0.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Filament PF00038.21 gi|383320575|ref|YP_005381416.1| - 0.012 15.2 0.1 0.02 14.5 0.1 1.3 1 0 0 1 1 1 0 Intermediate filament protein Fer4 PF00037.27 gi|383320576|ref|YP_005381417.1| - 4.8e-12 45.2 13.1 3.7e-06 26.5 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383320576|ref|YP_005381417.1| - 5.9e-10 38.8 14.5 6.8e-05 22.8 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383320576|ref|YP_005381417.1| - 2.7e-09 37.5 11.0 0.00015 22.2 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383320576|ref|YP_005381417.1| - 1.8e-08 34.0 12.3 0.00015 21.7 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|383320576|ref|YP_005381417.1| - 3.4e-08 33.5 24.1 1.4e-06 28.3 12.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383320576|ref|YP_005381417.1| - 2.3e-07 30.8 12.3 5e-07 29.7 12.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383320576|ref|YP_005381417.1| - 3.1e-06 27.2 24.0 4.6e-05 23.5 13.5 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383320576|ref|YP_005381417.1| - 4.2e-05 23.9 13.4 0.0028 18.0 1.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383320576|ref|YP_005381417.1| - 7.4e-05 23.4 11.7 0.0024 18.6 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|383320576|ref|YP_005381417.1| - 7.5e-05 23.6 12.0 0.017 16.1 2.3 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|383320576|ref|YP_005381417.1| - 7.5e-05 22.9 13.3 0.008 16.6 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|383320576|ref|YP_005381417.1| - 0.00017 21.7 8.8 0.0002 21.5 8.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383320576|ref|YP_005381417.1| - 0.00054 20.5 15.0 0.036 14.6 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|383320576|ref|YP_005381417.1| - 0.0019 18.7 13.9 0.063 13.8 3.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|383320576|ref|YP_005381417.1| - 0.0049 17.7 12.3 0.13 13.1 2.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|383320576|ref|YP_005381417.1| - 0.094 13.7 18.3 1.6 9.9 5.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain NCD3G PF07562.14 gi|383320576|ref|YP_005381417.1| - 0.29 11.1 8.3 1.6 8.8 0.4 2.4 1 1 1 2 2 2 0 Nine Cysteines Domain of family 3 GPCR Amidohydro_1 PF01979.20 gi|383320577|ref|YP_005381418.1| - 3.9e-48 164.5 0.1 5e-48 164.2 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|383320577|ref|YP_005381418.1| - 4.7e-06 26.3 0.1 0.015 14.8 0.0 2.6 2 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|383320577|ref|YP_005381418.1| - 0.00026 20.4 0.0 0.0004 19.8 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase GPP34 PF05719.11 gi|383320577|ref|YP_005381418.1| - 0.056 13.5 0.1 0.49 10.4 0.1 2.1 2 0 0 2 2 2 0 Golgi phosphoprotein 3 (GPP34) Diphthami_syn_2 PF01902.17 gi|383320578|ref|YP_005381419.1| - 1.8e-71 240.1 0.0 2e-71 240.0 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase Trimer_CC PF08954.11 gi|383320578|ref|YP_005381419.1| - 0.024 14.2 0.3 0.067 12.8 0.3 1.8 1 1 0 1 1 1 0 Trimerisation motif tRNA_Me_trans PF03054.16 gi|383320578|ref|YP_005381419.1| - 0.045 12.5 0.0 0.15 10.9 0.0 1.7 2 0 0 2 2 2 0 tRNA methyl transferase QueC PF06508.13 gi|383320578|ref|YP_005381419.1| - 0.13 11.8 0.0 0.28 10.6 0.0 1.6 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Calcyon PF06387.11 gi|383320579|ref|YP_005381420.1| - 0.93 9.5 2.8 2 8.3 0.2 2.4 2 0 0 2 2 2 0 D1 dopamine receptor-interacting protein (calcyon) RIO1 PF01163.22 gi|383320580|ref|YP_005381421.1| - 2.5e-09 37.0 0.0 4.6e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|383320580|ref|YP_005381421.1| - 9.9e-09 35.5 0.2 0.00011 22.2 0.2 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|383320580|ref|YP_005381421.1| - 4.5e-05 22.9 0.1 0.00057 19.3 0.1 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|383320580|ref|YP_005381421.1| - 0.00014 21.3 0.1 0.00031 20.2 0.1 1.5 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 gi|383320580|ref|YP_005381421.1| - 0.0016 18.1 0.1 0.0022 17.6 0.1 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.17 gi|383320580|ref|YP_005381421.1| - 0.0064 15.8 0.0 0.023 14.0 0.0 1.9 1 1 0 1 1 1 1 Protein tyrosine kinase EcKinase PF02958.20 gi|383320580|ref|YP_005381421.1| - 0.013 14.8 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase Peptidase_M22 PF00814.25 gi|383320581|ref|YP_005381422.1| - 5.9e-85 285.2 0.0 6.8e-85 285.0 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|383320581|ref|YP_005381422.1| - 0.014 15.0 0.0 0.025 14.2 0.0 1.4 1 1 0 1 1 1 0 Carbamoyltransferase N-terminus DUF5357 PF17310.2 gi|383320582|ref|YP_005381423.1| - 0.0002 20.1 3.3 0.00044 18.9 1.2 1.9 1 1 1 2 2 2 1 Family of unknown function (DUF5357) DUF4870 PF09685.10 gi|383320582|ref|YP_005381423.1| - 0.14 12.2 7.8 0.29 11.3 7.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4870) PepSY_TM_like_2 PF16357.5 gi|383320582|ref|YP_005381423.1| - 0.42 10.5 2.8 0.59 10.1 2.8 1.1 1 0 0 1 1 1 0 Putative PepSY_TM-like PAP2 PF01569.21 gi|383320582|ref|YP_005381423.1| - 1.8 8.3 7.7 0.34 10.7 4.1 1.6 1 1 1 2 2 2 0 PAP2 superfamily TerC PF03741.16 gi|383320582|ref|YP_005381423.1| - 2.2 8.0 7.5 2 8.1 6.6 1.4 1 1 0 1 1 1 0 Integral membrane protein TerC family Mem_trans PF03547.18 gi|383320583|ref|YP_005381424.1| - 4.2e-18 64.9 26.9 3.2e-11 42.3 11.6 2.0 1 1 1 2 2 2 2 Membrane transport protein CRS1_YhbY PF01985.21 gi|383320586|ref|YP_005381427.1| - 7.4e-21 74.1 2.3 8e-21 74.0 2.3 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_L10 PF00466.20 gi|383320586|ref|YP_005381427.1| - 0.00072 19.7 0.4 0.00098 19.2 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 E1-E2_ATPase PF00122.20 gi|383320587|ref|YP_005381428.1| - 1.5e-46 158.2 0.1 1.5e-46 158.2 0.1 3.6 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_N PF00690.26 gi|383320587|ref|YP_005381428.1| - 9.9e-19 66.8 0.0 4.9e-18 64.6 0.0 2.2 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Cation_ATPase_C PF00689.21 gi|383320587|ref|YP_005381428.1| - 1.4e-16 60.7 7.5 1.4e-16 60.7 7.5 2.0 2 1 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|383320587|ref|YP_005381428.1| - 4.3e-14 53.3 3.5 2.5e-13 50.8 3.5 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|383320587|ref|YP_005381428.1| - 7.7e-05 22.7 0.0 0.00015 21.8 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|383320587|ref|YP_005381428.1| - 0.011 15.5 0.2 0.023 14.4 0.2 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|383320587|ref|YP_005381428.1| - 0.16 12.4 0.0 0.41 11.0 0.0 1.8 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF2953 PF11167.8 gi|383320588|ref|YP_005381429.1| - 0.03 14.4 0.4 0.21 11.7 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) GPI2 PF06432.11 gi|383320588|ref|YP_005381429.1| - 0.073 12.5 8.6 0.053 13.0 2.8 2.0 1 1 1 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase COX8 PF02285.15 gi|383320588|ref|YP_005381429.1| - 0.13 12.2 0.2 0.13 12.2 0.2 2.8 3 0 0 3 3 3 0 Cytochrome oxidase c subunit VIII DUF1686 PF07937.11 gi|383320588|ref|YP_005381429.1| - 0.18 11.7 5.4 0.34 10.8 5.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1686) Abhydrolase_9_N PF15420.6 gi|383320590|ref|YP_005381431.1| - 0.17 11.9 7.1 0.19 11.7 7.1 1.1 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus Wzy_C PF04932.15 gi|383320591|ref|YP_005381432.1| - 0.00079 19.1 2.3 0.0014 18.3 2.3 1.5 1 1 0 1 1 1 1 O-Antigen ligase DUF2079 PF09852.9 gi|383320591|ref|YP_005381432.1| - 0.015 14.2 6.5 0.02 13.8 6.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) DUF2070 PF09843.9 gi|383320591|ref|YP_005381432.1| - 1.4 7.1 10.0 1.9 6.7 10.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) GerA PF03323.13 gi|383320592|ref|YP_005381433.1| - 0.063 11.7 0.3 0.73 8.2 0.0 2.1 2 1 0 2 2 2 0 Bacillus/Clostridium GerA spore germination protein SIS PF01380.22 gi|383320593|ref|YP_005381434.1| - 4.4e-10 39.5 0.0 0.00011 22.1 0.0 2.4 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.6 gi|383320593|ref|YP_005381434.1| - 0.021 14.9 0.0 7.6 6.6 0.0 3.1 2 1 1 3 3 3 0 SIS domain LPD38 PF18857.1 gi|383320593|ref|YP_005381434.1| - 0.13 12.4 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 Large polyvalent protein associated domain 38 Pribosyltran PF00156.27 gi|383320595|ref|YP_005381436.1| - 1.2e-21 76.8 0.3 1.8e-21 76.3 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|383320595|ref|YP_005381436.1| - 0.0004 19.9 0.8 0.0053 16.3 0.8 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.6 gi|383320595|ref|YP_005381436.1| - 0.001 18.5 0.1 0.0015 18.0 0.1 1.3 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_7 PF02796.15 gi|383320595|ref|YP_005381436.1| - 0.0043 17.1 0.0 0.01 15.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|383320595|ref|YP_005381436.1| - 0.023 14.5 0.1 0.053 13.3 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|383320595|ref|YP_005381436.1| - 0.037 13.7 0.2 0.25 11.0 0.1 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|383320595|ref|YP_005381436.1| - 0.038 13.5 0.4 0.13 11.8 0.1 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_10 PF04967.12 gi|383320595|ref|YP_005381436.1| - 0.038 13.8 0.1 0.07 12.9 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain MarR_2 PF12802.7 gi|383320595|ref|YP_005381436.1| - 0.048 13.6 0.1 0.089 12.7 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|383320595|ref|YP_005381436.1| - 0.049 13.6 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.6 gi|383320595|ref|YP_005381436.1| - 0.085 12.4 0.2 0.17 11.4 0.2 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PIN_6 PF17146.4 gi|383320596|ref|YP_005381437.1| - 1.3e-16 60.9 0.0 2.5e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|383320596|ref|YP_005381437.1| - 0.0018 17.7 0.1 0.0061 16.0 0.0 1.8 2 0 0 2 2 2 1 PINc domain ribonuclease ADK_lid PF05191.14 gi|383320596|ref|YP_005381437.1| - 0.0057 16.6 2.6 0.011 15.7 2.6 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid zinc-ribbons_6 PF07191.12 gi|383320596|ref|YP_005381437.1| - 0.068 13.2 0.3 0.1 12.6 0.3 1.2 1 0 0 1 1 1 0 zinc-ribbons PBP_like PF12727.7 gi|383320596|ref|YP_005381437.1| - 0.11 11.6 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 PBP superfamily domain Metallophos_2 PF12850.7 gi|383320598|ref|YP_005381439.1| - 6.8e-29 101.2 0.1 7.9e-29 101.0 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|383320598|ref|YP_005381439.1| - 3.5e-05 24.4 0.2 0.0066 17.0 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Helicase_C_2 PF13307.6 gi|383320599|ref|YP_005381440.1| - 4.2e-28 98.7 0.0 2.2e-27 96.3 0.0 2.0 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|383320599|ref|YP_005381440.1| - 8.5e-21 74.3 0.3 9.9e-20 70.9 0.3 2.2 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|383320599|ref|YP_005381440.1| - 7.3e-10 38.9 0.2 2.1e-06 27.6 0.0 3.3 3 0 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|383320599|ref|YP_005381440.1| - 1.6e-07 31.5 0.1 5.9e-06 26.4 0.1 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|383320599|ref|YP_005381440.1| - 5.7e-06 25.9 0.1 0.0069 15.9 0.1 2.4 2 0 0 2 2 2 2 PhoH-like protein HBB PF06777.11 gi|383320599|ref|YP_005381440.1| - 0.00022 20.9 0.2 0.001 18.8 0.0 2.3 2 1 0 2 2 2 1 Helical and beta-bridge domain Zot PF05707.12 gi|383320599|ref|YP_005381440.1| - 0.00044 19.9 0.1 0.16 11.6 0.0 3.1 3 0 0 3 3 3 1 Zonular occludens toxin (Zot) AAA_30 PF13604.6 gi|383320599|ref|YP_005381440.1| - 0.0061 16.3 0.0 0.024 14.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|383320599|ref|YP_005381440.1| - 0.011 15.1 0.0 0.026 13.9 0.0 1.6 1 0 0 1 1 1 0 KaiC PIF1 PF05970.14 gi|383320599|ref|YP_005381440.1| - 0.021 14.0 0.0 0.16 11.1 0.0 2.0 2 0 0 2 2 2 0 PIF1-like helicase DUF2075 PF09848.9 gi|383320599|ref|YP_005381440.1| - 0.064 12.5 0.1 2.3 7.4 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 gi|383320599|ref|YP_005381440.1| - 0.094 13.1 0.1 12 6.3 0.0 2.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|383320599|ref|YP_005381440.1| - 0.11 12.1 2.1 0.21 11.2 0.1 2.4 3 1 0 3 3 3 0 AAA domain MIP PF00230.20 gi|383320600|ref|YP_005381441.1| - 1.6e-48 165.4 22.7 1.8e-48 165.2 22.7 1.0 1 0 0 1 1 1 1 Major intrinsic protein NADH_dh_m_C1 PF15088.6 gi|383320600|ref|YP_005381441.1| - 0.071 12.7 1.1 0.34 10.6 0.1 2.5 2 0 0 2 2 2 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial Ribosomal_S3Ae PF01015.18 gi|383320601|ref|YP_005381442.1| - 4.2e-71 238.7 3.2 4.8e-71 238.5 3.2 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family XH PF03469.14 gi|383320602|ref|YP_005381443.1| - 0.051 13.5 0.1 0.077 12.9 0.1 1.2 1 0 0 1 1 1 0 XH domain PQ-loop PF04193.14 gi|383320603|ref|YP_005381444.1| - 1.8e-08 34.0 0.3 2.5e-08 33.5 0.1 1.4 1 1 0 1 1 1 1 PQ loop repeat MtN3_slv PF03083.16 gi|383320603|ref|YP_005381444.1| - 9e-08 32.1 0.9 9.6e-08 32.0 0.9 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange LAB_N PF07578.11 gi|383320603|ref|YP_005381444.1| - 0.00089 19.3 0.5 0.0011 19.0 0.5 1.2 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain Popeye PF04831.13 gi|383320603|ref|YP_005381444.1| - 0.14 12.4 1.5 0.15 12.2 1.5 1.1 1 0 0 1 1 1 0 Popeye protein conserved region DUF3040 PF11239.8 gi|383320603|ref|YP_005381444.1| - 1.4 9.3 5.2 0.6 10.4 2.8 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) Topoisom_bac PF01131.20 gi|383320605|ref|YP_005381446.1| - 8.6e-119 397.2 0.0 1e-118 396.9 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|383320605|ref|YP_005381446.1| - 3.7e-15 56.0 0.0 4.9e-14 52.4 0.0 2.7 3 0 0 3 3 3 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|383320605|ref|YP_005381446.1| - 2.5e-12 46.3 1.2 2.5e-12 46.3 1.2 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger LexA_DNA_bind PF01726.16 gi|383320605|ref|YP_005381446.1| - 0.0037 17.0 0.1 0.79 9.5 0.0 2.8 2 0 0 2 2 2 1 LexA DNA binding domain DNA_ligase_ZBD PF03119.16 gi|383320605|ref|YP_005381446.1| - 0.096 12.7 6.7 0.038 14.0 1.9 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|383320605|ref|YP_005381446.1| - 0.55 10.4 2.8 31 4.8 0.9 2.7 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|383320605|ref|YP_005381446.1| - 1.7 9.1 5.7 0.48 10.8 1.1 2.3 2 0 0 2 2 2 0 Restriction alleviation protein Lar KGG PF10685.9 gi|383320609|ref|YP_005381450.1| - 3.5e-08 33.4 7.7 0.007 16.6 1.2 3.5 3 0 0 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.17 gi|383320609|ref|YP_005381450.1| - 4.5e-08 33.5 15.1 4.1e-05 24.0 6.1 2.0 1 1 1 2 2 2 2 Small hydrophilic plant seed protein SASP PF00269.20 gi|383320609|ref|YP_005381450.1| - 0.026 14.5 10.7 1.1 9.3 0.4 3.0 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type Integrase_H2C2 PF17921.1 gi|383320609|ref|YP_005381450.1| - 0.03 14.4 0.1 3 8.0 0.0 2.2 2 0 0 2 2 2 0 Integrase zinc binding domain SUI1 PF01253.22 gi|383320610|ref|YP_005381451.1| - 2.1e-21 76.2 1.8 2.6e-21 75.9 1.8 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|383320610|ref|YP_005381451.1| - 3.8e-05 23.9 0.7 5.5e-05 23.4 0.7 1.2 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|383320610|ref|YP_005381451.1| - 0.0051 16.5 1.0 0.0069 16.1 1.0 1.2 1 0 0 1 1 1 1 DTW domain CxxCxxCC PF03692.15 gi|383320611|ref|YP_005381452.1| - 3.2e-09 37.3 5.7 4.3e-09 36.9 5.7 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain ThiS PF02597.20 gi|383320613|ref|YP_005381454.1| - 2.1e-06 28.3 0.1 2.4e-06 28.1 0.1 1.1 1 0 0 1 1 1 1 ThiS family SSXT PF05030.12 gi|383320614|ref|YP_005381455.1| - 0.038 13.6 0.0 0.045 13.4 0.0 1.1 1 0 0 1 1 1 0 SSXT protein (N-terminal region) Methyltransf_25 PF13649.6 gi|383320615|ref|YP_005381456.1| - 2.2e-18 66.8 0.0 5e-16 59.2 0.1 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383320615|ref|YP_005381456.1| - 1.9e-11 44.0 0.0 3.2e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383320615|ref|YP_005381456.1| - 4.1e-11 43.4 0.0 1.7e-10 41.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|383320615|ref|YP_005381456.1| - 5.3e-09 36.7 0.0 5.9e-08 33.4 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383320615|ref|YP_005381456.1| - 8.5e-07 29.0 0.0 5.3e-06 26.4 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|383320615|ref|YP_005381456.1| - 1.2e-06 28.0 0.1 4.6e-05 22.9 0.0 2.2 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|383320615|ref|YP_005381456.1| - 3.3e-06 26.7 0.0 6.3e-05 22.6 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|383320615|ref|YP_005381456.1| - 6.7e-05 22.5 0.0 0.0001 21.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase CMAS PF02353.20 gi|383320615|ref|YP_005381456.1| - 0.00033 20.1 0.0 0.00045 19.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.11 gi|383320615|ref|YP_005381456.1| - 0.00087 19.0 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PCMT PF01135.19 gi|383320615|ref|YP_005381456.1| - 0.0021 17.9 0.0 0.0048 16.7 0.0 1.5 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|383320615|ref|YP_005381456.1| - 0.0025 17.5 0.0 0.0064 16.1 0.0 1.6 2 0 0 2 2 2 1 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 gi|383320615|ref|YP_005381456.1| - 0.0027 17.0 0.0 0.0054 16.1 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase domain N6_N4_Mtase PF01555.18 gi|383320615|ref|YP_005381456.1| - 0.0029 17.4 0.0 0.0078 15.9 0.0 1.7 2 0 0 2 2 2 1 DNA methylase TehB PF03848.14 gi|383320615|ref|YP_005381456.1| - 0.003 17.0 0.0 0.0079 15.6 0.0 1.7 2 0 0 2 2 2 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|383320615|ref|YP_005381456.1| - 0.0064 16.5 0.0 0.0099 15.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|383320615|ref|YP_005381456.1| - 0.0066 16.1 0.4 0.04 13.6 0.0 2.1 1 1 1 2 2 2 1 Putative RNA methylase family UPF0020 PrmA PF06325.13 gi|383320615|ref|YP_005381456.1| - 0.015 14.7 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) AdoMet_MTase PF07757.13 gi|383320615|ref|YP_005381456.1| - 0.04 14.3 0.0 0.095 13.0 0.0 1.6 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Bin3 PF06859.12 gi|383320615|ref|YP_005381456.1| - 0.093 13.4 0.0 0.19 12.3 0.0 1.6 1 0 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) Asn_synthase PF00733.21 gi|383320617|ref|YP_005381458.1| - 4.4e-51 174.6 4.2 4.7e-28 98.9 0.2 2.1 1 1 1 2 2 2 2 Asparagine synthase GATase_7 PF13537.6 gi|383320617|ref|YP_005381458.1| - 2.4e-18 66.2 0.1 9.9e-17 61.0 0.1 2.9 2 1 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|383320617|ref|YP_005381458.1| - 3.8e-17 62.7 0.0 1.7e-16 60.6 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|383320617|ref|YP_005381458.1| - 0.007 15.8 0.0 0.014 14.8 0.0 1.5 1 0 0 1 1 1 1 Aluminium induced protein Glu-tRNAGln PF02686.15 gi|383320618|ref|YP_005381459.1| - 1.3e-23 83.1 0.1 1.6e-23 82.7 0.1 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.21 gi|383320619|ref|YP_005381460.1| - 3.1e-161 537.3 0.0 3.5e-161 537.2 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.15 gi|383320620|ref|YP_005381461.1| - 1.8e-100 335.9 0.0 2.3e-100 335.5 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|383320620|ref|YP_005381461.1| - 1.6e-39 135.2 0.0 2.3e-39 134.6 0.0 1.2 1 0 0 1 1 1 1 GatB domain Topoisom_bac PF01131.20 gi|383320621|ref|YP_005381462.1| - 1.4e-119 399.8 0.0 4.1e-119 398.3 0.0 1.7 2 0 0 2 2 2 1 DNA topoisomerase Toprim PF01751.22 gi|383320621|ref|YP_005381462.1| - 2.9e-17 62.8 0.4 7.1e-17 61.5 0.4 1.7 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|383320621|ref|YP_005381462.1| - 1.3e-14 53.7 6.8 1.7e-14 53.3 1.9 2.4 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger PTS_2-RNA PF01885.16 gi|383320622|ref|YP_005381463.1| - 1.3e-22 80.7 0.0 1.9e-22 80.2 0.0 1.1 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family RTC PF01137.21 gi|383320623|ref|YP_005381464.1| - 1.2e-80 269.9 0.0 1.3e-80 269.8 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|383320623|ref|YP_005381464.1| - 6.6e-12 45.9 0.1 1.5e-11 44.8 0.1 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain HTH_5 PF01022.20 gi|383320624|ref|YP_005381465.1| - 2.2e-08 33.8 0.0 7.8e-08 32.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|383320624|ref|YP_005381465.1| - 3e-05 24.0 0.0 5.6e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|383320624|ref|YP_005381465.1| - 0.00095 19.0 0.0 0.0027 17.5 0.0 1.7 2 0 0 2 2 2 1 MarR family PadR PF03551.14 gi|383320624|ref|YP_005381465.1| - 0.0039 17.1 0.0 0.013 15.5 0.0 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family DUF2250 PF10007.9 gi|383320624|ref|YP_005381465.1| - 0.0051 16.9 0.0 0.0089 16.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.22 gi|383320624|ref|YP_005381465.1| - 0.0086 16.0 0.0 0.023 14.6 0.0 1.7 1 0 0 1 1 1 1 MarR family Polysacc_synt_C PF14667.6 gi|383320624|ref|YP_005381465.1| - 0.01 15.9 14.3 0.014 15.4 14.3 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain HTH_11 PF08279.12 gi|383320624|ref|YP_005381465.1| - 0.019 14.9 0.0 0.06 13.3 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_AsnC-type PF13404.6 gi|383320624|ref|YP_005381465.1| - 0.057 13.3 0.0 0.18 11.7 0.0 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|383320624|ref|YP_005381465.1| - 0.059 12.9 0.0 0.18 11.4 0.0 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding GlnD_UR_UTase PF08335.11 gi|383320624|ref|YP_005381465.1| - 0.11 12.6 0.2 24 5.0 0.0 2.6 3 0 0 3 3 3 0 GlnD PII-uridylyltransferase ABC2_membrane_5 PF13346.6 gi|383320624|ref|YP_005381465.1| - 0.16 11.5 9.1 0.25 10.9 9.1 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2070 PF09843.9 gi|383320624|ref|YP_005381465.1| - 0.28 9.4 6.8 0.35 9.1 6.8 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) HTH_5 PF01022.20 gi|383320625|ref|YP_005381466.1| - 2.2e-18 65.9 0.2 3.8e-18 65.1 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|383320625|ref|YP_005381466.1| - 7.1e-09 35.6 0.0 1.1e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|383320625|ref|YP_005381466.1| - 0.0046 16.7 0.1 0.021 14.6 0.0 2.2 3 0 0 3 3 3 1 Homeodomain-like domain MarR_2 PF12802.7 gi|383320625|ref|YP_005381466.1| - 0.0054 16.6 0.0 0.0087 15.9 0.0 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|383320625|ref|YP_005381466.1| - 0.0057 16.5 0.0 0.0091 15.8 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_29 PF13551.6 gi|383320625|ref|YP_005381466.1| - 0.024 14.6 0.2 0.08 13.0 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn helix Radical_SAM_C PF16199.5 gi|383320625|ref|YP_005381466.1| - 0.046 13.7 0.0 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 Radical_SAM C-terminal domain DUF1945 PF09178.10 gi|383320625|ref|YP_005381466.1| - 0.065 13.4 0.0 12 6.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1945) HTH_34 PF13601.6 gi|383320625|ref|YP_005381466.1| - 0.099 12.8 0.1 0.18 12.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain E1-E2_ATPase PF00122.20 gi|383320626|ref|YP_005381467.1| - 4.5e-55 186.0 0.4 4.5e-55 186.0 0.4 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|383320626|ref|YP_005381467.1| - 4.8e-42 144.6 0.2 8.7e-42 143.8 0.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|383320626|ref|YP_005381467.1| - 1.4e-19 70.3 0.0 3.4e-10 40.2 0.0 2.7 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.7 gi|383320626|ref|YP_005381467.1| - 0.0013 19.1 0.0 0.0036 17.7 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|383320626|ref|YP_005381467.1| - 0.0039 17.0 1.3 0.026 14.3 1.5 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Tox-PL-2 PF15643.6 gi|383320626|ref|YP_005381467.1| - 0.42 10.8 1.6 5.6 7.2 0.1 2.6 1 1 1 2 2 2 0 Papain fold toxin 2 zf-LYAR PF08790.11 gi|383320626|ref|YP_005381467.1| - 0.49 10.3 1.6 8.7 6.3 0.2 2.3 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger zf-dskA_traR PF01258.17 gi|383320626|ref|YP_005381467.1| - 2.9 7.9 5.6 33 4.5 0.1 3.5 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger MTH865 PF07747.11 gi|383320627|ref|YP_005381468.1| - 1e-29 102.1 0.2 1.1e-29 102.0 0.2 1.0 1 0 0 1 1 1 1 MTH865-like family HTH_5 PF01022.20 gi|383320628|ref|YP_005381469.1| - 3.7e-09 36.3 0.3 1.6e-08 34.2 0.0 2.2 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|383320628|ref|YP_005381469.1| - 2.1e-08 34.1 0.0 9.3e-08 32.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|383320628|ref|YP_005381469.1| - 0.00092 19.2 0.6 0.0044 17.0 0.8 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|383320628|ref|YP_005381469.1| - 0.0033 17.0 0.0 0.0092 15.5 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|383320628|ref|YP_005381469.1| - 0.015 15.5 0.2 0.05 13.8 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain GerPC PF10737.9 gi|383320628|ref|YP_005381469.1| - 0.023 14.8 0.6 0.039 14.0 0.6 1.4 1 0 0 1 1 1 0 Spore germination protein GerPC Rio2_N PF09202.11 gi|383320628|ref|YP_005381469.1| - 0.034 14.4 0.3 0.096 12.9 0.3 1.8 1 0 0 1 1 1 0 Rio2, N-terminal KELK PF15796.5 gi|383320628|ref|YP_005381469.1| - 0.082 13.4 1.1 0.082 13.4 1.1 1.9 2 0 0 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase p25-alpha PF05517.12 gi|383320628|ref|YP_005381469.1| - 0.092 12.9 1.4 0.18 11.9 0.1 1.9 2 0 0 2 2 2 0 p25-alpha APG6_N PF17675.1 gi|383320628|ref|YP_005381469.1| - 0.15 12.6 7.1 0.99 9.9 1.2 2.4 2 1 0 2 2 2 0 Apg6 coiled-coil region DUF496 PF04363.12 gi|383320628|ref|YP_005381469.1| - 0.18 11.8 4.4 0.18 11.8 1.6 2.4 2 2 0 2 2 2 0 Protein of unknown function (DUF496) YtxH PF12732.7 gi|383320628|ref|YP_005381469.1| - 0.39 11.3 1.8 2.4 8.8 0.3 2.4 2 0 0 2 2 2 0 YtxH-like protein Osmo_CC PF08946.10 gi|383320628|ref|YP_005381469.1| - 1.3 9.3 3.7 5.2 7.4 0.9 2.6 3 0 0 3 3 2 0 Osmosensory transporter coiled coil CENP-H PF05837.12 gi|383320628|ref|YP_005381469.1| - 3.5 8.1 6.4 4.4 7.7 1.0 2.6 1 1 1 3 3 3 0 Centromere protein H (CENP-H) Cupredoxin_1 PF13473.6 gi|383320629|ref|YP_005381470.1| - 2.2e-15 56.6 0.0 2.7e-15 56.4 0.0 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|383320629|ref|YP_005381470.1| - 7.9e-11 42.3 1.1 2.2e-05 24.8 0.1 2.1 1 1 1 2 2 2 2 Copper binding proteins, plastocyanin/azurin family PMSR PF01625.21 gi|383320631|ref|YP_005381472.1| - 1.4e-61 207.2 0.5 1.9e-61 206.7 0.5 1.2 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.18 gi|383320631|ref|YP_005381472.1| - 7.8e-48 161.6 0.0 1.4e-47 160.8 0.0 1.4 1 0 0 1 1 1 1 SelR domain GTP_EFTU PF00009.27 gi|383320632|ref|YP_005381473.1| - 1.3e-32 112.9 0.1 2e-32 112.3 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|383320632|ref|YP_005381473.1| - 2.8e-11 43.6 0.4 9.1e-11 42.0 0.4 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|383320632|ref|YP_005381473.1| - 1.4e-07 31.8 0.0 3.5e-07 30.5 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain AlbA_2 PF04326.14 gi|383320632|ref|YP_005381473.1| - 0.0014 18.9 0.1 0.0042 17.4 0.1 1.8 1 0 0 1 1 1 1 Putative DNA-binding domain MMR_HSR1 PF01926.23 gi|383320632|ref|YP_005381473.1| - 0.0043 17.1 0.0 0.027 14.5 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|383320632|ref|YP_005381473.1| - 0.0061 16.5 0.4 0.88 9.5 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase ATP_bind_1 PF03029.17 gi|383320632|ref|YP_005381473.1| - 0.028 14.2 0.2 0.46 10.2 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein GTP_EFTU_D4 PF14578.6 gi|383320632|ref|YP_005381473.1| - 0.83 9.6 5.5 1.3 9.0 2.9 2.7 2 1 0 2 2 2 0 Elongation factor Tu domain 4 PRD1_DD PF11087.8 gi|383320633|ref|YP_005381474.1| - 0.011 15.4 0.3 0.017 14.8 0.3 1.3 1 0 0 1 1 1 0 PRD1 phage membrane DNA delivery DUF2012 PF09430.10 gi|383320633|ref|YP_005381474.1| - 0.057 13.5 0.0 0.08 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) Nop10p PF04135.12 gi|383320633|ref|YP_005381474.1| - 0.065 13.3 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family NUDIX PF00293.28 gi|383320634|ref|YP_005381475.1| - 1.4e-20 73.7 0.0 1.6e-20 73.5 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|383320634|ref|YP_005381475.1| - 1.4e-05 25.0 0.0 2e-05 24.5 0.0 1.3 1 1 0 1 1 1 1 NUDIX domain motB PF17613.2 gi|383320634|ref|YP_005381475.1| - 0.089 12.7 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Modifier of transcription YqaJ PF09588.10 gi|383320634|ref|YP_005381475.1| - 0.15 12.2 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 YqaJ-like viral recombinase domain MC1 PF05854.11 gi|383320635|ref|YP_005381476.1| - 1.8e-30 105.0 0.5 2.6e-30 104.5 0.5 1.2 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Methyltransf_25 PF13649.6 gi|383320636|ref|YP_005381477.1| - 0.00076 20.1 0.0 0.0016 19.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Glyco_hydro_67N PF03648.14 gi|383320636|ref|YP_005381477.1| - 0.014 15.6 0.0 0.056 13.7 0.0 1.9 2 0 0 2 2 2 0 Glycosyl hydrolase family 67 N-terminus CCG PF02754.16 gi|383320636|ref|YP_005381477.1| - 0.015 15.5 0.1 0.039 14.2 0.1 1.7 1 0 0 1 1 1 0 Cysteine-rich domain Methyltransf_11 PF08241.12 gi|383320636|ref|YP_005381477.1| - 0.095 13.4 0.1 0.29 11.8 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383320636|ref|YP_005381477.1| - 0.11 12.4 0.0 0.24 11.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain ADD_DNMT3 PF17980.1 gi|383320636|ref|YP_005381477.1| - 0.12 12.4 2.0 0.19 11.8 0.4 2.0 2 0 0 2 2 2 0 Cysteine rich ADD domain in DNMT3 BrnA_antitoxin PF14384.6 gi|383320637|ref|YP_005381478.1| - 0.046 14.2 0.2 0.15 12.6 0.1 2.0 2 0 0 2 2 2 0 BrnA antitoxin of type II toxin-antitoxin system MutS_IV PF05190.18 gi|383320637|ref|YP_005381478.1| - 0.17 12.3 0.5 0.58 10.5 0.2 2.1 2 1 0 2 2 2 0 MutS family domain IV Metallophos PF00149.28 gi|383320638|ref|YP_005381479.1| - 2.1e-13 51.3 0.0 3.4e-13 50.6 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|383320638|ref|YP_005381479.1| - 1.3e-08 35.2 0.4 3e-07 30.8 0.4 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|383320638|ref|YP_005381479.1| - 2.2e-06 27.2 0.0 0.045 13.1 0.0 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily DUF521 PF04412.13 gi|383320638|ref|YP_005381479.1| - 0.056 12.2 0.1 0.13 11.0 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF521) DUF2124 PF09897.9 gi|383320638|ref|YP_005381479.1| - 0.08 12.8 0.3 7.1 6.5 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2124) NAD_binding_10 PF13460.6 gi|383320638|ref|YP_005381479.1| - 0.081 12.8 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 NAD(P)H-binding MazG PF03819.17 gi|383320638|ref|YP_005381479.1| - 0.17 12.1 0.7 0.39 10.9 0.7 1.5 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain DUF2204 PF09970.9 gi|383320639|ref|YP_005381480.1| - 2e-26 92.7 0.0 2.4e-26 92.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_5 PF14907.6 gi|383320639|ref|YP_005381480.1| - 3.8e-10 39.8 0.0 5.4e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase AMP-binding PF00501.28 gi|383320640|ref|YP_005381481.1| - 1.1e-99 333.9 0.0 1.4e-99 333.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|383320640|ref|YP_005381481.1| - 4.8e-24 85.1 0.0 1.1e-23 84.0 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Methyltransf_25 PF13649.6 gi|383320641|ref|YP_005381482.1| - 3.6e-17 62.9 0.1 1.3e-16 61.0 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383320641|ref|YP_005381482.1| - 3e-12 47.0 0.1 6.8e-12 45.9 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383320641|ref|YP_005381482.1| - 5.6e-12 45.7 0.0 1.6e-11 44.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383320641|ref|YP_005381482.1| - 1.1e-11 44.8 0.0 1.9e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|383320641|ref|YP_005381482.1| - 3e-07 30.0 0.0 4.3e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|383320641|ref|YP_005381482.1| - 3.7e-07 30.8 0.0 6.9e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|383320641|ref|YP_005381482.1| - 8.1e-05 22.2 0.0 0.00013 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|383320641|ref|YP_005381482.1| - 0.00052 19.4 0.0 0.00068 19.0 0.0 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|383320641|ref|YP_005381482.1| - 0.00065 18.8 0.0 0.00098 18.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|383320641|ref|YP_005381482.1| - 0.0025 17.6 0.0 0.0041 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|383320641|ref|YP_005381482.1| - 0.0043 17.0 0.0 0.011 15.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 gi|383320641|ref|YP_005381482.1| - 0.0056 16.4 0.0 0.0067 16.2 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein DUF938 PF06080.12 gi|383320641|ref|YP_005381482.1| - 0.0093 15.8 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF938) PrmA PF06325.13 gi|383320641|ref|YP_005381482.1| - 0.015 14.7 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.18 gi|383320641|ref|YP_005381482.1| - 0.027 14.2 0.0 0.049 13.3 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 NodS PF05401.11 gi|383320641|ref|YP_005381482.1| - 0.12 11.9 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) DNA_ligase_A_M PF01068.21 gi|383320642|ref|YP_005381483.1| - 6.8e-60 202.2 0.0 1.5e-59 201.1 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|383320642|ref|YP_005381483.1| - 8.9e-34 117.3 0.6 4.1e-33 115.2 0.2 2.3 2 1 1 3 3 3 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|383320642|ref|YP_005381483.1| - 4.5e-19 68.9 0.0 1.1e-18 67.6 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.6 gi|383320642|ref|YP_005381483.1| - 0.00012 22.0 0.0 0.00028 20.9 0.0 1.7 1 0 0 1 1 1 1 DNA ligase OB-like domain SH3_15 PF18346.1 gi|383320642|ref|YP_005381483.1| - 0.049 14.0 0.0 0.56 10.6 0.0 2.6 3 0 0 3 3 3 0 Mind bomb SH3 repeat domain TPR_12 PF13424.6 gi|383320643|ref|YP_005381484.1| - 0.0001 22.5 1.3 0.00033 20.9 0.1 2.6 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|383320643|ref|YP_005381484.1| - 0.00013 21.8 2.2 0.43 10.8 0.0 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|383320643|ref|YP_005381484.1| - 0.0036 17.1 0.2 0.075 12.9 0.0 3.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|383320643|ref|YP_005381484.1| - 0.0037 17.1 0.2 0.45 10.5 0.0 3.5 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|383320643|ref|YP_005381484.1| - 0.04 14.6 3.6 0.25 12.0 0.1 3.6 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|383320643|ref|YP_005381484.1| - 0.054 13.7 0.5 1.3 9.5 0.1 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat Usp PF00582.26 gi|383320644|ref|YP_005381485.1| - 1.2e-39 136.0 0.7 3.4e-20 73.0 0.2 3.1 2 1 0 2 2 2 2 Universal stress protein family AA_permease_2 PF13520.6 gi|383320645|ref|YP_005381486.1| - 5.9e-39 134.1 46.7 8.2e-39 133.6 46.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|383320645|ref|YP_005381486.1| - 2.7e-30 105.4 39.4 4.3e-30 104.7 39.4 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|383320645|ref|YP_005381486.1| - 0.016 15.3 4.9 0.016 15.3 4.9 4.4 6 0 0 6 6 6 0 C-terminus of AA_permease Fer4 PF00037.27 gi|383320646|ref|YP_005381487.1| - 9.4e-21 72.7 32.2 4.4e-09 35.8 1.4 5.0 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383320646|ref|YP_005381487.1| - 9.8e-18 64.5 23.0 4.8e-13 49.5 8.6 3.2 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|383320646|ref|YP_005381487.1| - 6.4e-17 60.8 30.0 1e-06 28.5 1.9 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|383320646|ref|YP_005381487.1| - 1.3e-16 60.4 55.1 1e-08 35.2 13.4 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383320646|ref|YP_005381487.1| - 1.6e-14 53.7 48.2 3.1e-08 33.6 10.2 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383320646|ref|YP_005381487.1| - 2.1e-14 53.4 38.7 1.5e-07 31.4 8.9 2.6 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383320646|ref|YP_005381487.1| - 4.6e-12 45.3 29.6 1.9e-05 24.5 1.7 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|383320646|ref|YP_005381487.1| - 1.7e-11 44.9 26.6 2.3e-05 25.3 0.4 4.1 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|383320646|ref|YP_005381487.1| - 6.2e-10 38.8 34.7 0.00066 20.0 1.4 4.3 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|383320646|ref|YP_005381487.1| - 1.7e-09 37.9 30.3 1e-06 29.1 10.6 3.4 1 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|383320646|ref|YP_005381487.1| - 8.8e-08 32.9 20.0 0.0022 18.8 0.5 4.0 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|383320646|ref|YP_005381487.1| - 4.2e-07 30.0 12.8 4.2e-07 30.0 12.8 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|383320646|ref|YP_005381487.1| - 4.5e-06 27.2 41.1 0.0064 17.3 4.8 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|383320646|ref|YP_005381487.1| - 7.4e-06 26.4 33.0 0.0027 18.2 13.9 3.9 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383320646|ref|YP_005381487.1| - 0.0092 16.5 30.5 0.016 15.7 0.8 4.0 3 1 0 3 3 3 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|383320646|ref|YP_005381487.1| - 0.012 16.3 0.8 0.012 16.3 0.8 4.3 3 1 0 3 3 2 0 4Fe-4S single cluster domain Chromo_shadow PF01393.19 gi|383320646|ref|YP_005381487.1| - 0.083 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Chromo shadow domain Fer4_18 PF13746.6 gi|383320646|ref|YP_005381487.1| - 0.28 11.4 29.2 0.29 11.3 1.7 4.0 1 1 2 3 3 3 0 4Fe-4S dicluster domain AFOR_C PF01314.18 gi|383320647|ref|YP_005381488.1| - 2.4e-129 431.7 0.5 3.1e-129 431.3 0.5 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|383320647|ref|YP_005381488.1| - 3.7e-77 258.7 0.0 6.2e-77 257.9 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Glutaredoxin PF00462.24 gi|383320648|ref|YP_005381489.1| - 3.8e-17 62.3 0.2 4.4e-17 62.0 0.2 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|383320648|ref|YP_005381489.1| - 5.6e-07 29.5 0.2 7e-07 29.2 0.2 1.1 1 0 0 1 1 1 1 Thioredoxin domain GST_N_3 PF13417.6 gi|383320648|ref|YP_005381489.1| - 4.2e-05 23.9 0.0 5.1e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.6 gi|383320648|ref|YP_005381489.1| - 0.0002 21.8 0.5 0.0031 17.9 0.5 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|383320648|ref|YP_005381489.1| - 0.00038 20.7 0.4 0.086 13.0 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin DUF836 PF05768.14 gi|383320648|ref|YP_005381489.1| - 0.0005 20.4 0.0 0.00054 20.3 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N PF02798.20 gi|383320648|ref|YP_005381489.1| - 0.055 13.8 0.0 0.062 13.6 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Indigoidine_A PF04227.12 gi|383320648|ref|YP_005381489.1| - 0.081 12.3 0.0 0.09 12.1 0.0 1.1 1 0 0 1 1 1 0 Indigoidine synthase A like protein ArsC PF03960.15 gi|383320648|ref|YP_005381489.1| - 0.18 11.9 0.1 0.51 10.4 0.1 1.8 1 1 0 1 1 1 0 ArsC family Pyr_redox_2 PF07992.14 gi|383320649|ref|YP_005381490.1| - 4.4e-40 137.7 7.1 5.4e-40 137.4 7.1 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|383320649|ref|YP_005381490.1| - 1.9e-25 89.7 1.5 1e-18 67.7 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|383320649|ref|YP_005381490.1| - 1.7e-09 38.1 6.2 1.3e-06 28.8 1.0 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|383320649|ref|YP_005381490.1| - 2.7e-09 36.6 9.6 8.9e-05 21.7 1.0 3.7 3 1 1 4 4 4 3 Glucose inhibited division protein A HI0933_like PF03486.14 gi|383320649|ref|YP_005381490.1| - 3.9e-08 32.4 5.2 7.3e-05 21.6 0.6 2.7 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|383320649|ref|YP_005381490.1| - 2e-06 27.1 8.3 7.2e-06 25.3 0.9 3.0 2 1 1 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|383320649|ref|YP_005381490.1| - 3.1e-06 26.8 1.7 3.1e-06 26.8 1.7 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|383320649|ref|YP_005381490.1| - 1.2e-05 24.6 1.1 0.0016 17.7 0.1 2.5 2 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|383320649|ref|YP_005381490.1| - 4e-05 23.7 0.4 4e-05 23.7 0.4 2.1 3 0 0 3 3 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|383320649|ref|YP_005381490.1| - 4.7e-05 22.6 1.7 0.063 12.3 0.4 3.1 2 1 1 3 3 3 2 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|383320649|ref|YP_005381490.1| - 0.00024 21.1 2.2 0.0073 16.3 0.0 2.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding DAO PF01266.24 gi|383320649|ref|YP_005381490.1| - 0.00027 20.6 13.5 0.007 16.0 0.0 3.0 3 1 1 4 4 4 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|383320649|ref|YP_005381490.1| - 0.00059 19.1 0.3 0.00059 19.1 0.3 2.7 2 1 1 3 3 3 1 Thi4 family Amino_oxidase PF01593.24 gi|383320649|ref|YP_005381490.1| - 0.065 12.5 0.9 0.19 10.9 0.0 2.0 2 1 0 3 3 3 0 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|383320649|ref|YP_005381490.1| - 0.12 12.9 1.8 1.2 9.6 0.2 2.4 2 1 0 2 2 2 0 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|383320649|ref|YP_005381490.1| - 0.79 8.9 5.3 0.083 12.1 0.9 1.5 2 0 0 2 2 2 0 FAD binding domain DNA_topoisoIV PF00521.20 gi|383320650|ref|YP_005381491.1| - 2e-160 534.3 0.1 3.2e-160 533.7 0.1 1.3 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|383320650|ref|YP_005381491.1| - 1.1e-74 245.7 13.0 2.9e-13 49.1 0.1 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DNA_gyraseB PF00204.25 gi|383320651|ref|YP_005381492.1| - 1.3e-64 216.8 0.4 2.9e-64 215.7 0.4 1.6 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|383320651|ref|YP_005381492.1| - 2.1e-31 107.9 0.0 4.5e-31 106.8 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|383320651|ref|YP_005381492.1| - 1.2e-24 86.9 0.1 2.5e-24 85.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|383320651|ref|YP_005381492.1| - 3.3e-19 69.0 0.0 4.3e-18 65.4 0.0 2.6 3 0 0 3 3 3 1 Toprim domain HATPase_c_3 PF13589.6 gi|383320651|ref|YP_005381492.1| - 8e-05 22.5 0.0 0.00017 21.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOPRIM_C PF16898.5 gi|383320651|ref|YP_005381492.1| - 0.0019 18.5 0.1 0.0053 17.0 0.0 1.8 2 0 0 2 2 2 1 C-terminal associated domain of TOPRIM Cro PF09048.10 gi|383320651|ref|YP_005381492.1| - 0.14 12.2 0.1 19 5.4 0.0 2.8 2 0 0 2 2 2 0 Cro MethyltransfD12 PF02086.15 gi|383320653|ref|YP_005381494.1| - 2.4e-22 79.9 0.0 4.9e-22 78.8 0.0 1.5 1 1 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase S4 PF01479.25 gi|383320654|ref|YP_005381495.1| - 8.1e-14 51.1 1.7 1.4e-13 50.3 0.3 2.2 3 0 0 3 3 3 1 S4 domain FtsJ PF01728.19 gi|383320654|ref|YP_005381495.1| - 6.4e-08 32.9 0.0 1e-07 32.2 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|383320654|ref|YP_005381495.1| - 6.4e-06 26.8 0.0 9.2e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383320654|ref|YP_005381495.1| - 8e-06 25.8 0.0 1.1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain S4_2 PF13275.6 gi|383320654|ref|YP_005381495.1| - 1.9e-05 24.4 0.1 5.2e-05 23.0 0.1 1.8 1 0 0 1 1 1 1 S4 domain Methyltransf_31 PF13847.6 gi|383320654|ref|YP_005381495.1| - 9.3e-05 22.3 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383320654|ref|YP_005381495.1| - 0.00037 21.1 0.0 0.00061 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|383320654|ref|YP_005381495.1| - 0.0008 20.1 0.0 0.0013 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|383320654|ref|YP_005381495.1| - 0.006 15.7 0.0 0.0088 15.2 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin RrnaAD PF00398.20 gi|383320654|ref|YP_005381495.1| - 0.068 12.2 0.0 0.088 11.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Thr_dehydrat_C PF00585.18 gi|383320654|ref|YP_005381495.1| - 0.072 12.9 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 C-terminal regulatory domain of Threonine dehydratase CMAS PF02353.20 gi|383320654|ref|YP_005381495.1| - 0.17 11.2 0.0 0.24 10.7 0.0 1.3 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF2129 PF09902.9 gi|383320655|ref|YP_005381496.1| - 0.11 12.6 0.2 19 5.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2129) DUF1848 PF08902.11 gi|383320656|ref|YP_005381497.1| - 0.24 11.1 0.0 0.26 11.0 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1848) PIN PF01850.21 gi|383320657|ref|YP_005381498.1| - 0.00014 22.3 0.0 0.00019 21.9 0.0 1.2 1 0 0 1 1 1 1 PIN domain Rep_Org_C PF06926.11 gi|383320657|ref|YP_005381498.1| - 0.061 13.6 0.2 0.87 9.9 0.1 2.1 1 1 1 2 2 2 0 Putative replisome organiser protein C-terminus MazE_antitoxin PF04014.18 gi|383320658|ref|YP_005381499.1| - 1.7e-10 40.6 0.1 1.7e-10 40.6 0.1 1.6 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|383320658|ref|YP_005381499.1| - 0.00034 21.0 0.0 0.00037 20.9 0.0 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin THUMP PF02926.17 gi|383320659|ref|YP_005381500.1| - 6.7e-07 29.5 0.0 1.9e-06 28.0 0.0 1.8 2 0 0 2 2 2 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|383320659|ref|YP_005381500.1| - 0.0062 16.9 2.0 0.0062 16.9 2.0 2.7 3 0 0 3 3 3 1 DnaJ central domain Ribosomal_L21e PF01157.18 gi|383320660|ref|YP_005381501.1| - 4.4e-37 126.0 0.9 4.8e-37 125.9 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|383320661|ref|YP_005381502.1| - 3.5e-10 40.3 1.8 4.9e-10 39.8 1.8 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF655 PF04919.12 gi|383320662|ref|YP_005381503.1| - 1.8e-70 236.6 2.3 2e-70 236.4 2.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|383320662|ref|YP_005381503.1| - 0.0015 18.8 0.0 0.0036 17.5 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|383320662|ref|YP_005381503.1| - 0.0079 16.4 0.0 0.022 15.0 0.0 1.7 1 1 1 2 2 2 1 Helix-hairpin-helix motif RrnaAD PF00398.20 gi|383320663|ref|YP_005381504.1| - 8.3e-57 192.3 0.0 1.1e-56 191.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|383320663|ref|YP_005381504.1| - 2.6e-08 34.4 0.0 4.5e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383320663|ref|YP_005381504.1| - 3e-06 27.8 0.0 7.9e-06 26.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383320663|ref|YP_005381504.1| - 0.00065 19.5 0.0 0.00095 19.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383320663|ref|YP_005381504.1| - 0.0015 18.4 0.0 0.0021 17.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|383320663|ref|YP_005381504.1| - 0.0062 15.7 0.0 0.0092 15.1 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Met_10 PF02475.16 gi|383320663|ref|YP_005381504.1| - 0.0073 16.1 0.0 0.015 15.0 0.0 1.5 2 0 0 2 2 2 1 Met-10+ like-protein FtsJ PF01728.19 gi|383320663|ref|YP_005381504.1| - 0.0088 16.2 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.19 gi|383320663|ref|YP_005381504.1| - 0.025 14.3 0.0 0.094 12.5 0.0 1.8 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|383320663|ref|YP_005381504.1| - 0.037 13.6 0.0 0.059 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|383320663|ref|YP_005381504.1| - 0.053 13.5 0.0 0.091 12.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|383320663|ref|YP_005381504.1| - 0.058 14.1 0.0 0.1 13.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Hanta_nucleocap PF00846.18 gi|383320663|ref|YP_005381504.1| - 0.13 10.7 0.0 0.18 10.2 0.0 1.1 1 0 0 1 1 1 0 Hantavirus nucleocapsid protein NodS PF05401.11 gi|383320663|ref|YP_005381504.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) MTS PF05175.14 gi|383320664|ref|YP_005381505.1| - 2.7e-09 36.8 0.0 8.4e-07 28.7 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|383320664|ref|YP_005381505.1| - 1.4e-06 28.8 0.0 1.3e-05 25.8 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383320664|ref|YP_005381505.1| - 1.8e-06 28.6 0.0 6.8e-05 23.5 0.0 2.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383320664|ref|YP_005381505.1| - 1.2e-05 25.2 0.0 0.00016 21.6 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|383320664|ref|YP_005381505.1| - 4.9e-05 22.9 0.0 8.1e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 gi|383320664|ref|YP_005381505.1| - 8.4e-05 22.4 0.0 0.00011 21.9 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_12 PF08242.12 gi|383320664|ref|YP_005381505.1| - 0.00027 21.6 0.0 0.025 15.3 0.0 2.7 3 1 0 3 3 3 1 Methyltransferase domain UPF0146 PF03686.13 gi|383320664|ref|YP_005381505.1| - 0.0075 16.1 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) PCMT PF01135.19 gi|383320664|ref|YP_005381505.1| - 0.13 11.9 0.0 0.29 10.9 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|383320664|ref|YP_005381505.1| - 0.18 10.8 0.0 0.28 10.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Carb_kinase PF01256.17 gi|383320665|ref|YP_005381506.1| - 7.6e-51 172.9 0.1 1.2e-50 172.2 0.1 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|383320665|ref|YP_005381506.1| - 7.6e-42 143.1 0.1 1.6e-41 142.1 0.1 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus PfkB PF00294.24 gi|383320665|ref|YP_005381506.1| - 0.00072 18.9 3.0 0.0049 16.2 0.2 2.1 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|383320665|ref|YP_005381506.1| - 0.0017 17.8 0.0 0.005 16.2 0.0 1.7 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase HK PF02110.15 gi|383320665|ref|YP_005381506.1| - 0.025 14.0 0.4 0.045 13.1 0.4 1.3 1 0 0 1 1 1 0 Hydroxyethylthiazole kinase family MoaC PF01967.21 gi|383320666|ref|YP_005381507.1| - 2.7e-49 166.8 5.6 3.1e-49 166.6 5.6 1.0 1 0 0 1 1 1 1 MoaC family Tissue_fac PF01108.17 gi|383320666|ref|YP_005381507.1| - 0.077 12.8 0.0 0.18 11.7 0.0 1.5 1 1 0 1 1 1 0 Tissue factor SpoU_methylase PF00588.19 gi|383320667|ref|YP_005381508.1| - 2.2e-36 125.2 0.0 2.9e-36 124.8 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|383320667|ref|YP_005381508.1| - 0.00018 21.4 0.0 0.00043 20.2 0.0 1.7 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase SepSecS PF05889.13 gi|383320668|ref|YP_005381509.1| - 7.3e-51 173.1 0.0 1.4e-50 172.2 0.0 1.4 1 1 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|383320668|ref|YP_005381509.1| - 2.9e-19 69.3 0.0 4.1e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|383320668|ref|YP_005381509.1| - 2.9e-08 33.3 0.0 3e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II OKR_DC_1 PF01276.20 gi|383320668|ref|YP_005381509.1| - 5.7e-05 22.0 0.0 0.00022 20.1 0.0 1.9 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain DegT_DnrJ_EryC1 PF01041.17 gi|383320668|ref|YP_005381509.1| - 0.00025 20.5 0.0 0.00061 19.2 0.0 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|383320668|ref|YP_005381509.1| - 0.0022 16.6 0.0 0.0034 16.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|383320668|ref|YP_005381509.1| - 0.0076 15.6 0.0 0.0093 15.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase FAD_binding_2 PF00890.24 gi|383320669|ref|YP_005381510.1| - 3.2e-08 33.1 1.7 8.3e-05 21.8 1.0 2.1 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|383320669|ref|YP_005381510.1| - 0.00018 21.2 0.6 0.00047 19.8 0.6 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|383320669|ref|YP_005381510.1| - 0.0016 17.8 0.9 1 8.5 1.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|383320669|ref|YP_005381510.1| - 0.047 13.9 1.2 0.1 12.8 1.2 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|383320669|ref|YP_005381510.1| - 1.9 7.1 4.2 3.1 6.4 0.3 2.5 3 0 0 3 3 3 0 HI0933-like protein CCG PF02754.16 gi|383320670|ref|YP_005381511.1| - 1.1e-30 105.6 6.1 2.3e-15 56.6 0.1 2.7 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_9 PF13187.6 gi|383320670|ref|YP_005381511.1| - 6.5e-08 32.6 9.8 6.5e-08 32.6 9.8 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383320670|ref|YP_005381511.1| - 2.7e-07 31.1 12.1 2.7e-07 31.1 12.1 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383320670|ref|YP_005381511.1| - 4.1e-07 30.0 9.8 4.1e-07 30.0 9.8 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383320670|ref|YP_005381511.1| - 1.3e-06 28.4 26.9 8.4e-06 25.8 13.7 3.0 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383320670|ref|YP_005381511.1| - 1.7e-05 25.1 15.2 7.7e-05 23.1 13.3 3.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383320670|ref|YP_005381511.1| - 2.4e-05 25.2 10.9 0.0078 17.1 0.5 3.0 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|383320670|ref|YP_005381511.1| - 0.0001 22.2 13.1 0.0012 18.8 1.9 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|383320670|ref|YP_005381511.1| - 0.00021 21.8 10.8 0.00074 20.0 0.9 3.6 5 0 0 5 5 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383320670|ref|YP_005381511.1| - 0.00027 21.2 13.3 0.001 19.4 1.9 4.3 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4 PF00037.27 gi|383320670|ref|YP_005381511.1| - 0.0004 20.1 17.6 0.00068 19.4 4.7 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|383320670|ref|YP_005381511.1| - 0.0013 18.9 1.1 0.0013 18.9 1.1 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383320670|ref|YP_005381511.1| - 0.11 13.1 13.5 0.38 11.3 1.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|383320670|ref|YP_005381511.1| - 0.39 11.5 6.3 2.3 9.0 0.4 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain ABC2_membrane_2 PF12679.7 gi|383320671|ref|YP_005381512.1| - 4.1e-12 46.0 21.8 7.3e-12 45.2 21.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|383320671|ref|YP_005381512.1| - 3e-08 33.3 16.6 5.1e-08 32.6 15.7 1.8 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|383320671|ref|YP_005381512.1| - 7.9e-07 28.5 19.4 7.9e-07 28.5 19.4 2.0 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383320671|ref|YP_005381512.1| - 6.3e-06 26.3 15.8 6.3e-06 26.3 15.8 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ArAE_1 PF06081.11 gi|383320671|ref|YP_005381512.1| - 4 7.6 16.6 0.057 13.6 7.9 2.3 2 1 1 3 3 3 0 Aromatic acid exporter family member 1 ABC_tran PF00005.27 gi|383320672|ref|YP_005381513.1| - 4.7e-28 98.4 0.0 7.2e-28 97.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320672|ref|YP_005381513.1| - 2.3e-12 47.4 0.2 3.5e-07 30.3 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|383320672|ref|YP_005381513.1| - 1.3e-08 35.4 0.1 2.2e-08 34.7 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|383320672|ref|YP_005381513.1| - 0.0018 18.1 0.0 1.2 8.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SRP54 PF00448.22 gi|383320672|ref|YP_005381513.1| - 0.0022 17.6 0.0 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|383320672|ref|YP_005381513.1| - 0.007 15.1 0.0 0.93 8.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.15 gi|383320672|ref|YP_005381513.1| - 0.0075 16.2 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|383320672|ref|YP_005381513.1| - 0.013 16.0 0.1 0.023 15.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|383320672|ref|YP_005381513.1| - 0.029 14.1 0.1 0.054 13.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|383320672|ref|YP_005381513.1| - 0.043 14.2 0.0 0.37 11.2 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|383320672|ref|YP_005381513.1| - 0.067 13.5 0.1 0.69 10.2 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA PF00004.29 gi|383320672|ref|YP_005381513.1| - 0.071 13.5 0.3 0.53 10.7 0.1 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|383320672|ref|YP_005381513.1| - 0.095 12.6 0.1 7.8 6.4 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|383320672|ref|YP_005381513.1| - 0.14 11.8 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoU PF01895.19 gi|383320672|ref|YP_005381513.1| - 0.14 12.6 0.7 0.34 11.4 0.4 1.7 2 0 0 2 2 1 0 PhoU domain SMC_N PF02463.19 gi|383320672|ref|YP_005381513.1| - 0.24 10.8 0.0 21 4.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane_2 PF12679.7 gi|383320673|ref|YP_005381514.1| - 2.2e-12 46.9 24.1 3.1e-12 46.4 22.9 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|383320673|ref|YP_005381514.1| - 2.1e-10 40.3 20.3 3.1e-10 39.7 20.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|383320673|ref|YP_005381514.1| - 6.3e-07 29.5 13.4 6.3e-07 29.5 13.4 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|383320673|ref|YP_005381514.1| - 0.00048 19.7 19.7 0.00048 19.7 19.7 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein SPC12 PF06645.13 gi|383320673|ref|YP_005381514.1| - 0.11 12.6 0.1 0.11 12.6 0.1 3.0 3 1 0 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) ABC_tran PF00005.27 gi|383320674|ref|YP_005381515.1| - 1.2e-30 106.9 0.0 1.6e-30 106.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320674|ref|YP_005381515.1| - 1.1e-13 51.7 0.0 3.4e-09 36.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|383320674|ref|YP_005381515.1| - 4.5e-05 22.3 0.0 0.11 11.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.6 gi|383320674|ref|YP_005381515.1| - 6.4e-05 23.6 0.0 0.0001 22.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|383320674|ref|YP_005381515.1| - 0.0049 16.6 0.0 3.2 7.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|383320674|ref|YP_005381515.1| - 0.016 15.7 0.0 0.026 15.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|383320674|ref|YP_005381515.1| - 0.019 15.4 0.2 0.19 12.1 0.2 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|383320674|ref|YP_005381515.1| - 0.047 13.3 0.0 0.075 12.6 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|383320674|ref|YP_005381515.1| - 0.14 11.9 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TraB PF01963.17 gi|383320675|ref|YP_005381516.1| - 5.6e-07 29.7 0.0 0.00068 19.6 0.0 2.1 2 0 0 2 2 2 2 TraB family Ribosomal_S8e PF01201.22 gi|383320676|ref|YP_005381517.1| - 4.8e-30 104.5 3.7 5.3e-30 104.4 3.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e AhpC-TSA PF00578.21 gi|383320677|ref|YP_005381518.1| - 8e-28 96.8 0.0 9.4e-28 96.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|383320677|ref|YP_005381518.1| - 6.9e-16 58.3 0.0 8.5e-16 58.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|383320678|ref|YP_005381519.1| - 1.9e-20 73.0 0.0 2.4e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|383320678|ref|YP_005381519.1| - 3.5e-11 43.0 0.0 4.9e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 gi|383320678|ref|YP_005381519.1| - 0.01 16.2 0.0 0.014 15.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like DUF531 PF04407.12 gi|383320679|ref|YP_005381520.1| - 7.1e-77 257.3 0.0 8.1e-77 257.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.6 gi|383320679|ref|YP_005381520.1| - 1.8e-05 24.2 0.0 2.4e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP Methyltrn_RNA_4 PF09936.9 gi|383320679|ref|YP_005381520.1| - 0.0017 18.2 0.0 0.0025 17.7 0.0 1.2 1 0 0 1 1 1 1 SAM-dependent RNA methyltransferase PIN PF01850.21 gi|383320680|ref|YP_005381521.1| - 6.8e-05 23.4 0.0 0.00013 22.5 0.0 1.5 1 0 0 1 1 1 1 PIN domain MG2 PF01835.19 gi|383320681|ref|YP_005381522.1| - 0.00034 21.0 0.4 10 6.7 0.0 4.7 4 0 0 4 4 4 2 MG2 domain FlgD_ig PF13860.6 gi|383320681|ref|YP_005381522.1| - 0.015 15.2 4.1 0.38 10.6 0.4 4.2 3 0 0 3 3 3 0 FlgD Ig-like domain DUF4469 PF14734.6 gi|383320681|ref|YP_005381522.1| - 0.033 14.3 1.3 3.3 7.9 0.1 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4469) with IG-like fold DUF3244 PF11589.8 gi|383320681|ref|YP_005381522.1| - 0.079 13.0 14.6 2.2 8.4 1.8 5.0 4 1 0 4 4 4 0 Domain of unknown function (DUF3244) Glyco_hydro_2 PF00703.21 gi|383320681|ref|YP_005381522.1| - 1.3 9.8 4.1 33 5.2 0.1 4.4 3 0 0 3 3 3 0 Glycosyl hydrolases family 2 AGT PF11440.8 gi|383320683|ref|YP_005381524.1| - 0.042 12.9 0.2 0.11 11.5 0.0 1.7 2 0 0 2 2 2 0 DNA alpha-glucosyltransferase DUF11 PF01345.18 gi|383320683|ref|YP_005381524.1| - 2.5 8.4 27.1 1.1 9.6 1.1 4.9 4 2 0 4 4 4 0 Domain of unknown function DUF11 tRNA-synt_2b PF00587.25 gi|383320684|ref|YP_005381525.1| - 2e-28 99.6 0.0 3.3e-28 98.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|383320684|ref|YP_005381525.1| - 5.5e-20 71.3 0.0 9.2e-20 70.6 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|383320684|ref|YP_005381525.1| - 5.4e-12 45.7 0.0 1.7e-11 44.2 0.0 1.9 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal AsnC_trans_reg PF01037.21 gi|383320685|ref|YP_005381526.1| - 1.8e-10 40.6 0.1 2.1e-10 40.4 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|383320685|ref|YP_005381526.1| - 0.0027 17.6 0.1 0.0031 17.4 0.1 1.1 1 0 0 1 1 1 1 GYD domain NapD PF03927.13 gi|383320685|ref|YP_005381526.1| - 0.043 13.9 0.3 0.054 13.5 0.3 1.2 1 0 0 1 1 1 0 NapD protein Ribosomal_S27e PF01667.17 gi|383320686|ref|YP_005381527.1| - 0.061 13.0 0.2 0.11 12.2 0.2 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 TRAF6_Z2 PF18048.1 gi|383320686|ref|YP_005381527.1| - 0.095 12.8 0.6 0.22 11.7 0.6 1.6 1 0 0 1 1 1 0 TNF receptor-associated factor 6 zinc finger 2 zinc_ribbon_9 PF14369.6 gi|383320686|ref|YP_005381527.1| - 0.58 10.5 4.3 0.38 11.1 0.6 2.2 1 1 1 2 2 2 0 zinc-ribbon zinc_ribbon_4 PF13717.6 gi|383320686|ref|YP_005381527.1| - 2.9 7.9 5.8 58 3.7 5.8 2.3 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|383320686|ref|YP_005381527.1| - 5.8 7.0 5.9 90 3.2 0.2 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-DNL PF05180.12 gi|383320686|ref|YP_005381527.1| - 9.3 6.3 5.9 15 5.6 0.1 2.6 2 1 1 3 3 3 0 DNL zinc finger Ribosomal_L18 PF17135.4 gi|383320687|ref|YP_005381528.1| - 2e-10 40.4 0.2 2.1e-10 40.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|383320687|ref|YP_005381528.1| - 9.8e-07 29.5 0.2 2.6e-06 28.2 0.2 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|383320688|ref|YP_005381529.1| - 2.3e-10 40.8 0.1 1.2e-08 35.2 0.1 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 SLBP_RNA_bind PF15247.6 gi|383320688|ref|YP_005381529.1| - 0.089 12.9 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 Histone RNA hairpin-binding protein RNA-binding domain Ribosomal_S9 PF00380.19 gi|383320689|ref|YP_005381530.1| - 4.3e-31 107.9 0.1 4.9e-31 107.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|383320690|ref|YP_005381531.1| - 1.1e-28 99.3 0.4 1.3e-28 99.1 0.4 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.22 gi|383320691|ref|YP_005381532.1| - 3e-12 46.3 0.2 4.1e-12 45.8 0.2 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.22 gi|383320692|ref|YP_005381533.1| - 3e-75 253.2 0.1 4.6e-75 252.6 0.1 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|383320692|ref|YP_005381533.1| - 4.5e-33 114.2 2.5 2.4e-32 111.9 0.6 2.7 2 1 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|383320692|ref|YP_005381533.1| - 2.4e-11 43.6 0.1 4.6e-11 42.7 0.1 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|383320692|ref|YP_005381533.1| - 0.01 15.0 0.4 0.035 13.3 0.1 1.9 2 0 0 2 2 2 0 Methylaspartate ammonia-lyase C-terminus Trimer_CC PF08954.11 gi|383320692|ref|YP_005381533.1| - 0.077 12.6 0.0 0.24 11.0 0.0 1.8 2 0 0 2 2 2 0 Trimerisation motif Ribosomal_S2 PF00318.20 gi|383320693|ref|YP_005381534.1| - 4e-28 98.1 1.0 9.6e-15 54.4 1.3 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Memo PF01875.17 gi|383320694|ref|YP_005381535.1| - 1.2e-72 244.4 0.0 1.3e-72 244.2 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|383320694|ref|YP_005381535.1| - 0.13 11.4 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase GHMP_kinases_N PF00288.26 gi|383320695|ref|YP_005381536.1| - 2.9e-17 62.7 0.7 1.2e-15 57.5 0.4 2.6 2 1 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|383320695|ref|YP_005381536.1| - 5.1e-16 58.8 0.1 1.2e-15 57.6 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|383320695|ref|YP_005381536.1| - 0.00098 18.6 0.0 0.0024 17.4 0.0 1.7 1 0 0 1 1 1 1 Galactokinase galactose-binding signature AA_kinase PF00696.28 gi|383320696|ref|YP_005381537.1| - 1.7e-44 152.2 2.5 2e-44 152.0 2.5 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.18 gi|383320697|ref|YP_005381538.1| - 1.4e-27 96.7 5.2 2.1e-14 53.3 4.6 2.2 1 1 1 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|383320697|ref|YP_005381538.1| - 0.0004 19.9 0.4 0.00071 19.1 0.4 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.25 gi|383320697|ref|YP_005381538.1| - 0.00095 18.3 1.1 0.011 14.8 0.6 2.6 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|383320697|ref|YP_005381538.1| - 0.044 12.9 1.2 0.18 10.9 0.4 2.1 2 0 0 2 2 2 0 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|383320697|ref|YP_005381538.1| - 0.076 12.2 0.2 0.97 8.6 0.1 2.2 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase RMMBL PF07521.12 gi|383320698|ref|YP_005381539.1| - 5.4e-08 32.7 1.3 8.5e-08 32.0 0.1 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|383320698|ref|YP_005381539.1| - 5.8e-08 33.0 0.4 2.1e-07 31.1 0.4 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|383320698|ref|YP_005381539.1| - 2.9e-06 26.9 1.2 9.3e-06 25.3 0.1 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Hpr_kinase_N PF02603.16 gi|383320698|ref|YP_005381539.1| - 0.14 12.2 0.0 0.5 10.4 0.0 1.9 2 0 0 2 2 2 0 HPr Serine kinase N terminus tRNA-synt_1c PF00749.21 gi|383320699|ref|YP_005381540.1| - 2e-65 220.7 0.0 2.7e-65 220.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|383320699|ref|YP_005381540.1| - 9e-23 81.0 0.0 2.9e-22 79.4 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain Put_DNA-bind_N PF06971.13 gi|383320699|ref|YP_005381540.1| - 0.08 13.0 0.1 0.18 11.9 0.1 1.6 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus GAF_2 PF13185.6 gi|383320700|ref|YP_005381541.1| - 4.7e-16 59.3 0.0 1e-15 58.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|383320700|ref|YP_005381541.1| - 3e-14 53.8 0.0 5.5e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|383320700|ref|YP_005381541.1| - 2.3e-07 31.3 0.0 4.1e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|383320700|ref|YP_005381541.1| - 0.0023 18.3 0.0 0.0043 17.4 0.0 1.4 1 0 0 1 1 1 1 GAF domain bHLH-MYC_N PF14215.6 gi|383320700|ref|YP_005381541.1| - 0.22 11.8 0.0 0.43 10.8 0.0 1.5 1 0 0 1 1 1 0 bHLH-MYC and R2R3-MYB transcription factors N-terminal CarbopepD_reg_2 PF13715.6 gi|383320701|ref|YP_005381542.1| - 0.0024 17.8 0.6 0.0047 16.9 0.6 1.4 1 0 0 1 1 1 1 CarboxypepD_reg-like domain TPR_11 PF13414.6 gi|383320702|ref|YP_005381543.1| - 1.7e-58 194.0 12.3 2.5e-07 30.3 0.0 9.1 3 3 6 9 9 9 9 TPR repeat TPR_2 PF07719.17 gi|383320702|ref|YP_005381543.1| - 2.7e-53 173.8 12.6 1.1e-05 25.1 0.0 10.2 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_1 PF00515.28 gi|383320702|ref|YP_005381543.1| - 3.4e-41 137.4 11.8 5.1e-05 22.9 0.2 10.1 10 0 0 10 10 10 8 Tetratricopeptide repeat TPR_8 PF13181.6 gi|383320702|ref|YP_005381543.1| - 3.9e-41 135.8 15.8 0.00031 20.7 0.4 10.3 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_16 PF13432.6 gi|383320702|ref|YP_005381543.1| - 1.5e-38 131.2 0.1 6e-08 33.2 0.0 5.7 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|383320702|ref|YP_005381543.1| - 4.1e-37 126.5 28.2 2.5e-08 34.3 0.3 6.9 1 1 8 9 9 9 9 Tetratricopeptide repeat TPR_14 PF13428.6 gi|383320702|ref|YP_005381543.1| - 4.2e-35 117.4 14.1 0.002 18.8 0.0 10.1 1 1 9 10 10 10 9 Tetratricopeptide repeat TPR_17 PF13431.6 gi|383320702|ref|YP_005381543.1| - 8.6e-35 116.6 2.9 0.0075 16.6 0.0 9.3 9 0 0 9 9 9 8 Tetratricopeptide repeat TPR_9 PF13371.6 gi|383320702|ref|YP_005381543.1| - 3.1e-23 81.7 4.1 5.6e-05 23.2 0.1 5.5 4 1 2 6 6 5 5 Tetratricopeptide repeat TPR_20 PF14561.6 gi|383320702|ref|YP_005381543.1| - 2.5e-22 79.0 4.3 0.0016 18.7 0.1 7.5 2 1 6 8 8 8 7 Tetratricopeptide repeat TPR_6 PF13174.6 gi|383320702|ref|YP_005381543.1| - 5.4e-19 67.5 8.0 0.34 11.7 0.2 8.9 9 0 0 9 9 8 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|383320702|ref|YP_005381543.1| - 4.6e-18 65.3 19.7 6.6e-05 23.1 1.3 7.0 2 2 5 7 7 7 7 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383320702|ref|YP_005381543.1| - 9.7e-15 53.5 8.6 0.12 12.4 0.1 9.1 9 0 0 9 9 9 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|383320702|ref|YP_005381543.1| - 8.4e-13 48.4 4.8 0.0082 16.3 1.1 4.7 1 1 3 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|383320702|ref|YP_005381543.1| - 2.3e-10 40.0 23.0 0.41 10.6 0.1 9.5 9 1 2 11 11 11 4 Tetratricopeptide repeat BTAD PF03704.17 gi|383320702|ref|YP_005381543.1| - 2e-09 38.0 1.1 0.018 15.5 1.3 4.3 1 1 4 5 5 5 2 Bacterial transcriptional activator domain TPR_15 PF13429.6 gi|383320702|ref|YP_005381543.1| - 9.1e-09 34.9 0.6 0.025 13.8 0.0 5.0 1 1 3 4 4 4 1 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|383320702|ref|YP_005381543.1| - 1.8e-08 34.2 0.0 8.2e-06 25.4 0.0 2.4 2 0 0 2 2 2 2 MalT-like TPR region TPR_21 PF09976.9 gi|383320702|ref|YP_005381543.1| - 9.5e-07 28.7 3.5 0.0039 16.9 0.6 3.2 2 1 1 3 3 3 2 Tetratricopeptide repeat-like domain Fis1_TPR_C PF14853.6 gi|383320702|ref|YP_005381543.1| - 3.5e-06 27.0 10.8 0.013 15.5 0.1 6.6 7 1 1 8 8 7 1 Fis1 C-terminal tetratricopeptide repeat TOM20_plant PF06552.12 gi|383320702|ref|YP_005381543.1| - 4.6e-06 26.5 3.4 12 5.5 0.0 6.3 1 1 4 6 6 6 0 Plant specific mitochondrial import receptor subunit TOM20 HrpB1_HrpK PF09613.10 gi|383320702|ref|YP_005381543.1| - 0.00025 20.7 0.8 5.3 6.7 0.0 4.5 2 2 3 6 6 6 1 Bacterial type III secretion protein (HrpB1_HrpK) PknG_TPR PF16918.5 gi|383320702|ref|YP_005381543.1| - 0.0023 16.7 0.6 4.8 5.8 0.0 3.6 1 1 1 3 3 3 1 Protein kinase G tetratricopeptide repeat Coatomer_E PF04733.14 gi|383320702|ref|YP_005381543.1| - 0.009 15.4 0.7 3.1 7.1 0.0 3.5 1 1 2 3 3 3 1 Coatomer epsilon subunit ANAPC5 PF12862.7 gi|383320702|ref|YP_005381543.1| - 0.012 15.6 6.8 10 6.3 0.0 5.9 2 2 3 5 5 5 0 Anaphase-promoting complex subunit 5 NARP1 PF12569.8 gi|383320702|ref|YP_005381543.1| - 0.015 14.2 0.0 0.015 14.2 0.0 3.9 2 1 3 5 5 4 0 NMDA receptor-regulated protein 1 TPR_4 PF07721.14 gi|383320702|ref|YP_005381543.1| - 0.025 15.2 2.3 64 4.6 0.0 5.1 5 0 0 5 5 4 0 Tetratricopeptide repeat ChAPs PF09295.10 gi|383320702|ref|YP_005381543.1| - 0.053 12.5 0.0 3.7 6.4 0.0 2.8 2 1 1 3 3 3 0 ChAPs (Chs5p-Arf1p-binding proteins) HemY_N PF07219.13 gi|383320702|ref|YP_005381543.1| - 0.061 13.5 0.7 83 3.4 0.1 4.0 2 1 1 4 4 4 0 HemY protein N-terminus HTH_30 PF13556.6 gi|383320702|ref|YP_005381543.1| - 0.076 12.8 1.9 29 4.5 0.0 4.6 6 0 0 6 6 6 0 PucR C-terminal helix-turn-helix domain SHNi-TPR PF10516.9 gi|383320702|ref|YP_005381543.1| - 0.14 11.7 7.1 3.4 7.2 0.0 4.8 6 0 0 6 6 6 0 SHNi-TPR DUF3856 PF12968.7 gi|383320702|ref|YP_005381543.1| - 1.4 9.0 5.5 15 5.6 0.1 4.2 3 1 0 4 4 3 0 Domain of Unknown Function (DUF3856) Peripla_BP_2 PF01497.18 gi|383320703|ref|YP_005381544.1| - 2.4e-37 128.8 0.7 3.2e-37 128.4 0.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein T2SS-T3SS_pil_N PF13629.6 gi|383320703|ref|YP_005381544.1| - 0.015 15.0 0.4 0.041 13.6 0.3 2.0 1 1 0 1 1 1 0 Pilus formation protein N terminal region Spherulin4 PF12138.8 gi|383320703|ref|YP_005381544.1| - 0.045 13.4 0.1 0.064 12.9 0.1 1.2 1 0 0 1 1 1 0 Spherulation-specific family 4 Trehalase_Ca-bi PF07492.11 gi|383320703|ref|YP_005381544.1| - 0.098 12.4 0.7 0.2 11.4 0.7 1.5 1 0 0 1 1 1 0 Neutral trehalase Ca2+ binding domain FecCD PF01032.18 gi|383320704|ref|YP_005381545.1| - 1.3e-86 290.5 42.0 1.6e-86 290.2 41.2 1.5 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|383320704|ref|YP_005381545.1| - 1.6e-06 27.8 25.3 1.6e-06 27.8 25.3 2.1 1 1 1 2 2 2 1 ABC 3 transport family SLATT_fungal PF18142.1 gi|383320704|ref|YP_005381545.1| - 6.5 6.8 6.8 0.98 9.4 1.6 2.2 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain ABC_tran PF00005.27 gi|383320705|ref|YP_005381546.1| - 1.2e-33 116.6 0.0 1.8e-33 116.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|383320705|ref|YP_005381546.1| - 2.1e-10 40.5 0.3 0.00019 20.9 0.2 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|383320705|ref|YP_005381546.1| - 1.1e-08 35.3 0.4 0.00012 22.0 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|383320705|ref|YP_005381546.1| - 4.7e-06 26.3 0.0 9.1e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|383320705|ref|YP_005381546.1| - 6e-06 26.9 0.0 1.4e-05 25.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|383320705|ref|YP_005381546.1| - 0.00038 20.3 0.0 0.00059 19.7 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|383320705|ref|YP_005381546.1| - 0.0022 17.4 0.0 0.0043 16.4 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|383320705|ref|YP_005381546.1| - 0.0027 18.1 0.0 0.0036 17.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|383320705|ref|YP_005381546.1| - 0.0084 16.5 0.0 0.018 15.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|383320705|ref|YP_005381546.1| - 0.0095 15.9 0.0 0.021 14.7 0.0 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea Cytidylate_kin PF02224.18 gi|383320705|ref|YP_005381546.1| - 0.028 14.2 0.2 0.12 12.1 0.1 1.9 1 1 0 1 1 1 0 Cytidylate kinase AAA_27 PF13514.6 gi|383320705|ref|YP_005381546.1| - 0.046 13.3 0.0 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|383320705|ref|YP_005381546.1| - 0.055 13.4 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase RNA12 PF10443.9 gi|383320705|ref|YP_005381546.1| - 0.064 12.0 0.0 0.091 11.5 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein AAA_30 PF13604.6 gi|383320705|ref|YP_005381546.1| - 0.065 12.9 0.0 0.16 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|383320705|ref|YP_005381546.1| - 0.07 13.0 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|383320705|ref|YP_005381546.1| - 0.077 13.0 0.0 0.87 9.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|383320705|ref|YP_005381546.1| - 0.084 12.1 0.1 0.15 11.2 0.1 1.6 1 1 0 1 1 1 0 TIP49 P-loop domain AAA_14 PF13173.6 gi|383320705|ref|YP_005381546.1| - 0.095 12.7 0.0 0.26 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|383320705|ref|YP_005381546.1| - 0.097 12.9 0.0 0.32 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|383320705|ref|YP_005381546.1| - 0.1 11.8 0.0 0.29 10.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_PrkA PF08298.11 gi|383320705|ref|YP_005381546.1| - 0.11 11.4 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain TPR_12 PF13424.6 gi|383320706|ref|YP_005381547.1| - 5.5e-53 177.2 9.7 2.3e-17 63.1 1.2 3.6 3 1 2 5 5 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|383320706|ref|YP_005381547.1| - 2.7e-34 115.6 9.4 4e-07 29.6 0.1 5.5 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_10 PF13374.6 gi|383320706|ref|YP_005381547.1| - 3.4e-32 109.4 10.0 2.3e-07 30.4 0.5 6.3 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|383320706|ref|YP_005381547.1| - 5.3e-29 98.1 9.4 8.3e-05 22.3 0.1 6.1 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|383320706|ref|YP_005381547.1| - 3.4e-27 92.3 7.9 3.1e-05 23.7 0.0 5.8 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|383320706|ref|YP_005381547.1| - 3.3e-26 89.3 12.8 4.5e-06 26.5 0.0 5.9 6 0 0 6 6 5 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|383320706|ref|YP_005381547.1| - 7e-15 54.5 1.4 0.2 12.5 0.0 6.3 5 1 1 6 6 6 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|383320706|ref|YP_005381547.1| - 6.9e-14 52.2 5.8 1.1e-05 25.9 0.3 5.1 3 3 1 4 4 4 3 Tetratricopeptide repeat RPN7 PF10602.9 gi|383320706|ref|YP_005381547.1| - 2.9e-12 46.6 1.7 0.0004 20.1 0.1 4.1 1 1 3 4 4 4 3 26S proteasome subunit RPN7 ANAPC5 PF12862.7 gi|383320706|ref|YP_005381547.1| - 5.3e-12 45.6 0.6 0.2 11.8 0.0 4.6 1 1 4 5 5 5 4 Anaphase-promoting complex subunit 5 TPR_MalT PF17874.1 gi|383320706|ref|YP_005381547.1| - 9.1e-11 41.7 0.0 0.00015 21.3 0.0 2.2 1 1 1 2 2 2 2 MalT-like TPR region TPR_11 PF13414.6 gi|383320706|ref|YP_005381547.1| - 7e-10 38.4 15.0 0.00051 19.7 0.1 5.8 6 1 1 7 7 6 3 TPR repeat TPR_6 PF13174.6 gi|383320706|ref|YP_005381547.1| - 2.1e-09 37.4 0.9 1.9 9.3 0.0 5.7 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|383320706|ref|YP_005381547.1| - 2e-07 31.4 3.3 0.00031 21.2 0.3 3.3 3 1 0 3 3 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|383320706|ref|YP_005381547.1| - 3e-07 30.4 6.4 0.032 14.6 0.0 5.8 5 2 0 5 5 5 1 Tetratricopeptide repeat Rapsyn_N PF10579.9 gi|383320706|ref|YP_005381547.1| - 5e-07 29.7 0.5 0.044 13.9 0.0 3.4 3 1 1 4 4 4 2 Rapsyn N-terminal myristoylation and linker region SNAP PF14938.6 gi|383320706|ref|YP_005381547.1| - 9e-07 28.6 1.5 0.00013 21.5 0.3 2.2 1 1 0 2 2 2 1 Soluble NSF attachment protein, SNAP DUF3856 PF12968.7 gi|383320706|ref|YP_005381547.1| - 3.6e-06 27.1 5.7 0.0085 16.2 0.6 4.1 1 1 3 4 4 4 1 Domain of Unknown Function (DUF3856) PPR PF01535.20 gi|383320706|ref|YP_005381547.1| - 5.7e-06 26.2 10.3 0.076 13.3 0.1 5.3 6 0 0 6 6 4 2 PPR repeat TPR_21 PF09976.9 gi|383320706|ref|YP_005381547.1| - 1.3e-05 25.0 0.1 0.00023 20.9 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat-like domain TPR_4 PF07721.14 gi|383320706|ref|YP_005381547.1| - 2.1e-05 24.7 0.0 1.6 9.6 0.0 5.1 6 0 0 6 6 5 1 Tetratricopeptide repeat MIT PF04212.18 gi|383320706|ref|YP_005381547.1| - 2.2e-05 24.4 6.1 3.3 7.8 0.3 4.8 5 0 0 5 5 5 2 MIT (microtubule interacting and transport) domain TPR_9 PF13371.6 gi|383320706|ref|YP_005381547.1| - 4.5e-05 23.5 0.1 0.4 10.9 0.0 4.6 5 1 0 5 5 4 1 Tetratricopeptide repeat TPR_3 PF07720.12 gi|383320706|ref|YP_005381547.1| - 0.00011 22.1 1.9 2 8.5 0.0 4.5 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|383320706|ref|YP_005381547.1| - 0.00018 20.9 0.9 0.092 11.9 0.1 3.2 2 2 1 3 3 3 1 Tetratricopeptide repeat DUF2225 PF09986.9 gi|383320706|ref|YP_005381547.1| - 0.0044 16.8 2.7 0.34 10.6 0.3 3.0 1 1 2 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2225) Coatomer_E PF04733.14 gi|383320706|ref|YP_005381547.1| - 0.0046 16.4 0.8 0.76 9.1 0.2 2.9 1 1 0 2 2 2 1 Coatomer epsilon subunit ComR_TPR PF18710.1 gi|383320706|ref|YP_005381547.1| - 0.0068 16.0 0.1 0.35 10.4 0.0 2.4 1 1 0 2 2 2 1 ComR tetratricopeptide DUF5113 PF17140.4 gi|383320706|ref|YP_005381547.1| - 0.0093 15.8 3.7 18 5.1 0.1 4.0 3 1 1 4 4 4 0 Domain of unknown function (DUF5113) Sel1 PF08238.12 gi|383320706|ref|YP_005381547.1| - 0.011 16.4 0.0 49 4.8 0.0 4.2 4 0 0 4 4 3 0 Sel1 repeat HTH_Bact PF18768.1 gi|383320706|ref|YP_005381547.1| - 0.025 14.2 0.5 1.7 8.3 0.2 2.8 2 0 0 2 2 2 0 Helix-turn-helix bacterial domain PPR_2 PF13041.6 gi|383320706|ref|YP_005381547.1| - 0.058 13.6 2.5 4.8 7.5 0.1 3.7 4 0 0 4 4 3 0 PPR repeat family TRAPPC9-Trs120 PF08626.11 gi|383320706|ref|YP_005381547.1| - 0.064 10.6 0.9 0.57 7.5 0.0 2.4 2 1 1 3 3 3 0 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit S-methyl_trans PF02574.16 gi|383320706|ref|YP_005381547.1| - 0.065 13.0 0.1 1.2 8.9 0.0 2.1 2 0 0 2 2 2 0 Homocysteine S-methyltransferase DUF4810 PF16068.5 gi|383320706|ref|YP_005381547.1| - 0.068 13.7 1.6 17 6.0 0.0 3.8 5 0 0 5 5 4 0 Domain of unknown function (DUF4810) CODH_A_N PF18537.1 gi|383320706|ref|YP_005381547.1| - 0.069 13.2 0.1 0.56 10.2 0.0 2.3 2 1 0 2 2 2 0 Carbon monoxide dehydrogenase subunit alpha N-terminal domain SPOB_a PF14689.6 gi|383320706|ref|YP_005381547.1| - 0.13 12.0 1.1 26 4.6 0.0 3.2 3 0 0 3 3 3 0 Sensor_kinase_SpoOB-type, alpha-helical domain Ubiq_cyt_C_chap PF03981.12 gi|383320706|ref|YP_005381547.1| - 0.16 12.1 0.7 0.26 11.4 0.1 1.7 2 0 0 2 2 1 0 Ubiquinol-cytochrome C chaperone SPO22 PF08631.10 gi|383320706|ref|YP_005381547.1| - 0.16 11.4 3.6 38 3.7 0.8 3.1 1 1 0 2 2 2 0 Meiosis protein SPO22/ZIP4 like tRNA-synt_1 PF00133.22 gi|383320708|ref|YP_005381549.1| - 1.2e-62 212.1 0.3 8.8e-42 143.1 0.0 3.1 3 0 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|383320708|ref|YP_005381549.1| - 5.9e-21 75.0 0.4 1.2e-20 74.0 0.4 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|383320708|ref|YP_005381549.1| - 1.2e-20 73.7 0.2 1.9e-08 33.5 0.0 4.1 4 0 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|383320708|ref|YP_005381549.1| - 6.1e-08 32.4 0.2 2.1e-06 27.3 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|383320708|ref|YP_005381549.1| - 2.1e-07 30.6 0.0 5e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|383320708|ref|YP_005381549.1| - 0.0025 16.8 0.0 0.0088 15.0 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) GBP_repeat PF02526.14 gi|383320708|ref|YP_005381549.1| - 0.068 12.9 0.1 0.2 11.4 0.1 1.8 1 0 0 1 1 1 0 Glycophorin-binding protein Methyltransf_31 PF13847.6 gi|383320709|ref|YP_005381550.1| - 3e-09 36.8 0.0 7.4e-09 35.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383320709|ref|YP_005381550.1| - 7.8e-08 32.9 0.1 1.4e-07 32.1 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|383320709|ref|YP_005381550.1| - 3.1e-07 30.0 0.0 4.7e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|383320709|ref|YP_005381550.1| - 6.8e-07 29.2 0.0 9.7e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|383320709|ref|YP_005381550.1| - 1.2e-06 29.1 0.0 2.2e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|383320709|ref|YP_005381550.1| - 0.00035 20.2 0.1 0.00048 19.8 0.1 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MetW PF07021.12 gi|383320709|ref|YP_005381550.1| - 0.00086 19.0 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.6 gi|383320709|ref|YP_005381550.1| - 0.001 18.9 0.0 0.0017 18.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|383320709|ref|YP_005381550.1| - 0.0025 17.8 0.0 0.0036 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|383320709|ref|YP_005381550.1| - 0.0097 15.5 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_12 PF08242.12 gi|383320709|ref|YP_005381550.1| - 0.11 13.3 0.1 0.28 12.0 0.1 1.8 1 1 0 1 1 1 0 Methyltransferase domain GCD14 PF08704.10 gi|383320709|ref|YP_005381550.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit OTCace PF00185.24 gi|383320710|ref|YP_005381551.1| - 8.2e-56 188.4 0.0 1.3e-55 187.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|383320710|ref|YP_005381551.1| - 1e-52 178.1 0.0 1.6e-52 177.5 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Hexapep PF00132.24 gi|383320711|ref|YP_005381552.1| - 4.7e-12 45.1 9.4 1.3e-09 37.4 3.2 3.2 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|383320711|ref|YP_005381552.1| - 4.1e-11 42.4 10.0 5.1e-09 35.7 3.5 3.1 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase CHASE6_C PF17150.4 gi|383320711|ref|YP_005381552.1| - 0.11 13.2 0.0 0.15 12.7 0.0 1.3 1 0 0 1 1 1 0 C-terminal domain of two-partite extracellular sensor domain DUF1405 PF07187.11 gi|383320712|ref|YP_005381553.1| - 5.3e-31 107.8 18.1 8e-31 107.2 18.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) N6_Mtase PF02384.16 gi|383320714|ref|YP_005381555.1| - 4.4e-19 68.9 0.0 1.4e-18 67.2 0.0 1.9 1 1 0 1 1 1 1 N-6 DNA Methylase TaqI_C PF12950.7 gi|383320714|ref|YP_005381555.1| - 7.2e-19 68.0 4.8 1.9e-18 66.6 2.0 3.2 2 1 0 2 2 2 1 TaqI-like C-terminal specificity domain Eco57I PF07669.11 gi|383320714|ref|YP_005381555.1| - 5.7e-16 58.9 0.0 2.9e-15 56.6 0.0 2.2 1 0 0 1 1 1 1 Eco57I restriction-modification methylase HSDR_N PF04313.14 gi|383320714|ref|YP_005381555.1| - 7.2e-08 32.6 1.1 0.0043 17.0 0.0 3.8 2 1 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.18 gi|383320714|ref|YP_005381555.1| - 2e-05 24.4 0.0 0.00075 19.2 0.0 2.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|383320714|ref|YP_005381555.1| - 0.004 16.7 0.1 23 4.5 0.0 4.1 2 2 0 3 3 3 0 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|383320714|ref|YP_005381555.1| - 0.011 15.6 0.0 0.03 14.2 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383320714|ref|YP_005381555.1| - 0.016 15.0 0.0 0.62 9.9 0.0 2.8 1 1 0 1 1 1 0 Methyltransferase domain FIVAR PF07554.13 gi|383320714|ref|YP_005381555.1| - 0.082 13.7 0.8 0.22 12.3 0.1 2.1 2 0 0 2 2 2 0 FIVAR domain Methyltransf_25 PF13649.6 gi|383320714|ref|YP_005381555.1| - 0.15 12.8 0.0 46 4.8 0.0 3.0 2 0 0 2 2 2 0 Methyltransferase domain FliD_C PF07195.12 gi|383320714|ref|YP_005381555.1| - 0.23 10.9 3.7 1.5 8.2 0.2 3.5 3 1 0 3 3 3 0 Flagellar hook-associated protein 2 C-terminus DUF2408 PF10303.9 gi|383320714|ref|YP_005381555.1| - 7.5 7.1 9.5 27 5.3 1.3 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2408) cwf21 PF08312.12 gi|383320714|ref|YP_005381555.1| - 9.4 6.5 7.8 0.84 9.8 0.9 2.8 2 0 0 2 2 2 0 cwf21 domain DUF4011 PF13195.6 gi|383320715|ref|YP_005381556.1| - 1.6e-40 138.7 8.2 1.6e-40 138.7 8.2 3.2 2 1 0 2 2 2 1 Protein of unknown function (DUF4011) MTES_1575 PF18741.1 gi|383320715|ref|YP_005381556.1| - 3.2e-34 117.0 0.1 1.2e-33 115.2 0.1 2.1 1 0 0 1 1 1 1 REase_MTES_1575 AAA_11 PF13086.6 gi|383320715|ref|YP_005381556.1| - 2.8e-15 56.8 2.1 1.1e-07 31.9 0.0 3.6 3 0 0 3 3 3 2 AAA domain AAA_12 PF13087.6 gi|383320715|ref|YP_005381556.1| - 1.8e-14 53.8 0.2 1.3e-13 51.1 0.2 2.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|383320715|ref|YP_005381556.1| - 2.5e-08 34.4 0.0 0.00017 21.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|383320715|ref|YP_005381556.1| - 5.4e-06 25.9 0.1 0.0056 16.0 0.0 3.9 4 0 0 4 4 4 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|383320715|ref|YP_005381556.1| - 8.4e-06 25.6 0.0 0.0055 16.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|383320715|ref|YP_005381556.1| - 0.00073 19.3 0.1 0.64 9.7 0.0 2.8 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase IstB_IS21 PF01695.17 gi|383320715|ref|YP_005381556.1| - 0.0076 16.0 0.0 0.024 14.4 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein Helicase_RecD PF05127.14 gi|383320715|ref|YP_005381556.1| - 0.015 15.1 0.0 0.098 12.5 0.0 2.2 2 0 0 2 2 2 0 Helicase GvpD PF07088.11 gi|383320715|ref|YP_005381556.1| - 0.027 13.1 0.0 0.051 12.2 0.0 1.3 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_22 PF13401.6 gi|383320715|ref|YP_005381556.1| - 0.045 14.0 0.3 0.88 9.8 0.0 3.3 4 0 0 4 4 3 0 AAA domain RAP PF08373.10 gi|383320715|ref|YP_005381556.1| - 0.064 13.4 0.1 0.064 13.4 0.1 3.2 4 0 0 4 4 3 0 RAP domain AAA_16 PF13191.6 gi|383320715|ref|YP_005381556.1| - 0.066 13.6 0.0 0.17 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain DUF559 PF04480.12 gi|383320715|ref|YP_005381556.1| - 0.066 13.1 0.0 0.2 11.5 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF559) DUF2935 PF11155.8 gi|383320715|ref|YP_005381556.1| - 0.24 11.7 5.0 11 6.4 1.1 4.0 2 1 0 2 2 2 0 Domain of unknown function (DUF2935) GGACT PF06094.12 gi|383320717|ref|YP_005381558.1| - 3.3e-17 63.2 0.1 3.7e-17 63.1 0.1 1.0 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 gi|383320717|ref|YP_005381558.1| - 0.00083 19.7 0.0 0.0012 19.2 0.0 1.3 1 0 0 1 1 1 1 AIG2-like family DUF473 PF04322.12 gi|383320718|ref|YP_005381559.1| - 1.1e-33 115.5 0.0 1.3e-33 115.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.9 gi|383320719|ref|YP_005381560.1| - 4.8e-41 141.1 0.0 5.5e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF5611 PF18446.1 gi|383320720|ref|YP_005381561.1| - 2e-33 115.3 1.3 2.3e-33 115.1 1.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) RIO1 PF01163.22 gi|383320721|ref|YP_005381562.1| - 7.7e-45 152.8 0.0 1.1e-44 152.3 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|383320721|ref|YP_005381562.1| - 2.1e-24 85.6 0.1 3.5e-24 84.8 0.1 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|383320721|ref|YP_005381562.1| - 5.5e-05 23.2 0.1 0.0027 17.7 0.0 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family Rrf2 PF02082.20 gi|383320721|ref|YP_005381562.1| - 0.011 16.1 0.0 0.024 15.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator GerE PF00196.19 gi|383320721|ref|YP_005381562.1| - 0.054 13.1 0.0 0.18 11.4 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_5 PF01022.20 gi|383320721|ref|YP_005381562.1| - 0.083 12.8 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.12 gi|383320721|ref|YP_005381562.1| - 0.11 12.4 0.1 7.3 6.5 0.0 2.8 2 0 0 2 2 2 0 HTH DNA binding domain S-AdoMet_synt_C PF02773.16 gi|383320722|ref|YP_005381563.1| - 1.1e-70 235.9 0.8 3.5e-70 234.3 0.1 2.0 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.16 gi|383320722|ref|YP_005381563.1| - 4.2e-51 172.2 0.0 9.3e-51 171.1 0.0 1.6 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.20 gi|383320722|ref|YP_005381563.1| - 1.3e-44 150.9 1.5 3.3e-44 149.6 0.1 2.3 3 0 0 3 3 3 1 S-adenosylmethionine synthetase, N-terminal domain DisA_N PF02457.16 gi|383320723|ref|YP_005381564.1| - 8.5e-25 86.6 0.5 2.1e-24 85.4 0.1 1.8 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding PIN_12 PF16289.5 gi|383320723|ref|YP_005381564.1| - 0.094 13.2 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 PIN domain DZR PF12773.7 gi|383320724|ref|YP_005381565.1| - 0.0021 18.0 1.0 0.0025 17.8 1.0 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-HIT PF04438.16 gi|383320724|ref|YP_005381565.1| - 0.022 14.6 1.4 2 8.4 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-ribbon_3 PF13248.6 gi|383320724|ref|YP_005381565.1| - 0.023 14.1 0.9 3.2 7.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|383320724|ref|YP_005381565.1| - 0.039 13.6 1.5 0.039 13.6 1.5 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|383320724|ref|YP_005381565.1| - 0.046 13.5 3.2 1.3 8.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|383320724|ref|YP_005381565.1| - 0.067 12.8 1.7 4 7.1 0.2 2.1 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger DNA_RNApol_7kD PF03604.13 gi|383320724|ref|YP_005381565.1| - 0.098 12.4 2.2 0.99 9.1 2.2 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.11 gi|383320724|ref|YP_005381565.1| - 0.14 12.1 1.1 0.18 11.7 1.1 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|383320724|ref|YP_005381565.1| - 0.22 11.9 2.6 5 7.5 2.6 2.0 1 1 0 1 1 1 0 C1 domain Cript PF10235.9 gi|383320724|ref|YP_005381565.1| - 0.24 12.0 5.9 15 6.2 5.9 2.0 1 1 0 1 1 1 0 Microtubule-associated protein CRIPT YhfH PF14149.6 gi|383320724|ref|YP_005381565.1| - 0.81 9.7 5.5 4 7.5 0.6 2.1 2 0 0 2 2 2 0 YhfH-like protein Promethin PF16015.5 gi|383320725|ref|YP_005381566.1| - 0.005 16.7 15.9 0.005 16.7 15.9 3.4 2 1 0 3 3 3 1 Promethin Bac_luciferase PF00296.20 gi|383320726|ref|YP_005381567.1| - 6.8e-68 229.4 0.1 7.5e-68 229.3 0.1 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PAS_8 PF13188.7 gi|383320727|ref|YP_005381568.1| - 4.1e-17 61.8 0.3 2.4e-06 27.4 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_9 PF13426.7 gi|383320727|ref|YP_005381568.1| - 3.6e-16 59.3 4.2 3.6e-07 30.4 0.2 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|383320727|ref|YP_005381568.1| - 2.3e-12 47.2 0.0 0.0022 18.2 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|383320727|ref|YP_005381568.1| - 3.2e-11 43.2 0.0 3e-05 24.0 0.0 3.4 3 0 0 3 3 3 2 PAS fold HTH_IclR PF09339.10 gi|383320727|ref|YP_005381568.1| - 0.0044 16.8 0.0 0.0083 15.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TBPIP PF07106.13 gi|383320727|ref|YP_005381568.1| - 0.0045 16.9 0.1 0.031 14.2 0.0 2.5 2 0 0 2 2 2 1 TBPIP/Hop2 winged helix domain HTH_11 PF08279.12 gi|383320727|ref|YP_005381568.1| - 0.027 14.4 0.3 0.19 11.7 0.1 2.5 2 0 0 2 2 2 0 HTH domain MarR_2 PF12802.7 gi|383320727|ref|YP_005381568.1| - 0.037 13.9 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.20 gi|383320727|ref|YP_005381568.1| - 0.045 13.6 0.1 0.12 12.2 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|383320727|ref|YP_005381568.1| - 0.057 13.3 0.1 0.21 11.5 0.1 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|383320727|ref|YP_005381568.1| - 0.06 13.2 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 gi|383320727|ref|YP_005381568.1| - 0.12 12.0 0.3 0.94 9.1 0.1 2.5 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF977 PF06163.11 gi|383320727|ref|YP_005381568.1| - 0.13 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) zf-FCS PF06467.14 gi|383320728|ref|YP_005381569.1| - 0.00023 21.1 2.8 0.00063 19.6 2.8 1.7 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif VATC PF18716.1 gi|383320728|ref|YP_005381569.1| - 0.0021 17.9 2.9 0.0053 16.6 2.9 1.6 1 1 0 1 1 1 1 Vms1-associating treble clef domain zf-FLZ PF04570.14 gi|383320728|ref|YP_005381569.1| - 0.019 14.5 1.1 0.031 13.7 1.1 1.4 1 0 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 Sgf11 PF08209.11 gi|383320728|ref|YP_005381569.1| - 0.025 14.1 2.3 0.043 13.4 0.6 1.9 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF2256 PF10013.9 gi|383320728|ref|YP_005381569.1| - 0.73 10.0 6.0 6.6 6.9 6.0 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) His_biosynth PF00977.21 gi|383320729|ref|YP_005381570.1| - 1.5e-87 292.9 0.4 1.7e-87 292.7 0.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|383320729|ref|YP_005381570.1| - 2.2e-07 30.6 1.3 0.0075 15.7 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 gi|383320729|ref|YP_005381570.1| - 8.1e-07 28.4 0.3 0.00077 18.6 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|383320729|ref|YP_005381570.1| - 9.1e-06 25.2 0.6 0.0014 18.1 0.2 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|383320729|ref|YP_005381570.1| - 1.8e-05 24.2 0.4 0.068 12.5 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase ThiG PF05690.14 gi|383320729|ref|YP_005381570.1| - 2.4e-05 23.8 0.4 0.059 12.7 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|383320729|ref|YP_005381570.1| - 0.0002 20.5 1.7 0.05 12.6 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|383320729|ref|YP_005381570.1| - 0.0015 17.8 0.4 0.14 11.3 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.17 gi|383320729|ref|YP_005381570.1| - 0.032 13.7 1.0 0.051 13.0 0.1 1.8 3 0 0 3 3 3 0 PcrB family MazG PF03819.17 gi|383320730|ref|YP_005381571.1| - 9.9e-14 51.3 0.2 1.2e-13 51.0 0.2 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|383320730|ref|YP_005381571.1| - 5.8e-06 26.5 0.2 7.6e-06 26.1 0.2 1.2 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|383320730|ref|YP_005381571.1| - 0.00092 19.6 0.2 0.0011 19.3 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase zf-C2HE PF16278.5 gi|383320730|ref|YP_005381571.1| - 0.016 15.6 0.2 0.028 14.8 0.2 1.7 1 1 0 1 1 1 0 C2HE / C2H2 / C2HC zinc-binding finger MKRN1_C PF15815.5 gi|383320730|ref|YP_005381571.1| - 0.062 13.7 0.3 0.077 13.4 0.3 1.2 1 0 0 1 1 1 0 E3 ubiquitin-protein ligase makorin-1, C-terminal dUTPase_2 PF08761.11 gi|383320730|ref|YP_005381571.1| - 0.08 13.1 0.3 0.1 12.7 0.3 1.3 1 1 0 1 1 1 0 dUTPase DUF2070 PF09843.9 gi|383320731|ref|YP_005381572.1| - 0.2 9.9 17.8 0.26 9.5 17.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2207 PF09972.9 gi|383320731|ref|YP_005381572.1| - 0.38 9.5 8.9 2 7.1 0.4 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF5313 PF17240.2 gi|383320731|ref|YP_005381572.1| - 0.4 11.1 0.1 0.4 11.1 0.1 2.3 3 0 0 3 3 3 0 Family of unknown function (DUF5313) AA_permease_2 PF13520.6 gi|383320732|ref|YP_005381573.1| - 1.3e-30 106.6 55.3 1.5e-30 106.4 55.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|383320732|ref|YP_005381573.1| - 1.1e-20 73.7 51.9 1.8e-20 73.0 51.9 1.3 1 0 0 1 1 1 1 Amino acid permease DUF3493 PF11998.8 gi|383320732|ref|YP_005381573.1| - 0.052 13.7 0.4 0.052 13.7 0.4 3.1 3 2 1 4 4 4 0 Low psii accumulation1 / Rep27 Trm112p PF03966.16 gi|383320734|ref|YP_005381575.1| - 2.7e-09 37.5 2.9 5.9e-09 36.4 2.9 1.5 1 1 0 1 1 1 1 Trm112p-like protein Elf1 PF05129.13 gi|383320734|ref|YP_005381575.1| - 0.0011 19.0 0.2 0.0011 18.9 0.2 1.0 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Prim_Zn_Ribbon PF08273.12 gi|383320734|ref|YP_005381575.1| - 0.011 16.0 0.4 0.014 15.7 0.4 1.2 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.6 gi|383320734|ref|YP_005381575.1| - 0.012 16.0 1.7 0.013 15.9 1.7 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|383320734|ref|YP_005381575.1| - 0.03 14.3 0.4 0.037 14.0 0.4 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|383320734|ref|YP_005381575.1| - 0.096 12.7 2.9 0.2 11.7 3.0 1.5 1 1 0 1 1 1 0 zinc-ribbons Cys_rich_KTR PF14205.6 gi|383320734|ref|YP_005381575.1| - 0.14 12.0 2.5 0.26 11.1 2.5 1.4 1 1 0 1 1 1 0 Cysteine-rich KTR Adenylsucc_synt PF00709.21 gi|383320735|ref|YP_005381576.1| - 1.3e-78 264.8 1.1 1.9e-39 135.8 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase HTH_5 PF01022.20 gi|383320736|ref|YP_005381577.1| - 1.2e-19 69.9 0.2 9.4e-19 67.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|383320736|ref|YP_005381577.1| - 1.4e-10 41.1 0.0 5.6e-10 39.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|383320736|ref|YP_005381577.1| - 0.097 12.7 0.0 0.21 11.6 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|383320736|ref|YP_005381577.1| - 0.11 12.4 0.1 2.2 8.2 0.0 2.1 2 0 0 2 2 2 0 MarR family Cdc6_C PF09079.11 gi|383320736|ref|YP_005381577.1| - 0.15 12.1 0.1 0.28 11.2 0.0 1.6 1 1 1 2 2 2 0 CDC6, C terminal winged helix domain PaaX PF07848.12 gi|383320736|ref|YP_005381577.1| - 0.15 12.3 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein Methyltransf_31 PF13847.6 gi|383320737|ref|YP_005381578.1| - 6.6e-30 103.9 0.0 9.6e-30 103.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383320737|ref|YP_005381578.1| - 4.9e-21 75.3 0.1 1.5e-20 73.7 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|383320737|ref|YP_005381578.1| - 5.8e-19 68.6 0.0 1.3e-18 67.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|383320737|ref|YP_005381578.1| - 1.1e-17 64.2 0.0 2.1e-17 63.3 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|383320737|ref|YP_005381578.1| - 9.7e-12 45.0 0.0 2.4e-11 43.7 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|383320737|ref|YP_005381578.1| - 2e-11 44.0 0.2 1.4e-10 41.3 0.1 2.1 1 1 1 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|383320737|ref|YP_005381578.1| - 3.3e-08 34.2 0.0 8.6e-08 32.8 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain PrmA PF06325.13 gi|383320737|ref|YP_005381578.1| - 0.00011 21.7 0.0 0.00017 21.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_9 PF08003.11 gi|383320737|ref|YP_005381578.1| - 0.00052 19.0 0.0 0.0016 17.4 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_2 PF00891.18 gi|383320737|ref|YP_005381578.1| - 0.00058 19.2 0.0 0.00081 18.8 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_8 PF05148.15 gi|383320737|ref|YP_005381578.1| - 0.0026 17.7 0.1 0.005 16.7 0.1 1.4 1 0 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.14 gi|383320737|ref|YP_005381578.1| - 0.0026 17.3 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|383320737|ref|YP_005381578.1| - 0.0037 16.6 0.0 0.0056 16.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|383320737|ref|YP_005381578.1| - 0.033 14.2 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.16 gi|383320737|ref|YP_005381578.1| - 0.052 12.1 0.0 0.067 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase NNMT_PNMT_TEMT PF01234.17 gi|383320737|ref|YP_005381578.1| - 0.098 11.8 0.1 2.6 7.2 0.0 2.1 1 1 1 2 2 2 0 NNMT/PNMT/TEMT family UPF0020 PF01170.18 gi|383320737|ref|YP_005381578.1| - 0.11 12.2 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DnaJ PF00226.31 gi|383320738|ref|YP_005381579.1| - 1.4e-24 86.0 1.6 2.7e-24 85.1 1.6 1.5 1 0 0 1 1 1 1 DnaJ domain DUF3410 PF11890.8 gi|383320738|ref|YP_005381579.1| - 0.024 14.4 0.5 0.052 13.4 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3410) DUF2924 PF11149.8 gi|383320738|ref|YP_005381579.1| - 0.029 14.7 0.1 0.036 14.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2924) GIT1_C PF12205.8 gi|383320738|ref|YP_005381579.1| - 0.18 11.9 0.0 7.1 6.8 0.0 2.1 1 1 1 2 2 2 0 G protein-coupled receptor kinase-interacting protein 1 C term DUF1467 PF07330.12 gi|383320738|ref|YP_005381579.1| - 0.48 10.4 2.8 0.92 9.5 2.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1467) CxxCxxCC PF03692.15 gi|383320739|ref|YP_005381580.1| - 0.00046 20.8 3.1 0.00061 20.4 2.8 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain SnoaL PF07366.12 gi|383320740|ref|YP_005381581.1| - 3.7e-33 114.0 0.0 4.5e-33 113.7 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|383320740|ref|YP_005381581.1| - 3.4e-19 69.4 0.0 4.5e-19 69.0 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|383320740|ref|YP_005381581.1| - 0.069 13.6 0.0 0.13 12.7 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4440) SnoaL_4 PF13577.6 gi|383320740|ref|YP_005381581.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain ATP-synt_D PF01813.17 gi|383320742|ref|YP_005381583.1| - 3e-49 167.5 10.1 3.5e-49 167.3 10.1 1.0 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.25 gi|383320743|ref|YP_005381584.1| - 1.7e-63 214.1 0.0 2.2e-63 213.8 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|383320743|ref|YP_005381584.1| - 1.2e-10 41.8 0.3 2.7e-10 40.6 0.3 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|383320743|ref|YP_005381584.1| - 8.5e-08 32.2 0.2 2.4e-07 30.8 0.2 1.7 1 0 0 1 1 1 1 HAS barrel domain DUF1887 PF09002.11 gi|383320743|ref|YP_005381584.1| - 0.083 11.6 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) ATP-synt_ab PF00006.25 gi|383320744|ref|YP_005381585.1| - 1.2e-89 299.6 0.0 2.9e-89 298.3 0.0 1.6 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|383320744|ref|YP_005381585.1| - 1.5e-39 134.6 0.0 3.2e-39 133.5 0.0 1.6 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|383320744|ref|YP_005381585.1| - 3.7e-15 56.2 2.0 1.3e-14 54.4 2.0 2.0 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|383320744|ref|YP_005381585.1| - 0.0031 17.4 0.2 0.021 14.8 0.0 2.3 3 0 0 3 3 3 1 RnfC Barrel sandwich hybrid domain AAA_22 PF13401.6 gi|383320744|ref|YP_005381585.1| - 0.15 12.3 0.0 0.27 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP-synt_F PF01990.17 gi|383320745|ref|YP_005381586.1| - 5.1e-18 65.2 0.0 6.1e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit LUD_dom PF02589.15 gi|383320745|ref|YP_005381586.1| - 0.012 15.3 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 0 LUD domain vATP-synt_AC39 PF01992.16 gi|383320746|ref|YP_005381587.1| - 1.4e-75 254.9 2.5 1.6e-75 254.7 2.5 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit Pox_A_type_inc PF04508.12 gi|383320746|ref|YP_005381587.1| - 0.68 9.9 3.3 0.78 9.7 0.7 2.3 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat vATP-synt_E PF01991.18 gi|383320747|ref|YP_005381588.1| - 2.7e-16 59.6 4.0 1.3e-15 57.4 4.0 1.8 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DivIVA PF05103.13 gi|383320747|ref|YP_005381588.1| - 0.79 9.8 5.6 1.3 9.1 5.6 1.5 1 1 0 1 1 1 0 DivIVA protein Clusterin PF01093.17 gi|383320747|ref|YP_005381588.1| - 1.1 8.2 4.0 1.8 7.6 4.0 1.3 1 0 0 1 1 1 0 Clusterin ATP-synt_B PF00430.18 gi|383320747|ref|YP_005381588.1| - 5.6 7.1 14.5 0.4 10.8 9.4 1.7 2 1 0 2 2 2 0 ATP synthase B/B' CF(0) ATP-synt_C PF00137.21 gi|383320748|ref|YP_005381589.1| - 1.7e-12 47.5 12.3 2.2e-12 47.2 12.3 1.1 1 0 0 1 1 1 1 ATP synthase subunit C LSM PF01423.22 gi|383320750|ref|YP_005381591.1| - 1.5e-24 85.5 0.1 1.6e-24 85.3 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|383320750|ref|YP_005381591.1| - 0.00056 20.0 0.0 0.00056 20.0 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.19 gi|383320751|ref|YP_005381592.1| - 4.1e-21 74.9 9.8 4.5e-21 74.7 9.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-RRN7 PF11781.8 gi|383320751|ref|YP_005381592.1| - 0.32 10.7 4.2 1.2 8.8 1.0 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 YhfH PF14149.6 gi|383320751|ref|YP_005381592.1| - 2.1 8.4 5.9 2.9 7.9 0.8 2.1 1 1 1 2 2 2 0 YhfH-like protein DUF2688 PF10892.8 gi|383320751|ref|YP_005381592.1| - 4.6 6.8 7.2 0.44 10.0 2.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) GATase_7 PF13537.6 gi|383320752|ref|YP_005381593.1| - 1.5e-24 86.3 0.0 2.6e-24 85.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|383320752|ref|YP_005381593.1| - 1.8e-22 80.0 0.0 3.3e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|383320752|ref|YP_005381593.1| - 7.2e-07 28.9 0.1 1.6e-06 27.7 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|383320752|ref|YP_005381593.1| - 7.3e-07 28.4 0.0 1.2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pyridox_ox_2 PF12900.7 gi|383320753|ref|YP_005381594.1| - 1.9e-22 79.8 0.0 2.3e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|383320753|ref|YP_005381594.1| - 0.00011 22.4 0.0 0.00016 21.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DEAD PF00270.29 gi|383320755|ref|YP_005381596.1| - 1.3e-27 96.7 0.0 4.9e-27 94.8 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase HRDC PF00570.23 gi|383320755|ref|YP_005381596.1| - 4.3e-21 74.7 0.3 2.1e-18 66.1 0.0 3.5 3 0 0 3 3 3 1 HRDC domain Sec63 PF02889.16 gi|383320755|ref|YP_005381596.1| - 2.4e-14 53.1 0.0 3.8e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.15 gi|383320755|ref|YP_005381596.1| - 7.8e-11 42.3 0.0 1.3e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|383320755|ref|YP_005381596.1| - 6.4e-09 36.1 0.0 3.2e-08 33.9 0.0 2.1 1 1 0 1 1 1 1 Helicase conserved C-terminal domain NucS PF01939.16 gi|383320755|ref|YP_005381596.1| - 8.5e-08 31.8 0.0 2.5e-07 30.3 0.0 1.7 1 0 0 1 1 1 1 Endonuclease NucS HHH_5 PF14520.6 gi|383320755|ref|YP_005381596.1| - 0.00097 19.7 2.7 0.0016 19.0 0.6 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|383320755|ref|YP_005381596.1| - 0.01 15.6 0.0 6.2 6.7 0.0 2.7 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda AAA_22 PF13401.6 gi|383320755|ref|YP_005381596.1| - 0.012 15.9 0.0 0.035 14.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|383320755|ref|YP_005381596.1| - 0.019 14.0 0.0 0.038 13.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF4332 PF14229.6 gi|383320755|ref|YP_005381596.1| - 0.062 13.5 0.0 0.2 11.9 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) HHH PF00633.23 gi|383320755|ref|YP_005381596.1| - 0.14 12.1 0.7 14 5.8 0.1 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif DsbD PF02683.15 gi|383320756|ref|YP_005381597.1| - 6.6e-36 124.2 19.1 1.6e-35 123.0 19.1 1.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|383320756|ref|YP_005381597.1| - 1.3e-14 54.7 19.9 1.7e-14 54.3 19.9 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region UPF0016 PF01169.19 gi|383320756|ref|YP_005381597.1| - 0.0043 17.3 2.3 0.0043 17.3 2.3 2.9 3 1 0 3 3 3 1 Uncharacterized protein family UPF0016 Thioredoxin PF00085.20 gi|383320757|ref|YP_005381598.1| - 2.1e-11 43.7 0.1 4.7e-11 42.6 0.1 1.7 1 1 2 3 3 3 1 Thioredoxin TraF PF13728.6 gi|383320757|ref|YP_005381598.1| - 0.00058 19.8 0.1 0.001 19.0 0.1 1.4 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_4 PF13462.6 gi|383320757|ref|YP_005381598.1| - 0.0078 16.4 0.2 0.014 15.6 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|383320757|ref|YP_005381598.1| - 0.0089 16.5 0.1 0.078 13.4 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|383320757|ref|YP_005381598.1| - 0.021 14.2 0.2 0.17 11.2 0.0 1.9 2 0 0 2 2 2 0 OST3 / OST6 family, transporter family Redoxin PF08534.10 gi|383320757|ref|YP_005381598.1| - 0.056 13.2 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 Redoxin Orthopox_35kD PF02250.15 gi|383320757|ref|YP_005381598.1| - 0.16 11.7 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 35kD major secreted virus protein Metallophos PF00149.28 gi|383320758|ref|YP_005381599.1| - 3.8e-05 24.3 0.5 0.0022 18.5 0.0 2.2 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|383320758|ref|YP_005381599.1| - 0.0042 17.3 0.1 0.0074 16.5 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Me-amine-dh_H PF06433.11 gi|383320758|ref|YP_005381599.1| - 0.0047 15.9 0.0 0.0063 15.4 0.0 1.1 1 0 0 1 1 1 1 Methylamine dehydrogenase heavy chain (MADH) pXO2-72 PF17443.2 gi|383320758|ref|YP_005381599.1| - 0.15 12.3 0.0 0.34 11.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein pXO2-72 DEAD_assoc PF08494.11 gi|383320759|ref|YP_005381600.1| - 1.5e-49 168.4 0.1 2.5e-49 167.7 0.1 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|383320759|ref|YP_005381600.1| - 4e-32 111.4 0.0 1e-31 110.1 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|383320759|ref|YP_005381600.1| - 3.4e-17 62.8 0.0 1e-15 58.0 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|383320759|ref|YP_005381600.1| - 1.5e-06 28.3 0.0 5.6e-06 26.5 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|383320759|ref|YP_005381600.1| - 0.0017 18.7 0.0 0.0062 16.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|383320759|ref|YP_005381600.1| - 0.0078 16.5 0.3 0.11 12.8 0.0 3.0 3 1 0 3 3 3 1 AAA domain Med4 PF10018.9 gi|383320759|ref|YP_005381600.1| - 0.035 13.8 0.1 0.062 13.0 0.1 1.3 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 NapE PF06796.11 gi|383320760|ref|YP_005381601.1| - 0.35 10.4 2.2 0.65 9.6 2.2 1.3 1 0 0 1 1 1 0 Periplasmic nitrate reductase protein NapE MJ1316 PF04457.12 gi|383320761|ref|YP_005381602.1| - 1.7e-17 63.9 0.0 1.9e-17 63.7 0.0 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain OrfB_Zn_ribbon PF07282.11 gi|383320762|ref|YP_005381603.1| - 1.5e-24 85.7 0.5 1.5e-24 85.7 0.5 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|383320762|ref|YP_005381603.1| - 7.2e-06 26.2 0.1 1.6e-05 25.1 0.1 1.5 1 0 0 1 1 1 1 Probable transposase DZR PF12773.7 gi|383320762|ref|YP_005381603.1| - 0.009 16.0 0.5 0.019 15.0 0.5 1.4 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|383320762|ref|YP_005381603.1| - 0.011 15.7 0.5 0.031 14.3 0.1 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_2 PF03107.16 gi|383320762|ref|YP_005381603.1| - 0.031 14.6 0.4 0.063 13.6 0.4 1.4 1 0 0 1 1 1 0 C1 domain CIAPIN1 PF05093.13 gi|383320762|ref|YP_005381603.1| - 0.039 14.5 0.4 0.09 13.3 0.4 1.7 1 1 0 1 1 1 0 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis FAM76 PF16046.5 gi|383320762|ref|YP_005381603.1| - 0.35 10.2 6.1 0.061 12.7 1.0 2.1 2 0 0 2 2 2 0 FAM76 protein zinc_ribbon_2 PF13240.6 gi|383320762|ref|YP_005381603.1| - 0.93 9.3 8.3 11 5.9 0.4 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|383320762|ref|YP_005381603.1| - 2.9 7.4 7.9 28 4.3 7.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|383320762|ref|YP_005381603.1| - 4.6 7.2 6.3 28 4.8 0.1 3.7 4 0 0 4 4 4 0 zinc-ribbon domain UPF0547 PF10571.9 gi|383320762|ref|YP_005381603.1| - 7 6.8 8.7 2.8 8.1 1.2 2.6 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Y1_Tnp PF01797.16 gi|383320763|ref|YP_005381604.1| - 2.4e-36 124.5 0.1 2.7e-36 124.3 0.1 1.0 1 0 0 1 1 1 1 Transposase IS200 like BAT PF15915.5 gi|383320763|ref|YP_005381604.1| - 0.18 11.7 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 GAF and HTH_10 associated domain AdoMet_dc PF02675.15 gi|383320764|ref|YP_005381605.1| - 9e-17 61.3 0.0 9.8e-17 61.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase ResIII PF04851.15 gi|383320765|ref|YP_005381606.1| - 5.8e-20 72.0 0.0 1.1e-18 67.8 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|383320765|ref|YP_005381606.1| - 8.4e-20 71.0 0.1 1.3e-19 70.4 0.1 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase XPB_DRD PF18458.1 gi|383320765|ref|YP_005381606.1| - 1.5e-15 56.8 0.9 5.7e-15 54.9 0.9 2.0 2 0 0 2 2 2 1 Xeroderma pigmentosum group B helicase damage recognition domain Helicase_C PF00271.31 gi|383320765|ref|YP_005381606.1| - 1.5e-14 54.3 0.1 1.1e-13 51.4 0.0 2.4 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|383320765|ref|YP_005381606.1| - 0.00013 21.8 0.0 0.0022 17.8 0.0 2.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|383320765|ref|YP_005381606.1| - 0.028 14.6 0.0 2.9 8.0 0.0 2.5 2 0 0 2 2 2 0 Helicase C-terminal domain DUF790 PF05626.11 gi|383320766|ref|YP_005381607.1| - 2e-125 418.5 0.0 2.4e-125 418.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) PND PF17949.1 gi|383320766|ref|YP_005381607.1| - 0.098 12.9 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 FANCM pseudonuclease domain DUF1064 PF06356.11 gi|383320766|ref|YP_005381607.1| - 0.1 13.0 0.3 1.6 9.1 0.3 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1064) HTH_Tnp_ISL3 PF13542.6 gi|383320766|ref|YP_005381607.1| - 0.13 11.7 0.0 12 5.4 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 tRNA-synt_His PF13393.6 gi|383320767|ref|YP_005381608.1| - 1.6e-49 168.9 0.0 2e-49 168.5 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|383320767|ref|YP_005381608.1| - 8.7e-13 48.2 0.0 1.8e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|383320767|ref|YP_005381608.1| - 8.2e-09 35.7 0.0 1.3e-08 35.0 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|383320767|ref|YP_005381608.1| - 0.00014 21.4 0.0 0.00038 20.0 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) ArgJ PF01960.18 gi|383320768|ref|YP_005381609.1| - 4.3e-137 456.8 0.6 5.1e-137 456.6 0.6 1.0 1 0 0 1 1 1 1 ArgJ family CBS PF00571.28 gi|383320769|ref|YP_005381610.1| - 1e-32 112.3 8.4 6.1e-17 61.8 1.1 2.4 3 0 0 3 3 3 2 CBS domain Semialdhyde_dh PF01118.24 gi|383320770|ref|YP_005381611.1| - 3.7e-36 124.2 0.0 6.6e-36 123.4 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|383320770|ref|YP_005381611.1| - 7.3e-25 88.1 0.0 1.1e-24 87.6 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.17 gi|383320770|ref|YP_005381611.1| - 0.00018 22.0 0.0 0.00038 21.0 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|383320770|ref|YP_005381611.1| - 0.0081 17.0 0.0 0.49 11.2 0.0 2.4 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Epimerase PF01370.21 gi|383320770|ref|YP_005381611.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.5 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Staphylcoagulse PF04022.12 gi|383320770|ref|YP_005381611.1| - 2.7 7.6 5.1 2.7 7.6 0.8 2.8 3 0 0 3 3 3 0 Staphylocoagulase repeat CTP_transf_like PF01467.26 gi|383320771|ref|YP_005381612.1| - 5.4e-18 65.6 0.0 6.2e-18 65.4 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|383320771|ref|YP_005381612.1| - 0.18 11.7 0.0 0.37 10.7 0.0 1.6 2 0 0 2 2 2 0 FAD synthetase Prok-JAB PF14464.6 gi|383320772|ref|YP_005381613.1| - 3e-10 39.9 0.0 3.7e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Response_reg PF00072.24 gi|383320773|ref|YP_005381614.1| - 6.4e-17 61.7 0.1 7.9e-17 61.4 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Phosphodiest PF01663.22 gi|383320774|ref|YP_005381615.1| - 1.5e-23 84.0 0.0 5.6e-22 78.8 0.0 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|383320774|ref|YP_005381615.1| - 0.0085 15.5 0.1 0.14 11.6 0.1 2.7 1 1 0 1 1 1 1 Sulfatase PglZ PF08665.12 gi|383320774|ref|YP_005381615.1| - 0.011 15.8 0.0 0.13 12.4 0.0 2.1 2 0 0 2 2 2 0 PglZ domain tRNA-synt_2b PF00587.25 gi|383320775|ref|YP_005381616.1| - 1.7e-33 116.1 0.0 3e-33 115.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|383320775|ref|YP_005381616.1| - 1.8e-31 108.6 6.5 2.9e-31 107.9 6.5 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain BLOC1_2 PF10046.9 gi|383320775|ref|YP_005381616.1| - 0.0028 17.9 0.1 0.011 16.0 0.2 1.9 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cauli_AT PF03233.13 gi|383320775|ref|YP_005381616.1| - 0.0062 16.5 0.9 0.011 15.7 0.9 1.3 1 0 0 1 1 1 1 Aphid transmission protein TMF_DNA_bd PF12329.8 gi|383320775|ref|YP_005381616.1| - 0.03 14.3 2.9 0.063 13.3 2.9 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF5082 PF16888.5 gi|383320775|ref|YP_005381616.1| - 0.075 13.3 1.4 0.12 12.6 1.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) UPF0242 PF06785.11 gi|383320775|ref|YP_005381616.1| - 0.11 12.6 1.4 0.2 11.8 1.4 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus TPR_MLP1_2 PF07926.12 gi|383320775|ref|YP_005381616.1| - 0.12 12.5 4.5 0.26 11.4 4.5 1.5 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Colipase-like PF15083.6 gi|383320776|ref|YP_005381617.1| - 0.0021 18.2 13.9 0.0048 17.0 13.9 1.6 1 1 0 1 1 1 1 Colipase-like TrmO PF01980.16 gi|383320777|ref|YP_005381618.1| - 9.4e-30 103.3 0.0 1.1e-29 103.0 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O dUTPase PF00692.19 gi|383320778|ref|YP_005381619.1| - 5.3e-14 52.0 0.0 7.7e-14 51.5 0.0 1.2 1 0 0 1 1 1 1 dUTPase AhpC-TSA PF00578.21 gi|383320779|ref|YP_005381620.1| - 5.4e-24 84.5 0.0 7e-24 84.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|383320779|ref|YP_005381620.1| - 8.4e-16 58.0 0.0 1e-15 57.7 0.0 1.0 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 gi|383320779|ref|YP_005381620.1| - 7.3e-05 23.0 0.0 0.0001 22.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Glyco_tranf_2_3 PF13641.6 gi|383320780|ref|YP_005381621.1| - 7.4e-26 91.4 0.0 1e-25 91.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|383320780|ref|YP_005381621.1| - 9.3e-25 87.7 0.7 9.3e-25 87.7 0.7 1.8 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|383320780|ref|YP_005381621.1| - 4.1e-19 69.0 0.0 5.6e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|383320780|ref|YP_005381621.1| - 8.8e-15 54.6 0.0 1.4e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|383320780|ref|YP_005381621.1| - 0.007 15.9 0.0 0.033 13.6 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Chitin_synth_2 PF03142.15 gi|383320780|ref|YP_005381621.1| - 0.079 11.6 0.1 0.24 10.0 0.0 1.7 2 0 0 2 2 2 0 Chitin synthase DisA_N PF02457.16 gi|383320781|ref|YP_005381622.1| - 3.5e-17 62.1 0.3 5.7e-17 61.4 0.3 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding GtrA PF04138.14 gi|383320782|ref|YP_005381623.1| - 1.8e-21 76.5 21.5 2.2e-21 76.3 21.5 1.1 1 0 0 1 1 1 1 GtrA-like protein GATase PF00117.28 gi|383320783|ref|YP_005381624.1| - 2.6e-24 86.1 0.0 2.9e-24 85.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|383320783|ref|YP_005381624.1| - 9.6e-07 28.8 0.0 3.1e-06 27.2 0.0 1.7 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|383320783|ref|YP_005381624.1| - 3.8e-06 26.6 0.2 8.1e-06 25.6 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|383320783|ref|YP_005381624.1| - 0.00024 20.9 1.1 0.003 17.3 1.1 2.1 1 1 0 1 1 1 1 Peptidase C26 PAPS_reduct PF01507.19 gi|383320784|ref|YP_005381625.1| - 1.9e-43 148.5 0.0 3.1e-43 147.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|383320784|ref|YP_005381625.1| - 1.5e-15 56.9 1.4 1.6e-15 56.8 0.2 1.7 2 0 0 2 2 1 1 PUA domain Fer4_10 PF13237.6 gi|383320784|ref|YP_005381625.1| - 2.8e-07 30.6 11.5 2.8e-07 30.6 11.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383320784|ref|YP_005381625.1| - 3.8e-07 30.2 7.5 3.8e-07 30.2 7.5 2.9 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383320784|ref|YP_005381625.1| - 1.6e-05 25.4 12.2 1.6e-05 25.4 12.2 2.5 4 0 0 4 4 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|383320784|ref|YP_005381625.1| - 2.3e-05 24.0 18.9 4.9e-05 23.0 7.2 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|383320784|ref|YP_005381625.1| - 9.7e-05 22.5 1.9 9.7e-05 22.5 1.9 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383320784|ref|YP_005381625.1| - 0.001 19.2 14.2 0.001 19.2 14.2 2.6 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383320784|ref|YP_005381625.1| - 0.0068 17.3 1.9 0.0068 17.3 1.9 3.2 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|383320784|ref|YP_005381625.1| - 0.0087 16.5 1.4 0.0087 16.5 1.4 4.3 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|383320784|ref|YP_005381625.1| - 0.035 14.9 7.6 0.53 11.2 0.5 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383320784|ref|YP_005381625.1| - 0.69 10.1 27.7 0.2 11.8 2.5 3.9 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383320784|ref|YP_005381625.1| - 2.1 8.5 27.4 0.23 11.6 6.6 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|383320784|ref|YP_005381625.1| - 5.9 7.5 11.4 9.5 6.9 1.6 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|383320784|ref|YP_005381625.1| - 6.9 7.2 23.2 0.58 10.7 1.5 3.5 3 1 2 5 5 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383320784|ref|YP_005381625.1| - 8.4 7.0 23.1 0.59 10.7 0.9 3.3 3 1 2 5 5 3 0 4Fe-4S dicluster domain Inhibitor_I42 PF09394.10 gi|383320785|ref|YP_005381626.1| - 1.2e-14 54.4 0.0 1.4e-14 54.3 0.0 1.0 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 Cpn60_TCP1 PF00118.24 gi|383320786|ref|YP_005381627.1| - 9.5e-185 614.9 19.2 1.1e-184 614.7 19.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Isochorismatase PF00857.20 gi|383320787|ref|YP_005381628.1| - 2.8e-29 102.5 0.1 4.8e-29 101.8 0.1 1.4 1 1 0 1 1 1 1 Isochorismatase family DUF5612 PF18462.1 gi|383320788|ref|YP_005381629.1| - 9.5e-74 245.9 3.3 9.5e-74 245.9 3.3 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|383320788|ref|YP_005381629.1| - 2.9e-13 49.3 0.0 4.5e-12 45.5 0.0 2.5 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|383320788|ref|YP_005381629.1| - 3.1e-06 27.7 0.0 8.5e-06 26.3 0.0 1.8 1 0 0 1 1 1 1 ACT domain Peripla_BP_1 PF00532.21 gi|383320788|ref|YP_005381629.1| - 0.049 13.1 0.0 0.11 11.9 0.0 1.6 1 1 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family DUF5118 PF17162.4 gi|383320788|ref|YP_005381629.1| - 0.051 13.4 1.8 0.68 9.8 0.1 3.3 3 1 1 4 4 4 0 Domain of unknown function (DUF5118) DUF1178 PF06676.11 gi|383320788|ref|YP_005381629.1| - 0.054 13.9 1.0 0.12 12.8 0.1 2.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1178) ACT_6 PF13740.6 gi|383320788|ref|YP_005381629.1| - 0.062 13.3 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 ACT domain Transketolase_C PF02780.20 gi|383320788|ref|YP_005381629.1| - 0.078 12.9 0.4 0.31 10.9 0.4 1.9 1 1 0 1 1 1 0 Transketolase, C-terminal domain Peripla_BP_4 PF13407.6 gi|383320788|ref|YP_005381629.1| - 0.099 12.2 0.1 0.32 10.5 0.1 1.9 1 1 0 1 1 1 0 Periplasmic binding protein domain Radical_SAM PF04055.21 gi|383320788|ref|YP_005381629.1| - 0.15 12.5 0.0 0.65 10.4 0.0 2.1 2 1 0 2 2 2 0 Radical SAM superfamily Saccharop_dh_N PF04455.12 gi|383320789|ref|YP_005381630.1| - 1.6e-38 131.1 0.0 3.4e-38 130.1 0.0 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|383320789|ref|YP_005381630.1| - 1.1e-05 25.2 0.5 0.0021 17.8 0.1 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|383320789|ref|YP_005381630.1| - 0.011 15.0 0.6 0.093 12.0 0.0 2.3 1 1 1 2 2 2 0 Deoxyhypusine synthase DUF5403 PF17395.2 gi|383320789|ref|YP_005381630.1| - 0.032 14.5 0.3 0.23 11.8 0.1 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5403) CDP-OH_P_transf PF01066.21 gi|383320790|ref|YP_005381631.1| - 2e-16 60.5 1.9 2e-16 60.5 1.9 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Flavodoxin_5 PF12724.7 gi|383320791|ref|YP_005381632.1| - 6e-06 26.6 0.0 7e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|383320791|ref|YP_005381632.1| - 0.027 14.1 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin domain TetR_N PF00440.23 gi|383320792|ref|YP_005381633.1| - 1e-15 57.2 0.1 1.7e-15 56.6 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|383320792|ref|YP_005381633.1| - 0.00054 20.1 0.0 0.0013 18.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_23 PF13384.6 gi|383320792|ref|YP_005381633.1| - 0.008 16.0 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|383320792|ref|YP_005381633.1| - 0.023 14.4 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|383320792|ref|YP_005381633.1| - 0.085 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|383320792|ref|YP_005381633.1| - 0.13 12.3 0.1 0.61 10.1 0.0 2.1 2 1 1 3 3 3 0 Winged helix-turn helix HATPase_c PF02518.26 gi|383320793|ref|YP_005381634.1| - 2.1e-16 60.4 0.0 5e-16 59.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|383320793|ref|YP_005381634.1| - 5.1e-10 39.5 0.1 2.8e-09 37.1 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|383320793|ref|YP_005381634.1| - 2.3e-08 33.8 0.0 5.7e-08 32.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|383320793|ref|YP_005381634.1| - 2.7e-08 33.8 0.0 5e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|383320793|ref|YP_005381634.1| - 5.6e-08 33.0 0.1 2.2e-07 31.1 0.0 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|383320793|ref|YP_005381634.1| - 0.00033 20.6 0.0 0.00073 19.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 gi|383320793|ref|YP_005381634.1| - 0.01 16.1 0.0 0.026 14.8 0.0 1.7 2 0 0 2 2 2 0 PAS fold SIMPL PF04402.14 gi|383320793|ref|YP_005381634.1| - 0.022 15.2 0.0 0.061 13.8 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF541) PAS_3 PF08447.12 gi|383320794|ref|YP_005381635.1| - 3.9e-27 94.4 0.1 5.8e-15 55.4 0.0 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|383320794|ref|YP_005381635.1| - 3.2e-16 59.8 0.0 9.2e-16 58.3 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|383320794|ref|YP_005381635.1| - 9.2e-11 41.9 0.0 1e-05 25.7 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|383320794|ref|YP_005381635.1| - 6.7e-09 35.8 0.0 4.5e-05 23.4 0.0 2.9 2 1 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|383320794|ref|YP_005381635.1| - 1e-08 35.4 0.1 1.4e-05 25.3 0.0 2.7 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|383320794|ref|YP_005381635.1| - 6.3e-07 29.3 0.0 3.3e-06 27.0 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|383320794|ref|YP_005381635.1| - 4.6e-05 23.4 0.0 0.0001 22.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HEAT_2 PF13646.6 gi|383320795|ref|YP_005381636.1| - 5.3e-10 39.6 0.0 5.6e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.16 gi|383320795|ref|YP_005381636.1| - 8.7e-07 29.0 0.4 9.1e-06 25.9 0.0 2.2 2 0 0 2 2 2 1 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|383320795|ref|YP_005381636.1| - 6.1e-05 22.9 0.0 0.064 13.6 0.0 2.3 2 0 0 2 2 2 2 HEAT repeat Adaptin_N PF01602.20 gi|383320795|ref|YP_005381636.1| - 0.0098 14.5 0.0 0.011 14.4 0.0 1.0 1 0 0 1 1 1 1 Adaptin N terminal region Arm PF00514.23 gi|383320795|ref|YP_005381636.1| - 0.0099 15.9 0.0 0.022 14.8 0.0 1.6 1 1 0 1 1 1 1 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|383320795|ref|YP_005381636.1| - 0.023 14.8 0.0 0.025 14.6 0.0 1.1 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|383320795|ref|YP_005381636.1| - 0.1 13.1 0.0 1 9.9 0.0 2.1 1 1 1 2 2 2 0 HEAT-like repeat N6_N4_Mtase PF01555.18 gi|383320796|ref|YP_005381637.1| - 4.8e-30 105.0 0.1 4.7e-21 75.6 0.0 2.1 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|383320796|ref|YP_005381637.1| - 0.00027 20.7 0.0 0.0046 16.7 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|383320796|ref|YP_005381637.1| - 0.0015 18.2 0.0 0.0024 17.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MethyltransfD12 PF02086.15 gi|383320796|ref|YP_005381637.1| - 0.0019 17.9 0.0 0.0034 17.1 0.0 1.5 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_25 PF13649.6 gi|383320796|ref|YP_005381637.1| - 0.0043 17.7 0.0 0.014 16.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383320796|ref|YP_005381637.1| - 0.058 13.2 0.0 0.24 11.2 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain MvaI_BcnI PF15515.6 gi|383320797|ref|YP_005381638.1| - 9.8e-61 205.5 0.0 2.5e-60 204.2 0.0 1.6 1 1 0 1 1 1 1 MvaI/BcnI restriction endonuclease family HSP20 PF00011.21 gi|383320797|ref|YP_005381638.1| - 0.017 15.2 0.0 0.038 14.1 0.0 1.5 1 0 0 1 1 1 0 Hsp20/alpha crystallin family TOPRIM_C PF16898.5 gi|383320797|ref|YP_005381638.1| - 0.083 13.2 0.1 0.17 12.1 0.0 1.5 2 0 0 2 2 2 0 C-terminal associated domain of TOPRIM HTH_24 PF13412.6 gi|383320799|ref|YP_005381640.1| - 2.1e-14 52.8 0.0 3.8e-14 52.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|383320799|ref|YP_005381640.1| - 3.2e-12 46.1 0.0 4.8e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|383320799|ref|YP_005381640.1| - 2.5e-05 24.2 0.0 5e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|383320799|ref|YP_005381640.1| - 6.9e-05 22.6 0.0 0.00024 20.9 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|383320799|ref|YP_005381640.1| - 0.00026 20.8 0.0 0.00058 19.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|383320799|ref|YP_005381640.1| - 0.00028 20.8 0.0 0.00056 19.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain AsnC_trans_reg PF01037.21 gi|383320799|ref|YP_005381640.1| - 0.00028 20.8 0.0 0.0015 18.5 0.0 1.9 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain MarR PF01047.22 gi|383320799|ref|YP_005381640.1| - 0.00045 20.1 0.0 0.00084 19.2 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|383320799|ref|YP_005381640.1| - 0.0018 18.4 0.3 0.12 12.6 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|383320799|ref|YP_005381640.1| - 0.0027 17.6 0.0 0.0059 16.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|383320799|ref|YP_005381640.1| - 0.006 16.9 0.1 0.01 16.1 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|383320799|ref|YP_005381640.1| - 0.0079 15.8 0.0 0.018 14.7 0.0 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 gi|383320799|ref|YP_005381640.1| - 0.01 15.7 0.0 0.62 10.0 0.0 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|383320799|ref|YP_005381640.1| - 0.012 15.4 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|383320799|ref|YP_005381640.1| - 0.034 13.7 0.0 0.061 12.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Mga PF08280.11 gi|383320799|ref|YP_005381640.1| - 0.034 14.2 0.0 0.06 13.4 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_1 PF00126.27 gi|383320799|ref|YP_005381640.1| - 0.057 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 gi|383320799|ref|YP_005381640.1| - 0.095 12.8 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|383320799|ref|YP_005381640.1| - 0.11 12.4 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_10 PF04967.12 gi|383320799|ref|YP_005381640.1| - 0.12 12.2 0.0 0.47 10.3 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain HTH_3 PF01381.22 gi|383320799|ref|YP_005381640.1| - 0.13 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_Tnp_ISL3 PF13542.6 gi|383320799|ref|YP_005381640.1| - 0.14 11.6 0.0 0.29 10.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 SDH_sah PF01972.16 gi|383320800|ref|YP_005381641.1| - 4e-111 370.6 0.9 4.7e-111 370.4 0.9 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|383320800|ref|YP_005381641.1| - 8.4e-05 22.5 0.0 0.00017 21.5 0.0 1.5 1 0 0 1 1 1 1 Clp protease Peptidase_S49 PF01343.18 gi|383320800|ref|YP_005381641.1| - 0.0018 18.3 0.0 0.0035 17.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase family S49 ECH_1 PF00378.20 gi|383320800|ref|YP_005381641.1| - 0.08 12.2 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase Fas_alpha_ACP PF18325.1 gi|383320800|ref|YP_005381641.1| - 0.11 12.8 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 Fatty acid synthase subunit alpha Acyl carrier domain Ammonium_transp PF00909.21 gi|383320801|ref|YP_005381642.1| - 1.1e-128 429.3 36.9 1.3e-128 429.1 36.9 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|383320802|ref|YP_005381643.1| - 6.6e-36 123.0 1.2 7.3e-36 122.8 1.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|383320802|ref|YP_005381643.1| - 0.033 14.4 0.6 7.1 6.9 0.1 2.9 1 1 1 2 2 2 0 Cyclic-di-AMP receptor Ammonium_transp PF00909.21 gi|383320803|ref|YP_005381644.1| - 4.4e-124 414.2 42.8 5.1e-124 414.0 42.8 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|383320804|ref|YP_005381645.1| - 5.1e-42 142.6 3.7 5.7e-42 142.5 3.7 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|383320804|ref|YP_005381645.1| - 0.04 14.1 1.5 0.67 10.2 1.5 2.2 1 1 0 1 1 1 0 Cyclic-di-AMP receptor CofC PF01983.16 gi|383320805|ref|YP_005381646.1| - 3.8e-51 173.3 0.2 4.6e-51 173.1 0.2 1.1 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|383320805|ref|YP_005381646.1| - 0.00017 22.0 0.0 0.00025 21.4 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Thi4 PF01946.17 gi|383320806|ref|YP_005381647.1| - 1.4e-80 269.9 1.4 1.7e-80 269.7 1.4 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|383320806|ref|YP_005381647.1| - 1.4e-10 41.1 1.6 1.8e-10 40.8 1.6 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|383320806|ref|YP_005381647.1| - 9.8e-10 38.5 0.4 2.7e-09 37.1 0.4 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|383320806|ref|YP_005381647.1| - 1.4e-07 31.1 0.3 1.8e-07 30.7 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|383320806|ref|YP_005381647.1| - 1.1e-06 28.2 1.2 1.2e-06 28.1 1.2 1.3 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|383320806|ref|YP_005381647.1| - 9e-06 24.6 0.3 1.3e-05 24.1 0.3 1.4 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|383320806|ref|YP_005381647.1| - 1.4e-05 24.4 3.5 5.9e-05 22.3 0.9 2.1 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|383320806|ref|YP_005381647.1| - 1.6e-05 24.7 10.2 8.4e-05 22.3 3.7 2.4 1 1 1 3 3 3 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|383320806|ref|YP_005381647.1| - 0.00014 21.4 0.5 0.00022 20.6 0.2 1.4 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|383320806|ref|YP_005381647.1| - 0.00014 22.3 0.9 0.00035 21.1 0.9 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|383320806|ref|YP_005381647.1| - 0.002 17.3 1.0 0.002 17.3 1.0 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|383320806|ref|YP_005381647.1| - 0.0066 16.5 0.7 0.0066 16.5 0.7 1.7 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|383320806|ref|YP_005381647.1| - 0.0072 15.6 1.3 0.013 14.8 1.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|383320806|ref|YP_005381647.1| - 0.044 12.6 1.2 0.055 12.3 0.5 1.5 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|383320806|ref|YP_005381647.1| - 0.39 9.7 2.7 0.62 9.0 0.7 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein DUF1297 PF06973.12 gi|383320807|ref|YP_005381648.1| - 1e-76 256.7 0.0 1.4e-76 256.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|383320807|ref|YP_005381648.1| - 8.8e-47 158.1 0.0 1.5e-46 157.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) DUF4010 PF13194.6 gi|383320808|ref|YP_005381649.1| - 4e-52 177.0 23.0 4e-52 177.0 23.0 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|383320808|ref|YP_005381649.1| - 8.4e-23 81.0 10.7 8.4e-23 81.0 10.7 3.9 2 1 1 3 3 3 1 MgtC family Cyclophil_like PF04126.13 gi|383320808|ref|YP_005381649.1| - 0.14 12.0 0.1 0.35 10.7 0.0 1.6 2 0 0 2 2 2 0 Cyclophilin-like DUF5350 PF17299.2 gi|383320809|ref|YP_005381650.1| - 7.7e-28 96.8 1.6 9.4e-28 96.5 1.6 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5350) eIF-5_eIF-2B PF01873.17 gi|383320810|ref|YP_005381651.1| - 7.3e-36 122.6 0.0 1.4e-35 121.7 0.0 1.4 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|383320810|ref|YP_005381651.1| - 2.2e-13 50.0 1.4 5.7e-13 48.6 1.4 1.6 1 0 0 1 1 1 1 TRAM domain Zn-ribbon_8 PF09723.10 gi|383320810|ref|YP_005381651.1| - 0.055 13.6 0.5 0.11 12.6 0.5 1.5 1 0 0 1 1 1 0 Zinc ribbon domain ZF-HD_dimer PF04770.12 gi|383320810|ref|YP_005381651.1| - 0.077 13.3 0.2 1.2 9.6 0.1 2.4 3 0 0 3 3 3 0 ZF-HD protein dimerisation region Lar_restr_allev PF14354.6 gi|383320810|ref|YP_005381651.1| - 0.13 12.6 1.2 1.1 9.6 1.2 2.2 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.6 gi|383320810|ref|YP_005381651.1| - 0.18 11.7 1.0 6.7 6.7 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain TRAM_2 PF18693.1 gi|383320810|ref|YP_005381651.1| - 0.19 11.9 0.8 2.3 8.5 0.7 2.3 1 1 1 2 2 2 0 TRAM domain DNA_RNApol_7kD PF03604.13 gi|383320810|ref|YP_005381651.1| - 1.7 8.4 5.9 5 6.9 0.6 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TatD_DNase PF01026.21 gi|383320811|ref|YP_005381652.1| - 1.6e-21 76.9 0.0 2e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase IF2_N PF04760.15 gi|383320811|ref|YP_005381652.1| - 0.0043 16.8 0.0 0.053 13.3 0.0 2.4 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region Amidohydro_1 PF01979.20 gi|383320811|ref|YP_005381652.1| - 0.01 15.2 0.1 0.16 11.2 0.0 2.5 2 1 0 2 2 2 0 Amidohydrolase family Amidohydro_2 PF04909.14 gi|383320811|ref|YP_005381652.1| - 0.02 14.7 0.1 0.22 11.2 0.1 2.2 1 1 0 1 1 1 0 Amidohydrolase HTH_Bact PF18768.1 gi|383320812|ref|YP_005381653.1| - 0.0036 16.8 0.1 0.0084 15.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix bacterial domain HycI PF01750.18 gi|383320814|ref|YP_005381655.1| - 1.9e-29 102.1 0.4 2.2e-29 101.9 0.4 1.0 1 0 0 1 1 1 1 Hydrogenase maturation protease AA_kinase PF00696.28 gi|383320815|ref|YP_005381656.1| - 5e-32 111.4 1.4 9e-32 110.6 1.4 1.4 1 1 0 1 1 1 1 Amino acid kinase family Rhomboid PF01694.22 gi|383320817|ref|YP_005381658.1| - 1.2e-36 126.0 13.9 1.8e-36 125.4 13.9 1.3 1 0 0 1 1 1 1 Rhomboid family zf-AN1 PF01428.16 gi|383320817|ref|YP_005381658.1| - 4.8e-13 49.0 5.2 6.7e-13 48.6 5.2 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|383320817|ref|YP_005381658.1| - 0.0009 19.8 0.4 0.0009 19.8 0.4 2.1 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) zf-C2H2_4 PF13894.6 gi|383320817|ref|YP_005381658.1| - 7 7.8 6.4 3.4 8.8 1.9 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger HTH_11 PF08279.12 gi|383320818|ref|YP_005381659.1| - 6.7e-16 58.0 0.1 1.3e-15 57.1 0.1 1.5 1 0 0 1 1 1 1 HTH domain BPL_LplA_LipB PF03099.19 gi|383320818|ref|YP_005381659.1| - 8.5e-16 58.1 0.0 1.6e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|383320818|ref|YP_005381659.1| - 2.1e-11 43.5 0.1 3.7e-11 42.8 0.1 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.6 gi|383320818|ref|YP_005381659.1| - 6.6e-08 32.0 0.0 1.3e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding BPL_LplA_LipB_2 PF16917.5 gi|383320818|ref|YP_005381659.1| - 9.9e-06 25.2 0.1 1.6e-05 24.6 0.1 1.4 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family MarR PF01047.22 gi|383320818|ref|YP_005381659.1| - 0.0031 17.4 0.0 0.0072 16.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|383320818|ref|YP_005381659.1| - 0.0033 17.2 0.0 0.012 15.4 0.0 2.0 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|383320818|ref|YP_005381659.1| - 0.0035 17.5 0.0 0.0092 16.2 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|383320818|ref|YP_005381659.1| - 0.017 15.4 0.0 0.043 14.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator MutS_I PF01624.20 gi|383320818|ref|YP_005381659.1| - 0.037 14.3 0.0 0.069 13.4 0.0 1.5 1 0 0 1 1 1 0 MutS domain I HTH_Crp_2 PF13545.6 gi|383320818|ref|YP_005381659.1| - 0.05 13.6 0.0 0.15 12.1 0.0 1.9 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|383320818|ref|YP_005381659.1| - 0.096 12.6 0.0 0.26 11.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Put_DNA-bind_N PF06971.13 gi|383320818|ref|YP_005381659.1| - 0.13 12.3 0.0 0.33 11.0 0.0 1.7 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus BioY PF02632.14 gi|383320819|ref|YP_005381660.1| - 4.7e-43 146.5 19.3 8.2e-43 145.7 19.3 1.3 1 0 0 1 1 1 1 BioY family ECF-ribofla_trS PF07155.12 gi|383320819|ref|YP_005381660.1| - 0.00085 19.4 19.9 0.014 15.4 19.9 2.4 1 1 0 1 1 1 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 gi|383320819|ref|YP_005381660.1| - 0.0011 19.1 25.5 0.0018 18.4 25.5 1.5 1 1 0 1 1 1 1 ECF transporter, substrate-specific component CbtB PF09489.10 gi|383320819|ref|YP_005381660.1| - 0.031 14.4 1.2 0.031 14.4 1.2 3.4 3 2 1 4 4 4 0 Probable cobalt transporter subunit (CbtB) Caveolin PF01146.17 gi|383320819|ref|YP_005381660.1| - 3.7 7.5 7.8 0.17 11.9 2.0 1.7 2 0 0 2 2 2 0 Caveolin Yip1 PF04893.17 gi|383320819|ref|YP_005381660.1| - 8.6 6.0 27.5 1.7e+02 1.8 27.5 2.5 1 1 0 1 1 1 0 Yip1 domain TraL PF07178.11 gi|383320819|ref|YP_005381660.1| - 9.6 6.8 8.1 0.68 10.4 0.4 2.6 1 1 1 2 2 2 0 TraL protein ABC_tran PF00005.27 gi|383320820|ref|YP_005381661.1| - 4.5e-27 95.2 0.0 6.2e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|383320820|ref|YP_005381661.1| - 1.8e-08 34.1 0.1 8.4e-07 28.6 0.1 2.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|383320820|ref|YP_005381661.1| - 1.1e-07 32.0 0.0 0.0063 16.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|383320820|ref|YP_005381661.1| - 0.0004 20.1 0.0 0.00075 19.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|383320820|ref|YP_005381661.1| - 0.01 15.6 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|383320820|ref|YP_005381661.1| - 0.045 13.5 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|383320820|ref|YP_005381661.1| - 0.053 13.9 0.1 0.078 13.4 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|383320820|ref|YP_005381661.1| - 0.082 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|383320820|ref|YP_005381661.1| - 0.084 13.1 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|383320820|ref|YP_005381661.1| - 0.095 12.3 0.1 3 7.5 0.0 2.1 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.6 gi|383320820|ref|YP_005381661.1| - 0.12 12.6 0.0 1.1 9.4 0.0 2.4 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|383320821|ref|YP_005381662.1| - 5.9e-23 81.9 0.0 9.1e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|383320821|ref|YP_005381662.1| - 3.6e-13 50.0 0.0 1.9e-05 24.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|383320821|ref|YP_005381662.1| - 3.8e-06 26.5 0.0 0.0014 18.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|383320821|ref|YP_005381662.1| - 3.4e-05 23.5 0.3 9.3e-05 22.1 0.2 1.7 1 1 1 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|383320821|ref|YP_005381662.1| - 4.5e-05 23.9 0.1 7.6e-05 23.2 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|383320821|ref|YP_005381662.1| - 0.00013 22.5 0.1 0.0002 22.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|383320821|ref|YP_005381662.1| - 0.0019 17.6 0.4 0.0042 16.5 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|383320821|ref|YP_005381662.1| - 0.0019 17.3 0.0 0.0028 16.7 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.6 gi|383320821|ref|YP_005381662.1| - 0.0031 17.1 0.2 0.0093 15.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|383320821|ref|YP_005381662.1| - 0.0051 16.6 0.0 0.0081 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|383320821|ref|YP_005381662.1| - 0.0074 16.2 0.3 0.017 15.1 0.1 1.7 1 1 1 2 2 2 1 NACHT domain SRP54 PF00448.22 gi|383320821|ref|YP_005381662.1| - 0.0093 15.6 0.1 0.016 14.9 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|383320821|ref|YP_005381662.1| - 0.011 15.4 0.1 0.025 14.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|383320821|ref|YP_005381662.1| - 0.016 14.8 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|383320821|ref|YP_005381662.1| - 0.019 14.2 0.1 0.034 13.4 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|383320821|ref|YP_005381662.1| - 0.037 14.2 0.1 0.055 13.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|383320821|ref|YP_005381662.1| - 0.041 14.4 0.0 0.088 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|383320821|ref|YP_005381662.1| - 0.046 13.2 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|383320821|ref|YP_005381662.1| - 0.059 13.4 0.2 0.48 10.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|383320821|ref|YP_005381662.1| - 0.059 13.3 0.0 0.082 12.8 0.0 1.3 1 0 0 1 1 1 0 NTPase Rad17 PF03215.15 gi|383320821|ref|YP_005381662.1| - 0.061 13.2 0.0 0.086 12.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 P-loop domain DLIC PF05783.11 gi|383320821|ref|YP_005381662.1| - 0.07 11.9 0.1 0.099 11.5 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_22 PF13401.6 gi|383320821|ref|YP_005381662.1| - 0.074 13.3 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|383320821|ref|YP_005381662.1| - 0.094 13.1 0.1 0.14 12.5 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|383320821|ref|YP_005381662.1| - 0.12 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ATP_bind_1 PF03029.17 gi|383320821|ref|YP_005381662.1| - 0.15 11.8 0.1 0.22 11.2 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 gi|383320821|ref|YP_005381662.1| - 0.16 11.7 0.1 0.32 10.7 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|383320821|ref|YP_005381662.1| - 0.17 11.4 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|383320821|ref|YP_005381662.1| - 0.34 9.5 0.0 0.44 9.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain CbiQ PF02361.16 gi|383320822|ref|YP_005381663.1| - 1.2e-22 80.7 12.4 1.1e-21 77.5 12.4 1.9 1 1 0 1 1 1 1 Cobalt transport protein PhoR PF11808.8 gi|383320822|ref|YP_005381663.1| - 2.9 8.4 8.7 1.7 9.1 5.0 2.3 1 1 0 2 2 2 0 Phosphate regulon sensor protein PhoR E1-E2_ATPase PF00122.20 gi|383320823|ref|YP_005381664.1| - 1.4e-60 203.9 1.3 1.4e-60 203.9 1.3 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|383320823|ref|YP_005381664.1| - 1.6e-48 165.8 2.8 3.7e-48 164.6 2.8 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|383320823|ref|YP_005381664.1| - 2.3e-33 114.4 2.1 9.3e-16 58.0 0.1 2.7 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|383320823|ref|YP_005381664.1| - 1.4e-07 31.5 2.5 0.00052 19.8 0.3 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|383320823|ref|YP_005381664.1| - 1.5e-05 25.5 0.1 0.00032 21.2 0.1 2.8 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|383320823|ref|YP_005381664.1| - 0.0011 19.1 0.1 0.0039 17.3 0.1 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|383320823|ref|YP_005381664.1| - 0.042 13.9 0.0 0.26 11.4 0.0 2.4 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase Fer2_BFD PF04324.15 gi|383320823|ref|YP_005381664.1| - 0.046 14.1 0.5 20 5.6 0.1 3.0 2 0 0 2 2 2 0 BFD-like [2Fe-2S] binding domain PCP_red PF08369.10 gi|383320823|ref|YP_005381664.1| - 0.24 11.6 2.7 0.29 11.4 0.5 2.4 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Glu_synthase PF01645.17 gi|383320824|ref|YP_005381665.1| - 2.2e-07 30.4 0.1 3.9e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase PQ-loop PF04193.14 gi|383320825|ref|YP_005381666.1| - 1.1e-08 34.6 2.7 1.5e-08 34.3 2.4 1.3 1 1 0 1 1 1 1 PQ loop repeat MtN3_slv PF03083.16 gi|383320825|ref|YP_005381666.1| - 1.7e-07 31.1 1.8 2.1e-07 30.9 1.8 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange ER_lumen_recept PF00810.18 gi|383320825|ref|YP_005381666.1| - 0.00087 20.1 0.5 0.0014 19.5 0.5 1.4 1 0 0 1 1 1 1 ER lumen protein retaining receptor LAB_N PF07578.11 gi|383320825|ref|YP_005381666.1| - 0.0019 18.2 0.5 0.0027 17.8 0.5 1.2 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain ArsB PF02040.15 gi|383320826|ref|YP_005381667.1| - 2.4e-43 149.1 31.2 3.2e-43 148.6 31.2 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein CitMHS PF03600.16 gi|383320826|ref|YP_005381667.1| - 2.9e-37 128.5 65.2 1.8e-31 109.5 35.3 1.5 1 1 1 2 2 2 2 Citrate transporter PDT PF00800.18 gi|383320827|ref|YP_005381668.1| - 2.7e-56 190.3 0.0 3.3e-56 190.0 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|383320827|ref|YP_005381668.1| - 5.7e-11 42.0 0.0 1.1e-10 41.1 0.0 1.5 1 0 0 1 1 1 1 ACT domain PadR PF03551.14 gi|383320828|ref|YP_005381669.1| - 5.2e-20 71.2 0.3 1.1e-19 70.2 0.3 1.5 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|383320828|ref|YP_005381669.1| - 1.1e-06 29.3 0.0 1.8e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Replication terminator protein HTH_45 PF14947.6 gi|383320828|ref|YP_005381669.1| - 2.9e-05 24.0 0.0 0.15 12.1 0.0 2.3 1 1 1 2 2 2 2 Winged helix-turn-helix HTH_34 PF13601.6 gi|383320828|ref|YP_005381669.1| - 0.00021 21.4 0.0 0.0007 19.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|383320828|ref|YP_005381669.1| - 0.0013 18.9 0.0 0.0036 17.4 0.0 1.7 1 1 1 2 2 2 1 Replication-relaxation DUF4364 PF14277.6 gi|383320828|ref|YP_005381669.1| - 0.0045 16.8 0.2 0.25 11.1 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|383320828|ref|YP_005381669.1| - 0.0082 16.0 0.0 0.02 14.7 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FUR PF01475.19 gi|383320828|ref|YP_005381669.1| - 0.047 13.8 0.0 0.099 12.8 0.0 1.5 2 0 0 2 2 2 0 Ferric uptake regulator family Spore_YpjB PF09577.10 gi|383320828|ref|YP_005381669.1| - 0.073 12.9 0.3 0.12 12.2 0.3 1.3 1 0 0 1 1 1 0 Sporulation protein YpjB (SpoYpjB) EIF4E-T PF10477.9 gi|383320828|ref|YP_005381669.1| - 0.18 10.6 0.0 0.24 10.2 0.0 1.1 1 0 0 1 1 1 0 Nucleocytoplasmic shuttling protein for mRNA cap-binding EIF4E SPP PF06550.11 gi|383320829|ref|YP_005381670.1| - 8.8e-82 274.7 30.5 1e-81 274.6 30.5 1.0 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease NOG1_N PF17835.1 gi|383320830|ref|YP_005381671.1| - 5.8e-45 153.1 0.1 8.2e-45 152.6 0.1 1.2 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|383320830|ref|YP_005381671.1| - 2.4e-23 81.7 0.0 4.8e-23 80.7 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|383320830|ref|YP_005381671.1| - 1.2e-19 70.5 0.0 2.3e-19 69.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|383320830|ref|YP_005381671.1| - 4.3e-11 42.6 0.0 7.2e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B AIG1 PF04548.16 gi|383320830|ref|YP_005381671.1| - 0.021 14.1 0.0 0.032 13.5 0.0 1.3 1 0 0 1 1 1 0 AIG1 family GTP_EFTU PF00009.27 gi|383320830|ref|YP_005381671.1| - 0.056 13.0 0.0 0.2 11.2 0.0 1.8 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|383320830|ref|YP_005381671.1| - 0.066 12.7 0.2 0.55 9.7 0.0 2.6 2 1 1 3 3 3 0 ADP-ribosylation factor family Ras PF00071.22 gi|383320830|ref|YP_005381671.1| - 0.11 12.1 0.1 0.95 9.0 0.0 2.4 2 1 0 2 2 2 0 Ras family Dynamin_N PF00350.23 gi|383320830|ref|YP_005381671.1| - 0.16 12.0 0.1 7.5 6.6 0.0 2.3 1 1 1 2 2 2 0 Dynamin family GvpK PF05121.12 gi|383320832|ref|YP_005381673.1| - 0.015 15.3 0.4 0.026 14.5 0.4 1.3 1 0 0 1 1 1 0 Gas vesicle protein K Surfac_D-trimer PF09006.11 gi|383320832|ref|YP_005381673.1| - 0.02 14.8 0.1 0.073 13.0 0.1 2.1 2 0 0 2 2 2 0 Lung surfactant protein D coiled-coil trimerisation BrnA_antitoxin PF14384.6 gi|383320832|ref|YP_005381673.1| - 0.028 14.9 0.2 0.15 12.5 0.0 2.1 2 0 0 2 2 2 0 BrnA antitoxin of type II toxin-antitoxin system ThiI PF02568.14 gi|383320832|ref|YP_005381673.1| - 0.054 13.1 0.0 0.083 12.5 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) NPV_P10 PF05531.12 gi|383320832|ref|YP_005381673.1| - 0.082 13.4 0.2 0.16 12.5 0.2 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Peptidase_S24 PF00717.23 gi|383320833|ref|YP_005381674.1| - 0.00033 20.6 0.1 0.00089 19.2 0.1 1.8 1 1 0 1 1 1 1 Peptidase S24-like DUF4404 PF14357.6 gi|383320833|ref|YP_005381674.1| - 0.095 13.3 0.0 0.14 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) Flavin_Reduct PF01613.18 gi|383320834|ref|YP_005381675.1| - 2e-25 89.7 0.0 2.9e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 Flavin reductase like domain PHP PF02811.19 gi|383320835|ref|YP_005381676.1| - 1.2e-09 38.7 0.0 1.3e-09 38.6 0.0 1.3 1 1 0 1 1 1 1 PHP domain OCD_Mu_crystall PF02423.15 gi|383320836|ref|YP_005381677.1| - 1.6e-106 355.9 0.2 1.9e-106 355.6 0.2 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|383320836|ref|YP_005381677.1| - 7.3e-05 22.9 0.0 0.00012 22.2 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|383320836|ref|YP_005381677.1| - 0.023 15.5 0.1 0.04 14.7 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Halo_GVPC PF05465.13 gi|383320836|ref|YP_005381677.1| - 0.082 13.2 1.0 0.26 11.6 1.0 1.8 1 0 0 1 1 1 0 Halobacterial gas vesicle protein C (GVPC) repeat Desulfoferrodox PF01880.18 gi|383320837|ref|YP_005381678.1| - 2.9e-20 72.7 0.1 4.1e-20 72.2 0.1 1.2 1 0 0 1 1 1 1 Desulfoferrodoxin Desulfoferrod_N PF06397.12 gi|383320837|ref|YP_005381678.1| - 1.3e-15 56.7 3.1 2.3e-15 55.9 3.1 1.4 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain Rubrerythrin PF02915.17 gi|383320838|ref|YP_005381679.1| - 3.4e-36 124.7 5.8 4.2e-36 124.4 5.8 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|383320838|ref|YP_005381679.1| - 3.5e-10 40.0 3.1 1e-09 38.5 3.2 1.6 1 1 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.12 gi|383320838|ref|YP_005381679.1| - 0.0023 18.0 4.9 0.2 11.7 0.8 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF892) HypA PF01155.19 gi|383320838|ref|YP_005381679.1| - 0.057 13.5 1.1 0.085 12.9 0.3 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA COQ7 PF03232.13 gi|383320838|ref|YP_005381679.1| - 0.059 13.1 2.6 2.2 8.0 0.7 2.1 1 1 1 2 2 2 0 Ubiquinone biosynthesis protein COQ7 VPR PF00522.18 gi|383320838|ref|YP_005381679.1| - 0.084 12.9 0.4 0.19 11.8 0.4 1.6 1 0 0 1 1 1 0 VPR/VPX protein YecM PF06185.12 gi|383320838|ref|YP_005381679.1| - 0.1 12.3 0.1 0.15 11.7 0.1 1.2 1 0 0 1 1 1 0 YecM protein DUF4379 PF14311.6 gi|383320838|ref|YP_005381679.1| - 6 7.3 10.0 77 3.8 10.0 2.4 1 1 0 1 1 1 0 Probable Zinc-ribbon domain Flavodoxin_1 PF00258.25 gi|383320839|ref|YP_005381680.1| - 6.3e-12 45.9 0.0 1.5e-11 44.7 0.0 1.6 2 0 0 2 2 2 1 Flavodoxin Lactamase_B PF00753.27 gi|383320839|ref|YP_005381680.1| - 5.7e-07 29.7 0.0 8.9e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|383320839|ref|YP_005381680.1| - 0.00028 20.5 0.0 0.00056 19.5 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FMN_red PF03358.15 gi|383320839|ref|YP_005381680.1| - 0.00058 19.6 0.0 0.0014 18.4 0.0 1.6 1 1 0 1 1 1 1 NADPH-dependent FMN reductase PGM_PMM_II PF02879.16 gi|383320839|ref|YP_005381680.1| - 0.0045 17.6 0.0 0.024 15.3 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Flavodoxin_5 PF12724.7 gi|383320839|ref|YP_005381680.1| - 0.0075 16.5 0.0 0.026 14.7 0.0 1.9 1 1 0 1 1 1 1 Flavodoxin domain PGM_PMM_I PF02878.16 gi|383320839|ref|YP_005381680.1| - 0.024 14.3 0.2 0.069 12.9 0.0 1.8 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V4R PF02830.18 gi|383320840|ref|YP_005381681.1| - 2.2e-18 66.0 0.1 3.4e-18 65.4 0.1 1.3 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.20 gi|383320840|ref|YP_005381681.1| - 7.7e-11 41.7 0.1 1.6e-10 40.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|383320840|ref|YP_005381681.1| - 2.7e-07 30.5 0.0 5.5e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|383320840|ref|YP_005381681.1| - 3.3e-05 23.7 0.1 5.7e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|383320840|ref|YP_005381681.1| - 0.00011 22.0 0.1 0.00019 21.2 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|383320840|ref|YP_005381681.1| - 0.00037 20.2 0.0 0.00068 19.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|383320840|ref|YP_005381681.1| - 0.006 16.4 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|383320840|ref|YP_005381681.1| - 0.027 14.7 0.0 0.059 13.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|383320840|ref|YP_005381681.1| - 0.073 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ATC_hydrolase PF14196.6 gi|383320840|ref|YP_005381681.1| - 0.075 13.8 0.1 0.13 13.1 0.1 1.5 1 1 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase HTH_40 PF14493.6 gi|383320840|ref|YP_005381681.1| - 0.089 13.3 0.0 0.16 12.4 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain RP-C PF03428.13 gi|383320840|ref|YP_005381681.1| - 0.11 12.1 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 Replication protein C N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|383320841|ref|YP_005381682.1| - 2.6e-15 56.1 0.5 3.3e-15 55.8 0.5 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|383320841|ref|YP_005381682.1| - 0.0087 16.1 0.9 0.015 15.3 0.9 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF678 PF05077.12 gi|383320841|ref|YP_005381682.1| - 0.075 13.2 0.4 0.075 13.2 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF678) TF_Zn_Ribbon PF08271.12 gi|383320841|ref|YP_005381682.1| - 0.12 11.9 2.7 0.56 9.8 2.0 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding ADK_lid PF05191.14 gi|383320841|ref|YP_005381682.1| - 0.16 11.9 2.3 0.47 10.5 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid TatD_DNase PF01026.21 gi|383320843|ref|YP_005381684.1| - 1.3e-19 70.6 0.0 1.5e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase PTE PF02126.18 gi|383320843|ref|YP_005381684.1| - 0.077 12.4 0.0 0.16 11.3 0.0 1.5 2 0 0 2 2 2 0 Phosphotriesterase family Amidohydro_2 PF04909.14 gi|383320843|ref|YP_005381684.1| - 0.094 12.5 0.3 0.57 9.9 0.2 2.2 1 1 0 1 1 1 0 Amidohydrolase Hemerythrin PF01814.23 gi|383320844|ref|YP_005381685.1| - 1.2e-18 68.0 4.4 1.7e-13 51.3 0.4 1.6 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain Usp PF00582.26 gi|383320845|ref|YP_005381686.1| - 5.5e-30 104.7 0.0 3.4e-11 43.8 0.0 3.3 2 2 1 3 3 3 3 Universal stress protein family SpoU_sub_bind PF08032.12 gi|383320845|ref|YP_005381686.1| - 0.024 14.9 0.0 0.079 13.2 0.0 1.8 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding ETF PF01012.21 gi|383320845|ref|YP_005381686.1| - 0.041 13.8 0.1 5.6 6.8 0.0 2.3 2 0 0 2 2 2 0 Electron transfer flavoprotein domain DUF3164 PF11363.8 gi|383320845|ref|YP_005381686.1| - 0.065 12.8 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3164) KdpC PF02669.15 gi|383320846|ref|YP_005381687.1| - 1.6e-62 210.6 0.0 1.8e-62 210.4 0.0 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain E1-E2_ATPase PF00122.20 gi|383320847|ref|YP_005381688.1| - 8e-35 120.0 2.3 8e-35 120.0 2.3 3.0 2 1 1 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|383320847|ref|YP_005381688.1| - 8.9e-30 104.5 0.6 1.4e-29 103.9 0.6 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|383320847|ref|YP_005381688.1| - 3.6e-06 26.9 3.3 0.00057 19.7 2.5 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|383320847|ref|YP_005381688.1| - 0.00045 20.7 0.0 0.0016 18.9 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cadherin_4 PF17803.1 gi|383320847|ref|YP_005381688.1| - 2.9 8.6 6.7 1 10.0 2.9 2.2 2 0 0 2 2 2 0 Bacterial cadherin-like domain KdpA PF03814.15 gi|383320848|ref|YP_005381689.1| - 1.4e-192 640.8 25.1 1.9e-192 640.3 25.1 1.1 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit Asp4 PF16996.5 gi|383320848|ref|YP_005381689.1| - 0.41 10.5 1.0 6.2 6.7 0.1 2.8 2 0 0 2 2 2 0 Accessory secretory protein Sec Asp4 cobW PF02492.19 gi|383320850|ref|YP_005381691.1| - 2.8e-24 85.7 0.1 3.5e-24 85.4 0.1 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|383320850|ref|YP_005381691.1| - 2.1e-08 33.5 0.6 0.0033 16.5 0.1 2.1 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|383320850|ref|YP_005381691.1| - 5.5e-06 26.3 0.1 1.2e-05 25.2 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.22 gi|383320850|ref|YP_005381691.1| - 0.00049 19.8 0.0 0.0011 18.6 0.0 1.7 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain PduV-EutP PF10662.9 gi|383320850|ref|YP_005381691.1| - 0.00085 19.1 0.5 0.15 11.8 0.1 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|383320850|ref|YP_005381691.1| - 0.0018 18.2 0.2 1.1 9.1 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase AAA_22 PF13401.6 gi|383320850|ref|YP_005381691.1| - 0.0069 16.7 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|383320850|ref|YP_005381691.1| - 0.009 15.9 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 NTPase TrwB_AAD_bind PF10412.9 gi|383320850|ref|YP_005381691.1| - 0.015 14.2 0.1 0.023 13.6 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain LpxK PF02606.14 gi|383320850|ref|YP_005381691.1| - 0.034 13.2 0.0 0.046 12.8 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase NACHT PF05729.12 gi|383320850|ref|YP_005381691.1| - 0.049 13.6 0.1 0.076 12.9 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|383320850|ref|YP_005381691.1| - 0.076 13.4 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain GTP_EFTU PF00009.27 gi|383320850|ref|YP_005381691.1| - 0.11 12.1 0.6 4.2 6.9 0.1 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain HTH_3 PF01381.22 gi|383320851|ref|YP_005381692.1| - 2.1e-10 40.5 0.0 5.4e-10 39.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|383320851|ref|YP_005381692.1| - 4.6e-06 26.6 0.0 1.7e-05 24.7 0.0 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|383320851|ref|YP_005381692.1| - 1.9e-05 24.9 0.0 6.2e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|383320851|ref|YP_005381692.1| - 0.013 15.6 0.0 0.032 14.3 0.0 1.6 2 0 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Mg_chelatase PF01078.21 gi|383320851|ref|YP_005381692.1| - 0.029 13.8 0.1 0.21 11.0 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI HGWP PF03578.15 gi|383320851|ref|YP_005381692.1| - 0.16 11.5 0.1 0.33 10.5 0.1 1.5 1 0 0 1 1 1 0 HGWP repeat ACP_syn_III_C PF08541.10 gi|383320852|ref|YP_005381693.1| - 6.1e-12 45.6 0.0 1.8e-11 44.0 0.0 1.8 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|383320852|ref|YP_005381693.1| - 0.0049 16.3 1.9 0.008 15.6 1.9 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_C PF08540.10 gi|383320852|ref|YP_005381693.1| - 0.013 15.2 0.1 0.34 10.5 0.0 2.1 1 1 1 2 2 2 0 Hydroxymethylglutaryl-coenzyme A synthase C terminal Synuclein PF01387.17 gi|383320852|ref|YP_005381693.1| - 0.13 12.5 1.3 0.25 11.5 1.3 1.6 1 0 0 1 1 1 0 Synuclein ACP_syn_III PF08545.10 gi|383320852|ref|YP_005381693.1| - 0.16 11.9 8.0 0.12 12.2 4.4 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 gi|383320853|ref|YP_005381694.1| - 2e-30 106.0 3.8 4.8e-30 104.8 3.8 1.6 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|383320853|ref|YP_005381694.1| - 1.4e-10 40.9 3.5 1.1e-09 38.0 1.6 2.7 2 1 1 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|383320853|ref|YP_005381694.1| - 3.7e-06 26.7 11.5 7.8e-06 25.7 6.8 3.0 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain SpoVAD PF07451.11 gi|383320853|ref|YP_005381694.1| - 0.00044 19.1 0.1 0.00091 18.0 0.1 1.4 1 0 0 1 1 1 1 Stage V sporulation protein AD (SpoVAD) Ketoacyl-synt_C PF02801.22 gi|383320853|ref|YP_005381694.1| - 0.0015 18.5 1.3 0.081 12.9 0.0 3.1 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|383320853|ref|YP_005381694.1| - 0.048 13.5 1.5 4 7.4 0.5 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OB_aCoA_assoc PF01796.17 gi|383320854|ref|YP_005381695.1| - 2.1e-17 62.9 0.1 2.9e-17 62.4 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|383320854|ref|YP_005381695.1| - 1.1e-11 44.4 4.6 1.7e-11 43.8 4.6 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|383320854|ref|YP_005381695.1| - 0.023 14.7 0.3 0.036 14.1 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_5 PF13719.6 gi|383320854|ref|YP_005381695.1| - 0.099 12.4 0.7 3.1 7.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain tRNA_anti-codon PF01336.25 gi|383320855|ref|YP_005381696.1| - 2.8e-06 27.2 0.0 5.3e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 OB-fold nucleic acid binding domain TOBE_2 PF08402.10 gi|383320855|ref|YP_005381696.1| - 0.11 12.7 0.0 0.28 11.4 0.0 1.6 2 0 0 2 2 2 0 TOBE domain VirB8 PF04335.13 gi|383320855|ref|YP_005381696.1| - 0.13 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 VirB8 protein Flavodoxin_5 PF12724.7 gi|383320856|ref|YP_005381697.1| - 9.3e-09 35.7 0.0 1e-08 35.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|383320856|ref|YP_005381697.1| - 4.5e-08 33.4 0.0 6.7e-08 32.9 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|383320856|ref|YP_005381697.1| - 1.2e-05 25.0 0.0 1.7e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.15 gi|383320856|ref|YP_005381697.1| - 7.3e-05 22.6 0.1 0.0052 16.5 0.0 2.2 1 1 1 2 2 2 2 NADPH-dependent FMN reductase DUF1771 PF08590.10 gi|383320856|ref|YP_005381697.1| - 0.016 15.5 0.2 0.033 14.5 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) Peptidase_S24 PF00717.23 gi|383320857|ref|YP_005381698.1| - 0.00041 20.2 0.0 0.00071 19.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like DUF872 PF05915.12 gi|383320857|ref|YP_005381698.1| - 0.11 12.7 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) Ribosomal_L21e PF01157.18 gi|383320859|ref|YP_005381700.1| - 0.028 14.3 0.1 0.046 13.6 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L21e Ac76 PF05814.11 gi|383320859|ref|YP_005381700.1| - 0.083 12.9 0.6 0.15 12.1 0.6 1.4 1 0 0 1 1 1 0 Orf76 (Ac76) ODV-E18 PF10717.9 gi|383320859|ref|YP_005381700.1| - 0.11 12.4 1.0 0.43 10.5 0.1 2.1 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 BCLP PF12304.8 gi|383320860|ref|YP_005381701.1| - 0.14 11.7 5.1 0.26 10.8 5.1 1.4 1 0 0 1 1 1 0 Beta-casein like protein DUF373 PF04123.13 gi|383320860|ref|YP_005381701.1| - 0.24 10.8 8.4 0.29 10.5 8.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) V4R PF02830.18 gi|383320861|ref|YP_005381702.1| - 3e-14 52.8 1.2 5.1e-14 52.0 1.2 1.4 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.20 gi|383320861|ref|YP_005381702.1| - 3.1e-10 39.7 0.3 6.6e-10 38.7 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|383320861|ref|YP_005381702.1| - 1.5e-05 24.9 0.0 2.9e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|383320861|ref|YP_005381702.1| - 8.4e-05 22.4 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 MarR family Sulfolobus_pRN PF05584.11 gi|383320861|ref|YP_005381702.1| - 0.01 15.8 0.1 0.021 14.9 0.1 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein MarR PF01047.22 gi|383320861|ref|YP_005381702.1| - 0.01 15.7 0.3 0.019 14.9 0.3 1.4 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|383320861|ref|YP_005381702.1| - 0.048 13.5 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|383320861|ref|YP_005381702.1| - 0.061 12.9 0.5 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|383320861|ref|YP_005381702.1| - 0.078 13.5 0.1 0.16 12.5 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Prismane PF03063.20 gi|383320862|ref|YP_005381703.1| - 1.8e-169 564.8 0.0 2e-169 564.6 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Inhibitor_I42 PF09394.10 gi|383320863|ref|YP_005381704.1| - 1.9e-25 89.1 0.1 2.7e-25 88.6 0.1 1.2 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 HMA PF00403.26 gi|383320864|ref|YP_005381705.1| - 1e-17 64.3 0.1 1.2e-17 64.1 0.1 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain Tox-PL-2 PF15643.6 gi|383320864|ref|YP_005381705.1| - 0.0016 18.5 0.0 0.0017 18.4 0.0 1.1 1 0 0 1 1 1 1 Papain fold toxin 2 Spore_YhcN_YlaJ PF09580.10 gi|383320864|ref|YP_005381705.1| - 0.0077 16.3 0.0 0.0092 16.1 0.0 1.1 1 0 0 1 1 1 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Fer4_5 PF12801.7 gi|383320865|ref|YP_005381706.1| - 1.8e-17 63.0 3.7 1.8e-11 43.8 0.0 3.9 4 1 1 5 5 5 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|383320865|ref|YP_005381706.1| - 3.9e-08 33.3 13.2 2.1e-06 27.8 1.1 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|383320865|ref|YP_005381706.1| - 1.7e-05 24.4 20.2 0.0001 22.0 5.1 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|383320865|ref|YP_005381706.1| - 2.3e-05 24.5 12.8 9.5e-05 22.6 8.7 2.8 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383320865|ref|YP_005381706.1| - 0.00048 20.7 18.4 0.21 12.2 2.0 3.5 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383320865|ref|YP_005381706.1| - 0.0026 17.8 16.5 0.16 12.1 3.7 3.5 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383320865|ref|YP_005381706.1| - 0.0033 17.4 3.2 0.0033 17.4 3.2 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383320865|ref|YP_005381706.1| - 0.015 15.3 7.2 0.015 15.3 7.2 3.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|383320865|ref|YP_005381706.1| - 0.08 13.9 0.9 0.08 13.9 0.9 3.5 4 0 0 4 4 4 0 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|383320865|ref|YP_005381706.1| - 0.22 11.7 22.0 0.085 13.0 6.9 3.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383320865|ref|YP_005381706.1| - 0.27 11.8 20.2 0.48 11.0 6.2 3.4 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383320865|ref|YP_005381706.1| - 0.85 10.1 20.9 0.13 12.8 6.3 2.9 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|383320865|ref|YP_005381706.1| - 5.2 8.2 27.9 8.6 7.6 8.6 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain DUF2148 PF09918.9 gi|383320866|ref|YP_005381707.1| - 2.7e-28 97.8 0.3 2.7e-28 97.8 0.3 1.9 2 0 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) DUF1294 PF06961.13 gi|383320866|ref|YP_005381707.1| - 0.16 12.3 0.0 0.43 10.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1294) XPG_I PF00867.18 gi|383320867|ref|YP_005381708.1| - 4.4e-27 94.3 0.0 1.1e-26 93.0 0.0 1.7 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.17 gi|383320867|ref|YP_005381708.1| - 5.5e-20 71.7 0.0 1e-19 70.9 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|383320867|ref|YP_005381708.1| - 1.3e-05 25.7 0.0 3.5e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 gi|383320867|ref|YP_005381708.1| - 0.044 13.9 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif Fe_dep_repr_C PF02742.15 gi|383320867|ref|YP_005381708.1| - 0.11 12.6 1.0 2.5 8.3 0.2 2.7 2 0 0 2 2 2 0 Iron dependent repressor, metal binding and dimerisation domain DUF169 PF02596.15 gi|383320868|ref|YP_005381709.1| - 1.1e-63 214.8 0.1 1.3e-63 214.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 AP_endonuc_2 PF01261.24 gi|383320869|ref|YP_005381710.1| - 1e-10 41.4 0.0 8.4e-09 35.2 0.0 2.1 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel GXGXG PF01493.19 gi|383320870|ref|YP_005381711.1| - 1.3e-09 37.9 22.5 2.7e-05 23.8 17.2 3.6 2 1 0 2 2 2 2 GXGXG motif Amidohydro_3 PF07969.11 gi|383320871|ref|YP_005381712.1| - 5.9e-89 299.7 1.0 6.9e-89 299.5 1.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|383320871|ref|YP_005381712.1| - 6.1e-10 38.9 0.2 8.8e-08 31.8 0.1 2.6 2 0 0 2 2 2 2 Amidohydrolase family Molybdopterin PF00384.22 gi|383320872|ref|YP_005381713.1| - 2.8e-11 43.1 0.0 3.9e-08 32.7 0.0 2.8 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|383320873|ref|YP_005381714.1| - 8e-16 58.0 0.0 9.8e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FlpD PF02662.16 gi|383320874|ref|YP_005381715.1| - 2e-52 176.4 0.0 2.8e-52 175.9 0.0 1.2 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.27 gi|383320875|ref|YP_005381716.1| - 4.1e-16 58.0 39.7 2.7e-06 27.0 2.0 4.7 4 0 0 4 4 4 4 4Fe-4S binding domain Pyr_redox_2 PF07992.14 gi|383320875|ref|YP_005381716.1| - 9.8e-16 57.8 0.0 2.7e-14 53.1 0.0 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|383320875|ref|YP_005381716.1| - 8.5e-13 48.7 31.2 2.1e-07 31.4 10.0 4.3 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383320875|ref|YP_005381716.1| - 1.6e-12 48.1 17.0 0.0031 18.4 1.3 5.0 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|383320875|ref|YP_005381716.1| - 9.8e-11 41.6 37.7 1.2e-06 28.6 9.2 4.5 5 1 1 6 6 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383320875|ref|YP_005381716.1| - 5.7e-10 39.2 31.5 1.7e-05 24.8 10.1 4.4 4 1 1 5 5 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383320875|ref|YP_005381716.1| - 4.4e-09 36.4 34.4 2.9e-06 27.3 7.8 4.1 3 1 1 4 4 3 3 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|383320875|ref|YP_005381716.1| - 7.1e-09 35.5 0.3 7.1e-09 35.5 0.3 2.0 2 0 0 2 2 1 1 FAD dependent oxidoreductase Fer4_6 PF12837.7 gi|383320875|ref|YP_005381716.1| - 1.4e-08 34.4 42.4 0.005 16.9 3.9 5.2 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|383320875|ref|YP_005381716.1| - 5.7e-08 32.4 39.6 0.0058 16.7 1.6 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain FAD_binding_2 PF00890.24 gi|383320875|ref|YP_005381716.1| - 3.7e-06 26.3 0.7 7.4e-06 25.3 0.7 1.5 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|383320875|ref|YP_005381716.1| - 1.2e-05 24.6 0.0 2.1e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Fer4_17 PF13534.6 gi|383320875|ref|YP_005381716.1| - 1.3e-05 25.6 32.8 8.6e-05 23.0 4.8 4.7 4 2 2 6 6 5 4 4Fe-4S dicluster domain NAD_binding_8 PF13450.6 gi|383320875|ref|YP_005381716.1| - 0.00025 21.2 0.0 0.00064 19.9 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_22 PF17179.4 gi|383320875|ref|YP_005381716.1| - 0.00051 20.8 21.5 1 10.3 0.8 4.7 4 0 0 4 4 4 3 4Fe-4S dicluster domain DAO PF01266.24 gi|383320875|ref|YP_005381716.1| - 0.0013 18.4 0.9 0.0065 16.1 0.4 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase Fer4_13 PF13370.6 gi|383320875|ref|YP_005381716.1| - 0.0015 19.0 29.0 0.16 12.6 0.8 5.6 6 0 0 6 6 6 2 4Fe-4S single cluster domain of Ferredoxin I Pyr_redox_3 PF13738.6 gi|383320875|ref|YP_005381716.1| - 0.0018 17.6 0.6 0.011 15.1 0.3 2.3 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|383320875|ref|YP_005381716.1| - 0.0023 17.3 0.0 0.0053 16.1 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|383320875|ref|YP_005381716.1| - 0.0031 16.3 0.8 0.0058 15.4 0.8 1.4 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|383320875|ref|YP_005381716.1| - 0.0074 15.4 0.0 0.42 9.6 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein Fer4_8 PF13183.6 gi|383320875|ref|YP_005381716.1| - 0.0086 16.5 35.1 0.025 15.0 10.8 4.6 3 2 3 6 6 5 3 4Fe-4S dicluster domain Pyr_redox PF00070.27 gi|383320875|ref|YP_005381716.1| - 0.013 16.1 0.3 0.064 13.8 0.3 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|383320875|ref|YP_005381716.1| - 0.017 14.4 0.0 0.044 13.0 0.0 1.6 1 0 0 1 1 1 0 Thi4 family FAD_binding_3 PF01494.19 gi|383320875|ref|YP_005381716.1| - 0.033 13.4 0.4 0.055 12.7 0.4 1.3 1 0 0 1 1 1 0 FAD binding domain Fer4_4 PF12800.7 gi|383320875|ref|YP_005381716.1| - 0.036 14.6 38.7 0.16 12.5 2.3 5.2 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|383320875|ref|YP_005381716.1| - 1.7 9.4 27.4 8.3 7.2 0.5 4.8 3 1 0 3 3 3 0 4Fe-4S single cluster domain CCG PF02754.16 gi|383320876|ref|YP_005381717.1| - 3.8e-32 110.3 2.9 1e-18 67.3 0.2 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Peptidase_C1 PF00112.23 gi|383320876|ref|YP_005381717.1| - 0.14 12.3 0.4 0.22 11.6 0.4 1.2 1 0 0 1 1 1 0 Papain family cysteine protease Fer4_17 PF13534.6 gi|383320877|ref|YP_005381718.1| - 6.5e-10 39.4 7.8 9.9e-10 38.8 7.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|383320877|ref|YP_005381718.1| - 1.5e-09 38.1 7.3 2.4e-09 37.5 7.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383320877|ref|YP_005381718.1| - 1.2e-08 35.0 7.4 2e-08 34.3 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383320877|ref|YP_005381718.1| - 4.4e-06 26.7 8.8 1.1e-05 25.4 8.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|383320877|ref|YP_005381718.1| - 0.00018 22.0 8.3 0.0004 20.9 8.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383320877|ref|YP_005381718.1| - 0.026 15.0 10.5 0.9 10.2 3.4 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|383320877|ref|YP_005381718.1| - 0.052 13.7 5.4 0.13 12.4 5.4 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383320877|ref|YP_005381718.1| - 0.15 13.0 12.7 5.6 8.0 13.1 2.3 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|383320877|ref|YP_005381718.1| - 0.3 11.3 5.6 4.9 7.4 0.4 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|383320877|ref|YP_005381718.1| - 1.6 8.6 6.8 4.2 7.2 0.7 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.27 gi|383320877|ref|YP_005381718.1| - 2.1 8.3 14.3 3.3 7.7 1.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain RecR PF02132.15 gi|383320877|ref|YP_005381718.1| - 2.6 7.7 7.6 3 7.5 1.0 2.4 2 0 0 2 2 2 0 RecR protein Fer4_2 PF12797.7 gi|383320877|ref|YP_005381718.1| - 5 7.4 17.4 1.2 9.4 3.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|383320878|ref|YP_005381719.1| - 1.9e-44 147.8 79.6 6.3e-09 35.3 3.6 8.4 8 1 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383320878|ref|YP_005381719.1| - 1.4e-36 124.8 54.4 4.1e-11 43.3 7.9 5.4 3 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|383320878|ref|YP_005381719.1| - 5.9e-26 90.4 59.1 1.1e-06 28.6 9.8 6.3 5 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|383320878|ref|YP_005381719.1| - 6.6e-26 90.2 68.9 3.7e-06 26.9 10.9 7.4 2 2 6 8 8 8 8 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383320878|ref|YP_005381719.1| - 1.8e-24 85.7 61.4 2.7e-06 27.4 9.4 5.7 2 2 6 8 8 8 8 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383320878|ref|YP_005381719.1| - 2e-24 84.1 67.9 1.6e-05 24.7 3.0 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_16 PF13484.6 gi|383320878|ref|YP_005381719.1| - 5e-23 81.8 65.0 6.3e-06 27.0 7.9 7.2 5 2 3 8 8 8 8 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|383320878|ref|YP_005381719.1| - 4.2e-21 74.1 79.6 2.1e-06 27.6 3.2 8.2 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_8 PF13183.6 gi|383320878|ref|YP_005381719.1| - 2.9e-14 53.2 59.2 0.00068 20.0 7.6 6.4 3 2 4 7 7 7 6 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|383320878|ref|YP_005381719.1| - 4.8e-14 52.6 56.1 0.0011 19.5 7.2 6.6 4 3 2 6 6 6 5 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383320878|ref|YP_005381719.1| - 2.3e-09 37.8 53.5 0.0031 18.2 0.5 8.2 6 1 0 6 6 5 4 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|383320878|ref|YP_005381719.1| - 9.9e-07 29.3 89.4 0.056 14.4 3.5 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_4 PF12800.7 gi|383320878|ref|YP_005381719.1| - 2e-06 27.9 72.5 0.00012 22.3 2.0 8.3 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_22 PF17179.4 gi|383320878|ref|YP_005381719.1| - 0.002 18.9 52.6 0.028 15.2 0.1 8.1 6 2 3 9 9 9 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383320878|ref|YP_005381719.1| - 0.0036 17.8 80.0 0.046 14.3 4.1 8.0 7 1 0 7 7 7 4 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|383320879|ref|YP_005381720.1| - 2.3e-14 52.5 17.7 3e-08 33.1 4.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|383320879|ref|YP_005381720.1| - 2e-13 50.7 20.8 7.5e-11 42.5 10.8 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|383320879|ref|YP_005381720.1| - 4.5e-11 42.1 13.3 5.7e-07 29.2 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|383320879|ref|YP_005381720.1| - 1.6e-10 40.6 16.3 2.1e-05 24.4 4.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|383320879|ref|YP_005381720.1| - 3.2e-10 40.0 7.3 1.9e-05 24.7 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|383320879|ref|YP_005381720.1| - 3.3e-10 40.7 9.7 1.9e-05 25.5 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|383320879|ref|YP_005381720.1| - 4.6e-10 39.5 25.7 6.5e-08 32.6 14.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|383320879|ref|YP_005381720.1| - 6.3e-09 35.9 8.1 1e-08 35.2 8.1 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|383320879|ref|YP_005381720.1| - 6.8e-06 26.2 11.5 0.013 16.0 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|383320879|ref|YP_005381720.1| - 1.4e-05 25.9 7.0 0.027 15.3 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|383320879|ref|YP_005381720.1| - 4.5e-05 24.1 21.6 0.0028 18.5 8.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|383320879|ref|YP_005381720.1| - 8.3e-05 23.1 11.2 0.00058 20.3 11.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|383320879|ref|YP_005381720.1| - 0.00015 22.5 8.2 0.055 14.2 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|383320879|ref|YP_005381720.1| - 0.0014 19.0 13.2 0.0079 16.6 13.3 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|383320879|ref|YP_005381720.1| - 0.043 14.4 12.5 0.25 11.9 2.3 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|383320879|ref|YP_005381720.1| - 0.83 9.9 12.7 2 8.6 1.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Oxidored_q6 PF01058.22 gi|383320880|ref|YP_005381721.1| - 8.2e-27 93.6 0.2 1.4e-26 92.9 0.2 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit KR PF08659.10 gi|383320880|ref|YP_005381721.1| - 0.18 11.7 0.0 0.28 11.1 0.0 1.2 1 0 0 1 1 1 0 KR domain NiFeSe_Hases PF00374.19 gi|383320881|ref|YP_005381722.1| - 2.8e-37 128.8 0.1 1.1e-22 80.6 0.0 3.1 2 1 1 3 3 3 3 Nickel-dependent hydrogenase DUF169 PF02596.15 gi|383320883|ref|YP_005381724.1| - 8.7e-43 146.6 0.0 1e-42 146.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 FMN_red PF03358.15 gi|383320884|ref|YP_005381725.1| - 4.8e-26 91.4 0.0 7.4e-26 90.7 0.0 1.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|383320884|ref|YP_005381725.1| - 4.9e-15 55.8 0.0 6.9e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold TctA PF01970.16 gi|383320885|ref|YP_005381726.1| - 1.2e-64 218.5 45.2 1.5e-64 218.3 45.2 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Shadoo PF14999.6 gi|383320885|ref|YP_005381726.1| - 0.36 10.9 3.9 0.4 10.8 0.7 2.5 2 0 0 2 2 2 0 Shadow of prion protein, neuroprotective HisG PF01634.18 gi|383320887|ref|YP_005381728.1| - 7.2e-52 175.6 0.2 1.1e-51 175.0 0.2 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|383320887|ref|YP_005381728.1| - 5e-27 93.8 0.2 1.3e-26 92.5 0.2 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|383320887|ref|YP_005381728.1| - 0.1 12.5 0.0 0.45 10.4 0.0 2.0 1 1 0 1 1 1 0 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|383320887|ref|YP_005381728.1| - 0.13 11.8 0.0 0.45 10.1 0.0 1.9 1 1 1 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein PcrB PF01884.17 gi|383320888|ref|YP_005381729.1| - 5e-68 228.9 0.0 5.6e-68 228.8 0.0 1.0 1 0 0 1 1 1 1 PcrB family Methyltransf_11 PF08241.12 gi|383320889|ref|YP_005381730.1| - 2.2e-24 85.9 0.0 4.5e-24 84.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|383320889|ref|YP_005381730.1| - 3.9e-24 85.2 0.0 1e-23 83.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|383320889|ref|YP_005381730.1| - 1e-20 74.1 0.0 1.3e-20 73.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|383320889|ref|YP_005381730.1| - 8.1e-17 61.8 0.0 1.2e-16 61.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|383320889|ref|YP_005381730.1| - 9.5e-16 58.1 0.0 1.2e-15 57.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|383320889|ref|YP_005381730.1| - 1.1e-12 47.8 0.0 1.9e-12 47.1 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|383320889|ref|YP_005381730.1| - 4.9e-08 32.7 0.0 6.5e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|383320889|ref|YP_005381730.1| - 6.7e-07 29.1 0.0 9.4e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|383320889|ref|YP_005381730.1| - 0.00023 21.1 0.0 0.00056 19.8 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_32 PF13679.6 gi|383320889|ref|YP_005381730.1| - 0.00044 20.3 0.0 0.00062 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|383320889|ref|YP_005381730.1| - 0.00048 19.5 0.0 0.00079 18.8 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|383320889|ref|YP_005381730.1| - 0.003 17.0 0.0 0.0043 16.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.13 gi|383320889|ref|YP_005381730.1| - 0.013 14.9 0.0 0.015 14.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|383320889|ref|YP_005381730.1| - 0.016 15.1 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|383320889|ref|YP_005381730.1| - 0.033 14.0 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.18 gi|383320889|ref|YP_005381730.1| - 0.042 13.5 0.0 0.12 12.1 0.0 1.6 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 DAO_C PF16901.5 gi|383320889|ref|YP_005381730.1| - 0.12 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase Methyltransf_4 PF02390.17 gi|383320889|ref|YP_005381730.1| - 0.12 11.8 0.0 0.39 10.2 0.0 1.8 3 0 0 3 3 3 0 Putative methyltransferase UbiA PF01040.18 gi|383320890|ref|YP_005381731.1| - 2.2e-42 145.1 18.6 3.1e-42 144.6 18.6 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family YtpI PF14007.6 gi|383320890|ref|YP_005381731.1| - 4.4 7.5 14.2 6.4 7.0 0.5 3.4 3 1 0 3 3 3 0 YtpI-like protein DUF1761 PF08570.10 gi|383320890|ref|YP_005381731.1| - 8.3 6.7 14.9 0.34 11.2 4.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1761) Ribo_biogen_C PF04034.13 gi|383320891|ref|YP_005381732.1| - 1.6e-45 154.0 0.0 1.9e-45 153.7 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|383320891|ref|YP_005381732.1| - 9.1e-09 35.0 0.0 1.6e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI DEAD PF00270.29 gi|383320892|ref|YP_005381733.1| - 2.9e-24 85.8 0.0 1e-23 84.0 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|383320892|ref|YP_005381733.1| - 1.9e-11 44.3 0.1 6.4e-10 39.4 0.1 3.0 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|383320892|ref|YP_005381733.1| - 8.8e-09 35.8 0.7 7.4e-08 32.9 0.7 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|383320892|ref|YP_005381733.1| - 1.3e-06 28.5 0.0 2.7e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.9 gi|383320892|ref|YP_005381733.1| - 0.0011 18.7 0.1 0.0035 17.1 0.1 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda CGI-121 PF08617.10 gi|383320893|ref|YP_005381734.1| - 1.8e-11 44.5 0.0 2e-11 44.3 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 CAP59_mtransfer PF11735.8 gi|383320893|ref|YP_005381734.1| - 0.021 14.5 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 Chitin_synth_1 PF01644.17 gi|383320893|ref|YP_005381734.1| - 0.06 13.3 0.2 0.12 12.3 0.1 1.6 1 1 1 2 2 2 0 Chitin synthase EF1_GNE PF00736.19 gi|383320894|ref|YP_005381735.1| - 1.2e-18 67.0 0.4 1.3e-18 66.9 0.4 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|383320895|ref|YP_005381736.1| - 4.6e-06 26.5 13.0 5.4e-06 26.2 3.6 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF1610) DZR PF12773.7 gi|383320895|ref|YP_005381736.1| - 0.00035 20.5 10.6 0.037 14.0 10.6 2.2 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|383320895|ref|YP_005381736.1| - 0.0033 16.8 13.6 1.3 8.5 0.2 3.6 3 1 0 3 3 3 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|383320895|ref|YP_005381736.1| - 0.0036 17.2 10.3 0.032 14.2 1.1 2.1 1 1 1 2 2 2 2 Putative transposase DNA-binding domain zf-CHY PF05495.12 gi|383320895|ref|YP_005381736.1| - 0.0063 17.0 8.9 0.037 14.5 8.9 1.9 1 1 0 1 1 1 1 CHY zinc finger Rhodanese_C PF12368.8 gi|383320895|ref|YP_005381736.1| - 0.0098 16.2 7.5 0.011 16.1 7.5 1.1 1 0 0 1 1 1 1 Rhodanase C-terminal C1_2 PF03107.16 gi|383320895|ref|YP_005381736.1| - 0.012 15.9 9.5 0.73 10.2 0.4 2.1 1 1 1 2 2 2 0 C1 domain DUF4428 PF14471.6 gi|383320895|ref|YP_005381736.1| - 0.024 14.6 6.3 0.024 14.6 6.3 1.4 2 0 0 2 2 1 0 Domain of unknown function (DUF4428) FYVE_2 PF02318.16 gi|383320895|ref|YP_005381736.1| - 0.037 14.2 5.8 0.045 14.0 5.8 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger Prok-RING_1 PF14446.6 gi|383320895|ref|YP_005381736.1| - 0.056 13.4 10.6 1.3 9.0 4.8 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|383320895|ref|YP_005381736.1| - 0.059 13.1 18.0 0.5 10.1 2.9 3.5 2 2 1 3 3 3 0 zinc-ribbon domain HypA PF01155.19 gi|383320895|ref|YP_005381736.1| - 0.066 13.2 10.5 0.13 12.3 0.6 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-UBP PF02148.19 gi|383320895|ref|YP_005381736.1| - 0.067 13.5 1.4 0.067 13.5 1.4 2.3 2 1 1 3 3 2 0 Zn-finger in ubiquitin-hydrolases and other protein zinc-ribbons_6 PF07191.12 gi|383320895|ref|YP_005381736.1| - 0.07 13.1 7.9 0.31 11.0 7.9 1.9 1 1 0 1 1 1 0 zinc-ribbons C1_1 PF00130.22 gi|383320895|ref|YP_005381736.1| - 0.12 12.3 0.5 0.12 12.3 0.5 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2HC5 PF06221.13 gi|383320895|ref|YP_005381736.1| - 0.13 12.2 11.4 0.095 12.7 1.2 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-C3HC4_3 PF13920.6 gi|383320895|ref|YP_005381736.1| - 0.15 12.0 8.4 0.19 11.6 1.0 2.3 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS91 PF14319.6 gi|383320895|ref|YP_005381736.1| - 0.22 11.6 9.4 0.36 10.9 9.4 1.4 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-tcix PF14952.6 gi|383320895|ref|YP_005381736.1| - 0.22 11.1 20.3 2.5 7.8 8.0 3.1 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-Mss51 PF13824.6 gi|383320895|ref|YP_005381736.1| - 0.31 11.2 10.9 1.4 9.1 2.7 2.6 1 1 2 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2752 PF10825.8 gi|383320895|ref|YP_005381736.1| - 0.31 11.1 6.3 3.1 7.9 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) zf-RING_5 PF14634.6 gi|383320895|ref|YP_005381736.1| - 0.41 10.7 10.3 1.8 8.6 0.9 2.3 2 0 0 2 2 2 0 zinc-RING finger domain zinc_ribbon_10 PF10058.9 gi|383320895|ref|YP_005381736.1| - 0.41 10.4 13.6 2 8.2 9.3 3.3 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|383320895|ref|YP_005381736.1| - 0.53 10.2 16.1 4.3 7.3 5.4 3.0 2 1 0 2 2 2 0 HIT zinc finger zinc_ribbon_4 PF13717.6 gi|383320895|ref|YP_005381736.1| - 1 9.3 15.3 1.4 8.9 0.3 3.8 3 1 1 4 4 4 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|383320895|ref|YP_005381736.1| - 1.3 9.0 14.0 4.3 7.3 2.3 3.6 3 1 0 3 3 3 0 Nudix N-terminal DUF1272 PF06906.11 gi|383320895|ref|YP_005381736.1| - 1.3 9.1 9.9 5.7 7.1 9.9 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) PhnA_Zn_Ribbon PF08274.12 gi|383320895|ref|YP_005381736.1| - 1.4 8.9 13.0 21 5.2 7.6 3.2 2 1 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|383320895|ref|YP_005381736.1| - 1.6 8.9 14.5 4.1 7.6 10.7 2.9 1 1 1 2 2 2 0 Zinc ribbon domain PolC_DP2 PF03833.13 gi|383320895|ref|YP_005381736.1| - 1.6 6.5 6.3 1.8 6.3 6.3 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 UPF0547 PF10571.9 gi|383320895|ref|YP_005381736.1| - 2.3 8.4 14.2 2.2 8.4 0.2 3.4 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 NRDD PF13597.6 gi|383320895|ref|YP_005381736.1| - 3 6.5 10.3 1.2 7.8 0.5 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-HYPF PF07503.12 gi|383320895|ref|YP_005381736.1| - 3.3 7.5 10.3 31 4.5 0.0 2.7 2 1 0 2 2 2 0 HypF finger zf-H2C2_2 PF13465.6 gi|383320895|ref|YP_005381736.1| - 3.4 8.3 12.1 19 5.9 0.1 3.6 3 1 1 4 4 4 0 Zinc-finger double domain NMD3 PF04981.13 gi|383320895|ref|YP_005381736.1| - 4.6 6.6 9.7 5.4 6.4 9.7 1.0 1 0 0 1 1 1 0 NMD3 family zf-ACC PF17848.1 gi|383320895|ref|YP_005381736.1| - 4.8 7.4 19.8 0.92 9.6 2.3 3.8 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain TFIIS_C PF01096.18 gi|383320895|ref|YP_005381736.1| - 7.5 6.5 15.1 12 5.9 0.2 3.9 3 1 1 4 4 4 0 Transcription factor S-II (TFIIS) Rubredoxin_2 PF18073.1 gi|383320895|ref|YP_005381736.1| - 8.8 6.2 18.6 1.3 8.9 0.2 3.8 3 1 1 4 4 4 0 Rubredoxin metal binding domain zf-NADH-PPase PF09297.11 gi|383320895|ref|YP_005381736.1| - 9.7 6.0 14.8 8.3 6.2 0.3 3.9 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Arginosuc_synth PF00764.19 gi|383320896|ref|YP_005381737.1| - 3.2e-175 583.1 0.0 3.6e-175 582.9 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|383320896|ref|YP_005381737.1| - 0.00018 21.0 0.1 0.00053 19.5 0.0 1.8 3 0 0 3 3 3 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|383320896|ref|YP_005381737.1| - 0.003 16.7 0.1 0.0043 16.2 0.1 1.4 1 1 0 1 1 1 1 NAD synthase ExoD PF06055.12 gi|383320897|ref|YP_005381738.1| - 0.0012 18.3 0.9 0.0013 18.2 0.9 1.0 1 0 0 1 1 1 1 Exopolysaccharide synthesis, ExoD DUF3488 PF11992.8 gi|383320897|ref|YP_005381738.1| - 0.14 11.1 1.5 0.15 11.0 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) CPSase_L_D2 PF02786.17 gi|383320898|ref|YP_005381739.1| - 1e-107 358.5 0.7 2.9e-71 239.3 0.1 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|383320898|ref|YP_005381739.1| - 6.7e-42 142.7 0.1 2e-41 141.2 0.1 1.9 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|383320898|ref|YP_005381739.1| - 1.4e-21 76.4 1.0 7.2e-20 71.0 0.0 3.9 5 1 0 5 5 5 1 MGS-like domain ATP-grasp PF02222.22 gi|383320898|ref|YP_005381739.1| - 1.3e-19 70.5 0.4 5.3e-10 39.1 0.1 2.6 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|383320898|ref|YP_005381739.1| - 2.1e-18 66.3 0.0 1.3e-08 34.7 0.0 2.8 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|383320898|ref|YP_005381739.1| - 2.3e-18 66.5 0.1 2.4e-08 33.8 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|383320898|ref|YP_005381739.1| - 6.2e-13 49.1 0.2 2.2e-06 27.8 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.11 gi|383320898|ref|YP_005381739.1| - 0.00027 20.6 0.0 0.22 11.1 0.0 2.6 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.6 gi|383320898|ref|YP_005381739.1| - 0.012 15.1 0.1 2.5 7.5 0.0 3.2 3 0 0 3 3 3 0 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|383320898|ref|YP_005381739.1| - 0.013 15.1 0.0 1.6 8.2 0.0 3.0 2 0 0 2 2 2 0 ATP-grasp domain TIR_2 PF13676.6 gi|383320898|ref|YP_005381739.1| - 0.027 15.1 0.0 0.18 12.4 0.0 2.6 2 0 0 2 2 2 0 TIR domain HTH_28 PF13518.6 gi|383320898|ref|YP_005381739.1| - 0.047 13.8 0.0 1.8 8.8 0.0 3.1 2 0 0 2 2 2 0 Helix-turn-helix domain Mur_ligase PF01225.25 gi|383320898|ref|YP_005381739.1| - 0.079 13.3 0.0 4.8 7.6 0.0 3.4 4 0 0 4 4 3 0 Mur ligase family, catalytic domain TBP PF00352.21 gi|383320898|ref|YP_005381739.1| - 0.087 12.8 0.0 0.24 11.4 0.0 1.7 1 0 0 1 1 1 0 Transcription factor TFIID (or TATA-binding protein, TBP) DUF2007 PF09413.10 gi|383320898|ref|YP_005381739.1| - 0.094 12.9 0.7 1e+02 3.1 0.0 4.0 4 0 0 4 4 4 0 Putative prokaryotic signal transducing protein GATase PF00117.28 gi|383320899|ref|YP_005381740.1| - 1.2e-46 158.9 0.0 1.6e-46 158.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CPSase_sm_chain PF00988.22 gi|383320899|ref|YP_005381740.1| - 1.6e-45 154.0 0.0 2.7e-45 153.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain Peptidase_C26 PF07722.13 gi|383320899|ref|YP_005381740.1| - 6.8e-10 39.1 1.1 0.00061 19.6 0.0 2.7 1 1 2 3 3 3 2 Peptidase C26 FixQ PF05545.11 gi|383320900|ref|YP_005381741.1| - 0.84 9.6 0.1 0.84 9.6 0.1 3.3 3 1 1 4 4 4 0 Cbb3-type cytochrome oxidase component FixQ DUF3810 PF12725.7 gi|383320900|ref|YP_005381741.1| - 3.1 7.0 5.2 0.24 10.7 0.6 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) DUF2070 PF09843.9 gi|383320900|ref|YP_005381741.1| - 3.2 5.9 7.1 4.1 5.6 7.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Rick_17kDa_Anti PF05433.15 gi|383320901|ref|YP_005381742.1| - 0.063 13.2 15.6 0.11 12.3 15.6 1.4 1 0 0 1 1 1 0 Glycine zipper 2TM domain Bacteriocin_IIc PF10439.9 gi|383320901|ref|YP_005381742.1| - 1.6 8.9 12.2 0.8 9.9 10.0 1.6 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide Gly-zipper_YMGG PF13441.6 gi|383320901|ref|YP_005381742.1| - 3.5 7.4 15.4 8 6.3 15.4 1.8 1 1 0 1 1 1 0 YMGG-like Gly-zipper DUF3244 PF11589.8 gi|383320902|ref|YP_005381743.1| - 0.015 15.4 0.7 0.02 15.0 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3244) F_bP_aldolase PF01116.20 gi|383320903|ref|YP_005381744.1| - 3.8e-106 354.6 0.5 3.6e-103 344.9 0.5 2.0 1 1 0 1 1 1 1 Fructose-bisphosphate aldolase class-II PFK PF00365.20 gi|383320904|ref|YP_005381745.1| - 5.6e-101 337.6 0.5 6.6e-101 337.4 0.5 1.0 1 0 0 1 1 1 1 Phosphofructokinase SGL PF08450.12 gi|383320905|ref|YP_005381746.1| - 6.5e-10 39.0 0.1 1.1e-05 25.1 0.1 2.8 1 1 1 2 2 2 2 SMP-30/Gluconolactonase/LRE-like region Reg_prop PF07494.11 gi|383320905|ref|YP_005381746.1| - 4e-07 29.5 11.8 1.2 9.6 0.0 6.7 7 0 0 7 7 7 3 Two component regulator propeller NHL PF01436.21 gi|383320905|ref|YP_005381746.1| - 0.00021 21.1 0.2 6.2 7.1 0.0 4.5 4 0 0 4 4 4 1 NHL repeat MRJP PF03022.16 gi|383320905|ref|YP_005381746.1| - 0.0022 17.4 1.1 0.26 10.6 0.0 3.2 5 0 0 5 5 5 2 Major royal jelly protein DUF4915 PF16261.5 gi|383320905|ref|YP_005381746.1| - 0.14 11.4 0.0 0.4 9.9 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4915) Met_10 PF02475.16 gi|383320906|ref|YP_005381747.1| - 8.2e-58 195.4 0.0 1e-57 195.1 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|383320906|ref|YP_005381747.1| - 0.0044 16.6 0.0 0.0083 15.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|383320906|ref|YP_005381747.1| - 0.044 13.4 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|383320906|ref|YP_005381747.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.11 gi|383320906|ref|YP_005381747.1| - 0.2 10.6 0.0 0.31 10.0 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase NMD3 PF04981.13 gi|383320907|ref|YP_005381748.1| - 4.1e-56 190.2 0.2 5.1e-56 189.8 0.2 1.1 1 0 0 1 1 1 1 NMD3 family ZZ PF00569.17 gi|383320907|ref|YP_005381748.1| - 1.1 9.1 3.4 42 4.1 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, ZZ type zf-NADH-PPase PF09297.11 gi|383320907|ref|YP_005381748.1| - 1.8 8.3 5.1 0.3 10.8 0.6 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zn-ribbon_14 PF16503.5 gi|383320907|ref|YP_005381748.1| - 1.9 8.0 4.1 0.42 10.2 0.4 1.8 2 0 0 2 2 2 0 Zinc-ribbon DZR PF12773.7 gi|383320907|ref|YP_005381748.1| - 7.7 6.6 6.9 36 4.5 4.9 2.5 2 1 0 2 2 2 0 Double zinc ribbon Adenine_glyco PF03352.13 gi|383320908|ref|YP_005381749.1| - 0.0025 17.6 0.1 0.0052 16.6 0.1 1.5 1 1 0 1 1 1 1 Methyladenine glycosylase # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanocella_conradii_HZ254_uid157911/NC_017034.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanocella_conradii_HZ254_uid157911/NC_017034.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanocella_conradii_HZ254_uid157911/NC_017034.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanocella_conradii_HZ254_uid157911/NC_017034.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 15:58:53 2019 # [ok]