# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Exonuc_VII_L PF02601.10 gi|148642061|ref|YP_001272574.1| - 1.2e-123 412.3 17.4 1.1e-108 363.2 5.8 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|148642061|ref|YP_001272574.1| - 9.5e-27 92.7 0.2 3e-26 91.1 0.0 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|148642061|ref|YP_001272574.1| - 0.00071 19.3 0.0 0.0017 18.1 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Fe-ADH PF00465.14 gi|148642061|ref|YP_001272574.1| - 0.015 13.9 0.1 0.025 13.2 0.0 1.3 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase MeMO_Hyd_G PF02964.11 gi|148642061|ref|YP_001272574.1| - 0.016 15.1 1.1 0.055 13.3 0.2 2.3 1 1 1 2 2 2 0 Methane monooxygenase, hydrolase gamma chain DJ-1_PfpI PF01965.19 gi|148642061|ref|YP_001272574.1| - 0.022 14.2 0.0 0.05 13.0 0.0 1.6 1 0 0 1 1 1 0 DJ-1/PfpI family HxlR PF01638.12 gi|148642061|ref|YP_001272574.1| - 0.024 14.2 0.7 0.79 9.3 0.0 3.0 3 0 0 3 3 3 0 HxlR-like helix-turn-helix DUF869 PF05911.6 gi|148642061|ref|YP_001272574.1| - 0.5 8.5 18.9 0.73 7.9 13.1 1.2 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) Phage_integrase PF00589.17 gi|148642062|ref|YP_001272575.1| - 3.9e-20 72.2 0.7 1.4e-19 70.4 0.5 1.9 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|148642062|ref|YP_001272575.1| - 6.5e-05 23.1 4.9 7.9e-05 22.9 1.0 2.6 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|148642062|ref|YP_001272575.1| - 0.024 14.8 0.4 0.36 11.0 0.3 2.4 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain Urm1 PF09138.6 gi|148642062|ref|YP_001272575.1| - 0.24 11.5 2.4 0.63 10.1 0.2 2.6 2 0 0 2 2 2 0 Urm1 (Ubiquitin related modifier) ABC2_membrane_3 PF12698.2 gi|148642063|ref|YP_001272576.1| - 0.016 14.3 0.0 0.016 14.3 0.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1510 PF07423.6 gi|148642063|ref|YP_001272576.1| - 0.029 13.7 0.0 0.039 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) DUF1980 PF09323.5 gi|148642063|ref|YP_001272576.1| - 0.062 13.0 0.1 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) Tmemb_9 PF05434.6 gi|148642063|ref|YP_001272576.1| - 0.12 12.0 0.1 0.15 11.7 0.1 1.1 1 0 0 1 1 1 0 TMEM9 Lysine_decarbox PF03641.9 gi|148642064|ref|YP_001272577.1| - 1.5e-32 112.2 0.0 1.9e-32 111.8 0.0 1.1 1 0 0 1 1 1 1 Possible lysine decarboxylase zf-ribbon_3 PF13248.1 gi|148642066|ref|YP_001272579.1| - 1.3e-09 36.9 1.8 1.8e-09 36.4 1.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148642066|ref|YP_001272579.1| - 6.8e-09 34.9 3.9 9.2e-09 34.5 2.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148642066|ref|YP_001272579.1| - 1.6e-07 31.0 1.1 1.7e-07 30.9 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|148642066|ref|YP_001272579.1| - 1.3e-06 27.9 2.1 1.6e-06 27.6 1.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|148642066|ref|YP_001272579.1| - 0.0015 18.1 1.8 0.12 12.1 0.1 2.1 2 0 0 2 2 2 1 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|148642066|ref|YP_001272579.1| - 0.0018 17.5 3.5 0.023 14.0 2.4 2.1 1 1 0 1 1 1 1 TFIIB zinc-binding RRN7 PF11781.3 gi|148642066|ref|YP_001272579.1| - 0.011 15.1 1.3 0.15 11.6 0.1 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF2116 PF09889.4 gi|148642066|ref|YP_001272579.1| - 0.015 15.1 1.2 0.034 13.9 0.7 1.6 1 1 1 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zinc-ribbons_6 PF07191.7 gi|148642066|ref|YP_001272579.1| - 0.015 15.0 0.9 0.016 14.9 0.6 1.2 1 0 0 1 1 1 0 zinc-ribbons Spt4 PF06093.8 gi|148642066|ref|YP_001272579.1| - 0.023 14.5 2.0 0.026 14.4 1.4 1.1 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Ogr_Delta PF04606.7 gi|148642066|ref|YP_001272579.1| - 0.024 14.3 1.0 1.7 8.3 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger OrfB_Zn_ribbon PF07282.6 gi|148642066|ref|YP_001272579.1| - 0.024 14.2 2.4 0.049 13.2 1.7 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2HC5 PF06221.8 gi|148642066|ref|YP_001272579.1| - 0.032 13.9 1.3 0.04 13.6 0.9 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type YhfH PF14149.1 gi|148642066|ref|YP_001272579.1| - 0.043 13.6 4.8 0.069 12.9 0.5 2.1 1 1 1 2 2 2 0 YhfH-like protein Rubredoxin PF00301.15 gi|148642066|ref|YP_001272579.1| - 0.05 13.4 3.5 2.6 7.9 0.1 2.1 1 1 1 2 2 2 0 Rubredoxin GFA PF04828.9 gi|148642066|ref|YP_001272579.1| - 0.052 13.5 2.4 0.13 12.2 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-DHHC PF01529.15 gi|148642066|ref|YP_001272579.1| - 0.07 12.5 0.4 0.078 12.3 0.3 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase Cript PF10235.4 gi|148642066|ref|YP_001272579.1| - 0.074 13.4 1.6 0.084 13.2 1.1 1.3 1 1 0 1 1 1 0 Microtubule-associated protein CRIPT zf-HYPF PF07503.7 gi|148642066|ref|YP_001272579.1| - 0.075 12.4 1.8 1.1 8.7 0.1 2.1 2 0 0 2 2 2 0 HypF finger zf-HIT PF04438.11 gi|148642066|ref|YP_001272579.1| - 0.085 12.5 0.3 6.7 6.4 0.0 2.1 2 0 0 2 2 2 0 HIT zinc finger DNA_RNApol_7kD PF03604.8 gi|148642066|ref|YP_001272579.1| - 0.091 12.2 3.6 1.1 8.7 2.5 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.6 gi|148642066|ref|YP_001272579.1| - 0.13 11.7 0.9 8.8 5.9 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF164 PF02591.10 gi|148642066|ref|YP_001272579.1| - 0.14 12.0 3.3 2.8 7.8 0.3 2.1 1 1 1 2 2 2 0 Putative zinc ribbon domain Prok-RING_1 PF14446.1 gi|148642066|ref|YP_001272579.1| - 0.17 11.6 4.5 0.33 10.7 2.9 1.6 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF4428 PF14471.1 gi|148642066|ref|YP_001272579.1| - 0.18 11.6 3.0 0.23 11.2 2.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) Zn_ribbon_2 PF12674.2 gi|148642066|ref|YP_001272579.1| - 0.2 12.0 2.5 0.2 12.0 0.3 1.8 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-ISL3 PF14690.1 gi|148642066|ref|YP_001272579.1| - 0.24 11.4 2.2 6.6 6.8 1.5 2.1 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|148642066|ref|YP_001272579.1| - 0.25 11.0 1.4 5.6 6.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|148642066|ref|YP_001272579.1| - 0.4 10.6 4.6 4.2 7.4 0.2 2.2 1 1 2 3 3 3 0 Zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|148642066|ref|YP_001272579.1| - 0.4 10.2 3.0 2 7.9 0.3 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF329 PF03884.9 gi|148642066|ref|YP_001272579.1| - 0.45 10.1 2.9 3.4 7.2 1.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Lar_restr_allev PF14354.1 gi|148642066|ref|YP_001272579.1| - 0.55 10.5 3.4 12 6.2 2.4 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar NOB1_Zn_bind PF08772.6 gi|148642066|ref|YP_001272579.1| - 0.62 9.9 5.4 1.1 9.1 3.7 1.7 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like RecR PF02132.10 gi|148642066|ref|YP_001272579.1| - 0.62 9.5 3.7 18 4.8 0.5 2.1 1 1 1 2 2 2 0 RecR protein A2L_zn_ribbon PF08792.5 gi|148642066|ref|YP_001272579.1| - 0.67 9.4 7.3 12 5.4 5.1 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain Auto_anti-p27 PF06677.7 gi|148642066|ref|YP_001272579.1| - 0.94 9.2 3.8 15 5.4 2.6 2.1 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Sgf11 PF08209.6 gi|148642066|ref|YP_001272579.1| - 1.3 8.4 3.4 2.1 7.7 0.4 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) RNA_POL_M_15KD PF02150.11 gi|148642066|ref|YP_001272579.1| - 1.3 8.7 7.0 2.3 7.9 1.1 2.3 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Prim_Zn_Ribbon PF08273.7 gi|148642066|ref|YP_001272579.1| - 1.7 8.7 5.5 12 6.0 1.0 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-dskA_traR PF01258.12 gi|148642066|ref|YP_001272579.1| - 1.7 8.4 3.9 2.4 7.9 0.3 2.0 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-tcix PF14952.1 gi|148642066|ref|YP_001272579.1| - 2.7 7.3 5.6 8.8 5.7 1.1 2.1 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF3797 PF12677.2 gi|148642066|ref|YP_001272579.1| - 6.5 6.4 6.9 6.6 6.4 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) NAS PF03059.11 gi|148642067|ref|YP_001272580.1| - 9e-08 31.5 0.0 1.3e-07 31.0 0.0 1.2 1 1 0 1 1 1 1 Nicotianamine synthase protein Methyltransf_18 PF12847.2 gi|148642067|ref|YP_001272580.1| - 0.011 16.2 0.0 0.013 16.1 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain DDE_Tnp_IS66 PF03050.9 gi|148642068|ref|YP_001272581.1| - 4.5e-08 32.6 3.0 2.4e-07 30.2 2.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family Zn_Tnp_IS1595 PF12760.2 gi|148642068|ref|YP_001272581.1| - 0.00061 19.5 2.0 0.0015 18.2 1.4 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148642068|ref|YP_001272581.1| - 0.03 13.6 1.7 0.28 10.5 1.1 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|148642068|ref|YP_001272581.1| - 0.063 13.2 3.8 3.5 7.6 1.0 2.8 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|148642068|ref|YP_001272581.1| - 0.098 12.9 0.2 0.31 11.3 0.1 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|148642068|ref|YP_001272581.1| - 0.33 10.6 4.6 6 6.5 3.2 2.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|148642068|ref|YP_001272581.1| - 0.68 10.0 9.3 0.53 10.3 0.4 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TetR_C_8 PF14278.1 gi|148642068|ref|YP_001272581.1| - 1.3 9.4 6.9 0.75 10.2 0.5 3.6 2 1 0 3 3 3 0 Transcriptional regulator C-terminal region Transposase_mut PF00872.13 gi|148642068|ref|YP_001272581.1| - 4.1 5.8 7.2 25 3.2 2.6 2.9 2 1 1 3 3 3 0 Transposase, Mutator family NAS PF03059.11 gi|148642069|ref|YP_001272582.1| - 7.3e-05 22.0 0.0 7.8e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein DUF3785 PF12653.2 gi|148642069|ref|YP_001272582.1| - 0.12 12.1 2.4 0.15 11.8 0.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3785) Acetyltransf_1 PF00583.19 gi|148642070|ref|YP_001272583.1| - 4.9e-12 45.7 0.0 7.2e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|148642070|ref|YP_001272583.1| - 7.8e-10 38.7 0.2 1.4e-09 38.0 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|148642070|ref|YP_001272583.1| - 2e-07 31.1 2.2 3.4e-07 30.3 1.5 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|148642070|ref|YP_001272583.1| - 2.1e-05 24.6 0.0 3.6e-05 23.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|148642070|ref|YP_001272583.1| - 0.011 15.4 0.0 0.022 14.5 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein DUF3804 PF12707.2 gi|148642070|ref|YP_001272583.1| - 0.059 12.9 3.7 0.13 11.8 0.2 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF3804) Acetyltransf_CG PF14542.1 gi|148642070|ref|YP_001272583.1| - 0.086 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PDGLE PF13190.1 gi|148642071|ref|YP_001272584.1| - 0.021 14.5 0.1 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 PDGLE domain Claudin_3 PF06653.6 gi|148642071|ref|YP_001272584.1| - 0.083 12.6 0.5 0.13 11.9 0.4 1.4 1 0 0 1 1 1 0 Tight junction protein, Claudin-like Lipase_GDSL_3 PF14606.1 gi|148642072|ref|YP_001272585.1| - 0.0016 18.2 0.9 0.0026 17.5 0.6 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family MAT_Alpha1 PF04769.7 gi|148642074|ref|YP_001272587.1| - 0.039 13.2 0.1 0.045 13.0 0.1 1.0 1 0 0 1 1 1 0 Mating-type protein MAT alpha 1 Spectrin PF00435.16 gi|148642074|ref|YP_001272587.1| - 0.12 12.7 0.1 2.3 8.5 0.0 2.0 2 0 0 2 2 2 0 Spectrin repeat RE_Eco29kI PF09517.5 gi|148642074|ref|YP_001272587.1| - 0.13 11.5 0.1 0.15 11.3 0.1 1.1 1 0 0 1 1 1 0 Eco29kI restriction endonuclease PRESAN PF09687.5 gi|148642074|ref|YP_001272587.1| - 0.81 9.7 6.9 1.1 9.3 4.8 1.3 1 1 0 1 1 1 0 Plasmodium RESA N-terminal PRD PF00874.15 gi|148642075|ref|YP_001272588.1| - 1.2 9.3 5.9 0.36 10.9 0.2 2.2 2 0 0 2 2 2 0 PRD domain TSP_C PF05735.7 gi|148642077|ref|YP_001272590.1| - 0.17 11.4 0.7 0.19 11.3 0.5 1.1 1 0 0 1 1 1 0 Thrombospondin C-terminal region TPR_11 PF13414.1 gi|148642080|ref|YP_001272593.1| - 1.4e-08 34.2 0.5 0.0016 18.0 0.3 2.1 2 0 0 2 2 2 2 TPR repeat TPR_19 PF14559.1 gi|148642080|ref|YP_001272593.1| - 1.6e-07 31.5 0.2 0.00068 19.9 0.1 2.1 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|148642080|ref|YP_001272593.1| - 1.7e-07 30.6 0.6 0.012 15.4 0.7 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|148642080|ref|YP_001272593.1| - 6e-07 29.9 0.0 0.0017 18.9 0.0 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|148642080|ref|YP_001272593.1| - 3.9e-06 27.0 0.0 0.03 14.9 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|148642080|ref|YP_001272593.1| - 5.6e-06 26.1 0.2 0.026 14.6 0.2 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|148642080|ref|YP_001272593.1| - 5.9e-06 26.0 0.2 0.0039 17.0 0.2 2.2 2 0 0 2 2 2 2 Fis1 C-terminal tetratricopeptide repeat TPR_1 PF00515.23 gi|148642080|ref|YP_001272593.1| - 5.5e-05 22.6 6.4 0.0093 15.5 1.6 2.6 3 0 0 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|148642080|ref|YP_001272593.1| - 0.00045 20.2 1.3 0.00099 19.1 0.7 1.7 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.1 gi|148642080|ref|YP_001272593.1| - 0.00058 19.4 0.9 0.078 12.8 0.3 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|148642080|ref|YP_001272593.1| - 0.0015 18.3 0.0 0.3 10.9 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat Nro1 PF12753.2 gi|148642080|ref|YP_001272593.1| - 0.01 14.8 0.0 0.01 14.8 0.0 1.1 1 0 0 1 1 1 0 Nuclear pore complex subunit Nro1 TPR_12 PF13424.1 gi|148642080|ref|YP_001272593.1| - 0.032 14.1 0.6 0.51 10.3 0.2 2.1 1 1 1 2 2 2 0 Tetratricopeptide repeat NARP1 PF12569.3 gi|148642080|ref|YP_001272593.1| - 0.11 11.2 0.6 0.14 10.9 0.4 1.1 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 adh_short PF00106.20 gi|148642081|ref|YP_001272594.1| - 6.2e-33 114.0 0.0 7.7e-33 113.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|148642081|ref|YP_001272594.1| - 8.7e-32 110.8 0.0 1e-31 110.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|148642081|ref|YP_001272594.1| - 1.4e-14 54.2 0.0 1.9e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|148642081|ref|YP_001272594.1| - 1.8e-05 24.2 0.5 0.00011 21.7 0.4 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Saccharop_dh PF03435.13 gi|148642081|ref|YP_001272594.1| - 0.038 12.9 0.1 0.059 12.3 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase Cas_Cas1 PF01867.11 gi|148642083|ref|YP_001272596.1| - 1.8e-72 243.8 8.7 2.1e-72 243.5 6.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|148642084|ref|YP_001272597.1| - 4.7e-06 26.6 0.2 5.5e-06 26.4 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 DUF4428 PF14471.1 gi|148642084|ref|YP_001272597.1| - 0.14 11.9 1.4 0.2 11.4 0.1 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4428) AMP-binding PF00501.23 gi|148642085|ref|YP_001272598.1| - 8.9e-106 353.7 0.0 1e-105 353.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|148642085|ref|YP_001272598.1| - 1.3e-12 48.5 0.0 2.3e-12 47.6 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Cupin_2 PF07883.6 gi|148642086|ref|YP_001272599.1| - 1.5e-15 56.4 0.4 2.6e-15 55.6 0.3 1.3 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.2 gi|148642086|ref|YP_001272599.1| - 2.1e-07 30.9 0.0 3e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|148642086|ref|YP_001272599.1| - 5.8e-06 26.4 0.0 8.2e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.17 gi|148642086|ref|YP_001272599.1| - 1.8e-05 24.5 0.0 2.6e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|148642086|ref|YP_001272599.1| - 0.00019 21.5 0.0 0.00026 21.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.14 gi|148642086|ref|YP_001272599.1| - 0.0055 16.4 0.1 0.0076 15.9 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Pirin_C PF05726.8 gi|148642086|ref|YP_001272599.1| - 0.018 15.0 0.1 0.035 14.1 0.0 1.4 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Cupin_3 PF05899.7 gi|148642086|ref|YP_001272599.1| - 0.024 14.0 0.0 0.043 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) KduI PF04962.7 gi|148642086|ref|YP_001272599.1| - 0.083 11.9 0.1 0.12 11.3 0.1 1.4 1 1 0 1 1 1 0 KduI/IolB family MannoseP_isomer PF01050.13 gi|148642086|ref|YP_001272599.1| - 0.12 11.9 0.8 0.28 10.7 0.1 1.9 2 1 1 3 3 3 0 Mannose-6-phosphate isomerase Glu_synthase PF01645.12 gi|148642087|ref|YP_001272600.1| - 9e-91 304.5 0.0 1.2e-90 304.0 0.0 1.1 1 0 0 1 1 1 1 Conserved region in glutamate synthase Rubredoxin PF00301.15 gi|148642087|ref|YP_001272600.1| - 4.8e-09 35.9 29.3 0.00026 20.8 1.7 4.7 3 2 0 3 3 3 3 Rubredoxin FMN_dh PF01070.13 gi|148642087|ref|YP_001272600.1| - 1.1e-07 31.0 0.4 1.2e-05 24.3 0.1 2.9 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Zn-ribbon_8 PF09723.5 gi|148642087|ref|YP_001272600.1| - 2.1e-05 24.3 20.6 0.18 11.7 2.7 3.5 3 0 0 3 3 3 3 Zinc ribbon domain IMPDH PF00478.20 gi|148642087|ref|YP_001272600.1| - 0.0046 15.8 0.1 0.013 14.3 0.1 1.8 1 1 1 2 2 2 1 IMP dehydrogenase / GMP reductase domain DNA_ligase_ZBD PF03119.11 gi|148642087|ref|YP_001272600.1| - 0.005 16.5 8.3 0.11 12.1 0.2 3.6 3 0 0 3 3 3 1 NAD-dependent DNA ligase C4 zinc finger domain Fcf1 PF04900.7 gi|148642087|ref|YP_001272600.1| - 0.0099 15.9 0.0 0.039 14.0 0.0 2.0 2 0 0 2 2 1 1 Fcf1 C1_1 PF00130.17 gi|148642087|ref|YP_001272600.1| - 0.023 14.4 15.9 0.12 12.1 0.6 3.6 3 1 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|148642087|ref|YP_001272600.1| - 0.024 14.8 1.7 0.024 14.8 1.2 3.2 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain NMO PF03060.10 gi|148642087|ref|YP_001272600.1| - 0.025 13.7 0.0 0.037 13.1 0.0 1.2 1 0 0 1 1 1 0 Nitronate monooxygenase ThiG PF05690.9 gi|148642087|ref|YP_001272600.1| - 0.029 13.4 0.0 0.048 12.7 0.0 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG zf-C2HC5 PF06221.8 gi|148642087|ref|YP_001272600.1| - 0.036 13.8 11.6 1.2 8.9 0.1 3.6 2 1 1 3 3 3 0 Putative zinc finger motif, C2HC5-type OrfB_Zn_ribbon PF07282.6 gi|148642087|ref|YP_001272600.1| - 0.04 13.5 15.8 0.38 10.4 0.4 4.4 3 1 1 4 4 4 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.14 gi|148642087|ref|YP_001272600.1| - 0.46 10.0 9.1 9.5 5.8 0.1 3.8 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.1 gi|148642087|ref|YP_001272600.1| - 0.61 10.4 14.7 3.2 8.1 0.4 3.8 3 1 1 4 4 3 0 Restriction alleviation protein Lar RecR PF02132.10 gi|148642087|ref|YP_001272600.1| - 1.4 8.4 16.4 5.9 6.4 0.1 5.5 5 1 0 5 5 5 0 RecR protein zf-TFIIB PF13453.1 gi|148642087|ref|YP_001272600.1| - 2 7.6 12.8 0.2 10.9 0.7 3.4 3 0 0 3 3 3 0 Transcription factor zinc-finger FdhE PF04216.7 gi|148642087|ref|YP_001272600.1| - 2.1 7.9 7.1 6.3 6.4 2.1 2.6 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation Cytochrome_C7 PF14522.1 gi|148642087|ref|YP_001272600.1| - 2.6 7.7 9.4 70 3.1 6.6 2.5 1 1 0 1 1 1 0 Cytochrome c7 Cytochrom_c3_2 PF14537.1 gi|148642087|ref|YP_001272600.1| - 2.9 8.3 12.5 1.2 9.4 2.5 2.8 1 1 2 3 3 3 0 Cytochrome c3 zinc-ribbons_6 PF07191.7 gi|148642087|ref|YP_001272600.1| - 3.5 7.4 15.7 0.82 9.5 5.4 3.2 1 1 2 3 3 3 0 zinc-ribbons DZR PF12773.2 gi|148642087|ref|YP_001272600.1| - 5.6 6.8 16.3 11 5.8 2.7 3.9 2 2 0 2 2 2 0 Double zinc ribbon zf-tcix PF14952.1 gi|148642087|ref|YP_001272600.1| - 6 6.2 7.2 6.5 6.1 0.0 3.4 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Methyltransf_31 PF13847.1 gi|148642088|ref|YP_001272601.1| - 1.4e-21 76.6 0.3 1.7e-21 76.3 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|148642088|ref|YP_001272601.1| - 1.8e-21 76.4 0.0 2.5e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|148642088|ref|YP_001272601.1| - 7.5e-15 55.2 0.1 1.5e-14 54.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148642088|ref|YP_001272601.1| - 1.7e-14 54.3 0.0 2.3e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148642088|ref|YP_001272601.1| - 2.9e-11 43.3 0.0 3.7e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|148642088|ref|YP_001272601.1| - 1.3e-09 38.3 0.0 1.9e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|148642088|ref|YP_001272601.1| - 1.8e-08 33.8 0.1 2.2e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.6 gi|148642088|ref|YP_001272601.1| - 8.1e-08 31.8 0.0 1e-07 31.5 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_26 PF13659.1 gi|148642088|ref|YP_001272601.1| - 9.2e-06 25.6 0.0 1.6e-05 24.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|148642088|ref|YP_001272601.1| - 1.6e-05 23.9 0.7 6.4e-05 21.9 0.1 1.7 1 1 1 2 2 2 1 DREV methyltransferase tRNA_U5-meth_tr PF05958.6 gi|148642088|ref|YP_001272601.1| - 0.0003 19.6 0.8 0.00038 19.2 0.5 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase FmrO PF07091.6 gi|148642088|ref|YP_001272601.1| - 0.0006 18.8 0.0 0.00082 18.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) PCMT PF01135.14 gi|148642088|ref|YP_001272601.1| - 0.00064 19.3 0.0 0.0009 18.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|148642088|ref|YP_001272601.1| - 0.00066 18.7 0.0 0.00083 18.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|148642088|ref|YP_001272601.1| - 0.0012 18.2 0.0 0.0015 17.9 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PHP PF02811.14 gi|148642088|ref|YP_001272601.1| - 0.096 12.4 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 PHP domain EF-hand_5 PF13202.1 gi|148642089|ref|YP_001272602.1| - 1.5e-11 43.0 8.2 4.9e-07 28.8 0.3 3.0 3 0 0 3 3 3 2 EF hand EF-hand_7 PF13499.1 gi|148642089|ref|YP_001272602.1| - 3.2e-10 39.9 5.8 1.4e-09 37.9 4.0 2.3 1 1 0 1 1 1 1 EF-hand domain pair EF-hand_1 PF00036.27 gi|148642089|ref|YP_001272602.1| - 3.6e-10 38.3 6.0 3.5e-05 22.7 0.2 2.9 3 0 0 3 3 3 2 EF hand EF-hand_6 PF13405.1 gi|148642089|ref|YP_001272602.1| - 4.4e-08 32.3 2.8 0.0033 17.1 0.1 3.2 3 0 0 3 3 3 2 EF-hand domain EF-hand_8 PF13833.1 gi|148642089|ref|YP_001272602.1| - 2.1e-06 27.2 4.6 0.0051 16.3 0.2 2.9 1 1 1 2 2 2 2 EF-hand domain pair SPARC_Ca_bdg PF10591.4 gi|148642089|ref|YP_001272602.1| - 0.00033 20.6 0.9 0.0035 17.3 0.7 2.2 1 1 0 1 1 1 1 Secreted protein acidic and rich in cysteine Ca binding region DUF204 PF02659.10 gi|148642090|ref|YP_001272603.1| - 5.3e-39 132.1 21.1 7.9e-22 77.1 2.8 2.3 2 0 0 2 2 2 2 Domain of unknown function DUF DUF2141 PF09912.4 gi|148642091|ref|YP_001272604.1| - 4.7e-07 29.4 6.1 0.051 13.2 0.2 3.7 1 1 2 3 3 3 3 Uncharacterized protein conserved in bacteria (DUF2141) DUF1214 PF06742.6 gi|148642091|ref|YP_001272604.1| - 0.00028 21.2 7.9 0.064 13.7 0.8 3.6 1 1 2 3 3 3 2 Protein of unknown function (DUF1214) CarboxypepD_reg PF13620.1 gi|148642091|ref|YP_001272604.1| - 0.00079 19.4 9.6 1.2 9.2 0.7 4.8 1 1 3 4 4 4 2 Carboxypeptidase regulatory-like domain NifU_N PF01592.11 gi|148642091|ref|YP_001272604.1| - 0.0017 18.2 1.5 1.2 9.0 0.1 2.3 2 0 0 2 2 2 2 NifU-like N terminal domain Big_3_3 PF13750.1 gi|148642091|ref|YP_001272604.1| - 0.0019 17.6 2.6 0.72 9.2 0.2 2.8 2 1 0 2 2 2 2 Bacterial Ig-like domain (group 3) Pilin PF00114.14 gi|148642091|ref|YP_001272604.1| - 0.0032 18.1 7.9 2.1 9.0 0.5 3.5 2 1 1 3 3 3 2 Pilin (bacterial filament) PEGA PF08308.6 gi|148642091|ref|YP_001272604.1| - 0.01 15.6 4.1 2 8.2 0.0 4.5 3 1 0 4 4 4 0 PEGA domain DUF1450 PF07293.6 gi|148642091|ref|YP_001272604.1| - 0.01 15.7 0.0 8.1 6.5 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1450) Fer2_4 PF13510.1 gi|148642091|ref|YP_001272604.1| - 0.12 12.1 0.1 16 5.3 0.0 2.8 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Big_3_4 PF13754.1 gi|148642091|ref|YP_001272604.1| - 1.1 9.5 16.8 2.2 8.6 0.1 6.1 2 2 5 7 7 7 0 Bacterial Ig-like domain (group 3) TRAP_beta PF05753.9 gi|148642091|ref|YP_001272604.1| - 1.2 8.2 5.6 0.31 10.1 0.4 2.3 2 0 0 2 2 2 0 Translocon-associated protein beta (TRAPB) DUF4493 PF14900.1 gi|148642091|ref|YP_001272604.1| - 2.4 7.6 28.5 0.057 13.0 1.9 4.8 2 1 3 5 5 5 0 Domain of unknown function (DUF4493) ApbA_C PF08546.6 gi|148642093|ref|YP_001272606.1| - 2.1e-34 118.1 0.0 3.1e-34 117.6 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|148642093|ref|YP_001272606.1| - 1.3e-17 63.6 0.0 1.7e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA MGS PF02142.17 gi|148642093|ref|YP_001272606.1| - 3.6e-05 23.5 0.0 0.00013 21.8 0.0 1.9 2 0 0 2 2 2 1 MGS-like domain MIS13 PF08202.6 gi|148642093|ref|YP_001272606.1| - 0.088 11.8 1.0 3.9 6.4 0.0 2.1 1 1 1 2 2 2 0 Mis12-Mtw1 protein family zinc_ribbon_2 PF13240.1 gi|148642094|ref|YP_001272607.1| - 1.9e-05 23.9 4.6 3e-05 23.3 3.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148642094|ref|YP_001272607.1| - 0.0004 19.5 2.4 0.00057 19.0 1.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148642094|ref|YP_001272607.1| - 0.00054 19.7 0.8 0.00078 19.2 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon NMD3 PF04981.8 gi|148642094|ref|YP_001272607.1| - 0.0079 15.3 0.0 0.008 15.3 0.0 1.2 1 0 0 1 1 1 1 NMD3 family TF_Zn_Ribbon PF08271.7 gi|148642094|ref|YP_001272607.1| - 0.013 14.8 2.6 0.029 13.6 1.8 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding FYDLN_acid PF09538.5 gi|148642094|ref|YP_001272607.1| - 0.091 13.3 2.3 1.3 9.6 1.6 2.2 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) DUF2072 PF09845.4 gi|148642094|ref|YP_001272607.1| - 0.15 11.9 2.1 0.22 11.4 1.5 1.6 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Nudix_N_2 PF14803.1 gi|148642094|ref|YP_001272607.1| - 0.31 10.7 1.9 6.8 6.4 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal Zn_ribbon_recom PF13408.1 gi|148642094|ref|YP_001272607.1| - 1.5 9.1 5.2 14 6.0 0.3 2.3 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain TFIIS_C PF01096.13 gi|148642094|ref|YP_001272607.1| - 1.7 8.3 4.5 11 5.7 0.7 2.9 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) YhfH PF14149.1 gi|148642094|ref|YP_001272607.1| - 5 7.0 6.3 1.2e+02 2.5 5.4 2.1 1 1 1 2 2 2 0 YhfH-like protein Plasmid_killer PF05015.8 gi|148642096|ref|YP_001272609.1| - 0.011 15.8 0.2 0.031 14.4 0.1 1.8 1 0 0 1 1 1 0 Plasmid maintenance system killer protein DnaJ PF00226.26 gi|148642096|ref|YP_001272609.1| - 0.023 14.4 0.0 0.056 13.1 0.0 1.6 1 0 0 1 1 1 0 DnaJ domain LAGLIDADG_1 PF00961.14 gi|148642096|ref|YP_001272609.1| - 0.093 13.2 5.5 0.26 11.8 1.6 2.6 2 1 0 2 2 2 0 LAGLIDADG endonuclease Sin3_corepress PF08295.7 gi|148642096|ref|YP_001272609.1| - 1.3 8.8 6.4 1.7 8.4 0.4 3.0 2 1 1 3 3 3 0 Sin3 family co-repressor DUF2536 PF10750.4 gi|148642096|ref|YP_001272609.1| - 3.6 7.2 5.7 16 5.1 1.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2536) SseB PF07179.7 gi|148642097|ref|YP_001272610.1| - 6.3e-05 22.7 0.0 8.3e-05 22.4 0.0 1.3 1 1 0 1 1 1 1 SseB protein N-terminal domain Uteroglobin PF01099.12 gi|148642097|ref|YP_001272610.1| - 0.004 16.9 0.5 2.3 8.0 0.0 2.5 2 0 0 2 2 2 2 Uteroglobin family Pox_polyA_pol_N PF12630.2 gi|148642097|ref|YP_001272610.1| - 0.013 15.6 0.6 0.041 13.9 0.4 1.8 1 1 0 1 1 1 0 Poxvirus poly(A) polymerase N-terminal domain Phage_connect_1 PF05135.8 gi|148642097|ref|YP_001272610.1| - 0.016 15.3 2.2 0.021 14.9 0.3 1.9 2 0 0 2 2 2 0 Phage gp6-like head-tail connector protein CZB PF13682.1 gi|148642097|ref|YP_001272610.1| - 0.072 13.2 1.8 0.072 13.2 1.3 2.4 2 1 1 3 3 3 0 Chemoreceptor zinc-binding domain SseB PF07179.7 gi|148642099|ref|YP_001272612.1| - 1.2e-06 28.3 0.0 1.7e-06 27.8 0.0 1.3 1 1 0 1 1 1 1 SseB protein N-terminal domain DUF1829 PF08862.5 gi|148642099|ref|YP_001272612.1| - 0.067 13.4 3.5 0.082 13.1 1.4 1.8 1 1 0 2 2 2 0 Domain of unknown function DUF1829 Prefoldin_3 PF13758.1 gi|148642102|ref|YP_001272615.1| - 0.062 13.0 0.4 0.067 12.9 0.3 1.2 1 0 0 1 1 1 0 Prefoldin subunit Blo-t-5 PF11642.3 gi|148642102|ref|YP_001272615.1| - 0.077 12.7 0.0 0.078 12.7 0.0 1.0 1 0 0 1 1 1 0 Mite allergen Blo t 5 PMSR PF01625.16 gi|148642103|ref|YP_001272616.1| - 7.1e-37 126.6 0.7 1.3e-36 125.8 0.5 1.4 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.13 gi|148642103|ref|YP_001272616.1| - 9.6e-24 83.4 0.0 2.1e-23 82.3 0.0 1.6 1 0 0 1 1 1 1 SelR domain Aminotran_1_2 PF00155.16 gi|148642104|ref|YP_001272617.1| - 2.1e-37 128.9 0.0 2.5e-37 128.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|148642104|ref|YP_001272617.1| - 0.0005 19.2 0.0 0.00073 18.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|148642104|ref|YP_001272617.1| - 0.05 11.8 0.0 0.073 11.3 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme MR_MLE_C PF13378.1 gi|148642104|ref|YP_001272617.1| - 0.18 11.8 0.0 1.2 9.1 0.0 2.2 2 0 0 2 2 2 0 Enolase C-terminal domain-like ParA PF10609.4 gi|148642105|ref|YP_001272618.1| - 1.9e-30 104.5 1.3 4.3e-30 103.4 0.7 1.8 2 0 0 2 2 2 1 ParA/MinD ATPase like CbiA PF01656.18 gi|148642105|ref|YP_001272618.1| - 2.2e-20 72.8 0.0 3.2e-20 72.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|148642105|ref|YP_001272618.1| - 1.4e-07 31.5 0.0 2.1e-06 27.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|148642105|ref|YP_001272618.1| - 4.7e-06 25.9 0.0 0.021 14.0 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|148642105|ref|YP_001272618.1| - 0.00027 20.1 0.0 0.00042 19.4 0.0 1.3 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|148642105|ref|YP_001272618.1| - 0.00083 18.4 0.4 0.00083 18.4 0.2 2.2 2 1 0 2 2 2 1 Anion-transporting ATPase APS_kinase PF01583.15 gi|148642105|ref|YP_001272618.1| - 0.0022 17.6 0.0 0.0039 16.8 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase SRP54 PF00448.17 gi|148642105|ref|YP_001272618.1| - 0.0075 15.7 0.1 0.015 14.7 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|148642105|ref|YP_001272618.1| - 0.011 15.3 0.2 0.02 14.4 0.2 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|148642105|ref|YP_001272618.1| - 0.012 14.8 0.2 0.027 13.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|148642105|ref|YP_001272618.1| - 0.026 13.9 0.1 0.054 12.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|148642105|ref|YP_001272618.1| - 0.028 14.5 0.0 0.12 12.4 0.0 2.1 3 0 0 3 3 2 0 AAA domain NB-ARC PF00931.17 gi|148642105|ref|YP_001272618.1| - 0.03 13.1 0.1 0.047 12.5 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.10 gi|148642105|ref|YP_001272618.1| - 0.038 13.7 0.0 0.065 12.9 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_17 PF13207.1 gi|148642105|ref|YP_001272618.1| - 0.042 14.6 0.0 0.091 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|148642105|ref|YP_001272618.1| - 0.055 12.5 0.0 0.1 11.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin RecA PF00154.16 gi|148642105|ref|YP_001272618.1| - 0.061 12.3 0.0 0.1 11.6 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein RNA_helicase PF00910.17 gi|148642105|ref|YP_001272618.1| - 0.097 12.8 0.0 0.33 11.1 0.0 1.9 2 0 0 2 2 2 0 RNA helicase AAA_10 PF12846.2 gi|148642105|ref|YP_001272618.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain KTI12 PF08433.5 gi|148642105|ref|YP_001272618.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PRK PF00485.13 gi|148642105|ref|YP_001272618.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ArgK PF03308.11 gi|148642105|ref|YP_001272618.1| - 0.11 11.2 0.5 0.17 10.6 0.0 1.5 2 0 0 2 2 2 0 ArgK protein AAA_19 PF13245.1 gi|148642105|ref|YP_001272618.1| - 0.15 11.8 0.8 3.3 7.5 0.1 2.4 2 0 0 2 2 2 0 Part of AAA domain Pyr_redox_2 PF07992.9 gi|148642106|ref|YP_001272619.1| - 2.5e-38 131.9 0.0 1.3e-37 129.6 0.0 2.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|148642106|ref|YP_001272619.1| - 1.8e-21 76.3 3.5 6.8e-15 55.2 0.1 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|148642106|ref|YP_001272619.1| - 2.8e-12 46.6 0.0 7.1e-12 45.3 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|148642106|ref|YP_001272619.1| - 5.1e-12 45.3 3.2 0.00048 19.1 0.0 4.1 4 0 0 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|148642106|ref|YP_001272619.1| - 9.9e-12 45.3 2.2 8.2e-06 26.0 0.2 3.7 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|148642106|ref|YP_001272619.1| - 4.1e-08 32.1 0.1 0.047 12.1 0.0 3.4 3 1 0 3 3 3 3 HI0933-like protein NAD_binding_9 PF13454.1 gi|148642106|ref|YP_001272619.1| - 6.5e-08 32.4 0.1 0.036 13.8 0.0 3.5 3 0 0 3 3 3 3 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|148642106|ref|YP_001272619.1| - 4e-07 29.2 0.1 0.00038 19.4 0.0 2.9 2 1 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|148642106|ref|YP_001272619.1| - 2e-06 26.9 1.9 0.16 10.7 0.0 4.0 3 1 1 4 4 4 2 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|148642106|ref|YP_001272619.1| - 4.3e-05 22.3 0.1 0.063 11.9 0.1 2.2 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|148642106|ref|YP_001272619.1| - 0.00013 21.8 0.0 0.017 15.1 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|148642106|ref|YP_001272619.1| - 0.0039 16.1 0.4 0.4 9.5 0.0 3.1 2 1 1 3 3 3 1 Lycopene cyclase protein TrkA_N PF02254.13 gi|148642106|ref|YP_001272619.1| - 0.0049 16.8 1.1 0.5 10.3 0.3 3.2 2 1 0 2 2 2 1 TrkA-N domain FAD_binding_2 PF00890.19 gi|148642106|ref|YP_001272619.1| - 0.022 13.6 2.0 0.08 11.7 0.0 2.8 3 1 1 4 4 4 0 FAD binding domain CPSase_L_chain PF00289.17 gi|148642106|ref|YP_001272619.1| - 0.04 14.0 0.1 1.7 8.7 0.0 3.0 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain FAD_oxidored PF12831.2 gi|148642106|ref|YP_001272619.1| - 0.15 11.0 0.5 10 5.0 0.0 2.5 3 0 0 3 3 3 0 FAD dependent oxidoreductase CAT PF00302.13 gi|148642107|ref|YP_001272620.1| - 1.5e-15 57.3 2.0 1.9e-15 57.0 1.4 1.1 1 0 0 1 1 1 1 Chloramphenicol acetyltransferase 2-oxoacid_dh PF00198.18 gi|148642107|ref|YP_001272620.1| - 0.045 13.0 0.0 5 6.3 0.0 2.1 2 0 0 2 2 2 0 2-oxoacid dehydrogenases acyltransferase (catalytic domain) F420_oxidored PF03807.12 gi|148642109|ref|YP_001272622.1| - 2e-18 66.6 3.5 2.4e-18 66.3 1.2 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|148642109|ref|YP_001272622.1| - 9.5e-07 28.3 0.2 5.4e-05 22.6 0.2 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|148642109|ref|YP_001272622.1| - 3.7e-05 23.5 0.3 6.9e-05 22.6 0.2 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|148642109|ref|YP_001272622.1| - 0.00023 21.2 0.2 0.00092 19.2 0.2 1.9 2 0 0 2 2 2 1 NADH(P)-binding ApbA PF02558.11 gi|148642109|ref|YP_001272622.1| - 0.00092 18.6 0.4 0.0014 18.0 0.3 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|148642109|ref|YP_001272622.1| - 0.0012 18.7 0.3 0.0021 17.9 0.2 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|148642109|ref|YP_001272622.1| - 0.0033 16.6 0.2 0.019 14.1 0.1 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|148642109|ref|YP_001272622.1| - 0.012 15.7 1.3 0.031 14.3 0.3 2.0 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.19 gi|148642109|ref|YP_001272622.1| - 0.018 15.3 2.7 0.037 14.3 0.4 2.1 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|148642109|ref|YP_001272622.1| - 0.05 13.2 0.8 0.08 12.5 0.6 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDH PF02153.12 gi|148642109|ref|YP_001272622.1| - 0.06 12.2 0.3 0.12 11.2 0.2 1.4 1 0 0 1 1 1 0 Prephenate dehydrogenase adh_short PF00106.20 gi|148642109|ref|YP_001272622.1| - 0.078 12.8 0.8 0.14 12.0 0.6 1.4 1 0 0 1 1 1 0 short chain dehydrogenase Exotox-A_target PF09102.5 gi|148642109|ref|YP_001272622.1| - 0.12 11.8 0.1 0.21 11.0 0.1 1.4 1 0 0 1 1 1 0 Exotoxin A, targeting DUF2284 PF10050.4 gi|148642110|ref|YP_001272623.1| - 3.5e-34 117.7 0.0 4.2e-34 117.5 0.0 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) DUF4399 PF14347.1 gi|148642111|ref|YP_001272624.1| - 4.5e-35 119.5 4.2 2.9e-09 36.8 0.2 5.5 3 2 2 5 5 5 4 Domain of unknown function (DUF4399) Beta_helix PF13229.1 gi|148642111|ref|YP_001272624.1| - 5.5e-05 22.9 47.8 5.5e-05 22.9 33.1 7.0 3 2 3 6 6 6 2 Right handed beta helix region DUF4537 PF15057.1 gi|148642111|ref|YP_001272624.1| - 0.0041 16.8 0.0 0.13 12.0 0.0 3.0 2 1 0 2 2 2 1 Domain of unknown function (DUF4537) Big_1 PF02369.11 gi|148642111|ref|YP_001272624.1| - 0.0044 16.9 0.3 0.0044 16.9 0.2 7.9 7 2 2 9 9 9 4 Bacterial Ig-like domain (group 1) COP-gamma_platf PF08752.5 gi|148642111|ref|YP_001272624.1| - 0.0074 16.1 2.2 0.78 9.5 0.3 2.7 2 0 0 2 2 2 2 Coatomer gamma subunit appendage platform subdomain Lsr2 PF11774.3 gi|148642111|ref|YP_001272624.1| - 0.084 12.8 0.1 65 3.5 0.0 3.8 4 0 0 4 4 4 0 Lsr2 DUF4399 PF14347.1 gi|148642112|ref|YP_001272625.1| - 2.6e-25 88.2 0.6 2.7e-05 24.1 0.0 6.2 3 1 2 5 5 5 4 Domain of unknown function (DUF4399) Beta_helix PF13229.1 gi|148642112|ref|YP_001272625.1| - 8.7e-09 35.3 69.4 6.2e-06 26.0 14.4 16.0 5 5 10 15 15 15 6 Right handed beta helix region DUF4139 PF13598.1 gi|148642112|ref|YP_001272625.1| - 0.0036 16.6 0.1 0.0067 15.7 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4139) DUF4174 PF13778.1 gi|148642112|ref|YP_001272625.1| - 0.3 11.1 0.0 36 4.4 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4174) tRNA_NucTransf2 PF09249.6 gi|148642113|ref|YP_001272626.1| - 1.8e-41 140.5 0.0 3.2e-41 139.7 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|148642113|ref|YP_001272626.1| - 2.4e-15 56.6 0.1 8.2e-15 54.9 0.1 1.9 1 0 0 1 1 1 1 Nucleotidyltransferase domain LigT_PEase PF02834.11 gi|148642114|ref|YP_001272627.1| - 7.9e-28 96.2 0.0 2.7e-13 49.6 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|148642114|ref|YP_001272627.1| - 1.1e-13 51.1 0.0 1.3e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|148642114|ref|YP_001272627.1| - 6.4e-11 42.3 0.1 8.6e-11 41.9 0.1 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain DUF777 PF05606.6 gi|148642114|ref|YP_001272627.1| - 0.0097 15.1 0.4 0.0097 15.1 0.3 2.2 2 1 0 2 2 2 1 Borrelia burgdorferi protein of unknown function (DUF777) DHQS PF01959.11 gi|148642115|ref|YP_001272628.1| - 3.6e-142 473.2 4.3 4.1e-142 473.0 3.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Hint PF01079.15 gi|148642115|ref|YP_001272628.1| - 0.024 13.8 0.0 0.07 12.3 0.0 1.8 1 1 0 1 1 1 0 Hint module TOBE_2 PF08402.5 gi|148642115|ref|YP_001272628.1| - 0.033 14.1 0.1 1.3 9.0 0.0 3.0 3 0 0 3 3 3 0 TOBE domain DeoC PF01791.4 gi|148642116|ref|YP_001272629.1| - 1.1e-59 201.5 0.1 1.3e-59 201.3 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|148642116|ref|YP_001272629.1| - 0.0012 18.2 0.7 0.0022 17.4 0.1 1.7 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DHquinase_I PF01487.10 gi|148642116|ref|YP_001272629.1| - 0.02 14.5 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 Type I 3-dehydroquinase UvrD-helicase PF00580.16 gi|148642118|ref|YP_001272631.1| - 4.6e-57 193.6 3.1 4.6e-57 193.6 2.2 4.8 4 1 1 5 5 5 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|148642118|ref|YP_001272631.1| - 7e-43 147.4 10.7 7e-43 147.4 7.4 5.6 3 1 0 3 3 3 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|148642118|ref|YP_001272631.1| - 1.2e-26 93.6 0.8 1.2e-26 93.6 0.6 3.4 3 1 1 4 4 4 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|148642118|ref|YP_001272631.1| - 7.2e-13 48.0 0.0 1.4e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|148642118|ref|YP_001272631.1| - 8.5e-09 35.5 0.5 6.4e-07 29.4 0.0 3.8 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|148642118|ref|YP_001272631.1| - 2.1e-05 24.2 0.0 4.1e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|148642118|ref|YP_001272631.1| - 0.00033 20.2 0.0 5.9 6.3 0.0 4.0 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|148642118|ref|YP_001272631.1| - 0.00042 19.9 0.0 0.00042 19.9 0.0 3.5 2 1 0 2 2 2 1 AAA domain DEAD PF00270.24 gi|148642118|ref|YP_001272631.1| - 0.0066 15.9 1.0 3.2 7.2 0.1 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase DUF4145 PF13643.1 gi|148642118|ref|YP_001272631.1| - 0.017 14.9 0.3 0.017 14.9 0.2 4.9 4 1 0 4 4 4 0 Domain of unknown function (DUF4145) Methyltransf_31 PF13847.1 gi|148642119|ref|YP_001272632.1| - 3.2e-08 33.2 0.1 3.6e-08 33.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148642119|ref|YP_001272632.1| - 4.2e-08 33.7 0.0 7e-08 33.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|148642119|ref|YP_001272632.1| - 0.00012 22.5 0.0 0.00017 21.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|148642119|ref|YP_001272632.1| - 0.00023 21.4 0.0 0.00028 21.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|148642119|ref|YP_001272632.1| - 0.00093 20.0 0.0 0.0017 19.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148642119|ref|YP_001272632.1| - 0.0015 18.3 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_5 PF01795.14 gi|148642119|ref|YP_001272632.1| - 0.0026 17.0 0.1 0.0034 16.6 0.1 1.1 1 0 0 1 1 1 1 MraW methylase family FtsJ PF01728.14 gi|148642119|ref|YP_001272632.1| - 0.031 14.2 0.0 0.05 13.5 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase TrkA_N PF02254.13 gi|148642119|ref|YP_001272632.1| - 0.044 13.7 0.0 0.069 13.1 0.0 1.2 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_2 PF00891.13 gi|148642119|ref|YP_001272632.1| - 0.05 12.7 0.0 0.098 11.8 0.0 1.4 2 0 0 2 2 2 0 O-methyltransferase GHMP_kinases_N PF00288.21 gi|148642120|ref|YP_001272633.1| - 1.7e-09 37.5 0.3 3.7e-09 36.5 0.2 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|148642120|ref|YP_001272633.1| - 0.12 12.5 0.0 0.83 9.8 0.0 2.4 2 1 0 2 2 2 0 GHMP kinases C terminal AAA_14 PF13173.1 gi|148642121|ref|YP_001272634.1| - 1e-36 125.6 1.1 1e-36 125.6 0.7 2.1 2 1 0 2 2 2 1 AAA domain DUF4143 PF13635.1 gi|148642121|ref|YP_001272634.1| - 6.5e-12 45.4 2.1 1e-11 44.8 0.8 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|148642121|ref|YP_001272634.1| - 1.6e-05 24.7 9.6 8e-05 22.4 0.2 3.3 2 1 2 4 4 4 2 Archaeal ATPase FUR PF01475.14 gi|148642121|ref|YP_001272634.1| - 0.00027 20.8 0.2 0.00076 19.3 0.2 1.8 1 0 0 1 1 1 1 Ferric uptake regulator family Trans_reg_C PF00486.23 gi|148642121|ref|YP_001272634.1| - 0.00099 18.9 0.0 0.0033 17.3 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal DAP3 PF10236.4 gi|148642121|ref|YP_001272634.1| - 0.0029 16.5 0.0 0.015 14.2 0.0 2.0 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 HTH_36 PF13730.1 gi|148642121|ref|YP_001272634.1| - 0.0034 17.4 0.8 0.057 13.5 0.1 3.1 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|148642121|ref|YP_001272634.1| - 0.0035 16.9 0.0 0.014 15.0 0.0 2.1 1 1 0 1 1 1 1 HTH domain AAA PF00004.24 gi|148642121|ref|YP_001272634.1| - 0.0046 17.1 0.0 0.011 15.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|148642121|ref|YP_001272634.1| - 0.012 15.6 0.0 0.28 11.1 0.0 2.4 2 1 1 3 3 3 0 AAA ATPase domain Viral_helicase1 PF01443.13 gi|148642121|ref|YP_001272634.1| - 0.022 14.2 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.1 gi|148642121|ref|YP_001272634.1| - 0.023 14.8 0.0 0.2 11.7 0.0 2.4 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|148642121|ref|YP_001272634.1| - 0.025 14.2 0.0 0.081 12.6 0.0 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DNA_pol3_a_NI PF14480.1 gi|148642121|ref|YP_001272634.1| - 0.05 13.2 0.6 0.05 13.2 0.4 2.6 3 0 0 3 3 3 0 DNA polymerase III polC-type N-terminus I AAA_10 PF12846.2 gi|148642121|ref|YP_001272634.1| - 0.086 12.2 0.0 4.8 6.5 0.0 2.4 1 1 1 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|148642121|ref|YP_001272634.1| - 0.38 11.5 2.7 2.4 9.0 0.0 2.8 1 1 0 2 2 2 0 AAA domain Flavodoxin_4 PF12682.2 gi|148642122|ref|YP_001272635.1| - 5.1e-39 133.1 0.0 5.9e-39 132.9 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|148642122|ref|YP_001272635.1| - 1.6e-06 27.7 0.0 2.1e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.2 gi|148642122|ref|YP_001272635.1| - 0.032 13.6 0.1 4.9 6.5 0.0 2.1 1 1 1 2 2 2 0 Flavodoxin domain PHP PF02811.14 gi|148642123|ref|YP_001272636.1| - 3.8e-12 46.3 0.1 7.7e-10 38.8 0.0 2.7 1 1 2 3 3 3 2 PHP domain SIS_2 PF13580.1 gi|148642123|ref|YP_001272636.1| - 0.11 12.1 1.2 6.2 6.5 0.0 3.1 4 0 0 4 4 4 0 SIS domain DUF2115 PF09888.4 gi|148642124|ref|YP_001272637.1| - 5.2e-15 55.9 5.6 8.2e-15 55.2 3.9 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) RibD_C PF01872.12 gi|148642125|ref|YP_001272638.1| - 6.9e-60 202.0 0.0 7.8e-60 201.9 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain PSP1 PF04468.7 gi|148642125|ref|YP_001272638.1| - 0.033 14.1 0.4 0.072 13.0 0.2 1.8 2 1 0 2 2 2 0 PSP1 C-terminal conserved region Glycos_transf_4 PF00953.16 gi|148642126|ref|YP_001272639.1| - 4.4e-29 101.3 19.3 4.4e-29 101.3 13.4 2.2 2 1 0 2 2 2 1 Glycosyl transferase family 4 HTH_7 PF02796.10 gi|148642127|ref|YP_001272640.1| - 0.00068 19.4 0.9 0.0018 18.0 0.6 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase LytR_cpsA_psr PF03816.9 gi|148642127|ref|YP_001272640.1| - 0.0045 16.9 3.3 0.01 15.7 0.3 2.1 2 0 0 2 2 2 1 Cell envelope-related transcriptional attenuator domain DUF1993 PF09351.5 gi|148642127|ref|YP_001272640.1| - 0.038 13.9 0.4 0.068 13.0 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) Holin_LLH PF09682.5 gi|148642127|ref|YP_001272640.1| - 1.7 8.8 8.7 0.93 9.6 0.5 3.0 4 0 0 4 4 4 0 Phage holin protein (Holin_LLH) Imm47 PF15586.1 gi|148642127|ref|YP_001272640.1| - 4.9 7.0 9.7 2.9 7.7 0.1 3.6 4 0 0 4 4 4 0 Immunity protein 47 DZR PF12773.2 gi|148642128|ref|YP_001272641.1| - 0.0001 22.0 0.2 0.0001 22.0 0.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|148642128|ref|YP_001272641.1| - 0.0005 19.1 0.2 0.00071 18.7 0.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain HNH_5 PF14279.1 gi|148642128|ref|YP_001272641.1| - 0.024 14.6 0.9 0.026 14.4 0.6 1.2 1 0 0 1 1 1 0 HNH endonuclease DNA_RNApol_7kD PF03604.8 gi|148642128|ref|YP_001272641.1| - 0.025 14.0 2.0 2.7 7.5 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit FdhE PF04216.7 gi|148642128|ref|YP_001272641.1| - 0.068 12.8 0.2 0.068 12.8 0.1 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zinc_ribbon_2 PF13240.1 gi|148642128|ref|YP_001272641.1| - 0.11 12.0 1.2 0.24 10.9 0.9 1.5 1 1 1 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.9 gi|148642128|ref|YP_001272641.1| - 0.11 12.1 2.8 0.52 10.0 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid ZZ PF00569.12 gi|148642128|ref|YP_001272641.1| - 0.14 11.6 4.5 2.3 7.8 0.1 2.2 1 1 1 2 2 2 0 Zinc finger, ZZ type RecR PF02132.10 gi|148642128|ref|YP_001272641.1| - 0.15 11.5 2.4 0.2 11.1 1.6 1.4 1 0 0 1 1 1 0 RecR protein OrfB_Zn_ribbon PF07282.6 gi|148642128|ref|YP_001272641.1| - 0.15 11.6 2.4 0.26 10.9 1.7 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|148642128|ref|YP_001272641.1| - 0.22 11.2 0.9 16 5.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|148642128|ref|YP_001272641.1| - 0.23 11.7 1.1 2.7 8.3 0.8 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-RanBP PF00641.13 gi|148642128|ref|YP_001272641.1| - 0.24 10.5 1.6 0.33 10.0 1.1 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Nudix_N_2 PF14803.1 gi|148642128|ref|YP_001272641.1| - 0.25 11.0 4.0 1.1 8.9 0.2 2.1 1 1 1 2 2 2 0 Nudix N-terminal zf-Sec23_Sec24 PF04810.10 gi|148642128|ref|YP_001272641.1| - 0.34 10.4 2.0 0.48 10.0 0.2 1.9 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zf-HYPF PF07503.7 gi|148642128|ref|YP_001272641.1| - 0.86 9.0 4.1 4.5 6.7 0.1 2.1 2 0 0 2 2 2 0 HypF finger Prok-RING_1 PF14446.1 gi|148642128|ref|YP_001272641.1| - 1.2 8.9 3.9 2.9 7.6 0.1 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 XPA_N PF01286.13 gi|148642128|ref|YP_001272641.1| - 1.8 8.3 8.8 0.17 11.5 2.1 2.2 1 1 1 2 2 2 0 XPA protein N-terminal TF_Zn_Ribbon PF08271.7 gi|148642128|ref|YP_001272641.1| - 1.9 7.8 5.2 5.4 6.4 3.6 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding RRN7 PF11781.3 gi|148642128|ref|YP_001272641.1| - 5.7 6.5 7.0 7.4 6.1 0.7 2.4 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 HTH_23 PF13384.1 gi|148642129|ref|YP_001272642.1| - 9.9e-10 37.7 0.0 0.0014 18.2 0.0 2.6 3 0 0 3 3 3 2 Homeodomain-like domain GerE PF00196.14 gi|148642129|ref|YP_001272642.1| - 3e-07 29.6 0.0 0.001 18.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|148642129|ref|YP_001272642.1| - 4.5e-07 29.2 0.0 0.018 14.5 0.0 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_7 PF02796.10 gi|148642129|ref|YP_001272642.1| - 7.2e-07 28.9 0.4 0.0088 15.8 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase TrmB PF01978.14 gi|148642129|ref|YP_001272642.1| - 4.8e-06 26.1 0.2 0.083 12.6 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_17 PF12728.2 gi|148642129|ref|YP_001272642.1| - 1.6e-05 25.0 0.0 0.042 14.0 0.0 2.8 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_20 PF12840.2 gi|148642129|ref|YP_001272642.1| - 2.4e-05 24.0 0.0 0.11 12.3 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_28 PF13518.1 gi|148642129|ref|YP_001272642.1| - 3e-05 23.8 0.0 0.032 14.2 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.11 gi|148642129|ref|YP_001272642.1| - 6.4e-05 22.6 0.7 9.7e-05 22.0 0.3 1.4 1 1 0 1 1 1 1 Transposase Terminase_5 PF06056.7 gi|148642129|ref|YP_001272642.1| - 7.7e-05 22.1 0.2 0.034 13.6 0.0 2.6 3 0 0 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.1 gi|148642129|ref|YP_001272642.1| - 0.00022 20.7 0.0 0.63 9.6 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|148642129|ref|YP_001272642.1| - 0.00041 19.6 0.1 0.77 9.1 0.0 2.9 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_26 PF13443.1 gi|148642129|ref|YP_001272642.1| - 0.00072 19.7 0.1 0.25 11.5 0.0 2.6 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_29 PF13551.1 gi|148642129|ref|YP_001272642.1| - 0.00081 19.5 0.0 0.37 10.9 0.0 2.4 1 1 1 2 2 2 1 Winged helix-turn helix HTH_10 PF04967.7 gi|148642129|ref|YP_001272642.1| - 0.0013 18.3 0.0 0.13 11.8 0.0 2.5 2 0 0 2 2 2 1 HTH DNA binding domain HTH_40 PF14493.1 gi|148642129|ref|YP_001272642.1| - 0.002 18.2 0.1 5.5 7.2 0.0 3.1 1 1 2 3 3 3 1 Helix-turn-helix domain DUF1699 PF08004.6 gi|148642129|ref|YP_001272642.1| - 0.0062 16.0 0.5 0.13 11.7 0.0 2.3 1 1 2 3 3 3 1 Protein of unknown function (DUF1699) HTH_19 PF12844.2 gi|148642129|ref|YP_001272642.1| - 0.015 15.3 2.1 4.4 7.4 0.0 2.9 3 1 0 3 3 3 0 Helix-turn-helix domain Sigma70_r3 PF04539.11 gi|148642129|ref|YP_001272642.1| - 0.02 14.8 0.0 0.52 10.2 0.0 2.5 1 1 1 2 2 2 0 Sigma-70 region 3 Phage_terminase PF10668.4 gi|148642129|ref|YP_001272642.1| - 0.024 14.3 2.3 9.2 6.1 0.1 3.1 2 1 1 3 3 3 0 Phage terminase small subunit HTH_3 PF01381.17 gi|148642129|ref|YP_001272642.1| - 0.048 13.5 0.1 1.2 9.0 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix CENP-B_N PF04218.8 gi|148642129|ref|YP_001272642.1| - 0.053 12.9 0.7 0.33 10.4 0.0 2.4 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_IclR PF09339.5 gi|148642129|ref|YP_001272642.1| - 0.071 12.7 0.0 13 5.4 0.0 2.6 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_8 PF02954.14 gi|148642129|ref|YP_001272642.1| - 0.11 12.0 0.0 14 5.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family DUF530 PF04409.7 gi|148642130|ref|YP_001272643.1| - 5.5e-116 387.6 31.8 6.4e-116 387.4 22.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF530) EF1G PF00647.14 gi|148642130|ref|YP_001272643.1| - 0.033 13.9 2.8 0.25 11.0 0.2 2.7 2 0 0 2 2 2 0 Elongation factor 1 gamma, conserved domain tRNA-synt_1g PF09334.6 gi|148642131|ref|YP_001272644.1| - 3.8e-154 513.0 0.1 5.5e-154 512.5 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|148642131|ref|YP_001272644.1| - 5.8e-26 90.1 0.2 1.1e-25 89.3 0.1 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|148642131|ref|YP_001272644.1| - 1.4e-20 72.8 0.2 3.6e-08 31.8 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|148642131|ref|YP_001272644.1| - 1.3e-10 40.9 4.5 0.00014 21.0 0.1 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|148642131|ref|YP_001272644.1| - 0.00075 18.2 1.0 0.0031 16.2 0.1 2.4 3 0 0 3 3 3 1 tRNA synthetases class I (K) DZR PF12773.2 gi|148642131|ref|YP_001272644.1| - 0.0052 16.5 8.8 0.094 12.5 6.4 2.2 1 1 1 2 2 2 2 Double zinc ribbon IgaA PF07095.6 gi|148642131|ref|YP_001272644.1| - 0.025 12.3 0.6 0.037 11.7 0.4 1.1 1 0 0 1 1 1 0 Intracellular growth attenuator protein IgaA Laminin_EGF PF00053.19 gi|148642131|ref|YP_001272644.1| - 0.23 11.4 6.4 0.47 10.4 4.4 1.5 1 0 0 1 1 1 0 Laminin EGF-like (Domains III and V) HypA PF01155.14 gi|148642131|ref|YP_001272644.1| - 0.74 9.5 8.2 4.6 6.9 0.2 2.6 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family Cript PF10235.4 gi|148642131|ref|YP_001272644.1| - 1.3 9.4 5.6 5.5 7.4 1.3 2.8 2 1 0 2 2 2 0 Microtubule-associated protein CRIPT zf-C3HC4_3 PF13920.1 gi|148642131|ref|YP_001272644.1| - 1.6 8.4 6.5 5.4 6.7 0.3 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.1 gi|148642131|ref|YP_001272644.1| - 7 6.2 11.1 12 5.4 1.9 2.9 2 1 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148642131|ref|YP_001272644.1| - 9.3 5.6 11.0 2.8 7.2 0.6 2.9 1 1 2 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148642131|ref|YP_001272644.1| - 9.5 5.6 12.5 2.7 7.3 2.3 3.4 3 0 0 3 3 3 0 TFIIB zinc-binding DNA_primase_lrg PF04104.9 gi|148642133|ref|YP_001272646.1| - 4.5e-19 68.7 0.0 2.8e-18 66.1 0.0 2.2 2 1 0 2 2 2 1 Eukaryotic and archaeal DNA primase, large subunit DNA_primase_S PF01896.14 gi|148642135|ref|YP_001272648.1| - 5.2e-11 42.5 0.3 9.4e-11 41.7 0.2 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit DUF1068 PF06364.7 gi|148642135|ref|YP_001272648.1| - 0.082 12.5 0.0 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1068) Thymidylate_kin PF02223.12 gi|148642137|ref|YP_001272650.1| - 1.1e-31 109.6 0.2 1.2e-31 109.5 0.2 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|148642137|ref|YP_001272650.1| - 5.8e-05 23.4 0.4 0.00031 21.0 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|148642137|ref|YP_001272650.1| - 0.00099 19.9 0.4 0.0026 18.5 0.2 1.8 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|148642137|ref|YP_001272650.1| - 0.0015 18.0 0.0 0.0046 16.4 0.0 1.8 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain AAA_33 PF13671.1 gi|148642137|ref|YP_001272650.1| - 0.004 17.0 0.0 1 9.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|148642137|ref|YP_001272650.1| - 0.0058 16.2 0.0 0.0088 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain dNK PF01712.14 gi|148642137|ref|YP_001272650.1| - 0.0088 15.9 1.6 0.015 15.2 1.1 1.5 1 1 0 1 1 1 1 Deoxynucleoside kinase PPK2 PF03976.9 gi|148642137|ref|YP_001272650.1| - 0.019 14.2 0.1 2.9 7.1 0.0 2.3 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) KTI12 PF08433.5 gi|148642137|ref|YP_001272650.1| - 0.049 12.8 0.3 0.09 11.9 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 ABC_tran PF00005.22 gi|148642137|ref|YP_001272650.1| - 0.073 13.3 0.2 0.087 13.1 0.2 1.5 1 1 0 1 1 1 0 ABC transporter CTP_transf_1 PF01148.15 gi|148642138|ref|YP_001272651.1| - 5.7e-09 36.0 20.3 1.1e-08 35.0 14.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase family Radical_SAM PF04055.16 gi|148642139|ref|YP_001272652.1| - 2.1e-20 73.5 0.1 3.4e-20 72.8 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily TPP_enzyme_N PF02776.13 gi|148642140|ref|YP_001272653.1| - 1.7e-12 47.1 0.0 2.2e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF128 PF01995.11 gi|148642140|ref|YP_001272653.1| - 0.033 13.1 0.1 0.059 12.2 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function DUF128 TPP_enzyme_C PF02775.16 gi|148642141|ref|YP_001272654.1| - 1.5e-18 66.7 0.2 3.6e-18 65.5 0.1 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FlpD PF02662.11 gi|148642142|ref|YP_001272655.1| - 4.3e-28 97.4 0.0 3.2e-27 94.6 0.0 2.4 2 0 0 2 2 2 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|148642142|ref|YP_001272655.1| - 3.7e-17 61.1 40.2 6.7e-06 25.4 3.7 5.3 5 0 0 5 5 5 4 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|148642142|ref|YP_001272655.1| - 2.4e-11 43.8 0.0 2.3e-09 37.4 0.0 3.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|148642142|ref|YP_001272655.1| - 9.1e-11 41.2 0.8 2.1e-07 30.1 0.6 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Fer4_7 PF12838.2 gi|148642142|ref|YP_001272655.1| - 1.1e-10 41.7 36.6 2.3e-07 31.0 4.3 4.4 2 1 3 5 5 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642142|ref|YP_001272655.1| - 1.1e-09 37.5 40.6 0.0008 19.1 1.7 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain NAD_binding_8 PF13450.1 gi|148642142|ref|YP_001272655.1| - 2.5e-09 37.0 0.1 5.3e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|148642142|ref|YP_001272655.1| - 2.9e-09 37.2 0.7 1.4e-06 28.5 0.1 2.9 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_10 PF13237.1 gi|148642142|ref|YP_001272655.1| - 3.1e-09 36.5 40.9 9.9e-06 25.2 7.8 4.0 4 1 0 4 4 4 2 4Fe-4S dicluster domain Thi4 PF01946.12 gi|148642142|ref|YP_001272655.1| - 5.8e-09 35.3 0.5 2.8e-08 33.1 0.1 2.1 2 0 0 2 2 2 1 Thi4 family Fer4_9 PF13187.1 gi|148642142|ref|YP_001272655.1| - 1.7e-08 34.6 39.2 7.8e-05 22.8 5.9 4.5 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642142|ref|YP_001272655.1| - 7.3e-08 32.1 32.3 0.0083 15.9 0.4 4.9 4 1 1 5 5 4 4 4Fe-4S dicluster domain FAD_binding_2 PF00890.19 gi|148642142|ref|YP_001272655.1| - 1.2e-07 31.0 2.6 1.8e-07 30.3 1.8 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|148642142|ref|YP_001272655.1| - 1.2e-07 31.1 0.2 3.1e-07 29.8 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer4_6 PF12837.2 gi|148642142|ref|YP_001272655.1| - 2.9e-07 30.0 51.4 0.0014 18.3 2.6 5.2 6 0 0 6 6 4 4 4Fe-4S binding domain Pyr_redox PF00070.22 gi|148642142|ref|YP_001272655.1| - 4e-07 30.3 3.4 5.9e-06 26.6 0.3 3.2 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_15 PF13459.1 gi|148642142|ref|YP_001272655.1| - 7.5e-07 29.6 25.9 0.041 14.4 1.7 4.7 4 0 0 4 4 4 3 4Fe-4S single cluster domain HI0933_like PF03486.9 gi|148642142|ref|YP_001272655.1| - 1.3e-05 23.8 2.3 2.2e-05 23.1 1.6 1.3 1 0 0 1 1 1 1 HI0933-like protein Fer4_16 PF13484.1 gi|148642142|ref|YP_001272655.1| - 1.5e-05 25.6 31.1 0.047 14.4 0.2 5.6 6 0 0 6 6 5 4 4Fe-4S double cluster binding domain GIDA PF01134.17 gi|148642142|ref|YP_001272655.1| - 2.9e-05 23.1 2.1 3.2e-05 22.9 0.5 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Fer4_8 PF13183.1 gi|148642142|ref|YP_001272655.1| - 8.7e-05 22.4 37.0 0.0027 17.6 8.3 4.7 3 2 3 6 6 6 4 4Fe-4S dicluster domain FAD_binding_3 PF01494.14 gi|148642142|ref|YP_001272655.1| - 0.00036 19.6 0.5 0.00065 18.8 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|148642142|ref|YP_001272655.1| - 0.00077 19.7 40.3 0.0028 17.9 7.6 4.8 3 2 2 5 5 5 4 4Fe-4S dicluster domain NAD_binding_7 PF13241.1 gi|148642142|ref|YP_001272655.1| - 0.0012 19.0 0.6 0.13 12.4 0.0 3.0 2 0 0 2 2 2 1 Putative NAD(P)-binding Osmo_CC PF08946.5 gi|148642142|ref|YP_001272655.1| - 0.0025 17.8 0.5 0.35 10.9 0.3 2.9 2 0 0 2 2 2 1 Osmosensory transporter coiled coil AlaDh_PNT_C PF01262.16 gi|148642142|ref|YP_001272655.1| - 0.0027 17.3 0.1 0.0079 15.7 0.1 1.8 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|148642142|ref|YP_001272655.1| - 0.0027 16.4 2.5 0.03 12.9 1.1 2.1 2 0 0 2 2 2 1 Tryptophan halogenase Fer4_18 PF13746.1 gi|148642142|ref|YP_001272655.1| - 0.0029 17.9 29.8 0.035 14.5 0.9 4.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain Lycopene_cycl PF05834.7 gi|148642142|ref|YP_001272655.1| - 0.0036 16.2 1.3 0.0087 15.0 0.3 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|148642142|ref|YP_001272655.1| - 0.0079 15.8 0.1 0.017 14.7 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2325 PF10087.4 gi|148642142|ref|YP_001272655.1| - 0.016 14.9 0.1 0.084 12.7 0.0 2.3 2 0 0 2 2 1 0 Uncharacterized protein conserved in bacteria (DUF2325) Amino_oxidase PF01593.19 gi|148642142|ref|YP_001272655.1| - 0.018 14.1 0.0 0.031 13.3 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|148642142|ref|YP_001272655.1| - 0.037 13.8 0.6 0.36 10.6 0.4 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Fer4_4 PF12800.2 gi|148642142|ref|YP_001272655.1| - 7.7 7.1 47.6 0.033 14.5 2.1 5.1 5 0 0 5 5 4 0 4Fe-4S binding domain CCG PF02754.11 gi|148642143|ref|YP_001272656.1| - 7.2e-19 67.5 3.1 4.9e-09 36.0 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain zf-C2H2_6 PF13912.1 gi|148642143|ref|YP_001272656.1| - 0.0042 16.9 0.1 0.0042 16.9 0.1 3.8 5 0 0 5 5 5 1 C2H2-type zinc finger Fer4_8 PF13183.1 gi|148642144|ref|YP_001272657.1| - 6.6e-11 42.0 7.6 1.2e-10 41.2 5.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642144|ref|YP_001272657.1| - 5.1e-09 36.3 8.4 1e-08 35.4 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148642144|ref|YP_001272657.1| - 1e-06 29.0 8.2 2e-06 28.0 5.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642144|ref|YP_001272657.1| - 1.3e-06 28.5 8.9 3.2e-06 27.2 6.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642144|ref|YP_001272657.1| - 2e-06 27.4 9.2 4.4e-06 26.4 6.4 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642144|ref|YP_001272657.1| - 4e-05 23.3 7.6 8.8e-05 22.2 5.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148642144|ref|YP_001272657.1| - 6.6e-05 23.2 9.6 0.017 15.5 1.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642144|ref|YP_001272657.1| - 0.00057 19.6 11.0 0.011 15.6 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148642144|ref|YP_001272657.1| - 0.002 18.2 15.6 0.01 16.1 1.5 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|148642144|ref|YP_001272657.1| - 0.0065 16.0 17.1 0.025 14.1 2.8 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148642144|ref|YP_001272657.1| - 0.0075 16.9 10.5 0.033 14.9 7.3 2.1 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|148642144|ref|YP_001272657.1| - 0.033 14.0 4.2 0.033 14.0 2.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|148642144|ref|YP_001272657.1| - 1.1 8.8 9.7 2.7 7.6 1.1 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.1 gi|148642144|ref|YP_001272657.1| - 2.1 8.7 12.0 0.45 10.9 1.5 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF39 PF01837.11 gi|148642145|ref|YP_001272658.1| - 3.8e-112 374.3 0.0 4.3e-112 374.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4 PF00037.22 gi|148642145|ref|YP_001272658.1| - 0.00011 21.6 7.6 0.00048 19.6 0.2 2.8 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642145|ref|YP_001272658.1| - 0.0004 20.6 7.1 0.0069 16.7 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642145|ref|YP_001272658.1| - 0.0014 18.4 11.0 0.011 15.6 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|148642145|ref|YP_001272658.1| - 0.0028 17.4 4.5 0.085 12.7 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148642145|ref|YP_001272658.1| - 0.0067 16.4 4.0 0.038 14.0 0.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642145|ref|YP_001272658.1| - 0.016 15.0 11.0 0.047 13.4 7.7 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|148642145|ref|YP_001272658.1| - 0.077 13.5 0.2 0.077 13.5 0.1 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|148642145|ref|YP_001272658.1| - 0.16 12.2 12.9 0.36 11.1 2.2 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148642145|ref|YP_001272658.1| - 0.49 10.3 9.9 2.3 8.2 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148642145|ref|YP_001272658.1| - 0.6 10.5 13.7 0.1 12.9 1.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148642145|ref|YP_001272658.1| - 4.6 8.0 14.0 11 6.8 2.3 2.9 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|148642145|ref|YP_001272658.1| - 8.4 7.2 14.0 2 9.2 2.4 2.9 2 1 0 2 2 2 0 4Fe-4S binding domain ComA PF02679.10 gi|148642146|ref|YP_001272659.1| - 3e-88 294.9 0.5 3.3e-88 294.8 0.3 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) DDE_Tnp_IS240 PF13610.1 gi|148642147|ref|YP_001272660.1| - 2.2e-07 30.9 6.3 2.2e-07 30.9 0.6 2.6 1 1 1 2 2 2 1 DDE domain MULE PF10551.4 gi|148642147|ref|YP_001272660.1| - 3.7e-06 27.0 0.2 1.2e-05 25.3 0.1 1.9 2 0 0 2 2 2 1 MULE transposase domain zf-ISL3 PF14690.1 gi|148642147|ref|YP_001272660.1| - 0.00041 20.3 3.0 0.0036 17.2 2.1 2.4 1 1 1 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 rve PF00665.21 gi|148642147|ref|YP_001272660.1| - 0.0018 18.3 0.3 0.019 15.0 0.0 2.3 2 0 0 2 2 2 1 Integrase core domain Zn-ribbon_8 PF09723.5 gi|148642147|ref|YP_001272660.1| - 0.083 12.8 2.3 9.6 6.2 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|148642147|ref|YP_001272660.1| - 0.82 9.3 5.5 9.5 5.9 0.5 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) ApbE PF02424.10 gi|148642148|ref|YP_001272661.1| - 1.8e-21 76.5 0.0 2.4e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 ApbE family F420_oxidored PF03807.12 gi|148642149|ref|YP_001272662.1| - 1.7e-16 60.4 0.0 3.6e-16 59.3 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent P5CR_dimer PF14748.1 gi|148642149|ref|YP_001272662.1| - 7.5e-11 41.9 0.0 1.1e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation NAD_binding_2 PF03446.10 gi|148642149|ref|YP_001272662.1| - 1.2e-06 28.4 0.0 2.3e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|148642149|ref|YP_001272662.1| - 2e-05 24.4 0.6 6.6e-05 22.6 0.4 1.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|148642149|ref|YP_001272662.1| - 9.1e-05 21.9 1.6 0.00026 20.4 1.1 1.8 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|148642149|ref|YP_001272662.1| - 0.0031 17.6 0.0 0.006 16.6 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Gp_dh_N PF00044.19 gi|148642149|ref|YP_001272662.1| - 0.079 12.9 0.0 0.14 12.0 0.0 1.5 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UPF0058 PF01893.11 gi|148642150|ref|YP_001272663.1| - 2.3e-33 114.1 3.8 2.5e-33 113.9 2.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 UNC45-central PF11701.3 gi|148642150|ref|YP_001272663.1| - 0.012 15.2 0.4 0.016 14.8 0.3 1.3 1 0 0 1 1 1 0 Myosin-binding striated muscle assembly central Bestrophin PF01062.16 gi|148642150|ref|YP_001272663.1| - 0.042 12.7 0.2 0.045 12.6 0.2 1.0 1 0 0 1 1 1 0 Bestrophin, RFP-TM, chloride channel F_actin_bind PF08919.5 gi|148642150|ref|YP_001272663.1| - 0.05 13.3 0.9 1.1 8.9 0.1 2.2 1 1 1 2 2 2 0 F-actin binding Imm25 PF15571.1 gi|148642150|ref|YP_001272663.1| - 0.28 11.2 3.2 0.32 11.1 2.2 1.1 1 0 0 1 1 1 0 Immunity protein 25 GSCFA PF08885.6 gi|148642151|ref|YP_001272664.1| - 0.027 14.0 0.0 0.05 13.1 0.0 1.4 1 0 0 1 1 1 0 GSCFA family DUF1250 PF06855.7 gi|148642151|ref|YP_001272664.1| - 0.13 11.7 0.1 16 5.1 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1250) Big_1 PF02369.11 gi|148642152|ref|YP_001272665.1| - 2.4e-07 30.5 2.2 2.9e-07 30.3 0.8 1.6 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|148642152|ref|YP_001272665.1| - 2.7e-05 24.1 0.4 4.4e-05 23.4 0.3 1.3 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|148642152|ref|YP_001272665.1| - 0.00049 20.1 0.0 0.00079 19.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) YtkA PF13115.1 gi|148642152|ref|YP_001272665.1| - 0.001 19.3 0.1 0.002 18.4 0.1 1.5 1 0 0 1 1 1 1 YtkA-like DUF824 PF05688.6 gi|148642152|ref|YP_001272665.1| - 0.0012 18.4 0.1 0.0027 17.2 0.0 1.7 1 0 0 1 1 1 1 Salmonella repeat of unknown function (DUF824) DUF1628 PF07790.6 gi|148642152|ref|YP_001272665.1| - 0.0055 17.4 1.9 0.0055 17.4 1.3 1.9 2 1 0 2 2 2 1 Protein of unknown function (DUF1628) ABC2_membrane_3 PF12698.2 gi|148642152|ref|YP_001272665.1| - 0.044 12.8 7.8 0.06 12.3 5.4 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Cna_B PF05738.8 gi|148642152|ref|YP_001272665.1| - 0.071 12.8 3.3 0.19 11.5 2.1 1.9 1 1 0 1 1 1 0 Cna protein B-type domain A2M_N PF01835.14 gi|148642152|ref|YP_001272665.1| - 0.088 13.0 0.2 0.19 11.9 0.1 1.5 1 1 0 1 1 1 0 MG2 domain FixH PF05751.6 gi|148642152|ref|YP_001272665.1| - 0.13 12.0 3.4 0.16 11.7 0.0 2.2 1 1 1 2 2 2 0 FixH Sigma_reg_N PF13800.1 gi|148642152|ref|YP_001272665.1| - 0.16 12.0 1.8 0.3 11.1 1.2 1.5 1 0 0 1 1 1 0 Sigma factor regulator N-terminal FlgD_ig PF13860.1 gi|148642152|ref|YP_001272665.1| - 0.18 11.5 6.4 0.35 10.6 2.4 3.3 2 1 0 2 2 2 0 FlgD Ig-like domain Big_3_4 PF13754.1 gi|148642152|ref|YP_001272665.1| - 0.42 10.9 5.8 5.8 7.3 0.1 2.8 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 3) DUF3139 PF11337.3 gi|148642152|ref|YP_001272665.1| - 1.1 9.6 6.1 0.47 10.7 2.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) Cyc-maltodext_C PF10438.4 gi|148642152|ref|YP_001272665.1| - 1.8 8.6 6.2 2.1 8.4 0.4 2.9 2 1 1 3 3 3 0 Cyclo-malto-dextrinase C-terminal domain SoxE PF06525.6 gi|148642152|ref|YP_001272665.1| - 7.5 5.7 8.9 25 4.0 6.1 1.7 1 1 0 1 1 1 0 Sulfocyanin (SoxE) Ly49 PF08391.5 gi|148642152|ref|YP_001272665.1| - 8.8 6.4 6.7 29 4.8 4.7 1.9 1 1 0 1 1 1 0 Ly49-like protein, N-terminal region ABC2_membrane_3 PF12698.2 gi|148642153|ref|YP_001272666.1| - 7.2e-34 117.3 22.9 1e-33 116.8 15.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|148642153|ref|YP_001272666.1| - 8e-08 31.7 14.9 8e-08 31.7 10.3 2.8 2 1 0 2 2 2 1 ABC-2 type transporter DUF3533 PF12051.3 gi|148642153|ref|YP_001272666.1| - 1.5e-07 30.5 21.3 5.2e-07 28.7 14.7 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF3533) Orthoreo_P10 PF07204.6 gi|148642153|ref|YP_001272666.1| - 0.12 12.1 0.1 0.12 12.1 0.1 2.4 2 1 1 3 3 3 0 Orthoreovirus membrane fusion protein p10 TetR_N PF00440.18 gi|148642154|ref|YP_001272667.1| - 3.1e-12 45.9 0.0 2.5e-11 43.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_6 PF01418.12 gi|148642154|ref|YP_001272667.1| - 0.004 16.8 0.0 0.0089 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_7 PF02796.10 gi|148642154|ref|YP_001272667.1| - 0.11 12.4 0.1 0.26 11.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase GerE PF00196.14 gi|148642154|ref|YP_001272667.1| - 0.12 11.6 0.1 0.25 10.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_11 PF08279.7 gi|148642154|ref|YP_001272667.1| - 0.13 11.8 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain Phage_terminase PF10668.4 gi|148642154|ref|YP_001272667.1| - 0.19 11.5 1.2 0.35 10.6 0.0 2.0 2 1 0 2 2 2 0 Phage terminase small subunit DUF262 PF03235.9 gi|148642154|ref|YP_001272667.1| - 2.2 8.2 7.3 1.4 8.8 3.8 1.6 1 1 0 1 1 1 0 Protein of unknown function DUF262 PTA_PTB PF01515.14 gi|148642155|ref|YP_001272668.1| - 1.7e-07 30.5 0.3 0.00049 19.2 0.0 2.9 1 1 1 2 2 2 2 Phosphate acetyl/butaryl transferase Prenyltransf PF01255.14 gi|148642156|ref|YP_001272669.1| - 8.5e-84 280.1 0.2 1e-83 279.8 0.1 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase YbaB_DNA_bd PF02575.11 gi|148642156|ref|YP_001272669.1| - 0.031 14.1 0.6 0.88 9.5 0.0 2.3 2 0 0 2 2 2 0 YbaB/EbfC DNA-binding family TatD_DNase PF01026.16 gi|148642157|ref|YP_001272670.1| - 3.3e-67 226.3 1.4 3.7e-67 226.2 1.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|148642157|ref|YP_001272670.1| - 0.0011 18.6 0.0 0.0018 17.8 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase DUF3920 PF13058.1 gi|148642157|ref|YP_001272670.1| - 0.015 15.1 0.5 0.13 12.0 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3920) CEP19 PF14933.1 gi|148642157|ref|YP_001272670.1| - 0.3 11.3 3.4 0.26 11.5 0.3 2.2 2 1 0 2 2 2 0 CEP19-like protein Class_IIIsignal PF04021.7 gi|148642159|ref|YP_001272672.1| - 5.4e-07 29.1 3.7 9.1e-07 28.3 2.6 1.4 1 0 0 1 1 1 1 Class III signal peptide Epimerase PF01370.16 gi|148642159|ref|YP_001272672.1| - 0.0094 15.4 0.1 0.013 14.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ATP-synt_A PF00119.15 gi|148642160|ref|YP_001272673.1| - 0.026 14.0 0.4 0.033 13.7 0.2 1.1 1 0 0 1 1 1 0 ATP synthase A chain DUF960 PF06124.6 gi|148642160|ref|YP_001272673.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.5 1 1 0 2 2 2 0 Staphylococcal protein of unknown function (DUF960) EMP70 PF02990.11 gi|148642160|ref|YP_001272673.1| - 0.14 10.5 0.1 0.14 10.5 0.0 1.6 1 1 1 2 2 2 0 Endomembrane protein 70 DUF3139 PF11337.3 gi|148642160|ref|YP_001272673.1| - 1.8 8.8 4.5 3 8.1 2.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3139) TP_methylase PF00590.15 gi|148642161|ref|YP_001272674.1| - 5.5e-41 140.5 0.1 6.7e-41 140.3 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Meth_synt_2 PF01717.13 gi|148642162|ref|YP_001272675.1| - 1.7e-69 234.2 0.0 1.9e-69 234.1 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|148642162|ref|YP_001272675.1| - 0.00014 21.2 0.0 0.0003 20.1 0.0 1.5 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|148642162|ref|YP_001272675.1| - 0.069 12.0 0.2 0.15 10.9 0.1 1.5 2 0 0 2 2 2 0 Uroporphyrinogen decarboxylase (URO-D) DUF1894 PF08979.6 gi|148642163|ref|YP_001272676.1| - 1.7e-32 111.3 0.1 1.8e-32 111.1 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF1890 PF09001.6 gi|148642164|ref|YP_001272677.1| - 9.1e-57 190.9 0.2 1e-56 190.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) SBP_bac_3 PF00497.15 gi|148642164|ref|YP_001272677.1| - 0.0053 16.0 0.0 0.0066 15.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF4231 PF14015.1 gi|148642165|ref|YP_001272678.1| - 6.9 6.7 12.5 0.13 12.2 0.2 3.2 2 2 0 2 2 2 0 Protein of unknown function (DUF4231) DUF354 PF04007.7 gi|148642166|ref|YP_001272679.1| - 1.9e-135 451.0 1.9 2.1e-135 450.9 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_1_3 PF13528.1 gi|148642166|ref|YP_001272679.1| - 0.00039 19.7 0.0 0.32 10.1 0.0 2.5 2 1 1 3 3 3 2 Glycosyl transferase family 1 Epimerase_2 PF02350.14 gi|148642166|ref|YP_001272679.1| - 0.0027 16.5 0.0 0.0045 15.8 0.0 1.3 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase LpxB PF02684.10 gi|148642166|ref|YP_001272679.1| - 0.0073 14.9 0.0 0.011 14.3 0.0 1.2 1 0 0 1 1 1 1 Lipid-A-disaccharide synthetase cobW PF02492.14 gi|148642167|ref|YP_001272680.1| - 1.1e-41 142.2 2.1 1.4e-41 141.9 1.5 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|148642167|ref|YP_001272680.1| - 1.1e-10 40.7 2.7 1.7e-06 27.0 1.6 2.1 2 0 0 2 2 2 2 ArgK protein GTP_EFTU PF00009.22 gi|148642167|ref|YP_001272680.1| - 4.5e-05 22.9 2.0 0.088 12.2 0.2 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Flagellin_IN PF07196.8 gi|148642167|ref|YP_001272680.1| - 0.0011 18.9 1.7 0.0042 17.0 0.1 2.5 2 1 0 2 2 2 1 Flagellin hook IN motif NB-ARC PF00931.17 gi|148642167|ref|YP_001272680.1| - 0.0019 17.0 0.0 0.0029 16.5 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain Arf PF00025.16 gi|148642167|ref|YP_001272680.1| - 0.0029 16.8 0.1 0.089 12.0 0.0 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family MobB PF03205.9 gi|148642167|ref|YP_001272680.1| - 0.003 17.2 0.3 0.0078 15.9 0.1 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|148642167|ref|YP_001272680.1| - 0.0046 16.8 0.0 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|148642167|ref|YP_001272680.1| - 0.0055 17.0 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter DUF258 PF03193.11 gi|148642167|ref|YP_001272680.1| - 0.011 14.9 0.1 0.029 13.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|148642167|ref|YP_001272680.1| - 0.013 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|148642167|ref|YP_001272680.1| - 0.016 15.4 0.7 0.047 13.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|148642167|ref|YP_001272680.1| - 0.02 14.6 0.1 0.041 13.5 0.1 1.6 1 1 0 1 1 1 0 NTPase ATP_bind_1 PF03029.12 gi|148642167|ref|YP_001272680.1| - 0.021 14.3 0.3 0.4 10.1 0.0 2.2 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Arch_ATPase PF01637.13 gi|148642167|ref|YP_001272680.1| - 0.033 13.8 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Zeta_toxin PF06414.7 gi|148642167|ref|YP_001272680.1| - 0.034 13.2 0.0 0.055 12.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin IMS PF00817.15 gi|148642167|ref|YP_001272680.1| - 0.075 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 impB/mucB/samB family AAA_16 PF13191.1 gi|148642167|ref|YP_001272680.1| - 0.076 12.9 0.0 0.15 12.0 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|148642167|ref|YP_001272680.1| - 0.082 12.4 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|148642167|ref|YP_001272680.1| - 2.6 6.9 7.2 18 4.2 4.1 2.1 1 1 1 2 2 2 0 AAA ATPase domain HypA PF01155.14 gi|148642168|ref|YP_001272681.1| - 1.4e-32 111.7 0.9 1.5e-32 111.5 0.6 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|148642168|ref|YP_001272681.1| - 0.00047 19.5 0.4 0.26 10.8 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148642168|ref|YP_001272681.1| - 0.0012 17.9 1.5 1.2 8.4 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|148642168|ref|YP_001272681.1| - 0.012 15.5 3.4 2.7 7.9 0.1 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-LITAF-like PF10601.4 gi|148642168|ref|YP_001272681.1| - 0.017 15.0 1.7 1.5 8.7 0.0 2.9 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|148642168|ref|YP_001272681.1| - 0.017 14.5 3.0 0.61 9.6 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF3797 PF12677.2 gi|148642168|ref|YP_001272681.1| - 0.018 14.6 1.5 0.018 14.6 1.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-HYPF PF07503.7 gi|148642168|ref|YP_001272681.1| - 0.02 14.3 0.7 4.7 6.7 0.1 2.4 2 0 0 2 2 2 0 HypF finger TFIIS_C PF01096.13 gi|148642168|ref|YP_001272681.1| - 0.021 14.4 1.4 0.67 9.6 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|148642168|ref|YP_001272681.1| - 0.028 14.0 1.6 6 6.5 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|148642168|ref|YP_001272681.1| - 0.028 14.4 2.4 1.2 9.2 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|148642168|ref|YP_001272681.1| - 0.029 14.0 1.6 6.4 6.5 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|148642168|ref|YP_001272681.1| - 0.044 14.0 1.4 7.3 6.9 0.1 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Rubredoxin PF00301.15 gi|148642168|ref|YP_001272681.1| - 0.05 13.4 1.1 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin DNA_RNApol_7kD PF03604.8 gi|148642168|ref|YP_001272681.1| - 0.053 12.9 0.7 2.1 7.8 0.0 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Elf1 PF05129.8 gi|148642168|ref|YP_001272681.1| - 0.071 12.8 0.5 0.12 12.0 0.4 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DNA_ligase_ZBD PF03119.11 gi|148642168|ref|YP_001272681.1| - 0.1 12.3 3.2 1.7 8.4 0.0 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-Mss51 PF13824.1 gi|148642168|ref|YP_001272681.1| - 0.11 12.3 0.2 5 7.0 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1595 PF12760.2 gi|148642168|ref|YP_001272681.1| - 0.15 11.9 3.7 0.97 9.2 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF723 PF05265.8 gi|148642168|ref|YP_001272681.1| - 0.18 11.6 1.7 9.2 6.1 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF723) Cys_rich_KTR PF14205.1 gi|148642168|ref|YP_001272681.1| - 0.31 10.5 4.3 1 8.8 0.3 2.5 2 1 0 2 2 2 0 Cysteine-rich KTR UPF0547 PF10571.4 gi|148642168|ref|YP_001272681.1| - 0.31 10.7 4.1 2.6 7.8 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ogr_Delta PF04606.7 gi|148642168|ref|YP_001272681.1| - 0.43 10.2 3.8 11 5.7 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Ribosomal_S27e PF01667.12 gi|148642168|ref|YP_001272681.1| - 0.55 9.8 3.1 3.9 7.0 2.2 2.2 1 1 0 1 1 1 0 Ribosomal protein S27 FeS PF04060.8 gi|148642168|ref|YP_001272681.1| - 0.56 9.8 3.5 1.3 8.6 0.2 2.4 2 0 0 2 2 2 0 Putative Fe-S cluster Zn_Tnp_IS1 PF03811.8 gi|148642168|ref|YP_001272681.1| - 0.57 9.7 3.7 7.8 6.0 0.1 2.4 2 0 0 2 2 2 0 InsA N-terminal domain DZR PF12773.2 gi|148642168|ref|YP_001272681.1| - 0.58 10.0 3.0 3.8 7.4 2.2 1.9 1 1 1 2 2 2 0 Double zinc ribbon DUF1178 PF06676.6 gi|148642168|ref|YP_001272681.1| - 0.74 10.0 4.0 8.1 6.6 0.2 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1178) zf-IS66 PF13005.2 gi|148642168|ref|YP_001272681.1| - 2.3 8.2 5.4 13 5.8 0.3 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|148642168|ref|YP_001272681.1| - 5.8 6.3 7.0 7.7 5.9 0.4 2.7 3 0 0 3 3 2 0 TFIIB zinc-binding TM2 PF05154.11 gi|148642169|ref|YP_001272682.1| - 1.4e-06 28.3 1.7 2.6e-06 27.5 1.2 1.6 1 1 0 1 1 1 1 TM2 domain UT PF03253.9 gi|148642169|ref|YP_001272682.1| - 0.034 13.0 3.7 0.036 12.9 2.6 1.0 1 0 0 1 1 1 0 Urea transporter Claudin_2 PF13903.1 gi|148642169|ref|YP_001272682.1| - 0.49 10.0 3.0 0.51 10.0 2.1 1.0 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF3816 PF12822.2 gi|148642169|ref|YP_001272682.1| - 0.68 9.7 9.6 1 9.2 6.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) DUF4013 PF13197.1 gi|148642169|ref|YP_001272682.1| - 0.72 9.1 10.7 0.73 9.1 7.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) Abi PF02517.11 gi|148642169|ref|YP_001272682.1| - 1.8 8.7 4.6 2.3 8.4 3.2 1.1 1 0 0 1 1 1 0 CAAX protease self-immunity Tic20 PF09685.5 gi|148642169|ref|YP_001272682.1| - 5.2 7.0 10.5 8.4 6.4 7.3 1.4 1 1 0 1 1 1 0 Tic20-like protein MULE PF10551.4 gi|148642170|ref|YP_001272683.1| - 2.5e-07 30.7 0.4 2.7e-05 24.2 0.1 2.7 2 0 0 2 2 2 1 MULE transposase domain DDE_Tnp_IS240 PF13610.1 gi|148642170|ref|YP_001272683.1| - 0.00025 21.0 0.6 0.00025 21.0 0.4 2.7 2 1 0 3 3 3 1 DDE domain rve PF00665.21 gi|148642170|ref|YP_001272683.1| - 0.00077 19.5 0.8 0.0063 16.6 0.0 2.6 3 0 0 3 3 3 1 Integrase core domain HNH_5 PF14279.1 gi|148642170|ref|YP_001272683.1| - 0.0052 16.7 2.2 0.44 10.5 0.1 3.0 2 1 1 3 3 3 1 HNH endonuclease DDE_Tnp_IS66 PF03050.9 gi|148642170|ref|YP_001272683.1| - 0.0088 15.2 0.9 0.3 10.2 1.1 2.6 2 1 0 2 2 2 1 Transposase IS66 family zf-C2H2_6 PF13912.1 gi|148642170|ref|YP_001272683.1| - 0.013 15.3 0.8 0.066 13.1 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger SHOCT PF09851.4 gi|148642170|ref|YP_001272683.1| - 0.1 12.0 0.5 0.4 10.2 0.2 2.1 1 1 1 2 2 2 0 Short C-terminal domain OSCP PF00213.13 gi|148642170|ref|YP_001272683.1| - 0.99 9.2 6.9 0.22 11.3 1.0 2.4 3 0 0 3 3 3 0 ATP synthase delta (OSCP) subunit Mga PF05043.8 gi|148642171|ref|YP_001272684.1| - 0.11 12.8 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Mga helix-turn-helix domain DEAD PF00270.24 gi|148642172|ref|YP_001272685.1| - 4.3e-25 88.1 0.0 8.8e-25 87.1 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|148642172|ref|YP_001272685.1| - 4.3e-19 68.8 0.1 1.1e-18 67.5 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|148642172|ref|YP_001272685.1| - 2.4e-11 43.3 0.1 9.4e-11 41.4 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain TPR_11 PF13414.1 gi|148642172|ref|YP_001272685.1| - 3.7e-07 29.6 0.4 1.1e-06 28.1 0.3 1.8 1 0 0 1 1 1 1 TPR repeat TPR_16 PF13432.1 gi|148642172|ref|YP_001272685.1| - 4.4e-06 27.2 0.4 1e-05 26.0 0.2 1.7 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|148642172|ref|YP_001272685.1| - 0.00011 21.8 1.8 0.36 10.8 0.2 3.0 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|148642172|ref|YP_001272685.1| - 0.0005 19.9 0.7 0.0017 18.2 0.2 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|148642172|ref|YP_001272685.1| - 0.001 19.3 0.3 0.0021 18.3 0.2 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|148642172|ref|YP_001272685.1| - 0.011 15.3 4.0 3.4 7.6 0.5 3.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_17 PF13431.1 gi|148642172|ref|YP_001272685.1| - 0.074 13.2 0.0 0.38 11.0 0.0 2.3 1 0 0 1 1 1 0 Tetratricopeptide repeat T2SE PF00437.15 gi|148642172|ref|YP_001272685.1| - 0.13 11.1 0.0 0.25 10.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein UvrD-helicase PF00580.16 gi|148642173|ref|YP_001272686.1| - 5.9e-50 170.3 5.6 5.9e-50 170.3 3.9 2.3 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|148642173|ref|YP_001272686.1| - 2.7e-14 53.4 13.3 2.6e-13 50.1 4.7 3.8 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|148642173|ref|YP_001272686.1| - 2.5e-09 36.7 0.0 5.1e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_11 PF13086.1 gi|148642173|ref|YP_001272686.1| - 9.6e-06 25.3 0.7 6.8e-05 22.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.1 gi|148642173|ref|YP_001272686.1| - 6.7e-05 22.9 0.2 0.012 15.7 0.0 3.2 3 0 0 3 3 3 1 UvrD-like helicase C-terminal domain DEAD PF00270.24 gi|148642173|ref|YP_001272686.1| - 0.003 17.0 0.1 0.0075 15.7 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Herpes_U44 PF04533.8 gi|148642173|ref|YP_001272686.1| - 0.0051 16.1 0.0 0.012 14.9 0.0 1.5 1 0 0 1 1 1 1 Herpes virus U44 protein AAA_30 PF13604.1 gi|148642173|ref|YP_001272686.1| - 0.0086 15.6 0.0 0.021 14.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.2 gi|148642174|ref|YP_001272687.1| - 1.3e-17 64.0 0.4 3e-16 59.6 0.3 2.2 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|148642174|ref|YP_001272687.1| - 0.098 12.5 8.6 1.6 8.6 0.2 3.0 2 2 0 2 2 2 0 Domain of unknown function DUF83 DUF169 PF02596.10 gi|148642175|ref|YP_001272688.1| - 6.6e-64 215.2 0.0 7.4e-64 215.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 NTP_transf_3 PF12804.2 gi|148642176|ref|YP_001272689.1| - 7.4e-18 65.1 0.0 8.5e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|148642176|ref|YP_001272689.1| - 3.6e-05 23.4 0.0 4.9e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|148642176|ref|YP_001272689.1| - 4.7e-05 23.1 0.2 0.0001 21.9 0.1 1.5 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|148642176|ref|YP_001272689.1| - 0.00021 20.6 0.0 0.0003 20.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Glycos_transf_2 PF00535.21 gi|148642176|ref|YP_001272689.1| - 0.003 17.2 0.5 0.0053 16.4 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Mur_ligase_M PF08245.7 gi|148642178|ref|YP_001272691.1| - 2.5e-23 83.1 0.4 1.4e-22 80.6 0.2 2.0 1 1 0 1 1 1 1 Mur ligase middle domain NAD_binding_2 PF03446.10 gi|148642178|ref|YP_001272691.1| - 0.0051 16.6 0.1 0.033 14.0 0.0 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase DBI_PRT PF02277.12 gi|148642178|ref|YP_001272691.1| - 0.016 14.3 0.0 0.035 13.2 0.1 1.4 2 0 0 2 2 2 0 Phosphoribosyltransferase Ldl_recept_b PF00058.12 gi|148642178|ref|YP_001272691.1| - 0.047 14.0 0.2 39 4.6 0.0 3.5 2 1 0 2 2 2 0 Low-density lipoprotein receptor repeat class B F420_oxidored PF03807.12 gi|148642179|ref|YP_001272692.1| - 0.095 13.1 0.0 4.8 7.6 0.0 2.2 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent OTCace PF00185.19 gi|148642179|ref|YP_001272692.1| - 0.13 12.0 0.0 0.72 9.7 0.0 1.9 1 1 1 2 2 2 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AAA_21 PF13304.1 gi|148642180|ref|YP_001272693.1| - 3.9e-15 56.6 21.1 5.5e-09 36.4 6.0 4.7 1 1 3 4 4 2 2 AAA domain AAA_23 PF13476.1 gi|148642180|ref|YP_001272693.1| - 1.6e-14 54.6 48.4 1.6e-14 54.6 33.5 6.1 1 1 2 3 3 1 1 AAA domain SMC_N PF02463.14 gi|148642180|ref|YP_001272693.1| - 6.6e-12 45.1 56.6 2e-11 43.5 39.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|148642180|ref|YP_001272693.1| - 3.2e-08 32.9 0.1 6.7e-08 31.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad50_zn_hook PF04423.9 gi|148642180|ref|YP_001272693.1| - 3e-06 26.5 3.0 3e-06 26.5 2.1 4.2 4 0 0 4 4 4 1 Rad50 zinc hook motif SbcCD_C PF13558.1 gi|148642180|ref|YP_001272693.1| - 1.8e-05 24.5 0.0 4.1e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|148642180|ref|YP_001272693.1| - 2.3e-05 23.6 43.5 2.3e-05 23.6 30.1 3.9 1 1 1 2 2 1 1 AAA ATPase domain ABC_tran PF00005.22 gi|148642180|ref|YP_001272693.1| - 0.00042 20.6 0.0 0.00042 20.6 0.0 5.1 2 1 1 3 3 2 1 ABC transporter AAA_27 PF13514.1 gi|148642180|ref|YP_001272693.1| - 0.015 13.0 0.1 0.015 13.0 0.1 5.0 3 1 0 5 5 5 0 AAA domain MukB PF04310.7 gi|148642180|ref|YP_001272693.1| - 0.028 13.7 1.0 0.063 12.5 0.0 2.1 2 0 0 2 2 2 0 MukB N-terminal AAA_22 PF13401.1 gi|148642180|ref|YP_001272693.1| - 0.039 14.0 1.2 0.15 12.1 0.0 2.7 3 0 0 3 3 2 0 AAA domain AAA_16 PF13191.1 gi|148642180|ref|YP_001272693.1| - 0.051 13.5 0.0 0.21 11.5 0.0 2.1 1 0 0 1 1 1 0 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|148642180|ref|YP_001272693.1| - 0.053 12.9 0.0 0.16 11.4 0.0 1.8 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_13 PF13166.1 gi|148642180|ref|YP_001272693.1| - 1 7.7 99.3 0.24 9.8 0.1 6.2 1 1 6 7 7 6 0 AAA domain FdhE PF04216.7 gi|148642180|ref|YP_001272693.1| - 4.9 6.7 9.4 23 4.5 3.6 3.2 2 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation Metallophos PF00149.23 gi|148642181|ref|YP_001272694.1| - 1.8e-19 69.9 2.9 3.9e-19 68.8 2.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|148642181|ref|YP_001272694.1| - 1.2e-17 64.2 0.0 1.7e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF87 PF01935.12 gi|148642182|ref|YP_001272695.1| - 5.5e-44 150.6 1.7 5.5e-44 150.6 1.1 1.8 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|148642182|ref|YP_001272695.1| - 2.8e-20 72.9 0.9 1.7e-11 44.1 0.1 2.2 1 1 0 2 2 2 2 AAA-like domain DUF853 PF05872.7 gi|148642182|ref|YP_001272695.1| - 2.5e-11 42.6 0.1 1.9e-05 23.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.5 gi|148642182|ref|YP_001272695.1| - 1.5e-09 37.5 2.5 4.9e-09 35.9 1.7 1.9 1 0 0 1 1 1 1 HAS barrel domain TrwB_AAD_bind PF10412.4 gi|148642182|ref|YP_001272695.1| - 2.6e-05 23.0 0.0 8.8e-05 21.2 0.0 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|148642182|ref|YP_001272695.1| - 0.00016 21.2 0.0 0.0046 16.4 0.0 2.6 2 1 0 2 2 2 1 FtsK/SpoIIIE family T4SS-DNA_transf PF02534.9 gi|148642182|ref|YP_001272695.1| - 0.013 14.1 0.1 0.02 13.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer Zot PF05707.7 gi|148642182|ref|YP_001272695.1| - 0.1 12.0 0.0 0.27 10.6 0.0 1.7 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) NurA PF09376.5 gi|148642183|ref|YP_001272696.1| - 2.7e-33 115.5 2.9 3.3e-33 115.2 2.0 1.1 1 0 0 1 1 1 1 NurA domain HTH_25 PF13413.1 gi|148642183|ref|YP_001272696.1| - 0.00026 20.5 0.0 0.0007 19.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TetM_leader PF08076.6 gi|148642183|ref|YP_001272696.1| - 0.038 13.5 0.1 0.086 12.4 0.0 1.6 1 0 0 1 1 1 0 Tetracycline resistance determinant leader peptide PcrB PF01884.12 gi|148642184|ref|YP_001272697.1| - 1e-86 289.9 1.5 1.2e-86 289.7 1.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|148642184|ref|YP_001272697.1| - 0.0086 15.3 0.5 0.018 14.3 0.1 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.14 gi|148642184|ref|YP_001272697.1| - 0.12 11.4 0.6 0.21 10.6 0.4 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DHO_dh PF01180.16 gi|148642184|ref|YP_001272697.1| - 0.55 9.1 3.6 0.37 9.7 1.0 1.6 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Ribosomal_L40e PF01020.12 gi|148642185|ref|YP_001272698.1| - 0.0001 21.8 3.7 0.00011 21.6 2.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|148642185|ref|YP_001272698.1| - 0.0013 18.5 1.0 0.0014 18.4 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|148642185|ref|YP_001272698.1| - 0.0021 17.1 2.2 0.0027 16.8 1.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148642185|ref|YP_001272698.1| - 0.0036 16.7 1.9 0.005 16.2 1.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-DHHC PF01529.15 gi|148642185|ref|YP_001272698.1| - 0.008 15.5 0.5 0.0081 15.5 0.3 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase zf-RanBP PF00641.13 gi|148642185|ref|YP_001272698.1| - 0.0098 14.9 3.7 0.014 14.5 2.6 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DUF2082 PF09855.4 gi|148642185|ref|YP_001272698.1| - 0.13 12.1 4.5 0.44 10.4 0.2 2.1 1 1 2 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn_clus PF00172.13 gi|148642185|ref|YP_001272698.1| - 0.14 12.1 2.3 0.17 11.8 1.6 1.2 1 0 0 1 1 1 0 Fungal Zn(2)-Cys(6) binuclear cluster domain DNA_RNApol_7kD PF03604.8 gi|148642185|ref|YP_001272698.1| - 0.29 10.6 3.4 0.59 9.6 2.3 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|148642185|ref|YP_001272698.1| - 0.9 9.2 5.7 14 5.4 3.6 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF367 PF04034.8 gi|148642186|ref|YP_001272699.1| - 7.7e-50 167.7 0.0 9.6e-50 167.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|148642186|ref|YP_001272699.1| - 3.5e-06 26.4 0.9 5.2e-06 25.9 0.6 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Bundlin PF05307.6 gi|148642187|ref|YP_001272700.1| - 0.078 12.8 1.5 0.13 12.0 0.5 1.9 1 1 1 2 2 2 0 Bundlin CTP_transf_2 PF01467.21 gi|148642189|ref|YP_001272702.1| - 1e-17 64.6 0.1 1.9e-16 60.5 0.0 2.0 1 1 1 2 2 2 2 Cytidylyltransferase ATP-sulfurylase PF01747.12 gi|148642189|ref|YP_001272702.1| - 0.042 13.1 0.0 1.4 8.2 0.0 2.1 2 0 0 2 2 2 0 ATP-sulfurylase HIGH_NTase1 PF05636.6 gi|148642189|ref|YP_001272702.1| - 0.058 12.4 0.0 6 5.7 0.0 2.1 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase MoaE PF02391.12 gi|148642190|ref|YP_001272703.1| - 3.2e-24 84.9 0.1 3.8e-24 84.7 0.1 1.1 1 0 0 1 1 1 1 MoaE protein SHS2_FTSA PF02491.15 gi|148642190|ref|YP_001272703.1| - 0.013 15.4 0.0 0.035 13.9 0.0 1.8 1 0 0 1 1 1 0 SHS2 domain inserted in FTSA DUF2443 PF10398.4 gi|148642190|ref|YP_001272703.1| - 0.11 12.2 0.2 0.11 12.2 0.2 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2443) TOBE PF03459.12 gi|148642191|ref|YP_001272704.1| - 7.5e-14 51.5 0.1 8.2e-14 51.4 0.1 1.0 1 0 0 1 1 1 1 TOBE domain AbrB-like PF14250.1 gi|148642191|ref|YP_001272704.1| - 0.076 12.9 0.0 0.088 12.7 0.0 1.2 1 0 0 1 1 1 0 AbrB-like transcriptional regulator DUF1953 PF09196.5 gi|148642191|ref|YP_001272704.1| - 0.13 11.9 0.2 0.21 11.2 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1953) UPF0066 PF01980.11 gi|148642192|ref|YP_001272705.1| - 7.8e-41 138.8 0.0 1e-40 138.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 DUF3969 PF13108.1 gi|148642192|ref|YP_001272705.1| - 0.08 12.6 0.2 0.24 11.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3969) 4HBT_2 PF13279.1 gi|148642193|ref|YP_001272706.1| - 5.5e-10 39.7 0.0 7e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|148642193|ref|YP_001272706.1| - 4.5e-08 33.0 0.0 7.4e-08 32.4 0.0 1.4 1 1 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|148642193|ref|YP_001272706.1| - 0.00051 19.0 0.0 0.15 10.9 0.0 2.1 1 1 1 2 2 2 2 Acyl-ACP thioesterase 4HBT_3 PF13622.1 gi|148642193|ref|YP_001272706.1| - 0.11 12.2 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily Peptidase_M42 PF05343.9 gi|148642194|ref|YP_001272707.1| - 2e-103 345.1 2.7 2.3e-103 344.9 1.9 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M18 PF02127.10 gi|148642194|ref|YP_001272707.1| - 0.00023 19.7 0.2 0.64 8.4 0.0 2.7 2 1 1 3 3 3 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.12 gi|148642194|ref|YP_001272707.1| - 0.012 15.3 0.0 0.086 12.5 0.0 2.1 2 0 0 2 2 2 0 Peptidase family M28 FrhB_FdhB_C PF04432.8 gi|148642195|ref|YP_001272708.1| - 1.9e-43 147.6 0.3 1.9e-43 147.6 0.2 1.8 2 1 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|148642195|ref|YP_001272708.1| - 1.9e-20 72.4 0.1 3.9e-20 71.5 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|148642195|ref|YP_001272708.1| - 7.6e-05 22.1 4.3 7.6e-05 22.1 3.0 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148642195|ref|YP_001272708.1| - 0.00051 20.2 12.2 0.00051 20.2 8.5 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642195|ref|YP_001272708.1| - 0.0027 17.4 11.6 0.0027 17.4 8.1 2.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148642195|ref|YP_001272708.1| - 0.009 15.8 2.8 0.009 15.8 2.0 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|148642195|ref|YP_001272708.1| - 0.011 15.6 3.4 0.011 15.6 2.4 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148642195|ref|YP_001272708.1| - 0.011 16.4 13.1 0.26 12.0 1.8 4.0 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|148642195|ref|YP_001272708.1| - 0.015 15.6 11.8 0.015 15.6 8.2 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|148642195|ref|YP_001272708.1| - 0.017 15.6 5.7 0.017 15.6 4.0 3.5 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148642195|ref|YP_001272708.1| - 0.057 13.7 1.9 0.057 13.7 1.3 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|148642195|ref|YP_001272708.1| - 0.094 12.7 17.3 0.23 11.5 6.2 3.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642195|ref|YP_001272708.1| - 8 6.4 20.0 0.15 11.9 8.2 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148642195|ref|YP_001272708.1| - 8.1 6.9 18.3 1.1 9.7 5.6 2.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148642196|ref|YP_001272709.1| - 1e-08 34.4 15.6 0.00011 21.6 4.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|148642196|ref|YP_001272709.1| - 5.2e-07 29.2 16.9 0.0013 18.5 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148642196|ref|YP_001272709.1| - 4.3e-05 23.2 14.3 9.6e-05 22.1 9.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642196|ref|YP_001272709.1| - 4.6e-05 23.6 15.1 0.043 14.0 6.1 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148642196|ref|YP_001272709.1| - 8.8e-05 22.8 13.8 8.8e-05 22.8 9.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Flavodoxin_5 PF12724.2 gi|148642196|ref|YP_001272709.1| - 0.00011 22.2 0.0 0.00051 20.0 0.0 2.0 2 0 0 2 2 2 1 Flavodoxin domain Fer4_16 PF13484.1 gi|148642196|ref|YP_001272709.1| - 0.00041 21.0 10.9 0.04 14.6 1.0 2.9 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Flavodoxin_1 PF00258.20 gi|148642196|ref|YP_001272709.1| - 0.002 18.1 0.0 0.0037 17.2 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin Fer4_4 PF12800.2 gi|148642196|ref|YP_001272709.1| - 0.0024 18.0 10.1 0.34 11.3 1.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|148642196|ref|YP_001272709.1| - 0.0045 16.8 15.0 0.16 11.9 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Flavodoxin_3 PF12641.2 gi|148642196|ref|YP_001272709.1| - 0.0073 15.7 0.0 2.1 7.7 0.0 2.2 2 0 0 2 2 2 1 Flavodoxin domain Fer4_21 PF14697.1 gi|148642196|ref|YP_001272709.1| - 0.031 14.1 14.9 0.097 12.5 10.2 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|148642196|ref|YP_001272709.1| - 0.055 14.0 10.5 0.47 11.0 0.4 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Flavodoxin_4 PF12682.2 gi|148642196|ref|YP_001272709.1| - 0.086 12.2 0.0 8.7 5.6 0.0 2.2 1 1 1 2 2 2 0 Flavodoxin Fer4_8 PF13183.1 gi|148642196|ref|YP_001272709.1| - 0.098 12.6 16.9 0.16 12.0 8.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642196|ref|YP_001272709.1| - 0.15 12.4 16.0 0.19 12.1 1.6 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF150 PF02576.12 gi|148642196|ref|YP_001272709.1| - 0.15 11.6 0.3 0.32 10.5 0.2 1.5 2 0 0 2 2 2 0 Uncharacterised BCR, YhbC family COG0779 Fer4_3 PF12798.2 gi|148642196|ref|YP_001272709.1| - 0.15 12.6 16.2 1.8 9.3 3.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148642196|ref|YP_001272709.1| - 0.96 9.9 13.9 4.7 7.7 3.6 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|148642196|ref|YP_001272709.1| - 1 9.8 13.0 0.25 11.7 0.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain HEAT_2 PF13646.1 gi|148642197|ref|YP_001272710.1| - 1.9e-09 37.7 12.2 6.1 7.2 0.0 7.5 2 1 1 3 3 3 2 HEAT repeats HEAT PF02985.17 gi|148642197|ref|YP_001272710.1| - 8.8e-06 25.3 7.2 0.93 9.7 0.0 7.1 8 0 0 8 8 8 2 HEAT repeat Clathrin PF00637.15 gi|148642197|ref|YP_001272710.1| - 0.00027 20.5 25.7 0.0051 16.4 1.1 4.7 3 2 1 5 5 5 3 Region in Clathrin and VPS DUF2411 PF10304.4 gi|148642197|ref|YP_001272710.1| - 0.014 14.8 1.9 3 7.4 0.1 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF2411) RNase_H_2 PF13482.1 gi|148642198|ref|YP_001272711.1| - 2.2e-32 112.1 0.0 4.3e-32 111.1 0.0 1.5 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.14 gi|148642198|ref|YP_001272711.1| - 7e-05 21.8 0.1 0.00013 20.9 0.1 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain Cdd1 PF11731.3 gi|148642198|ref|YP_001272711.1| - 0.0074 16.1 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_B_exo2 PF10108.4 gi|148642198|ref|YP_001272711.1| - 0.016 14.7 0.0 0.04 13.4 0.0 1.6 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF3990 PF13151.1 gi|148642198|ref|YP_001272711.1| - 0.018 14.4 0.1 0.038 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3990) TfoX_C PF04994.8 gi|148642198|ref|YP_001272711.1| - 0.022 14.6 0.0 0.049 13.5 0.0 1.6 1 0 0 1 1 1 0 TfoX C-terminal domain HHH_5 PF14520.1 gi|148642198|ref|YP_001272711.1| - 0.089 12.9 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF4118 PF13493.1 gi|148642199|ref|YP_001272712.1| - 0.086 13.0 0.3 0.086 13.0 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4118) Imm46 PF15585.1 gi|148642199|ref|YP_001272712.1| - 0.14 12.2 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 Immunity protein 46 DUF4199 PF13858.1 gi|148642199|ref|YP_001272712.1| - 0.71 9.7 13.0 0.098 12.5 5.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) ABC2_membrane_3 PF12698.2 gi|148642199|ref|YP_001272712.1| - 4 6.3 14.2 5 6.0 9.9 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Vma12 PF11712.3 gi|148642199|ref|YP_001272712.1| - 8.3 6.1 5.8 3.7 7.2 1.6 2.0 2 1 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF137 PF02006.11 gi|148642200|ref|YP_001272713.1| - 3.9e-76 254.3 2.0 4.7e-76 254.1 1.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 AAA_18 PF13238.1 gi|148642201|ref|YP_001272714.1| - 8.5e-14 51.9 0.4 1.6e-13 51.1 0.3 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|148642201|ref|YP_001272714.1| - 1.6e-12 48.3 0.5 3.1e-12 47.3 0.1 1.6 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|148642201|ref|YP_001272714.1| - 4.4e-08 33.1 0.0 6e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|148642201|ref|YP_001272714.1| - 4.4e-07 29.8 0.6 5.8e-07 29.5 0.4 1.3 1 1 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|148642201|ref|YP_001272714.1| - 0.0064 15.9 0.4 0.035 13.5 0.1 1.9 1 1 1 2 2 2 1 Dephospho-CoA kinase DUF106 PF01956.11 gi|148642201|ref|YP_001272714.1| - 0.081 12.4 0.2 0.2 11.1 0.0 1.7 2 0 0 2 2 2 0 Integral membrane protein DUF106 Cytidylate_kin2 PF13189.1 gi|148642201|ref|YP_001272714.1| - 0.18 11.7 3.0 1 9.2 2.1 2.1 1 1 0 1 1 1 0 Cytidylate kinase-like family Torsin PF06309.6 gi|148642201|ref|YP_001272714.1| - 0.2 11.5 0.7 14 5.6 0.0 3.1 2 1 1 4 4 4 0 Torsin Fcf2 PF08698.6 gi|148642201|ref|YP_001272714.1| - 0.55 10.2 3.1 0.4 10.7 0.2 2.0 2 1 0 2 2 2 0 Fcf2 pre-rRNA processing Ribosomal_L35p PF01632.14 gi|148642201|ref|YP_001272714.1| - 0.62 10.0 2.7 0.37 10.7 0.5 1.7 2 0 0 2 2 2 0 Ribosomal protein L35 ATP_bind_4 PF01902.12 gi|148642202|ref|YP_001272715.1| - 1.7e-81 272.7 2.5 1.9e-81 272.5 1.7 1.0 1 0 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|148642202|ref|YP_001272715.1| - 0.0017 17.6 0.1 0.003 16.8 0.0 1.6 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|148642202|ref|YP_001272715.1| - 0.017 13.6 0.0 0.025 13.1 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase Kei1 PF08552.6 gi|148642203|ref|YP_001272716.1| - 0.028 14.0 1.3 0.36 10.4 0.0 2.1 2 0 0 2 2 2 0 Inositolphosphorylceramide synthase subunit Kei1 DUF2422 PF10337.4 gi|148642203|ref|YP_001272716.1| - 1.3 7.6 5.2 2.6 6.7 3.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) DUF4229 PF14012.1 gi|148642203|ref|YP_001272716.1| - 3.8 7.4 8.0 0.46 10.4 1.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) Baculo_11_kDa PF06143.6 gi|148642203|ref|YP_001272716.1| - 9.5 5.6 10.0 5.4 6.4 0.2 2.5 2 0 0 2 2 2 0 Baculovirus 11 kDa family SseB PF07179.7 gi|148642204|ref|YP_001272717.1| - 2e-18 66.3 0.0 3.1e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 SseB protein N-terminal domain Class_IIIsignal PF04021.7 gi|148642205|ref|YP_001272718.1| - 6.2e-08 32.0 1.1 9.3e-08 31.5 0.8 1.3 1 0 0 1 1 1 1 Class III signal peptide DUF948 PF06103.6 gi|148642205|ref|YP_001272718.1| - 0.052 13.4 1.0 0.074 12.9 0.6 1.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Peptidase_A24 PF01478.13 gi|148642206|ref|YP_001272719.1| - 1e-13 51.3 9.8 1e-13 51.3 6.8 2.1 2 1 0 2 2 2 1 Type IV leader peptidase family Arc_PepC_II PF06847.6 gi|148642206|ref|YP_001272719.1| - 0.0058 17.0 0.8 0.0058 17.0 0.6 2.6 3 1 0 3 3 3 1 Archaeal Peptidase A24 C-terminus Type II CTP_synth_N PF06418.9 gi|148642207|ref|YP_001272720.1| - 2.7e-128 426.8 0.1 3.6e-128 426.4 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|148642207|ref|YP_001272720.1| - 1.4e-49 168.1 0.0 2.4e-49 167.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|148642207|ref|YP_001272720.1| - 3.6e-12 46.1 0.0 1.7e-10 40.7 0.0 2.2 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.18 gi|148642207|ref|YP_001272720.1| - 1.8e-07 30.7 0.0 3.5e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Aldo_ket_red PF00248.16 gi|148642208|ref|YP_001272721.1| - 4e-42 143.9 0.0 5.1e-42 143.6 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_9 PF13187.1 gi|148642208|ref|YP_001272721.1| - 6.8e-10 39.0 5.4 1.7e-09 37.7 3.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642208|ref|YP_001272721.1| - 2.9e-09 37.1 5.9 6.1e-09 36.1 4.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148642208|ref|YP_001272721.1| - 4.7e-09 36.1 3.6 9.4e-09 35.1 2.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148642208|ref|YP_001272721.1| - 3.1e-08 33.9 1.9 0.0058 17.0 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642208|ref|YP_001272721.1| - 2.3e-07 30.4 4.8 7.5e-07 28.8 3.3 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148642208|ref|YP_001272721.1| - 2.8e-05 24.3 7.7 0.00014 22.1 5.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148642208|ref|YP_001272721.1| - 6e-05 23.0 12.4 0.00086 19.4 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|148642208|ref|YP_001272721.1| - 0.00016 21.4 9.9 0.015 15.1 1.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|148642208|ref|YP_001272721.1| - 0.00066 19.4 7.4 0.068 13.0 0.8 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642208|ref|YP_001272721.1| - 0.002 18.8 5.9 0.0057 17.3 4.1 1.8 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|148642208|ref|YP_001272721.1| - 0.0046 16.4 15.5 0.037 13.6 3.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|148642208|ref|YP_001272721.1| - 0.025 14.4 17.1 0.29 11.0 3.8 2.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|148642208|ref|YP_001272721.1| - 0.047 14.2 14.8 0.15 12.7 2.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|148642208|ref|YP_001272721.1| - 0.081 12.5 8.1 1.1 8.9 1.0 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|148642208|ref|YP_001272721.1| - 0.22 12.1 5.2 3.6 8.2 0.3 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Esterase PF00756.15 gi|148642209|ref|YP_001272722.1| - 3.2e-18 66.0 0.0 3.9e-18 65.7 0.0 1.3 1 1 0 1 1 1 1 Putative esterase Abhydrolase_2 PF02230.11 gi|148642209|ref|YP_001272722.1| - 2.7e-05 23.7 0.0 0.0034 16.8 0.0 2.6 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase Abhydrolase_3 PF07859.8 gi|148642209|ref|YP_001272722.1| - 5e-05 22.9 0.0 0.00011 21.8 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|148642209|ref|YP_001272722.1| - 0.0001 22.0 0.0 0.00012 21.8 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Cytochrom_B_N PF00033.14 gi|148642210|ref|YP_001272723.1| - 0.036 13.4 0.5 0.039 13.3 0.3 1.0 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF3789 PF12664.2 gi|148642211|ref|YP_001272724.1| - 0.31 10.3 5.7 0.2 10.9 2.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3789) MatE PF01554.13 gi|148642212|ref|YP_001272725.1| - 5.4e-48 162.6 35.0 1.6e-25 89.6 8.9 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|148642212|ref|YP_001272725.1| - 1.6e-07 31.1 9.8 1.6e-07 31.1 6.8 4.5 2 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain PhosphMutase PF10143.4 gi|148642213|ref|YP_001272726.1| - 1.4e-51 174.5 0.0 2.1e-51 174.0 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|148642213|ref|YP_001272726.1| - 2.2e-46 158.3 0.1 2.5e-46 158.1 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily UDPG_MGDP_dh_N PF03721.9 gi|148642213|ref|YP_001272726.1| - 0.1 11.9 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Homoserine_dh PF00742.14 gi|148642214|ref|YP_001272727.1| - 1.2e-53 181.4 1.0 2e-53 180.7 0.3 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|148642214|ref|YP_001272727.1| - 2.8e-08 34.1 0.3 9e-08 32.5 0.2 1.8 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|148642214|ref|YP_001272727.1| - 0.0014 18.2 0.7 0.0037 16.8 0.3 1.9 2 1 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NTP_transferase PF00483.18 gi|148642214|ref|YP_001272727.1| - 0.047 12.9 0.1 2.5 7.3 0.0 2.4 1 1 2 3 3 3 0 Nucleotidyl transferase TrkA_N PF02254.13 gi|148642214|ref|YP_001272727.1| - 0.088 12.8 0.2 0.47 10.4 0.1 2.3 3 0 0 3 3 3 0 TrkA-N domain ACT PF01842.20 gi|148642215|ref|YP_001272728.1| - 0.001 18.5 1.3 0.0044 16.4 0.1 2.1 1 1 1 2 2 2 2 ACT domain Saccharop_dh_N PF04455.7 gi|148642215|ref|YP_001272728.1| - 0.0031 17.5 1.9 0.047 13.8 0.7 2.4 1 1 1 2 2 2 1 LOR/SDH bifunctional enzyme conserved region ACT_4 PF13291.1 gi|148642215|ref|YP_001272728.1| - 0.008 16.4 1.0 1.2 9.4 0.0 2.3 1 1 1 2 2 2 2 ACT domain TMCO5 PF14992.1 gi|148642216|ref|YP_001272729.1| - 0.031 13.4 0.4 0.032 13.3 0.3 1.0 1 0 0 1 1 1 0 TMCO5 family Glu-tRNAGln PF02686.10 gi|148642216|ref|YP_001272729.1| - 0.036 13.8 0.1 0.045 13.5 0.1 1.2 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit Methylase_S PF01420.14 gi|148642217|ref|YP_001272730.1| - 2.1e-05 24.5 2.9 2.1e-05 24.5 2.0 1.5 2 0 0 2 2 2 1 Type I restriction modification DNA specificity domain Methylase_S PF01420.14 gi|148642218|ref|YP_001272731.1| - 2.1e-22 79.8 13.9 1.9e-15 57.2 3.9 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DUF4200 PF13863.1 gi|148642218|ref|YP_001272731.1| - 0.11 12.5 1.4 0.17 11.8 1.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) Effector_1 PF04518.7 gi|148642219|ref|YP_001272732.1| - 0.063 12.2 2.3 0.079 11.9 1.6 1.1 1 0 0 1 1 1 0 Effector from type III secretion system Asn_synthase PF00733.16 gi|148642220|ref|YP_001272733.1| - 6.4e-58 196.2 0.1 1e-57 195.5 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|148642220|ref|YP_001272733.1| - 4e-20 71.8 0.0 1.3e-19 70.1 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|148642220|ref|YP_001272733.1| - 1.1e-19 70.7 0.1 7.1e-19 68.0 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|148642220|ref|YP_001272733.1| - 1.6e-07 30.4 0.1 2.8e-06 26.2 0.1 2.4 1 1 1 2 2 2 1 Glutamine amidotransferases class-II NAD_synthase PF02540.12 gi|148642220|ref|YP_001272733.1| - 6e-06 25.3 0.2 9.5e-06 24.6 0.1 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|148642220|ref|YP_001272733.1| - 5.8e-05 21.8 0.1 8.9e-05 21.2 0.1 1.2 1 0 0 1 1 1 1 tRNA methyl transferase MpPF1 PF07668.6 gi|148642220|ref|YP_001272733.1| - 0.0032 16.6 0.6 0.0065 15.6 0.0 1.7 2 0 0 2 2 2 1 M penetrans paralogue family 1 QueC PF06508.8 gi|148642220|ref|YP_001272733.1| - 0.0037 16.5 0.1 0.0059 15.9 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC DUF1933 PF09147.5 gi|148642220|ref|YP_001272733.1| - 0.011 15.2 0.1 0.02 14.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1933) DUF3557 PF12078.3 gi|148642220|ref|YP_001272733.1| - 0.058 13.1 0.4 0.34 10.6 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3557) Adeno_E3_CR1 PF02440.10 gi|148642221|ref|YP_001272734.1| - 0.097 12.1 0.4 0.14 11.6 0.3 1.4 1 1 0 1 1 1 0 Adenovirus E3 region protein CR1 Dr_adhesin PF12393.3 gi|148642221|ref|YP_001272734.1| - 0.28 11.2 0.9 15 5.8 0.1 2.1 2 0 0 2 2 2 0 Dr family adhesin CRISPR_Cas2 PF09827.4 gi|148642223|ref|YP_001272736.1| - 4.1e-23 81.3 2.2 4.7e-23 81.1 1.6 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 DUF1040 PF06288.8 gi|148642223|ref|YP_001272736.1| - 0.02 15.1 0.8 0.065 13.4 0.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1040) Cas_Cas1 PF01867.11 gi|148642224|ref|YP_001272737.1| - 3.8e-90 301.7 1.2 4.5e-90 301.5 0.8 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Cas_Cas4 PF01930.12 gi|148642225|ref|YP_001272738.1| - 2e-52 177.3 3.8 2.2e-52 177.2 2.6 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|148642225|ref|YP_001272738.1| - 7.6e-06 25.4 1.2 9.3e-06 25.1 0.4 1.4 1 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily DUF1284 PF06935.6 gi|148642225|ref|YP_001272738.1| - 0.056 13.6 1.1 0.14 12.3 0.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1284) Sporozoite_P67 PF05642.6 gi|148642225|ref|YP_001272738.1| - 1 7.1 4.1 1.2 6.9 2.9 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen DEAD PF00270.24 gi|148642226|ref|YP_001272739.1| - 7e-11 41.9 0.0 1.9e-09 37.2 0.0 3.0 3 1 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|148642226|ref|YP_001272739.1| - 0.00019 21.2 0.0 0.0013 18.5 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|148642226|ref|YP_001272739.1| - 0.00044 20.1 0.0 0.0018 18.1 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|148642226|ref|YP_001272739.1| - 0.0013 18.8 0.0 0.0049 17.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain Cas_Cas5d PF09704.5 gi|148642227|ref|YP_001272740.1| - 4.3e-05 23.2 0.2 0.0014 18.3 0.1 2.1 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.11 gi|148642228|ref|YP_001272741.1| - 1.6e-14 53.4 0.0 4.1e-13 48.7 0.0 2.5 1 1 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_CXXC_CXXC PF09706.5 gi|148642229|ref|YP_001272742.1| - 1.6e-20 72.9 3.2 9e-20 70.6 0.1 2.7 2 1 0 2 2 2 1 CRISPR-associated protein (Cas_CXXC_CXXC) ING PF12998.2 gi|148642229|ref|YP_001272742.1| - 0.5 10.6 3.9 1.9 8.8 0.7 2.4 2 0 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Cas_Cas6 PF01881.11 gi|148642230|ref|YP_001272743.1| - 1.1e-39 136.1 5.3 1.1e-39 136.1 3.7 1.9 2 0 0 2 2 2 1 CRISPR associated protein Cas6 DUF4399 PF14347.1 gi|148642231|ref|YP_001272744.1| - 1e-37 127.9 0.2 2.5e-11 43.4 0.0 4.9 4 1 1 5 5 5 4 Domain of unknown function (DUF4399) CarboxypepD_reg PF13620.1 gi|148642231|ref|YP_001272744.1| - 9.4e-13 48.0 13.0 0.0042 17.1 0.0 5.5 5 0 0 5 5 5 4 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|148642231|ref|YP_001272744.1| - 1.5e-12 47.3 13.3 0.0041 16.9 0.5 4.7 1 1 3 4 4 4 4 Bacterial Ig-like domain (group 1) fn3_3 PF14686.1 gi|148642231|ref|YP_001272744.1| - 0.01 15.9 2.3 0.11 12.6 0.0 3.6 2 1 0 3 3 3 1 Polysaccharide lyase family 4, domain II Wzt_C PF14524.1 gi|148642231|ref|YP_001272744.1| - 0.19 11.4 11.8 3.3 7.4 0.3 5.2 6 0 0 6 6 6 0 Wzt C-terminal domain Tim54 PF11711.3 gi|148642232|ref|YP_001272745.1| - 0.012 14.2 0.1 0.012 14.2 0.1 1.0 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 SdpI PF13630.1 gi|148642232|ref|YP_001272745.1| - 0.061 13.0 0.3 0.069 12.8 0.2 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family PIG-P PF08510.7 gi|148642232|ref|YP_001272745.1| - 0.063 12.9 0.2 0.063 12.9 0.1 1.0 1 0 0 1 1 1 0 PIG-P DUF11 PF01345.13 gi|148642233|ref|YP_001272746.1| - 1.9e-196 636.5 266.0 1.8e-14 53.4 2.2 21.7 20 1 1 21 21 21 19 Domain of unknown function DUF11 CARDB PF07705.6 gi|148642233|ref|YP_001272746.1| - 8.5e-38 128.4 203.2 0.001 19.0 1.9 21.1 16 4 3 20 20 20 17 CARDB DUF4139 PF13598.1 gi|148642233|ref|YP_001272746.1| - 1.5e-12 47.4 31.0 0.56 9.4 0.0 14.7 15 0 0 15 15 15 6 Domain of unknown function (DUF4139) Chlam_OMP6 PF03504.8 gi|148642233|ref|YP_001272746.1| - 5.7e-09 36.1 63.4 0.99 9.7 0.0 16.4 17 0 0 17 17 17 9 Chlamydia cysteine-rich outer membrane protein 6 NPCBM_assoc PF10633.4 gi|148642233|ref|YP_001272746.1| - 0.0014 18.6 71.3 7.2 6.7 0.0 19.7 18 3 0 18 18 18 3 NPCBM-associated, NEW3 domain of alpha-galactosidase Cys_Met_Meta_PP PF01053.15 gi|148642234|ref|YP_001272747.1| - 1.7e-138 461.1 0.0 1.9e-138 460.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|148642234|ref|YP_001272747.1| - 1.6e-10 40.6 0.0 3.7e-10 39.3 0.0 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|148642234|ref|YP_001272747.1| - 3.3e-09 36.1 0.0 5.5e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|148642234|ref|YP_001272747.1| - 9.1e-09 34.5 0.1 1.7e-08 33.6 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.11 gi|148642234|ref|YP_001272747.1| - 4e-05 22.4 0.0 6.3e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein SelA PF03841.8 gi|148642234|ref|YP_001272747.1| - 5.9e-05 21.9 0.1 0.00017 20.4 0.1 1.7 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase SLA_LP_auto_ag PF05889.8 gi|148642234|ref|YP_001272747.1| - 0.00051 18.6 0.0 0.00073 18.1 0.0 1.2 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Beta_elim_lyase PF01212.16 gi|148642234|ref|YP_001272747.1| - 0.0018 17.4 0.0 0.0044 16.1 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase CBS PF00571.23 gi|148642235|ref|YP_001272748.1| - 6.7e-29 99.4 0.6 4e-14 52.1 0.1 2.4 2 0 0 2 2 2 2 CBS domain Abhydrolase_1 PF00561.15 gi|148642235|ref|YP_001272748.1| - 4.7e-25 88.5 0.0 7e-25 87.9 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|148642235|ref|YP_001272748.1| - 5.1e-09 36.3 0.0 7.5e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF1460 PF07313.7 gi|148642235|ref|YP_001272748.1| - 0.0064 15.7 0.2 0.011 14.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1460) Peptidase_S9 PF00326.16 gi|148642235|ref|YP_001272748.1| - 0.011 14.9 0.1 0.029 13.5 0.0 1.7 2 0 0 2 2 2 0 Prolyl oligopeptidase family Esterase PF00756.15 gi|148642235|ref|YP_001272748.1| - 0.023 14.1 0.0 0.037 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Abhydrolase_5 PF12695.2 gi|148642235|ref|YP_001272748.1| - 0.074 12.8 0.1 0.6 9.8 0.1 2.1 1 1 0 1 1 1 0 Alpha/beta hydrolase family Ribonucleas_3_3 PF14622.1 gi|148642236|ref|YP_001272749.1| - 1e-30 106.3 0.0 1.6e-30 105.6 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.21 gi|148642236|ref|YP_001272749.1| - 2.6e-22 79.4 0.2 6.9e-22 78.0 0.1 1.7 1 1 0 1 1 1 1 Ribonuclease III domain dsrm PF00035.20 gi|148642236|ref|YP_001272749.1| - 1.3e-15 57.7 0.2 2.3e-15 56.9 0.1 1.4 1 0 0 1 1 1 1 Double-stranded RNA binding motif YaaC PF14175.1 gi|148642240|ref|YP_001272753.1| - 0.082 11.8 0.4 0.1 11.5 0.3 1.1 1 0 0 1 1 1 0 YaaC-like Protein Ribosomal_L37e PF01907.14 gi|148642241|ref|YP_001272754.1| - 4.4e-24 84.0 12.7 5e-24 83.8 8.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|148642241|ref|YP_001272754.1| - 0.003 17.3 1.3 0.0039 16.9 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon GCC2_GCC3 PF07699.8 gi|148642241|ref|YP_001272754.1| - 0.042 13.4 4.1 0.066 12.8 2.8 1.5 1 1 0 1 1 1 0 GCC2 and GCC3 FRG2 PF15315.1 gi|148642241|ref|YP_001272754.1| - 0.045 13.7 1.1 0.047 13.6 0.8 1.0 1 0 0 1 1 1 0 Facioscapulohumeral muscular dystrophy candidate 2 zf-ribbon_3 PF13248.1 gi|148642241|ref|YP_001272754.1| - 0.07 12.3 3.2 0.18 11.0 2.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Stc1 PF12898.2 gi|148642241|ref|YP_001272754.1| - 0.097 12.7 2.5 0.1 12.6 1.7 1.1 1 0 0 1 1 1 0 Stc1 domain HypA PF01155.14 gi|148642241|ref|YP_001272754.1| - 0.099 12.3 1.2 0.11 12.1 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|148642241|ref|YP_001272754.1| - 0.17 11.4 5.8 0.23 10.9 0.7 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_6 PF14599.1 gi|148642241|ref|YP_001272754.1| - 0.25 11.1 4.0 0.36 10.6 2.8 1.2 1 0 0 1 1 1 0 Zinc-ribbon NOB1_Zn_bind PF08772.6 gi|148642241|ref|YP_001272754.1| - 0.29 10.9 5.9 0.37 10.6 4.1 1.3 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|148642241|ref|YP_001272754.1| - 0.51 9.8 4.4 2.1 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|148642241|ref|YP_001272754.1| - 2.7 8.2 12.8 2.7 8.2 4.7 2.2 1 1 1 2 2 2 0 Ribosomal L32p protein family Zn_Tnp_IS1595 PF12760.2 gi|148642241|ref|YP_001272754.1| - 3.5 7.4 8.0 1.4e+02 2.3 5.5 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2_3 PF13878.1 gi|148642241|ref|YP_001272754.1| - 6.7 6.3 7.1 11 5.6 0.4 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO LSM PF01423.17 gi|148642242|ref|YP_001272755.1| - 5e-23 80.4 0.1 5.6e-23 80.2 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|148642242|ref|YP_001272755.1| - 0.0029 17.5 0.0 0.0036 17.2 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain PUA PF01472.15 gi|148642243|ref|YP_001272756.1| - 3.6e-21 74.6 0.5 6.1e-21 73.9 0.4 1.4 1 0 0 1 1 1 1 PUA domain FlbD PF06289.6 gi|148642243|ref|YP_001272756.1| - 0.032 13.5 0.4 0.21 10.9 0.0 2.4 2 0 0 2 2 2 0 Flagellar protein (FlbD) Creatininase PF02633.9 gi|148642244|ref|YP_001272757.1| - 1.7e-18 66.5 0.0 3.5e-18 65.5 0.0 1.5 1 1 0 1 1 1 1 Creatinine amidohydrolase DUF605 PF04652.11 gi|148642245|ref|YP_001272758.1| - 1.8 7.8 7.4 1.9 7.7 5.2 1.0 1 0 0 1 1 1 0 Vta1 like DUF4661 PF15576.1 gi|148642245|ref|YP_001272758.1| - 7.5 6.1 9.8 9.2 5.8 6.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4661) UPF0029 PF01205.14 gi|148642246|ref|YP_001272759.1| - 6.6e-39 131.9 0.0 1.1e-38 131.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|148642246|ref|YP_001272759.1| - 6.4e-06 25.6 0.0 1.7e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) KH_3 PF13014.1 gi|148642246|ref|YP_001272759.1| - 0.17 11.6 1.5 0.29 10.8 0.1 2.1 2 0 0 2 2 2 0 KH domain RRF PF01765.14 gi|148642246|ref|YP_001272759.1| - 0.96 8.8 8.3 1.4 8.4 2.0 2.9 2 1 1 3 3 3 0 Ribosome recycling factor DUF1947 PF09183.5 gi|148642246|ref|YP_001272759.1| - 1.9 8.2 7.4 15 5.4 0.3 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1947) SpoU_sub_bind PF08032.7 gi|148642246|ref|YP_001272759.1| - 7.4 6.8 8.7 0.93 9.7 0.9 3.0 3 1 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding Rubredoxin PF00301.15 gi|148642247|ref|YP_001272760.1| - 2.2e-14 53.0 9.4 1.4e-13 50.4 6.5 1.8 1 1 0 1 1 1 1 Rubredoxin A2L_zn_ribbon PF08792.5 gi|148642247|ref|YP_001272760.1| - 0.0078 15.6 2.0 0.7 9.4 0.3 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain zf-Sec23_Sec24 PF04810.10 gi|148642247|ref|YP_001272760.1| - 0.013 15.0 0.2 0.11 12.1 0.0 2.0 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger ADK_lid PF05191.9 gi|148642247|ref|YP_001272760.1| - 0.017 14.7 2.7 0.025 14.2 1.9 1.3 1 1 0 1 1 1 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.7 gi|148642247|ref|YP_001272760.1| - 0.02 14.2 7.3 0.048 12.9 0.7 2.1 1 1 2 3 3 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|148642247|ref|YP_001272760.1| - 0.024 13.8 1.1 1.6 8.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|148642247|ref|YP_001272760.1| - 0.03 13.4 2.9 0.11 11.6 0.2 2.0 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-H2C2_2 PF13465.1 gi|148642247|ref|YP_001272760.1| - 0.031 14.5 1.4 1.9 8.9 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain RNA_POL_M_15KD PF02150.11 gi|148642247|ref|YP_001272760.1| - 0.035 13.7 1.8 0.074 12.7 0.1 2.0 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|148642247|ref|YP_001272760.1| - 0.037 13.6 0.1 0.046 13.3 0.1 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_4 PF13894.1 gi|148642247|ref|YP_001272760.1| - 0.037 14.3 0.3 6.6 7.3 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|148642247|ref|YP_001272760.1| - 0.042 13.7 1.7 0.09 12.7 1.2 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|148642247|ref|YP_001272760.1| - 0.063 13.3 2.5 2.5 8.2 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-nanos PF05741.8 gi|148642247|ref|YP_001272760.1| - 0.083 12.8 0.4 12 6.0 0.1 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain HypA PF01155.14 gi|148642247|ref|YP_001272760.1| - 0.13 11.9 0.1 0.13 11.9 0.1 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Spt4 PF06093.8 gi|148642247|ref|YP_001272760.1| - 0.14 12.0 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-C2H2 PF00096.21 gi|148642247|ref|YP_001272760.1| - 0.19 12.1 3.5 1.9 8.9 0.4 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|148642247|ref|YP_001272760.1| - 0.22 11.2 4.2 5.8 6.7 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2H2_3 PF13878.1 gi|148642247|ref|YP_001272760.1| - 0.23 11.0 2.1 0.71 9.4 0.4 2.0 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Cys_rich_CPCC PF14206.1 gi|148642247|ref|YP_001272760.1| - 0.44 10.1 2.8 0.6 9.7 2.0 1.3 1 1 0 1 1 1 0 Cysteine-rich CPCC Nudix_N_2 PF14803.1 gi|148642247|ref|YP_001272760.1| - 1.6 8.4 5.2 3.6 7.3 0.5 2.2 2 0 0 2 2 2 0 Nudix N-terminal Rubredoxin PF00301.15 gi|148642248|ref|YP_001272761.1| - 5.8e-22 77.3 1.6 6.3e-22 77.1 1.1 1.0 1 0 0 1 1 1 1 Rubredoxin Elf1 PF05129.8 gi|148642248|ref|YP_001272761.1| - 0.002 17.7 0.5 0.032 13.9 0.0 2.0 1 1 1 2 2 2 1 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.2 gi|148642248|ref|YP_001272761.1| - 0.0033 17.1 1.1 0.16 11.8 0.0 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|148642248|ref|YP_001272761.1| - 0.0062 16.7 0.9 3.1 8.3 0.1 2.1 2 0 0 2 2 2 1 C2H2-type zinc finger zf-HIT PF04438.11 gi|148642248|ref|YP_001272761.1| - 0.009 15.6 0.7 2 8.1 0.0 2.1 2 0 0 2 2 2 1 HIT zinc finger Desulfoferrod_N PF06397.7 gi|148642248|ref|YP_001272761.1| - 0.013 14.8 1.2 0.5 9.8 0.2 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_2 PF13240.1 gi|148642248|ref|YP_001272761.1| - 0.014 14.9 1.7 0.38 10.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|148642248|ref|YP_001272761.1| - 0.021 14.4 2.3 0.081 12.5 0.1 2.0 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|148642248|ref|YP_001272761.1| - 0.025 13.7 5.8 0.37 10.0 4.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|148642248|ref|YP_001272761.1| - 0.025 13.6 3.5 0.23 10.6 0.6 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others TF_Zn_Ribbon PF08271.7 gi|148642248|ref|YP_001272761.1| - 0.048 12.9 2.2 2.2 7.6 0.1 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|148642248|ref|YP_001272761.1| - 0.054 13.1 2.2 0.94 9.1 1.5 2.1 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.1 gi|148642248|ref|YP_001272761.1| - 0.056 13.1 2.9 4.6 7.0 0.0 2.8 2 1 1 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|148642248|ref|YP_001272761.1| - 0.063 13.2 2.9 1.2 9.1 2.0 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|148642248|ref|YP_001272761.1| - 0.065 13.5 0.8 8.3 6.9 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_5 PF13719.1 gi|148642248|ref|YP_001272761.1| - 0.065 12.8 2.8 4.5 6.9 0.0 2.7 2 1 1 3 3 3 0 zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|148642248|ref|YP_001272761.1| - 0.07 12.7 0.3 2 8.0 0.1 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Mu-like_Com PF10122.4 gi|148642248|ref|YP_001272761.1| - 0.1 11.6 0.5 0.29 10.2 0.0 1.8 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-FPG_IleRS PF06827.9 gi|148642248|ref|YP_001272761.1| - 0.12 12.0 1.6 0.64 9.7 0.3 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF282 PF03380.9 gi|148642248|ref|YP_001272761.1| - 0.12 12.1 0.5 0.21 11.3 0.4 1.4 1 0 0 1 1 1 0 Caenorhabditis protein of unknown function, DUF282 zf-ISL3 PF14690.1 gi|148642248|ref|YP_001272761.1| - 0.12 12.4 1.1 3.8 7.6 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_POL_M_15KD PF02150.11 gi|148642248|ref|YP_001272761.1| - 0.19 11.4 3.7 0.2 11.3 0.1 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit RecR PF02132.10 gi|148642248|ref|YP_001272761.1| - 0.24 10.8 1.4 2.4 7.6 0.0 2.1 2 0 0 2 2 2 0 RecR protein DUF2296 PF10058.4 gi|148642248|ref|YP_001272761.1| - 0.25 11.1 1.0 7.6 6.3 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C2H2 PF00096.21 gi|148642248|ref|YP_001272761.1| - 0.39 11.1 2.2 19 5.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type PHD_2 PF13831.1 gi|148642248|ref|YP_001272761.1| - 0.46 9.8 2.5 10 5.5 0.0 2.2 2 0 0 2 2 2 0 PHD-finger zf-tcix PF14952.1 gi|148642248|ref|YP_001272761.1| - 0.72 9.2 4.3 4.9 6.5 1.2 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF1610 PF07754.6 gi|148642248|ref|YP_001272761.1| - 0.9 9.7 4.1 0.93 9.6 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) A2L_zn_ribbon PF08792.5 gi|148642248|ref|YP_001272761.1| - 0.96 8.9 4.5 1.7 8.1 0.6 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-Mss51 PF13824.1 gi|148642248|ref|YP_001272761.1| - 1.5 8.7 3.7 12 5.8 2.6 2.0 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 UPF0547 PF10571.4 gi|148642248|ref|YP_001272761.1| - 3.1 7.5 7.5 11 5.8 0.9 2.4 3 0 0 3 3 2 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|148642248|ref|YP_001272761.1| - 5.8 6.5 6.6 43 3.7 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Hexapep PF00132.19 gi|148642249|ref|YP_001272762.1| - 8.9e-28 94.5 47.4 6.4e-09 34.9 2.9 4.2 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|148642249|ref|YP_001272762.1| - 1.7e-12 46.6 21.6 1.4e-06 27.7 2.2 4.3 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase rpo30_N PF12410.3 gi|148642249|ref|YP_001272762.1| - 0.081 12.5 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Poxvirus DNA dependent RNA polymerase 30kDa subunit QueC PF06508.8 gi|148642250|ref|YP_001272763.1| - 0.0012 18.1 0.0 0.002 17.4 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|148642250|ref|YP_001272763.1| - 0.0015 17.4 0.1 0.0044 15.9 0.0 1.8 2 0 0 2 2 2 1 NAD synthase tRNA_Me_trans PF03054.11 gi|148642250|ref|YP_001272763.1| - 0.0029 16.2 0.1 0.0065 15.0 0.0 1.7 1 1 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|148642250|ref|YP_001272763.1| - 0.02 14.3 0.0 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase ATP_bind_3 PF01171.15 gi|148642250|ref|YP_001272763.1| - 0.07 12.6 0.0 0.18 11.3 0.0 1.6 1 1 0 1 1 1 0 PP-loop family KH_1 PF00013.24 gi|148642250|ref|YP_001272763.1| - 0.074 12.7 0.2 0.25 11.0 0.0 2.0 2 0 0 2 2 2 0 KH domain Apc9 PF12856.2 gi|148642250|ref|YP_001272763.1| - 0.4 10.7 2.8 0.67 10.0 1.3 1.8 2 0 0 2 2 2 0 Anaphase-promoting complex subunit 9 Zn_Tnp_IS1595 PF12760.2 gi|148642251|ref|YP_001272764.1| - 0.00024 20.8 3.0 0.0003 20.5 1.0 1.8 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|148642251|ref|YP_001272764.1| - 0.00026 20.8 0.7 0.00034 20.4 0.5 1.3 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.6 gi|148642251|ref|YP_001272764.1| - 0.00083 18.9 0.8 0.0016 18.0 0.4 1.5 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DUF2072 PF09845.4 gi|148642251|ref|YP_001272764.1| - 0.0036 17.2 0.2 0.0039 17.1 0.1 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) Lar_restr_allev PF14354.1 gi|148642251|ref|YP_001272764.1| - 0.033 14.4 0.6 0.052 13.8 0.4 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_L37ae PF01780.14 gi|148642251|ref|YP_001272764.1| - 0.051 13.4 0.2 0.058 13.2 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family Zn-ribbon_8 PF09723.5 gi|148642251|ref|YP_001272764.1| - 0.12 12.3 0.4 0.73 9.8 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|148642251|ref|YP_001272764.1| - 0.17 11.5 2.8 1.5 8.5 1.9 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|148642251|ref|YP_001272764.1| - 1.4 8.6 4.0 21 4.8 2.8 2.3 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Lyase_1 PF00206.15 gi|148642252|ref|YP_001272765.1| - 4.3e-62 210.0 0.1 6.8e-62 209.4 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|148642252|ref|YP_001272765.1| - 2.9e-16 59.2 0.0 1.1e-15 57.4 0.0 2.1 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Transpeptidase PF00905.17 gi|148642252|ref|YP_001272765.1| - 0.019 14.0 0.0 0.032 13.2 0.0 1.3 1 0 0 1 1 1 0 Penicillin binding protein transpeptidase domain TPR_12 PF13424.1 gi|148642252|ref|YP_001272765.1| - 0.12 12.3 0.1 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat Ribosomal_S27 PF01599.14 gi|148642253|ref|YP_001272766.1| - 3.7e-21 74.6 3.1 4.1e-21 74.5 2.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.1 gi|148642253|ref|YP_001272766.1| - 0.00075 19.1 1.2 0.21 11.3 0.0 2.2 2 0 0 2 2 2 2 Nudix N-terminal DZR PF12773.2 gi|148642253|ref|YP_001272766.1| - 0.014 15.1 0.7 0.02 14.7 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|148642253|ref|YP_001272766.1| - 0.028 14.2 4.2 0.055 13.2 3.0 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|148642253|ref|YP_001272766.1| - 0.034 13.9 0.7 0.042 13.6 0.5 1.2 1 0 0 1 1 1 0 Ribosomal protein L37e DUF2387 PF09526.5 gi|148642253|ref|YP_001272766.1| - 0.082 12.8 1.6 0.15 11.9 1.1 1.5 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|148642253|ref|YP_001272766.1| - 0.087 12.0 1.3 7.5 5.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain GCC2_GCC3 PF07699.8 gi|148642253|ref|YP_001272766.1| - 0.1 12.2 1.5 0.11 12.0 1.1 1.1 1 0 0 1 1 1 0 GCC2 and GCC3 OrfB_Zn_ribbon PF07282.6 gi|148642253|ref|YP_001272766.1| - 0.16 11.6 0.8 0.18 11.4 0.5 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain GFA PF04828.9 gi|148642253|ref|YP_001272766.1| - 0.19 11.6 1.2 6 6.8 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF1610 PF07754.6 gi|148642253|ref|YP_001272766.1| - 0.22 11.6 0.7 0.22 11.6 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TF_Zn_Ribbon PF08271.7 gi|148642253|ref|YP_001272766.1| - 0.29 10.4 3.0 0.52 9.6 2.1 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding DUF2082 PF09855.4 gi|148642253|ref|YP_001272766.1| - 0.54 10.1 3.2 0.88 9.4 0.3 2.2 2 1 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) A2L_zn_ribbon PF08792.5 gi|148642253|ref|YP_001272766.1| - 0.78 9.2 3.9 1.9 8.0 1.8 2.3 1 1 1 2 2 2 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|148642253|ref|YP_001272766.1| - 1.1 9.0 4.6 4.1 7.1 3.0 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.5 gi|148642253|ref|YP_001272766.1| - 1.8 8.5 6.8 11 6.0 0.6 2.2 1 1 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|148642253|ref|YP_001272766.1| - 4.2 6.9 6.0 15 5.2 0.8 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_S24e PF01282.14 gi|148642254|ref|YP_001272767.1| - 8.1e-22 76.8 2.3 9.7e-22 76.5 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e HycA_repressor PF11046.3 gi|148642254|ref|YP_001272767.1| - 0.018 15.0 0.1 0.021 14.7 0.1 1.0 1 0 0 1 1 1 0 Transcriptional repressor of hyc and hyp operons Sipho_tail PF05709.6 gi|148642254|ref|YP_001272767.1| - 0.03 13.4 0.1 0.039 13.0 0.1 1.1 1 0 0 1 1 1 0 Phage tail protein DUF359 PF04019.7 gi|148642255|ref|YP_001272768.1| - 1.9e-33 114.4 0.0 3e-33 113.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.8 gi|148642256|ref|YP_001272769.1| - 9.8e-12 44.5 1.1 1.6e-11 43.8 0.8 1.4 1 1 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.10 gi|148642256|ref|YP_001272769.1| - 0.0011 18.3 2.4 0.0018 17.6 1.7 1.4 1 0 0 1 1 1 1 RecR protein DUF3797 PF12677.2 gi|148642256|ref|YP_001272769.1| - 0.022 14.3 1.6 0.046 13.3 1.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) PolC_DP2 PF03833.8 gi|148642256|ref|YP_001272769.1| - 0.026 12.1 0.4 0.023 12.3 0.3 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Nop10p PF04135.7 gi|148642256|ref|YP_001272769.1| - 0.036 13.8 1.0 0.05 13.3 0.7 1.2 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family NRDD PF13597.1 gi|148642256|ref|YP_001272769.1| - 0.056 11.5 0.7 0.063 11.3 0.5 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-C3HC4_3 PF13920.1 gi|148642256|ref|YP_001272769.1| - 0.06 13.0 2.4 0.087 12.5 1.6 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) NOB1_Zn_bind PF08772.6 gi|148642256|ref|YP_001272769.1| - 0.061 13.1 0.1 0.061 13.1 0.1 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.2 gi|148642256|ref|YP_001272769.1| - 0.11 12.3 1.4 0.2 11.4 0.9 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|148642256|ref|YP_001272769.1| - 0.13 11.9 0.3 0.13 11.9 0.2 2.1 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Nudix_N_2 PF14803.1 gi|148642256|ref|YP_001272769.1| - 0.47 10.1 2.9 5.1 6.8 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-HIT PF04438.11 gi|148642256|ref|YP_001272769.1| - 0.73 9.5 5.4 0.71 9.5 3.8 1.3 1 1 0 1 1 1 0 HIT zinc finger RNA_POL_M_15KD PF02150.11 gi|148642256|ref|YP_001272769.1| - 1.2 8.8 3.9 6.2 6.5 0.1 2.5 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-H2C2_5 PF13909.1 gi|148642256|ref|YP_001272769.1| - 1.3 9.4 0.2 1.3 9.4 0.2 2.1 1 1 1 2 2 2 0 C2H2-type zinc-finger domain Rad50_zn_hook PF04423.9 gi|148642256|ref|YP_001272769.1| - 1.6 8.2 7.5 0.66 9.4 2.2 2.1 2 1 0 2 2 2 0 Rad50 zinc hook motif Rubredoxin PF00301.15 gi|148642256|ref|YP_001272769.1| - 2.5 8.0 6.9 6.3 6.7 0.3 2.3 1 1 1 2 2 2 0 Rubredoxin SHS2_Rpb7-N PF03876.12 gi|148642257|ref|YP_001272770.1| - 7.5e-18 64.4 0.0 1.6e-17 63.3 0.0 1.6 2 0 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|148642257|ref|YP_001272770.1| - 7.1e-12 45.2 0.2 1.2e-11 44.5 0.2 1.3 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|148642257|ref|YP_001272770.1| - 0.008 16.3 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 Pyrophosphatase PF00719.14 gi|148642258|ref|YP_001272771.1| - 7.9e-48 161.8 0.0 8.8e-48 161.6 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase DUF1514 PF07438.6 gi|148642258|ref|YP_001272771.1| - 0.087 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1514) Fcf1 PF04900.7 gi|148642259|ref|YP_001272772.1| - 2.5e-08 33.9 0.0 3.8e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|148642259|ref|YP_001272772.1| - 3.9e-06 27.0 2.2 0.001 19.1 1.5 2.1 1 1 0 1 1 1 1 PIN domain PIN PF01850.16 gi|148642259|ref|YP_001272772.1| - 0.00083 19.6 0.4 0.00092 19.5 0.3 1.1 1 0 0 1 1 1 1 PIN domain Chordopox_G3 PF06129.7 gi|148642259|ref|YP_001272772.1| - 0.12 12.5 0.3 0.2 11.8 0.2 1.4 1 0 0 1 1 1 0 Chordopoxvirus G3 protein GTP_EFTU PF00009.22 gi|148642260|ref|YP_001272773.1| - 1.6e-43 148.3 0.2 2.9e-43 147.4 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|148642260|ref|YP_001272773.1| - 5.7e-31 106.4 0.1 1.4e-30 105.1 0.0 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|148642260|ref|YP_001272773.1| - 6.2e-08 32.6 0.9 6.2e-08 32.6 0.6 1.9 2 0 0 2 2 2 1 Elongation factor Tu domain 2 PolC_DP2 PF03833.8 gi|148642260|ref|YP_001272773.1| - 0.00023 18.9 1.0 0.00034 18.4 0.7 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 PduV-EutP PF10662.4 gi|148642260|ref|YP_001272773.1| - 0.00085 18.8 4.2 0.16 11.4 0.0 3.5 4 0 0 4 4 4 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|148642260|ref|YP_001272773.1| - 0.0015 18.4 0.0 0.0036 17.2 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase DLIC PF05783.6 gi|148642260|ref|YP_001272773.1| - 0.025 13.2 0.0 4.2 5.9 0.0 2.3 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) Dynamin_N PF00350.18 gi|148642260|ref|YP_001272773.1| - 0.077 12.8 0.1 4.5 7.0 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Opy2 PF09463.5 gi|148642260|ref|YP_001272773.1| - 0.08 13.0 6.6 0.2 11.7 4.6 1.6 1 0 0 1 1 1 0 Opy2 protein PhnA_Zn_Ribbon PF08274.7 gi|148642260|ref|YP_001272773.1| - 0.11 12.3 2.5 0.25 11.1 0.0 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Nop10p PF04135.7 gi|148642260|ref|YP_001272773.1| - 0.12 12.1 1.7 0.27 10.9 1.2 1.6 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family OrfB_Zn_ribbon PF07282.6 gi|148642260|ref|YP_001272773.1| - 3.7 7.2 6.4 0.8 9.3 1.8 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|148642260|ref|YP_001272773.1| - 9.9 5.5 13.0 0.62 9.3 4.4 2.3 3 0 0 3 3 3 0 zinc-ribbon domain Ribosomal_S6e PF01092.14 gi|148642261|ref|YP_001272774.1| - 3.3e-32 110.8 2.6 3.7e-32 110.6 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.22 gi|148642262|ref|YP_001272775.1| - 6.9e-34 116.9 0.0 1.9e-33 115.5 0.0 1.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|148642262|ref|YP_001272775.1| - 4.8e-19 68.2 2.9 1.6e-18 66.5 1.6 2.2 3 0 0 3 3 3 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|148642262|ref|YP_001272775.1| - 1.4e-11 44.3 3.4 1.1e-08 35.0 0.0 3.3 3 1 1 4 4 4 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|148642262|ref|YP_001272775.1| - 2.1e-11 43.3 0.5 5.5e-11 41.9 0.2 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|148642262|ref|YP_001272775.1| - 7.3e-06 25.9 0.0 2.1e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|148642262|ref|YP_001272775.1| - 0.00064 20.2 0.0 0.0019 18.7 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|148642262|ref|YP_001272775.1| - 0.0023 17.5 0.0 0.0054 16.2 0.0 1.7 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|148642262|ref|YP_001272775.1| - 0.01 15.6 0.1 0.28 10.9 0.0 2.7 1 1 1 2 2 2 0 Dynamin family PduV-EutP PF10662.4 gi|148642262|ref|YP_001272775.1| - 0.043 13.3 0.1 0.91 9.0 0.0 2.6 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation MerR_2 PF13591.1 gi|148642262|ref|YP_001272775.1| - 0.083 12.4 0.2 0.25 10.9 0.1 1.8 2 0 0 2 2 2 0 MerR HTH family regulatory protein NDK PF00334.14 gi|148642263|ref|YP_001272776.1| - 1.3e-56 190.1 0.0 1.4e-56 189.9 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GatB_N PF02934.10 gi|148642263|ref|YP_001272776.1| - 0.054 12.3 0.0 0.076 11.8 0.0 1.3 1 0 0 1 1 1 0 GatB/GatE catalytic domain Ribosomal_L24e PF01246.15 gi|148642264|ref|YP_001272777.1| - 7.3e-19 67.4 1.7 7.7e-19 67.3 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|148642264|ref|YP_001272777.1| - 1.2e-05 24.8 4.4 1.6e-05 24.4 3.1 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|148642264|ref|YP_001272777.1| - 0.0041 17.2 1.7 0.0077 16.3 1.1 1.5 1 1 0 1 1 1 1 Archaeal TRASH domain YHS PF04945.8 gi|148642264|ref|YP_001272777.1| - 0.0049 16.6 2.4 0.0057 16.4 1.6 1.1 1 0 0 1 1 1 1 YHS domain DUF581 PF04570.9 gi|148642264|ref|YP_001272777.1| - 0.0062 15.8 4.1 0.012 14.9 2.8 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF581) DUF2175 PF09943.4 gi|148642264|ref|YP_001272777.1| - 0.014 15.4 0.9 0.016 15.2 0.6 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) DUF4652 PF15525.1 gi|148642264|ref|YP_001272777.1| - 0.073 12.4 0.1 0.082 12.3 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4652) LolA PF03548.10 gi|148642264|ref|YP_001272777.1| - 0.098 12.2 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Outer membrane lipoprotein carrier protein LolA Ecl1 PF12855.2 gi|148642264|ref|YP_001272777.1| - 0.13 11.6 1.2 0.18 11.1 0.8 1.2 1 0 0 1 1 1 0 Life-span regulatory factor LIM PF00412.17 gi|148642264|ref|YP_001272777.1| - 0.21 11.6 2.6 0.68 10.0 1.9 1.7 1 1 0 1 1 1 0 LIM domain zf-C4_ClpX PF06689.8 gi|148642264|ref|YP_001272777.1| - 0.3 10.6 5.0 0.47 10.0 3.5 1.6 1 1 0 1 1 1 0 ClpX C4-type zinc finger Gin PF10764.4 gi|148642264|ref|YP_001272777.1| - 0.34 10.6 5.8 3.5 7.4 4.0 2.1 1 1 0 1 1 1 0 Inhibitor of sigma-G Gin DUF329 PF03884.9 gi|148642264|ref|YP_001272777.1| - 0.62 9.6 4.3 3 7.4 3.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF329) Ribosomal_S28e PF01200.13 gi|148642265|ref|YP_001272778.1| - 2.1e-30 104.2 1.7 2.3e-30 104.1 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|148642266|ref|YP_001272779.1| - 4.7e-26 90.1 0.1 6.3e-26 89.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNase_P_pop3 PF08228.6 gi|148642266|ref|YP_001272779.1| - 0.00024 20.9 0.0 0.00027 20.7 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 ATP-synt_F PF01990.12 gi|148642266|ref|YP_001272779.1| - 0.066 13.5 0.3 0.14 12.5 0.2 1.7 1 1 0 1 1 1 0 ATP synthase (F/14-kDa) subunit DUF1269 PF06897.7 gi|148642266|ref|YP_001272779.1| - 0.23 11.4 1.6 0.9 9.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) DUF134 PF02001.11 gi|148642267|ref|YP_001272780.1| - 1.1e-24 86.2 0.0 2.1e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF134 DZR PF12773.2 gi|148642267|ref|YP_001272780.1| - 0.00054 19.7 16.9 0.19 11.5 4.1 2.8 1 1 1 2 2 2 2 Double zinc ribbon HypA PF01155.14 gi|148642267|ref|YP_001272780.1| - 0.0024 17.5 0.6 0.0024 17.5 0.4 2.9 2 1 1 3 3 3 1 Hydrogenase expression/synthesis hypA family HTH_10 PF04967.7 gi|148642267|ref|YP_001272780.1| - 0.0046 16.5 0.0 0.0076 15.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Zn-ribbon_8 PF09723.5 gi|148642267|ref|YP_001272780.1| - 0.005 16.7 20.6 0.45 10.5 2.3 3.9 3 1 0 3 3 3 2 Zinc ribbon domain HTH_37 PF13744.1 gi|148642267|ref|YP_001272780.1| - 0.0085 15.8 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|148642267|ref|YP_001272780.1| - 0.014 14.6 16.2 5.4 6.4 4.8 3.9 3 1 0 3 3 3 0 TFIIB zinc-binding Sigma70_ECF PF07638.6 gi|148642267|ref|YP_001272780.1| - 0.034 13.8 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor Sigma70_r4 PF04545.11 gi|148642267|ref|YP_001272780.1| - 0.042 13.1 0.0 0.083 12.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 PhnA_Zn_Ribbon PF08274.7 gi|148642267|ref|YP_001272780.1| - 0.048 13.4 18.0 0.18 11.6 0.1 4.2 3 1 0 3 3 3 0 PhnA Zinc-Ribbon HTH_26 PF13443.1 gi|148642267|ref|YP_001272780.1| - 0.067 13.4 0.3 0.26 11.5 0.0 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain OrfB_Zn_ribbon PF07282.6 gi|148642267|ref|YP_001272780.1| - 0.081 12.5 14.0 1.2 8.8 3.4 3.1 1 1 2 3 3 3 0 Putative transposase DNA-binding domain Sigma70_r4_2 PF08281.7 gi|148642267|ref|YP_001272780.1| - 0.1 12.0 0.0 0.28 10.6 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 zinc_ribbon_2 PF13240.1 gi|148642267|ref|YP_001272780.1| - 0.12 11.9 16.7 0.78 9.3 0.1 4.1 3 1 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|148642267|ref|YP_001272780.1| - 0.21 11.1 16.7 0.096 12.1 7.5 2.7 2 1 1 3 3 3 0 Transposase zinc-binding domain DnaJ_CXXCXGXG PF00684.14 gi|148642267|ref|YP_001272780.1| - 0.89 9.6 12.6 2.5 8.1 8.8 1.8 1 1 0 1 1 1 0 DnaJ central domain Lar_restr_allev PF14354.1 gi|148642267|ref|YP_001272780.1| - 1.5 9.1 13.2 2.3 8.5 1.8 3.3 2 1 1 3 3 3 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|148642267|ref|YP_001272780.1| - 1.6 8.4 20.2 3.4 7.4 0.4 4.2 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|148642267|ref|YP_001272780.1| - 1.7 7.9 18.7 0.27 10.4 6.1 3.8 3 1 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|148642267|ref|YP_001272780.1| - 1.8 8.4 18.2 13 5.6 1.3 4.3 2 1 2 4 4 4 0 Transposase zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|148642267|ref|YP_001272780.1| - 3.2 7.6 12.0 9.5 6.0 0.1 4.0 4 0 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ISL3 PF14690.1 gi|148642267|ref|YP_001272780.1| - 3.5 7.7 13.8 23 5.0 0.4 4.2 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A2L_zn_ribbon PF08792.5 gi|148642267|ref|YP_001272780.1| - 3.7 7.1 15.9 2.1 7.8 0.5 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain ADK_lid PF05191.9 gi|148642267|ref|YP_001272780.1| - 3.9 7.2 17.6 3.5 7.3 4.2 3.4 2 2 0 2 2 2 0 Adenylate kinase, active site lid DNA_ligase_ZBD PF03119.11 gi|148642267|ref|YP_001272780.1| - 4.7 6.9 12.0 2.7 7.7 0.6 3.3 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Opy2 PF09463.5 gi|148642267|ref|YP_001272780.1| - 7.9 6.6 14.4 15 5.7 0.2 3.5 3 0 0 3 3 3 0 Opy2 protein zf-IS66 PF13005.2 gi|148642267|ref|YP_001272780.1| - 9.9 6.2 15.9 2.3 8.2 0.1 4.4 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|148642268|ref|YP_001272781.1| - 0.00065 18.9 3.3 0.31 10.3 0.2 3.0 3 0 0 3 3 3 2 TFIIB zinc-binding HypA PF01155.14 gi|148642268|ref|YP_001272781.1| - 0.0016 18.0 0.1 0.0024 17.5 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family PhnA_Zn_Ribbon PF08274.7 gi|148642268|ref|YP_001272781.1| - 0.0069 16.1 4.2 0.56 10.0 0.4 2.5 2 0 0 2 2 2 2 PhnA Zinc-Ribbon DZR PF12773.2 gi|148642268|ref|YP_001272781.1| - 0.017 14.9 0.3 0.017 14.9 0.2 2.5 2 1 0 2 2 2 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|148642268|ref|YP_001272781.1| - 0.017 14.8 1.9 0.021 14.4 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|148642268|ref|YP_001272781.1| - 0.021 14.7 2.2 0.021 14.7 1.5 2.4 2 1 0 2 2 2 0 Zinc ribbon domain NRDD PF13597.1 gi|148642268|ref|YP_001272781.1| - 0.23 9.5 1.3 0.29 9.1 0.9 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn_Tnp_IS1595 PF12760.2 gi|148642268|ref|YP_001272781.1| - 0.5 10.2 0.1 0.5 10.2 0.1 2.9 4 0 0 4 4 4 0 Transposase zinc-ribbon domain DUF1610 PF07754.6 gi|148642268|ref|YP_001272781.1| - 0.6 10.2 7.6 6.7 6.9 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) TFIIS_C PF01096.13 gi|148642268|ref|YP_001272781.1| - 3.6 7.3 14.4 0.61 9.7 0.3 3.1 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) Fer4 PF00037.22 gi|148642269|ref|YP_001272782.1| - 1.1e-10 40.5 21.8 1.4e-05 24.4 4.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642269|ref|YP_001272782.1| - 1.7e-08 34.7 13.8 3.3e-08 33.7 9.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642269|ref|YP_001272782.1| - 3.6e-08 33.5 15.2 5.8e-08 32.8 10.5 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642269|ref|YP_001272782.1| - 2.5e-07 30.3 14.8 2.5e-07 30.3 10.2 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148642269|ref|YP_001272782.1| - 9.5e-07 28.4 19.1 2e-05 24.2 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148642269|ref|YP_001272782.1| - 1.1e-06 29.2 14.0 9.7e-05 23.0 0.6 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|148642269|ref|YP_001272782.1| - 4.9e-06 26.1 14.9 0.00079 19.2 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|148642269|ref|YP_001272782.1| - 7.9e-06 25.6 17.0 1.3e-05 24.9 11.8 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148642269|ref|YP_001272782.1| - 3.8e-05 23.6 19.9 0.0014 18.8 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|148642269|ref|YP_001272782.1| - 0.00028 20.8 15.7 0.0073 16.3 11.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642269|ref|YP_001272782.1| - 0.0024 18.1 16.0 0.058 13.7 2.2 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|148642269|ref|YP_001272782.1| - 0.0032 17.8 19.0 0.027 15.0 3.9 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148642269|ref|YP_001272782.1| - 0.005 17.2 14.2 0.016 15.6 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|148642269|ref|YP_001272782.1| - 0.0071 16.8 18.6 0.32 11.6 12.9 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|148642269|ref|YP_001272782.1| - 0.0086 15.9 7.7 0.012 15.4 5.4 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|148642269|ref|YP_001272782.1| - 0.2 12.0 20.1 29 5.1 13.9 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain DUF1272 PF06906.6 gi|148642269|ref|YP_001272782.1| - 2.4 8.0 10.8 4.6 7.1 2.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) P12 PF12669.2 gi|148642269|ref|YP_001272782.1| - 5.2 7.3 9.2 5.2 7.3 0.2 2.1 2 0 0 2 2 2 0 Virus attachment protein p12 family DUF2204 PF09970.4 gi|148642270|ref|YP_001272783.1| - 0.02 14.3 0.2 0.02 14.3 0.1 1.0 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) CCDC-167 PF15188.1 gi|148642270|ref|YP_001272783.1| - 0.11 12.4 0.1 0.13 12.2 0.1 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 DUF4234 PF14018.1 gi|148642271|ref|YP_001272784.1| - 6.2e-06 25.8 1.2 7.6e-06 25.5 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4234) TraD_N PF12615.3 gi|148642271|ref|YP_001272784.1| - 0.023 15.0 0.1 0.028 14.7 0.1 1.1 1 0 0 1 1 1 0 F sex factor protein N terminal DUF2474 PF10617.4 gi|148642271|ref|YP_001272784.1| - 0.03 13.8 0.7 0.04 13.5 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2474) Pox_A28 PF04584.9 gi|148642271|ref|YP_001272784.1| - 0.05 13.4 0.3 0.05 13.4 0.2 1.0 1 0 0 1 1 1 0 Poxvirus A28 family RIC3 PF15361.1 gi|148642271|ref|YP_001272784.1| - 0.12 12.6 0.2 0.12 12.5 0.2 1.0 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 DUF1887 PF09002.6 gi|148642272|ref|YP_001272785.1| - 0.00014 20.3 0.1 0.00034 19.1 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1887) NERD PF08378.6 gi|148642272|ref|YP_001272785.1| - 0.042 14.1 0.2 0.11 12.7 0.1 1.8 1 0 0 1 1 1 0 Nuclease-related domain CBFD_NFYB_HMF PF00808.18 gi|148642273|ref|YP_001272786.1| - 1.3e-21 76.3 0.2 1.4e-21 76.2 0.2 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|148642273|ref|YP_001272786.1| - 5.1e-12 45.7 0.0 5.8e-12 45.5 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|148642273|ref|YP_001272786.1| - 2.8e-07 30.6 0.0 3.1e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TAF PF02969.12 gi|148642273|ref|YP_001272786.1| - 2.6e-06 27.2 0.1 2.7e-06 27.2 0.0 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.10 gi|148642273|ref|YP_001272786.1| - 5.8e-05 22.8 0.0 6.6e-05 22.7 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-T PF15511.1 gi|148642273|ref|YP_001272786.1| - 0.012 14.9 0.2 0.016 14.4 0.1 1.2 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Bromo_TP PF07524.8 gi|148642273|ref|YP_001272786.1| - 0.012 15.3 0.0 0.014 15.1 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated TFIID_20kDa PF03847.8 gi|148642273|ref|YP_001272786.1| - 0.021 15.1 0.0 0.023 14.9 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.11 gi|148642273|ref|YP_001272786.1| - 0.045 13.5 0.0 0.048 13.4 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit PALP PF00291.20 gi|148642274|ref|YP_001272787.1| - 8e-70 235.4 0.6 9.3e-70 235.2 0.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zinc_ribbon_2 PF13240.1 gi|148642274|ref|YP_001272787.1| - 0.068 12.6 2.8 0.081 12.4 0.7 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148642274|ref|YP_001272787.1| - 0.14 11.5 7.6 0.045 13.0 2.4 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding C1_2 PF03107.11 gi|148642274|ref|YP_001272787.1| - 0.31 11.2 2.3 0.75 9.9 1.6 1.6 1 0 0 1 1 1 0 C1 domain Prok-RING_1 PF14446.1 gi|148642274|ref|YP_001272787.1| - 3.8 7.3 6.9 0.47 10.2 0.8 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF95 PF01944.12 gi|148642275|ref|YP_001272788.1| - 6.8e-38 130.0 13.3 8.3e-38 129.7 9.2 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF1923 PF09083.5 gi|148642275|ref|YP_001272788.1| - 0.014 14.8 0.5 0.024 14.0 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1923) OppC_N PF12911.2 gi|148642275|ref|YP_001272788.1| - 2.7 7.4 0.0 2.7 7.4 0.0 2.9 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C tRNA-synt_1b PF00579.20 gi|148642276|ref|YP_001272789.1| - 9.4e-49 166.0 0.1 1.1e-48 165.8 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|148642276|ref|YP_001272789.1| - 0.049 12.3 0.0 1.2 7.7 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA_int_endo PF01974.12 gi|148642277|ref|YP_001272790.1| - 1e-29 102.1 0.5 1.5e-29 101.6 0.3 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|148642277|ref|YP_001272790.1| - 3.7e-18 64.8 1.0 4.6e-18 64.5 0.1 1.6 2 0 0 2 2 2 1 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.5 gi|148642277|ref|YP_001272790.1| - 0.064 13.4 0.3 0.11 12.6 0.2 1.4 1 0 0 1 1 1 0 Sen15 protein tRNA_int_end_N2 PF12928.2 gi|148642277|ref|YP_001272790.1| - 0.098 12.1 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 tRNA-splicing endonuclease subunit sen54 N-term Fe_dep_repr_C PF02742.10 gi|148642278|ref|YP_001272791.1| - 3.1e-26 90.8 0.6 6.2e-26 89.8 0.4 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|148642278|ref|YP_001272791.1| - 1.1e-18 66.9 0.7 2.3e-18 65.9 0.3 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|148642278|ref|YP_001272791.1| - 2e-08 34.0 0.0 3.1e-07 30.2 0.0 2.2 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.2 gi|148642278|ref|YP_001272791.1| - 3e-06 26.7 0.0 6e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|148642278|ref|YP_001272791.1| - 1.4e-05 24.3 0.1 3.8e-05 22.9 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|148642278|ref|YP_001272791.1| - 1.5e-05 24.5 0.0 4e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|148642278|ref|YP_001272791.1| - 0.0031 17.3 0.0 0.0099 15.7 0.0 1.9 1 1 1 2 2 2 1 B-block binding subunit of TFIIIC HTH_5 PF01022.15 gi|148642278|ref|YP_001272791.1| - 0.004 16.7 0.0 0.011 15.4 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|148642278|ref|YP_001272791.1| - 0.0091 15.7 0.8 0.021 14.6 0.6 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|148642278|ref|YP_001272791.1| - 0.019 14.7 0.0 0.045 13.5 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Ribosomal_S19e PF01090.14 gi|148642278|ref|YP_001272791.1| - 0.02 14.3 0.0 0.031 13.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_IclR PF09339.5 gi|148642278|ref|YP_001272791.1| - 0.023 14.2 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|148642278|ref|YP_001272791.1| - 0.026 14.8 0.0 0.063 13.6 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|148642278|ref|YP_001272791.1| - 0.028 13.9 0.0 0.077 12.5 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.15 gi|148642278|ref|YP_001272791.1| - 0.038 14.1 0.1 0.13 12.4 0.0 1.9 1 1 0 1 1 1 0 Transcriptional regulator FeoC PF09012.5 gi|148642278|ref|YP_001272791.1| - 0.044 13.4 0.0 0.15 11.7 0.0 1.9 1 1 0 1 1 1 0 FeoC like transcriptional regulator TrmB PF01978.14 gi|148642278|ref|YP_001272791.1| - 0.069 12.8 0.1 0.14 11.8 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|148642278|ref|YP_001272791.1| - 0.08 12.9 0.1 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|148642278|ref|YP_001272791.1| - 0.089 12.4 0.0 0.25 11.0 0.0 1.8 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.2 gi|148642278|ref|YP_001272791.1| - 0.11 12.2 0.0 0.33 10.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|148642278|ref|YP_001272791.1| - 0.12 12.0 0.0 0.61 9.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF4399 PF14347.1 gi|148642279|ref|YP_001272792.1| - 3e-34 116.9 5.9 1.6e-08 34.4 0.0 7.6 7 1 0 7 7 7 6 Domain of unknown function (DUF4399) PMBR PF09373.5 gi|148642279|ref|YP_001272792.1| - 2.2e-25 87.3 11.5 8.2e-06 25.5 0.2 7.3 7 0 0 7 7 7 4 Pseudomurein-binding repeat Transglut_core PF01841.14 gi|148642279|ref|YP_001272792.1| - 2.8e-21 75.8 1.0 1.1e-20 73.9 0.0 2.3 2 0 0 2 2 2 1 Transglutaminase-like superfamily Big_1 PF02369.11 gi|148642279|ref|YP_001272792.1| - 1.5e-20 72.9 49.0 7.2e-05 22.6 1.1 8.2 7 1 0 8 8 7 7 Bacterial Ig-like domain (group 1) DUF4015 PF13200.1 gi|148642279|ref|YP_001272792.1| - 2.1e-08 33.4 0.0 4.4e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain Peptidase_C71 PF12386.3 gi|148642279|ref|YP_001272792.1| - 0.00018 20.9 0.5 0.00047 19.6 0.3 1.7 1 0 0 1 1 1 1 Pseudomurein endo-isopeptidase Pei YtkA PF13115.1 gi|148642279|ref|YP_001272792.1| - 0.033 14.5 1.9 2.1 8.7 0.1 4.2 4 0 0 4 4 4 0 YtkA-like Lsr2 PF11774.3 gi|148642279|ref|YP_001272792.1| - 0.039 13.8 5.3 52 3.8 0.0 5.9 7 0 0 7 7 7 0 Lsr2 Glyco_hydro_42 PF02449.10 gi|148642279|ref|YP_001272792.1| - 0.12 11.4 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 Beta-galactosidase IBR PF01485.16 gi|148642279|ref|YP_001272792.1| - 0.15 11.9 0.9 0.29 11.0 0.6 1.4 1 0 0 1 1 1 0 IBR domain Big_3_4 PF13754.1 gi|148642279|ref|YP_001272792.1| - 4.7 7.6 37.9 0.29 11.4 5.5 6.7 6 0 0 6 6 6 0 Bacterial Ig-like domain (group 3) Cpn60_TCP1 PF00118.19 gi|148642280|ref|YP_001272793.1| - 1.5e-160 534.9 16.7 1.7e-160 534.8 11.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF4399 PF14347.1 gi|148642281|ref|YP_001272794.1| - 9.3e-22 76.8 1.5 6.1e-09 35.7 0.0 3.3 2 1 1 3 3 3 3 Domain of unknown function (DUF4399) Big_1 PF02369.11 gi|148642281|ref|YP_001272794.1| - 2.1e-09 37.1 13.0 0.016 15.0 0.0 3.6 3 1 0 3 3 3 3 Bacterial Ig-like domain (group 1) Lsr2 PF11774.3 gi|148642281|ref|YP_001272794.1| - 0.003 17.4 0.1 0.84 9.5 0.0 3.1 3 0 0 3 3 3 1 Lsr2 DUF4458 PF14660.1 gi|148642281|ref|YP_001272794.1| - 0.015 15.2 7.6 1.3 9.0 0.4 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4458) Cna_B PF05738.8 gi|148642281|ref|YP_001272794.1| - 0.14 11.9 17.7 0.36 10.6 2.1 3.7 3 1 0 3 3 3 0 Cna protein B-type domain NT-C2 PF10358.4 gi|148642281|ref|YP_001272794.1| - 0.15 11.5 5.1 3 7.3 0.4 2.6 3 0 0 3 3 3 0 N-terminal C2 in EEIG1 and EHBP1 proteins Big_3_4 PF13754.1 gi|148642281|ref|YP_001272794.1| - 1 9.7 5.0 1 9.7 0.1 3.3 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 3) Lactamase_B PF00753.22 gi|148642282|ref|YP_001272795.1| - 4.9e-24 85.0 0.0 7.3e-24 84.5 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|148642282|ref|YP_001272795.1| - 4.4e-11 42.9 0.1 2e-10 40.8 0.0 2.0 2 0 0 2 2 2 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|148642282|ref|YP_001272795.1| - 0.0065 16.0 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_5 PF12724.2 gi|148642282|ref|YP_001272795.1| - 0.087 12.8 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin domain DUF1482 PF07358.6 gi|148642282|ref|YP_001272795.1| - 0.094 12.3 0.1 3.4 7.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1482) HypA PF01155.14 gi|148642283|ref|YP_001272796.1| - 0.00029 20.4 1.8 0.00029 20.4 1.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|148642283|ref|YP_001272796.1| - 0.0015 18.4 4.1 0.022 14.7 2.9 2.2 1 1 0 1 1 1 1 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|148642283|ref|YP_001272796.1| - 0.0089 15.7 0.9 0.0089 15.7 0.6 1.5 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|148642283|ref|YP_001272796.1| - 0.0098 15.8 1.0 0.7 9.9 0.2 2.2 2 0 0 2 2 2 1 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|148642283|ref|YP_001272796.1| - 0.011 15.5 2.6 2.3 8.0 0.3 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|148642283|ref|YP_001272796.1| - 0.012 15.2 5.9 0.11 12.0 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2296 PF10058.4 gi|148642283|ref|YP_001272796.1| - 0.032 13.9 0.8 3.8 7.3 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Zn_Tnp_IS1 PF03811.8 gi|148642283|ref|YP_001272796.1| - 0.033 13.6 8.2 0.42 10.1 1.4 2.4 2 0 0 2 2 2 0 InsA N-terminal domain zf-UBR PF02207.15 gi|148642283|ref|YP_001272796.1| - 0.037 13.7 1.0 0.047 13.4 0.7 1.2 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) DZR PF12773.2 gi|148642283|ref|YP_001272796.1| - 0.039 13.7 2.3 0.053 13.3 1.6 1.5 1 1 0 1 1 1 0 Double zinc ribbon RE_MamI PF09567.5 gi|148642283|ref|YP_001272796.1| - 0.04 12.9 0.5 0.04 12.9 0.3 1.0 1 0 0 1 1 1 0 MamI restriction endonuclease zf-ribbon_3 PF13248.1 gi|148642283|ref|YP_001272796.1| - 0.058 12.6 0.8 1.2 8.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|148642283|ref|YP_001272796.1| - 0.06 13.1 1.2 0.087 12.6 0.9 1.4 1 1 0 1 1 1 0 zinc-ribbons C1_4 PF07975.7 gi|148642283|ref|YP_001272796.1| - 0.068 13.1 3.2 0.24 11.4 0.1 2.1 2 0 0 2 2 2 0 TFIIH C1-like domain DUF3279 PF11682.3 gi|148642283|ref|YP_001272796.1| - 0.068 12.7 0.4 0.079 12.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) DUF3797 PF12677.2 gi|148642283|ref|YP_001272796.1| - 0.092 12.3 4.4 0.17 11.5 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-LYAR PF08790.6 gi|148642283|ref|YP_001272796.1| - 0.1 12.3 0.1 0.1 12.3 0.0 1.7 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger DNA_RNApol_7kD PF03604.8 gi|148642283|ref|YP_001272796.1| - 0.11 12.0 4.8 0.14 11.6 1.0 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS91 PF14319.1 gi|148642283|ref|YP_001272796.1| - 0.16 11.5 1.5 0.21 11.0 1.0 1.3 1 1 0 1 1 1 0 Transposase zinc-binding domain DUF35_N PF12172.3 gi|148642283|ref|YP_001272796.1| - 0.21 11.5 0.9 8.1 6.4 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-HIT PF04438.11 gi|148642283|ref|YP_001272796.1| - 0.45 10.2 5.5 0.81 9.3 0.2 2.5 3 0 0 3 3 2 0 HIT zinc finger zinc_ribbon_5 PF13719.1 gi|148642283|ref|YP_001272796.1| - 2.4 7.7 7.5 1.2 8.8 0.6 2.5 2 1 1 3 3 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|148642283|ref|YP_001272796.1| - 3.1 7.5 7.6 1.4 8.6 0.6 2.5 2 1 1 3 3 3 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|148642283|ref|YP_001272796.1| - 3.4 7.2 4.9 2.4 7.7 0.1 2.5 2 1 1 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-IS66 PF13005.2 gi|148642283|ref|YP_001272796.1| - 3.5 7.6 6.1 5.6 7.0 0.1 2.7 1 1 2 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-ISL3 PF14690.1 gi|148642283|ref|YP_001272796.1| - 5.3 7.1 8.1 8.4 6.5 1.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SLAP PF03217.9 gi|148642284|ref|YP_001272797.1| - 0.018 15.2 0.1 0.025 14.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial surface layer protein DUF116 PF01976.12 gi|148642285|ref|YP_001272798.1| - 3.4e-49 166.3 2.4 4.3e-49 166.0 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 OAD_gamma PF04277.8 gi|148642285|ref|YP_001272798.1| - 5.3 7.4 6.3 30 5.0 4.7 1.9 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain HMG-CoA_red PF00368.13 gi|148642287|ref|YP_001272800.1| - 2.8e-143 477.1 4.3 3.1e-143 476.9 3.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CoA_binding PF02629.14 gi|148642288|ref|YP_001272801.1| - 4.8e-26 91.1 3.0 2.2e-25 88.9 0.0 2.9 3 1 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.14 gi|148642288|ref|YP_001272801.1| - 5.4e-18 65.0 0.4 8.2e-18 64.4 0.2 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|148642288|ref|YP_001272801.1| - 2.3e-11 43.4 0.0 3.6e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|148642288|ref|YP_001272801.1| - 0.0091 16.1 0.0 0.028 14.6 0.0 1.8 2 0 0 2 2 2 1 CoA binding domain DDE_Tnp_IS240 PF13610.1 gi|148642290|ref|YP_001272803.1| - 8.1e-07 29.0 6.4 2.9e-05 24.0 4.5 2.6 1 1 0 1 1 1 1 DDE domain MULE PF10551.4 gi|148642290|ref|YP_001272803.1| - 3.5e-06 27.0 0.2 1.1e-05 25.4 0.1 1.9 2 0 0 2 2 2 1 MULE transposase domain zf-ISL3 PF14690.1 gi|148642290|ref|YP_001272803.1| - 0.00041 20.3 3.0 0.0036 17.2 2.1 2.4 1 1 1 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 rve PF00665.21 gi|148642290|ref|YP_001272803.1| - 0.0018 18.3 0.2 0.019 15.0 0.0 2.3 2 0 0 2 2 2 1 Integrase core domain Zn-ribbon_8 PF09723.5 gi|148642290|ref|YP_001272803.1| - 0.083 12.8 2.3 9.6 6.2 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|148642290|ref|YP_001272803.1| - 0.81 9.3 5.5 9.5 5.9 0.5 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DHquinase_I PF01487.10 gi|148642291|ref|YP_001272804.1| - 2.6e-59 200.6 0.7 2.9e-59 200.4 0.5 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Radical_SAM PF04055.16 gi|148642291|ref|YP_001272804.1| - 0.026 14.6 1.0 0.21 11.7 0.7 2.2 1 1 2 3 3 3 0 Radical SAM superfamily DUF1265 PF06887.9 gi|148642291|ref|YP_001272804.1| - 0.12 12.0 0.9 0.27 10.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1265) Peptidase_S24 PF00717.18 gi|148642292|ref|YP_001272805.1| - 3.4e-15 55.4 0.8 7.3e-15 54.3 0.5 1.5 1 0 0 1 1 1 1 Peptidase S24-like Tox-HDC PF15656.1 gi|148642292|ref|YP_001272805.1| - 0.093 12.9 1.0 0.21 11.8 0.6 1.8 1 1 0 1 1 1 0 Toxin with a H, D/N and C signature P-II PF00543.17 gi|148642293|ref|YP_001272806.1| - 2.1e-37 127.6 3.0 2.4e-37 127.5 2.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.16 gi|148642294|ref|YP_001272807.1| - 2.9e-123 411.2 39.0 3.3e-123 411.1 27.1 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family DUF2099 PF09872.4 gi|148642294|ref|YP_001272807.1| - 0.34 9.9 1.6 0.58 9.1 1.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2099) PGG PF13962.1 gi|148642295|ref|YP_001272808.1| - 0.031 13.8 0.1 0.038 13.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function HD PF01966.17 gi|148642296|ref|YP_001272809.1| - 2e-14 53.6 0.1 4.4e-14 52.5 0.1 1.6 1 0 0 1 1 1 1 HD domain DUF771 PF05595.6 gi|148642296|ref|YP_001272809.1| - 0.00093 19.0 0.1 0.013 15.3 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF771) HDOD PF08668.7 gi|148642296|ref|YP_001272809.1| - 0.15 11.2 0.0 0.34 10.1 0.0 1.6 1 0 0 1 1 1 0 HDOD domain Flavoprotein PF02441.14 gi|148642297|ref|YP_001272810.1| - 1.6e-29 102.1 0.1 2.3e-29 101.6 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Methyltransf_18 PF12847.2 gi|148642298|ref|YP_001272811.1| - 1.7e-18 67.1 0.1 2.9e-18 66.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|148642298|ref|YP_001272811.1| - 4.1e-14 52.4 1.4 9.2e-14 51.2 1.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|148642298|ref|YP_001272811.1| - 3.8e-10 39.4 0.3 8e-10 38.3 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase small domain PrmA PF06325.8 gi|148642298|ref|YP_001272811.1| - 1.1e-08 34.6 3.1 1.3e-08 34.3 2.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|148642298|ref|YP_001272811.1| - 1.5e-08 34.4 0.0 2.3e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|148642298|ref|YP_001272811.1| - 7.1e-08 32.1 0.5 1.1e-07 31.5 0.3 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase RrnaAD PF00398.15 gi|148642298|ref|YP_001272811.1| - 1.3e-07 30.8 0.0 1.7e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|148642298|ref|YP_001272811.1| - 4.6e-07 30.2 0.1 9.2e-07 29.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|148642298|ref|YP_001272811.1| - 7.8e-07 28.6 0.0 1.5e-06 27.7 0.0 1.4 2 0 0 2 2 1 1 Conserved hypothetical protein 95 DUF633 PF04816.7 gi|148642298|ref|YP_001272811.1| - 1e-06 28.2 0.7 1.3e-06 27.9 0.5 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF633) Methyltransf_26 PF13659.1 gi|148642298|ref|YP_001272811.1| - 1.1e-06 28.7 0.0 1.5e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148642298|ref|YP_001272811.1| - 1.6e-06 27.8 0.0 3.9e-06 26.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|148642298|ref|YP_001272811.1| - 2.2e-06 26.9 0.5 3.5e-06 26.2 0.2 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|148642298|ref|YP_001272811.1| - 4.7e-06 26.9 0.2 1e-05 25.8 0.1 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|148642298|ref|YP_001272811.1| - 7.4e-06 26.2 0.0 5.1e-05 23.5 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|148642298|ref|YP_001272811.1| - 1.7e-05 24.5 0.7 2.9e-05 23.7 0.4 1.4 1 1 0 1 1 1 1 Met-10+ like-protein PCMT PF01135.14 gi|148642298|ref|YP_001272811.1| - 3.1e-05 23.6 0.1 4.1e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|148642298|ref|YP_001272811.1| - 0.00012 21.2 0.0 0.00016 20.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.1 gi|148642298|ref|YP_001272811.1| - 0.00025 21.8 0.0 0.00036 21.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|148642298|ref|YP_001272811.1| - 0.00033 20.0 0.0 0.00044 19.6 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Spermine_synth PF01564.12 gi|148642298|ref|YP_001272811.1| - 0.0006 18.8 0.1 0.001 18.0 0.1 1.4 1 1 0 1 1 1 1 Spermine/spermidine synthase GidB PF02527.10 gi|148642298|ref|YP_001272811.1| - 0.0012 17.9 0.2 0.0017 17.5 0.1 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G TehB PF03848.9 gi|148642298|ref|YP_001272811.1| - 0.0013 17.8 0.1 0.002 17.3 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB MethyltransfD12 PF02086.10 gi|148642298|ref|YP_001272811.1| - 0.0018 17.7 0.1 0.0028 17.1 0.1 1.3 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_32 PF13679.1 gi|148642298|ref|YP_001272811.1| - 0.0041 16.8 0.0 0.0062 16.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|148642298|ref|YP_001272811.1| - 0.0061 15.6 0.1 0.012 14.6 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_5 PF01795.14 gi|148642298|ref|YP_001272811.1| - 0.0079 15.5 0.1 0.11 11.6 0.0 2.0 1 1 1 2 2 2 1 MraW methylase family rRNA_methylase PF06962.7 gi|148642298|ref|YP_001272811.1| - 0.014 15.0 0.1 0.086 12.5 0.0 2.0 2 0 0 2 2 2 0 Putative rRNA methylase FIST PF08495.5 gi|148642298|ref|YP_001272811.1| - 0.035 13.2 0.0 0.044 12.9 0.0 1.1 1 0 0 1 1 1 0 FIST N domain UPF0004 PF00919.15 gi|148642298|ref|YP_001272811.1| - 0.036 13.8 0.5 0.15 11.9 0.1 2.2 2 2 1 3 3 3 0 Uncharacterized protein family UPF0004 FtsJ PF01728.14 gi|148642298|ref|YP_001272811.1| - 0.039 13.9 0.1 0.08 12.9 0.1 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase tRNA_U5-meth_tr PF05958.6 gi|148642298|ref|YP_001272811.1| - 0.041 12.5 0.1 0.059 12.0 0.1 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_3 PF01596.12 gi|148642298|ref|YP_001272811.1| - 0.05 12.6 0.1 0.13 11.2 0.0 1.6 2 0 0 2 2 2 0 O-methyltransferase LRR_6 PF13516.1 gi|148642298|ref|YP_001272811.1| - 0.062 13.3 0.4 9.7 6.6 0.5 2.8 2 0 0 2 2 2 0 Leucine Rich repeat Methyltransf_8 PF05148.10 gi|148642298|ref|YP_001272811.1| - 0.072 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Hypothetical methyltransferase DOT1 PF08123.8 gi|148642298|ref|YP_001272811.1| - 0.098 11.9 0.1 0.26 10.5 0.0 1.7 2 0 0 2 2 2 0 Histone methylation protein DOT1 NTP_transf_3 PF12804.2 gi|148642300|ref|YP_001272813.1| - 3.1e-30 105.3 0.0 3.8e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.21 gi|148642300|ref|YP_001272813.1| - 0.00014 21.6 0.5 0.00019 21.1 0.3 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transferase PF00483.18 gi|148642300|ref|YP_001272813.1| - 0.00014 21.2 0.0 0.0002 20.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.14 gi|148642300|ref|YP_001272813.1| - 0.006 16.1 0.0 0.014 14.9 0.0 1.7 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF643 PF04867.7 gi|148642300|ref|YP_001272813.1| - 0.11 12.9 6.9 0.27 11.6 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF643) ISN1 PF06437.6 gi|148642300|ref|YP_001272813.1| - 0.11 11.2 0.6 4.3 5.9 0.1 2.1 2 0 0 2 2 2 0 IMP-specific 5'-nucleotidase RNase_PH PF01138.16 gi|148642301|ref|YP_001272814.1| - 2.7e-30 105.3 0.0 3.9e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|148642301|ref|YP_001272814.1| - 1.6e-14 53.6 0.3 5.2e-14 51.9 0.1 2.0 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|148642302|ref|YP_001272815.1| - 7.7e-36 123.3 0.0 1.1e-35 122.7 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|148642302|ref|YP_001272815.1| - 1e-14 54.1 1.0 2.1e-14 53.1 0.7 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 ECR1_N PF14382.1 gi|148642303|ref|YP_001272816.1| - 6.4e-12 44.5 0.0 1.1e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_1 PF00013.24 gi|148642303|ref|YP_001272816.1| - 1.2e-11 44.1 2.9 2.5e-11 43.0 2.0 1.6 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|148642303|ref|YP_001272816.1| - 3.8e-08 32.8 0.3 8.1e-08 31.7 0.2 1.6 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|148642303|ref|YP_001272816.1| - 9.1e-05 21.9 2.7 0.0003 20.2 1.8 2.0 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|148642303|ref|YP_001272816.1| - 0.0038 17.2 2.0 0.0038 17.2 1.4 2.6 2 1 1 3 3 3 1 S1 RNA binding domain KH_4 PF13083.1 gi|148642303|ref|YP_001272816.1| - 0.18 11.4 2.8 0.38 10.4 0.3 2.6 2 0 0 2 2 2 0 KH domain SBDS PF01172.13 gi|148642304|ref|YP_001272817.1| - 1.3e-24 85.7 0.2 2.2e-24 85.0 0.1 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|148642304|ref|YP_001272817.1| - 9.4e-17 60.8 0.0 1.5e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.21 gi|148642305|ref|YP_001272818.1| - 1.5e-63 213.5 1.3 2.3e-63 212.9 0.9 1.3 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|148642305|ref|YP_001272818.1| - 6.8e-15 54.0 0.1 1.2e-14 53.2 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature Spo0A_C PF08769.6 gi|148642305|ref|YP_001272818.1| - 0.0073 16.1 0.1 0.058 13.2 0.3 2.2 2 0 0 2 2 2 1 Sporulation initiation factor Spo0A C terminal RNase_P_Rpp14 PF01900.14 gi|148642306|ref|YP_001272819.1| - 3.5e-25 88.0 0.1 3.9e-25 87.8 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family NHR2 PF08788.6 gi|148642306|ref|YP_001272819.1| - 0.082 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 NHR2 domain like RNase_P_p30 PF01876.11 gi|148642307|ref|YP_001272820.1| - 4.3e-26 90.9 1.0 7.9e-26 90.0 0.7 1.4 1 0 0 1 1 1 1 RNase P subunit p30 DUF4015 PF13200.1 gi|148642307|ref|YP_001272820.1| - 0.015 14.1 0.1 0.14 10.9 0.2 2.0 1 1 1 2 2 2 0 Putative glycosyl hydrolase domain DUF749 PF05370.6 gi|148642307|ref|YP_001272820.1| - 9.6 6.2 7.4 7.9 6.4 1.3 3.0 2 2 1 3 3 3 0 Domain of unknown function (DUF749) O-antigen_lig PF13425.1 gi|148642308|ref|YP_001272821.1| - 0.018 15.0 9.3 0.02 14.8 6.4 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Lung_7-TM_R PF06814.8 gi|148642308|ref|YP_001272821.1| - 0.025 13.5 3.8 0.034 13.1 2.6 1.3 1 0 0 1 1 1 0 Lung seven transmembrane receptor DUF4199 PF13858.1 gi|148642308|ref|YP_001272821.1| - 0.057 13.3 12.5 0.064 13.1 8.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) EmrE PF13536.1 gi|148642308|ref|YP_001272821.1| - 0.55 10.4 8.0 0.084 13.0 2.4 1.7 1 1 0 1 1 1 0 Multidrug resistance efflux transporter DUF3043 PF11241.3 gi|148642308|ref|YP_001272821.1| - 1.2 8.7 6.4 4.5 6.8 4.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3043) DUF4293 PF14126.1 gi|148642308|ref|YP_001272821.1| - 1.5 8.7 12.2 6.7 6.6 8.4 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4293) SpoIIIAC PF06686.6 gi|148642308|ref|YP_001272821.1| - 1.5 8.6 5.9 3.7 7.4 0.3 2.2 2 0 0 2 2 2 0 Stage III sporulation protein AC/AD protein family Tetraspannin PF00335.15 gi|148642308|ref|YP_001272821.1| - 1.8 7.8 10.0 3.7 6.7 7.0 1.5 1 1 0 1 1 1 0 Tetraspanin family zinc_ribbon_2 PF13240.1 gi|148642309|ref|YP_001272822.1| - 5.6e-09 35.2 5.7 1.2e-08 34.2 3.9 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148642309|ref|YP_001272822.1| - 1.1e-07 30.7 3.2 1.9e-07 30.0 2.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148642309|ref|YP_001272822.1| - 1.2e-06 28.1 1.2 2e-06 27.5 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon PMBR PF09373.5 gi|148642309|ref|YP_001272822.1| - 9.9e-05 22.1 0.8 0.0076 16.1 0.0 2.8 3 0 0 3 3 3 1 Pseudomurein-binding repeat UPF0547 PF10571.4 gi|148642309|ref|YP_001272822.1| - 0.00054 19.5 1.9 0.001 18.6 1.3 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|148642309|ref|YP_001272822.1| - 0.054 13.1 2.8 5.6 6.7 0.4 2.3 2 0 0 2 2 2 0 Nudix N-terminal Ion_trans PF00520.26 gi|148642309|ref|YP_001272822.1| - 0.086 12.0 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Ion transport protein zinc-ribbons_6 PF07191.7 gi|148642309|ref|YP_001272822.1| - 0.16 11.7 0.8 0.25 11.1 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|148642309|ref|YP_001272822.1| - 0.21 11.2 1.3 0.31 10.7 0.9 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-DHHC PF01529.15 gi|148642309|ref|YP_001272822.1| - 0.43 9.9 3.3 0.38 10.1 0.8 1.8 2 0 0 2 2 2 0 DHHC palmitoyltransferase NOB1_Zn_bind PF08772.6 gi|148642309|ref|YP_001272822.1| - 2.6 7.9 7.1 7.7 6.4 0.2 2.3 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF2116 PF09889.4 gi|148642309|ref|YP_001272822.1| - 4.1 7.2 6.0 3.7 7.3 0.4 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zinc_ribbon_2 PF13240.1 gi|148642310|ref|YP_001272823.1| - 4.7e-06 25.9 6.0 7.8e-06 25.2 4.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148642310|ref|YP_001272823.1| - 5e-06 25.5 3.8 8e-06 24.8 2.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148642310|ref|YP_001272823.1| - 1.8e-05 24.4 4.4 2.8e-05 23.8 3.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon SpoIIIAH PF12685.2 gi|148642310|ref|YP_001272823.1| - 0.00054 19.5 0.2 0.00063 19.2 0.1 1.2 1 0 0 1 1 1 1 SpoIIIAH-like protein DUF4307 PF14155.1 gi|148642310|ref|YP_001272823.1| - 0.044 13.5 0.4 0.2 11.4 0.0 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) DUF912 PF06024.7 gi|148642310|ref|YP_001272823.1| - 0.061 13.3 1.6 0.12 12.4 0.1 1.9 1 1 1 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) YhfH PF14149.1 gi|148642310|ref|YP_001272823.1| - 0.08 12.7 4.1 0.13 12.0 0.0 2.4 1 1 1 2 2 2 0 YhfH-like protein DUF1449 PF07290.6 gi|148642310|ref|YP_001272823.1| - 0.12 11.6 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1449) Nudix_N_2 PF14803.1 gi|148642310|ref|YP_001272823.1| - 0.69 9.6 2.9 0.74 9.5 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal Herpes_capsid PF06112.6 gi|148642310|ref|YP_001272823.1| - 0.82 9.7 14.7 0.06 13.3 5.6 2.1 2 0 0 2 2 2 0 Gammaherpesvirus capsid protein DUF1610 PF07754.6 gi|148642310|ref|YP_001272823.1| - 1.9 8.7 7.0 11 6.1 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) GCC2_GCC3 PF07699.8 gi|148642310|ref|YP_001272823.1| - 7 6.3 8.4 2.4 7.8 2.4 2.7 2 1 0 2 2 2 0 GCC2 and GCC3 zinc_ribbon_2 PF13240.1 gi|148642311|ref|YP_001272824.1| - 2.4e-10 39.5 2.0 4.4e-10 38.7 1.4 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148642311|ref|YP_001272824.1| - 3.1e-09 35.7 1.6 5e-09 35.0 1.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148642311|ref|YP_001272824.1| - 3.9e-06 26.5 1.4 6.8e-06 25.8 1.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|148642311|ref|YP_001272824.1| - 1.6e-05 24.5 0.2 2.9e-05 23.6 0.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|148642311|ref|YP_001272824.1| - 0.0048 16.3 0.5 0.85 9.1 0.1 2.9 3 0 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.1 gi|148642311|ref|YP_001272824.1| - 0.0054 16.3 1.0 2 8.1 0.0 2.5 2 0 0 2 2 2 2 Nudix N-terminal Prok-RING_1 PF14446.1 gi|148642311|ref|YP_001272824.1| - 0.0055 16.3 1.6 0.0098 15.6 1.1 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Baculo_11_kDa PF06143.6 gi|148642311|ref|YP_001272824.1| - 0.13 11.6 0.2 0.21 10.9 0.2 1.3 1 0 0 1 1 1 0 Baculovirus 11 kDa family TF_Zn_Ribbon PF08271.7 gi|148642311|ref|YP_001272824.1| - 0.16 11.3 7.5 0.35 10.2 2.8 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding DUF2116 PF09889.4 gi|148642311|ref|YP_001272824.1| - 1.1 9.1 7.6 0.24 11.2 0.5 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) RNA_POL_M_15KD PF02150.11 gi|148642311|ref|YP_001272824.1| - 2.4 7.9 8.0 2.3 7.9 0.7 2.5 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit MatE PF01554.13 gi|148642312|ref|YP_001272825.1| - 4e-48 163.0 42.5 4.2e-32 111.0 8.0 2.9 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|148642312|ref|YP_001272825.1| - 3.4e-10 39.8 48.6 1.1e-07 31.7 12.1 5.0 2 1 2 4 4 4 3 Polysaccharide biosynthesis C-terminal domain TraS PF10624.4 gi|148642312|ref|YP_001272825.1| - 0.1 12.1 4.0 0.24 10.9 2.8 1.6 1 0 0 1 1 1 0 Plasmid conjugative transfer entry exclusion protein TraS Gly-zipper_OmpA PF13436.1 gi|148642312|ref|YP_001272825.1| - 0.86 9.2 4.9 0.27 10.8 0.5 2.3 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain MtrG PF04210.8 gi|148642312|ref|YP_001272825.1| - 7.7 6.2 6.5 1.3 8.7 0.0 3.1 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G 2TM PF13239.1 gi|148642313|ref|YP_001272826.1| - 5.5e-25 87.2 9.4 6.4e-25 87.0 6.5 1.0 1 0 0 1 1 1 1 2TM domain Ndc1_Nup PF09531.5 gi|148642313|ref|YP_001272826.1| - 1.1 7.5 4.3 1.2 7.4 3.0 1.0 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Dexa_ind PF15198.1 gi|148642313|ref|YP_001272826.1| - 1.3 8.9 4.4 0.41 10.5 1.2 1.6 1 1 1 2 2 2 0 Dexamethasone-induced DUF3753 PF12575.3 gi|148642313|ref|YP_001272826.1| - 2.9 7.7 5.3 2.2 8.1 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3753) TP6A_N PF04406.9 gi|148642314|ref|YP_001272827.1| - 0.21 11.3 1.1 0.28 10.8 0.8 1.4 1 1 0 1 1 1 0 Type IIB DNA topoisomerase HTH_45 PF14947.1 gi|148642315|ref|YP_001272828.1| - 3.3e-07 30.0 0.6 4.6e-07 29.5 0.4 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|148642315|ref|YP_001272828.1| - 0.00027 20.5 0.3 0.0016 18.1 0.0 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|148642315|ref|YP_001272828.1| - 0.001 19.3 0.1 0.0019 18.4 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|148642315|ref|YP_001272828.1| - 0.0026 17.4 0.2 0.0047 16.5 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) PadR PF03551.9 gi|148642315|ref|YP_001272828.1| - 0.0033 17.1 0.0 0.0049 16.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Rrf2 PF02082.15 gi|148642315|ref|YP_001272828.1| - 0.0084 16.1 0.1 0.011 15.8 0.1 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.1 gi|148642315|ref|YP_001272828.1| - 0.013 15.5 0.3 0.022 14.7 0.1 1.5 1 1 1 2 2 2 0 Winged helix DNA-binding domain DUF505 PF04458.7 gi|148642315|ref|YP_001272828.1| - 0.016 13.3 1.0 0.017 13.2 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_Crp_2 PF13545.1 gi|148642315|ref|YP_001272828.1| - 0.018 14.8 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Replic_Relax PF13814.1 gi|148642315|ref|YP_001272828.1| - 0.029 14.2 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_36 PF13730.1 gi|148642315|ref|YP_001272828.1| - 0.041 14.0 0.2 0.059 13.5 0.1 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|148642315|ref|YP_001272828.1| - 0.043 13.3 0.4 0.077 12.5 0.1 1.7 1 1 0 1 1 1 0 TFIIE alpha subunit HxlR PF01638.12 gi|148642315|ref|YP_001272828.1| - 0.06 12.9 0.1 0.079 12.5 0.1 1.3 1 1 0 1 1 1 0 HxlR-like helix-turn-helix DDE_Tnp_IS66 PF03050.9 gi|148642316|ref|YP_001272829.1| - 4.5e-08 32.6 3.0 2.4e-07 30.2 2.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family Zn_Tnp_IS1595 PF12760.2 gi|148642316|ref|YP_001272829.1| - 0.00061 19.5 2.0 0.0015 18.2 1.4 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148642316|ref|YP_001272829.1| - 0.03 13.6 1.7 0.28 10.5 1.1 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|148642316|ref|YP_001272829.1| - 0.063 13.2 3.8 3.5 7.6 1.0 2.8 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|148642316|ref|YP_001272829.1| - 0.098 12.9 0.2 0.31 11.3 0.1 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|148642316|ref|YP_001272829.1| - 0.33 10.6 4.6 6 6.5 3.2 2.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|148642316|ref|YP_001272829.1| - 0.68 10.0 9.3 0.53 10.3 0.4 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TetR_C_8 PF14278.1 gi|148642316|ref|YP_001272829.1| - 1.3 9.4 6.9 0.75 10.2 0.5 3.6 2 1 0 3 3 3 0 Transcriptional regulator C-terminal region Transposase_mut PF00872.13 gi|148642316|ref|YP_001272829.1| - 4.1 5.8 7.2 25 3.2 2.6 2.9 2 1 1 3 3 3 0 Transposase, Mutator family DZR PF12773.2 gi|148642317|ref|YP_001272830.1| - 1.5e-07 31.1 11.9 2.7e-07 30.3 8.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|148642317|ref|YP_001272830.1| - 1.8e-07 30.1 10.8 6.8e-05 21.9 1.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148642317|ref|YP_001272830.1| - 1.3e-06 27.6 14.5 3.6e-05 23.1 2.1 2.9 2 1 0 2 2 2 2 zinc-ribbon domain PolC_DP2 PF03833.8 gi|148642317|ref|YP_001272830.1| - 0.0052 14.5 1.5 0.0062 14.2 1.0 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Zn_ribbon_2 PF12674.2 gi|148642317|ref|YP_001272830.1| - 0.012 15.8 1.8 0.012 15.8 1.2 2.4 2 1 1 3 3 3 0 Putative zinc ribbon domain DUF955 PF06114.8 gi|148642317|ref|YP_001272830.1| - 0.03 14.0 0.0 0.061 13.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF955) Ecl1 PF12855.2 gi|148642317|ref|YP_001272830.1| - 1.5 8.1 13.0 0.91 8.8 6.3 2.7 2 1 1 3 3 3 0 Life-span regulatory factor DiS_P_DiS PF06750.8 gi|148642317|ref|YP_001272830.1| - 2.1 8.2 4.3 8.9 6.1 3.0 2.0 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain C1_1 PF00130.17 gi|148642317|ref|YP_001272830.1| - 3.1 7.5 9.6 6.3 6.6 0.1 3.0 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|148642317|ref|YP_001272830.1| - 3.4 7.5 9.2 1.8 8.3 1.3 2.3 1 1 1 2 2 2 0 zinc-ribbons zf-Di19 PF05605.7 gi|148642317|ref|YP_001272830.1| - 4.1 7.6 7.1 0.76 9.9 0.5 2.4 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Cript PF10235.4 gi|148642317|ref|YP_001272830.1| - 5.8 7.3 9.3 0.81 10.0 2.5 2.2 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT DZR PF12773.2 gi|148642318|ref|YP_001272831.1| - 3.4e-22 77.9 43.6 1.6e-06 27.8 5.3 6.2 3 1 3 6 6 6 6 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|148642318|ref|YP_001272831.1| - 3.8e-18 64.3 53.2 0.00011 21.5 2.4 7.5 7 0 0 7 7 7 7 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148642318|ref|YP_001272831.1| - 3e-16 58.0 62.8 0.0005 19.1 1.4 7.4 7 0 0 7 7 7 7 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|148642318|ref|YP_001272831.1| - 0.01 15.5 36.8 2.7 7.7 0.0 9.2 9 1 0 9 9 9 0 Nudix N-terminal DUF2248 PF10005.4 gi|148642318|ref|YP_001272831.1| - 0.036 12.9 0.4 0.036 12.9 0.3 3.3 3 1 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2248) zf-NADH-PPase PF09297.6 gi|148642318|ref|YP_001272831.1| - 0.1 12.1 26.4 1.7 8.2 0.2 6.8 6 1 1 7 7 7 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|148642318|ref|YP_001272831.1| - 0.11 12.1 0.3 0.11 12.1 0.2 8.5 8 1 1 9 9 9 0 Uncharacterised protein family UPF0547 GFA PF04828.9 gi|148642318|ref|YP_001272831.1| - 0.78 9.7 38.2 11 6.0 4.7 7.1 2 2 5 7 7 7 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_2 PF13240.1 gi|148642319|ref|YP_001272832.1| - 3.8e-05 23.0 7.8 6e-05 22.3 5.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148642319|ref|YP_001272832.1| - 4.5e-05 23.1 0.4 6.2e-05 22.7 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|148642319|ref|YP_001272832.1| - 0.00014 20.9 6.8 0.00023 20.2 4.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-tcix PF14952.1 gi|148642319|ref|YP_001272832.1| - 0.0031 16.8 0.7 0.0066 15.7 0.5 1.6 1 0 0 1 1 1 1 Putative treble-clef, zinc-finger, Zn-binding MpPF26 PF07666.6 gi|148642319|ref|YP_001272832.1| - 0.017 14.9 5.5 0.032 14.1 3.8 1.4 1 0 0 1 1 1 0 M penetrans paralogue family 26 Nudix_N_2 PF14803.1 gi|148642319|ref|YP_001272832.1| - 0.017 14.7 2.3 2.2 8.0 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal Colicin_im PF03857.8 gi|148642319|ref|YP_001272832.1| - 0.025 14.3 0.4 0.035 13.8 0.3 1.3 1 0 0 1 1 1 0 Colicin immunity protein RNA_POL_M_15KD PF02150.11 gi|148642319|ref|YP_001272832.1| - 0.23 11.1 4.9 3.7 7.3 0.3 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-RanBP PF00641.13 gi|148642319|ref|YP_001272832.1| - 0.78 8.8 3.3 1.4 8.1 2.3 1.4 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others UPF0547 PF10571.4 gi|148642319|ref|YP_001272832.1| - 2.9 7.6 7.4 24 4.7 5.1 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.5 gi|148642319|ref|YP_001272832.1| - 7.4 6.1 6.5 16 5.0 0.3 2.7 3 0 0 3 3 3 0 A2L zinc ribbon domain DHH PF01368.15 gi|148642320|ref|YP_001272833.1| - 1.6e-13 50.5 0.3 3.9e-13 49.2 0.2 1.7 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|148642320|ref|YP_001272833.1| - 5.1e-08 32.6 0.3 1.6e-07 31.0 0.1 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|148642320|ref|YP_001272833.1| - 1.9e-06 27.8 0.5 2.1e-05 24.5 0.3 2.6 1 1 0 1 1 1 1 S1 RNA binding domain DnaJ_CXXCXGXG PF00684.14 gi|148642320|ref|YP_001272833.1| - 4.4e-06 26.6 22.8 0.012 15.6 7.6 2.7 1 1 0 2 2 2 2 DnaJ central domain Cytochrom_CIII PF02085.11 gi|148642320|ref|YP_001272833.1| - 0.0087 16.1 6.9 0.0087 16.1 4.8 2.1 1 1 0 1 1 1 1 Class III cytochrome C family Rep_fac-A_3 PF08661.6 gi|148642320|ref|YP_001272833.1| - 0.03 14.2 0.1 0.076 12.9 0.1 1.6 1 0 0 1 1 1 0 Replication factor A protein 3 DZR PF12773.2 gi|148642320|ref|YP_001272833.1| - 3.7 7.4 19.6 0.41 10.5 1.4 3.0 1 1 0 2 2 2 0 Double zinc ribbon Pup_ligase PF03136.10 gi|148642321|ref|YP_001272834.1| - 0.00045 18.9 1.0 0.00065 18.4 0.7 1.2 1 0 0 1 1 1 1 Pup-ligase protein Tetraspannin PF00335.15 gi|148642321|ref|YP_001272834.1| - 0.018 14.3 0.6 0.023 13.9 0.4 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF4398 PF14346.1 gi|148642321|ref|YP_001272834.1| - 0.041 13.9 2.5 0.38 10.8 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) TarH PF02203.10 gi|148642321|ref|YP_001272834.1| - 0.043 13.6 1.9 0.083 12.7 1.3 1.6 1 1 0 1 1 1 0 Tar ligand binding domain homologue ATP-synt_B PF00430.13 gi|148642321|ref|YP_001272834.1| - 0.045 13.5 0.3 0.19 11.5 0.0 1.9 1 1 0 2 2 2 0 ATP synthase B/B' CF(0) DUF929 PF06053.6 gi|148642321|ref|YP_001272834.1| - 0.055 12.5 3.3 0.18 10.8 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF929) DUF948 PF06103.6 gi|148642321|ref|YP_001272834.1| - 0.1 12.4 0.1 0.24 11.2 0.0 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF4363 PF14276.1 gi|148642321|ref|YP_001272834.1| - 0.31 10.7 8.4 0.2 11.3 2.9 2.5 2 2 0 2 2 2 0 Domain of unknown function (DUF4363) ETRAMP PF09716.5 gi|148642321|ref|YP_001272834.1| - 0.33 10.9 2.6 2.9 7.9 1.8 2.2 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) FtsH_ext PF06480.10 gi|148642321|ref|YP_001272834.1| - 0.34 11.0 2.9 2.1 8.5 2.0 2.0 1 1 0 1 1 1 0 FtsH Extracellular ABC2_membrane_3 PF12698.2 gi|148642321|ref|YP_001272834.1| - 7.9 5.4 16.0 16 4.4 11.1 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein Desulfoferrodox PF01880.13 gi|148642322|ref|YP_001272835.1| - 4.6e-24 84.5 0.0 6.4e-24 84.0 0.0 1.2 1 0 0 1 1 1 1 Desulfoferrodoxin Desulfoferrod_N PF06397.7 gi|148642322|ref|YP_001272835.1| - 8e-06 25.1 1.8 8e-06 25.1 1.2 1.9 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.5 gi|148642322|ref|YP_001272835.1| - 0.0094 15.8 2.5 0.012 15.5 1.0 1.7 2 0 0 2 2 2 1 Zinc ribbon domain NifU_N PF01592.11 gi|148642323|ref|YP_001272836.1| - 4.9e-51 171.9 0.1 5.3e-51 171.8 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain Aminotran_5 PF00266.14 gi|148642324|ref|YP_001272837.1| - 2.1e-88 296.5 0.0 2.4e-88 296.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|148642324|ref|YP_001272837.1| - 7.6e-06 25.2 0.0 9.5e-06 24.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|148642324|ref|YP_001272837.1| - 0.00027 20.0 0.0 0.00041 19.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|148642325|ref|YP_001272838.1| - 4.1e-138 459.8 0.0 4.7e-138 459.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|148642325|ref|YP_001272838.1| - 1.7e-12 47.0 0.1 2.6e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|148642325|ref|YP_001272838.1| - 5.8e-10 38.6 0.0 8.4e-10 38.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|148642325|ref|YP_001272838.1| - 4e-06 25.8 0.0 7e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|148642325|ref|YP_001272838.1| - 1.2e-05 23.7 0.1 2.8e-05 22.6 0.1 1.6 1 1 0 1 1 1 1 Methionine gamma-lyase Beta_elim_lyase PF01212.16 gi|148642325|ref|YP_001272838.1| - 0.011 14.8 0.0 0.021 13.9 0.0 1.6 1 1 0 1 1 1 0 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|148642325|ref|YP_001272838.1| - 0.061 11.7 0.0 0.089 11.2 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) DUF4399 PF14347.1 gi|148642326|ref|YP_001272839.1| - 1.2e-30 105.3 3.5 6.1e-06 26.1 0.0 5.9 3 1 2 5 5 5 4 Domain of unknown function (DUF4399) DUF1565 PF07602.6 gi|148642326|ref|YP_001272839.1| - 1.1e-06 27.9 70.8 0.00018 20.7 15.7 9.1 5 4 2 8 8 8 4 Protein of unknown function (DUF1565) DUF4198 PF10670.4 gi|148642326|ref|YP_001272839.1| - 0.0072 16.3 6.7 1.6 8.7 0.0 5.0 5 0 0 5 5 5 2 Domain of unknown function (DUF4198) FMN_red PF03358.10 gi|148642327|ref|YP_001272840.1| - 3.7e-22 78.4 0.0 4.3e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|148642327|ref|YP_001272840.1| - 8.2e-15 54.8 0.0 1.1e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold tRNA-synt_1e PF01406.14 gi|148642328|ref|YP_001272841.1| - 1.4e-116 388.9 0.4 2.1e-116 388.2 0.3 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|148642328|ref|YP_001272841.1| - 2.1e-19 69.4 3.2 7.8e-10 37.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|148642328|ref|YP_001272841.1| - 8.6e-11 40.5 0.2 1.2e-08 33.4 0.0 2.3 1 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.6 gi|148642328|ref|YP_001272841.1| - 1e-10 41.6 0.4 2.8e-10 40.3 0.3 1.7 1 0 0 1 1 1 1 DALR domain tRNA-synt_1f PF01921.13 gi|148642328|ref|YP_001272841.1| - 0.00029 19.6 0.4 0.0014 17.4 0.1 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1c PF00749.16 gi|148642328|ref|YP_001272841.1| - 0.01 14.5 0.1 0.23 10.0 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1d PF00750.14 gi|148642328|ref|YP_001272841.1| - 0.036 12.8 1.6 0.17 10.6 0.0 2.8 3 1 0 4 4 4 0 tRNA synthetases class I (R) HTH_3 PF01381.17 gi|148642329|ref|YP_001272842.1| - 2.9e-05 23.8 0.0 0.00012 21.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix DUF4473 PF14747.1 gi|148642329|ref|YP_001272842.1| - 0.011 15.9 0.1 0.02 15.0 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4473) HTH_37 PF13744.1 gi|148642329|ref|YP_001272842.1| - 0.018 14.8 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|148642329|ref|YP_001272842.1| - 0.023 14.7 0.1 0.071 13.1 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Sar8_2 PF03058.9 gi|148642329|ref|YP_001272842.1| - 0.036 14.3 0.4 0.071 13.4 0.2 1.5 1 1 0 1 1 1 0 Sar8.2 family DUF3939 PF13075.1 gi|148642329|ref|YP_001272842.1| - 0.072 12.8 0.0 0.097 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3939) HTH_26 PF13443.1 gi|148642329|ref|YP_001272842.1| - 0.1 12.7 0.3 0.94 9.7 0.0 2.3 2 1 1 3 3 3 0 Cro/C1-type HTH DNA-binding domain Hexapep PF00132.19 gi|148642330|ref|YP_001272843.1| - 2.8e-11 42.3 14.0 3.1e-07 29.5 0.9 3.7 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|148642330|ref|YP_001272843.1| - 0.0018 17.8 10.7 0.12 11.9 0.5 2.5 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|148642330|ref|YP_001272843.1| - 0.0028 17.8 0.0 0.0058 16.8 0.0 1.5 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal PALP PF00291.20 gi|148642331|ref|YP_001272844.1| - 1.5e-61 208.3 0.4 1.6e-61 208.1 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF2007 PF09413.5 gi|148642331|ref|YP_001272844.1| - 0.081 12.7 0.3 0.36 10.6 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF2007) HhH-GPD PF00730.20 gi|148642332|ref|YP_001272845.1| - 8.5e-25 87.1 0.0 1.3e-24 86.6 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|148642332|ref|YP_001272845.1| - 5.8e-10 38.3 0.0 1.4e-08 33.9 0.0 2.7 2 1 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|148642332|ref|YP_001272845.1| - 8.8e-05 22.5 2.8 0.00017 21.6 1.9 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III DUF2400 PF09674.5 gi|148642332|ref|YP_001272845.1| - 0.0013 18.4 0.1 0.0067 16.1 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2400) HHH_5 PF14520.1 gi|148642332|ref|YP_001272845.1| - 0.0015 18.6 0.0 0.54 10.4 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain DUF4264 PF14084.1 gi|148642332|ref|YP_001272845.1| - 0.0073 15.6 1.4 0.35 10.2 0.3 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF4264) HHH_8 PF14716.1 gi|148642332|ref|YP_001272845.1| - 0.066 13.3 0.0 8.6 6.6 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|148642332|ref|YP_001272845.1| - 0.099 12.5 0.0 6.8 6.6 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif EPSP_synthase PF00275.15 gi|148642333|ref|YP_001272846.1| - 3e-118 394.9 0.2 6.1e-118 393.8 0.1 1.5 1 1 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HATPase_c_4 PF13749.1 gi|148642333|ref|YP_001272846.1| - 0.037 13.8 0.0 0.094 12.5 0.0 1.7 1 0 0 1 1 1 0 ATP-dependent DNA helicase recG C-terminal Methyltransf_11 PF08241.7 gi|148642334|ref|YP_001272847.1| - 1.4e-07 31.8 0.0 3e-07 30.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148642334|ref|YP_001272847.1| - 2.7e-06 27.2 0.0 4e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148642334|ref|YP_001272847.1| - 2.1e-05 25.0 0.0 5.2e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|148642334|ref|YP_001272847.1| - 9.9e-05 21.9 0.1 0.0011 18.6 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|148642334|ref|YP_001272847.1| - 0.0026 18.0 0.0 0.0068 16.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|148642334|ref|YP_001272847.1| - 0.013 14.5 0.1 0.19 10.7 0.0 2.0 1 1 1 2 2 2 0 Mycolic acid cyclopropane synthetase DOT1 PF08123.8 gi|148642334|ref|YP_001272847.1| - 0.027 13.7 0.0 0.062 12.6 0.0 1.6 2 0 0 2 2 2 0 Histone methylation protein DOT1 RrnaAD PF00398.15 gi|148642334|ref|YP_001272847.1| - 0.094 11.7 0.1 0.19 10.6 0.0 1.5 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase tRNA-synt_1 PF00133.17 gi|148642335|ref|YP_001272848.1| - 3.7e-148 494.2 1.1 1.9e-147 491.8 0.8 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|148642335|ref|YP_001272848.1| - 3.3e-40 137.3 0.4 8.8e-40 135.9 0.3 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|148642335|ref|YP_001272848.1| - 1.8e-30 105.9 1.0 2.9e-16 59.1 0.0 3.5 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|148642335|ref|YP_001272848.1| - 5.2e-06 25.8 0.0 1.5e-05 24.4 0.0 1.7 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|148642335|ref|YP_001272848.1| - 9.9e-05 21.5 0.0 0.24 10.4 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DUF2108 PF09881.4 gi|148642336|ref|YP_001272849.1| - 0.16 11.8 2.6 0.82 9.5 0.2 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2108) B5 PF03484.10 gi|148642337|ref|YP_001272850.1| - 3.7e-19 68.3 4.3 3e-14 52.5 0.1 4.5 3 1 1 4 4 4 3 tRNA synthetase B5 domain B3_4 PF03483.12 gi|148642337|ref|YP_001272850.1| - 2.2e-12 46.7 0.1 4.3e-12 45.8 0.1 1.5 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|148642337|ref|YP_001272850.1| - 1.2e-05 24.6 0.1 2.4e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) OppC_N PF12911.2 gi|148642338|ref|YP_001272851.1| - 0.053 12.9 0.0 0.063 12.6 0.0 1.3 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C UPF0047 PF01894.12 gi|148642339|ref|YP_001272852.1| - 1.8e-37 127.7 0.2 2.1e-37 127.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AAA_14 PF13173.1 gi|148642340|ref|YP_001272853.1| - 7.4e-23 80.8 2.8 1.6e-22 79.7 0.0 2.9 3 1 0 3 3 3 1 AAA domain DUF4143 PF13635.1 gi|148642340|ref|YP_001272853.1| - 3.7e-07 30.2 0.1 7.4e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|148642340|ref|YP_001272853.1| - 8e-05 22.4 3.7 0.15 11.7 0.0 3.6 2 1 1 3 3 3 2 Archaeal ATPase NACHT PF05729.7 gi|148642340|ref|YP_001272853.1| - 0.028 14.0 0.0 0.056 13.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain UvrD-helicase PF00580.16 gi|148642340|ref|YP_001272853.1| - 0.52 9.5 0.0 0.52 9.5 0.0 3.4 3 2 1 4 4 4 0 UvrD/REP helicase N-terminal domain Beta_helix PF13229.1 gi|148642341|ref|YP_001272854.1| - 3.6e-13 49.5 65.8 1.6e-10 40.9 26.0 3.8 2 1 2 4 4 4 3 Right handed beta helix region NosD PF05048.8 gi|148642341|ref|YP_001272854.1| - 1.4e-07 30.9 44.7 1.4e-07 30.9 31.0 3.3 2 1 1 3 3 3 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|148642342|ref|YP_001272855.1| - 1.2e-28 99.8 132.0 1.7e-13 50.6 27.9 7.9 3 3 4 7 7 7 4 Right handed beta helix region DUF4399 PF14347.1 gi|148642342|ref|YP_001272855.1| - 8.2e-27 93.0 9.1 4e-07 29.9 0.6 4.6 2 2 2 4 4 4 4 Domain of unknown function (DUF4399) NosD PF05048.8 gi|148642342|ref|YP_001272855.1| - 1.2e-18 67.2 132.4 6.9e-08 31.9 8.0 7.5 3 3 3 6 6 6 4 Periplasmic copper-binding protein (NosD) Big_1 PF02369.11 gi|148642342|ref|YP_001272855.1| - 2.9e-07 30.3 21.6 0.007 16.2 0.2 5.2 2 2 2 4 4 4 3 Bacterial Ig-like domain (group 1) DUF898 PF05987.8 gi|148642343|ref|YP_001272856.1| - 0.048 12.5 5.8 0.052 12.4 4.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) YtpI PF14007.1 gi|148642343|ref|YP_001272856.1| - 0.21 11.5 8.1 0.43 10.5 5.6 1.5 1 1 0 1 1 1 0 YtpI-like protein DUF1129 PF06570.6 gi|148642343|ref|YP_001272856.1| - 0.6 9.3 5.1 0.63 9.3 3.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF3278 PF11683.3 gi|148642343|ref|YP_001272856.1| - 0.62 10.0 4.5 0.72 9.8 3.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3278) DUF2628 PF10947.3 gi|148642343|ref|YP_001272856.1| - 0.66 9.7 4.6 0.83 9.4 3.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF2207 PF09972.4 gi|148642343|ref|YP_001272856.1| - 0.72 8.3 4.8 0.73 8.3 3.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) YjgP_YjgQ PF03739.9 gi|148642343|ref|YP_001272856.1| - 0.8 8.3 7.8 0.88 8.2 5.4 1.1 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family FA_desaturase PF00487.19 gi|148642343|ref|YP_001272856.1| - 0.92 8.8 3.4 0.96 8.8 2.3 1.0 1 0 0 1 1 1 0 Fatty acid desaturase IncA PF04156.9 gi|148642343|ref|YP_001272856.1| - 2.1 7.8 4.2 2.6 7.5 2.9 1.1 1 0 0 1 1 1 0 IncA protein PsbN PF02468.10 gi|148642343|ref|YP_001272856.1| - 4.7 6.8 5.1 1 9.0 0.5 1.9 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) Rib_5-P_isom_A PF06026.9 gi|148642344|ref|YP_001272857.1| - 5.6e-67 224.3 1.8 6.8e-67 224.1 1.2 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|148642344|ref|YP_001272857.1| - 2.3e-06 27.3 0.2 0.0015 18.1 0.1 2.3 1 1 0 1 1 1 1 DeoR C terminal sensor domain UPF0179 PF03684.8 gi|148642345|ref|YP_001272858.1| - 4.4e-52 175.4 3.9 4.8e-52 175.3 2.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|148642345|ref|YP_001272858.1| - 0.0026 17.7 2.6 0.035 14.1 0.1 2.3 2 0 0 2 2 2 2 Transposase DDE domain DUF1410 PF07198.6 gi|148642345|ref|YP_001272858.1| - 0.011 16.0 0.0 0.11 12.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1410) Fe-ADH_2 PF13685.1 gi|148642346|ref|YP_001272859.1| - 2e-65 220.5 2.5 2.6e-65 220.2 1.8 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|148642346|ref|YP_001272859.1| - 2.4e-24 85.6 1.7 9.2e-24 83.7 1.2 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|148642346|ref|YP_001272859.1| - 8.9e-12 44.4 0.1 4.9e-11 42.0 0.1 2.0 1 1 0 1 1 1 1 3-dehydroquinate synthase PELOTA_1 PF15608.1 gi|148642346|ref|YP_001272859.1| - 0.11 12.2 0.1 0.38 10.5 0.0 1.9 2 0 0 2 2 2 0 PELOTA RNA binding domain tRNA-synt_2b PF00587.20 gi|148642347|ref|YP_001272860.1| - 2.9e-23 82.3 0.2 6.4e-23 81.2 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|148642347|ref|YP_001272860.1| - 9.4e-17 60.7 0.6 4.4e-16 58.5 0.0 2.5 3 1 0 3 3 3 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|148642347|ref|YP_001272860.1| - 1.4e-15 56.9 0.6 3.3e-15 55.7 0.2 1.9 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal DUF616 PF04765.8 gi|148642347|ref|YP_001272860.1| - 0.065 12.3 0.1 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF616) CofC PF01983.11 gi|148642348|ref|YP_001272861.1| - 6e-73 244.3 2.8 6.8e-73 244.1 1.9 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|148642348|ref|YP_001272861.1| - 2.1e-07 31.1 0.0 4.7e-07 30.0 0.0 1.5 1 1 1 2 2 2 1 MobA-like NTP transferase domain DUF2064 PF09837.4 gi|148642348|ref|YP_001272861.1| - 1e-05 25.1 0.0 2.7e-05 23.7 0.0 1.7 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2064) EMG1 PF03587.9 gi|148642348|ref|YP_001272861.1| - 0.034 13.4 1.3 0.13 11.5 0.7 2.0 1 1 0 1 1 1 0 EMG1/NEP1 methyltransferase Ribosomal_L7Ae PF01248.21 gi|148642348|ref|YP_001272861.1| - 0.087 12.3 1.2 2.6 7.6 0.1 2.4 1 1 1 2 2 2 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Arch_ATPase PF01637.13 gi|148642348|ref|YP_001272861.1| - 0.14 11.8 2.2 0.12 11.9 0.5 1.7 2 0 0 2 2 2 0 Archaeal ATPase Phos_pyr_kin PF08543.7 gi|148642349|ref|YP_001272862.1| - 8.8e-76 254.3 1.3 1.1e-75 254.0 0.9 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|148642349|ref|YP_001272862.1| - 6.2e-08 32.1 0.2 8.7e-08 31.6 0.2 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|148642349|ref|YP_001272862.1| - 0.0065 15.7 0.5 0.0094 15.2 0.4 1.2 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|148642349|ref|YP_001272862.1| - 0.0097 15.1 0.4 0.11 11.6 0.3 2.1 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family ATP_bind_4 PF01902.12 gi|148642349|ref|YP_001272862.1| - 0.027 13.8 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 ATP-binding region ABC_tran PF00005.22 gi|148642350|ref|YP_001272863.1| - 2.8e-33 115.1 0.0 4.8e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|148642350|ref|YP_001272863.1| - 1.3e-11 45.0 0.1 7.3e-06 26.1 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|148642350|ref|YP_001272863.1| - 4.4e-07 30.0 0.0 8.1e-07 29.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|148642350|ref|YP_001272863.1| - 5.8e-06 25.6 0.1 0.0015 17.6 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|148642350|ref|YP_001272863.1| - 3.9e-05 23.8 0.4 0.00041 20.5 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|148642350|ref|YP_001272863.1| - 0.00012 21.4 0.1 0.014 14.6 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|148642350|ref|YP_001272863.1| - 0.00026 21.1 0.0 0.00043 20.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|148642350|ref|YP_001272863.1| - 0.0011 18.9 0.0 0.0074 16.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|148642350|ref|YP_001272863.1| - 0.0012 18.6 0.4 0.041 13.5 0.0 2.2 2 0 0 2 2 2 1 Archaeal ATPase AAA_5 PF07728.9 gi|148642350|ref|YP_001272863.1| - 0.0018 17.9 0.1 0.0079 15.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|148642350|ref|YP_001272863.1| - 0.0021 17.2 0.0 0.0036 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Beach PF02138.13 gi|148642350|ref|YP_001272863.1| - 0.0024 17.3 0.1 0.0037 16.7 0.0 1.2 1 0 0 1 1 1 1 Beige/BEACH domain PduV-EutP PF10662.4 gi|148642350|ref|YP_001272863.1| - 0.0036 16.8 0.0 0.11 11.9 0.0 2.5 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|148642350|ref|YP_001272863.1| - 0.0051 16.4 0.0 0.0099 15.5 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_17 PF13207.1 gi|148642350|ref|YP_001272863.1| - 0.0057 17.4 1.4 0.023 15.5 0.9 2.2 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|148642350|ref|YP_001272863.1| - 0.0068 16.0 0.1 0.13 11.9 0.0 2.2 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|148642350|ref|YP_001272863.1| - 0.0093 15.3 0.0 0.02 14.3 0.0 1.5 2 0 0 2 2 1 1 AAA domain ABC_ATPase PF09818.4 gi|148642350|ref|YP_001272863.1| - 0.012 14.2 0.1 0.05 12.1 0.0 2.0 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_14 PF13173.1 gi|148642350|ref|YP_001272863.1| - 0.014 15.2 0.1 0.11 12.3 0.0 2.4 3 0 0 3 3 2 0 AAA domain ATP-synt_ab PF00006.20 gi|148642350|ref|YP_001272863.1| - 0.016 14.7 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.1 gi|148642350|ref|YP_001272863.1| - 0.016 15.5 0.2 0.016 15.5 0.1 1.9 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|148642350|ref|YP_001272863.1| - 0.03 14.2 0.1 0.05 13.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|148642350|ref|YP_001272863.1| - 0.03 14.6 2.2 0.054 13.8 0.2 2.3 1 1 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|148642350|ref|YP_001272863.1| - 0.043 12.6 0.0 0.15 10.8 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain AAA_19 PF13245.1 gi|148642350|ref|YP_001272863.1| - 0.048 13.4 0.1 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_29 PF13555.1 gi|148642350|ref|YP_001272863.1| - 0.052 13.0 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|148642350|ref|YP_001272863.1| - 0.076 13.5 0.0 0.32 11.5 0.0 2.0 2 0 0 2 2 2 0 Miro-like protein AAA_10 PF12846.2 gi|148642350|ref|YP_001272863.1| - 0.087 12.2 0.0 0.21 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_24 PF13479.1 gi|148642350|ref|YP_001272863.1| - 0.11 12.0 0.1 0.38 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|148642350|ref|YP_001272863.1| - 0.11 12.6 0.0 0.32 11.2 0.0 1.8 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.17 gi|148642351|ref|YP_001272864.1| - 8.4e-26 90.6 14.5 8.4e-26 90.6 10.0 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component Abi PF02517.11 gi|148642352|ref|YP_001272865.1| - 4.5e-17 61.9 6.1 4.5e-17 61.9 4.2 3.4 3 1 0 3 3 3 1 CAAX protease self-immunity Colicin PF01024.14 gi|148642352|ref|YP_001272865.1| - 0.038 13.5 0.6 0.077 12.5 0.4 1.5 1 0 0 1 1 1 0 Colicin pore forming domain DUF2254 PF10011.4 gi|148642352|ref|YP_001272865.1| - 1.9 6.8 13.2 0.018 13.5 3.8 1.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2254) Hydrolase PF00702.21 gi|148642353|ref|YP_001272866.1| - 3.9e-35 122.2 0.5 7.3e-35 121.3 0.3 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|148642353|ref|YP_001272866.1| - 1.1e-34 119.4 0.7 2.5e-34 118.3 0.5 1.6 1 0 0 1 1 1 1 E1-E2 ATPase HAD PF12710.2 gi|148642353|ref|YP_001272866.1| - 9.3e-14 52.0 0.1 2e-13 50.9 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|148642353|ref|YP_001272866.1| - 1.4e-06 28.1 4.2 2.4e-05 24.0 0.1 3.6 4 0 0 4 4 4 1 haloacid dehalogenase-like hydrolase FdhD-NarQ PF02634.10 gi|148642355|ref|YP_001272868.1| - 4.4e-62 209.6 0.0 5.9e-62 209.1 0.0 1.2 1 0 0 1 1 1 1 FdhD/NarQ family CMD PF02627.15 gi|148642356|ref|YP_001272869.1| - 1.9e-07 30.8 0.0 2.1e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family RNA_binding PF01877.12 gi|148642357|ref|YP_001272870.1| - 3.7e-23 81.7 2.8 3.7e-23 81.7 2.0 1.6 2 0 0 2 2 2 1 RNA binding MinC_N PF05209.8 gi|148642357|ref|YP_001272870.1| - 0.027 14.2 0.3 0.059 13.1 0.1 1.7 2 0 0 2 2 2 0 Septum formation inhibitor MinC, N-terminal domain Ribosomal_L15e PF00827.12 gi|148642358|ref|YP_001272871.1| - 4.6e-82 274.1 11.5 5.1e-82 274.0 7.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 DUF3795 PF12675.2 gi|148642359|ref|YP_001272872.1| - 9e-10 38.6 22.4 2.3e-09 37.2 10.6 3.0 2 1 0 2 2 2 1 Protein of unknown function (DUF3795) UPF0547 PF10571.4 gi|148642359|ref|YP_001272872.1| - 7.8e-05 22.2 1.2 7.8e-05 22.2 0.8 2.4 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|148642359|ref|YP_001272872.1| - 0.0045 16.1 0.9 0.0045 16.1 0.6 2.9 3 0 0 3 3 3 1 zinc-ribbon domain SBP_bac_5 PF00496.17 gi|148642360|ref|YP_001272873.1| - 1.1e-72 244.9 10.6 1.5e-72 244.5 7.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|148642361|ref|YP_001272874.1| - 1e-40 139.2 8.6 1e-40 139.2 5.9 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Choline_transpo PF04515.7 gi|148642361|ref|YP_001272874.1| - 0.12 11.0 0.1 0.12 11.0 0.1 2.6 3 0 0 3 3 3 0 Plasma-membrane choline transporter BPD_transp_1 PF00528.17 gi|148642362|ref|YP_001272875.1| - 8.8e-20 70.9 11.6 8.8e-20 70.9 8.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2104 PF09877.4 gi|148642362|ref|YP_001272875.1| - 1.3 8.9 9.9 0.039 13.9 1.5 2.4 3 0 0 3 3 3 0 Predicted membrane protein (DUF2104) Oxidored_q2 PF00420.19 gi|148642362|ref|YP_001272875.1| - 2.7 7.6 16.1 0.25 10.9 4.6 2.8 3 0 0 3 3 3 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABC_tran PF00005.22 gi|148642363|ref|YP_001272876.1| - 4.5e-26 91.7 0.0 6.4e-26 91.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|148642363|ref|YP_001272876.1| - 5.1e-12 45.9 0.2 1e-11 44.9 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|148642363|ref|YP_001272876.1| - 9.5e-10 38.9 0.1 1.7e-05 24.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|148642363|ref|YP_001272876.1| - 7.2e-06 26.1 0.0 1.1e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|148642363|ref|YP_001272876.1| - 0.00012 21.3 0.3 0.0003 20.0 0.2 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|148642363|ref|YP_001272876.1| - 0.00022 21.3 0.1 0.00061 19.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|148642363|ref|YP_001272876.1| - 0.0017 17.5 0.2 0.0087 15.2 0.1 2.0 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_23 PF13476.1 gi|148642363|ref|YP_001272876.1| - 0.0067 16.7 1.1 0.015 15.6 0.8 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|148642363|ref|YP_001272876.1| - 0.0072 15.8 0.1 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|148642363|ref|YP_001272876.1| - 0.025 14.0 0.0 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF87 PF01935.12 gi|148642363|ref|YP_001272876.1| - 0.029 14.2 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 Dynamin_N PF00350.18 gi|148642363|ref|YP_001272876.1| - 0.045 13.5 1.6 0.15 11.8 1.1 1.8 1 1 0 1 1 1 0 Dynamin family AAA_19 PF13245.1 gi|148642363|ref|YP_001272876.1| - 0.062 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain ATP-synt_F PF01990.12 gi|148642363|ref|YP_001272876.1| - 0.085 13.2 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 ATP synthase (F/14-kDa) subunit AAA_10 PF12846.2 gi|148642363|ref|YP_001272876.1| - 0.094 12.1 0.0 2.1 7.6 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain DUF2075 PF09848.4 gi|148642363|ref|YP_001272876.1| - 0.095 11.6 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|148642363|ref|YP_001272876.1| - 0.1 11.8 0.1 0.25 10.5 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.1 gi|148642363|ref|YP_001272876.1| - 0.11 11.9 0.0 0.29 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|148642363|ref|YP_001272876.1| - 0.12 11.6 0.1 0.26 10.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|148642363|ref|YP_001272876.1| - 0.12 11.8 0.1 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|148642363|ref|YP_001272876.1| - 0.14 12.4 0.6 3.4 7.9 0.5 2.7 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|148642364|ref|YP_001272877.1| - 1.6e-18 67.3 0.0 2.4e-18 66.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_15 PF13175.1 gi|148642364|ref|YP_001272877.1| - 0.0006 18.9 0.4 0.25 10.3 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.1 gi|148642364|ref|YP_001272877.1| - 0.00062 19.8 2.1 0.33 10.8 0.1 2.2 1 1 1 2 2 2 2 AAA domain DUF258 PF03193.11 gi|148642364|ref|YP_001272877.1| - 0.00093 18.4 0.0 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|148642364|ref|YP_001272877.1| - 0.0011 19.2 0.1 0.005 17.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|148642364|ref|YP_001272877.1| - 0.0025 17.3 0.1 0.64 9.3 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|148642364|ref|YP_001272877.1| - 0.0036 17.4 0.6 0.018 15.1 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|148642364|ref|YP_001272877.1| - 0.0092 16.7 0.0 0.012 16.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|148642364|ref|YP_001272877.1| - 0.0097 15.4 2.5 0.012 15.1 0.1 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain MobB PF03205.9 gi|148642364|ref|YP_001272877.1| - 0.028 14.1 0.2 0.082 12.6 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|148642364|ref|YP_001272877.1| - 0.049 13.9 0.9 0.094 13.0 0.2 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|148642364|ref|YP_001272877.1| - 0.065 13.4 0.1 0.22 11.6 0.0 1.9 2 0 0 2 2 2 0 RNA helicase AAA_30 PF13604.1 gi|148642364|ref|YP_001272877.1| - 0.1 12.1 0.0 0.3 10.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain CBS PF00571.23 gi|148642365|ref|YP_001272878.1| - 3e-16 58.9 0.2 3.2e-09 36.4 0.0 2.6 2 0 0 2 2 2 2 CBS domain Cache_3 PF14827.1 gi|148642365|ref|YP_001272878.1| - 0.051 13.4 0.1 11 5.9 0.0 2.7 3 0 0 3 3 3 0 Sensory domain of two-component sensor kinase Fer4 PF00037.22 gi|148642366|ref|YP_001272879.1| - 5.3e-30 101.8 52.3 6.8e-07 28.6 2.1 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642366|ref|YP_001272879.1| - 1.7e-22 79.5 42.9 4.5e-09 36.5 6.5 4.6 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642366|ref|YP_001272879.1| - 2.8e-22 78.3 42.8 1.7e-11 43.7 6.1 4.6 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642366|ref|YP_001272879.1| - 3.2e-22 78.5 43.1 5.4e-08 32.9 10.1 4.0 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642366|ref|YP_001272879.1| - 3.8e-20 71.4 45.0 8.1e-08 31.9 8.5 4.9 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148642366|ref|YP_001272879.1| - 2.5e-19 69.0 25.2 1.7e-05 24.7 6.1 4.7 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642366|ref|YP_001272879.1| - 3.4e-19 69.3 33.4 0.00056 20.6 0.1 6.0 5 1 1 6 6 6 6 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|148642366|ref|YP_001272879.1| - 3.5e-16 58.2 53.5 0.00052 19.7 2.0 6.3 6 0 0 6 6 6 5 4Fe-4S binding domain Fer4_2 PF12797.2 gi|148642366|ref|YP_001272879.1| - 4e-15 54.7 48.0 4.1e-05 23.2 1.0 6.1 6 0 0 6 6 6 5 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148642366|ref|YP_001272879.1| - 3.2e-11 43.4 42.0 0.037 14.4 1.9 6.1 5 1 1 6 6 6 5 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642366|ref|YP_001272879.1| - 3.6e-09 36.8 38.4 0.045 14.1 0.5 5.4 2 1 3 5 5 5 5 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148642366|ref|YP_001272879.1| - 7.6e-08 32.0 54.5 0.0048 17.1 1.9 6.2 6 0 0 6 6 6 5 4Fe-4S binding domain Fer4_3 PF12798.2 gi|148642366|ref|YP_001272879.1| - 9.5e-06 25.8 62.2 0.019 15.4 3.5 6.2 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_15 PF13459.1 gi|148642366|ref|YP_001272879.1| - 8.6e-05 23.0 42.4 0.0047 17.4 0.3 6.4 5 2 0 5 5 5 3 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|148642366|ref|YP_001272879.1| - 0.0011 19.2 43.6 0.24 11.8 1.3 6.5 6 1 1 7 7 7 4 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|148642366|ref|YP_001272879.1| - 0.015 15.1 29.9 0.39 10.6 8.3 4.0 2 2 1 3 3 3 0 4Fe-4S dicluster domain PfkB PF00294.19 gi|148642367|ref|YP_001272880.1| - 2.8e-48 164.5 0.1 3.5e-48 164.2 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|148642367|ref|YP_001272880.1| - 0.00092 18.4 0.0 0.0016 17.7 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase FTR_C PF02741.10 gi|148642368|ref|YP_001272881.1| - 6.7e-56 188.2 0.0 9e-56 187.8 0.0 1.2 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.13 gi|148642368|ref|YP_001272881.1| - 5e-43 146.2 0.0 7.9e-43 145.6 0.0 1.3 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase HAD PF12710.2 gi|148642369|ref|YP_001272882.1| - 1.2e-07 32.1 0.3 2.3e-07 31.2 0.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|148642369|ref|YP_001272882.1| - 0.0094 16.1 0.8 8.7 6.5 0.0 3.2 3 1 0 3 3 3 2 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|148642369|ref|YP_001272882.1| - 0.019 14.1 0.0 0.11 11.6 0.0 2.1 1 1 1 2 2 2 0 Putative Phosphatase Ndc80_HEC PF03801.8 gi|148642369|ref|YP_001272882.1| - 0.056 12.8 0.3 0.12 11.8 0.2 1.5 1 0 0 1 1 1 0 HEC/Ndc80p family Hydrolase_3 PF08282.7 gi|148642369|ref|YP_001272882.1| - 0.91 9.0 14.1 0.018 14.6 2.9 2.4 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Fer4 PF00037.22 gi|148642370|ref|YP_001272883.1| - 1.5e-50 166.8 98.3 1.2e-08 34.1 2.3 11.0 11 0 0 11 11 11 9 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642370|ref|YP_001272883.1| - 3.4e-41 139.4 80.4 9.2e-10 38.7 6.0 6.4 4 1 3 7 7 7 7 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642370|ref|YP_001272883.1| - 1.8e-40 136.5 74.9 2.5e-09 36.8 6.6 6.7 5 1 1 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148642370|ref|YP_001272883.1| - 5.8e-39 130.3 97.4 1.3e-06 27.9 2.7 10.2 10 0 0 10 10 10 9 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148642370|ref|YP_001272883.1| - 9.4e-36 121.3 89.8 2.6e-07 30.3 9.0 8.1 4 3 4 8 8 8 8 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642370|ref|YP_001272883.1| - 4.9e-33 113.1 90.8 1.3e-07 31.7 7.6 7.1 4 4 5 9 9 9 9 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642370|ref|YP_001272883.1| - 1.4e-28 99.3 75.9 0.00045 20.8 1.0 10.0 9 1 1 10 10 10 10 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|148642370|ref|YP_001272883.1| - 1.8e-27 93.5 96.2 0.00015 21.4 2.9 10.3 10 0 0 10 10 10 10 4Fe-4S binding domain Fer4_8 PF13183.1 gi|148642370|ref|YP_001272883.1| - 5.3e-22 77.6 78.3 2e-05 24.5 5.3 7.8 5 3 3 8 8 8 7 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|148642370|ref|YP_001272883.1| - 1.1e-18 66.8 60.9 1.1e-08 34.8 4.0 5.3 2 2 1 5 5 5 5 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642370|ref|YP_001272883.1| - 4.3e-15 55.8 77.1 0.013 15.8 5.7 9.2 6 3 3 9 9 9 7 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148642370|ref|YP_001272883.1| - 5.6e-15 54.3 104.0 0.0017 18.5 2.0 10.3 10 0 0 10 10 10 7 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148642370|ref|YP_001272883.1| - 6.4e-13 48.9 77.3 0.042 14.2 0.0 10.1 9 1 1 10 10 10 8 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|148642370|ref|YP_001272883.1| - 2.8e-07 30.9 82.2 0.15 12.6 1.4 10.4 7 3 2 10 10 10 6 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|148642370|ref|YP_001272883.1| - 7e-07 29.3 119.2 0.052 14.1 2.9 10.3 10 0 0 10 10 10 7 4Fe-4S binding domain Fer4_13 PF13370.1 gi|148642370|ref|YP_001272883.1| - 0.17 12.2 95.7 0.7 10.3 8.2 10.4 8 3 1 9 9 9 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|148642371|ref|YP_001272884.1| - 7.4e-34 114.0 56.5 7.3e-07 28.5 2.4 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642371|ref|YP_001272884.1| - 1.1e-26 92.9 47.9 7.4e-10 39.0 7.9 3.4 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642371|ref|YP_001272884.1| - 3.8e-26 90.6 82.6 1.5e-09 37.5 7.9 4.7 3 3 3 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642371|ref|YP_001272884.1| - 5.2e-23 81.0 50.1 1.9e-09 37.6 8.2 4.2 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148642371|ref|YP_001272884.1| - 1.2e-22 78.7 55.9 2.5e-05 23.9 2.3 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_21 PF14697.1 gi|148642371|ref|YP_001272884.1| - 7.2e-22 77.0 47.0 2e-08 33.9 7.2 4.1 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642371|ref|YP_001272884.1| - 2.5e-21 74.2 55.1 0.00013 21.6 2.4 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_8 PF13183.1 gi|148642371|ref|YP_001272884.1| - 6.3e-21 74.1 39.3 6.6e-07 29.2 7.0 4.9 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642371|ref|YP_001272884.1| - 5.3e-20 71.9 45.1 0.00016 22.3 0.9 6.1 4 2 2 6 6 6 6 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|148642371|ref|YP_001272884.1| - 1.1e-12 48.1 47.1 0.00086 19.6 6.6 6.0 2 2 6 8 8 8 7 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148642371|ref|YP_001272884.1| - 1.4e-12 46.8 58.2 0.0012 19.0 1.3 6.3 6 0 0 6 6 6 5 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148642371|ref|YP_001272884.1| - 3.2e-11 43.4 44.3 0.0039 17.5 0.2 6.3 5 1 1 6 6 6 5 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|148642371|ref|YP_001272884.1| - 3.1e-10 39.8 27.8 4.1e-05 23.3 3.1 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|148642371|ref|YP_001272884.1| - 2.9e-07 30.5 65.6 0.079 13.5 3.8 6.3 6 0 0 6 6 6 5 4Fe-4S binding domain Fer4_15 PF13459.1 gi|148642371|ref|YP_001272884.1| - 2e-05 25.0 43.9 0.032 14.7 0.4 6.7 5 2 0 5 5 4 3 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|148642371|ref|YP_001272884.1| - 4.6e-05 23.7 45.8 0.25 11.7 1.8 6.8 6 1 0 6 6 6 4 4Fe-4S single cluster domain Complex1_49kDa PF00346.14 gi|148642372|ref|YP_001272885.1| - 4.1e-28 98.1 0.0 5.7e-25 87.8 0.0 2.3 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|148642372|ref|YP_001272885.1| - 4.4e-12 45.5 1.0 6.2e-09 35.1 0.0 3.4 2 2 1 3 3 3 2 Nickel-dependent hydrogenase Oxidored_q6 PF01058.17 gi|148642373|ref|YP_001272886.1| - 1.9e-26 92.1 0.0 2.8e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit HDV_ag PF01517.13 gi|148642373|ref|YP_001272886.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Hepatitis delta virus delta antigen DUF1959 PF09218.5 gi|148642374|ref|YP_001272887.1| - 6.6e-51 170.9 0.5 7.5e-51 170.8 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1959) DUF4351 PF14261.1 gi|148642374|ref|YP_001272887.1| - 0.017 14.9 1.6 0.067 13.0 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4351) DUF2104 PF09877.4 gi|148642375|ref|YP_001272888.1| - 3.9e-37 126.2 10.6 4.3e-37 126.0 7.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2104) Cation_efflux PF01545.16 gi|148642375|ref|YP_001272888.1| - 1.4 7.9 6.1 3.5 6.6 4.2 1.6 1 1 0 1 1 1 0 Cation efflux family VIT1 PF01988.14 gi|148642375|ref|YP_001272888.1| - 4.5 6.6 9.5 14 5.0 6.6 1.7 1 1 0 1 1 1 0 VIT family DUF4282 PF14110.1 gi|148642375|ref|YP_001272888.1| - 7.3 6.8 13.6 7.4 6.8 2.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4282) Lung_7-TM_R PF06814.8 gi|148642376|ref|YP_001272889.1| - 0.05 12.5 5.9 0.059 12.3 4.1 1.0 1 0 0 1 1 1 0 Lung seven transmembrane receptor Kua-UEV1_localn PF10520.4 gi|148642376|ref|YP_001272889.1| - 0.057 13.0 0.9 0.06 12.9 0.6 1.1 1 0 0 1 1 1 0 Kua-ubiquitin conjugating enzyme hybrid localisation domain Cytochrome-c551 PF10643.4 gi|148642376|ref|YP_001272889.1| - 0.14 11.4 4.1 0.15 11.3 2.9 1.2 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 7TMR-DISM_7TM PF07695.6 gi|148642376|ref|YP_001272889.1| - 0.22 11.1 12.3 0.28 10.8 8.5 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling O-antigen_lig PF13425.1 gi|148642376|ref|YP_001272889.1| - 0.27 11.2 11.3 0.35 10.8 7.8 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein ER_lumen_recept PF00810.13 gi|148642376|ref|YP_001272889.1| - 0.66 10.4 6.7 0.83 10.1 4.7 1.1 1 0 0 1 1 1 0 ER lumen protein retaining receptor DUF3671 PF12420.3 gi|148642376|ref|YP_001272889.1| - 1.2 9.1 12.6 2.1 8.3 8.8 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF1700 PF08006.6 gi|148642376|ref|YP_001272889.1| - 3.7 6.8 11.6 4.3 6.5 8.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) zf-DHHC PF01529.15 gi|148642376|ref|YP_001272889.1| - 4.6 6.6 10.8 5.5 6.3 7.5 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase NADHdh PF00146.16 gi|148642377|ref|YP_001272890.1| - 4.9e-19 68.5 14.5 6.3e-19 68.1 10.1 1.1 1 0 0 1 1 1 1 NADH dehydrogenase 2TM PF13239.1 gi|148642378|ref|YP_001272891.1| - 0.0094 15.9 0.2 0.011 15.7 0.2 1.1 1 0 0 1 1 1 1 2TM domain IncA PF04156.9 gi|148642378|ref|YP_001272891.1| - 0.017 14.7 0.1 0.018 14.6 0.1 1.1 1 0 0 1 1 1 0 IncA protein DUF3185 PF11381.3 gi|148642378|ref|YP_001272891.1| - 0.026 14.3 0.0 1.7 8.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF2207 PF09972.4 gi|148642378|ref|YP_001272891.1| - 0.032 12.8 0.6 0.034 12.7 0.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4383 PF14325.1 gi|148642378|ref|YP_001272891.1| - 0.057 13.4 1.8 0.065 13.2 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4383) PigN PF04987.9 gi|148642378|ref|YP_001272891.1| - 0.062 11.9 0.1 0.062 11.9 0.0 1.0 1 0 0 1 1 1 0 Phosphatidylinositolglycan class N (PIG-N) DUF2244 PF10003.4 gi|148642378|ref|YP_001272891.1| - 0.095 12.0 0.6 0.11 11.8 0.4 1.0 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF788 PF05620.6 gi|148642378|ref|YP_001272891.1| - 0.11 12.4 0.1 0.13 12.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF788) NADHdeh_related PF10125.4 gi|148642379|ref|YP_001272892.1| - 7.5e-88 293.3 13.6 8.4e-88 293.1 9.4 1.0 1 0 0 1 1 1 1 NADH dehydrogenase I, subunit N related protein PRA1 PF03208.14 gi|148642379|ref|YP_001272892.1| - 0.0015 17.9 1.5 0.0015 17.9 1.0 2.5 1 1 1 2 2 2 1 PRA1 family protein DUF2105 PF09878.4 gi|148642380|ref|YP_001272893.1| - 1.5e-86 289.3 13.9 1.7e-86 289.1 9.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2105) DUF2106 PF09879.4 gi|148642381|ref|YP_001272894.1| - 7.7e-72 239.6 0.3 9e-72 239.4 0.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) DUF2107 PF09880.4 gi|148642382|ref|YP_001272895.1| - 6.1e-36 122.1 5.6 6.9e-36 121.9 3.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) Herpes_UL49_5 PF05702.6 gi|148642382|ref|YP_001272895.1| - 0.97 9.3 8.4 2.8 7.8 1.2 2.1 1 1 1 2 2 2 0 Herpesvirus UL49.5 envelope/tegument protein Antimicrobial10 PF08105.6 gi|148642382|ref|YP_001272895.1| - 1.7 8.3 3.6 3 7.5 0.1 2.2 2 0 0 2 2 2 0 Metchnikowin family DUF2108 PF09881.4 gi|148642383|ref|YP_001272896.1| - 2.5e-27 94.4 12.9 2.9e-27 94.3 9.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2108) DUF4040 PF13244.1 gi|148642383|ref|YP_001272896.1| - 0.0014 18.5 3.7 0.0019 18.1 2.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) Oxidored_q2 PF00420.19 gi|148642383|ref|YP_001272896.1| - 0.0083 15.7 10.6 0.011 15.3 7.4 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PhaG_MnhG_YufB PF03334.9 gi|148642383|ref|YP_001272896.1| - 0.24 11.4 6.0 0.34 10.9 4.2 1.3 1 1 0 1 1 1 0 Na+/H+ antiporter subunit DUF2107 PF09880.4 gi|148642383|ref|YP_001272896.1| - 0.35 10.7 7.5 0.41 10.5 5.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2107) DUF2109 PF09882.4 gi|148642384|ref|YP_001272897.1| - 7.4e-34 115.5 6.1 8.3e-34 115.3 4.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2109) Caps_synth_CapC PF14102.1 gi|148642384|ref|YP_001272897.1| - 0.47 10.5 3.9 0.24 11.5 1.1 1.6 1 1 1 2 2 2 0 Capsule biosynthesis CapC DUF1774 PF08611.5 gi|148642384|ref|YP_001272897.1| - 2.3 8.4 5.6 4.1 7.6 3.9 1.5 1 1 0 1 1 1 0 Fungal protein of unknown function (DUF1774) ABC2_membrane_3 PF12698.2 gi|148642385|ref|YP_001272898.1| - 3.5 6.5 9.5 4.7 6.1 6.6 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein FeoB_C PF07664.7 gi|148642386|ref|YP_001272899.1| - 0.1 12.0 0.4 0.1 12.0 0.3 2.7 2 1 1 3 3 3 0 Ferrous iron transport protein B C terminus DUF2929 PF11151.3 gi|148642386|ref|YP_001272899.1| - 0.58 10.2 7.9 1.9 8.6 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2929) DUF318 PF03773.8 gi|148642386|ref|YP_001272899.1| - 2.9 6.8 11.8 0.19 10.6 1.3 2.0 1 1 0 2 2 2 0 Predicted permease Epimerase PF01370.16 gi|148642387|ref|YP_001272900.1| - 5.5e-60 202.7 0.0 6.9e-60 202.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|148642387|ref|YP_001272900.1| - 2.9e-23 81.9 0.1 3.9e-23 81.5 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|148642387|ref|YP_001272900.1| - 8.3e-20 70.8 0.2 7.3e-19 67.7 0.1 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|148642387|ref|YP_001272900.1| - 2.8e-13 49.3 0.2 3.4e-10 39.2 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|148642387|ref|YP_001272900.1| - 2e-12 47.4 0.0 2.6e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|148642387|ref|YP_001272900.1| - 1.7e-08 33.6 0.0 2.3e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|148642387|ref|YP_001272900.1| - 2.2e-05 23.8 0.2 4.9e-05 22.6 0.1 1.6 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|148642387|ref|YP_001272900.1| - 0.00013 21.9 1.8 0.002 18.0 0.1 2.5 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|148642387|ref|YP_001272900.1| - 0.0087 15.7 0.2 0.16 11.5 0.0 2.2 1 1 0 2 2 2 1 KR domain TrkA_N PF02254.13 gi|148642387|ref|YP_001272900.1| - 0.012 15.6 2.8 0.023 14.6 0.8 2.3 2 1 0 2 2 2 0 TrkA-N domain SpoVAD PF07451.6 gi|148642387|ref|YP_001272900.1| - 0.02 13.3 0.1 0.043 12.2 0.1 1.5 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) Epimerase_Csub PF13950.1 gi|148642387|ref|YP_001272900.1| - 0.036 14.0 0.0 0.074 13.0 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit UDPG_MGDP_dh_N PF03721.9 gi|148642387|ref|YP_001272900.1| - 0.037 13.4 0.1 0.061 12.7 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Cupin_2 PF07883.6 gi|148642389|ref|YP_001272902.1| - 9.5e-16 57.0 0.0 1.6e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.2 gi|148642389|ref|YP_001272902.1| - 5.7e-10 39.0 0.0 1e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|148642389|ref|YP_001272902.1| - 1.1e-09 38.0 0.0 1.6e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|148642389|ref|YP_001272902.1| - 3e-06 27.3 0.0 4.2e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.14 gi|148642389|ref|YP_001272902.1| - 0.0012 18.5 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|148642389|ref|YP_001272902.1| - 0.0085 15.4 0.0 0.018 14.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DNA_pol3_beta PF00712.14 gi|148642389|ref|YP_001272902.1| - 0.018 14.8 0.1 0.041 13.7 0.1 1.7 1 0 0 1 1 1 0 DNA polymerase III beta subunit, N-terminal domain MannoseP_isomer PF01050.13 gi|148642389|ref|YP_001272902.1| - 0.037 13.6 0.0 0.41 10.2 0.0 2.0 2 0 0 2 2 2 0 Mannose-6-phosphate isomerase AMP-binding PF00501.23 gi|148642390|ref|YP_001272903.1| - 3.5e-82 276.0 0.0 4.2e-82 275.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|148642390|ref|YP_001272903.1| - 1.1e-14 55.1 0.1 2.4e-14 54.0 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.2 gi|148642391|ref|YP_001272904.1| - 4.4e-10 39.7 7.0 5.8e-10 39.3 4.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642391|ref|YP_001272904.1| - 1.7e-08 34.1 4.2 2.1e-08 33.8 2.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148642391|ref|YP_001272904.1| - 5.7e-07 29.1 10.5 0.002 17.9 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|148642391|ref|YP_001272904.1| - 1.1e-05 24.8 12.0 0.00012 21.5 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148642391|ref|YP_001272904.1| - 1.1e-05 25.1 8.5 0.00066 19.4 7.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642391|ref|YP_001272904.1| - 1.5e-05 24.6 10.1 0.0027 17.5 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148642391|ref|YP_001272904.1| - 3.5e-05 23.9 9.5 8.6e-05 22.7 6.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148642391|ref|YP_001272904.1| - 0.0003 20.8 11.3 0.042 14.1 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|148642391|ref|YP_001272904.1| - 0.00072 20.0 3.8 0.13 12.7 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|148642391|ref|YP_001272904.1| - 0.0066 17.1 8.6 0.25 12.1 6.4 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|148642391|ref|YP_001272904.1| - 0.0075 16.2 9.4 0.34 10.9 0.8 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642391|ref|YP_001272904.1| - 0.02 15.2 11.9 0.95 9.8 2.2 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148642391|ref|YP_001272904.1| - 0.078 13.4 13.1 0.73 10.2 0.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|148642391|ref|YP_001272904.1| - 0.28 11.8 15.9 0.63 10.7 3.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|148642391|ref|YP_001272904.1| - 0.49 10.8 9.0 4.1 7.8 1.6 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain TNFR_c6 PF00020.13 gi|148642391|ref|YP_001272904.1| - 5.7 7.0 9.3 6.2 6.9 0.9 2.2 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region POR_N PF01855.14 gi|148642392|ref|YP_001272905.1| - 5.3e-62 209.3 0.0 7.1e-62 208.9 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|148642392|ref|YP_001272905.1| - 4.7e-05 23.3 0.0 9.5e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain POR PF01558.13 gi|148642393|ref|YP_001272906.1| - 8.1e-43 146.3 0.0 1.3e-42 145.6 0.0 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|148642393|ref|YP_001272906.1| - 7.3e-23 80.8 0.6 1.3e-22 80.0 0.1 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Asparaginase PF00710.15 gi|148642394|ref|YP_001272907.1| - 2.6e-96 322.1 0.1 3.2e-96 321.9 0.1 1.0 1 0 0 1 1 1 1 Asparaginase Imm37 PF15598.1 gi|148642394|ref|YP_001272907.1| - 0.15 11.9 0.0 0.68 9.7 0.0 2.1 2 0 0 2 2 2 0 Immunity protein 37 GatB_N PF02934.10 gi|148642395|ref|YP_001272908.1| - 1.2e-75 254.0 2.0 4.3e-75 252.2 1.4 1.8 1 1 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|148642395|ref|YP_001272908.1| - 2.3e-22 79.3 1.9 2.3e-22 79.3 1.3 2.6 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|148642395|ref|YP_001272908.1| - 1e-15 57.6 0.9 9.1e-15 54.5 0.0 2.8 3 0 0 3 3 3 1 GAD domain YqeY PF09424.5 gi|148642395|ref|YP_001272908.1| - 1.4e-07 31.4 1.4 3.8e-07 30.0 1.0 1.8 1 0 0 1 1 1 1 Yqey-like protein PolyA_pol_RNAbd PF12627.2 gi|148642395|ref|YP_001272908.1| - 0.0007 19.1 0.3 0.0067 15.9 0.1 2.4 2 0 0 2 2 2 1 Probable RNA and SrmB- binding site of polymerase A Chlam_PMP PF02415.12 gi|148642397|ref|YP_001272910.1| - 0.0016 18.6 5.4 0.018 15.2 0.2 2.6 2 1 0 2 2 2 2 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat DUF2970 PF11174.3 gi|148642399|ref|YP_001272912.1| - 0.01 15.3 0.2 0.012 15.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2970) EVI2A PF05399.6 gi|148642399|ref|YP_001272912.1| - 0.088 12.0 0.0 0.1 11.8 0.0 1.0 1 0 0 1 1 1 0 Ectropic viral integration site 2A protein (EVI2A) DUF2500 PF10694.4 gi|148642399|ref|YP_001272912.1| - 0.094 12.7 0.8 0.15 12.0 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2500) DUF3753 PF12575.3 gi|148642399|ref|YP_001272912.1| - 0.21 11.4 2.5 0.22 11.3 1.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3753) P12 PF12669.2 gi|148642399|ref|YP_001272912.1| - 0.22 11.7 1.1 0.35 11.1 0.8 1.3 1 0 0 1 1 1 0 Virus attachment protein p12 family Rifin_STEVOR PF02009.11 gi|148642399|ref|YP_001272912.1| - 0.66 9.5 3.6 0.82 9.2 2.5 1.3 1 1 0 1 1 1 0 Rifin/stevor family Vpu PF00558.14 gi|148642399|ref|YP_001272912.1| - 3 7.4 7.2 2.8 7.5 0.8 2.0 1 1 1 2 2 2 0 Vpu protein Pyr_redox_2 PF07992.9 gi|148642400|ref|YP_001272913.1| - 2.1e-28 99.5 0.0 3.9e-28 98.7 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|148642400|ref|YP_001272913.1| - 7.3e-18 64.7 12.0 7.2e-17 61.5 0.2 3.5 3 1 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|148642400|ref|YP_001272913.1| - 1.6e-15 57.6 2.3 1.1e-09 38.6 0.0 3.0 1 1 2 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|148642400|ref|YP_001272913.1| - 5.9e-08 32.0 3.6 3.5e-06 26.2 0.5 2.9 3 0 0 3 3 3 1 Thi4 family HI0933_like PF03486.9 gi|148642400|ref|YP_001272913.1| - 2.3e-07 29.6 9.4 0.00065 18.2 0.6 4.0 3 1 1 4 4 4 2 HI0933-like protein FAD_oxidored PF12831.2 gi|148642400|ref|YP_001272913.1| - 3.1e-07 29.8 1.8 8.9e-05 21.7 0.4 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.19 gi|148642400|ref|YP_001272913.1| - 4.8e-07 28.9 5.1 0.022 13.6 0.0 3.6 3 1 1 4 4 4 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|148642400|ref|YP_001272913.1| - 3.7e-06 26.0 12.8 0.088 11.6 1.0 3.9 2 1 0 3 3 3 3 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|148642400|ref|YP_001272913.1| - 6.4e-06 25.2 8.5 0.0003 19.7 1.9 3.6 2 1 2 4 4 4 1 FAD binding domain FAD_binding_3 PF01494.14 gi|148642400|ref|YP_001272913.1| - 8.4e-06 25.0 0.7 0.0064 15.5 0.4 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|148642400|ref|YP_001272913.1| - 1e-05 25.4 0.9 0.0027 17.7 0.8 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|148642400|ref|YP_001272913.1| - 0.00028 19.9 1.4 0.46 9.3 0.1 3.2 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|148642400|ref|YP_001272913.1| - 0.0016 18.6 0.3 0.013 15.7 0.0 2.2 2 1 0 2 2 2 1 Putative NAD(P)-binding Orthopox_B11R PF07033.6 gi|148642400|ref|YP_001272913.1| - 0.01 15.2 0.8 0.01 15.2 0.6 2.3 2 0 0 2 2 2 0 Orthopoxvirus B11R protein Lycopene_cycl PF05834.7 gi|148642400|ref|YP_001272913.1| - 0.018 13.9 0.2 7.1 5.4 0.0 3.1 3 0 0 3 3 3 0 Lycopene cyclase protein GCV_H PF01597.14 gi|148642400|ref|YP_001272913.1| - 0.021 14.5 0.1 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 Glycine cleavage H-protein Mqo PF06039.10 gi|148642400|ref|YP_001272913.1| - 0.027 12.6 0.8 0.049 11.8 0.1 1.8 2 0 0 2 2 2 0 Malate:quinone oxidoreductase (Mqo) AlaDh_PNT_C PF01262.16 gi|148642400|ref|YP_001272913.1| - 0.12 11.9 0.4 0.52 9.8 0.0 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|148642400|ref|YP_001272913.1| - 0.21 11.6 0.1 0.21 11.6 0.0 2.3 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.1 gi|148642400|ref|YP_001272913.1| - 0.32 10.7 1.8 5.6 6.7 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding DDE_Tnp_IS66 PF03050.9 gi|148642402|ref|YP_001272915.1| - 4.5e-08 32.6 3.0 2.4e-07 30.2 2.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family Zn_Tnp_IS1595 PF12760.2 gi|148642402|ref|YP_001272915.1| - 0.00061 19.5 2.0 0.0015 18.2 1.4 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148642402|ref|YP_001272915.1| - 0.03 13.6 1.7 0.28 10.5 1.1 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|148642402|ref|YP_001272915.1| - 0.063 13.2 3.8 3.5 7.6 1.0 2.8 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|148642402|ref|YP_001272915.1| - 0.098 12.9 0.2 0.31 11.3 0.1 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|148642402|ref|YP_001272915.1| - 0.33 10.6 4.6 6 6.5 3.2 2.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|148642402|ref|YP_001272915.1| - 0.68 10.0 9.3 0.53 10.3 0.4 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TetR_C_8 PF14278.1 gi|148642402|ref|YP_001272915.1| - 1.3 9.4 6.9 0.75 10.2 0.5 3.6 2 1 0 3 3 3 0 Transcriptional regulator C-terminal region Transposase_mut PF00872.13 gi|148642402|ref|YP_001272915.1| - 4.1 5.8 7.2 25 3.2 2.6 2.9 2 1 1 3 3 3 0 Transposase, Mutator family GATase PF00117.23 gi|148642403|ref|YP_001272916.1| - 1.8e-39 135.2 0.2 2e-39 135.0 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|148642403|ref|YP_001272916.1| - 2e-14 53.5 0.0 3.3e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 DUF447 PF04289.7 gi|148642403|ref|YP_001272916.1| - 0.081 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF447) GMP_synt_C PF00958.17 gi|148642405|ref|YP_001272918.1| - 2.6e-31 107.1 0.2 5.1e-31 106.2 0.1 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|148642405|ref|YP_001272918.1| - 2.7e-11 42.8 0.1 6e-07 28.6 0.0 2.3 2 0 0 2 2 2 2 NAD synthase Arginosuc_synth PF00764.14 gi|148642405|ref|YP_001272918.1| - 2.6e-05 23.4 0.1 3.9e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 Arginosuccinate synthase ATP_bind_3 PF01171.15 gi|148642405|ref|YP_001272918.1| - 0.00031 20.3 0.0 0.00046 19.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|148642405|ref|YP_001272918.1| - 0.0006 19.1 0.0 0.0023 17.2 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|148642405|ref|YP_001272918.1| - 0.00089 17.9 0.0 0.0028 16.2 0.0 1.7 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|148642405|ref|YP_001272918.1| - 0.0011 18.5 0.0 0.0019 17.7 0.0 1.4 2 0 0 2 2 2 1 Asparagine synthase ThiI PF02568.9 gi|148642405|ref|YP_001272918.1| - 0.019 14.3 0.0 0.049 13.0 0.0 1.7 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|148642405|ref|YP_001272918.1| - 0.053 13.3 0.0 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family DUF650 PF04894.7 gi|148642406|ref|YP_001272919.1| - 1.1e-83 280.8 0.1 1.6e-83 280.3 0.1 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|148642406|ref|YP_001272919.1| - 9.1e-33 112.1 0.1 1.9e-32 111.1 0.1 1.5 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) DegT_DnrJ_EryC1 PF01041.12 gi|148642407|ref|YP_001272920.1| - 9e-12 44.6 0.0 1.4e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family ADH_zinc_N PF00107.21 gi|148642407|ref|YP_001272920.1| - 0.12 11.9 0.1 1.9 8.0 0.0 2.5 3 0 0 3 3 3 0 Zinc-binding dehydrogenase CGI-121 PF08617.5 gi|148642408|ref|YP_001272921.1| - 6.5e-13 48.6 0.3 8e-13 48.3 0.2 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 zf-AD PF07776.10 gi|148642408|ref|YP_001272921.1| - 0.11 12.4 0.7 12 5.9 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger associated domain (zf-AD) CGI-121 PF08617.5 gi|148642409|ref|YP_001272922.1| - 0.0056 16.3 0.1 0.0062 16.2 0.1 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 HMGL-like PF00682.14 gi|148642410|ref|YP_001272923.1| - 1.4e-66 224.5 0.0 2.3e-66 223.8 0.0 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|148642410|ref|YP_001272923.1| - 5.8e-34 116.7 1.4 1.2e-33 115.7 1.0 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain UPF0020 PF01170.13 gi|148642412|ref|YP_001272925.1| - 1.7e-40 138.5 0.0 2.4e-40 138.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|148642412|ref|YP_001272925.1| - 9.4e-10 38.5 0.0 1.8e-09 37.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|148642412|ref|YP_001272925.1| - 1.8e-09 37.4 0.0 1.9e-06 27.5 0.0 2.3 2 1 0 2 2 2 2 DNA methylase THUMP PF02926.12 gi|148642412|ref|YP_001272925.1| - 5.2e-09 36.1 0.9 8.9e-09 35.3 0.6 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.1 gi|148642412|ref|YP_001272925.1| - 2.3e-06 27.2 0.0 5.1e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|148642412|ref|YP_001272925.1| - 3.1e-05 23.2 0.0 0.0008 18.5 0.0 2.3 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_15 PF09445.5 gi|148642412|ref|YP_001272925.1| - 0.00077 19.0 0.1 0.0018 17.8 0.0 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|148642412|ref|YP_001272925.1| - 0.0076 15.6 0.0 0.017 14.5 0.0 1.5 1 1 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|148642412|ref|YP_001272925.1| - 0.011 15.1 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain MethyltransfD12 PF02086.10 gi|148642412|ref|YP_001272925.1| - 0.12 11.7 2.3 1.4 8.3 0.0 2.7 2 1 1 3 3 3 0 D12 class N6 adenine-specific DNA methyltransferase bPH_2 PF03703.9 gi|148642413|ref|YP_001272926.1| - 2.5e-06 27.3 0.0 3.9e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain AAA PF00004.24 gi|148642414|ref|YP_001272927.1| - 4.3e-45 153.1 1.3 7.8e-45 152.3 0.0 2.1 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|148642414|ref|YP_001272927.1| - 2.8e-08 33.8 0.0 7.4e-08 32.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|148642414|ref|YP_001272927.1| - 1.9e-06 28.0 0.2 0.00012 22.2 0.1 2.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|148642414|ref|YP_001272927.1| - 2.1e-06 27.8 0.1 9.5e-06 25.7 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|148642414|ref|YP_001272927.1| - 5.4e-06 26.1 0.3 6.2e-05 22.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|148642414|ref|YP_001272927.1| - 8.8e-06 24.9 0.0 2.2e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|148642414|ref|YP_001272927.1| - 1.5e-05 25.7 1.0 5.2e-05 24.0 0.1 2.4 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|148642414|ref|YP_001272927.1| - 1.7e-05 23.8 0.0 3.2e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Zeta_toxin PF06414.7 gi|148642414|ref|YP_001272927.1| - 0.00027 20.1 0.5 0.0017 17.4 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin AAA_28 PF13521.1 gi|148642414|ref|YP_001272927.1| - 0.00037 20.4 0.4 0.0007 19.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain TIP49 PF06068.8 gi|148642414|ref|YP_001272927.1| - 0.00048 18.9 0.0 0.0012 17.7 0.0 1.6 1 0 0 1 1 1 1 TIP49 C-terminus AAA_14 PF13173.1 gi|148642414|ref|YP_001272927.1| - 0.0008 19.3 0.0 0.0023 17.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|148642414|ref|YP_001272927.1| - 0.0012 18.2 0.0 0.0032 16.8 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|148642414|ref|YP_001272927.1| - 0.0013 18.3 0.9 0.0045 16.7 0.6 1.9 1 1 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|148642414|ref|YP_001272927.1| - 0.0014 18.9 2.2 0.0031 17.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|148642414|ref|YP_001272927.1| - 0.0014 18.7 0.0 0.0042 17.2 0.0 1.8 1 0 0 1 1 1 1 RNA helicase DUF2046 PF09755.4 gi|148642414|ref|YP_001272927.1| - 0.0016 17.3 3.3 0.0026 16.6 2.3 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein H4 (DUF2046) AAA_11 PF13086.1 gi|148642414|ref|YP_001272927.1| - 0.0022 17.6 1.0 0.2 11.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|148642414|ref|YP_001272927.1| - 0.0036 17.0 4.7 0.0043 16.7 0.1 2.6 2 1 0 2 2 2 1 Archaeal ATPase AAA_33 PF13671.1 gi|148642414|ref|YP_001272927.1| - 0.0051 16.6 0.1 0.014 15.2 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|148642414|ref|YP_001272927.1| - 0.0055 16.1 3.5 0.23 10.8 0.1 2.8 2 1 0 3 3 3 1 AAA domain Mg_chelatase PF01078.16 gi|148642414|ref|YP_001272927.1| - 0.0059 15.7 0.0 0.013 14.6 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|148642414|ref|YP_001272927.1| - 0.0086 15.6 0.1 0.022 14.3 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|148642414|ref|YP_001272927.1| - 0.013 15.0 0.0 0.082 12.5 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|148642414|ref|YP_001272927.1| - 0.016 14.8 0.7 0.39 10.3 0.0 2.8 3 1 1 4 4 3 0 NACHT domain NB-ARC PF00931.17 gi|148642414|ref|YP_001272927.1| - 0.022 13.6 0.0 0.047 12.5 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain KaiC PF06745.8 gi|148642414|ref|YP_001272927.1| - 0.037 13.1 6.0 0.24 10.5 0.0 2.8 2 1 1 3 3 3 0 KaiC PhoH PF02562.11 gi|148642414|ref|YP_001272927.1| - 0.052 12.7 0.3 0.14 11.4 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein Parvo_NS1 PF01057.12 gi|148642414|ref|YP_001272927.1| - 0.054 12.3 0.1 0.13 11.1 0.0 1.6 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.21 gi|148642414|ref|YP_001272927.1| - 0.054 12.9 0.0 0.16 11.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain T2SE PF00437.15 gi|148642414|ref|YP_001272927.1| - 0.06 12.2 0.1 0.2 10.5 0.1 1.8 1 1 0 1 1 1 0 Type II/IV secretion system protein Torsin PF06309.6 gi|148642414|ref|YP_001272927.1| - 0.072 12.9 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Torsin ABC_tran PF00005.22 gi|148642414|ref|YP_001272927.1| - 0.086 13.1 0.1 0.84 9.9 0.0 2.4 2 0 0 2 2 2 0 ABC transporter Sigma54_activ_2 PF14532.1 gi|148642414|ref|YP_001272927.1| - 0.1 12.6 0.0 0.27 11.2 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain ACCA PF03255.9 gi|148642414|ref|YP_001272927.1| - 0.32 10.5 2.5 0.83 9.2 1.7 1.7 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Atg14 PF10186.4 gi|148642414|ref|YP_001272927.1| - 0.42 9.5 4.4 0.75 8.6 3.1 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 IncA PF04156.9 gi|148642414|ref|YP_001272927.1| - 1.2 8.6 4.8 2.5 7.6 3.3 1.5 1 0 0 1 1 1 0 IncA protein DUF904 PF06005.7 gi|148642414|ref|YP_001272927.1| - 2 8.7 17.4 0.61 10.4 7.9 3.1 3 1 0 3 3 2 0 Protein of unknown function (DUF904) NTPase_1 PF03266.10 gi|148642414|ref|YP_001272927.1| - 2.1 8.0 6.8 1.7 8.2 0.0 3.3 3 1 0 3 3 3 0 NTPase HTH_3 PF01381.17 gi|148642415|ref|YP_001272928.1| - 3.1e-12 46.1 1.2 5.5e-12 45.3 0.8 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|148642415|ref|YP_001272928.1| - 1.8e-07 31.0 2.0 3.5e-07 30.1 1.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|148642415|ref|YP_001272928.1| - 0.00011 22.3 0.0 0.00016 21.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|148642415|ref|YP_001272928.1| - 0.0021 17.6 0.1 0.0047 16.5 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zf-DNL PF05180.7 gi|148642415|ref|YP_001272928.1| - 0.031 13.9 1.1 0.093 12.4 0.8 1.8 1 0 0 1 1 1 0 DNL zinc finger DUF1178 PF06676.6 gi|148642415|ref|YP_001272928.1| - 0.12 12.5 3.7 0.044 13.9 1.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1178) Sgf11 PF08209.6 gi|148642415|ref|YP_001272928.1| - 0.19 11.0 2.1 0.35 10.2 0.2 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF356 PF04009.7 gi|148642416|ref|YP_001272929.1| - 6.1e-34 116.3 0.6 8.4e-34 115.8 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF356) tRNA_synt_1c_R1 PF04558.10 gi|148642416|ref|YP_001272929.1| - 0.042 13.3 0.2 0.052 13.0 0.2 1.4 1 1 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 YolD PF08863.5 gi|148642416|ref|YP_001272929.1| - 0.068 13.0 0.5 0.11 12.4 0.1 1.5 2 0 0 2 2 2 0 YolD-like protein RBB1NT PF08169.6 gi|148642418|ref|YP_001272931.1| - 0.07 13.0 0.4 0.37 10.7 0.0 2.0 1 1 1 2 2 2 0 RBB1NT (NUC162) domain DUF2187 PF09953.4 gi|148642418|ref|YP_001272931.1| - 0.11 12.2 0.8 0.11 12.2 0.6 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2187) DUF2633 PF11119.3 gi|148642418|ref|YP_001272931.1| - 0.14 11.8 0.9 0.29 10.8 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2633) Mur_ligase_M PF08245.7 gi|148642419|ref|YP_001272932.1| - 6e-23 81.8 0.3 9.4e-23 81.2 0.2 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|148642419|ref|YP_001272932.1| - 8.3e-08 32.1 0.0 2.6e-07 30.5 0.0 1.8 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Glycos_transf_4 PF00953.16 gi|148642420|ref|YP_001272933.1| - 1.2e-25 90.1 15.4 1.2e-25 90.1 10.7 3.2 2 1 1 3 3 3 2 Glycosyl transferase family 4 MraY_sig1 PF10555.4 gi|148642420|ref|YP_001272933.1| - 3.8e-05 22.6 1.0 3.8e-05 22.6 0.7 2.9 3 0 0 3 3 3 1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ATP-grasp_4 PF13535.1 gi|148642421|ref|YP_001272934.1| - 4.9e-22 78.5 0.0 9.5e-22 77.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|148642421|ref|YP_001272934.1| - 2.6e-16 59.2 0.1 5.7e-15 54.8 0.0 2.5 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|148642421|ref|YP_001272934.1| - 2.6e-14 53.4 0.0 9.2e-14 51.6 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|148642421|ref|YP_001272934.1| - 2e-12 46.8 0.0 3.5e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|148642421|ref|YP_001272934.1| - 1.4e-10 40.8 0.0 3.2e-10 39.7 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|148642421|ref|YP_001272934.1| - 1.3e-09 37.6 0.0 2.1e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|148642421|ref|YP_001272934.1| - 0.00014 21.3 0.0 0.00041 19.8 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GARS_A PF01071.14 gi|148642421|ref|YP_001272934.1| - 0.00063 19.3 0.1 0.002 17.7 0.1 1.9 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_ST PF14397.1 gi|148642421|ref|YP_001272934.1| - 0.0054 15.8 0.2 0.5 9.4 0.1 2.4 2 1 0 2 2 2 1 Sugar-transfer associated ATP-grasp HycI PF01750.13 gi|148642422|ref|YP_001272935.1| - 2.2e-19 69.3 0.0 2.6e-19 69.0 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase maturation protease Pox_L3_FP4 PF03339.9 gi|148642422|ref|YP_001272935.1| - 0.087 11.2 0.0 0.11 10.9 0.0 1.1 1 0 0 1 1 1 0 Poxvirus L3/FP4 protein DUF1256 PF06866.6 gi|148642422|ref|YP_001272935.1| - 0.18 10.9 0.7 0.63 9.2 0.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1256) Methyltransf_31 PF13847.1 gi|148642423|ref|YP_001272936.1| - 1.2e-11 44.4 1.3 1.7e-11 43.9 0.9 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148642423|ref|YP_001272936.1| - 2.5e-10 40.8 0.0 4.6e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|148642423|ref|YP_001272936.1| - 6.1e-10 38.7 0.0 1.3e-09 37.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|148642423|ref|YP_001272936.1| - 9.4e-10 38.0 0.0 1.3e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|148642423|ref|YP_001272936.1| - 1.6e-09 37.2 0.0 2.1e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|148642423|ref|YP_001272936.1| - 5.2e-08 33.2 0.0 8.8e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|148642423|ref|YP_001272936.1| - 2.6e-07 30.9 0.0 4.3e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|148642423|ref|YP_001272936.1| - 1e-06 29.1 0.0 1.7e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PRMT5 PF05185.11 gi|148642423|ref|YP_001272936.1| - 5e-05 22.4 0.4 6.2e-05 22.0 0.3 1.1 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase NodS PF05401.6 gi|148642423|ref|YP_001272936.1| - 8.5e-05 22.0 0.0 0.00012 21.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_26 PF13659.1 gi|148642423|ref|YP_001272936.1| - 0.00028 20.9 0.0 0.00042 20.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148642423|ref|YP_001272936.1| - 0.00031 20.4 0.0 0.00044 20.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|148642423|ref|YP_001272936.1| - 0.00066 19.2 1.0 0.001 18.6 0.2 1.8 2 1 0 2 2 2 1 RNA cap guanine-N2 methyltransferase TehB PF03848.9 gi|148642423|ref|YP_001272936.1| - 0.001 18.2 0.1 0.0015 17.7 0.1 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.1 gi|148642423|ref|YP_001272936.1| - 0.0091 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_PK PF05891.7 gi|148642423|ref|YP_001272936.1| - 0.019 14.2 0.0 0.031 13.5 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Cons_hypoth95 PF03602.10 gi|148642423|ref|YP_001272936.1| - 0.15 11.4 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 NikR_C PF08753.6 gi|148642424|ref|YP_001272937.1| - 6.6e-29 99.6 4.2 1.4e-28 98.5 2.9 1.6 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|148642424|ref|YP_001272937.1| - 0.00015 21.5 0.1 0.00026 20.7 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family AsnC_trans_reg PF01037.16 gi|148642424|ref|YP_001272937.1| - 0.085 12.5 0.2 0.19 11.4 0.0 1.7 2 1 0 2 2 2 0 AsnC family Fucose_iso_N1 PF07881.7 gi|148642424|ref|YP_001272937.1| - 0.085 12.3 0.2 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 L-fucose isomerase, first N-terminal domain RPA_C PF08784.6 gi|148642425|ref|YP_001272938.1| - 0.0068 16.7 0.0 0.013 15.8 0.0 1.5 1 0 0 1 1 1 1 Replication protein A C terminal TrmB PF01978.14 gi|148642425|ref|YP_001272938.1| - 0.064 12.9 1.5 2.9 7.6 0.2 3.1 1 1 2 3 3 3 0 Sugar-specific transcriptional regulator TrmB Inhibitor_I9 PF05922.11 gi|148642425|ref|YP_001272938.1| - 0.064 13.8 0.1 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 Peptidase inhibitor I9 HTH_45 PF14947.1 gi|148642425|ref|YP_001272938.1| - 1.1 9.1 5.3 1.9 8.3 0.1 2.8 1 1 2 3 3 3 0 Winged helix-turn-helix DUF2115 PF09888.4 gi|148642427|ref|YP_001272940.1| - 2.7e-51 173.8 5.2 3.3e-51 173.6 3.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) Glu_synthase PF01645.12 gi|148642428|ref|YP_001272941.1| - 2.5e-125 418.2 4.4 2.5e-125 418.2 3.1 1.7 2 0 0 2 2 1 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|148642428|ref|YP_001272941.1| - 4.7e-12 45.4 4.9 4.7e-12 45.4 3.4 2.3 2 1 0 3 3 3 1 FMN-dependent dehydrogenase NMO PF03060.10 gi|148642428|ref|YP_001272941.1| - 3.5e-10 39.5 13.5 1.7e-09 37.2 9.3 2.0 1 1 0 1 1 1 1 Nitronate monooxygenase Fer4_21 PF14697.1 gi|148642428|ref|YP_001272941.1| - 1.6e-07 31.0 8.2 1.6e-07 31.0 5.7 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148642428|ref|YP_001272941.1| - 5.4e-07 28.9 2.0 5.4e-07 28.9 1.4 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148642428|ref|YP_001272941.1| - 1.6e-06 28.2 11.4 1.6e-06 28.2 7.9 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148642428|ref|YP_001272941.1| - 2.5e-06 27.7 20.2 0.00014 22.1 7.3 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642428|ref|YP_001272941.1| - 6.5e-06 25.8 22.3 0.00013 21.6 8.3 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain IMPDH PF00478.20 gi|148642428|ref|YP_001272941.1| - 1.4e-05 24.1 4.0 1.4e-05 24.1 2.8 2.3 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4_16 PF13484.1 gi|148642428|ref|YP_001272941.1| - 5.8e-05 23.7 11.2 0.0026 18.4 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|148642428|ref|YP_001272941.1| - 0.00078 19.2 2.2 0.00078 19.2 1.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain His_biosynth PF00977.16 gi|148642428|ref|YP_001272941.1| - 0.0013 18.0 0.8 0.0026 17.0 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein Fer4_8 PF13183.1 gi|148642428|ref|YP_001272941.1| - 0.0025 17.7 18.0 0.02 14.9 0.7 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Glu_syn_central PF04898.9 gi|148642428|ref|YP_001272941.1| - 0.005 16.1 1.2 0.19 10.9 0.2 2.3 2 0 0 2 2 2 1 Glutamate synthase central domain Fer4_17 PF13534.1 gi|148642428|ref|YP_001272941.1| - 0.01 16.1 17.7 0.027 14.8 0.2 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain ThiG PF05690.9 gi|148642428|ref|YP_001272941.1| - 0.03 13.4 5.0 0.029 13.4 0.7 2.3 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|148642428|ref|YP_001272941.1| - 0.03 13.2 0.4 0.064 12.2 0.3 1.5 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Fer4_6 PF12837.2 gi|148642428|ref|YP_001272941.1| - 0.12 12.3 23.1 0.043 13.7 1.5 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148642428|ref|YP_001272941.1| - 1.7 9.1 22.9 0.08 13.3 1.5 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain GXGXG PF01493.14 gi|148642429|ref|YP_001272942.1| - 1.3e-42 145.0 8.7 1.5e-42 144.9 6.1 1.0 1 0 0 1 1 1 1 GXGXG motif GATase_2 PF00310.16 gi|148642430|ref|YP_001272943.1| - 4.1e-22 78.3 0.2 2.9e-15 55.8 0.0 3.0 2 1 0 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|148642430|ref|YP_001272943.1| - 1.9e-19 69.9 0.0 3.1e-19 69.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|148642430|ref|YP_001272943.1| - 1.8e-17 63.1 0.0 3.1e-17 62.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|148642430|ref|YP_001272943.1| - 0.0003 19.5 0.0 0.00051 18.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SNO PF01174.14 gi|148642431|ref|YP_001272944.1| - 4.5e-52 176.4 0.1 5.3e-52 176.1 0.1 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.23 gi|148642431|ref|YP_001272944.1| - 9.8e-09 34.9 0.1 1.3e-05 24.7 0.0 2.1 2 0 0 2 2 2 2 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|148642431|ref|YP_001272944.1| - 1.6e-06 27.8 0.0 2.7e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|148642431|ref|YP_001272944.1| - 0.00043 20.0 0.0 0.00069 19.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 Peptidase_C26 PF07722.8 gi|148642431|ref|YP_001272944.1| - 0.02 14.3 0.3 1.2 8.5 0.2 2.5 2 1 0 2 2 2 0 Peptidase C26 HEAT_2 PF13646.1 gi|148642432|ref|YP_001272945.1| - 4.9e-28 97.2 6.4 9.1e-14 51.5 0.2 2.5 1 1 0 2 2 2 2 HEAT repeats HEAT PF02985.17 gi|148642432|ref|YP_001272945.1| - 2.5e-19 67.5 0.9 2.8e-05 23.8 0.0 5.1 4 1 1 5 5 5 4 HEAT repeat HEAT_PBS PF03130.11 gi|148642432|ref|YP_001272945.1| - 3e-18 64.3 9.4 5.5e-08 32.5 0.7 4.6 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|148642432|ref|YP_001272945.1| - 3.1e-16 59.3 7.6 1e-05 25.8 0.1 4.9 4 1 1 5 5 5 4 HEAT-like repeat Arm PF00514.18 gi|148642432|ref|YP_001272945.1| - 1.6e-10 40.3 1.9 0.0028 17.4 0.0 4.5 4 1 1 5 5 5 3 Armadillo/beta-catenin-like repeat Aconitase_B_N PF11791.3 gi|148642432|ref|YP_001272945.1| - 0.00011 21.9 1.1 1.3 8.7 0.0 3.7 2 1 3 5 5 5 3 Aconitate B N-terminal domain Adaptin_N PF01602.15 gi|148642432|ref|YP_001272945.1| - 0.00013 20.5 0.3 0.051 11.8 0.0 2.7 1 1 2 3 3 3 2 Adaptin N terminal region DUF2019 PF09450.5 gi|148642432|ref|YP_001272945.1| - 0.0055 16.5 0.1 0.1 12.4 0.1 2.2 1 1 2 3 3 3 1 Domain of unknown function (DUF2019) Cnd1 PF12717.2 gi|148642432|ref|YP_001272945.1| - 0.0067 16.2 0.0 8 6.2 0.1 4.1 1 1 1 3 3 3 1 non-SMC mitotic condensation complex subunit 1 UPF0147 PF03685.8 gi|148642432|ref|YP_001272945.1| - 0.092 12.6 2.1 21 5.0 0.1 3.3 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0147) Iso_dh PF00180.15 gi|148642433|ref|YP_001272946.1| - 1.1e-102 343.5 0.0 1.2e-102 343.4 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.7 gi|148642433|ref|YP_001272946.1| - 0.11 11.6 0.0 0.23 10.6 0.0 1.5 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthetic protein PdxA Pox_TAA1 PF03295.9 gi|148642433|ref|YP_001272946.1| - 0.14 11.8 0.5 11 5.8 0.1 2.5 2 0 0 2 2 2 0 Poxvirus trans-activator protein A1 C-terminal AMP-binding PF00501.23 gi|148642434|ref|YP_001272947.1| - 3.4e-91 305.7 0.0 4e-91 305.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|148642434|ref|YP_001272947.1| - 2e-11 44.6 0.1 8.3e-11 42.6 0.0 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AA_kinase PF00696.23 gi|148642435|ref|YP_001272948.1| - 5e-42 144.1 0.6 5.7e-42 143.9 0.4 1.0 1 0 0 1 1 1 1 Amino acid kinase family ADH_N PF08240.7 gi|148642436|ref|YP_001272949.1| - 5.4e-09 35.7 0.0 8.5e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|148642436|ref|YP_001272949.1| - 4.7e-08 32.6 0.0 1.2e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase IspD PF01128.14 gi|148642437|ref|YP_001272950.1| - 2.4e-42 144.9 0.1 2.8e-42 144.7 0.0 1.0 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.2 gi|148642437|ref|YP_001272950.1| - 2.7e-09 37.3 0.0 4.8e-09 36.4 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|148642437|ref|YP_001272950.1| - 3.6e-06 26.4 0.0 5.3e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase DUF3922 PF13059.1 gi|148642437|ref|YP_001272950.1| - 0.12 12.6 1.2 2 8.6 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3992) Methyltransf_11 PF08241.7 gi|148642438|ref|YP_001272951.1| - 4.9e-12 46.1 0.0 6.8e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|148642438|ref|YP_001272951.1| - 2.8e-11 43.2 0.1 3.4e-11 42.9 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|148642438|ref|YP_001272951.1| - 2e-09 37.8 0.1 2.9e-09 37.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|148642438|ref|YP_001272951.1| - 5e-08 32.3 0.3 7.2e-08 31.8 0.2 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|148642438|ref|YP_001272951.1| - 6.8e-07 29.1 0.0 1.4e-06 28.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|148642438|ref|YP_001272951.1| - 2.7e-06 26.8 0.0 3.2e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|148642438|ref|YP_001272951.1| - 3.8e-05 23.9 0.0 0.00015 22.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148642438|ref|YP_001272951.1| - 0.00015 22.3 0.1 0.00022 21.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|148642438|ref|YP_001272951.1| - 0.00026 20.9 0.0 0.00036 20.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|148642438|ref|YP_001272951.1| - 0.00038 19.6 0.1 0.0005 19.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|148642438|ref|YP_001272951.1| - 0.0007 18.7 0.0 0.00096 18.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.8 gi|148642438|ref|YP_001272951.1| - 0.018 14.3 0.1 0.048 12.9 0.0 1.7 2 0 0 2 2 2 0 Histone methylation protein DOT1 Methyltransf_32 PF13679.1 gi|148642438|ref|YP_001272951.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain ArgJ PF01960.13 gi|148642439|ref|YP_001272952.1| - 1.1e-135 451.9 12.6 1.4e-135 451.7 8.8 1.0 1 0 0 1 1 1 1 ArgJ family DUF331 PF03889.8 gi|148642439|ref|YP_001272952.1| - 0.025 13.8 0.1 0.11 11.7 0.1 2.1 1 0 0 1 1 1 0 Domain of unknown function Bcl-2 PF00452.14 gi|148642439|ref|YP_001272952.1| - 0.047 13.8 0.0 0.28 11.3 0.0 2.2 3 1 0 3 3 3 0 Apoptosis regulator proteins, Bcl-2 family DUF1983 PF09327.6 gi|148642439|ref|YP_001272952.1| - 1.2 9.1 5.2 1.1 9.1 0.7 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF1983) RNase_Zc3h12a PF11977.3 gi|148642442|ref|YP_001272955.1| - 3.5e-19 69.1 0.3 5.1e-19 68.6 0.2 1.3 1 0 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain DUF4411 PF14367.1 gi|148642442|ref|YP_001272955.1| - 0.069 12.8 0.1 0.14 11.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) Metallophos_2 PF12850.2 gi|148642443|ref|YP_001272956.1| - 3.3e-20 72.4 0.1 4.6e-20 72.0 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|148642443|ref|YP_001272956.1| - 3.3e-16 59.2 3.0 6.3e-16 58.3 2.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|148642443|ref|YP_001272956.1| - 0.0021 17.2 0.4 3.4 6.7 0.0 3.0 2 1 1 3 3 3 3 Metallophosphoesterase, calcineurin superfamily NAC PF01849.13 gi|148642444|ref|YP_001272957.1| - 1.5e-19 69.2 5.4 2.6e-19 68.4 2.4 1.9 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|148642444|ref|YP_001272957.1| - 4.9e-05 23.0 0.5 4.9e-05 23.0 0.3 2.2 2 0 0 2 2 2 1 UBA/TS-N domain DSBA PF01323.15 gi|148642444|ref|YP_001272957.1| - 0.0026 17.3 1.3 0.003 17.1 0.9 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain B3_4 PF03483.12 gi|148642444|ref|YP_001272957.1| - 0.025 14.0 0.2 0.027 13.9 0.1 1.2 1 0 0 1 1 1 0 B3/4 domain UBA_4 PF14555.1 gi|148642444|ref|YP_001272957.1| - 0.046 13.2 0.7 0.099 12.1 0.5 1.5 1 0 0 1 1 1 0 UBA-like domain DUF3918 PF13056.1 gi|148642444|ref|YP_001272957.1| - 0.16 11.3 6.2 0.27 10.5 4.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3918) DUF1212 PF06738.7 gi|148642444|ref|YP_001272957.1| - 0.16 11.4 0.1 0.23 10.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) CUE PF02845.11 gi|148642444|ref|YP_001272957.1| - 0.17 11.4 1.2 0.23 10.9 0.1 1.8 2 0 0 2 2 2 0 CUE domain tRNA-synt_1c_C PF03950.13 gi|148642444|ref|YP_001272957.1| - 0.23 11.1 1.3 0.53 9.9 0.9 1.6 1 1 0 1 1 1 0 tRNA synthetases class I (E and Q), anti-codon binding domain YbaB_DNA_bd PF02575.11 gi|148642444|ref|YP_001272957.1| - 1.1 9.1 11.2 1.6 8.6 1.0 2.2 2 0 0 2 2 2 0 YbaB/EbfC DNA-binding family Rop-like PF05082.8 gi|148642444|ref|YP_001272957.1| - 6.4 6.3 6.3 4.9 6.6 1.3 2.5 2 1 0 2 2 2 0 Rop-like B12-binding PF02310.14 gi|148642445|ref|YP_001272958.1| - 1.2e-25 89.7 0.1 2.8e-25 88.5 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.16 gi|148642445|ref|YP_001272958.1| - 2e-24 86.6 1.1 2e-24 86.6 0.8 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|148642445|ref|YP_001272958.1| - 0.0012 18.9 0.8 0.0027 17.8 0.6 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|148642445|ref|YP_001272958.1| - 0.057 13.4 0.7 0.21 11.6 0.4 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain tRNA-Thr_ED PF08915.6 gi|148642445|ref|YP_001272958.1| - 0.061 13.2 0.1 0.21 11.5 0.0 1.9 1 0 0 1 1 1 0 Archaea-specific editing domain of threonyl-tRNA synthetase SSF PF00474.12 gi|148642446|ref|YP_001272959.1| - 4.6e-59 200.0 35.3 9.1e-59 199.1 24.5 1.5 1 0 0 1 1 1 1 Sodium:solute symporter family AMP-binding_C_2 PF14535.1 gi|148642447|ref|YP_001272960.1| - 1.8e-31 108.0 0.5 1e-30 105.6 0.3 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|148642447|ref|YP_001272960.1| - 5.9e-14 51.2 0.1 3.1e-13 48.9 0.1 2.0 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|148642447|ref|YP_001272960.1| - 2.7e-05 23.0 0.0 0.00028 19.6 0.0 2.0 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE DUF2683 PF10884.3 gi|148642447|ref|YP_001272960.1| - 0.047 13.6 1.3 0.15 11.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2683) ACT PF01842.20 gi|148642448|ref|YP_001272961.1| - 1.6e-10 40.2 0.3 0.00029 20.2 0.0 2.1 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|148642448|ref|YP_001272961.1| - 0.003 17.0 1.7 0.025 14.1 0.2 2.7 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|148642448|ref|YP_001272961.1| - 0.053 13.8 1.8 0.15 12.4 0.5 2.0 2 1 0 2 2 2 0 ACT domain EF-hand_5 PF13202.1 gi|148642449|ref|YP_001272962.1| - 0.0061 15.8 0.2 0.017 14.4 0.1 1.7 1 0 0 1 1 1 1 EF hand POR PF01558.13 gi|148642451|ref|YP_001272964.1| - 7.3e-34 117.1 0.1 8.6e-34 116.9 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|148642452|ref|YP_001272965.1| - 6.3e-26 90.7 0.0 1.2e-25 89.8 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|148642452|ref|YP_001272965.1| - 8.8e-17 61.3 0.1 1.2e-16 60.8 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_2 PF12797.2 gi|148642452|ref|YP_001272965.1| - 4.2e-07 29.5 13.5 0.00078 19.2 2.1 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|148642452|ref|YP_001272965.1| - 1.3e-06 27.6 13.8 5.1e-06 25.8 2.2 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148642452|ref|YP_001272965.1| - 7e-06 25.7 11.6 1.7e-05 24.5 8.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148642452|ref|YP_001272965.1| - 1.5e-05 25.2 14.2 1.8e-05 25.0 8.1 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148642452|ref|YP_001272965.1| - 1.6e-05 24.5 18.4 5.4e-05 22.8 1.4 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|148642452|ref|YP_001272965.1| - 0.0054 16.5 6.6 0.0064 16.3 2.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642452|ref|YP_001272965.1| - 0.0086 16.3 14.1 0.014 15.6 8.7 2.3 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642452|ref|YP_001272965.1| - 0.04 13.7 15.0 0.78 9.6 2.2 2.6 1 1 0 2 2 2 0 4Fe-4S dicluster domain ROK PF00480.15 gi|148642452|ref|YP_001272965.1| - 0.06 13.1 0.1 0.38 10.5 0.0 2.2 2 0 0 2 2 2 0 ROK family Fer4_15 PF13459.1 gi|148642452|ref|YP_001272965.1| - 0.099 13.2 8.8 0.5 10.9 1.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|148642452|ref|YP_001272965.1| - 0.32 11.7 9.5 0.33 11.7 0.8 2.8 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|148642452|ref|YP_001272965.1| - 2 8.9 20.8 0.37 11.2 2.4 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148642452|ref|YP_001272965.1| - 2.2 8.7 13.9 0.88 10.0 1.7 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642452|ref|YP_001272965.1| - 3.9 7.8 11.3 9.5 6.6 1.5 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148642452|ref|YP_001272965.1| - 5.8 7.0 13.7 20 5.3 8.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain CCG PF02754.11 gi|148642453|ref|YP_001272966.1| - 1.4e-35 121.1 8.9 2.1e-19 69.2 0.3 3.1 3 0 0 3 3 3 2 Cysteine-rich domain Fer2_3 PF13085.1 gi|148642453|ref|YP_001272966.1| - 4.2e-23 81.2 0.2 4.2e-23 81.2 0.1 2.4 3 0 0 3 3 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|148642453|ref|YP_001272966.1| - 4.5e-12 45.8 3.4 4.5e-12 45.8 2.4 3.3 5 0 0 5 5 4 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642453|ref|YP_001272966.1| - 3.9e-09 36.1 4.9 3.9e-09 36.1 3.4 3.0 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642453|ref|YP_001272966.1| - 1.3e-08 34.9 5.3 1.3e-08 34.9 3.7 3.7 4 1 0 4 4 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642453|ref|YP_001272966.1| - 7.1e-08 32.6 4.5 7.1e-08 32.6 3.1 3.7 5 1 1 6 6 5 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148642453|ref|YP_001272966.1| - 1.4e-05 25.4 13.2 0.00062 20.1 0.1 4.2 5 0 0 5 5 5 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148642453|ref|YP_001272966.1| - 4.5e-05 23.7 8.6 4.5e-05 23.7 5.9 3.6 4 1 1 5 5 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148642453|ref|YP_001272966.1| - 0.0043 16.5 3.3 0.0043 16.5 2.3 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148642453|ref|YP_001272966.1| - 0.0046 17.1 2.1 0.0046 17.1 1.4 4.7 6 0 0 6 6 4 2 4Fe-4S binding domain Fer2 PF00111.22 gi|148642453|ref|YP_001272966.1| - 0.0055 16.4 0.2 0.0055 16.4 0.1 3.4 4 0 0 4 4 4 1 2Fe-2S iron-sulfur cluster binding domain Fer4_2 PF12797.2 gi|148642453|ref|YP_001272966.1| - 0.0076 16.1 23.1 0.038 13.9 1.1 4.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|148642453|ref|YP_001272966.1| - 0.0089 15.8 2.6 0.0089 15.8 1.8 4.0 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|148642453|ref|YP_001272966.1| - 0.037 13.8 16.8 0.12 12.2 0.5 3.9 5 0 0 5 5 5 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642453|ref|YP_001272966.1| - 0.045 14.4 0.5 0.045 14.4 0.3 4.1 5 0 0 5 5 4 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|148642453|ref|YP_001272966.1| - 0.18 12.2 9.8 1.9 8.9 1.2 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|148642453|ref|YP_001272966.1| - 1.1 9.8 10.3 0.42 11.1 0.5 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain SpoU_methylase PF00588.14 gi|148642454|ref|YP_001272967.1| - 7.2e-32 110.2 0.0 1.3e-31 109.3 0.0 1.4 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|148642454|ref|YP_001272967.1| - 0.0048 16.4 0.0 0.015 14.7 0.0 1.8 2 0 0 2 2 2 1 SAM-dependent RNA methyltransferase RNase_H2-Ydr279 PF09468.5 gi|148642454|ref|YP_001272967.1| - 9.4 5.3 10.5 28 3.7 0.0 2.2 2 0 0 2 2 2 0 Ydr279p protein family (RNase H2 complex component) Fer4 PF00037.22 gi|148642455|ref|YP_001272968.1| - 1.1e-09 37.4 10.9 2.6e-07 29.9 1.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|148642455|ref|YP_001272968.1| - 6.1e-09 35.3 13.1 3e-05 23.6 1.6 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642455|ref|YP_001272968.1| - 6.5e-08 32.8 22.1 9.3e-06 25.9 8.0 2.8 2 1 3 5 5 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642455|ref|YP_001272968.1| - 2.4e-06 27.2 12.5 2.4e-06 27.2 8.7 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642455|ref|YP_001272968.1| - 7.2e-06 25.7 14.0 7.2e-06 25.7 9.7 2.8 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642455|ref|YP_001272968.1| - 1.4e-05 25.2 12.8 1.4e-05 25.2 8.9 2.5 1 1 1 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642455|ref|YP_001272968.1| - 0.0007 19.3 2.0 0.0007 19.3 1.4 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148642455|ref|YP_001272968.1| - 0.0071 17.0 0.9 0.0071 17.0 0.7 3.7 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|148642455|ref|YP_001272968.1| - 0.0083 16.6 0.2 0.0083 16.6 0.1 3.2 3 0 0 3 3 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|148642455|ref|YP_001272968.1| - 0.0096 16.1 3.6 0.0096 16.1 2.5 3.6 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|148642455|ref|YP_001272968.1| - 0.014 15.7 9.6 0.15 12.4 0.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|148642455|ref|YP_001272968.1| - 0.031 14.6 0.5 0.031 14.6 0.3 3.4 2 1 2 4 4 2 0 4Fe-4S dicluster domain DUF727 PF05303.7 gi|148642455|ref|YP_001272968.1| - 0.15 11.9 3.0 0.93 9.3 0.4 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF727) DDE_Tnp_IS240 PF13610.1 gi|148642456|ref|YP_001272969.1| - 9.6e-08 32.0 0.9 9.6e-08 32.0 0.6 2.6 1 1 1 2 2 2 1 DDE domain MULE PF10551.4 gi|148642456|ref|YP_001272969.1| - 2.7e-06 27.4 0.2 8.8e-06 25.8 0.1 1.9 2 0 0 2 2 2 1 MULE transposase domain zf-ISL3 PF14690.1 gi|148642456|ref|YP_001272969.1| - 0.00041 20.3 3.0 0.0036 17.2 2.1 2.4 1 1 1 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 rve PF00665.21 gi|148642456|ref|YP_001272969.1| - 0.00049 20.2 0.3 0.005 16.9 0.1 2.3 2 0 0 2 2 2 1 Integrase core domain Zn-ribbon_8 PF09723.5 gi|148642456|ref|YP_001272969.1| - 0.083 12.8 2.3 9.6 6.2 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|148642456|ref|YP_001272969.1| - 0.82 9.3 5.5 9.5 5.9 0.5 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Xan_ur_permease PF00860.15 gi|148642457|ref|YP_001272970.1| - 1.2e-89 300.5 46.9 1.4e-89 300.2 32.5 1.1 1 0 0 1 1 1 1 Permease family FeoB_C PF07664.7 gi|148642457|ref|YP_001272970.1| - 0.054 12.9 0.5 0.054 12.9 0.3 5.2 5 0 0 5 5 5 0 Ferrous iron transport protein B C terminus UPRTase PF14681.1 gi|148642458|ref|YP_001272971.1| - 5e-72 241.4 0.0 5.9e-72 241.2 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|148642458|ref|YP_001272971.1| - 6e-12 45.3 0.0 9.2e-12 44.7 0.0 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase domain DCD PF06559.6 gi|148642462|ref|YP_001272975.1| - 7.6e-19 67.3 0.1 5.2e-11 41.5 0.0 2.1 1 1 0 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.14 gi|148642462|ref|YP_001272975.1| - 7.1e-15 54.6 0.0 1e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 dUTPase RNase_PH_C PF03725.10 gi|148642462|ref|YP_001272975.1| - 0.025 14.5 0.2 2.3 8.2 0.0 3.1 1 1 0 2 2 2 0 3' exoribonuclease family, domain 2 tRNA-synt_2b PF00587.20 gi|148642463|ref|YP_001272976.1| - 3e-62 209.2 0.1 4.2e-62 208.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|148642463|ref|YP_001272976.1| - 5.2e-24 84.0 0.7 1e-23 83.0 0.2 1.8 2 0 0 2 2 2 1 Anticodon binding domain UPF0547 PF10571.4 gi|148642463|ref|YP_001272976.1| - 0.0027 17.3 1.2 0.82 9.4 0.1 2.4 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|148642463|ref|YP_001272976.1| - 0.0088 15.9 0.1 2.4 8.1 0.0 2.4 2 0 0 2 2 2 2 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|148642463|ref|YP_001272976.1| - 0.092 12.0 1.3 6.2 6.2 0.0 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|148642463|ref|YP_001272976.1| - 0.6 9.6 3.3 1.5 8.3 0.3 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|148642463|ref|YP_001272976.1| - 0.71 9.1 3.6 3.2 7.1 2.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DUF1724 PF08350.5 gi|148642464|ref|YP_001272977.1| - 3.7e-17 61.6 0.1 7.4e-17 60.6 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_24 PF13412.1 gi|148642464|ref|YP_001272977.1| - 0.022 14.1 0.0 0.18 11.2 0.0 2.4 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|148642464|ref|YP_001272977.1| - 0.043 13.8 0.0 0.093 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|148642464|ref|YP_001272977.1| - 0.044 13.4 0.1 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_5 PF01022.15 gi|148642464|ref|YP_001272977.1| - 0.052 13.2 0.1 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|148642464|ref|YP_001272977.1| - 0.053 13.2 0.0 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF2431 PF10354.4 gi|148642464|ref|YP_001272977.1| - 0.059 13.3 0.3 0.16 11.9 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF2431) HTH_45 PF14947.1 gi|148642464|ref|YP_001272977.1| - 0.11 12.2 1.0 6 6.7 0.4 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|148642464|ref|YP_001272977.1| - 0.15 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 MarR family TatD_DNase PF01026.16 gi|148642465|ref|YP_001272978.1| - 3.3e-30 105.1 0.1 3.8e-30 104.9 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Peptidase_M19 PF01244.16 gi|148642465|ref|YP_001272978.1| - 0.026 13.4 0.0 0.052 12.4 0.0 1.6 2 0 0 2 2 2 0 Membrane dipeptidase (Peptidase family M19) RuvA_C PF07499.8 gi|148642465|ref|YP_001272978.1| - 0.15 12.2 0.2 0.7 10.0 0.0 2.1 2 0 0 2 2 2 0 RuvA, C-terminal domain DUF552 PF04472.7 gi|148642466|ref|YP_001272979.1| - 7.8e-08 32.1 0.1 1.1e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) DUF1611 PF07755.6 gi|148642467|ref|YP_001272980.1| - 1.9e-66 223.7 0.0 2.2e-66 223.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) AAA_17 PF13207.1 gi|148642468|ref|YP_001272981.1| - 6.7e-13 49.5 2.4 1.5e-12 48.3 1.7 1.9 1 1 0 1 1 1 1 AAA domain 3H PF02829.9 gi|148642468|ref|YP_001272981.1| - 7.3e-12 45.1 3.0 1.1e-11 44.5 0.2 2.3 2 0 0 2 2 2 1 3H domain AAA_18 PF13238.1 gi|148642468|ref|YP_001272981.1| - 1.1e-09 38.6 0.8 3.3e-09 37.1 0.1 2.1 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|148642468|ref|YP_001272981.1| - 0.0013 18.5 0.0 0.0081 16.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|148642468|ref|YP_001272981.1| - 0.0041 16.5 0.6 0.0041 16.5 0.4 2.5 2 2 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.7 gi|148642468|ref|YP_001272981.1| - 0.0068 15.5 0.0 0.013 14.6 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.24 gi|148642468|ref|YP_001272981.1| - 0.01 16.0 0.1 0.66 10.1 0.0 2.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|148642468|ref|YP_001272981.1| - 0.011 15.8 0.1 0.074 13.2 0.0 2.3 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.12 gi|148642468|ref|YP_001272981.1| - 0.013 14.8 1.0 1.2 8.4 0.2 2.8 2 1 0 2 2 2 0 Thymidylate kinase Cytidylate_kin2 PF13189.1 gi|148642468|ref|YP_001272981.1| - 0.015 15.2 0.7 0.015 15.2 0.5 2.5 1 1 1 2 2 2 0 Cytidylate kinase-like family ADK PF00406.17 gi|148642468|ref|YP_001272981.1| - 0.039 13.8 0.2 0.25 11.2 0.0 2.1 2 0 0 2 2 2 0 Adenylate kinase ApbA PF02558.11 gi|148642468|ref|YP_001272981.1| - 0.042 13.2 0.4 0.11 11.8 0.4 1.6 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA RNA_helicase PF00910.17 gi|148642468|ref|YP_001272981.1| - 0.047 13.8 0.0 0.14 12.3 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.1 gi|148642468|ref|YP_001272981.1| - 0.066 13.1 0.1 0.14 12.1 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain Hydrolase_6 PF13344.1 gi|148642468|ref|YP_001272981.1| - 0.071 12.9 0.0 0.54 10.1 0.0 2.4 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase APS_kinase PF01583.15 gi|148642468|ref|YP_001272981.1| - 0.089 12.4 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_31 PF13614.1 gi|148642468|ref|YP_001272981.1| - 0.1 12.5 0.5 0.29 11.0 0.2 2.1 2 1 0 2 2 2 0 AAA domain SKI PF01202.17 gi|148642468|ref|YP_001272981.1| - 0.2 11.5 2.7 0.29 10.9 0.0 2.6 3 1 1 4 4 4 0 Shikimate kinase AAA_23 PF13476.1 gi|148642468|ref|YP_001272981.1| - 6.8 6.9 19.5 8.6 6.6 10.5 2.3 2 1 0 2 2 2 0 AAA domain zf-ZPR1 PF03367.8 gi|148642469|ref|YP_001272982.1| - 2.9e-46 156.5 0.9 3.5e-46 156.2 0.6 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain zf-ribbon_3 PF13248.1 gi|148642469|ref|YP_001272982.1| - 0.024 13.8 0.7 1.4 8.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|148642469|ref|YP_001272982.1| - 0.1 11.6 0.4 0.1 11.6 0.3 1.9 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-DNA_Pol PF08996.5 gi|148642469|ref|YP_001272982.1| - 0.11 11.8 0.6 0.19 11.0 0.4 1.4 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zinc_ribbon_5 PF13719.1 gi|148642469|ref|YP_001272982.1| - 0.14 11.7 5.2 1.1 8.8 0.4 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|148642469|ref|YP_001272982.1| - 0.16 11.6 5.2 1.3 8.7 0.5 2.7 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|148642469|ref|YP_001272982.1| - 0.35 10.6 1.7 1.6 8.5 1.2 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon YokU PF14122.1 gi|148642469|ref|YP_001272982.1| - 0.59 9.8 3.1 10 5.9 0.2 2.4 1 1 1 2 2 2 0 YokU-like protein TF_Zn_Ribbon PF08271.7 gi|148642469|ref|YP_001272982.1| - 2.6 7.4 5.3 48 3.3 3.7 2.6 1 1 0 1 1 1 0 TFIIB zinc-binding CBFD_NFYB_HMF PF00808.18 gi|148642470|ref|YP_001272983.1| - 7.3e-05 22.7 2.4 0.0017 18.3 0.0 2.9 3 0 0 3 3 3 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DUF4276 PF14103.1 gi|148642470|ref|YP_001272983.1| - 0.024 14.4 0.5 0.051 13.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4276) DUF1249 PF06853.7 gi|148642470|ref|YP_001272983.1| - 0.051 13.2 0.7 0.32 10.6 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1249) TUG-UBL1 PF11470.3 gi|148642470|ref|YP_001272983.1| - 0.056 13.3 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 GLUT4 regulating protein TUG THP2 PF09432.5 gi|148642470|ref|YP_001272983.1| - 0.19 11.5 2.7 0.28 11.0 1.1 1.7 1 1 1 2 2 2 0 Tho complex subunit THP2 DUF3456 PF11938.3 gi|148642470|ref|YP_001272983.1| - 7.7 6.4 9.7 12 5.8 5.5 2.2 1 1 1 2 2 2 0 TLR4 regulator and MIR-interacting MSAP DUF11 PF01345.13 gi|148642471|ref|YP_001272984.1| - 4.9e-76 250.7 22.8 1.1e-12 47.8 0.4 6.8 6 0 0 6 6 6 6 Domain of unknown function DUF11 CARDB PF07705.6 gi|148642471|ref|YP_001272984.1| - 5.5e-14 52.0 58.4 0.003 17.5 3.0 7.0 6 0 0 6 6 6 6 CARDB Chlam_PMP PF02415.12 gi|148642471|ref|YP_001272984.1| - 3.3e-06 27.0 55.3 0.048 13.9 0.9 10.6 9 0 0 9 9 9 5 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Chlam_OMP6 PF03504.8 gi|148642471|ref|YP_001272984.1| - 6.8e-05 23.0 2.0 0.57 10.4 0.0 3.9 4 0 0 4 4 4 2 Chlamydia cysteine-rich outer membrane protein 6 DUF3244 PF11589.3 gi|148642471|ref|YP_001272984.1| - 0.037 13.7 0.0 0.037 13.7 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3244) TRAP_beta PF05753.9 gi|148642471|ref|YP_001272984.1| - 0.22 10.6 12.4 1.6 7.8 0.2 3.6 4 0 0 4 4 4 0 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|148642471|ref|YP_001272984.1| - 0.55 10.3 2.6 73 3.5 0.0 4.5 5 0 0 5 5 5 0 NPCBM-associated, NEW3 domain of alpha-galactosidase PMBR PF09373.5 gi|148642472|ref|YP_001272985.1| - 0.0014 18.4 1.0 0.0014 18.4 0.7 3.4 4 0 0 4 4 4 1 Pseudomurein-binding repeat ODV-E18 PF10717.4 gi|148642472|ref|YP_001272985.1| - 0.042 13.2 0.3 0.042 13.2 0.2 2.6 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 TMEM154 PF15102.1 gi|148642472|ref|YP_001272985.1| - 0.05 13.3 0.0 0.05 13.3 0.0 1.9 2 0 0 2 2 2 0 TMEM154 protein family Rifin_STEVOR PF02009.11 gi|148642472|ref|YP_001272985.1| - 0.12 12.0 2.0 0.17 11.4 0.1 2.0 2 0 0 2 2 2 0 Rifin/stevor family HTH_27 PF13463.1 gi|148642473|ref|YP_001272986.1| - 1e-08 35.3 0.0 1.9e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|148642473|ref|YP_001272986.1| - 2.4e-07 30.3 0.0 4.3e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|148642473|ref|YP_001272986.1| - 4.6e-07 29.7 0.6 3.4e-06 26.9 0.1 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|148642473|ref|YP_001272986.1| - 5.1e-05 22.8 0.0 7.1e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|148642473|ref|YP_001272986.1| - 0.00013 21.6 0.1 0.0002 21.0 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|148642473|ref|YP_001272986.1| - 0.00019 21.0 0.4 0.00038 20.0 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|148642473|ref|YP_001272986.1| - 0.00022 20.8 0.2 0.00036 20.1 0.1 1.4 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.1 gi|148642473|ref|YP_001272986.1| - 0.057 12.8 0.0 0.15 11.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF727 PF05303.7 gi|148642473|ref|YP_001272986.1| - 0.068 12.9 0.2 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF727) B-block_TFIIIC PF04182.7 gi|148642473|ref|YP_001272986.1| - 0.41 10.5 0.1 0.41 10.5 0.1 2.5 3 0 0 3 3 3 0 B-block binding subunit of TFIIIC MatE PF01554.13 gi|148642474|ref|YP_001272987.1| - 1.6e-51 174.1 53.4 1.6e-27 96.1 10.7 2.9 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|148642474|ref|YP_001272987.1| - 2.8e-10 40.1 33.5 6.8e-10 38.9 11.7 5.1 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|148642474|ref|YP_001272987.1| - 6.8e-05 22.4 53.8 0.0079 15.6 14.6 4.5 1 1 2 3 3 3 3 Polysaccharide biosynthesis protein AA_kinase PF00696.23 gi|148642475|ref|YP_001272988.1| - 7e-30 104.3 0.6 1.1e-29 103.7 0.4 1.3 1 0 0 1 1 1 1 Amino acid kinase family DHFR_1 PF00186.14 gi|148642475|ref|YP_001272988.1| - 0.11 12.0 0.2 9.8 5.7 0.0 2.3 1 1 1 2 2 2 0 Dihydrofolate reductase TatD_DNase PF01026.16 gi|148642476|ref|YP_001272989.1| - 7.1e-65 218.7 0.0 8e-65 218.5 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase DUF3437 PF11919.3 gi|148642476|ref|YP_001272989.1| - 0.09 12.4 0.0 0.23 11.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) DUF2116 PF09889.4 gi|148642477|ref|YP_001272990.1| - 1.4e-28 98.4 0.3 1.5e-28 98.3 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) UPF0547 PF10571.4 gi|148642477|ref|YP_001272990.1| - 2.9e-06 26.8 2.4 4.5e-06 26.2 1.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|148642477|ref|YP_001272990.1| - 0.031 13.4 0.5 0.052 12.7 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Ecl1 PF12855.2 gi|148642477|ref|YP_001272990.1| - 0.054 12.7 0.1 0.059 12.6 0.0 1.2 1 0 0 1 1 1 0 Life-span regulatory factor zinc_ribbon_2 PF13240.1 gi|148642477|ref|YP_001272990.1| - 0.091 12.2 0.8 0.15 11.5 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|148642477|ref|YP_001272990.1| - 0.093 12.5 0.8 0.12 12.2 0.5 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|148642477|ref|YP_001272990.1| - 0.19 11.2 1.7 0.88 9.1 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DiS_P_DiS PF06750.8 gi|148642477|ref|YP_001272990.1| - 0.69 9.7 2.6 2.5 7.9 1.8 1.8 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Auto_anti-p27 PF06677.7 gi|148642477|ref|YP_001272990.1| - 0.76 9.5 6.7 0.92 9.3 3.5 2.0 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2256 PF10013.4 gi|148642477|ref|YP_001272990.1| - 4 7.2 5.7 0.92 9.3 0.2 2.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) YbjQ_1 PF01906.12 gi|148642478|ref|YP_001272991.1| - 6.7e-35 119.6 1.3 7.3e-35 119.5 0.9 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.3 gi|148642478|ref|YP_001272991.1| - 0.025 14.6 0.1 0.045 13.8 0.1 1.4 1 0 0 1 1 1 0 Selenium binding protein Ag332 PF04671.7 gi|148642478|ref|YP_001272991.1| - 0.04 13.6 0.0 0.086 12.6 0.0 1.5 1 0 0 1 1 1 0 Erythrocyte membrane-associated giant protein antigen 332 DUF4156 PF13698.1 gi|148642478|ref|YP_001272991.1| - 0.09 12.6 0.2 0.15 11.9 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4156) YbjQ_1 PF01906.12 gi|148642479|ref|YP_001272992.1| - 0.003 17.9 0.0 0.0075 16.6 0.0 1.6 1 0 0 1 1 1 1 Putative heavy-metal-binding TauE PF01925.14 gi|148642480|ref|YP_001272993.1| - 6.5e-27 94.5 19.2 7.2e-27 94.3 13.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF4231 PF14015.1 gi|148642480|ref|YP_001272993.1| - 3.3 7.7 4.8 27 4.7 3.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) Glyco_trans_1_3 PF13528.1 gi|148642483|ref|YP_001272996.1| - 1.3e-84 284.1 0.0 2.2e-84 283.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 1 Glycos_transf_2 PF00535.21 gi|148642483|ref|YP_001272996.1| - 8.5e-28 97.1 1.5 1.9e-27 96.0 0.0 2.4 4 0 0 4 4 4 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|148642483|ref|YP_001272996.1| - 3.3e-11 42.7 0.2 3.3e-11 42.7 0.1 3.3 4 1 0 4 4 4 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|148642483|ref|YP_001272996.1| - 1.2e-10 41.5 0.0 7.6e-10 38.9 0.0 2.3 2 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tran_28_C PF04101.11 gi|148642483|ref|YP_001272996.1| - 6.1e-05 22.7 0.1 6.1e-05 22.7 0.1 2.1 2 0 0 2 2 2 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_21 PF13506.1 gi|148642483|ref|YP_001272996.1| - 0.0027 16.9 0.0 0.011 14.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.1 gi|148642483|ref|YP_001272996.1| - 0.0033 16.7 0.1 0.091 11.9 0.1 2.6 1 1 0 1 1 1 1 Glycosyltransferase like family Strep_SA_rep PF06696.6 gi|148642483|ref|YP_001272996.1| - 0.0086 15.8 0.6 0.025 14.3 0.4 1.7 1 0 0 1 1 1 1 Streptococcal surface antigen repeat EIIBC-GUT_N PF03612.9 gi|148642483|ref|YP_001272996.1| - 0.013 15.1 0.6 0.55 9.8 0.0 2.4 2 0 0 2 2 2 0 Sorbitol phosphotransferase enzyme II N-terminus PCYCGC PF13798.1 gi|148642483|ref|YP_001272996.1| - 0.054 13.1 0.1 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function with PCYCGC motif Glyco_tranf_2_4 PF13704.1 gi|148642483|ref|YP_001272996.1| - 0.061 13.6 0.0 0.33 11.3 0.0 2.3 1 1 0 1 1 1 0 Glycosyl transferase family 2 Sec20 PF03908.8 gi|148642483|ref|YP_001272996.1| - 2.3 8.0 6.3 0.42 10.3 0.8 2.5 3 0 0 3 3 3 0 Sec20 TFIIB PF00382.14 gi|148642484|ref|YP_001272997.1| - 4.6e-44 148.1 0.9 1.1e-22 79.5 0.2 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|148642484|ref|YP_001272997.1| - 9.5e-18 63.2 1.1 9.5e-18 63.2 0.7 2.0 3 0 0 3 3 3 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|148642484|ref|YP_001272997.1| - 0.00086 18.5 0.2 0.075 12.3 0.1 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 zf-ribbon_3 PF13248.1 gi|148642484|ref|YP_001272997.1| - 0.0027 16.8 0.3 0.0027 16.8 0.2 1.7 2 0 0 2 2 1 1 zinc-ribbon domain UPF0181 PF03701.9 gi|148642484|ref|YP_001272997.1| - 0.005 16.1 0.1 0.0099 15.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0181) OrfB_Zn_ribbon PF07282.6 gi|148642484|ref|YP_001272997.1| - 0.022 14.4 0.2 0.057 13.0 0.2 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Cyclin_N PF00134.18 gi|148642484|ref|YP_001272997.1| - 0.029 13.9 0.0 5.5 6.5 0.0 2.2 1 1 1 2 2 2 0 Cyclin, N-terminal domain Lar_restr_allev PF14354.1 gi|148642484|ref|YP_001272997.1| - 0.034 14.4 0.9 0.6 10.4 0.2 2.4 2 0 0 2 2 2 0 Restriction alleviation protein Lar HTH_AsnC-type PF13404.1 gi|148642484|ref|YP_001272997.1| - 0.044 13.3 0.4 0.32 10.5 0.0 2.6 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain DZR PF12773.2 gi|148642484|ref|YP_001272997.1| - 0.059 13.1 1.0 0.16 11.8 0.1 2.0 2 0 0 2 2 2 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|148642484|ref|YP_001272997.1| - 0.07 12.6 3.5 0.12 11.8 0.1 2.5 3 0 0 3 3 3 0 A2L zinc ribbon domain Ribosomal_S27e PF01667.12 gi|148642484|ref|YP_001272997.1| - 0.077 12.5 0.7 0.16 11.5 0.5 1.5 1 0 0 1 1 1 0 Ribosomal protein S27 Cyclin_C PF02984.14 gi|148642484|ref|YP_001272997.1| - 0.15 12.0 0.0 1.4 8.8 0.0 2.1 1 1 1 2 2 2 0 Cyclin, C-terminal domain zinc_ribbon_2 PF13240.1 gi|148642484|ref|YP_001272997.1| - 0.15 11.5 0.9 3.9 7.0 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HTH_23 PF13384.1 gi|148642484|ref|YP_001272997.1| - 0.2 11.3 0.1 0.2 11.3 0.0 2.8 3 0 0 3 3 2 0 Homeodomain-like domain zf-FPG_IleRS PF06827.9 gi|148642484|ref|YP_001272997.1| - 0.36 10.5 4.1 0.64 9.7 0.6 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.5 gi|148642484|ref|YP_001272997.1| - 1.8 8.5 7.8 0.29 11.1 0.5 2.7 2 1 1 3 3 3 0 Zinc ribbon domain UPF0547 PF10571.4 gi|148642484|ref|YP_001272997.1| - 5.2 6.8 7.4 12 5.7 0.2 2.8 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|148642484|ref|YP_001272997.1| - 7.2 6.5 8.0 5.9 6.7 2.7 2.6 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Gar1 PF04410.9 gi|148642485|ref|YP_001272998.1| - 4.9e-12 45.5 0.1 4.9e-12 45.5 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Methyltransf_6 PF03737.10 gi|148642486|ref|YP_001272999.1| - 9.6e-35 119.7 0.1 1.3e-34 119.3 0.1 1.2 1 0 0 1 1 1 1 Demethylmenaquinone methyltransferase Toprim_4 PF13662.1 gi|148642487|ref|YP_001273000.1| - 3.2e-07 30.2 0.2 1e-06 28.6 0.1 2.0 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|148642487|ref|YP_001273000.1| - 0.048 13.6 0.1 0.048 13.6 0.1 3.1 2 2 0 2 2 2 0 Toprim domain Phage_integrase PF00589.17 gi|148642488|ref|YP_001273001.1| - 2.1e-41 141.4 0.1 1.1e-40 139.1 0.1 1.9 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|148642488|ref|YP_001273001.1| - 5.6e-06 26.5 11.5 9.8e-05 22.6 3.1 3.2 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|148642488|ref|YP_001273001.1| - 0.0013 18.8 1.1 0.2 11.8 0.1 3.0 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.3 gi|148642488|ref|YP_001273001.1| - 0.004 15.9 0.1 0.0052 15.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3435) Integrase_1 PF12835.2 gi|148642488|ref|YP_001273001.1| - 0.0098 15.6 0.1 0.023 14.4 0.1 1.6 1 1 0 1 1 1 1 Integrase BioY PF02632.9 gi|148642489|ref|YP_001273002.1| - 4.2e-38 130.3 15.6 4.2e-38 130.3 10.8 1.5 1 1 1 2 2 2 1 BioY family DUF4112 PF13430.1 gi|148642489|ref|YP_001273002.1| - 0.3 11.0 5.9 6.3 6.7 0.4 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4112) SNARE_assoc PF09335.6 gi|148642489|ref|YP_001273002.1| - 3.8 7.7 13.7 1.7 8.8 6.9 2.4 2 1 0 2 2 2 0 SNARE associated Golgi protein ECF-ribofla_trS PF07155.7 gi|148642489|ref|YP_001273002.1| - 4.3 7.0 19.2 38 3.9 13.2 2.3 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component DUF1284 PF06935.6 gi|148642490|ref|YP_001273003.1| - 1.8e-23 82.6 10.0 2.1e-23 82.4 6.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) Cas_Csx8 PF09657.5 gi|148642490|ref|YP_001273003.1| - 0.0021 16.8 3.0 0.0023 16.7 2.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein Csx8 (Cas_Csx8) zf-C4pol PF14260.1 gi|148642490|ref|YP_001273003.1| - 0.98 9.4 8.2 0.66 10.0 1.4 2.2 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta ATP-grasp_3 PF02655.9 gi|148642491|ref|YP_001273004.1| - 4.6e-31 107.8 0.3 1e-30 106.7 0.2 1.6 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|148642491|ref|YP_001273004.1| - 9.4e-15 54.8 0.0 1.9e-14 53.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|148642491|ref|YP_001273004.1| - 1.3e-13 50.4 0.1 9.3e-07 27.8 0.0 2.9 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|148642491|ref|YP_001273004.1| - 9.8e-07 28.2 0.0 9.3e-06 25.0 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|148642491|ref|YP_001273004.1| - 1.2e-06 28.0 0.2 2.8e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|148642491|ref|YP_001273004.1| - 4.5e-05 23.0 1.0 0.0024 17.4 0.7 2.4 1 1 0 1 1 1 1 RimK-like ATP-grasp domain TTL PF03133.10 gi|148642491|ref|YP_001273004.1| - 0.0001 21.3 0.7 0.00025 20.0 0.1 1.8 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_ST PF14397.1 gi|148642491|ref|YP_001273004.1| - 0.00074 18.6 2.3 0.5 9.3 0.3 2.4 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.17 gi|148642491|ref|YP_001273004.1| - 0.019 14.3 0.0 0.13 11.6 0.0 2.0 2 0 0 2 2 2 0 ATP-grasp domain DUF3753 PF12575.3 gi|148642492|ref|YP_001273005.1| - 0.066 13.0 0.9 0.076 12.8 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3753) ATP-synt_D PF01813.12 gi|148642493|ref|YP_001273006.1| - 3e-66 222.7 11.1 3.5e-66 222.5 7.7 1.1 1 0 0 1 1 1 1 ATP synthase subunit D PhoH PF02562.11 gi|148642493|ref|YP_001273006.1| - 0.06 12.5 1.2 0.084 12.1 0.6 1.4 2 0 0 2 2 2 0 PhoH-like protein DUF848 PF05852.6 gi|148642493|ref|YP_001273006.1| - 0.18 11.6 6.6 0.13 12.1 1.9 2.0 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) PaaSYMP PF14738.1 gi|148642493|ref|YP_001273006.1| - 1.2 8.8 13.2 0.17 11.6 6.2 1.7 2 0 0 2 2 2 0 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 ATP-synt_ab PF00006.20 gi|148642494|ref|YP_001273007.1| - 6.1e-62 208.9 0.0 8.7e-62 208.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|148642494|ref|YP_001273007.1| - 4.3e-16 59.3 0.3 8e-16 58.5 0.2 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|148642494|ref|YP_001273007.1| - 3.6e-12 46.3 3.0 7.3e-12 45.3 2.1 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|148642494|ref|YP_001273007.1| - 0.00042 20.1 1.4 0.0011 18.8 1.0 1.7 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|148642495|ref|YP_001273008.1| - 1.6e-92 308.8 0.0 2.8e-92 308.0 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|148642495|ref|YP_001273008.1| - 1.8e-20 73.4 0.5 4.4e-20 72.2 0.4 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|148642495|ref|YP_001273008.1| - 3.5e-14 52.7 3.4 3.5e-14 52.7 2.4 2.0 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|148642495|ref|YP_001273008.1| - 0.017 15.2 0.0 0.042 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP-synt_F PF01990.12 gi|148642496|ref|YP_001273009.1| - 5e-27 94.1 1.4 5.6e-27 93.9 1.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.11 gi|148642497|ref|YP_001273010.1| - 2.6e-85 286.5 4.6 3.1e-85 286.2 3.2 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit PCI_Csn8 PF10075.4 gi|148642497|ref|YP_001273010.1| - 0.012 15.4 0.0 0.07 12.8 0.0 2.1 2 0 0 2 2 2 0 COP9 signalosome, subunit CSN8 MerR_1 PF13411.1 gi|148642497|ref|YP_001273010.1| - 0.095 12.4 1.7 9.2 6.1 0.0 3.5 4 0 0 4 4 4 0 MerR HTH family regulatory protein vATP-synt_E PF01991.13 gi|148642498|ref|YP_001273011.1| - 1.6e-46 158.0 14.4 1.8e-46 157.9 10.0 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit FliH PF02108.11 gi|148642498|ref|YP_001273011.1| - 0.00092 19.0 3.6 0.001 18.9 0.3 2.4 2 1 0 2 2 2 1 Flagellar assembly protein FliH ATP-synt_B PF00430.13 gi|148642498|ref|YP_001273011.1| - 0.48 10.2 25.1 0.13 12.0 3.2 3.1 1 1 2 3 3 3 0 ATP synthase B/B' CF(0) Apolipoprotein PF01442.13 gi|148642498|ref|YP_001273011.1| - 0.57 9.6 7.5 3.9 6.9 4.8 2.1 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain AXH PF08517.7 gi|148642498|ref|YP_001273011.1| - 0.59 10.3 5.3 10 6.3 1.3 2.3 2 0 0 2 2 2 0 Ataxin-1 and HBP1 module (AXH) DUF334 PF03904.8 gi|148642498|ref|YP_001273011.1| - 1.5 8.1 8.3 2 7.6 5.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF334) DivIVA PF05103.8 gi|148642498|ref|YP_001273011.1| - 1.9 8.5 18.2 1.4 8.9 6.0 2.5 1 1 1 2 2 2 0 DivIVA protein HrpE PF06188.7 gi|148642498|ref|YP_001273011.1| - 5.8 6.6 11.1 1.7 8.3 4.7 1.9 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_C PF00137.16 gi|148642499|ref|YP_001273012.1| - 1.8e-39 133.4 35.8 4.1e-20 71.4 10.1 2.2 2 0 0 2 2 2 2 ATP synthase subunit C SelB-wing_1 PF09105.5 gi|148642499|ref|YP_001273012.1| - 0.085 12.5 0.1 0.59 9.8 0.0 2.0 2 0 0 2 2 2 0 Elongation factor SelB, winged helix KRTAP PF11759.3 gi|148642499|ref|YP_001273012.1| - 0.45 10.7 10.7 4 7.7 0.4 2.3 2 0 0 2 2 2 0 Keratin-associated matrix V_ATPase_I PF01496.14 gi|148642500|ref|YP_001273013.1| - 4.4e-111 372.0 20.5 1e-78 265.0 4.9 2.6 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family Peptidase_C25 PF01364.13 gi|148642500|ref|YP_001273013.1| - 0.092 11.6 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family C25 IncA PF04156.9 gi|148642500|ref|YP_001273013.1| - 0.18 11.3 0.1 0.18 11.3 0.0 5.5 7 1 0 7 7 7 0 IncA protein V-ATPase_G PF03179.10 gi|148642501|ref|YP_001273014.1| - 0.0015 18.8 14.9 0.0016 18.6 10.3 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.13 gi|148642501|ref|YP_001273014.1| - 0.0023 17.7 20.9 0.019 14.7 13.7 1.9 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) HrpE PF06188.7 gi|148642501|ref|YP_001273014.1| - 0.0049 16.6 6.5 0.0098 15.6 4.4 1.5 1 1 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF1657 PF07870.6 gi|148642501|ref|YP_001273014.1| - 0.028 14.0 0.6 0.077 12.6 0.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1657) DivIVA PF05103.8 gi|148642501|ref|YP_001273014.1| - 0.062 13.3 14.4 0.27 11.2 10.0 1.8 1 1 0 1 1 1 0 DivIVA protein Tubulin PF00091.20 gi|148642501|ref|YP_001273014.1| - 0.068 12.9 2.8 0.1 12.3 1.7 1.5 1 1 1 2 2 2 0 Tubulin/FtsZ family, GTPase domain DUF883 PF05957.8 gi|148642501|ref|YP_001273014.1| - 0.17 12.2 7.7 1.2 9.6 3.5 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Vps52 PF04129.7 gi|148642501|ref|YP_001273014.1| - 0.52 8.7 5.4 0.57 8.6 3.7 1.1 1 0 0 1 1 1 0 Vps52 / Sac2 family HSP9_HSP12 PF04119.7 gi|148642501|ref|YP_001273014.1| - 0.53 10.3 4.6 0.33 11.0 1.2 2.0 1 1 1 2 2 2 0 Heat shock protein 9/12 eIF3_N PF09440.5 gi|148642501|ref|YP_001273014.1| - 1 9.5 6.6 1.3 9.1 4.6 1.3 1 1 0 1 1 1 0 eIF3 subunit 6 N terminal domain DUF3552 PF12072.3 gi|148642501|ref|YP_001273014.1| - 1.1 8.4 20.4 1.1 8.4 10.3 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) HAUS-augmin3 PF14932.1 gi|148642501|ref|YP_001273014.1| - 1.3 8.1 7.9 1.5 7.9 5.5 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Gram_pos_anchor PF00746.16 gi|148642502|ref|YP_001273015.1| - 0.16 11.7 8.1 2.9 7.8 0.3 3.2 3 0 0 3 3 3 0 Gram positive anchor DUF1430 PF07242.6 gi|148642502|ref|YP_001273015.1| - 0.47 10.5 12.7 0.13 12.3 1.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1430) DUF308 PF03729.8 gi|148642502|ref|YP_001273015.1| - 0.88 9.6 20.3 0.24 11.4 9.9 2.1 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF2178 PF09946.4 gi|148642502|ref|YP_001273015.1| - 8.1 6.2 14.9 7 6.4 3.6 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2178) TRAP-gamma PF07074.7 gi|148642504|ref|YP_001273017.1| - 0.0012 18.3 0.4 0.0015 18.0 0.3 1.1 1 0 0 1 1 1 1 Translocon-associated protein, gamma subunit (TRAP-gamma) Rav1p_C PF12234.3 gi|148642504|ref|YP_001273017.1| - 0.0031 15.7 1.2 0.004 15.3 0.8 1.1 1 0 0 1 1 1 1 RAVE protein 1 C terminal MpPF26 PF07666.6 gi|148642504|ref|YP_001273017.1| - 0.063 13.1 0.3 0.095 12.5 0.2 1.3 1 0 0 1 1 1 0 M penetrans paralogue family 26 PIG-P PF08510.7 gi|148642504|ref|YP_001273017.1| - 0.11 12.1 2.3 0.12 11.9 1.5 1.3 1 1 0 1 1 1 0 PIG-P Nitroreductase PF00881.19 gi|148642505|ref|YP_001273018.1| - 6.9e-30 104.0 0.0 9.2e-30 103.6 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|148642505|ref|YP_001273018.1| - 0.023 13.8 0.0 4.1 6.5 0.0 2.6 2 1 0 2 2 2 0 Putative TM nitroreductase Citrate_synt PF00285.16 gi|148642506|ref|YP_001273019.1| - 1.6e-37 129.0 0.0 4.5e-31 107.8 0.0 2.0 1 1 1 2 2 2 2 Citrate synthase DUF3506 PF12014.3 gi|148642506|ref|YP_001273019.1| - 0.069 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3506) Fumerase PF05681.9 gi|148642507|ref|YP_001273020.1| - 1.5e-69 234.1 0.0 1.7e-69 233.9 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Peptidase_U32 PF01136.14 gi|148642508|ref|YP_001273021.1| - 0.0002 20.3 0.0 0.00051 19.0 0.0 1.7 1 0 0 1 1 1 1 Peptidase family U32 MmgE_PrpD PF03972.9 gi|148642509|ref|YP_001273022.1| - 4.5e-95 318.4 0.0 6.9e-95 317.8 0.0 1.2 1 1 0 1 1 1 1 MmgE/PrpD family DUF340 PF03956.8 gi|148642510|ref|YP_001273023.1| - 0.001 18.4 2.9 0.001 18.4 2.0 2.2 1 1 1 2 2 2 1 Membrane protein of unknown function (DUF340) DUF2231 PF09990.4 gi|148642510|ref|YP_001273023.1| - 0.04 14.2 2.1 0.04 14.2 1.5 2.5 1 1 2 3 3 3 0 Predicted membrane protein (DUF2231) UPF0104 PF03706.8 gi|148642510|ref|YP_001273023.1| - 2.9 7.1 15.9 0.66 9.1 0.7 2.7 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0104) Tmemb_18A PF09771.4 gi|148642510|ref|YP_001273023.1| - 3.3 7.7 6.2 1.2 9.0 1.3 2.1 2 1 0 2 2 2 0 Transmembrane protein 188 MerC PF03203.9 gi|148642510|ref|YP_001273023.1| - 3.6 7.9 12.7 2e+02 2.3 8.8 2.1 1 1 0 1 1 1 0 MerC mercury resistance protein DUF3100 PF11299.3 gi|148642511|ref|YP_001273024.1| - 1.6e-91 305.8 15.1 1.9e-91 305.5 10.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3100) DUF3671 PF12420.3 gi|148642511|ref|YP_001273024.1| - 0.88 9.5 9.8 53 3.8 6.9 3.1 1 1 0 1 1 1 0 Protein of unknown function DUF1743 PF08489.6 gi|148642512|ref|YP_001273025.1| - 2.1e-41 140.3 0.1 7.6e-41 138.5 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|148642512|ref|YP_001273025.1| - 3.7e-06 26.6 0.4 2.6e-05 23.9 0.1 2.3 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|148642512|ref|YP_001273025.1| - 0.23 11.1 2.3 0.7 9.5 1.6 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_3 PF01381.17 gi|148642513|ref|YP_001273026.1| - 8.2e-09 35.1 0.6 1.8e-08 34.0 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|148642513|ref|YP_001273026.1| - 7.5e-06 25.9 2.7 6.6e-05 22.8 0.1 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|148642513|ref|YP_001273026.1| - 1.4e-05 25.2 0.0 2.8e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|148642513|ref|YP_001273026.1| - 0.087 12.4 0.0 0.6 9.8 0.0 2.5 2 0 0 2 2 2 0 HTH domain HTH_17 PF12728.2 gi|148642513|ref|YP_001273026.1| - 0.097 12.9 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.18 gi|148642513|ref|YP_001273026.1| - 0.1 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family GP41 PF00517.12 gi|148642514|ref|YP_001273027.1| - 0.044 13.3 0.2 0.057 12.9 0.1 1.2 1 0 0 1 1 1 0 Retroviral envelope protein Glycolytic PF00274.14 gi|148642514|ref|YP_001273027.1| - 0.13 10.6 0.0 0.14 10.5 0.0 1.1 1 0 0 1 1 1 0 Fructose-bisphosphate aldolase class-I YbjQ_1 PF01906.12 gi|148642516|ref|YP_001273029.1| - 2.7e-35 120.9 0.2 3.3e-35 120.6 0.2 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.3 gi|148642516|ref|YP_001273029.1| - 1.2e-06 28.5 0.2 0.0041 17.2 0.1 2.2 2 0 0 2 2 2 2 Selenium binding protein Hjc PF01870.13 gi|148642516|ref|YP_001273029.1| - 0.046 13.3 0.0 0.057 13.0 0.0 1.4 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Phage_connect_1 PF05135.8 gi|148642516|ref|YP_001273029.1| - 0.048 13.8 0.0 0.062 13.4 0.0 1.2 1 0 0 1 1 1 0 Phage gp6-like head-tail connector protein 2-Hacid_dh_C PF02826.14 gi|148642517|ref|YP_001273030.1| - 1.8e-65 219.4 0.0 2.9e-65 218.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|148642517|ref|YP_001273030.1| - 1.8e-40 137.4 1.6 1.8e-40 137.4 1.1 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|148642517|ref|YP_001273030.1| - 2e-08 33.5 0.1 1.1e-07 31.2 0.0 2.3 2 0 0 2 2 2 1 ACT domain NAD_binding_2 PF03446.10 gi|148642517|ref|YP_001273030.1| - 5.4e-05 23.0 0.3 0.00016 21.5 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.10 gi|148642517|ref|YP_001273030.1| - 0.0054 16.8 1.9 0.023 14.8 0.0 2.9 4 0 0 4 4 4 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|148642517|ref|YP_001273030.1| - 0.016 15.5 1.3 0.36 11.2 0.0 3.2 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_4 PF01565.18 gi|148642517|ref|YP_001273030.1| - 0.054 12.9 0.0 3.4 7.1 0.0 2.3 2 0 0 2 2 2 0 FAD binding domain DUF3420 PF11900.3 gi|148642517|ref|YP_001273030.1| - 0.074 13.1 0.5 0.49 10.5 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3420) HTH_29 PF13551.1 gi|148642518|ref|YP_001273031.1| - 1.6e-16 60.4 0.0 2.1e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|148642518|ref|YP_001273031.1| - 9.3e-11 41.0 0.1 3.6e-10 39.1 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|148642518|ref|YP_001273031.1| - 5.7e-10 39.0 0.0 1.7e-09 37.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.1 gi|148642518|ref|YP_001273031.1| - 2.4e-08 34.6 0.0 5.9e-08 33.3 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_33 PF13592.1 gi|148642518|ref|YP_001273031.1| - 2.7e-07 30.0 0.0 5.6e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix LZ_Tnp_IS481 PF13011.1 gi|148642518|ref|YP_001273031.1| - 2.5e-06 27.7 0.0 5.5e-06 26.6 0.0 1.6 2 0 0 2 2 2 1 leucine-zipper of insertion element IS481 HTH_38 PF13936.1 gi|148642518|ref|YP_001273031.1| - 9.4e-05 21.8 0.0 0.0011 18.4 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|148642518|ref|YP_001273031.1| - 9.5e-05 22.5 0.0 0.0002 21.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|148642518|ref|YP_001273031.1| - 0.0007 18.7 0.0 0.016 14.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_IS630 PF01710.11 gi|148642518|ref|YP_001273031.1| - 0.0013 18.3 0.1 0.0019 17.8 0.1 1.3 1 0 0 1 1 1 1 Transposase NUMOD1 PF07453.8 gi|148642518|ref|YP_001273031.1| - 0.074 12.9 1.1 0.36 10.7 0.0 2.5 3 0 0 3 3 3 0 NUMOD1 domain MerR_1 PF13411.1 gi|148642518|ref|YP_001273031.1| - 0.074 12.8 0.0 0.48 10.2 0.0 2.3 1 1 1 2 2 2 0 MerR HTH family regulatory protein DDE_3 PF13358.1 gi|148642520|ref|YP_001273033.1| - 7e-19 68.0 0.7 1.2e-18 67.2 0.5 1.5 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_1 PF03184.14 gi|148642520|ref|YP_001273033.1| - 3e-06 26.5 1.2 3e-06 26.5 0.8 2.2 1 1 1 2 2 2 1 DDE superfamily endonuclease rve PF00665.21 gi|148642520|ref|YP_001273033.1| - 0.0024 17.9 0.0 0.0043 17.1 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain Tox-HDC PF15656.1 gi|148642520|ref|YP_001273033.1| - 0.12 12.5 1.0 0.43 10.7 0.1 1.9 2 0 0 2 2 2 0 Toxin with a H, D/N and C signature DDE_Tnp_IS1595 PF12762.2 gi|148642520|ref|YP_001273033.1| - 0.4 10.5 2.8 4.9 6.9 0.0 2.9 2 1 1 3 3 3 0 ISXO2-like transposase domain DUF4399 PF14347.1 gi|148642521|ref|YP_001273034.1| - 4.8e-24 84.1 7.7 4.9e-07 29.6 0.1 4.8 3 2 2 5 5 5 4 Domain of unknown function (DUF4399) Pentapeptide_4 PF13599.1 gi|148642521|ref|YP_001273034.1| - 2.8 7.8 56.7 1 9.2 3.5 6.6 4 1 1 5 5 5 0 Pentapeptide repeats (9 copies) Prok-JAB PF14464.1 gi|148642522|ref|YP_001273035.1| - 3.6e-13 48.9 0.0 5e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|148642522|ref|YP_001273035.1| - 6.9e-05 22.5 0.1 0.00019 21.1 0.0 1.8 2 1 0 2 2 2 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Thg1 PF04446.7 gi|148642523|ref|YP_001273036.1| - 5.1e-34 116.7 0.1 8.5e-34 116.0 0.0 1.3 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.1 gi|148642523|ref|YP_001273036.1| - 3e-25 88.2 3.4 3.9e-25 87.8 2.4 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain DUF108 PF01958.13 gi|148642524|ref|YP_001273037.1| - 1.8e-33 114.6 0.2 3e-33 113.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|148642524|ref|YP_001273037.1| - 1.5e-19 70.5 0.0 2.6e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|148642524|ref|YP_001273037.1| - 2.7e-06 27.2 0.6 1.6e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|148642524|ref|YP_001273037.1| - 1.1e-05 25.9 0.0 2.3e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|148642524|ref|YP_001273037.1| - 2e-05 24.8 0.2 0.00011 22.4 0.0 1.9 1 1 1 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|148642524|ref|YP_001273037.1| - 3.1e-05 24.3 0.5 0.00018 21.8 0.0 2.2 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Gp_dh_N PF00044.19 gi|148642524|ref|YP_001273037.1| - 0.011 15.6 0.6 5.8 6.8 0.0 2.9 2 1 0 3 3 3 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|148642524|ref|YP_001273037.1| - 0.046 12.8 0.0 0.074 12.2 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PRC PF05239.11 gi|148642525|ref|YP_001273038.1| - 5.5e-08 32.5 0.8 3.1e-07 30.1 0.6 1.9 1 1 0 1 1 1 1 PRC-barrel domain Sec10 PF07393.6 gi|148642525|ref|YP_001273038.1| - 0.062 11.4 0.0 0.079 11.1 0.0 1.1 1 0 0 1 1 1 0 Exocyst complex component Sec10 DUF4546 PF15079.1 gi|148642525|ref|YP_001273038.1| - 0.12 11.5 0.9 0.18 10.9 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4546) tRNA_bind PF01588.15 gi|148642526|ref|YP_001273039.1| - 3.4e-16 58.8 0.1 5.7e-16 58.1 0.1 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain Aldedh PF00171.17 gi|148642527|ref|YP_001273040.1| - 8.9e-161 535.3 2.5 1.1e-160 535.0 1.7 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|148642527|ref|YP_001273040.1| - 2.7e-05 23.0 0.0 5.7e-05 22.0 0.0 1.4 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) DUF1487 PF07368.6 gi|148642527|ref|YP_001273040.1| - 0.06 12.5 0.1 0.14 11.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) DUF1211 PF06736.6 gi|148642528|ref|YP_001273041.1| - 1.1e-22 79.9 5.9 1.1e-22 79.9 4.1 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF1211) DUF1211 PF06736.6 gi|148642529|ref|YP_001273042.1| - 2.7e-22 78.7 2.9 2.7e-22 78.7 2.0 2.6 2 1 1 3 3 3 1 Protein of unknown function (DUF1211) Class_IIIsignal PF04021.7 gi|148642530|ref|YP_001273043.1| - 1.4e-09 37.2 1.4 2e-09 36.8 0.9 1.2 1 0 0 1 1 1 1 Class III signal peptide Baculo_11_kDa PF06143.6 gi|148642530|ref|YP_001273043.1| - 0.013 14.8 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 0 Baculovirus 11 kDa family PsbJ PF01788.12 gi|148642530|ref|YP_001273043.1| - 0.032 13.7 0.3 0.035 13.6 0.2 1.2 1 0 0 1 1 1 0 PsbJ T2SF PF00482.18 gi|148642531|ref|YP_001273044.1| - 1.6e-17 63.5 2.4 1.6e-17 63.5 1.7 2.5 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F Rer1 PF03248.8 gi|148642531|ref|YP_001273044.1| - 0.023 14.2 1.0 0.05 13.1 0.7 1.6 1 0 0 1 1 1 0 Rer1 family 7tm_1 PF00001.16 gi|148642531|ref|YP_001273044.1| - 0.045 12.8 2.5 1 8.4 0.9 2.3 1 1 1 2 2 2 0 7 transmembrane receptor (rhodopsin family) DUF3529 PF12046.3 gi|148642531|ref|YP_001273044.1| - 0.055 12.4 0.8 0.97 8.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3529) Pox_polyA_pol PF03296.8 gi|148642531|ref|YP_001273044.1| - 1.5 8.3 5.4 28 4.2 3.8 2.5 1 1 0 1 1 1 0 Poxvirus poly(A) polymerase nucleotidyltransferase domain Peptidase_M24 PF00557.19 gi|148642532|ref|YP_001273045.1| - 2.5e-55 187.3 0.1 3.4e-55 186.8 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|148642532|ref|YP_001273045.1| - 3.2e-11 43.8 0.0 5.5e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Thioredoxin_7 PF13899.1 gi|148642532|ref|YP_001273045.1| - 0.13 12.3 0.0 0.34 10.9 0.0 1.7 1 0 0 1 1 1 0 Thioredoxin-like LHC PF00556.15 gi|148642533|ref|YP_001273046.1| - 0.82 9.5 4.4 17 5.3 0.1 3.0 2 0 0 2 2 2 0 Antenna complex alpha/beta subunit DUF4131 PF13567.1 gi|148642533|ref|YP_001273046.1| - 1.1 8.6 13.8 9.3e+02 -0.9 9.3 3.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) RseC_MucC PF04246.7 gi|148642533|ref|YP_001273046.1| - 2.4 7.7 6.2 18 4.9 0.2 3.1 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC DUF2700 PF10912.3 gi|148642536|ref|YP_001273049.1| - 0.0054 16.7 3.9 0.006 16.5 2.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2700) Oxidored_q5_N PF01059.12 gi|148642536|ref|YP_001273049.1| - 0.19 11.6 5.8 0.23 11.3 4.1 1.1 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus Abi PF02517.11 gi|148642536|ref|YP_001273049.1| - 0.42 10.7 4.6 0.51 10.4 3.1 1.4 1 1 0 1 1 1 0 CAAX protease self-immunity HR_lesion PF05514.6 gi|148642536|ref|YP_001273049.1| - 0.45 10.3 4.9 0.48 10.2 3.4 1.2 1 0 0 1 1 1 0 HR-like lesion-inducing DUF4131 PF13567.1 gi|148642536|ref|YP_001273049.1| - 0.46 9.8 2.4 0.49 9.7 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) SID-1_RNA_chan PF13965.1 gi|148642536|ref|YP_001273049.1| - 1.8 6.6 8.1 1.8 6.6 5.6 1.0 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 Arc_PepC_II PF06847.6 gi|148642536|ref|YP_001273049.1| - 2.1 8.8 5.0 0.48 10.8 1.0 1.8 1 1 1 2 2 2 0 Archaeal Peptidase A24 C-terminus Type II RseC_MucC PF04246.7 gi|148642536|ref|YP_001273049.1| - 5 6.7 5.1 6.1 6.4 0.2 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF3671 PF12420.3 gi|148642536|ref|YP_001273049.1| - 6.3 6.8 10.8 21 5.1 7.5 1.8 1 1 0 1 1 1 0 Protein of unknown function YoqO PF14037.1 gi|148642538|ref|YP_001273051.1| - 0.078 13.1 6.5 0.12 12.5 4.5 1.3 1 1 0 1 1 1 0 YoqO-like protein Pox_A14 PF05767.7 gi|148642538|ref|YP_001273051.1| - 0.28 11.1 3.7 0.23 11.4 1.7 1.5 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 DUF3792 PF12670.2 gi|148642538|ref|YP_001273051.1| - 0.28 11.0 4.2 0.35 10.7 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) Abi PF02517.11 gi|148642538|ref|YP_001273051.1| - 1.1 9.4 6.7 0.14 12.2 1.5 1.6 1 1 0 2 2 2 0 CAAX protease self-immunity Peptidase_M50 PF02163.17 gi|148642539|ref|YP_001273052.1| - 9.7e-13 47.5 15.6 1.1e-11 44.0 10.8 2.1 1 1 0 1 1 1 1 Peptidase family M50 Reprolysin_2 PF13574.1 gi|148642539|ref|YP_001273052.1| - 0.18 11.8 0.1 0.26 11.3 0.1 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF3981 PF13139.1 gi|148642539|ref|YP_001273052.1| - 1.5 8.8 5.9 0.36 10.8 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3981) YcaO PF02624.11 gi|148642540|ref|YP_001273053.1| - 6.3e-90 302.0 0.0 8.9e-90 301.5 0.0 1.2 1 0 0 1 1 1 1 YcaO-like family TfuA PF07812.7 gi|148642541|ref|YP_001273054.1| - 1.8e-46 156.4 0.1 2.9e-46 155.7 0.1 1.3 1 0 0 1 1 1 1 TfuA-like protein NAD_binding_4 PF07993.7 gi|148642541|ref|YP_001273054.1| - 0.04 12.8 0.0 0.057 12.3 0.0 1.3 1 0 0 1 1 1 0 Male sterility protein ATP_bind_3 PF01171.15 gi|148642542|ref|YP_001273055.1| - 2.3e-07 30.4 0.0 9.6e-07 28.4 0.0 1.9 2 0 0 2 2 2 1 PP-loop family Asn_synthase PF00733.16 gi|148642542|ref|YP_001273055.1| - 9.8e-07 28.5 0.0 1.7e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|148642542|ref|YP_001273055.1| - 1.2e-05 24.3 0.0 3.5e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 NAD synthase QueC PF06508.8 gi|148642542|ref|YP_001273055.1| - 1.3e-05 24.5 0.0 0.00013 21.3 0.0 2.4 2 1 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|148642542|ref|YP_001273055.1| - 0.012 15.0 0.1 0.049 13.0 0.0 2.0 2 1 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|148642542|ref|YP_001273055.1| - 0.013 15.3 0.0 0.17 11.6 0.0 2.3 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family SID PF11778.3 gi|148642542|ref|YP_001273055.1| - 0.037 13.9 2.7 0.16 11.8 0.6 2.7 2 1 0 2 2 2 0 Septation initiation Ish1 PF10281.4 gi|148642542|ref|YP_001273055.1| - 0.044 13.8 0.1 0.44 10.6 0.0 2.6 3 0 0 3 3 3 0 Putative stress-responsive nuclear envelope protein UPF0270 PF06794.7 gi|148642542|ref|YP_001273055.1| - 0.096 12.4 0.0 0.37 10.5 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0270) Stk19 PF10494.4 gi|148642542|ref|YP_001273055.1| - 0.15 11.3 3.4 0.16 11.3 1.0 2.0 2 1 0 2 2 2 0 Serine-threonine protein kinase 19 DUF1398 PF07166.6 gi|148642542|ref|YP_001273055.1| - 0.85 9.5 4.4 0.23 11.3 0.3 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1398) Ribosomal_S8 PF00410.14 gi|148642542|ref|YP_001273055.1| - 2.7 7.8 6.3 21 4.9 0.6 3.3 3 1 0 3 3 3 0 Ribosomal protein S8 Alg6_Alg8 PF03155.10 gi|148642543|ref|YP_001273056.1| - 0.019 13.8 0.0 0.022 13.5 0.0 1.1 1 0 0 1 1 1 0 ALG6, ALG8 glycosyltransferase family CBS PF00571.23 gi|148642544|ref|YP_001273057.1| - 1.2e-44 149.8 10.0 2.9e-17 62.1 0.8 4.1 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.9 gi|148642544|ref|YP_001273057.1| - 0.0051 16.8 0.5 0.78 9.8 0.0 3.5 4 0 0 4 4 4 1 Ribosomal protein L9, C-terminal domain Peptidase_C97 PF05903.9 gi|148642544|ref|YP_001273057.1| - 0.067 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 PPPDE putative peptidase domain Usp PF00582.21 gi|148642545|ref|YP_001273058.1| - 5.1e-36 123.9 0.0 5.8e-36 123.7 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.15 gi|148642546|ref|YP_001273059.1| - 3.2e-18 66.4 0.0 5.5e-18 65.7 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|148642546|ref|YP_001273059.1| - 1.8e-08 34.0 1.3 3.1e-08 33.2 0.4 1.8 2 0 0 2 2 2 1 Amidohydrolase zinc_ribbon_2 PF13240.1 gi|148642547|ref|YP_001273060.1| - 6.2e-05 22.3 4.0 0.00013 21.3 2.8 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148642547|ref|YP_001273060.1| - 0.00017 21.3 0.6 0.00028 20.6 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|148642547|ref|YP_001273060.1| - 0.0012 17.9 1.1 0.0022 17.1 0.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|148642547|ref|YP_001273060.1| - 0.0019 17.8 2.2 0.003 17.2 1.5 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-C3HC4_3 PF13920.1 gi|148642547|ref|YP_001273060.1| - 0.005 16.4 1.8 0.0083 15.7 1.3 1.3 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) PX PF00787.19 gi|148642547|ref|YP_001273060.1| - 0.0081 15.9 2.6 0.028 14.1 1.8 1.9 1 1 0 1 1 1 1 PX domain zinc-ribbons_6 PF07191.7 gi|148642547|ref|YP_001273060.1| - 0.041 13.6 1.0 0.096 12.4 0.7 1.6 1 0 0 1 1 1 0 zinc-ribbons zf-RING_5 PF14634.1 gi|148642547|ref|YP_001273060.1| - 0.38 10.5 3.4 0.65 9.7 2.3 1.4 1 0 0 1 1 1 0 zinc-RING finger domain zf-C3HC4_2 PF13923.1 gi|148642547|ref|YP_001273060.1| - 0.86 9.6 4.0 1.5 8.9 2.8 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) CPSase_L_D2 PF02786.12 gi|148642548|ref|YP_001273061.1| - 9.5e-117 387.7 0.2 4.2e-76 254.9 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|148642548|ref|YP_001273061.1| - 6.8e-47 158.1 0.0 6.4e-23 80.9 0.0 2.7 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|148642548|ref|YP_001273061.1| - 4.2e-44 149.2 1.1 9.8e-44 148.0 0.8 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|148642548|ref|YP_001273061.1| - 5.5e-39 133.7 0.5 6.1e-19 68.4 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|148642548|ref|YP_001273061.1| - 4.2e-30 104.6 0.0 1.8e-11 43.4 0.0 4.0 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|148642548|ref|YP_001273061.1| - 1e-18 67.3 0.4 2.2e-09 36.9 0.0 2.6 3 0 0 3 3 3 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|148642548|ref|YP_001273061.1| - 5.1e-17 61.9 0.6 1.8e-08 34.0 0.0 2.7 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus MGS PF02142.17 gi|148642548|ref|YP_001273061.1| - 8.9e-17 60.8 0.2 1.5e-15 56.8 0.1 2.9 2 0 0 2 2 2 1 MGS-like domain ATP-grasp_3 PF02655.9 gi|148642548|ref|YP_001273061.1| - 9e-12 45.1 0.6 4.1e-05 23.4 0.1 2.6 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.14 gi|148642548|ref|YP_001273061.1| - 1.8e-10 40.7 0.3 2.4e-05 23.9 0.0 2.6 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|148642548|ref|YP_001273061.1| - 0.011 14.9 0.0 5.2 6.2 0.0 2.5 2 0 0 2 2 2 0 ATP-grasp domain DUF4444 PF14563.1 gi|148642548|ref|YP_001273061.1| - 0.052 12.9 0.1 0.16 11.3 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4444) CPSase_sm_chain PF00988.17 gi|148642549|ref|YP_001273062.1| - 1.5e-49 166.8 0.0 2.3e-49 166.2 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|148642549|ref|YP_001273062.1| - 1.2e-42 145.5 0.0 1.6e-42 145.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|148642549|ref|YP_001273062.1| - 1.4e-05 24.6 0.1 0.022 14.1 0.0 2.5 1 1 1 2 2 2 2 Peptidase C26 Methyltransf_18 PF12847.2 gi|148642550|ref|YP_001273063.1| - 3.1e-18 66.4 0.0 5.1e-18 65.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|148642550|ref|YP_001273063.1| - 1.1e-17 64.0 0.3 1.4e-17 63.6 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|148642550|ref|YP_001273063.1| - 4.7e-16 59.0 0.1 7.9e-16 58.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|148642550|ref|YP_001273063.1| - 3.5e-13 49.8 0.0 5.6e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|148642550|ref|YP_001273063.1| - 2.3e-12 46.6 0.0 3e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|148642550|ref|YP_001273063.1| - 3.4e-11 43.3 0.0 5.3e-11 42.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148642550|ref|YP_001273063.1| - 1.1e-09 38.2 0.0 1.5e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|148642550|ref|YP_001273063.1| - 3e-08 33.0 0.1 3.5e-08 32.8 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|148642550|ref|YP_001273063.1| - 4.4e-07 29.9 0.0 6.8e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|148642550|ref|YP_001273063.1| - 1e-06 27.9 0.0 1.4e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|148642550|ref|YP_001273063.1| - 4.1e-05 22.7 0.0 5.6e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|148642550|ref|YP_001273063.1| - 0.00013 21.4 0.0 0.00018 20.9 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_2 PF00891.13 gi|148642550|ref|YP_001273063.1| - 0.00016 20.9 0.0 0.00021 20.5 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_16 PF10294.4 gi|148642550|ref|YP_001273063.1| - 0.0011 18.4 0.0 0.0016 17.8 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase FtsJ PF01728.14 gi|148642550|ref|YP_001273063.1| - 0.0016 18.4 0.0 0.0026 17.7 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase PrmA PF06325.8 gi|148642550|ref|YP_001273063.1| - 0.0035 16.5 0.0 0.0043 16.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_PK PF05891.7 gi|148642550|ref|YP_001273063.1| - 0.0065 15.7 0.0 0.0094 15.2 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase PCMT PF01135.14 gi|148642550|ref|YP_001273063.1| - 0.0086 15.6 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GidB PF02527.10 gi|148642550|ref|YP_001273063.1| - 0.016 14.3 0.0 0.024 13.7 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_32 PF13679.1 gi|148642550|ref|YP_001273063.1| - 0.016 14.8 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_5 PF01795.14 gi|148642550|ref|YP_001273063.1| - 0.027 13.7 0.0 0.037 13.3 0.0 1.2 1 0 0 1 1 1 0 MraW methylase family TehB PF03848.9 gi|148642550|ref|YP_001273063.1| - 0.074 12.2 0.2 0.14 11.2 0.1 1.3 1 1 0 1 1 1 0 Tellurite resistance protein TehB QRPTase_C PF01729.14 gi|148642551|ref|YP_001273064.1| - 1.8e-54 183.8 0.5 2.3e-54 183.4 0.3 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|148642551|ref|YP_001273064.1| - 1.4e-27 95.3 0.1 3.3e-27 94.1 0.0 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain TGT PF01702.13 gi|148642551|ref|YP_001273064.1| - 0.0046 16.2 0.0 0.0078 15.5 0.0 1.4 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Lactamase_B_2 PF12706.2 gi|148642552|ref|YP_001273065.1| - 4.5e-29 101.3 0.0 6.9e-29 100.7 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|148642552|ref|YP_001273065.1| - 3.3e-14 52.9 0.0 1.9e-13 50.5 0.0 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|148642552|ref|YP_001273065.1| - 0.00022 20.5 0.0 0.00051 19.4 0.0 1.6 1 0 0 1 1 1 1 tRNase Z endonuclease MS_channel PF00924.13 gi|148642553|ref|YP_001273066.1| - 3.1e-40 137.7 8.6 3.1e-40 137.7 6.0 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel NadA PF02445.11 gi|148642554|ref|YP_001273067.1| - 2.3e-114 381.2 3.3 2.5e-114 381.0 2.3 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF1296 PF06972.6 gi|148642554|ref|YP_001273067.1| - 0.022 14.7 0.1 0.063 13.2 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1296) N_NLPC_P60 PF12912.2 gi|148642555|ref|YP_001273068.1| - 0.049 13.7 0.0 0.061 13.4 0.0 1.1 1 0 0 1 1 1 0 NLPC_P60 stabilising domain, N term STAT_bind PF02864.10 gi|148642555|ref|YP_001273068.1| - 0.058 12.9 0.1 0.07 12.7 0.0 1.1 1 0 0 1 1 1 0 STAT protein, DNA binding domain Abhydrolase_1 PF00561.15 gi|148642556|ref|YP_001273069.1| - 9.6e-11 41.6 0.0 2.7e-09 36.9 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|148642556|ref|YP_001273069.1| - 2.6e-07 30.7 0.0 3.5e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|148642556|ref|YP_001273069.1| - 7.2e-05 22.3 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Putative esterase Abhydrolase_5 PF12695.2 gi|148642556|ref|YP_001273069.1| - 0.00011 22.0 0.0 0.00062 19.5 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF2920 PF11144.3 gi|148642556|ref|YP_001273069.1| - 0.012 14.6 0.1 0.018 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) Recep_L_domain PF01030.19 gi|148642556|ref|YP_001273069.1| - 0.019 14.9 0.1 0.033 14.1 0.1 1.4 1 0 0 1 1 1 0 Receptor L domain Peptidase_S9 PF00326.16 gi|148642556|ref|YP_001273069.1| - 0.019 14.1 0.0 0.032 13.4 0.0 1.4 1 0 0 1 1 1 0 Prolyl oligopeptidase family PGAP1 PF07819.8 gi|148642556|ref|YP_001273069.1| - 0.14 11.7 0.0 0.32 10.5 0.0 1.6 2 0 0 2 2 2 0 PGAP1-like protein DUF91 PF01939.11 gi|148642557|ref|YP_001273070.1| - 2.3e-85 285.3 0.4 3e-85 285.0 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 DUF1703 PF08011.6 gi|148642557|ref|YP_001273070.1| - 0.006 16.2 0.3 0.03 14.0 0.0 2.0 1 1 0 2 2 2 1 Protein of unknown function (DUF1703) zf-ribbon_3 PF13248.1 gi|148642559|ref|YP_001273072.1| - 2.2e-05 23.5 8.0 3.7e-05 22.7 5.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148642559|ref|YP_001273072.1| - 0.0002 20.7 8.8 0.00036 19.9 6.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148642559|ref|YP_001273072.1| - 0.0014 18.4 1.5 0.0022 17.7 1.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon PsbP PF01789.11 gi|148642559|ref|YP_001273072.1| - 0.013 14.9 0.1 0.029 13.8 0.0 1.7 2 0 0 2 2 2 0 PsbP DUF3805 PF12712.2 gi|148642559|ref|YP_001273072.1| - 0.032 14.0 0.5 0.05 13.4 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3805) RNA_POL_M_15KD PF02150.11 gi|148642559|ref|YP_001273072.1| - 0.063 12.9 4.4 0.91 9.2 3.0 2.3 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Phi-29_GP16_7 PF06720.6 gi|148642559|ref|YP_001273072.1| - 0.15 11.6 2.3 1.6 8.4 1.6 2.1 1 1 0 1 1 1 0 Bacteriophage phi-29 early protein GP16.7 FYDLN_acid PF09538.5 gi|148642559|ref|YP_001273072.1| - 0.42 11.2 2.2 0.82 10.2 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) UPF0547 PF10571.4 gi|148642559|ref|YP_001273072.1| - 1.8 8.3 9.2 18 5.1 6.4 2.3 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 CN_hydrolase PF00795.17 gi|148642560|ref|YP_001273073.1| - 7.8e-37 126.4 0.0 1.1e-36 125.8 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase HEAT_2 PF13646.1 gi|148642561|ref|YP_001273074.1| - 5.1e-26 90.7 0.5 2e-09 37.6 0.1 3.4 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.17 gi|148642561|ref|YP_001273074.1| - 3.5e-19 67.0 0.0 0.00011 21.9 0.0 4.3 4 0 0 4 4 4 4 HEAT repeat HEAT_EZ PF13513.1 gi|148642561|ref|YP_001273074.1| - 1.2e-12 47.8 0.2 0.065 13.7 0.0 4.3 4 0 0 4 4 4 4 HEAT-like repeat HEAT_PBS PF03130.11 gi|148642561|ref|YP_001273074.1| - 5e-12 45.0 0.0 0.035 14.5 0.0 5.0 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat Arm PF00514.18 gi|148642561|ref|YP_001273074.1| - 1.8e-05 24.3 0.0 4.2 7.3 0.0 3.6 3 0 0 3 3 3 3 Armadillo/beta-catenin-like repeat Vac14_Fab1_bd PF12755.2 gi|148642561|ref|YP_001273074.1| - 2e-05 24.8 0.0 0.0027 18.0 0.0 3.3 2 2 1 3 3 3 1 Vacuolar 14 Fab1-binding region Cnd1 PF12717.2 gi|148642561|ref|YP_001273074.1| - 0.012 15.4 0.0 1.7 8.4 0.0 3.2 2 1 0 2 2 2 0 non-SMC mitotic condensation complex subunit 1 DUF2435 PF10363.4 gi|148642561|ref|YP_001273074.1| - 0.03 14.1 0.0 4.8 7.1 0.0 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2435) bZIP_Maf PF03131.12 gi|148642561|ref|YP_001273074.1| - 0.78 10.0 4.2 1.2 9.5 2.4 1.8 1 1 0 1 1 1 0 bZIP Maf transcription factor DEAD_assoc PF08494.6 gi|148642562|ref|YP_001273075.1| - 1.3e-54 184.7 0.0 2.3e-54 183.9 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|148642562|ref|YP_001273075.1| - 1e-30 106.4 0.4 5.6e-30 104.0 0.1 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|148642562|ref|YP_001273075.1| - 8.9e-15 54.3 0.0 2.7e-13 49.5 0.0 2.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|148642562|ref|YP_001273075.1| - 5.4e-10 39.4 0.5 1.3e-09 38.1 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|148642562|ref|YP_001273075.1| - 0.00013 20.8 0.0 0.00026 19.8 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain T2SE PF00437.15 gi|148642562|ref|YP_001273075.1| - 0.0052 15.7 0.1 0.036 12.9 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein Flavodoxin_4 PF12682.2 gi|148642563|ref|YP_001273076.1| - 2e-18 66.2 0.1 2.8e-18 65.7 0.1 1.3 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|148642563|ref|YP_001273076.1| - 2.3e-07 30.3 0.3 0.00059 19.2 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|148642563|ref|YP_001273076.1| - 1.3e-06 28.4 0.1 0.0036 17.2 0.0 2.1 1 1 0 2 2 2 2 Flavodoxin domain FMN_red PF03358.10 gi|148642563|ref|YP_001273076.1| - 0.00085 18.8 0.0 0.0013 18.2 0.0 1.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|148642563|ref|YP_001273076.1| - 0.0017 18.3 0.1 0.17 11.8 0.0 2.3 1 1 1 2 2 2 1 Flavodoxin CGGC PF08821.6 gi|148642563|ref|YP_001273076.1| - 0.021 14.8 0.4 0.056 13.5 0.0 1.8 2 0 0 2 2 2 0 CGGC domain Flavodoxin_2 PF02525.12 gi|148642563|ref|YP_001273076.1| - 0.038 13.4 0.0 0.2 11.1 0.0 1.9 1 1 1 2 2 2 0 Flavodoxin-like fold Baculo_Y142 PF04913.7 gi|148642563|ref|YP_001273076.1| - 0.069 11.5 0.0 0.09 11.1 0.0 1.1 1 0 0 1 1 1 0 Baculovirus Y142 protein SBF PF01758.11 gi|148642564|ref|YP_001273077.1| - 0.093 12.1 9.1 0.19 11.1 6.2 1.5 1 1 0 1 1 1 0 Sodium Bile acid symporter family Tetraspannin PF00335.15 gi|148642565|ref|YP_001273078.1| - 0.00091 18.5 1.1 0.0012 18.2 0.8 1.1 1 0 0 1 1 1 1 Tetraspanin family DUF3397 PF11877.3 gi|148642565|ref|YP_001273078.1| - 0.056 13.4 0.3 0.084 12.8 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3397) O-antigen_lig PF13425.1 gi|148642565|ref|YP_001273078.1| - 0.058 13.3 11.3 0.4 10.6 7.8 1.9 1 1 0 1 1 1 0 O-antigen ligase like membrane protein DUF1129 PF06570.6 gi|148642565|ref|YP_001273078.1| - 0.081 12.2 0.4 0.13 11.5 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) DUF4199 PF13858.1 gi|148642565|ref|YP_001273078.1| - 0.43 10.4 5.6 0.14 12.0 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) Na_Ca_ex PF01699.19 gi|148642565|ref|YP_001273078.1| - 0.43 10.1 7.2 0.081 12.5 1.4 1.9 1 1 1 2 2 2 0 Sodium/calcium exchanger protein AzlD PF05437.7 gi|148642565|ref|YP_001273078.1| - 0.44 10.5 5.6 0.5 10.3 0.8 2.1 1 1 1 2 2 2 0 Branched-chain amino acid transport protein (AzlD) NfeD PF01957.13 gi|148642565|ref|YP_001273078.1| - 0.51 10.4 4.3 0.26 11.4 1.1 1.8 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding FtsX PF02687.16 gi|148642565|ref|YP_001273078.1| - 2.1 8.1 10.2 8.2 6.2 0.1 2.4 1 1 1 2 2 2 0 FtsX-like permease family ATP_synt_I PF03899.10 gi|148642565|ref|YP_001273078.1| - 3.3 7.9 11.0 0.69 10.1 4.8 1.9 1 1 1 2 2 2 0 ATP synthase I chain DUF4131 PF13567.1 gi|148642565|ref|YP_001273078.1| - 4 6.8 7.2 1.3 8.3 0.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Polysacc_synt_C PF14667.1 gi|148642565|ref|YP_001273078.1| - 4 7.2 10.8 23 4.7 7.6 1.9 1 1 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain DUF1297 PF06973.7 gi|148642566|ref|YP_001273079.1| - 8.8e-84 279.4 0.0 1.2e-83 279.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|148642566|ref|YP_001273079.1| - 1.7e-54 182.8 0.0 2.9e-54 182.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|148642566|ref|YP_001273079.1| - 5.1e-06 26.3 0.0 5.5e-05 22.9 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|148642566|ref|YP_001273079.1| - 0.052 12.8 0.0 0.13 11.5 0.0 1.5 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Metallophos_2 PF12850.2 gi|148642567|ref|YP_001273080.1| - 3.6e-33 114.5 0.0 4.2e-33 114.4 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|148642567|ref|YP_001273080.1| - 1e-08 34.8 0.0 0.0011 18.3 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase KdpD PF02702.12 gi|148642567|ref|YP_001273080.1| - 0.0082 15.3 0.0 0.014 14.5 0.0 1.4 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain Metallophos_3 PF14582.1 gi|148642567|ref|YP_001273080.1| - 0.015 14.4 0.1 0.076 12.1 0.0 1.9 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily FtsJ PF01728.14 gi|148642568|ref|YP_001273081.1| - 3e-54 183.7 0.0 3.4e-54 183.5 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.1 gi|148642568|ref|YP_001273081.1| - 0.00087 18.9 0.1 0.011 15.3 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148642568|ref|YP_001273081.1| - 0.009 15.7 0.0 0.018 14.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltrans_Mon PF14314.1 gi|148642568|ref|YP_001273081.1| - 0.015 13.1 0.0 0.02 12.7 0.0 1.2 1 0 0 1 1 1 0 Virus-capping methyltransferase DUF4398 PF14346.1 gi|148642569|ref|YP_001273082.1| - 0.0081 16.1 0.6 0.012 15.6 0.4 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4398) YfhO PF09586.5 gi|148642569|ref|YP_001273082.1| - 0.011 13.7 1.6 0.014 13.4 1.1 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO YtzH PF14165.1 gi|148642569|ref|YP_001273082.1| - 0.035 14.3 0.2 0.07 13.3 0.1 1.5 1 0 0 1 1 1 0 YtzH-like protein Tetraspannin PF00335.15 gi|148642569|ref|YP_001273082.1| - 0.036 13.3 0.1 0.041 13.1 0.1 1.1 1 0 0 1 1 1 0 Tetraspanin family Mrr_N PF14338.1 gi|148642569|ref|YP_001273082.1| - 0.076 13.1 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Mrr N-terminal domain Toxin_52 PF15605.1 gi|148642569|ref|YP_001273082.1| - 0.11 12.3 0.4 0.2 11.5 0.2 1.4 1 1 0 1 1 1 0 Putative toxin 52 Marek_A PF02124.10 gi|148642569|ref|YP_001273082.1| - 4.6 6.6 5.6 6.7 6.1 2.4 1.9 2 0 0 2 2 2 0 Marek's disease glycoprotein A MCM PF00493.18 gi|148642570|ref|YP_001273083.1| - 7.9e-136 452.2 0.1 1.1e-135 451.7 0.1 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|148642570|ref|YP_001273083.1| - 1.1e-13 51.7 0.9 8.8e-13 48.8 0.0 2.8 3 0 0 3 3 3 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|148642570|ref|YP_001273083.1| - 3.9e-08 32.7 0.0 0.00012 21.3 0.0 2.5 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|148642570|ref|YP_001273083.1| - 8e-06 25.6 0.0 4.8e-05 23.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|148642570|ref|YP_001273083.1| - 0.00064 19.3 0.0 0.0051 16.4 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|148642570|ref|YP_001273083.1| - 0.0024 17.3 0.1 0.81 9.1 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain tRNA_anti-codon PF01336.20 gi|148642570|ref|YP_001273083.1| - 0.0068 16.2 0.0 0.023 14.5 0.0 1.9 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain HypA PF01155.14 gi|148642570|ref|YP_001273083.1| - 0.017 14.8 0.0 0.041 13.5 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family AAA_16 PF13191.1 gi|148642570|ref|YP_001273083.1| - 0.028 14.4 1.3 0.24 11.3 0.1 2.7 2 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|148642570|ref|YP_001273083.1| - 0.031 14.4 0.0 0.13 12.4 0.0 2.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|148642570|ref|YP_001273083.1| - 0.06 13.4 0.1 0.28 11.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|148642570|ref|YP_001273083.1| - 0.75 10.0 4.6 3.9 7.7 0.1 3.4 3 1 1 4 4 4 0 ABC transporter Zn-ribbon_8 PF09723.5 gi|148642570|ref|YP_001273083.1| - 1.1 9.3 3.4 0.42 10.6 0.3 1.9 2 0 0 2 2 2 0 Zinc ribbon domain eIF-5_eIF-2B PF01873.12 gi|148642571|ref|YP_001273084.1| - 1.1e-46 157.5 0.0 1.3e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Peptidase_S66 PF02016.10 gi|148642571|ref|YP_001273084.1| - 0.023 13.6 0.0 0.025 13.5 0.0 1.1 1 0 0 1 1 1 0 LD-carboxypeptidase DNA_RNApol_7kD PF03604.8 gi|148642571|ref|YP_001273084.1| - 0.74 9.3 3.5 4.7 6.7 2.5 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit NMD3 PF04981.8 gi|148642572|ref|YP_001273085.1| - 2e-56 190.7 5.3 3e-56 190.1 3.7 1.3 1 0 0 1 1 1 1 NMD3 family Thioredoxin_3 PF13192.1 gi|148642572|ref|YP_001273085.1| - 0.0022 17.7 0.5 2.2 8.1 0.1 3.1 2 0 0 2 2 2 2 Thioredoxin domain DUF2797 PF10977.3 gi|148642572|ref|YP_001273085.1| - 0.0091 15.6 0.0 0.027 14.1 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) Ima1_N PF09779.4 gi|148642572|ref|YP_001273085.1| - 0.046 14.2 0.3 0.33 11.4 0.1 2.2 2 0 0 2 2 2 0 Ima1 N-terminal domain Rpr2 PF04032.11 gi|148642572|ref|YP_001273085.1| - 0.29 11.0 4.9 1.7 8.5 0.0 2.7 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-ribbon_3 PF13248.1 gi|148642572|ref|YP_001273085.1| - 1.3 8.3 4.8 21 4.4 0.1 3.5 4 0 0 4 4 4 0 zinc-ribbon domain tRNA-synt_1b PF00579.20 gi|148642573|ref|YP_001273086.1| - 1.4e-50 172.0 0.2 1.7e-50 171.8 0.2 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|148642573|ref|YP_001273086.1| - 1.1e-06 27.6 0.2 0.033 12.8 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (K) OpuAC PF04069.7 gi|148642573|ref|YP_001273086.1| - 0.11 11.8 0.0 0.36 10.1 0.0 1.7 2 1 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system MtaB PF12176.3 gi|148642575|ref|YP_001273088.1| - 4.6e-206 684.7 2.0 5.1e-206 684.5 1.4 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit Methyltransf_14 PF08484.6 gi|148642575|ref|YP_001273088.1| - 0.12 11.9 0.0 0.29 10.6 0.0 1.6 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain B12-binding PF02310.14 gi|148642576|ref|YP_001273089.1| - 8.8e-14 51.4 0.1 1.4e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|148642576|ref|YP_001273089.1| - 5.8e-12 45.4 0.0 9.7e-12 44.7 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain DUF4445 PF14574.1 gi|148642577|ref|YP_001273090.1| - 1.9e-111 372.2 5.1 3.3e-111 371.4 3.5 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_6 PF12837.2 gi|148642577|ref|YP_001273090.1| - 6e-06 25.8 10.2 6.2e-05 22.6 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|148642577|ref|YP_001273090.1| - 2.8e-05 23.5 6.8 3.3e-05 23.2 0.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642577|ref|YP_001273090.1| - 4e-05 23.9 7.7 0.00013 22.2 5.6 1.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642577|ref|YP_001273090.1| - 0.00031 20.9 20.2 0.0031 17.7 6.9 2.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642577|ref|YP_001273090.1| - 0.00063 20.4 7.5 0.001 19.7 1.2 2.5 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|148642577|ref|YP_001273090.1| - 0.0013 18.4 6.7 0.0023 17.6 4.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642577|ref|YP_001273090.1| - 0.033 14.5 3.9 0.043 14.1 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642577|ref|YP_001273090.1| - 0.066 13.0 8.4 0.17 11.7 5.8 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148642577|ref|YP_001273090.1| - 0.51 10.4 9.9 1.5 8.9 6.9 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642577|ref|YP_001273090.1| - 0.73 9.8 9.9 0.11 12.4 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148642577|ref|YP_001273090.1| - 0.88 10.0 11.2 0.05 13.9 1.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain URO-D PF01208.12 gi|148642578|ref|YP_001273091.1| - 4.2e-78 262.6 0.1 4.8e-78 262.4 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_2 PF01717.13 gi|148642578|ref|YP_001273091.1| - 7.2e-06 25.1 0.5 1.2e-05 24.4 0.4 1.3 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Thymidylate_kin PF02223.12 gi|148642580|ref|YP_001273093.1| - 3e-40 137.5 0.0 3.4e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.1 gi|148642580|ref|YP_001273093.1| - 4.8e-06 26.6 0.0 6.3e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain PPK2 PF03976.9 gi|148642580|ref|YP_001273093.1| - 0.00026 20.3 0.0 0.00048 19.4 0.0 1.4 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) AAA_18 PF13238.1 gi|148642580|ref|YP_001273093.1| - 0.058 13.6 1.4 0.68 10.2 0.9 2.1 1 1 0 1 1 1 0 AAA domain SKI PF01202.17 gi|148642580|ref|YP_001273093.1| - 0.069 13.0 0.2 1.4 8.7 0.1 2.1 2 0 0 2 2 2 0 Shikimate kinase ADK PF00406.17 gi|148642580|ref|YP_001273093.1| - 0.078 12.8 0.6 0.53 10.1 0.4 2.2 1 1 0 1 1 1 0 Adenylate kinase AAA_22 PF13401.1 gi|148642580|ref|YP_001273093.1| - 0.091 12.9 0.0 0.16 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|148642580|ref|YP_001273093.1| - 0.14 11.7 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain SymE_toxin PF08845.5 gi|148642580|ref|YP_001273093.1| - 0.15 11.8 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system DUF2142 PF09913.4 gi|148642581|ref|YP_001273094.1| - 6e-93 311.5 26.5 9.6e-92 307.6 16.8 2.1 2 0 0 2 2 2 2 Predicted membrane protein (DUF2142) DUF2670 PF10875.3 gi|148642581|ref|YP_001273094.1| - 0.026 14.5 1.0 0.08 12.9 0.7 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2670) Peptidase_U32 PF01136.14 gi|148642582|ref|YP_001273095.1| - 7.5e-96 319.5 0.1 4.4e-72 241.7 0.0 2.3 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|148642582|ref|YP_001273095.1| - 2.5e-23 82.4 0.0 4.5e-23 81.6 0.0 1.5 1 0 0 1 1 1 1 Collagenase Glyco_hydro_97 PF10566.4 gi|148642582|ref|YP_001273095.1| - 0.0091 15.1 1.0 0.037 13.1 0.2 2.1 1 1 0 2 2 2 1 Glycoside hydrolase 97 Peptidase_U32 PF01136.14 gi|148642583|ref|YP_001273096.1| - 1.8e-83 279.0 0.5 8e-69 231.1 0.1 2.4 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|148642583|ref|YP_001273096.1| - 5.5e-20 71.6 0.0 1.2e-19 70.5 0.0 1.7 1 0 0 1 1 1 1 Collagenase MutS_V PF00488.16 gi|148642584|ref|YP_001273097.1| - 1.8e-13 50.4 0.1 3.6e-13 49.4 0.1 1.5 1 0 0 1 1 1 1 MutS domain V AAA_14 PF13173.1 gi|148642584|ref|YP_001273097.1| - 0.00057 19.7 0.1 0.00057 19.7 0.0 3.6 3 1 1 4 4 4 1 AAA domain HHH_5 PF14520.1 gi|148642584|ref|YP_001273097.1| - 0.00097 19.2 0.9 0.006 16.7 0.2 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_28 PF13521.1 gi|148642584|ref|YP_001273097.1| - 0.01 15.7 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|148642584|ref|YP_001273097.1| - 0.022 14.2 0.1 0.045 13.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain HHH_2 PF12826.2 gi|148642584|ref|YP_001273097.1| - 0.17 11.8 2.8 5.5 6.9 0.0 3.1 2 1 1 3 3 3 0 Helix-hairpin-helix motif Band_7 PF01145.20 gi|148642584|ref|YP_001273097.1| - 0.27 11.1 9.1 0.027 14.3 2.0 2.3 3 0 0 3 3 3 0 SPFH domain / Band 7 family ABC_tran PF00005.22 gi|148642584|ref|YP_001273097.1| - 0.53 10.5 0.1 0.53 10.5 0.0 3.1 3 2 0 3 3 3 0 ABC transporter ABC1 PF03109.11 gi|148642585|ref|YP_001273098.1| - 4e-33 113.8 0.0 1.1e-32 112.5 0.0 1.8 1 0 0 1 1 1 1 ABC1 family Pkinase PF00069.20 gi|148642585|ref|YP_001273098.1| - 0.00023 20.3 2.2 0.00023 20.3 1.5 2.1 2 1 0 2 2 2 1 Protein kinase domain APH PF01636.18 gi|148642585|ref|YP_001273098.1| - 0.12 12.1 0.5 0.22 11.2 0.4 1.4 1 0 0 1 1 1 0 Phosphotransferase enzyme family DUF2833 PF11090.3 gi|148642586|ref|YP_001273099.1| - 0.0052 16.9 0.1 0.023 14.8 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2833) UPF0061 PF02696.9 gi|148642586|ref|YP_001273099.1| - 0.01 14.2 0.1 0.01 14.2 0.1 1.7 2 0 0 2 2 2 1 Uncharacterized ACR, YdiU/UPF0061 family DDE_Tnp_IS66 PF03050.9 gi|148642587|ref|YP_001273100.1| - 3.8e-05 23.0 2.7 0.00039 19.7 1.9 2.2 1 1 0 1 1 1 1 Transposase IS66 family YlbE PF14003.1 gi|148642587|ref|YP_001273100.1| - 0.0056 16.7 0.3 0.018 15.1 0.2 1.9 1 0 0 1 1 1 1 YlbE-like protein UPF0193 PF05250.6 gi|148642587|ref|YP_001273100.1| - 0.039 13.5 1.3 0.08 12.5 0.6 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0193) IL5 PF02025.10 gi|148642587|ref|YP_001273100.1| - 0.069 13.1 5.1 0.19 11.7 0.6 2.8 2 0 0 2 2 2 0 Interleukin 5 HEPN PF05168.9 gi|148642587|ref|YP_001273100.1| - 0.26 11.1 3.3 0.91 9.4 1.4 2.5 2 1 0 2 2 2 0 HEPN domain CAP PF00188.21 gi|148642587|ref|YP_001273100.1| - 0.42 11.1 3.0 0.99 9.9 1.1 2.3 2 1 0 2 2 2 0 Cysteine-rich secretory protein family Transposase_mut PF00872.13 gi|148642587|ref|YP_001273100.1| - 1.1 7.6 4.5 40 2.5 3.2 2.7 2 1 1 3 3 3 0 Transposase, Mutator family Cnl2_NKP2 PF09447.5 gi|148642587|ref|YP_001273100.1| - 2.7 7.7 7.1 1.1 8.9 0.9 3.1 1 1 1 2 2 2 0 Cnl2/NKP2 family protein zinc_ribbon_2 PF13240.1 gi|148642588|ref|YP_001273101.1| - 0.053 13.0 4.1 0.65 9.5 0.8 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|148642588|ref|YP_001273101.1| - 0.064 13.0 5.8 0.14 11.9 4.0 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|148642588|ref|YP_001273101.1| - 0.1 12.5 1.8 1 9.3 0.3 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4pol PF14260.1 gi|148642588|ref|YP_001273101.1| - 0.11 12.5 3.7 0.2 11.7 2.6 1.6 1 1 0 1 1 1 0 C4-type zinc-finger of DNA polymerase delta DUF2296 PF10058.4 gi|148642588|ref|YP_001273101.1| - 0.12 12.1 2.7 0.27 11.0 0.2 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Salp15 PF12115.3 gi|148642588|ref|YP_001273101.1| - 0.13 12.5 5.0 0.15 12.3 3.5 1.1 1 0 0 1 1 1 0 Salivary protein of 15kDa inhibits CD4+ T cell activation A2L_zn_ribbon PF08792.5 gi|148642588|ref|YP_001273101.1| - 0.15 11.5 6.5 1.7 8.1 0.3 2.9 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-Sec23_Sec24 PF04810.10 gi|148642588|ref|YP_001273101.1| - 0.15 11.6 1.0 7.5 6.2 0.0 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-HIT PF04438.11 gi|148642588|ref|YP_001273101.1| - 0.46 10.1 5.4 3.5 7.3 0.7 2.2 2 0 0 2 2 2 0 HIT zinc finger HypA PF01155.14 gi|148642588|ref|YP_001273101.1| - 0.55 9.9 2.7 9.8 5.9 2.3 2.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF1958 PF09211.5 gi|148642588|ref|YP_001273101.1| - 0.59 10.2 5.0 0.14 12.2 1.0 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF1958) DZR PF12773.2 gi|148642588|ref|YP_001273101.1| - 0.77 9.6 6.9 1.4 8.7 4.8 1.4 1 1 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|148642588|ref|YP_001273101.1| - 0.86 9.1 5.5 5.2 6.6 0.9 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-H2C2_2 PF13465.1 gi|148642588|ref|YP_001273101.1| - 1.3 9.4 4.7 0.49 10.7 1.2 1.9 2 0 0 2 2 2 0 Zinc-finger double domain zf-RanBP PF00641.13 gi|148642588|ref|YP_001273101.1| - 1.4 8.0 4.2 1.7 7.8 0.4 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-ISL3 PF14690.1 gi|148642588|ref|YP_001273101.1| - 2.1 8.4 8.5 38 4.4 5.6 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|148642589|ref|YP_001273102.1| - 3e-06 26.9 19.2 0.0003 20.5 7.2 2.5 1 1 1 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|148642589|ref|YP_001273102.1| - 7.1e-06 25.0 15.7 0.0011 18.1 2.0 2.7 3 0 0 3 3 3 2 zinc-ribbon domain UPF0547 PF10571.4 gi|148642589|ref|YP_001273102.1| - 0.00085 18.9 4.3 0.015 15.0 0.2 3.1 1 1 1 2 2 2 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|148642589|ref|YP_001273102.1| - 0.0016 17.8 17.2 0.0096 15.3 3.4 2.8 3 0 0 3 3 2 2 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|148642589|ref|YP_001273102.1| - 0.029 14.1 9.1 0.15 11.8 0.6 2.7 2 1 0 2 2 2 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|148642589|ref|YP_001273102.1| - 0.045 13.4 0.7 0.045 13.4 0.5 2.5 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-Di19 PF05605.7 gi|148642589|ref|YP_001273102.1| - 0.056 13.5 3.1 0.38 10.9 0.1 2.4 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Prok-RING_1 PF14446.1 gi|148642589|ref|YP_001273102.1| - 0.089 12.5 11.8 0.9 9.3 1.3 3.1 2 1 1 3 3 3 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|148642589|ref|YP_001273102.1| - 0.21 11.3 7.3 5.9 6.6 0.0 3.9 4 0 0 4 4 4 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|148642589|ref|YP_001273102.1| - 0.23 10.7 13.5 0.93 8.8 0.1 3.7 2 1 0 3 3 3 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.1 gi|148642589|ref|YP_001273102.1| - 0.34 10.4 5.1 0.62 9.5 0.1 2.7 1 1 1 2 2 2 0 Transposase zinc-binding domain FYVE PF01363.16 gi|148642589|ref|YP_001273102.1| - 0.35 10.8 4.7 5.2 7.0 3.0 2.4 1 1 0 1 1 1 0 FYVE zinc finger zf-NADH-PPase PF09297.6 gi|148642589|ref|YP_001273102.1| - 0.76 9.3 6.4 6.2 6.4 0.0 3.5 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|148642589|ref|YP_001273102.1| - 0.92 9.3 11.5 1.5 8.6 1.3 3.1 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like gp32 PF08804.5 gi|148642589|ref|YP_001273102.1| - 3.1 7.9 10.1 9.7 6.3 1.7 2.7 2 1 1 3 3 3 0 gp32 DNA binding protein like zf-CCHC PF00098.18 gi|148642589|ref|YP_001273102.1| - 3.4 7.7 5.5 26 4.9 0.2 2.7 2 0 0 2 2 2 0 Zinc knuckle zf-C2HC_2 PF13913.1 gi|148642589|ref|YP_001273102.1| - 4.1 7.1 8.4 14 5.4 0.1 3.5 2 1 1 3 3 3 0 zinc-finger of a C2HC-type OrfB_Zn_ribbon PF07282.6 gi|148642589|ref|YP_001273102.1| - 4.2 7.0 8.1 1.9 8.1 0.9 3.2 1 1 3 4 4 4 0 Putative transposase DNA-binding domain DUF2318 PF10080.4 gi|148642589|ref|YP_001273102.1| - 4.4 7.1 6.8 3.5 7.4 1.1 2.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) Prim_Zn_Ribbon PF08273.7 gi|148642589|ref|YP_001273102.1| - 8.4 6.5 10.0 0.59 10.2 0.3 3.1 3 1 0 3 3 3 0 Zinc-binding domain of primase-helicase TPR_11 PF13414.1 gi|148642590|ref|YP_001273103.1| - 1.6e-06 27.6 5.6 2.9e-06 26.8 1.6 2.7 2 0 0 2 2 2 1 TPR repeat TPR_2 PF07719.12 gi|148642590|ref|YP_001273103.1| - 0.00013 21.6 8.8 0.035 14.0 0.1 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat HIRAN PF08797.6 gi|148642590|ref|YP_001273103.1| - 0.00048 20.0 0.0 0.00097 19.0 0.0 1.4 1 0 0 1 1 1 1 HIRAN domain TPR_8 PF13181.1 gi|148642590|ref|YP_001273103.1| - 0.011 15.4 0.8 0.011 15.4 0.6 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|148642590|ref|YP_001273103.1| - 0.026 14.1 0.3 0.026 14.1 0.2 3.3 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|148642590|ref|YP_001273103.1| - 0.036 13.9 2.4 0.18 11.7 0.4 2.8 2 1 1 3 3 3 0 Tetratricopeptide repeat zf-ribbon_3 PF13248.1 gi|148642590|ref|YP_001273103.1| - 0.26 10.5 4.4 0.78 9.0 3.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DNA_methylase PF00145.12 gi|148642591|ref|YP_001273104.1| - 3.8e-09 36.1 0.1 4.5e-08 32.5 0.1 1.9 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase Prok-RING_1 PF14446.1 gi|148642591|ref|YP_001273104.1| - 0.056 13.1 0.2 0.1 12.3 0.2 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ISL3 PF14690.1 gi|148642592|ref|YP_001273105.1| - 0.09 12.8 0.3 0.17 11.9 0.2 1.4 1 0 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DDE_Tnp_IS66 PF03050.9 gi|148642593|ref|YP_001273106.1| - 0.0036 16.5 0.0 0.021 14.0 0.0 2.0 1 1 0 1 1 1 1 Transposase IS66 family RNase_E_G PF10150.4 gi|148642594|ref|YP_001273107.1| - 0.16 11.1 0.4 0.17 11.1 0.3 1.0 1 0 0 1 1 1 0 Ribonuclease E/G family YlbE PF14003.1 gi|148642594|ref|YP_001273107.1| - 0.26 11.3 1.7 0.57 10.3 0.2 1.9 1 1 1 2 2 2 0 YlbE-like protein A_thal_3526 PF09713.5 gi|148642595|ref|YP_001273108.1| - 0.03 14.4 0.2 0.068 13.3 0.1 1.6 1 0 0 1 1 1 0 Plant protein 1589 of unknown function (A_thal_3526) SseB PF07179.7 gi|148642596|ref|YP_001273109.1| - 2.2e-29 101.7 0.0 8.7e-18 64.3 0.0 2.2 2 0 0 2 2 2 2 SseB protein N-terminal domain TPR_8 PF13181.1 gi|148642597|ref|YP_001273110.1| - 8.8e-06 25.1 0.4 3.1e-05 23.4 0.3 1.9 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|148642597|ref|YP_001273110.1| - 0.0012 19.2 0.0 0.029 14.9 0.0 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|148642597|ref|YP_001273110.1| - 0.0084 15.9 0.0 0.023 14.5 0.0 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|148642597|ref|YP_001273110.1| - 0.011 15.3 0.1 0.016 14.8 0.1 1.4 1 0 0 1 1 1 0 TPR repeat TPR_19 PF14559.1 gi|148642597|ref|YP_001273110.1| - 0.024 14.9 0.1 0.13 12.6 0.0 2.1 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|148642597|ref|YP_001273110.1| - 0.055 13.1 0.1 0.16 11.6 0.1 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat Clathrin PF00637.15 gi|148642597|ref|YP_001273110.1| - 0.067 12.7 0.6 0.13 11.8 0.2 1.6 1 1 0 1 1 1 0 Region in Clathrin and VPS Radical_SAM PF04055.16 gi|148642598|ref|YP_001273111.1| - 3.5e-11 43.5 0.1 4.2e-11 43.2 0.1 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|148642598|ref|YP_001273111.1| - 3.5e-09 36.8 0.2 4.5e-09 36.5 0.1 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|148642598|ref|YP_001273111.1| - 2.8e-08 33.7 0.0 3.8e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Usher PF00577.15 gi|148642599|ref|YP_001273112.1| - 1.3 7.7 6.4 1.7 7.2 4.4 1.1 1 0 0 1 1 1 0 Outer membrane usher protein HATPase_c_4 PF13749.1 gi|148642600|ref|YP_001273113.1| - 1.1e-21 76.4 0.1 2.1e-21 75.5 0.0 1.5 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal DUF4062 PF13271.1 gi|148642600|ref|YP_001273113.1| - 6.8e-16 58.0 0.6 1.8e-15 56.7 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4062) HTH_DeoR PF08220.7 gi|148642600|ref|YP_001273113.1| - 0.0081 15.6 0.1 0.017 14.6 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Bac_luciferase PF00296.15 gi|148642602|ref|YP_001273115.1| - 8.3e-56 189.3 0.0 9.4e-56 189.1 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PHP PF02811.14 gi|148642602|ref|YP_001273115.1| - 0.02 14.6 0.3 0.025 14.3 0.2 1.4 1 1 0 1 1 1 0 PHP domain Radical_SAM PF04055.16 gi|148642603|ref|YP_001273116.1| - 1.3e-09 38.4 0.0 3.2e-09 37.1 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Peptidase_S30 PF01577.11 gi|148642603|ref|YP_001273116.1| - 0.096 12.0 0.5 5.5 6.3 0.0 2.6 2 1 1 3 3 3 0 Potyvirus P1 protease Ndc80_HEC PF03801.8 gi|148642603|ref|YP_001273116.1| - 0.14 11.5 1.0 0.18 11.2 0.1 1.6 2 0 0 2 2 2 0 HEC/Ndc80p family Radical_SAM PF04055.16 gi|148642604|ref|YP_001273117.1| - 0.0017 18.5 0.3 0.0059 16.7 0.2 1.9 1 1 0 2 2 2 1 Radical SAM superfamily Sigma54_CBD PF04963.8 gi|148642604|ref|YP_001273117.1| - 0.093 12.1 0.0 0.21 11.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain DUF308 PF03729.8 gi|148642606|ref|YP_001273119.1| - 2.2e-08 33.9 48.1 0.00021 21.2 15.1 3.1 2 1 1 3 3 3 3 Short repeat of unknown function (DUF308) CTP_transf_2 PF01467.21 gi|148642607|ref|YP_001273120.1| - 4.4e-05 23.5 0.0 0.0001 22.4 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase HIGH_NTase1 PF05636.6 gi|148642607|ref|YP_001273120.1| - 4.8e-05 22.5 0.1 0.0075 15.3 0.0 2.2 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase FAD_syn PF06574.7 gi|148642607|ref|YP_001273120.1| - 0.00029 20.5 0.1 0.00057 19.5 0.1 1.5 1 0 0 1 1 1 1 FAD synthetase NAD_binding_2 PF03446.10 gi|148642608|ref|YP_001273121.1| - 8.1e-05 22.5 0.1 0.00014 21.7 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase DapB_N PF01113.15 gi|148642608|ref|YP_001273121.1| - 0.00017 21.5 0.0 0.00038 20.3 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.12 gi|148642608|ref|YP_001273121.1| - 0.0002 21.7 0.1 0.00047 20.5 0.0 1.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent PMBR PF09373.5 gi|148642608|ref|YP_001273121.1| - 0.0025 17.6 0.6 20 5.3 0.0 3.8 3 0 0 3 3 3 0 Pseudomurein-binding repeat DUF2183 PF09949.4 gi|148642608|ref|YP_001273121.1| - 0.0088 15.9 0.2 1.7 8.6 0.1 2.6 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2183) 2-Hacid_dh_C PF02826.14 gi|148642608|ref|YP_001273121.1| - 0.01 14.9 0.0 0.02 14.0 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sda PF08970.5 gi|148642608|ref|YP_001273121.1| - 0.018 14.5 0.5 0.062 12.7 0.4 1.9 1 0 0 1 1 1 0 Sporulation inhibitor A DUF4288 PF14119.1 gi|148642608|ref|YP_001273121.1| - 0.025 14.6 0.4 0.24 11.5 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4288) DUF1517 PF07466.6 gi|148642608|ref|YP_001273121.1| - 0.098 11.6 0.7 0.15 11.0 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) DsbD PF02683.10 gi|148642609|ref|YP_001273122.1| - 1.4e-24 86.9 23.7 1.7e-24 86.5 16.5 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF4199 PF13858.1 gi|148642609|ref|YP_001273122.1| - 0.0022 17.9 12.6 0.0022 17.9 8.7 3.1 2 1 0 2 2 2 1 Protein of unknown function (DUF4199) DUF2852 PF11014.3 gi|148642609|ref|YP_001273122.1| - 0.6 10.0 2.6 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2852) DPM3 PF08285.6 gi|148642609|ref|YP_001273122.1| - 1.3 8.9 9.0 1.3 8.8 0.8 2.9 3 0 0 3 3 3 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF2116 PF09889.4 gi|148642609|ref|YP_001273122.1| - 1.6 8.6 5.1 15 5.4 0.4 2.8 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) ATG27 PF09451.5 gi|148642609|ref|YP_001273122.1| - 1.9 7.6 5.1 7.4 5.7 0.9 2.1 2 0 0 2 2 2 0 Autophagy-related protein 27 RseC_MucC PF04246.7 gi|148642609|ref|YP_001273122.1| - 5.4 6.5 12.0 5.9 6.4 1.9 2.4 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC MFS_Mycoplasma PF07672.8 gi|148642609|ref|YP_001273122.1| - 6.3 5.8 19.4 2.6 7.1 2.9 2.2 1 1 1 2 2 2 0 Mycoplasma MFS transporter Thioredoxin_2 PF13098.1 gi|148642610|ref|YP_001273123.1| - 3.3e-17 62.7 0.3 1.5e-16 60.5 0.2 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|148642610|ref|YP_001273123.1| - 3.6e-13 49.3 0.0 4.9e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredox_DsbH PF03190.10 gi|148642610|ref|YP_001273123.1| - 9.8e-12 44.8 0.0 1.2e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin PF00085.15 gi|148642610|ref|YP_001273123.1| - 7.3e-09 35.2 0.0 9.8e-09 34.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|148642610|ref|YP_001273123.1| - 7.9e-08 32.0 0.0 1.3e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain ABC2_membrane_3 PF12698.2 gi|148642610|ref|YP_001273123.1| - 0.0045 16.0 1.2 0.0053 15.8 0.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein KaiB PF07689.7 gi|148642610|ref|YP_001273123.1| - 0.0074 15.7 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 KaiB domain Thioredoxin_8 PF13905.1 gi|148642610|ref|YP_001273123.1| - 0.0079 16.2 0.5 0.73 9.9 0.0 2.2 1 1 1 2 2 2 1 Thioredoxin-like DcuC PF03606.10 gi|148642610|ref|YP_001273123.1| - 0.023 12.9 0.0 0.024 12.8 0.0 1.1 1 0 0 1 1 1 0 C4-dicarboxylate anaerobic carrier DUF2847 PF11009.3 gi|148642610|ref|YP_001273123.1| - 0.03 13.9 0.3 0.041 13.4 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2847) DUF836 PF05768.9 gi|148642610|ref|YP_001273123.1| - 0.033 14.4 0.2 0.064 13.5 0.1 1.4 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_9 PF14595.1 gi|148642610|ref|YP_001273123.1| - 0.054 13.0 0.2 0.097 12.2 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin CbiA PF01656.18 gi|148642610|ref|YP_001273123.1| - 0.055 12.8 0.0 0.09 12.1 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF3139 PF11337.3 gi|148642610|ref|YP_001273123.1| - 0.063 13.5 0.2 0.15 12.3 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) Herpes_UL95 PF03038.9 gi|148642610|ref|YP_001273123.1| - 0.065 12.0 0.1 0.07 12.0 0.1 1.1 1 0 0 1 1 1 0 UL95 family Ni_hydr_CYTB PF01292.15 gi|148642610|ref|YP_001273123.1| - 0.075 12.4 0.0 0.089 12.1 0.0 1.1 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 Glutaredoxin PF00462.19 gi|148642610|ref|YP_001273123.1| - 0.087 12.8 0.2 0.24 11.4 0.2 1.7 1 1 0 1 1 1 0 Glutaredoxin HyaE PF07449.6 gi|148642610|ref|YP_001273123.1| - 0.1 12.5 0.0 0.14 12.1 0.0 1.4 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_4 PF13462.1 gi|148642610|ref|YP_001273123.1| - 0.11 12.4 0.8 4.4 7.2 0.3 2.2 1 1 1 2 2 2 0 Thioredoxin Redoxin PF08534.5 gi|148642610|ref|YP_001273123.1| - 0.11 11.9 0.1 0.21 11.1 0.1 1.4 1 1 0 1 1 1 0 Redoxin Cytochrom_NNT PF03264.9 gi|148642610|ref|YP_001273123.1| - 0.12 11.8 0.2 0.12 11.8 0.2 1.8 1 1 1 2 2 2 0 NapC/NirT cytochrome c family, N-terminal region DUF89 PF01937.14 gi|148642611|ref|YP_001273124.1| - 2.7e-46 157.9 1.3 3.2e-46 157.7 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF89 PPP5 PF08321.7 gi|148642611|ref|YP_001273124.1| - 0.035 14.1 0.2 0.11 12.4 0.1 1.9 1 1 0 1 1 1 0 PPP5 TPR repeat region ThiS PF02597.15 gi|148642612|ref|YP_001273125.1| - 1e-06 29.0 0.0 1.2e-06 28.8 0.0 1.0 1 0 0 1 1 1 1 ThiS family ATP_bind_3 PF01171.15 gi|148642613|ref|YP_001273126.1| - 3.4e-16 59.2 0.0 5.3e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|148642613|ref|YP_001273126.1| - 2.1e-06 26.5 0.2 4e-06 25.6 0.2 1.5 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|148642613|ref|YP_001273126.1| - 0.00045 19.2 0.3 0.00062 18.7 0.2 1.2 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|148642613|ref|YP_001273126.1| - 0.0013 18.0 0.4 0.0048 16.1 0.2 2.1 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.14 gi|148642613|ref|YP_001273126.1| - 0.004 17.0 0.0 0.0073 16.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|148642613|ref|YP_001273126.1| - 0.029 13.7 0.1 0.058 12.7 0.1 1.5 1 0 0 1 1 1 0 ATP-binding region TF_Zn_Ribbon PF08271.7 gi|148642613|ref|YP_001273126.1| - 0.031 13.5 0.2 0.031 13.5 0.1 3.6 3 1 0 3 3 3 0 TFIIB zinc-binding DUF2392 PF10288.4 gi|148642613|ref|YP_001273126.1| - 0.09 13.1 0.2 0.34 11.2 0.0 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF2392) zf-B_box PF00643.19 gi|148642613|ref|YP_001273126.1| - 1.6 8.7 9.4 8.6 6.3 0.8 2.8 2 0 0 2 2 2 0 B-box zinc finger MU117 PF15474.1 gi|148642613|ref|YP_001273126.1| - 5 7.6 8.2 0.9 10.0 0.1 3.1 2 1 0 3 3 3 0 Meiotically up-regulated gene family RecR PF02132.10 gi|148642613|ref|YP_001273126.1| - 9.3 5.7 12.6 10 5.6 1.5 3.7 3 0 0 3 3 3 0 RecR protein VWA_CoxE PF05762.9 gi|148642614|ref|YP_001273127.1| - 1.4e-48 164.9 0.0 2.8e-48 163.9 0.0 1.5 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein AAA_5 PF07728.9 gi|148642615|ref|YP_001273128.1| - 3.7e-18 65.5 0.0 7.8e-18 64.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|148642615|ref|YP_001273128.1| - 2.3e-14 53.1 0.0 2.8e-06 26.9 0.0 2.2 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|148642615|ref|YP_001273128.1| - 1.8e-12 47.5 0.2 9.6e-12 45.2 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|148642615|ref|YP_001273128.1| - 1.1e-07 31.8 0.1 1.8e-07 31.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|148642615|ref|YP_001273128.1| - 1e-06 27.9 0.1 0.0028 16.7 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|148642615|ref|YP_001273128.1| - 1.3e-06 28.4 0.1 1.5e-05 25.0 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|148642615|ref|YP_001273128.1| - 7.4e-06 26.1 0.1 3.5e-05 23.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|148642615|ref|YP_001273128.1| - 2.7e-05 24.0 0.6 0.00015 21.6 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|148642615|ref|YP_001273128.1| - 5.9e-05 23.3 0.1 0.00022 21.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|148642615|ref|YP_001273128.1| - 5.9e-05 23.8 0.0 0.00012 22.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain MCM PF00493.18 gi|148642615|ref|YP_001273128.1| - 8e-05 21.5 0.0 0.0038 16.0 0.0 2.2 2 0 0 2 2 2 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|148642615|ref|YP_001273128.1| - 0.00017 21.1 0.0 0.6 9.5 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|148642615|ref|YP_001273128.1| - 0.00029 20.5 0.0 0.00055 19.6 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain Mg_chelatase PF01078.16 gi|148642615|ref|YP_001273128.1| - 0.00091 18.4 0.0 0.17 11.0 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|148642615|ref|YP_001273128.1| - 0.0031 17.1 1.2 0.019 14.6 0.5 2.4 2 1 0 2 2 2 1 NACHT domain NB-ARC PF00931.17 gi|148642615|ref|YP_001273128.1| - 0.008 15.0 0.0 0.011 14.5 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain NTPase_1 PF03266.10 gi|148642615|ref|YP_001273128.1| - 0.0089 15.7 0.1 0.3 10.7 0.1 2.3 1 1 0 1 1 1 1 NTPase TIP49 PF06068.8 gi|148642615|ref|YP_001273128.1| - 0.013 14.2 0.0 0.29 9.7 0.0 2.2 2 0 0 2 2 2 0 TIP49 C-terminus IstB_IS21 PF01695.12 gi|148642615|ref|YP_001273128.1| - 0.019 14.3 0.0 0.048 13.0 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|148642615|ref|YP_001273128.1| - 0.019 15.0 0.0 0.038 14.1 0.0 1.7 1 1 0 1 1 1 0 RNA helicase Arch_ATPase PF01637.13 gi|148642615|ref|YP_001273128.1| - 0.02 14.5 0.1 0.045 13.4 0.1 1.6 1 1 0 1 1 1 0 Archaeal ATPase AAA_30 PF13604.1 gi|148642615|ref|YP_001273128.1| - 0.037 13.5 0.0 0.092 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|148642615|ref|YP_001273128.1| - 0.044 13.8 0.1 6 6.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain CbbQ_C PF08406.5 gi|148642615|ref|YP_001273128.1| - 0.055 13.4 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 CbbQ/NirQ/NorQ C-terminal ABC_tran PF00005.22 gi|148642615|ref|YP_001273128.1| - 0.056 13.7 0.0 0.13 12.5 0.0 1.8 1 1 0 1 1 1 0 ABC transporter Guanylate_kin PF00625.16 gi|148642615|ref|YP_001273128.1| - 0.069 12.5 0.5 4.8 6.5 0.0 2.9 2 1 0 3 3 3 0 Guanylate kinase AAA_11 PF13086.1 gi|148642615|ref|YP_001273128.1| - 0.099 12.1 0.1 0.14 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain Pterin_bind PF00809.17 gi|148642616|ref|YP_001273129.1| - 1.9e-21 76.4 0.8 1.3e-20 73.6 0.0 2.4 3 0 0 3 3 3 1 Pterin binding enzyme DUF4346 PF14251.1 gi|148642616|ref|YP_001273129.1| - 5.4e-13 48.7 0.3 2e-12 46.9 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4346) DUF512 PF04459.7 gi|148642616|ref|YP_001273129.1| - 0.0083 15.2 1.8 0.012 14.6 0.4 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF512) POR PF01558.13 gi|148642617|ref|YP_001273130.1| - 1e-38 132.9 0.1 1.2e-38 132.6 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Torsin PF06309.6 gi|148642617|ref|YP_001273130.1| - 0.14 12.0 0.1 0.39 10.6 0.0 1.7 2 0 0 2 2 2 0 Torsin Fer4 PF00037.22 gi|148642618|ref|YP_001273131.1| - 7.2e-13 47.5 15.4 4.2e-08 32.4 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642618|ref|YP_001273131.1| - 1.6e-10 41.1 31.1 4.9e-06 26.8 8.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642618|ref|YP_001273131.1| - 3.4e-10 39.6 13.7 1.2e-09 37.8 9.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642618|ref|YP_001273131.1| - 3.4e-10 39.5 24.6 4.8e-08 32.6 9.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148642618|ref|YP_001273131.1| - 4.2e-08 32.7 16.9 0.00012 21.7 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148642618|ref|YP_001273131.1| - 6.2e-08 32.7 22.1 3e-05 24.1 9.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642618|ref|YP_001273131.1| - 3.3e-06 26.6 17.6 0.0005 19.8 2.4 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148642618|ref|YP_001273131.1| - 3.6e-06 27.6 13.1 0.00055 20.6 2.3 2.3 2 1 1 3 3 3 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|148642618|ref|YP_001273131.1| - 1.6e-05 24.8 13.7 0.00074 19.6 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148642618|ref|YP_001273131.1| - 6.4e-05 23.2 11.1 0.0008 19.7 0.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|148642618|ref|YP_001273131.1| - 0.0002 21.6 12.2 0.0033 17.7 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|148642618|ref|YP_001273131.1| - 0.00095 19.1 10.5 0.14 12.2 0.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642618|ref|YP_001273131.1| - 0.0059 16.9 12.2 0.11 12.8 2.0 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|148642618|ref|YP_001273131.1| - 0.011 16.3 14.3 0.074 13.6 1.9 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|148642618|ref|YP_001273131.1| - 0.059 13.9 18.1 0.098 13.2 4.2 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain POR_N PF01855.14 gi|148642619|ref|YP_001273132.1| - 1.3e-72 243.9 1.0 1.8e-72 243.5 0.7 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|148642619|ref|YP_001273132.1| - 1.4e-09 37.9 0.1 3.7e-09 36.5 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain NAPRTase PF04095.11 gi|148642619|ref|YP_001273132.1| - 0.031 13.5 0.0 0.061 12.5 0.0 1.4 1 0 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) family B12-binding PF02310.14 gi|148642619|ref|YP_001273132.1| - 0.11 12.3 2.0 0.81 9.5 0.1 3.0 2 2 1 3 3 3 0 B12 binding domain Ycf66_N PF07444.6 gi|148642619|ref|YP_001273132.1| - 0.17 11.6 0.2 16 5.2 0.0 2.8 3 0 0 3 3 3 0 Ycf66 protein N-terminus TPP_enzyme_C PF02775.16 gi|148642620|ref|YP_001273133.1| - 6.3e-29 100.5 1.5 8.1e-29 100.1 0.2 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YLP PF02757.12 gi|148642620|ref|YP_001273133.1| - 0.11 12.2 0.0 15 5.7 0.0 2.4 2 0 0 2 2 2 0 YLP motif DXP_synthase_N PF13292.1 gi|148642620|ref|YP_001273133.1| - 0.21 10.4 0.4 1 8.2 0.3 1.9 1 1 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_11 PF13247.1 gi|148642621|ref|YP_001273134.1| - 2.2e-14 53.1 18.0 5e-14 51.9 8.7 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148642621|ref|YP_001273134.1| - 7.7e-11 42.2 31.6 0.0001 22.6 7.3 3.7 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148642621|ref|YP_001273134.1| - 3.4e-10 39.0 41.4 8.6e-08 31.4 2.8 5.5 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|148642621|ref|YP_001273134.1| - 7.1e-10 38.3 40.4 4.2e-05 23.2 1.8 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|148642621|ref|YP_001273134.1| - 1.1e-08 35.0 40.8 0.0012 19.2 2.6 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|148642621|ref|YP_001273134.1| - 1.3e-07 31.1 30.2 0.0011 18.7 1.3 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148642621|ref|YP_001273134.1| - 1.4e-07 31.1 31.5 0.0013 18.4 8.1 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642621|ref|YP_001273134.1| - 1.8e-07 31.3 34.1 0.0047 17.1 8.6 3.5 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642621|ref|YP_001273134.1| - 4.1e-05 23.3 35.4 0.012 15.5 10.0 4.0 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642621|ref|YP_001273134.1| - 8.2e-05 23.2 29.4 1.2 9.9 0.5 4.5 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|148642621|ref|YP_001273134.1| - 0.0018 18.4 1.9 0.0018 18.4 1.3 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|148642621|ref|YP_001273134.1| - 0.0026 18.2 0.9 0.0026 18.2 0.6 3.9 2 1 2 4 4 4 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|148642621|ref|YP_001273134.1| - 0.013 15.7 0.7 0.013 15.7 0.5 4.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148642621|ref|YP_001273134.1| - 0.024 14.6 27.7 0.38 10.8 5.3 3.1 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|148642621|ref|YP_001273134.1| - 0.14 12.5 1.8 0.14 12.5 1.2 3.9 4 1 0 4 4 3 0 4Fe-4S single cluster domain Mss4 PF04421.8 gi|148642621|ref|YP_001273134.1| - 4.2 7.2 6.4 7.1 6.5 0.6 2.3 2 0 0 2 2 2 0 Mss4 protein Fer4_18 PF13746.1 gi|148642621|ref|YP_001273134.1| - 4.3 7.8 29.4 7 7.1 2.1 4.0 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148642622|ref|YP_001273135.1| - 6.5e-08 31.8 23.0 3.7e-07 29.4 1.5 3.9 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148642622|ref|YP_001273135.1| - 9e-08 31.8 17.6 7.4e-07 28.8 7.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148642622|ref|YP_001273135.1| - 2.5e-07 30.2 22.0 1.2e-06 28.1 0.8 3.7 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642622|ref|YP_001273135.1| - 3.6e-07 30.4 17.8 1.4e-06 28.6 6.9 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|148642622|ref|YP_001273135.1| - 8.1e-06 25.6 6.1 8.1e-06 25.6 4.3 1.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642622|ref|YP_001273135.1| - 2.9e-05 23.7 19.3 0.00085 19.0 1.8 3.2 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148642622|ref|YP_001273135.1| - 9.3e-05 22.6 22.2 0.0003 20.9 9.0 2.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|148642622|ref|YP_001273135.1| - 0.0023 18.3 29.6 0.0034 17.8 3.4 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148642622|ref|YP_001273135.1| - 0.0034 17.5 22.8 0.0081 16.4 2.7 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148642622|ref|YP_001273135.1| - 0.0048 17.2 1.5 0.0048 17.2 1.1 3.1 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642622|ref|YP_001273135.1| - 0.016 15.8 2.0 0.016 15.8 1.4 3.3 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|148642622|ref|YP_001273135.1| - 0.049 14.1 13.8 0.054 14.0 0.7 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|148642622|ref|YP_001273135.1| - 0.057 13.4 22.6 2.2 8.3 15.7 3.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642622|ref|YP_001273135.1| - 0.1 12.9 19.6 5.9 7.3 0.3 3.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642622|ref|YP_001273135.1| - 0.96 9.3 22.3 0.85 9.5 8.7 2.8 1 1 0 2 2 2 0 4Fe-4S dicluster domain Desulfoferrod_N PF06397.7 gi|148642622|ref|YP_001273135.1| - 1.7 8.0 8.9 0.29 10.5 0.6 2.4 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Fumerase PF05681.9 gi|148642623|ref|YP_001273136.1| - 5.1e-98 327.4 0.2 5.8e-98 327.2 0.1 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) C-C_Bond_Lyase PF15617.1 gi|148642623|ref|YP_001273136.1| - 0.013 14.3 0.1 0.018 13.8 0.1 1.2 1 0 0 1 1 1 0 C-C_Bond_Lyase of the TIM-Barrel fold PhoU PF01895.14 gi|148642624|ref|YP_001273137.1| - 1.2e-24 86.6 8.1 1.8e-14 53.9 1.2 2.2 2 0 0 2 2 2 2 PhoU domain ABC_tran PF00005.22 gi|148642625|ref|YP_001273138.1| - 4.1e-30 104.8 0.0 6e-30 104.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|148642625|ref|YP_001273138.1| - 8.2e-12 45.6 0.0 4.4e-06 26.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|148642625|ref|YP_001273138.1| - 2.2e-07 30.3 0.1 0.0028 16.9 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|148642625|ref|YP_001273138.1| - 0.00012 22.2 0.0 0.00041 20.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|148642625|ref|YP_001273138.1| - 0.0003 20.2 0.0 0.00061 19.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|148642625|ref|YP_001273138.1| - 0.00046 19.3 0.0 0.0011 18.1 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|148642625|ref|YP_001273138.1| - 0.00048 20.5 0.3 0.0012 19.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|148642625|ref|YP_001273138.1| - 0.0033 18.2 0.0 0.0057 17.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|148642625|ref|YP_001273138.1| - 0.0048 16.7 0.0 0.0093 15.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain Adeno_IVa2 PF02456.10 gi|148642625|ref|YP_001273138.1| - 0.0077 14.9 0.1 0.036 12.7 0.0 1.9 2 0 0 2 2 2 1 Adenovirus IVa2 protein AAA_16 PF13191.1 gi|148642625|ref|YP_001273138.1| - 0.0079 16.1 0.1 0.02 14.8 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|148642625|ref|YP_001273138.1| - 0.0081 15.5 0.0 0.019 14.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|148642625|ref|YP_001273138.1| - 0.021 13.9 0.8 2.5 7.0 0.0 2.4 2 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|148642625|ref|YP_001273138.1| - 0.038 14.1 0.1 0.18 11.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|148642625|ref|YP_001273138.1| - 0.047 12.3 0.0 0.077 11.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NB-ARC PF00931.17 gi|148642625|ref|YP_001273138.1| - 0.071 11.9 0.0 0.15 10.8 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Arch_ATPase PF01637.13 gi|148642625|ref|YP_001273138.1| - 0.074 12.7 0.1 0.22 11.1 0.1 2.1 1 1 0 1 1 1 0 Archaeal ATPase AAA_5 PF07728.9 gi|148642625|ref|YP_001273138.1| - 0.079 12.6 0.1 0.66 9.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|148642625|ref|YP_001273138.1| - 0.085 12.3 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family RNA_helicase PF00910.17 gi|148642625|ref|YP_001273138.1| - 0.088 12.9 0.0 0.25 11.5 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|148642625|ref|YP_001273138.1| - 0.091 12.1 0.1 0.24 10.8 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain DUF3770 PF12603.3 gi|148642625|ref|YP_001273138.1| - 0.092 11.8 0.2 0.19 10.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3770) AAA_14 PF13173.1 gi|148642625|ref|YP_001273138.1| - 0.092 12.6 0.0 0.2 11.5 0.0 1.8 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|148642625|ref|YP_001273138.1| - 0.15 11.7 0.5 0.47 10.1 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B BPD_transp_1 PF00528.17 gi|148642626|ref|YP_001273139.1| - 6.1e-30 104.1 16.4 6.1e-30 104.1 11.4 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|148642627|ref|YP_001273140.1| - 1.3e-25 89.9 19.4 1.3e-25 89.9 13.5 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component V_ATPase_I PF01496.14 gi|148642627|ref|YP_001273140.1| - 0.47 8.2 2.6 0.96 7.2 1.8 1.5 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family UPF0239 PF06783.6 gi|148642627|ref|YP_001273140.1| - 0.61 10.0 2.8 1.6 8.7 0.2 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0239) TMEM18 PF14770.1 gi|148642627|ref|YP_001273140.1| - 8.9 5.8 8.6 2.2 7.8 0.4 3.2 3 0 0 3 3 3 0 Transmembrane protein 18 PBP_like_2 PF12849.2 gi|148642628|ref|YP_001273141.1| - 1.4e-41 142.8 7.0 3.1e-41 141.7 4.9 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|148642628|ref|YP_001273141.1| - 2e-19 69.3 0.2 2.6e-19 68.9 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|148642628|ref|YP_001273141.1| - 2e-06 27.6 0.0 3.2e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|148642628|ref|YP_001273141.1| - 0.0025 17.6 0.5 0.0053 16.5 0.3 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|148642628|ref|YP_001273141.1| - 0.015 14.4 0.0 0.027 13.5 0.0 1.4 1 0 0 1 1 1 0 LysR substrate binding domain PhoU PF01895.14 gi|148642629|ref|YP_001273142.1| - 5e-23 81.3 12.4 1.9e-12 47.4 0.4 2.6 3 0 0 3 3 3 2 PhoU domain HTH_24 PF13412.1 gi|148642629|ref|YP_001273142.1| - 5.6e-08 32.0 0.1 1.2e-07 30.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|148642629|ref|YP_001273142.1| - 4.2e-06 26.4 0.0 1.4e-05 24.7 0.0 2.0 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|148642629|ref|YP_001273142.1| - 4.5e-06 26.2 0.0 2.4e-05 23.9 0.0 2.2 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|148642629|ref|YP_001273142.1| - 5.2e-06 26.0 0.0 1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|148642629|ref|YP_001273142.1| - 2.3e-05 23.9 0.5 0.00012 21.6 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|148642629|ref|YP_001273142.1| - 0.00043 20.3 0.0 0.0016 18.4 0.0 2.0 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4 PF04545.11 gi|148642629|ref|YP_001273142.1| - 0.00096 18.4 0.0 0.0026 17.0 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 EAP30 PF04157.11 gi|148642629|ref|YP_001273142.1| - 0.0011 18.1 0.4 0.0051 15.9 0.0 2.2 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_11 PF08279.7 gi|148642629|ref|YP_001273142.1| - 0.004 16.7 0.0 0.011 15.3 0.0 1.8 1 0 0 1 1 1 1 HTH domain TFIIE_alpha PF02002.12 gi|148642629|ref|YP_001273142.1| - 0.0041 16.5 1.7 0.0091 15.4 0.0 2.5 2 1 0 2 2 2 1 TFIIE alpha subunit FaeA PF04703.7 gi|148642629|ref|YP_001273142.1| - 0.0059 16.7 0.0 0.017 15.2 0.0 1.7 1 0 0 1 1 1 1 FaeA-like protein FeoC PF09012.5 gi|148642629|ref|YP_001273142.1| - 0.008 15.8 0.0 0.062 13.0 0.0 2.3 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_23 PF13384.1 gi|148642629|ref|YP_001273142.1| - 0.0094 15.5 0.0 0.026 14.1 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|148642629|ref|YP_001273142.1| - 0.012 15.2 0.0 0.033 13.7 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_19 PF12844.2 gi|148642629|ref|YP_001273142.1| - 0.016 15.2 0.1 0.12 12.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|148642629|ref|YP_001273142.1| - 0.018 14.8 0.1 0.051 13.4 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix DUF86 PF01934.12 gi|148642629|ref|YP_001273142.1| - 0.022 14.4 2.2 1.3 8.7 0.2 3.1 1 1 1 2 2 2 0 Protein of unknown function DUF86 DUF2316 PF10078.4 gi|148642629|ref|YP_001273142.1| - 0.025 14.5 0.4 6.1 6.9 0.0 2.8 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2316) Sigma70_r4_2 PF08281.7 gi|148642629|ref|YP_001273142.1| - 0.091 12.2 0.0 0.68 9.4 0.0 2.4 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|148642629|ref|YP_001273142.1| - 0.16 12.0 0.0 0.66 10.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain TctB PF07331.6 gi|148642630|ref|YP_001273143.1| - 0.029 14.0 1.4 0.029 14.0 1.0 3.3 1 1 2 3 3 3 0 Tripartite tricarboxylate transporter TctB family FtsX PF02687.16 gi|148642630|ref|YP_001273143.1| - 0.81 9.4 18.4 0.069 12.9 4.2 2.4 2 0 0 2 2 2 0 FtsX-like permease family IncA PF04156.9 gi|148642630|ref|YP_001273143.1| - 3.1 7.3 8.0 5.3 6.5 2.6 2.7 2 1 1 3 3 3 0 IncA protein Fibrillarin_2 PF10113.4 gi|148642631|ref|YP_001273144.1| - 4.5e-228 757.6 0.5 5.1e-228 757.5 0.4 1.0 1 0 0 1 1 1 1 Fibrillarin-like archaeal protein HMD PF03201.11 gi|148642632|ref|YP_001273145.1| - 1.3e-40 137.2 0.7 4.7e-40 135.4 0.1 2.0 2 0 0 2 2 2 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase IlvN PF07991.7 gi|148642632|ref|YP_001273145.1| - 0.086 12.2 0.0 0.22 10.8 0.0 1.7 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain Radical_SAM PF04055.16 gi|148642633|ref|YP_001273146.1| - 1e-12 48.5 1.2 4.5e-12 46.4 0.1 2.3 3 0 0 3 3 3 1 Radical SAM superfamily BATS PF06968.8 gi|148642633|ref|YP_001273146.1| - 0.0001 22.0 0.5 0.0013 18.4 0.1 2.6 2 1 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain WTX PF09422.5 gi|148642633|ref|YP_001273146.1| - 0.0088 15.0 0.1 0.013 14.4 0.0 1.2 1 0 0 1 1 1 1 WTX protein DUF3236 PF11576.3 gi|148642634|ref|YP_001273147.1| - 1.4e-72 242.1 0.0 1.5e-72 242.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3236) SIS_2 PF13580.1 gi|148642634|ref|YP_001273147.1| - 0.018 14.7 0.0 0.64 9.7 0.0 2.3 2 1 0 2 2 2 0 SIS domain DUF2877 PF11392.3 gi|148642634|ref|YP_001273147.1| - 0.11 12.6 0.0 17 5.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2877) UPF0253 PF06786.7 gi|148642634|ref|YP_001273147.1| - 0.11 12.5 0.2 0.81 9.8 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) DUF1188 PF06690.6 gi|148642635|ref|YP_001273148.1| - 2.5e-62 210.2 9.5 2.9e-62 210.0 6.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) DUF364 PF04016.7 gi|148642635|ref|YP_001273148.1| - 0.074 12.3 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF364) NIF3 PF01784.13 gi|148642636|ref|YP_001273149.1| - 7.6e-40 136.9 0.1 4.2e-31 108.3 0.0 2.0 1 1 1 2 2 2 2 NIF3 (NGG1p interacting factor 3) ThiF PF00899.16 gi|148642637|ref|YP_001273150.1| - 0.00017 21.4 0.3 0.00025 20.8 0.2 1.2 1 0 0 1 1 1 1 ThiF family Peptidase_M29 PF02073.10 gi|148642637|ref|YP_001273150.1| - 0.12 11.1 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Thermophilic metalloprotease (M29) UPF0254 PF06787.6 gi|148642638|ref|YP_001273151.1| - 4.5e-70 234.3 0.9 5.2e-70 234.1 0.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0254) CinA PF02464.12 gi|148642638|ref|YP_001273151.1| - 0.004 16.6 0.1 0.18 11.2 0.0 2.1 2 0 0 2 2 2 2 Competence-damaged protein Fer4_6 PF12837.2 gi|148642639|ref|YP_001273152.1| - 4.2e-14 51.7 18.6 6.8e-10 38.3 3.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|148642639|ref|YP_001273152.1| - 9.2e-14 50.3 22.4 4.4e-09 35.5 5.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642639|ref|YP_001273152.1| - 6.2e-11 42.5 24.6 1.9e-09 37.7 9.2 1.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642639|ref|YP_001273152.1| - 2.5e-10 40.4 29.1 1.3e-08 34.9 11.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642639|ref|YP_001273152.1| - 2.9e-10 39.7 13.4 3.5e-10 39.5 9.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642639|ref|YP_001273152.1| - 5.3e-10 39.9 11.3 5.1e-05 23.9 1.4 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|148642639|ref|YP_001273152.1| - 1.8e-07 30.6 16.5 2.7e-05 23.8 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|148642639|ref|YP_001273152.1| - 4.4e-06 26.4 15.6 8.6e-06 25.5 10.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148642639|ref|YP_001273152.1| - 6.4e-06 26.0 16.8 0.00017 21.6 2.8 2.8 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|148642639|ref|YP_001273152.1| - 5.8e-05 23.3 7.2 0.021 15.1 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|148642639|ref|YP_001273152.1| - 8.2e-05 22.4 6.5 8.8e-05 22.3 4.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148642639|ref|YP_001273152.1| - 0.00019 21.3 11.6 0.001 19.0 8.1 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|148642639|ref|YP_001273152.1| - 0.00022 21.5 19.4 0.0012 19.2 4.4 2.8 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148642639|ref|YP_001273152.1| - 0.0014 19.0 17.3 0.012 15.9 2.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|148642639|ref|YP_001273152.1| - 0.057 13.8 16.2 0.19 12.1 2.3 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|148642639|ref|YP_001273152.1| - 0.075 13.6 20.1 0.18 12.4 3.7 2.6 2 2 0 2 2 2 0 4Fe-4S single cluster domain FpoO PF10621.4 gi|148642639|ref|YP_001273152.1| - 0.13 12.3 3.3 0.14 12.1 2.3 1.1 1 0 0 1 1 1 0 F420H2 dehydrogenase subunit FpoO C1_1 PF00130.17 gi|148642639|ref|YP_001273152.1| - 0.79 9.4 6.3 1.3 8.7 4.4 1.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Regulator_TrmB PF11495.3 gi|148642640|ref|YP_001273153.1| - 0.0067 15.4 0.1 0.012 14.6 0.1 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB DUF4330 PF14221.1 gi|148642640|ref|YP_001273153.1| - 0.016 15.0 1.4 0.06 13.1 0.3 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4330) tRNA_anti-like PF12869.2 gi|148642640|ref|YP_001273153.1| - 0.13 11.7 5.7 0.14 11.6 1.5 2.5 2 1 0 2 2 2 0 tRNA_anti-like DUF70 PF01901.11 gi|148642641|ref|YP_001273154.1| - 1.3e-101 339.9 35.0 2.1e-101 339.2 24.2 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF70 UPF0093 PF03653.8 gi|148642641|ref|YP_001273154.1| - 0.011 15.6 0.3 0.043 13.7 0.1 2.2 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0093) DUF454 PF04304.8 gi|148642641|ref|YP_001273154.1| - 0.02 14.9 1.4 0.02 14.9 1.0 5.1 4 1 1 5 5 5 0 Protein of unknown function (DUF454) DUF2613 PF11021.3 gi|148642641|ref|YP_001273154.1| - 0.066 12.9 0.6 0.21 11.3 0.4 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) PMSR PF01625.16 gi|148642642|ref|YP_001273155.1| - 1e-59 200.9 1.0 1.6e-59 200.2 0.7 1.3 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.13 gi|148642642|ref|YP_001273155.1| - 2.7e-53 178.8 0.0 5.7e-53 177.8 0.0 1.5 1 0 0 1 1 1 1 SelR domain CbiM PF01891.11 gi|148642643|ref|YP_001273156.1| - 2.8e-54 183.8 22.1 3.1e-54 183.6 15.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region EpsG PF14897.1 gi|148642643|ref|YP_001273156.1| - 0.52 9.1 9.2 1.4 7.8 0.8 2.5 2 1 0 2 2 2 0 EpsG family PDGLE PF13190.1 gi|148642644|ref|YP_001273157.1| - 3.3e-16 58.7 0.3 4.3e-16 58.3 0.2 1.1 1 0 0 1 1 1 1 PDGLE domain DUF4179 PF13786.1 gi|148642644|ref|YP_001273157.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) CbiQ PF02361.11 gi|148642645|ref|YP_001273158.1| - 3e-43 147.9 11.7 4.8e-43 147.3 8.1 1.3 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|148642646|ref|YP_001273159.1| - 1.9e-36 125.3 0.0 3e-36 124.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|148642646|ref|YP_001273159.1| - 5.3e-17 62.7 2.4 1.1e-13 51.8 0.3 2.5 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|148642646|ref|YP_001273159.1| - 4.1e-10 39.2 1.1 1.3e-08 34.3 0.7 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|148642646|ref|YP_001273159.1| - 0.00012 21.5 0.0 0.00024 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|148642646|ref|YP_001273159.1| - 0.00023 21.5 4.2 0.00043 20.6 2.9 1.8 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|148642646|ref|YP_001273159.1| - 0.0056 17.1 0.1 0.02 15.4 0.0 1.9 2 1 1 3 3 3 1 Miro-like protein SbcCD_C PF13558.1 gi|148642646|ref|YP_001273159.1| - 0.0062 16.4 0.0 0.028 14.3 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.12 gi|148642646|ref|YP_001273159.1| - 0.013 14.9 0.1 1.8 7.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.1 gi|148642646|ref|YP_001273159.1| - 0.014 15.6 1.2 2.7 8.3 0.6 2.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|148642646|ref|YP_001273159.1| - 0.02 14.0 0.0 0.033 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|148642646|ref|YP_001273159.1| - 0.085 12.7 0.0 0.56 10.1 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|148642646|ref|YP_001273159.1| - 0.087 13.6 0.2 0.29 11.9 0.1 1.9 2 0 0 2 2 2 0 AAA domain YjgP_YjgQ PF03739.9 gi|148642646|ref|YP_001273159.1| - 0.11 11.2 0.1 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family AAA_28 PF13521.1 gi|148642646|ref|YP_001273159.1| - 0.12 12.3 0.1 0.23 11.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain Rubredoxin PF00301.15 gi|148642647|ref|YP_001273160.1| - 0.0022 17.8 5.7 0.058 13.2 1.5 2.4 2 1 0 2 2 2 2 Rubredoxin zf-ribbon_3 PF13248.1 gi|148642647|ref|YP_001273160.1| - 0.0067 15.6 9.6 0.017 14.3 0.1 3.1 2 1 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148642647|ref|YP_001273160.1| - 0.014 14.8 11.5 0.56 9.7 0.5 2.5 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|148642647|ref|YP_001273160.1| - 0.088 12.6 9.2 0.24 11.2 6.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|148642647|ref|YP_001273160.1| - 0.26 11.0 5.3 0.37 10.6 3.6 1.2 1 0 0 1 1 1 0 zinc-ribbons UPF0547 PF10571.4 gi|148642647|ref|YP_001273160.1| - 0.41 10.3 0.1 0.41 10.3 0.1 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|148642647|ref|YP_001273160.1| - 0.56 9.9 6.6 2.7 7.7 4.6 1.9 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family HNH PF01844.18 gi|148642647|ref|YP_001273160.1| - 1 9.3 9.6 2.4 8.0 0.0 3.1 3 0 0 3 3 3 0 HNH endonuclease RNA_POL_M_15KD PF02150.11 gi|148642647|ref|YP_001273160.1| - 4.7 6.9 8.8 0.82 9.4 0.2 3.0 2 1 1 3 3 3 0 RNA polymerases M/15 Kd subunit zf-HIT PF04438.11 gi|148642647|ref|YP_001273160.1| - 4.9 6.8 10.2 13 5.5 4.1 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-piccolo PF05715.8 gi|148642647|ref|YP_001273160.1| - 7 6.7 8.3 40 4.3 5.8 2.2 1 1 0 1 1 1 0 Piccolo Zn-finger FeoA PF04023.9 gi|148642648|ref|YP_001273161.1| - 2e-14 53.2 0.0 2.2e-14 53.1 0.0 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.13 gi|148642649|ref|YP_001273162.1| - 2.2e-63 212.2 1.0 4.2e-63 211.3 0.2 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B Gate PF07670.9 gi|148642649|ref|YP_001273162.1| - 7.4e-50 167.4 17.2 4.2e-31 107.0 2.6 2.9 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.7 gi|148642649|ref|YP_001273162.1| - 1e-23 82.4 2.2 1e-23 82.4 1.5 3.9 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|148642649|ref|YP_001273162.1| - 4.5e-17 62.0 0.8 8e-16 58.0 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|148642649|ref|YP_001273162.1| - 7.7e-06 25.2 0.0 1.2e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AAA_17 PF13207.1 gi|148642649|ref|YP_001273162.1| - 0.15 12.9 0.2 7.3 7.4 0.0 2.8 2 2 0 2 2 2 0 AAA domain DUF4012 PF13196.1 gi|148642652|ref|YP_001273165.1| - 3.2e-34 118.1 0.1 4.8e-34 117.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4012) DUF2326 PF10088.4 gi|148642652|ref|YP_001273165.1| - 0.0021 17.6 0.1 0.0039 16.8 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2326) DUF1510 PF07423.6 gi|148642652|ref|YP_001273165.1| - 0.067 12.5 0.1 0.088 12.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1510) ABC_tran PF00005.22 gi|148642653|ref|YP_001273166.1| - 1.7e-27 96.4 0.1 5.6e-27 94.7 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|148642653|ref|YP_001273166.1| - 1.8e-10 41.2 10.7 5.2e-10 39.7 2.4 2.9 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|148642653|ref|YP_001273166.1| - 0.0045 16.0 13.6 0.011 14.7 0.0 2.9 2 1 1 3 3 3 2 AAA ATPase domain SRP54 PF00448.17 gi|148642653|ref|YP_001273166.1| - 0.037 13.4 0.0 0.075 12.4 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.18 gi|148642653|ref|YP_001273166.1| - 0.042 13.7 0.1 0.26 11.2 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|148642653|ref|YP_001273166.1| - 0.044 12.9 0.0 0.12 11.5 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|148642653|ref|YP_001273166.1| - 0.068 13.3 0.2 0.31 11.1 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|148642653|ref|YP_001273166.1| - 0.13 11.8 0.1 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC2_membrane_4 PF12730.2 gi|148642654|ref|YP_001273167.1| - 3.6e-27 95.0 36.3 4.3e-27 94.7 25.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|148642654|ref|YP_001273167.1| - 1.7e-09 36.9 24.8 6.9e-09 34.9 17.2 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|148642654|ref|YP_001273167.1| - 0.00095 18.5 34.9 0.0029 16.9 24.2 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|148642655|ref|YP_001273168.1| - 4.2e-25 88.2 37.3 5.1e-25 87.9 25.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|148642655|ref|YP_001273168.1| - 3.2e-10 39.3 25.8 1.5e-09 37.1 17.9 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|148642655|ref|YP_001273168.1| - 0.0049 15.9 33.8 0.0061 15.6 22.8 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|148642655|ref|YP_001273168.1| - 0.082 12.1 38.5 0.22 10.7 26.7 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein T2SF PF00482.18 gi|148642656|ref|YP_001273169.1| - 6.2e-16 58.4 1.1 6.2e-16 58.4 0.7 2.5 3 1 0 3 3 3 1 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|148642657|ref|YP_001273170.1| - 1.7e-65 220.6 0.1 2.7e-65 220.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|148642657|ref|YP_001273170.1| - 0.0041 16.6 0.1 0.009 15.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Dynamin_N PF00350.18 gi|148642657|ref|YP_001273170.1| - 0.0073 16.1 0.0 0.11 12.3 0.0 2.4 2 0 0 2 2 2 1 Dynamin family AAA_28 PF13521.1 gi|148642657|ref|YP_001273170.1| - 0.012 15.6 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|148642657|ref|YP_001273170.1| - 0.021 15.1 0.3 0.068 13.4 0.0 2.0 2 0 0 2 2 2 0 ABC transporter FtsK_SpoIIIE PF01580.13 gi|148642657|ref|YP_001273170.1| - 0.031 13.7 1.8 0.1 12.0 0.9 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family IZUMO PF15005.1 gi|148642657|ref|YP_001273170.1| - 0.15 12.0 1.2 15 5.6 0.1 2.4 2 0 0 2 2 2 0 Izumo sperm-egg fusion AAA_18 PF13238.1 gi|148642657|ref|YP_001273170.1| - 0.64 10.3 6.4 4 7.7 0.0 3.5 3 1 0 3 3 3 0 AAA domain MTS PF05175.9 gi|148642658|ref|YP_001273171.1| - 3.9e-05 23.0 0.0 7.8e-05 22.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|148642658|ref|YP_001273171.1| - 0.00088 18.7 0.0 0.0018 17.7 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|148642658|ref|YP_001273171.1| - 0.005 17.4 0.0 0.01 16.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|148642658|ref|YP_001273171.1| - 0.0081 15.3 0.0 0.014 14.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|148642658|ref|YP_001273171.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TRM PF02005.11 gi|148642658|ref|YP_001273171.1| - 0.016 14.1 0.3 0.025 13.5 0.2 1.4 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase CbiA PF01656.18 gi|148642658|ref|YP_001273171.1| - 0.21 11.0 2.2 0.39 10.1 1.5 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain LAGLIDADG_WhiA PF14527.1 gi|148642658|ref|YP_001273171.1| - 0.65 9.9 2.8 1.4 8.8 0.0 2.6 3 0 0 3 3 3 0 WhiA LAGLIDADG-like domain Metallothio_2 PF01439.13 gi|148642658|ref|YP_001273171.1| - 2.7 8.6 9.3 1.4 9.5 4.0 2.2 2 0 0 2 2 2 0 Metallothionein TctA PF01970.11 gi|148642659|ref|YP_001273172.1| - 2.1e-68 230.6 43.4 2.5e-68 230.4 30.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Form-deh_trans PF09163.6 gi|148642659|ref|YP_001273172.1| - 1.2 8.6 4.0 1.3 8.6 0.2 2.5 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane MarR_2 PF12802.2 gi|148642660|ref|YP_001273173.1| - 1.7e-09 37.2 0.0 1.5e-08 34.2 0.0 2.0 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|148642660|ref|YP_001273173.1| - 5e-09 35.7 0.0 2.5e-08 33.4 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|148642660|ref|YP_001273173.1| - 9.4e-07 28.5 0.2 7.3e-06 25.6 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|148642660|ref|YP_001273173.1| - 2.4e-06 27.1 0.2 9.8e-05 21.9 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|148642660|ref|YP_001273173.1| - 6e-05 22.3 0.1 0.0012 18.2 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|148642660|ref|YP_001273173.1| - 6.2e-05 23.2 0.0 0.00012 22.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|148642660|ref|YP_001273173.1| - 0.0053 16.3 0.1 0.0066 16.0 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_20 PF12840.2 gi|148642660|ref|YP_001273173.1| - 0.013 15.3 0.1 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.16 gi|148642660|ref|YP_001273173.1| - 0.019 14.3 0.2 1.2 8.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|148642660|ref|YP_001273173.1| - 0.026 14.0 0.5 0.15 11.7 0.0 2.2 2 1 0 2 2 2 0 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|148642660|ref|YP_001273173.1| - 0.033 14.2 0.0 0.14 12.2 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain HxlR PF01638.12 gi|148642660|ref|YP_001273173.1| - 0.04 13.5 0.0 0.061 12.9 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|148642660|ref|YP_001273173.1| - 0.047 13.7 0.4 0.23 11.5 0.1 1.9 1 1 1 2 2 2 0 Winged helix DNA-binding domain Sigma70_r3 PF04539.11 gi|148642660|ref|YP_001273173.1| - 0.059 13.2 0.9 0.58 10.0 0.2 2.3 2 0 0 2 2 2 0 Sigma-70 region 3 DDE_Tnp_IS66 PF03050.9 gi|148642661|ref|YP_001273174.1| - 4.5e-08 32.6 3.0 2.4e-07 30.2 2.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family Zn_Tnp_IS1595 PF12760.2 gi|148642661|ref|YP_001273174.1| - 0.00061 19.5 2.0 0.0015 18.2 1.4 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148642661|ref|YP_001273174.1| - 0.03 13.6 1.7 0.28 10.5 1.1 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|148642661|ref|YP_001273174.1| - 0.063 13.2 3.8 3.5 7.6 1.0 2.8 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|148642661|ref|YP_001273174.1| - 0.098 12.9 0.2 0.31 11.3 0.1 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|148642661|ref|YP_001273174.1| - 0.33 10.6 4.6 6 6.5 3.2 2.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|148642661|ref|YP_001273174.1| - 0.68 10.0 9.3 0.53 10.3 0.4 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TetR_C_8 PF14278.1 gi|148642661|ref|YP_001273174.1| - 1.3 9.4 6.9 0.75 10.2 0.5 3.6 2 1 0 3 3 3 0 Transcriptional regulator C-terminal region Transposase_mut PF00872.13 gi|148642661|ref|YP_001273174.1| - 4.1 5.8 7.2 25 3.2 2.6 2.9 2 1 1 3 3 3 0 Transposase, Mutator family EF1_GNE PF00736.14 gi|148642662|ref|YP_001273175.1| - 2.7e-22 78.2 0.2 2.8e-22 78.1 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain zinc_ribbon_2 PF13240.1 gi|148642663|ref|YP_001273176.1| - 9.3e-05 21.7 2.1 9.3e-05 21.7 1.4 2.9 3 0 0 3 3 3 1 zinc-ribbon domain tRNA-synt_1g PF09334.6 gi|148642663|ref|YP_001273176.1| - 0.063 11.9 1.6 0.06 11.9 1.1 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) zf-H2C2_2 PF13465.1 gi|148642663|ref|YP_001273176.1| - 0.4 11.0 0.3 0.4 11.0 0.2 3.5 2 1 1 3 3 3 0 Zinc-finger double domain DiS_P_DiS PF06750.8 gi|148642663|ref|YP_001273176.1| - 0.54 10.0 4.5 0.24 11.1 0.2 2.1 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain DUF4475 PF14753.1 gi|148642663|ref|YP_001273176.1| - 0.54 9.7 5.6 0.64 9.4 3.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4475) HypA PF01155.14 gi|148642663|ref|YP_001273176.1| - 0.6 9.8 6.9 1.4 8.6 4.8 1.7 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|148642663|ref|YP_001273176.1| - 0.65 9.8 10.2 6 6.7 7.1 2.3 1 1 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|148642663|ref|YP_001273176.1| - 0.7 9.6 5.8 0.35 10.6 2.6 1.8 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Sgf11 PF08209.6 gi|148642663|ref|YP_001273176.1| - 0.96 8.8 7.7 17 4.8 0.1 3.0 2 1 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_5 PF13719.1 gi|148642663|ref|YP_001273176.1| - 3.8 7.1 11.2 13 5.4 0.5 3.3 2 1 1 3 3 3 0 zinc-ribbon domain zf-CCHC_6 PF15288.1 gi|148642663|ref|YP_001273176.1| - 5.4 6.7 10.1 0.91 9.2 3.2 2.3 2 1 0 2 2 2 0 Zinc knuckle zinc_ribbon_4 PF13717.1 gi|148642663|ref|YP_001273176.1| - 6.6 6.5 12.4 13 5.5 0.5 3.3 2 1 1 3 3 3 0 zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|148642663|ref|YP_001273176.1| - 7.6 6.1 9.4 4.5 6.9 0.6 3.1 1 1 2 3 3 3 0 Sec23/Sec24 zinc finger AA_kinase PF00696.23 gi|148642664|ref|YP_001273177.1| - 2.6e-11 43.5 0.0 3.9e-11 42.9 0.0 1.5 1 1 0 1 1 1 1 Amino acid kinase family PTH2 PF01981.11 gi|148642665|ref|YP_001273178.1| - 5.1e-42 142.2 0.1 5.6e-42 142.0 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 G10 PF01125.12 gi|148642665|ref|YP_001273178.1| - 0.016 14.7 0.1 0.02 14.4 0.1 1.3 1 0 0 1 1 1 0 G10 protein DUF1628 PF07790.6 gi|148642666|ref|YP_001273179.1| - 0.066 13.9 0.1 0.1 13.3 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) DUF4097 PF13349.1 gi|148642666|ref|YP_001273179.1| - 0.47 9.9 3.8 1.2 8.6 2.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4097) ABC_tran PF00005.22 gi|148642667|ref|YP_001273180.1| - 1.1e-38 132.6 0.0 2.6e-18 66.6 0.0 2.9 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|148642667|ref|YP_001273180.1| - 6.7e-10 38.5 4.7 0.00044 19.5 0.4 3.9 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|148642667|ref|YP_001273180.1| - 1.6e-09 38.1 7.0 0.02 14.8 0.6 4.4 2 2 0 2 2 2 2 AAA domain RLI PF04068.10 gi|148642667|ref|YP_001273180.1| - 1.3e-08 34.2 3.3 2.5e-08 33.3 2.3 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|148642667|ref|YP_001273180.1| - 5.4e-07 28.9 2.0 5.4e-07 28.9 1.4 2.6 3 0 0 3 3 2 1 4Fe-4S binding domain DUF258 PF03193.11 gi|148642667|ref|YP_001273180.1| - 8e-06 25.1 0.0 0.021 13.9 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|148642667|ref|YP_001273180.1| - 1.1e-05 24.7 0.0 0.88 8.5 0.1 3.8 2 2 1 4 4 4 2 AAA ATPase domain AAA_17 PF13207.1 gi|148642667|ref|YP_001273180.1| - 0.0001 23.1 0.3 0.26 12.0 0.0 3.1 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|148642667|ref|YP_001273180.1| - 0.00036 20.6 0.0 0.54 10.4 0.0 2.6 2 0 0 2 2 2 1 RNA helicase SbcCD_C PF13558.1 gi|148642667|ref|YP_001273180.1| - 0.00038 20.3 0.2 1.5 8.7 0.1 3.3 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|148642667|ref|YP_001273180.1| - 0.00068 20.0 0.9 0.18 12.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain Fer4_7 PF12838.2 gi|148642667|ref|YP_001273180.1| - 0.00095 19.5 8.1 0.0018 18.6 5.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA PF00004.24 gi|148642667|ref|YP_001273180.1| - 0.0014 18.7 0.7 2.4 8.3 0.4 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Fer4_21 PF14697.1 gi|148642667|ref|YP_001273180.1| - 0.0017 18.2 8.4 0.003 17.3 5.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148642667|ref|YP_001273180.1| - 0.0018 18.0 10.9 0.0029 17.3 1.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Rad17 PF03215.10 gi|148642667|ref|YP_001273180.1| - 0.0025 16.5 0.0 0.072 11.7 0.0 2.1 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|148642667|ref|YP_001273180.1| - 0.0026 17.2 0.3 0.063 12.8 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|148642667|ref|YP_001273180.1| - 0.003 17.6 0.1 0.61 10.2 0.0 3.1 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|148642667|ref|YP_001273180.1| - 0.0064 16.3 0.9 1.2 9.0 0.1 3.4 2 2 0 2 2 2 1 AAA domain Fer4_9 PF13187.1 gi|148642667|ref|YP_001273180.1| - 0.0074 16.5 9.4 0.014 15.6 6.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642667|ref|YP_001273180.1| - 0.0091 15.8 1.7 0.0091 15.8 1.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_25 PF13481.1 gi|148642667|ref|YP_001273180.1| - 0.012 15.0 0.1 1.8 7.8 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|148642667|ref|YP_001273180.1| - 0.017 13.6 0.1 0.41 9.0 0.0 2.6 3 0 0 3 3 3 0 AAA domain Fer4_10 PF13237.1 gi|148642667|ref|YP_001273180.1| - 0.018 14.8 11.7 0.033 13.9 1.4 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_10 PF12846.2 gi|148642667|ref|YP_001273180.1| - 0.02 14.3 0.6 2.8 7.2 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain NACHT PF05729.7 gi|148642667|ref|YP_001273180.1| - 0.026 14.1 0.9 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 NACHT domain Fer4_16 PF13484.1 gi|148642667|ref|YP_001273180.1| - 0.029 15.0 6.1 0.047 14.4 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain AAA_24 PF13479.1 gi|148642667|ref|YP_001273180.1| - 0.033 13.7 0.6 1.8 8.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|148642667|ref|YP_001273180.1| - 0.034 13.0 2.0 8.3 5.1 0.2 3.3 4 0 0 4 4 4 0 NB-ARC domain VirE PF05272.6 gi|148642667|ref|YP_001273180.1| - 0.061 12.7 0.0 8.5 5.7 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E AAA_18 PF13238.1 gi|148642667|ref|YP_001273180.1| - 0.078 13.2 0.9 4.2 7.6 0.0 3.3 2 2 1 3 3 2 0 AAA domain AAA_14 PF13173.1 gi|148642667|ref|YP_001273180.1| - 0.091 12.6 0.2 8.8 6.2 0.0 3.3 3 1 0 3 3 2 0 AAA domain AAA_28 PF13521.1 gi|148642667|ref|YP_001273180.1| - 0.092 12.7 0.3 10 6.0 0.1 2.6 3 0 0 3 3 2 0 AAA domain Miro PF08477.8 gi|148642667|ref|YP_001273180.1| - 0.13 12.7 0.0 1.8 9.1 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein MMR_HSR1 PF01926.18 gi|148642667|ref|YP_001273180.1| - 0.14 12.1 0.1 2.6 8.0 0.0 2.6 2 1 0 2 2 2 0 50S ribosome-binding GTPase Fer4_8 PF13183.1 gi|148642667|ref|YP_001273180.1| - 0.16 12.0 4.7 0.42 10.6 3.3 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|148642667|ref|YP_001273180.1| - 0.22 11.4 2.5 0.4 10.6 1.7 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148642667|ref|YP_001273180.1| - 1.3 9.5 12.4 0.97 9.9 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148642667|ref|YP_001273180.1| - 2.2 8.7 8.1 38 4.7 5.6 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain DGC PF08859.6 gi|148642668|ref|YP_001273181.1| - 1.2e-19 70.1 0.7 1.5e-19 69.8 0.5 1.1 1 0 0 1 1 1 1 DGC domain Fer4_8 PF13183.1 gi|148642669|ref|YP_001273182.1| - 1.1e-05 25.4 3.6 0.014 15.4 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642669|ref|YP_001273182.1| - 4.5e-05 24.1 14.5 0.003 18.2 4.0 2.7 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|148642669|ref|YP_001273182.1| - 7e-05 22.5 10.9 0.01 15.6 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148642669|ref|YP_001273182.1| - 0.00017 21.7 10.1 0.00063 19.9 7.0 2.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148642669|ref|YP_001273182.1| - 0.0002 20.7 13.0 0.011 15.3 3.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148642669|ref|YP_001273182.1| - 0.00086 19.0 11.9 0.084 12.6 9.5 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|148642669|ref|YP_001273182.1| - 0.0024 18.2 13.6 0.3 11.7 1.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642669|ref|YP_001273182.1| - 0.0028 18.0 11.5 0.022 15.1 8.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642669|ref|YP_001273182.1| - 0.0053 17.0 8.2 0.31 11.4 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642669|ref|YP_001273182.1| - 0.016 15.0 10.1 0.016 15.0 7.0 2.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642669|ref|YP_001273182.1| - 0.019 14.8 13.8 0.3 11.0 3.9 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148642669|ref|YP_001273182.1| - 0.089 13.1 14.2 0.78 10.2 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148642669|ref|YP_001273182.1| - 1.3 9.4 8.7 4.4 7.7 1.2 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Aminotran_1_2 PF00155.16 gi|148642670|ref|YP_001273183.1| - 1e-40 139.7 0.0 1.2e-40 139.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|148642670|ref|YP_001273183.1| - 2.7e-07 29.6 0.0 0.00023 20.0 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|148642670|ref|YP_001273183.1| - 4e-05 22.9 0.0 4.9e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Alliinase_C PF04864.8 gi|148642670|ref|YP_001273183.1| - 0.035 12.7 0.0 0.19 10.3 0.0 2.0 2 0 0 2 2 2 0 Allinase Cys_Met_Meta_PP PF01053.15 gi|148642670|ref|YP_001273183.1| - 0.096 10.9 0.0 0.13 10.4 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Rad51 PF08423.6 gi|148642671|ref|YP_001273184.1| - 2e-28 98.9 0.1 2.5e-28 98.6 0.1 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|148642671|ref|YP_001273184.1| - 1.4e-19 70.3 0.0 2e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|148642671|ref|YP_001273184.1| - 1.1e-12 47.5 0.4 1.5e-12 47.1 0.3 1.1 1 0 0 1 1 1 1 KaiC RecA PF00154.16 gi|148642671|ref|YP_001273184.1| - 1e-11 44.4 0.1 1.3e-11 44.1 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.7 gi|148642671|ref|YP_001273184.1| - 3.9e-07 29.7 0.1 4.8e-07 29.4 0.1 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_10 PF12846.2 gi|148642671|ref|YP_001273184.1| - 2e-05 24.1 0.5 0.00086 18.8 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain CbiA PF01656.18 gi|148642671|ref|YP_001273184.1| - 3.7e-05 23.2 0.2 8.5e-05 22.0 0.1 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.12 gi|148642671|ref|YP_001273184.1| - 0.00016 21.1 0.0 0.00054 19.4 0.0 1.8 1 1 0 1 1 1 1 IstB-like ATP binding protein ABC_tran PF00005.22 gi|148642671|ref|YP_001273184.1| - 0.00017 21.9 0.3 0.00025 21.3 0.2 1.5 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.1 gi|148642671|ref|YP_001273184.1| - 0.00025 21.3 0.3 0.0038 17.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|148642671|ref|YP_001273184.1| - 0.00027 20.7 0.1 0.00044 20.0 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase AAA_31 PF13614.1 gi|148642671|ref|YP_001273184.1| - 0.0038 17.1 0.0 0.0087 16.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|148642671|ref|YP_001273184.1| - 0.0047 16.1 0.0 0.0089 15.2 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 DUF2075 PF09848.4 gi|148642671|ref|YP_001273184.1| - 0.0079 15.2 0.1 0.0098 14.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|148642671|ref|YP_001273184.1| - 0.0095 15.1 0.0 0.018 14.2 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein TrwB_AAD_bind PF10412.4 gi|148642671|ref|YP_001273184.1| - 0.014 14.0 0.2 0.03 12.9 0.0 1.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.1 gi|148642671|ref|YP_001273184.1| - 0.022 14.4 0.0 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain ArsA_ATPase PF02374.10 gi|148642671|ref|YP_001273184.1| - 0.024 13.6 0.1 0.036 13.0 0.1 1.4 1 1 0 1 1 1 0 Anion-transporting ATPase MipZ PF09140.6 gi|148642671|ref|YP_001273184.1| - 0.028 13.5 0.2 0.048 12.7 0.1 1.5 1 1 0 1 1 1 0 ATPase MipZ AAA_17 PF13207.1 gi|148642671|ref|YP_001273184.1| - 0.036 14.8 0.2 0.16 12.8 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|148642671|ref|YP_001273184.1| - 0.045 13.6 0.1 0.24 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.10 gi|148642671|ref|YP_001273184.1| - 0.053 12.4 0.6 3.7 6.3 0.0 2.1 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain AAA_24 PF13479.1 gi|148642671|ref|YP_001273184.1| - 0.064 12.8 0.0 0.094 12.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|148642671|ref|YP_001273184.1| - 0.082 12.6 0.1 0.23 11.1 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|148642671|ref|YP_001273184.1| - 0.083 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ATP-synt_ab PF00006.20 gi|148642671|ref|YP_001273184.1| - 0.088 12.2 0.0 0.1 12.0 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SMC_N PF02463.14 gi|148642671|ref|YP_001273184.1| - 0.15 11.2 0.3 0.28 10.3 0.2 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Sua5_yciO_yrdC PF01300.13 gi|148642672|ref|YP_001273185.1| - 2.4e-48 163.7 0.0 2.7e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination CDP-OH_P_transf PF01066.16 gi|148642673|ref|YP_001273186.1| - 8.6e-18 64.5 5.7 8.6e-18 64.5 3.9 2.0 1 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Bac_rhodopsin PF01036.13 gi|148642673|ref|YP_001273186.1| - 0.24 10.7 9.8 1.7 7.8 7.3 2.0 1 1 1 2 2 2 0 Bacteriorhodopsin-like protein DUF2976 PF11190.3 gi|148642673|ref|YP_001273186.1| - 1.6 8.3 8.0 0.22 11.0 0.4 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF2976) TrbC PF04956.8 gi|148642673|ref|YP_001273186.1| - 8.5 6.4 13.1 0.83 9.7 0.8 3.3 2 1 0 2 2 2 0 TrbC/VIRB2 family DUF357 PF04010.8 gi|148642674|ref|YP_001273187.1| - 2.4e-22 78.3 0.3 2.8e-22 78.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF3417 PF11897.3 gi|148642674|ref|YP_001273187.1| - 0.072 13.0 0.1 0.08 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3417) FBPase_3 PF01950.11 gi|148642675|ref|YP_001273188.1| - 3e-189 628.5 0.0 3.4e-189 628.4 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase DUF4399 PF14347.1 gi|148642676|ref|YP_001273189.1| - 6.3e-19 67.7 0.1 7.5e-05 22.6 0.0 7.2 7 1 1 8 8 8 3 Domain of unknown function (DUF4399) Beta_helix PF13229.1 gi|148642676|ref|YP_001273189.1| - 0.0014 18.3 34.4 0.0014 18.3 23.8 19.4 7 4 7 16 16 16 2 Right handed beta helix region Peptidase_C39 PF03412.10 gi|148642676|ref|YP_001273189.1| - 0.0023 17.7 0.2 0.16 11.7 0.0 2.7 2 0 0 2 2 2 1 Peptidase C39 family Lsr2 PF11774.3 gi|148642676|ref|YP_001273189.1| - 0.003 17.4 1.6 44 4.0 0.0 4.9 5 0 0 5 5 5 0 Lsr2 MliC PF09864.4 gi|148642676|ref|YP_001273189.1| - 3.7 7.3 8.4 2.1e+02 1.7 0.0 6.4 6 0 0 6 6 6 0 Membrane-bound lysozyme-inhibitor of c-type lysozyme ThiI PF02568.9 gi|148642677|ref|YP_001273190.1| - 1.3e-66 223.8 0.0 1.8e-66 223.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|148642677|ref|YP_001273190.1| - 1.2e-21 77.0 1.5 2.2e-21 76.2 0.1 2.1 2 1 1 3 3 3 1 THUMP domain tRNA_Me_trans PF03054.11 gi|148642677|ref|YP_001273190.1| - 2.7e-05 22.9 0.0 5e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase QueC PF06508.8 gi|148642677|ref|YP_001273190.1| - 3.3e-05 23.2 0.1 0.0057 15.9 0.0 2.6 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|148642677|ref|YP_001273190.1| - 0.0048 15.8 0.1 0.01 14.7 0.0 1.6 1 1 0 1 1 1 1 NAD synthase DUF561 PF04481.7 gi|148642677|ref|YP_001273190.1| - 0.022 13.6 0.0 0.047 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Asn_synthase PF00733.16 gi|148642677|ref|YP_001273190.1| - 0.037 13.5 0.0 0.056 12.9 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.14 gi|148642677|ref|YP_001273190.1| - 0.055 13.2 0.0 0.12 12.1 0.0 1.6 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Oxidored_nitro PF00148.14 gi|148642677|ref|YP_001273190.1| - 0.064 11.8 0.0 0.43 9.1 0.0 2.1 1 1 2 3 3 3 0 Nitrogenase component 1 type Oxidoreductase ATP_bind_4 PF01902.12 gi|148642677|ref|YP_001273190.1| - 0.12 11.6 0.0 0.27 10.5 0.0 1.6 1 0 0 1 1 1 0 ATP-binding region Na_H_Exchanger PF00999.16 gi|148642678|ref|YP_001273191.1| - 1.8e-45 155.0 49.8 2.2e-45 154.8 34.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family PrgI PF12666.2 gi|148642678|ref|YP_001273191.1| - 0.08 13.0 0.1 0.08 13.0 0.0 5.2 1 1 3 5 5 5 0 PrgI family protein tRNA-synt_2c PF01411.14 gi|148642679|ref|YP_001273192.1| - 1.2e-123 413.3 0.1 1.7e-123 412.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|148642679|ref|YP_001273192.1| - 1.2e-12 47.5 0.3 5.1e-12 45.4 0.3 2.1 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|148642679|ref|YP_001273192.1| - 3.1e-07 30.0 3.9 7.9e-07 28.6 2.7 1.7 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2e PF02091.10 gi|148642679|ref|YP_001273192.1| - 0.0043 16.1 0.1 0.0075 15.3 0.0 1.3 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit HTH_19 PF12844.2 gi|148642679|ref|YP_001273192.1| - 0.052 13.6 0.0 3 7.9 0.0 2.9 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1305 PF06996.6 gi|148642679|ref|YP_001273192.1| - 0.23 10.4 0.0 0.35 9.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1305) DUF4379 PF14311.1 gi|148642679|ref|YP_001273192.1| - 1.4 8.8 3.2 1.4 8.7 0.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) Ribosomal_60s PF00428.14 gi|148642680|ref|YP_001273193.1| - 3e-16 59.5 26.1 3.6e-16 59.3 18.1 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein Sigma70_ner PF04546.8 gi|148642680|ref|YP_001273193.1| - 0.038 13.6 9.7 0.047 13.2 6.7 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region CENP-T PF15511.1 gi|148642680|ref|YP_001273193.1| - 0.045 12.9 2.8 0.045 13.0 2.0 1.0 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T DUF4139 PF13598.1 gi|148642680|ref|YP_001273193.1| - 0.048 12.9 2.2 0.045 13.0 1.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4139) Gly-zipper_OmpA PF13436.1 gi|148642680|ref|YP_001273193.1| - 0.11 12.1 3.7 0.14 11.7 2.5 1.4 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain HCMV_UL139 PF12507.3 gi|148642680|ref|YP_001273193.1| - 0.15 12.1 1.6 0.24 11.5 1.1 1.2 1 0 0 1 1 1 0 Human Cytomegalovirus UL139 protein YicC_N PF03755.8 gi|148642680|ref|YP_001273193.1| - 0.32 10.9 3.7 0.39 10.6 2.6 1.2 1 0 0 1 1 1 0 YicC-like family, N-terminal region DUF1631 PF07793.6 gi|148642680|ref|YP_001273193.1| - 0.51 8.4 5.6 0.57 8.2 3.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) UBN_AB PF14075.1 gi|148642680|ref|YP_001273193.1| - 0.53 9.9 2.2 0.61 9.7 1.5 1.1 1 0 0 1 1 1 0 Ubinuclein conserved middle domain DUF4611 PF15387.1 gi|148642680|ref|YP_001273193.1| - 0.61 10.2 5.4 0.86 9.7 3.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) PepSY_2 PF13670.1 gi|148642680|ref|YP_001273193.1| - 1.1 9.2 12.6 17 5.3 0.0 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Myc_N PF01056.13 gi|148642680|ref|YP_001273193.1| - 1.1 8.2 5.6 1.2 8.2 3.9 1.1 1 0 0 1 1 1 0 Myc amino-terminal region Ribosomal_L10 PF00466.15 gi|148642681|ref|YP_001273194.1| - 4.5e-23 81.0 2.4 6.5e-23 80.5 0.5 2.0 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|148642681|ref|YP_001273194.1| - 2.9e-06 27.5 11.2 2.9e-06 27.5 7.8 2.4 2 0 0 2 2 2 1 60s Acidic ribosomal protein DUF713 PF05218.9 gi|148642681|ref|YP_001273194.1| - 0.1 12.3 0.7 0.38 10.4 0.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF713) Ribosomal_L1 PF00687.16 gi|148642682|ref|YP_001273195.1| - 1.2e-46 158.7 0.8 1.5e-46 158.5 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.9 gi|148642683|ref|YP_001273196.1| - 1.3e-24 85.4 0.3 2.1e-24 84.7 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|148642683|ref|YP_001273196.1| - 7.4e-20 70.8 0.1 1.4e-19 69.9 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Spt5-NGN PF03439.8 gi|148642684|ref|YP_001273197.1| - 1e-19 70.0 0.1 2e-19 69.1 0.0 1.5 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|148642684|ref|YP_001273197.1| - 4.3e-08 32.5 0.2 1e-07 31.3 0.1 1.6 1 0 0 1 1 1 1 KOW motif NusG PF02357.14 gi|148642684|ref|YP_001273197.1| - 5.9e-05 23.2 0.1 0.00043 20.4 0.0 2.3 2 1 0 2 2 2 1 Transcription termination factor nusG SecE PF00584.15 gi|148642685|ref|YP_001273198.1| - 1.4e-06 27.7 0.1 1.6e-06 27.5 0.1 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex DUF2976 PF11190.3 gi|148642685|ref|YP_001273198.1| - 0.054 13.0 0.2 0.057 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) TPR_1 PF00515.23 gi|148642685|ref|YP_001273198.1| - 0.097 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat SKG6 PF08693.5 gi|148642685|ref|YP_001273198.1| - 7.6 5.9 7.4 12 5.2 5.1 1.2 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Tubulin PF00091.20 gi|148642686|ref|YP_001273199.1| - 3.3e-36 125.1 0.3 1.7e-35 122.7 0.2 2.0 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|148642686|ref|YP_001273199.1| - 2.9e-35 120.2 4.2 4.4e-35 119.6 1.1 2.4 2 1 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.1 gi|148642686|ref|YP_001273199.1| - 0.018 13.9 0.1 0.11 11.3 0.0 2.1 2 0 0 2 2 2 0 Tubulin like ThiF PF00899.16 gi|148642686|ref|YP_001273199.1| - 0.042 13.6 0.4 0.28 11.0 0.1 2.4 2 0 0 2 2 2 0 ThiF family IIGP PF05049.8 gi|148642686|ref|YP_001273199.1| - 0.054 12.3 0.3 0.1 11.4 0.2 1.4 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) VWA_2 PF13519.1 gi|148642686|ref|YP_001273199.1| - 0.08 13.0 1.4 1.3 9.0 0.0 2.8 2 1 0 3 3 3 0 von Willebrand factor type A domain MtrH PF02007.13 gi|148642687|ref|YP_001273200.1| - 2.7e-132 440.2 0.8 3.1e-132 440.0 0.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit PK_C PF02887.11 gi|148642688|ref|YP_001273201.1| - 3.4e-14 52.3 0.0 4.6e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain DDE_Tnp_IS66 PF03050.9 gi|148642689|ref|YP_001273202.1| - 4.5e-08 32.6 3.0 2.4e-07 30.2 2.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family Zn_Tnp_IS1595 PF12760.2 gi|148642689|ref|YP_001273202.1| - 0.00061 19.5 2.0 0.0015 18.2 1.4 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148642689|ref|YP_001273202.1| - 0.03 13.6 1.7 0.28 10.5 1.1 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|148642689|ref|YP_001273202.1| - 0.063 13.2 3.8 3.5 7.6 1.0 2.8 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|148642689|ref|YP_001273202.1| - 0.098 12.9 0.2 0.31 11.3 0.1 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|148642689|ref|YP_001273202.1| - 0.33 10.6 4.6 6 6.5 3.2 2.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|148642689|ref|YP_001273202.1| - 0.68 10.0 9.3 0.53 10.3 0.4 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TetR_C_8 PF14278.1 gi|148642689|ref|YP_001273202.1| - 1.3 9.4 6.9 0.75 10.2 0.5 3.6 2 1 0 3 3 3 0 Transcriptional regulator C-terminal region Transposase_mut PF00872.13 gi|148642689|ref|YP_001273202.1| - 4.1 5.8 7.2 25 3.2 2.6 2.9 2 1 1 3 3 3 0 Transposase, Mutator family F420_ligase PF01996.11 gi|148642690|ref|YP_001273203.1| - 1.4e-42 145.3 0.0 1.9e-42 144.8 0.0 1.3 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase TFIIE_alpha PF02002.12 gi|148642691|ref|YP_001273204.1| - 6e-25 86.7 3.6 6e-25 86.7 2.5 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit DUF2250 PF10007.4 gi|148642691|ref|YP_001273204.1| - 2.8e-05 23.9 0.6 0.0016 18.2 0.1 2.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) TF_Zn_Ribbon PF08271.7 gi|148642691|ref|YP_001273204.1| - 0.0012 18.1 4.6 0.0015 17.8 1.2 2.6 2 1 1 3 3 3 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|148642691|ref|YP_001273204.1| - 0.029 14.1 2.1 0.59 9.9 0.6 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon TrmB PF01978.14 gi|148642691|ref|YP_001273204.1| - 0.045 13.4 0.1 0.12 12.0 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Zn-ribbon_8 PF09723.5 gi|148642691|ref|YP_001273204.1| - 0.057 13.3 0.2 0.17 11.8 0.1 1.8 1 0 0 1 1 1 0 Zinc ribbon domain Rrf2 PF02082.15 gi|148642691|ref|YP_001273204.1| - 0.06 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_9 PF08221.6 gi|148642691|ref|YP_001273204.1| - 0.088 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain zinc_ribbon_2 PF13240.1 gi|148642691|ref|YP_001273204.1| - 0.17 11.4 0.6 0.5 9.9 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Rad50_zn_hook PF04423.9 gi|148642691|ref|YP_001273204.1| - 0.36 10.3 3.1 1.2 8.6 0.1 2.8 2 1 1 3 3 3 0 Rad50 zinc hook motif DUF4163 PF13739.1 gi|148642691|ref|YP_001273204.1| - 1.9 9.3 6.3 1.3 9.8 0.4 2.5 1 1 1 3 3 3 0 Domain of unknown function (DUF4163) DUF1610 PF07754.6 gi|148642691|ref|YP_001273204.1| - 2.2 8.4 5.7 0.44 10.7 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) HD PF01966.17 gi|148642692|ref|YP_001273205.1| - 3.9e-19 68.8 0.7 3.9e-19 68.8 0.5 1.4 2 0 0 2 2 2 1 HD domain HDOD PF08668.7 gi|148642692|ref|YP_001273205.1| - 0.00026 20.3 0.0 0.1 11.8 0.0 2.2 1 1 1 2 2 2 2 HDOD domain HD_3 PF13023.1 gi|148642692|ref|YP_001273205.1| - 0.0031 17.2 0.0 0.0038 16.9 0.0 1.3 1 0 0 1 1 1 1 HD domain Acetate_kinase PF00871.12 gi|148642692|ref|YP_001273205.1| - 0.062 11.8 0.0 0.075 11.5 0.0 1.3 1 0 0 1 1 1 0 Acetokinase family TGT_C2 PF14810.1 gi|148642693|ref|YP_001273206.1| - 2e-15 56.3 0.0 4.1e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|148642693|ref|YP_001273206.1| - 3.9e-13 48.9 0.5 7.6e-13 48.0 0.4 1.4 1 0 0 1 1 1 1 PUA domain DUF59 PF01883.14 gi|148642694|ref|YP_001273207.1| - 8.6e-15 54.4 1.8 1e-14 54.2 1.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF59 ACT PF01842.20 gi|148642695|ref|YP_001273208.1| - 8.1e-05 22.0 0.1 0.00018 20.9 0.1 1.6 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|148642695|ref|YP_001273208.1| - 0.00061 20.0 1.2 0.0027 18.0 0.8 2.3 1 1 0 1 1 1 1 ACT domain HupF_HypC PF01455.13 gi|148642696|ref|YP_001273209.1| - 1.1e-25 89.4 0.0 1.6e-25 88.8 0.0 1.3 1 0 0 1 1 1 1 HupF/HypC family Hexapep PF00132.19 gi|148642696|ref|YP_001273209.1| - 0.033 13.6 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) KOW PF00467.24 gi|148642696|ref|YP_001273209.1| - 0.04 13.6 0.1 1.3 8.8 0.0 2.2 2 0 0 2 2 2 0 KOW motif DUF1654 PF07867.6 gi|148642696|ref|YP_001273209.1| - 0.17 11.2 1.2 0.31 10.4 0.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1654) Pyr_redox_2 PF07992.9 gi|148642697|ref|YP_001273210.1| - 6.4e-29 101.2 1.3 1.2e-28 100.4 0.9 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|148642697|ref|YP_001273210.1| - 1.5e-12 47.7 7.5 7e-11 42.3 0.5 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|148642697|ref|YP_001273210.1| - 2.6e-05 22.8 0.2 0.0002 19.9 0.1 2.5 3 0 0 3 3 3 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|148642697|ref|YP_001273210.1| - 0.00016 21.8 0.0 0.00031 20.8 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|148642697|ref|YP_001273210.1| - 0.00036 19.5 1.4 0.5 9.1 0.4 3.4 3 1 1 4 4 4 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|148642697|ref|YP_001273210.1| - 0.003 16.4 1.1 0.024 13.4 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|148642697|ref|YP_001273210.1| - 0.01 14.9 0.3 0.01 14.9 0.2 1.8 2 0 0 2 2 2 0 FAD binding domain K_oxygenase PF13434.1 gi|148642697|ref|YP_001273210.1| - 0.011 14.6 0.0 0.019 13.9 0.0 1.4 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.1 gi|148642697|ref|YP_001273210.1| - 0.062 13.3 2.6 0.13 12.3 0.1 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain XdhC_C PF13478.1 gi|148642697|ref|YP_001273210.1| - 0.15 12.3 0.0 0.32 11.3 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Glyco_trans_4_2 PF13477.1 gi|148642698|ref|YP_001273211.1| - 0.00063 19.5 0.0 0.0033 17.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_28 PF03033.15 gi|148642698|ref|YP_001273211.1| - 0.0013 18.5 0.3 0.0026 17.5 0.2 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Spore_YtrH PF14034.1 gi|148642698|ref|YP_001273211.1| - 0.014 15.2 0.6 0.032 14.1 0.4 1.5 1 0 0 1 1 1 0 Sporulation protein YtrH Glyco_trans_4_4 PF13579.1 gi|148642698|ref|YP_001273211.1| - 0.049 13.7 0.0 0.065 13.3 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain COMPASS-Shg1 PF05205.7 gi|148642698|ref|YP_001273211.1| - 0.17 12.1 2.9 1.3 9.3 0.2 2.9 3 1 1 4 4 4 0 COMPASS (Complex proteins associated with Set1p) component shg1 eRF1_1 PF03463.10 gi|148642700|ref|YP_001273213.1| - 3.9e-34 117.0 0.7 3.9e-34 117.0 0.5 1.6 2 0 0 2 2 2 1 eRF1 domain 1 eRF1_2 PF03464.10 gi|148642700|ref|YP_001273213.1| - 1.2e-24 87.1 0.4 2.5e-24 86.0 0.3 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|148642700|ref|YP_001273213.1| - 1.1e-19 70.6 2.1 4.4e-19 68.8 0.6 2.6 2 1 0 2 2 2 1 eRF1 domain 3 PDH PF02153.12 gi|148642701|ref|YP_001273214.1| - 1.9e-53 181.0 0.2 2.7e-53 180.4 0.1 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|148642701|ref|YP_001273214.1| - 3.9e-11 43.2 0.0 9.4e-11 42.0 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|148642701|ref|YP_001273214.1| - 6.7e-05 22.7 0.0 0.00019 21.2 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|148642701|ref|YP_001273214.1| - 0.00026 21.2 0.0 0.00095 19.4 0.0 2.0 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|148642701|ref|YP_001273214.1| - 0.0073 16.0 0.0 0.02 14.6 0.0 1.8 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.17 gi|148642701|ref|YP_001273214.1| - 0.023 15.2 0.0 0.061 13.8 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold FDX-ACB PF03147.9 gi|148642701|ref|YP_001273214.1| - 0.031 14.4 0.0 0.083 13.0 0.0 1.8 1 0 0 1 1 1 0 Ferredoxin-fold anticodon binding domain ApbA PF02558.11 gi|148642701|ref|YP_001273214.1| - 0.057 12.8 0.1 0.24 10.8 0.0 2.0 2 1 1 3 3 3 0 Ketopantoate reductase PanE/ApbA DapB_N PF01113.15 gi|148642701|ref|YP_001273214.1| - 0.061 13.2 0.1 0.22 11.4 0.0 2.0 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AAA PF00004.24 gi|148642702|ref|YP_001273215.1| - 1.5e-98 326.0 0.0 8.1e-49 165.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|148642702|ref|YP_001273215.1| - 2e-26 91.7 0.8 4e-25 87.5 0.1 3.0 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|148642702|ref|YP_001273215.1| - 3.1e-15 56.5 0.0 5.5e-07 29.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|148642702|ref|YP_001273215.1| - 2.7e-14 53.5 0.3 1e-06 28.8 0.0 3.3 3 1 0 3 3 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|148642702|ref|YP_001273215.1| - 2e-12 46.5 0.4 5.3e-12 45.1 0.3 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|148642702|ref|YP_001273215.1| - 2.1e-12 47.3 0.5 0.00047 20.3 0.0 4.2 2 2 0 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|148642702|ref|YP_001273215.1| - 3.8e-12 45.7 0.0 1.3e-05 24.4 0.0 3.0 2 2 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|148642702|ref|YP_001273215.1| - 1.8e-11 44.0 0.0 7.4e-05 22.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|148642702|ref|YP_001273215.1| - 4.3e-11 42.8 0.0 6.3e-06 26.1 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|148642702|ref|YP_001273215.1| - 2.8e-10 41.0 0.0 0.00017 22.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|148642702|ref|YP_001273215.1| - 1.1e-09 37.4 0.0 0.00013 20.7 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|148642702|ref|YP_001273215.1| - 8.6e-09 34.7 0.0 0.00053 19.1 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_5 PF07728.9 gi|148642702|ref|YP_001273215.1| - 2.1e-08 34.0 2.1 0.0022 17.7 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|148642702|ref|YP_001273215.1| - 7.2e-08 32.0 3.8 1 8.7 0.0 4.3 3 1 0 4 4 4 2 AAA domain AAA_19 PF13245.1 gi|148642702|ref|YP_001273215.1| - 1.1e-06 28.3 4.9 0.0054 16.4 0.1 2.9 3 0 0 3 3 2 2 Part of AAA domain AAA_3 PF07726.6 gi|148642702|ref|YP_001273215.1| - 1.5e-06 27.8 0.0 0.067 12.8 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|148642702|ref|YP_001273215.1| - 2.9e-06 27.3 0.0 0.0051 16.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|148642702|ref|YP_001273215.1| - 4.1e-06 26.3 0.3 0.027 13.9 0.0 3.4 2 2 0 2 2 2 2 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|148642702|ref|YP_001273215.1| - 5.2e-06 25.9 0.1 0.035 13.5 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|148642702|ref|YP_001273215.1| - 5.6e-06 26.6 0.0 0.12 12.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|148642702|ref|YP_001273215.1| - 7.6e-06 25.2 1.3 0.02 14.0 0.2 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|148642702|ref|YP_001273215.1| - 7.8e-06 26.0 0.0 0.15 12.2 0.0 2.7 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.7 gi|148642702|ref|YP_001273215.1| - 8.1e-06 25.5 0.9 0.63 9.6 0.0 4.1 4 0 0 4 4 4 1 NACHT domain KaiC PF06745.8 gi|148642702|ref|YP_001273215.1| - 1.6e-05 24.1 3.2 0.23 10.5 0.0 4.2 4 1 0 5 5 5 2 KaiC DUF2075 PF09848.4 gi|148642702|ref|YP_001273215.1| - 4.7e-05 22.5 0.0 0.25 10.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|148642702|ref|YP_001273215.1| - 7.8e-05 22.4 0.0 0.043 13.4 0.0 3.0 2 1 1 3 3 3 1 Bacterial dnaA protein ABC_tran PF00005.22 gi|148642702|ref|YP_001273215.1| - 0.00014 22.2 0.0 0.59 10.4 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.1 gi|148642702|ref|YP_001273215.1| - 0.00021 20.9 0.0 0.68 9.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.13 gi|148642702|ref|YP_001273215.1| - 0.00021 20.8 0.0 0.096 12.1 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|148642702|ref|YP_001273215.1| - 0.00023 20.4 1.8 0.14 11.3 0.0 2.8 3 0 0 3 3 2 2 PhoH-like protein DUF815 PF05673.8 gi|148642702|ref|YP_001273215.1| - 0.00027 19.9 0.0 0.28 10.0 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|148642702|ref|YP_001273215.1| - 0.00075 19.2 0.1 9.9 5.7 0.0 3.9 2 2 1 3 3 3 0 Archaeal ATPase AAA_11 PF13086.1 gi|148642702|ref|YP_001273215.1| - 0.0012 18.4 0.0 0.54 9.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|148642702|ref|YP_001273215.1| - 0.0015 17.4 0.1 1.1 7.9 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|148642702|ref|YP_001273215.1| - 0.0025 17.8 0.0 1.6 8.7 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_30 PF13604.1 gi|148642702|ref|YP_001273215.1| - 0.007 15.9 0.1 3.6 7.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.12 gi|148642702|ref|YP_001273215.1| - 0.01 14.7 0.0 2.3 6.9 0.0 2.2 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 ResIII PF04851.10 gi|148642702|ref|YP_001273215.1| - 0.012 15.4 0.0 4.5 7.0 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.10 gi|148642702|ref|YP_001273215.1| - 0.015 15.0 0.4 6.9 6.3 0.0 3.5 2 2 2 4 4 3 0 NTPase ATP-synt_ab PF00006.20 gi|148642702|ref|YP_001273215.1| - 0.018 14.5 0.0 2.4 7.5 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain SKI PF01202.17 gi|148642702|ref|YP_001273215.1| - 0.044 13.6 0.0 13 5.6 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Cytidylate_kin2 PF13189.1 gi|148642702|ref|YP_001273215.1| - 0.064 13.1 0.2 4.2 7.2 0.0 2.7 3 0 0 3 3 2 0 Cytidylate kinase-like family SRP1_TIP1 PF00660.12 gi|148642702|ref|YP_001273215.1| - 0.075 12.8 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Seripauperin and TIP1 family UPF0079 PF02367.12 gi|148642702|ref|YP_001273215.1| - 0.078 12.6 0.0 9.4 5.8 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 CPT PF07931.7 gi|148642702|ref|YP_001273215.1| - 0.11 12.1 0.0 11 5.5 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Zot PF05707.7 gi|148642702|ref|YP_001273215.1| - 0.21 11.0 1.2 35 3.7 0.1 3.6 3 1 0 3 3 3 0 Zonular occludens toxin (Zot) DEAD PF00270.24 gi|148642702|ref|YP_001273215.1| - 0.51 9.8 3.1 18 4.7 0.0 3.5 2 2 2 4 4 4 0 DEAD/DEAH box helicase DUF2099 PF09872.4 gi|148642703|ref|YP_001273216.1| - 1.1e-107 358.8 2.5 1.3e-107 358.6 1.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) ThiC PF01964.13 gi|148642704|ref|YP_001273217.1| - 5.2e-193 641.2 0.3 5.8e-193 641.1 0.2 1.0 1 0 0 1 1 1 1 ThiC family DNA_ligase_A_N PF04675.9 gi|148642705|ref|YP_001273218.1| - 4e-51 173.3 0.9 6.7e-50 169.3 0.4 2.3 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_M PF01068.16 gi|148642705|ref|YP_001273218.1| - 8.1e-47 159.2 0.0 1.3e-46 158.5 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.10 gi|148642705|ref|YP_001273218.1| - 8.6e-17 61.3 0.0 1.8e-16 60.3 0.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region Abhydro_lipase PF04083.11 gi|148642705|ref|YP_001273218.1| - 0.13 11.6 0.1 0.63 9.4 0.0 2.0 2 0 0 2 2 2 0 Partial alpha/beta-hydrolase lipase region DUF165 PF02592.10 gi|148642706|ref|YP_001273219.1| - 1.7e-37 128.7 9.0 1.7e-37 128.7 6.3 1.7 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 DUF2636 PF11120.3 gi|148642706|ref|YP_001273219.1| - 0.099 12.1 1.6 3.7 7.1 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2636) tRNA_anti_2 PF13742.1 gi|148642707|ref|YP_001273220.1| - 8.8e-06 25.5 0.0 1.1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|148642707|ref|YP_001273220.1| - 1.1e-05 25.1 0.0 2.2e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.2 gi|148642707|ref|YP_001273220.1| - 0.073 12.5 1.8 0.2 11.1 1.3 1.9 1 1 0 1 1 1 0 tRNA_anti-like PGM_PMM_I PF02878.11 gi|148642708|ref|YP_001273221.1| - 6e-41 139.1 0.0 1.9e-40 137.5 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|148642708|ref|YP_001273221.1| - 4.3e-30 104.1 0.1 8.3e-30 103.1 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|148642708|ref|YP_001273221.1| - 7.8e-27 93.5 0.0 1.4e-26 92.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|148642708|ref|YP_001273221.1| - 7.3e-13 48.3 0.0 2.1e-12 46.8 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF1359 PF07097.6 gi|148642708|ref|YP_001273221.1| - 0.12 12.4 1.6 1.4 9.0 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1359) DUF116 PF01976.12 gi|148642709|ref|YP_001273222.1| - 4e-26 91.3 4.2 6.2e-26 90.7 2.9 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF116 IFN-gamma PF00714.12 gi|148642709|ref|YP_001273222.1| - 0.087 12.6 0.3 0.087 12.6 0.2 1.8 2 0 0 2 2 2 0 Interferon gamma TetR_N PF00440.18 gi|148642710|ref|YP_001273223.1| - 1.5e-14 53.3 0.0 2.5e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Rep_Org_C PF06926.6 gi|148642710|ref|YP_001273223.1| - 0.015 15.4 1.1 0.027 14.5 0.7 1.5 1 0 0 1 1 1 0 Putative replisome organiser protein C-terminus HTH_40 PF14493.1 gi|148642710|ref|YP_001273223.1| - 0.037 14.2 0.3 0.12 12.5 0.2 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain YoqO PF14037.1 gi|148642710|ref|YP_001273223.1| - 0.044 13.8 2.2 0.082 13.0 0.2 2.1 2 0 0 2 2 2 0 YoqO-like protein TPR_1 PF00515.23 gi|148642711|ref|YP_001273224.1| - 1.4e-51 170.0 0.1 7.2e-08 31.7 0.0 7.4 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|148642711|ref|YP_001273224.1| - 3.9e-50 167.3 0.6 2.9e-14 52.4 0.0 5.1 2 1 3 5 5 5 5 TPR repeat TPR_2 PF07719.12 gi|148642711|ref|YP_001273224.1| - 3.1e-48 157.8 0.0 1.4e-06 27.7 0.0 7.3 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|148642711|ref|YP_001273224.1| - 2.2e-42 142.8 0.0 1.2e-08 35.3 0.0 5.0 2 2 4 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|148642711|ref|YP_001273224.1| - 2.2e-35 120.4 0.1 1.2e-09 38.0 0.0 5.0 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|148642711|ref|YP_001273224.1| - 4.2e-34 113.8 1.7 1.2e-05 25.0 0.3 7.6 8 0 0 8 8 7 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|148642711|ref|YP_001273224.1| - 8.8e-33 109.6 3.4 3.5e-05 23.2 0.0 7.6 5 2 2 7 7 7 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|148642711|ref|YP_001273224.1| - 2e-30 102.5 0.0 0.003 18.0 0.0 7.2 1 1 6 7 7 7 7 Tetratricopeptide repeat TPR_9 PF13371.1 gi|148642711|ref|YP_001273224.1| - 4.2e-26 90.5 0.0 5.6e-07 29.3 0.0 4.1 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|148642711|ref|YP_001273224.1| - 1.1e-25 89.7 0.0 2.9e-08 33.9 0.0 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|148642711|ref|YP_001273224.1| - 2.7e-18 64.2 0.1 0.035 13.8 0.0 6.8 7 0 0 7 7 7 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|148642711|ref|YP_001273224.1| - 4.8e-16 58.6 0.0 2.1e-07 30.9 0.0 3.3 3 0 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|148642711|ref|YP_001273224.1| - 1.4e-12 47.1 0.0 0.14 12.7 0.0 6.9 7 0 0 7 7 7 2 Tetratricopeptide repeat ASCH PF04266.9 gi|148642711|ref|YP_001273224.1| - 6.9e-09 36.0 0.3 1.2e-08 35.3 0.2 1.3 1 0 0 1 1 1 1 ASCH domain Fis1_TPR_C PF14853.1 gi|148642711|ref|YP_001273224.1| - 8e-09 35.2 0.0 2.4 8.1 0.0 6.2 5 1 2 7 7 6 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|148642711|ref|YP_001273224.1| - 5.9e-08 32.3 0.0 1.5 8.8 0.0 5.9 7 0 0 7 7 6 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|148642711|ref|YP_001273224.1| - 9.2e-08 31.2 0.1 0.021 13.6 0.0 4.0 1 1 3 4 4 4 2 NMDA receptor-regulated protein 1 TPR_4 PF07721.9 gi|148642711|ref|YP_001273224.1| - 3.8e-06 26.8 0.0 23 5.8 0.0 5.7 6 0 0 6 6 5 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|148642711|ref|YP_001273224.1| - 1.4e-05 24.5 0.1 0.048 13.0 0.0 4.3 3 1 0 3 3 3 1 26S proteasome subunit RPN7 DUF3856 PF12968.2 gi|148642711|ref|YP_001273224.1| - 3.2e-05 23.7 1.9 0.29 10.9 0.1 5.5 3 2 2 5 5 5 1 Domain of Unknown Function (DUF3856) PPR PF01535.15 gi|148642711|ref|YP_001273224.1| - 3.4e-05 23.5 10.7 0.69 10.0 0.0 6.5 7 0 0 7 7 6 1 PPR repeat MIT PF04212.13 gi|148642711|ref|YP_001273224.1| - 7e-05 22.6 0.0 9 6.2 0.0 5.1 5 2 0 5 5 4 0 MIT (microtubule interacting and transport) domain TPR_15 PF13429.1 gi|148642711|ref|YP_001273224.1| - 9.6e-05 21.5 0.0 0.12 11.4 0.0 4.1 1 1 0 2 2 2 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|148642711|ref|YP_001273224.1| - 0.00042 20.2 0.0 0.11 12.4 0.0 3.7 2 2 2 4 4 4 1 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|148642711|ref|YP_001273224.1| - 0.003 16.7 0.3 0.098 11.8 0.0 2.5 1 1 1 2 2 2 1 Coatomer epsilon subunit TPR_3 PF07720.7 gi|148642711|ref|YP_001273224.1| - 0.0032 17.2 0.2 6.8 6.5 0.0 5.1 5 0 0 5 5 5 0 Tetratricopeptide repeat BTAD PF03704.12 gi|148642711|ref|YP_001273224.1| - 0.022 15.0 0.0 0.65 10.2 0.0 3.1 2 1 1 3 3 3 0 Bacterial transcriptional activator domain PPR_2 PF13041.1 gi|148642711|ref|YP_001273224.1| - 0.045 13.7 4.2 40 4.3 0.0 5.2 6 0 0 6 6 5 0 PPR repeat family DUF3808 PF10300.4 gi|148642711|ref|YP_001273224.1| - 0.065 11.7 0.0 2.3 6.7 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3808) Rapsyn_N PF10579.4 gi|148642711|ref|YP_001273224.1| - 0.087 12.6 0.0 6.2 6.6 0.0 3.3 2 1 1 3 3 3 0 Rapsyn N-terminal myristoylation and linker region Alkyl_sulf_dimr PF14863.1 gi|148642711|ref|YP_001273224.1| - 0.11 12.7 0.0 26 5.0 0.0 3.2 4 1 1 5 5 2 0 Alkyl sulfatase dimerisation Radical_SAM PF04055.16 gi|148642712|ref|YP_001273225.1| - 9.7e-23 81.1 0.0 1.4e-22 80.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|148642712|ref|YP_001273225.1| - 3.3e-16 59.6 0.0 5.9e-16 58.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|148642712|ref|YP_001273225.1| - 4.5e-12 46.0 0.0 1.1e-11 44.8 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Aminotran_1_2 PF00155.16 gi|148642713|ref|YP_001273226.1| - 8e-56 189.5 0.0 9.1e-56 189.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|148642713|ref|YP_001273226.1| - 6.3e-11 41.6 0.0 2.9e-07 29.5 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|148642713|ref|YP_001273226.1| - 5.8e-09 34.7 0.0 8.3e-09 34.2 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|148642713|ref|YP_001273226.1| - 4e-07 29.3 0.0 5.6e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|148642713|ref|YP_001273226.1| - 8.9e-05 21.2 0.1 0.00062 18.5 0.0 2.0 1 1 1 2 2 2 1 Allinase Aminotran_MocR PF12897.2 gi|148642713|ref|YP_001273226.1| - 0.0038 15.8 0.0 0.0068 15.0 0.0 1.4 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Met_gamma_lyase PF06838.6 gi|148642713|ref|YP_001273226.1| - 0.063 11.5 0.0 0.1 10.9 0.0 1.2 1 0 0 1 1 1 0 Methionine gamma-lyase SUI1 PF01253.17 gi|148642713|ref|YP_001273226.1| - 0.094 12.5 0.1 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 Translation initiation factor SUI1 Hexapep PF00132.19 gi|148642714|ref|YP_001273227.1| - 2.9e-22 77.1 22.8 7.8e-10 37.8 1.9 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|148642714|ref|YP_001273227.1| - 3.9e-11 42.3 25.4 7.1e-07 28.6 2.3 3.8 1 1 4 5 5 5 4 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|148642714|ref|YP_001273227.1| - 0.15 10.5 1.4 0.2 10.1 0.5 1.5 1 1 1 2 2 2 0 L-fucokinase Bactofilin PF04519.8 gi|148642714|ref|YP_001273227.1| - 0.16 11.9 2.6 0.61 10.1 0.8 2.4 1 1 1 2 2 2 0 Polymer-forming cytoskeletal NTP_transferase PF00483.18 gi|148642715|ref|YP_001273228.1| - 4.1e-50 170.3 0.0 6.1e-50 169.8 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|148642715|ref|YP_001273228.1| - 1.2e-20 71.9 26.2 4.9e-08 32.1 0.8 5.2 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|148642715|ref|YP_001273228.1| - 7.2e-13 48.9 0.0 9.5e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|148642715|ref|YP_001273228.1| - 2.5e-10 39.7 18.3 3.3e-05 23.3 0.6 4.8 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|148642715|ref|YP_001273228.1| - 0.002 17.6 0.0 0.0035 16.8 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Bactofilin PF04519.8 gi|148642715|ref|YP_001273228.1| - 0.067 13.2 2.8 0.2 11.6 1.4 2.2 1 1 1 2 2 2 0 Polymer-forming cytoskeletal PGM_PMM_I PF02878.11 gi|148642716|ref|YP_001273229.1| - 6.5e-45 152.0 0.0 1e-44 151.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|148642716|ref|YP_001273229.1| - 3.4e-27 94.7 0.0 7.4e-27 93.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|148642716|ref|YP_001273229.1| - 1.9e-15 56.9 0.0 3.7e-15 55.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|148642716|ref|YP_001273229.1| - 4.2e-11 42.6 0.0 9.6e-11 41.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF1654 PF07867.6 gi|148642716|ref|YP_001273229.1| - 0.028 13.7 0.3 0.32 10.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1654) PhosphMutase PF10143.4 gi|148642717|ref|YP_001273230.1| - 2.8e-63 212.6 0.0 4e-63 212.1 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|148642717|ref|YP_001273230.1| - 1.5e-57 194.8 1.1 1.7e-57 194.6 0.8 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|148642717|ref|YP_001273230.1| - 3.2e-06 26.7 0.2 0.0025 17.1 0.1 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.15 gi|148642717|ref|YP_001273230.1| - 0.033 12.8 0.2 0.098 11.3 0.0 1.8 2 0 0 2 2 2 0 Alkaline phosphatase Sulfatase PF00884.18 gi|148642717|ref|YP_001273230.1| - 0.15 11.1 0.2 15 4.6 0.1 2.2 2 0 0 2 2 2 0 Sulfatase 5TM-5TMR_LYT PF07694.7 gi|148642718|ref|YP_001273231.1| - 0.019 14.2 0.1 0.022 14.0 0.1 1.0 1 0 0 1 1 1 0 5TMR of 5TMR-LYT OST3_OST6 PF04756.8 gi|148642718|ref|YP_001273231.1| - 0.035 13.6 0.7 0.04 13.4 0.5 1.1 1 0 0 1 1 1 0 OST3 / OST6 family 7TM-7TMR_HD PF07698.6 gi|148642718|ref|YP_001273231.1| - 0.063 12.7 0.9 0.067 12.6 0.7 1.1 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase DUF92 PF01940.11 gi|148642719|ref|YP_001273232.1| - 2.1e-63 213.4 17.3 2.5e-63 213.2 12.0 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 LMF1 PF06762.9 gi|148642719|ref|YP_001273232.1| - 3.2 6.4 5.3 3.6 6.2 3.7 1.4 1 1 0 1 1 1 0 Lipase maturation factor Bacteriocin_IIc PF10439.4 gi|148642719|ref|YP_001273232.1| - 3.4 7.8 14.7 0.6 10.2 0.4 3.3 3 1 0 3 3 3 0 Bacteriocin class II with double-glycine leader peptide Wzy_C PF04932.10 gi|148642719|ref|YP_001273232.1| - 6.2 6.5 18.7 1.5 8.6 5.4 2.3 2 0 0 2 2 2 0 O-Antigen ligase DUF4260 PF14079.1 gi|148642719|ref|YP_001273232.1| - 8.6 6.2 9.4 9.7 6.0 3.6 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4260) LemA PF04011.7 gi|148642720|ref|YP_001273233.1| - 3.7e-60 202.2 5.1 4.5e-60 201.9 3.5 1.1 1 0 0 1 1 1 1 LemA family BBP1_N PF15271.1 gi|148642720|ref|YP_001273233.1| - 0.029 14.7 0.3 0.042 14.2 0.2 1.3 1 0 0 1 1 1 0 Spindle pole body component BBP1, Mps2-binding protein Ribosomal_S3Ae PF01015.13 gi|148642721|ref|YP_001273234.1| - 1.6e-68 229.9 6.7 1.9e-68 229.6 4.7 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DUF3139 PF11337.3 gi|148642722|ref|YP_001273235.1| - 0.01 16.0 2.0 0.43 10.8 1.4 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3139) tRNA_anti-like PF12869.2 gi|148642722|ref|YP_001273235.1| - 0.01 15.2 0.1 0.013 15.0 0.0 1.2 1 0 0 1 1 1 0 tRNA_anti-like SSB PF00436.20 gi|148642722|ref|YP_001273235.1| - 0.051 13.4 0.1 0.071 12.9 0.0 1.2 1 0 0 1 1 1 0 Single-strand binding protein family Nitro_FeMo-Co PF02579.12 gi|148642723|ref|YP_001273236.1| - 3.8e-16 58.9 0.1 4.3e-16 58.7 0.1 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor FMN_red PF03358.10 gi|148642724|ref|YP_001273237.1| - 9.7e-25 86.8 0.0 1.1e-24 86.6 0.0 1.0 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|148642724|ref|YP_001273237.1| - 0.00035 20.1 0.0 0.00054 19.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold PNP_UDP_1 PF01048.15 gi|148642725|ref|YP_001273238.1| - 5.4e-43 146.6 0.1 6.2e-43 146.4 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily RtcB PF01139.12 gi|148642726|ref|YP_001273239.1| - 2e-157 524.5 0.2 2.2e-157 524.3 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB TfoX_N PF04993.8 gi|148642726|ref|YP_001273239.1| - 0.054 13.3 0.2 0.1 12.4 0.1 1.5 1 0 0 1 1 1 0 TfoX N-terminal domain DUF4064 PF13273.1 gi|148642727|ref|YP_001273240.1| - 2.5e-06 27.5 14.3 2.5e-06 27.5 9.9 2.7 2 1 0 2 2 2 1 Protein of unknown function (DUF4064) DUF4112 PF13430.1 gi|148642727|ref|YP_001273240.1| - 0.54 10.1 2.9 0.44 10.4 0.6 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4112) Peroxin-13_N PF04088.8 gi|148642727|ref|YP_001273240.1| - 0.59 10.0 5.4 0.11 12.3 1.2 1.6 2 0 0 2 2 2 0 Peroxin 13, N-terminal region DUF2583 PF10762.4 gi|148642727|ref|YP_001273240.1| - 0.86 9.7 7.1 0.096 12.8 1.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) DUF4199 PF13858.1 gi|148642727|ref|YP_001273240.1| - 0.89 9.4 13.7 1.1 9.1 9.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) Archease PF01951.11 gi|148642728|ref|YP_001273241.1| - 5.5e-38 130.0 0.6 6.1e-38 129.8 0.4 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DUF2929 PF11151.3 gi|148642729|ref|YP_001273242.1| - 0.032 14.3 1.3 0.039 14.0 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2929) TRIQK PF15168.1 gi|148642729|ref|YP_001273242.1| - 0.039 13.8 0.2 0.05 13.5 0.1 1.2 1 0 0 1 1 1 0 Triple QxxK/R motif-containing protein family Zn_ribbon_2 PF12674.2 gi|148642730|ref|YP_001273243.1| - 1.6e-33 114.8 4.6 2.3e-33 114.3 3.2 1.2 1 0 0 1 1 1 1 Putative zinc ribbon domain DZR PF12773.2 gi|148642730|ref|YP_001273243.1| - 0.064 13.0 1.9 0.14 12.0 1.3 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|148642730|ref|YP_001273243.1| - 0.21 10.8 1.6 1.1 8.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2616 PF11077.3 gi|148642730|ref|YP_001273243.1| - 2.2 7.7 6.0 3.1 7.2 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2616) AAA_16 PF13191.1 gi|148642731|ref|YP_001273244.1| - 1.2e-11 44.9 0.0 8.4e-11 42.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|148642731|ref|YP_001273244.1| - 4.3e-08 33.1 0.2 3.4e-07 30.1 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase AAA_22 PF13401.1 gi|148642731|ref|YP_001273244.1| - 1.2e-05 25.4 0.0 3e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|148642731|ref|YP_001273244.1| - 0.00045 19.8 0.0 0.0027 17.3 0.0 2.4 3 0 0 3 3 3 1 CDC6, C terminal AAA_35 PF14516.1 gi|148642731|ref|YP_001273244.1| - 0.00084 18.0 0.4 0.004 15.8 0.1 2.2 2 1 0 2 2 2 1 AAA-like domain Sp100 PF03172.8 gi|148642731|ref|YP_001273244.1| - 0.0023 17.8 1.2 1.3 9.0 0.1 2.8 2 0 0 2 2 2 2 Sp100 domain FUR PF01475.14 gi|148642731|ref|YP_001273244.1| - 0.0034 17.2 0.1 0.011 15.6 0.0 1.8 2 0 0 2 2 2 1 Ferric uptake regulator family Dehydratase_SU PF02287.10 gi|148642731|ref|YP_001273244.1| - 0.021 14.5 0.1 0.092 12.4 0.0 2.0 2 0 0 2 2 2 0 Dehydratase small subunit Borrelia_lipo_2 PF06238.6 gi|148642731|ref|YP_001273244.1| - 0.027 14.5 0.1 0.078 13.0 0.1 1.8 1 0 0 1 1 1 0 Borrelia burgdorferi BBR25 lipoprotein AAA_14 PF13173.1 gi|148642731|ref|YP_001273244.1| - 0.048 13.5 1.1 0.43 10.4 0.1 2.6 2 1 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|148642731|ref|YP_001273244.1| - 0.12 11.2 0.0 0.27 10.0 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|148642731|ref|YP_001273244.1| - 0.13 11.8 0.2 0.37 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|148642731|ref|YP_001273244.1| - 0.22 11.2 2.0 1.1 8.9 0.2 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|148642731|ref|YP_001273244.1| - 0.22 10.9 1.7 0.47 9.8 0.0 2.2 3 1 0 3 3 3 0 IstB-like ATP binding protein MAF_flag10 PF01973.13 gi|148642732|ref|YP_001273245.1| - 1.2e-36 125.7 0.3 1.6e-36 125.3 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 CST-I PF06002.7 gi|148642732|ref|YP_001273245.1| - 0.032 13.5 0.1 0.26 10.5 0.0 2.1 2 0 0 2 2 2 0 Alpha-2,3-sialyltransferase (CST-I) TPK_catalytic PF04263.11 gi|148642732|ref|YP_001273245.1| - 0.063 12.8 0.2 0.69 9.5 0.0 2.2 2 0 0 2 2 2 0 Thiamin pyrophosphokinase, catalytic domain RVT_3 PF13456.1 gi|148642733|ref|YP_001273246.1| - 0.082 12.6 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Reverse transcriptase-like Sarcolipin PF05366.6 gi|148642733|ref|YP_001273246.1| - 3.9 6.9 7.9 1.5 8.2 1.2 2.5 2 0 0 2 2 2 0 Sarcolipin DUF161 PF02588.10 gi|148642736|ref|YP_001273249.1| - 3.9e-07 30.2 36.2 0.0071 16.6 11.9 2.3 1 1 1 2 2 2 2 Uncharacterized BCR, YitT family COG1284 Aminotran_5 PF00266.14 gi|148642737|ref|YP_001273250.1| - 1.1e-41 142.8 1.4 1.2e-41 142.7 1.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|148642737|ref|YP_001273250.1| - 0.0035 15.7 2.0 0.0045 15.3 0.6 1.6 1 1 1 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme zinc_ribbon_2 PF13240.1 gi|148642738|ref|YP_001273251.1| - 5e-08 32.1 3.7 8.8e-08 31.3 2.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148642738|ref|YP_001273251.1| - 5.8e-07 28.5 3.2 9.4e-07 27.8 2.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148642738|ref|YP_001273251.1| - 0.00016 21.4 4.0 0.00027 20.7 2.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|148642738|ref|YP_001273251.1| - 0.021 14.4 1.4 0.037 13.6 1.0 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|148642738|ref|YP_001273251.1| - 0.043 13.5 4.0 0.12 12.0 2.8 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 BOF PF04076.8 gi|148642738|ref|YP_001273251.1| - 0.055 13.2 0.1 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial OB fold (BOF) protein Tiny_TM_bacill PF09680.5 gi|148642738|ref|YP_001273251.1| - 0.085 12.2 7.3 0.15 11.4 5.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (Tiny_TM_bacill) DUF2116 PF09889.4 gi|148642738|ref|YP_001273251.1| - 0.1 12.3 15.6 0.41 10.4 1.2 2.9 2 1 1 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) OppC_N PF12911.2 gi|148642738|ref|YP_001273251.1| - 0.11 11.8 0.2 0.19 11.0 0.2 1.3 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Nudix_N_2 PF14803.1 gi|148642738|ref|YP_001273251.1| - 0.21 11.2 2.1 12 5.7 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal GCC2_GCC3 PF07699.8 gi|148642738|ref|YP_001273251.1| - 0.24 11.0 6.9 6.9 6.3 4.8 2.3 1 1 0 1 1 1 0 GCC2 and GCC3 Herpes_UL49_1 PF03117.9 gi|148642738|ref|YP_001273251.1| - 0.4 9.7 2.7 0.57 9.2 1.9 1.2 1 0 0 1 1 1 0 UL49 family PhnA_Zn_Ribbon PF08274.7 gi|148642738|ref|YP_001273251.1| - 0.41 10.4 3.9 1.9 8.3 2.7 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF3671 PF12420.3 gi|148642738|ref|YP_001273251.1| - 0.81 9.6 5.9 0.18 11.7 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function NOB1_Zn_bind PF08772.6 gi|148642738|ref|YP_001273251.1| - 2.6 7.9 8.4 27 4.6 1.0 2.3 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-DHHC PF01529.15 gi|148642738|ref|YP_001273251.1| - 4.8 6.5 8.1 1 8.7 1.7 2.0 1 1 1 2 2 2 0 DHHC palmitoyltransferase DUF4064 PF13273.1 gi|148642739|ref|YP_001273252.1| - 5.7e-15 55.2 19.0 5.7e-15 55.2 13.2 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF4064) zinc_ribbon_2 PF13240.1 gi|148642739|ref|YP_001273252.1| - 1.3e-07 30.8 4.1 2e-07 30.2 2.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148642739|ref|YP_001273252.1| - 4.1e-06 25.8 3.7 5.7e-06 25.3 2.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148642739|ref|YP_001273252.1| - 0.00011 21.9 1.0 0.00014 21.5 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon Vma12 PF11712.3 gi|148642739|ref|YP_001273252.1| - 0.016 14.8 0.1 0.016 14.8 0.0 1.4 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF973 PF06157.6 gi|148642739|ref|YP_001273252.1| - 0.053 12.4 15.2 0.073 12.0 10.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF973) zf-tcix PF14952.1 gi|148642739|ref|YP_001273252.1| - 0.078 12.3 1.0 0.12 11.6 0.7 1.4 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding UPF0547 PF10571.4 gi|148642739|ref|YP_001273252.1| - 0.088 12.5 1.5 4.5 7.0 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2387 PF09526.5 gi|148642739|ref|YP_001273252.1| - 0.26 11.2 1.9 1 9.3 1.4 1.8 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) EspB PF05802.6 gi|148642739|ref|YP_001273252.1| - 0.36 9.7 4.4 0.69 8.8 0.4 2.0 1 1 1 2 2 2 0 Enterobacterial EspB protein PMP22_Claudin PF00822.15 gi|148642739|ref|YP_001273252.1| - 3.4 7.2 9.9 56 3.3 0.1 2.3 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin family Claudin_2 PF13903.1 gi|148642739|ref|YP_001273252.1| - 3.6 7.2 12.9 40 3.8 8.9 2.2 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction RNA_POL_M_15KD PF02150.11 gi|148642739|ref|YP_001273252.1| - 3.6 7.3 5.6 19 5.0 3.9 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF1212 PF06738.7 gi|148642739|ref|YP_001273252.1| - 4.2 6.7 9.0 5.9 6.3 6.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) DUF4231 PF14015.1 gi|148642739|ref|YP_001273252.1| - 4.8 7.1 6.9 32 4.5 4.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) AAA_14 PF13173.1 gi|148642740|ref|YP_001273253.1| - 5.2e-34 116.9 2.0 7.9e-34 116.3 0.5 2.0 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.1 gi|148642740|ref|YP_001273253.1| - 7.8e-12 45.2 0.4 2.2e-11 43.7 0.3 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|148642740|ref|YP_001273253.1| - 1.9e-09 37.6 6.6 6.6e-08 32.5 1.5 3.3 1 1 1 2 2 2 2 Archaeal ATPase NACHT PF05729.7 gi|148642740|ref|YP_001273253.1| - 0.074 12.7 0.0 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.1 gi|148642740|ref|YP_001273253.1| - 0.1 12.5 0.0 0.52 10.2 0.0 2.0 2 1 1 3 3 3 0 AAA ATPase domain Yae1_N PF09811.4 gi|148642741|ref|YP_001273254.1| - 0.0009 18.7 5.3 0.0046 16.4 3.7 2.0 1 1 0 1 1 1 1 Essential protein Yae1, N terminal DUF4160 PF13711.1 gi|148642741|ref|YP_001273254.1| - 0.13 12.1 2.8 0.44 10.4 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4160) Yae1_N PF09811.4 gi|148642742|ref|YP_001273255.1| - 0.00084 18.8 1.4 0.0014 18.0 1.0 1.3 1 0 0 1 1 1 1 Essential protein Yae1, N terminal Toxin_56 PF15534.1 gi|148642742|ref|YP_001273255.1| - 0.11 13.0 1.1 0.12 12.8 0.7 1.2 1 0 0 1 1 1 0 Putative toxin 56 Spore_YtfJ PF09579.5 gi|148642743|ref|YP_001273256.1| - 9.6e-14 51.0 2.4 1.4e-13 50.4 1.7 1.2 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) DUF2953 PF11167.3 gi|148642744|ref|YP_001273257.1| - 2.7e-09 36.7 0.3 2.7e-09 36.7 0.2 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2953) DUF4635 PF15466.1 gi|148642744|ref|YP_001273257.1| - 0.00052 19.3 0.1 0.00083 18.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4635) FtsH_ext PF06480.10 gi|148642744|ref|YP_001273257.1| - 0.037 14.1 1.3 0.11 12.7 0.9 1.8 1 1 0 1 1 1 0 FtsH Extracellular Folate_carrier PF01770.13 gi|148642744|ref|YP_001273257.1| - 0.07 11.6 0.1 0.085 11.3 0.1 1.1 1 0 0 1 1 1 0 Reduced folate carrier Holin_LLH PF09682.5 gi|148642744|ref|YP_001273257.1| - 0.094 12.8 3.2 3.8 7.6 0.6 2.3 2 0 0 2 2 2 0 Phage holin protein (Holin_LLH) DUF4208 PF13907.1 gi|148642744|ref|YP_001273257.1| - 0.12 12.5 1.2 0.21 11.8 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) DUF1312 PF07009.6 gi|148642744|ref|YP_001273257.1| - 0.28 11.0 2.8 0.25 11.1 1.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1312) TPP_enzyme_N PF02776.13 gi|148642746|ref|YP_001273259.1| - 1.8e-49 167.5 0.0 2.7e-49 166.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|148642746|ref|YP_001273259.1| - 4.6e-36 123.7 0.1 1.6e-35 121.9 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|148642746|ref|YP_001273259.1| - 2.1e-27 95.5 0.0 4.7e-27 94.4 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Rad50_zn_hook PF04423.9 gi|148642746|ref|YP_001273259.1| - 0.012 15.0 0.6 0.031 13.7 0.1 1.9 2 0 0 2 2 2 0 Rad50 zinc hook motif dUTPase PF00692.14 gi|148642747|ref|YP_001273260.1| - 1.9e-13 50.0 0.0 2.6e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 dUTPase Tautomerase PF01361.16 gi|148642748|ref|YP_001273261.1| - 1.4e-11 43.8 0.1 1.5e-11 43.7 0.1 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|148642748|ref|YP_001273261.1| - 0.036 14.0 0.0 0.038 14.0 0.0 1.0 1 0 0 1 1 1 0 Tautomerase enzyme Spore_III_AF PF09581.5 gi|148642748|ref|YP_001273261.1| - 0.045 13.6 0.1 0.049 13.4 0.0 1.1 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) Tautomerase_3 PF14832.1 gi|148642748|ref|YP_001273261.1| - 0.053 13.5 0.0 0.055 13.4 0.0 1.0 1 0 0 1 1 1 0 Putative oxalocrotonate tautomerase enzyme DUF3427 PF11907.3 gi|148642750|ref|YP_001273263.1| - 7.9e-78 261.1 10.8 1.9e-77 259.9 7.5 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3427) ResIII PF04851.10 gi|148642750|ref|YP_001273263.1| - 1.6e-28 99.8 0.7 7.4e-28 97.6 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PLDc_2 PF13091.1 gi|148642750|ref|YP_001273263.1| - 5e-18 65.0 0.3 2.3e-17 62.9 0.1 2.2 2 0 0 2 2 2 1 PLD-like domain Helicase_C PF00271.26 gi|148642750|ref|YP_001273263.1| - 3.1e-11 42.9 0.1 1.3e-09 37.7 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|148642750|ref|YP_001273263.1| - 3.5e-09 36.3 0.0 1.2e-08 34.5 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase NUDIX PF00293.23 gi|148642751|ref|YP_001273264.1| - 1.2e-19 70.2 0.0 1.4e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|148642751|ref|YP_001273264.1| - 6.7e-11 41.6 0.0 7.6e-11 41.4 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.1 gi|148642751|ref|YP_001273264.1| - 0.044 13.1 0.1 0.047 13.0 0.0 1.3 1 1 0 1 1 1 0 Nucleotide hydrolase AAA_23 PF13476.1 gi|148642753|ref|YP_001273266.1| - 4e-10 40.3 79.6 0.00085 19.6 48.8 4.5 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|148642753|ref|YP_001273266.1| - 1.8e-08 33.8 28.1 5.2e-08 32.3 0.0 2.7 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.1 gi|148642753|ref|YP_001273266.1| - 2.7e-06 25.4 10.4 9.8e-06 23.5 2.3 3.2 3 1 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|148642753|ref|YP_001273266.1| - 0.00013 21.4 0.0 0.00056 19.3 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain GAS PF13851.1 gi|148642753|ref|YP_001273266.1| - 0.00048 19.3 11.4 0.00048 19.3 7.9 4.2 3 1 1 4 4 4 1 Growth-arrest specific micro-tubule binding Tropomyosin_1 PF12718.2 gi|148642753|ref|YP_001273266.1| - 0.013 15.3 9.1 0.013 15.3 6.3 3.7 3 1 1 4 4 3 0 Tropomyosin like LXG PF04740.7 gi|148642753|ref|YP_001273266.1| - 0.039 13.7 27.6 0.14 11.9 6.7 2.9 2 1 0 2 2 2 0 LXG domain of WXG superfamily Reo_sigmaC PF04582.7 gi|148642753|ref|YP_001273266.1| - 0.16 11.1 5.1 0.046 12.9 0.5 2.1 2 1 0 2 2 2 0 Reovirus sigma C capsid protein AAA_16 PF13191.1 gi|148642753|ref|YP_001273266.1| - 0.19 11.6 0.7 5.3 6.9 0.0 3.1 3 1 0 3 3 3 0 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|148642753|ref|YP_001273266.1| - 0.24 10.8 1.1 11 5.4 0.2 2.7 3 0 0 3 3 3 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|148642753|ref|YP_001273266.1| - 0.56 10.5 0.0 0.56 10.5 0.0 4.0 3 1 0 3 3 3 0 ABC transporter AAA_21 PF13304.1 gi|148642753|ref|YP_001273266.1| - 1.4 8.8 46.4 5.7 6.8 13.0 3.2 1 1 0 2 2 2 0 AAA domain V_ATPase_I PF01496.14 gi|148642753|ref|YP_001273266.1| - 1.7 6.4 25.6 0.17 9.6 7.8 2.4 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family TBPIP PF07106.8 gi|148642753|ref|YP_001273266.1| - 5.7 6.4 52.8 0.1 12.1 7.4 4.2 3 2 1 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3450 PF11932.3 gi|148642753|ref|YP_001273266.1| - 8.6 5.5 22.6 0.38 9.9 3.1 3.3 2 1 0 3 3 3 0 Protein of unknown function (DUF3450) ResIII PF04851.10 gi|148642755|ref|YP_001273268.1| - 5e-26 91.6 0.1 1.5e-25 90.0 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|148642755|ref|YP_001273268.1| - 9.9e-14 50.8 0.0 5.8e-12 45.0 0.0 2.3 2 0 0 2 2 2 1 SNF2 family N-terminal domain DEAD PF00270.24 gi|148642755|ref|YP_001273268.1| - 2e-12 46.9 0.0 4.1e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|148642755|ref|YP_001273268.1| - 1.4e-11 44.0 0.0 4.8e-11 42.3 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain PLDc_2 PF13091.1 gi|148642755|ref|YP_001273268.1| - 0.00014 21.5 2.6 0.00017 21.3 0.6 2.1 2 0 0 2 2 2 1 PLD-like domain DEAD_2 PF06733.10 gi|148642755|ref|YP_001273268.1| - 0.038 13.3 0.0 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 DEAD_2 T2SE PF00437.15 gi|148642755|ref|YP_001273268.1| - 0.098 11.5 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein B12-binding PF02310.14 gi|148642756|ref|YP_001273269.1| - 3.8e-14 52.6 0.0 8.6e-14 51.4 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.16 gi|148642756|ref|YP_001273269.1| - 0.00022 21.4 0.0 0.00068 19.8 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Ribosomal_S17e PF00833.13 gi|148642756|ref|YP_001273269.1| - 0.0041 16.8 0.1 0.092 12.5 0.0 2.5 2 0 0 2 2 2 1 Ribosomal S17 DUF4258 PF14076.1 gi|148642758|ref|YP_001273271.1| - 1.2e-10 41.2 0.0 1.7e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) HSP70 PF00012.15 gi|148642758|ref|YP_001273271.1| - 0.026 12.4 0.0 0.03 12.2 0.0 1.1 1 0 0 1 1 1 0 Hsp70 protein SNF PF00209.13 gi|148642759|ref|YP_001273272.1| - 5.1e-83 279.3 50.8 1.3e-52 179.0 20.0 2.0 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family PGA_cap PF09587.5 gi|148642760|ref|YP_001273273.1| - 6.5e-71 238.6 1.2 7.7e-71 238.3 0.8 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap SRP54 PF00448.17 gi|148642761|ref|YP_001273274.1| - 3.7e-75 251.7 2.1 5.5e-75 251.1 1.4 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|148642761|ref|YP_001273274.1| - 6.1e-11 42.2 3.3 2.5e-10 40.3 0.1 2.8 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain MobB PF03205.9 gi|148642761|ref|YP_001273274.1| - 2.9e-08 33.4 2.8 3.3e-06 26.8 0.2 2.9 1 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|148642761|ref|YP_001273274.1| - 7.5e-07 28.9 1.5 1.4e-06 28.0 1.0 1.4 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|148642761|ref|YP_001273274.1| - 5e-05 22.8 0.4 0.00011 21.6 0.3 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|148642761|ref|YP_001273274.1| - 9.8e-05 22.2 0.8 0.0016 18.3 0.2 2.5 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|148642761|ref|YP_001273274.1| - 0.0019 18.3 0.1 0.0064 16.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|148642761|ref|YP_001273274.1| - 0.0033 16.2 1.0 0.02 13.6 0.7 2.1 1 1 0 1 1 1 1 ArgK protein Zeta_toxin PF06414.7 gi|148642761|ref|YP_001273274.1| - 0.0043 16.1 0.2 0.01 14.9 0.2 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|148642761|ref|YP_001273274.1| - 0.0048 16.7 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|148642761|ref|YP_001273274.1| - 0.01 15.5 0.1 0.025 14.3 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|148642761|ref|YP_001273274.1| - 0.015 14.7 0.0 0.033 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain AAA PF00004.24 gi|148642761|ref|YP_001273274.1| - 0.022 14.9 0.4 0.071 13.3 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|148642761|ref|YP_001273274.1| - 0.025 14.5 0.0 0.083 12.8 0.0 2.0 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|148642761|ref|YP_001273274.1| - 0.026 13.9 6.9 0.052 12.9 2.4 2.8 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|148642761|ref|YP_001273274.1| - 0.031 14.2 0.0 0.076 12.9 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain Helicase_RecD PF05127.9 gi|148642761|ref|YP_001273274.1| - 0.04 13.5 0.1 0.04 13.5 0.1 2.0 2 0 0 2 2 2 0 Helicase AAA_17 PF13207.1 gi|148642761|ref|YP_001273274.1| - 0.073 13.8 0.0 0.073 13.8 0.0 2.6 2 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|148642761|ref|YP_001273274.1| - 0.08 12.4 0.8 0.6 9.6 0.2 2.6 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Mitofilin PF09731.4 gi|148642761|ref|YP_001273274.1| - 0.26 9.9 22.7 0.11 11.1 14.3 1.5 2 0 0 2 2 2 0 Mitochondrial inner membrane protein SPOUT_MTase PF02590.12 gi|148642761|ref|YP_001273274.1| - 4.7 6.9 6.6 0.39 10.4 0.1 2.6 2 1 1 3 3 2 0 Predicted SPOUT methyltransferase Prefoldin PF02996.12 gi|148642762|ref|YP_001273275.1| - 1.4e-27 95.6 1.1 1.9e-27 95.2 0.7 1.1 1 0 0 1 1 1 1 Prefoldin subunit NPV_P10 PF05531.7 gi|148642762|ref|YP_001273275.1| - 7.7e-05 22.8 7.2 0.046 13.9 0.9 2.3 2 0 0 2 2 2 2 Nucleopolyhedrovirus P10 protein Tup_N PF08581.5 gi|148642762|ref|YP_001273275.1| - 0.00036 20.6 2.0 0.043 14.0 0.2 2.1 2 0 0 2 2 2 1 Tup N-terminal Prefoldin_2 PF01920.15 gi|148642762|ref|YP_001273275.1| - 0.00046 19.8 3.8 0.092 12.5 0.6 2.3 2 0 0 2 2 2 2 Prefoldin subunit Phasin_2 PF09361.5 gi|148642762|ref|YP_001273275.1| - 0.0034 17.3 2.2 0.041 13.8 0.3 2.2 2 0 0 2 2 2 1 Phasin protein Seryl_tRNA_N PF02403.17 gi|148642762|ref|YP_001273275.1| - 0.0091 15.9 4.3 0.63 10.0 0.2 2.2 2 0 0 2 2 2 2 Seryl-tRNA synthetase N-terminal domain DUF2937 PF11157.3 gi|148642762|ref|YP_001273275.1| - 0.011 15.0 0.9 0.87 8.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) FliD_N PF02465.13 gi|148642762|ref|YP_001273275.1| - 0.038 14.3 0.4 0.37 11.1 0.0 2.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Nsp1_C PF05064.8 gi|148642762|ref|YP_001273275.1| - 0.046 13.3 5.6 2.4 7.8 0.1 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region DASH_Dam1 PF08653.5 gi|148642762|ref|YP_001273275.1| - 0.067 12.9 1.1 0.15 11.8 0.1 2.0 2 0 0 2 2 2 0 DASH complex subunit Dam1 Lectin_N PF03954.9 gi|148642762|ref|YP_001273275.1| - 0.071 12.5 0.1 0.11 11.9 0.1 1.3 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain BLOC1_2 PF10046.4 gi|148642762|ref|YP_001273275.1| - 0.15 12.1 5.7 3 8.0 0.9 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TFIIA_gamma_N PF02268.11 gi|148642762|ref|YP_001273275.1| - 0.16 11.5 0.7 4.8 6.8 0.0 2.4 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain DUF1664 PF07889.7 gi|148642762|ref|YP_001273275.1| - 0.18 11.6 4.0 0.26 11.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Phage_GP20 PF06810.6 gi|148642762|ref|YP_001273275.1| - 0.2 11.0 7.3 1.3 8.3 0.9 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 YlqD PF11068.3 gi|148642762|ref|YP_001273275.1| - 0.25 11.3 5.3 3.6 7.6 0.6 2.3 1 1 1 2 2 2 0 YlqD protein Snf7 PF03357.16 gi|148642762|ref|YP_001273275.1| - 0.33 10.3 5.8 1.7 8.0 4.0 1.9 1 1 0 1 1 1 0 Snf7 Cortex-I_coil PF09304.5 gi|148642762|ref|YP_001273275.1| - 0.55 10.3 5.0 0.67 10.0 0.3 2.1 2 0 0 2 2 2 0 Cortexillin I, coiled coil MerR-DNA-bind PF09278.6 gi|148642762|ref|YP_001273275.1| - 2.5 8.5 5.4 1.4 9.4 0.1 2.4 2 1 1 3 3 3 0 MerR, DNA binding Ribosomal_L18ae PF01775.12 gi|148642763|ref|YP_001273276.1| - 1.5e-10 41.0 0.4 3.1e-10 40.0 0.2 1.5 1 1 0 1 1 1 1 Ribosomal L18ae/LX protein domain DUF2540 PF10802.3 gi|148642763|ref|YP_001273276.1| - 0.13 11.9 0.2 0.23 11.1 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2540) eIF-6 PF01912.13 gi|148642764|ref|YP_001273277.1| - 2.3e-63 212.9 7.2 2.8e-63 212.6 5.0 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|148642765|ref|YP_001273278.1| - 1.3e-26 92.0 2.2 1.4e-26 91.9 1.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|148642766|ref|YP_001273279.1| - 1.8e-19 68.9 14.5 2.2e-19 68.6 10.0 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Asn_synthase PF00733.16 gi|148642767|ref|YP_001273280.1| - 0.028 13.8 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.8 gi|148642767|ref|YP_001273280.1| - 0.041 13.1 0.1 0.08 12.2 0.0 1.5 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Pyr_redox PF00070.22 gi|148642767|ref|YP_001273280.1| - 0.064 13.6 0.0 0.23 11.9 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase dsDNA_bind PF01984.15 gi|148642768|ref|YP_001273281.1| - 2.5e-28 98.2 24.4 3.1e-28 97.8 16.9 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF3333 PF11812.3 gi|148642768|ref|YP_001273281.1| - 0.054 13.4 4.1 0.066 13.2 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) LKAAEAR PF15478.1 gi|148642768|ref|YP_001273281.1| - 0.07 13.3 8.4 0.091 13.0 5.8 1.2 1 0 0 1 1 1 0 Family of unknown function with LKAAEAR motif Urease_gamma PF00547.13 gi|148642768|ref|YP_001273281.1| - 0.29 11.2 4.0 0.13 12.2 0.6 1.8 1 1 1 2 2 2 0 Urease, gamma subunit PP_kinase_N PF13089.1 gi|148642768|ref|YP_001273281.1| - 4.4 7.4 8.3 11 6.2 5.8 1.8 1 1 0 1 1 1 0 Polyphosphate kinase N-terminal domain Ribosomal_S19e PF01090.14 gi|148642769|ref|YP_001273282.1| - 4.4e-59 197.9 0.0 4.9e-59 197.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.8 gi|148642769|ref|YP_001273282.1| - 0.074 12.6 0.0 8.4 6.0 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus CRS1_YhbY PF01985.16 gi|148642770|ref|YP_001273283.1| - 6e-21 74.2 2.0 6.5e-21 74.1 1.4 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Cas_Csx8 PF09657.5 gi|148642770|ref|YP_001273283.1| - 0.0037 16.0 2.8 0.0038 16.0 2.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein Csx8 (Cas_Csx8) Pox_G5 PF04599.7 gi|148642770|ref|YP_001273283.1| - 0.0087 14.7 3.5 0.01 14.5 2.4 1.0 1 0 0 1 1 1 1 Poxvirus G5 protein CUT PF02376.10 gi|148642770|ref|YP_001273283.1| - 0.019 14.7 0.4 0.032 14.0 0.2 1.5 1 1 0 1 1 1 0 CUT domain GDE_C PF06202.9 gi|148642770|ref|YP_001273283.1| - 0.043 12.5 0.2 0.049 12.3 0.1 1.0 1 0 0 1 1 1 0 Amylo-alpha-1,6-glucosidase Rpr2 PF04032.11 gi|148642771|ref|YP_001273284.1| - 2.5e-18 65.7 0.3 3.5e-18 65.2 0.2 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain TF_Zn_Ribbon PF08271.7 gi|148642771|ref|YP_001273284.1| - 0.0055 15.9 0.5 0.012 14.9 0.4 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding Zn_ribbon_recom PF13408.1 gi|148642771|ref|YP_001273284.1| - 0.011 15.9 1.1 0.011 15.9 0.7 2.3 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain NMD3 PF04981.8 gi|148642771|ref|YP_001273284.1| - 0.012 14.7 0.9 0.024 13.7 0.6 1.5 1 1 0 1 1 1 0 NMD3 family DZR PF12773.2 gi|148642771|ref|YP_001273284.1| - 0.018 14.8 0.2 0.035 13.9 0.1 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-3CxxC PF13695.1 gi|148642771|ref|YP_001273284.1| - 0.028 14.6 2.1 0.04 14.1 1.3 1.5 1 1 0 1 1 1 0 Zinc-binding domain DUF3133 PF11331.3 gi|148642771|ref|YP_001273284.1| - 0.055 13.0 1.4 0.1 12.1 0.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3133) SBP PF03110.9 gi|148642771|ref|YP_001273284.1| - 0.071 13.3 3.0 1.1 9.5 0.2 2.2 1 1 1 2 2 2 0 SBP domain Nudix_N_2 PF14803.1 gi|148642771|ref|YP_001273284.1| - 0.085 12.5 0.6 5.8 6.6 0.0 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-CHY PF05495.7 gi|148642771|ref|YP_001273284.1| - 0.091 12.9 2.2 3.1 8.0 1.9 2.1 1 1 1 2 2 2 0 CHY zinc finger zinc_ribbon_6 PF14599.1 gi|148642771|ref|YP_001273284.1| - 0.27 11.0 2.4 0.42 10.4 0.0 2.2 2 1 0 2 2 2 0 Zinc-ribbon RRN7 PF11781.3 gi|148642771|ref|YP_001273284.1| - 0.59 9.6 4.6 3.1 7.3 0.0 2.4 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 bPH_1 PF08000.6 gi|148642772|ref|YP_001273285.1| - 4.4e-31 107.0 0.9 4.7e-31 107.0 0.6 1.1 1 0 0 1 1 1 1 Bacterial PH domain DUF4498 PF14926.1 gi|148642772|ref|YP_001273285.1| - 0.07 12.2 0.0 0.088 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4498) SoxZ PF08770.6 gi|148642772|ref|YP_001273285.1| - 0.086 12.2 0.1 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Sulphur oxidation protein SoxZ AAA_18 PF13238.1 gi|148642773|ref|YP_001273286.1| - 4.1e-26 91.7 0.2 5.3e-26 91.4 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|148642773|ref|YP_001273286.1| - 7.5e-14 52.5 0.4 1.3e-13 51.8 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|148642773|ref|YP_001273286.1| - 4.8e-06 26.5 0.0 0.00094 19.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|148642773|ref|YP_001273286.1| - 1.2e-05 25.2 0.0 8.6e-05 22.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|148642773|ref|YP_001273286.1| - 0.0006 20.0 0.0 0.0011 19.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|148642773|ref|YP_001273286.1| - 0.00074 19.2 0.0 0.0018 18.0 0.0 1.6 2 0 0 2 2 2 1 NTPase KTI12 PF08433.5 gi|148642773|ref|YP_001273286.1| - 0.00088 18.5 0.0 0.0013 18.0 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 SKI PF01202.17 gi|148642773|ref|YP_001273286.1| - 0.01 15.7 0.0 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 Shikimate kinase Zeta_toxin PF06414.7 gi|148642773|ref|YP_001273286.1| - 0.012 14.6 0.0 0.024 13.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|148642773|ref|YP_001273286.1| - 0.015 15.1 0.0 0.028 14.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|148642773|ref|YP_001273286.1| - 0.02 14.5 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Thymidylate_kin PF02223.12 gi|148642773|ref|YP_001273286.1| - 0.024 14.0 0.0 0.96 8.7 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase GFRP PF06399.8 gi|148642773|ref|YP_001273286.1| - 0.033 13.7 0.0 0.46 10.1 0.0 2.3 2 1 0 2 2 2 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) SRPRB PF09439.5 gi|148642773|ref|YP_001273286.1| - 0.056 12.6 0.0 0.26 10.4 0.0 1.9 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit RuvB_N PF05496.7 gi|148642773|ref|YP_001273286.1| - 0.056 12.4 0.0 0.07 12.1 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|148642773|ref|YP_001273286.1| - 0.061 12.9 0.0 0.094 12.3 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|148642773|ref|YP_001273286.1| - 0.069 13.1 0.1 0.088 12.7 0.1 1.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|148642773|ref|YP_001273286.1| - 0.093 11.4 0.0 0.15 10.7 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_16 PF13191.1 gi|148642773|ref|YP_001273286.1| - 0.12 12.3 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain IPT PF01745.11 gi|148642773|ref|YP_001273286.1| - 0.13 11.4 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Isopentenyl transferase TGS PF02824.16 gi|148642774|ref|YP_001273287.1| - 9.1e-22 76.6 0.1 1.3e-21 76.2 0.1 1.2 1 0 0 1 1 1 1 TGS domain GTP_EFTU PF00009.22 gi|148642774|ref|YP_001273287.1| - 0.0071 15.8 0.2 0.033 13.6 0.1 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|148642774|ref|YP_001273287.1| - 0.033 13.4 0.1 0.05 12.8 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family MMR_HSR1_C PF08438.5 gi|148642774|ref|YP_001273287.1| - 0.054 13.7 0.1 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 GTPase of unknown function C-terminal ATP_bind_1 PF03029.12 gi|148642774|ref|YP_001273287.1| - 0.13 11.8 0.1 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.18 gi|148642775|ref|YP_001273288.1| - 3.4e-21 75.3 0.1 5.4e-21 74.7 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|148642775|ref|YP_001273288.1| - 3.3e-15 55.6 0.1 4.8e-15 55.1 0.1 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.16 gi|148642775|ref|YP_001273288.1| - 8.8e-05 21.8 0.1 0.00027 20.2 0.1 1.8 1 1 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|148642775|ref|YP_001273288.1| - 0.00064 20.2 0.0 0.002 18.6 0.0 1.8 2 0 0 2 2 2 1 Miro-like protein DUF258 PF03193.11 gi|148642775|ref|YP_001273288.1| - 0.00073 18.7 0.4 0.001 18.2 0.3 1.6 1 1 0 1 1 1 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|148642775|ref|YP_001273288.1| - 0.0022 17.8 1.5 0.18 11.5 0.1 2.5 2 1 1 3 3 3 1 Dynamin family AAA_28 PF13521.1 gi|148642775|ref|YP_001273288.1| - 0.01 15.7 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|148642775|ref|YP_001273288.1| - 0.011 14.8 1.7 0.014 14.5 0.1 1.9 3 0 0 3 3 3 0 AIG1 family ArgK PF03308.11 gi|148642775|ref|YP_001273288.1| - 0.012 14.4 0.0 0.024 13.4 0.0 1.5 1 0 0 1 1 1 0 ArgK protein SRPRB PF09439.5 gi|148642775|ref|YP_001273288.1| - 0.022 13.9 0.0 0.022 13.9 0.0 2.1 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit AAA_16 PF13191.1 gi|148642775|ref|YP_001273288.1| - 0.031 14.2 0.0 0.072 13.0 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|148642775|ref|YP_001273288.1| - 0.035 14.4 0.1 0.058 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain MCM PF00493.18 gi|148642775|ref|YP_001273288.1| - 0.039 12.7 0.1 0.053 12.3 0.0 1.2 1 0 0 1 1 1 0 MCM2/3/5 family KTI12 PF08433.5 gi|148642775|ref|YP_001273288.1| - 0.04 13.1 0.0 0.1 11.8 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 cobW PF02492.14 gi|148642775|ref|YP_001273288.1| - 0.059 12.8 0.1 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|148642775|ref|YP_001273288.1| - 0.062 13.1 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF31 PF01732.11 gi|148642775|ref|YP_001273288.1| - 0.067 12.5 0.1 0.082 12.2 0.0 1.1 1 0 0 1 1 1 0 Putative peptidase (DUF31) MobB PF03205.9 gi|148642775|ref|YP_001273288.1| - 0.072 12.7 0.0 0.11 12.1 0.0 1.5 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|148642775|ref|YP_001273288.1| - 0.093 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Ras PF00071.17 gi|148642775|ref|YP_001273288.1| - 0.099 12.0 0.0 0.22 10.9 0.0 1.7 1 1 0 1 1 1 0 Ras family AAA_30 PF13604.1 gi|148642775|ref|YP_001273288.1| - 0.13 11.8 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain STT3 PF02516.9 gi|148642776|ref|YP_001273289.1| - 3.5e-73 247.2 32.2 4.8e-73 246.7 22.3 1.1 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Topoisom_bac PF01131.15 gi|148642777|ref|YP_001273290.1| - 4e-113 378.2 0.5 5.2e-113 377.8 0.3 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|148642777|ref|YP_001273290.1| - 1.9e-23 81.6 28.8 5.6e-14 51.3 3.6 3.3 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|148642777|ref|YP_001273290.1| - 9.5e-14 51.1 0.9 2.4e-13 49.9 0.1 2.2 2 1 0 2 2 2 1 Toprim domain zinc_ribbon_2 PF13240.1 gi|148642777|ref|YP_001273290.1| - 0.012 15.1 6.1 0.059 12.8 0.5 3.3 2 1 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|148642777|ref|YP_001273290.1| - 0.014 15.1 4.1 0.045 13.5 0.6 2.6 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) ADK_lid PF05191.9 gi|148642777|ref|YP_001273290.1| - 4.8 6.9 13.6 0.14 11.8 1.3 3.6 3 1 0 3 3 3 0 Adenylate kinase, active site lid DUF3039 PF11238.3 gi|148642778|ref|YP_001273291.1| - 0.0015 17.9 0.5 0.0028 17.0 0.4 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3039) Agenet PF05641.7 gi|148642778|ref|YP_001273291.1| - 0.026 14.6 0.4 0.028 14.5 0.3 1.2 1 0 0 1 1 1 0 Agenet domain DUF4428 PF14471.1 gi|148642778|ref|YP_001273291.1| - 0.13 12.0 3.7 0.19 11.4 2.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) FYVE PF01363.16 gi|148642778|ref|YP_001273291.1| - 0.17 11.8 2.0 1.4 8.8 1.4 1.9 1 1 0 1 1 1 0 FYVE zinc finger Cas_CXXC_CXXC PF09706.5 gi|148642778|ref|YP_001273291.1| - 0.33 11.1 5.7 2.4 8.3 0.2 2.1 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) C1_1 PF00130.17 gi|148642778|ref|YP_001273291.1| - 0.49 10.1 2.7 19 5.1 1.8 2.0 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF581 PF04570.9 gi|148642778|ref|YP_001273291.1| - 0.69 9.2 5.2 0.89 8.8 3.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF581) XPA_N PF01286.13 gi|148642778|ref|YP_001273291.1| - 1 9.1 5.7 6.3 6.5 0.5 2.2 2 0 0 2 2 2 0 XPA protein N-terminal HAD PF12710.2 gi|148642779|ref|YP_001273292.1| - 6.3e-17 62.3 0.6 6.3e-17 62.3 0.4 2.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|148642779|ref|YP_001273292.1| - 7.6e-13 49.3 0.6 7.6e-13 49.3 0.4 3.2 2 2 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|148642779|ref|YP_001273292.1| - 2.3e-10 40.4 1.1 2.3e-10 40.4 0.8 4.5 2 2 2 4 4 4 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|148642779|ref|YP_001273292.1| - 9.2e-08 31.5 7.2 2.2e-07 30.2 0.2 3.3 3 1 0 4 4 4 1 Putative Phosphatase HAD_2 PF13419.1 gi|148642779|ref|YP_001273292.1| - 2.1e-05 24.8 5.3 5.8e-05 23.3 0.0 3.6 3 2 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Prok-TraM PF09228.5 gi|148642779|ref|YP_001273292.1| - 5.4 7.2 11.7 1.8 8.7 0.7 3.4 2 1 1 3 3 3 0 Prokaryotic Transcriptional repressor TraM Tweety PF04906.8 gi|148642779|ref|YP_001273292.1| - 6.3 5.0 5.1 5.9 5.2 2.0 2.0 1 1 0 1 1 1 0 Tweety TBP PF00352.16 gi|148642780|ref|YP_001273293.1| - 3.2e-65 215.4 0.0 9.2e-34 114.6 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|148642780|ref|YP_001273293.1| - 1.9e-05 24.6 0.0 0.17 11.9 0.0 2.5 1 1 2 3 3 3 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|148642780|ref|YP_001273293.1| - 0.19 11.0 0.5 0.4 10.0 0.1 1.7 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 CYTH PF01928.16 gi|148642781|ref|YP_001273294.1| - 5.5e-35 120.7 3.4 6.1e-35 120.5 2.4 1.0 1 0 0 1 1 1 1 CYTH domain Glyoxalase_5 PF14696.1 gi|148642781|ref|YP_001273294.1| - 0.052 13.4 0.3 0.15 11.9 0.1 1.8 2 0 0 2 2 2 0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Sec39 PF08314.6 gi|148642781|ref|YP_001273294.1| - 0.11 10.3 0.0 0.12 10.2 0.0 1.1 1 0 0 1 1 1 0 Secretory pathway protein Sec39 HMGL-like PF00682.14 gi|148642782|ref|YP_001273295.1| - 5.1e-73 245.6 0.3 7.7e-73 245.0 0.2 1.3 1 0 0 1 1 1 1 HMGL-like DUF3150 PF11348.3 gi|148642782|ref|YP_001273295.1| - 0.00059 19.0 0.2 0.003 16.7 0.1 2.0 3 0 0 3 3 3 1 Protein of unknown function (DUF3150) Aconitase PF00330.15 gi|148642783|ref|YP_001273296.1| - 6.9e-91 305.0 7.3 2.1e-62 211.1 2.7 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF98 PF01947.11 gi|148642784|ref|YP_001273297.1| - 2.3e-30 105.3 0.1 3.2e-30 104.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF98) Chor_lyase PF04345.8 gi|148642784|ref|YP_001273297.1| - 1.5e-06 27.7 0.0 2.1e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Chorismate lyase UTRA PF07702.8 gi|148642784|ref|YP_001273297.1| - 1.4e-05 24.7 0.0 1.7e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 UTRA domain XPG_I PF00867.13 gi|148642785|ref|YP_001273298.1| - 5.5e-28 96.8 0.0 1.7e-27 95.3 0.0 1.8 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|148642785|ref|YP_001273298.1| - 6.7e-19 68.0 0.0 1.3e-18 67.1 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|148642785|ref|YP_001273298.1| - 0.025 14.8 1.6 0.027 14.6 0.1 1.9 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|148642785|ref|YP_001273298.1| - 0.043 13.7 0.2 0.13 12.1 0.1 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF2119 PF09892.4 gi|148642786|ref|YP_001273299.1| - 7e-80 266.8 1.2 8.2e-80 266.6 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) AdoHcyase PF05221.12 gi|148642787|ref|YP_001273300.1| - 2.9e-57 193.6 0.1 3.2e-57 193.5 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|148642787|ref|YP_001273300.1| - 1.9e-54 183.8 1.4 1.9e-54 183.8 0.9 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|148642787|ref|YP_001273300.1| - 1.1e-09 37.6 0.1 2.2e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|148642787|ref|YP_001273300.1| - 2.1e-08 33.7 0.0 4.7e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|148642787|ref|YP_001273300.1| - 0.00026 20.9 0.1 0.00077 19.4 0.1 1.9 1 1 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|148642787|ref|YP_001273300.1| - 0.04 13.4 0.3 0.11 12.1 0.1 1.7 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Aldo_ket_red PF00248.16 gi|148642788|ref|YP_001273301.1| - 5.2e-40 137.0 0.0 6.6e-40 136.7 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|148642788|ref|YP_001273301.1| - 4.1e-08 33.4 11.4 8.2e-08 32.4 7.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642788|ref|YP_001273301.1| - 1.2e-07 31.8 13.0 2.9e-07 30.6 9.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148642788|ref|YP_001273301.1| - 2.9e-07 30.3 10.6 9.5e-07 28.7 7.7 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148642788|ref|YP_001273301.1| - 3e-05 24.3 7.1 0.0036 17.6 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148642788|ref|YP_001273301.1| - 0.00015 21.5 3.7 0.00015 21.5 2.6 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148642788|ref|YP_001273301.1| - 0.0002 21.0 15.8 0.0035 17.0 2.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148642788|ref|YP_001273301.1| - 0.00099 18.6 11.8 0.0075 15.8 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148642788|ref|YP_001273301.1| - 0.023 15.0 2.2 0.023 15.0 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|148642788|ref|YP_001273301.1| - 0.033 14.0 9.7 0.3 10.9 1.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain DAHP_synth_1 PF00793.15 gi|148642788|ref|YP_001273301.1| - 0.097 11.3 0.0 0.17 10.5 0.0 1.3 1 0 0 1 1 1 0 DAHP synthetase I family Fer4_2 PF12797.2 gi|148642788|ref|YP_001273301.1| - 0.1 12.5 16.5 0.1 12.5 3.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642788|ref|YP_001273301.1| - 0.19 12.1 14.1 0.52 10.7 9.8 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642788|ref|YP_001273301.1| - 2.4 8.9 14.1 3.8 8.3 1.8 2.5 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain NADH_4Fe-4S PF10589.4 gi|148642788|ref|YP_001273301.1| - 2.6 7.2 8.3 0.19 10.9 0.8 2.3 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Fer4_20 PF14691.1 gi|148642788|ref|YP_001273301.1| - 8.3 6.0 8.4 1.6 8.4 0.8 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ThiF PF00899.16 gi|148642789|ref|YP_001273302.1| - 5.4e-44 149.3 1.0 7.5e-44 148.8 0.7 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|148642789|ref|YP_001273302.1| - 7.7e-08 31.8 0.0 2.1e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 MoeZ/MoeB domain Saccharop_dh PF03435.13 gi|148642789|ref|YP_001273302.1| - 0.00027 20.0 1.2 0.00054 19.0 0.8 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|148642789|ref|YP_001273302.1| - 0.0026 16.9 2.3 0.048 12.8 0.4 2.2 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|148642789|ref|YP_001273302.1| - 0.004 16.8 0.2 0.0061 16.2 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|148642789|ref|YP_001273302.1| - 0.0068 15.8 0.3 0.011 15.1 0.2 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|148642789|ref|YP_001273302.1| - 0.0097 16.1 0.7 0.022 14.9 0.5 1.6 1 1 0 1 1 1 1 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|148642789|ref|YP_001273302.1| - 0.01 15.9 1.8 0.085 12.9 0.2 2.1 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.16 gi|148642789|ref|YP_001273302.1| - 0.044 13.3 0.2 0.063 12.8 0.2 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ApbA PF02558.11 gi|148642789|ref|YP_001273302.1| - 0.054 12.9 0.3 0.1 12.0 0.2 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|148642789|ref|YP_001273302.1| - 0.082 12.4 0.3 0.16 11.5 0.2 1.4 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Semialdhyde_dh PF01118.19 gi|148642789|ref|YP_001273302.1| - 0.13 12.6 4.0 5.3 7.3 2.7 2.3 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|148642789|ref|YP_001273302.1| - 0.44 10.9 1.9 1.8 9.0 1.3 2.0 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain DDE_Tnp_IS66 PF03050.9 gi|148642790|ref|YP_001273303.1| - 4.5e-08 32.6 3.0 2.4e-07 30.2 2.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family Zn_Tnp_IS1595 PF12760.2 gi|148642790|ref|YP_001273303.1| - 0.00061 19.5 2.0 0.0015 18.2 1.4 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148642790|ref|YP_001273303.1| - 0.03 13.6 1.7 0.28 10.5 1.1 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|148642790|ref|YP_001273303.1| - 0.063 13.2 3.8 3.5 7.6 1.0 2.8 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|148642790|ref|YP_001273303.1| - 0.098 12.9 0.2 0.31 11.3 0.1 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|148642790|ref|YP_001273303.1| - 0.33 10.6 4.6 6 6.5 3.2 2.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|148642790|ref|YP_001273303.1| - 0.68 10.0 9.3 0.53 10.3 0.4 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TetR_C_8 PF14278.1 gi|148642790|ref|YP_001273303.1| - 1.3 9.4 6.9 0.75 10.2 0.5 3.6 2 1 0 3 3 3 0 Transcriptional regulator C-terminal region Transposase_mut PF00872.13 gi|148642790|ref|YP_001273303.1| - 4.1 5.8 7.2 25 3.2 2.6 2.9 2 1 1 3 3 3 0 Transposase, Mutator family UvrD-helicase PF00580.16 gi|148642791|ref|YP_001273304.1| - 7.5e-17 61.5 0.0 7.5e-17 61.5 0.0 6.9 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.1 gi|148642791|ref|YP_001273304.1| - 1.9e-08 33.9 0.0 3.2e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Part of AAA domain AAA_11 PF13086.1 gi|148642791|ref|YP_001273304.1| - 4e-05 23.2 0.0 4e-05 23.2 0.0 3.3 4 0 0 4 4 4 1 AAA domain AAA_30 PF13604.1 gi|148642791|ref|YP_001273304.1| - 0.00036 20.1 0.0 0.00077 19.0 0.0 1.5 2 0 0 2 2 2 1 AAA domain zf-ribbon_3 PF13248.1 gi|148642791|ref|YP_001273304.1| - 0.018 14.2 0.4 0.051 12.7 0.2 1.8 1 0 0 1 1 1 0 zinc-ribbon domain TruB_N PF01509.13 gi|148642792|ref|YP_001273305.1| - 5.3e-27 94.8 0.3 1.5e-23 83.6 0.2 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|148642792|ref|YP_001273305.1| - 6.6e-20 70.7 0.1 1.3e-19 69.8 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|148642792|ref|YP_001273305.1| - 3e-18 65.3 0.4 8.9e-17 60.5 0.1 2.3 2 0 0 2 2 2 1 PUA domain GnsAB PF08178.6 gi|148642792|ref|YP_001273305.1| - 0.055 13.1 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 GnsA/GnsB family KOW PF00467.24 gi|148642793|ref|YP_001273306.1| - 3.1e-05 23.4 0.2 4.9e-05 22.8 0.2 1.5 1 1 0 1 1 1 1 KOW motif Cytidylate_kin2 PF13189.1 gi|148642794|ref|YP_001273307.1| - 1.6e-22 80.2 0.9 7.9e-22 78.0 0.6 1.8 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|148642794|ref|YP_001273307.1| - 2.2e-14 53.8 0.1 2.7e-14 53.5 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|148642794|ref|YP_001273307.1| - 3.7e-13 50.3 0.0 5.7e-13 49.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|148642794|ref|YP_001273307.1| - 5.7e-07 29.0 0.1 7.9e-07 28.6 0.1 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA_33 PF13671.1 gi|148642794|ref|YP_001273307.1| - 5.3e-05 23.1 0.1 0.005 16.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|148642794|ref|YP_001273307.1| - 5.7e-05 23.0 0.7 0.0001 22.1 0.5 1.5 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.17 gi|148642794|ref|YP_001273307.1| - 0.0018 18.1 0.2 0.0041 16.9 0.1 1.8 1 1 0 1 1 1 1 Adenylate kinase PRK PF00485.13 gi|148642794|ref|YP_001273307.1| - 0.033 13.7 0.4 0.16 11.5 0.2 1.9 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF162 PF02589.10 gi|148642794|ref|YP_001273307.1| - 0.052 13.0 0.2 0.072 12.5 0.2 1.1 1 0 0 1 1 1 0 Uncharacterised ACR, YkgG family COG1556 AAA_28 PF13521.1 gi|148642794|ref|YP_001273307.1| - 0.052 13.4 0.1 0.088 12.7 0.0 1.3 1 1 0 1 1 1 0 AAA domain Ribosomal_L34e PF01199.13 gi|148642795|ref|YP_001273308.1| - 3e-28 97.8 7.2 3.2e-28 97.7 5.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e Prim_Zn_Ribbon PF08273.7 gi|148642795|ref|YP_001273308.1| - 0.049 13.7 0.2 8.7 6.5 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DZR PF12773.2 gi|148642795|ref|YP_001273308.1| - 0.14 11.9 1.4 0.31 10.9 0.9 1.5 1 1 0 1 1 1 0 Double zinc ribbon GFA PF04828.9 gi|148642795|ref|YP_001273308.1| - 0.17 11.8 1.5 1.5 8.7 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Tnp_zf-ribbon_2 PF13842.1 gi|148642795|ref|YP_001273308.1| - 0.24 11.8 1.9 4 7.9 0.2 2.3 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF2197 PF09963.4 gi|148642795|ref|YP_001273308.1| - 0.37 10.7 2.1 0.53 10.2 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) PHD PF00628.24 gi|148642795|ref|YP_001273308.1| - 0.41 10.3 2.5 3.7 7.3 1.8 2.0 1 1 0 1 1 1 0 PHD-finger zf-H2C2_2 PF13465.1 gi|148642795|ref|YP_001273308.1| - 1.5 9.2 7.5 12 6.4 0.9 2.5 2 0 0 2 2 2 0 Zinc-finger double domain FhuF_C PF11575.3 gi|148642795|ref|YP_001273308.1| - 2.3 7.9 5.6 5.6 6.7 0.3 2.9 3 0 0 3 3 3 0 FhuF 2Fe-2S C-terminal domain DUF106 PF01956.11 gi|148642796|ref|YP_001273309.1| - 1.6e-42 144.8 4.4 1.9e-42 144.6 3.0 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|148642796|ref|YP_001273309.1| - 1.1e-05 25.1 1.2 1.4e-05 24.8 0.8 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein DUF2208 PF09973.4 gi|148642796|ref|YP_001273309.1| - 0.00093 18.5 4.0 0.002 17.4 2.8 1.7 1 1 0 1 1 1 1 Predicted membrane protein (DUF2208) DPM3 PF08285.6 gi|148642796|ref|YP_001273309.1| - 0.0031 17.3 4.6 0.55 10.1 0.0 2.6 2 1 0 2 2 2 2 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF4199 PF13858.1 gi|148642796|ref|YP_001273309.1| - 0.0031 17.4 4.4 0.0031 17.4 3.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF4199) DUF2207 PF09972.4 gi|148642796|ref|YP_001273309.1| - 0.0048 15.5 0.5 0.006 15.2 0.3 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) Bul1_C PF04426.7 gi|148642796|ref|YP_001273309.1| - 0.0092 15.2 0.9 0.012 14.8 0.6 1.1 1 0 0 1 1 1 1 Bul1 C terminus Phage_Gp23 PF10669.4 gi|148642796|ref|YP_001273309.1| - 0.017 15.2 0.3 0.022 14.8 0.2 1.2 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) DUF443 PF04276.7 gi|148642796|ref|YP_001273309.1| - 0.029 13.7 1.3 0.073 12.5 0.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF443) DUF1090 PF06476.7 gi|148642796|ref|YP_001273309.1| - 0.036 13.7 6.1 0.05 13.2 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) CHD5 PF04420.9 gi|148642796|ref|YP_001273309.1| - 0.076 12.6 8.3 0.12 12.0 1.1 2.1 1 1 1 2 2 2 0 CHD5-like protein Sec62 PF03839.11 gi|148642796|ref|YP_001273309.1| - 0.077 12.3 0.2 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 Translocation protein Sec62 DUF2149 PF09919.4 gi|148642796|ref|YP_001273309.1| - 0.084 12.9 2.4 0.15 12.1 1.7 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) Bap31 PF05529.7 gi|148642796|ref|YP_001273309.1| - 2.4 7.5 8.3 0.76 9.2 3.9 1.4 1 1 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF2232 PF09991.4 gi|148642796|ref|YP_001273309.1| - 3.2 6.6 14.8 26 3.6 10.2 2.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2232) AAA_18 PF13238.1 gi|148642797|ref|YP_001273310.1| - 2.3e-20 73.1 0.2 3.4e-20 72.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|148642797|ref|YP_001273310.1| - 6.1e-09 36.7 0.0 7.5e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|148642797|ref|YP_001273310.1| - 1e-05 25.4 0.0 2.3e-05 24.2 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|148642797|ref|YP_001273310.1| - 7.4e-05 22.7 0.1 0.0004 20.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|148642797|ref|YP_001273310.1| - 0.00025 20.1 0.2 0.00046 19.3 0.0 1.5 2 0 0 2 2 2 1 Zeta toxin cobW PF02492.14 gi|148642797|ref|YP_001273310.1| - 0.00092 18.7 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|148642797|ref|YP_001273310.1| - 0.0011 18.7 0.1 0.016 14.9 0.0 2.6 3 0 0 3 3 3 1 Part of AAA domain KTI12 PF08433.5 gi|148642797|ref|YP_001273310.1| - 0.0018 17.5 0.1 0.002 17.4 0.1 1.3 1 1 0 1 1 1 1 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|148642797|ref|YP_001273310.1| - 0.0057 16.3 0.2 0.014 15.1 0.0 1.7 2 0 0 2 2 2 1 NTPase Arch_ATPase PF01637.13 gi|148642797|ref|YP_001273310.1| - 0.0065 16.2 0.1 0.013 15.2 0.0 1.5 2 0 0 2 2 2 1 Archaeal ATPase AAA_14 PF13173.1 gi|148642797|ref|YP_001273310.1| - 0.018 14.9 0.1 0.12 12.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|148642797|ref|YP_001273310.1| - 0.025 13.4 0.0 0.036 12.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain ADK PF00406.17 gi|148642797|ref|YP_001273310.1| - 0.03 14.1 0.2 0.34 10.7 0.0 2.4 2 1 0 2 2 2 0 Adenylate kinase SecY PF00344.15 gi|148642798|ref|YP_001273311.1| - 4.2e-92 308.7 22.5 5.1e-92 308.4 15.6 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|148642798|ref|YP_001273311.1| - 1e-13 50.5 0.7 2.7e-13 49.1 0.5 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Rep_fac_C PF08542.6 gi|148642798|ref|YP_001273311.1| - 0.067 13.1 0.2 0.19 11.7 0.0 1.8 2 0 0 2 2 2 0 Replication factor C C-terminal domain DUF2976 PF11190.3 gi|148642798|ref|YP_001273311.1| - 0.11 12.0 8.7 0.53 9.8 0.0 4.5 4 0 0 4 4 4 0 Protein of unknown function (DUF2976) RseC_MucC PF04246.7 gi|148642798|ref|YP_001273311.1| - 3.2 7.3 6.7 0.49 9.9 0.1 2.9 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC Ninjurin PF04923.7 gi|148642798|ref|YP_001273311.1| - 9.6 5.9 7.7 4.6 7.0 2.4 2.6 2 1 0 2 2 2 0 Ninjurin Ribosomal_L18e PF00828.14 gi|148642799|ref|YP_001273312.1| - 1.5e-33 115.9 0.4 1.9e-33 115.5 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|148642800|ref|YP_001273313.1| - 9e-18 63.6 0.1 1.4e-17 63.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|148642801|ref|YP_001273314.1| - 4.9e-28 96.6 3.0 1.2e-27 95.4 2.1 1.7 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|148642801|ref|YP_001273314.1| - 1.4e-24 85.1 0.3 2.2e-24 84.5 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|148642802|ref|YP_001273315.1| - 2.1e-36 124.7 0.5 2.9e-36 124.2 0.3 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|148642802|ref|YP_001273315.1| - 3.1e-07 30.8 0.0 5.3e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.15 gi|148642803|ref|YP_001273316.1| - 1.2e-55 187.3 12.1 1.3e-55 187.1 8.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e LepA_C PF06421.7 gi|148642803|ref|YP_001273316.1| - 0.47 10.3 9.4 2 8.3 2.8 2.2 1 1 0 2 2 2 0 GTP-binding protein LepA C-terminus Ribosomal_L32e PF01655.13 gi|148642804|ref|YP_001273317.1| - 1.3e-40 137.8 0.3 1.5e-40 137.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|148642805|ref|YP_001273318.1| - 5.3e-28 97.3 12.0 5e-18 65.3 1.9 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DUF3973 PF13119.1 gi|148642805|ref|YP_001273318.1| - 0.1 12.5 0.0 2.7 7.9 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3973) BON PF04972.12 gi|148642805|ref|YP_001273318.1| - 4.9 6.9 8.6 21 4.9 0.1 3.6 4 0 0 4 4 4 0 BON domain Ribosomal_S8 PF00410.14 gi|148642806|ref|YP_001273319.1| - 5.2e-25 87.7 0.0 7.1e-25 87.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Glyco_transf_92 PF01697.22 gi|148642806|ref|YP_001273319.1| - 0.098 11.9 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 92 Ribosomal_S14 PF00253.16 gi|148642807|ref|YP_001273320.1| - 2.9e-15 55.3 3.3 3.1e-15 55.2 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.9 gi|148642807|ref|YP_001273320.1| - 0.0073 15.9 1.0 0.012 15.2 0.7 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DUF2039 PF10217.4 gi|148642807|ref|YP_001273320.1| - 0.076 13.0 3.0 0.47 10.4 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) DZR PF12773.2 gi|148642807|ref|YP_001273320.1| - 0.18 11.6 1.7 0.46 10.3 1.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon DM PF00751.13 gi|148642807|ref|YP_001273320.1| - 0.7 9.4 4.2 1.8 8.1 2.9 1.7 1 1 0 1 1 1 0 DM DNA binding domain YhfH PF14149.1 gi|148642807|ref|YP_001273320.1| - 0.88 9.4 4.9 4.2 7.2 3.5 2.0 1 1 1 2 2 2 0 YhfH-like protein Ribosomal_L5_C PF00673.16 gi|148642808|ref|YP_001273321.1| - 1.9e-25 88.3 0.2 3.9e-24 84.2 0.1 2.0 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|148642808|ref|YP_001273321.1| - 4.8e-11 42.2 0.1 1.1e-10 41.0 0.1 1.7 1 0 0 1 1 1 1 Ribosomal protein L5 A_thal_3526 PF09713.5 gi|148642808|ref|YP_001273321.1| - 0.041 14.0 0.1 0.097 12.8 0.1 1.6 1 0 0 1 1 1 0 Plant protein 1589 of unknown function (A_thal_3526) Ribosomal_S4e PF00900.15 gi|148642809|ref|YP_001273322.1| - 6.8e-28 96.1 3.1 1.3e-27 95.2 2.1 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|148642809|ref|YP_001273322.1| - 1.6e-17 63.0 2.9 2.9e-17 62.2 2.0 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|148642809|ref|YP_001273322.1| - 8.7e-12 44.2 0.8 8.7e-11 41.0 0.1 2.5 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|148642809|ref|YP_001273322.1| - 0.00095 18.7 0.8 0.0053 16.4 0.0 2.7 3 0 0 3 3 3 1 KOW motif S4_2 PF13275.1 gi|148642809|ref|YP_001273322.1| - 0.053 13.1 0.6 0.46 10.1 0.0 2.6 2 1 0 2 2 2 0 S4 domain KOW PF00467.24 gi|148642810|ref|YP_001273323.1| - 2e-06 27.2 2.3 2.5e-06 26.9 0.6 1.9 2 0 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.14 gi|148642811|ref|YP_001273324.1| - 1.8e-33 114.8 0.4 2e-33 114.7 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|148642812|ref|YP_001273325.1| - 3.5e-26 91.0 3.5 4.2e-26 90.7 2.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|148642813|ref|YP_001273326.1| - 4.5e-29 99.9 1.5 5e-29 99.7 1.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 AHSA1 PF08327.6 gi|148642813|ref|YP_001273326.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.4 1 1 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein SUI1 PF01253.17 gi|148642814|ref|YP_001273327.1| - 1.9e-19 69.2 1.6 1.9e-19 69.2 1.1 1.8 1 1 1 2 2 2 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|148642814|ref|YP_001273327.1| - 0.02 15.0 0.2 0.041 14.1 0.1 1.6 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.10 gi|148642814|ref|YP_001273327.1| - 0.32 10.1 1.4 0.45 9.7 1.0 1.2 1 0 0 1 1 1 0 DTW domain Ribosomal_L29 PF00831.18 gi|148642815|ref|YP_001273328.1| - 2.3e-18 65.5 0.4 2.7e-18 65.4 0.3 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Cob_adeno_trans PF01923.13 gi|148642815|ref|YP_001273328.1| - 0.025 14.3 0.1 0.027 14.2 0.1 1.0 1 0 0 1 1 1 0 Cobalamin adenosyltransferase CtIP_N PF10482.4 gi|148642815|ref|YP_001273328.1| - 0.086 12.6 0.3 0.095 12.4 0.2 1.3 1 1 0 1 1 1 0 Tumour-suppressor protein CtIP N-terminal domain BRCT PF00533.21 gi|148642815|ref|YP_001273328.1| - 0.087 12.9 0.0 0.097 12.8 0.0 1.1 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain DUF1313 PF07011.6 gi|148642815|ref|YP_001273328.1| - 0.11 12.2 0.1 0.15 11.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1313) DUF1192 PF06698.6 gi|148642815|ref|YP_001273328.1| - 2.2 8.1 7.3 4.7 7.0 0.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) KH_2 PF07650.12 gi|148642816|ref|YP_001273329.1| - 2.8e-15 55.6 0.0 7.9e-15 54.1 0.0 1.8 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|148642816|ref|YP_001273329.1| - 7.7e-14 51.6 0.9 1.2e-13 51.0 0.6 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|148642816|ref|YP_001273329.1| - 0.015 14.9 0.1 0.015 14.9 0.0 2.9 3 1 0 3 3 3 0 KH domain KH_5 PF13184.1 gi|148642816|ref|YP_001273329.1| - 0.047 13.4 1.0 0.19 11.5 0.0 2.4 2 0 0 2 2 2 0 NusA-like KH domain KH_3 PF13014.1 gi|148642816|ref|YP_001273329.1| - 0.058 13.0 0.3 0.058 13.0 0.2 2.7 3 1 0 3 3 3 0 KH domain KH_4 PF13083.1 gi|148642816|ref|YP_001273329.1| - 0.16 11.6 0.1 0.16 11.6 0.1 2.4 2 1 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.14 gi|148642817|ref|YP_001273330.1| - 1.2e-37 128.0 0.1 1.4e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e NUMOD1 PF07453.8 gi|148642817|ref|YP_001273330.1| - 0.12 12.2 0.1 0.3 11.0 0.1 1.7 1 0 0 1 1 1 0 NUMOD1 domain Ribosomal_S19 PF00203.16 gi|148642818|ref|YP_001273331.1| - 2.9e-27 94.0 0.1 3.9e-27 93.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 DUF4224 PF13986.1 gi|148642818|ref|YP_001273331.1| - 0.013 15.0 0.3 0.15 11.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4224) DUF4535 PF15054.1 gi|148642818|ref|YP_001273331.1| - 0.071 12.5 0.1 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4535) Ribosomal_L2_C PF03947.13 gi|148642819|ref|YP_001273332.1| - 1.1e-44 151.3 0.2 1.7e-44 150.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|148642819|ref|YP_001273332.1| - 9.2e-20 70.3 0.0 1.8e-19 69.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|148642820|ref|YP_001273333.1| - 3.5e-16 58.9 2.3 4.3e-16 58.6 1.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L23 RRM_1 PF00076.17 gi|148642820|ref|YP_001273333.1| - 0.12 11.9 0.1 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Ribosomal_L4 PF00573.17 gi|148642821|ref|YP_001273334.1| - 1.5e-46 158.2 0.5 1.7e-46 158.0 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|148642822|ref|YP_001273335.1| - 5.2e-77 258.7 0.7 6.1e-77 258.5 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|148642823|ref|YP_001273336.1| - 1e-60 205.5 0.0 1.2e-60 205.3 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase B12-binding PF02310.14 gi|148642823|ref|YP_001273336.1| - 0.078 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 B12 binding domain DUF3822 PF12864.2 gi|148642823|ref|YP_001273336.1| - 0.08 12.1 0.1 0.3 10.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3822) Methyltransf_26 PF13659.1 gi|148642824|ref|YP_001273337.1| - 6.4e-11 42.3 0.0 9.3e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|148642824|ref|YP_001273337.1| - 3.5e-10 39.5 0.0 5.9e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|148642824|ref|YP_001273337.1| - 5.4e-10 38.8 1.1 7.4e-10 38.4 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|148642824|ref|YP_001273337.1| - 1.5e-08 34.3 0.6 2e-08 33.9 0.4 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148642824|ref|YP_001273337.1| - 6.3e-07 29.9 0.1 9.4e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|148642824|ref|YP_001273337.1| - 4.2e-06 27.0 0.3 8.1e-06 26.1 0.2 1.7 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|148642824|ref|YP_001273337.1| - 2.4e-05 23.9 0.0 3.9e-05 23.2 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|148642824|ref|YP_001273337.1| - 0.0001 22.0 0.0 0.00019 21.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|148642824|ref|YP_001273337.1| - 0.00054 20.4 0.1 0.00089 19.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|148642824|ref|YP_001273337.1| - 0.0076 16.2 0.1 0.013 15.4 0.1 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase FmrO PF07091.6 gi|148642824|ref|YP_001273337.1| - 0.011 14.7 0.1 0.014 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_9 PF08003.6 gi|148642824|ref|YP_001273337.1| - 0.058 12.0 0.0 0.09 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) N6_Mtase PF02384.11 gi|148642824|ref|YP_001273337.1| - 0.065 12.2 0.1 0.71 8.8 0.1 2.0 1 1 0 1 1 1 0 N-6 DNA Methylase Methyltransf_16 PF10294.4 gi|148642824|ref|YP_001273337.1| - 0.12 11.7 0.5 0.32 10.4 0.1 1.8 2 1 0 2 2 2 0 Putative methyltransferase CPSase_L_D2 PF02786.12 gi|148642825|ref|YP_001273338.1| - 1.6e-79 266.0 0.4 2.5e-79 265.4 0.3 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|148642825|ref|YP_001273338.1| - 5.2e-43 145.6 0.0 1.4e-42 144.2 0.0 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|148642825|ref|YP_001273338.1| - 3.1e-40 136.4 0.0 7.4e-40 135.2 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATPgrasp_Ter PF15632.1 gi|148642825|ref|YP_001273338.1| - 6.2e-17 61.3 0.0 2.9e-16 59.1 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|148642825|ref|YP_001273338.1| - 4.7e-16 59.0 0.0 8.4e-16 58.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|148642825|ref|YP_001273338.1| - 4.1e-12 45.9 0.1 9.8e-12 44.6 0.1 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|148642825|ref|YP_001273338.1| - 9.7e-08 32.0 0.1 1.6e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|148642825|ref|YP_001273338.1| - 2.1e-07 30.6 0.0 1.7e-06 27.6 0.0 2.2 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GARS_A PF01071.14 gi|148642825|ref|YP_001273338.1| - 1.5e-05 24.6 0.0 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|148642825|ref|YP_001273338.1| - 0.00035 19.9 0.2 0.00056 19.3 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|148642825|ref|YP_001273338.1| - 0.002 17.4 0.2 0.0046 16.2 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain BPL_LplA_LipB PF03099.14 gi|148642826|ref|YP_001273339.1| - 1.1e-20 73.8 0.2 1.7e-20 73.2 0.1 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|148642826|ref|YP_001273339.1| - 0.0049 16.5 0.1 0.013 15.1 0.1 1.8 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain Endotoxin_N PF03945.9 gi|148642826|ref|YP_001273339.1| - 0.072 12.4 0.2 0.12 11.7 0.1 1.3 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain Cys_Met_Meta_PP PF01053.15 gi|148642827|ref|YP_001273340.1| - 1.7e-07 29.8 0.0 1.4e-06 26.8 0.0 2.0 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|148642827|ref|YP_001273340.1| - 3.2e-07 29.4 0.0 5.5e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_1_2 PF00155.16 gi|148642827|ref|YP_001273340.1| - 3e-06 26.4 0.0 7e-06 25.2 0.0 1.6 1 1 1 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|148642827|ref|YP_001273340.1| - 7.9e-05 21.9 0.0 0.00016 20.8 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|148642827|ref|YP_001273340.1| - 0.0014 17.4 0.0 0.0023 16.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V SHMT PF00464.14 gi|148642827|ref|YP_001273340.1| - 0.0061 14.9 0.0 0.0091 14.4 0.0 1.2 1 0 0 1 1 1 1 Serine hydroxymethyltransferase DUF2532 PF10811.3 gi|148642828|ref|YP_001273341.1| - 0.06 13.1 0.6 0.091 12.5 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2532) Fumerase_C PF05683.7 gi|148642829|ref|YP_001273342.1| - 1.6e-53 180.9 0.2 1.7e-53 180.7 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus CheW PF01584.14 gi|148642829|ref|YP_001273342.1| - 0.053 12.9 0.0 0.088 12.2 0.0 1.4 1 0 0 1 1 1 0 CheW-like domain ABC_tran PF00005.22 gi|148642830|ref|YP_001273343.1| - 5.4e-49 166.0 0.0 1.2e-25 90.4 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|148642830|ref|YP_001273343.1| - 9.5e-13 48.7 14.1 8.1e-05 22.7 0.1 4.3 2 2 2 4 4 4 3 AAA domain SMC_N PF02463.14 gi|148642830|ref|YP_001273343.1| - 7.4e-10 38.4 9.8 0.0019 17.4 0.3 4.0 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|148642830|ref|YP_001273343.1| - 8.3e-09 34.8 0.0 0.00088 18.4 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|148642830|ref|YP_001273343.1| - 3.5e-08 34.0 8.5 4.2e-05 23.9 1.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|148642830|ref|YP_001273343.1| - 3.4e-07 29.6 0.0 0.02 14.3 0.0 2.8 3 0 0 3 3 2 2 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|148642830|ref|YP_001273343.1| - 1.1e-06 28.8 3.6 0.017 15.2 0.1 3.7 2 1 1 3 3 3 2 AAA domain KaiC PF06745.8 gi|148642830|ref|YP_001273343.1| - 2.2e-06 26.9 0.7 0.073 12.1 0.0 3.5 4 0 0 4 4 3 2 KaiC UPF0079 PF02367.12 gi|148642830|ref|YP_001273343.1| - 2.7e-06 27.0 0.0 0.0014 18.2 0.0 2.7 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|148642830|ref|YP_001273343.1| - 8.5e-06 25.8 0.0 0.044 13.9 0.0 3.0 2 0 0 2 2 2 2 RNA helicase AAA_17 PF13207.1 gi|148642830|ref|YP_001273343.1| - 9.3e-06 26.4 3.6 0.069 13.9 0.2 3.2 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|148642830|ref|YP_001273343.1| - 1.1e-05 25.5 0.0 0.011 15.6 0.0 2.7 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|148642830|ref|YP_001273343.1| - 1.5e-05 24.7 4.7 0.17 11.7 0.1 4.6 3 2 0 3 3 3 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|148642830|ref|YP_001273343.1| - 2.1e-05 24.4 0.2 0.27 11.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|148642830|ref|YP_001273343.1| - 3.5e-05 23.2 0.0 0.11 11.9 0.0 2.9 3 0 0 3 3 3 2 AAA domain PRK PF00485.13 gi|148642830|ref|YP_001273343.1| - 5.3e-05 22.8 0.0 0.04 13.4 0.0 2.7 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family T2SE PF00437.15 gi|148642830|ref|YP_001273343.1| - 7.5e-05 21.7 0.0 0.15 10.9 0.0 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein Miro PF08477.8 gi|148642830|ref|YP_001273343.1| - 0.00017 22.0 0.0 0.15 12.5 0.0 2.8 2 0 0 2 2 2 1 Miro-like protein AAA_10 PF12846.2 gi|148642830|ref|YP_001273343.1| - 0.00022 20.7 1.1 0.13 11.7 0.1 2.7 2 1 0 2 2 2 1 AAA-like domain AAA_5 PF07728.9 gi|148642830|ref|YP_001273343.1| - 0.00024 20.8 0.1 0.45 10.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|148642830|ref|YP_001273343.1| - 0.00025 20.4 0.0 0.16 11.3 0.0 2.6 3 0 0 3 3 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|148642830|ref|YP_001273343.1| - 0.00027 20.1 0.1 0.068 12.3 0.0 2.9 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|148642830|ref|YP_001273343.1| - 0.00035 20.2 1.9 0.18 11.4 0.1 2.4 2 0 0 2 2 2 2 NACHT domain MobB PF03205.9 gi|148642830|ref|YP_001273343.1| - 0.00046 19.9 0.6 1.5 8.5 0.0 3.1 3 0 0 3 3 3 2 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|148642830|ref|YP_001273343.1| - 0.00059 19.3 1.9 0.021 14.2 0.0 2.8 3 0 0 3 3 2 1 Ethanolamine utilisation - propanediol utilisation Sigma54_activat PF00158.21 gi|148642830|ref|YP_001273343.1| - 0.00075 19.0 0.0 0.3 10.5 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.13 gi|148642830|ref|YP_001273343.1| - 0.00091 18.7 0.0 0.12 11.8 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family PhoH PF02562.11 gi|148642830|ref|YP_001273343.1| - 0.0013 18.0 0.1 1.7 7.7 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein MMR_HSR1 PF01926.18 gi|148642830|ref|YP_001273343.1| - 0.0019 18.1 0.1 0.08 12.9 0.0 2.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase NB-ARC PF00931.17 gi|148642830|ref|YP_001273343.1| - 0.002 17.0 0.0 0.3 9.8 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain AAA PF00004.24 gi|148642830|ref|YP_001273343.1| - 0.0021 18.2 0.3 0.23 11.6 0.0 3.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|148642830|ref|YP_001273343.1| - 0.0022 18.2 7.3 0.62 10.3 1.4 3.6 2 2 0 2 2 2 2 AAA domain Septin PF00735.13 gi|148642830|ref|YP_001273343.1| - 0.0023 16.9 0.4 0.54 9.2 0.0 2.4 2 0 0 2 2 2 1 Septin G-alpha PF00503.15 gi|148642830|ref|YP_001273343.1| - 0.0025 16.5 0.1 0.011 14.4 0.0 1.9 1 1 0 2 2 2 1 G-protein alpha subunit Zeta_toxin PF06414.7 gi|148642830|ref|YP_001273343.1| - 0.0034 16.4 0.0 0.12 11.4 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin Dynamin_N PF00350.18 gi|148642830|ref|YP_001273343.1| - 0.0038 17.0 0.1 0.017 14.9 0.0 2.0 2 0 0 2 2 2 1 Dynamin family Arch_ATPase PF01637.13 gi|148642830|ref|YP_001273343.1| - 0.021 14.5 2.3 0.6 9.7 0.0 3.1 2 1 1 3 3 3 0 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|148642830|ref|YP_001273343.1| - 0.022 14.7 0.0 9 6.3 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_14 PF13173.1 gi|148642830|ref|YP_001273343.1| - 0.026 14.4 3.9 7.6 6.4 0.0 4.0 3 2 0 3 3 3 0 AAA domain XPG_I PF00867.13 gi|148642830|ref|YP_001273343.1| - 0.028 14.4 0.2 0.38 10.8 0.0 2.8 3 0 0 3 3 2 0 XPG I-region AAA_24 PF13479.1 gi|148642830|ref|YP_001273343.1| - 0.035 13.6 0.6 12 5.3 0.0 2.9 3 0 0 3 3 3 0 AAA domain APS_kinase PF01583.15 gi|148642830|ref|YP_001273343.1| - 0.042 13.5 0.1 2.9 7.5 0.0 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase ABC_ATPase PF09818.4 gi|148642830|ref|YP_001273343.1| - 0.044 12.3 1.0 3.1 6.2 0.0 3.2 3 1 1 4 4 4 0 Predicted ATPase of the ABC class CPT PF07931.7 gi|148642830|ref|YP_001273343.1| - 0.045 13.3 0.2 1.4 8.5 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein SRP54 PF00448.17 gi|148642830|ref|YP_001273343.1| - 0.071 12.5 0.6 6.2 6.2 0.1 2.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain FeoB_N PF02421.13 gi|148642830|ref|YP_001273343.1| - 0.08 12.2 2.7 2.6 7.3 0.1 3.2 3 0 0 3 3 3 0 Ferrous iron transport protein B AAA_30 PF13604.1 gi|148642830|ref|YP_001273343.1| - 0.091 12.3 0.0 13 5.3 0.0 2.7 3 0 0 3 3 3 0 AAA domain ATP-synt_ab PF00006.20 gi|148642830|ref|YP_001273343.1| - 0.096 12.1 0.0 0.33 10.4 0.0 2.1 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_19 PF13245.1 gi|148642830|ref|YP_001273343.1| - 0.12 12.1 0.0 9.8 6.0 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain CbiQ PF02361.11 gi|148642831|ref|YP_001273344.1| - 4.3e-21 75.5 13.7 2.6e-19 69.6 9.5 2.1 1 1 0 1 1 1 1 Cobalt transport protein Trep_Strep PF09605.5 gi|148642832|ref|YP_001273345.1| - 6.5e-55 185.6 25.5 7.3e-55 185.5 17.7 1.0 1 0 0 1 1 1 1 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF1212 PF06738.7 gi|148642832|ref|YP_001273345.1| - 4.8 6.6 15.1 3.9 6.9 4.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1212) ABC_tran PF00005.22 gi|148642833|ref|YP_001273346.1| - 2.6e-30 105.5 0.0 5e-30 104.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|148642833|ref|YP_001273346.1| - 1.1e-13 51.2 14.1 1.7e-13 50.6 9.8 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|148642833|ref|YP_001273346.1| - 8.9e-10 38.1 2.8 3.3e-08 33.0 0.2 2.2 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|148642833|ref|YP_001273346.1| - 3.7e-05 23.8 8.6 0.00035 20.6 0.8 3.3 3 1 0 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|148642833|ref|YP_001273346.1| - 0.0032 18.2 0.1 0.01 16.6 0.0 2.0 2 1 0 2 2 1 1 AAA domain ABC_ATPase PF09818.4 gi|148642833|ref|YP_001273346.1| - 0.0042 15.7 0.1 0.02 13.4 0.0 2.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|148642833|ref|YP_001273346.1| - 0.0075 15.7 0.4 0.017 14.6 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|148642833|ref|YP_001273346.1| - 0.031 13.4 0.1 0.083 12.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|148642833|ref|YP_001273346.1| - 0.04 14.2 0.4 0.57 10.5 0.0 2.8 3 0 0 3 3 3 0 AAA domain ATP-synt_ab PF00006.20 gi|148642833|ref|YP_001273346.1| - 0.048 13.1 0.0 4.8 6.6 0.0 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|148642833|ref|YP_001273346.1| - 0.054 13.4 0.8 0.13 12.2 0.5 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|148642833|ref|YP_001273346.1| - 0.083 13.0 2.7 1.6 8.9 1.8 2.3 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|148642833|ref|YP_001273346.1| - 0.11 11.8 0.1 0.69 9.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|148642833|ref|YP_001273346.1| - 0.12 12.6 1.6 0.92 9.7 1.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|148642833|ref|YP_001273346.1| - 0.2 11.2 0.7 0.56 9.7 0.1 1.9 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|148642834|ref|YP_001273347.1| - 5.9e-31 107.5 0.1 1.1e-30 106.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|148642834|ref|YP_001273347.1| - 1.2e-12 47.8 13.7 1.2e-12 47.8 9.5 1.8 1 1 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|148642834|ref|YP_001273347.1| - 1.6e-07 30.7 2.0 1.4e-06 27.7 1.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|148642834|ref|YP_001273347.1| - 0.0011 19.2 0.3 0.02 15.0 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|148642834|ref|YP_001273347.1| - 0.0066 15.8 0.1 0.1 12.0 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein NB-ARC PF00931.17 gi|148642834|ref|YP_001273347.1| - 0.0087 14.9 0.0 0.45 9.3 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_21 PF13304.1 gi|148642834|ref|YP_001273347.1| - 0.017 15.1 2.4 0.73 9.7 1.6 2.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|148642834|ref|YP_001273347.1| - 0.032 13.8 0.2 0.077 12.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|148642834|ref|YP_001273347.1| - 0.036 13.6 0.0 0.094 12.2 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|148642834|ref|YP_001273347.1| - 0.043 12.9 0.0 0.082 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|148642834|ref|YP_001273347.1| - 0.06 14.1 1.6 0.1 13.3 0.3 2.1 2 1 0 2 2 1 0 AAA domain AAA_22 PF13401.1 gi|148642834|ref|YP_001273347.1| - 0.11 12.5 1.2 1.2 9.2 0.8 2.2 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|148642834|ref|YP_001273347.1| - 0.11 11.9 0.2 0.35 10.3 0.1 1.8 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_18 PF13238.1 gi|148642834|ref|YP_001273347.1| - 0.12 12.7 0.3 0.53 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|148642834|ref|YP_001273347.1| - 0.14 11.7 0.1 2.1 7.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|148642834|ref|YP_001273347.1| - 0.15 12.0 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain HTH_18 PF12833.2 gi|148642835|ref|YP_001273348.1| - 2.9e-19 68.9 0.0 4.7e-19 68.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.18 gi|148642835|ref|YP_001273348.1| - 2.2e-17 62.3 0.2 1e-08 34.7 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_7 PF02796.10 gi|148642835|ref|YP_001273348.1| - 1.3e-05 24.9 0.0 0.021 14.6 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|148642835|ref|YP_001273348.1| - 0.003 16.9 0.0 0.58 9.5 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_10 PF04967.7 gi|148642835|ref|YP_001273348.1| - 0.0045 16.5 0.1 0.017 14.7 0.0 2.0 3 0 0 3 3 3 1 HTH DNA binding domain HTH_Tnp_1_2 PF13022.1 gi|148642835|ref|YP_001273348.1| - 0.0087 15.8 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_Tnp_1 PF01527.15 gi|148642835|ref|YP_001273348.1| - 0.01 15.8 0.1 0.34 10.8 0.1 2.3 1 1 0 1 1 1 1 Transposase HTH_Mga PF08280.6 gi|148642835|ref|YP_001273348.1| - 0.026 14.2 0.4 0.1 12.3 0.2 2.1 2 0 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.1 gi|148642835|ref|YP_001273348.1| - 0.031 14.2 0.0 3.7 7.6 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_psq PF05225.11 gi|148642835|ref|YP_001273348.1| - 0.059 12.9 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Mga PF05043.8 gi|148642835|ref|YP_001273348.1| - 0.062 13.5 1.3 0.37 11.0 0.0 2.8 1 1 1 2 2 2 0 Mga helix-turn-helix domain HTH_23 PF13384.1 gi|148642835|ref|YP_001273348.1| - 0.071 12.7 0.1 4.2 7.1 0.0 2.8 2 1 1 3 3 3 0 Homeodomain-like domain HTH_11 PF08279.7 gi|148642835|ref|YP_001273348.1| - 0.074 12.7 0.0 0.2 11.3 0.0 1.7 1 0 0 1 1 1 0 HTH domain NUMOD1 PF07453.8 gi|148642835|ref|YP_001273348.1| - 0.082 12.7 0.3 0.85 9.5 0.0 2.8 3 0 0 3 3 3 0 NUMOD1 domain HTH_DeoR PF08220.7 gi|148642835|ref|YP_001273348.1| - 0.14 11.7 0.0 0.46 10.0 0.0 1.9 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain DUF2070 PF09843.4 gi|148642836|ref|YP_001273349.1| - 4.9e-52 176.0 1.7 7.9e-52 175.3 1.1 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF3054 PF11255.3 gi|148642837|ref|YP_001273350.1| - 0.022 14.6 2.0 0.036 13.9 0.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3054) Polysacc_synt_C PF14667.1 gi|148642837|ref|YP_001273350.1| - 0.12 12.1 4.7 0.15 11.8 3.2 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain Rab5ip PF07019.7 gi|148642837|ref|YP_001273350.1| - 0.28 11.3 9.1 0.48 10.5 6.3 1.3 1 1 0 1 1 1 0 Rab5-interacting protein (Rab5ip) Colicin_V PF02674.11 gi|148642837|ref|YP_001273350.1| - 0.32 10.8 8.1 1.4 8.7 5.6 1.8 1 1 0 1 1 1 0 Colicin V production protein FbpA PF05833.6 gi|148642838|ref|YP_001273351.1| - 1.9e-105 353.0 19.1 2.4e-105 352.6 13.3 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|148642838|ref|YP_001273351.1| - 1.6e-25 88.7 0.5 4.2e-25 87.4 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF814) DDT PF02791.12 gi|148642838|ref|YP_001273351.1| - 0.097 12.4 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 DDT domain Lactamase_B_3 PF13483.1 gi|148642839|ref|YP_001273352.1| - 3.7e-25 88.5 0.0 1.2e-24 86.8 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|148642839|ref|YP_001273352.1| - 2.2e-18 66.5 0.1 3.6e-18 65.8 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|148642839|ref|YP_001273352.1| - 3.1e-12 46.5 0.4 4.4e-12 46.0 0.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Corona_M PF01635.13 gi|148642840|ref|YP_001273353.1| - 0.18 10.7 2.9 0.36 9.7 2.0 1.4 1 0 0 1 1 1 0 Coronavirus M matrix/glycoprotein ATP1G1_PLM_MAT8 PF02038.11 gi|148642840|ref|YP_001273353.1| - 0.45 9.5 6.2 3 6.9 0.3 2.4 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family DUF3040 PF11239.3 gi|148642840|ref|YP_001273353.1| - 3 7.9 6.4 6.8 6.8 4.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Tetraspannin PF00335.15 gi|148642840|ref|YP_001273353.1| - 4.7 6.4 7.1 9.9 5.3 4.9 1.5 1 0 0 1 1 1 0 Tetraspanin family Class_IIIsignal PF04021.7 gi|148642841|ref|YP_001273354.1| - 1.1e-08 34.4 1.8 1.5e-08 34.0 1.3 1.2 1 0 0 1 1 1 1 Class III signal peptide Class_IIIsignal PF04021.7 gi|148642842|ref|YP_001273355.1| - 3.1e-07 29.8 4.0 4e-07 29.5 2.8 1.2 1 0 0 1 1 1 1 Class III signal peptide TarH PF02203.10 gi|148642842|ref|YP_001273355.1| - 0.036 13.8 0.2 0.041 13.7 0.1 1.0 1 0 0 1 1 1 0 Tar ligand binding domain homologue Baculo_11_kDa PF06143.6 gi|148642842|ref|YP_001273355.1| - 0.039 13.3 0.3 0.056 12.8 0.2 1.3 1 0 0 1 1 1 0 Baculovirus 11 kDa family Sugar_transport PF06800.7 gi|148642842|ref|YP_001273355.1| - 0.049 12.7 0.3 0.054 12.5 0.2 1.0 1 0 0 1 1 1 0 Sugar transport protein DUF2970 PF11174.3 gi|148642842|ref|YP_001273355.1| - 0.061 12.9 0.2 0.082 12.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2970) SdpI PF13630.1 gi|148642842|ref|YP_001273355.1| - 0.063 12.9 0.1 0.072 12.8 0.1 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF3139 PF11337.3 gi|148642842|ref|YP_001273355.1| - 0.087 13.1 0.5 0.11 12.7 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) DUF1449 PF07290.6 gi|148642842|ref|YP_001273355.1| - 0.093 12.0 0.1 0.098 11.9 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1449) TM_helix PF05552.7 gi|148642842|ref|YP_001273355.1| - 1.8 8.2 5.0 1.2 8.8 0.2 2.1 1 1 1 2 2 2 0 Conserved TM helix Fer4 PF00037.22 gi|148642843|ref|YP_001273356.1| - 3.6e-49 162.4 76.6 2e-08 33.4 2.8 8.6 8 1 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642843|ref|YP_001273356.1| - 6.3e-34 116.1 63.1 1.6e-09 38.0 6.8 5.4 4 1 2 6 6 6 6 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642843|ref|YP_001273356.1| - 9.4e-30 102.2 65.0 5.9e-10 38.8 4.9 6.3 6 0 0 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642843|ref|YP_001273356.1| - 8e-29 99.2 72.3 2.5e-07 30.3 8.7 7.2 3 2 5 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148642843|ref|YP_001273356.1| - 2.9e-28 96.4 81.9 4.3e-06 26.3 0.9 8.5 9 0 0 9 9 9 7 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148642843|ref|YP_001273356.1| - 7.6e-27 93.3 69.1 2.1e-07 31.1 8.1 6.2 4 3 4 8 8 8 8 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642843|ref|YP_001273356.1| - 3.2e-25 86.4 81.0 8.1e-06 25.4 1.6 8.6 9 0 0 9 9 8 7 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148642843|ref|YP_001273356.1| - 3.8e-25 88.4 60.5 3.1e-05 24.6 3.8 7.7 5 2 2 7 7 7 7 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|148642843|ref|YP_001273356.1| - 1.3e-23 82.7 68.9 6e-08 32.5 4.4 6.0 1 1 6 7 7 7 7 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642843|ref|YP_001273356.1| - 4.3e-16 59.0 66.7 4.6e-06 26.8 6.0 7.1 3 2 3 6 6 6 5 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148642843|ref|YP_001273356.1| - 4.5e-15 55.8 76.2 0.001 19.4 1.1 9.1 7 2 2 9 9 9 7 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148642843|ref|YP_001273356.1| - 9.2e-14 50.5 85.7 0.00083 19.5 2.9 8.6 9 0 0 9 9 8 6 4Fe-4S binding domain Fer4_3 PF12798.2 gi|148642843|ref|YP_001273356.1| - 1.1e-09 38.0 105.6 0.0051 17.2 4.0 8.6 9 0 0 9 9 8 7 4Fe-4S binding domain Fer4_15 PF13459.1 gi|148642843|ref|YP_001273356.1| - 6.3e-07 29.8 69.6 0.065 13.7 0.7 8.3 6 1 2 8 8 7 6 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|148642843|ref|YP_001273356.1| - 7.8e-07 29.3 73.8 0.12 12.7 2.2 8.3 8 0 0 8 8 8 6 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|148642843|ref|YP_001273356.1| - 0.00046 20.0 43.4 0.099 12.5 1.5 5.6 2 2 3 6 6 6 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148642844|ref|YP_001273357.1| - 5.4e-08 32.1 16.8 2.1e-06 27.0 2.7 3.5 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|148642844|ref|YP_001273357.1| - 5.6e-07 29.1 14.9 4.3e-05 23.2 3.6 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642844|ref|YP_001273357.1| - 2.4e-06 27.8 10.7 1.7e-05 25.1 6.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|148642844|ref|YP_001273357.1| - 3.7e-05 23.5 4.8 3.9e-05 23.4 3.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642844|ref|YP_001273357.1| - 5.7e-05 22.8 11.7 0.0001 22.0 8.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642844|ref|YP_001273357.1| - 0.00027 20.6 12.6 0.0068 16.2 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148642844|ref|YP_001273357.1| - 0.00041 21.0 11.5 0.0027 18.4 2.9 2.4 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|148642844|ref|YP_001273357.1| - 0.00063 19.9 12.7 0.0054 16.9 8.8 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642844|ref|YP_001273357.1| - 0.00071 19.3 13.2 0.0014 18.4 9.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148642844|ref|YP_001273357.1| - 0.0089 16.2 14.4 0.066 13.5 3.3 2.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|148642844|ref|YP_001273357.1| - 0.013 16.0 15.2 0.096 13.2 2.4 2.9 2 1 0 2 2 2 0 4Fe-4S binding domain Hormone_4 PF00220.12 gi|148642844|ref|YP_001273357.1| - 0.23 11.1 8.5 2.7 7.8 0.0 2.6 2 0 0 2 2 2 0 Neurohypophysial hormones, N-terminal Domain Fer4_17 PF13534.1 gi|148642844|ref|YP_001273357.1| - 0.43 10.9 11.1 1.9 8.8 2.1 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|148642844|ref|YP_001273357.1| - 5 7.7 13.6 1.2e+02 3.3 9.4 2.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|148642844|ref|YP_001273357.1| - 8.5 6.2 8.5 87 3.0 5.9 2.3 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_8 PF13183.1 gi|148642844|ref|YP_001273357.1| - 8.7 6.4 11.2 60 3.7 6.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain CTP_transf_2 PF01467.21 gi|148642845|ref|YP_001273358.1| - 6.2e-14 52.3 0.0 7.9e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|148642845|ref|YP_001273358.1| - 0.0052 16.4 0.3 0.0093 15.6 0.2 1.5 1 0 0 1 1 1 1 FAD synthetase DUF4399 PF14347.1 gi|148642846|ref|YP_001273359.1| - 2.4e-48 162.0 12.9 1.7e-12 47.1 0.1 7.7 4 1 3 7 7 7 7 Domain of unknown function (DUF4399) Big_1 PF02369.11 gi|148642846|ref|YP_001273359.1| - 7.4e-44 147.7 38.2 6.9e-10 38.7 1.2 8.6 6 2 2 8 8 8 8 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|148642846|ref|YP_001273359.1| - 3.3e-25 87.9 34.7 0.0024 17.8 0.1 8.6 8 0 0 8 8 8 8 Carboxypeptidase regulatory-like domain Transglut_core PF01841.14 gi|148642846|ref|YP_001273359.1| - 6.6e-24 84.3 0.2 1.8e-23 82.8 0.1 1.8 2 0 0 2 2 1 1 Transglutaminase-like superfamily PMBR PF09373.5 gi|148642846|ref|YP_001273359.1| - 5.5e-17 60.8 0.6 8.8e-06 25.4 0.0 5.1 5 0 0 5 5 5 3 Pseudomurein-binding repeat DUF4198 PF10670.4 gi|148642846|ref|YP_001273359.1| - 8.4e-15 55.3 7.5 0.023 14.7 0.0 6.8 8 0 0 8 8 8 3 Domain of unknown function (DUF4198) Lsr2 PF11774.3 gi|148642846|ref|YP_001273359.1| - 0.00068 19.5 1.7 4.5 7.2 0.0 5.9 6 0 0 6 6 6 1 Lsr2 Cupredoxin_1 PF13473.1 gi|148642846|ref|YP_001273359.1| - 0.00094 19.0 2.2 1.7 8.5 0.0 4.6 5 1 1 6 6 6 1 Cupredoxin-like domain Big_3_4 PF13754.1 gi|148642846|ref|YP_001273359.1| - 0.0046 17.2 2.8 0.0046 17.2 1.9 10.3 10 1 1 11 11 11 1 Bacterial Ig-like domain (group 3) YtkA PF13115.1 gi|148642846|ref|YP_001273359.1| - 0.0046 17.2 2.6 7.4 7.0 0.0 5.5 7 0 0 7 7 7 1 YtkA-like DUF824 PF05688.6 gi|148642846|ref|YP_001273359.1| - 0.0051 16.4 14.6 2.9 7.6 0.0 6.6 7 0 0 7 7 7 1 Salmonella repeat of unknown function (DUF824) YhzD PF14120.1 gi|148642846|ref|YP_001273359.1| - 0.34 10.8 0.9 1.2e+02 2.6 0.0 3.6 4 0 0 4 4 4 0 YhzD-like protein Radical_SAM PF04055.16 gi|148642847|ref|YP_001273360.1| - 2e-18 67.1 0.0 6.6e-18 65.4 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|148642847|ref|YP_001273360.1| - 1.4e-05 24.9 0.0 2.8e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain Aminotran_1_2 PF00155.16 gi|148642848|ref|YP_001273361.1| - 1.6e-71 241.1 0.2 1.8e-71 240.9 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|148642848|ref|YP_001273361.1| - 8.2e-09 34.6 0.1 1.3e-08 33.9 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|148642848|ref|YP_001273361.1| - 1.9e-08 33.7 0.0 3.1e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|148642848|ref|YP_001273361.1| - 4.8e-08 31.6 0.1 7.2e-08 31.1 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Cation_efflux PF01545.16 gi|148642849|ref|YP_001273362.1| - 8.3e-63 212.1 5.6 9.8e-63 211.8 3.9 1.0 1 0 0 1 1 1 1 Cation efflux family AMP-binding_C_2 PF14535.1 gi|148642849|ref|YP_001273362.1| - 0.069 13.1 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain DUF1980 PF09323.5 gi|148642849|ref|YP_001273362.1| - 0.13 11.9 3.4 0.2 11.3 2.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1980) DUF2104 PF09877.4 gi|148642849|ref|YP_001273362.1| - 0.29 11.1 6.1 2.2 8.2 0.2 2.8 2 1 1 3 3 3 0 Predicted membrane protein (DUF2104) Colicin_V PF02674.11 gi|148642849|ref|YP_001273362.1| - 0.41 10.4 7.6 1.4 8.7 1.5 2.4 2 0 0 2 2 2 0 Colicin V production protein CBS PF00571.23 gi|148642850|ref|YP_001273363.1| - 2e-31 107.4 5.0 4.8e-16 58.2 0.1 2.1 2 0 0 2 2 2 2 CBS domain H_kinase_N PF12282.3 gi|148642850|ref|YP_001273363.1| - 0.05 13.2 0.1 1.2 8.7 0.0 2.2 1 1 1 2 2 2 0 Signal transduction histidine kinase ATP-cone PF03477.11 gi|148642851|ref|YP_001273364.1| - 5.4e-09 36.3 0.4 1.9e-08 34.6 0.1 2.1 2 0 0 2 2 2 1 ATP cone domain AAA_17 PF13207.1 gi|148642851|ref|YP_001273364.1| - 3.8e-08 34.1 0.1 1.6e-07 32.1 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|148642851|ref|YP_001273364.1| - 7.9e-06 26.1 0.3 3.2e-05 24.2 0.1 2.1 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|148642851|ref|YP_001273364.1| - 8.3e-06 25.0 0.0 2.4e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 Zeta toxin Hpr_kinase_C PF07475.7 gi|148642851|ref|YP_001273364.1| - 0.025 13.8 0.1 0.061 12.6 0.1 1.6 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain Metallophos_2 PF12850.2 gi|148642852|ref|YP_001273365.1| - 5.3e-18 65.3 0.1 6.8e-18 64.9 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|148642852|ref|YP_001273365.1| - 6.6e-15 55.0 3.0 9.7e-15 54.4 2.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|148642852|ref|YP_001273365.1| - 1.1e-12 47.7 0.7 2e-07 30.4 0.0 2.8 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily DUF2096 PF09869.4 gi|148642853|ref|YP_001273366.1| - 5.9e-43 146.6 0.0 6.6e-43 146.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2096) DUF749 PF05370.6 gi|148642854|ref|YP_001273367.1| - 3.8e-30 103.6 0.1 4.2e-30 103.5 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF749) CCG PF02754.11 gi|148642855|ref|YP_001273368.1| - 4.4e-40 135.5 0.4 7.4e-19 67.5 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.1 gi|148642856|ref|YP_001273369.1| - 5.1e-10 39.5 9.9 1.1e-09 38.4 6.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148642856|ref|YP_001273369.1| - 1.1e-09 38.1 10.6 2.3e-09 37.1 7.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148642856|ref|YP_001273369.1| - 7.1e-07 29.3 10.2 2.5e-06 27.6 7.1 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642856|ref|YP_001273369.1| - 0.00012 21.8 11.1 0.00035 20.3 7.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148642856|ref|YP_001273369.1| - 0.00018 21.7 10.1 0.00044 20.5 7.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148642856|ref|YP_001273369.1| - 0.0026 18.1 11.8 0.088 13.2 1.5 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642856|ref|YP_001273369.1| - 0.021 14.7 10.1 0.42 10.6 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|148642856|ref|YP_001273369.1| - 0.065 12.8 7.0 0.28 10.8 1.2 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.1 gi|148642856|ref|YP_001273369.1| - 0.092 12.6 9.2 0.24 11.2 6.4 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148642856|ref|YP_001273369.1| - 1.2 8.8 14.4 2.1 8.0 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148642856|ref|YP_001273369.1| - 8.5 7.2 16.6 13 6.5 2.7 3.1 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain TGT PF01702.13 gi|148642857|ref|YP_001273370.1| - 3.6e-11 42.8 0.5 7.9e-09 35.1 0.0 2.0 1 1 1 2 2 2 2 Queuine tRNA-ribosyltransferase Borrelia_orfD PF02999.9 gi|148642857|ref|YP_001273370.1| - 0.088 12.9 4.8 0.055 13.5 1.2 2.0 2 1 0 2 2 2 0 Borrelia orf-D family DUF1878 PF08963.5 gi|148642857|ref|YP_001273370.1| - 0.11 12.6 0.2 0.11 12.6 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1878) DUF883 PF05957.8 gi|148642859|ref|YP_001273372.1| - 0.33 11.3 1.6 3 8.3 0.1 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) tRNA-synt_His PF13393.1 gi|148642859|ref|YP_001273372.1| - 0.48 9.4 2.7 0.46 9.4 1.0 1.5 1 1 0 1 1 1 0 Histidyl-tRNA synthetase IncA PF04156.9 gi|148642859|ref|YP_001273372.1| - 2 7.9 17.7 0.84 9.1 7.0 2.3 1 1 1 2 2 2 0 IncA protein DUF2779 PF11074.3 gi|148642859|ref|YP_001273372.1| - 4.6 7.2 12.1 10 6.1 7.8 2.2 1 1 1 2 2 2 0 Domain of unknown function(DUF2779) Pox_A_type_inc PF04508.7 gi|148642859|ref|YP_001273372.1| - 5.6 7.0 20.6 0.49 10.3 1.1 5.9 5 1 0 5 5 5 0 Viral A-type inclusion protein repeat RHH_3 PF12651.2 gi|148642860|ref|YP_001273373.1| - 0.074 12.7 0.5 2.7 7.7 0.1 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix domain TP_methylase PF00590.15 gi|148642861|ref|YP_001273374.1| - 2.2e-19 69.9 0.0 2.5e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Leu_zip PF15294.1 gi|148642861|ref|YP_001273374.1| - 0.0034 16.5 0.3 0.0051 15.9 0.2 1.2 1 0 0 1 1 1 1 Leucine zipper DUF3227 PF11537.3 gi|148642861|ref|YP_001273374.1| - 0.27 11.3 1.4 0.62 10.1 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3227) Met_10 PF02475.11 gi|148642862|ref|YP_001273375.1| - 5.4e-63 212.2 2.8 8.3e-63 211.6 2.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|148642862|ref|YP_001273375.1| - 6.8e-15 54.9 2.4 2.3e-14 53.2 0.3 2.2 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|148642862|ref|YP_001273375.1| - 9.7e-13 47.8 0.2 2.5e-12 46.5 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|148642862|ref|YP_001273375.1| - 3.4e-10 40.4 0.0 1.1e-09 38.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|148642862|ref|YP_001273375.1| - 3.8e-10 39.8 0.0 5.8e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|148642862|ref|YP_001273375.1| - 6.8e-08 31.8 0.4 1.9e-07 30.3 0.3 1.8 1 0 0 1 1 1 1 Putative methyltransferase PrmA PF06325.8 gi|148642862|ref|YP_001273375.1| - 8.1e-08 31.7 1.1 1.4e-07 30.9 0.8 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) tRNA_U5-meth_tr PF05958.6 gi|148642862|ref|YP_001273375.1| - 1.4e-06 27.2 0.3 2.5e-06 26.4 0.2 1.4 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.12 gi|148642862|ref|YP_001273375.1| - 2.2e-06 27.0 1.3 0.00012 21.2 0.1 2.4 2 0 0 2 2 2 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.5 gi|148642862|ref|YP_001273375.1| - 3.1e-06 26.8 0.4 6.8e-06 25.7 0.2 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.9 gi|148642862|ref|YP_001273375.1| - 3.4e-06 26.3 0.5 8.7e-06 25.0 0.1 1.9 2 0 0 2 2 2 1 Tellurite resistance protein TehB TRM PF02005.11 gi|148642862|ref|YP_001273375.1| - 6.7e-06 25.2 0.2 9.8e-06 24.7 0.2 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_25 PF13649.1 gi|148642862|ref|YP_001273375.1| - 7.8e-06 26.1 0.0 1.8e-05 24.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|148642862|ref|YP_001273375.1| - 1.1e-05 25.8 0.6 0.0013 19.2 0.0 3.0 3 0 0 3 3 3 1 Methyltransferase domain GidB PF02527.10 gi|148642862|ref|YP_001273375.1| - 0.0001 21.5 0.1 0.0002 20.5 0.1 1.5 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G FmrO PF07091.6 gi|148642862|ref|YP_001273375.1| - 0.00016 20.7 0.0 0.00029 19.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_23 PF13489.1 gi|148642862|ref|YP_001273375.1| - 0.00037 20.2 0.0 0.00064 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|148642862|ref|YP_001273375.1| - 0.00064 20.1 0.0 0.0022 18.4 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|148642862|ref|YP_001273375.1| - 0.00066 19.2 0.0 0.0014 18.2 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|148642862|ref|YP_001273375.1| - 0.0015 17.9 0.0 0.0033 16.8 0.0 1.7 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Nol1_Nop2_Fmu PF01189.12 gi|148642862|ref|YP_001273375.1| - 0.0048 16.3 0.0 0.0096 15.3 0.0 1.4 1 0 0 1 1 1 1 NOL1/NOP2/sun family RRM_1 PF00076.17 gi|148642862|ref|YP_001273375.1| - 0.007 15.9 0.2 0.041 13.5 0.0 2.3 2 0 0 2 2 2 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Ubie_methyltran PF01209.13 gi|148642862|ref|YP_001273375.1| - 0.0082 15.2 0.2 0.024 13.7 0.0 1.8 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family DUF2114 PF09887.4 gi|148642862|ref|YP_001273375.1| - 0.012 13.9 3.2 0.021 13.2 0.2 2.0 1 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2114) PRMT5 PF05185.11 gi|148642862|ref|YP_001273375.1| - 0.015 14.2 0.3 0.024 13.5 0.2 1.3 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase HN PF00423.14 gi|148642862|ref|YP_001273375.1| - 0.022 13.0 0.3 0.026 12.8 0.2 1.3 1 0 0 1 1 1 0 Haemagglutinin-neuraminidase DUF4116 PF13475.1 gi|148642862|ref|YP_001273375.1| - 0.024 14.0 3.6 1.6 8.2 0.5 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4116) CMAS PF02353.15 gi|148642862|ref|YP_001273375.1| - 0.027 13.5 0.0 0.056 12.5 0.0 1.5 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Abi PF02517.11 gi|148642863|ref|YP_001273376.1| - 3.2e-18 65.6 8.2 3.2e-18 65.6 5.7 2.3 2 1 0 2 2 2 1 CAAX protease self-immunity IF-2B PF01008.12 gi|148642864|ref|YP_001273377.1| - 1.3e-75 254.0 0.0 2.1e-75 253.3 0.0 1.3 1 0 0 1 1 1 1 Initiation factor 2 subunit family ABC_tran PF00005.22 gi|148642865|ref|YP_001273378.1| - 2.4e-32 112.0 0.0 5.1e-32 111.0 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|148642865|ref|YP_001273378.1| - 6.2e-17 62.4 0.2 1.8e-09 38.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|148642865|ref|YP_001273378.1| - 2.8e-09 36.5 0.3 8.2e-05 21.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|148642865|ref|YP_001273378.1| - 6.5e-08 32.0 0.9 0.0031 16.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|148642865|ref|YP_001273378.1| - 6.7e-08 33.0 0.2 8.4e-08 32.7 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|148642865|ref|YP_001273378.1| - 1.5e-06 28.3 0.0 2.1e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|148642865|ref|YP_001273378.1| - 4e-05 22.3 0.3 0.61 8.5 0.0 3.0 3 0 0 3 3 3 2 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|148642865|ref|YP_001273378.1| - 4.7e-05 22.8 0.1 8.7e-05 21.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|148642865|ref|YP_001273378.1| - 5.9e-05 23.2 0.0 0.00013 22.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|148642865|ref|YP_001273378.1| - 0.00013 20.5 0.1 0.034 12.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|148642865|ref|YP_001273378.1| - 0.0002 20.9 0.6 0.007 15.8 0.2 2.5 1 1 1 3 3 3 1 AAA-like domain DUF258 PF03193.11 gi|148642865|ref|YP_001273378.1| - 0.0002 20.5 0.1 0.00034 19.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|148642865|ref|YP_001273378.1| - 0.00068 19.5 0.0 0.029 14.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|148642865|ref|YP_001273378.1| - 0.00085 20.1 1.1 0.0034 18.1 0.8 2.3 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|148642865|ref|YP_001273378.1| - 0.0022 17.4 0.1 0.018 14.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|148642865|ref|YP_001273378.1| - 0.0031 17.2 0.0 0.0095 15.6 0.0 1.9 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|148642865|ref|YP_001273378.1| - 0.0091 16.2 1.0 0.097 12.8 0.3 2.5 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|148642865|ref|YP_001273378.1| - 0.0095 15.8 0.8 0.092 12.6 0.1 2.4 2 1 0 2 2 1 1 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|148642865|ref|YP_001273378.1| - 0.01 15.7 0.1 0.016 15.1 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|148642865|ref|YP_001273378.1| - 0.013 15.2 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.17 gi|148642865|ref|YP_001273378.1| - 0.017 13.9 0.0 0.023 13.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|148642865|ref|YP_001273378.1| - 0.017 15.3 0.4 0.047 14.0 0.2 1.9 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|148642865|ref|YP_001273378.1| - 0.023 14.5 0.2 0.036 13.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|148642865|ref|YP_001273378.1| - 0.034 13.5 0.2 0.29 10.5 0.0 2.2 2 1 0 2 2 2 0 IstB-like ATP binding protein MobB PF03205.9 gi|148642865|ref|YP_001273378.1| - 0.035 13.8 0.3 0.1 12.2 0.1 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MutS_V PF00488.16 gi|148642865|ref|YP_001273378.1| - 0.036 13.4 0.1 0.082 12.2 0.0 1.6 2 0 0 2 2 1 0 MutS domain V AAA_5 PF07728.9 gi|148642865|ref|YP_001273378.1| - 0.036 13.7 0.1 0.39 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|148642865|ref|YP_001273378.1| - 0.054 12.3 0.0 0.081 11.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.1 gi|148642865|ref|YP_001273378.1| - 0.054 13.2 0.0 0.18 11.5 0.0 1.7 2 0 0 2 2 2 0 Part of AAA domain Rad17 PF03215.10 gi|148642865|ref|YP_001273378.1| - 0.065 11.9 0.2 0.1 11.2 0.1 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Miro PF08477.8 gi|148642865|ref|YP_001273378.1| - 0.091 13.2 0.0 0.19 12.2 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|148642865|ref|YP_001273378.1| - 0.1 12.1 0.0 0.3 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|148642865|ref|YP_001273378.1| - 0.1 12.1 0.1 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ArgK PF03308.11 gi|148642865|ref|YP_001273378.1| - 0.11 11.2 0.0 0.18 10.5 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Mg_chelatase PF01078.16 gi|148642865|ref|YP_001273378.1| - 0.11 11.5 0.0 0.39 9.8 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|148642865|ref|YP_001273378.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_28 PF13521.1 gi|148642865|ref|YP_001273378.1| - 0.27 11.2 1.2 0.97 9.3 0.3 2.1 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|148642866|ref|YP_001273379.1| - 1.9e-21 76.4 13.5 2.5e-21 76.0 9.4 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.15 gi|148642867|ref|YP_001273380.1| - 2.8e-56 190.2 1.1 3.2e-56 190.0 0.8 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.2 gi|148642867|ref|YP_001273380.1| - 3.1e-06 26.7 0.4 4.9e-06 26.0 0.3 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|148642867|ref|YP_001273380.1| - 0.0002 21.0 0.8 0.00065 19.3 0.3 1.9 2 0 0 2 2 2 1 NMT1/THI5 like Eno-Rase_FAD_bd PF07055.7 gi|148642867|ref|YP_001273380.1| - 0.1 12.5 1.0 2.4 8.1 0.0 2.8 3 0 0 3 3 3 0 Enoyl reductase FAD binding domain Radical_SAM PF04055.16 gi|148642868|ref|YP_001273381.1| - 7.4e-18 65.2 0.0 1.2e-17 64.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily CoA_binding_2 PF13380.1 gi|148642868|ref|YP_001273381.1| - 0.037 14.2 0.1 1.4 9.1 0.0 2.7 1 1 2 3 3 3 0 CoA binding domain DUF2113 PF09886.4 gi|148642869|ref|YP_001273382.1| - 2.3e-67 225.8 0.7 2.5e-67 225.6 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.15 gi|148642870|ref|YP_001273383.1| - 4.2e-58 196.7 5.3 5.7e-58 196.3 3.6 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family DUF955 PF06114.8 gi|148642870|ref|YP_001273383.1| - 0.043 13.5 0.0 0.097 12.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF955) Hydantoinase_A PF01968.13 gi|148642870|ref|YP_001273383.1| - 0.088 11.8 7.0 0.77 8.8 0.2 3.1 2 1 1 3 3 3 0 Hydantoinase/oxoprolinase FtsA PF14450.1 gi|148642870|ref|YP_001273383.1| - 0.09 12.6 1.8 8.1 6.3 0.3 2.7 2 1 0 2 2 2 0 Cell division protein FtsA MutL PF13941.1 gi|148642870|ref|YP_001273383.1| - 0.11 10.7 6.9 0.034 12.4 0.3 2.4 2 1 0 3 3 3 0 MutL protein Hydant_A_N PF05378.8 gi|148642870|ref|YP_001273383.1| - 0.44 10.0 6.1 0.3 10.5 1.9 2.4 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region DUF2112 PF09885.4 gi|148642871|ref|YP_001273384.1| - 2.4e-67 225.0 0.0 2.7e-67 224.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.4 gi|148642872|ref|YP_001273385.1| - 4.9e-41 138.4 0.0 6.2e-41 138.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Pro_isomerase PF00160.16 gi|148642873|ref|YP_001273386.1| - 0.0038 17.4 1.3 0.094 12.9 0.0 3.4 4 1 0 4 4 4 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Cyclophil_like PF04126.8 gi|148642873|ref|YP_001273386.1| - 0.033 13.7 0.4 5.1 6.7 0.0 3.8 5 0 0 5 5 5 0 Cyclophilin-like AIRS PF00586.19 gi|148642874|ref|YP_001273387.1| - 3.6e-20 72.0 0.7 6.2e-20 71.2 0.5 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|148642874|ref|YP_001273387.1| - 1.6e-15 57.4 0.0 2.6e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain DUF2117 PF09890.4 gi|148642875|ref|YP_001273388.1| - 5.5e-82 274.1 5.7 8.6e-82 273.4 3.9 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.16 gi|148642875|ref|YP_001273388.1| - 0.0022 16.8 0.1 0.0037 16.0 0.1 1.3 1 0 0 1 1 1 1 ATP-NAD kinase Zn-ribbon_8 PF09723.5 gi|148642876|ref|YP_001273389.1| - 0.1 12.5 2.5 0.17 11.8 1.7 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DUF1724 PF08350.5 gi|148642877|ref|YP_001273390.1| - 1.5e-11 43.6 0.1 6.8e-11 41.5 0.0 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF1724) HTH_34 PF13601.1 gi|148642877|ref|YP_001273390.1| - 4.8e-06 26.5 1.6 1.2e-05 25.2 0.4 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|148642877|ref|YP_001273390.1| - 1.3e-05 24.7 0.2 2.2e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|148642877|ref|YP_001273390.1| - 5.4e-05 22.9 7.5 5.4e-05 22.9 5.2 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|148642877|ref|YP_001273390.1| - 5.8e-05 22.3 1.0 0.00012 21.4 0.7 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|148642877|ref|YP_001273390.1| - 0.00099 18.7 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|148642877|ref|YP_001273390.1| - 0.0066 16.7 0.1 0.014 15.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|148642877|ref|YP_001273390.1| - 0.013 15.0 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|148642877|ref|YP_001273390.1| - 0.015 14.9 0.2 0.032 13.9 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|148642877|ref|YP_001273390.1| - 0.017 14.8 0.8 0.04 13.6 0.3 1.7 2 0 0 2 2 2 0 MarR family DUF2089 PF09862.4 gi|148642877|ref|YP_001273390.1| - 0.022 14.5 0.4 0.1 12.4 0.1 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2089) HTH_20 PF12840.2 gi|148642877|ref|YP_001273390.1| - 0.024 14.4 0.0 0.049 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Ssl1 PF04056.9 gi|148642877|ref|YP_001273390.1| - 0.031 13.8 2.2 0.25 10.9 0.1 2.6 1 1 1 3 3 3 0 Ssl1-like Sulfolobus_pRN PF05584.6 gi|148642877|ref|YP_001273390.1| - 0.052 13.5 0.9 0.18 11.7 0.7 2.0 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HxlR PF01638.12 gi|148642877|ref|YP_001273390.1| - 0.067 12.8 0.5 0.16 11.6 0.3 1.7 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_Crp_2 PF13545.1 gi|148642877|ref|YP_001273390.1| - 0.073 12.8 0.1 0.14 12.0 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain CUE PF02845.11 gi|148642877|ref|YP_001273390.1| - 0.073 12.5 0.1 0.21 11.0 0.1 1.9 1 1 0 1 1 1 0 CUE domain Rrf2 PF02082.15 gi|148642877|ref|YP_001273390.1| - 0.085 12.9 0.3 0.18 11.9 0.2 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR PF03551.9 gi|148642877|ref|YP_001273390.1| - 0.17 11.6 1.7 0.31 10.8 0.7 1.9 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family ArsC PF03960.10 gi|148642877|ref|YP_001273390.1| - 0.45 10.6 6.3 0.16 12.0 0.7 2.6 2 1 1 3 3 3 0 ArsC family S-AdoMet_synt_M PF02772.11 gi|148642877|ref|YP_001273390.1| - 1 9.3 4.6 0.76 9.7 0.9 2.3 1 1 1 2 2 2 0 S-adenosylmethionine synthetase, central domain DUF1724 PF08350.5 gi|148642878|ref|YP_001273391.1| - 2.3e-10 39.8 0.5 8.1e-10 38.0 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) Leuk-A4-hydro_C PF09127.6 gi|148642878|ref|YP_001273391.1| - 0.02 14.4 2.5 0.34 10.4 0.0 2.8 2 2 0 2 2 2 0 Leukotriene A4 hydrolase, C-terminal HTH_5 PF01022.15 gi|148642879|ref|YP_001273392.1| - 5.1e-05 22.8 0.1 7.7e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|148642879|ref|YP_001273392.1| - 0.018 14.7 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|148642879|ref|YP_001273392.1| - 0.019 14.7 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|148642879|ref|YP_001273392.1| - 0.023 14.5 0.0 0.045 13.5 0.0 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2513 PF10711.4 gi|148642879|ref|YP_001273392.1| - 0.098 12.7 0.1 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) MoCF_biosynth PF00994.19 gi|148642880|ref|YP_001273393.1| - 1.2e-29 102.5 0.3 1.5e-29 102.2 0.2 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain YtkA PF13115.1 gi|148642880|ref|YP_001273393.1| - 0.13 12.6 0.1 0.4 11.0 0.0 1.8 1 1 0 1 1 1 0 YtkA-like Pribosyltran PF00156.22 gi|148642881|ref|YP_001273394.1| - 3.3e-19 68.8 2.8 1.7e-18 66.5 1.9 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|148642881|ref|YP_001273394.1| - 0.0023 17.1 0.0 0.0032 16.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRC PF05239.11 gi|148642882|ref|YP_001273395.1| - 2.4e-09 36.9 8.1 2.9e-09 36.6 5.6 1.1 1 0 0 1 1 1 1 PRC-barrel domain PPDK_N PF01326.14 gi|148642883|ref|YP_001273396.1| - 3.4e-52 177.5 0.0 5.9e-52 176.7 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Acetyltransf_1 PF00583.19 gi|148642884|ref|YP_001273397.1| - 1e-19 70.3 0.0 1.3e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|148642884|ref|YP_001273397.1| - 3.6e-13 49.6 0.0 4.5e-13 49.3 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|148642884|ref|YP_001273397.1| - 1.3e-12 47.6 0.1 1.9e-12 47.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|148642884|ref|YP_001273397.1| - 9.2e-09 35.4 0.3 1.2e-08 35.0 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|148642884|ref|YP_001273397.1| - 2.9e-06 27.2 0.0 4e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|148642884|ref|YP_001273397.1| - 2.3e-05 24.5 0.0 2.6e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|148642884|ref|YP_001273397.1| - 0.00018 21.1 0.0 0.00044 19.9 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|148642884|ref|YP_001273397.1| - 0.0054 16.5 0.0 0.0077 16.0 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|148642884|ref|YP_001273397.1| - 0.0089 15.8 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|148642884|ref|YP_001273397.1| - 0.042 13.4 0.0 0.076 12.6 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|148642884|ref|YP_001273397.1| - 0.14 12.1 0.0 0.64 9.9 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain CbiZ PF01955.13 gi|148642885|ref|YP_001273398.1| - 4.9e-54 183.0 0.4 7.4e-54 182.4 0.3 1.3 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Cpn60_TCP1 PF00118.19 gi|148642886|ref|YP_001273399.1| - 4.9e-166 553.1 18.8 6.1e-166 552.7 13.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Cyclase PF04199.8 gi|148642887|ref|YP_001273400.1| - 3.1e-25 88.8 0.0 4.9e-25 88.1 0.0 1.3 1 0 0 1 1 1 1 Putative cyclase DUF3132 PF11330.3 gi|148642887|ref|YP_001273400.1| - 0.12 12.2 0.1 0.23 11.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3132) MerR-DNA-bind PF09278.6 gi|148642888|ref|YP_001273401.1| - 0.11 12.9 0.1 0.11 12.9 0.1 4.0 5 0 0 5 5 5 0 MerR, DNA binding Pox_A_type_inc PF04508.7 gi|148642888|ref|YP_001273401.1| - 0.11 12.3 0.6 0.11 12.3 0.4 6.7 8 0 0 8 8 8 0 Viral A-type inclusion protein repeat Reo_sigmaC PF04582.7 gi|148642888|ref|YP_001273401.1| - 0.23 10.5 3.3 0.25 10.4 1.1 1.9 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Lge1 PF11488.3 gi|148642888|ref|YP_001273401.1| - 6.4 7.0 22.6 6.1 7.1 2.1 5.2 1 1 3 4 4 4 0 Transcriptional regulatory protein LGE1 IncA PF04156.9 gi|148642888|ref|YP_001273401.1| - 9.9 5.7 41.2 4.4 6.8 8.8 3.3 1 1 2 3 3 3 0 IncA protein Semialdhyde_dhC PF02774.13 gi|148642889|ref|YP_001273402.1| - 5.9e-45 153.3 0.0 8.5e-45 152.8 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|148642889|ref|YP_001273402.1| - 1.4e-34 118.9 0.0 2.9e-34 117.9 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|148642889|ref|YP_001273402.1| - 7.7e-05 22.6 0.1 0.00016 21.5 0.1 1.7 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|148642889|ref|YP_001273402.1| - 0.00012 22.6 0.0 0.0013 19.3 0.0 2.4 3 0 0 3 3 3 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase GFO_IDH_MocA PF01408.17 gi|148642889|ref|YP_001273402.1| - 0.00036 21.0 0.0 0.00084 19.8 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.15 gi|148642889|ref|YP_001273402.1| - 0.00075 18.9 0.5 0.0029 17.0 0.0 2.1 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Saccharop_dh PF03435.13 gi|148642889|ref|YP_001273402.1| - 0.0046 15.9 0.0 0.0065 15.4 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|148642889|ref|YP_001273402.1| - 0.011 15.7 0.1 0.025 14.6 0.1 1.7 1 1 0 1 1 1 0 NADH(P)-binding Epimerase PF01370.16 gi|148642889|ref|YP_001273402.1| - 0.095 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|148642889|ref|YP_001273402.1| - 0.1 11.5 0.0 0.17 10.7 0.0 1.4 1 0 0 1 1 1 0 Male sterility protein DapB_C PF05173.9 gi|148642890|ref|YP_001273403.1| - 6.9e-44 148.8 0.1 1.3e-43 147.9 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|148642890|ref|YP_001273403.1| - 6.7e-32 110.0 6.7 6.7e-32 110.0 4.6 2.2 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|148642890|ref|YP_001273403.1| - 3.8e-06 27.1 4.7 0.00019 21.7 0.8 3.0 2 1 1 3 3 3 2 Semialdehyde dehydrogenase, NAD binding domain Ribosomal_L1 PF00687.16 gi|148642890|ref|YP_001273403.1| - 0.00049 19.5 1.7 0.0062 15.9 0.3 2.2 1 1 1 2 2 2 1 Ribosomal protein L1p/L10e family Saccharop_dh PF03435.13 gi|148642890|ref|YP_001273403.1| - 0.0016 17.4 3.0 0.0024 16.8 2.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_3 PF03447.11 gi|148642890|ref|YP_001273403.1| - 0.0036 17.7 1.6 0.0071 16.7 1.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|148642890|ref|YP_001273403.1| - 0.0073 16.2 6.9 0.039 13.9 3.4 2.7 1 1 1 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Ldh_1_N PF00056.18 gi|148642890|ref|YP_001273403.1| - 0.011 15.6 2.9 0.011 15.6 2.0 2.6 2 1 1 3 3 3 0 lactate/malate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|148642890|ref|YP_001273403.1| - 0.015 15.8 1.7 0.037 14.5 1.1 1.8 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold UPF0278 PF08745.6 gi|148642890|ref|YP_001273403.1| - 0.042 13.1 0.4 0.21 10.8 0.0 2.0 2 0 0 2 2 2 0 UPF0278 family NAD_binding_10 PF13460.1 gi|148642890|ref|YP_001273403.1| - 0.043 13.8 3.5 0.084 12.8 2.5 1.5 1 0 0 1 1 1 0 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|148642890|ref|YP_001273403.1| - 0.12 11.2 0.8 0.22 10.3 0.6 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain CoA_binding_2 PF13380.1 gi|148642890|ref|YP_001273403.1| - 0.14 12.3 0.7 0.27 11.3 0.5 1.6 1 1 0 1 1 1 0 CoA binding domain 3Beta_HSD PF01073.14 gi|148642890|ref|YP_001273403.1| - 0.3 9.7 4.3 0.69 8.5 3.0 1.7 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.16 gi|148642890|ref|YP_001273403.1| - 1.3 8.3 4.1 0.43 9.9 0.3 2.0 2 1 1 3 3 3 0 NAD dependent epimerase/dehydratase family DHDPS PF00701.17 gi|148642891|ref|YP_001273404.1| - 9.8e-96 319.7 0.5 1.1e-95 319.5 0.4 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family YbjQ_1 PF01906.12 gi|148642891|ref|YP_001273404.1| - 0.033 14.6 0.0 0.073 13.5 0.0 1.6 1 0 0 1 1 1 0 Putative heavy-metal-binding Bac_luciferase PF00296.15 gi|148642891|ref|YP_001273404.1| - 0.11 11.5 0.0 0.32 10.0 0.0 1.7 2 0 0 2 2 2 0 Luciferase-like monooxygenase AA_kinase PF00696.23 gi|148642892|ref|YP_001273405.1| - 1.8e-47 161.9 1.1 8e-47 159.8 0.7 1.8 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|148642892|ref|YP_001273405.1| - 1.5e-23 82.0 0.5 1.8e-11 43.3 0.0 2.4 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|148642892|ref|YP_001273405.1| - 1.6e-10 40.2 0.5 8.7e-06 25.1 0.0 2.9 3 0 0 3 3 3 2 ACT domain ACT_4 PF13291.1 gi|148642892|ref|YP_001273405.1| - 8.6e-06 26.0 0.6 0.065 13.5 0.1 2.5 2 0 0 2 2 2 2 ACT domain DUF2007 PF09413.5 gi|148642892|ref|YP_001273405.1| - 0.00023 20.9 0.0 0.59 9.9 0.0 2.7 2 0 0 2 2 2 2 Domain of unknown function (DUF2007) ACT_6 PF13740.1 gi|148642892|ref|YP_001273405.1| - 0.0019 17.9 0.2 2.9 7.6 0.0 2.7 2 0 0 2 2 2 2 ACT domain Ribosomal_S17e PF00833.13 gi|148642893|ref|YP_001273406.1| - 3.5e-21 75.1 0.7 3.7e-21 75.1 0.5 1.0 1 0 0 1 1 1 1 Ribosomal S17 CM_2 PF01817.16 gi|148642894|ref|YP_001273407.1| - 4.2e-16 58.7 0.9 5.7e-16 58.3 0.6 1.2 1 0 0 1 1 1 1 Chorismate mutase type II PhoU PF01895.14 gi|148642894|ref|YP_001273407.1| - 1.8 9.0 6.7 0.69 10.3 1.0 2.1 1 1 1 2 2 2 0 PhoU domain GHMP_kinases_N PF00288.21 gi|148642895|ref|YP_001273408.1| - 3.6e-11 42.9 0.4 3.6e-11 42.9 0.3 3.0 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|148642895|ref|YP_001273408.1| - 0.00041 20.4 0.1 0.0011 19.0 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal Glycos_transf_1 PF00534.15 gi|148642896|ref|YP_001273409.1| - 1.8e-44 151.1 0.1 4.3e-44 149.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|148642896|ref|YP_001273409.1| - 4.3e-20 72.2 0.0 1.1e-19 70.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|148642896|ref|YP_001273409.1| - 6.8e-20 71.5 0.0 1e-19 70.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|148642896|ref|YP_001273409.1| - 2.1e-19 69.7 1.6 4.3e-19 68.7 1.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|148642896|ref|YP_001273409.1| - 7.8e-15 55.3 0.0 1.1e-14 54.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|148642896|ref|YP_001273409.1| - 1.1e-10 41.6 0.0 2.5e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|148642896|ref|YP_001273409.1| - 3.4e-06 26.7 0.7 0.00023 20.7 0.2 3.0 2 1 1 3 3 3 1 Starch synthase catalytic domain Pox_RNA_Pol_19 PF05320.7 gi|148642896|ref|YP_001273409.1| - 0.057 13.1 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 Poxvirus DNA-directed RNA polymerase 19 kDa subunit CbiD PF01888.12 gi|148642897|ref|YP_001273410.1| - 6.2e-92 307.2 3.6 7.9e-92 306.9 2.5 1.1 1 0 0 1 1 1 1 CbiD Thioredoxin_3 PF13192.1 gi|148642898|ref|YP_001273411.1| - 2e-15 56.3 1.1 2.5e-15 56.0 0.7 1.1 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|148642898|ref|YP_001273411.1| - 2.5e-07 30.5 0.0 4e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin DSBA PF01323.15 gi|148642898|ref|YP_001273411.1| - 1.2e-05 24.9 0.2 0.00096 18.7 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin PF00085.15 gi|148642898|ref|YP_001273411.1| - 4.4e-05 23.1 0.1 5.1e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.1 gi|148642898|ref|YP_001273411.1| - 0.00025 21.1 0.8 0.41 10.6 0.2 2.1 1 1 1 2 2 2 2 Thioredoxin DUF1223 PF06764.6 gi|148642898|ref|YP_001273411.1| - 0.0053 16.6 0.0 0.0065 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1223) Thioredoxin_2 PF13098.1 gi|148642898|ref|YP_001273411.1| - 0.0095 16.1 0.3 0.037 14.2 0.2 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain DEAD PF00270.24 gi|148642899|ref|YP_001273412.1| - 2.9e-16 59.4 0.4 1.4e-15 57.1 0.0 2.3 2 2 0 2 2 2 1 DEAD/DEAH box helicase HHH_2 PF12826.2 gi|148642899|ref|YP_001273412.1| - 3.4e-09 36.4 0.0 6.3e-08 32.3 0.0 2.9 4 0 0 4 4 4 1 Helix-hairpin-helix motif Helicase_C PF00271.26 gi|148642899|ref|YP_001273412.1| - 2.3e-07 30.5 0.0 5.4e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|148642899|ref|YP_001273412.1| - 4.6e-07 29.8 0.7 0.082 12.7 0.0 3.7 2 2 1 3 3 3 2 Type III restriction enzyme, res subunit HHH PF00633.18 gi|148642899|ref|YP_001273412.1| - 7.7e-07 28.4 0.1 8.8e-06 25.1 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|148642899|ref|YP_001273412.1| - 0.00018 21.5 1.5 0.0017 18.4 0.2 3.0 3 1 0 3 3 3 1 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|148642899|ref|YP_001273412.1| - 0.012 15.5 0.0 0.037 13.9 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF1849 PF08904.6 gi|148642899|ref|YP_001273412.1| - 0.071 12.4 1.5 0.12 11.6 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1849) HNOB PF07700.10 gi|148642899|ref|YP_001273412.1| - 0.09 12.3 1.5 0.34 10.4 0.0 2.3 2 0 0 2 2 2 0 Heme NO binding DUF2098 PF09871.4 gi|148642900|ref|YP_001273413.1| - 4.1e-30 103.5 2.2 4.6e-30 103.3 1.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) PRC PF05239.11 gi|148642901|ref|YP_001273414.1| - 9e-09 35.0 1.2 1.2e-08 34.7 0.8 1.1 1 0 0 1 1 1 1 PRC-barrel domain CorC_HlyC PF03471.12 gi|148642901|ref|YP_001273414.1| - 0.027 14.2 0.6 0.07 12.9 0.2 1.8 1 1 0 2 2 2 0 Transporter associated domain bPH_2 PF03703.9 gi|148642901|ref|YP_001273414.1| - 0.037 14.0 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial PH domain Radical_SAM PF04055.16 gi|148642902|ref|YP_001273415.1| - 6e-17 62.3 1.5 2.7e-16 60.1 0.2 2.4 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|148642902|ref|YP_001273415.1| - 5.9e-07 29.4 0.1 2.5e-06 27.3 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|148642902|ref|YP_001273415.1| - 0.15 12.1 0.0 0.46 10.6 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DeoC PF01791.4 gi|148642903|ref|YP_001273416.1| - 8.8e-31 106.9 0.2 1.1e-30 106.7 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase ComA PF02679.10 gi|148642903|ref|YP_001273416.1| - 0.016 14.2 0.4 0.038 13.0 0.2 1.8 1 1 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) VP9 PF09625.5 gi|148642903|ref|YP_001273416.1| - 0.025 14.3 0.3 0.08 12.7 0.2 1.8 1 0 0 1 1 1 0 VP9 protein Pkip-1 PF06878.6 gi|148642903|ref|YP_001273416.1| - 0.075 12.9 5.1 0.045 13.6 0.8 2.2 2 0 0 2 2 2 0 Pkip-1 protein HypD PF01924.11 gi|148642903|ref|YP_001273416.1| - 0.11 11.2 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase formation hypA family CheY-binding PF09078.6 gi|148642903|ref|YP_001273416.1| - 0.24 11.4 2.5 0.32 11.0 0.4 2.2 2 1 0 2 2 2 0 CheY binding DUF1128 PF06569.6 gi|148642903|ref|YP_001273416.1| - 0.31 10.8 3.8 9.3 6.0 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1128) CBFD_NFYB_HMF PF00808.18 gi|148642904|ref|YP_001273417.1| - 2.9e-21 75.2 0.5 3.1e-21 75.1 0.3 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|148642904|ref|YP_001273417.1| - 1.1e-12 47.8 0.0 1.2e-12 47.7 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.12 gi|148642904|ref|YP_001273417.1| - 2e-07 30.8 0.2 2e-07 30.8 0.2 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.1 gi|148642904|ref|YP_001273417.1| - 5.1e-07 29.7 0.0 5.5e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID-31kDa PF02291.10 gi|148642904|ref|YP_001273417.1| - 0.00032 20.4 0.0 0.00036 20.3 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-T PF15511.1 gi|148642904|ref|YP_001273417.1| - 0.011 14.9 0.9 0.011 14.9 0.6 1.3 1 1 0 1 1 1 0 Centromere kinetochore component CENP-T Bromo_TP PF07524.8 gi|148642904|ref|YP_001273417.1| - 0.044 13.5 0.0 0.054 13.2 0.0 1.2 1 1 0 1 1 1 0 Bromodomain associated TFIID_20kDa PF03847.8 gi|148642904|ref|YP_001273417.1| - 0.046 13.9 0.1 0.051 13.8 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A UPF0004 PF00919.15 gi|148642905|ref|YP_001273418.1| - 2.3e-24 85.0 0.0 4.9e-24 84.0 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.16 gi|148642905|ref|YP_001273418.1| - 3.9e-24 85.6 0.1 7.9e-24 84.6 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.15 gi|148642905|ref|YP_001273418.1| - 6.5e-13 48.2 1.9 1.2e-12 47.3 1.3 1.5 1 0 0 1 1 1 1 TRAM domain Bac_GDH PF05088.7 gi|148642905|ref|YP_001273418.1| - 0.013 12.9 0.2 0.019 12.3 0.1 1.2 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase TF_Zn_Ribbon PF08271.7 gi|148642906|ref|YP_001273419.1| - 0.0037 16.5 0.8 0.26 10.6 0.1 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|148642906|ref|YP_001273419.1| - 0.0063 16.7 0.2 0.012 15.9 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|148642906|ref|YP_001273419.1| - 0.02 14.8 0.5 1.3 9.0 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|148642906|ref|YP_001273419.1| - 0.14 11.8 3.4 1.2 8.9 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|148642906|ref|YP_001273419.1| - 0.38 10.4 1.4 1.6 8.3 0.9 1.9 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) Aconitase_C PF00694.14 gi|148642907|ref|YP_001273420.1| - 5.1e-22 78.3 0.1 4.7e-20 72.0 0.0 2.2 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|148642907|ref|YP_001273420.1| - 0.0069 15.8 0.4 0.056 12.8 0.3 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus GHMP_kinases_C PF08544.8 gi|148642908|ref|YP_001273421.1| - 1.4e-07 31.5 0.0 3.6e-07 30.2 0.0 1.7 2 0 0 2 2 2 1 GHMP kinases C terminal Radical_SAM PF04055.16 gi|148642909|ref|YP_001273422.1| - 1.6e-23 83.6 0.5 6.6e-23 81.6 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|148642909|ref|YP_001273422.1| - 7.8e-10 39.0 0.3 3.9e-09 36.7 0.0 2.2 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|148642909|ref|YP_001273422.1| - 4.8e-09 36.2 0.9 3.7e-08 33.4 0.0 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF46 PF01864.12 gi|148642910|ref|YP_001273423.1| - 8e-57 191.9 14.3 9.6e-57 191.6 9.9 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|148642910|ref|YP_001273423.1| - 6.6e-07 29.2 6.5 6.6e-07 29.2 4.5 2.4 2 1 1 3 3 3 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.1 gi|148642910|ref|YP_001273423.1| - 2.2 7.8 5.8 15 5.1 0.1 2.4 2 0 0 2 2 2 0 YMGG-like Gly-zipper Hydantoinase_A PF01968.13 gi|148642911|ref|YP_001273424.1| - 9.6e-19 67.5 0.7 2.5e-16 59.6 0.3 2.3 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|148642911|ref|YP_001273424.1| - 0.00014 21.4 1.9 0.17 11.3 0.1 3.2 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|148642911|ref|YP_001273424.1| - 0.0058 14.9 0.1 0.64 8.2 0.0 2.3 2 0 0 2 2 2 2 MutL protein DUF1152 PF06626.7 gi|148642911|ref|YP_001273424.1| - 0.062 12.4 0.3 0.44 9.5 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1152) FtsA PF14450.1 gi|148642911|ref|YP_001273424.1| - 0.2 11.4 1.6 14 5.5 0.0 3.0 3 1 0 3 3 3 0 Cell division protein FtsA ATP-grasp_3 PF02655.9 gi|148642912|ref|YP_001273425.1| - 8.5e-34 116.7 0.1 3.2e-33 114.8 0.0 1.9 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|148642912|ref|YP_001273425.1| - 7.3e-12 45.3 0.0 1.1e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|148642912|ref|YP_001273425.1| - 1.2e-06 27.5 0.0 1.1e-05 24.3 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.14 gi|148642912|ref|YP_001273425.1| - 0.00012 21.6 0.3 0.00068 19.2 0.1 2.2 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.8 gi|148642912|ref|YP_001273425.1| - 0.00031 20.1 0.0 0.0012 18.2 0.0 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus Epimerase_2 PF02350.14 gi|148642913|ref|YP_001273426.1| - 3.8e-118 394.2 0.5 4.6e-118 393.9 0.3 1.1 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_1 PF00534.15 gi|148642913|ref|YP_001273426.1| - 0.00014 21.3 0.3 0.00038 19.9 0.2 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|148642913|ref|YP_001273426.1| - 0.00045 20.0 0.6 0.0019 18.0 0.0 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like DUF349 PF03993.7 gi|148642913|ref|YP_001273426.1| - 0.073 13.2 0.2 6.7 6.9 0.0 2.5 2 0 0 2 2 2 0 Domain of Unknown Function (DUF349) PseudoU_synth_1 PF01416.15 gi|148642915|ref|YP_001273428.1| - 4.8e-35 120.1 0.0 1.7e-19 70.2 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase FtsX PF02687.16 gi|148642916|ref|YP_001273429.1| - 9.4e-31 106.0 28.2 7.4e-17 61.2 7.1 3.1 4 0 0 4 4 4 2 FtsX-like permease family MacB_PCD PF12704.2 gi|148642916|ref|YP_001273429.1| - 3.3e-10 39.9 14.2 5.5e-06 26.1 0.2 4.7 4 1 0 4 4 4 2 MacB-like periplasmic core domain Claudin_2 PF13903.1 gi|148642916|ref|YP_001273429.1| - 0.012 15.2 4.8 0.25 11.0 0.1 3.5 3 0 0 3 3 3 0 PMP-22/EMP/MP20/Claudin tight junction DUF202 PF02656.10 gi|148642916|ref|YP_001273429.1| - 1.7 8.9 5.8 5.4 7.3 0.0 3.8 3 1 0 3 3 3 0 Domain of unknown function (DUF202) ABC_tran PF00005.22 gi|148642917|ref|YP_001273430.1| - 5.9e-35 120.5 0.0 1.1e-34 119.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|148642917|ref|YP_001273430.1| - 2.1e-10 41.0 1.3 0.00013 21.9 0.1 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|148642917|ref|YP_001273430.1| - 9.9e-08 31.4 0.2 7.5e-05 22.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|148642917|ref|YP_001273430.1| - 3.8e-06 26.1 0.0 6.3e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|148642917|ref|YP_001273430.1| - 7.3e-05 22.3 0.4 0.0064 15.9 0.3 2.1 1 1 0 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|148642917|ref|YP_001273430.1| - 0.0001 21.5 0.5 0.16 10.9 0.0 2.2 1 1 1 2 2 2 2 AAA ATPase domain RNA12 PF10443.4 gi|148642917|ref|YP_001273430.1| - 0.00014 20.5 0.0 0.00024 19.7 0.0 1.4 1 0 0 1 1 1 1 RNA12 protein AAA_29 PF13555.1 gi|148642917|ref|YP_001273430.1| - 0.00022 20.6 0.0 0.00047 19.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|148642917|ref|YP_001273430.1| - 0.00042 20.3 0.0 0.00051 20.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|148642917|ref|YP_001273430.1| - 0.00095 19.4 0.1 0.014 15.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|148642917|ref|YP_001273430.1| - 0.0013 19.0 1.6 0.0018 18.6 0.3 1.7 1 1 1 2 2 2 1 AAA domain ABC_ATPase PF09818.4 gi|148642917|ref|YP_001273430.1| - 0.0024 16.5 1.4 2.6 6.5 0.0 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|148642917|ref|YP_001273430.1| - 0.0028 18.4 0.1 0.0048 17.6 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|148642917|ref|YP_001273430.1| - 0.0054 16.1 0.2 0.017 14.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|148642917|ref|YP_001273430.1| - 0.007 16.0 0.0 0.023 14.4 0.0 2.0 1 1 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|148642917|ref|YP_001273430.1| - 0.0073 16.4 0.1 0.029 14.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain MutS_V PF00488.16 gi|148642917|ref|YP_001273430.1| - 0.0079 15.6 0.0 1.7 7.9 0.0 2.2 2 0 0 2 2 2 1 MutS domain V AAA_13 PF13166.1 gi|148642917|ref|YP_001273430.1| - 0.013 14.0 0.4 1.6 7.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|148642917|ref|YP_001273430.1| - 0.019 14.8 1.4 0.073 12.8 0.4 2.1 2 0 0 2 2 2 0 Dynamin family AAA_28 PF13521.1 gi|148642917|ref|YP_001273430.1| - 0.02 14.8 0.4 0.057 13.3 0.2 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|148642917|ref|YP_001273430.1| - 0.026 14.1 0.1 0.13 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|148642917|ref|YP_001273430.1| - 0.026 14.4 2.4 0.052 13.5 1.6 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase IstB_IS21 PF01695.12 gi|148642917|ref|YP_001273430.1| - 0.029 13.8 0.1 0.071 12.5 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|148642917|ref|YP_001273430.1| - 0.049 13.5 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|148642917|ref|YP_001273430.1| - 0.052 13.0 0.4 0.22 10.9 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|148642917|ref|YP_001273430.1| - 0.071 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|148642917|ref|YP_001273430.1| - 0.077 12.6 0.2 0.67 9.5 0.1 2.1 2 0 0 2 2 2 0 NACHT domain SbcCD_C PF13558.1 gi|148642917|ref|YP_001273430.1| - 0.081 12.8 0.1 0.74 9.7 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.10 gi|148642917|ref|YP_001273430.1| - 0.095 12.4 1.2 7.9 6.1 0.0 2.2 2 0 0 2 2 2 0 NTPase Guanylate_kin PF00625.16 gi|148642917|ref|YP_001273430.1| - 0.11 11.8 0.5 0.33 10.3 0.1 1.9 2 0 0 2 2 2 0 Guanylate kinase His_biosynth PF00977.16 gi|148642918|ref|YP_001273431.1| - 1.5e-69 233.7 0.9 1.7e-69 233.5 0.6 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|148642918|ref|YP_001273431.1| - 2.1e-07 30.4 1.5 0.00079 18.7 0.0 2.7 2 1 1 3 3 3 2 PcrB family Dus PF01207.12 gi|148642918|ref|YP_001273431.1| - 3.6e-06 26.0 0.0 0.0033 16.3 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|148642918|ref|YP_001273431.1| - 2e-05 23.7 0.1 0.04 13.0 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.15 gi|148642918|ref|YP_001273431.1| - 3.9e-05 22.3 0.1 0.0053 15.3 0.0 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain IGPS PF00218.16 gi|148642918|ref|YP_001273431.1| - 0.00016 20.7 0.1 0.0031 16.6 0.0 2.5 2 1 1 3 3 3 1 Indole-3-glycerol phosphate synthase TMP-TENI PF02581.12 gi|148642918|ref|YP_001273431.1| - 0.002 17.3 0.1 0.058 12.5 0.0 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|148642918|ref|YP_001273431.1| - 0.0027 16.9 0.0 0.14 11.2 0.0 2.2 1 1 1 2 2 2 1 Nitronate monooxygenase NanE PF04131.9 gi|148642918|ref|YP_001273431.1| - 0.0058 15.6 0.1 0.48 9.3 0.0 2.6 2 1 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase TIM PF00121.13 gi|148642918|ref|YP_001273431.1| - 0.022 13.8 0.6 0.76 8.7 0.1 2.4 2 1 0 2 2 2 0 Triosephosphate isomerase DHO_dh PF01180.16 gi|148642918|ref|YP_001273431.1| - 0.025 13.5 0.3 0.088 11.7 0.0 1.8 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Ribul_P_3_epim PF00834.14 gi|148642918|ref|YP_001273431.1| - 0.059 12.4 0.1 0.37 9.8 0.0 2.2 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.13 gi|148642918|ref|YP_001273431.1| - 0.11 11.2 0.1 1.3 7.7 0.0 2.0 2 0 0 2 2 2 0 FMN-dependent dehydrogenase QRPTase_C PF01729.14 gi|148642918|ref|YP_001273431.1| - 0.15 11.6 0.1 1.2 8.6 0.0 2.0 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain CTP_transf_2 PF01467.21 gi|148642919|ref|YP_001273432.1| - 1.3e-14 54.5 0.1 2.1e-14 53.8 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|148642919|ref|YP_001273432.1| - 0.001 18.7 0.1 0.0042 16.7 0.1 2.0 1 1 0 1 1 1 1 FAD synthetase Semialdhyde_dh PF01118.19 gi|148642920|ref|YP_001273433.1| - 1.1e-34 119.3 0.0 1.7e-34 118.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|148642920|ref|YP_001273433.1| - 9.9e-25 87.4 0.0 1.4e-24 86.9 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|148642920|ref|YP_001273433.1| - 0.0017 18.2 0.0 0.0044 16.9 0.0 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|148642920|ref|YP_001273433.1| - 0.041 14.4 0.0 0.075 13.5 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Flavodoxin_4 PF12682.2 gi|148642921|ref|YP_001273434.1| - 2.6e-13 49.6 0.0 3.1e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|148642921|ref|YP_001273434.1| - 9.9e-10 38.5 0.0 0.00012 22.1 0.1 2.1 1 1 1 2 2 2 2 Flavodoxin domain FMN_red PF03358.10 gi|148642921|ref|YP_001273434.1| - 1e-08 34.8 0.0 1.2e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|148642921|ref|YP_001273434.1| - 7.5e-08 32.4 0.1 1.1e-05 25.5 0.1 2.2 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|148642921|ref|YP_001273434.1| - 1.5e-07 30.9 0.0 0.0031 16.9 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_2 PF02525.12 gi|148642921|ref|YP_001273434.1| - 0.0059 16.1 0.0 0.0071 15.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold SIS PF01380.17 gi|148642921|ref|YP_001273434.1| - 0.12 11.9 0.1 8.9 5.9 0.0 2.2 2 0 0 2 2 2 0 SIS domain PyrI PF01948.13 gi|148642922|ref|YP_001273435.1| - 3.3e-36 123.1 6.6 5.2e-36 122.5 4.6 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|148642922|ref|YP_001273435.1| - 9.1e-20 69.8 6.5 1.6e-19 69.0 4.5 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Sialidase PF02973.11 gi|148642922|ref|YP_001273435.1| - 0.03 13.2 0.1 0.038 12.9 0.1 1.3 1 0 0 1 1 1 0 Sialidase, N-terminal domain PerB PF06590.6 gi|148642922|ref|YP_001273435.1| - 0.049 13.9 0.7 0.08 13.2 0.3 1.6 1 1 0 1 1 1 0 PerB protein Methyltransf_20 PF12147.3 gi|148642922|ref|YP_001273435.1| - 0.12 11.2 0.0 0.14 11.0 0.0 1.0 1 0 0 1 1 1 0 Putative methyltransferase Pyridox_oxidase PF01243.15 gi|148642923|ref|YP_001273436.1| - 2.1e-11 43.6 0.0 4.3e-11 42.6 0.0 1.5 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|148642923|ref|YP_001273436.1| - 0.015 15.1 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase HxlR PF01638.12 gi|148642924|ref|YP_001273437.1| - 2e-22 78.5 0.1 2.6e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF505 PF04458.7 gi|148642924|ref|YP_001273437.1| - 0.00064 17.9 0.1 0.00072 17.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) PadR PF03551.9 gi|148642924|ref|YP_001273437.1| - 0.0012 18.5 0.1 0.0022 17.7 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|148642924|ref|YP_001273437.1| - 0.0079 15.9 0.6 0.015 15.1 0.3 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix Ribosomal_S19e PF01090.14 gi|148642924|ref|YP_001273437.1| - 0.021 14.2 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S19e tRNA-synt_2d PF01409.15 gi|148642924|ref|YP_001273437.1| - 0.039 13.1 0.0 0.058 12.5 0.0 1.4 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) HTH_24 PF13412.1 gi|148642924|ref|YP_001273437.1| - 0.072 12.4 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|148642924|ref|YP_001273437.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.6 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain GMC_oxred_N PF00732.14 gi|148642925|ref|YP_001273438.1| - 5.3e-14 52.0 0.0 7e-13 48.3 0.0 2.3 1 1 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|148642925|ref|YP_001273438.1| - 1.1e-12 47.5 0.1 2.9e-06 26.4 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|148642925|ref|YP_001273438.1| - 1.3e-11 44.0 0.1 0.00013 20.9 0.0 2.7 3 0 0 3 3 3 2 FAD binding domain GMC_oxred_C PF05199.8 gi|148642925|ref|YP_001273438.1| - 6.8e-08 32.9 0.0 1.2e-07 32.0 0.0 1.5 1 0 0 1 1 1 1 GMC oxidoreductase Fer4 PF00037.22 gi|148642925|ref|YP_001273438.1| - 2.2e-06 27.0 2.8 4.2e-06 26.1 1.9 1.5 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|148642925|ref|YP_001273438.1| - 6.2e-05 22.6 3.5 0.00012 21.7 2.4 1.4 1 0 0 1 1 1 1 4Fe-4S binding domain NAD_binding_8 PF13450.1 gi|148642925|ref|YP_001273438.1| - 0.00013 21.9 0.5 0.00056 19.8 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Fer4_9 PF13187.1 gi|148642925|ref|YP_001273438.1| - 0.00032 20.9 0.1 0.00062 19.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642925|ref|YP_001273438.1| - 0.00062 19.5 2.9 0.0017 18.1 2.0 1.7 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148642925|ref|YP_001273438.1| - 0.00076 19.2 0.3 0.0014 18.3 0.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148642925|ref|YP_001273438.1| - 0.0011 18.7 0.7 0.0026 17.5 0.4 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|148642925|ref|YP_001273438.1| - 0.0013 18.6 7.2 0.038 13.8 5.0 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|148642925|ref|YP_001273438.1| - 0.0018 17.2 0.4 0.74 8.6 0.1 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|148642925|ref|YP_001273438.1| - 0.0023 16.5 2.4 0.0096 14.4 0.5 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|148642925|ref|YP_001273438.1| - 0.0027 16.8 0.4 0.0051 15.9 0.3 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_7 PF12838.2 gi|148642925|ref|YP_001273438.1| - 0.003 17.8 0.2 0.0059 16.9 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|148642925|ref|YP_001273438.1| - 0.0032 17.8 1.0 0.23 11.8 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_8 PF13183.1 gi|148642925|ref|YP_001273438.1| - 0.0036 17.2 0.0 0.006 16.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148642925|ref|YP_001273438.1| - 0.008 16.4 2.5 0.016 15.5 1.7 1.4 1 0 0 1 1 1 1 4Fe-4S binding domain ApbA PF02558.11 gi|148642925|ref|YP_001273438.1| - 0.015 14.7 0.0 0.034 13.5 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Fer4_17 PF13534.1 gi|148642925|ref|YP_001273438.1| - 0.021 15.1 0.2 0.038 14.3 0.2 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642925|ref|YP_001273438.1| - 0.026 15.2 0.3 0.053 14.2 0.2 1.5 1 0 0 1 1 1 0 4Fe-4S double cluster binding domain Thi4 PF01946.12 gi|148642925|ref|YP_001273438.1| - 0.041 12.9 4.0 0.21 10.6 0.5 2.8 2 1 1 3 3 3 0 Thi4 family Lycopene_cycl PF05834.7 gi|148642925|ref|YP_001273438.1| - 0.13 11.1 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|148642925|ref|YP_001273438.1| - 0.19 10.7 0.3 15 4.5 0.0 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase Fer4_3 PF12798.2 gi|148642925|ref|YP_001273438.1| - 1.8 9.3 5.8 3.1 8.5 4.0 1.4 1 0 0 1 1 1 0 4Fe-4S binding domain PmbA_TldD PF01523.11 gi|148642926|ref|YP_001273439.1| - 1.2e-74 251.2 1.5 1.5e-74 250.9 1.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase AMMECR1 PF01871.12 gi|148642927|ref|YP_001273440.1| - 1.1e-54 184.0 0.0 1.3e-54 183.9 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 NOG1 PF06858.9 gi|148642929|ref|YP_001273442.1| - 1.6e-21 75.9 0.4 3.5e-21 74.8 0.2 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|148642929|ref|YP_001273442.1| - 2.2e-20 72.7 0.0 4.4e-20 71.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|148642929|ref|YP_001273442.1| - 8.5e-16 57.6 0.1 1.4e-15 56.9 0.1 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|148642929|ref|YP_001273442.1| - 7.1e-08 32.9 0.0 2.4e-07 31.2 0.0 1.9 2 0 0 2 2 1 1 Miro-like protein AIG1 PF04548.11 gi|148642929|ref|YP_001273442.1| - 9e-07 28.2 0.0 1.6e-06 27.3 0.0 1.5 1 1 0 1 1 1 1 AIG1 family GTP_EFTU PF00009.22 gi|148642929|ref|YP_001273442.1| - 1.1e-05 25.0 0.1 0.0027 17.1 0.1 3.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|148642929|ref|YP_001273442.1| - 4.2e-05 23.4 0.1 0.13 12.1 0.0 2.5 1 1 1 2 2 2 2 Dynamin family DUF258 PF03193.11 gi|148642929|ref|YP_001273442.1| - 0.00049 19.3 0.0 0.0032 16.6 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function, DUF258 Gtr1_RagA PF04670.7 gi|148642929|ref|YP_001273442.1| - 0.0024 17.0 0.1 0.0035 16.5 0.0 1.4 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region Arf PF00025.16 gi|148642929|ref|YP_001273442.1| - 0.0028 16.9 0.5 0.13 11.5 0.1 2.9 2 1 0 2 2 2 1 ADP-ribosylation factor family AAA_18 PF13238.1 gi|148642929|ref|YP_001273442.1| - 0.0047 17.2 0.8 0.05 13.9 0.5 2.5 1 1 0 1 1 1 1 AAA domain Ras PF00071.17 gi|148642929|ref|YP_001273442.1| - 0.01 15.2 0.0 0.06 12.7 0.0 2.1 1 1 0 1 1 1 1 Ras family cobW PF02492.14 gi|148642929|ref|YP_001273442.1| - 0.012 15.0 0.1 3.4 7.0 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|148642929|ref|YP_001273442.1| - 0.041 14.6 0.0 0.13 13.1 0.0 2.0 1 1 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|148642929|ref|YP_001273442.1| - 0.045 12.9 0.1 0.13 11.4 0.0 1.7 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF1647 PF07801.6 gi|148642929|ref|YP_001273442.1| - 0.084 12.3 0.2 0.21 11.0 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1647) AAA_14 PF13173.1 gi|148642929|ref|YP_001273442.1| - 0.089 12.6 0.3 0.27 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain HSP20 PF00011.16 gi|148642930|ref|YP_001273443.1| - 6.6e-16 58.0 1.1 6.6e-16 58.0 0.8 1.9 2 0 0 2 2 2 1 Hsp20/alpha crystallin family Apolipoprotein PF01442.13 gi|148642930|ref|YP_001273443.1| - 0.025 14.0 1.8 0.053 13.0 1.1 1.6 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain GrpE PF01025.14 gi|148642930|ref|YP_001273443.1| - 0.044 13.3 7.1 0.073 12.6 5.0 1.4 1 0 0 1 1 1 0 GrpE CS PF04969.11 gi|148642930|ref|YP_001273443.1| - 0.047 14.2 3.2 0.18 12.3 2.2 2.0 1 1 0 1 1 1 0 CS domain YlbD_coat PF14071.1 gi|148642930|ref|YP_001273443.1| - 0.11 12.5 4.5 0.35 10.9 2.2 2.0 2 0 0 2 2 2 0 Putative coat protein LEA_4 PF02987.11 gi|148642930|ref|YP_001273443.1| - 0.18 11.7 9.8 0.44 10.4 6.8 1.8 1 0 0 1 1 1 0 Late embryogenesis abundant protein COG5 PF10392.4 gi|148642930|ref|YP_001273443.1| - 0.21 11.5 2.2 0.36 10.7 1.5 1.3 1 0 0 1 1 1 0 Golgi transport complex subunit 5 DUF883 PF05957.8 gi|148642930|ref|YP_001273443.1| - 0.51 10.7 3.4 1.1 9.7 2.2 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) TMPIT PF07851.8 gi|148642930|ref|YP_001273443.1| - 0.67 8.9 5.3 0.92 8.5 3.7 1.2 1 0 0 1 1 1 0 TMPIT-like protein Streptin-Immun PF11083.3 gi|148642930|ref|YP_001273443.1| - 1.1 9.2 8.0 1.6 8.8 4.5 2.1 2 1 0 2 2 2 0 Lantibiotic streptin immunity protein DDE_Tnp_IS66 PF03050.9 gi|148642931|ref|YP_001273444.1| - 4.5e-08 32.6 3.0 2.4e-07 30.2 2.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family Zn_Tnp_IS1595 PF12760.2 gi|148642931|ref|YP_001273444.1| - 0.00061 19.5 2.0 0.0015 18.2 1.4 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148642931|ref|YP_001273444.1| - 0.03 13.6 1.7 0.28 10.5 1.1 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|148642931|ref|YP_001273444.1| - 0.063 13.2 3.8 3.5 7.6 1.0 2.8 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|148642931|ref|YP_001273444.1| - 0.098 12.9 0.2 0.31 11.3 0.1 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|148642931|ref|YP_001273444.1| - 0.33 10.6 4.6 6 6.5 3.2 2.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|148642931|ref|YP_001273444.1| - 0.68 10.0 9.3 0.53 10.3 0.4 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TetR_C_8 PF14278.1 gi|148642931|ref|YP_001273444.1| - 1.3 9.4 6.9 0.75 10.2 0.5 3.6 2 1 0 3 3 3 0 Transcriptional regulator C-terminal region Transposase_mut PF00872.13 gi|148642931|ref|YP_001273444.1| - 4.1 5.8 7.2 25 3.2 2.6 2.9 2 1 1 3 3 3 0 Transposase, Mutator family SIS PF01380.17 gi|148642932|ref|YP_001273445.1| - 8.7e-24 83.6 0.2 1.7e-18 66.5 0.1 2.1 2 0 0 2 2 2 2 SIS domain DUF3503 PF12011.3 gi|148642932|ref|YP_001273445.1| - 0.011 15.4 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3503) CPSase_L_chain PF00289.17 gi|148642932|ref|YP_001273445.1| - 0.012 15.7 0.0 1.4 9.0 0.0 2.5 1 1 1 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain bact-PGI_C PF10432.4 gi|148642932|ref|YP_001273445.1| - 0.013 15.2 0.0 0.026 14.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal region SIS_2 PF13580.1 gi|148642932|ref|YP_001273445.1| - 0.027 14.1 0.2 3.6 7.3 0.0 3.1 2 2 0 3 3 3 0 SIS domain Mg296 PF09644.5 gi|148642932|ref|YP_001273445.1| - 0.083 12.7 1.0 0.92 9.3 0.1 2.2 2 0 0 2 2 2 0 Mg296 protein DUF447 PF04289.7 gi|148642933|ref|YP_001273446.1| - 5.9e-49 166.0 2.6 6.7e-49 165.8 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Flavin_Reduct PF01613.13 gi|148642933|ref|YP_001273446.1| - 0.11 12.2 0.0 0.21 11.4 0.0 1.7 1 1 0 1 1 1 0 Flavin reductase like domain DUF1694 PF07997.6 gi|148642933|ref|YP_001273446.1| - 0.12 12.3 2.2 0.67 9.8 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1694) Adenine_deam_C PF13382.1 gi|148642934|ref|YP_001273447.1| - 2.7e-67 225.1 0.1 5.2e-67 224.2 0.1 1.5 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|148642934|ref|YP_001273447.1| - 2.6e-32 112.8 0.1 5.5e-31 108.4 0.1 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|148642934|ref|YP_001273447.1| - 5.6e-08 32.4 0.1 1.7e-07 30.9 0.1 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|148642934|ref|YP_001273447.1| - 5.4e-07 29.9 0.0 1.2e-05 25.5 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|148642934|ref|YP_001273447.1| - 0.00027 20.2 0.0 0.23 10.6 0.0 2.5 3 0 0 3 3 3 2 Amidohydrolase family Saccharop_dh_N PF04455.7 gi|148642935|ref|YP_001273448.1| - 9.7e-36 122.0 0.1 2.4e-35 120.7 0.1 1.7 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region Lipoprotein_9 PF03180.9 gi|148642935|ref|YP_001273448.1| - 0.073 11.9 0.6 0.22 10.3 0.0 2.0 3 0 0 3 3 3 0 NLPA lipoprotein Arginase PF00491.16 gi|148642936|ref|YP_001273449.1| - 1.7e-62 211.2 0.1 2.2e-62 210.8 0.0 1.0 1 0 0 1 1 1 1 Arginase family UPF0489 PF12640.2 gi|148642936|ref|YP_001273449.1| - 0.28 11.3 2.9 0.33 11.1 0.9 1.8 1 1 1 2 2 2 0 UPF0489 domain eIF-5a PF01287.15 gi|148642937|ref|YP_001273450.1| - 3.4e-16 58.9 1.4 5.3e-16 58.3 1.0 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP PF01132.15 gi|148642937|ref|YP_001273450.1| - 0.039 13.6 0.1 0.055 13.1 0.1 1.3 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain PvlArgDC PF01862.11 gi|148642938|ref|YP_001273451.1| - 1.2e-30 106.3 1.1 1.3e-30 106.1 0.8 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DUF218 PF02698.12 gi|148642938|ref|YP_001273451.1| - 0.0013 18.2 0.1 0.0043 16.5 0.0 1.7 2 0 0 2 2 2 1 DUF218 domain HDC PF02329.11 gi|148642938|ref|YP_001273451.1| - 0.1 11.2 0.9 4.8 5.7 0.0 2.1 1 1 1 2 2 2 0 Histidine carboxylase PI chain NAD_kinase PF01513.16 gi|148642939|ref|YP_001273452.1| - 1.7e-60 204.2 0.6 2.6e-60 203.6 0.4 1.3 1 0 0 1 1 1 1 ATP-NAD kinase Inositol_P PF00459.20 gi|148642939|ref|YP_001273452.1| - 1.5e-30 106.4 0.0 2.2e-30 105.8 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|148642939|ref|YP_001273452.1| - 1.3e-05 24.1 0.4 0.0035 16.2 0.0 3.6 3 1 0 3 3 3 1 Fructose-1-6-bisphosphatase CHASE4 PF05228.8 gi|148642939|ref|YP_001273452.1| - 0.018 14.6 0.0 1.5 8.3 0.0 2.7 3 0 0 3 3 3 0 CHASE4 domain Mur_ligase_M PF08245.7 gi|148642940|ref|YP_001273453.1| - 3.3e-08 33.8 3.1 1e-07 32.1 2.1 1.9 1 1 0 1 1 1 1 Mur ligase middle domain Porphobil_deam PF01379.15 gi|148642941|ref|YP_001273454.1| - 3.4e-66 222.2 0.1 4.4e-66 221.8 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|148642941|ref|YP_001273454.1| - 1.4e-13 50.7 0.0 2.6e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain GFO_IDH_MocA PF01408.17 gi|148642942|ref|YP_001273455.1| - 3.6e-33 114.6 1.0 6e-33 113.9 0.7 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|148642942|ref|YP_001273455.1| - 1.7e-12 47.1 0.0 2.9e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.10 gi|148642942|ref|YP_001273455.1| - 8.7e-07 28.9 0.1 2.1e-06 27.7 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|148642942|ref|YP_001273455.1| - 6.5e-06 26.4 0.2 6.3e-05 23.3 0.0 2.2 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.11 gi|148642942|ref|YP_001273455.1| - 8.3e-06 26.1 0.3 1.5e-05 25.3 0.2 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|148642942|ref|YP_001273455.1| - 0.00042 20.7 2.1 0.00059 20.2 0.2 2.2 2 1 1 3 3 3 1 CoA binding domain OCD_Mu_crystall PF02423.10 gi|148642942|ref|YP_001273455.1| - 0.0016 17.2 0.2 0.0049 15.6 0.1 1.8 2 1 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family DapB_N PF01113.15 gi|148642942|ref|YP_001273455.1| - 0.0051 16.7 1.4 0.018 14.9 0.4 2.3 2 1 1 3 3 3 1 Dihydrodipicolinate reductase, N-terminus HTH_6 PF01418.12 gi|148642942|ref|YP_001273455.1| - 0.016 14.8 0.0 0.039 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family 2-Hacid_dh_C PF02826.14 gi|148642942|ref|YP_001273455.1| - 0.023 13.8 0.0 0.049 12.7 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|148642942|ref|YP_001273455.1| - 0.026 13.5 0.4 0.038 12.9 0.3 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase IlvN PF07991.7 gi|148642942|ref|YP_001273455.1| - 0.028 13.7 0.2 0.046 13.0 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|148642942|ref|YP_001273455.1| - 0.041 13.5 0.1 0.073 12.7 0.1 1.5 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|148642942|ref|YP_001273455.1| - 0.046 14.0 0.2 0.095 13.0 0.2 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain CoA_binding_2 PF13380.1 gi|148642942|ref|YP_001273455.1| - 0.048 13.8 0.1 0.18 12.0 0.1 1.9 1 1 0 1 1 1 0 CoA binding domain Gp_dh_N PF00044.19 gi|148642942|ref|YP_001273455.1| - 0.076 12.9 0.3 0.19 11.6 0.2 1.8 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HHH_5 PF14520.1 gi|148642942|ref|YP_001273455.1| - 0.11 12.7 0.0 0.32 11.1 0.0 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix domain Pribosyltran PF00156.22 gi|148642943|ref|YP_001273456.1| - 1.5e-21 76.3 0.6 4.8e-21 74.7 0.3 1.8 1 1 1 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|148642943|ref|YP_001273456.1| - 0.00015 21.0 0.0 0.0002 20.6 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|148642943|ref|YP_001273456.1| - 0.00076 18.8 0.3 0.0013 18.0 0.1 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_23 PF13384.1 gi|148642943|ref|YP_001273456.1| - 0.002 17.6 0.0 0.0045 16.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|148642943|ref|YP_001273456.1| - 0.024 14.2 0.0 0.056 13.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain GerE PF00196.14 gi|148642943|ref|YP_001273456.1| - 0.061 12.6 0.0 0.33 10.3 0.0 2.1 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family HTH_DeoR PF08220.7 gi|148642943|ref|YP_001273456.1| - 0.079 12.5 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Pribosyl_synth PF14572.1 gi|148642943|ref|YP_001273456.1| - 0.087 12.5 1.3 0.14 11.9 0.9 1.5 1 1 0 1 1 1 0 Phosphoribosyl synthetase-associated domain FeThRed_A PF02941.10 gi|148642943|ref|YP_001273456.1| - 0.11 12.4 0.5 0.41 10.6 0.1 2.0 2 0 0 2 2 2 0 Ferredoxin thioredoxin reductase variable alpha chain DUF4399 PF14347.1 gi|148642945|ref|YP_001273458.1| - 3e-28 97.6 13.9 7.1e-07 29.1 0.2 9.1 7 1 2 9 9 9 5 Domain of unknown function (DUF4399) CarboxypepD_reg PF13620.1 gi|148642945|ref|YP_001273458.1| - 1.7e-17 63.2 44.0 3.6e-06 26.9 2.0 13.0 12 2 1 13 13 13 3 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|148642945|ref|YP_001273458.1| - 7.9e-10 38.5 66.9 0.0017 18.1 2.8 12.1 10 2 3 13 13 13 7 Bacterial Ig-like domain (group 1) Cupredoxin_1 PF13473.1 gi|148642945|ref|YP_001273458.1| - 7.7e-07 28.9 2.8 0.042 13.7 0.1 5.6 5 2 2 7 7 7 2 Cupredoxin-like domain DUF824 PF05688.6 gi|148642945|ref|YP_001273458.1| - 0.039 13.5 10.1 17 5.1 0.2 5.9 5 0 0 5 5 5 0 Salmonella repeat of unknown function (DUF824) DUF1344 PF07076.6 gi|148642946|ref|YP_001273459.1| - 0.084 12.4 0.0 0.084 12.4 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1344) Usp PF00582.21 gi|148642947|ref|YP_001273460.1| - 9.5e-28 97.1 0.1 1.1e-27 96.9 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family ELFV_dehydrog PF00208.16 gi|148642948|ref|YP_001273461.1| - 9.5e-86 287.3 3.0 1.2e-85 286.9 2.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|148642948|ref|YP_001273461.1| - 2.5e-47 159.7 0.0 7.4e-47 158.2 0.0 1.8 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain P4Ha_N PF08336.6 gi|148642949|ref|YP_001273462.1| - 0.038 13.8 0.1 0.048 13.4 0.1 1.2 1 1 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Meiosis_expr PF15163.1 gi|148642949|ref|YP_001273462.1| - 0.11 12.9 1.8 0.33 11.3 0.1 2.0 1 1 1 2 2 2 0 Meiosis-expressed eRF1_2 PF03464.10 gi|148642951|ref|YP_001273464.1| - 2.7e-40 137.7 0.1 6.7e-40 136.4 0.1 1.7 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|148642951|ref|YP_001273464.1| - 3.9e-33 114.0 1.8 1.5e-32 112.2 1.3 2.0 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|148642951|ref|YP_001273464.1| - 9.6e-27 93.1 0.2 2.8e-26 91.6 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 1 Elf1 PF05129.8 gi|148642951|ref|YP_001273464.1| - 2e-05 24.1 0.5 4.8e-05 22.9 0.3 1.6 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.7 gi|148642951|ref|YP_001273464.1| - 0.0051 16.0 2.8 0.018 14.3 1.9 2.0 1 1 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|148642951|ref|YP_001273464.1| - 0.0056 15.8 1.4 2.1 7.6 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain PCNA_N PF00705.13 gi|148642951|ref|YP_001273464.1| - 0.022 14.2 0.1 0.042 13.3 0.0 1.5 1 0 0 1 1 1 0 Proliferating cell nuclear antigen, N-terminal domain Desulfoferrod_N PF06397.7 gi|148642951|ref|YP_001273464.1| - 0.056 12.8 1.3 0.18 11.2 0.0 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF3797 PF12677.2 gi|148642951|ref|YP_001273464.1| - 0.067 12.8 0.1 0.26 10.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) DZR PF12773.2 gi|148642951|ref|YP_001273464.1| - 0.13 12.1 1.4 0.26 11.1 1.0 1.5 1 0 0 1 1 1 0 Double zinc ribbon RecR PF02132.10 gi|148642951|ref|YP_001273464.1| - 0.13 11.6 0.2 2.4 7.6 0.0 2.4 2 0 0 2 2 2 0 RecR protein Ecm33 PF12454.3 gi|148642951|ref|YP_001273464.1| - 0.15 11.9 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 GPI-anchored cell wall organization protein zinc_ribbon_2 PF13240.1 gi|148642951|ref|YP_001273464.1| - 0.53 9.8 6.1 8.8 5.9 4.0 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|148642951|ref|YP_001273464.1| - 1.3 9.0 6.6 0.2 11.6 1.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|148642951|ref|YP_001273464.1| - 1.5 8.4 7.1 6.3 6.5 0.2 3.5 2 1 1 3 3 3 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|148642952|ref|YP_001273465.1| - 2.3e-12 46.5 22.9 7e-08 32.1 9.5 1.8 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|148642952|ref|YP_001273465.1| - 4.3e-09 35.5 19.1 5.6e-07 28.8 2.6 2.6 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148642952|ref|YP_001273465.1| - 5.2e-09 35.0 18.0 9.1e-07 27.8 3.9 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|148642952|ref|YP_001273465.1| - 7.7e-05 22.2 13.6 0.0011 18.6 3.2 3.3 3 0 0 3 3 3 2 Uncharacterised protein family UPF0547 TauE PF01925.14 gi|148642952|ref|YP_001273465.1| - 0.014 14.8 0.1 0.016 14.6 0.1 1.1 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE zf-RanBP PF00641.13 gi|148642952|ref|YP_001273465.1| - 0.042 12.9 0.9 0.042 12.9 0.6 2.5 3 0 0 3 3 2 0 Zn-finger in Ran binding protein and others Rax2 PF12768.2 gi|148642952|ref|YP_001273465.1| - 0.068 12.3 0.2 0.18 11.0 0.0 1.6 2 0 0 2 2 2 0 Cortical protein marker for cell polarity GNVR PF13807.1 gi|148642952|ref|YP_001273465.1| - 0.13 12.0 0.1 0.29 10.9 0.1 1.6 1 1 0 1 1 1 0 G-rich domain on putative tyrosine kinase DUF3902 PF13042.1 gi|148642952|ref|YP_001273465.1| - 0.18 11.0 4.2 0.5 9.6 2.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3902) A2L_zn_ribbon PF08792.5 gi|148642952|ref|YP_001273465.1| - 0.31 10.5 14.0 7.3 6.1 4.4 3.9 3 1 0 3 3 3 0 A2L zinc ribbon domain Prok-RING_1 PF14446.1 gi|148642952|ref|YP_001273465.1| - 1.2 8.9 9.9 0.41 10.4 0.6 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 GFA PF04828.9 gi|148642952|ref|YP_001273465.1| - 1.8 8.5 10.1 9.6 6.2 7.0 2.4 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme DUF4187 PF13821.1 gi|148642952|ref|YP_001273465.1| - 3.9 7.1 7.8 0.4 10.3 0.7 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4187) zf-DHHC PF01529.15 gi|148642952|ref|YP_001273465.1| - 8.2 5.7 11.6 12 5.2 0.2 2.6 2 1 0 2 2 2 0 DHHC palmitoyltransferase Acetyltransf_1 PF00583.19 gi|148642953|ref|YP_001273466.1| - 4.3e-17 61.9 0.0 6.7e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|148642953|ref|YP_001273466.1| - 1.6e-13 50.6 0.3 2.2e-13 50.1 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|148642953|ref|YP_001273466.1| - 2.3e-12 47.1 0.8 2.6e-12 46.9 0.6 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|148642953|ref|YP_001273466.1| - 6.9e-08 32.6 0.0 8.5e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|148642953|ref|YP_001273466.1| - 1.1e-05 25.1 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|148642953|ref|YP_001273466.1| - 3.4e-05 24.0 0.1 5.8e-05 23.2 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|148642953|ref|YP_001273466.1| - 0.00012 21.9 0.0 0.00024 21.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|148642953|ref|YP_001273466.1| - 0.0031 17.3 0.0 0.013 15.3 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3052 PF11253.3 gi|148642953|ref|YP_001273466.1| - 0.058 12.9 0.0 0.083 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3052) DUF1836 PF08876.6 gi|148642953|ref|YP_001273466.1| - 0.08 12.7 0.3 0.16 11.7 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1836) UPF0146 PF03686.8 gi|148642954|ref|YP_001273467.1| - 3.9e-31 107.4 0.1 4.4e-31 107.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) E1-E2_ATPase PF00122.15 gi|148642955|ref|YP_001273468.1| - 1.5e-75 253.2 7.9 1.5e-75 253.2 5.4 3.5 3 1 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|148642955|ref|YP_001273468.1| - 2.7e-42 144.3 9.8 2.7e-42 144.3 6.8 2.3 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|148642955|ref|YP_001273468.1| - 5.2e-37 128.3 0.2 9.9e-37 127.4 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|148642955|ref|YP_001273468.1| - 9.3e-22 76.8 0.0 2.8e-21 75.2 0.0 1.9 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Cation_ATPase_N PF00690.21 gi|148642955|ref|YP_001273468.1| - 1e-18 66.5 0.4 2.5e-18 65.3 0.3 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|148642955|ref|YP_001273468.1| - 1.2e-14 54.9 0.9 4.9e-14 52.9 0.6 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|148642955|ref|YP_001273468.1| - 1e-05 25.2 1.3 1e-05 25.2 0.9 3.6 3 1 1 4 4 4 1 haloacid dehalogenase-like hydrolase DUF912 PF06024.7 gi|148642955|ref|YP_001273468.1| - 0.49 10.4 6.7 4.7 7.3 0.1 3.6 3 0 0 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DUF2116 PF09889.4 gi|148642955|ref|YP_001273468.1| - 1 9.2 4.7 60 3.5 0.0 3.9 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) CbiJ PF02571.9 gi|148642956|ref|YP_001273469.1| - 2.9e-49 167.6 0.0 3.2e-49 167.5 0.0 1.0 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK Ribosomal_S10 PF00338.17 gi|148642957|ref|YP_001273470.1| - 7.1e-29 99.5 0.0 7.8e-29 99.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|148642958|ref|YP_001273471.1| - 2.9e-61 206.2 0.1 4.5e-61 205.5 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|148642958|ref|YP_001273471.1| - 1.3e-30 105.5 0.4 4.2e-30 103.8 0.1 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|148642958|ref|YP_001273471.1| - 8.4e-17 61.0 1.2 1.8e-16 59.9 0.9 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|148642958|ref|YP_001273471.1| - 4.9e-07 29.7 0.0 1.1e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|148642958|ref|YP_001273471.1| - 6.3e-05 22.5 1.7 0.0001 21.8 0.2 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 FeoB_N PF02421.13 gi|148642958|ref|YP_001273471.1| - 0.0074 15.5 0.8 0.17 11.1 0.1 2.9 2 1 0 2 2 2 1 Ferrous iron transport protein B Gtr1_RagA PF04670.7 gi|148642958|ref|YP_001273471.1| - 0.012 14.7 0.0 0.11 11.6 0.0 2.0 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region ATP_bind_1 PF03029.12 gi|148642958|ref|YP_001273471.1| - 0.042 13.3 0.1 0.16 11.4 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|148642958|ref|YP_001273471.1| - 0.047 13.1 0.2 0.71 9.3 0.1 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Septin PF00735.13 gi|148642958|ref|YP_001273471.1| - 0.075 12.0 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Septin SRPRB PF09439.5 gi|148642958|ref|YP_001273471.1| - 0.084 12.0 0.1 0.31 10.2 0.1 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|148642958|ref|YP_001273471.1| - 0.092 13.2 0.1 0.41 11.1 0.0 2.2 1 1 1 2 2 2 0 Miro-like protein Dynamin_N PF00350.18 gi|148642958|ref|YP_001273471.1| - 0.092 12.5 0.1 4.8 6.9 0.0 2.3 1 1 1 2 2 2 0 Dynamin family GTP_EFTU PF00009.22 gi|148642959|ref|YP_001273472.1| - 3.4e-63 212.5 0.1 5.4e-63 211.8 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|148642959|ref|YP_001273472.1| - 4e-27 94.1 0.0 1.3e-26 92.4 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|148642959|ref|YP_001273472.1| - 5e-24 83.9 0.7 1.1e-23 82.8 0.5 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|148642959|ref|YP_001273472.1| - 1.3e-22 79.4 0.1 7.8e-22 76.9 0.0 2.5 3 0 0 3 3 3 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|148642959|ref|YP_001273472.1| - 9.1e-11 41.7 1.0 2.7e-10 40.1 0.7 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 DUF4473 PF14747.1 gi|148642959|ref|YP_001273472.1| - 0.036 14.2 0.3 0.27 11.4 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) Ribosomal_S7 PF00177.16 gi|148642960|ref|YP_001273473.1| - 1.2e-43 148.1 2.9 1.4e-43 148.0 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|148642961|ref|YP_001273474.1| - 1.1e-38 131.3 0.2 1.2e-38 131.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 MCR_alpha_N PF02745.10 gi|148642962|ref|YP_001273475.1| - 6.9e-149 494.2 0.1 9.5e-149 493.8 0.0 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|148642962|ref|YP_001273475.1| - 8.7e-64 213.2 2.3 5.9e-63 210.5 1.5 2.3 2 0 0 2 2 2 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_beta_N PF02783.10 gi|148642962|ref|YP_001273475.1| - 0.062 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain PNK3P PF08645.6 gi|148642962|ref|YP_001273475.1| - 0.12 11.8 0.4 0.25 10.7 0.3 1.5 1 0 0 1 1 1 0 Polynucleotide kinase 3 phosphatase MCR_gamma PF02240.11 gi|148642963|ref|YP_001273476.1| - 9.9e-135 447.3 3.1 1.1e-134 447.1 2.2 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_D PF02505.9 gi|148642964|ref|YP_001273477.1| - 1e-52 177.7 0.1 1.2e-52 177.5 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.13 gi|148642965|ref|YP_001273478.1| - 6e-139 461.4 7.0 7.7e-139 461.1 4.9 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|148642965|ref|YP_001273478.1| - 2.6e-80 268.1 0.6 5.6e-80 267.1 0.4 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain KH_2 PF07650.12 gi|148642966|ref|YP_001273479.1| - 1.1e-18 66.5 6.3 5.2e-15 54.7 0.2 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|148642966|ref|YP_001273479.1| - 2.8e-12 46.2 0.2 2.8e-12 46.2 0.1 2.3 2 1 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|148642966|ref|YP_001273479.1| - 1.9e-05 24.2 2.0 0.0027 17.3 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|148642966|ref|YP_001273479.1| - 0.0038 16.8 6.6 0.016 14.8 0.4 3.1 2 1 2 4 4 4 1 KH domain Vps16_N PF04841.8 gi|148642966|ref|YP_001273479.1| - 0.013 14.0 0.1 0.014 13.9 0.1 1.1 1 0 0 1 1 1 0 Vps16, N-terminal region KH_3 PF13014.1 gi|148642966|ref|YP_001273479.1| - 0.046 13.3 3.8 0.89 9.2 0.0 3.4 4 0 0 4 4 4 0 KH domain DUF3739 PF12545.3 gi|148642966|ref|YP_001273479.1| - 0.13 12.4 1.9 0.18 11.9 1.3 1.3 1 0 0 1 1 1 0 Filamentous haemagglutinin family outer membrane protein PRC PF05239.11 gi|148642966|ref|YP_001273479.1| - 0.41 10.5 2.6 2.4 8.0 0.3 2.5 2 1 0 2 2 2 0 PRC-barrel domain Ribosomal_L7Ae PF01248.21 gi|148642967|ref|YP_001273480.1| - 3.3e-17 61.7 0.0 3.5e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.12 gi|148642968|ref|YP_001273481.1| - 6.9e-54 182.9 2.2 1.9e-53 181.5 1.5 1.7 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 SicP-binding PF09119.5 gi|148642968|ref|YP_001273481.1| - 0.077 12.7 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 SicP binding Imm45 PF15603.1 gi|148642968|ref|YP_001273481.1| - 0.14 12.3 2.7 7.3 6.8 0.0 3.5 4 0 0 4 4 4 0 Immunity protein 45 RNA_pol_Rpb1_1 PF04997.7 gi|148642969|ref|YP_001273482.1| - 7.9e-92 308.0 0.0 3.7e-91 305.8 0.0 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|148642969|ref|YP_001273482.1| - 1.9e-68 229.5 0.1 4.3e-68 228.4 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|148642969|ref|YP_001273482.1| - 4.8e-33 114.1 0.0 1.8e-32 112.2 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|148642969|ref|YP_001273482.1| - 2.6e-29 101.1 0.0 8e-29 99.5 0.0 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|148642969|ref|YP_001273482.1| - 8.7e-28 97.3 0.2 3.1e-27 95.5 0.0 2.0 2 1 0 2 2 2 1 RNA polymerase Rpb1, domain 5 DUF87 PF01935.12 gi|148642969|ref|YP_001273482.1| - 0.091 12.5 1.1 0.59 9.9 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF87 RNA_pol_Rpb2_6 PF00562.23 gi|148642970|ref|YP_001273483.1| - 2.2e-127 425.0 0.0 2.7e-127 424.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|148642970|ref|YP_001273483.1| - 3.4e-28 97.7 0.0 6.3e-28 96.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|148642970|ref|YP_001273483.1| - 6.7e-24 83.4 0.1 1.4e-23 82.4 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|148642970|ref|YP_001273483.1| - 4.7e-16 58.4 2.1 1.1e-15 57.2 1.5 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.4 gi|148642970|ref|YP_001273483.1| - 0.0032 17.2 0.6 0.027 14.2 0.3 2.4 2 0 0 2 2 2 1 RNA polymerase beta subunit external 1 domain Auto_anti-p27 PF06677.7 gi|148642970|ref|YP_001273483.1| - 0.034 13.9 1.4 0.085 12.6 1.0 1.7 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|148642970|ref|YP_001273483.1| - 0.052 12.7 1.6 0.12 11.6 1.1 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zf-CHY PF05495.7 gi|148642970|ref|YP_001273483.1| - 0.072 13.2 0.8 0.15 12.2 0.5 1.5 1 0 0 1 1 1 0 CHY zinc finger DZR PF12773.2 gi|148642970|ref|YP_001273483.1| - 0.1 12.4 0.2 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon RNA_pol_Rpb2_1 PF04563.10 gi|148642971|ref|YP_001273484.1| - 1.6e-56 190.4 0.3 2e-56 190.1 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.11 gi|148642971|ref|YP_001273484.1| - 1.1e-25 89.1 0.0 2e-25 88.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.9 gi|148642971|ref|YP_001273484.1| - 9.9e-25 87.0 1.3 1.6e-24 86.3 0.9 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb5_C PF01191.14 gi|148642972|ref|YP_001273485.1| - 2.6e-27 94.2 0.9 2.8e-27 94.0 0.6 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain TPR_11 PF13414.1 gi|148642974|ref|YP_001273487.1| - 2.4e-18 65.5 4.9 2.4e-10 39.8 0.2 2.3 1 1 1 2 2 2 2 TPR repeat TPR_1 PF00515.23 gi|148642974|ref|YP_001273487.1| - 6.5e-14 50.8 6.0 4.2e-08 32.4 0.1 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|148642974|ref|YP_001273487.1| - 3.1e-12 45.4 2.3 6.6e-06 25.6 0.0 3.6 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|148642974|ref|YP_001273487.1| - 1.2e-11 44.3 0.1 3.3e-06 26.9 0.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|148642974|ref|YP_001273487.1| - 1.6e-11 43.0 6.8 2.4e-07 30.0 0.0 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|148642974|ref|YP_001273487.1| - 2.1e-08 34.6 0.0 1.3e-06 28.9 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|148642974|ref|YP_001273487.1| - 9.3e-08 32.1 0.2 1.6e-07 31.3 0.1 1.4 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|148642974|ref|YP_001273487.1| - 2.7e-07 30.8 0.0 0.00033 20.9 0.0 2.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|148642974|ref|YP_001273487.1| - 1.1e-05 25.2 1.0 0.017 15.3 0.0 3.2 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|148642974|ref|YP_001273487.1| - 2e-05 24.0 0.1 0.0019 17.8 0.0 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|148642974|ref|YP_001273487.1| - 5.1e-05 23.4 0.5 0.02 15.3 0.0 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_3 PF07720.7 gi|148642974|ref|YP_001273487.1| - 8.1e-05 22.3 4.3 0.15 11.9 0.1 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|148642974|ref|YP_001273487.1| - 8.9e-05 22.7 0.0 0.16 12.7 0.0 3.1 1 1 2 3 3 3 1 Tetratricopeptide repeat Sel1 PF08238.7 gi|148642974|ref|YP_001273487.1| - 0.00021 21.7 1.3 2 9.1 0.0 3.7 3 0 0 3 3 3 1 Sel1 repeat TPR_10 PF13374.1 gi|148642974|ref|YP_001273487.1| - 0.0011 18.8 0.0 0.05 13.5 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat MIT PF04212.13 gi|148642974|ref|YP_001273487.1| - 0.021 14.7 0.0 1.8 8.4 0.0 2.3 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain HK PF02110.10 gi|148642976|ref|YP_001273489.1| - 8.3e-75 251.1 7.6 9.8e-75 250.8 5.2 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|148642976|ref|YP_001273489.1| - 0.0015 17.8 4.9 0.0042 16.3 3.4 1.6 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase TMP-TENI PF02581.12 gi|148642977|ref|YP_001273490.1| - 6.1e-69 230.7 1.1 7e-69 230.5 0.8 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI QRPTase_C PF01729.14 gi|148642977|ref|YP_001273490.1| - 1.7e-05 24.4 0.6 1.7e-05 24.4 0.4 1.7 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Spore_GerAC PF05504.6 gi|148642977|ref|YP_001273490.1| - 6.9e-05 22.6 0.8 0.00047 19.9 0.6 1.9 1 1 0 1 1 1 1 Spore germination B3/ GerAC like, C-terminal NMO PF03060.10 gi|148642977|ref|YP_001273490.1| - 0.00038 19.6 2.9 0.0013 18.0 2.0 1.7 1 1 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.9 gi|148642977|ref|YP_001273490.1| - 0.0037 16.3 2.6 0.0052 15.8 0.1 2.0 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|148642977|ref|YP_001273490.1| - 0.0048 15.8 0.7 0.0082 15.1 0.3 1.5 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|148642977|ref|YP_001273490.1| - 0.0063 15.5 0.1 0.014 14.4 0.1 1.5 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|148642977|ref|YP_001273490.1| - 0.015 14.6 0.8 0.051 12.8 0.2 2.0 1 1 1 2 2 2 0 Histidine biosynthesis protein PEP_mutase PF13714.1 gi|148642977|ref|YP_001273490.1| - 0.047 12.9 0.4 1.3 8.2 0.2 2.3 1 1 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Oxidored_FMN PF00724.15 gi|148642977|ref|YP_001273490.1| - 0.068 12.1 0.2 0.12 11.3 0.1 1.4 1 1 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|148642977|ref|YP_001273490.1| - 0.079 11.7 0.2 4.1 6.1 0.0 2.2 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) Ribul_P_3_epim PF00834.14 gi|148642977|ref|YP_001273490.1| - 0.082 12.0 0.1 0.19 10.8 0.1 1.6 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family PGK PF00162.14 gi|148642978|ref|YP_001273491.1| - 3.5e-122 407.6 0.5 4e-122 407.4 0.4 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase UAF_Rrn10 PF05234.6 gi|148642978|ref|YP_001273491.1| - 0.07 13.1 0.2 0.15 12.0 0.2 1.5 1 0 0 1 1 1 0 UAF complex subunit Rrn10 TIM PF00121.13 gi|148642979|ref|YP_001273492.1| - 3.4e-29 101.6 0.7 3.4e-27 95.0 0.5 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|148642979|ref|YP_001273492.1| - 1.8e-06 27.2 0.3 4e-06 26.1 0.2 1.6 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|148642979|ref|YP_001273492.1| - 0.00025 20.0 0.4 0.00047 19.1 0.2 1.5 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NMO PF03060.10 gi|148642979|ref|YP_001273492.1| - 0.00036 19.7 0.2 0.00059 19.0 0.1 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Glu_synthase PF01645.12 gi|148642979|ref|YP_001273492.1| - 0.0014 17.6 0.1 0.0028 16.6 0.1 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.16 gi|148642979|ref|YP_001273492.1| - 0.0024 17.1 0.1 0.0056 15.9 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.9 gi|148642979|ref|YP_001273492.1| - 0.02 13.8 1.6 0.055 12.4 1.1 1.8 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|148642979|ref|YP_001273492.1| - 0.039 13.2 1.1 0.056 12.6 0.2 1.7 2 0 0 2 2 2 0 PcrB family IGPS PF00218.16 gi|148642979|ref|YP_001273492.1| - 0.063 12.3 0.0 0.085 11.8 0.0 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PRCC PF10253.4 gi|148642980|ref|YP_001273493.1| - 0.04 14.6 0.7 0.043 14.5 0.5 1.1 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting Big_1 PF02369.11 gi|148642981|ref|YP_001273494.1| - 9.6e-05 22.2 2.3 0.00012 21.8 1.1 1.5 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 1) DUF1628 PF07790.6 gi|148642981|ref|YP_001273494.1| - 0.00015 22.4 0.3 0.00033 21.3 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF4198 PF10670.4 gi|148642981|ref|YP_001273494.1| - 0.0028 17.6 0.0 0.0045 17.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.1 gi|148642981|ref|YP_001273494.1| - 0.054 13.5 0.4 0.12 12.4 0.3 1.6 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain Big_3_4 PF13754.1 gi|148642981|ref|YP_001273494.1| - 0.058 13.7 3.7 11 6.4 0.0 3.2 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 3) Cna_B PF05738.8 gi|148642981|ref|YP_001273494.1| - 1.4 8.7 9.3 0.58 9.9 2.7 2.9 1 1 1 2 2 2 0 Cna protein B-type domain Wyosine_form PF08608.7 gi|148642982|ref|YP_001273495.1| - 1.4e-20 73.1 0.4 8.1e-20 70.7 0.0 2.4 3 0 0 3 3 3 1 Wyosine base formation Radical_SAM PF04055.16 gi|148642982|ref|YP_001273495.1| - 1.5e-15 57.7 0.0 4.8e-15 56.1 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|148642982|ref|YP_001273495.1| - 0.0029 17.6 2.7 0.012 15.6 1.9 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain FMN_red PF03358.10 gi|148642983|ref|YP_001273496.1| - 2.5e-20 72.5 0.0 3.1e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|148642983|ref|YP_001273496.1| - 3.5e-11 42.9 0.0 4.2e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|148642983|ref|YP_001273496.1| - 0.0039 17.1 0.0 0.013 15.4 0.0 1.9 2 1 0 2 2 2 1 Flavodoxin domain ATP-grasp_2 PF08442.5 gi|148642984|ref|YP_001273497.1| - 5e-62 208.8 1.4 6.3e-62 208.5 0.2 1.6 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|148642984|ref|YP_001273497.1| - 2.9e-15 56.1 0.5 6.2e-15 55.1 0.4 1.5 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|148642984|ref|YP_001273497.1| - 3.9e-11 42.5 2.7 6.5e-10 38.5 0.3 2.9 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|148642984|ref|YP_001273497.1| - 2.1e-08 33.7 0.1 3.5e-08 33.0 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.14 gi|148642984|ref|YP_001273497.1| - 3e-05 23.6 0.2 5.9e-05 22.7 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.1 gi|148642984|ref|YP_001273497.1| - 0.0043 16.7 0.0 0.0085 15.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Hydrolase PF00702.21 gi|148642984|ref|YP_001273497.1| - 0.0097 16.3 0.1 0.015 15.6 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase POR PF01558.13 gi|148642985|ref|YP_001273498.1| - 5.5e-37 127.3 0.5 6.5e-37 127.0 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Sigma70_r1_1 PF03979.9 gi|148642985|ref|YP_001273498.1| - 0.16 11.9 0.7 1.4 8.8 0.2 2.2 1 1 1 2 2 2 0 Sigma-70 factor, region 1.1 TPP_enzyme_C PF02775.16 gi|148642986|ref|YP_001273499.1| - 3.6e-35 120.7 0.1 5.5e-35 120.2 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|148642987|ref|YP_001273500.1| - 5e-74 248.6 0.0 6.7e-74 248.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|148642987|ref|YP_001273500.1| - 3.9e-07 30.0 0.0 9.6e-07 28.7 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|148642987|ref|YP_001273500.1| - 1e-05 25.1 0.1 1.8e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR PF01558.13 gi|148642987|ref|YP_001273500.1| - 0.055 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase Yopt PF09467.5 gi|148642987|ref|YP_001273500.1| - 0.48 10.3 0.1 0.48 10.3 0.1 2.0 3 0 0 3 3 3 0 Hypothetical protein Yopt Fer4 PF00037.22 gi|148642988|ref|YP_001273501.1| - 2.1e-12 46.0 12.3 5.3e-06 25.8 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148642988|ref|YP_001273501.1| - 4.3e-12 46.2 21.2 2.1e-08 34.4 7.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148642988|ref|YP_001273501.1| - 3.9e-10 39.3 25.6 2.8e-08 33.4 9.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148642988|ref|YP_001273501.1| - 4.2e-10 38.9 10.1 1.6e-05 24.5 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|148642988|ref|YP_001273501.1| - 5.8e-10 38.5 12.5 3.2e-06 26.7 2.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148642988|ref|YP_001273501.1| - 2.2e-09 37.4 8.9 3.2e-09 36.9 6.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148642988|ref|YP_001273501.1| - 4.9e-08 33.6 8.5 0.00097 19.8 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|148642988|ref|YP_001273501.1| - 1.7e-07 30.9 11.3 7.1e-07 28.9 7.9 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148642988|ref|YP_001273501.1| - 1.3e-05 25.0 14.4 0.0068 16.6 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|148642988|ref|YP_001273501.1| - 3.8e-05 24.1 10.1 0.0083 16.6 7.0 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|148642988|ref|YP_001273501.1| - 0.00016 21.9 16.6 0.04 14.4 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|148642988|ref|YP_001273501.1| - 0.00016 21.5 10.6 0.00036 20.4 7.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|148642988|ref|YP_001273501.1| - 0.0002 21.6 7.4 0.034 14.5 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|148642988|ref|YP_001273501.1| - 0.00047 20.5 7.6 0.082 13.3 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148642988|ref|YP_001273501.1| - 0.001 19.3 14.5 0.14 12.5 10.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|148642988|ref|YP_001273501.1| - 0.0079 16.0 3.9 0.24 11.2 0.1 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain TNFR_c6 PF00020.13 gi|148642988|ref|YP_001273501.1| - 1.8 8.7 7.3 3.9 7.6 0.6 2.4 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Fumerase_C PF05683.7 gi|148642989|ref|YP_001273502.1| - 2.9e-26 91.8 0.1 5e-26 91.1 0.0 1.3 1 1 0 1 1 1 1 Fumarase C-terminus PTS_EIIA_2 PF00359.17 gi|148642989|ref|YP_001273502.1| - 0.0036 17.0 0.5 0.023 14.4 0.1 2.0 1 1 1 2 2 2 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DUF2703 PF10865.3 gi|148642989|ref|YP_001273502.1| - 0.056 13.3 0.0 0.1 12.5 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF2703) FKBP_C PF00254.23 gi|148642990|ref|YP_001273503.1| - 1.6e-15 56.8 0.2 8.5e-15 54.5 0.0 2.3 2 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase HCNGP PF07818.8 gi|148642990|ref|YP_001273503.1| - 0.12 12.3 1.1 1.2 9.2 0.3 2.3 2 0 0 2 2 2 0 HCNGP-like protein DUF763 PF05559.6 gi|148642991|ref|YP_001273504.1| - 1e-131 438.6 0.0 1.2e-131 438.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HHH PF00633.18 gi|148642991|ref|YP_001273504.1| - 0.002 17.7 0.3 0.0056 16.3 0.1 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif Trm56 PF01994.11 gi|148642992|ref|YP_001273505.1| - 8.5e-46 154.6 0.6 1.1e-45 154.2 0.4 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SpoU_methylase PF00588.14 gi|148642992|ref|YP_001273505.1| - 0.00031 20.6 0.0 0.00042 20.2 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family CobS PF02654.10 gi|148642993|ref|YP_001273506.1| - 2.9e-52 177.5 19.2 3.4e-52 177.3 13.3 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase Colicin PF01024.14 gi|148642993|ref|YP_001273506.1| - 5.9 6.4 9.8 0.77 9.3 3.7 1.7 2 0 0 2 2 2 0 Colicin pore forming domain Peptidase_M50 PF02163.17 gi|148642993|ref|YP_001273506.1| - 8.4 5.2 6.9 38 3.1 4.8 2.1 1 1 0 1 1 1 0 Peptidase family M50 PgpA PF04608.8 gi|148642994|ref|YP_001273507.1| - 2.2e-12 46.9 0.3 4.2e-12 46.0 0.2 1.5 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CbiZ PF01955.13 gi|148642994|ref|YP_001273507.1| - 0.0096 15.7 0.1 0.023 14.4 0.0 1.7 2 0 0 2 2 2 1 Adenosylcobinamide amidohydrolase DUF2120 PF09893.4 gi|148642994|ref|YP_001273507.1| - 0.35 10.8 2.9 0.33 10.9 0.4 2.1 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) DUF111 PF01969.12 gi|148642995|ref|YP_001273508.1| - 8.4e-130 432.9 0.1 9.5e-130 432.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 QueC PF06508.8 gi|148642996|ref|YP_001273509.1| - 1e-66 224.2 0.1 1.1e-66 224.0 0.1 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|148642996|ref|YP_001273509.1| - 2.8e-06 26.9 0.2 0.018 14.4 0.0 2.6 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|148642996|ref|YP_001273509.1| - 6.4e-06 25.8 0.0 9.4e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|148642996|ref|YP_001273509.1| - 0.00027 19.9 0.0 0.001 18.0 0.0 1.8 2 0 0 2 2 2 1 NAD synthase ATP_bind_3 PF01171.15 gi|148642996|ref|YP_001273509.1| - 0.0039 16.7 0.0 0.025 14.0 0.0 2.0 2 0 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.11 gi|148642996|ref|YP_001273509.1| - 0.02 13.4 0.0 0.029 12.9 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase HD PF01966.17 gi|148642997|ref|YP_001273510.1| - 1.9e-06 27.8 2.0 2.9e-06 27.2 1.1 1.7 2 0 0 2 2 2 1 HD domain Wzy_C PF04932.10 gi|148642998|ref|YP_001273511.1| - 0.033 13.9 0.2 0.034 13.9 0.1 1.1 1 0 0 1 1 1 0 O-Antigen ligase PYC_OADA PF02436.13 gi|148642999|ref|YP_001273512.1| - 4.3e-65 218.8 0.5 9.5e-65 217.7 0.2 1.7 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|148642999|ref|YP_001273512.1| - 1.5e-43 149.2 0.0 2e-43 148.7 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|148642999|ref|YP_001273512.1| - 3.3e-19 68.2 8.2 4.6e-19 67.8 4.7 1.9 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|148642999|ref|YP_001273512.1| - 3.2e-07 29.9 1.7 9.4e-05 22.0 0.2 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_2 PF12700.2 gi|148642999|ref|YP_001273512.1| - 9e-06 25.0 2.7 0.01 14.9 0.3 2.4 1 1 1 2 2 2 2 HlyD family secretion protein HlyD PF00529.15 gi|148642999|ref|YP_001273512.1| - 3.2e-05 23.4 2.0 0.0041 16.4 0.1 2.4 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|148642999|ref|YP_001273512.1| - 0.0058 16.9 1.7 0.21 11.9 0.0 3.2 3 0 0 3 3 3 1 HlyD family secretion protein DUF2118 PF09891.4 gi|148642999|ref|YP_001273512.1| - 0.0092 15.6 0.6 0.029 14.0 0.4 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) RnfC_N PF13375.1 gi|148642999|ref|YP_001273512.1| - 0.019 14.6 3.0 0.028 14.1 0.4 2.4 3 0 0 3 3 3 0 RnfC Barrel sandwich hybrid domain GCV_H PF01597.14 gi|148642999|ref|YP_001273512.1| - 0.037 13.6 3.2 0.071 12.8 1.0 2.2 1 1 1 2 2 2 0 Glycine cleavage H-protein PYNP_C PF07831.8 gi|148642999|ref|YP_001273512.1| - 0.046 13.1 0.7 3.3 7.2 0.1 2.5 1 1 1 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain AstE_AspA PF04952.9 gi|148642999|ref|YP_001273512.1| - 0.11 11.3 0.2 4.5 6.0 0.1 2.2 2 0 0 2 2 2 0 Succinylglutamate desuccinylase / Aspartoacylase family NAD_binding_5 PF07994.7 gi|148643000|ref|YP_001273513.1| - 9.7e-57 192.6 0.0 2.6e-56 191.3 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|148643000|ref|YP_001273513.1| - 1.4e-34 118.3 0.0 2.3e-34 117.5 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase UbiA PF01040.13 gi|148643001|ref|YP_001273514.1| - 5.4e-38 130.6 21.2 6.7e-38 130.3 14.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family FxsA PF04186.8 gi|148643001|ref|YP_001273514.1| - 0.09 12.3 0.2 0.09 12.3 0.1 2.4 3 0 0 3 3 3 0 FxsA cytoplasmic membrane protein LRR19-TM PF15176.1 gi|148643001|ref|YP_001273514.1| - 0.32 10.7 0.0 0.32 10.7 0.0 3.4 3 1 1 4 4 4 0 Leucine-rich repeat family 19 TM domain PMT_2 PF13231.1 gi|148643002|ref|YP_001273515.1| - 1.8e-33 115.6 19.4 1.8e-33 115.6 13.5 3.4 3 1 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase NERD PF08378.6 gi|148643003|ref|YP_001273516.1| - 0.00037 20.7 0.3 0.0011 19.2 0.2 1.8 1 0 0 1 1 1 1 Nuclease-related domain SprT-like PF10263.4 gi|148643003|ref|YP_001273516.1| - 0.0029 17.2 2.5 0.092 12.4 0.1 2.6 2 0 0 2 2 2 1 SprT-like family HypA PF01155.14 gi|148643003|ref|YP_001273516.1| - 0.006 16.2 5.3 0.98 9.1 1.1 2.6 2 0 0 2 2 2 2 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|148643003|ref|YP_001273516.1| - 0.01 15.3 11.3 0.089 12.3 2.7 2.9 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|148643003|ref|YP_001273516.1| - 0.011 15.4 11.3 0.07 12.8 2.6 2.8 2 0 0 2 2 2 0 zinc-ribbon domain Cytochrom_c3_2 PF14537.1 gi|148643003|ref|YP_001273516.1| - 0.019 15.2 4.9 4.2 7.7 4.7 2.6 1 1 1 2 2 2 0 Cytochrome c3 DZR PF12773.2 gi|148643003|ref|YP_001273516.1| - 0.024 14.4 5.2 2 8.3 0.9 2.5 2 0 0 2 2 2 0 Double zinc ribbon FlhC PF05280.6 gi|148643003|ref|YP_001273516.1| - 0.1 12.0 3.6 3.2 7.1 0.0 2.4 2 0 0 2 2 2 0 Flagellar transcriptional activator (FlhC) COX5B PF01215.14 gi|148643003|ref|YP_001273516.1| - 0.17 11.5 1.1 2.3 7.9 0.0 2.5 2 0 0 2 2 2 0 Cytochrome c oxidase subunit Vb zf-CSL PF05207.8 gi|148643003|ref|YP_001273516.1| - 0.27 10.7 14.1 1.7 8.2 0.1 3.3 2 1 1 3 3 3 0 CSL zinc finger RNHCP PF12647.2 gi|148643003|ref|YP_001273516.1| - 0.77 9.6 3.9 1.1 9.1 2.1 1.8 1 1 0 1 1 1 0 RNHCP domain DNA_RNApol_7kD PF03604.8 gi|148643003|ref|YP_001273516.1| - 0.82 9.1 11.3 0.65 9.5 0.7 3.1 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ima1_N PF09779.4 gi|148643003|ref|YP_001273516.1| - 0.97 9.9 12.9 0.72 10.3 0.5 3.1 3 0 0 3 3 2 0 Ima1 N-terminal domain zf-HYPF PF07503.7 gi|148643003|ref|YP_001273516.1| - 1 8.8 8.7 0.51 9.8 0.1 3.8 4 0 0 4 4 4 0 HypF finger Lar_restr_allev PF14354.1 gi|148643003|ref|YP_001273516.1| - 1.2 9.5 10.3 2.1 8.6 1.6 3.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar YycI PF09648.5 gi|148643003|ref|YP_001273516.1| - 1.2 8.5 21.3 0.41 10.0 0.4 3.1 3 0 0 3 3 3 0 YycH protein Zn-ribbon_8 PF09723.5 gi|148643003|ref|YP_001273516.1| - 1.6 8.7 15.5 2.9 7.9 0.1 4.3 3 1 0 4 4 4 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|148643003|ref|YP_001273516.1| - 2 8.2 5.6 6.8 6.4 0.2 3.1 2 2 0 2 2 2 0 Nudix N-terminal Elf1 PF05129.8 gi|148643003|ref|YP_001273516.1| - 2.3 7.9 11.0 0.86 9.3 0.6 3.5 1 1 2 3 3 3 0 Transcription elongation factor Elf1 like IBR PF01485.16 gi|148643003|ref|YP_001273516.1| - 2.5 8.0 7.6 12 5.8 1.5 2.8 2 0 0 2 2 2 0 IBR domain Zn_ribbon_recom PF13408.1 gi|148643003|ref|YP_001273516.1| - 3.3 8.0 7.1 22 5.3 0.3 3.1 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_2 PF13240.1 gi|148643003|ref|YP_001273516.1| - 5.2 6.6 11.7 2.7 7.5 1.8 3.2 2 2 1 3 3 3 0 zinc-ribbon domain ADK_lid PF05191.9 gi|148643003|ref|YP_001273516.1| - 5.6 6.7 11.8 0.54 9.9 1.7 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid CTP_transf_3 PF02348.14 gi|148643004|ref|YP_001273517.1| - 8.1e-25 87.7 0.2 1.9e-24 86.5 0.2 1.6 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.2 gi|148643004|ref|YP_001273517.1| - 5.9e-06 26.4 0.0 2.5e-05 24.3 0.0 2.0 2 1 0 2 2 2 1 MobA-like NTP transferase domain Glyco_trans_1_3 PF13528.1 gi|148643004|ref|YP_001273517.1| - 0.0022 17.2 0.1 0.013 14.7 0.0 2.3 2 1 1 3 3 3 1 Glycosyl transferase family 1 Hpr_kinase_N PF02603.11 gi|148643004|ref|YP_001273517.1| - 0.037 13.7 0.1 16 5.2 0.0 3.0 2 0 0 2 2 2 0 HPr Serine kinase N terminus HypD PF01924.11 gi|148643005|ref|YP_001273518.1| - 8.8e-143 475.3 0.0 9.8e-143 475.1 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Hydrolase_3 PF08282.7 gi|148643006|ref|YP_001273519.1| - 5.4e-34 117.9 9.8 8.7e-23 81.1 3.9 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|148643006|ref|YP_001273519.1| - 1.1e-12 47.7 0.2 6.5e-11 41.9 0.1 2.3 2 1 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|148643006|ref|YP_001273519.1| - 1.2e-07 32.4 2.7 0.0062 16.9 0.5 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|148643006|ref|YP_001273519.1| - 4.1e-06 27.0 2.9 0.00011 22.4 0.1 2.5 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|148643006|ref|YP_001273519.1| - 0.00094 19.0 0.1 0.0081 16.0 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PmbA_TldD PF01523.11 gi|148643007|ref|YP_001273520.1| - 2.2e-69 233.9 2.1 2.7e-69 233.6 1.5 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Spore_coat_CotO PF14153.1 gi|148643007|ref|YP_001273520.1| - 0.0031 16.9 0.0 0.0045 16.4 0.0 1.3 1 0 0 1 1 1 1 Spore coat protein CotO HTH_WhiA PF02650.9 gi|148643008|ref|YP_001273521.1| - 0.027 14.8 1.4 0.069 13.5 1.0 1.7 1 1 0 1 1 1 0 WhiA C-terminal HTH domain HSCB_C PF07743.8 gi|148643008|ref|YP_001273521.1| - 0.071 13.5 0.5 0.078 13.4 0.3 1.2 1 0 0 1 1 1 0 HSCB C-terminal oligomerisation domain GrpE PF01025.14 gi|148643008|ref|YP_001273521.1| - 0.77 9.2 4.4 0.84 9.1 3.1 1.3 1 1 0 1 1 1 0 GrpE V-ATPase_G PF03179.10 gi|148643008|ref|YP_001273521.1| - 0.8 10.0 4.7 0.76 10.1 2.7 1.4 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit GyrI-like PF06445.10 gi|148643009|ref|YP_001273522.1| - 1.2e-12 48.1 0.2 3e-12 46.8 0.1 1.6 1 1 0 1 1 1 1 GyrI-like small molecule binding domain MoeA_N PF03453.12 gi|148643010|ref|YP_001273523.1| - 4.1e-46 156.2 0.1 7.3e-46 155.4 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|148643010|ref|YP_001273523.1| - 2.8e-27 94.9 0.2 4.3e-27 94.2 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|148643010|ref|YP_001273523.1| - 1.7e-15 56.7 0.0 4.5e-15 55.3 0.0 1.8 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Prosystemin PF07376.6 gi|148643010|ref|YP_001273523.1| - 0.001 18.5 0.1 0.0021 17.4 0.1 1.5 1 0 0 1 1 1 1 Prosystemin Ag332 PF04671.7 gi|148643010|ref|YP_001273523.1| - 0.052 13.3 3.1 0.16 11.7 0.1 2.7 2 0 0 2 2 2 0 Erythrocyte membrane-associated giant protein antigen 332 eIF-1a PF01176.14 gi|148643011|ref|YP_001273524.1| - 3.2e-24 84.1 0.7 4.2e-24 83.7 0.5 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|148643012|ref|YP_001273525.1| - 9.2e-56 188.1 0.6 1.4e-55 187.5 0.4 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|148643012|ref|YP_001273525.1| - 0.00018 20.6 0.0 0.045 12.8 0.0 2.2 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|148643012|ref|YP_001273525.1| - 0.0015 17.7 0.4 0.0042 16.2 0.3 1.7 1 1 0 1 1 1 1 Protein kinase domain Fructosamin_kin PF03881.9 gi|148643012|ref|YP_001273525.1| - 0.002 17.1 0.1 0.59 9.0 0.0 2.1 1 1 1 2 2 2 2 Fructosamine kinase APH PF01636.18 gi|148643012|ref|YP_001273525.1| - 0.01 15.6 0.0 0.22 11.1 0.0 2.2 1 1 1 2 2 2 0 Phosphotransferase enzyme family EamA PF00892.15 gi|148643013|ref|YP_001273526.1| - 4.6e-31 107.4 36.5 7.4e-19 68.0 7.3 2.5 1 1 2 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|148643013|ref|YP_001273526.1| - 1.6e-05 25.0 27.1 0.0018 18.4 4.8 2.8 2 1 0 2 2 2 2 Multidrug resistance efflux transporter UAA PF08449.6 gi|148643013|ref|YP_001273526.1| - 3.1e-05 23.0 24.8 3.8e-05 22.7 9.3 2.1 1 1 1 2 2 2 1 UAA transporter family Multi_Drug_Res PF00893.14 gi|148643013|ref|YP_001273526.1| - 1.8 9.0 23.5 0.33 11.4 2.0 3.6 1 1 2 3 3 3 0 Small Multidrug Resistance protein 7TMR-DISM_7TM PF07695.6 gi|148643013|ref|YP_001273526.1| - 1.9 8.1 35.3 0.71 9.4 8.7 2.4 2 1 0 2 2 2 0 7TM diverse intracellular signalling Bax1-I PF01027.15 gi|148643013|ref|YP_001273526.1| - 2 7.9 41.3 0.023 14.3 17.0 2.4 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 KH_1 PF00013.24 gi|148643014|ref|YP_001273527.1| - 3.8e-14 52.0 4.0 7.1e-08 31.9 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|148643014|ref|YP_001273527.1| - 7.7e-05 22.2 4.1 0.0046 16.5 0.2 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|148643014|ref|YP_001273527.1| - 0.0023 17.4 7.3 0.37 10.3 0.4 2.8 2 2 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|148643014|ref|YP_001273527.1| - 0.016 14.8 0.4 4.6 6.9 0.0 2.7 2 0 0 2 2 2 0 KH domain DUF2535 PF10751.4 gi|148643014|ref|YP_001273527.1| - 0.12 12.5 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2535) Topo-VIb_trans PF09239.6 gi|148643015|ref|YP_001273528.1| - 2e-62 209.4 0.0 3.9e-62 208.5 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|148643015|ref|YP_001273528.1| - 1.1e-12 47.6 0.0 2.3e-12 46.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|148643015|ref|YP_001273528.1| - 3.5e-08 33.1 0.0 8.1e-08 32.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EcKinase PF02958.15 gi|148643015|ref|YP_001273528.1| - 0.097 11.7 0.7 0.19 10.8 0.5 1.5 1 0 0 1 1 1 0 Ecdysteroid kinase PXA PF02194.10 gi|148643015|ref|YP_001273528.1| - 0.11 12.0 0.2 0.2 11.1 0.1 1.4 1 0 0 1 1 1 0 PXA domain TP6A_N PF04406.9 gi|148643016|ref|YP_001273529.1| - 1.5e-20 72.5 0.0 3e-20 71.6 0.0 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Toprim_2 PF13155.1 gi|148643016|ref|YP_001273529.1| - 0.081 13.2 0.0 0.21 11.9 0.0 1.7 1 0 0 1 1 1 0 Toprim-like DUF4399 PF14347.1 gi|148643017|ref|YP_001273530.1| - 6.4e-23 80.5 13.9 1.6e-07 31.2 0.8 4.5 2 1 2 4 4 4 4 Domain of unknown function (DUF4399) CarboxypepD_reg PF13620.1 gi|148643017|ref|YP_001273530.1| - 2.5e-14 53.0 13.2 2.7e-05 24.1 0.4 5.0 5 0 0 5 5 5 4 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|148643017|ref|YP_001273530.1| - 4.9e-11 42.4 19.9 2.1e-05 24.3 0.6 4.8 4 0 0 4 4 4 4 Bacterial Ig-like domain (group 1) Mso1_Sec1_bdg PF14475.1 gi|148643017|ref|YP_001273530.1| - 0.015 14.6 1.9 0.67 9.3 0.0 2.8 2 0 0 2 2 2 0 Sec1-binding region of Mso1 ATPase-cat_bd PF12156.3 gi|148643017|ref|YP_001273530.1| - 0.2 12.2 0.8 24 5.5 0.0 3.2 3 0 0 3 3 3 0 Putative metal-binding domain of cation transport ATPase CBM_X2 PF03442.9 gi|148643017|ref|YP_001273530.1| - 0.43 10.4 13.9 0.32 10.8 0.6 4.6 4 0 0 4 4 4 0 Carbohydrate binding domain X2 SpoIIIAH PF12685.2 gi|148643018|ref|YP_001273531.1| - 4.1e-06 26.4 0.2 4.6e-06 26.2 0.1 1.1 1 0 0 1 1 1 1 SpoIIIAH-like protein DUF1510 PF07423.6 gi|148643018|ref|YP_001273531.1| - 0.0056 16.0 0.0 0.0067 15.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) Chordopox_A13L PF05961.6 gi|148643018|ref|YP_001273531.1| - 0.036 13.9 0.4 0.052 13.4 0.3 1.2 1 0 0 1 1 1 0 Chordopoxvirus A13L protein DUF3139 PF11337.3 gi|148643018|ref|YP_001273531.1| - 0.064 13.5 0.1 0.084 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) tRNA_anti-like PF12869.2 gi|148643018|ref|YP_001273531.1| - 0.12 11.8 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 tRNA_anti-like Trns_repr_metal PF02583.12 gi|148643019|ref|YP_001273532.1| - 2e-25 88.7 0.5 2.2e-25 88.6 0.4 1.0 1 0 0 1 1 1 1 Metal-sensitive transcriptional repressor IMS PF00817.15 gi|148643019|ref|YP_001273532.1| - 0.12 12.1 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 impB/mucB/samB family E1-E2_ATPase PF00122.15 gi|148643020|ref|YP_001273533.1| - 3.8e-51 173.3 3.7 3.8e-51 173.3 2.6 2.7 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|148643020|ref|YP_001273533.1| - 8.7e-40 137.4 0.0 1.8e-39 136.4 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|148643020|ref|YP_001273533.1| - 5.3e-13 49.5 0.4 3e-12 47.0 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|148643020|ref|YP_001273533.1| - 6.8e-05 22.5 0.5 6.8e-05 22.5 0.3 2.9 3 1 0 3 3 3 1 haloacid dehalogenase-like hydrolase Sua5_yciO_yrdC PF01300.13 gi|148643020|ref|YP_001273533.1| - 0.032 13.4 0.8 0.13 11.5 0.1 2.4 3 0 0 3 3 3 0 Telomere recombination DUF2779 PF11074.3 gi|148643020|ref|YP_001273533.1| - 0.29 11.1 1.7 0.63 10.0 0.0 2.4 4 0 0 4 4 4 0 Domain of unknown function(DUF2779) HMA PF00403.21 gi|148643021|ref|YP_001273534.1| - 4.7e-17 61.8 1.0 5.4e-17 61.7 0.7 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain TusA PF01206.12 gi|148643021|ref|YP_001273534.1| - 0.019 14.5 0.1 0.038 13.6 0.0 1.6 1 1 0 1 1 1 0 Sulfurtransferase TusA RNHCP PF12647.2 gi|148643021|ref|YP_001273534.1| - 0.058 13.2 0.0 0.064 13.0 0.0 1.1 1 0 0 1 1 1 0 RNHCP domain Gp_dh_C PF02800.15 gi|148643022|ref|YP_001273535.1| - 4.3e-26 91.2 0.2 6.2e-26 90.7 0.1 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|148643022|ref|YP_001273535.1| - 4.2e-22 78.7 1.5 1.3e-21 77.1 0.2 2.2 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|148643022|ref|YP_001273535.1| - 1.7e-10 40.8 2.2 2.4e-10 40.3 0.4 2.1 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|148643022|ref|YP_001273535.1| - 7.2e-06 25.2 0.1 0.00066 18.8 0.1 2.6 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|148643022|ref|YP_001273535.1| - 3.9e-05 24.0 0.7 0.00038 20.8 0.1 2.7 3 0 0 3 3 3 1 Homoserine dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|148643022|ref|YP_001273535.1| - 0.00041 20.3 3.3 0.0018 18.2 0.3 3.0 2 1 1 3 3 3 1 TrkA-N domain Semialdhyde_dh PF01118.19 gi|148643022|ref|YP_001273535.1| - 0.0026 18.0 0.2 0.01 16.1 0.0 2.0 3 0 0 3 3 2 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|148643022|ref|YP_001273535.1| - 0.0033 17.8 0.4 0.047 14.1 0.3 2.5 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|148643022|ref|YP_001273535.1| - 0.0041 16.1 0.0 0.0072 15.3 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|148643022|ref|YP_001273535.1| - 0.037 13.8 0.6 0.72 9.6 0.1 2.8 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.17 gi|148643022|ref|YP_001273535.1| - 0.048 14.1 0.4 0.53 10.8 0.1 2.7 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold SeleniumBinding PF11524.3 gi|148643022|ref|YP_001273535.1| - 0.82 9.8 3.5 1.1 9.4 0.1 2.7 3 0 0 3 3 3 0 Selenium binding protein AdoHcyase_NAD PF00670.16 gi|148643022|ref|YP_001273535.1| - 1.7 8.4 5.4 16 5.2 0.1 3.4 3 1 0 4 4 4 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AP_endonuc_2 PF01261.19 gi|148643023|ref|YP_001273536.1| - 2.7e-16 59.4 0.0 3.4e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Metallophos PF00149.23 gi|148643024|ref|YP_001273537.1| - 3.8e-08 32.9 4.0 2.7e-07 30.1 2.8 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|148643024|ref|YP_001273537.1| - 5.2e-08 32.8 1.0 9.7e-08 32.0 0.7 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Sigma_reg_N PF13800.1 gi|148643024|ref|YP_001273537.1| - 0.77 9.8 3.6 0.73 9.8 0.9 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal 3HCDH_N PF02737.13 gi|148643025|ref|YP_001273538.1| - 6.7e-35 120.3 0.0 3.6e-34 117.9 0.0 1.9 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|148643025|ref|YP_001273538.1| - 7.7e-20 71.1 0.0 1.3e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|148643025|ref|YP_001273538.1| - 0.0001 22.1 0.2 0.0025 17.5 0.1 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|148643025|ref|YP_001273538.1| - 0.00022 21.1 0.1 0.37 10.6 0.0 2.4 2 0 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|148643025|ref|YP_001273538.1| - 0.012 16.0 0.4 3.7 8.0 0.1 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|148643025|ref|YP_001273538.1| - 0.014 14.7 0.5 2.8 7.2 0.0 2.4 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain AAA PF00004.24 gi|148643026|ref|YP_001273539.1| - 1.2e-38 132.2 0.0 2.3e-38 131.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|148643026|ref|YP_001273539.1| - 4.3e-09 35.7 0.0 1.2e-08 34.3 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|148643026|ref|YP_001273539.1| - 7.3e-08 32.5 0.9 2.3e-07 30.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|148643026|ref|YP_001273539.1| - 1.1e-06 29.4 0.1 5.2e-06 27.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|148643026|ref|YP_001273539.1| - 6e-06 26.4 0.1 0.00046 20.3 0.1 2.6 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|148643026|ref|YP_001273539.1| - 1.4e-05 23.9 0.1 4.3e-05 22.4 0.0 1.8 2 1 0 2 2 2 1 TIP49 C-terminus AAA_5 PF07728.9 gi|148643026|ref|YP_001273539.1| - 3.7e-05 23.4 0.0 0.0002 21.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.8 gi|148643026|ref|YP_001273539.1| - 0.0001 21.3 0.1 0.00019 20.4 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_16 PF13191.1 gi|148643026|ref|YP_001273539.1| - 0.00013 22.0 0.0 0.0049 16.8 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|148643026|ref|YP_001273539.1| - 0.00019 21.7 1.8 0.00038 20.7 0.0 2.3 2 1 0 3 3 3 1 AAA domain AAA_14 PF13173.1 gi|148643026|ref|YP_001273539.1| - 0.00033 20.5 0.0 0.00076 19.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|148643026|ref|YP_001273539.1| - 0.00047 20.0 0.0 0.0038 17.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain Bac_DnaA PF00308.13 gi|148643026|ref|YP_001273539.1| - 0.0017 18.0 1.0 0.0032 17.1 0.6 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_3 PF07726.6 gi|148643026|ref|YP_001273539.1| - 0.003 17.1 0.1 0.0071 15.9 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|148643026|ref|YP_001273539.1| - 0.0041 16.2 0.0 0.011 14.9 0.0 1.7 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.13 gi|148643026|ref|YP_001273539.1| - 0.0054 16.2 0.0 0.0092 15.5 0.0 1.5 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|148643026|ref|YP_001273539.1| - 0.0056 16.3 0.0 0.23 11.1 0.0 2.3 1 1 1 2 2 2 1 NACHT domain AAA_11 PF13086.1 gi|148643026|ref|YP_001273539.1| - 0.012 15.2 0.2 0.035 13.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|148643026|ref|YP_001273539.1| - 0.014 15.3 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|148643026|ref|YP_001273539.1| - 0.021 14.2 0.0 0.036 13.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|148643026|ref|YP_001273539.1| - 0.038 13.4 0.4 5.3 6.3 0.0 2.8 2 1 1 3 3 3 0 AAA-like domain RNA_helicase PF00910.17 gi|148643026|ref|YP_001273539.1| - 0.046 13.8 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Ank_2 PF12796.2 gi|148643026|ref|YP_001273539.1| - 0.068 13.5 0.0 0.41 11.0 0.0 2.2 2 0 0 2 2 2 0 Ankyrin repeats (3 copies) AAA_25 PF13481.1 gi|148643026|ref|YP_001273539.1| - 0.094 12.1 0.3 0.51 9.6 0.2 2.0 1 1 1 2 2 2 0 AAA domain PI3K_p85B PF02192.11 gi|148643026|ref|YP_001273539.1| - 0.1 12.0 1.1 0.47 9.9 0.1 2.6 3 0 0 3 3 3 0 PI3-kinase family, p85-binding domain Shikimate_DH PF01488.15 gi|148643027|ref|YP_001273540.1| - 1.3e-34 119.1 0.1 1.3e-34 119.1 0.1 2.4 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.10 gi|148643027|ref|YP_001273540.1| - 4.6e-34 117.1 0.2 1.1e-33 115.9 0.2 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.15 gi|148643027|ref|YP_001273540.1| - 2.3e-20 72.4 5.7 5e-20 71.3 3.9 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|148643027|ref|YP_001273540.1| - 4.7e-06 26.9 0.1 1.4e-05 25.4 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|148643027|ref|YP_001273540.1| - 2e-05 23.7 0.1 5.3e-05 22.4 0.1 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|148643027|ref|YP_001273540.1| - 9.5e-05 21.5 0.6 0.0033 16.5 0.1 3.0 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain OCD_Mu_crystall PF02423.10 gi|148643027|ref|YP_001273540.1| - 0.00011 21.0 0.0 0.00019 20.3 0.0 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_2 PF03446.10 gi|148643027|ref|YP_001273540.1| - 0.00062 19.6 0.1 0.0026 17.6 0.1 2.0 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase DapB_N PF01113.15 gi|148643027|ref|YP_001273540.1| - 0.00063 19.6 0.2 0.0025 17.7 0.0 2.1 2 1 1 3 3 3 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_7 PF13241.1 gi|148643027|ref|YP_001273540.1| - 0.00064 19.9 0.7 0.0023 18.1 0.0 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|148643027|ref|YP_001273540.1| - 0.0034 17.4 0.0 0.0064 16.5 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding DFP PF04127.10 gi|148643027|ref|YP_001273540.1| - 0.0086 15.7 0.3 0.023 14.3 0.0 1.9 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein ThiF PF00899.16 gi|148643027|ref|YP_001273540.1| - 0.0088 15.8 2.9 0.088 12.6 0.0 3.0 3 0 0 3 3 3 1 ThiF family ApbA PF02558.11 gi|148643027|ref|YP_001273540.1| - 0.029 13.8 0.1 0.057 12.8 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|148643027|ref|YP_001273540.1| - 0.035 13.0 0.1 0.066 12.1 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase IlvN PF07991.7 gi|148643027|ref|YP_001273540.1| - 0.047 13.0 0.1 0.047 13.0 0.1 1.9 3 0 0 3 3 3 0 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|148643027|ref|YP_001273540.1| - 0.12 12.0 0.1 0.12 12.0 0.1 2.8 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|148643028|ref|YP_001273541.1| - 3.5e-17 62.5 0.4 6.2e-17 61.7 0.1 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Rossmann-like PF10727.4 gi|148643028|ref|YP_001273541.1| - 0.0011 18.6 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 Rossmann-like domain Sirohm_synth_M PF14824.1 gi|148643028|ref|YP_001273541.1| - 0.005 15.7 0.2 0.011 14.7 0.1 1.6 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central Endonuc-BsobI PF09194.5 gi|148643028|ref|YP_001273541.1| - 0.0062 15.5 0.2 0.011 14.7 0.1 1.3 1 0 0 1 1 1 1 Restriction endonuclease BsobI 2-Hacid_dh_C PF02826.14 gi|148643028|ref|YP_001273541.1| - 0.01 14.9 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SPOB_a PF14689.1 gi|148643028|ref|YP_001273541.1| - 0.018 14.6 0.0 0.042 13.4 0.0 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain IlvN PF07991.7 gi|148643028|ref|YP_001273541.1| - 0.041 13.2 0.1 0.07 12.4 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|148643028|ref|YP_001273541.1| - 0.054 13.9 0.1 0.14 12.6 0.0 1.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent CysG_dimeriser PF10414.4 gi|148643028|ref|YP_001273541.1| - 0.077 12.4 0.0 0.21 11.0 0.0 1.7 2 0 0 2 2 2 0 Sirohaem synthase dimerisation region RNA_pol_Rpb2_2 PF04561.9 gi|148643030|ref|YP_001273543.1| - 0.016 14.6 0.0 0.023 14.0 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 2 ABC_tran PF00005.22 gi|148643031|ref|YP_001273544.1| - 2.1e-56 190.0 0.0 3.7e-27 95.2 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|148643031|ref|YP_001273544.1| - 8.7e-11 42.3 5.4 0.00073 19.5 0.0 3.9 2 2 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|148643031|ref|YP_001273544.1| - 1.5e-09 37.4 0.7 3.1e-05 23.3 0.0 3.1 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|148643031|ref|YP_001273544.1| - 4.2e-08 32.5 1.3 0.002 17.3 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|148643031|ref|YP_001273544.1| - 4.2e-06 26.0 5.5 0.00082 18.5 0.0 3.9 4 0 0 4 4 4 1 AAA ATPase domain AAA_10 PF12846.2 gi|148643031|ref|YP_001273544.1| - 1.2e-05 24.8 1.0 0.25 10.7 0.0 3.4 3 0 0 3 3 3 2 AAA-like domain AAA_22 PF13401.1 gi|148643031|ref|YP_001273544.1| - 2e-05 24.7 0.5 0.27 11.3 0.0 3.4 3 2 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|148643031|ref|YP_001273544.1| - 8.2e-05 22.0 1.3 0.1 12.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|148643031|ref|YP_001273544.1| - 0.00016 21.5 2.4 0.19 11.6 0.3 3.1 2 1 0 2 2 2 2 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|148643031|ref|YP_001273544.1| - 0.00017 21.4 0.0 1.2 9.0 0.0 3.1 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|148643031|ref|YP_001273544.1| - 0.00057 19.9 2.5 0.19 11.7 0.1 2.8 2 2 0 2 2 2 2 AAA ATPase domain DUF87 PF01935.12 gi|148643031|ref|YP_001273544.1| - 0.00068 19.5 2.3 0.59 9.9 0.0 2.6 2 0 0 2 2 2 2 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|148643031|ref|YP_001273544.1| - 0.0012 19.6 6.1 0.079 13.7 0.1 3.7 4 1 0 4 4 2 1 AAA domain AAA_33 PF13671.1 gi|148643031|ref|YP_001273544.1| - 0.0012 18.6 0.6 0.29 10.9 0.1 2.7 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|148643031|ref|YP_001273544.1| - 0.0027 17.4 1.1 0.33 10.6 0.1 2.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|148643031|ref|YP_001273544.1| - 0.0029 16.4 0.5 0.64 8.7 0.0 2.3 2 0 0 2 2 2 1 ArgK protein Miro PF08477.8 gi|148643031|ref|YP_001273544.1| - 0.0082 16.6 0.3 1.6 9.2 0.1 2.7 2 0 0 2 2 2 1 Miro-like protein NACHT PF05729.7 gi|148643031|ref|YP_001273544.1| - 0.011 15.3 0.1 5.2 6.7 0.0 2.8 3 0 0 3 3 3 0 NACHT domain AAA_18 PF13238.1 gi|148643031|ref|YP_001273544.1| - 0.011 15.9 1.0 2.2 8.5 0.2 2.9 2 1 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|148643031|ref|YP_001273544.1| - 0.015 14.8 0.0 2.2 7.7 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PRK PF00485.13 gi|148643031|ref|YP_001273544.1| - 0.016 14.7 0.2 4.5 6.7 0.0 2.5 2 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.17 gi|148643031|ref|YP_001273544.1| - 0.018 13.9 2.5 1.5 7.5 0.2 2.4 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.1 gi|148643031|ref|YP_001273544.1| - 0.024 14.2 0.1 1.8 8.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|148643031|ref|YP_001273544.1| - 0.028 13.8 0.0 0.64 9.4 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_24 PF13479.1 gi|148643031|ref|YP_001273544.1| - 0.037 13.5 0.6 6.5 6.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain KAP_NTPase PF07693.9 gi|148643031|ref|YP_001273544.1| - 0.04 12.8 0.0 0.22 10.4 0.0 2.0 2 0 0 2 2 2 0 KAP family P-loop domain AAA_23 PF13476.1 gi|148643031|ref|YP_001273544.1| - 0.047 14.0 6.1 0.38 11.0 0.2 2.6 2 1 0 3 3 3 0 AAA domain PduV-EutP PF10662.4 gi|148643031|ref|YP_001273544.1| - 0.047 13.1 0.6 2 7.9 0.0 2.8 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.1 gi|148643031|ref|YP_001273544.1| - 0.058 12.7 1.7 4.2 6.7 0.0 2.8 2 1 0 2 2 2 0 AAA domain cobW PF02492.14 gi|148643031|ref|YP_001273544.1| - 0.088 12.2 3.4 1.3 8.4 0.1 2.9 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|148643031|ref|YP_001273544.1| - 0.09 11.8 0.2 3 6.9 0.1 2.3 2 0 0 2 2 2 0 Zeta toxin RNA_helicase PF00910.17 gi|148643031|ref|YP_001273544.1| - 0.37 10.9 2.0 22 5.2 0.0 2.8 3 0 0 3 3 2 0 RNA helicase APS_kinase PF01583.15 gi|148643031|ref|YP_001273544.1| - 0.38 10.4 2.5 18 4.9 0.2 3.3 2 1 1 3 3 3 0 Adenylylsulphate kinase Dus PF01207.12 gi|148643032|ref|YP_001273545.1| - 2.2e-12 46.4 2.7 3.1e-12 45.9 1.9 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|148643032|ref|YP_001273545.1| - 0.0014 17.9 0.8 0.0021 17.3 0.4 1.6 1 1 1 2 2 2 1 Histidine biosynthesis protein RNA_polI_A34 PF08208.6 gi|148643032|ref|YP_001273545.1| - 0.01 15.5 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase I subunit RPA34.5 GGDN PF05165.7 gi|148643033|ref|YP_001273546.1| - 2e-102 341.4 0.2 2.4e-102 341.2 0.1 1.0 1 0 0 1 1 1 1 GGDN family UPF0052 PF01933.13 gi|148643034|ref|YP_001273547.1| - 2.9e-51 174.5 2.1 4.8e-51 173.8 1.4 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 F420_ligase PF01996.11 gi|148643035|ref|YP_001273548.1| - 1.1e-69 233.9 1.0 1.2e-69 233.8 0.7 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase NAD_binding_5 PF07994.7 gi|148643035|ref|YP_001273548.1| - 0.098 12.1 0.1 0.15 11.5 0.1 1.2 1 0 0 1 1 1 0 Myo-inositol-1-phosphate synthase IMP_cyclohyd PF07826.6 gi|148643036|ref|YP_001273549.1| - 1.9e-60 203.6 0.8 2.2e-60 203.4 0.5 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein ExbD PF02472.11 gi|148643037|ref|YP_001273550.1| - 6.7e-09 35.8 0.2 8.3e-09 35.5 0.2 1.1 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR Pro_racemase PF05544.6 gi|148643037|ref|YP_001273550.1| - 0.068 11.9 0.0 0.1 11.3 0.0 1.2 1 0 0 1 1 1 0 Proline racemase MotA_ExbB PF01618.11 gi|148643038|ref|YP_001273551.1| - 1.5e-32 112.1 2.0 2.7e-32 111.2 1.4 1.5 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family RNase_HII PF01351.13 gi|148643039|ref|YP_001273552.1| - 4.3e-53 179.8 0.2 4.9e-53 179.7 0.2 1.0 1 0 0 1 1 1 1 Ribonuclease HII PTS_IIB PF02302.12 gi|148643039|ref|YP_001273552.1| - 0.38 11.2 2.8 2.3 8.7 0.1 2.3 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit MreB_Mbl PF06723.8 gi|148643040|ref|YP_001273553.1| - 4.9e-98 327.7 15.9 5.9e-98 327.4 11.0 1.0 1 0 0 1 1 1 1 MreB/Mbl protein HSP70 PF00012.15 gi|148643040|ref|YP_001273553.1| - 2.1e-14 52.3 5.1 8e-13 47.1 2.3 2.2 1 1 1 2 2 2 2 Hsp70 protein Actin PF00022.14 gi|148643040|ref|YP_001273553.1| - 7e-09 34.5 0.0 0.00012 20.6 0.0 2.1 1 1 0 2 2 2 2 Actin FtsA PF14450.1 gi|148643040|ref|YP_001273553.1| - 4.9e-07 29.6 1.3 4.9e-07 29.6 0.9 2.6 2 1 0 2 2 2 1 Cell division protein FtsA DDR PF08841.5 gi|148643040|ref|YP_001273553.1| - 0.013 14.3 6.8 0.03 13.1 4.7 1.9 1 1 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain CDP-OH_P_transf PF01066.16 gi|148643042|ref|YP_001273555.1| - 1.6e-10 41.1 20.1 1.1e-08 35.3 13.9 2.9 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase DUF3043 PF11241.3 gi|148643042|ref|YP_001273555.1| - 0.11 12.0 0.1 0.11 12.0 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3043) DUF515 PF04415.7 gi|148643043|ref|YP_001273556.1| - 1.3e-41 142.2 12.3 2.7e-27 95.0 2.2 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF515) DUF3139 PF11337.3 gi|148643043|ref|YP_001273556.1| - 0.054 13.7 0.4 0.15 12.3 0.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) Sortase PF04203.8 gi|148643044|ref|YP_001273557.1| - 1.1e-17 63.7 0.0 1.6e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 Sortase family ATP_synt_H PF05493.8 gi|148643044|ref|YP_001273557.1| - 0.75 9.9 6.1 0.11 12.5 1.0 1.9 2 0 0 2 2 2 0 ATP synthase subunit H DUF381 PF04038.7 gi|148643045|ref|YP_001273558.1| - 2.9e-20 72.0 1.3 4e-20 71.6 0.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|148643045|ref|YP_001273558.1| - 1.6e-19 69.0 0.0 2.7e-19 68.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF372) Spore_III_AF PF09581.5 gi|148643045|ref|YP_001273558.1| - 0.069 13.0 0.1 0.084 12.7 0.1 1.2 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) CBAH PF02275.13 gi|148643046|ref|YP_001273559.1| - 1.6e-95 320.2 0.1 1.7e-95 320.0 0.1 1.0 1 0 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family AAT PF03417.11 gi|148643046|ref|YP_001273559.1| - 0.0057 16.1 0.0 0.019 14.4 0.0 1.8 2 0 0 2 2 2 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase Pyridoxal_deC PF00282.14 gi|148643047|ref|YP_001273560.1| - 3.9e-34 117.7 0.0 5.6e-34 117.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|148643047|ref|YP_001273560.1| - 2.1e-17 62.9 0.0 1.2e-12 47.2 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|148643047|ref|YP_001273560.1| - 2.5e-10 39.8 0.0 1.1e-06 27.8 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|148643047|ref|YP_001273560.1| - 2.3e-07 30.1 0.0 3.5e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family GDC-P PF02347.11 gi|148643047|ref|YP_001273560.1| - 1e-06 27.7 1.0 0.0014 17.3 0.0 2.4 3 0 0 3 3 3 2 Glycine cleavage system P-protein Beta_elim_lyase PF01212.16 gi|148643047|ref|YP_001273560.1| - 5.2e-06 25.8 0.1 1.4e-05 24.4 0.1 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase PPDK_N PF01326.14 gi|148643048|ref|YP_001273561.1| - 1.1e-109 366.5 0.0 1.5e-109 366.0 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|148643048|ref|YP_001273561.1| - 1e-81 274.0 0.1 1.5e-81 273.5 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|148643048|ref|YP_001273561.1| - 4.6e-26 90.1 1.4 2e-25 88.1 1.0 2.2 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Ribosomal_L16 PF00252.13 gi|148643049|ref|YP_001273562.1| - 8.1e-30 103.2 0.4 9e-30 103.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Biotin_lipoyl_2 PF13533.1 gi|148643049|ref|YP_001273562.1| - 0.12 12.0 0.1 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Biotin-lipoyl like ABC_tran PF00005.22 gi|148643050|ref|YP_001273563.1| - 8.1e-37 126.5 0.0 1.4e-36 125.7 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|148643050|ref|YP_001273563.1| - 4.8e-09 36.6 1.0 7.4e-05 22.8 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|148643050|ref|YP_001273563.1| - 2.3e-05 23.6 2.1 0.035 13.1 0.3 2.6 2 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|148643050|ref|YP_001273563.1| - 7.8e-05 21.9 0.2 0.0025 17.0 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|148643050|ref|YP_001273563.1| - 0.0014 18.8 0.7 0.018 15.2 0.5 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|148643050|ref|YP_001273563.1| - 0.0022 17.7 0.1 0.014 15.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|148643050|ref|YP_001273563.1| - 0.0026 17.4 0.0 0.0095 15.6 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_29 PF13555.1 gi|148643050|ref|YP_001273563.1| - 0.0046 16.4 0.1 0.0085 15.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|148643050|ref|YP_001273563.1| - 0.011 16.1 0.7 0.021 15.1 0.5 1.6 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|148643050|ref|YP_001273563.1| - 0.012 15.0 0.0 0.96 8.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|148643050|ref|YP_001273563.1| - 0.017 13.6 3.0 0.28 9.7 0.1 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Zeta_toxin PF06414.7 gi|148643050|ref|YP_001273563.1| - 0.019 14.0 0.1 0.052 12.6 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_30 PF13604.1 gi|148643050|ref|YP_001273563.1| - 0.031 13.8 0.0 0.091 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|148643050|ref|YP_001273563.1| - 0.031 13.7 0.0 0.034 13.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SbcCD_C PF13558.1 gi|148643050|ref|YP_001273563.1| - 0.037 13.9 0.3 0.26 11.2 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.1 gi|148643050|ref|YP_001273563.1| - 0.045 13.7 0.6 0.21 11.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|148643050|ref|YP_001273563.1| - 0.053 12.7 0.2 0.1 11.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|148643050|ref|YP_001273563.1| - 0.056 13.4 0.1 0.085 12.8 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain PduV-EutP PF10662.4 gi|148643050|ref|YP_001273563.1| - 0.067 12.6 0.1 0.16 11.4 0.1 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_22 PF13401.1 gi|148643050|ref|YP_001273563.1| - 0.069 13.2 0.7 1.3 9.2 0.1 2.2 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|148643050|ref|YP_001273563.1| - 0.085 11.5 0.0 0.12 11.0 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit NB-ARC PF00931.17 gi|148643050|ref|YP_001273563.1| - 0.09 11.6 0.1 0.18 10.6 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.16 gi|148643050|ref|YP_001273563.1| - 0.12 11.5 0.0 0.44 9.6 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|148643050|ref|YP_001273563.1| - 0.19 12.5 0.9 0.51 11.1 0.7 1.9 1 1 0 1 1 1 0 AAA domain OpuAC PF04069.7 gi|148643051|ref|YP_001273564.1| - 2.9e-62 210.3 1.2 3.7e-62 210.0 0.8 1.1 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.17 gi|148643051|ref|YP_001273564.1| - 1e-19 70.8 16.6 1.6e-19 70.1 11.5 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF1109 PF06532.6 gi|148643051|ref|YP_001273564.1| - 0.017 14.5 2.6 0.03 13.7 1.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1109) DUF4131 PF13567.1 gi|148643051|ref|YP_001273564.1| - 0.61 9.4 4.0 0.25 10.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) UPF0154 PF03672.8 gi|148643051|ref|YP_001273564.1| - 3 7.5 7.1 2.9 7.5 0.2 2.9 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0154) Pcc1 PF09341.5 gi|148643052|ref|YP_001273565.1| - 0.0063 16.5 0.0 0.0088 16.0 0.0 1.3 1 1 0 1 1 1 1 Transcription factor Pcc1 DUF912 PF06024.7 gi|148643053|ref|YP_001273566.1| - 0.0051 16.8 0.1 0.0051 16.8 0.1 3.0 4 0 0 4 4 4 1 Nucleopolyhedrovirus protein of unknown function (DUF912) zf-RING_2 PF13639.1 gi|148643053|ref|YP_001273566.1| - 0.043 13.6 1.3 0.078 12.8 0.9 1.4 1 0 0 1 1 1 0 Ring finger domain zf-B_box PF00643.19 gi|148643053|ref|YP_001273566.1| - 0.2 11.5 8.3 0.1 12.5 2.7 2.1 2 0 0 2 2 2 0 B-box zinc finger FYVE PF01363.16 gi|148643053|ref|YP_001273566.1| - 0.27 11.1 6.6 2.7 7.9 4.6 2.2 1 1 0 1 1 1 0 FYVE zinc finger DUF4428 PF14471.1 gi|148643053|ref|YP_001273566.1| - 0.32 10.7 7.6 0.65 9.7 5.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) DUF3753 PF12575.3 gi|148643053|ref|YP_001273566.1| - 0.36 10.6 5.7 0.83 9.4 3.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3753) zf-C3HC4_2 PF13923.1 gi|148643053|ref|YP_001273566.1| - 0.55 10.3 7.9 8.8 6.4 1.8 2.3 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) LIM PF00412.17 gi|148643053|ref|YP_001273566.1| - 1 9.5 7.0 2.4 8.3 4.9 1.7 1 0 0 1 1 1 0 LIM domain HIGH_NTase1 PF05636.6 gi|148643054|ref|YP_001273567.1| - 3.6e-19 69.0 1.3 9.9e-14 51.1 0.0 2.1 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase ATP-sulfurylase PF01747.12 gi|148643054|ref|YP_001273567.1| - 0.0059 15.9 0.0 0.013 14.8 0.0 1.5 1 0 0 1 1 1 1 ATP-sulfurylase CTP_transf_2 PF01467.21 gi|148643054|ref|YP_001273567.1| - 0.013 15.5 0.1 0.046 13.7 0.0 2.0 2 0 0 2 2 2 0 Cytidylyltransferase PsbU PF06514.6 gi|148643054|ref|YP_001273567.1| - 0.027 14.2 0.7 0.39 10.5 0.1 2.9 1 1 0 2 2 2 0 Photosystem II 12 kDa extrinsic protein (PsbU) DUF4399 PF14347.1 gi|148643055|ref|YP_001273568.1| - 1.3e-25 89.2 1.8 6.8e-06 26.0 0.0 5.3 5 1 1 6 6 6 4 Domain of unknown function (DUF4399) Big_1 PF02369.11 gi|148643055|ref|YP_001273568.1| - 4.5e-11 42.5 37.0 0.00022 21.0 0.2 7.1 6 1 1 7 7 7 5 Bacterial Ig-like domain (group 1) Beta_helix PF13229.1 gi|148643055|ref|YP_001273568.1| - 3.1e-06 27.0 92.9 1.7e-05 24.6 30.2 6.8 1 1 5 6 6 6 3 Right handed beta helix region Beta_helix PF13229.1 gi|148643056|ref|YP_001273569.1| - 1.3e-06 28.2 142.8 3.9e-06 26.7 23.9 6.1 2 1 4 6 6 6 5 Right handed beta helix region EVI2A PF05399.6 gi|148643056|ref|YP_001273569.1| - 0.0041 16.4 0.4 0.0098 15.1 0.3 1.6 1 0 0 1 1 1 1 Ectropic viral integration site 2A protein (EVI2A) Adeno_E1B_55K PF01696.12 gi|148643056|ref|YP_001273569.1| - 0.078 11.4 6.6 0.032 12.6 1.9 2.2 2 1 0 2 2 2 0 Adenovirus EB1 55K protein / large t-antigen Amidohydro_1 PF01979.15 gi|148643057|ref|YP_001273570.1| - 1.1e-24 87.6 0.2 3.7e-24 85.9 0.1 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|148643057|ref|YP_001273570.1| - 2.8e-19 70.2 0.0 4.9e-19 69.4 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|148643057|ref|YP_001273570.1| - 5.9e-15 54.8 0.0 1.9e-14 53.2 0.0 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|148643057|ref|YP_001273570.1| - 1.3e-06 27.9 0.0 0.0069 15.6 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family DHOase PF12890.2 gi|148643057|ref|YP_001273570.1| - 0.038 13.6 0.0 0.39 10.3 0.0 2.3 1 1 0 1 1 1 0 Dihydro-orotase-like Fer4 PF00037.22 gi|148643058|ref|YP_001273571.1| - 2e-59 194.9 115.3 1.6e-06 27.4 1.7 12.6 13 0 0 13 13 13 12 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148643058|ref|YP_001273571.1| - 1.5e-49 166.1 98.2 7.5e-10 39.0 6.6 8.1 4 2 5 9 9 9 9 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148643058|ref|YP_001273571.1| - 3.6e-45 152.0 189.3 1.1e-08 35.1 7.9 8.2 2 2 9 11 11 11 11 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148643058|ref|YP_001273571.1| - 2.4e-38 129.6 106.7 1.3e-07 31.2 8.8 8.3 2 2 9 11 11 11 11 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148643058|ref|YP_001273571.1| - 3.8e-37 126.8 94.4 2.4e-05 25.0 7.2 11.6 9 3 3 12 12 12 12 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|148643058|ref|YP_001273571.1| - 8.4e-36 120.3 119.4 4.6e-06 26.2 1.7 12.3 12 0 0 12 12 12 12 4Fe-4S binding domain Fer4_8 PF13183.1 gi|148643058|ref|YP_001273571.1| - 4.9e-32 109.7 90.5 5.3e-07 29.5 5.7 9.1 5 3 3 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148643058|ref|YP_001273571.1| - 1.3e-30 105.0 97.3 1.5e-08 34.3 6.5 8.3 6 2 2 8 8 8 7 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148643058|ref|YP_001273571.1| - 3.6e-30 102.0 111.8 1.1e-05 25.0 1.4 12.5 12 0 0 12 12 12 10 4Fe-4S binding domain Fer4_3 PF12798.2 gi|148643058|ref|YP_001273571.1| - 8e-23 79.1 146.8 0.013 15.9 2.2 12.4 12 0 0 12 12 12 12 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148643058|ref|YP_001273571.1| - 1.1e-22 78.2 122.1 0.0064 16.7 1.5 12.3 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_17 PF13534.1 gi|148643058|ref|YP_001273571.1| - 1.3e-20 73.5 101.7 1.7e-05 25.0 5.5 10.5 5 4 3 8 8 8 8 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148643058|ref|YP_001273571.1| - 1e-12 48.2 118.2 0.0008 19.7 1.1 12.0 8 4 4 12 12 12 10 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|148643058|ref|YP_001273571.1| - 1.1e-10 41.2 62.9 3.2e-05 23.7 5.8 6.4 2 2 4 6 6 6 6 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|148643058|ref|YP_001273571.1| - 3.5e-06 27.4 106.2 0.13 12.8 1.5 11.8 7 4 3 10 10 10 5 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|148643058|ref|YP_001273571.1| - 2.6e-05 24.5 108.5 0.011 16.0 4.4 11.6 10 1 1 11 11 11 4 4Fe-4S single cluster domain MDH PF02315.11 gi|148643058|ref|YP_001273571.1| - 0.56 10.1 6.7 27 4.7 0.1 3.8 4 0 0 4 4 4 0 Methanol dehydrogenase beta subunit NiFeSe_Hases PF00374.14 gi|148643059|ref|YP_001273572.1| - 4.9e-28 98.1 0.0 1.2e-15 57.3 0.0 3.0 2 1 1 3 3 3 3 Nickel-dependent hydrogenase Oxidored_q6 PF01058.17 gi|148643060|ref|YP_001273573.1| - 2.4e-30 104.8 0.0 4.1e-30 104.0 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit FlpD PF02662.11 gi|148643061|ref|YP_001273574.1| - 4.2e-56 187.9 0.2 4.8e-56 187.7 0.2 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit UPF0051 PF01458.12 gi|148643062|ref|YP_001273575.1| - 8.4e-58 195.5 0.3 1.1e-57 195.1 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Aldolase PF01081.14 gi|148643062|ref|YP_001273575.1| - 0.059 12.5 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 KDPG and KHG aldolase ABC_tran PF00005.22 gi|148643063|ref|YP_001273576.1| - 3.2e-22 79.3 0.0 5.5e-22 78.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|148643063|ref|YP_001273576.1| - 2e-07 31.3 4.2 1.4e-05 25.2 2.9 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|148643063|ref|YP_001273576.1| - 0.00016 21.1 0.0 0.00044 19.7 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|148643063|ref|YP_001273576.1| - 0.0011 18.2 0.0 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|148643063|ref|YP_001273576.1| - 0.0019 17.4 0.3 0.13 11.5 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|148643063|ref|YP_001273576.1| - 0.012 15.9 1.0 0.021 15.1 0.7 1.6 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|148643063|ref|YP_001273576.1| - 0.043 13.2 0.0 0.078 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|148643063|ref|YP_001273576.1| - 0.13 11.2 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|148643063|ref|YP_001273576.1| - 0.14 11.9 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain PRC PF05239.11 gi|148643064|ref|YP_001273577.1| - 6.2e-09 35.6 1.6 7.8e-09 35.2 1.1 1.2 1 0 0 1 1 1 1 PRC-barrel domain NTP_transf_3 PF12804.2 gi|148643065|ref|YP_001273578.1| - 4.4e-15 56.1 0.0 5.9e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|148643065|ref|YP_001273578.1| - 5e-10 39.2 0.0 6.3e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|148643065|ref|YP_001273578.1| - 3.2e-09 36.7 0.0 4e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|148643065|ref|YP_001273578.1| - 3.3e-07 29.8 0.0 4.1e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase DUF2114 PF09887.4 gi|148643066|ref|YP_001273579.1| - 5.9e-217 720.3 2.4 7e-217 720.0 1.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) MtrH PF02007.13 gi|148643067|ref|YP_001273580.1| - 9.2e-137 454.9 4.0 1e-136 454.7 2.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrG PF04210.8 gi|148643068|ref|YP_001273581.1| - 1.6e-26 91.7 0.5 2e-26 91.4 0.3 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF2187 PF09953.4 gi|148643068|ref|YP_001273581.1| - 0.075 12.7 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2187) MtrF PF09472.5 gi|148643069|ref|YP_001273582.1| - 1.1e-20 72.6 0.2 1.2e-20 72.4 0.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF1514 PF07438.6 gi|148643069|ref|YP_001273582.1| - 0.27 11.1 2.1 0.51 10.2 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1514) MtrA PF04208.9 gi|148643070|ref|YP_001273583.1| - 4.3e-82 273.7 2.2 5.6e-82 273.4 1.6 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrG PF04210.8 gi|148643070|ref|YP_001273583.1| - 0.048 13.3 0.1 0.094 12.4 0.1 1.5 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G MtrB PF05440.7 gi|148643071|ref|YP_001273584.1| - 1.7e-27 95.3 0.2 1.9e-27 95.1 0.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrC PF04211.8 gi|148643072|ref|YP_001273585.1| - 2.1e-92 308.8 28.4 2.5e-92 308.6 19.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrD PF04207.7 gi|148643073|ref|YP_001273586.1| - 4.6e-90 300.8 30.3 5.3e-90 300.6 21.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D DUF4173 PF13777.1 gi|148643073|ref|YP_001273586.1| - 0.045 13.0 0.4 1.3 8.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4173) DUF1628 PF07790.6 gi|148643073|ref|YP_001273586.1| - 0.058 14.1 0.3 0.058 14.1 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1628) MtrE PF04206.7 gi|148643074|ref|YP_001273587.1| - 3.1e-125 416.6 19.5 3.6e-125 416.4 13.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E Peptidase_M50 PF02163.17 gi|148643074|ref|YP_001273587.1| - 0.78 8.6 3.9 5.2 5.9 2.7 2.2 1 1 0 1 1 1 0 Peptidase family M50 MCR_alpha_N PF02745.10 gi|148643075|ref|YP_001273588.1| - 3.9e-144 478.7 0.2 5e-144 478.3 0.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|148643075|ref|YP_001273588.1| - 3e-66 221.1 5.1 4.7e-66 220.5 2.8 1.9 2 0 0 2 2 2 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain TraT PF05818.7 gi|148643075|ref|YP_001273588.1| - 2.8 7.2 4.6 0.73 9.2 0.2 2.1 3 0 0 3 3 3 0 Enterobacterial TraT complement resistance protein MCR_gamma PF02240.11 gi|148643076|ref|YP_001273589.1| - 1.8e-133 443.2 1.1 2.1e-133 443.0 0.8 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit NuA4 PF09340.5 gi|148643076|ref|YP_001273589.1| - 0.065 12.8 0.1 3.2 7.4 0.0 3.1 3 0 0 3 3 3 0 Histone acetyltransferase subunit NuA4 MCR_C PF04609.7 gi|148643077|ref|YP_001273590.1| - 2.5e-38 131.3 5.7 4e-33 114.3 1.0 3.0 1 1 1 2 2 2 2 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.9 gi|148643078|ref|YP_001273591.1| - 2.4e-42 144.0 1.2 2.9e-42 143.8 0.8 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.13 gi|148643079|ref|YP_001273592.1| - 6.6e-130 431.8 5.0 9.7e-130 431.3 3.5 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|148643079|ref|YP_001273592.1| - 7.2e-83 276.5 3.9 1.1e-82 275.9 2.7 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF512 PF04459.7 gi|148643080|ref|YP_001273593.1| - 1.7e-26 92.5 0.1 3.3e-26 91.6 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|148643080|ref|YP_001273593.1| - 9.3e-13 48.6 1.2 9e-12 45.4 0.3 2.4 2 1 0 2 2 2 1 Radical SAM superfamily MCR_C PF04609.7 gi|148643081|ref|YP_001273594.1| - 1.4e-107 358.4 0.4 1.7e-107 358.2 0.3 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C 2-ph_phosp PF04029.9 gi|148643083|ref|YP_001273596.1| - 2.6e-57 193.4 1.9 2.9e-57 193.3 1.3 1.0 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase TraB PF01963.12 gi|148643084|ref|YP_001273597.1| - 3.7e-46 157.6 0.0 5.1e-46 157.2 0.0 1.2 1 0 0 1 1 1 1 TraB family DUF1922 PF09082.5 gi|148643085|ref|YP_001273598.1| - 5.1e-42 141.7 5.0 5.7e-42 141.6 3.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) GerE PF00196.14 gi|148643085|ref|YP_001273598.1| - 0.025 13.9 0.1 0.03 13.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family zf-PARP PF00645.13 gi|148643085|ref|YP_001273598.1| - 0.1 12.8 0.3 0.12 12.5 0.2 1.2 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region DUF21 PF01595.15 gi|148643086|ref|YP_001273599.1| - 1.7e-53 180.6 4.4 2.3e-53 180.1 3.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|148643086|ref|YP_001273599.1| - 3.3e-19 68.4 0.1 3.3e-19 68.4 0.1 2.2 3 0 0 3 3 3 1 Transporter associated domain CBS PF00571.23 gi|148643086|ref|YP_001273599.1| - 1.5e-06 27.9 0.1 0.00025 20.7 0.0 2.8 2 0 0 2 2 2 2 CBS domain Colicin_V PF02674.11 gi|148643086|ref|YP_001273599.1| - 0.071 12.9 0.4 0.071 12.9 0.3 2.1 2 0 0 2 2 2 0 Colicin V production protein Na_Ca_ex PF01699.19 gi|148643087|ref|YP_001273600.1| - 2.6e-58 195.5 38.8 1.2e-30 105.9 9.2 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DsbD_2 PF13386.1 gi|148643087|ref|YP_001273600.1| - 0.42 10.3 13.6 0.023 14.4 3.7 3.1 1 1 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region ATP_bind_3 PF01171.15 gi|148643088|ref|YP_001273601.1| - 6.1e-14 51.9 0.0 1e-13 51.2 0.0 1.3 1 1 0 1 1 1 1 PP-loop family ATP_bind_4 PF01902.12 gi|148643088|ref|YP_001273601.1| - 0.0029 16.9 0.0 0.0051 16.2 0.0 1.3 1 0 0 1 1 1 1 ATP-binding region tRNA_Me_trans PF03054.11 gi|148643088|ref|YP_001273601.1| - 0.022 13.3 0.1 0.065 11.7 0.1 1.7 1 1 0 1 1 1 0 tRNA methyl transferase RecR PF02132.10 gi|148643088|ref|YP_001273601.1| - 0.032 13.6 2.0 0.057 12.8 1.4 1.5 1 0 0 1 1 1 0 RecR protein DUF77 PF01910.12 gi|148643089|ref|YP_001273602.1| - 1.6e-30 104.6 0.2 1.7e-30 104.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 DUF556 PF04476.8 gi|148643089|ref|YP_001273602.1| - 0.066 12.4 0.0 0.073 12.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF556) DUF442 PF04273.8 gi|148643089|ref|YP_001273602.1| - 0.13 12.1 0.1 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative phosphatase (DUF442) DegT_DnrJ_EryC1 PF01041.12 gi|148643090|ref|YP_001273603.1| - 1.9e-138 461.4 0.0 2.1e-138 461.2 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|148643090|ref|YP_001273603.1| - 1.4e-10 40.7 0.1 3e-10 39.7 0.1 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|148643090|ref|YP_001273603.1| - 3.6e-09 35.8 0.1 1.5e-07 30.4 0.1 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|148643090|ref|YP_001273603.1| - 6.8e-09 34.4 0.1 1e-08 33.9 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme TRM PF02005.11 gi|148643091|ref|YP_001273604.1| - 3e-126 421.3 0.0 3.8e-126 421.0 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|148643091|ref|YP_001273604.1| - 0.00031 20.3 0.0 0.00077 19.0 0.0 1.5 1 1 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|148643091|ref|YP_001273604.1| - 0.00051 19.4 0.0 0.0017 17.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|148643091|ref|YP_001273604.1| - 0.00078 19.0 0.0 0.0024 17.4 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|148643091|ref|YP_001273604.1| - 0.0042 16.2 0.0 0.0079 15.3 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_16 PF10294.4 gi|148643091|ref|YP_001273604.1| - 0.0048 16.3 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase PrmA PF06325.8 gi|148643091|ref|YP_001273604.1| - 0.053 12.6 0.0 0.096 11.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) AsnC_trans_reg PF01037.16 gi|148643092|ref|YP_001273605.1| - 7e-14 51.2 0.0 1.1e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|148643092|ref|YP_001273605.1| - 1.6e-13 49.8 0.2 3e-13 48.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|148643092|ref|YP_001273605.1| - 9.4e-12 44.2 0.1 1.5e-11 43.6 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|148643092|ref|YP_001273605.1| - 0.0011 19.1 0.0 0.0019 18.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|148643092|ref|YP_001273605.1| - 0.0015 18.2 0.0 0.0033 17.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|148643092|ref|YP_001273605.1| - 0.0015 18.1 0.1 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|148643092|ref|YP_001273605.1| - 0.0017 17.7 0.0 0.0028 17.0 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 EAP30 PF04157.11 gi|148643092|ref|YP_001273605.1| - 0.0071 15.5 0.0 0.015 14.4 0.0 1.5 2 0 0 2 2 2 1 EAP30/Vps36 family MarR_2 PF12802.2 gi|148643092|ref|YP_001273605.1| - 0.0074 15.9 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|148643092|ref|YP_001273605.1| - 0.018 14.8 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|148643092|ref|YP_001273605.1| - 0.021 14.4 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Act-Frag_cataly PF09192.5 gi|148643092|ref|YP_001273605.1| - 0.027 13.4 0.0 0.035 13.0 0.0 1.4 1 1 0 1 1 1 0 Actin-fragmin kinase, catalytic HTH_IclR PF09339.5 gi|148643092|ref|YP_001273605.1| - 0.033 13.7 0.0 0.06 12.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|148643092|ref|YP_001273605.1| - 0.042 13.5 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FeoC PF09012.5 gi|148643092|ref|YP_001273605.1| - 0.049 13.3 0.0 0.085 12.5 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_DeoR PF08220.7 gi|148643092|ref|YP_001273605.1| - 0.053 13.0 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_41 PF14502.1 gi|148643092|ref|YP_001273605.1| - 0.056 13.0 0.0 0.25 11.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2089 PF09862.4 gi|148643092|ref|YP_001273605.1| - 0.087 12.6 0.1 0.23 11.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) RPA_C PF08784.6 gi|148643092|ref|YP_001273605.1| - 0.14 12.5 0.2 1.2 9.6 0.1 2.1 2 0 0 2 2 2 0 Replication protein A C terminal GCHY-1 PF02649.9 gi|148643093|ref|YP_001273606.1| - 3.1e-85 285.7 3.1 3.5e-85 285.5 2.1 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 YecR PF13992.1 gi|148643093|ref|YP_001273606.1| - 0.085 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 YecR-like lipoprotein DUF2120 PF09893.4 gi|148643094|ref|YP_001273607.1| - 1.9e-27 95.9 0.1 2.3e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2120) VP9 PF09625.5 gi|148643094|ref|YP_001273607.1| - 0.11 12.2 0.1 0.25 11.1 0.0 1.7 2 0 0 2 2 2 0 VP9 protein Radical_SAM PF04055.16 gi|148643095|ref|YP_001273608.1| - 1.3e-14 54.6 0.2 3.3e-14 53.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Met_10 PF02475.11 gi|148643096|ref|YP_001273609.1| - 4.6e-68 228.7 1.9 6.6e-68 228.2 1.3 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|148643096|ref|YP_001273609.1| - 6.6e-06 26.6 0.0 1e-05 26.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|148643096|ref|YP_001273609.1| - 6.8e-06 25.5 0.0 1.6e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|148643096|ref|YP_001273609.1| - 1e-05 25.1 0.3 2.2e-05 24.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|148643096|ref|YP_001273609.1| - 7.6e-05 21.8 0.1 0.00043 19.3 0.1 2.0 1 1 0 1 1 1 1 Putative methyltransferase PrmA PF06325.8 gi|148643096|ref|YP_001273609.1| - 0.00013 21.2 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|148643096|ref|YP_001273609.1| - 0.00024 20.7 0.0 0.00039 20.0 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_26 PF13659.1 gi|148643096|ref|YP_001273609.1| - 0.00048 20.1 0.0 0.00077 19.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|148643096|ref|YP_001273609.1| - 0.00049 19.2 0.2 0.00095 18.3 0.0 1.6 2 0 0 2 2 2 1 rRNA small subunit methyltransferase G tRNA_U5-meth_tr PF05958.6 gi|148643096|ref|YP_001273609.1| - 0.004 15.9 0.3 0.015 14.0 0.0 1.8 1 1 1 2 2 2 1 tRNA (Uracil-5-)-methyltransferase Cons_hypoth95 PF03602.10 gi|148643096|ref|YP_001273609.1| - 0.0044 16.4 0.0 0.0082 15.5 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_21 PF05050.7 gi|148643096|ref|YP_001273609.1| - 0.0044 16.9 0.0 0.0071 16.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain DNA_methylase PF00145.12 gi|148643096|ref|YP_001273609.1| - 0.018 14.1 0.0 0.03 13.4 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase RrnaAD PF00398.15 gi|148643096|ref|YP_001273609.1| - 0.023 13.7 0.0 0.033 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase ACP53EA PF06313.6 gi|148643096|ref|YP_001273609.1| - 0.033 14.1 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 Drosophila ACP53EA protein TRM PF02005.11 gi|148643096|ref|YP_001273609.1| - 0.042 12.7 0.0 0.051 12.5 0.0 1.3 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Proteasome PF00227.21 gi|148643097|ref|YP_001273610.1| - 1.2e-55 187.8 1.7 1.3e-55 187.6 1.2 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.3 gi|148643098|ref|YP_001273611.1| - 7.2e-33 113.2 0.0 2.6e-32 111.4 0.0 2.0 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|148643098|ref|YP_001273611.1| - 5.3e-26 91.4 0.4 9.5e-26 90.6 0.3 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|148643098|ref|YP_001273611.1| - 1.2e-11 44.2 0.0 7.7e-11 41.6 0.0 2.3 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|148643098|ref|YP_001273611.1| - 1.3e-09 37.9 0.2 3.2e-09 36.6 0.2 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|148643098|ref|YP_001273611.1| - 3.6e-08 32.8 4.0 0.00091 18.7 0.2 2.9 1 1 1 2 2 2 2 KH domain Lactamase_B_3 PF13483.1 gi|148643098|ref|YP_001273611.1| - 5.6e-05 22.9 0.0 0.0002 21.1 0.0 2.0 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Scm3 PF10384.4 gi|148643098|ref|YP_001273611.1| - 0.031 13.7 0.0 0.074 12.5 0.0 1.6 1 0 0 1 1 1 0 Centromere protein Scm3 KH_1 PF00013.24 gi|148643098|ref|YP_001273611.1| - 0.069 12.8 2.8 0.14 11.7 0.2 2.6 3 0 0 3 3 3 0 KH domain AIRS_C PF02769.17 gi|148643099|ref|YP_001273612.1| - 3e-24 85.7 0.0 9.7e-24 84.1 0.0 1.8 2 1 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|148643099|ref|YP_001273612.1| - 5.4e-19 68.2 0.8 4.3e-18 65.3 0.2 2.2 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Ldh_2 PF02615.9 gi|148643100|ref|YP_001273613.1| - 1.3e-117 392.3 1.1 1.4e-117 392.1 0.8 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase DNA_pol_B PF00136.16 gi|148643101|ref|YP_001273614.1| - 6.4e-49 166.9 0.2 1.4e-48 165.8 0.0 1.6 2 0 0 2 2 2 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|148643101|ref|YP_001273614.1| - 2.5e-42 144.9 6.3 4.4e-42 144.1 4.4 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|148643101|ref|YP_001273614.1| - 8.4e-15 54.8 0.2 1.5e-14 54.0 0.2 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|148643101|ref|YP_001273614.1| - 2.4e-11 43.7 1.4 5.7e-11 42.4 0.4 2.1 2 1 0 2 2 2 1 RNase_H superfamily Pox_F12L PF03337.8 gi|148643101|ref|YP_001273614.1| - 0.053 11.4 0.0 0.19 9.5 0.0 1.7 2 0 0 2 2 2 0 Poxvirus F12L protein UPF0118 PF01594.11 gi|148643102|ref|YP_001273615.1| - 2.5e-51 174.6 37.2 2.9e-51 174.3 25.8 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 DHODB_Fe-S_bind PF10418.4 gi|148643103|ref|YP_001273616.1| - 1.9e-12 46.4 5.8 2.2e-12 46.2 2.9 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|148643103|ref|YP_001273616.1| - 1.8e-11 44.5 0.0 3e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|148643103|ref|YP_001273616.1| - 4.4e-07 29.9 0.0 7.1e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|148643103|ref|YP_001273616.1| - 0.012 15.4 0.0 0.5 10.2 0.0 2.3 2 0 0 2 2 2 0 Ferric reductase NAD binding domain DHO_dh PF01180.16 gi|148643104|ref|YP_001273617.1| - 3.3e-69 233.0 3.3 3.8e-69 232.9 2.3 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|148643104|ref|YP_001273617.1| - 6.4e-11 41.6 0.2 8.4e-10 37.9 0.1 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|148643104|ref|YP_001273617.1| - 6.6e-08 32.0 0.6 1.7e-07 30.6 0.4 1.8 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|148643104|ref|YP_001273617.1| - 0.00012 21.4 0.1 0.00057 19.2 0.0 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|148643104|ref|YP_001273617.1| - 0.0013 17.6 0.8 0.002 17.0 0.1 1.6 2 1 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|148643104|ref|YP_001273617.1| - 0.0019 17.1 0.6 0.0061 15.4 0.1 2.1 2 1 0 2 2 2 1 FMN-dependent dehydrogenase DUF561 PF04481.7 gi|148643104|ref|YP_001273617.1| - 0.012 14.6 0.5 0.048 12.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF561) IGPS PF00218.16 gi|148643104|ref|YP_001273617.1| - 0.11 11.5 0.1 0.37 9.8 0.0 1.8 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Med9 PF07544.8 gi|148643105|ref|YP_001273618.1| - 0.00018 21.1 22.4 0.014 15.1 3.3 3.8 2 2 2 4 4 4 2 RNA polymerase II transcription mediator complex subunit 9 B3_4 PF03483.12 gi|148643105|ref|YP_001273618.1| - 0.0016 17.9 1.0 0.0016 17.9 0.7 2.0 1 1 1 2 2 2 1 B3/4 domain Sec2p PF06428.6 gi|148643105|ref|YP_001273618.1| - 0.016 15.0 4.7 0.016 15.0 3.3 3.5 1 1 1 3 3 3 0 GDP/GTP exchange factor Sec2p HrpB7 PF09486.5 gi|148643105|ref|YP_001273618.1| - 0.018 14.9 3.4 0.11 12.4 0.8 2.1 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) SlyX PF04102.7 gi|148643105|ref|YP_001273618.1| - 0.027 14.8 0.6 0.027 14.8 0.4 3.3 1 1 2 3 3 3 0 SlyX NUDIX_4 PF14815.1 gi|148643105|ref|YP_001273618.1| - 0.083 12.3 0.2 0.28 10.6 0.1 1.8 1 1 1 2 2 2 0 NUDIX domain Atg14 PF10186.4 gi|148643105|ref|YP_001273618.1| - 0.34 9.7 25.7 0.12 11.3 6.7 2.7 1 1 2 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 TPR_MLP1_2 PF07926.7 gi|148643105|ref|YP_001273618.1| - 0.67 9.7 31.7 0.061 13.0 14.9 2.4 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Spc7 PF08317.6 gi|148643105|ref|YP_001273618.1| - 1.4 7.4 34.0 0.15 10.6 5.9 2.7 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF641 PF04859.7 gi|148643105|ref|YP_001273618.1| - 6.7 6.4 22.8 0.14 11.9 3.6 3.2 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) Tox-REase-2 PF15646.1 gi|148643105|ref|YP_001273618.1| - 8.8 6.2 10.2 1.5 8.7 3.0 2.4 1 1 2 3 3 3 0 Restriction endonuclease fold toxin 2 Phage_GP20 PF06810.6 gi|148643105|ref|YP_001273618.1| - 9.9 5.5 42.5 0.022 14.1 8.7 3.1 1 1 2 3 3 3 0 Phage minor structural protein GP20 Nop PF01798.13 gi|148643106|ref|YP_001273619.1| - 6.4e-53 178.0 0.1 1.7e-52 176.6 0.0 1.7 2 0 0 2 2 2 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|148643106|ref|YP_001273619.1| - 6.4e-17 61.1 1.2 1.8e-16 59.6 0.8 1.9 1 0 0 1 1 1 1 NOSIC (NUC001) domain Gag_p30 PF02093.11 gi|148643106|ref|YP_001273619.1| - 0.00025 20.3 0.0 0.00061 19.0 0.0 1.7 2 0 0 2 2 2 1 Gag P30 core shell protein Dna2 PF08696.6 gi|148643106|ref|YP_001273619.1| - 0.023 14.0 4.3 1.7 7.9 0.1 2.6 1 1 1 2 2 2 0 DNA replication factor Dna2 Sds3 PF08598.6 gi|148643106|ref|YP_001273619.1| - 0.98 8.9 13.5 6.2 6.2 9.0 2.3 1 1 0 1 1 1 0 Sds3-like Fibrillarin PF01269.12 gi|148643107|ref|YP_001273620.1| - 2.2e-83 278.6 0.2 2.4e-83 278.5 0.2 1.0 1 0 0 1 1 1 1 Fibrillarin Methyltransf_18 PF12847.2 gi|148643107|ref|YP_001273620.1| - 0.00021 21.8 0.0 0.00034 21.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|148643107|ref|YP_001273620.1| - 0.029 14.8 0.0 4.9 7.7 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain DREV PF05219.7 gi|148643107|ref|YP_001273620.1| - 0.034 13.0 0.0 0.077 11.8 0.0 1.6 1 1 0 1 1 1 0 DREV methyltransferase Methyltransf_17 PF12692.2 gi|148643107|ref|YP_001273620.1| - 0.08 12.6 0.0 0.1 12.2 0.0 1.3 1 1 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase DFP PF04127.10 gi|148643108|ref|YP_001273621.1| - 1.4e-54 184.4 0.3 1.7e-54 184.2 0.2 1.0 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein NAD_binding_10 PF13460.1 gi|148643108|ref|YP_001273621.1| - 0.0034 17.4 0.0 0.0043 17.0 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding eIF-1a PF01176.14 gi|148643108|ref|YP_001273621.1| - 0.088 12.2 0.3 0.2 11.1 0.2 1.5 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 DUF2258 PF10015.4 gi|148643108|ref|YP_001273621.1| - 1.2 9.0 3.7 0.75 9.6 0.2 2.4 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2258) Flavoprotein PF02441.14 gi|148643109|ref|YP_001273622.1| - 3.1e-23 81.8 0.6 4.2e-23 81.4 0.4 1.2 1 0 0 1 1 1 1 Flavoprotein DUF3139 PF11337.3 gi|148643110|ref|YP_001273623.1| - 0.028 14.7 0.4 0.07 13.4 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) NQRA PF05896.6 gi|148643110|ref|YP_001273623.1| - 0.067 12.3 0.0 0.092 11.9 0.0 1.3 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DUF2411 PF10304.4 gi|148643110|ref|YP_001273623.1| - 0.096 12.2 0.2 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2411) PDT PF00800.13 gi|148643112|ref|YP_001273625.1| - 1.1e-59 201.0 0.0 1.4e-59 200.7 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|148643112|ref|YP_001273625.1| - 7e-09 34.9 0.0 1.1e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 ACT domain CBS PF00571.23 gi|148643113|ref|YP_001273626.1| - 1e-52 175.6 16.8 2.2e-15 56.1 0.0 4.1 4 0 0 4 4 4 4 CBS domain Spt5-NGN PF03439.8 gi|148643113|ref|YP_001273626.1| - 0.021 14.5 0.5 0.086 12.5 0.0 2.2 2 0 0 2 2 2 0 Early transcription elongation factor of RNA pol II, NGN section CBS PF00571.23 gi|148643114|ref|YP_001273627.1| - 8.5e-55 182.3 3.8 2.8e-14 52.6 0.2 4.1 4 0 0 4 4 4 4 CBS domain YopE PF03545.8 gi|148643114|ref|YP_001273627.1| - 0.091 12.7 0.0 1.6 8.6 0.0 2.7 2 1 0 2 2 2 0 Yersinia virulence determinant (YopE) Fer4_14 PF13394.1 gi|148643115|ref|YP_001273628.1| - 7.2e-20 71.2 0.1 1.5e-19 70.1 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|148643115|ref|YP_001273628.1| - 2.9e-19 69.8 0.0 3.6e-19 69.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|148643115|ref|YP_001273628.1| - 1.1e-15 57.9 0.3 2.7e-15 56.7 0.1 1.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain PTPS PF01242.14 gi|148643116|ref|YP_001273629.1| - 6.6e-28 96.8 0.0 7.7e-28 96.6 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF366 PF04017.7 gi|148643117|ref|YP_001273630.1| - 1.5e-59 200.3 0.6 1.7e-59 200.1 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF366) NTP_transf_2 PF01909.18 gi|148643118|ref|YP_001273631.1| - 8.1e-05 22.8 0.6 0.00026 21.2 0.1 2.0 2 0 0 2 2 2 1 Nucleotidyltransferase domain HCNGP PF07818.8 gi|148643118|ref|YP_001273631.1| - 0.022 14.7 0.0 0.088 12.8 0.0 2.0 2 0 0 2 2 2 0 HCNGP-like protein Phage_int_SAM_5 PF13102.1 gi|148643118|ref|YP_001273631.1| - 0.078 12.9 0.3 4.8 7.1 0.0 2.5 2 0 0 2 2 2 0 Phage integrase SAM-like domain Cas_Cas4 PF01930.12 gi|148643119|ref|YP_001273632.1| - 2.8e-13 50.0 5.7 2.2e-11 43.9 0.2 2.5 1 1 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|148643119|ref|YP_001273632.1| - 8.6e-09 35.1 0.1 1.3e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Peptidase_M9_N PF08453.5 gi|148643119|ref|YP_001273632.1| - 0.038 13.3 1.9 0.056 12.7 1.3 1.2 1 0 0 1 1 1 0 Peptidase family M9 N-terminal ACT_4 PF13291.1 gi|148643120|ref|YP_001273633.1| - 5.3e-07 29.8 2.0 5.3e-07 29.8 1.4 1.9 2 0 0 2 2 2 1 ACT domain Transketolase_C PF02780.15 gi|148643120|ref|YP_001273633.1| - 0.02 14.8 0.8 0.46 10.4 0.0 2.1 1 1 1 2 2 2 0 Transketolase, C-terminal domain ACT PF01842.20 gi|148643120|ref|YP_001273633.1| - 0.03 13.7 2.5 0.15 11.6 0.3 2.9 1 1 0 2 2 2 0 ACT domain DUF530 PF04409.7 gi|148643120|ref|YP_001273633.1| - 0.058 11.4 0.3 0.081 11.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF530) DUF3115 PF11312.3 gi|148643120|ref|YP_001273633.1| - 0.068 12.0 0.1 0.093 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3115) Ehbp PF10622.4 gi|148643121|ref|YP_001273634.1| - 2.4e-43 145.9 0.6 2.6e-43 145.8 0.4 1.0 1 0 0 1 1 1 1 Energy-converting hydrogenase B subunit P (EhbP) NADHdh PF00146.16 gi|148643122|ref|YP_001273635.1| - 2.4e-11 43.2 23.7 1.9e-10 40.3 16.4 1.9 1 1 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|148643123|ref|YP_001273636.1| - 1.5e-26 93.0 0.2 4.5e-24 84.8 0.0 2.9 1 1 2 3 3 3 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|148643123|ref|YP_001273636.1| - 1.8e-18 66.6 0.0 7.6e-14 51.3 0.0 3.1 2 1 0 3 3 3 3 Nickel-dependent hydrogenase Oxidored_q6 PF01058.17 gi|148643124|ref|YP_001273637.1| - 1.5e-25 89.3 0.2 1.8e-25 89.0 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|148643125|ref|YP_001273638.1| - 8.1e-13 47.3 14.8 1.6e-09 36.9 4.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148643125|ref|YP_001273638.1| - 3.4e-12 46.4 18.8 4.8e-08 33.1 6.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148643125|ref|YP_001273638.1| - 7.8e-10 38.6 27.0 2.3e-06 27.5 6.9 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148643125|ref|YP_001273638.1| - 2.5e-09 36.8 8.1 7.6e-08 32.0 7.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148643125|ref|YP_001273638.1| - 2.5e-09 36.8 7.5 4.5e-06 26.4 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148643125|ref|YP_001273638.1| - 2.5e-09 37.3 7.4 6.3e-09 36.0 5.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148643125|ref|YP_001273638.1| - 1.4e-08 34.9 1.1 0.0024 18.1 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148643125|ref|YP_001273638.1| - 2.7e-08 33.3 12.8 3.5e-07 29.8 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148643125|ref|YP_001273638.1| - 4.2e-08 33.8 6.7 2.7e-07 31.2 5.4 1.8 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|148643125|ref|YP_001273638.1| - 6.5e-08 32.8 3.2 0.00013 22.3 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|148643125|ref|YP_001273638.1| - 3.8e-07 30.5 5.6 5.7e-06 26.7 0.4 2.3 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|148643125|ref|YP_001273638.1| - 1.4e-06 27.8 14.0 7.5e-05 22.4 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148643125|ref|YP_001273638.1| - 2e-06 27.6 11.2 0.0027 17.8 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|148643125|ref|YP_001273638.1| - 7.1e-05 23.1 6.0 0.004 17.5 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|148643125|ref|YP_001273638.1| - 0.0024 18.3 7.8 0.0024 18.3 5.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.22 gi|148643126|ref|YP_001273639.1| - 1.3e-63 208.2 125.0 3.4e-08 32.7 0.9 13.6 14 0 0 14 14 14 13 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148643126|ref|YP_001273639.1| - 1.9e-48 162.5 101.5 1.2e-09 38.4 8.1 8.8 7 1 3 10 10 10 10 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148643126|ref|YP_001273639.1| - 6.4e-39 131.5 115.9 7.5e-08 32.0 9.3 8.9 4 3 7 11 11 11 11 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148643126|ref|YP_001273639.1| - 6.9e-39 130.1 131.1 1.9e-05 24.3 2.6 13.4 13 0 0 13 13 13 12 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148643126|ref|YP_001273639.1| - 2.8e-36 123.5 119.5 2.5e-06 27.6 9.4 9.9 5 4 7 12 12 12 12 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148643126|ref|YP_001273639.1| - 2.4e-35 121.0 101.2 4.3e-05 24.1 5.2 13.6 10 4 4 14 14 14 12 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|148643126|ref|YP_001273639.1| - 4.4e-29 100.1 108.6 4.1e-07 29.7 5.3 9.4 5 3 4 10 10 10 8 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148643126|ref|YP_001273639.1| - 7e-29 98.0 122.0 0.00044 19.9 2.2 13.4 13 0 0 13 13 13 12 4Fe-4S binding domain Fer4_8 PF13183.1 gi|148643126|ref|YP_001273639.1| - 2.8e-25 88.0 112.8 3.5e-06 26.9 5.8 10.5 1 1 11 13 13 13 12 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148643126|ref|YP_001273639.1| - 6.5e-20 71.2 115.5 1e-07 32.1 3.7 12.1 7 5 4 11 11 11 8 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|148643126|ref|YP_001273639.1| - 1.9e-18 66.7 90.5 0.017 15.6 1.5 13.5 12 1 1 13 13 13 8 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|148643126|ref|YP_001273639.1| - 3.1e-18 64.4 126.6 0.00059 19.9 1.5 13.6 14 0 0 14 14 14 12 4Fe-4S binding domain Fer4_13 PF13370.1 gi|148643126|ref|YP_001273639.1| - 4.7e-14 52.5 103.7 0.011 16.1 0.2 13.3 13 0 0 13 13 13 10 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|148643126|ref|YP_001273639.1| - 2e-10 40.4 154.2 0.055 14.0 2.6 13.6 14 0 0 14 14 13 10 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148643126|ref|YP_001273639.1| - 8.7e-07 29.2 128.5 0.073 13.5 1.8 13.2 5 3 8 13 13 13 7 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|148643126|ref|YP_001273639.1| - 1.2e-06 28.3 73.1 0.00025 20.8 5.3 7.1 3 3 5 8 8 8 4 4Fe-4S dicluster domain DUF3429 PF11911.3 gi|148643127|ref|YP_001273640.1| - 0.0085 16.0 3.6 0.009 15.9 2.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3429) DUF554 PF04474.7 gi|148643127|ref|YP_001273640.1| - 0.011 14.8 1.3 0.013 14.7 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF554) DUF1206 PF06724.6 gi|148643127|ref|YP_001273640.1| - 0.24 11.2 0.2 0.24 11.2 0.1 2.4 2 1 0 2 2 2 0 Domain of Unknown Function (DUF1206) NnrS PF05940.7 gi|148643127|ref|YP_001273640.1| - 0.24 10.2 3.4 0.27 10.1 2.3 1.0 1 0 0 1 1 1 0 NnrS protein Acyl_transf_3 PF01757.17 gi|148643127|ref|YP_001273640.1| - 0.46 9.2 8.3 0.47 9.2 5.8 1.0 1 0 0 1 1 1 0 Acyltransferase family FTR1 PF03239.9 gi|148643127|ref|YP_001273640.1| - 0.47 9.3 3.7 0.51 9.2 2.6 1.2 1 0 0 1 1 1 0 Iron permease FTR1 family Rhomboid PF01694.17 gi|148643127|ref|YP_001273640.1| - 1.3 9.0 6.5 2 8.4 4.5 1.4 1 1 0 1 1 1 0 Rhomboid family Herpes_pp38 PF04846.8 gi|148643127|ref|YP_001273640.1| - 3.5 7.0 5.2 0.41 9.9 0.5 1.7 2 0 0 2 2 2 0 Herpesvirus pp38 phosphoprotein FtsX PF02687.16 gi|148643127|ref|YP_001273640.1| - 5.1 6.8 14.4 0.37 10.5 3.4 2.0 1 1 0 2 2 2 0 FtsX-like permease family MnhB PF04039.8 gi|148643128|ref|YP_001273641.1| - 1.9e-28 99.0 17.5 2.2e-28 98.7 12.2 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.4 gi|148643129|ref|YP_001273642.1| - 0.13 11.6 1.6 0.13 11.6 0.5 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2106) COX1 PF00115.15 gi|148643130|ref|YP_001273643.1| - 0.007 15.0 0.8 0.008 14.8 0.5 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I EcsB PF05975.7 gi|148643130|ref|YP_001273643.1| - 0.033 12.6 4.0 0.041 12.3 2.8 1.1 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB PRA1 PF03208.14 gi|148643130|ref|YP_001273643.1| - 0.16 11.3 6.7 0.2 11.0 4.6 1.1 1 0 0 1 1 1 0 PRA1 family protein PIG-Y PF15159.1 gi|148643130|ref|YP_001273643.1| - 0.37 11.0 5.0 0.17 12.0 1.9 1.6 1 1 1 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y LysE PF01810.13 gi|148643130|ref|YP_001273643.1| - 1.6 7.9 7.4 0.46 9.7 1.3 2.0 1 1 1 2 2 2 0 LysE type translocator Oxidored_q1 PF00361.15 gi|148643131|ref|YP_001273644.1| - 1.9e-34 119.1 26.9 1.9e-34 119.1 18.6 2.6 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|148643131|ref|YP_001273644.1| - 2.9e-07 29.8 10.8 2.9e-07 29.8 7.5 2.8 2 1 0 3 3 3 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.19 gi|148643132|ref|YP_001273645.1| - 6e-19 67.4 4.9 7.7e-19 67.0 3.4 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.4 gi|148643132|ref|YP_001273645.1| - 0.00064 19.4 4.3 0.00064 19.4 3.0 2.0 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) DUF4418 PF14387.1 gi|148643132|ref|YP_001273645.1| - 7.6 6.3 7.7 1.4 8.7 1.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) DUF4040 PF13244.1 gi|148643133|ref|YP_001273646.1| - 1.8e-18 66.3 8.4 2e-18 66.1 5.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) EamA PF00892.15 gi|148643133|ref|YP_001273646.1| - 0.47 10.4 9.4 0.56 10.2 6.5 1.1 1 0 0 1 1 1 0 EamA-like transporter family DUF4199 PF13858.1 gi|148643133|ref|YP_001273646.1| - 0.54 10.1 5.2 1.6 8.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) 5TM-5TMR_LYT PF07694.7 gi|148643133|ref|YP_001273646.1| - 1.4 8.2 8.0 2 7.7 5.5 1.2 1 1 0 1 1 1 0 5TMR of 5TMR-LYT DUF485 PF04341.7 gi|148643133|ref|YP_001273646.1| - 3 7.6 6.9 5.3 6.8 4.8 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF485 PrgI PF12666.2 gi|148643133|ref|YP_001273646.1| - 6.4 7.0 7.4 14 5.8 1.9 2.0 1 1 1 2 2 2 0 PrgI family protein PhaG_MnhG_YufB PF03334.9 gi|148643134|ref|YP_001273647.1| - 2.1e-11 43.7 6.6 3.3e-11 43.0 4.6 1.3 1 0 0 1 1 1 1 Na+/H+ antiporter subunit SbmA_BacA PF05992.7 gi|148643134|ref|YP_001273647.1| - 0.096 11.8 2.5 1.6 7.8 1.3 2.0 2 0 0 2 2 2 0 SbmA/BacA-like family MrpF_PhaF PF04066.8 gi|148643135|ref|YP_001273648.1| - 6.9e-05 23.0 5.9 6.9e-05 23.0 4.1 2.2 1 1 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2723 PF11028.3 gi|148643135|ref|YP_001273648.1| - 0.055 12.9 7.4 0.067 12.6 5.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2723) DUF2157 PF09925.4 gi|148643135|ref|YP_001273648.1| - 0.098 12.2 5.7 0.12 11.9 3.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) MNHE PF01899.11 gi|148643136|ref|YP_001273649.1| - 4e-20 72.0 0.1 4.2e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit SBF PF01758.11 gi|148643138|ref|YP_001273651.1| - 7.5e-23 80.9 13.4 7.5e-23 80.9 9.3 2.2 1 1 1 2 2 2 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|148643138|ref|YP_001273651.1| - 3.8e-18 65.6 17.3 4.4e-18 65.4 12.0 1.0 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) DUF457 PF04307.9 gi|148643139|ref|YP_001273652.1| - 1e-17 63.9 27.0 1.5e-15 56.8 18.7 2.2 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2142 PF09913.4 gi|148643139|ref|YP_001273652.1| - 1.3 7.6 24.5 0.043 12.4 2.5 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2142) AstE_AspA PF04952.9 gi|148643140|ref|YP_001273653.1| - 1.1e-10 40.8 0.2 1.8e-10 40.1 0.2 1.4 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|148643140|ref|YP_001273653.1| - 0.013 15.0 0.1 0.035 13.6 0.1 1.6 1 1 0 1 1 1 0 Zinc carboxypeptidase AAA_12 PF13087.1 gi|148643141|ref|YP_001273654.1| - 1.2e-60 204.3 0.5 1.2e-60 204.3 0.3 1.9 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|148643141|ref|YP_001273654.1| - 1e-59 201.9 1.9 1e-59 201.9 1.3 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|148643141|ref|YP_001273654.1| - 1.4e-11 44.3 0.0 2.4e-07 30.5 0.0 2.7 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.1 gi|148643141|ref|YP_001273654.1| - 2e-10 40.2 0.0 5.4e-10 38.8 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|148643141|ref|YP_001273654.1| - 2.8e-09 36.8 0.0 0.00041 19.9 0.0 3.4 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase ResIII PF04851.10 gi|148643141|ref|YP_001273654.1| - 3.6e-06 26.9 14.0 5.1e-06 26.4 6.2 3.0 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|148643141|ref|YP_001273654.1| - 5.3e-06 26.5 1.9 0.0018 18.3 0.0 3.7 4 0 0 4 4 3 1 AAA domain Helicase_RecD PF05127.9 gi|148643141|ref|YP_001273654.1| - 1.5e-05 24.6 0.7 0.0037 16.9 0.0 2.8 3 0 0 3 3 2 1 Helicase T2SE PF00437.15 gi|148643141|ref|YP_001273654.1| - 2.9e-05 23.0 0.0 8.1e-05 21.6 0.0 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein PIF1 PF05970.9 gi|148643141|ref|YP_001273654.1| - 0.0005 19.1 0.3 0.0096 14.9 0.0 2.7 3 0 0 3 3 3 1 PIF1-like helicase PhoH PF02562.11 gi|148643141|ref|YP_001273654.1| - 0.0013 18.0 0.0 0.44 9.7 0.0 2.7 2 1 0 2 2 2 1 PhoH-like protein Phe_tRNA-synt_N PF02912.13 gi|148643141|ref|YP_001273654.1| - 0.014 15.1 0.3 0.068 12.9 0.2 2.2 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain UvrD_C_2 PF13538.1 gi|148643141|ref|YP_001273654.1| - 0.017 15.2 0.0 0.074 13.1 0.0 2.2 2 0 0 2 2 1 0 UvrD-like helicase C-terminal domain TrwB_AAD_bind PF10412.4 gi|148643141|ref|YP_001273654.1| - 0.021 13.4 0.0 0.044 12.3 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain SRP54 PF00448.17 gi|148643141|ref|YP_001273654.1| - 0.021 14.2 0.8 0.54 9.6 0.0 3.1 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.12 gi|148643141|ref|YP_001273654.1| - 0.025 14.0 0.0 0.095 12.1 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|148643141|ref|YP_001273654.1| - 0.026 14.0 0.1 0.15 11.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain ATP-synt_ab PF00006.20 gi|148643141|ref|YP_001273654.1| - 0.029 13.8 0.0 0.089 12.2 0.0 1.9 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|148643141|ref|YP_001273654.1| - 0.032 14.2 0.0 0.084 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain Myb_DNA-bind_3 PF12776.2 gi|148643141|ref|YP_001273654.1| - 0.1 13.2 1.7 0.32 11.6 0.3 2.5 2 0 0 2 2 1 0 Myb/SANT-like DNA-binding domain DivIC PF04977.10 gi|148643141|ref|YP_001273654.1| - 0.14 11.6 10.2 0.42 10.1 0.2 4.2 4 1 0 4 4 4 0 Septum formation initiator TK PF00265.13 gi|148643141|ref|YP_001273654.1| - 0.27 10.7 4.7 3.6 7.1 0.0 2.9 3 0 0 3 3 3 0 Thymidine kinase AAA_14 PF13173.1 gi|148643141|ref|YP_001273654.1| - 0.41 10.5 0.1 0.41 10.5 0.0 3.6 4 0 0 4 4 4 0 AAA domain DUF2628 PF10947.3 gi|148643142|ref|YP_001273655.1| - 0.075 12.8 0.3 0.08 12.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF4012 PF13196.1 gi|148643143|ref|YP_001273656.1| - 2.8e-22 79.4 0.1 3.9e-22 78.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4012) LytR_cpsA_psr PF03816.9 gi|148643143|ref|YP_001273656.1| - 0.1 12.4 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Cell envelope-related transcriptional attenuator domain DUF3149 PF11346.3 gi|148643143|ref|YP_001273656.1| - 0.17 11.4 6.6 0.32 10.6 4.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) Arginosuc_synth PF00764.14 gi|148643144|ref|YP_001273657.1| - 6.5e-163 542.2 1.3 7.5e-163 542.0 0.9 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|148643144|ref|YP_001273657.1| - 1.5e-07 31.2 0.0 2.6e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|148643144|ref|YP_001273657.1| - 5.3e-05 22.5 0.1 9.5e-05 21.7 0.1 1.6 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|148643144|ref|YP_001273657.1| - 0.0023 16.5 0.0 0.0034 15.9 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|148643144|ref|YP_001273657.1| - 0.049 12.5 0.1 0.099 11.5 0.0 1.5 1 0 0 1 1 1 0 NAD synthase ATP_bind_3 PF01171.15 gi|148643144|ref|YP_001273657.1| - 0.11 11.9 0.1 0.35 10.3 0.0 1.9 2 1 0 2 2 2 0 PP-loop family ThiI PF02568.9 gi|148643144|ref|YP_001273657.1| - 0.12 11.8 0.3 0.77 9.1 0.2 2.1 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) MIP PF00230.15 gi|148643145|ref|YP_001273658.1| - 2.5e-54 184.1 20.0 3e-54 183.8 13.9 1.0 1 0 0 1 1 1 1 Major intrinsic protein NADH_dh_m_C1 PF15088.1 gi|148643145|ref|YP_001273658.1| - 0.49 9.9 4.0 0.27 10.7 0.2 2.5 3 0 0 3 3 3 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial DUF3021 PF11457.3 gi|148643145|ref|YP_001273658.1| - 1.2 9.0 9.6 0.65 9.8 0.2 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3021) DUF2193 PF09959.4 gi|148643146|ref|YP_001273659.1| - 2e-293 973.0 1.6 2.2e-293 972.9 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) SIR2 PF02146.12 gi|148643147|ref|YP_001273660.1| - 4.7e-47 159.9 0.0 6.3e-47 159.5 0.0 1.2 1 0 0 1 1 1 1 Sir2 family zf-DBF PF07535.7 gi|148643147|ref|YP_001273660.1| - 0.15 11.7 2.4 0.31 10.7 1.7 1.5 1 0 0 1 1 1 0 DBF zinc finger DUF3139 PF11337.3 gi|148643149|ref|YP_001273662.1| - 0.002 18.3 1.0 0.0025 18.0 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3139) ODV-E18 PF10717.4 gi|148643149|ref|YP_001273662.1| - 0.015 14.6 1.1 0.017 14.5 0.8 1.2 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DUF4307 PF14155.1 gi|148643149|ref|YP_001273662.1| - 0.048 13.4 0.2 0.048 13.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) OppC_N PF12911.2 gi|148643149|ref|YP_001273662.1| - 0.076 12.3 0.7 0.087 12.2 0.5 1.2 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Ly49 PF08391.5 gi|148643149|ref|YP_001273662.1| - 0.09 12.9 0.1 0.09 12.9 0.1 1.1 1 0 0 1 1 1 0 Ly49-like protein, N-terminal region DUF1510 PF07423.6 gi|148643149|ref|YP_001273662.1| - 0.093 12.0 0.9 0.099 11.9 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) YhhN PF07947.9 gi|148643149|ref|YP_001273662.1| - 0.095 12.0 0.1 0.099 12.0 0.1 1.1 1 0 0 1 1 1 0 YhhN-like protein DUF929 PF06053.6 gi|148643149|ref|YP_001273662.1| - 0.11 11.6 1.7 0.1 11.6 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF929) Baculo_11_kDa PF06143.6 gi|148643149|ref|YP_001273662.1| - 0.14 11.5 1.0 0.18 11.1 0.7 1.2 1 0 0 1 1 1 0 Baculovirus 11 kDa family SfsA PF03749.8 gi|148643150|ref|YP_001273663.1| - 3.7e-64 216.1 0.0 1e-63 214.6 0.0 1.5 1 1 0 1 1 1 1 Sugar fermentation stimulation protein Carb_kinase PF01256.12 gi|148643151|ref|YP_001273664.1| - 3.9e-51 173.6 1.7 5.3e-51 173.2 1.2 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|148643151|ref|YP_001273664.1| - 2.8e-46 157.1 0.0 2.2e-45 154.3 0.0 2.2 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|148643151|ref|YP_001273664.1| - 8.8e-06 25.0 0.0 1.9e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|148643151|ref|YP_001273664.1| - 0.00028 20.1 0.0 0.0005 19.3 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Eno-Rase_NADH_b PF12242.3 gi|148643151|ref|YP_001273664.1| - 0.05 13.3 0.3 0.16 11.8 0.2 1.8 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FTR_C PF02741.10 gi|148643152|ref|YP_001273665.1| - 3.9e-66 221.4 3.2 6.3e-66 220.7 2.3 1.3 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.13 gi|148643152|ref|YP_001273665.1| - 4.2e-62 208.1 0.0 7.4e-62 207.3 0.0 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase BMC PF00936.14 gi|148643152|ref|YP_001273665.1| - 0.086 12.5 2.6 0.12 12.0 0.1 2.4 2 0 0 2 2 2 0 BMC domain DDE_Tnp_IS240 PF13610.1 gi|148643153|ref|YP_001273666.1| - 9.6e-08 32.0 0.9 9.6e-08 32.0 0.6 2.6 1 1 1 2 2 2 1 DDE domain MULE PF10551.4 gi|148643153|ref|YP_001273666.1| - 2.7e-06 27.4 0.2 8.8e-06 25.8 0.1 1.9 2 0 0 2 2 2 1 MULE transposase domain zf-ISL3 PF14690.1 gi|148643153|ref|YP_001273666.1| - 0.00041 20.3 3.0 0.0036 17.2 2.1 2.4 1 1 1 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 rve PF00665.21 gi|148643153|ref|YP_001273666.1| - 0.00049 20.2 0.3 0.005 16.9 0.1 2.3 2 0 0 2 2 2 1 Integrase core domain Zn-ribbon_8 PF09723.5 gi|148643153|ref|YP_001273666.1| - 0.083 12.8 2.3 9.6 6.2 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|148643153|ref|YP_001273666.1| - 0.82 9.3 5.5 9.5 5.9 0.5 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) UPF0104 PF03706.8 gi|148643154|ref|YP_001273667.1| - 2.7e-47 161.4 27.6 3.5e-47 161.1 19.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) zf-DHHC PF01529.15 gi|148643154|ref|YP_001273667.1| - 0.32 10.3 3.6 3.3 7.0 0.6 2.5 1 1 1 2 2 2 0 DHHC palmitoyltransferase SUR7 PF06687.7 gi|148643154|ref|YP_001273667.1| - 1.3 8.5 16.4 0.14 11.7 3.8 2.7 2 0 0 2 2 2 0 SUR7/PalI family TrkH PF02386.11 gi|148643155|ref|YP_001273668.1| - 9e-49 165.9 28.4 1.4e-46 158.6 13.8 2.9 2 1 0 2 2 2 2 Cation transport protein TrkA_N PF02254.13 gi|148643156|ref|YP_001273669.1| - 2.7e-33 114.3 0.2 4.8e-33 113.5 0.2 1.4 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|148643156|ref|YP_001273669.1| - 4.7e-07 30.0 0.1 1.9e-06 28.0 0.0 2.0 2 1 1 3 3 3 1 Putative NAD(P)-binding TrkA_C PF02080.16 gi|148643156|ref|YP_001273669.1| - 4.9e-07 29.2 0.0 1.1e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain Pyr_redox PF00070.22 gi|148643156|ref|YP_001273669.1| - 9.9e-05 22.6 1.3 0.00022 21.5 0.2 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|148643156|ref|YP_001273669.1| - 0.00036 20.9 0.4 0.017 15.5 0.1 2.6 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|148643156|ref|YP_001273669.1| - 0.00065 18.7 0.1 0.0018 17.2 0.1 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|148643156|ref|YP_001273669.1| - 0.0018 17.7 0.1 0.0031 16.8 0.1 1.6 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|148643156|ref|YP_001273669.1| - 0.0028 17.0 0.0 0.0058 16.0 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|148643156|ref|YP_001273669.1| - 0.0048 16.6 0.0 0.011 15.4 0.0 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_3 PF01494.14 gi|148643156|ref|YP_001273669.1| - 0.005 15.9 0.1 0.0079 15.2 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|148643156|ref|YP_001273669.1| - 0.0073 15.9 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|148643156|ref|YP_001273669.1| - 0.04 13.9 0.2 0.13 12.2 0.0 1.8 2 1 0 2 2 2 0 NADH(P)-binding XdhC_C PF13478.1 gi|148643156|ref|YP_001273669.1| - 0.053 13.8 0.0 0.075 13.3 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_8 PF13450.1 gi|148643156|ref|YP_001273669.1| - 0.061 13.3 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|148643156|ref|YP_001273669.1| - 0.13 10.8 0.1 0.18 10.4 0.0 1.3 1 1 0 1 1 1 0 Tryptophan halogenase adh_short PF00106.20 gi|148643156|ref|YP_001273669.1| - 0.16 11.9 0.5 1 9.2 0.1 2.3 2 1 0 2 2 2 0 short chain dehydrogenase Lactamase_B PF00753.22 gi|148643157|ref|YP_001273670.1| - 6.1e-21 74.9 5.2 1.1e-20 74.1 3.6 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|148643157|ref|YP_001273670.1| - 9.1e-05 22.0 1.1 0.00017 21.2 0.8 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Hjc PF01870.13 gi|148643158|ref|YP_001273671.1| - 4e-30 103.2 0.0 5.3e-30 102.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Radical_SAM PF04055.16 gi|148643159|ref|YP_001273672.1| - 2.6e-07 30.9 0.0 5.1e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily ALAD PF00490.16 gi|148643159|ref|YP_001273672.1| - 0.061 12.2 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Delta-aminolevulinic acid dehydratase GatB_N PF02934.10 gi|148643161|ref|YP_001273674.1| - 1.1e-92 309.9 0.0 1.7e-92 309.4 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|148643161|ref|YP_001273674.1| - 1e-40 138.8 4.4 6e-40 136.3 1.8 2.2 1 1 1 2 2 2 1 GatB domain CBS PF00571.23 gi|148643162|ref|YP_001273675.1| - 4.3e-30 103.2 3.3 2.8e-15 55.8 0.2 2.3 2 0 0 2 2 2 2 CBS domain ParBc PF02195.13 gi|148643162|ref|YP_001273675.1| - 2.1e-14 53.3 0.1 8.6e-14 51.4 0.0 2.0 2 0 0 2 2 2 1 ParB-like nuclease domain PRC PF05239.11 gi|148643162|ref|YP_001273675.1| - 0.011 15.5 1.8 0.3 10.9 0.0 3.3 3 1 0 3 3 3 0 PRC-barrel domain ParBc_2 PF08857.6 gi|148643162|ref|YP_001273675.1| - 0.013 15.3 0.8 0.066 13.0 0.1 2.2 2 1 0 2 2 2 0 Putative ParB-like nuclease Peptidase_S7 PF00949.16 gi|148643162|ref|YP_001273675.1| - 0.03 13.7 0.0 0.058 12.7 0.0 1.6 1 1 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease PRA-PH PF01503.12 gi|148643163|ref|YP_001273676.1| - 6e-13 48.8 0.5 8.1e-13 48.4 0.3 1.3 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|148643163|ref|YP_001273676.1| - 0.017 15.0 1.9 0.017 15.0 1.3 1.7 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain DUF965 PF06135.7 gi|148643163|ref|YP_001273676.1| - 0.044 13.8 1.1 0.29 11.1 0.0 2.6 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF965) GPAT_N PF14829.1 gi|148643163|ref|YP_001273676.1| - 0.051 13.2 0.1 0.085 12.5 0.0 1.5 1 1 0 1 1 1 0 Glycerol-3-phosphate acyltransferase N-terminal TraF PF13728.1 gi|148643163|ref|YP_001273676.1| - 0.094 12.1 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein SLS PF14611.1 gi|148643163|ref|YP_001273676.1| - 0.098 12.0 0.1 0.11 11.8 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator DUF493 PF04359.9 gi|148643163|ref|YP_001273676.1| - 0.12 12.8 0.3 0.86 10.0 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF493) Cnl2_NKP2 PF09447.5 gi|148643163|ref|YP_001273676.1| - 0.13 11.9 0.6 0.23 11.1 0.1 1.7 2 0 0 2 2 2 0 Cnl2/NKP2 family protein Acetyltransf_1 PF00583.19 gi|148643164|ref|YP_001273677.1| - 2.9e-11 43.2 0.0 4.3e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|148643164|ref|YP_001273677.1| - 1.3e-10 41.3 0.0 1.7e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|148643164|ref|YP_001273677.1| - 7.5e-09 35.6 0.0 2e-08 34.2 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|148643164|ref|YP_001273677.1| - 1.3e-05 25.4 0.0 1.8e-05 24.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|148643164|ref|YP_001273677.1| - 2.4e-05 23.9 0.0 4.3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|148643164|ref|YP_001273677.1| - 9.5e-05 22.4 0.0 0.00036 20.6 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|148643164|ref|YP_001273677.1| - 0.013 15.3 0.0 0.029 14.2 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase AIRC PF00731.15 gi|148643165|ref|YP_001273678.1| - 1.8e-24 85.7 4.0 2.3e-24 85.4 2.8 1.1 1 0 0 1 1 1 1 AIR carboxylase Sua5_yciO_yrdC PF01300.13 gi|148643166|ref|YP_001273679.1| - 8.9e-45 152.1 0.0 2.1e-44 150.8 0.0 1.7 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|148643166|ref|YP_001273679.1| - 2.7e-30 103.4 15.6 3.6e-16 58.2 2.5 2.5 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|148643166|ref|YP_001273679.1| - 1.4e-19 70.0 0.0 3.7e-19 68.6 0.0 1.8 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|148643166|ref|YP_001273679.1| - 0.0074 15.8 0.2 0.037 13.5 0.0 2.0 2 0 0 2 2 2 1 Glycoprotease family BcrAD_BadFG PF01869.15 gi|148643166|ref|YP_001273679.1| - 0.0094 15.2 0.1 0.02 14.1 0.1 1.5 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family HTH_5 PF01022.15 gi|148643167|ref|YP_001273680.1| - 3.2e-13 49.1 0.2 7e-13 48.0 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|148643167|ref|YP_001273680.1| - 2.9e-07 30.1 0.0 5.6e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|148643167|ref|YP_001273680.1| - 0.0002 21.0 0.1 0.00046 19.8 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|148643167|ref|YP_001273680.1| - 0.00068 18.9 0.4 0.0013 18.0 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|148643167|ref|YP_001273680.1| - 0.0026 17.4 0.2 0.011 15.4 0.1 2.1 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family IF2_N PF04760.10 gi|148643167|ref|YP_001273680.1| - 0.016 14.8 0.0 0.037 13.6 0.0 1.7 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HxlR PF01638.12 gi|148643167|ref|YP_001273680.1| - 0.038 13.6 0.6 0.19 11.4 0.0 2.1 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HTH_40 PF14493.1 gi|148643167|ref|YP_001273680.1| - 0.11 12.7 0.3 2 8.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_12 PF08461.5 gi|148643167|ref|YP_001273680.1| - 0.12 12.1 0.9 1 9.1 0.0 2.3 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_10 PF04967.7 gi|148643167|ref|YP_001273680.1| - 0.12 11.9 0.6 0.64 9.6 0.1 2.4 2 1 1 3 3 3 0 HTH DNA binding domain GrpE PF01025.14 gi|148643168|ref|YP_001273681.1| - 1.7e-40 138.2 21.2 6.7e-39 133.0 14.7 2.0 1 1 0 1 1 1 1 GrpE Init_tRNA_PT PF04179.7 gi|148643168|ref|YP_001273681.1| - 0.019 13.8 6.9 0.02 13.7 4.8 1.0 1 0 0 1 1 1 0 Initiator tRNA phosphoribosyl transferase Occludin_ELL PF07303.8 gi|148643168|ref|YP_001273681.1| - 0.023 15.4 12.1 0.023 15.4 8.4 2.1 1 1 1 2 2 2 0 Occludin homology domain HAUS-augmin3 PF14932.1 gi|148643168|ref|YP_001273681.1| - 0.11 11.6 12.2 0.18 11.0 8.4 1.5 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF1515 PF07439.6 gi|148643168|ref|YP_001273681.1| - 0.14 11.9 1.4 0.31 10.8 0.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) DUF948 PF06103.6 gi|148643168|ref|YP_001273681.1| - 0.33 10.8 5.3 5.1 7.0 1.8 2.6 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) FAM195 PF14799.1 gi|148643168|ref|YP_001273681.1| - 0.34 10.7 3.9 0.49 10.2 0.0 2.5 1 1 1 2 2 2 0 FAM195 family TMF_TATA_bd PF12325.3 gi|148643168|ref|YP_001273681.1| - 0.35 10.6 17.8 0.22 11.2 8.2 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding AAA_32 PF13654.1 gi|148643168|ref|YP_001273681.1| - 0.39 9.3 8.7 0.46 9.0 6.0 1.3 1 0 0 1 1 1 0 AAA domain DUF885 PF05960.6 gi|148643168|ref|YP_001273681.1| - 0.47 9.5 5.8 0.64 9.1 4.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) Sec34 PF04136.10 gi|148643168|ref|YP_001273681.1| - 0.58 9.8 9.8 0.9 9.2 6.8 1.3 1 0 0 1 1 1 0 Sec34-like family V_ATPase_I PF01496.14 gi|148643168|ref|YP_001273681.1| - 0.75 7.5 9.6 0.88 7.3 6.6 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FCH PF00611.18 gi|148643168|ref|YP_001273681.1| - 0.82 9.8 8.9 1 9.5 1.1 2.6 2 1 1 3 3 3 0 Fes/CIP4, and EFC/F-BAR homology domain Peptidase_S46 PF10459.4 gi|148643168|ref|YP_001273681.1| - 0.96 7.7 7.4 1.1 7.5 5.1 1.0 1 0 0 1 1 1 0 Peptidase S46 Exonuc_VII_L PF02601.10 gi|148643168|ref|YP_001273681.1| - 1.2 8.2 9.1 1.5 7.9 6.3 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Iron_permease PF04120.7 gi|148643168|ref|YP_001273681.1| - 2 8.0 8.1 4.2 6.9 5.6 1.5 1 0 0 1 1 1 0 Low affinity iron permease OmpH PF03938.9 gi|148643168|ref|YP_001273681.1| - 2.1 8.2 18.3 4.8 7.1 12.6 1.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Mu-like_Pro PF10123.4 gi|148643168|ref|YP_001273681.1| - 2.4 7.5 6.3 2.5 7.4 4.4 1.1 1 0 0 1 1 1 0 Mu-like prophage I protein Atg14 PF10186.4 gi|148643168|ref|YP_001273681.1| - 4.5 6.1 11.3 4.8 6.0 7.2 1.5 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 ATP-synt_E PF05680.7 gi|148643168|ref|YP_001273681.1| - 9.3 6.2 10.7 5.4 7.0 5.6 2.0 1 1 1 2 2 2 0 ATP synthase E chain APG6 PF04111.7 gi|148643168|ref|YP_001273681.1| - 9.3 5.1 19.9 12 4.8 13.6 1.3 1 1 0 1 1 1 0 Autophagy protein Apg6 Syntaxin_2 PF14523.1 gi|148643168|ref|YP_001273681.1| - 9.5 6.3 15.4 28 4.7 0.1 2.3 1 1 0 2 2 2 0 Syntaxin-like protein HSP70 PF00012.15 gi|148643169|ref|YP_001273682.1| - 3.2e-223 742.0 19.7 1.3e-202 674.0 11.8 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|148643169|ref|YP_001273682.1| - 6.5e-19 67.7 4.2 4e-18 65.0 2.9 2.3 1 1 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.11 gi|148643169|ref|YP_001273682.1| - 0.015 14.9 0.0 0.032 13.8 0.0 1.6 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain DUF547 PF04784.9 gi|148643169|ref|YP_001273682.1| - 0.19 11.6 0.5 0.71 9.7 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function, DUF547 Duffy_binding PF05424.6 gi|148643169|ref|YP_001273682.1| - 5.8 6.7 10.8 0.58 9.9 3.2 2.4 3 1 0 3 3 3 0 Duffy binding domain CTDII PF01556.13 gi|148643170|ref|YP_001273683.1| - 5.6e-35 119.0 3.8 1.2e-24 85.9 0.4 3.4 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|148643170|ref|YP_001273683.1| - 7e-28 96.1 3.4 1.3e-27 95.3 2.3 1.4 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|148643170|ref|YP_001273683.1| - 6e-16 58.2 15.1 1e-15 57.4 10.5 1.4 1 0 0 1 1 1 1 DnaJ central domain DUF3856 PF12968.2 gi|148643170|ref|YP_001273683.1| - 0.043 13.6 0.0 0.077 12.8 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF3856) HisG_C PF08029.6 gi|148643170|ref|YP_001273683.1| - 0.057 13.3 0.1 0.3 11.0 0.1 2.2 1 1 0 1 1 1 0 HisG, C-terminal domain UPF0223 PF05256.7 gi|148643170|ref|YP_001273683.1| - 0.061 13.4 0.2 0.061 13.4 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0223) DZR PF12773.2 gi|148643170|ref|YP_001273683.1| - 1 9.2 9.3 0.27 11.0 1.2 2.3 2 0 0 2 2 2 0 Double zinc ribbon DUF4399 PF14347.1 gi|148643171|ref|YP_001273684.1| - 3e-23 81.6 10.4 4.9e-05 23.2 0.0 8.0 6 1 1 7 7 7 5 Domain of unknown function (DUF4399) Big_1 PF02369.11 gi|148643171|ref|YP_001273684.1| - 6e-16 58.1 65.3 6.3e-05 22.8 0.7 11.9 7 4 3 10 10 10 7 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|148643171|ref|YP_001273684.1| - 3.5e-12 46.2 48.0 0.00012 22.0 0.9 9.8 10 1 0 10 10 10 5 Carboxypeptidase regulatory-like domain PEGA PF08308.6 gi|148643171|ref|YP_001273684.1| - 2.8 7.8 9.4 0.25 11.1 0.2 4.3 4 0 0 4 4 4 0 PEGA domain DUF4399 PF14347.1 gi|148643172|ref|YP_001273685.1| - 1.4e-24 85.9 6.4 1.6e-05 24.8 0.0 7.4 6 1 1 7 7 7 5 Domain of unknown function (DUF4399) CarboxypepD_reg PF13620.1 gi|148643172|ref|YP_001273685.1| - 3.5e-15 55.8 35.1 4e-06 26.7 1.3 7.8 8 0 0 8 8 8 4 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|148643172|ref|YP_001273685.1| - 1.2e-11 44.3 75.0 4.7e-06 26.4 3.2 10.8 8 3 2 11 11 11 6 Bacterial Ig-like domain (group 1) DUF4198 PF10670.4 gi|148643172|ref|YP_001273685.1| - 0.0003 20.8 7.6 0.85 9.5 0.0 5.2 5 1 0 5 5 5 2 Domain of unknown function (DUF4198) Lsr2 PF11774.3 gi|148643172|ref|YP_001273685.1| - 1.1 9.2 2.9 18 5.3 0.0 4.0 6 0 0 6 6 6 0 Lsr2 DUF4399 PF14347.1 gi|148643173|ref|YP_001273686.1| - 8.8e-44 147.4 7.5 7.9e-12 45.0 0.0 9.8 8 1 2 10 10 10 6 Domain of unknown function (DUF4399) Big_1 PF02369.11 gi|148643173|ref|YP_001273686.1| - 4.5e-23 81.0 41.2 0.0014 18.4 0.4 12.8 11 1 1 12 12 12 10 Bacterial Ig-like domain (group 1) DUF824 PF05688.6 gi|148643173|ref|YP_001273686.1| - 0.06 12.9 4.4 5.6 6.6 0.1 4.5 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) Lsr2 PF11774.3 gi|148643173|ref|YP_001273686.1| - 0.22 11.4 0.2 37 4.2 0.0 4.1 6 0 0 6 6 6 0 Lsr2 NosD PF05048.8 gi|148643174|ref|YP_001273687.1| - 3.6e-05 23.0 33.8 3.6e-05 23.0 23.5 11.3 2 2 5 9 9 9 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|148643174|ref|YP_001273687.1| - 0.00028 20.6 70.5 0.00038 20.2 20.3 12.5 4 4 6 10 10 10 4 Right handed beta helix region DDE_Tnp_IS240 PF13610.1 gi|148643175|ref|YP_001273688.1| - 2.2e-07 30.9 6.5 7.1e-06 26.0 4.5 2.6 1 1 0 1 1 1 1 DDE domain MULE PF10551.4 gi|148643175|ref|YP_001273688.1| - 3.7e-06 27.0 0.2 1.2e-05 25.3 0.1 1.9 2 0 0 2 2 2 1 MULE transposase domain zf-ISL3 PF14690.1 gi|148643175|ref|YP_001273688.1| - 0.00041 20.3 3.0 0.0036 17.2 2.1 2.4 1 1 1 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 rve PF00665.21 gi|148643175|ref|YP_001273688.1| - 0.0019 18.2 0.3 0.019 15.0 0.1 2.3 2 0 0 2 2 2 1 Integrase core domain Zn-ribbon_8 PF09723.5 gi|148643175|ref|YP_001273688.1| - 0.043 13.7 1.9 6.6 6.7 0.0 2.7 2 0 0 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|148643175|ref|YP_001273688.1| - 0.81 9.3 5.5 9.5 5.9 0.5 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF4399 PF14347.1 gi|148643176|ref|YP_001273689.1| - 1.4e-24 85.9 2.9 2.1e-08 34.0 0.1 5.4 3 1 2 5 5 5 4 Domain of unknown function (DUF4399) Beta_helix PF13229.1 gi|148643176|ref|YP_001273689.1| - 5.8e-20 71.6 182.6 1.2e-09 38.1 23.4 10.4 2 2 7 9 9 9 8 Right handed beta helix region Big_1 PF02369.11 gi|148643176|ref|YP_001273689.1| - 5.3e-15 55.1 37.8 8.9e-05 22.3 0.3 8.1 5 2 2 7 7 7 5 Bacterial Ig-like domain (group 1) NosD PF05048.8 gi|148643176|ref|YP_001273689.1| - 6.6e-11 41.8 210.0 0.00014 21.0 40.5 10.0 3 2 4 9 9 9 6 Periplasmic copper-binding protein (NosD) Oxysterol_BP PF01237.13 gi|148643176|ref|YP_001273689.1| - 9.6 4.5 10.2 1.4 7.3 2.8 2.6 2 0 0 2 2 2 0 Oxysterol-binding protein CobN-Mg_chel PF02514.11 gi|148643177|ref|YP_001273690.1| - 1.7e-193 644.9 1.9 8.3e-193 642.7 1.3 1.8 1 1 0 1 1 1 1 CobN/Magnesium Chelatase CarboxypepD_reg PF13620.1 gi|148643177|ref|YP_001273690.1| - 1.1e-10 41.4 0.5 3.7e-10 39.7 0.3 1.9 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|148643177|ref|YP_001273690.1| - 2.2e-05 24.3 0.1 7.6e-05 22.6 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|148643177|ref|YP_001273690.1| - 0.00033 20.3 0.6 0.0016 18.1 0.4 2.3 1 0 0 1 1 1 1 Cna protein B-type domain PEGA PF08308.6 gi|148643177|ref|YP_001273690.1| - 0.021 14.5 0.0 0.066 13.0 0.0 1.8 1 0 0 1 1 1 0 PEGA domain DUF4446 PF14584.1 gi|148643178|ref|YP_001273691.1| - 0.00064 19.5 4.0 0.36 10.6 0.1 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF4446) Prominin PF05478.6 gi|148643178|ref|YP_001273691.1| - 0.0049 14.4 4.4 0.0068 14.0 3.0 1.3 1 0 0 1 1 1 1 Prominin IncA PF04156.9 gi|148643178|ref|YP_001273691.1| - 0.01 15.4 10.5 0.035 13.6 7.2 1.9 1 1 0 1 1 1 0 IncA protein Spectrin PF00435.16 gi|148643178|ref|YP_001273691.1| - 0.016 15.4 2.7 0.016 15.4 1.9 2.0 2 0 0 2 2 2 0 Spectrin repeat UPF0118 PF01594.11 gi|148643178|ref|YP_001273691.1| - 0.018 14.0 0.3 1.3 7.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF20 BLOC1_2 PF10046.4 gi|148643178|ref|YP_001273691.1| - 0.11 12.6 6.2 0.053 13.6 2.4 1.9 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phasin PF05597.6 gi|148643178|ref|YP_001273691.1| - 0.16 11.7 9.1 0.037 13.8 2.0 2.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) EzrA PF06160.7 gi|148643178|ref|YP_001273691.1| - 0.18 9.9 10.0 0.57 8.3 3.1 2.2 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Fzo_mitofusin PF04799.8 gi|148643178|ref|YP_001273691.1| - 0.27 10.5 3.8 0.24 10.7 0.7 2.1 1 1 2 3 3 3 0 fzo-like conserved region NPV_P10 PF05531.7 gi|148643178|ref|YP_001273691.1| - 0.31 11.3 3.6 0.31 11.3 1.2 2.2 2 1 0 2 2 1 0 Nucleopolyhedrovirus P10 protein Allexi_40kDa PF05549.6 gi|148643178|ref|YP_001273691.1| - 0.33 10.1 5.7 0.083 12.1 1.2 1.8 1 1 1 2 2 2 0 Allexivirus 40kDa protein Matrilin_ccoil PF10393.4 gi|148643178|ref|YP_001273691.1| - 0.6 9.5 7.0 2.6 7.4 0.6 3.4 3 1 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin Sas10_Utp3 PF04000.10 gi|148643178|ref|YP_001273691.1| - 0.93 9.7 7.2 1.1 9.5 1.4 2.9 2 2 1 3 3 3 0 Sas10/Utp3/C1D family Osmo_CC PF08946.5 gi|148643178|ref|YP_001273691.1| - 1.3 9.0 6.0 4.4 7.3 1.2 3.1 2 1 1 3 3 3 0 Osmosensory transporter coiled coil Uds1 PF15456.1 gi|148643178|ref|YP_001273691.1| - 1.4 8.9 7.6 0.32 10.9 2.0 2.1 1 1 2 3 3 3 0 Up-regulated During Septation HSBP1 PF06825.7 gi|148643178|ref|YP_001273691.1| - 1.4 8.5 5.8 1.3 8.6 0.1 3.4 2 1 0 2 2 2 0 Heat shock factor binding protein 1 DUF4163 PF13739.1 gi|148643178|ref|YP_001273691.1| - 2.1 9.1 8.1 16 6.3 5.6 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4163) TraF_2 PF13729.1 gi|148643178|ref|YP_001273691.1| - 2.8 6.6 7.8 0.3 9.8 1.2 2.0 1 1 0 2 2 2 0 F plasmid transfer operon, TraF, protein DUF948 PF06103.6 gi|148643178|ref|YP_001273691.1| - 3.2 7.6 11.2 0.45 10.4 1.0 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) TPR_MLP1_2 PF07926.7 gi|148643178|ref|YP_001273691.1| - 4.3 7.0 11.9 9.5 5.9 8.1 1.8 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Syntaxin-6_N PF09177.6 gi|148643178|ref|YP_001273691.1| - 5.3 7.5 9.1 3 8.2 3.0 2.5 2 1 0 2 2 2 0 Syntaxin 6, N-terminal ORF6C PF10552.4 gi|148643178|ref|YP_001273691.1| - 7.1 6.3 8.4 7.5 6.3 1.0 2.6 2 1 1 3 3 3 0 ORF6C domain IncA PF04156.9 gi|148643179|ref|YP_001273692.1| - 0.00016 21.3 5.6 0.00019 21.1 3.9 1.1 1 0 0 1 1 1 1 IncA protein CytochromB561_N PF09786.4 gi|148643179|ref|YP_001273692.1| - 0.0073 14.8 0.7 0.0084 14.6 0.5 1.0 1 0 0 1 1 1 1 Cytochrome B561, N terminal ING PF12998.2 gi|148643179|ref|YP_001273692.1| - 0.026 14.7 3.8 0.026 14.7 2.1 1.4 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding Neur_chan_memb PF02932.11 gi|148643179|ref|YP_001273692.1| - 0.068 13.0 0.3 0.091 12.6 0.2 1.1 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Allexi_40kDa PF05549.6 gi|148643179|ref|YP_001273692.1| - 0.1 11.9 2.1 0.11 11.7 1.5 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein ETRAMP PF09716.5 gi|148643179|ref|YP_001273692.1| - 0.15 12.0 4.4 1.7 8.6 0.2 2.1 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) DUF342 PF03961.8 gi|148643179|ref|YP_001273692.1| - 0.25 9.7 7.7 0.33 9.3 5.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF2681 PF10883.3 gi|148643179|ref|YP_001273692.1| - 0.26 11.5 16.4 0.37 11.0 0.9 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2681) FliJ PF02050.11 gi|148643179|ref|YP_001273692.1| - 0.4 10.7 10.6 0.19 11.8 3.5 2.0 2 0 0 2 2 2 0 Flagellar FliJ protein COG2 PF06148.6 gi|148643179|ref|YP_001273692.1| - 0.76 9.6 8.7 0.11 12.4 3.2 1.6 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 ODV-E18 PF10717.4 gi|148643179|ref|YP_001273692.1| - 1.7 8.1 3.9 3.2 7.2 2.7 1.4 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DUF1049 PF06305.6 gi|148643179|ref|YP_001273692.1| - 2.1 7.9 7.1 3.1 7.3 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1049) Metal_resist PF13801.1 gi|148643179|ref|YP_001273692.1| - 2.1 8.3 4.4 0.68 9.9 0.9 1.7 2 0 0 2 2 2 0 Heavy-metal resistance AAA_23 PF13476.1 gi|148643179|ref|YP_001273692.1| - 6.2 7.0 8.0 7.6 6.8 5.6 1.1 1 0 0 1 1 1 0 AAA domain Endonuc_Holl PF10107.4 gi|148643179|ref|YP_001273692.1| - 9.4 5.9 8.7 0.77 9.4 1.8 1.9 1 1 1 2 2 2 0 Endonuclease related to archaeal Holliday junction resolvase Peptidase_M24 PF00557.19 gi|148643180|ref|YP_001273693.1| - 3.5e-45 154.1 0.0 4e-45 153.9 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 FrhB_FdhB_C PF04432.8 gi|148643181|ref|YP_001273694.1| - 5.5e-46 155.9 0.0 7.6e-46 155.4 0.0 1.1 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|148643181|ref|YP_001273694.1| - 2.2e-29 101.1 0.1 3.7e-29 100.4 0.1 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Oxidored_q6 PF01058.17 gi|148643182|ref|YP_001273695.1| - 7.3e-24 83.8 0.5 7.3e-24 83.8 0.3 1.9 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|148643182|ref|YP_001273695.1| - 9.9e-10 37.6 10.3 2.2e-06 27.0 1.4 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148643182|ref|YP_001273695.1| - 8.7e-08 32.4 10.6 8.7e-08 32.4 7.4 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148643182|ref|YP_001273695.1| - 9.1e-08 31.7 10.6 9.1e-08 31.7 7.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148643182|ref|YP_001273695.1| - 1.3e-06 28.1 20.1 0.00011 21.9 7.7 3.0 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148643182|ref|YP_001273695.1| - 6.2e-06 26.3 9.9 6.2e-06 26.3 6.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148643182|ref|YP_001273695.1| - 3.7e-05 23.3 3.1 3.7e-05 23.3 2.2 4.0 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|148643182|ref|YP_001273695.1| - 5.6e-05 22.8 16.5 0.0002 21.0 0.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|148643182|ref|YP_001273695.1| - 0.0023 17.9 0.9 0.0023 17.9 0.6 3.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148643182|ref|YP_001273695.1| - 0.005 17.0 21.4 0.0053 16.9 1.2 3.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|148643182|ref|YP_001273695.1| - 0.01 16.1 1.6 0.01 16.1 1.1 3.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|148643182|ref|YP_001273695.1| - 0.018 15.7 3.1 0.018 15.7 2.1 3.3 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|148643182|ref|YP_001273695.1| - 0.064 13.8 12.4 0.16 12.5 0.7 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|148643182|ref|YP_001273695.1| - 3.7 7.9 21.8 0.12 12.7 2.4 3.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148643182|ref|YP_001273695.1| - 3.9 7.9 17.7 1.4 9.3 1.8 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain HycI PF01750.13 gi|148643183|ref|YP_001273696.1| - 2.7e-32 111.0 0.1 3.1e-32 110.8 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Prim-Pol PF09250.6 gi|148643183|ref|YP_001273696.1| - 0.072 13.0 0.0 0.089 12.7 0.0 1.1 1 0 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal NiFeSe_Hases PF00374.14 gi|148643184|ref|YP_001273697.1| - 7.2e-56 189.9 0.5 4.2e-26 91.7 0.0 4.1 1 1 3 4 4 4 4 Nickel-dependent hydrogenase NVEALA PF14055.1 gi|148643185|ref|YP_001273698.1| - 0.021 14.5 0.1 0.036 13.7 0.1 1.6 1 1 0 1 1 1 0 NVEALA protein PepSY PF03413.14 gi|148643185|ref|YP_001273698.1| - 0.051 14.2 0.1 0.075 13.6 0.1 1.3 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain DUF2749 PF10907.3 gi|148643185|ref|YP_001273698.1| - 0.13 12.0 0.1 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) P12 PF12669.2 gi|148643185|ref|YP_001273698.1| - 2.8 8.2 0.0 2.8 8.2 0.0 3.0 2 1 0 2 2 2 0 Virus attachment protein p12 family Gly-zipper_OmpA PF13436.1 gi|148643185|ref|YP_001273698.1| - 8 6.1 16.3 20 4.8 11.3 1.8 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain HTH_5 PF01022.15 gi|148643186|ref|YP_001273699.1| - 1.6e-16 59.6 2.8 3.5e-15 55.4 0.7 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|148643186|ref|YP_001273699.1| - 1.8e-08 34.0 0.0 3.2e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|148643186|ref|YP_001273699.1| - 0.0037 17.0 0.4 0.24 11.2 0.1 2.2 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|148643186|ref|YP_001273699.1| - 0.0089 15.7 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Arg_repressor PF01316.16 gi|148643186|ref|YP_001273699.1| - 0.023 14.2 0.0 0.049 13.1 0.0 1.6 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain HTH_24 PF13412.1 gi|148643186|ref|YP_001273699.1| - 0.026 13.9 0.9 1.4 8.3 0.2 2.7 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|148643186|ref|YP_001273699.1| - 0.04 13.9 0.1 0.054 13.5 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|148643186|ref|YP_001273699.1| - 0.046 13.4 0.2 0.076 12.7 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HxlR PF01638.12 gi|148643186|ref|YP_001273699.1| - 0.092 12.3 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|148643186|ref|YP_001273699.1| - 0.11 12.8 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain E1-E2_ATPase PF00122.15 gi|148643187|ref|YP_001273700.1| - 8.7e-52 175.4 1.5 8.7e-52 175.4 1.0 2.5 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|148643187|ref|YP_001273700.1| - 2.4e-38 132.6 0.2 5.1e-38 131.6 0.2 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|148643187|ref|YP_001273700.1| - 1.7e-15 57.6 0.1 5e-15 56.1 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|148643187|ref|YP_001273700.1| - 0.0012 18.5 5.5 0.2 11.1 0.3 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase NicO PF03824.11 gi|148643187|ref|YP_001273700.1| - 1.6 8.0 12.2 0.044 13.0 3.5 2.1 2 0 0 2 2 2 0 High-affinity nickel-transport protein PHP PF02811.14 gi|148643189|ref|YP_001273702.1| - 7.8e-06 25.7 0.0 1.9e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|148643189|ref|YP_001273702.1| - 1.7e-05 24.2 0.0 3.3e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 PHP-associated MADF_DNA_bdg PF10545.4 gi|148643189|ref|YP_001273702.1| - 0.016 15.3 0.0 0.057 13.6 0.0 2.0 1 0 0 1 1 1 0 Alcohol dehydrogenase transcription factor Myb/SANT-like DUF2112 PF09885.4 gi|148643190|ref|YP_001273703.1| - 1.4e-50 170.6 0.0 1.7e-50 170.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) PAC2 PF09754.4 gi|148643191|ref|YP_001273704.1| - 4.5e-55 186.8 0.0 5.1e-55 186.6 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.7 gi|148643192|ref|YP_001273705.1| - 2.4e-25 87.9 1.2 2.7e-25 87.8 0.8 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF1272 PF06906.6 gi|148643192|ref|YP_001273705.1| - 0.00029 20.6 0.9 0.00039 20.2 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) PolC_DP2 PF03833.8 gi|148643192|ref|YP_001273705.1| - 0.0013 16.5 0.3 0.0013 16.5 0.2 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-IS66 PF13005.2 gi|148643192|ref|YP_001273705.1| - 0.0041 17.0 2.2 0.018 14.9 0.0 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 CopK PF11525.3 gi|148643192|ref|YP_001273705.1| - 0.036 13.7 0.4 0.049 13.2 0.0 1.5 2 0 0 2 2 2 0 Copper resistance protein K NRDD PF13597.1 gi|148643192|ref|YP_001273705.1| - 0.072 11.1 0.2 0.063 11.3 0.2 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-ribbon_3 PF13248.1 gi|148643192|ref|YP_001273705.1| - 0.11 11.7 2.8 0.97 8.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|148643192|ref|YP_001273705.1| - 0.12 11.9 5.4 0.36 10.3 0.1 2.5 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.2 gi|148643192|ref|YP_001273705.1| - 0.13 12.1 2.9 0.18 11.6 2.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon RecR PF02132.10 gi|148643192|ref|YP_001273705.1| - 0.16 11.3 0.9 0.22 10.9 0.6 1.2 1 0 0 1 1 1 0 RecR protein zf-NADH-PPase PF09297.6 gi|148643192|ref|YP_001273705.1| - 0.19 11.3 0.8 1.5 8.3 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|148643192|ref|YP_001273705.1| - 0.24 11.1 3.5 3 7.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.7 gi|148643192|ref|YP_001273705.1| - 0.3 10.9 2.7 0.71 9.7 1.8 1.6 1 1 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.1 gi|148643192|ref|YP_001273705.1| - 0.46 10.2 0.3 0.46 10.2 0.2 2.0 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|148643192|ref|YP_001273705.1| - 0.89 9.5 6.2 28 4.7 4.3 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|148643192|ref|YP_001273705.1| - 1 8.9 6.3 0.77 9.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148643192|ref|YP_001273705.1| - 1.3 8.3 4.7 7.2 6.0 0.1 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|148643192|ref|YP_001273705.1| - 5.8 6.7 6.7 7.2 6.4 0.3 2.2 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-TFIIB PF13453.1 gi|148643192|ref|YP_001273705.1| - 5.9 6.1 8.8 4 6.7 1.3 2.3 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-RING_3 PF14369.1 gi|148643192|ref|YP_001273705.1| - 8.3 6.5 7.5 1.7 8.7 0.5 2.1 1 1 1 2 2 2 0 zinc-finger EIF_2_alpha PF07541.7 gi|148643193|ref|YP_001273706.1| - 4.6e-34 116.5 0.1 1.2e-33 115.2 0.0 1.7 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|148643193|ref|YP_001273706.1| - 2.6e-10 40.2 0.1 6.1e-10 39.0 0.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain DUF4473 PF14747.1 gi|148643193|ref|YP_001273706.1| - 0.0066 16.6 0.3 0.019 15.1 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4473) Ribosomal_S27e PF01667.12 gi|148643194|ref|YP_001273707.1| - 1.7e-21 75.5 0.3 1.8e-21 75.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|148643194|ref|YP_001273707.1| - 0.0027 16.9 0.5 0.0038 16.4 0.3 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding FAM72 PF14976.1 gi|148643194|ref|YP_001273707.1| - 0.029 14.2 0.7 0.032 14.0 0.2 1.3 1 1 0 1 1 1 0 FAM72 protein GCC2_GCC3 PF07699.8 gi|148643194|ref|YP_001273707.1| - 0.042 13.4 0.5 0.13 11.9 0.3 1.7 1 1 0 1 1 1 0 GCC2 and GCC3 DUF2180 PF09947.4 gi|148643194|ref|YP_001273707.1| - 0.049 13.3 1.8 0.061 13.0 1.2 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2180) zf-CHY PF05495.7 gi|148643194|ref|YP_001273707.1| - 0.11 12.6 0.3 0.15 12.2 0.2 1.2 1 0 0 1 1 1 0 CHY zinc finger zf-RanBP PF00641.13 gi|148643194|ref|YP_001273707.1| - 0.13 11.3 0.9 3.4 6.8 0.0 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF1922 PF09082.5 gi|148643194|ref|YP_001273707.1| - 0.15 12.1 1.0 0.17 11.9 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) zf-BED PF02892.10 gi|148643194|ref|YP_001273707.1| - 0.2 11.4 4.0 0.19 11.4 0.3 2.1 1 1 1 2 2 2 0 BED zinc finger A2L_zn_ribbon PF08792.5 gi|148643194|ref|YP_001273707.1| - 0.23 10.9 2.4 0.42 10.1 1.7 1.5 1 1 0 1 1 1 0 A2L zinc ribbon domain XPA_N PF01286.13 gi|148643194|ref|YP_001273707.1| - 0.31 10.7 2.5 14 5.4 0.1 2.2 2 0 0 2 2 2 0 XPA protein N-terminal zinc_ribbon_4 PF13717.1 gi|148643194|ref|YP_001273707.1| - 0.44 10.2 2.8 24 4.7 2.3 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|148643194|ref|YP_001273707.1| - 0.53 9.9 2.7 5.7 6.6 0.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DUF2197 PF09963.4 gi|148643194|ref|YP_001273707.1| - 1 9.3 8.7 3.8 7.5 0.8 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) Ribosomal_L44 PF00935.14 gi|148643195|ref|YP_001273708.1| - 1.2e-28 98.8 4.0 1.2e-28 98.8 2.8 1.4 1 1 1 2 2 2 1 Ribosomal protein L44 zf-ribbon_3 PF13248.1 gi|148643195|ref|YP_001273708.1| - 0.002 17.2 0.4 2 7.7 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|148643195|ref|YP_001273708.1| - 0.0037 17.0 4.9 0.0083 15.9 0.3 2.1 1 1 1 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like zf-ISL3 PF14690.1 gi|148643195|ref|YP_001273708.1| - 0.008 16.1 8.2 0.095 12.7 1.7 2.5 3 0 0 3 3 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|148643195|ref|YP_001273708.1| - 0.0089 15.9 2.4 2.2 8.3 0.1 2.3 2 0 0 2 2 2 2 Zinc ribbon domain Elf1 PF05129.8 gi|148643195|ref|YP_001273708.1| - 0.014 15.0 1.0 3.1 7.5 0.1 2.1 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|148643195|ref|YP_001273708.1| - 0.023 15.0 0.1 0.038 14.3 0.0 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_L33 PF00471.15 gi|148643195|ref|YP_001273708.1| - 0.04 14.1 8.6 0.064 13.5 2.9 2.3 2 0 0 2 2 2 0 Ribosomal protein L33 Rpr2 PF04032.11 gi|148643195|ref|YP_001273708.1| - 0.045 13.6 0.6 0.063 13.1 0.4 1.3 1 0 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-trcl PF13451.1 gi|148643195|ref|YP_001273708.1| - 0.052 13.1 1.6 0.52 9.9 0.0 2.4 2 1 0 2 2 2 0 Probable zinc-binding domain Nudix_N_2 PF14803.1 gi|148643195|ref|YP_001273708.1| - 0.085 12.5 0.7 5.7 6.7 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-C4_Topoisom PF01396.14 gi|148643195|ref|YP_001273708.1| - 0.14 11.7 4.6 3.5 7.2 0.4 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-FPG_IleRS PF06827.9 gi|148643195|ref|YP_001273708.1| - 0.15 11.7 3.2 0.47 10.1 0.3 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF1272 PF06906.6 gi|148643195|ref|YP_001273708.1| - 0.2 11.5 1.8 9.3 6.1 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zinc_ribbon_2 PF13240.1 gi|148643195|ref|YP_001273708.1| - 0.21 11.1 8.6 0.8 9.2 1.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.10 gi|148643195|ref|YP_001273708.1| - 0.21 11.3 6.6 1.4 8.7 0.8 2.2 2 0 0 2 2 2 0 BED zinc finger zinc_ribbon_5 PF13719.1 gi|148643195|ref|YP_001273708.1| - 0.25 10.9 3.3 9.6 5.8 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|148643195|ref|YP_001273708.1| - 0.31 10.9 5.3 3.4 7.5 3.7 2.1 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|148643195|ref|YP_001273708.1| - 0.34 10.4 3.5 1.6 8.2 0.8 2.0 2 0 0 2 2 2 0 Transposase zinc-binding domain zf-Mss51 PF13824.1 gi|148643195|ref|YP_001273708.1| - 0.35 10.7 3.6 0.75 9.6 2.5 1.6 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_S27e PF01667.12 gi|148643195|ref|YP_001273708.1| - 0.4 10.2 2.4 1.8 8.1 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein S27 HypA PF01155.14 gi|148643195|ref|YP_001273708.1| - 0.4 10.3 3.7 7.2 6.3 0.3 2.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|148643195|ref|YP_001273708.1| - 0.5 10.2 7.4 7.7 6.4 2.3 2.5 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Ribosomal_L34e PF01199.13 gi|148643195|ref|YP_001273708.1| - 1.1 9.5 4.7 1.7 8.8 1.0 2.0 2 0 0 2 2 2 0 Ribosomal protein L34e Tnp_zf-ribbon_2 PF13842.1 gi|148643195|ref|YP_001273708.1| - 1.3 9.4 9.4 3.3 8.1 1.2 2.3 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-AN1 PF01428.11 gi|148643195|ref|YP_001273708.1| - 3.6 7.5 8.5 15 5.5 0.1 2.3 2 0 0 2 2 2 0 AN1-like Zinc finger zinc_ribbon_4 PF13717.1 gi|148643195|ref|YP_001273708.1| - 4.1 7.1 6.8 12 5.6 0.2 2.5 2 1 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|148643195|ref|YP_001273708.1| - 6 6.5 7.6 14 5.3 0.4 2.7 2 1 1 3 3 3 0 Transcription factor S-II (TFIIS) PCNA_N PF00705.13 gi|148643197|ref|YP_001273710.1| - 5.2e-21 74.4 0.9 5.2e-21 74.4 0.6 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.8 gi|148643197|ref|YP_001273710.1| - 1.3e-08 34.2 0.0 1.6e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.11 gi|148643197|ref|YP_001273710.1| - 6.3e-07 28.4 0.3 0.0046 15.7 0.2 2.2 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 PCNA_C PF02747.10 gi|148643197|ref|YP_001273710.1| - 8.6e-06 25.6 0.2 0.00023 21.0 0.0 2.8 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain DNA_pol3_beta_2 PF02767.11 gi|148643197|ref|YP_001273710.1| - 0.022 14.7 0.1 0.062 13.3 0.0 1.7 2 0 0 2 2 2 0 DNA polymerase III beta subunit, central domain Hus1 PF04005.7 gi|148643197|ref|YP_001273710.1| - 0.098 11.5 0.1 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Hus1-like protein GATase_3 PF07685.9 gi|148643198|ref|YP_001273711.1| - 2e-31 108.7 0.1 2.6e-31 108.3 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain HSNSD PF12062.3 gi|148643198|ref|YP_001273711.1| - 0.024 13.0 0.6 0.034 12.5 0.4 1.1 1 0 0 1 1 1 0 heparan sulfate-N-deacetylase DUF1727 PF08353.5 gi|148643199|ref|YP_001273712.1| - 7e-32 109.4 0.0 1.5e-31 108.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1727) Mur_ligase_M PF08245.7 gi|148643199|ref|YP_001273712.1| - 2.7e-22 79.7 0.7 1.3e-21 77.4 0.5 1.9 1 1 0 1 1 1 1 Mur ligase middle domain zf-ribbon_3 PF13248.1 gi|148643199|ref|YP_001273712.1| - 0.0013 17.8 0.7 0.88 8.8 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|148643199|ref|YP_001273712.1| - 0.0016 18.2 0.5 0.0032 17.2 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|148643199|ref|YP_001273712.1| - 0.0032 16.9 4.3 0.36 10.3 0.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|148643199|ref|YP_001273712.1| - 0.012 15.2 1.0 0.012 15.2 0.7 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|148643199|ref|YP_001273712.1| - 0.014 14.7 1.1 0.36 10.1 0.7 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|148643199|ref|YP_001273712.1| - 0.015 14.9 0.9 0.03 14.0 0.6 1.5 1 0 0 1 1 1 0 Nudix N-terminal C1_1 PF00130.17 gi|148643199|ref|YP_001273712.1| - 0.11 12.2 1.6 0.22 11.2 1.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.2 gi|148643199|ref|YP_001273712.1| - 0.21 11.3 1.4 0.4 10.5 1.0 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-HIT PF04438.11 gi|148643199|ref|YP_001273712.1| - 0.61 9.7 2.7 14 5.3 0.1 2.3 2 0 0 2 2 2 0 HIT zinc finger Trp_syntA PF00290.15 gi|148643201|ref|YP_001273714.1| - 1.5e-93 312.0 0.9 1.9e-93 311.7 0.6 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain BtpA PF03437.10 gi|148643201|ref|YP_001273714.1| - 0.00023 20.5 0.5 0.0012 18.1 0.1 2.1 2 0 0 2 2 2 1 BtpA family His_biosynth PF00977.16 gi|148643201|ref|YP_001273714.1| - 0.00039 19.7 0.3 0.0012 18.1 0.1 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|148643201|ref|YP_001273714.1| - 0.0032 16.7 2.0 0.0045 16.2 0.1 2.1 2 1 0 2 2 2 1 PcrB family TP_methylase PF00590.15 gi|148643201|ref|YP_001273714.1| - 0.035 13.8 0.0 0.44 10.2 0.0 2.1 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases DHquinase_I PF01487.10 gi|148643201|ref|YP_001273714.1| - 0.086 12.4 0.0 0.12 12.0 0.0 1.5 1 1 0 1 1 1 0 Type I 3-dehydroquinase PALP PF00291.20 gi|162330297|ref|YP_001273715.2| - 1.7e-41 142.4 0.8 2.4e-41 141.9 0.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|148643203|ref|YP_001273716.1| - 1.3e-90 302.8 4.8 1.5e-90 302.7 3.3 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|148643203|ref|YP_001273716.1| - 0.00012 21.4 0.5 0.048 12.9 0.0 3.1 1 1 1 3 3 3 2 Histidine biosynthesis protein QRPTase_C PF01729.14 gi|148643203|ref|YP_001273716.1| - 0.00025 20.6 0.6 0.00056 19.4 0.4 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.9 gi|148643203|ref|YP_001273716.1| - 0.0029 16.6 0.2 0.093 11.6 0.1 2.3 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.9 gi|148643203|ref|YP_001273716.1| - 0.043 12.9 0.0 7.1 5.6 0.0 2.5 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|148643203|ref|YP_001273716.1| - 0.055 12.7 2.8 0.17 11.1 0.1 2.5 1 1 3 4 4 4 0 PcrB family CitX PF03802.9 gi|148643203|ref|YP_001273716.1| - 0.083 12.3 0.5 0.25 10.7 0.1 1.9 2 0 0 2 2 2 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase Glycos_transf_3 PF00591.16 gi|148643204|ref|YP_001273717.1| - 1.2e-99 332.8 1.3 5.4e-99 330.6 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|148643204|ref|YP_001273717.1| - 2.3e-24 84.7 1.4 3.9e-24 84.0 1.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain GATase PF00117.23 gi|148643205|ref|YP_001273718.1| - 1.9e-55 187.3 0.0 2.1e-55 187.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|148643205|ref|YP_001273718.1| - 1.9e-12 47.0 0.0 2.8e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|148643205|ref|YP_001273718.1| - 0.0038 16.8 0.0 0.0052 16.4 0.0 1.4 1 1 0 1 1 1 1 SNO glutamine amidotransferase family HTS PF04204.11 gi|148643205|ref|YP_001273718.1| - 0.03 13.0 0.0 0.046 12.4 0.0 1.2 1 0 0 1 1 1 0 Homoserine O-succinyltransferase Chorismate_bind PF00425.13 gi|148643206|ref|YP_001273719.1| - 1.9e-93 312.5 0.0 8.5e-93 310.3 0.0 1.8 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|148643206|ref|YP_001273719.1| - 5.8e-30 104.1 0.0 2.6e-29 102.0 0.0 2.0 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region Band_7 PF01145.20 gi|148643207|ref|YP_001273720.1| - 0.0077 16.1 0.1 0.0086 16.0 0.0 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Wzy_C PF04932.10 gi|148643207|ref|YP_001273720.1| - 0.013 15.2 0.1 0.016 15.0 0.0 1.1 1 0 0 1 1 1 0 O-Antigen ligase DUF1460 PF07313.7 gi|148643207|ref|YP_001273720.1| - 0.032 13.4 1.0 0.043 13.0 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1460) Pox_P21 PF05313.7 gi|148643207|ref|YP_001273720.1| - 0.047 12.9 1.1 0.057 12.6 0.7 1.2 1 0 0 1 1 1 0 Poxvirus P21 membrane protein EIF_2_alpha PF07541.7 gi|148643207|ref|YP_001273720.1| - 0.057 13.1 0.1 0.067 12.9 0.1 1.2 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 2 alpha subunit DUF2258 PF10015.4 gi|148643207|ref|YP_001273720.1| - 0.16 11.7 1.2 0.3 10.9 0.7 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2258) Cas_Cmr5 PF09701.5 gi|148643207|ref|YP_001273720.1| - 0.25 11.5 1.2 0.53 10.4 0.2 2.0 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_Cmr5) Holin_LLH PF09682.5 gi|148643207|ref|YP_001273720.1| - 0.26 11.4 1.7 0.26 11.4 0.4 1.5 1 1 0 1 1 1 0 Phage holin protein (Holin_LLH) DUF3784 PF12650.2 gi|148643207|ref|YP_001273720.1| - 4.2 7.3 6.8 0.97 9.4 1.7 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) Abi PF02517.11 gi|148643208|ref|YP_001273721.1| - 7.6e-16 58.0 15.1 7.6e-16 58.0 10.5 2.9 2 1 0 2 2 2 1 CAAX protease self-immunity DUF4013 PF13197.1 gi|148643209|ref|YP_001273722.1| - 1.5e-34 118.7 26.6 1.5e-34 118.7 18.4 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF677 PF05055.7 gi|148643209|ref|YP_001273722.1| - 2.6 6.6 6.9 3.7 6.1 4.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF677) HTH_3 PF01381.17 gi|148643210|ref|YP_001273723.1| - 1.4e-15 56.8 0.1 1.5e-15 56.8 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|148643210|ref|YP_001273723.1| - 3.6e-10 39.7 0.2 4e-10 39.5 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|148643210|ref|YP_001273723.1| - 4.3e-09 36.4 0.0 4.9e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|148643210|ref|YP_001273723.1| - 7.9e-06 25.4 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|148643210|ref|YP_001273723.1| - 1.7e-05 24.5 0.2 7.8e-05 22.4 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|148643210|ref|YP_001273723.1| - 0.0009 19.3 0.1 0.0011 19.1 0.1 1.3 1 1 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.7 gi|148643210|ref|YP_001273723.1| - 0.001 18.6 0.1 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|148643210|ref|YP_001273723.1| - 0.0014 18.3 0.0 0.0024 17.6 0.0 1.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_38 PF13936.1 gi|148643210|ref|YP_001273723.1| - 0.0023 17.4 0.0 0.0032 16.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|148643210|ref|YP_001273723.1| - 0.0046 16.3 0.0 0.0077 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_7 PF02796.10 gi|148643210|ref|YP_001273723.1| - 0.018 14.8 0.3 0.034 13.9 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|148643210|ref|YP_001273723.1| - 0.021 14.4 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|148643210|ref|YP_001273723.1| - 0.038 13.2 0.0 0.057 12.7 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 Lyase_1 PF00206.15 gi|148643211|ref|YP_001273724.1| - 2.3e-55 187.9 0.7 3.5e-55 187.3 0.5 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|148643211|ref|YP_001273724.1| - 3.5e-24 84.5 0.0 3.2e-23 81.5 0.0 2.6 3 0 0 3 3 3 1 Adenylosuccinate lyase C-terminus eIF3_subunit PF08597.5 gi|148643211|ref|YP_001273724.1| - 0.003 17.1 0.3 0.0047 16.5 0.2 1.3 1 0 0 1 1 1 1 Translation initiation factor eIF3 subunit HTH_17 PF12728.2 gi|148643211|ref|YP_001273724.1| - 0.0031 17.7 0.0 2.9 8.2 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain PFK PF00365.15 gi|148643211|ref|YP_001273724.1| - 0.018 14.0 0.1 0.052 12.4 0.0 1.6 1 1 0 1 1 1 0 Phosphofructokinase DUF2393 PF09624.5 gi|148643212|ref|YP_001273725.1| - 0.03 13.8 0.9 0.03 13.8 0.7 4.2 2 2 1 3 3 3 0 Protein of unknown function (DUF2393) E1-E2_ATPase PF00122.15 gi|148643213|ref|YP_001273726.1| - 2.2e-53 180.6 0.4 2.2e-53 180.6 0.2 2.7 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|148643213|ref|YP_001273726.1| - 2e-46 159.1 0.6 3.2e-46 158.4 0.4 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|148643213|ref|YP_001273726.1| - 5.5e-25 87.2 0.9 3.5e-12 46.2 0.0 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|148643213|ref|YP_001273726.1| - 5.1e-17 62.6 0.0 8.9e-17 61.8 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|148643213|ref|YP_001273726.1| - 4.2e-09 36.3 2.4 2.6e-06 27.1 0.7 2.9 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase DUF211 PF02680.9 gi|148643213|ref|YP_001273726.1| - 0.003 17.3 0.4 0.069 12.9 0.0 2.8 2 0 0 2 2 2 1 Uncharacterized ArCR, COG1888 B5 PF03484.10 gi|148643213|ref|YP_001273726.1| - 0.019 14.7 1.6 6.6 6.6 0.0 3.8 4 0 0 4 4 4 0 tRNA synthetase B5 domain Amidohydro_1 PF01979.15 gi|148643214|ref|YP_001273727.1| - 2.1e-39 136.1 3.6 2.5e-39 135.8 2.5 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|148643214|ref|YP_001273727.1| - 2.8e-14 52.6 0.2 1.1e-13 50.8 0.1 2.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|148643214|ref|YP_001273727.1| - 1.2e-12 48.4 0.0 8.3e-06 26.0 0.0 2.7 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|148643214|ref|YP_001273727.1| - 2.6e-08 33.5 0.5 0.012 14.8 0.0 3.5 2 1 1 3 3 3 2 Amidohydrolase family Y_phosphatase2 PF03162.8 gi|148643214|ref|YP_001273727.1| - 0.046 13.0 0.1 0.15 11.3 0.0 1.8 2 0 0 2 2 2 0 Tyrosine phosphatase family DUF126 PF01989.11 gi|148643215|ref|YP_001273728.1| - 9.9e-38 127.6 0.2 9.9e-38 127.6 0.1 1.5 2 0 0 2 2 2 1 Protein of unknown function DUF126 TruD PF01142.13 gi|148643216|ref|YP_001273729.1| - 7.3e-122 406.6 0.1 8.3e-122 406.4 0.1 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF4446 PF14584.1 gi|148643217|ref|YP_001273730.1| - 0.023 14.5 0.1 0.036 13.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) AIRS_C PF02769.17 gi|148643218|ref|YP_001273731.1| - 1.5e-17 63.9 0.4 2.9e-17 63.0 0.0 1.7 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|148643218|ref|YP_001273731.1| - 8.9e-11 41.8 0.8 8.9e-11 41.8 0.5 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain DUF3458 PF11940.3 gi|148643218|ref|YP_001273731.1| - 0.11 11.2 0.0 0.17 10.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3458) GATase PF00117.23 gi|148643219|ref|YP_001273732.1| - 4.3e-33 114.3 0.0 5e-33 114.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|148643219|ref|YP_001273732.1| - 2.1e-05 24.2 0.0 0.069 12.7 0.0 2.0 2 0 0 2 2 2 2 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|148643219|ref|YP_001273732.1| - 7.6e-05 22.3 0.0 0.00012 21.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|148643219|ref|YP_001273732.1| - 0.016 14.6 0.0 0.3 10.4 0.0 2.0 2 0 0 2 2 2 0 Peptidase C26 DJ-1_PfpI PF01965.19 gi|148643219|ref|YP_001273732.1| - 0.063 12.7 0.0 0.094 12.1 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family Oxidored_nitro PF00148.14 gi|148643220|ref|YP_001273733.1| - 3.6e-24 85.1 0.1 5.5e-24 84.5 0.1 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase TusA PF01206.12 gi|148643221|ref|YP_001273734.1| - 0.076 12.6 0.1 0.23 11.0 0.0 1.8 1 0 0 1 1 1 0 Sulfurtransferase TusA C_GCAxxG_C_C PF09719.5 gi|148643222|ref|YP_001273735.1| - 8.9e-20 70.6 3.3 1.2e-19 70.3 2.3 1.1 1 0 0 1 1 1 1 Putative redox-active protein (C_GCAxxG_C_C) Phage_C PF12025.3 gi|148643223|ref|YP_001273736.1| - 0.016 15.1 0.1 0.019 14.9 0.0 1.1 1 0 0 1 1 1 0 Phage protein C AIG2_2 PF13772.1 gi|148643223|ref|YP_001273736.1| - 0.1 12.7 0.1 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 AIG2-like family MMR_HSR1_C PF08438.5 gi|148643224|ref|YP_001273737.1| - 1.1e-37 128.5 0.2 2.3e-37 127.5 0.1 1.6 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|148643224|ref|YP_001273737.1| - 7.4e-19 67.8 0.0 4e-18 65.4 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|148643224|ref|YP_001273737.1| - 1.7e-11 43.7 0.1 3.5e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|148643224|ref|YP_001273737.1| - 5e-09 35.6 0.3 5.8e-08 32.1 0.0 2.4 3 0 0 3 3 3 1 Ferrous iron transport protein B NTPase_1 PF03266.10 gi|148643224|ref|YP_001273737.1| - 0.061 13.0 0.0 4 7.1 0.0 2.4 2 0 0 2 2 2 0 NTPase Metallophos PF00149.23 gi|148643225|ref|YP_001273738.1| - 6.4e-09 35.4 0.9 1.2e-08 34.5 0.6 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|148643225|ref|YP_001273738.1| - 4.5e-07 29.8 0.0 6.3e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Phosphodiest PF01663.17 gi|148643226|ref|YP_001273739.1| - 6e-05 22.5 0.3 0.0027 17.0 0.2 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF360 PF04020.8 gi|148643226|ref|YP_001273739.1| - 6.5e-05 23.2 21.3 0.00011 22.5 14.8 1.3 1 0 0 1 1 1 1 Membrane protein of unknown function TP_methylase PF00590.15 gi|148643227|ref|YP_001273740.1| - 6.4e-38 130.5 0.0 7.3e-38 130.3 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Mesd PF10185.4 gi|148643227|ref|YP_001273740.1| - 0.0072 16.0 0.0 0.093 12.4 0.0 2.1 2 0 0 2 2 2 1 Chaperone for wingless signalling and trafficking of LDL receptor PAZ_siRNAbind PF12212.3 gi|148643227|ref|YP_001273740.1| - 0.9 9.2 3.6 11 5.7 0.0 3.5 4 0 0 4 4 4 0 Piwi/Argonaute/Zwille siRNA-binding domain DUF4399 PF14347.1 gi|148643228|ref|YP_001273741.1| - 4.9e-21 74.5 11.6 2.3e-06 27.5 0.1 4.5 2 2 2 4 4 4 4 Domain of unknown function (DUF4399) DUF819 PF05684.7 gi|148643228|ref|YP_001273741.1| - 0.094 11.5 0.1 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF819) Glyco_hydro_108 PF05838.7 gi|148643228|ref|YP_001273741.1| - 0.13 12.3 1.1 0.57 10.3 0.0 2.5 2 0 0 2 2 2 0 Glycosyl hydrolase 108 7TMR-DISM_7TM PF07695.6 gi|148643229|ref|YP_001273742.1| - 0.013 15.1 2.5 0.014 15.1 1.8 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF3671 PF12420.3 gi|148643229|ref|YP_001273742.1| - 0.028 14.3 4.9 0.033 14.1 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function Tetraspannin PF00335.15 gi|148643229|ref|YP_001273742.1| - 0.085 12.1 1.7 0.11 11.7 1.2 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF2207 PF09972.4 gi|148643229|ref|YP_001273742.1| - 0.31 9.5 2.3 0.36 9.3 1.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4282 PF14110.1 gi|148643229|ref|YP_001273742.1| - 0.82 9.9 7.8 1.5 9.0 5.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) Tenui_PVC2 PF06656.6 gi|148643229|ref|YP_001273742.1| - 1.3 6.7 5.2 1.2 6.7 3.6 1.0 1 0 0 1 1 1 0 Tenuivirus PVC2 protein ODV-E18 PF10717.4 gi|148643229|ref|YP_001273742.1| - 3.7 7.0 5.6 1.3 8.5 0.1 2.0 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 ArsA_ATPase PF02374.10 gi|148643230|ref|YP_001273743.1| - 2.9e-106 354.9 0.4 3.3e-106 354.7 0.3 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|148643230|ref|YP_001273743.1| - 6.1e-14 51.8 0.1 2.1e-13 50.1 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|148643230|ref|YP_001273743.1| - 4.7e-07 29.8 0.1 7.5e-06 25.9 0.1 2.6 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|148643230|ref|YP_001273743.1| - 0.00022 20.7 2.6 0.014 14.7 0.3 2.6 2 1 0 3 3 3 2 SRP54-type protein, GTPase domain Fer4_NifH PF00142.13 gi|148643230|ref|YP_001273743.1| - 0.00028 20.1 0.0 0.0006 19.0 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|148643230|ref|YP_001273743.1| - 0.00047 19.6 0.1 0.0011 18.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|148643230|ref|YP_001273743.1| - 0.00095 18.4 0.0 0.0018 17.5 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein YhjQ PF06564.7 gi|148643230|ref|YP_001273743.1| - 0.0057 16.0 0.1 0.022 14.1 0.0 2.1 1 1 0 1 1 1 1 YhjQ protein AAA_10 PF12846.2 gi|148643230|ref|YP_001273743.1| - 0.0095 15.4 0.2 0.023 14.1 0.1 1.7 1 1 0 1 1 1 1 AAA-like domain ParA PF10609.4 gi|148643230|ref|YP_001273743.1| - 0.049 13.5 0.1 0.36 10.7 0.0 2.3 2 0 0 2 2 2 0 ParA/MinD ATPase like Zeta_toxin PF06414.7 gi|148643230|ref|YP_001273743.1| - 0.077 12.0 0.1 0.26 10.3 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin NB-ARC PF00931.17 gi|148643230|ref|YP_001273743.1| - 0.08 11.7 0.1 0.15 10.8 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain PIF1 PF05970.9 gi|148643230|ref|YP_001273743.1| - 0.11 11.4 0.7 0.69 8.8 0.0 2.0 2 0 0 2 2 2 0 PIF1-like helicase AAA_24 PF13479.1 gi|148643230|ref|YP_001273743.1| - 0.16 11.4 1.0 0.46 10.0 0.7 1.8 1 1 0 1 1 1 0 AAA domain NAD_synthase PF02540.12 gi|148643231|ref|YP_001273744.1| - 9.8e-88 293.1 1.0 1.1e-87 292.9 0.7 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|148643231|ref|YP_001273744.1| - 0.00023 19.8 0.0 0.0014 17.2 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase Sigma70_r3 PF04539.11 gi|148643231|ref|YP_001273744.1| - 0.013 15.3 0.0 0.069 13.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-70 region 3 Asn_synthase PF00733.16 gi|148643231|ref|YP_001273744.1| - 0.018 14.5 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.8 gi|148643231|ref|YP_001273744.1| - 0.035 13.3 0.9 0.31 10.2 0.1 2.7 3 1 0 3 3 3 0 Queuosine biosynthesis protein QueC HTH_10 PF04967.7 gi|148643231|ref|YP_001273744.1| - 0.05 13.1 0.2 5.4 6.6 0.0 3.2 3 0 0 3 3 3 0 HTH DNA binding domain FtsZ_C PF12327.3 gi|148643231|ref|YP_001273744.1| - 0.17 12.0 0.6 7.2 6.7 0.0 2.5 2 0 0 2 2 2 0 FtsZ family, C-terminal domain Imm45 PF15603.1 gi|148643231|ref|YP_001273744.1| - 0.18 11.9 1.9 0.6 10.2 0.4 2.4 2 1 0 2 2 2 0 Immunity protein 45 tRNA-synt_1 PF00133.17 gi|148643232|ref|YP_001273745.1| - 1.4e-61 208.2 6.9 9.9e-44 149.3 0.1 3.3 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|148643232|ref|YP_001273745.1| - 3.5e-29 101.5 0.3 7.5e-29 100.4 0.2 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|148643232|ref|YP_001273745.1| - 1.2e-25 89.9 7.1 2.9e-10 39.3 2.1 4.0 2 2 1 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|148643232|ref|YP_001273745.1| - 4.4e-09 35.8 0.2 0.00022 20.4 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|148643232|ref|YP_001273745.1| - 4.8e-08 32.5 0.0 1.2e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|148643232|ref|YP_001273745.1| - 1.8e-05 23.6 0.0 0.00022 20.0 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|148643232|ref|YP_001273745.1| - 0.00013 20.8 0.0 0.0098 14.7 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1b PF00579.20 gi|148643232|ref|YP_001273745.1| - 0.055 12.5 0.0 0.2 10.7 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) GCD14 PF08704.5 gi|148643233|ref|YP_001273746.1| - 4.4e-29 101.6 0.0 1.1e-25 90.6 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|148643233|ref|YP_001273746.1| - 2.2e-12 46.8 0.0 3.2e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148643233|ref|YP_001273746.1| - 2e-09 38.0 0.0 3.5e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|148643233|ref|YP_001273746.1| - 6.4e-08 32.3 0.0 7.2e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|148643233|ref|YP_001273746.1| - 4e-06 26.2 0.0 5.6e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|148643233|ref|YP_001273746.1| - 2.9e-05 23.3 0.2 4.2e-05 22.7 0.1 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|148643233|ref|YP_001273746.1| - 0.00021 20.3 0.0 0.00032 19.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.10 gi|148643233|ref|YP_001273746.1| - 0.00089 18.7 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.8 gi|148643233|ref|YP_001273746.1| - 0.00095 18.3 0.0 0.0013 17.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|148643233|ref|YP_001273746.1| - 0.0011 19.0 0.0 0.0018 18.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|148643233|ref|YP_001273746.1| - 0.0026 17.3 0.1 0.0049 16.4 0.1 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.7 gi|148643233|ref|YP_001273746.1| - 0.043 14.3 0.0 0.093 13.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Peptidase_M48 PF01435.13 gi|148643234|ref|YP_001273747.1| - 6.1e-68 228.7 0.0 8.2e-68 228.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 EF-hand_5 PF13202.1 gi|148643234|ref|YP_001273747.1| - 6.2e-09 34.8 2.4 5.4e-08 31.8 1.0 2.3 2 0 0 2 2 2 1 EF hand Peptidase_M56 PF05569.6 gi|148643234|ref|YP_001273747.1| - 2.7e-08 33.1 0.0 5.8e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 EF-hand_6 PF13405.1 gi|148643234|ref|YP_001273747.1| - 1.8e-05 24.2 0.6 0.001 18.7 0.2 2.5 2 0 0 2 2 2 1 EF-hand domain EF-hand_1 PF00036.27 gi|148643234|ref|YP_001273747.1| - 1.9e-05 23.6 0.2 0.00026 20.0 0.2 2.4 2 0 0 2 2 2 1 EF hand EF-hand_7 PF13499.1 gi|148643234|ref|YP_001273747.1| - 0.00022 21.2 0.2 0.0022 18.0 0.1 2.2 2 0 0 2 2 2 1 EF-hand domain pair EF-hand_8 PF13833.1 gi|148643234|ref|YP_001273747.1| - 0.0033 17.0 0.2 0.011 15.2 0.0 2.0 2 0 0 2 2 2 1 EF-hand domain pair DUF4013 PF13197.1 gi|148643234|ref|YP_001273747.1| - 0.0069 15.7 0.7 0.0069 15.7 0.5 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF4013) ATG22 PF11700.3 gi|148643234|ref|YP_001273747.1| - 0.025 13.0 0.3 0.036 12.5 0.2 1.2 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like SprT-like PF10263.4 gi|148643234|ref|YP_001273747.1| - 0.1 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 SprT-like family RDD PF06271.7 gi|148643234|ref|YP_001273747.1| - 1.2 9.0 12.0 0.21 11.4 1.0 2.3 2 1 0 2 2 2 0 RDD family ABC2_membrane_4 PF12730.2 gi|148643234|ref|YP_001273747.1| - 1.9 7.6 15.7 2.7 7.0 2.1 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF4491 PF14898.1 gi|148643234|ref|YP_001273747.1| - 4.5 7.4 7.0 13 6.0 1.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4491) DUF204 PF02659.10 gi|148643234|ref|YP_001273747.1| - 8.9 6.5 10.6 4.9 7.3 1.4 2.6 2 1 0 2 2 2 0 Domain of unknown function DUF DUF1510 PF07423.6 gi|148643235|ref|YP_001273748.1| - 0.00024 20.5 0.0 0.00027 20.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) Integrin_b_cyt PF08725.6 gi|148643235|ref|YP_001273748.1| - 0.0009 18.5 0.1 0.0016 17.7 0.1 1.4 1 0 0 1 1 1 1 Integrin beta cytoplasmic domain SpoIIIAH PF12685.2 gi|148643235|ref|YP_001273748.1| - 0.0027 17.2 0.1 0.0031 17.0 0.0 1.1 1 0 0 1 1 1 1 SpoIIIAH-like protein DUF3139 PF11337.3 gi|148643235|ref|YP_001273748.1| - 0.0064 16.7 0.3 0.0088 16.3 0.2 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3139) Sigma_reg_N PF13800.1 gi|148643235|ref|YP_001273748.1| - 0.011 15.7 0.1 0.015 15.2 0.1 1.2 1 0 0 1 1 1 0 Sigma factor regulator N-terminal DUF4367 PF14285.1 gi|148643235|ref|YP_001273748.1| - 0.012 14.9 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4367) ABC2_membrane_3 PF12698.2 gi|148643235|ref|YP_001273748.1| - 0.036 13.1 0.1 0.036 13.1 0.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Shisa PF13908.1 gi|148643235|ref|YP_001273748.1| - 0.097 12.8 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Tetraspannin PF00335.15 gi|148643235|ref|YP_001273748.1| - 0.13 11.5 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF1628 PF07790.6 gi|148643235|ref|YP_001273748.1| - 0.31 11.8 2.1 0.44 11.3 1.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) Rep_fac_C PF08542.6 gi|148643236|ref|YP_001273749.1| - 1.7e-17 63.1 0.0 3.5e-17 62.1 0.0 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|148643236|ref|YP_001273749.1| - 5.5e-17 61.9 0.0 1.4e-14 54.0 0.0 2.5 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|148643236|ref|YP_001273749.1| - 6.6e-16 58.7 0.1 2e-15 57.1 0.0 1.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|148643236|ref|YP_001273749.1| - 3.7e-11 42.4 0.0 1.4e-06 27.3 0.0 2.3 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|148643236|ref|YP_001273749.1| - 2.9e-07 30.4 0.0 5.2e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|148643236|ref|YP_001273749.1| - 2.2e-06 26.9 0.7 1.3e-05 24.3 0.2 2.2 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|148643236|ref|YP_001273749.1| - 3.5e-06 26.3 0.0 0.0015 17.7 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|148643236|ref|YP_001273749.1| - 2.7e-05 23.6 0.0 6.8e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|148643236|ref|YP_001273749.1| - 5.3e-05 23.3 0.5 0.27 11.3 0.1 2.8 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|148643236|ref|YP_001273749.1| - 0.00013 21.9 0.0 0.0025 17.8 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|148643236|ref|YP_001273749.1| - 0.00053 20.7 0.2 0.0016 19.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|148643236|ref|YP_001273749.1| - 0.00061 19.2 0.1 0.92 8.9 0.0 2.7 3 0 0 3 3 3 2 Sigma-54 interaction domain AAA_18 PF13238.1 gi|148643236|ref|YP_001273749.1| - 0.00075 19.8 0.0 0.0042 17.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|148643236|ref|YP_001273749.1| - 0.0018 17.9 0.0 0.0049 16.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain ResIII PF04851.10 gi|148643236|ref|YP_001273749.1| - 0.0018 18.1 0.0 0.0035 17.1 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_5 PF07728.9 gi|148643236|ref|YP_001273749.1| - 0.0025 17.5 0.2 0.029 14.0 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|148643236|ref|YP_001273749.1| - 0.006 16.5 0.0 0.029 14.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_3 PF07726.6 gi|148643236|ref|YP_001273749.1| - 0.0078 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|148643236|ref|YP_001273749.1| - 0.012 14.5 0.0 0.019 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MobB PF03205.9 gi|148643236|ref|YP_001273749.1| - 0.017 14.8 0.0 0.047 13.3 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|148643236|ref|YP_001273749.1| - 0.018 15.2 0.0 0.051 13.7 0.0 1.8 1 0 0 1 1 1 0 RNA helicase DNA_pol3_delta PF06144.8 gi|148643236|ref|YP_001273749.1| - 0.019 14.5 0.0 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase III, delta subunit AAA_11 PF13086.1 gi|148643236|ref|YP_001273749.1| - 0.028 14.0 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|148643236|ref|YP_001273749.1| - 0.033 13.4 0.3 0.47 9.6 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_29 PF13555.1 gi|148643236|ref|YP_001273749.1| - 0.033 13.7 0.0 0.065 12.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SE PF00437.15 gi|148643236|ref|YP_001273749.1| - 0.034 13.0 0.0 0.067 12.0 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.1 gi|148643236|ref|YP_001273749.1| - 0.038 13.3 0.3 0.083 12.2 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|148643236|ref|YP_001273749.1| - 0.045 13.1 0.5 0.18 11.2 0.4 2.4 1 1 0 1 1 1 0 AAA-like domain DBI_PRT PF02277.12 gi|148643236|ref|YP_001273749.1| - 0.053 12.6 0.0 0.091 11.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyltransferase AAA_24 PF13479.1 gi|148643236|ref|YP_001273749.1| - 0.053 13.1 0.1 0.14 11.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|148643236|ref|YP_001273749.1| - 0.055 12.6 0.0 0.18 10.9 0.0 1.9 3 0 0 3 3 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|148643236|ref|YP_001273749.1| - 0.069 12.5 0.2 0.29 10.5 0.0 2.0 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_26 PF13500.1 gi|148643236|ref|YP_001273749.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|148643237|ref|YP_001273750.1| - 2.3e-12 47.2 1.0 8.4e-11 42.1 0.0 2.8 1 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|148643237|ref|YP_001273750.1| - 1.8e-11 43.4 1.5 1.7e-06 27.0 0.0 2.3 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|148643237|ref|YP_001273750.1| - 4.5e-09 35.7 0.0 2e-08 33.5 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|148643237|ref|YP_001273750.1| - 1.9e-07 31.2 0.0 1.4e-06 28.4 0.0 2.4 2 1 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|148643237|ref|YP_001273750.1| - 1.8e-06 27.8 0.0 5.6e-06 26.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|148643237|ref|YP_001273750.1| - 2.5e-05 24.3 0.3 0.00024 21.1 0.0 2.6 3 0 0 3 3 3 1 AAA ATPase domain AAA_17 PF13207.1 gi|148643237|ref|YP_001273750.1| - 4.1e-05 24.3 2.4 0.00023 21.9 0.0 3.0 1 1 0 3 3 3 1 AAA domain DNA_pol3_delta PF06144.8 gi|148643237|ref|YP_001273750.1| - 8.2e-05 22.1 0.1 0.00023 20.7 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase III, delta subunit NACHT PF05729.7 gi|148643237|ref|YP_001273750.1| - 0.00017 21.2 0.0 0.0028 17.3 0.0 2.7 3 0 0 3 3 3 1 NACHT domain DUF815 PF05673.8 gi|148643237|ref|YP_001273750.1| - 0.00026 20.0 0.0 0.00066 18.6 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_5 PF07728.9 gi|148643237|ref|YP_001273750.1| - 0.00026 20.7 0.0 0.0011 18.7 0.0 2.2 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|148643237|ref|YP_001273750.1| - 0.00038 19.9 0.1 0.0014 18.0 0.1 2.0 1 1 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|148643237|ref|YP_001273750.1| - 0.0005 20.2 0.3 0.004 17.2 0.0 2.7 3 1 0 3 3 2 1 RNA helicase AAA_33 PF13671.1 gi|148643237|ref|YP_001273750.1| - 0.00054 19.8 0.1 0.0028 17.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|148643237|ref|YP_001273750.1| - 0.00056 18.7 4.2 0.00075 18.3 0.0 2.8 3 0 0 3 3 3 1 TIP49 C-terminus AAA_19 PF13245.1 gi|148643237|ref|YP_001273750.1| - 0.00074 19.2 0.0 0.0026 17.4 0.0 1.9 2 0 0 2 2 1 1 Part of AAA domain AAA_25 PF13481.1 gi|148643237|ref|YP_001273750.1| - 0.0015 17.9 0.1 0.0079 15.6 0.0 2.2 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.7 gi|148643237|ref|YP_001273750.1| - 0.0017 17.5 0.3 0.0053 15.8 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin AAA_18 PF13238.1 gi|148643237|ref|YP_001273750.1| - 0.0019 18.4 0.0 0.0019 18.4 0.0 4.2 3 1 0 3 3 2 1 AAA domain Mg_chelatase PF01078.16 gi|148643237|ref|YP_001273750.1| - 0.002 17.3 0.0 0.0057 15.8 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|148643237|ref|YP_001273750.1| - 0.0024 17.6 0.0 0.0024 17.6 0.0 3.2 2 2 0 2 2 1 1 Archaeal ATPase Parvo_NS1 PF01057.12 gi|148643237|ref|YP_001273750.1| - 0.0045 15.9 0.0 0.0091 14.8 0.0 1.5 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_24 PF13479.1 gi|148643237|ref|YP_001273750.1| - 0.0053 16.3 0.0 0.019 14.5 0.0 2.0 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|148643237|ref|YP_001273750.1| - 0.011 14.5 0.0 0.011 14.5 0.0 2.7 4 0 0 4 4 4 0 NB-ARC domain NTPase_1 PF03266.10 gi|148643237|ref|YP_001273750.1| - 0.012 15.3 0.8 0.083 12.5 0.0 2.8 3 0 0 3 3 3 0 NTPase ABC_tran PF00005.22 gi|148643237|ref|YP_001273750.1| - 0.014 15.6 0.0 0.014 15.6 0.0 3.4 3 3 0 3 3 2 0 ABC transporter Bac_DnaA PF00308.13 gi|148643237|ref|YP_001273750.1| - 0.015 14.9 2.9 0.024 14.2 0.1 2.7 2 1 0 2 2 2 0 Bacterial dnaA protein AAA_28 PF13521.1 gi|148643237|ref|YP_001273750.1| - 0.017 15.0 0.0 0.073 13.0 0.0 2.0 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|148643237|ref|YP_001273750.1| - 0.02 14.9 0.0 0.064 13.3 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.13 gi|148643237|ref|YP_001273750.1| - 0.023 14.2 0.0 0.061 12.8 0.0 1.7 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_10 PF12846.2 gi|148643237|ref|YP_001273750.1| - 0.025 14.0 0.9 0.67 9.3 0.0 2.8 2 2 0 3 3 3 0 AAA-like domain PduV-EutP PF10662.4 gi|148643237|ref|YP_001273750.1| - 0.026 14.0 0.0 0.077 12.4 0.0 1.9 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DEAD PF00270.24 gi|148643237|ref|YP_001273750.1| - 0.029 13.8 0.5 1.7 8.1 0.0 3.1 2 1 1 3 3 3 0 DEAD/DEAH box helicase AAA_29 PF13555.1 gi|148643237|ref|YP_001273750.1| - 0.046 13.2 0.0 0.48 10.0 0.0 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain ResIII PF04851.10 gi|148643237|ref|YP_001273750.1| - 0.053 13.3 6.1 0.14 11.9 0.0 3.5 2 2 1 3 3 3 0 Type III restriction enzyme, res subunit CMV_1a PF12467.3 gi|148643237|ref|YP_001273750.1| - 0.84 9.9 10.3 2.2 8.6 7.1 1.6 1 0 0 1 1 1 0 Cucumber mosaic virus 1a protein family Shikimate_dh_N PF08501.6 gi|148643239|ref|YP_001273752.1| - 8.5e-32 109.0 0.0 1.5e-31 108.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|148643239|ref|YP_001273752.1| - 3.6e-14 53.0 0.1 6.2e-14 52.2 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Ldh_1_N PF00056.18 gi|148643239|ref|YP_001273752.1| - 0.014 15.2 0.1 0.035 13.9 0.0 1.7 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|148643239|ref|YP_001273752.1| - 0.023 14.4 0.0 0.045 13.4 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiF PF00899.16 gi|148643239|ref|YP_001273752.1| - 0.042 13.6 0.1 0.49 10.2 0.0 2.3 1 1 1 2 2 2 0 ThiF family Abi PF02517.11 gi|148643240|ref|YP_001273753.1| - 2.8e-20 72.2 5.0 2.8e-20 72.2 3.5 3.3 3 1 0 3 3 3 1 CAAX protease self-immunity tRNA-synt_His PF13393.1 gi|148643241|ref|YP_001273754.1| - 1.8e-64 217.7 0.0 2.3e-64 217.4 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|148643241|ref|YP_001273754.1| - 2.4e-26 92.3 0.0 5.7e-26 91.1 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|148643241|ref|YP_001273754.1| - 5.9e-16 58.2 0.7 1.3e-15 57.1 0.5 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|148643241|ref|YP_001273754.1| - 0.00014 21.1 0.0 0.00026 20.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|148643241|ref|YP_001273754.1| - 0.00017 20.4 0.5 0.025 13.3 0.1 2.7 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) HGTP_anticodon2 PF12745.2 gi|148643241|ref|YP_001273754.1| - 0.0058 15.7 0.3 0.01 14.9 0.2 1.3 1 0 0 1 1 1 1 Anticodon binding domain of tRNAs YusW PF14039.1 gi|148643241|ref|YP_001273754.1| - 0.048 13.9 0.5 3.8 7.8 0.0 3.1 3 0 0 3 3 3 0 YusW-like protein PRA-CH PF01502.13 gi|148643242|ref|YP_001273755.1| - 8.4e-35 118.2 0.9 1.2e-34 117.8 0.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase SAM_2 PF07647.12 gi|148643242|ref|YP_001273755.1| - 0.017 14.9 0.7 0.73 9.7 0.0 2.9 3 0 0 3 3 3 0 SAM domain (Sterile alpha motif) T2SE PF00437.15 gi|148643243|ref|YP_001273756.1| - 1.4e-13 50.3 0.0 2.6e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|148643243|ref|YP_001273756.1| - 7.9e-06 25.4 2.1 7.9e-06 25.4 1.5 2.3 3 0 0 3 3 2 1 KH domain AAA_17 PF13207.1 gi|148643243|ref|YP_001273756.1| - 1.8e-05 25.5 0.0 7.8e-05 23.4 0.0 2.2 1 0 0 1 1 1 1 AAA domain PIN PF01850.16 gi|148643243|ref|YP_001273756.1| - 0.00052 20.3 0.0 0.0014 18.9 0.0 1.8 1 0 0 1 1 1 1 PIN domain AAA_16 PF13191.1 gi|148643243|ref|YP_001273756.1| - 0.00069 19.6 0.0 0.0017 18.3 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain KH_2 PF07650.12 gi|148643243|ref|YP_001273756.1| - 0.0011 18.4 3.6 0.0033 16.9 2.5 1.8 1 0 0 1 1 1 1 KH domain AAA_18 PF13238.1 gi|148643243|ref|YP_001273756.1| - 0.0014 18.9 0.0 0.0051 17.1 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|148643243|ref|YP_001273756.1| - 0.0018 17.7 0.0 0.0047 16.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|148643243|ref|YP_001273756.1| - 0.002 18.4 0.0 0.019 15.2 0.0 2.5 3 0 0 3 3 3 1 ABC transporter FtsK_SpoIIIE PF01580.13 gi|148643243|ref|YP_001273756.1| - 0.0028 17.1 0.0 0.0058 16.1 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family ArgK PF03308.11 gi|148643243|ref|YP_001273756.1| - 0.0035 16.1 0.0 0.0066 15.2 0.0 1.4 1 0 0 1 1 1 1 ArgK protein AAA_30 PF13604.1 gi|148643243|ref|YP_001273756.1| - 0.0047 16.5 0.0 0.0091 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|148643243|ref|YP_001273756.1| - 0.0053 15.7 0.0 0.0091 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|148643243|ref|YP_001273756.1| - 0.0073 16.4 0.0 0.042 14.0 0.0 2.3 2 0 0 2 2 2 1 RNA helicase KH_3 PF13014.1 gi|148643243|ref|YP_001273756.1| - 0.0085 15.7 1.3 0.025 14.2 0.9 1.8 1 0 0 1 1 1 1 KH domain Miro PF08477.8 gi|148643243|ref|YP_001273756.1| - 0.01 16.3 0.2 0.057 13.9 0.0 2.4 3 0 0 3 3 1 0 Miro-like protein AAA_28 PF13521.1 gi|148643243|ref|YP_001273756.1| - 0.016 15.1 0.0 0.038 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|148643243|ref|YP_001273756.1| - 0.018 15.1 0.0 0.053 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|148643243|ref|YP_001273756.1| - 0.02 13.5 0.0 0.031 12.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|148643243|ref|YP_001273756.1| - 0.02 14.6 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_33 PF13671.1 gi|148643243|ref|YP_001273756.1| - 0.021 14.7 0.0 0.045 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|148643243|ref|YP_001273756.1| - 0.023 13.8 0.0 0.049 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NTPase_1 PF03266.10 gi|148643243|ref|YP_001273756.1| - 0.024 14.3 0.1 0.27 10.9 0.0 2.5 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.1 gi|148643243|ref|YP_001273756.1| - 0.026 13.9 0.0 0.052 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|148643243|ref|YP_001273756.1| - 0.029 14.2 0.0 0.096 12.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|148643243|ref|YP_001273756.1| - 0.031 13.6 0.0 0.094 12.0 0.0 1.8 1 1 1 2 2 2 0 Thymidylate kinase Sigma54_activ_2 PF14532.1 gi|148643243|ref|YP_001273756.1| - 0.036 14.1 0.0 0.087 12.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.13 gi|148643243|ref|YP_001273756.1| - 0.037 13.5 0.0 0.088 12.3 0.0 1.6 2 0 0 2 2 1 0 Viral (Superfamily 1) RNA helicase UPF0079 PF02367.12 gi|148643243|ref|YP_001273756.1| - 0.04 13.5 0.0 0.081 12.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|148643243|ref|YP_001273756.1| - 0.042 12.9 0.0 0.094 11.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin KTI12 PF08433.5 gi|148643243|ref|YP_001273756.1| - 0.061 12.5 0.1 0.2 10.8 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 IstB_IS21 PF01695.12 gi|148643243|ref|YP_001273756.1| - 0.096 12.0 0.0 0.28 10.5 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_31 PF13614.1 gi|148643243|ref|YP_001273756.1| - 0.098 12.5 0.0 0.47 10.3 0.0 2.2 2 0 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|148643243|ref|YP_001273756.1| - 0.14 11.7 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AP_endonuc_2 PF01261.19 gi|148643244|ref|YP_001273757.1| - 7.2e-26 90.8 0.0 9.5e-26 90.4 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_97 PF10566.4 gi|148643244|ref|YP_001273757.1| - 0.025 13.6 0.0 0.036 13.1 0.0 1.2 1 0 0 1 1 1 0 Glycoside hydrolase 97 DNA_binding_1 PF01035.15 gi|148643245|ref|YP_001273758.1| - 9.1e-30 102.2 0.0 1.2e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Methyltransf_1N PF02870.10 gi|148643245|ref|YP_001273758.1| - 0.00013 22.4 0.0 0.0002 21.9 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain rpo132 PF12415.3 gi|148643245|ref|YP_001273758.1| - 0.073 12.0 0.0 0.14 11.1 0.0 1.4 1 0 0 1 1 1 0 Poxvirus DNA dependent RNA polymerase Na_H_Exchanger PF00999.16 gi|148643246|ref|YP_001273759.1| - 1.3e-39 135.8 45.9 1.6e-39 135.5 31.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF912 PF06024.7 gi|148643246|ref|YP_001273759.1| - 0.12 12.4 0.2 0.12 12.4 0.1 2.4 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) ERCC4 PF02732.10 gi|148643247|ref|YP_001273760.1| - 9e-27 93.5 0.0 2.4e-26 92.1 0.0 1.8 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.26 gi|148643247|ref|YP_001273760.1| - 3.4e-23 81.3 0.0 1.2e-22 79.4 0.0 2.1 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|148643247|ref|YP_001273760.1| - 3.1e-21 75.5 0.1 9.2e-21 74.0 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|148643247|ref|YP_001273760.1| - 3.6e-15 56.2 0.0 1.1e-14 54.7 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|148643247|ref|YP_001273760.1| - 1.4e-11 44.1 0.0 4.3e-11 42.5 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|148643247|ref|YP_001273760.1| - 1.5e-10 41.0 0.0 7.7e-10 38.8 0.0 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|148643247|ref|YP_001273760.1| - 2.2e-06 27.0 0.0 9e-06 25.1 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|148643247|ref|YP_001273760.1| - 0.00016 21.8 0.6 0.019 15.1 0.1 3.7 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.2 gi|148643247|ref|YP_001273760.1| - 0.00051 19.9 2.5 0.021 14.7 0.1 2.3 1 1 1 2 2 2 2 Helix-hairpin-helix motif DUF4399 PF14347.1 gi|148643248|ref|YP_001273761.1| - 8.8e-26 89.7 8.5 9.1e-06 25.6 0.0 9.2 10 0 0 10 10 10 5 Domain of unknown function (DUF4399) Big_1 PF02369.11 gi|148643248|ref|YP_001273761.1| - 0.00076 19.3 4.7 0.0035 17.2 0.4 18.5 16 5 4 20 20 20 8 Bacterial Ig-like domain (group 1) PEGA PF08308.6 gi|148643248|ref|YP_001273761.1| - 0.0073 16.0 31.2 0.22 11.3 0.5 8.2 8 0 0 8 8 8 4 PEGA domain DUF4074 PF13293.1 gi|148643248|ref|YP_001273761.1| - 0.1 12.8 0.0 2.2e+02 2.1 0.0 5.0 5 0 0 5 5 5 0 Domain of unknown function (DUF4074) DUF964 PF06133.6 gi|148643248|ref|YP_001273761.1| - 0.25 11.3 0.0 4.3e+02 0.9 0.0 4.2 5 0 0 5 5 5 0 Protein of unknown function (DUF964) DUF740 PF05340.7 gi|148643248|ref|YP_001273761.1| - 5 5.3 7.2 34 2.5 0.0 4.2 5 0 0 5 5 5 0 Protein of unknown function (DUF740) DDE_Tnp_IS66 PF03050.9 gi|148643249|ref|YP_001273762.1| - 4.5e-08 32.6 3.0 2.4e-07 30.2 2.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family Zn_Tnp_IS1595 PF12760.2 gi|148643249|ref|YP_001273762.1| - 0.00061 19.5 2.0 0.0015 18.2 1.4 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148643249|ref|YP_001273762.1| - 0.03 13.6 1.7 0.28 10.5 1.1 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|148643249|ref|YP_001273762.1| - 0.063 13.2 3.8 3.5 7.6 1.0 2.8 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|148643249|ref|YP_001273762.1| - 0.098 12.9 0.2 0.31 11.3 0.1 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|148643249|ref|YP_001273762.1| - 0.33 10.6 4.6 6 6.5 3.2 2.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|148643249|ref|YP_001273762.1| - 0.68 10.0 9.3 0.53 10.3 0.4 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TetR_C_8 PF14278.1 gi|148643249|ref|YP_001273762.1| - 1.3 9.4 6.9 0.75 10.2 0.5 3.6 2 1 0 3 3 3 0 Transcriptional regulator C-terminal region Transposase_mut PF00872.13 gi|148643249|ref|YP_001273762.1| - 4.1 5.8 7.2 25 3.2 2.6 2.9 2 1 1 3 3 3 0 Transposase, Mutator family Mur_ligase_M PF08245.7 gi|148643250|ref|YP_001273763.1| - 7.6e-25 88.0 0.1 6.6e-24 84.9 0.1 2.2 1 1 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|148643250|ref|YP_001273763.1| - 2.6e-05 24.1 0.0 7.3e-05 22.7 0.0 1.8 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain DUF1922 PF09082.5 gi|148643250|ref|YP_001273763.1| - 0.0094 15.9 2.1 0.021 14.8 0.2 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1922) CofC PF01983.11 gi|148643250|ref|YP_001273763.1| - 0.065 12.1 1.1 2.5 7.0 0.0 2.9 2 1 0 2 2 2 0 Guanylyl transferase CofC like Ecm33 PF12454.3 gi|148643250|ref|YP_001273763.1| - 0.12 12.2 0.0 0.36 10.7 0.0 1.8 1 0 0 1 1 1 0 GPI-anchored cell wall organization protein Mur_ligase_M PF08245.7 gi|148643251|ref|YP_001273764.1| - 6.1e-17 62.2 0.1 1.1e-16 61.4 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Pyr_redox PF00070.22 gi|148643251|ref|YP_001273764.1| - 0.0011 19.3 0.0 0.0072 16.7 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|148643251|ref|YP_001273764.1| - 0.0014 18.2 0.0 0.037 13.6 0.0 2.9 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Mannitol_dh PF01232.18 gi|148643251|ref|YP_001273764.1| - 0.0015 18.4 0.1 0.066 13.1 0.0 2.5 2 0 0 2 2 2 1 Mannitol dehydrogenase Rossmann domain TrkA_N PF02254.13 gi|148643251|ref|YP_001273764.1| - 0.0037 17.2 0.0 0.0081 16.1 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain Semialdhyde_dh PF01118.19 gi|148643251|ref|YP_001273764.1| - 0.004 17.4 0.2 0.56 10.5 0.0 2.8 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|148643251|ref|YP_001273764.1| - 0.0052 17.1 0.0 0.022 15.1 0.0 2.2 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|148643251|ref|YP_001273764.1| - 0.012 15.4 0.2 0.48 10.2 0.0 3.4 3 1 1 4 4 4 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|148643251|ref|YP_001273764.1| - 0.013 15.6 0.4 0.24 11.4 0.2 2.8 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|148643251|ref|YP_001273764.1| - 0.014 15.1 0.0 0.035 13.8 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|148643251|ref|YP_001273764.1| - 0.015 15.3 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|148643251|ref|YP_001273764.1| - 0.016 14.3 0.0 0.042 13.0 0.0 1.7 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CbiA PF01656.18 gi|148643251|ref|YP_001273764.1| - 0.024 14.0 0.0 4.1 6.7 0.0 2.4 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Mur_ligase_C PF02875.16 gi|148643251|ref|YP_001273764.1| - 0.13 12.2 0.1 0.86 9.6 0.0 2.3 2 0 0 2 2 2 0 Mur ligase family, glutamate ligase domain DEDD_Tnp_IS110 PF01548.12 gi|148643251|ref|YP_001273764.1| - 0.16 11.6 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 Transposase DUF521 PF04412.8 gi|148643252|ref|YP_001273765.1| - 1.4e-149 498.0 0.0 1.6e-149 497.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase PF00330.15 gi|148643252|ref|YP_001273765.1| - 0.00021 19.8 0.3 0.00033 19.2 0.2 1.2 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DHH PF01368.15 gi|148643253|ref|YP_001273766.1| - 2.6e-11 43.3 3.0 4.4e-11 42.6 2.1 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|148643253|ref|YP_001273766.1| - 1e-09 37.9 0.2 2.4e-09 36.7 0.1 1.7 1 0 0 1 1 1 1 DHHA1 domain Ribosomal_S15 PF00312.17 gi|148643254|ref|YP_001273767.1| - 7.6e-22 76.8 0.5 9.1e-22 76.6 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|148643254|ref|YP_001273767.1| - 1.6e-16 59.8 0.0 2.8e-16 59.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ham1p_like PF01725.11 gi|148643255|ref|YP_001273768.1| - 8.2e-51 172.0 0.0 9.2e-51 171.9 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Arch_ATPase PF01637.13 gi|148643256|ref|YP_001273769.1| - 4e-21 75.8 2.5 1.3e-20 74.0 0.2 2.1 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|148643256|ref|YP_001273769.1| - 3e-11 43.6 0.0 4.7e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|148643256|ref|YP_001273769.1| - 5.6e-08 32.9 0.0 1.1e-06 28.8 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|148643256|ref|YP_001273769.1| - 2.2e-06 27.9 0.2 1.1e-05 25.5 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|148643256|ref|YP_001273769.1| - 7.1e-06 25.9 1.5 0.088 12.7 0.0 3.0 3 1 0 3 3 3 2 AAA domain Bac_DnaA PF00308.13 gi|148643256|ref|YP_001273769.1| - 0.00022 20.9 0.5 0.22 11.1 0.1 2.4 2 0 0 2 2 2 2 Bacterial dnaA protein AAA_35 PF14516.1 gi|148643256|ref|YP_001273769.1| - 0.00085 18.0 0.2 0.34 9.4 0.1 2.3 2 1 0 2 2 2 2 AAA-like domain AAA_24 PF13479.1 gi|148643256|ref|YP_001273769.1| - 0.0022 17.6 0.1 0.025 14.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|148643256|ref|YP_001273769.1| - 0.005 16.5 0.0 0.3 10.7 0.0 2.8 3 0 0 3 3 3 1 NACHT domain DUF4242 PF14026.1 gi|148643256|ref|YP_001273769.1| - 0.071 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4242) AAA_5 PF07728.9 gi|148643256|ref|YP_001273769.1| - 0.076 12.7 0.1 0.31 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|148643257|ref|YP_001273770.1| - 4.8e-16 58.8 0.0 1.3e-15 57.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.1 gi|148643257|ref|YP_001273770.1| - 1.6e-13 50.5 0.0 3.7e-13 49.4 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_33 PF13671.1 gi|148643257|ref|YP_001273770.1| - 0.062 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|148643257|ref|YP_001273770.1| - 0.14 11.9 0.0 0.38 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Peptidase_M22 PF00814.20 gi|148643258|ref|YP_001273771.1| - 3.3e-92 308.7 0.0 5.8e-92 307.9 0.0 1.3 1 0 0 1 1 1 1 Glycoprotease family Pkinase PF00069.20 gi|148643258|ref|YP_001273771.1| - 2.3e-05 23.6 0.7 3.9e-05 22.9 0.5 1.3 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|148643258|ref|YP_001273771.1| - 6.3e-05 22.8 0.0 0.0015 18.3 0.0 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|148643258|ref|YP_001273771.1| - 7.7e-05 21.8 0.0 0.00012 21.2 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.17 gi|148643258|ref|YP_001273771.1| - 0.00011 21.6 0.1 0.00019 20.8 0.0 1.3 1 0 0 1 1 1 1 RIO1 family WaaY PF06176.6 gi|148643258|ref|YP_001273771.1| - 0.014 14.6 1.1 0.024 13.8 0.7 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|148643258|ref|YP_001273771.1| - 0.041 12.9 0.1 0.076 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein tyrosine kinase Borealin PF10512.4 gi|148643259|ref|YP_001273772.1| - 0.081 12.8 0.1 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 Cell division cycle-associated protein 8 DUF1433 PF07252.6 gi|148643259|ref|YP_001273772.1| - 2.8 8.2 7.9 1.9 8.7 0.3 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1433) DBI_PRT PF02277.12 gi|148643260|ref|YP_001273773.1| - 3.4e-22 78.9 1.6 5.5e-22 78.2 1.1 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase BacA PF02673.13 gi|148643261|ref|YP_001273774.1| - 3.9e-79 265.5 17.5 4.4e-79 265.3 12.1 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF423 PF04241.10 gi|148643261|ref|YP_001273774.1| - 0.055 13.3 5.2 0.21 11.4 1.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF423) Aminotran_4 PF01063.14 gi|148643262|ref|YP_001273775.1| - 5.5e-48 163.4 0.0 6.8e-48 163.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Peptidase_M48 PF01435.13 gi|148643263|ref|YP_001273776.1| - 3.8e-25 88.7 0.0 4.9e-25 88.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 zf-ribbon_3 PF13248.1 gi|148643263|ref|YP_001273776.1| - 1.6e-19 68.4 21.2 1.1e-06 27.6 2.3 3.4 3 0 0 3 3 3 3 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148643263|ref|YP_001273776.1| - 2.3e-15 55.5 26.8 1.4e-05 24.3 2.8 3.7 3 0 0 3 3 3 3 zinc-ribbon domain DZR PF12773.2 gi|148643263|ref|YP_001273776.1| - 4.8e-15 55.1 21.9 1.1e-10 41.1 9.6 2.4 2 0 0 2 2 2 2 Double zinc ribbon Peptidase_U49 PF10463.4 gi|148643263|ref|YP_001273776.1| - 0.002 17.9 0.1 0.56 9.9 0.0 2.3 2 0 0 2 2 2 1 Peptidase U49 Nudix_N_2 PF14803.1 gi|148643263|ref|YP_001273776.1| - 0.0094 15.6 20.9 2.7 7.7 0.0 6.1 6 0 0 6 6 6 2 Nudix N-terminal zinc-ribbons_6 PF07191.7 gi|148643263|ref|YP_001273776.1| - 0.0096 15.6 16.6 0.065 13.0 2.9 2.6 1 1 1 2 2 2 2 zinc-ribbons DUF955 PF06114.8 gi|148643263|ref|YP_001273776.1| - 0.028 14.1 0.0 0.06 13.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|148643263|ref|YP_001273776.1| - 0.045 13.4 0.0 0.045 13.4 0.0 2.5 2 1 0 2 2 2 0 SprT-like family DUF2116 PF09889.4 gi|148643263|ref|YP_001273776.1| - 0.15 11.8 14.0 1.2 9.0 0.4 3.5 1 1 2 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) PolC_DP2 PF03833.8 gi|148643263|ref|YP_001273776.1| - 0.2 9.2 11.2 0.29 8.7 7.7 1.2 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 NOB1_Zn_bind PF08772.6 gi|148643263|ref|YP_001273776.1| - 0.23 11.3 26.7 1.3 8.8 2.2 4.3 2 1 2 4 4 4 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.7 gi|148643263|ref|YP_001273776.1| - 0.36 10.2 27.3 2 7.8 2.3 4.9 2 1 3 5 5 5 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|148643263|ref|YP_001273776.1| - 0.96 9.2 19.0 2.1 8.1 0.7 3.6 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-TRM13_CCCH PF11722.3 gi|148643263|ref|YP_001273776.1| - 4.3 6.7 10.6 15 5.0 0.1 3.3 3 0 0 3 3 3 0 CCCH zinc finger in TRM13 protein Stc1 PF12898.2 gi|148643263|ref|YP_001273776.1| - 4.4 7.4 17.7 1 9.4 1.7 2.9 1 1 2 3 3 3 0 Stc1 domain MTD PF01993.13 gi|148643264|ref|YP_001273777.1| - 4.9e-130 432.5 2.8 5.6e-130 432.3 2.0 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase DUF1211 PF06736.6 gi|148643265|ref|YP_001273778.1| - 4.1e-20 71.7 2.8 4.1e-20 71.7 2.0 2.4 2 1 1 3 3 3 1 Protein of unknown function (DUF1211) UPF0104 PF03706.8 gi|148643265|ref|YP_001273778.1| - 0.14 11.4 14.2 0.13 11.5 9.2 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0104) TraS PF10624.4 gi|148643265|ref|YP_001273778.1| - 0.25 10.8 8.2 0.4 10.2 5.7 1.3 1 0 0 1 1 1 0 Plasmid conjugative transfer entry exclusion protein TraS DUF2919 PF11143.3 gi|148643265|ref|YP_001273778.1| - 2.8 7.7 13.9 1.1 9.0 4.4 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2919) Sensor_TM1 PF13755.1 gi|148643265|ref|YP_001273778.1| - 6.2 6.4 9.2 17 5.0 3.1 2.9 2 1 0 2 2 2 0 Sensor N-terminal transmembrane domain IGPD PF00475.13 gi|148643266|ref|YP_001273779.1| - 4e-61 205.1 2.8 5.2e-61 204.7 2.0 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase TOBE PF03459.12 gi|148643267|ref|YP_001273780.1| - 7.3e-10 38.8 0.0 1.5e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 TOBE domain HTH_1 PF00126.22 gi|148643267|ref|YP_001273780.1| - 2.8e-06 26.9 0.0 4.4e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_45 PF14947.1 gi|148643267|ref|YP_001273780.1| - 0.0041 16.9 1.3 0.011 15.5 0.9 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|148643267|ref|YP_001273780.1| - 0.025 14.2 0.5 0.11 12.2 0.1 2.1 2 0 0 2 2 2 0 HTH domain Polysacc_synt PF01943.12 gi|148643268|ref|YP_001273781.1| - 6.8e-37 127.2 25.4 6.8e-37 127.2 17.6 3.1 2 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|148643268|ref|YP_001273781.1| - 1.5e-23 83.2 28.7 1.5e-23 83.2 19.9 4.6 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|148643268|ref|YP_001273781.1| - 2.8e-22 78.7 40.4 5e-22 77.9 28.0 1.4 1 1 0 1 1 1 1 MviN-like protein MatE PF01554.13 gi|148643268|ref|YP_001273781.1| - 7.4e-16 58.1 18.2 7.4e-16 58.1 12.6 4.8 3 2 1 4 4 4 2 MatE Polysacc_synt_3 PF13440.1 gi|148643268|ref|YP_001273781.1| - 3.3e-11 43.1 23.3 3.3e-11 43.1 16.2 2.9 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein FMN_red PF03358.10 gi|148643269|ref|YP_001273782.1| - 2.9e-26 91.8 0.0 3.6e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|148643269|ref|YP_001273782.1| - 0.00011 21.8 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold SNO PF01174.14 gi|148643269|ref|YP_001273782.1| - 0.0083 15.7 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Intg_mem_TP0381 PF09529.5 gi|148643269|ref|YP_001273782.1| - 0.064 12.4 0.0 0.087 12.0 0.0 1.1 1 0 0 1 1 1 0 Integral membrane protein (intg_mem_TP0381) C1_3 PF07649.7 gi|148643269|ref|YP_001273782.1| - 0.66 10.0 7.4 0.95 9.5 3.1 2.4 2 0 0 2 2 2 0 C1-like domain MFS_1 PF07690.11 gi|148643270|ref|YP_001273783.1| - 1.2e-39 136.0 35.0 2.9e-39 134.7 24.3 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|148643270|ref|YP_001273783.1| - 5.5e-09 34.6 7.0 5.5e-09 34.6 4.8 2.1 2 0 0 2 2 2 1 Transmembrane secretion effector PUCC PF03209.10 gi|148643270|ref|YP_001273783.1| - 0.0048 15.6 28.1 0.12 11.0 6.8 2.5 2 1 0 2 2 2 2 PUCC protein DUF308 PF03729.8 gi|148643270|ref|YP_001273783.1| - 0.024 14.6 4.2 0.024 14.6 2.9 6.3 3 2 4 7 7 7 0 Short repeat of unknown function (DUF308) Snapin_Pallidin PF14712.1 gi|148643271|ref|YP_001273784.1| - 0.0001 22.5 9.5 0.0001 22.5 6.6 2.9 1 1 1 3 3 2 1 Snapin/Pallidin DUF972 PF06156.8 gi|148643271|ref|YP_001273784.1| - 0.00038 20.7 27.0 0.014 15.7 1.4 3.8 1 1 2 3 3 3 1 Protein of unknown function (DUF972) bZIP_1 PF00170.16 gi|148643271|ref|YP_001273784.1| - 0.00057 19.7 33.9 0.041 13.8 0.9 5.6 3 1 2 5 5 5 2 bZIP transcription factor DUF869 PF05911.6 gi|148643271|ref|YP_001273784.1| - 0.00079 17.8 27.3 0.00094 17.5 18.9 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Myosin_tail_1 PF01576.14 gi|148643271|ref|YP_001273784.1| - 0.001 16.8 29.8 0.0084 13.8 13.4 2.0 1 1 1 2 2 2 2 Myosin tail CENP-F_leu_zip PF10473.4 gi|148643271|ref|YP_001273784.1| - 0.0017 18.2 13.5 0.0017 18.2 9.3 3.3 1 1 2 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Filament PF00038.16 gi|148643271|ref|YP_001273784.1| - 0.0022 17.5 26.9 0.0032 16.9 18.6 1.1 1 0 0 1 1 1 1 Intermediate filament protein DUF2353 PF09789.4 gi|148643271|ref|YP_001273784.1| - 0.0027 17.0 19.1 0.0044 16.3 13.2 1.4 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) Herpes_U30 PF04523.8 gi|148643271|ref|YP_001273784.1| - 0.0054 14.2 10.2 0.024 12.1 2.3 2.0 1 1 1 2 2 2 2 Herpes virus tegument protein U30 WEMBL PF05701.6 gi|148643271|ref|YP_001273784.1| - 0.01 14.3 22.6 0.016 13.7 15.6 1.4 1 1 0 1 1 1 1 Weak chloroplast movement under blue light WXG100 PF06013.7 gi|148643271|ref|YP_001273784.1| - 0.018 15.0 4.4 2.7 8.0 0.9 3.5 1 1 1 2 2 2 0 Proteins of 100 residues with WXG IncA PF04156.9 gi|148643271|ref|YP_001273784.1| - 0.023 14.2 25.6 0.034 13.7 11.8 2.6 1 1 1 2 2 2 0 IncA protein ADIP PF11559.3 gi|148643271|ref|YP_001273784.1| - 0.028 14.3 25.4 0.034 14.0 6.9 3.1 1 1 3 4 4 4 0 Afadin- and alpha -actinin-Binding FlaC_arch PF05377.6 gi|148643271|ref|YP_001273784.1| - 0.031 14.1 2.4 0.031 14.1 1.7 4.4 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) TSC22 PF01166.13 gi|148643271|ref|YP_001273784.1| - 0.036 14.0 1.5 0.036 14.0 1.1 5.4 2 2 2 4 4 3 0 TSC-22/dip/bun family Nup54 PF13874.1 gi|148643271|ref|YP_001273784.1| - 0.038 13.6 10.8 0.41 10.3 1.2 2.4 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 GAS PF13851.1 gi|148643271|ref|YP_001273784.1| - 0.039 13.1 38.6 0.049 12.8 12.6 2.8 1 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding DUF904 PF06005.7 gi|148643271|ref|YP_001273784.1| - 0.041 14.1 35.5 0.97 9.7 2.5 5.0 1 1 2 3 3 3 0 Protein of unknown function (DUF904) Cytochrom_C_2 PF01322.15 gi|148643271|ref|YP_001273784.1| - 0.05 14.1 4.3 3 8.3 0.9 2.3 1 1 1 2 2 2 0 Cytochrome C' Atg14 PF10186.4 gi|148643271|ref|YP_001273784.1| - 0.073 12.0 18.9 0.12 11.3 11.8 2.0 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Cep57_MT_bd PF06657.8 gi|148643271|ref|YP_001273784.1| - 0.085 12.8 11.2 0.2 11.6 0.4 3.7 3 0 0 3 3 3 0 Centrosome microtubule-binding domain of Cep57 BLOC1_2 PF10046.4 gi|148643271|ref|YP_001273784.1| - 0.15 12.2 34.0 0.042 13.9 5.3 3.7 1 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Reo_sigmaC PF04582.7 gi|148643271|ref|YP_001273784.1| - 0.16 11.1 7.4 1.8 7.6 1.6 2.1 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Spc24 PF08286.6 gi|148643271|ref|YP_001273784.1| - 0.23 11.1 33.1 0.065 12.9 1.7 4.3 2 2 2 4 4 4 0 Spc24 subunit of Ndc80 DUF3166 PF11365.3 gi|148643271|ref|YP_001273784.1| - 0.33 11.4 9.8 0.039 14.3 1.9 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3166) DUF1664 PF07889.7 gi|148643271|ref|YP_001273784.1| - 0.33 10.7 20.1 0.028 14.2 5.9 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) Rootletin PF15035.1 gi|148643271|ref|YP_001273784.1| - 0.42 10.5 22.6 3.8 7.4 14.5 2.4 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion TMCO5 PF14992.1 gi|148643271|ref|YP_001273784.1| - 0.5 9.4 36.6 1.3 8.0 19.7 2.6 1 1 1 2 2 2 0 TMCO5 family Mod_r PF07200.8 gi|148643271|ref|YP_001273784.1| - 0.61 9.9 28.7 0.093 12.6 10.7 2.9 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein CCDC155 PF14662.1 gi|148643271|ref|YP_001273784.1| - 0.9 9.1 24.9 0.46 10.0 2.7 3.1 1 1 2 3 3 3 0 Coiled-coil region of CCDC155 Med9 PF07544.8 gi|148643271|ref|YP_001273784.1| - 1 9.1 10.5 1.5 8.5 2.6 3.1 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Sec34 PF04136.10 gi|148643271|ref|YP_001273784.1| - 1.4 8.5 25.0 3.3 7.3 5.3 3.8 1 1 3 4 4 4 0 Sec34-like family AATF-Che1 PF13339.1 gi|148643271|ref|YP_001273784.1| - 1.6 8.9 18.5 6.2 6.9 1.5 2.6 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor DUF4472 PF14739.1 gi|148643271|ref|YP_001273784.1| - 1.6 9.2 20.7 2.7 8.5 7.8 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4472) RTBV_P12 PF06361.6 gi|148643271|ref|YP_001273784.1| - 1.6 9.0 9.3 0.18 12.0 2.0 2.7 2 1 1 3 3 3 0 Rice tungro bacilliform virus P12 protein DUF4201 PF13870.1 gi|148643271|ref|YP_001273784.1| - 1.8 7.9 35.3 0.62 9.4 19.3 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) DUF4164 PF13747.1 gi|148643271|ref|YP_001273784.1| - 1.9 8.6 11.1 2 8.5 1.7 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4164) HAP1_N PF04849.8 gi|148643271|ref|YP_001273784.1| - 2.4 7.0 28.5 0.55 9.1 10.8 2.6 1 1 1 2 2 2 0 HAP1 N-terminal conserved region Laminin_II PF06009.7 gi|148643271|ref|YP_001273784.1| - 2.5 7.8 20.3 1.7 8.4 2.0 2.5 1 1 1 2 2 2 0 Laminin Domain II Jnk-SapK_ap_N PF09744.4 gi|148643271|ref|YP_001273784.1| - 2.5 8.0 33.8 0.35 10.8 11.1 3.3 1 1 2 3 3 3 0 JNK_SAPK-associated protein-1 Ax_dynein_light PF10211.4 gi|148643271|ref|YP_001273784.1| - 3 7.6 32.7 0.54 10.0 7.3 3.4 2 1 1 3 3 3 0 Axonemal dynein light chain TMF_TATA_bd PF12325.3 gi|148643271|ref|YP_001273784.1| - 3 7.5 26.5 2.9 7.6 4.9 3.5 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding DUF724 PF05266.9 gi|148643271|ref|YP_001273784.1| - 3.3 7.2 24.5 1.2 8.6 8.6 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF724) APG6 PF04111.7 gi|148643271|ref|YP_001273784.1| - 3.8 6.4 38.1 0.96 8.4 11.2 2.5 1 1 1 2 2 2 0 Autophagy protein Apg6 TPR_MLP1_2 PF07926.7 gi|148643271|ref|YP_001273784.1| - 4.6 7.0 35.6 9.9 5.9 20.7 3.7 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein Cupin_8 PF13621.1 gi|148643271|ref|YP_001273784.1| - 5.5 6.4 18.2 0.32 10.4 7.9 2.2 1 1 2 3 3 3 0 Cupin-like domain Tropomyosin_1 PF12718.2 gi|148643271|ref|YP_001273784.1| - 8.3 6.2 33.4 2.3 8.0 4.4 3.2 1 1 0 2 2 2 0 Tropomyosin like DUF2205 PF10224.4 gi|148643271|ref|YP_001273784.1| - 9.9 5.8 24.3 8.7 5.9 2.4 3.3 1 1 2 3 3 3 0 Predicted coiled-coil protein (DUF2205) Zn_ribbon_2 PF12674.2 gi|148643272|ref|YP_001273785.1| - 6.8e-25 87.2 0.1 7.7e-25 87.0 0.1 1.0 1 0 0 1 1 1 1 Putative zinc ribbon domain LIM PF00412.17 gi|148643272|ref|YP_001273785.1| - 0.093 12.8 0.3 0.18 11.8 0.2 1.5 1 0 0 1 1 1 0 LIM domain ZZ PF00569.12 gi|148643272|ref|YP_001273785.1| - 0.34 10.4 2.7 2 8.0 1.9 1.9 1 1 0 1 1 1 0 Zinc finger, ZZ type Fae PF08714.6 gi|148643273|ref|YP_001273786.1| - 6.9e-69 230.6 0.1 1.6e-68 229.4 0.1 1.7 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|148643273|ref|YP_001273786.1| - 2.8e-27 95.5 0.7 4.3e-27 94.9 0.5 1.3 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|148643273|ref|YP_001273786.1| - 0.001 18.2 0.3 0.0017 17.4 0.2 1.6 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|148643273|ref|YP_001273786.1| - 0.0062 15.8 2.7 0.044 13.0 0.2 2.2 2 0 0 2 2 2 1 PcrB family QRPTase_C PF01729.14 gi|148643273|ref|YP_001273786.1| - 0.036 13.6 0.1 0.082 12.4 0.0 1.6 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain tRNA-Thr_ED PF08915.6 gi|148643274|ref|YP_001273787.1| - 3.7e-57 192.1 0.2 3.7e-57 192.1 0.1 1.8 2 0 0 2 2 2 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|148643274|ref|YP_001273787.1| - 4.3e-24 84.2 1.6 9.7e-24 83.1 1.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|148643274|ref|YP_001273787.1| - 2.1e-19 69.7 0.1 4.4e-19 68.7 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Rotamase PF00639.16 gi|148643274|ref|YP_001273787.1| - 0.018 15.7 0.0 0.071 13.8 0.0 2.0 2 0 0 2 2 2 0 PPIC-type PPIASE domain Glycoamylase PF10091.4 gi|148643274|ref|YP_001273787.1| - 0.098 11.7 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative glucoamylase GATase_3 PF07685.9 gi|148643275|ref|YP_001273788.1| - 6e-28 97.4 0.1 8.5e-28 96.9 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|148643275|ref|YP_001273788.1| - 1.9e-26 92.6 1.0 3.4e-26 91.8 0.7 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|148643275|ref|YP_001273788.1| - 1.1e-14 54.5 3.9 2.4e-10 40.3 0.4 2.5 1 1 1 2 2 2 2 AAA domain SNO PF01174.14 gi|148643275|ref|YP_001273788.1| - 0.00021 20.9 0.0 0.00057 19.5 0.0 1.8 1 0 0 1 1 1 1 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.19 gi|148643275|ref|YP_001273788.1| - 0.00094 18.6 0.0 0.0022 17.4 0.0 1.6 1 0 0 1 1 1 1 DJ-1/PfpI family DUF1027 PF06265.6 gi|148643275|ref|YP_001273788.1| - 0.02 14.7 0.1 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1027) AAA_18 PF13238.1 gi|148643275|ref|YP_001273788.1| - 0.049 13.9 0.0 0.17 12.2 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|148643275|ref|YP_001273788.1| - 0.078 13.7 0.2 0.27 12.0 0.1 2.2 1 1 0 1 1 1 0 AAA domain DUF4066 PF13278.1 gi|148643275|ref|YP_001273788.1| - 0.085 12.1 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative amidotransferase DUF4606 PF15379.1 gi|148643275|ref|YP_001273788.1| - 0.15 12.1 0.3 0.4 10.7 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4606) DUF1611 PF07755.6 gi|148643275|ref|YP_001273788.1| - 0.18 10.4 1.7 0.36 9.4 0.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1611) DUF70 PF01901.11 gi|148643276|ref|YP_001273789.1| - 5.2e-101 338.0 52.4 6e-101 337.7 36.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF70 O-ag_pol_Wzy PF14296.1 gi|148643276|ref|YP_001273789.1| - 0.0014 17.3 47.3 0.045 12.3 5.7 2.2 2 0 0 2 2 2 2 O-antigen polysaccharide polymerase Wzy Mrr_cat PF04471.7 gi|148643277|ref|YP_001273790.1| - 1.5e-16 60.2 0.2 2.3e-16 59.6 0.1 1.3 1 0 0 1 1 1 1 Restriction endonuclease DUF2034 PF10356.4 gi|148643277|ref|YP_001273790.1| - 0.029 13.5 0.0 0.043 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2034) Nif11 PF07862.6 gi|148643277|ref|YP_001273790.1| - 0.042 13.8 0.4 11 6.0 0.0 2.6 2 0 0 2 2 2 0 Nitrogen fixation protein of unknown function OppC_N PF12911.2 gi|148643277|ref|YP_001273790.1| - 0.058 12.7 0.5 0.058 12.7 0.3 3.2 3 1 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C SurE PF01975.12 gi|148643278|ref|YP_001273791.1| - 4.7e-58 195.7 0.0 6e-58 195.4 0.0 1.0 1 0 0 1 1 1 1 Survival protein SurE DASH_Dad3 PF08656.5 gi|148643279|ref|YP_001273792.1| - 0.0013 18.3 1.4 0.0015 18.2 1.0 1.1 1 0 0 1 1 1 1 DASH complex subunit Dad3 Matrilin_ccoil PF10393.4 gi|148643279|ref|YP_001273792.1| - 0.049 12.9 0.4 0.077 12.3 0.3 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin Rep_fac_C PF08542.6 gi|148643279|ref|YP_001273792.1| - 0.077 12.9 0.1 0.079 12.9 0.1 1.1 1 0 0 1 1 1 0 Replication factor C C-terminal domain Prefoldin_2 PF01920.15 gi|148643279|ref|YP_001273792.1| - 0.091 12.5 2.1 0.094 12.4 1.5 1.1 1 0 0 1 1 1 0 Prefoldin subunit Orthopox_B11R PF07033.6 gi|148643279|ref|YP_001273792.1| - 0.2 11.1 1.2 0.3 10.5 0.8 1.3 1 1 0 1 1 1 0 Orthopoxvirus B11R protein NTR2 PF15458.1 gi|148643279|ref|YP_001273792.1| - 0.34 10.1 2.5 0.37 10.0 1.8 1.0 1 0 0 1 1 1 0 Nineteen complex-related protein 2 LSM PF01423.17 gi|148643280|ref|YP_001273793.1| - 3.4e-07 29.7 2.4 1.3e-06 27.8 1.6 1.8 1 1 0 1 1 1 1 LSM domain BPL_C PF02237.12 gi|148643280|ref|YP_001273793.1| - 0.0008 19.0 0.3 0.001 18.7 0.2 1.1 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain SAM_adeno_trans PF01887.11 gi|148643280|ref|YP_001273793.1| - 0.076 12.0 0.0 0.076 12.0 0.0 1.0 1 0 0 1 1 1 0 S-adenosyl-l-methionine hydroxide adenosyltransferase DUF1464 PF07318.7 gi|148643281|ref|YP_001273794.1| - 1.4e-06 27.3 6.2 3.6e-05 22.7 4.3 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1464) BcrAD_BadFG PF01869.15 gi|148643281|ref|YP_001273794.1| - 3.2e-06 26.6 3.6 0.0011 18.3 0.3 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family Acetate_kinase PF00871.12 gi|148643281|ref|YP_001273794.1| - 0.00021 19.9 0.2 0.00041 18.9 0.1 1.5 2 0 0 2 2 2 1 Acetokinase family IlvN PF07991.7 gi|148643282|ref|YP_001273795.1| - 5.2e-69 230.8 0.2 7.7e-69 230.2 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|148643282|ref|YP_001273795.1| - 3.1e-51 173.1 0.5 4.5e-51 172.5 0.4 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|148643282|ref|YP_001273795.1| - 4.5e-07 29.1 0.0 7.7e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|148643282|ref|YP_001273795.1| - 9.3e-07 28.8 0.1 1.8e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|148643282|ref|YP_001273795.1| - 5e-06 26.8 0.1 1.4e-05 25.3 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|148643282|ref|YP_001273795.1| - 8.1e-05 22.5 0.0 0.00018 21.4 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain YfaZ PF07437.6 gi|148643282|ref|YP_001273795.1| - 0.0095 15.3 0.5 0.03 13.7 0.0 1.9 2 0 0 2 2 2 1 YfaZ precursor Leukocidin PF07968.7 gi|148643282|ref|YP_001273795.1| - 0.064 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Leukocidin/Hemolysin toxin family Pro_CA PF00484.14 gi|148643283|ref|YP_001273796.1| - 2.3e-27 95.8 0.0 2.9e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase ALS_ss_C PF10369.4 gi|148643284|ref|YP_001273797.1| - 6.5e-30 102.6 0.3 6.5e-30 102.6 0.2 1.9 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|148643284|ref|YP_001273797.1| - 3e-19 68.5 0.1 5.5e-19 67.7 0.1 1.4 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|148643284|ref|YP_001273797.1| - 4e-17 61.3 0.2 9e-17 60.1 0.1 1.6 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|148643284|ref|YP_001273797.1| - 1.7e-06 28.3 0.5 1.7e-06 28.3 0.3 1.8 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|148643284|ref|YP_001273797.1| - 0.012 15.3 0.5 0.082 12.6 0.0 2.5 3 0 0 3 3 3 0 ACT domain SIMPL PF04402.9 gi|148643284|ref|YP_001273797.1| - 0.02 14.7 0.2 0.028 14.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF541) NIL PF09383.5 gi|148643284|ref|YP_001273797.1| - 0.029 13.9 0.3 0.69 9.5 0.0 2.4 2 1 0 2 2 2 0 NIL domain TPP_enzyme_N PF02776.13 gi|148643285|ref|YP_001273798.1| - 1.9e-60 203.2 0.0 3.2e-58 196.0 0.0 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|148643285|ref|YP_001273798.1| - 3.5e-50 169.5 0.0 8.7e-50 168.2 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|148643285|ref|YP_001273798.1| - 4.4e-42 143.0 0.3 9.6e-42 141.9 0.1 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain OTCace PF00185.19 gi|148643286|ref|YP_001273799.1| - 3.1e-57 192.8 0.1 4.4e-57 192.3 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|148643286|ref|YP_001273799.1| - 9.3e-46 155.0 0.0 1.4e-45 154.4 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DUF2122 PF09895.4 gi|148643286|ref|YP_001273799.1| - 0.16 12.2 0.6 0.39 10.9 0.1 1.9 2 0 0 2 2 2 0 RecB-family nuclease (DUF2122) GARS_A PF01071.14 gi|148643287|ref|YP_001273800.1| - 1.3e-62 210.8 0.1 1.8e-62 210.3 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|148643287|ref|YP_001273800.1| - 1.7e-30 105.3 0.2 4.4e-30 104.1 0.1 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|148643287|ref|YP_001273800.1| - 2.3e-22 78.9 0.1 6.9e-22 77.4 0.1 1.8 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|148643287|ref|YP_001273800.1| - 8.9e-17 61.4 0.0 4.2e-16 59.2 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|148643287|ref|YP_001273800.1| - 4.2e-08 32.3 0.0 3.4e-07 29.3 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|148643287|ref|YP_001273800.1| - 0.00012 22.0 0.0 0.00041 20.2 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.1 gi|148643287|ref|YP_001273800.1| - 0.00022 20.4 0.1 0.0022 17.1 0.0 2.3 3 0 0 3 3 3 1 Sugar-transfer associated ATP-grasp MatE PF01554.13 gi|148643288|ref|YP_001273801.1| - 1.2e-46 158.3 54.8 1.5e-26 92.9 9.1 3.1 3 1 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|148643288|ref|YP_001273801.1| - 5.5e-06 26.2 19.6 5.5e-06 26.2 13.6 5.2 2 2 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain DUF912 PF06024.7 gi|148643288|ref|YP_001273801.1| - 6.6 6.8 6.9 41 4.3 0.9 3.1 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) MatE PF01554.13 gi|148643289|ref|YP_001273802.1| - 4.4e-50 169.4 42.9 3.9e-26 91.6 13.7 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|148643289|ref|YP_001273802.1| - 5.2e-05 23.0 17.9 5.2e-05 23.0 12.4 4.5 3 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Ni_hydr_CYTB PF01292.15 gi|148643289|ref|YP_001273802.1| - 3.6 6.9 13.8 0.2 10.9 4.8 2.3 2 0 0 2 2 2 0 Prokaryotic cytochrome b561 MarR PF01047.17 gi|148643290|ref|YP_001273803.1| - 3.3e-14 52.3 0.0 5.7e-14 51.5 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|148643290|ref|YP_001273803.1| - 2.3e-10 39.9 0.0 3.1e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|148643290|ref|YP_001273803.1| - 8.8e-10 38.7 0.0 1.2e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|148643290|ref|YP_001273803.1| - 2.8e-07 30.4 0.3 5e-07 29.6 0.0 1.5 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|148643290|ref|YP_001273803.1| - 4.8e-07 29.0 0.1 8.9e-07 28.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|148643290|ref|YP_001273803.1| - 5.7e-06 25.9 0.4 2.7e-05 23.7 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|148643290|ref|YP_001273803.1| - 1.6e-05 24.5 0.0 2.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain PadR PF03551.9 gi|148643290|ref|YP_001273803.1| - 2.3e-05 24.0 1.2 0.00045 19.9 0.2 2.3 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HTH_36 PF13730.1 gi|148643290|ref|YP_001273803.1| - 0.00032 20.7 0.0 0.00057 19.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|148643290|ref|YP_001273803.1| - 0.00038 20.3 0.0 0.0013 18.5 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|148643290|ref|YP_001273803.1| - 0.00049 19.8 0.7 0.00073 19.3 0.1 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix Phage_rep_org_N PF09681.5 gi|148643290|ref|YP_001273803.1| - 0.0007 19.1 0.2 0.0011 18.5 0.1 1.3 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_29 PF13551.1 gi|148643290|ref|YP_001273803.1| - 0.0018 18.4 0.0 0.0024 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_4 PF13613.1 gi|148643290|ref|YP_001273803.1| - 0.0028 17.1 0.0 0.0052 16.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease HTH_5 PF01022.15 gi|148643290|ref|YP_001273803.1| - 0.0046 16.5 0.0 0.0068 16.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|148643290|ref|YP_001273803.1| - 0.0073 15.7 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family CENP-B_N PF04218.8 gi|148643290|ref|YP_001273803.1| - 0.0082 15.5 0.1 0.027 13.8 0.0 1.9 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain HTH_28 PF13518.1 gi|148643290|ref|YP_001273803.1| - 0.0086 16.0 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|148643290|ref|YP_001273803.1| - 0.009 15.8 0.2 0.035 13.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase Cullin_Nedd8 PF10557.4 gi|148643290|ref|YP_001273803.1| - 0.014 15.2 0.2 0.014 15.2 0.1 1.8 2 0 0 2 2 1 0 Cullin protein neddylation domain B-block_TFIIIC PF04182.7 gi|148643290|ref|YP_001273803.1| - 0.018 14.9 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_11 PF08279.7 gi|148643290|ref|YP_001273803.1| - 0.019 14.6 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain TFIIE_alpha PF02002.12 gi|148643290|ref|YP_001273803.1| - 0.022 14.2 0.3 0.033 13.6 0.2 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit HxlR PF01638.12 gi|148643290|ref|YP_001273803.1| - 0.023 14.3 0.2 0.061 12.9 0.1 1.7 1 1 1 2 2 2 0 HxlR-like helix-turn-helix HTH_23 PF13384.1 gi|148643290|ref|YP_001273803.1| - 0.023 14.3 0.0 0.049 13.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_20 PF12840.2 gi|148643290|ref|YP_001273803.1| - 0.024 14.4 0.0 0.038 13.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Replic_Relax PF13814.1 gi|148643290|ref|YP_001273803.1| - 0.026 14.3 0.0 0.032 14.0 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Penicillinase_R PF03965.11 gi|148643290|ref|YP_001273803.1| - 0.029 14.4 0.7 0.087 12.9 0.4 1.9 1 1 0 1 1 1 0 Penicillinase repressor HTH_IclR PF09339.5 gi|148643290|ref|YP_001273803.1| - 0.034 13.7 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|148643290|ref|YP_001273803.1| - 0.05 13.1 0.0 0.087 12.3 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain z-alpha PF02295.12 gi|148643290|ref|YP_001273803.1| - 0.071 12.8 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HCV_NS5a_C PF12941.2 gi|148643290|ref|YP_001273803.1| - 0.079 12.5 0.1 0.088 12.3 0.1 1.1 1 0 0 1 1 1 0 HCV NS5a protein C-terminal region CheR_N PF03705.10 gi|148643290|ref|YP_001273803.1| - 0.12 11.7 0.3 2.3 7.6 0.0 2.5 2 0 0 2 2 2 0 CheR methyltransferase, all-alpha domain Rrf2 PF02082.15 gi|148643290|ref|YP_001273803.1| - 0.13 12.3 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator tRNA-synt_1d PF00750.14 gi|148643291|ref|YP_001273804.1| - 1.3e-56 191.9 0.1 1.9e-56 191.4 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|148643291|ref|YP_001273804.1| - 4.3e-33 113.7 0.0 1.8e-32 111.8 0.0 2.0 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|148643291|ref|YP_001273804.1| - 1.1e-20 73.9 3.0 1.3e-20 73.6 0.7 2.3 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|148643291|ref|YP_001273804.1| - 4.4e-09 35.4 0.0 9e-05 21.3 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|148643291|ref|YP_001273804.1| - 7.1e-05 21.6 0.1 0.053 12.1 0.0 4.0 4 1 1 5 5 5 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|148643291|ref|YP_001273804.1| - 0.049 11.6 0.0 0.11 10.4 0.0 1.6 2 0 0 2 2 2 0 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|148643291|ref|YP_001273804.1| - 0.066 12.3 0.1 0.14 11.2 0.0 1.6 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain Peptidase_S24 PF00717.18 gi|148643292|ref|YP_001273805.1| - 6e-09 35.4 0.3 8.6e-09 34.9 0.2 1.3 1 0 0 1 1 1 1 Peptidase S24-like Aminotran_3 PF00202.16 gi|148643293|ref|YP_001273806.1| - 2.9e-66 223.6 0.0 4.1e-66 223.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III CbiC PF02570.10 gi|148643294|ref|YP_001273807.1| - 1e-64 217.6 1.3 1.1e-64 217.4 0.9 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase SDH_sah PF01972.11 gi|148643294|ref|YP_001273807.1| - 0.039 12.7 0.0 0.05 12.3 0.0 1.3 1 0 0 1 1 1 0 Serine dehydrogenase proteinase Aldo_ket_red PF00248.16 gi|148643294|ref|YP_001273807.1| - 0.048 12.4 0.0 0.061 12.1 0.0 1.2 1 0 0 1 1 1 0 Aldo/keto reductase family HI0933_like PF03486.9 gi|148643295|ref|YP_001273808.1| - 3.5e-100 335.3 0.0 4e-100 335.1 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|148643295|ref|YP_001273808.1| - 4e-09 35.8 0.2 9.9e-07 27.9 0.1 2.6 3 0 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.2 gi|148643295|ref|YP_001273808.1| - 1.1e-07 31.2 0.0 1.5e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|148643295|ref|YP_001273808.1| - 4.6e-07 29.9 0.3 1.4e-06 28.3 0.2 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|148643295|ref|YP_001273808.1| - 5.5e-06 25.4 3.6 0.019 13.8 0.2 3.2 3 0 0 3 3 3 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|148643295|ref|YP_001273808.1| - 1.3e-05 24.4 0.1 3.7e-05 22.9 0.0 1.8 2 0 0 2 2 2 1 Thi4 family DAO PF01266.19 gi|148643295|ref|YP_001273808.1| - 7.7e-05 21.7 0.0 0.0012 17.8 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|148643295|ref|YP_001273808.1| - 0.00011 22.3 0.1 0.00039 20.5 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|148643295|ref|YP_001273808.1| - 0.0035 17.3 0.2 0.0076 16.2 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|148643295|ref|YP_001273808.1| - 0.0051 15.4 0.0 0.0069 15.0 0.0 1.2 1 0 0 1 1 1 1 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|148643295|ref|YP_001273808.1| - 0.016 14.1 0.7 0.024 13.5 0.5 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|148643295|ref|YP_001273808.1| - 0.017 14.2 0.1 0.026 13.5 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.22 gi|148643295|ref|YP_001273808.1| - 0.029 14.7 1.2 0.78 10.1 0.2 2.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|148643295|ref|YP_001273808.1| - 0.09 12.5 0.0 0.32 10.7 0.0 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding tRNA-synt_2 PF00152.15 gi|148643296|ref|YP_001273809.1| - 1.5e-92 309.9 0.2 1.9e-92 309.5 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|148643296|ref|YP_001273809.1| - 2.2e-14 53.0 0.7 2.2e-14 53.0 0.5 1.6 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|148643296|ref|YP_001273809.1| - 1.7e-06 27.4 0.5 0.0046 16.1 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) ILVD_EDD PF00920.16 gi|148643297|ref|YP_001273810.1| - 4.3e-214 711.7 5.8 4.8e-214 711.6 4.0 1.0 1 0 0 1 1 1 1 Dehydratase family Histidinol_dh PF00815.15 gi|148643298|ref|YP_001273811.1| - 7.8e-174 578.1 2.0 8.9e-174 577.9 1.4 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Peptidase_M3 PF01432.15 gi|148643298|ref|YP_001273811.1| - 0.077 12.0 1.5 0.11 11.5 1.1 1.2 1 0 0 1 1 1 0 Peptidase family M3 Retrotrans_gag PF03732.12 gi|148643298|ref|YP_001273811.1| - 0.097 12.7 0.1 0.19 11.8 0.1 1.4 1 0 0 1 1 1 0 Retrotransposon gag protein Radical_SAM PF04055.16 gi|148643299|ref|YP_001273812.1| - 4e-09 36.8 0.1 6.2e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.2 gi|148643299|ref|YP_001273812.1| - 6e-07 29.3 0.4 2.4e-06 27.3 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif Fer4_12 PF13353.1 gi|148643299|ref|YP_001273812.1| - 0.00011 22.2 2.0 0.00015 21.8 0.5 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain HHH PF00633.18 gi|148643299|ref|YP_001273812.1| - 0.0035 16.9 0.0 0.013 15.1 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF1186 PF06685.6 gi|148643299|ref|YP_001273812.1| - 0.053 12.6 0.2 0.41 9.7 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1186) HHH_5 PF14520.1 gi|148643299|ref|YP_001273812.1| - 0.11 12.7 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain CbiA PF01656.18 gi|148643301|ref|YP_001273814.1| - 2.5e-37 128.2 0.9 2.9e-37 127.9 0.6 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|148643301|ref|YP_001273814.1| - 2.6e-13 50.2 0.1 7e-13 48.7 0.0 1.7 2 1 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|148643301|ref|YP_001273814.1| - 5e-12 45.4 0.4 1.1e-10 41.0 0.3 2.0 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|148643301|ref|YP_001273814.1| - 2.6e-11 43.2 0.2 1.1e-07 31.3 0.4 2.0 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|148643301|ref|YP_001273814.1| - 2e-09 37.1 0.0 4.7e-09 35.9 0.0 1.5 1 1 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|148643301|ref|YP_001273814.1| - 1.6e-07 30.7 0.4 3e-07 29.7 0.3 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase VirC1 PF07015.6 gi|148643301|ref|YP_001273814.1| - 0.012 14.6 0.2 0.026 13.6 0.1 1.5 1 0 0 1 1 1 0 VirC1 protein AAA_19 PF13245.1 gi|148643301|ref|YP_001273814.1| - 0.034 13.8 0.1 0.067 12.9 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain ArgK PF03308.11 gi|148643301|ref|YP_001273814.1| - 0.11 11.3 0.2 0.19 10.5 0.1 1.3 1 0 0 1 1 1 0 ArgK protein PALP PF00291.20 gi|148643302|ref|YP_001273815.1| - 2.9e-40 138.3 0.0 3.5e-40 138.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1786 PF08735.5 gi|148643303|ref|YP_001273816.1| - 4.2e-100 334.1 0.3 5.1e-100 333.8 0.2 1.1 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) FtsA PF14450.1 gi|148643303|ref|YP_001273816.1| - 0.0015 18.3 0.0 2.8 7.8 0.0 2.8 3 0 0 3 3 3 2 Cell division protein FtsA MreB_Mbl PF06723.8 gi|148643303|ref|YP_001273816.1| - 0.044 12.3 1.2 4.9 5.6 0.0 2.6 3 0 0 3 3 3 0 MreB/Mbl protein Hydantoinase_A PF01968.13 gi|148643303|ref|YP_001273816.1| - 0.088 11.9 1.0 2 7.4 0.0 3.1 3 1 1 4 4 4 0 Hydantoinase/oxoprolinase PHP_C PF13263.1 gi|148643304|ref|YP_001273817.1| - 1.5e-12 46.8 0.0 2.4e-12 46.1 0.0 1.4 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|148643304|ref|YP_001273817.1| - 8.7e-11 41.9 0.5 7.5e-10 38.8 0.2 2.3 2 1 0 2 2 2 1 PHP domain Alba PF01918.16 gi|148643305|ref|YP_001273818.1| - 7.3e-17 60.7 0.0 1.1e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Alba HMGL-like PF00682.14 gi|148643306|ref|YP_001273819.1| - 3.6e-75 252.6 0.1 6.4e-75 251.8 0.1 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|148643306|ref|YP_001273819.1| - 1.6e-32 112.0 2.7 1.7e-32 111.9 0.6 2.0 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.19 gi|148643306|ref|YP_001273819.1| - 0.08 12.2 0.1 0.43 9.8 0.0 2.2 2 1 1 3 3 3 0 Xylose isomerase-like TIM barrel PQQ_3 PF13570.1 gi|148643307|ref|YP_001273820.1| - 1.1e-61 203.5 9.6 3.1e-09 36.8 0.2 8.2 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|148643307|ref|YP_001273820.1| - 8.7e-46 156.3 0.8 6.3e-17 61.8 0.0 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|148643307|ref|YP_001273820.1| - 3e-33 111.6 13.1 7.6e-07 28.3 0.0 8.5 9 0 0 9 9 9 7 PQQ enzyme repeat DUF4394 PF14339.1 gi|148643307|ref|YP_001273820.1| - 0.065 12.5 4.0 4.9 6.3 0.1 4.2 1 1 2 5 5 5 0 Domain of unknown function (DUF4394) OPT PF03169.10 gi|148643307|ref|YP_001273820.1| - 0.49 8.7 2.6 0.32 9.3 0.2 1.7 2 0 0 2 2 2 0 OPT oligopeptide transporter protein ABC2_membrane_3 PF12698.2 gi|148643308|ref|YP_001273821.1| - 2.1e-50 171.6 18.8 3.1e-50 171.1 13.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|148643308|ref|YP_001273821.1| - 3e-35 121.2 24.9 4.5e-33 114.1 10.6 2.5 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|148643308|ref|YP_001273821.1| - 5.9e-20 71.2 10.7 1e-19 70.4 7.4 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|148643308|ref|YP_001273821.1| - 5.5e-05 22.4 5.8 5.5e-05 22.4 4.0 2.6 2 1 0 2 2 2 1 CcmB protein Flu_PB1 PF00602.12 gi|148643308|ref|YP_001273821.1| - 0.07 10.8 1.2 0.11 10.1 0.2 1.6 2 0 0 2 2 2 0 Influenza RNA-dependent RNA polymerase subunit PB1 ABC2_membrane_5 PF13346.1 gi|148643308|ref|YP_001273821.1| - 6.1 6.0 24.6 5 6.3 13.1 2.6 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|148643309|ref|YP_001273822.1| - 1.9e-32 112.4 0.1 6.6e-32 110.6 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|148643309|ref|YP_001273822.1| - 8.6e-18 65.2 4.8 3.5e-12 46.8 0.0 3.1 2 1 1 3 3 3 2 AAA domain DUF4162 PF13732.1 gi|148643309|ref|YP_001273822.1| - 4.1e-07 30.3 1.2 1.1e-06 28.9 0.1 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4162) SbcCD_C PF13558.1 gi|148643309|ref|YP_001273822.1| - 5.3e-05 23.0 0.0 0.00079 19.2 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|148643309|ref|YP_001273822.1| - 6.5e-05 22.2 0.1 0.039 13.1 0.0 2.4 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain Rad17 PF03215.10 gi|148643309|ref|YP_001273822.1| - 0.0053 15.4 0.0 0.0092 14.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|148643309|ref|YP_001273822.1| - 0.015 15.6 11.2 0.14 12.5 7.8 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|148643309|ref|YP_001273822.1| - 0.015 14.7 0.1 0.034 13.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.17 gi|148643309|ref|YP_001273822.1| - 0.048 13.1 0.1 0.11 11.8 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|148643309|ref|YP_001273822.1| - 0.12 12.5 1.1 0.33 11.1 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|148643309|ref|YP_001273822.1| - 0.12 12.5 0.7 1.4 9.1 0.5 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PadR PF03551.9 gi|148643310|ref|YP_001273823.1| - 6.3e-16 57.9 0.0 1.1e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|148643310|ref|YP_001273823.1| - 0.00083 19.3 0.1 0.0013 18.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|148643310|ref|YP_001273823.1| - 0.0057 16.5 0.4 0.25 11.2 0.1 2.5 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) NAD_binding_5 PF07994.7 gi|148643310|ref|YP_001273823.1| - 0.0089 15.5 0.0 0.011 15.2 0.0 1.1 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase DUF505 PF04458.7 gi|148643310|ref|YP_001273823.1| - 0.013 13.6 0.1 0.015 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_45 PF14947.1 gi|148643310|ref|YP_001273823.1| - 0.016 14.9 0.2 0.039 13.7 0.2 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DUF3116 PF11313.3 gi|148643310|ref|YP_001273823.1| - 0.026 14.1 0.4 0.054 13.1 0.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) DUF4364 PF14277.1 gi|148643310|ref|YP_001273823.1| - 0.027 14.0 0.3 0.037 13.6 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) HxlR PF01638.12 gi|148643310|ref|YP_001273823.1| - 0.066 12.8 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix TrmB PF01978.14 gi|148643310|ref|YP_001273823.1| - 0.14 11.9 0.1 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AP_endonuc_2 PF01261.19 gi|148643311|ref|YP_001273824.1| - 4.5e-24 84.9 0.0 5.6e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Hydrolase PF00702.21 gi|148643312|ref|YP_001273825.1| - 8.4e-22 78.6 0.0 1.1e-21 78.2 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|148643312|ref|YP_001273825.1| - 3.8e-10 40.2 0.2 5.4e-10 39.7 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|148643312|ref|YP_001273825.1| - 6.8e-05 22.5 4.3 0.093 12.2 0.1 3.1 2 1 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|148643312|ref|YP_001273825.1| - 0.0044 17.2 0.0 0.51 10.5 0.0 2.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|148643312|ref|YP_001273825.1| - 0.045 13.4 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 HAD-hyrolase-like Amidase PF01425.16 gi|148643313|ref|YP_001273826.1| - 4.6e-123 411.3 0.0 5.1e-123 411.1 0.0 1.0 1 0 0 1 1 1 1 Amidase GATase_3 PF07685.9 gi|148643314|ref|YP_001273827.1| - 1.2e-17 63.9 0.0 2e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|148643314|ref|YP_001273827.1| - 1.3e-14 54.0 3.5 3.8e-14 52.5 2.4 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|148643314|ref|YP_001273827.1| - 1.3e-09 38.0 4.4 1e-05 25.2 0.4 2.3 2 0 0 2 2 2 2 AAA domain DJ-1_PfpI PF01965.19 gi|148643314|ref|YP_001273827.1| - 1.6e-08 34.0 0.0 1.5e-07 30.9 0.0 2.2 2 0 0 2 2 2 1 DJ-1/PfpI family SNO PF01174.14 gi|148643314|ref|YP_001273827.1| - 1.4e-06 28.0 0.0 3.2e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.23 gi|148643314|ref|YP_001273827.1| - 2.8e-06 26.9 0.0 6.4e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DUF4066 PF13278.1 gi|148643314|ref|YP_001273827.1| - 0.00016 20.9 0.0 0.00034 19.9 0.0 1.5 1 0 0 1 1 1 1 Putative amidotransferase GATase_5 PF13507.1 gi|148643314|ref|YP_001273827.1| - 0.018 13.9 0.1 0.4 9.5 0.1 2.4 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|148643314|ref|YP_001273827.1| - 0.034 13.5 0.2 0.13 11.7 0.1 1.9 1 1 0 1 1 1 0 Peptidase C26 Peptidase_S51 PF03575.12 gi|148643314|ref|YP_001273827.1| - 0.056 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Peptidase family S51 MobB PF03205.9 gi|148643314|ref|YP_001273827.1| - 0.075 12.7 0.1 1.6 8.4 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Cass2 PF14526.1 gi|148643315|ref|YP_001273828.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Integron-associated effector binding protein bPH_5 PF10882.3 gi|148643315|ref|YP_001273828.1| - 0.11 12.2 0.9 0.19 11.5 0.6 1.5 1 0 0 1 1 1 0 Bacterial PH domain DHBP_synthase PF00926.14 gi|148643316|ref|YP_001273829.1| - 3.9e-68 228.5 0.0 4.5e-68 228.3 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|148643317|ref|YP_001273830.1| - 6e-37 125.9 0.1 6.7e-37 125.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 DUF1905 PF08922.6 gi|148643317|ref|YP_001273830.1| - 0.014 14.9 0.0 0.024 14.2 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1905) FAD_binding_2 PF00890.19 gi|148643318|ref|YP_001273831.1| - 1.1e-97 327.5 1.4 1.4e-97 327.2 1.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|148643318|ref|YP_001273831.1| - 6e-29 100.5 0.9 1.3e-28 99.4 0.6 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|148643318|ref|YP_001273831.1| - 3e-11 43.6 0.0 2.7e-09 37.2 0.0 3.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|148643318|ref|YP_001273831.1| - 0.0013 17.7 0.3 0.016 14.1 0.1 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|148643318|ref|YP_001273831.1| - 0.0032 16.3 4.8 0.054 12.3 0.5 3.1 3 0 0 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|148643318|ref|YP_001273831.1| - 0.0041 16.2 5.0 0.018 14.1 0.4 3.0 3 0 0 3 3 3 1 Thi4 family V-SNARE PF05008.10 gi|148643318|ref|YP_001273831.1| - 0.012 15.7 1.4 0.033 14.3 1.0 1.7 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus FAD_binding_3 PF01494.14 gi|148643318|ref|YP_001273831.1| - 0.016 14.2 0.4 0.028 13.5 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain FAD_oxidored PF12831.2 gi|148643318|ref|YP_001273831.1| - 0.12 11.4 0.2 0.27 10.2 0.1 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase DUF1947 PF09183.5 gi|148643318|ref|YP_001273831.1| - 0.16 11.7 0.9 0.67 9.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1947) HI0933_like PF03486.9 gi|148643318|ref|YP_001273831.1| - 0.38 9.1 10.4 0.58 8.5 0.6 3.6 3 1 1 4 4 4 0 HI0933-like protein Amidohydro_1 PF01979.15 gi|148643319|ref|YP_001273832.1| - 3.2e-58 197.9 0.1 4.1e-58 197.6 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|148643319|ref|YP_001273832.1| - 5.5e-17 62.0 0.0 5.7e-14 52.1 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|148643319|ref|YP_001273832.1| - 1.3e-15 56.9 0.0 4.4e-15 55.2 0.0 2.0 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|148643319|ref|YP_001273832.1| - 4.4e-14 53.1 0.0 4.7e-08 33.3 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase LAGLIDADG_3 PF14528.1 gi|148643319|ref|YP_001273832.1| - 0.089 13.0 0.0 0.55 10.5 0.0 2.3 3 0 0 3 3 3 0 LAGLIDADG-like domain CBFD_NFYB_HMF PF00808.18 gi|148643320|ref|YP_001273833.1| - 5.1e-19 68.0 3.1 5.6e-19 67.9 2.1 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|148643320|ref|YP_001273833.1| - 2.1e-14 53.3 0.2 2.2e-14 53.2 0.2 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.12 gi|148643320|ref|YP_001273833.1| - 4.1e-05 23.4 0.9 4.4e-05 23.3 0.6 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.1 gi|148643320|ref|YP_001273833.1| - 0.00081 19.5 0.0 0.0009 19.3 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S Topoisom_I PF01028.15 gi|148643320|ref|YP_001273833.1| - 0.0026 16.9 0.2 0.0027 16.8 0.1 1.0 1 0 0 1 1 1 1 Eukaryotic DNA topoisomerase I, catalytic core TFIID_20kDa PF03847.8 gi|148643320|ref|YP_001273833.1| - 0.0063 16.7 0.2 0.0069 16.6 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.11 gi|148643320|ref|YP_001273833.1| - 0.0088 15.8 0.1 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit TFIID-31kDa PF02291.10 gi|148643320|ref|YP_001273833.1| - 0.024 14.4 0.0 0.025 14.3 0.0 1.0 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit AAA_32 PF13654.1 gi|148643320|ref|YP_001273833.1| - 0.042 12.5 0.6 0.044 12.4 0.4 1.1 1 0 0 1 1 1 0 AAA domain Bromo_TP PF07524.8 gi|148643320|ref|YP_001273833.1| - 0.049 13.3 0.0 0.053 13.2 0.0 1.2 1 0 0 1 1 1 0 Bromodomain associated DUF1931 PF09123.6 gi|148643320|ref|YP_001273833.1| - 0.11 12.4 0.9 0.11 12.3 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) VIT1 PF01988.14 gi|148643320|ref|YP_001273833.1| - 0.19 11.1 0.6 0.21 11.0 0.4 1.0 1 0 0 1 1 1 0 VIT family HisG PF01634.13 gi|148643321|ref|YP_001273834.1| - 3.3e-55 186.1 2.8 5.7e-55 185.3 1.7 1.5 2 0 0 2 2 2 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|148643321|ref|YP_001273834.1| - 2.3e-26 91.5 2.4 3.6e-26 90.8 1.2 1.8 2 0 0 2 2 2 1 HisG, C-terminal domain DUF881 PF05949.7 gi|148643321|ref|YP_001273834.1| - 0.0031 16.9 1.2 0.0056 16.1 0.3 1.8 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF881) Flavodoxin_5 PF12724.2 gi|148643322|ref|YP_001273835.1| - 2.5e-18 66.4 0.1 3.1e-18 66.1 0.1 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|148643322|ref|YP_001273835.1| - 2.3e-08 33.6 0.4 3.7e-08 32.9 0.3 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|148643322|ref|YP_001273835.1| - 0.0057 16.6 0.0 0.013 15.5 0.0 1.6 1 1 0 2 2 2 1 Flavodoxin PIG-X PF08320.7 gi|148643322|ref|YP_001273835.1| - 0.12 11.5 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 PIG-X / PBN1 FMN_red PF03358.10 gi|148643322|ref|YP_001273835.1| - 0.15 11.5 0.1 6.1 6.3 0.0 2.1 1 1 1 2 2 2 0 NADPH-dependent FMN reductase OTCace_N PF02729.16 gi|148643323|ref|YP_001273836.1| - 1.8e-45 154.0 0.0 2.9e-45 153.3 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|148643323|ref|YP_001273836.1| - 1.6e-34 119.0 0.0 2.2e-34 118.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Shikimate_DH PF01488.15 gi|148643323|ref|YP_001273836.1| - 0.089 12.8 0.1 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Cdc6_C PF09079.6 gi|148643324|ref|YP_001273837.1| - 9.3e-22 76.5 1.8 1.1e-21 76.3 0.2 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|148643324|ref|YP_001273837.1| - 1.1e-11 45.0 0.1 2.6e-11 43.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|148643324|ref|YP_001273837.1| - 1.8e-08 34.5 0.0 9.5e-08 32.2 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|148643324|ref|YP_001273837.1| - 4e-06 27.0 0.0 8.6e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DEAD PF00270.24 gi|148643324|ref|YP_001273837.1| - 0.002 17.6 1.0 0.38 10.2 0.1 2.5 1 1 0 2 2 2 1 DEAD/DEAH box helicase Arch_ATPase PF01637.13 gi|148643324|ref|YP_001273837.1| - 0.0032 17.2 0.5 0.0056 16.3 0.1 1.5 2 0 0 2 2 2 1 Archaeal ATPase NB-ARC PF00931.17 gi|148643324|ref|YP_001273837.1| - 0.0035 16.2 0.1 0.0052 15.6 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain KAP_NTPase PF07693.9 gi|148643324|ref|YP_001273837.1| - 0.005 15.8 1.9 0.041 12.8 0.0 2.3 2 1 0 3 3 3 1 KAP family P-loop domain AAA_18 PF13238.1 gi|148643324|ref|YP_001273837.1| - 0.0056 16.9 0.8 0.017 15.4 0.0 2.2 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|148643324|ref|YP_001273837.1| - 0.01 15.4 0.0 0.029 14.0 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.9 gi|148643324|ref|YP_001273837.1| - 0.012 15.3 0.0 0.03 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|148643324|ref|YP_001273837.1| - 0.019 14.4 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.1 gi|148643324|ref|YP_001273837.1| - 0.019 15.7 0.5 0.061 14.1 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|148643324|ref|YP_001273837.1| - 0.031 13.8 0.0 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|148643324|ref|YP_001273837.1| - 0.038 13.1 0.3 0.48 9.4 0.0 2.2 2 0 0 2 2 2 0 KaiC TrwB_AAD_bind PF10412.4 gi|148643324|ref|YP_001273837.1| - 0.077 11.6 0.0 5 5.6 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.2 gi|148643324|ref|YP_001273837.1| - 0.085 12.2 0.4 0.4 10.0 0.3 2.2 1 1 0 1 1 1 0 AAA-like domain DUF2299 PF10061.4 gi|148643325|ref|YP_001273838.1| - 2.6e-46 156.5 0.8 3.1e-46 156.2 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) DUF2480 PF10652.4 gi|148643325|ref|YP_001273838.1| - 0.03 13.8 1.0 2.3 7.7 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2480) CobD_Cbib PF03186.8 gi|148643326|ref|YP_001273839.1| - 4.7e-84 281.9 0.0 7.1e-84 281.3 0.0 1.2 1 0 0 1 1 1 1 CobD/Cbib protein Dispanin PF04505.7 gi|148643326|ref|YP_001273839.1| - 0.19 11.2 1.8 0.41 10.2 0.0 2.4 2 0 0 2 2 2 0 Interferon-induced transmembrane protein CbiG_C PF01890.11 gi|148643327|ref|YP_001273840.1| - 2.2e-33 115.0 0.1 1.6e-32 112.3 0.0 2.0 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus CbiG_N PF11760.3 gi|148643327|ref|YP_001273840.1| - 6.8e-31 105.8 0.2 1.3e-30 104.9 0.2 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_mid PF11761.3 gi|148643327|ref|YP_001273840.1| - 0.0012 19.0 0.0 0.0023 18.1 0.0 1.5 1 0 0 1 1 1 1 Cobalamin biosynthesis central region UPF0147 PF03685.8 gi|148643328|ref|YP_001273841.1| - 1.9e-29 101.3 3.7 2.1e-29 101.2 2.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|148643328|ref|YP_001273841.1| - 0.014 15.5 0.2 1.7 8.8 0.0 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0253) DUF904 PF06005.7 gi|148643328|ref|YP_001273841.1| - 0.024 14.9 2.2 0.031 14.5 0.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Sec8_exocyst PF04048.9 gi|148643328|ref|YP_001273841.1| - 0.06 12.9 1.1 0.096 12.3 0.8 1.4 1 1 0 1 1 1 0 Sec8 exocyst complex component specific domain NPH3 PF03000.9 gi|148643328|ref|YP_001273841.1| - 0.065 12.7 0.2 0.077 12.5 0.2 1.0 1 0 0 1 1 1 0 NPH3 family Xpo1 PF08389.7 gi|148643328|ref|YP_001273841.1| - 0.14 12.0 0.9 0.17 11.7 0.6 1.2 1 0 0 1 1 1 0 Exportin 1-like protein RHH_1 PF01402.16 gi|148643329|ref|YP_001273842.1| - 0.00036 20.2 0.0 0.00058 19.6 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ADP_PFK_GK PF04587.10 gi|148643329|ref|YP_001273842.1| - 0.059 11.5 0.1 0.064 11.4 0.1 1.0 1 0 0 1 1 1 0 ADP-specific Phosphofructokinase/Glucokinase conserved region Aldolase_II PF00596.16 gi|148643330|ref|YP_001273843.1| - 3.6e-41 140.7 0.0 4.1e-41 140.6 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain DNA_pol_E_B PF04042.11 gi|148643331|ref|YP_001273844.1| - 4.9e-18 65.1 0.0 1e-16 60.8 0.0 2.1 2 0 0 2 2 2 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|148643331|ref|YP_001273844.1| - 1.1e-10 41.6 0.1 2.2e-10 40.6 0.1 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|148643331|ref|YP_001273844.1| - 2.9e-08 33.3 0.5 5.4e-08 32.4 0.4 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|148643331|ref|YP_001273844.1| - 0.0077 16.0 0.0 0.019 14.7 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain MGC-24 PF05283.6 gi|148643331|ref|YP_001273844.1| - 9 6.0 6.6 15 5.3 4.6 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) zf-like PF04071.7 gi|148643333|ref|YP_001273846.1| - 5.1e-29 99.8 9.4 9.4e-29 98.9 6.5 1.4 1 0 0 1 1 1 1 Cysteine-rich small domain TP_methylase PF00590.15 gi|148643333|ref|YP_001273846.1| - 2e-26 93.0 0.0 3.2e-26 92.3 0.0 1.4 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases FlaC_arch PF05377.6 gi|148643333|ref|YP_001273846.1| - 0.37 10.7 2.2 1.9 8.4 0.1 2.9 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) TrkA_C PF02080.16 gi|148643334|ref|YP_001273847.1| - 2.8e-14 52.4 0.1 4.5e-14 51.7 0.1 1.3 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.14 gi|148643334|ref|YP_001273847.1| - 6.3e-08 32.9 6.6 6.3e-08 32.9 4.6 1.7 2 0 0 2 2 2 1 PhoU domain PhoU_div PF01865.11 gi|148643334|ref|YP_001273847.1| - 0.28 10.3 5.0 0.12 11.5 1.6 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF47 MgtE PF01769.11 gi|148643335|ref|YP_001273848.1| - 8.8e-37 126.4 26.5 1.9e-24 86.4 5.2 2.8 2 1 1 3 3 3 2 Divalent cation transporter Rep_Org_C PF06926.6 gi|148643336|ref|YP_001273849.1| - 0.24 11.5 3.3 0.19 11.8 0.3 2.2 2 1 0 2 2 2 0 Putative replisome organiser protein C-terminus ABC2_membrane_3 PF12698.2 gi|148643337|ref|YP_001273850.1| - 0.00057 19.0 1.7 0.00075 18.6 1.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein AAA_14 PF13173.1 gi|148643338|ref|YP_001273851.1| - 3.4e-36 123.9 0.9 3.4e-36 123.9 0.6 2.6 2 1 1 3 3 3 1 AAA domain Arch_ATPase PF01637.13 gi|148643338|ref|YP_001273851.1| - 6.8e-08 32.4 3.3 6.8e-08 32.4 2.3 3.6 3 1 1 4 4 4 1 Archaeal ATPase DUF4143 PF13635.1 gi|148643338|ref|YP_001273851.1| - 2.4e-06 27.6 3.5 2.5e-06 27.5 0.9 2.1 2 2 0 2 2 2 1 Domain of unknown function (DUF4143) NACHT PF05729.7 gi|148643338|ref|YP_001273851.1| - 0.0016 18.1 0.0 0.005 16.5 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA PF00004.24 gi|148643338|ref|YP_001273851.1| - 0.023 14.8 0.0 0.11 12.7 0.0 2.1 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|148643338|ref|YP_001273851.1| - 0.024 14.5 0.0 0.12 12.3 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|148643338|ref|YP_001273851.1| - 0.035 13.5 0.1 0.95 8.8 0.1 2.4 1 1 0 1 1 1 0 AAA-like domain Viral_helicase1 PF01443.13 gi|148643338|ref|YP_001273851.1| - 0.035 13.6 0.0 0.072 12.6 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.1 gi|148643338|ref|YP_001273851.1| - 0.061 13.4 0.0 0.31 11.1 0.0 2.1 1 1 1 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|148643338|ref|YP_001273851.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF35 PF01796.12 gi|148643339|ref|YP_001273852.1| - 6.9e-21 74.2 0.0 9.5e-21 73.8 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|148643339|ref|YP_001273852.1| - 2.3e-09 36.8 0.5 3.6e-09 36.2 0.4 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.1 gi|148643339|ref|YP_001273852.1| - 0.011 15.4 1.6 0.43 10.3 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|148643339|ref|YP_001273852.1| - 0.014 14.9 1.7 0.53 9.9 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|148643339|ref|YP_001273852.1| - 0.015 15.0 0.4 0.18 11.6 0.3 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|148643339|ref|YP_001273852.1| - 0.024 14.3 0.3 0.042 13.5 0.2 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|148643339|ref|YP_001273852.1| - 0.026 14.3 0.6 0.045 13.5 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon Runt PF00853.14 gi|148643339|ref|YP_001273852.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.3 1 1 0 1 1 1 0 Runt domain Zn_Tnp_IS1595 PF12760.2 gi|148643339|ref|YP_001273852.1| - 0.12 12.2 0.1 0.12 12.2 0.1 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-HIT PF04438.11 gi|148643339|ref|YP_001273852.1| - 0.26 10.9 3.0 0.41 10.3 2.0 1.3 1 0 0 1 1 1 0 HIT zinc finger zf-C2HC_2 PF13913.1 gi|148643339|ref|YP_001273852.1| - 0.98 9.1 8.3 0.68 9.6 0.3 2.3 1 1 1 2 2 2 0 zinc-finger of a C2HC-type RRN7 PF11781.3 gi|148643339|ref|YP_001273852.1| - 1.3 8.5 3.5 3.8 7.0 0.1 2.4 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 CbiX PF01903.12 gi|148643340|ref|YP_001273853.1| - 5.5e-41 138.9 0.1 8.5e-21 74.0 0.2 2.2 2 0 0 2 2 2 2 CbiX CbiK PF06180.6 gi|148643340|ref|YP_001273853.1| - 2.1e-06 27.0 0.0 0.022 13.8 0.0 2.2 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Zip PF02535.17 gi|148643340|ref|YP_001273853.1| - 0.008 15.2 1.5 0.0099 14.9 1.1 1.2 1 0 0 1 1 1 1 ZIP Zinc transporter Ferrochelatase PF00762.14 gi|148643340|ref|YP_001273853.1| - 0.054 12.4 0.0 2.1 7.2 0.0 2.9 2 2 1 3 3 3 0 Ferrochelatase BAF1_ABF1 PF04684.8 gi|148643340|ref|YP_001273853.1| - 6.9 5.4 12.1 9.6 4.9 8.4 1.1 1 0 0 1 1 1 0 BAF1 / ABF1 chromatin reorganising factor CbiX PF01903.12 gi|148643341|ref|YP_001273854.1| - 4.5e-24 84.5 0.7 9.5e-24 83.5 0.5 1.5 1 1 0 1 1 1 1 CbiX Zip PF02535.17 gi|148643341|ref|YP_001273854.1| - 0.003 16.6 3.8 0.0031 16.5 2.7 1.1 1 0 0 1 1 1 1 ZIP Zinc transporter CbiK PF06180.6 gi|148643341|ref|YP_001273854.1| - 0.024 13.7 0.0 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) SelP_N PF04592.9 gi|148643341|ref|YP_001273854.1| - 2.3 7.5 14.7 3.4 6.9 10.2 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region DUF4399 PF14347.1 gi|148643342|ref|YP_001273855.1| - 7e-44 147.7 1.8 2.3e-13 49.9 0.1 5.2 2 1 3 5 5 5 4 Domain of unknown function (DUF4399) Big_1 PF02369.11 gi|148643342|ref|YP_001273855.1| - 2.5e-11 43.3 37.1 0.00098 18.9 1.0 6.1 3 2 3 6 6 6 5 Bacterial Ig-like domain (group 1) AbfB PF05270.8 gi|148643342|ref|YP_001273855.1| - 0.037 13.7 0.3 2 8.1 0.1 3.0 1 1 2 3 3 3 0 Alpha-L-arabinofuranosidase B (ABFB) Lsr2 PF11774.3 gi|148643342|ref|YP_001273855.1| - 0.048 13.5 0.4 13 5.7 0.0 3.7 4 0 0 4 4 4 0 Lsr2 NT-C2 PF10358.4 gi|148643342|ref|YP_001273855.1| - 0.98 8.9 5.6 12 5.4 0.0 3.9 3 2 2 5 5 5 0 N-terminal C2 in EEIG1 and EHBP1 proteins AIRS PF00586.19 gi|148643343|ref|YP_001273856.1| - 9e-22 77.1 0.2 6.2e-21 74.4 0.0 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|148643343|ref|YP_001273856.1| - 1.9e-06 27.9 0.2 6.1e-06 26.3 0.1 1.9 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain DeoC PF01791.4 gi|148643343|ref|YP_001273856.1| - 0.034 13.4 0.0 0.65 9.2 0.0 2.1 2 0 0 2 2 2 0 DeoC/LacD family aldolase DUF2357 PF09823.4 gi|148643343|ref|YP_001273856.1| - 0.066 12.2 0.1 0.12 11.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2357) Radical_SAM PF04055.16 gi|148643344|ref|YP_001273857.1| - 6.2e-15 55.7 0.0 1.1e-14 54.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily zf-ribbon_3 PF13248.1 gi|148643344|ref|YP_001273857.1| - 0.0023 17.1 1.0 0.0023 17.1 0.7 2.8 3 1 0 3 3 3 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148643344|ref|YP_001273857.1| - 0.013 14.9 3.1 0.013 14.9 2.1 3.3 3 1 1 4 4 4 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|148643344|ref|YP_001273857.1| - 0.021 14.4 1.7 0.021 14.4 1.2 2.7 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.5 gi|148643344|ref|YP_001273857.1| - 0.44 10.5 6.3 0.16 11.9 0.9 2.7 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|148643344|ref|YP_001273857.1| - 4.1 7.1 11.4 1.1 8.9 3.0 3.1 3 0 0 3 3 3 0 Putative transposase DNA-binding domain P12 PF12669.2 gi|148643345|ref|YP_001273858.1| - 1.6 8.9 8.9 16 5.7 0.2 3.9 3 0 0 3 3 3 0 Virus attachment protein p12 family S-antigen PF05756.6 gi|148643345|ref|YP_001273858.1| - 7 6.7 8.1 0.65 10.0 1.2 2.5 2 0 0 2 2 2 0 S-antigen protein UbiD PF01977.11 gi|148643346|ref|YP_001273859.1| - 2e-113 378.9 0.1 2.5e-113 378.6 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AIRC PF00731.15 gi|148643347|ref|YP_001273860.1| - 1.6e-78 261.1 0.8 1.3e-50 170.6 0.2 2.0 2 0 0 2 2 2 2 AIR carboxylase DUF3557 PF12078.3 gi|148643347|ref|YP_001273860.1| - 0.0065 16.1 0.9 0.12 12.1 0.2 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF3557) PMT_2 PF13231.1 gi|148643348|ref|YP_001273861.1| - 7.9e-08 32.3 21.0 7.9e-08 32.3 14.6 2.8 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase GtrA PF04138.9 gi|148643349|ref|YP_001273862.1| - 7.7e-23 80.6 18.7 8.9e-23 80.4 13.0 1.1 1 0 0 1 1 1 1 GtrA-like protein 5TM-5TMR_LYT PF07694.7 gi|148643349|ref|YP_001273862.1| - 0.11 11.8 7.7 0.15 11.3 5.3 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT DUF4271 PF14093.1 gi|148643349|ref|YP_001273862.1| - 0.46 10.1 24.0 0.91 9.1 16.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4271) BioY PF02632.9 gi|148643349|ref|YP_001273862.1| - 1.6 8.3 7.3 2.7 7.6 5.1 1.5 1 1 0 1 1 1 0 BioY family Glycos_transf_2 PF00535.21 gi|148643350|ref|YP_001273863.1| - 3.3e-19 69.2 0.9 4.9e-19 68.6 0.6 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643350|ref|YP_001273863.1| - 2.4e-07 30.7 0.0 3.1e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 FixQ PF05545.6 gi|148643350|ref|YP_001273863.1| - 0.0041 16.7 0.0 0.0041 16.7 0.0 2.3 2 0 0 2 2 2 1 Cbb3-type cytochrome oxidase component FixQ CofC PF01983.11 gi|148643350|ref|YP_001273863.1| - 0.022 13.7 0.4 0.043 12.7 0.1 1.5 2 0 0 2 2 2 0 Guanylyl transferase CofC like Glyco_tranf_2_4 PF13704.1 gi|148643350|ref|YP_001273863.1| - 0.024 14.9 0.1 0.046 14.0 0.1 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 DUF485 PF04341.7 gi|148643350|ref|YP_001273863.1| - 0.032 13.9 3.3 0.054 13.2 2.3 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF485 Claudin_2 PF13903.1 gi|148643350|ref|YP_001273863.1| - 0.035 13.8 0.1 0.051 13.2 0.1 1.3 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Wzy_C PF04932.10 gi|148643350|ref|YP_001273863.1| - 0.42 10.3 8.7 6.7 6.4 5.3 2.6 1 1 1 2 2 2 0 O-Antigen ligase PepSY_TM_2 PF13703.1 gi|148643350|ref|YP_001273863.1| - 6.5 6.9 8.3 0.76 9.9 1.6 2.2 1 1 1 2 2 2 0 PepSY-associated TM helix DUF2142 PF09913.4 gi|148643351|ref|YP_001273864.1| - 1.5e-87 293.8 21.0 1.5e-87 293.8 14.5 2.5 2 1 1 3 3 3 1 Predicted membrane protein (DUF2142) MerC PF03203.9 gi|148643351|ref|YP_001273864.1| - 0.19 12.0 0.1 0.19 12.0 0.1 4.2 3 2 1 4 4 4 0 MerC mercury resistance protein Tex_N PF09371.5 gi|148643352|ref|YP_001273865.1| - 3e-68 228.9 8.0 3e-68 228.9 5.5 1.7 2 0 0 2 2 2 1 Tex-like protein N-terminal domain HHH_3 PF12836.2 gi|148643352|ref|YP_001273865.1| - 6.1e-28 96.5 0.4 2e-27 94.9 0.3 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif S1 PF00575.18 gi|148643352|ref|YP_001273865.1| - 3.6e-21 75.0 1.2 1.2e-20 73.3 0.9 2.0 1 0 0 1 1 1 1 S1 RNA binding domain HHH_7 PF14635.1 gi|148643352|ref|YP_001273865.1| - 5.9e-12 45.6 1.3 1.4e-11 44.3 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif YqgF PF14639.1 gi|148643352|ref|YP_001273865.1| - 9.4e-09 34.9 0.2 4e-08 32.9 0.1 2.1 1 0 0 1 1 1 1 Holliday-junction resolvase-like of SPT6 HHH_6 PF14579.1 gi|148643352|ref|YP_001273865.1| - 0.0064 16.5 0.0 0.047 13.7 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif T2SK PF03934.8 gi|148643352|ref|YP_001273865.1| - 0.008 15.3 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein K GA PF01468.12 gi|148643352|ref|YP_001273865.1| - 0.012 15.7 0.6 0.041 14.0 0.1 2.2 2 0 0 2 2 2 0 GA module DLD PF14878.1 gi|148643352|ref|YP_001273865.1| - 0.039 14.0 2.8 1.3 9.1 0.1 3.4 2 1 0 2 2 2 0 Death-like domain of SPT6 Ribosomal_L19 PF01245.15 gi|148643352|ref|YP_001273865.1| - 1.6 8.5 7.2 3.4 7.4 0.0 3.6 4 0 0 4 4 4 0 Ribosomal protein L19 Nitroreductase PF00881.19 gi|148643353|ref|YP_001273866.1| - 5.8e-28 97.7 0.0 8.2e-28 97.2 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Glycos_transf_2 PF00535.21 gi|148643354|ref|YP_001273867.1| - 4.8e-24 84.9 0.1 8.5e-24 84.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643354|ref|YP_001273867.1| - 2e-07 31.0 0.2 3.1e-07 30.4 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|148643354|ref|YP_001273867.1| - 3.2e-07 29.7 0.6 5.1e-07 29.0 0.4 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|148643354|ref|YP_001273867.1| - 0.079 13.2 0.0 0.22 11.8 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferase family 2 SdpI PF13630.1 gi|148643354|ref|YP_001273867.1| - 6.4 6.5 14.9 0.46 10.2 4.4 2.3 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF2976 PF11190.3 gi|148643354|ref|YP_001273867.1| - 6.8 6.2 12.5 1.9 8.0 5.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) DUF1743 PF08489.6 gi|148643355|ref|YP_001273868.1| - 3.4e-28 97.7 0.1 1.4e-26 92.5 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) DUF2220 PF09983.4 gi|148643355|ref|YP_001273868.1| - 0.05 12.7 0.0 0.082 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria C-term(DUF2220) IF3_N PF05198.11 gi|148643355|ref|YP_001273868.1| - 0.067 13.1 0.1 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain DMRL_synthase PF00885.14 gi|148643356|ref|YP_001273869.1| - 3.4e-38 130.5 0.7 3.7e-38 130.4 0.5 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Glycos_transf_2 PF00535.21 gi|148643357|ref|YP_001273870.1| - 1.2e-27 96.6 1.1 1.2e-27 96.6 0.7 2.2 3 0 0 3 3 3 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643357|ref|YP_001273870.1| - 1.8e-10 40.9 0.0 3.3e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Iso_dh PF00180.15 gi|148643358|ref|YP_001273871.1| - 2e-106 355.8 0.6 2.4e-106 355.6 0.4 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF1447 PF07288.6 gi|148643358|ref|YP_001273871.1| - 0.087 12.6 0.7 0.26 11.1 0.5 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1447) Antirestrict PF03230.8 gi|148643358|ref|YP_001273871.1| - 0.12 12.4 0.0 0.32 10.9 0.0 1.7 1 0 0 1 1 1 0 Antirestriction protein Aconitase_C PF00694.14 gi|148643359|ref|YP_001273872.1| - 1.7e-20 73.4 0.0 2.4e-20 72.9 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|148643359|ref|YP_001273872.1| - 9.4e-05 21.9 0.1 0.0021 17.5 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Aconitase PF00330.15 gi|148643360|ref|YP_001273873.1| - 4.8e-87 292.3 4.9 2.7e-57 194.3 1.4 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|148643360|ref|YP_001273873.1| - 0.003 16.1 0.0 0.0047 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) EII-GUT PF03608.8 gi|148643360|ref|YP_001273873.1| - 0.036 13.9 0.0 0.079 12.7 0.0 1.5 2 0 0 2 2 2 0 PTS system enzyme II sorbitol-specific factor SPASM PF13186.1 gi|148643361|ref|YP_001273874.1| - 1.6e-14 53.9 5.1 8.7e-14 51.6 1.0 2.7 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.16 gi|148643361|ref|YP_001273874.1| - 3.7e-11 43.4 0.0 6.5e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|148643361|ref|YP_001273874.1| - 1.8e-09 37.8 2.7 1.4e-08 34.9 0.1 2.6 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|148643361|ref|YP_001273874.1| - 2.2e-06 27.6 2.6 3.9e-06 26.8 0.0 2.5 3 0 0 3 3 3 1 4Fe-4S single cluster domain DUF1284 PF06935.6 gi|148643361|ref|YP_001273874.1| - 0.93 9.7 12.1 4 7.6 0.3 3.8 3 1 1 4 4 4 0 Protein of unknown function (DUF1284) DUF2264 PF10022.4 gi|148643362|ref|YP_001273875.1| - 4.6e-106 354.4 0.0 5.6e-106 354.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2264) UDPG_MGDP_dh_N PF03721.9 gi|148643363|ref|YP_001273876.1| - 1.8e-54 183.9 1.8 2.8e-54 183.3 0.8 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|148643363|ref|YP_001273876.1| - 1.8e-28 98.5 0.3 2.1e-27 95.1 0.0 2.6 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|148643363|ref|YP_001273876.1| - 3.2e-26 91.5 2.1 4.1e-26 91.2 0.3 2.1 3 0 0 3 3 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|148643363|ref|YP_001273876.1| - 2.3e-05 24.1 0.3 0.00094 18.9 0.0 2.8 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|148643363|ref|YP_001273876.1| - 4e-05 23.0 0.7 0.0002 20.8 0.1 2.5 3 1 0 3 3 3 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|148643363|ref|YP_001273876.1| - 4.2e-05 23.4 0.0 0.00011 22.0 0.0 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|148643363|ref|YP_001273876.1| - 0.00094 19.1 2.2 0.0033 17.4 0.1 2.7 2 2 0 2 2 2 1 TrkA-N domain 3HCDH_N PF02737.13 gi|148643363|ref|YP_001273876.1| - 0.0014 18.2 0.0 0.003 17.2 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|148643363|ref|YP_001273876.1| - 0.0017 18.7 0.7 0.0055 17.0 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|148643363|ref|YP_001273876.1| - 0.028 13.5 0.5 0.11 11.6 0.1 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_31 PF13847.1 gi|148643363|ref|YP_001273876.1| - 0.031 13.8 0.0 0.2 11.2 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain PAN_3 PF08277.7 gi|148643363|ref|YP_001273876.1| - 0.037 13.6 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 PAN-like domain AlaDh_PNT_C PF01262.16 gi|148643363|ref|YP_001273876.1| - 0.066 12.7 0.1 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Spindle_Spc25 PF08234.7 gi|148643363|ref|YP_001273876.1| - 0.12 12.3 0.1 0.5 10.4 0.0 2.0 2 0 0 2 2 2 0 Chromosome segregation protein Spc25 OrfB_IS605 PF01385.14 gi|148643363|ref|YP_001273876.1| - 0.14 11.5 0.1 0.31 10.4 0.0 1.6 2 0 0 2 2 2 0 Probable transposase RmlD_sub_bind PF04321.12 gi|148643364|ref|YP_001273877.1| - 6.9e-102 340.1 0.0 7.6e-102 340.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|148643364|ref|YP_001273877.1| - 9e-22 77.6 0.0 1.2e-21 77.2 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|148643364|ref|YP_001273877.1| - 1.1e-08 34.3 0.1 3.3e-07 29.4 0.0 2.8 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|148643364|ref|YP_001273877.1| - 1.3e-08 34.1 0.0 1.2e-07 30.8 0.0 2.1 1 1 1 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.14 gi|148643364|ref|YP_001273877.1| - 0.00027 19.7 0.2 0.00057 18.6 0.0 1.6 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family Semialdhyde_dh PF01118.19 gi|148643364|ref|YP_001273877.1| - 0.15 12.3 0.0 0.28 11.5 0.0 1.5 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF4399 PF14347.1 gi|148643365|ref|YP_001273878.1| - 9.6e-35 118.4 15.8 3.2e-08 33.4 0.1 10.3 8 1 2 10 10 10 7 Domain of unknown function (DUF4399) CarboxypepD_reg PF13620.1 gi|148643365|ref|YP_001273878.1| - 7.5e-14 51.5 34.9 0.00011 22.1 0.7 11.3 8 1 3 11 11 11 4 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|148643365|ref|YP_001273878.1| - 2.2e-10 40.3 81.5 0.0038 17.1 0.2 13.9 12 4 3 15 15 15 7 Bacterial Ig-like domain (group 1) PEGA PF08308.6 gi|148643365|ref|YP_001273878.1| - 0.00026 20.6 13.5 0.25 11.1 0.1 6.8 5 0 0 5 5 5 3 PEGA domain YtkA PF13115.1 gi|148643365|ref|YP_001273878.1| - 0.0027 18.0 15.4 0.056 13.8 0.0 7.1 9 0 0 9 9 9 1 YtkA-like DUF4399 PF14347.1 gi|148643366|ref|YP_001273879.1| - 4.9e-19 68.1 0.1 3.2e-05 23.8 0.0 5.4 4 1 1 5 5 5 3 Domain of unknown function (DUF4399) Big_1 PF02369.11 gi|148643366|ref|YP_001273879.1| - 1.8e-07 30.9 4.3 6.3e-05 22.8 0.7 7.3 5 1 2 7 7 7 3 Bacterial Ig-like domain (group 1) Lsr2 PF11774.3 gi|148643366|ref|YP_001273879.1| - 0.0049 16.7 0.2 1.7 8.6 0.0 3.5 4 0 0 4 4 4 1 Lsr2 PQQ PF01011.16 gi|148643366|ref|YP_001273879.1| - 0.089 12.3 12.1 21 4.8 0.0 7.0 7 1 0 7 7 7 0 PQQ enzyme repeat NTP_transferase PF00483.18 gi|148643367|ref|YP_001273880.1| - 7.3e-68 228.5 0.0 9e-68 228.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|148643367|ref|YP_001273880.1| - 6.9e-08 32.7 0.0 8.5e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|148643367|ref|YP_001273880.1| - 0.011 15.3 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase dTDP_sugar_isom PF00908.12 gi|148643368|ref|YP_001273881.1| - 1.6e-70 236.0 0.0 1.8e-70 235.8 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Epimerase PF01370.16 gi|148643369|ref|YP_001273882.1| - 7.7e-70 234.9 0.0 1e-69 234.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|148643369|ref|YP_001273882.1| - 6e-21 74.3 0.0 8.3e-21 73.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|148643369|ref|YP_001273882.1| - 1.7e-20 73.1 0.0 2.2e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|148643369|ref|YP_001273882.1| - 4.6e-16 58.5 0.0 7.4e-16 57.9 0.0 1.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|148643369|ref|YP_001273882.1| - 1.1e-15 57.2 0.0 3.3e-14 52.4 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|148643369|ref|YP_001273882.1| - 9.6e-07 28.9 0.0 1.8e-06 28.1 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|148643369|ref|YP_001273882.1| - 1.7e-06 27.5 0.0 2.5e-06 26.9 0.0 1.4 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|148643369|ref|YP_001273882.1| - 0.012 15.5 0.0 0.029 14.2 0.0 1.7 2 0 0 2 2 2 0 short chain dehydrogenase DUF4116 PF13475.1 gi|148643369|ref|YP_001273882.1| - 0.082 12.4 1.2 3.6 7.1 0.0 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4116) Ldh_1_N PF00056.18 gi|148643369|ref|YP_001273882.1| - 0.093 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Epimerase_Csub PF13950.1 gi|148643369|ref|YP_001273882.1| - 0.1 12.5 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit Glycos_transf_2 PF00535.21 gi|148643370|ref|YP_001273883.1| - 5.1e-42 143.4 0.7 1e-41 142.4 0.5 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643370|ref|YP_001273883.1| - 9.3e-15 55.0 0.0 1.6e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|148643370|ref|YP_001273883.1| - 1.6e-12 47.0 0.3 3.2e-12 46.1 0.2 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|148643370|ref|YP_001273883.1| - 0.0012 19.1 0.0 0.0029 17.8 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 bZIP_1 PF00170.16 gi|148643370|ref|YP_001273883.1| - 0.078 12.9 0.6 0.34 10.8 0.2 2.2 2 0 0 2 2 2 0 bZIP transcription factor Glycos_transf_2 PF00535.21 gi|148643371|ref|YP_001273884.1| - 1.3e-35 122.5 1.9 2.7e-35 121.5 1.3 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|148643371|ref|YP_001273884.1| - 1.8e-14 53.5 2.4 3.7e-14 52.4 1.7 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|148643371|ref|YP_001273884.1| - 1e-12 48.3 0.0 1.6e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|148643371|ref|YP_001273884.1| - 4e-06 27.0 0.0 1.3e-05 25.4 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_2 PF00535.21 gi|148643372|ref|YP_001273885.1| - 9.8e-22 77.4 0.1 2.1e-21 76.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|148643372|ref|YP_001273885.1| - 2.7e-12 46.3 1.4 1.5e-11 43.9 0.7 2.2 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|148643372|ref|YP_001273885.1| - 3e-08 33.7 0.0 4.7e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|148643372|ref|YP_001273885.1| - 7.3e-05 22.0 0.8 0.00061 19.0 0.5 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_trans_2_3 PF13632.1 gi|148643372|ref|YP_001273885.1| - 0.0027 17.4 0.0 0.0046 16.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Lipid_DES PF08557.5 gi|148643372|ref|YP_001273885.1| - 0.029 13.6 0.5 27 4.1 0.0 3.3 3 0 0 3 3 3 0 Sphingolipid Delta4-desaturase (DES) Glyco_transf_7C PF02709.9 gi|148643372|ref|YP_001273885.1| - 0.038 13.4 0.0 0.12 11.8 0.0 1.9 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase DUF616 PF04765.8 gi|148643373|ref|YP_001273886.1| - 5.7e-16 58.5 3.4 1.5e-14 53.8 2.3 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF616) Glyco_trans_1_2 PF13524.1 gi|148643373|ref|YP_001273886.1| - 1.9e-13 50.4 0.0 6.2e-13 48.8 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|148643373|ref|YP_001273886.1| - 6e-13 49.1 0.0 1.5e-12 47.8 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|148643373|ref|YP_001273886.1| - 9.7e-08 31.6 0.1 4.5e-07 29.4 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF556 PF04476.8 gi|148643373|ref|YP_001273886.1| - 0.011 14.9 0.0 0.023 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF556) Adhesin_P1 PF03257.8 gi|148643374|ref|YP_001273887.1| - 0.13 12.6 0.3 0.13 12.5 0.2 1.1 1 0 0 1 1 1 0 Mycoplasma adhesin P1 HATPase_c_4 PF13749.1 gi|148643375|ref|YP_001273888.1| - 1.2e-24 85.9 0.0 2e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal HTH_11 PF08279.7 gi|148643375|ref|YP_001273888.1| - 5.3e-06 25.9 0.8 1.2e-05 24.8 0.5 1.6 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|148643375|ref|YP_001273888.1| - 3.1e-05 23.2 1.8 3.1e-05 23.2 1.3 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|148643375|ref|YP_001273888.1| - 3.3e-05 23.4 0.1 6.6e-05 22.5 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|148643375|ref|YP_001273888.1| - 0.00014 21.3 0.7 0.00028 20.3 0.5 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|148643375|ref|YP_001273888.1| - 0.0037 16.9 0.0 0.0073 15.9 0.0 1.5 1 0 0 1 1 1 1 MarR family Mga PF05043.8 gi|148643375|ref|YP_001273888.1| - 0.012 15.8 0.5 0.037 14.2 0.4 1.8 1 0 0 1 1 1 0 Mga helix-turn-helix domain TrmB PF01978.14 gi|148643375|ref|YP_001273888.1| - 0.013 15.2 1.6 0.034 13.8 1.2 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|148643375|ref|YP_001273888.1| - 0.019 14.5 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|148643375|ref|YP_001273888.1| - 0.022 15.0 0.1 0.054 13.8 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain GntR PF00392.16 gi|148643375|ref|YP_001273888.1| - 0.03 13.7 0.4 0.12 11.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|148643375|ref|YP_001273888.1| - 0.064 12.9 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Staphylokinase PF02821.11 gi|148643375|ref|YP_001273888.1| - 0.078 12.7 1.6 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 Staphylokinase/Streptokinase family Rhabdo_ncap_2 PF03216.8 gi|148643375|ref|YP_001273888.1| - 0.12 11.0 0.5 0.18 10.4 0.3 1.2 1 0 0 1 1 1 0 Rhabdovirus nucleoprotein Glycos_transf_2 PF00535.21 gi|148643376|ref|YP_001273889.1| - 1.1e-32 113.0 0.9 1.8e-32 112.3 0.7 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|148643376|ref|YP_001273889.1| - 3.4e-13 49.2 0.4 3.4e-13 49.2 0.3 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|148643376|ref|YP_001273889.1| - 4.2e-10 39.8 0.0 6e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|148643376|ref|YP_001273889.1| - 7.6e-05 22.9 0.0 0.00017 21.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_1_2 PF13524.1 gi|148643377|ref|YP_001273890.1| - 9.7e-12 45.0 0.0 2.2e-11 43.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|148643377|ref|YP_001273890.1| - 1.4e-10 41.4 0.0 2.5e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|148643377|ref|YP_001273890.1| - 7.6e-09 35.2 0.3 6.6e-08 32.1 0.2 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 SpoIIIAC PF06686.6 gi|148643378|ref|YP_001273891.1| - 0.51 10.1 5.8 1.1 9.0 3.3 2.0 1 1 1 2 2 2 0 Stage III sporulation protein AC/AD protein family Tetraspannin PF00335.15 gi|148643379|ref|YP_001273892.1| - 3.4 6.8 9.5 4.1 6.6 6.6 1.1 1 0 0 1 1 1 0 Tetraspanin family Neurensin PF14927.1 gi|148643379|ref|YP_001273892.1| - 5.5 6.3 5.4 1.8 7.9 0.6 2.0 1 1 1 2 2 2 0 Neurensin DUF616 PF04765.8 gi|148643380|ref|YP_001273893.1| - 5e-17 62.0 1.2 5.6e-15 55.2 0.2 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF616) Glycos_transf_2 PF00535.21 gi|148643381|ref|YP_001273894.1| - 1.8e-24 86.2 0.7 5.6e-24 84.7 0.5 1.9 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643381|ref|YP_001273894.1| - 4.2e-13 49.6 0.0 7.5e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|148643381|ref|YP_001273894.1| - 3e-06 27.0 0.0 6.3e-06 26.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.1 gi|148643381|ref|YP_001273894.1| - 5.6e-05 22.4 0.3 0.001 18.3 0.2 2.4 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_transf_7C PF02709.9 gi|148643381|ref|YP_001273894.1| - 0.0044 16.4 0.0 0.013 14.9 0.0 1.7 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glycos_transf_1 PF00534.15 gi|148643382|ref|YP_001273895.1| - 2.8e-10 39.8 0.1 9.9e-10 38.0 0.1 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|148643382|ref|YP_001273895.1| - 2.1e-06 27.8 0.0 4.4e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|148643383|ref|YP_001273896.1| - 6.2e-28 97.5 1.7 1.3e-27 96.5 1.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643383|ref|YP_001273896.1| - 8.4e-09 35.5 0.0 2.7e-08 33.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|148643383|ref|YP_001273896.1| - 8.7e-06 25.0 0.4 8.7e-06 25.0 0.3 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|148643384|ref|YP_001273897.1| - 3.5e-28 98.3 0.7 7.2e-28 97.3 0.5 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643384|ref|YP_001273897.1| - 9.8e-11 41.8 0.0 1.4e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|148643384|ref|YP_001273897.1| - 8.9e-07 28.2 0.2 1.6e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 ABC2_membrane PF01061.19 gi|148643385|ref|YP_001273898.1| - 6.6e-24 84.2 23.7 6.6e-24 84.2 16.4 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|148643385|ref|YP_001273898.1| - 0.089 11.8 41.2 0.023 13.7 22.3 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|148643386|ref|YP_001273899.1| - 3.9e-18 66.0 0.2 4.6e-17 62.6 0.1 2.4 1 1 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|148643386|ref|YP_001273899.1| - 0.0012 18.3 0.2 0.0027 17.1 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|148643386|ref|YP_001273899.1| - 0.0012 18.8 18.0 0.013 15.5 0.4 3.9 3 2 1 4 4 4 2 AAA domain AAA_15 PF13175.1 gi|148643386|ref|YP_001273899.1| - 0.016 14.2 6.3 0.12 11.4 0.2 2.8 2 2 0 3 3 3 0 AAA ATPase domain ArgK PF03308.11 gi|148643386|ref|YP_001273899.1| - 0.031 13.0 0.1 0.051 12.3 0.0 1.2 1 0 0 1 1 1 0 ArgK protein ATP-synt_ab PF00006.20 gi|148643386|ref|YP_001273899.1| - 0.046 13.2 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF258 PF03193.11 gi|148643386|ref|YP_001273899.1| - 0.056 12.6 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|148643386|ref|YP_001273899.1| - 0.085 12.0 0.2 0.31 10.2 0.1 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|148643386|ref|YP_001273899.1| - 0.1 13.4 0.7 0.49 11.2 0.1 2.5 2 0 0 2 2 1 0 AAA domain MMR_HSR1 PF01926.18 gi|148643386|ref|YP_001273899.1| - 0.1 12.5 0.4 0.25 11.3 0.3 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|148643386|ref|YP_001273899.1| - 0.15 12.4 3.1 1.4 9.2 0.0 3.2 3 1 0 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|148643386|ref|YP_001273899.1| - 0.5 10.6 9.7 0.22 11.8 1.3 2.9 2 2 0 2 2 2 0 AAA domain Glyphos_transf PF04464.9 gi|148643387|ref|YP_001273900.1| - 7.9e-81 271.6 18.5 2.7e-80 269.8 12.9 1.7 1 1 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Glycos_transf_2 PF00535.21 gi|148643388|ref|YP_001273901.1| - 3e-31 108.3 1.6 6.1e-31 107.3 1.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643388|ref|YP_001273901.1| - 1.7e-13 50.9 0.0 3.6e-13 49.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|148643388|ref|YP_001273901.1| - 2.5e-12 46.4 0.3 2.5e-12 46.4 0.2 2.1 2 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|148643388|ref|YP_001273901.1| - 5e-05 23.5 0.0 9.3e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.1 gi|148643388|ref|YP_001273901.1| - 0.029 13.6 0.2 6.2 6.0 0.1 2.5 1 1 1 2 2 2 0 Glycosyltransferase like family Glycos_transf_2 PF00535.21 gi|148643389|ref|YP_001273902.1| - 1.3e-27 96.4 0.9 2.6e-27 95.5 0.6 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|148643389|ref|YP_001273902.1| - 6.2e-11 41.8 1.8 9.6e-11 41.2 1.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|148643389|ref|YP_001273902.1| - 1.3e-10 41.4 0.0 2e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|148643389|ref|YP_001273902.1| - 1.5e-05 24.7 0.0 2.3e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.1 gi|148643389|ref|YP_001273902.1| - 0.0064 15.7 0.2 0.042 13.0 0.1 2.2 1 1 0 1 1 1 1 Glycosyltransferase like family Glycos_transf_2 PF00535.21 gi|148643390|ref|YP_001273903.1| - 2.8e-27 95.4 0.5 4.8e-27 94.6 0.3 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643390|ref|YP_001273903.1| - 2.6e-21 76.5 0.0 3.5e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|148643390|ref|YP_001273903.1| - 4.1e-12 46.1 0.0 1.2e-11 44.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|148643390|ref|YP_001273903.1| - 4.9e-10 38.9 7.2 6.5e-09 35.2 5.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|148643390|ref|YP_001273903.1| - 1.1e-09 37.9 0.0 1.8e-09 37.2 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_transf_21 PF13506.1 gi|148643390|ref|YP_001273903.1| - 0.0011 18.2 0.0 0.003 16.8 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.9 gi|148643390|ref|YP_001273903.1| - 0.052 13.0 0.5 0.14 11.6 0.3 1.8 1 1 0 1 1 1 0 N-terminal domain of galactosyltransferase Bac_transf PF02397.11 gi|148643391|ref|YP_001273904.1| - 4.2e-73 244.4 0.1 8.1e-73 243.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial sugar transferase CoA_binding_3 PF13727.1 gi|148643391|ref|YP_001273904.1| - 3.2e-25 88.9 0.0 3.2e-25 88.9 0.0 1.8 2 0 0 2 2 2 1 CoA-binding domain Peptidase_C25 PF01364.13 gi|148643391|ref|YP_001273904.1| - 0.11 11.5 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Peptidase family C25 tRNA_anti-codon PF01336.20 gi|148643392|ref|YP_001273905.1| - 7e-39 131.5 14.4 5.5e-11 42.1 0.1 7.0 7 0 0 7 7 7 6 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|148643392|ref|YP_001273905.1| - 1.3e-17 63.8 0.1 2.9e-11 43.2 0.0 5.1 5 0 0 5 5 5 2 Replication factor-A C terminal domain tRNA_anti_2 PF13742.1 gi|148643392|ref|YP_001273905.1| - 7.7e-06 25.7 0.0 1.4 8.8 0.0 4.8 5 0 0 5 5 5 2 OB-fold nucleic acid binding domain zf-ribbon_3 PF13248.1 gi|148643392|ref|YP_001273905.1| - 9.5e-05 21.4 1.9 0.00017 20.6 1.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148643392|ref|YP_001273905.1| - 0.00055 19.2 3.4 0.0014 17.8 2.4 1.8 1 0 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|148643392|ref|YP_001273905.1| - 0.0037 16.7 2.1 0.0068 15.8 1.4 1.5 1 0 0 1 1 1 1 zinc-ribbon domain HIN PF02760.10 gi|148643392|ref|YP_001273905.1| - 0.013 14.8 7.4 2.7 7.3 0.1 4.4 3 1 1 4 4 4 0 HIN-200/IF120x domain zf-dskA_traR PF01258.12 gi|148643392|ref|YP_001273905.1| - 0.023 14.4 0.3 0.12 12.1 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Psb28 PF03912.9 gi|148643392|ref|YP_001273905.1| - 0.041 13.8 0.5 11 6.0 0.0 4.2 4 1 1 5 5 5 0 Psb28 protein zinc-ribbons_6 PF07191.7 gi|148643392|ref|YP_001273905.1| - 0.071 12.9 0.5 0.13 12.1 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|148643392|ref|YP_001273905.1| - 0.15 11.9 0.3 0.28 11.0 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|148643392|ref|YP_001273905.1| - 0.18 11.5 3.4 0.089 12.5 0.8 1.6 2 0 0 2 2 1 0 Prokaryotic RING finger family 1 SH3_2 PF07653.12 gi|148643392|ref|YP_001273905.1| - 0.19 11.2 1.7 16 5.0 0.0 4.0 5 0 0 5 5 4 0 Variant SH3 domain OrfB_Zn_ribbon PF07282.6 gi|148643392|ref|YP_001273905.1| - 0.22 11.1 1.0 0.43 10.2 0.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2HC5 PF06221.8 gi|148643392|ref|YP_001273905.1| - 0.23 11.2 0.3 0.43 10.3 0.2 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type RecR PF02132.10 gi|148643392|ref|YP_001273905.1| - 4.2 6.8 4.8 1.7 8.1 1.4 1.8 2 0 0 2 2 2 0 RecR protein Rad51 PF08423.6 gi|148643393|ref|YP_001273906.1| - 2.1e-93 311.9 0.1 2.5e-93 311.7 0.0 1.0 1 0 0 1 1 1 1 Rad51 RecA PF00154.16 gi|148643393|ref|YP_001273906.1| - 4.5e-13 48.9 0.1 6.6e-13 48.4 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|148643393|ref|YP_001273906.1| - 7.5e-11 41.7 0.0 1.3e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|148643393|ref|YP_001273906.1| - 1.7e-10 40.4 0.1 2.5e-10 39.8 0.1 1.3 1 0 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|148643393|ref|YP_001273906.1| - 3e-08 33.7 1.4 1e-07 32.0 1.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|148643393|ref|YP_001273906.1| - 1.1e-06 28.4 0.4 3.5e-06 26.8 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|148643393|ref|YP_001273906.1| - 0.00017 21.4 0.0 0.00038 20.3 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus AAA_22 PF13401.1 gi|148643393|ref|YP_001273906.1| - 0.00032 20.8 0.1 0.00091 19.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain HHH PF00633.18 gi|148643393|ref|YP_001273906.1| - 0.0043 16.6 1.3 0.14 11.9 0.0 3.0 2 1 0 2 2 2 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|148643393|ref|YP_001273906.1| - 0.033 14.2 0.0 0.11 12.5 0.0 2.0 1 0 0 1 1 1 0 IMS family HHH motif Terminase_2 PF03592.11 gi|148643393|ref|YP_001273906.1| - 0.08 13.2 0.3 0.17 12.2 0.0 1.6 2 0 0 2 2 2 0 Terminase small subunit Mem_trans PF03547.13 gi|148643394|ref|YP_001273907.1| - 2.6e-44 151.0 30.4 6e-25 87.3 8.7 2.0 1 1 1 2 2 2 2 Membrane transport protein DUF1422 PF07226.6 gi|148643394|ref|YP_001273907.1| - 0.045 13.5 6.3 0.24 11.1 0.3 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1422) Fer4 PF00037.22 gi|148643396|ref|YP_001273909.1| - 5.6e-20 70.0 40.8 3.7e-06 26.3 3.6 5.0 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148643396|ref|YP_001273909.1| - 6.1e-13 48.9 41.2 1.2e-08 35.1 8.0 4.2 3 1 2 5 5 5 4 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|148643396|ref|YP_001273909.1| - 2.5e-11 43.8 3.8 9.6e-10 38.6 2.6 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_16 PF13484.1 gi|148643396|ref|YP_001273909.1| - 7.6e-11 42.6 30.0 0.003 18.2 0.4 5.1 6 0 0 6 6 4 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|148643396|ref|YP_001273909.1| - 2.6e-09 36.7 40.1 0.00011 21.9 8.1 4.6 5 0 0 5 5 5 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148643396|ref|YP_001273909.1| - 4.4e-08 33.0 30.1 0.00046 20.1 0.6 4.3 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148643396|ref|YP_001273909.1| - 4.8e-08 32.7 46.9 0.002 17.9 1.2 5.2 4 2 2 6 6 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148643396|ref|YP_001273909.1| - 5.4e-08 32.9 47.5 0.00011 22.3 10.3 4.7 4 1 1 5 5 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148643396|ref|YP_001273909.1| - 2.6e-07 30.1 44.8 0.0002 21.0 2.5 5.5 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|148643396|ref|YP_001273909.1| - 3.8e-06 26.5 11.3 4e-05 23.3 1.1 5.7 6 0 0 6 6 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|148643396|ref|YP_001273909.1| - 1.5e-05 25.2 36.6 0.02 15.2 0.4 5.3 3 2 2 6 6 6 5 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|148643396|ref|YP_001273909.1| - 1.7e-05 25.1 0.5 0.0016 18.8 0.4 3.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_15 PF13459.1 gi|148643396|ref|YP_001273909.1| - 5e-05 23.7 27.5 0.021 15.4 0.5 4.8 3 1 1 4 4 4 3 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|148643396|ref|YP_001273909.1| - 6.1e-05 23.3 37.0 0.00032 21.0 1.0 5.3 5 0 0 5 5 4 3 4Fe-4S dicluster domain DAO PF01266.19 gi|148643396|ref|YP_001273909.1| - 0.00045 19.2 0.1 0.011 14.6 0.1 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|148643396|ref|YP_001273909.1| - 0.0013 17.8 0.3 0.0032 16.5 0.2 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_4 PF12800.2 gi|148643396|ref|YP_001273909.1| - 0.0014 18.7 43.7 0.0018 18.4 1.2 5.9 5 0 0 5 5 5 2 4Fe-4S binding domain NAD_binding_8 PF13450.1 gi|148643396|ref|YP_001273909.1| - 0.0034 17.3 0.0 0.0076 16.2 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|148643396|ref|YP_001273909.1| - 0.0099 14.9 0.1 0.017 14.1 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_3 PF12798.2 gi|148643396|ref|YP_001273909.1| - 0.011 16.2 5.4 0.011 16.2 3.7 7.0 6 1 0 6 6 5 0 4Fe-4S binding domain Pyr_redox_3 PF13738.1 gi|148643396|ref|YP_001273909.1| - 0.014 15.4 0.2 0.11 12.5 0.1 2.4 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_13 PF13370.1 gi|148643396|ref|YP_001273909.1| - 0.018 15.3 31.2 0.51 10.7 1.2 4.8 4 0 0 4 4 4 0 4Fe-4S single cluster domain GIDA PF01134.17 gi|148643396|ref|YP_001273909.1| - 0.02 13.7 0.1 0.062 12.1 0.0 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A Thi4 PF01946.12 gi|148643396|ref|YP_001273909.1| - 0.028 13.5 0.0 0.053 12.5 0.0 1.4 1 0 0 1 1 1 0 Thi4 family SHMT PF00464.14 gi|148643397|ref|YP_001273910.1| - 1.4e-78 264.0 0.4 1.9e-78 263.6 0.3 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|148643397|ref|YP_001273910.1| - 4.9e-08 32.3 0.0 1.6e-07 30.6 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|148643397|ref|YP_001273910.1| - 7.6e-07 28.5 0.0 1.2e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.8 gi|148643397|ref|YP_001273910.1| - 0.00016 20.5 0.0 0.00032 19.5 0.0 1.4 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.14 gi|148643397|ref|YP_001273910.1| - 0.0047 15.7 0.1 0.0077 15.0 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Pepsin-I3 PF06394.8 gi|148643397|ref|YP_001273910.1| - 0.15 11.7 0.8 3.2 7.4 0.1 2.5 2 0 0 2 2 2 0 Pepsin inhibitor-3-like repeated domain Flavoprotein PF02441.14 gi|148643398|ref|YP_001273911.1| - 2.1e-19 69.4 0.0 3.2e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.22 gi|148643398|ref|YP_001273911.1| - 2.7e-09 36.2 11.6 4.7e-09 35.4 1.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148643398|ref|YP_001273911.1| - 2.7e-08 33.9 1.8 3.2e-05 24.0 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148643398|ref|YP_001273911.1| - 3e-07 30.7 23.0 0.00012 22.4 1.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148643398|ref|YP_001273911.1| - 1e-06 28.4 7.7 9.5e-06 25.3 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148643398|ref|YP_001273911.1| - 1.1e-06 28.2 11.3 2e-06 27.3 1.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148643398|ref|YP_001273911.1| - 3.5e-06 27.6 8.3 5.2e-05 23.9 0.2 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|148643398|ref|YP_001273911.1| - 3.7e-06 26.8 0.9 0.00016 21.6 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148643398|ref|YP_001273911.1| - 6.7e-06 26.3 1.6 0.0021 18.3 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148643398|ref|YP_001273911.1| - 6.7e-05 22.9 11.5 0.00034 20.6 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|148643398|ref|YP_001273911.1| - 0.00026 20.7 2.4 0.00026 20.7 1.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148643398|ref|YP_001273911.1| - 0.0091 16.3 2.6 0.0091 16.3 1.8 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|148643398|ref|YP_001273911.1| - 0.021 15.3 6.1 0.021 15.3 4.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|148643398|ref|YP_001273911.1| - 0.022 15.3 0.5 0.022 15.3 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|148643398|ref|YP_001273911.1| - 0.027 14.8 1.5 0.027 14.8 1.1 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Glyco_trans_1_3 PF13528.1 gi|148643398|ref|YP_001273911.1| - 0.038 13.1 0.0 0.049 12.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 1 Fer4_21 PF14697.1 gi|148643398|ref|YP_001273911.1| - 0.048 13.5 14.0 0.14 11.9 9.7 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF192 PF02643.10 gi|148643399|ref|YP_001273912.1| - 2.7e-16 59.1 0.0 3.1e-16 58.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 AdoMet_Synthase PF01941.14 gi|148643400|ref|YP_001273913.1| - 8.2e-178 590.9 6.8 9.2e-178 590.7 4.7 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) tRNA-synt_1 PF00133.17 gi|148643401|ref|YP_001273914.1| - 5.3e-198 658.8 2.7 1.1e-197 657.8 1.9 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|148643401|ref|YP_001273914.1| - 2.7e-29 101.8 0.7 2.4e-28 98.8 0.0 2.4 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|148643401|ref|YP_001273914.1| - 1.6e-28 99.5 4.1 4.3e-13 48.6 0.6 3.7 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|148643401|ref|YP_001273914.1| - 1.2e-06 27.4 0.0 4.6e-06 25.5 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|148643401|ref|YP_001273914.1| - 1.9e-06 27.2 0.3 1.2e-05 24.6 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain Zn-ribbon_8 PF09723.5 gi|148643401|ref|YP_001273914.1| - 0.57 10.1 5.5 5 7.1 0.0 3.9 5 0 0 5 5 5 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|148643401|ref|YP_001273914.1| - 1.4 8.7 6.2 0.89 9.4 0.0 3.2 3 0 0 3 3 3 0 PhnA Zinc-Ribbon AIRS_C PF02769.17 gi|148643402|ref|YP_001273915.1| - 4.6e-54 182.5 3.7 4.8e-29 101.3 0.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|148643402|ref|YP_001273915.1| - 8.4e-47 157.3 1.7 8.3e-24 83.6 0.1 2.7 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain MoeA_N PF03453.12 gi|148643403|ref|YP_001273916.1| - 2e-49 167.0 0.1 4.3e-49 165.9 0.0 1.6 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|148643403|ref|YP_001273916.1| - 1.6e-24 85.9 0.2 2.8e-24 85.1 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|148643403|ref|YP_001273916.1| - 4.7e-14 52.0 0.0 2e-13 50.1 0.0 2.0 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) Peptidase_M50 PF02163.17 gi|148643404|ref|YP_001273917.1| - 5.9e-27 93.8 0.9 5.9e-27 93.8 0.6 2.4 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|148643404|ref|YP_001273917.1| - 6.6e-06 25.9 0.2 1.3e-05 25.0 0.2 1.4 1 0 0 1 1 1 1 PDZ domain Rubrerythrin PF02915.12 gi|148643408|ref|YP_001273921.1| - 1.7e-12 47.8 8.0 1.9e-11 44.4 5.5 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|148643408|ref|YP_001273921.1| - 2.7e-06 27.1 6.0 6.5e-05 22.7 4.2 2.0 1 1 0 1 1 1 1 Ferritin-like domain CDC37_C PF08564.5 gi|148643408|ref|YP_001273921.1| - 0.032 14.0 1.7 0.059 13.2 1.2 1.4 1 0 0 1 1 1 0 Cdc37 C terminal domain IF3_C PF00707.17 gi|148643408|ref|YP_001273921.1| - 0.17 11.6 0.7 0.23 11.2 0.2 1.5 2 0 0 2 2 2 0 Translation initiation factor IF-3, C-terminal domain FKBP_N PF01346.13 gi|148643408|ref|YP_001273921.1| - 1.1 9.3 9.5 1.3 9.0 4.0 2.0 1 1 1 2 2 2 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Lactamase_B PF00753.22 gi|148643409|ref|YP_001273922.1| - 5.9e-20 71.7 0.4 8.6e-20 71.2 0.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|148643409|ref|YP_001273922.1| - 9.2e-13 48.4 1.0 7.6e-12 45.4 0.0 2.3 2 1 0 2 2 2 1 Flavodoxin FMN_red PF03358.10 gi|148643409|ref|YP_001273922.1| - 0.071 12.6 0.0 0.53 9.7 0.0 2.3 2 1 0 2 2 2 0 NADPH-dependent FMN reductase V4R PF02830.13 gi|148643410|ref|YP_001273923.1| - 3.8e-19 68.2 1.4 5.8e-19 67.6 0.9 1.3 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.15 gi|148643410|ref|YP_001273923.1| - 2.1e-12 46.5 0.0 3.8e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|148643410|ref|YP_001273923.1| - 4.7e-05 23.3 0.1 8.1e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|148643410|ref|YP_001273923.1| - 4.9e-05 23.0 0.0 0.0001 22.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|148643410|ref|YP_001273923.1| - 0.00019 20.7 0.1 0.00032 20.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|148643410|ref|YP_001273923.1| - 0.00041 19.9 0.0 0.00073 19.1 0.0 1.3 1 0 0 1 1 1 1 MarR family Sulfolobus_pRN PF05584.6 gi|148643410|ref|YP_001273923.1| - 0.0018 18.2 0.1 0.0036 17.2 0.0 1.5 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein TrmB PF01978.14 gi|148643410|ref|YP_001273923.1| - 0.0023 17.5 0.1 0.007 16.0 0.0 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|148643410|ref|YP_001273923.1| - 0.0044 16.5 0.0 0.0078 15.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|148643410|ref|YP_001273923.1| - 0.032 14.1 0.0 0.066 13.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_38 PF13936.1 gi|148643410|ref|YP_001273923.1| - 0.04 13.4 0.0 0.075 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|148643410|ref|YP_001273923.1| - 0.04 14.2 0.1 0.19 12.1 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|148643410|ref|YP_001273923.1| - 0.049 13.2 0.2 0.11 12.2 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.1 gi|148643410|ref|YP_001273923.1| - 0.058 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.12 gi|148643410|ref|YP_001273923.1| - 0.073 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_40 PF14493.1 gi|148643410|ref|YP_001273923.1| - 0.099 12.8 0.0 0.26 11.5 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|148643410|ref|YP_001273923.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TP_methylase PF00590.15 gi|148643411|ref|YP_001273924.1| - 9.5e-46 156.1 0.0 1.1e-45 155.9 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Helicase_C_2 PF13307.1 gi|148643412|ref|YP_001273925.1| - 1.6e-21 76.9 0.0 3.6e-21 75.8 0.0 1.6 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|148643412|ref|YP_001273925.1| - 4.5e-07 29.4 0.1 1.4e-06 27.8 0.0 1.9 2 0 0 2 2 2 1 DEAD_2 ResIII PF04851.10 gi|148643412|ref|YP_001273925.1| - 4.5e-07 29.8 0.4 4.4e-06 26.6 0.1 2.6 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|148643412|ref|YP_001273925.1| - 0.00088 19.0 0.0 0.0028 17.4 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_17 PF13207.1 gi|148643412|ref|YP_001273925.1| - 0.0056 17.4 0.1 2.1 9.1 0.0 3.0 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|148643412|ref|YP_001273925.1| - 0.0065 15.7 1.6 1.1 8.4 0.1 2.4 2 0 0 2 2 2 2 PhoH-like protein AAA_22 PF13401.1 gi|148643412|ref|YP_001273925.1| - 0.011 15.8 0.1 5.4 7.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain Leu_Phe_trans PF03588.9 gi|148643412|ref|YP_001273925.1| - 0.092 11.8 0.1 0.28 10.3 0.0 1.8 2 0 0 2 2 2 0 Leucyl/phenylalanyl-tRNA protein transferase AAA_30 PF13604.1 gi|148643412|ref|YP_001273925.1| - 0.14 11.7 0.1 2.4 7.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain zf-ribbon_3 PF13248.1 gi|148643412|ref|YP_001273925.1| - 6.1 6.1 7.5 0.49 9.6 0.2 2.7 3 0 0 3 3 3 0 zinc-ribbon domain DUF2910 PF11139.3 gi|148643413|ref|YP_001273926.1| - 0.00053 19.1 0.0 0.00076 18.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2910) DUF308 PF03729.8 gi|148643413|ref|YP_001273926.1| - 0.0055 16.6 7.6 0.065 13.2 0.2 2.1 2 0 0 2 2 2 2 Short repeat of unknown function (DUF308) DUF3169 PF11368.3 gi|148643413|ref|YP_001273926.1| - 0.0059 15.8 1.0 0.01 15.0 0.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3169) DUF3185 PF11381.3 gi|148643413|ref|YP_001273926.1| - 0.011 15.5 6.0 0.018 14.7 4.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3185) Cation_efflux PF01545.16 gi|148643413|ref|YP_001273926.1| - 0.012 14.6 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 Cation efflux family Tetraspannin PF00335.15 gi|148643413|ref|YP_001273926.1| - 0.05 12.8 5.2 0.087 12.0 3.6 1.3 1 0 0 1 1 1 0 Tetraspanin family DUF872 PF05915.7 gi|148643413|ref|YP_001273926.1| - 0.079 12.8 2.2 0.23 11.3 1.5 1.8 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF1469 PF07332.6 gi|148643413|ref|YP_001273926.1| - 0.096 12.4 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) YrhK PF14145.1 gi|148643413|ref|YP_001273926.1| - 0.1 12.3 1.8 0.16 11.6 1.2 1.2 1 0 0 1 1 1 0 YrhK-like protein DUF1600 PF07667.6 gi|148643413|ref|YP_001273926.1| - 0.11 12.5 1.0 0.17 11.9 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1600) TarH PF02203.10 gi|148643413|ref|YP_001273926.1| - 0.22 11.3 0.0 0.22 11.3 0.0 2.0 2 0 0 2 2 2 0 Tar ligand binding domain homologue TraQ PF09679.5 gi|148643413|ref|YP_001273926.1| - 0.81 9.6 3.0 2.8 7.9 2.0 2.0 1 1 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) SdpI PF13630.1 gi|148643413|ref|YP_001273926.1| - 3.2 7.5 8.0 5 6.9 5.6 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF4134 PF13572.1 gi|148643413|ref|YP_001273926.1| - 4.2 7.5 6.0 9.8 6.3 4.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4134) TFIIS_C PF01096.13 gi|148643414|ref|YP_001273927.1| - 1.1e-19 69.7 3.8 1.1e-19 69.7 2.6 2.6 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|148643414|ref|YP_001273927.1| - 5.9e-08 32.2 3.5 5.9e-08 32.2 2.4 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|148643414|ref|YP_001273927.1| - 4.3e-05 23.0 8.3 0.0053 16.3 1.0 2.5 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.2 gi|148643414|ref|YP_001273927.1| - 5.9e-05 22.7 7.8 0.04 13.7 0.6 2.4 2 1 0 2 2 2 2 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|148643414|ref|YP_001273927.1| - 0.00013 21.6 1.5 0.00013 21.6 1.0 2.8 2 1 0 2 2 2 1 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|148643414|ref|YP_001273927.1| - 0.00016 21.5 9.6 0.004 17.0 0.3 2.6 2 1 0 2 2 2 2 Probable metal-binding protein (DUF2387) UPF0547 PF10571.4 gi|148643414|ref|YP_001273927.1| - 0.0004 20.0 14.2 0.095 12.4 0.1 3.8 3 1 1 4 4 4 1 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|148643414|ref|YP_001273927.1| - 0.0022 17.4 5.9 0.51 9.8 0.2 3.0 3 0 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|148643414|ref|YP_001273927.1| - 0.0064 15.7 13.9 0.5 9.7 2.0 3.4 2 1 0 2 2 2 2 TFIIB zinc-binding FdhE PF04216.7 gi|148643414|ref|YP_001273927.1| - 0.0088 15.8 0.8 0.0088 15.8 0.5 1.9 2 0 0 2 2 2 1 Protein involved in formate dehydrogenase formation zinc_ribbon_2 PF13240.1 gi|148643414|ref|YP_001273927.1| - 0.01 15.2 15.6 1.7 8.2 0.3 3.9 3 2 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148643414|ref|YP_001273927.1| - 0.014 14.6 16.9 1.2 8.3 3.0 3.8 2 2 1 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|148643414|ref|YP_001273927.1| - 0.021 14.5 9.0 2.4 7.9 1.5 3.6 3 1 0 3 3 3 0 Nudix N-terminal zf-RING_4 PF14570.1 gi|148643414|ref|YP_001273927.1| - 0.052 13.1 9.3 3 7.4 1.2 3.3 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain PhnA_Zn_Ribbon PF08274.7 gi|148643414|ref|YP_001273927.1| - 0.066 13.0 7.1 1.7 8.5 0.2 3.5 3 0 0 3 3 3 0 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.1 gi|148643414|ref|YP_001273927.1| - 0.082 12.5 12.2 0.18 11.4 0.2 4.3 3 1 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|148643414|ref|YP_001273927.1| - 0.089 12.5 12.1 0.19 11.4 0.3 4.2 3 1 0 4 4 4 0 zinc-ribbon domain DUF2296 PF10058.4 gi|148643414|ref|YP_001273927.1| - 0.12 12.0 2.9 18 5.1 0.1 3.2 3 0 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) YhfH PF14149.1 gi|148643414|ref|YP_001273927.1| - 0.22 11.3 3.2 45 3.9 0.0 3.4 3 0 0 3 3 3 0 YhfH-like protein GFA PF04828.9 gi|148643414|ref|YP_001273927.1| - 0.25 11.2 7.5 2.9 7.8 0.3 2.7 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-FPG_IleRS PF06827.9 gi|148643414|ref|YP_001273927.1| - 0.3 10.7 5.1 24 4.7 0.0 3.4 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Lar_restr_allev PF14354.1 gi|148643414|ref|YP_001273927.1| - 0.36 11.1 8.4 0.8 10.0 0.9 2.6 1 1 1 2 2 2 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.5 gi|148643414|ref|YP_001273927.1| - 0.49 9.9 16.8 3 7.4 0.2 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain RPA_interact_C PF14768.1 gi|148643414|ref|YP_001273927.1| - 0.58 10.5 7.7 4 7.9 5.3 2.3 1 1 0 1 1 1 0 Replication protein A interacting C-terminal DUF35_N PF12172.3 gi|148643414|ref|YP_001273927.1| - 0.6 10.1 5.8 8.3 6.4 0.1 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF164 PF02591.10 gi|148643414|ref|YP_001273927.1| - 0.79 9.6 2.9 10 6.0 0.1 2.9 3 0 0 3 3 3 0 Putative zinc ribbon domain Ogr_Delta PF04606.7 gi|148643414|ref|YP_001273927.1| - 0.81 9.3 12.5 0.27 10.9 1.2 3.1 2 2 0 2 2 2 0 Ogr/Delta-like zinc finger Rpr2 PF04032.11 gi|148643414|ref|YP_001273927.1| - 0.99 9.3 8.9 6.7 6.6 6.2 2.1 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Baculo_LEF5_C PF11792.3 gi|148643414|ref|YP_001273927.1| - 1 8.8 4.9 0.74 9.2 1.3 2.4 2 1 0 2 2 2 0 Baculoviridae late expression factor 5 C-terminal domain zf-IS66 PF13005.2 gi|148643414|ref|YP_001273927.1| - 1.2 9.1 9.3 11 6.0 0.1 3.7 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|148643414|ref|YP_001273927.1| - 1.2 9.1 18.7 1.4 8.9 0.2 4.2 4 1 0 4 4 3 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|148643414|ref|YP_001273927.1| - 1.2 8.8 15.2 0.81 9.4 1.3 3.5 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-RING_5 PF14634.1 gi|148643414|ref|YP_001273927.1| - 1.5 8.6 7.5 14 5.5 0.0 3.2 3 1 0 3 3 3 0 zinc-RING finger domain IBR PF01485.16 gi|148643414|ref|YP_001273927.1| - 1.8 8.4 11.9 1.2e+03 -0.6 8.2 3.0 1 1 0 1 1 1 0 IBR domain PolC_DP2 PF03833.8 gi|148643414|ref|YP_001273927.1| - 2.3 5.7 4.6 0.58 7.7 0.9 1.6 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 HypA PF01155.14 gi|148643414|ref|YP_001273927.1| - 2.5 7.8 9.6 2.8 7.6 1.1 2.9 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family Terminase_GpA PF05876.7 gi|148643414|ref|YP_001273927.1| - 2.6 6.3 6.7 0.43 8.8 2.5 1.4 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) zf-RING_3 PF14369.1 gi|148643414|ref|YP_001273927.1| - 2.7 8.0 8.1 5.8 7.0 0.1 3.1 3 1 0 3 3 3 0 zinc-finger zf-C3HC4_2 PF13923.1 gi|148643414|ref|YP_001273927.1| - 3.5 7.7 6.4 36 4.5 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|148643414|ref|YP_001273927.1| - 3.8 7.3 7.3 26 4.6 0.4 3.3 3 1 0 3 3 3 0 Prokaryotic RING finger family 1 DNA_RNApol_7kD PF03604.8 gi|148643414|ref|YP_001273927.1| - 5 6.6 12.0 14 5.2 0.0 3.9 4 1 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit DUF2082 PF09855.4 gi|148643414|ref|YP_001273927.1| - 5.1 7.0 9.3 24 4.8 0.1 3.5 2 1 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) NOB1_Zn_bind PF08772.6 gi|148643414|ref|YP_001273927.1| - 5.2 6.9 12.4 12 5.8 0.2 3.4 2 1 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Sgf11 PF08209.6 gi|148643414|ref|YP_001273927.1| - 7.3 6.0 6.6 16 4.9 0.1 3.1 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Rubredoxin PF00301.15 gi|148643414|ref|YP_001273927.1| - 7.9 6.4 11.2 1.2 9.0 0.1 3.6 3 1 1 4 4 4 0 Rubredoxin NUDIX PF00293.23 gi|148643415|ref|YP_001273928.1| - 2.7e-23 82.0 0.0 2.9e-23 81.9 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain DUF2521 PF10730.4 gi|148643415|ref|YP_001273928.1| - 0.046 13.5 0.0 0.069 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2521) RNA_pol_L_2 PF13656.1 gi|148643416|ref|YP_001273929.1| - 1.8e-23 81.7 0.0 2.7e-23 81.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|148643416|ref|YP_001273929.1| - 2.9e-10 39.1 0.0 4.9e-10 38.3 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain ECR1_N PF14382.1 gi|148643417|ref|YP_001273930.1| - 1.1e-14 53.4 0.0 1.7e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.4 gi|148643417|ref|YP_001273930.1| - 1.2e-07 31.5 0.0 2.6e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Exosome component EXOSC1/CSL4 S1 PF00575.18 gi|148643417|ref|YP_001273930.1| - 0.00019 21.4 0.0 0.16 12.0 0.0 2.6 2 0 0 2 2 2 2 S1 RNA binding domain zf-UDP PF14569.1 gi|148643417|ref|YP_001273930.1| - 0.043 13.5 2.6 0.087 12.5 1.8 1.4 1 0 0 1 1 1 0 Zinc-binding RING-finger zf-BED PF02892.10 gi|148643417|ref|YP_001273930.1| - 0.2 11.4 3.1 0.37 10.5 2.2 1.5 1 0 0 1 1 1 0 BED zinc finger DUF1247 PF06851.6 gi|148643417|ref|YP_001273930.1| - 0.22 11.1 3.3 0.34 10.5 2.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1247) Diphthamide_syn PF01866.12 gi|148643418|ref|YP_001273931.1| - 1.4e-111 372.6 0.1 1.6e-111 372.4 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF2194 PF09960.4 gi|148643418|ref|YP_001273931.1| - 0.00064 17.9 1.6 0.006 14.6 0.1 2.0 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2194) ATP_bind_1 PF03029.12 gi|148643418|ref|YP_001273931.1| - 0.0039 16.7 0.1 0.015 14.8 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Glyco_trans_4_2 PF13477.1 gi|148643418|ref|YP_001273931.1| - 0.034 13.9 1.1 1.1 9.1 0.0 2.6 3 0 0 3 3 3 0 Glycosyl transferase 4-like 3H PF02829.9 gi|148643418|ref|YP_001273931.1| - 0.052 13.5 0.2 0.15 12.1 0.1 1.8 2 0 0 2 2 2 0 3H domain Fe-ADH_2 PF13685.1 gi|148643418|ref|YP_001273931.1| - 0.069 12.4 0.0 0.47 9.7 0.0 2.0 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase SapB_1 PF05184.10 gi|148643418|ref|YP_001273931.1| - 0.22 11.3 1.1 2.9 7.8 0.2 2.5 2 0 0 2 2 2 0 Saposin-like type B, region 1 Pribosyltran PF00156.22 gi|148643419|ref|YP_001273932.1| - 2e-19 69.5 0.7 3.5e-19 68.7 0.5 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|148643419|ref|YP_001273932.1| - 0.0007 18.9 0.1 0.0012 18.1 0.0 1.4 2 0 0 2 2 2 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|148643419|ref|YP_001273932.1| - 0.0032 16.7 0.0 0.0044 16.2 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase SRP54 PF00448.17 gi|148643420|ref|YP_001273933.1| - 9e-72 240.6 0.6 1.5e-71 239.9 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|148643420|ref|YP_001273933.1| - 2.8e-30 104.6 8.3 2.8e-30 104.6 5.7 2.9 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|148643420|ref|YP_001273933.1| - 1.5e-17 63.4 2.6 6.6e-17 61.3 1.8 2.2 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain MobB PF03205.9 gi|148643420|ref|YP_001273933.1| - 2.4e-05 24.0 0.0 9.1e-05 22.1 0.0 2.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|148643420|ref|YP_001273933.1| - 3.4e-05 24.6 0.1 0.00031 21.5 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|148643420|ref|YP_001273933.1| - 9.9e-05 22.2 0.0 0.00019 21.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|148643420|ref|YP_001273933.1| - 0.00012 22.2 0.3 0.0026 17.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.12 gi|148643420|ref|YP_001273933.1| - 0.00036 20.1 0.7 0.013 15.0 0.0 3.1 4 0 0 4 4 3 1 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.18 gi|148643420|ref|YP_001273933.1| - 0.00052 19.9 1.2 0.012 15.5 0.0 3.0 3 0 0 3 3 3 1 50S ribosome-binding GTPase cobW PF02492.14 gi|148643420|ref|YP_001273933.1| - 0.00083 18.8 2.9 0.0013 18.1 0.4 2.4 2 1 0 2 2 1 1 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.15 gi|148643420|ref|YP_001273933.1| - 0.0021 16.7 0.0 0.0053 15.5 0.0 1.5 1 1 0 1 1 1 1 G-protein alpha subunit Zeta_toxin PF06414.7 gi|148643420|ref|YP_001273933.1| - 0.0051 15.9 0.0 0.012 14.6 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|148643420|ref|YP_001273933.1| - 0.0057 16.6 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain CbiA PF01656.18 gi|148643420|ref|YP_001273933.1| - 0.0068 15.8 0.2 0.027 13.8 0.1 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.1 gi|148643420|ref|YP_001273933.1| - 0.0082 16.4 0.1 0.029 14.6 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.1 gi|148643420|ref|YP_001273933.1| - 0.011 15.7 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain 6PF2K PF01591.13 gi|148643420|ref|YP_001273933.1| - 0.012 14.7 0.0 0.048 12.7 0.0 2.0 2 0 0 2 2 2 0 6-phosphofructo-2-kinase RNA_helicase PF00910.17 gi|148643420|ref|YP_001273933.1| - 0.019 15.1 0.1 0.17 12.1 0.1 2.4 1 1 0 1 1 1 0 RNA helicase APS_kinase PF01583.15 gi|148643420|ref|YP_001273933.1| - 0.021 14.4 0.3 0.11 12.1 0.0 2.2 3 0 0 3 3 3 0 Adenylylsulphate kinase Arf PF00025.16 gi|148643420|ref|YP_001273933.1| - 0.038 13.2 3.7 0.039 13.1 0.0 2.6 3 0 0 3 3 3 0 ADP-ribosylation factor family LpxK PF02606.9 gi|148643420|ref|YP_001273933.1| - 0.05 12.5 0.0 0.085 11.7 0.0 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Fe-ADH_2 PF13685.1 gi|148643420|ref|YP_001273933.1| - 0.055 12.7 2.6 12 5.1 0.0 3.5 4 1 0 4 4 4 0 Iron-containing alcohol dehydrogenase Thymidylate_kin PF02223.12 gi|148643420|ref|YP_001273933.1| - 0.063 12.6 0.7 0.22 10.8 0.0 2.3 3 0 0 3 3 3 0 Thymidylate kinase AAA PF00004.24 gi|148643420|ref|YP_001273933.1| - 0.075 13.2 0.5 0.67 10.1 0.1 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|148643420|ref|YP_001273933.1| - 0.094 13.2 0.8 0.89 10.0 0.0 2.8 3 1 0 3 3 2 0 Miro-like protein AAA_19 PF13245.1 gi|148643420|ref|YP_001273933.1| - 0.1 12.3 0.0 0.51 10.1 0.0 2.1 2 1 0 2 2 2 0 Part of AAA domain TPP_enzyme_M PF00205.17 gi|148643420|ref|YP_001273933.1| - 0.11 12.2 0.0 0.71 9.6 0.0 2.2 1 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain RecX PF02631.11 gi|148643420|ref|YP_001273933.1| - 0.16 12.2 1.5 2.7 8.2 0.0 3.3 3 1 0 3 3 3 0 RecX family THUMP PF02926.12 gi|148643421|ref|YP_001273934.1| - 3.4e-08 33.4 6.3 8.3e-08 32.2 4.4 1.7 1 0 0 1 1 1 1 THUMP domain zf-C4pol PF14260.1 gi|148643421|ref|YP_001273934.1| - 0.17 11.9 0.1 0.17 11.9 0.1 2.5 3 1 0 3 3 3 0 C4-type zinc-finger of DNA polymerase delta DUF4163 PF13739.1 gi|148643421|ref|YP_001273934.1| - 1.1 10.0 7.8 0.3 11.8 0.5 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4163) MoaC PF01967.16 gi|148643422|ref|YP_001273935.1| - 2e-51 173.2 3.3 2.2e-51 173.0 2.3 1.0 1 0 0 1 1 1 1 MoaC family Sec61_beta PF03911.11 gi|148643423|ref|YP_001273936.1| - 1.4e-14 53.6 0.1 1.5e-14 53.4 0.1 1.1 1 0 0 1 1 1 1 Sec61beta family His_biosynth PF00977.16 gi|148643424|ref|YP_001273937.1| - 2.8e-79 265.6 0.3 3.2e-79 265.3 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|148643424|ref|YP_001273937.1| - 1.7e-05 24.0 1.1 0.001 18.2 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|148643424|ref|YP_001273937.1| - 3.1e-05 22.9 0.2 0.00048 19.0 0.0 2.0 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|148643424|ref|YP_001273937.1| - 9.6e-05 21.7 0.5 0.00042 19.6 0.1 2.1 2 1 1 3 3 3 1 PcrB family NMO PF03060.10 gi|148643424|ref|YP_001273937.1| - 0.00015 21.0 0.2 0.34 10.0 0.1 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.16 gi|148643424|ref|YP_001273937.1| - 0.0044 16.0 0.0 0.021 13.7 0.0 1.9 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase G3P_antiterm PF04309.7 gi|148643424|ref|YP_001273937.1| - 0.0048 15.9 0.0 0.0092 15.0 0.0 1.4 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.12 gi|148643424|ref|YP_001273937.1| - 0.012 14.7 0.1 3.4 6.7 0.0 2.2 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI IF-2 PF11987.3 gi|148643424|ref|YP_001273937.1| - 0.042 13.7 0.0 0.085 12.7 0.0 1.5 1 0 0 1 1 1 0 Translation-initiation factor 2 OGG_N PF07934.7 gi|148643425|ref|YP_001273938.1| - 2e-14 53.5 0.4 9.6e-14 51.3 0.1 2.0 2 0 0 2 2 2 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|148643425|ref|YP_001273938.1| - 5e-12 46.0 0.0 9.5e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|148643425|ref|YP_001273938.1| - 6.6e-05 22.3 0.0 0.00015 21.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|148643425|ref|YP_001273938.1| - 0.011 15.9 0.0 0.36 11.0 0.0 1.6 1 1 1 2 2 2 0 Helix-hairpin-helix domain Glyoxalase_2 PF12681.2 gi|148643426|ref|YP_001273939.1| - 2.4e-13 50.6 0.0 2.8e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|148643426|ref|YP_001273939.1| - 1.2e-12 47.9 0.1 3.5e-12 46.4 0.1 1.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|148643426|ref|YP_001273939.1| - 2.3e-08 34.0 0.0 8.1e-08 32.2 0.0 1.9 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|148643426|ref|YP_001273939.1| - 0.055 13.3 0.0 0.65 9.8 0.0 2.0 1 1 1 2 2 2 0 Glyoxalase-like domain Pro_isomerase PF00160.16 gi|148643427|ref|YP_001273940.1| - 8.2e-47 159.2 0.3 9.5e-47 159.0 0.2 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Aminotran_3 PF00202.16 gi|148643428|ref|YP_001273941.1| - 2.8e-111 371.6 0.1 3.3e-111 371.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|148643428|ref|YP_001273941.1| - 2.1e-06 27.0 0.0 5.1e-06 25.8 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|148643428|ref|YP_001273941.1| - 0.00052 19.0 0.0 0.00073 18.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|148643428|ref|YP_001273941.1| - 0.0031 16.3 0.0 0.0057 15.4 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|148643428|ref|YP_001273941.1| - 0.11 11.5 0.2 0.33 9.9 0.1 1.9 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family NUDIX PF00293.23 gi|148643429|ref|YP_001273942.1| - 1.3e-21 76.6 0.0 1.4e-21 76.5 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|148643429|ref|YP_001273942.1| - 5.5e-08 32.2 0.0 6.7e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain TFIID_20kDa PF03847.8 gi|148643429|ref|YP_001273942.1| - 0.012 15.8 0.1 0.021 15.0 0.1 1.4 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A Acyl_transf_3 PF01757.17 gi|148643430|ref|YP_001273943.1| - 1.4e-36 126.0 41.1 1.6e-36 125.8 28.5 1.1 1 0 0 1 1 1 1 Acyltransferase family Orn_Arg_deC_N PF02784.11 gi|148643431|ref|YP_001273944.1| - 5.4e-51 173.1 0.0 7.6e-51 172.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|148643431|ref|YP_001273944.1| - 5.6e-24 84.0 0.0 9.3e-24 83.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DAP_epimerase PF01678.14 gi|148643432|ref|YP_001273945.1| - 1.7e-63 211.9 0.1 2.3e-34 117.9 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.11 gi|148643432|ref|YP_001273945.1| - 0.0082 15.3 0.0 0.012 14.8 0.0 1.1 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Ribosomal_L7Ae PF01248.21 gi|148643432|ref|YP_001273945.1| - 0.13 11.7 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family MTS PF05175.9 gi|148643433|ref|YP_001273946.1| - 1.8e-21 76.2 0.1 2.3e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|148643433|ref|YP_001273946.1| - 5.8e-15 55.3 0.0 7.6e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|148643433|ref|YP_001273946.1| - 6.1e-14 51.8 0.7 7.9e-14 51.5 0.5 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|148643433|ref|YP_001273946.1| - 6.2e-13 48.5 0.0 1.1e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|148643433|ref|YP_001273946.1| - 4.2e-11 43.4 0.0 7.4e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148643433|ref|YP_001273946.1| - 1.4e-07 31.3 0.0 3.4e-07 30.1 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|148643433|ref|YP_001273946.1| - 8.2e-07 29.4 0.0 3.7e-06 27.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|148643433|ref|YP_001273946.1| - 1.5e-06 27.7 0.0 2.2e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Met_10 PF02475.11 gi|148643433|ref|YP_001273946.1| - 6.2e-06 25.9 0.1 7.7e-06 25.6 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.7 gi|148643433|ref|YP_001273946.1| - 8.4e-06 26.1 0.1 3.2e-05 24.3 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|148643433|ref|YP_001273946.1| - 3e-05 24.3 0.0 4.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|148643433|ref|YP_001273946.1| - 0.00016 21.2 0.0 0.00025 20.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.6 gi|148643433|ref|YP_001273946.1| - 0.00023 19.9 0.5 0.00034 19.4 0.4 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase rRNA_methylase PF06962.7 gi|148643433|ref|YP_001273946.1| - 0.00026 20.6 0.1 0.00068 19.3 0.0 1.6 2 0 0 2 2 2 1 Putative rRNA methylase N6_Mtase PF02384.11 gi|148643433|ref|YP_001273946.1| - 0.0004 19.5 0.1 0.00056 19.0 0.1 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase RrnaAD PF00398.15 gi|148643433|ref|YP_001273946.1| - 0.00069 18.7 0.0 0.00093 18.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TRM PF02005.11 gi|148643433|ref|YP_001273946.1| - 0.00072 18.5 0.1 0.00096 18.1 0.1 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MethyltransfD12 PF02086.10 gi|148643433|ref|YP_001273946.1| - 0.0019 17.6 0.3 0.0033 16.9 0.1 1.4 1 1 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_15 PF09445.5 gi|148643433|ref|YP_001273946.1| - 0.0026 17.3 0.0 0.0045 16.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.13 gi|148643433|ref|YP_001273946.1| - 0.0027 16.8 0.0 0.0058 15.7 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.12 gi|148643433|ref|YP_001273946.1| - 0.011 14.8 0.0 0.058 12.4 0.0 1.9 2 0 0 2 2 2 0 Putative methyltransferase TehB PF03848.9 gi|148643433|ref|YP_001273946.1| - 0.013 14.6 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB CMAS PF02353.15 gi|148643433|ref|YP_001273946.1| - 0.015 14.3 0.0 0.11 11.5 0.0 1.9 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF2431 PF10354.4 gi|148643433|ref|YP_001273946.1| - 0.019 14.9 0.1 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) Cons_hypoth95 PF03602.10 gi|148643433|ref|YP_001273946.1| - 0.026 13.9 0.0 0.042 13.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DUF3419 PF11899.3 gi|148643433|ref|YP_001273946.1| - 0.028 13.1 0.0 0.035 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) NodS PF05401.6 gi|148643433|ref|YP_001273946.1| - 0.067 12.5 0.0 0.093 12.1 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) UPF0020 PF01170.13 gi|148643433|ref|YP_001273946.1| - 0.086 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF633 PF04816.7 gi|148643433|ref|YP_001273946.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF633) RrnaAD PF00398.15 gi|148643434|ref|YP_001273947.1| - 2.7e-53 180.6 1.7 7.5e-53 179.2 1.1 1.6 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|148643434|ref|YP_001273947.1| - 2.7e-10 40.3 0.0 3.6e-10 39.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|148643434|ref|YP_001273947.1| - 1.6e-09 37.5 1.6 2e-09 37.1 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148643434|ref|YP_001273947.1| - 4.8e-09 36.7 0.0 8.1e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|148643434|ref|YP_001273947.1| - 2.3e-08 33.8 2.4 3.9e-08 33.1 0.1 2.0 2 0 0 2 2 2 1 Met-10+ like-protein MTS PF05175.9 gi|148643434|ref|YP_001273947.1| - 4.4e-08 32.6 0.0 8.2e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|148643434|ref|YP_001273947.1| - 6.1e-08 31.9 1.9 1.3e-07 30.8 0.2 2.0 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.14 gi|148643434|ref|YP_001273947.1| - 2.8e-06 27.0 0.0 4.8e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.1 gi|148643434|ref|YP_001273947.1| - 3.8e-05 23.4 0.0 0.00061 19.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|148643434|ref|YP_001273947.1| - 0.00034 20.2 0.2 0.00087 18.9 0.0 1.7 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|148643434|ref|YP_001273947.1| - 0.00035 20.9 0.1 0.0031 17.9 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|148643434|ref|YP_001273947.1| - 0.00042 19.7 0.0 0.0008 18.8 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|148643434|ref|YP_001273947.1| - 0.0005 20.3 0.0 0.0012 19.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|148643434|ref|YP_001273947.1| - 0.00063 20.1 0.0 0.0019 18.6 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|148643434|ref|YP_001273947.1| - 0.00082 18.1 1.3 0.0016 17.1 0.1 1.9 2 0 0 2 2 2 1 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.12 gi|148643434|ref|YP_001273947.1| - 0.0024 17.0 1.3 0.025 13.6 0.0 2.2 2 0 0 2 2 2 1 C-5 cytosine-specific DNA methylase Ubie_methyltran PF01209.13 gi|148643434|ref|YP_001273947.1| - 0.0025 16.9 0.1 0.0044 16.1 0.1 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Spermine_synth PF01564.12 gi|148643434|ref|YP_001273947.1| - 0.0074 15.2 0.7 0.013 14.4 0.1 1.6 2 0 0 2 2 2 1 Spermine/spermidine synthase CMAS PF02353.15 gi|148643434|ref|YP_001273947.1| - 0.0079 15.2 0.1 0.017 14.2 0.0 1.5 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.8 gi|148643434|ref|YP_001273947.1| - 0.017 14.4 0.3 0.034 13.4 0.0 1.7 2 0 0 2 2 2 0 Histone methylation protein DOT1 Methyltransf_15 PF09445.5 gi|148643434|ref|YP_001273947.1| - 0.051 13.1 1.4 0.72 9.3 0.0 2.2 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase EFP_N PF08207.7 gi|148643434|ref|YP_001273947.1| - 0.12 12.3 0.6 2.3 8.1 0.0 2.5 2 0 0 2 2 2 0 Elongation factor P (EF-P) KOW-like domain GidB PF02527.10 gi|148643434|ref|YP_001273947.1| - 0.19 10.8 4.3 0.041 13.0 0.4 1.7 2 1 0 1 1 1 0 rRNA small subunit methyltransferase G DUF655 PF04919.7 gi|148643435|ref|YP_001273948.1| - 5.2e-68 228.3 1.0 6.1e-68 228.0 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|148643435|ref|YP_001273948.1| - 1e-05 25.5 0.0 2.4e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|148643435|ref|YP_001273948.1| - 0.0014 18.5 0.0 0.0037 17.1 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|148643436|ref|YP_001273949.1| - 1e-13 51.2 4.4 1.2e-13 51.0 3.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF294_C PF10335.4 gi|148643436|ref|YP_001273949.1| - 0.16 11.5 0.4 2.2 7.8 0.1 2.0 2 0 0 2 2 2 0 Putative nucleotidyltransferase substrate binding domain Ribosomal_L21e PF01157.13 gi|148643437|ref|YP_001273950.1| - 3.9e-26 90.7 1.6 4.4e-26 90.5 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Myosin_N PF02736.14 gi|148643437|ref|YP_001273950.1| - 0.16 11.6 0.4 0.34 10.6 0.1 1.6 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Antimicrobial11 PF08106.6 gi|148643437|ref|YP_001273950.1| - 0.22 11.4 1.0 20 5.2 0.0 2.3 2 0 0 2 2 2 0 Formaecin family ABM PF03992.11 gi|148643438|ref|YP_001273951.1| - 2.2e-09 37.2 0.0 2.5e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase ADH_zinc_N PF00107.21 gi|148643440|ref|YP_001273953.1| - 6e-13 48.4 0.6 1e-12 47.7 0.4 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|148643440|ref|YP_001273953.1| - 1e-10 41.2 0.0 1.8e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.16 gi|148643440|ref|YP_001273953.1| - 0.012 15.2 0.3 0.022 14.3 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain PrmA PF06325.8 gi|148643440|ref|YP_001273953.1| - 0.076 12.1 0.7 0.1 11.7 0.5 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Transport_MerF PF11431.3 gi|148643440|ref|YP_001273953.1| - 0.31 10.7 3.0 0.66 9.6 2.1 1.5 1 0 0 1 1 1 0 Membrane transport protein MerF DUF165 PF02592.10 gi|148643442|ref|YP_001273955.1| - 1.7e-31 109.3 9.6 1.7e-31 109.3 6.6 1.8 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 NRDD PF13597.1 gi|148643443|ref|YP_001273956.1| - 1.1e-161 538.6 0.1 1.5e-161 538.1 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|148643443|ref|YP_001273956.1| - 3.5e-13 49.7 2.4 6.9e-06 26.4 0.2 2.9 1 1 1 2 2 2 2 ATP cone domain zf-ribbon_3 PF13248.1 gi|148643443|ref|YP_001273956.1| - 0.095 11.9 1.1 0.19 10.9 0.8 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|148643443|ref|YP_001273956.1| - 0.42 10.4 2.8 0.21 11.4 0.3 1.6 2 0 0 2 2 2 0 Double zinc ribbon PolC_DP2 PF03833.8 gi|148643444|ref|YP_001273957.1| - 0 1220.3 1.8 0 1217.9 1.3 1.9 1 1 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-ribbon_3 PF13248.1 gi|148643444|ref|YP_001273957.1| - 7.7 5.8 7.4 1.8 7.9 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain Filament PF00038.16 gi|148643445|ref|YP_001273958.1| - 4.7e-06 26.3 12.3 4.7e-06 26.3 8.5 3.0 1 1 2 3 3 3 2 Intermediate filament protein Apolipoprotein PF01442.13 gi|148643445|ref|YP_001273958.1| - 5.1e-05 22.8 22.4 0.019 14.5 15.5 2.7 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Myosin_tail_1 PF01576.14 gi|148643445|ref|YP_001273958.1| - 7.5e-05 20.6 39.5 0.037 11.7 27.4 2.7 1 1 0 1 1 1 1 Myosin tail Baculo_PEP_C PF04513.7 gi|148643445|ref|YP_001273958.1| - 9.4e-05 22.2 16.4 0.0039 17.0 0.3 3.5 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Lipoprotein_20 PF13942.1 gi|148643445|ref|YP_001273958.1| - 0.00021 20.8 23.3 0.0019 17.7 1.2 3.7 2 2 1 3 3 3 1 YfhG lipoprotein CENP-F_leu_zip PF10473.4 gi|148643445|ref|YP_001273958.1| - 0.00023 21.0 13.9 0.00023 21.0 9.7 3.3 1 1 1 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 IncA PF04156.9 gi|148643445|ref|YP_001273958.1| - 0.0004 20.0 32.8 0.12 11.9 12.2 3.2 1 1 1 2 2 2 1 IncA protein Reo_sigmaC PF04582.7 gi|148643445|ref|YP_001273958.1| - 0.0017 17.6 12.1 0.0036 16.5 3.6 2.5 1 1 1 2 2 2 1 Reovirus sigma C capsid protein DUF4559 PF15112.1 gi|148643445|ref|YP_001273958.1| - 0.0044 16.2 17.7 0.0044 16.2 12.3 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4559) Spc7 PF08317.6 gi|148643445|ref|YP_001273958.1| - 0.0049 15.5 16.2 0.0049 15.5 11.2 2.4 1 1 1 2 2 2 1 Spc7 kinetochore protein Mnd1 PF03962.10 gi|148643445|ref|YP_001273958.1| - 0.0065 16.1 6.8 0.0065 16.1 4.7 3.1 1 1 2 3 3 3 1 Mnd1 family Bacillus_HBL PF05791.6 gi|148643445|ref|YP_001273958.1| - 0.008 15.5 32.9 0.02 14.2 2.6 3.2 1 1 2 3 3 3 1 Bacillus haemolytic enterotoxin (HBL) CTD_bind PF04818.8 gi|148643445|ref|YP_001273958.1| - 0.011 16.0 0.4 0.042 14.0 0.2 2.2 1 1 0 1 1 1 0 RNA polymerase II-binding domain. WEMBL PF05701.6 gi|148643445|ref|YP_001273958.1| - 0.039 12.4 37.3 0.49 8.7 15.6 2.5 1 1 1 2 2 2 0 Weak chloroplast movement under blue light GAS PF13851.1 gi|148643445|ref|YP_001273958.1| - 0.04 13.1 40.7 0.49 9.5 11.6 2.8 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Cluap1 PF10234.4 gi|148643445|ref|YP_001273958.1| - 0.071 12.2 30.3 0.11 11.7 11.7 2.9 1 1 1 2 2 2 0 Clusterin-associated protein-1 ApoO PF09769.4 gi|148643445|ref|YP_001273958.1| - 0.072 12.7 3.7 1.5 8.5 0.2 3.1 1 1 2 4 4 4 0 Apolipoprotein O DUF4407 PF14362.1 gi|148643445|ref|YP_001273958.1| - 0.074 11.9 20.7 0.0073 15.2 6.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) TBPIP PF07106.8 gi|148643445|ref|YP_001273958.1| - 0.11 12.0 38.7 0.34 10.4 7.8 3.5 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) WXG100 PF06013.7 gi|148643445|ref|YP_001273958.1| - 0.11 12.4 10.5 0.57 10.2 0.2 4.8 2 2 3 5 5 5 0 Proteins of 100 residues with WXG Tup_N PF08581.5 gi|148643445|ref|YP_001273958.1| - 0.16 12.1 25.4 0.22 11.7 2.5 5.1 1 1 3 4 4 4 0 Tup N-terminal TPR_MLP1_2 PF07926.7 gi|148643445|ref|YP_001273958.1| - 0.22 11.2 36.4 0.53 10.0 9.0 4.2 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein DUF1664 PF07889.7 gi|148643445|ref|YP_001273958.1| - 0.32 10.7 27.5 0.025 14.3 5.1 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF883 PF05957.8 gi|148643445|ref|YP_001273958.1| - 0.36 11.2 16.3 0.28 11.6 0.6 3.9 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF883) DUF837 PF05769.6 gi|148643445|ref|YP_001273958.1| - 0.38 10.2 21.5 0.07 12.6 7.5 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF837) DUF3450 PF11932.3 gi|148643445|ref|YP_001273958.1| - 0.45 9.7 18.5 0.0087 15.3 4.4 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) CCDC155 PF14662.1 gi|148643445|ref|YP_001273958.1| - 0.49 9.9 30.2 0.24 10.9 8.3 3.3 1 1 1 3 3 3 0 Coiled-coil region of CCDC155 DUF948 PF06103.6 gi|148643445|ref|YP_001273958.1| - 0.55 10.1 25.2 0.038 13.8 1.9 4.4 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF4618 PF15397.1 gi|148643445|ref|YP_001273958.1| - 0.56 9.4 33.8 0.16 11.2 0.4 4.6 1 1 2 4 4 4 0 Domain of unknown function (DUF4618) Helicase_IV_N PF12462.3 gi|148643445|ref|YP_001273958.1| - 0.59 9.7 4.1 6.3 6.4 0.3 2.8 2 1 0 2 2 2 0 DNA helicase IV / RNA helicase N terminal AAA_13 PF13166.1 gi|148643445|ref|YP_001273958.1| - 0.79 8.1 37.2 12 4.1 25.4 2.0 1 1 0 1 1 1 0 AAA domain DUF2203 PF09969.4 gi|148643445|ref|YP_001273958.1| - 0.86 9.8 16.1 1.3 9.2 2.1 3.3 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) Laminin_II PF06009.7 gi|148643445|ref|YP_001273958.1| - 1.2 8.8 29.7 0.37 10.5 2.9 3.4 1 1 2 3 3 3 0 Laminin Domain II YlqD PF11068.3 gi|148643445|ref|YP_001273958.1| - 1.4 8.9 27.5 2.9 7.9 3.5 3.3 1 1 2 3 3 3 0 YlqD protein PspA_IM30 PF04012.7 gi|148643445|ref|YP_001273958.1| - 1.6 7.9 24.9 0.3 10.4 10.2 3.0 1 1 2 3 3 2 0 PspA/IM30 family Mitofilin PF09731.4 gi|148643445|ref|YP_001273958.1| - 1.6 7.2 38.0 4.4 5.8 26.3 1.5 1 1 0 1 1 1 0 Mitochondrial inner membrane protein Syntaxin PF00804.20 gi|148643445|ref|YP_001273958.1| - 1.7 8.8 37.0 13 6.0 4.3 4.0 1 1 2 3 3 3 0 Syntaxin FlaC_arch PF05377.6 gi|148643445|ref|YP_001273958.1| - 2 8.3 27.6 5.8 6.8 1.6 6.4 2 2 3 5 5 5 0 Flagella accessory protein C (FlaC) USP8_interact PF08941.5 gi|148643445|ref|YP_001273958.1| - 2 7.7 10.5 2.2 7.5 0.4 3.1 2 1 1 3 3 3 0 USP8 interacting DUF4446 PF14584.1 gi|148643445|ref|YP_001273958.1| - 2.1 8.1 20.4 1.6 8.5 0.4 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF4446) SlyX PF04102.7 gi|148643445|ref|YP_001273958.1| - 2.3 8.6 18.2 3.3 8.1 0.5 4.9 1 1 4 5 5 5 0 SlyX Sec2p PF06428.6 gi|148643445|ref|YP_001273958.1| - 2.4 8.0 39.2 6.3 6.7 0.6 5.5 1 1 4 5 5 4 0 GDP/GTP exchange factor Sec2p DUF4515 PF14988.1 gi|148643445|ref|YP_001273958.1| - 2.8 7.5 33.4 0.078 12.6 2.8 3.7 1 1 3 4 4 4 0 Domain of unknown function (DUF4515) ADIP PF11559.3 gi|148643445|ref|YP_001273958.1| - 3 7.7 33.5 1.7 8.5 3.5 3.5 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding Serine_rich PF08824.5 gi|148643445|ref|YP_001273958.1| - 3.2 7.4 15.3 0.84 9.3 1.3 3.1 1 1 1 3 3 3 0 Serine rich protein interaction domain HALZ PF02183.13 gi|148643445|ref|YP_001273958.1| - 3.7 7.3 36.3 0.26 11.0 0.5 6.7 5 2 2 7 7 6 0 Homeobox associated leucine zipper Ax_dynein_light PF10211.4 gi|148643445|ref|YP_001273958.1| - 4 7.2 34.9 0.46 10.2 2.3 3.8 1 1 3 4 4 4 0 Axonemal dynein light chain COG2 PF06148.6 gi|148643445|ref|YP_001273958.1| - 4.1 7.2 23.1 0.66 9.8 5.1 3.3 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Orbi_VP5 PF00901.12 gi|148643445|ref|YP_001273958.1| - 5.7 5.0 21.6 0.11 10.7 1.3 2.2 1 1 0 2 2 2 0 Orbivirus outer capsid protein VP5 Lebercilin PF15619.1 gi|148643445|ref|YP_001273958.1| - 5.9 6.2 35.3 1.3 8.3 19.6 2.8 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Prominin PF05478.6 gi|148643445|ref|YP_001273958.1| - 6.2 4.2 26.4 1.2 6.5 10.9 2.1 1 1 1 2 2 2 0 Prominin DUF4164 PF13747.1 gi|148643445|ref|YP_001273958.1| - 7.2 6.8 26.7 0.86 9.7 1.0 3.7 1 1 1 3 3 3 0 Domain of unknown function (DUF4164) Fib_alpha PF08702.5 gi|148643445|ref|YP_001273958.1| - 7.3 6.7 29.0 5.4 7.1 2.4 3.6 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family LOH1CR12 PF10158.4 gi|148643445|ref|YP_001273958.1| - 7.8 6.3 11.9 1.2 8.9 0.6 3.3 1 1 3 4 4 4 0 Tumour suppressor protein ATG16 PF08614.6 gi|148643445|ref|YP_001273958.1| - 8 6.2 37.0 5.5 6.7 5.5 4.1 1 1 3 4 4 4 0 Autophagy protein 16 (ATG16) DUF1515 PF07439.6 gi|148643445|ref|YP_001273958.1| - 8.2 6.2 10.6 15 5.4 0.1 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1515) dCMP_cyt_deam_1 PF00383.17 gi|148643446|ref|YP_001273959.1| - 1.4e-23 82.4 0.0 2e-23 81.9 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.1 gi|148643446|ref|YP_001273959.1| - 0.0059 16.4 0.3 0.84 9.4 0.1 2.2 1 1 1 2 2 2 2 Bd3614-like deaminase APOBEC_N PF08210.6 gi|148643446|ref|YP_001273959.1| - 0.059 12.9 0.0 0.16 11.5 0.0 1.8 2 0 0 2 2 2 0 APOBEC-like N-terminal domain tRNA-synt_1f PF01921.13 gi|148643447|ref|YP_001273960.1| - 1.4e-130 435.1 0.2 1.9e-130 434.7 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|148643447|ref|YP_001273960.1| - 2.6e-06 26.3 0.1 5.1e-05 22.1 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (M) ThiC PF01964.13 gi|148643448|ref|YP_001273961.1| - 6.5e-187 621.2 0.8 7.3e-187 621.0 0.5 1.0 1 0 0 1 1 1 1 ThiC family PfkB PF00294.19 gi|148643449|ref|YP_001273962.1| - 2.6e-56 190.9 0.0 3.2e-56 190.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HTH_1 PF00126.22 gi|148643450|ref|YP_001273963.1| - 5.3e-08 32.4 0.0 8.4e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.15 gi|148643450|ref|YP_001273963.1| - 0.00054 19.1 0.0 0.00076 18.6 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_30 PF13556.1 gi|148643450|ref|YP_001273963.1| - 0.038 13.5 0.0 0.1 12.1 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Collagen_bind PF05737.7 gi|148643450|ref|YP_001273963.1| - 0.11 12.7 2.9 4.4 7.4 0.0 3.4 3 1 0 3 3 3 0 Collagen binding domain NUMOD1 PF07453.8 gi|148643450|ref|YP_001273963.1| - 2 8.3 5.7 3.4 7.6 0.0 3.6 3 0 0 3 3 3 0 NUMOD1 domain SIS PF01380.17 gi|148643451|ref|YP_001273964.1| - 4.8e-18 65.0 0.1 6.9e-18 64.5 0.1 1.2 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|148643451|ref|YP_001273964.1| - 3.3e-11 43.0 3.5 1e-06 28.5 0.3 2.3 1 1 1 2 2 2 2 SIS domain FdhD-NarQ PF02634.10 gi|148643452|ref|YP_001273965.1| - 1.1e-60 205.0 0.0 1.3e-60 204.8 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DDRGK PF09756.4 gi|148643452|ref|YP_001273965.1| - 0.0043 16.4 0.0 0.01 15.2 0.0 1.5 1 0 0 1 1 1 1 DDRGK domain Peripla_BP_2 PF01497.13 gi|148643453|ref|YP_001273966.1| - 2.8e-28 98.6 0.5 3.4e-28 98.3 0.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF2024 PF09630.5 gi|148643453|ref|YP_001273966.1| - 0.029 14.0 0.1 0.065 12.9 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2024) DUF3139 PF11337.3 gi|148643453|ref|YP_001273966.1| - 0.76 10.0 3.3 3.6 7.9 0.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3139) FecCD PF01032.13 gi|148643454|ref|YP_001273967.1| - 1.9e-90 302.8 32.0 2.3e-90 302.5 22.2 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|148643454|ref|YP_001273967.1| - 0.00061 19.1 23.7 0.00061 19.1 16.4 1.9 2 1 0 2 2 2 1 ABC 3 transport family ABC_tran PF00005.22 gi|148643455|ref|YP_001273968.1| - 2.3e-33 115.3 0.0 3.1e-33 114.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|148643455|ref|YP_001273968.1| - 1.5e-14 54.6 9.9 1.2e-13 51.6 3.2 2.4 2 1 0 2 2 1 1 AAA domain AAA_15 PF13175.1 gi|148643455|ref|YP_001273968.1| - 1.6e-07 30.7 6.8 0.0026 16.8 0.1 2.4 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|148643455|ref|YP_001273968.1| - 1.9e-07 30.5 0.0 0.0005 19.3 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|148643455|ref|YP_001273968.1| - 7.3e-05 23.1 0.9 0.00013 22.3 0.3 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|148643455|ref|YP_001273968.1| - 0.00037 20.6 0.8 0.0052 16.9 0.5 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|148643455|ref|YP_001273968.1| - 0.00069 18.8 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|148643455|ref|YP_001273968.1| - 0.0015 18.5 0.2 0.0024 17.8 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|148643455|ref|YP_001273968.1| - 0.0033 16.9 0.0 0.0067 15.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|148643455|ref|YP_001273968.1| - 0.0037 16.7 0.1 0.28 10.5 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|148643455|ref|YP_001273968.1| - 0.0046 16.8 0.0 0.22 11.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|148643455|ref|YP_001273968.1| - 0.007 16.0 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|148643455|ref|YP_001273968.1| - 0.0082 16.3 0.1 0.08 13.1 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|148643455|ref|YP_001273968.1| - 0.0086 15.9 0.0 0.1 12.5 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|148643455|ref|YP_001273968.1| - 0.017 13.6 0.2 0.22 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|148643455|ref|YP_001273968.1| - 0.023 14.3 0.0 0.057 13.0 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_24 PF13479.1 gi|148643455|ref|YP_001273968.1| - 0.024 14.2 0.0 0.038 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|148643455|ref|YP_001273968.1| - 0.03 13.7 0.1 0.076 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|148643455|ref|YP_001273968.1| - 0.035 13.8 0.0 0.067 12.8 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase AAA_28 PF13521.1 gi|148643455|ref|YP_001273968.1| - 0.042 13.8 0.0 0.065 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|148643455|ref|YP_001273968.1| - 0.049 14.4 0.2 0.2 12.4 0.1 2.0 2 1 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|148643455|ref|YP_001273968.1| - 0.056 12.1 0.0 0.072 11.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_30 PF13604.1 gi|148643455|ref|YP_001273968.1| - 0.066 12.7 0.0 0.16 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|148643455|ref|YP_001273968.1| - 0.067 12.6 0.0 0.3 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain Mg_chelatase PF01078.16 gi|148643455|ref|YP_001273968.1| - 0.073 12.2 0.0 0.15 11.1 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|148643455|ref|YP_001273968.1| - 0.083 12.5 0.1 0.19 11.3 0.1 1.6 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.4 gi|148643455|ref|YP_001273968.1| - 0.11 11.0 0.0 0.4 9.2 0.0 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ATP-synt_ab PF00006.20 gi|148643455|ref|YP_001273968.1| - 0.11 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain FmdE PF02663.9 gi|148643456|ref|YP_001273969.1| - 4.3e-29 101.0 0.1 6.2e-29 100.5 0.1 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|148643456|ref|YP_001273969.1| - 1.4e-09 37.5 0.3 2.6e-09 36.6 0.2 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger zf-C4_ClpX PF06689.8 gi|148643456|ref|YP_001273969.1| - 0.0037 16.7 0.4 0.0076 15.7 0.3 1.6 1 0 0 1 1 1 1 ClpX C4-type zinc finger C1_2 PF03107.11 gi|148643456|ref|YP_001273969.1| - 0.36 10.9 0.3 0.36 10.9 0.2 2.0 2 0 0 2 2 2 0 C1 domain DUF4399 PF14347.1 gi|148643457|ref|YP_001273970.1| - 3.4e-37 126.3 16.2 1.7e-09 37.5 0.2 6.8 6 1 1 7 7 7 4 Domain of unknown function (DUF4399) Beta_helix PF13229.1 gi|148643457|ref|YP_001273970.1| - 1.9e-33 115.4 146.7 1.1e-17 64.2 26.8 9.2 4 3 2 6 6 6 4 Right handed beta helix region NosD PF05048.8 gi|148643457|ref|YP_001273970.1| - 2.2e-23 82.6 133.1 2.1e-11 43.4 35.5 8.3 2 2 5 7 7 7 3 Periplasmic copper-binding protein (NosD) Big_1 PF02369.11 gi|148643457|ref|YP_001273970.1| - 5.4e-14 51.9 48.0 0.0012 18.6 0.3 8.3 6 1 2 8 8 8 5 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|148643457|ref|YP_001273970.1| - 6.9e-13 48.4 21.9 0.00033 20.6 1.0 7.6 7 0 0 7 7 7 5 Carboxypeptidase regulatory-like domain CarboxypepD_reg PF13620.1 gi|148643458|ref|YP_001273971.1| - 2.7e-16 59.3 22.0 1.4e-06 28.2 1.9 4.9 4 0 0 4 4 4 3 Carboxypeptidase regulatory-like domain DUF4399 PF14347.1 gi|148643458|ref|YP_001273971.1| - 9.5e-15 54.3 1.0 3.7e-07 30.0 0.0 3.7 1 1 2 3 3 3 2 Domain of unknown function (DUF4399) Beta_helix PF13229.1 gi|148643458|ref|YP_001273971.1| - 1.2e-06 28.3 34.0 1.2e-06 28.3 23.6 4.4 1 1 2 3 3 3 1 Right handed beta helix region DUF4198 PF10670.4 gi|148643458|ref|YP_001273971.1| - 3.5e-06 27.1 6.1 1.8e-05 24.8 0.2 3.7 4 0 0 4 4 4 1 Domain of unknown function (DUF4198) Cna_B PF05738.8 gi|148643458|ref|YP_001273971.1| - 0.00098 18.8 2.8 0.00098 18.8 1.9 5.6 5 1 0 5 5 5 2 Cna protein B-type domain NosD PF05048.8 gi|148643458|ref|YP_001273971.1| - 0.0016 17.6 14.1 0.0016 17.6 9.8 4.8 2 2 3 5 5 5 2 Periplasmic copper-binding protein (NosD) Pollen_Ole_e_I PF01190.12 gi|148643458|ref|YP_001273971.1| - 0.025 14.3 1.2 0.42 10.4 0.0 3.3 4 0 0 4 4 4 0 Pollen proteins Ole e I like Adeno_E1B_55K PF01696.12 gi|148643458|ref|YP_001273971.1| - 0.044 12.2 1.9 0.13 10.7 0.5 2.0 2 0 0 2 2 2 0 Adenovirus EB1 55K protein / large t-antigen DUF824 PF05688.6 gi|148643458|ref|YP_001273971.1| - 5.6 6.6 9.1 15 5.3 0.3 4.2 5 0 0 5 5 5 0 Salmonella repeat of unknown function (DUF824) Beta_helix PF13229.1 gi|148643459|ref|YP_001273972.1| - 2.1e-21 76.3 42.5 2.1e-21 76.3 29.5 4.9 2 2 3 5 5 5 2 Right handed beta helix region NosD PF05048.8 gi|148643459|ref|YP_001273972.1| - 1.6e-17 63.4 28.5 1.6e-17 63.4 19.8 3.9 2 1 2 4 4 4 2 Periplasmic copper-binding protein (NosD) DUF4399 PF14347.1 gi|148643459|ref|YP_001273972.1| - 0.00018 21.4 0.2 0.0011 18.8 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4399) Ceramidase PF05875.7 gi|148643460|ref|YP_001273973.1| - 0.027 13.5 15.3 0.027 13.6 9.9 1.5 1 1 0 1 1 1 0 Ceramidase DUF2162 PF09930.4 gi|148643460|ref|YP_001273973.1| - 0.064 12.3 25.8 0.82 8.7 17.9 1.9 1 1 0 1 1 1 0 Predicted transporter (DUF2162) Acyl_transf_3 PF01757.17 gi|148643460|ref|YP_001273973.1| - 5.8 5.6 27.5 10 4.8 19.1 1.3 1 1 0 1 1 1 0 Acyltransferase family MotA_ExbB PF01618.11 gi|148643461|ref|YP_001273974.1| - 3.8e-09 36.2 0.3 3.8e-09 36.2 0.2 1.5 2 0 0 2 2 2 1 MotA/TolQ/ExbB proton channel family Trep_Strep PF09605.5 gi|148643461|ref|YP_001273974.1| - 0.13 11.9 4.0 0.27 10.8 0.3 2.2 2 0 0 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF2149 PF09919.4 gi|148643462|ref|YP_001273975.1| - 4.5e-14 52.3 4.3 3.4e-13 49.5 3.0 1.9 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) Form_Nir_trans PF01226.12 gi|148643463|ref|YP_001273976.1| - 6.7e-86 287.2 31.9 7.5e-86 287.0 22.1 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter Molybdopterin PF00384.17 gi|148643464|ref|YP_001273977.1| - 1.1e-94 317.7 0.0 1.3e-94 317.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|148643464|ref|YP_001273977.1| - 1.1e-24 86.3 0.0 2.1e-24 85.4 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|148643464|ref|YP_001273977.1| - 1.2e-23 82.7 0.6 2.1e-23 81.8 0.4 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain FrhB_FdhB_C PF04432.8 gi|148643465|ref|YP_001273978.1| - 2.7e-33 114.6 0.1 2.7e-33 114.6 0.1 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|148643465|ref|YP_001273978.1| - 3.5e-23 81.2 0.0 7.3e-23 80.2 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|148643465|ref|YP_001273978.1| - 1.3e-07 31.5 20.5 1.3e-07 31.5 14.2 2.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148643465|ref|YP_001273978.1| - 0.00036 20.0 21.8 0.0027 17.2 4.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|148643465|ref|YP_001273978.1| - 0.00055 19.6 11.3 0.0014 18.3 2.0 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148643465|ref|YP_001273978.1| - 0.011 16.0 4.5 0.011 16.0 3.1 4.0 3 1 1 4 4 4 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148643465|ref|YP_001273978.1| - 0.024 14.4 6.6 0.024 14.4 4.5 3.4 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148643465|ref|YP_001273978.1| - 0.26 11.6 27.8 0.1 12.9 15.0 3.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148643465|ref|YP_001273978.1| - 0.64 10.3 29.9 2 8.7 3.2 3.5 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148643465|ref|YP_001273978.1| - 8.1 6.3 22.1 0.11 12.3 2.3 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain Radical_SAM PF04055.16 gi|148643466|ref|YP_001273979.1| - 8.8e-32 110.5 0.4 1.7e-31 109.6 0.2 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|148643466|ref|YP_001273979.1| - 8e-28 96.6 0.2 1.8e-27 95.5 0.2 1.6 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|148643466|ref|YP_001273979.1| - 8.4e-11 42.1 0.2 2.3e-10 40.7 0.1 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|148643466|ref|YP_001273979.1| - 7.1e-08 32.4 0.3 4.7e-07 29.8 0.0 2.3 3 0 0 3 3 3 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|148643466|ref|YP_001273979.1| - 0.39 11.0 0.2 0.39 11.0 0.1 3.0 3 1 1 4 4 4 0 Iron-sulfur cluster-binding domain MobB PF03205.9 gi|148643467|ref|YP_001273980.1| - 1.4e-26 92.8 0.6 3.5e-26 91.5 0.4 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|148643467|ref|YP_001273980.1| - 0.0072 16.8 0.0 0.022 15.2 0.0 1.9 1 1 0 1 1 1 1 Miro-like protein AAA_35 PF14516.1 gi|148643467|ref|YP_001273980.1| - 0.013 14.2 0.2 0.048 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain INCENP_ARK-bind PF03941.10 gi|148643467|ref|YP_001273980.1| - 0.013 15.3 0.1 14 5.6 0.0 3.3 3 0 0 3 3 3 0 Inner centromere protein, ARK binding region CbiA PF01656.18 gi|148643467|ref|YP_001273980.1| - 0.013 14.9 1.2 0.034 13.5 0.1 2.4 1 1 1 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|148643467|ref|YP_001273980.1| - 0.021 14.8 0.0 0.057 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain HAS-barrel PF09378.5 gi|148643467|ref|YP_001273980.1| - 0.021 14.7 6.7 0.11 12.4 0.2 3.5 1 1 2 3 3 3 0 HAS barrel domain PduV-EutP PF10662.4 gi|148643467|ref|YP_001273980.1| - 0.14 11.5 2.4 1.1 8.7 0.0 2.9 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation TK PF00265.13 gi|148643467|ref|YP_001273980.1| - 0.24 10.9 3.0 3.5 7.1 0.1 3.3 1 1 1 2 2 2 0 Thymidine kinase Fer4_21 PF14697.1 gi|148643468|ref|YP_001273981.1| - 8.6e-10 38.3 27.4 4.4e-07 29.6 11.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148643468|ref|YP_001273981.1| - 2.7e-09 36.2 14.9 1.3e-05 24.5 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148643468|ref|YP_001273981.1| - 4.3e-08 33.2 24.9 2.4e-05 24.5 10.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148643468|ref|YP_001273981.1| - 6.2e-08 32.9 12.8 1.1e-07 32.1 8.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain HTH_38 PF13936.1 gi|148643468|ref|YP_001273981.1| - 8.9e-07 28.3 0.0 1.5e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|148643468|ref|YP_001273981.1| - 6.3e-06 26.0 0.0 1e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|148643468|ref|YP_001273981.1| - 9.9e-06 25.0 0.0 1.6e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Fer4_2 PF12797.2 gi|148643468|ref|YP_001273981.1| - 1.1e-05 25.0 15.3 0.0002 21.0 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148643468|ref|YP_001273981.1| - 1.5e-05 25.2 14.2 0.0043 17.4 0.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148643468|ref|YP_001273981.1| - 2.1e-05 24.2 15.3 9.5e-05 22.1 10.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain HTH_3 PF01381.17 gi|148643468|ref|YP_001273981.1| - 2.5e-05 24.0 0.0 4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|148643468|ref|YP_001273981.1| - 0.00014 21.7 0.0 0.00024 21.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fer4_16 PF13484.1 gi|148643468|ref|YP_001273981.1| - 0.0003 21.4 13.9 0.009 16.7 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain HTH_7 PF02796.10 gi|148643468|ref|YP_001273981.1| - 0.00043 20.0 0.0 0.00071 19.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Fer4_8 PF13183.1 gi|148643468|ref|YP_001273981.1| - 0.00047 20.1 16.2 0.00097 19.1 10.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148643468|ref|YP_001273981.1| - 0.0014 18.8 2.6 0.0014 18.8 1.8 2.6 3 0 0 3 3 2 1 4Fe-4S binding domain HTH_26 PF13443.1 gi|148643468|ref|YP_001273981.1| - 0.0016 18.6 0.0 0.0029 17.7 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Fer4_6 PF12837.2 gi|148643468|ref|YP_001273981.1| - 0.0023 17.7 15.3 0.0023 17.7 1.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|148643468|ref|YP_001273981.1| - 0.0025 18.0 17.9 0.027 14.7 1.8 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain CENP-B_N PF04218.8 gi|148643468|ref|YP_001273981.1| - 0.0027 17.0 0.1 0.0075 15.6 0.0 1.7 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Fer4_15 PF13459.1 gi|148643468|ref|YP_001273981.1| - 0.0028 18.1 11.8 0.069 13.7 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain NUMOD1 PF07453.8 gi|148643468|ref|YP_001273981.1| - 0.004 16.9 0.0 0.0084 15.9 0.0 1.6 1 0 0 1 1 1 1 NUMOD1 domain HTH_24 PF13412.1 gi|148643468|ref|YP_001273981.1| - 0.0085 15.4 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|148643468|ref|YP_001273981.1| - 0.0089 15.4 0.0 0.018 14.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_IclR PF09339.5 gi|148643468|ref|YP_001273981.1| - 0.011 15.3 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_40 PF14493.1 gi|148643468|ref|YP_001273981.1| - 0.011 15.9 0.0 0.016 15.3 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|148643468|ref|YP_001273981.1| - 0.012 15.7 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_37 PF13744.1 gi|148643468|ref|YP_001273981.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|148643468|ref|YP_001273981.1| - 0.015 14.9 1.7 0.024 14.3 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_Tnp_ISL3 PF13542.1 gi|148643468|ref|YP_001273981.1| - 0.019 14.1 0.0 0.049 12.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 KorB PF08535.5 gi|148643468|ref|YP_001273981.1| - 0.022 14.9 0.0 0.059 13.5 0.0 1.6 1 1 0 1 1 1 0 KorB domain GerE PF00196.14 gi|148643468|ref|YP_001273981.1| - 0.024 13.9 0.0 0.055 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family MarR_2 PF12802.2 gi|148643468|ref|YP_001273981.1| - 0.038 13.6 0.0 0.058 13.0 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_31 PF13560.1 gi|148643468|ref|YP_001273981.1| - 0.051 13.7 0.0 0.078 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|148643468|ref|YP_001273981.1| - 0.062 12.6 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_4 PF13613.1 gi|148643468|ref|YP_001273981.1| - 0.07 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Phage_CI_repr PF07022.8 gi|148643468|ref|YP_001273981.1| - 0.092 12.8 0.0 0.11 12.5 0.0 1.4 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|148643468|ref|YP_001273981.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_10 PF04967.7 gi|148643468|ref|YP_001273981.1| - 0.15 11.6 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Fer4_13 PF13370.1 gi|148643468|ref|YP_001273981.1| - 0.23 11.8 19.3 0.14 12.5 1.8 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|148643468|ref|YP_001273981.1| - 0.33 11.6 19.9 0.18 12.4 2.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|148643469|ref|YP_001273982.1| - 2.3e-53 175.7 86.0 2.1e-08 33.3 2.3 8.5 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148643469|ref|YP_001273982.1| - 1.4e-37 127.8 69.7 5.7e-10 39.4 7.3 6.4 4 3 4 8 8 8 8 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148643469|ref|YP_001273982.1| - 2.1e-34 117.0 66.0 2.1e-09 37.0 7.5 6.8 4 1 3 7 7 7 7 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148643469|ref|YP_001273982.1| - 8.3e-32 108.8 66.7 2.2e-10 40.2 7.4 6.2 3 1 4 7 7 7 7 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148643469|ref|YP_001273982.1| - 8.3e-31 106.0 69.9 4.3e-08 33.2 8.3 6.4 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148643469|ref|YP_001273982.1| - 2e-29 100.1 87.7 5.2e-05 22.9 0.7 8.6 9 0 0 9 9 8 8 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148643469|ref|YP_001273982.1| - 1.2e-26 93.1 58.4 4.1e-07 30.6 1.4 7.4 6 2 1 7 7 7 7 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|148643469|ref|YP_001273982.1| - 6.7e-23 80.4 65.0 4.4e-06 26.6 6.6 5.5 2 2 5 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148643469|ref|YP_001273982.1| - 1e-21 75.4 82.7 0.00027 20.6 2.6 8.9 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148643469|ref|YP_001273982.1| - 1.5e-14 54.1 62.9 0.025 15.0 0.4 8.3 7 1 1 8 8 8 7 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148643469|ref|YP_001273982.1| - 6.1e-14 52.1 66.2 3.1e-05 24.2 2.9 6.9 3 2 6 9 9 9 8 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148643469|ref|YP_001273982.1| - 2.9e-11 42.7 81.8 0.0021 18.2 1.7 8.9 9 0 0 9 9 9 5 4Fe-4S binding domain Fer4_15 PF13459.1 gi|148643469|ref|YP_001273982.1| - 2.8e-08 34.2 74.5 0.2 12.2 0.6 8.8 7 2 1 8 8 8 7 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|148643469|ref|YP_001273982.1| - 0.00014 22.2 110.4 0.07 13.7 4.5 8.9 9 0 0 9 9 9 7 4Fe-4S binding domain Fer4_11 PF13247.1 gi|148643469|ref|YP_001273982.1| - 0.00062 19.6 48.5 0.28 11.1 6.3 5.9 1 1 3 6 6 6 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|148643469|ref|YP_001273982.1| - 0.0022 18.3 84.4 1.8 8.9 1.1 8.6 8 0 0 8 8 8 6 4Fe-4S single cluster domain Fer4 PF00037.22 gi|148643470|ref|YP_001273983.1| - 4.1e-17 60.9 11.7 1.9e-08 33.5 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148643470|ref|YP_001273983.1| - 4.5e-13 49.3 20.1 1.2e-09 38.3 6.8 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148643470|ref|YP_001273983.1| - 3.3e-12 45.7 11.6 2.4e-07 30.3 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|148643470|ref|YP_001273983.1| - 1.1e-10 40.7 11.3 4e-06 26.4 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148643470|ref|YP_001273983.1| - 6.3e-10 38.6 20.5 2.8e-08 33.4 7.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148643470|ref|YP_001273983.1| - 7.9e-10 38.8 7.5 1.7e-09 37.8 5.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148643470|ref|YP_001273983.1| - 1.4e-09 37.6 9.4 6.7e-06 25.8 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148643470|ref|YP_001273983.1| - 3.7e-08 33.2 4.9 5.1e-08 32.8 3.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148643470|ref|YP_001273983.1| - 2.5e-07 30.4 12.5 0.00012 22.0 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148643470|ref|YP_001273983.1| - 1e-06 29.4 33.1 0.00015 22.4 8.5 2.0 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|148643470|ref|YP_001273983.1| - 5.8e-06 26.5 6.8 2e-05 24.8 4.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|148643470|ref|YP_001273983.1| - 8e-06 26.0 19.0 0.0014 19.0 4.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|148643470|ref|YP_001273983.1| - 3.4e-05 24.1 8.4 0.0035 17.7 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|148643470|ref|YP_001273983.1| - 0.00037 20.8 11.6 0.013 15.9 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|148643470|ref|YP_001273983.1| - 0.0019 18.7 11.6 0.0052 17.3 0.3 2.7 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|148643470|ref|YP_001273983.1| - 0.039 13.8 3.2 2.7 7.9 0.1 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|148643470|ref|YP_001273983.1| - 0.54 9.9 5.4 1.3 8.6 0.8 2.1 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MTHFR_C PF12225.3 gi|148643470|ref|YP_001273983.1| - 4.4 6.8 10.0 2.2 7.8 0.9 2.2 1 1 1 2 2 2 0 Methylene-tetrahydrofolate reductase C terminal Molydop_binding PF01568.16 gi|148643471|ref|YP_001273984.1| - 3.1e-14 52.7 0.0 4e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|148643471|ref|YP_001273984.1| - 0.021 14.7 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Molybdopterin PF00384.17 gi|148643472|ref|YP_001273985.1| - 5.6e-20 71.4 0.0 3.5e-18 65.5 0.0 2.1 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Amidohydro_3 PF07969.6 gi|148643473|ref|YP_001273986.1| - 3.1e-54 184.7 0.0 3.7e-54 184.5 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|148643473|ref|YP_001273986.1| - 5.9e-09 35.6 0.8 1.2e-07 31.4 0.1 2.7 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|148643473|ref|YP_001273986.1| - 0.00012 22.1 1.6 0.24 11.4 0.1 2.6 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|148643473|ref|YP_001273986.1| - 0.00026 20.7 0.1 0.19 11.3 0.0 2.7 3 0 0 3 3 3 2 Amidohydrolase family GXGXG PF01493.14 gi|148643474|ref|YP_001273987.1| - 7.6e-32 109.9 19.3 2.5e-27 95.2 10.7 2.4 1 1 1 2 2 2 2 GXGXG motif DUF2097 PF09870.4 gi|148643475|ref|YP_001273988.1| - 3.3e-31 107.1 5.1 3.8e-31 106.9 3.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2097) DUF2097 PF09870.4 gi|148643476|ref|YP_001273989.1| - 1.1e-32 111.8 0.5 1.3e-32 111.7 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2097) DUF128 PF01995.11 gi|148643477|ref|YP_001273990.1| - 6.6e-149 493.2 12.0 2.3e-81 272.2 2.1 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|148643477|ref|YP_001273990.1| - 5.2e-26 90.1 3.5 5.9e-26 89.9 1.1 2.2 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.14 gi|148643477|ref|YP_001273990.1| - 0.0048 16.3 0.0 0.01 15.2 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S19e Gln-synt_C PF00120.19 gi|148643478|ref|YP_001273991.1| - 1.5e-92 309.4 0.0 1.9e-92 309.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|148643478|ref|YP_001273991.1| - 1.5e-26 91.7 0.1 2.7e-26 90.9 0.1 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DDE_Tnp_IS66 PF03050.9 gi|148643479|ref|YP_001273992.1| - 4.5e-08 32.6 3.0 2.4e-07 30.2 2.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family Zn_Tnp_IS1595 PF12760.2 gi|148643479|ref|YP_001273992.1| - 0.00061 19.5 2.0 0.0015 18.2 1.4 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148643479|ref|YP_001273992.1| - 0.03 13.6 1.7 0.28 10.5 1.1 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|148643479|ref|YP_001273992.1| - 0.063 13.2 3.8 3.5 7.6 1.0 2.8 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|148643479|ref|YP_001273992.1| - 0.098 12.9 0.2 0.31 11.3 0.1 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|148643479|ref|YP_001273992.1| - 0.33 10.6 4.6 6 6.5 3.2 2.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|148643479|ref|YP_001273992.1| - 0.68 10.0 9.3 0.53 10.3 0.4 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TetR_C_8 PF14278.1 gi|148643479|ref|YP_001273992.1| - 1.3 9.4 6.9 0.75 10.2 0.5 3.6 2 1 0 3 3 3 0 Transcriptional regulator C-terminal region Transposase_mut PF00872.13 gi|148643479|ref|YP_001273992.1| - 4.1 5.8 7.2 25 3.2 2.6 2.9 2 1 1 3 3 3 0 Transposase, Mutator family UvrD_C PF13361.1 gi|148643480|ref|YP_001273993.1| - 1.1e-17 64.5 15.1 7.6e-13 48.6 0.0 3.2 2 2 1 3 3 3 2 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.16 gi|148643480|ref|YP_001273993.1| - 8.8e-17 61.3 9.6 8.8e-17 61.3 6.6 3.0 2 2 0 2 2 2 1 UvrD/REP helicase N-terminal domain zf-C4_Topoisom PF01396.14 gi|148643480|ref|YP_001273993.1| - 8.3e-15 54.0 16.4 1.4e-10 40.5 3.8 3.9 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger UvrD_C_2 PF13538.1 gi|148643480|ref|YP_001273993.1| - 5.3e-08 32.9 0.1 2.1e-07 31.0 0.1 2.0 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|148643480|ref|YP_001273993.1| - 1.9e-05 24.3 0.2 0.0042 16.6 0.0 2.9 1 1 1 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_12 PF13087.1 gi|148643480|ref|YP_001273993.1| - 0.00037 19.9 0.3 0.00037 19.9 0.2 1.6 2 0 0 2 2 2 1 AAA domain DNA_ligase_ZBD PF03119.11 gi|148643480|ref|YP_001273993.1| - 0.0012 18.4 6.8 0.12 12.1 0.3 3.5 3 0 0 3 3 3 1 NAD-dependent DNA ligase C4 zinc finger domain zf-TFIIB PF13453.1 gi|148643480|ref|YP_001273993.1| - 0.01 15.0 6.7 0.36 10.0 0.5 3.5 3 0 0 3 3 3 0 Transcription factor zinc-finger Auto_anti-p27 PF06677.7 gi|148643480|ref|YP_001273993.1| - 0.011 15.4 5.1 0.1 12.3 0.2 3.5 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) AAA_22 PF13401.1 gi|148643480|ref|YP_001273993.1| - 0.09 12.9 0.1 0.34 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|148643480|ref|YP_001273993.1| - 0.11 12.5 5.4 0.11 12.5 1.6 2.2 2 0 0 2 2 2 0 DnaJ central domain zf-ribbon_3 PF13248.1 gi|148643480|ref|YP_001273993.1| - 0.26 10.5 8.1 0.39 9.9 0.9 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|148643480|ref|YP_001273993.1| - 0.6 10.1 5.0 3.5 7.6 0.3 3.4 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|148643480|ref|YP_001273993.1| - 0.97 9.0 7.9 0.15 11.5 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|148643480|ref|YP_001273993.1| - 1.6 8.6 6.0 18 5.2 0.4 3.2 2 1 1 3 3 3 0 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|148643480|ref|YP_001273993.1| - 1.7 8.3 5.8 7.8 6.2 0.1 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS DUF2207 PF09972.4 gi|148643481|ref|YP_001273994.1| - 3.4e-133 444.9 16.8 4.1e-133 444.6 11.6 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) Unstab_antitox PF09720.5 gi|148643481|ref|YP_001273994.1| - 0.097 12.3 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative addiction module component Arch_flagellin PF01917.11 gi|148643481|ref|YP_001273994.1| - 0.14 11.7 2.8 0.61 9.6 2.0 1.9 2 1 0 2 2 2 0 Archaebacterial flagellin YrhK PF14145.1 gi|148643481|ref|YP_001273994.1| - 1.3 8.7 7.8 0.3 10.7 1.3 2.6 2 0 0 2 2 2 0 YrhK-like protein LemA PF04011.7 gi|148643482|ref|YP_001273995.1| - 3.8e-67 225.0 1.6 4.5e-67 224.7 1.1 1.0 1 0 0 1 1 1 1 LemA family Prominin PF05478.6 gi|148643482|ref|YP_001273995.1| - 0.0021 15.7 0.1 0.0025 15.4 0.1 1.1 1 0 0 1 1 1 1 Prominin DUF4419 PF14388.1 gi|148643482|ref|YP_001273995.1| - 0.013 14.7 0.0 0.016 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4419) Spc7 PF08317.6 gi|148643482|ref|YP_001273995.1| - 0.023 13.3 0.3 0.036 12.7 0.1 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein ODV-E18 PF10717.4 gi|148643482|ref|YP_001273995.1| - 0.03 13.7 1.6 0.03 13.7 1.1 1.7 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 FtsH_ext PF06480.10 gi|148643482|ref|YP_001273995.1| - 0.045 13.9 0.0 0.084 13.0 0.0 1.4 1 1 0 1 1 1 0 FtsH Extracellular DUF3139 PF11337.3 gi|148643482|ref|YP_001273995.1| - 0.33 11.2 2.7 2.8 8.2 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) DUF2116 PF09889.4 gi|148643482|ref|YP_001273995.1| - 4.7 7.0 6.2 9.8 6.0 4.3 1.5 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ppx-GppA PF02541.11 gi|148643483|ref|YP_001273996.1| - 2.4e-41 141.7 0.1 2.8e-41 141.6 0.0 1.0 1 0 0 1 1 1 1 Ppx/GppA phosphatase family FtsA PF14450.1 gi|148643483|ref|YP_001273996.1| - 3.4e-05 23.6 0.3 0.04 13.7 0.0 3.0 2 1 1 3 3 3 2 Cell division protein FtsA PP_kinase_C PF13090.1 gi|148643484|ref|YP_001273997.1| - 2.1e-141 470.6 4.3 2.9e-141 470.1 3.0 1.1 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|148643484|ref|YP_001273997.1| - 3.2e-51 173.7 0.8 6.1e-51 172.8 0.6 1.5 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|148643484|ref|YP_001273997.1| - 7.1e-32 109.7 0.3 3.3e-31 107.5 0.0 2.3 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|148643484|ref|YP_001273997.1| - 7.3e-11 41.9 1.2 0.00014 21.6 0.1 2.6 2 0 0 2 2 2 2 PLD-like domain Ribosomal_S13 PF00416.17 gi|148643485|ref|YP_001273998.1| - 4.3e-31 107.5 0.3 5.1e-31 107.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 S4 PF01479.20 gi|148643486|ref|YP_001273999.1| - 1.7e-14 52.9 0.0 4.5e-14 51.5 0.0 1.8 1 1 1 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|148643486|ref|YP_001273999.1| - 0.00041 20.6 2.3 0.0007 19.9 1.2 1.8 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|148643487|ref|YP_001274000.1| - 2.1e-37 127.6 0.5 2.6e-37 127.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|148643488|ref|YP_001274001.1| - 6.3e-26 90.7 0.0 1.5e-25 89.5 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|148643488|ref|YP_001274001.1| - 2.2e-13 49.1 0.0 3e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_7 PF12838.2 gi|148643488|ref|YP_001274001.1| - 0.00015 22.0 2.4 0.00037 20.7 1.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148643488|ref|YP_001274001.1| - 0.00035 20.7 1.1 0.001 19.3 0.8 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148643488|ref|YP_001274001.1| - 0.0073 16.0 3.5 0.016 14.9 2.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain RNA_pol_L_2 PF13656.1 gi|148643488|ref|YP_001274001.1| - 0.026 13.9 0.0 0.065 12.6 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.22 gi|148643488|ref|YP_001274001.1| - 0.049 13.2 5.8 0.86 9.3 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148643488|ref|YP_001274001.1| - 0.14 12.9 3.5 1.8 9.3 0.1 2.5 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|148643488|ref|YP_001274001.1| - 1.2 9.6 5.8 23 5.6 1.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|148643488|ref|YP_001274001.1| - 1.3 9.1 5.9 3.1 7.8 0.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Ribosomal_L18e PF00828.14 gi|148643489|ref|YP_001274002.1| - 5e-16 59.2 0.3 8.4e-16 58.5 0.2 1.4 1 1 0 1 1 1 1 Ribosomal protein L18e/L15 DUF1829 PF08862.5 gi|148643489|ref|YP_001274002.1| - 0.032 14.5 1.2 0.21 11.9 0.7 2.3 2 1 0 2 2 2 0 Domain of unknown function DUF1829 Ribosomal_L13 PF00572.13 gi|148643490|ref|YP_001274003.1| - 7.1e-25 87.5 0.0 8.3e-25 87.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|148643491|ref|YP_001274004.1| - 9.2e-35 119.5 0.1 1e-34 119.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|148643492|ref|YP_001274005.1| - 8.5e-26 89.7 0.2 9e-26 89.6 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|148643492|ref|YP_001274005.1| - 0.04 14.0 0.1 0.053 13.6 0.0 1.2 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) RNA_pol_Rpb6 PF01192.17 gi|148643493|ref|YP_001274006.1| - 6.3e-16 57.8 0.0 7.1e-16 57.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.17 gi|148643495|ref|YP_001274008.1| - 9.6e-79 264.4 0.4 1.2e-78 264.1 0.3 1.0 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain MR_MLE_C PF13378.1 gi|148643495|ref|YP_001274008.1| - 0.0075 16.2 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|148643495|ref|YP_001274008.1| - 0.031 14.8 0.0 0.058 13.9 0.0 1.6 1 1 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Fer4_7 PF12838.2 gi|148643496|ref|YP_001274009.1| - 1e-09 38.6 26.1 2.7e-08 34.0 10.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148643496|ref|YP_001274009.1| - 2.2e-09 36.7 20.8 8.3e-07 28.6 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|148643496|ref|YP_001274009.1| - 7e-09 34.9 22.6 7.2e-05 22.2 6.3 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148643496|ref|YP_001274009.1| - 4.9e-08 32.6 13.3 7.5e-08 32.0 9.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148643496|ref|YP_001274009.1| - 2.2e-05 24.0 16.3 0.0031 17.3 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148643496|ref|YP_001274009.1| - 4.3e-05 23.6 15.6 7.7e-05 22.8 10.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148643496|ref|YP_001274009.1| - 5.9e-05 22.8 17.2 0.00012 21.8 11.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148643496|ref|YP_001274009.1| - 8.6e-05 22.5 17.4 0.0013 18.8 2.2 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148643496|ref|YP_001274009.1| - 0.0018 18.9 15.3 0.25 12.1 2.3 2.2 1 1 3 4 4 4 4 4Fe-4S double cluster binding domain Fer4_11 PF13247.1 gi|148643496|ref|YP_001274009.1| - 0.0039 17.0 7.9 0.0049 16.7 5.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|148643496|ref|YP_001274009.1| - 0.0088 16.5 17.2 0.12 13.0 3.3 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain RNA_pol_Rpb2_5 PF04567.12 gi|148643496|ref|YP_001274009.1| - 0.023 14.6 1.1 0.033 14.1 0.8 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 5 Fer4_18 PF13746.1 gi|148643496|ref|YP_001274009.1| - 0.029 14.7 15.2 0.037 14.4 1.6 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148643496|ref|YP_001274009.1| - 0.031 14.2 16.0 0.81 9.7 2.4 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|148643496|ref|YP_001274009.1| - 0.13 12.8 18.6 39 4.9 12.0 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|148643496|ref|YP_001274009.1| - 0.41 11.0 15.0 2 8.8 1.5 2.2 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|148643496|ref|YP_001274009.1| - 0.64 10.4 14.8 2.6 8.4 0.6 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Ribosomal_S2 PF00318.15 gi|148643497|ref|YP_001274010.1| - 1.4e-42 145.3 0.0 3.7e-39 134.1 0.0 2.0 1 1 0 1 1 1 1 Ribosomal protein S2 Isochorismatase PF00857.15 gi|148643497|ref|YP_001274010.1| - 0.042 13.7 0.0 0.12 12.3 0.0 1.7 1 1 1 2 2 2 0 Isochorismatase family Memo PF01875.12 gi|148643498|ref|YP_001274011.1| - 5.8e-79 264.8 0.0 6.6e-79 264.6 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|148643498|ref|YP_001274011.1| - 0.00037 19.5 0.0 0.00045 19.3 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GHMP_kinases_N PF00288.21 gi|148643499|ref|YP_001274012.1| - 3.9e-18 65.2 0.2 1.1e-17 63.8 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|148643499|ref|YP_001274012.1| - 4.1e-16 58.9 0.4 1.5e-15 57.1 0.1 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal AA_kinase PF00696.23 gi|148643500|ref|YP_001274013.1| - 2.6e-44 151.5 0.1 3e-44 151.3 0.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family Asparaginase PF00710.15 gi|148643500|ref|YP_001274013.1| - 0.11 11.3 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 Asparaginase FMN_dh PF01070.13 gi|148643501|ref|YP_001274014.1| - 1e-33 116.6 0.0 1.2e-21 77.0 0.0 2.3 1 1 1 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|148643501|ref|YP_001274014.1| - 1.4e-07 30.7 2.4 0.00041 19.3 1.1 3.2 2 2 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|148643501|ref|YP_001274014.1| - 4.9e-06 25.7 0.2 7.4e-06 25.1 0.1 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase DUF561 PF04481.7 gi|148643501|ref|YP_001274014.1| - 6.3e-06 25.3 0.0 3.5e-05 22.8 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF561) NMO PF03060.10 gi|148643501|ref|YP_001274014.1| - 1.2e-05 24.6 0.2 0.0001 21.5 0.2 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|148643501|ref|YP_001274014.1| - 0.0013 18.0 0.2 0.12 11.6 0.0 2.3 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|148643501|ref|YP_001274014.1| - 0.0051 15.9 0.6 0.072 12.1 0.2 2.6 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG SOR_SNZ PF01680.12 gi|148643501|ref|YP_001274014.1| - 0.16 11.5 0.7 1.1 8.8 0.1 2.0 1 1 1 2 2 2 0 SOR/SNZ family DHO_dh PF01180.16 gi|148643501|ref|YP_001274014.1| - 0.16 10.8 0.1 0.16 10.8 0.1 1.9 3 0 0 3 3 3 0 Dihydroorotate dehydrogenase Lactamase_B PF00753.22 gi|148643502|ref|YP_001274015.1| - 1e-18 67.6 0.5 2e-18 66.7 0.4 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|148643502|ref|YP_001274015.1| - 2.9e-10 39.8 0.4 6.8e-10 38.5 0.3 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|148643502|ref|YP_001274015.1| - 1.2e-07 31.4 0.3 1.2e-07 31.4 0.2 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RPEL PF02755.10 gi|148643502|ref|YP_001274015.1| - 0.27 10.6 2.0 1.8 8.0 0.0 3.3 3 0 0 3 3 3 0 RPEL repeat polyprenyl_synt PF00348.12 gi|148643503|ref|YP_001274016.1| - 6.8e-75 251.2 2.9 8e-75 251.0 2.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF2142 PF09913.4 gi|148643504|ref|YP_001274017.1| - 5.6e-93 311.7 31.2 5.6e-93 311.7 21.6 1.9 3 0 0 3 3 3 1 Predicted membrane protein (DUF2142) DUF3290 PF11694.3 gi|148643504|ref|YP_001274017.1| - 0.085 12.5 0.3 0.085 12.5 0.2 3.7 4 1 1 5 5 5 0 Protein of unknown function (DUF3290) TrmB PF01978.14 gi|148643505|ref|YP_001274018.1| - 7.8e-21 73.5 0.5 3.6e-20 71.4 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|148643505|ref|YP_001274018.1| - 0.011 15.8 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.12 gi|148643505|ref|YP_001274018.1| - 0.031 13.7 0.5 0.22 11.0 0.3 2.3 1 1 0 1 1 1 0 TFIIE alpha subunit PadR PF03551.9 gi|148643505|ref|YP_001274018.1| - 0.039 13.7 0.0 0.097 12.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family UPF0122 PF04297.9 gi|148643505|ref|YP_001274018.1| - 8.6 6.4 10.0 0.4 10.7 0.2 3.1 3 1 0 3 3 3 0 Putative helix-turn-helix protein, YlxM / p13 like Prismane PF03063.15 gi|148643506|ref|YP_001274019.1| - 1.5e-115 386.5 0.1 7.4e-99 331.4 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Cupin_2 PF07883.6 gi|148643507|ref|YP_001274020.1| - 1.1e-08 34.4 0.0 1.4e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|148643507|ref|YP_001274020.1| - 0.0001 21.9 0.0 0.00012 21.7 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain EutQ PF06249.7 gi|148643507|ref|YP_001274020.1| - 0.0049 16.4 0.0 0.0053 16.3 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ CENP-C_C PF11699.3 gi|148643507|ref|YP_001274020.1| - 0.036 14.0 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 Mif2/CENP-C like MannoseP_isomer PF01050.13 gi|148643507|ref|YP_001274020.1| - 0.076 12.6 0.0 0.095 12.3 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Methyltransf_31 PF13847.1 gi|148643508|ref|YP_001274021.1| - 9.5e-17 60.9 0.6 1.8e-16 60.1 0.2 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148643508|ref|YP_001274021.1| - 7.3e-13 49.0 0.0 1.5e-12 48.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|148643508|ref|YP_001274021.1| - 3.7e-11 43.3 0.0 8.1e-11 42.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|148643508|ref|YP_001274021.1| - 6.6e-11 42.5 1.2 1e-10 41.9 0.0 1.9 3 0 0 3 3 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148643508|ref|YP_001274021.1| - 1.9e-10 40.6 0.0 2.8e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|148643508|ref|YP_001274021.1| - 1.9e-09 37.8 0.0 4.1e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|148643508|ref|YP_001274021.1| - 2.2e-08 33.6 0.0 3.4e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|148643508|ref|YP_001274021.1| - 4.1e-08 32.6 0.0 7.1e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family GidB PF02527.10 gi|148643508|ref|YP_001274021.1| - 7.4e-08 31.7 0.5 1.2e-07 31.0 0.0 1.6 2 0 0 2 2 2 1 rRNA small subunit methyltransferase G TehB PF03848.9 gi|148643508|ref|YP_001274021.1| - 1.5e-06 27.5 0.1 2.6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|148643508|ref|YP_001274021.1| - 2.8e-06 26.5 0.0 4.7e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|148643508|ref|YP_001274021.1| - 1.4e-05 24.2 1.0 2.7e-05 23.3 0.1 1.8 1 1 1 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|148643508|ref|YP_001274021.1| - 2.4e-05 23.4 0.0 4.8e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|148643508|ref|YP_001274021.1| - 2.7e-05 23.0 0.1 4.4e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DREV PF05219.7 gi|148643508|ref|YP_001274021.1| - 0.00043 19.2 0.2 0.00083 18.3 0.0 1.6 2 0 0 2 2 2 1 DREV methyltransferase Methyltransf_26 PF13659.1 gi|148643508|ref|YP_001274021.1| - 0.00082 19.3 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|148643508|ref|YP_001274021.1| - 0.0019 17.6 0.0 0.0028 17.0 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|148643508|ref|YP_001274021.1| - 0.0026 17.3 0.0 0.0038 16.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FmrO PF07091.6 gi|148643508|ref|YP_001274021.1| - 0.0046 15.9 0.0 0.006 15.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) NodS PF05401.6 gi|148643508|ref|YP_001274021.1| - 0.0085 15.4 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.1 gi|148643508|ref|YP_001274021.1| - 0.021 14.5 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|148643508|ref|YP_001274021.1| - 0.028 13.9 0.0 0.053 13.0 0.0 1.6 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DOT1 PF08123.8 gi|148643508|ref|YP_001274021.1| - 0.073 12.3 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Histone methylation protein DOT1 PrmA PF06325.8 gi|148643508|ref|YP_001274021.1| - 0.093 11.8 0.1 0.093 11.8 0.1 2.4 3 0 0 3 3 3 0 Ribosomal protein L11 methyltransferase (PrmA) TPR_2 PF07719.12 gi|148643509|ref|YP_001274022.1| - 8.2e-09 34.7 9.4 0.0058 16.4 0.0 5.6 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|148643509|ref|YP_001274022.1| - 1.3e-07 31.0 11.2 5.3e-06 25.9 0.0 4.3 4 1 1 5 5 5 2 TPR repeat Apc3 PF12895.2 gi|148643509|ref|YP_001274022.1| - 1.5e-07 31.4 11.5 4.9e-05 23.3 0.8 3.7 3 1 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|148643509|ref|YP_001274022.1| - 9.1e-07 28.9 4.2 17 6.1 0.1 6.3 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|148643509|ref|YP_001274022.1| - 1.1e-06 28.8 6.2 0.12 12.7 0.0 4.6 4 1 1 5 5 4 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|148643509|ref|YP_001274022.1| - 2.6e-06 27.2 4.0 0.0055 16.6 0.1 3.7 3 2 1 4 4 4 2 Tetratricopeptide repeat DUF3808 PF10300.4 gi|148643509|ref|YP_001274022.1| - 2.4e-05 23.0 3.9 0.0067 15.0 0.1 3.5 2 1 2 4 4 4 2 Protein of unknown function (DUF3808) TPR_1 PF00515.23 gi|148643509|ref|YP_001274022.1| - 3.2e-05 23.3 15.8 0.022 14.3 0.0 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_21 PF09976.4 gi|148643509|ref|YP_001274022.1| - 7.5e-05 22.7 1.0 0.44 10.4 0.0 3.5 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|148643509|ref|YP_001274022.1| - 0.00016 21.9 0.0 32 5.5 0.0 5.0 4 2 1 5 5 5 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|148643509|ref|YP_001274022.1| - 0.00074 19.1 0.9 1.4 8.9 0.0 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|148643509|ref|YP_001274022.1| - 0.00076 19.0 21.5 0.0068 16.1 0.0 6.2 6 2 0 6 6 6 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|148643509|ref|YP_001274022.1| - 0.0012 19.5 0.0 19 6.0 0.0 4.1 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_17 PF13431.1 gi|148643509|ref|YP_001274022.1| - 0.0025 17.8 7.6 0.65 10.3 0.0 4.9 5 0 0 5 5 4 1 Tetratricopeptide repeat LIP PF03583.9 gi|148643509|ref|YP_001274022.1| - 0.094 11.8 0.0 0.22 10.6 0.0 1.6 1 0 0 1 1 1 0 Secretory lipase Phage_min_cap2 PF06152.6 gi|148643509|ref|YP_001274022.1| - 0.9 8.4 6.5 0.57 9.0 1.3 2.2 2 0 0 2 2 2 0 Phage minor capsid protein 2 YfdX PF10938.3 gi|148643509|ref|YP_001274022.1| - 2.3 7.8 6.9 4.4 6.9 0.0 3.9 4 1 1 5 5 5 0 YfdX protein Aldo_ket_red PF00248.16 gi|148643510|ref|YP_001274023.1| - 4.8e-37 127.3 0.0 1.2e-36 125.9 0.0 1.5 1 1 1 2 2 2 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|148643510|ref|YP_001274023.1| - 3.2e-08 33.7 12.8 7.7e-08 32.5 8.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|148643510|ref|YP_001274023.1| - 0.00038 20.0 0.6 0.00038 20.0 0.4 2.0 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_10 PF13237.1 gi|148643510|ref|YP_001274023.1| - 0.00091 18.9 16.3 0.0021 17.8 10.6 2.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148643510|ref|YP_001274023.1| - 0.0016 18.8 2.8 0.63 10.4 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148643510|ref|YP_001274023.1| - 0.0025 18.5 4.0 0.31 11.8 0.2 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|148643510|ref|YP_001274023.1| - 0.0043 17.0 11.5 0.0099 15.8 8.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148643510|ref|YP_001274023.1| - 0.013 15.7 16.5 0.073 13.3 11.4 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148643510|ref|YP_001274023.1| - 0.029 14.2 2.4 0.029 14.2 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|148643510|ref|YP_001274023.1| - 0.16 11.5 15.3 0.12 12.0 2.0 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|148643510|ref|YP_001274023.1| - 0.18 11.8 12.0 1.1 9.3 1.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148643510|ref|YP_001274023.1| - 0.25 11.7 13.8 0.49 10.8 2.5 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain YyzF PF14116.1 gi|148643510|ref|YP_001274023.1| - 0.47 10.4 6.2 1.3 9.0 0.1 2.7 2 0 0 2 2 2 0 YyzF-like protein Fer4_3 PF12798.2 gi|148643510|ref|YP_001274023.1| - 0.88 10.2 10.8 0.23 12.1 1.3 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148643510|ref|YP_001274023.1| - 1.1 9.6 15.7 4.4 7.7 10.9 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain TPR_12 PF13424.1 gi|148643511|ref|YP_001274024.1| - 4.2e-15 55.4 6.8 2.3e-09 37.0 0.1 4.3 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|148643511|ref|YP_001274024.1| - 9.2e-15 53.5 18.3 4.7e-06 25.9 0.2 6.3 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|148643511|ref|YP_001274024.1| - 5.4e-14 50.9 19.3 0.00028 20.5 0.2 5.9 5 1 1 6 6 5 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|148643511|ref|YP_001274024.1| - 1.2e-12 47.2 16.7 1.8e-08 33.8 0.7 4.8 3 1 2 5 5 5 3 TPR repeat TPR_16 PF13432.1 gi|148643511|ref|YP_001274024.1| - 4.6e-10 39.8 0.6 0.00039 21.0 0.1 4.5 3 1 0 4 4 4 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|148643511|ref|YP_001274024.1| - 3e-09 36.8 15.5 5e-05 23.3 0.9 3.7 2 1 2 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|148643511|ref|YP_001274024.1| - 8.8e-09 35.5 10.6 0.017 15.4 0.2 5.1 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|148643511|ref|YP_001274024.1| - 1.2e-08 34.1 26.2 0.0019 17.8 0.6 6.4 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|148643511|ref|YP_001274024.1| - 5.9e-08 31.9 2.5 0.027 14.2 0.0 4.8 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|148643511|ref|YP_001274024.1| - 2e-07 31.0 7.1 0.47 11.0 0.0 5.2 6 0 0 6 6 4 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|148643511|ref|YP_001274024.1| - 5.3e-07 29.7 0.0 8.3 7.3 0.0 5.1 4 2 2 6 6 5 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|148643511|ref|YP_001274024.1| - 2e-05 24.3 5.6 2.6 7.9 0.0 5.2 4 1 1 5 5 5 2 Fis1 C-terminal tetratricopeptide repeat TPR_9 PF13371.1 gi|148643511|ref|YP_001274024.1| - 2.4e-05 24.1 0.0 5.7 6.8 0.0 4.3 4 1 1 5 5 4 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|148643511|ref|YP_001274024.1| - 8e-05 22.4 0.0 1 9.4 0.0 4.0 4 0 0 4 4 4 1 Tetratricopeptide repeat DUF3856 PF12968.2 gi|148643511|ref|YP_001274024.1| - 0.00011 22.0 0.4 0.058 13.2 0.0 3.8 1 1 4 5 5 5 2 Domain of Unknown Function (DUF3856) TPR_17 PF13431.1 gi|148643511|ref|YP_001274024.1| - 0.00035 20.5 6.1 3.1 8.2 0.0 5.4 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|148643511|ref|YP_001274024.1| - 0.00088 19.2 6.2 0.017 15.0 0.1 3.7 3 1 0 4 4 4 1 Tetratricopeptide repeat TENA_THI-4 PF03070.11 gi|148643511|ref|YP_001274024.1| - 0.019 14.6 1.1 0.043 13.5 0.7 1.6 2 0 0 2 2 2 0 TENA/THI-4/PQQC family MIT PF04212.13 gi|148643511|ref|YP_001274024.1| - 0.08 12.8 11.7 2.3 8.1 0.3 5.0 4 2 1 5 5 5 0 MIT (microtubule interacting and transport) domain DUF2839 PF10999.3 gi|148643511|ref|YP_001274024.1| - 0.1 12.6 0.0 0.36 10.8 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2839) SPOB_a PF14689.1 gi|148643511|ref|YP_001274024.1| - 0.42 10.2 4.3 3.9 7.1 0.0 3.9 5 0 0 5 5 5 0 Sensor_kinase_SpoOB-type, alpha-helical domain Ribosomal_L36e PF01158.13 gi|148643511|ref|YP_001274024.1| - 0.65 9.9 3.7 0.4 10.6 0.3 2.2 2 0 0 2 2 2 0 Ribosomal protein L36e tRNA-synt_1c PF00749.16 gi|148643512|ref|YP_001274025.1| - 2.6e-79 266.1 0.0 2.5e-78 262.9 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|148643512|ref|YP_001274025.1| - 2.9e-28 98.7 0.1 9.2e-28 97.0 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1d PF00750.14 gi|148643512|ref|YP_001274025.1| - 0.045 12.5 0.0 0.077 11.8 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (R) Peptidase_M56 PF05569.6 gi|148643514|ref|YP_001274027.1| - 0.67 8.8 0.0 0.67 8.8 0.0 2.0 3 0 0 3 3 3 0 BlaR1 peptidase M56 Aminotran_1_2 PF00155.16 gi|148643515|ref|YP_001274028.1| - 7.9e-34 117.1 0.0 1.9e-33 115.9 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II MFS_1 PF07690.11 gi|148643519|ref|YP_001274032.1| - 5.8e-63 212.7 53.4 1.8e-50 171.6 23.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|148643519|ref|YP_001274032.1| - 2e-13 49.7 12.8 2e-13 49.7 8.9 2.9 1 1 0 2 2 2 2 Sugar (and other) transporter Fer4 PF00037.22 gi|148643520|ref|YP_001274033.1| - 2.5e-59 194.6 118.7 8.7e-07 28.2 1.3 12.5 13 0 0 13 13 13 12 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148643520|ref|YP_001274033.1| - 3.2e-47 158.6 109.0 1.2e-12 47.9 5.8 7.9 5 2 3 8 8 8 8 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148643520|ref|YP_001274033.1| - 4.1e-38 129.9 99.9 4e-09 37.0 6.5 11.5 9 2 4 13 13 13 13 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|148643520|ref|YP_001274033.1| - 5.9e-38 128.9 115.3 2e-08 34.3 7.4 8.2 4 3 3 9 9 9 9 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148643520|ref|YP_001274033.1| - 9.1e-38 126.5 120.3 2.3e-07 30.3 1.3 12.2 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148643520|ref|YP_001274033.1| - 3.3e-34 116.4 119.1 8.2e-08 31.9 8.9 7.8 2 2 8 10 10 10 10 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|148643520|ref|YP_001274033.1| - 3e-27 92.8 119.0 0.00014 21.6 1.5 12.3 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_8 PF13183.1 gi|148643520|ref|YP_001274033.1| - 5.8e-25 87.0 106.1 1.7e-07 31.1 4.9 8.3 4 2 3 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148643520|ref|YP_001274033.1| - 1.1e-22 79.6 111.2 2e-08 33.9 7.1 8.1 3 2 4 8 8 8 8 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148643520|ref|YP_001274033.1| - 8.6e-21 72.4 120.3 0.0015 18.7 1.5 12.4 12 1 0 12 12 12 10 4Fe-4S binding domain Fer4_3 PF12798.2 gi|148643520|ref|YP_001274033.1| - 3e-18 64.9 145.1 0.014 15.9 2.8 12.3 12 0 0 12 12 12 10 4Fe-4S binding domain Fer4_17 PF13534.1 gi|148643520|ref|YP_001274033.1| - 7.8e-18 64.5 112.0 0.0012 19.1 6.7 11.1 5 4 5 11 11 11 10 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148643520|ref|YP_001274033.1| - 3.2e-12 46.6 109.1 0.0025 18.1 0.2 12.0 8 4 3 11 11 11 7 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|148643520|ref|YP_001274033.1| - 4.8e-11 42.4 70.1 0.00032 20.5 6.2 6.5 4 2 2 6 6 6 4 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|148643520|ref|YP_001274033.1| - 7.2e-08 32.8 96.9 0.0046 17.4 0.2 11.7 10 2 0 10 10 10 6 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|148643520|ref|YP_001274033.1| - 0.0099 16.2 112.7 0.019 15.3 0.6 12.4 11 1 0 11 11 11 6 4Fe-4S single cluster domain FlpD PF02662.11 gi|148643521|ref|YP_001274034.1| - 6.7e-56 187.3 0.1 7.5e-56 187.1 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit FrhB_FdhB_C PF04432.8 gi|148643522|ref|YP_001274035.1| - 5.5e-44 149.4 0.1 5.5e-44 149.4 0.1 2.1 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|148643522|ref|YP_001274035.1| - 9.8e-25 86.2 0.0 1.7e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|148643522|ref|YP_001274035.1| - 1.1e-07 31.7 19.6 2.2e-07 30.7 12.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148643522|ref|YP_001274035.1| - 7.6e-06 26.1 18.5 7.6e-06 26.1 12.8 2.2 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148643522|ref|YP_001274035.1| - 0.00081 19.7 12.9 0.00081 19.7 8.9 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148643522|ref|YP_001274035.1| - 0.002 18.3 22.4 0.0032 17.7 1.7 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148643522|ref|YP_001274035.1| - 0.0022 17.5 15.2 0.0092 15.5 1.8 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|148643522|ref|YP_001274035.1| - 0.0024 17.6 2.0 0.0024 17.6 1.4 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|148643522|ref|YP_001274035.1| - 0.012 15.3 1.8 0.012 15.3 1.3 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148643522|ref|YP_001274035.1| - 0.018 15.4 23.7 0.1 12.9 14.6 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|148643522|ref|YP_001274035.1| - 0.065 13.6 16.6 1.2 9.5 5.3 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Ribosomal_L17 PF01196.14 gi|148643522|ref|YP_001274035.1| - 0.077 13.5 0.0 0.25 11.9 0.0 1.9 1 1 0 1 1 1 0 Ribosomal protein L17 Fer4_4 PF12800.2 gi|148643522|ref|YP_001274035.1| - 1.2 9.6 32.2 0.067 13.5 3.0 3.9 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|148643522|ref|YP_001274035.1| - 4.7 7.1 21.9 2e+02 1.8 6.2 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148643522|ref|YP_001274035.1| - 4.8 7.9 21.4 2.1 9.1 2.1 3.9 2 1 0 4 4 4 0 4Fe-4S double cluster binding domain Molybdop_Fe4S4 PF04879.11 gi|148643523|ref|YP_001274036.1| - 7.5e-11 41.6 2.2 1.7e-10 40.5 1.5 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molybdopterin PF00384.17 gi|148643523|ref|YP_001274036.1| - 4.7e-10 38.7 1.0 2.4e-05 23.2 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase SIS PF01380.17 gi|148643523|ref|YP_001274036.1| - 0.016 14.8 0.1 0.043 13.4 0.1 1.7 1 0 0 1 1 1 0 SIS domain MFS_1 PF07690.11 gi|148643525|ref|YP_001274038.1| - 4e-47 160.6 32.4 4e-47 160.6 22.5 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|148643525|ref|YP_001274038.1| - 7.2e-08 31.4 15.5 7.2e-08 31.4 10.7 2.6 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|148643525|ref|YP_001274038.1| - 7.3e-06 24.6 16.4 7.3e-06 24.6 11.3 3.2 1 1 1 3 3 3 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|148643525|ref|YP_001274038.1| - 0.00027 19.1 3.1 0.00027 19.1 2.1 2.7 2 1 0 2 2 2 1 Transmembrane secretion effector DUF4131 PF13567.1 gi|148643525|ref|YP_001274038.1| - 8.6 5.7 10.7 1.7 8.0 0.0 3.6 3 2 0 3 3 3 0 Domain of unknown function (DUF4131) Adenylsucc_synt PF00709.16 gi|148643528|ref|YP_001274041.1| - 1.4e-93 313.8 1.0 2.9e-44 151.3 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase NMT1_2 PF13379.1 gi|148643529|ref|YP_001274042.1| - 1.2e-47 162.4 0.0 1.5e-47 162.1 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|148643529|ref|YP_001274042.1| - 4.7e-31 108.0 0.4 6.5e-31 107.6 0.3 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|148643529|ref|YP_001274042.1| - 1e-13 51.2 0.0 1.6e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein OpuAC PF04069.7 gi|148643529|ref|YP_001274042.1| - 2e-11 43.7 0.1 3e-11 43.1 0.1 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_3 PF00497.15 gi|148643529|ref|YP_001274042.1| - 9.6e-10 38.0 0.0 1.5e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lipoprotein_9 PF03180.9 gi|148643529|ref|YP_001274042.1| - 1.2e-08 34.1 0.1 1.9e-08 33.5 0.1 1.3 1 0 0 1 1 1 1 NLPA lipoprotein ABC2_membrane_3 PF12698.2 gi|148643529|ref|YP_001274042.1| - 0.00098 18.2 5.8 0.0022 17.1 3.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein SBP_bac_1 PF01547.20 gi|148643529|ref|YP_001274042.1| - 0.0051 16.5 0.9 1.7 8.2 0.0 2.3 1 1 1 2 2 2 2 Bacterial extracellular solute-binding protein VitK2_biosynth PF02621.9 gi|148643529|ref|YP_001274042.1| - 0.0057 15.8 0.0 0.055 12.6 0.0 2.1 2 1 0 2 2 2 1 Menaquinone biosynthesis Claudin_3 PF06653.6 gi|148643529|ref|YP_001274042.1| - 0.12 12.0 0.2 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 Tight junction protein, Claudin-like Pex19 PF04614.7 gi|148643530|ref|YP_001274043.1| - 0.0059 16.2 0.2 0.0098 15.5 0.1 1.4 1 1 0 1 1 1 1 Pex19 protein family Fib_alpha PF08702.5 gi|148643530|ref|YP_001274043.1| - 0.021 14.9 1.9 0.042 13.9 1.1 1.7 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family ERp29 PF07749.7 gi|148643530|ref|YP_001274043.1| - 0.031 14.9 0.2 0.084 13.5 0.0 1.9 2 0 0 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain CagA PF03507.8 gi|148643530|ref|YP_001274043.1| - 0.045 13.6 1.8 0.075 12.8 0.4 1.8 1 1 1 2 2 2 0 CagA exotoxin Hormone_recep PF00104.25 gi|148643530|ref|YP_001274043.1| - 0.08 12.0 0.2 0.18 10.8 0.1 1.5 1 1 0 1 1 1 0 Ligand-binding domain of nuclear hormone receptor Med22 PF06179.7 gi|148643530|ref|YP_001274043.1| - 0.1 12.5 2.0 1.9 8.5 0.1 2.6 2 1 1 3 3 3 0 Surfeit locus protein 5 subunit 22 of Mediator complex XPC-binding PF09280.6 gi|148643530|ref|YP_001274043.1| - 0.11 12.0 1.9 4.3 6.8 0.2 3.1 2 1 0 2 2 2 0 XPC-binding domain DUF816 PF05674.7 gi|148643530|ref|YP_001274043.1| - 0.11 12.1 5.8 0.24 11.1 1.3 2.4 1 1 0 2 2 2 0 Baculovirus protein of unknown function (DUF816) ApoLp-III PF07464.6 gi|148643530|ref|YP_001274043.1| - 0.22 11.5 1.5 8.4 6.4 0.1 2.3 2 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) ER PF01133.12 gi|148643530|ref|YP_001274043.1| - 0.3 10.8 1.9 1.8 8.3 0.3 2.2 1 1 1 2 2 2 0 Enhancer of rudimentary BLOC1_2 PF10046.4 gi|148643530|ref|YP_001274043.1| - 0.81 9.8 5.9 13 6.0 1.4 2.6 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ATP-grasp_5 PF13549.1 gi|148643531|ref|YP_001274044.1| - 4.7e-71 238.5 0.4 8e-71 237.7 0.3 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|148643531|ref|YP_001274044.1| - 2.4e-56 189.1 1.6 1.6e-54 183.2 0.3 3.1 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|148643531|ref|YP_001274044.1| - 8.8e-24 83.9 0.1 3.3e-22 78.8 0.0 2.7 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|148643531|ref|YP_001274044.1| - 4.4e-17 62.3 1.1 4.4e-17 62.3 0.7 3.1 3 0 0 3 3 3 1 CoA binding domain Meth_synt_2 PF01717.13 gi|148643531|ref|YP_001274044.1| - 0.03 13.3 0.2 0.8 8.6 0.1 2.2 2 0 0 2 2 2 0 Cobalamin-independent synthase, Catalytic domain ATP-grasp_4 PF13535.1 gi|148643531|ref|YP_001274044.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain DUF2121 PF09894.4 gi|148643532|ref|YP_001274045.1| - 2.4e-72 242.3 5.9 2.4e-72 242.3 4.1 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2121) Gifsy-2 PF13856.1 gi|148643532|ref|YP_001274045.1| - 0.00043 20.3 0.1 0.00098 19.2 0.1 1.6 1 0 0 1 1 1 1 ATP-binding sugar transporter from pro-phage Lactamase_B_2 PF12706.2 gi|148643533|ref|YP_001274046.1| - 3.1e-20 72.5 0.0 4.3e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|148643533|ref|YP_001274046.1| - 1.3e-11 44.4 0.0 2.1e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|148643533|ref|YP_001274046.1| - 2.1e-09 37.3 0.4 3.2e-09 36.7 0.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Chorismate_synt PF01264.16 gi|148643534|ref|YP_001274047.1| - 2.4e-140 466.9 2.7 2.7e-140 466.7 1.8 1.0 1 0 0 1 1 1 1 Chorismate synthase HhH-GPD PF00730.20 gi|148643535|ref|YP_001274048.1| - 6.5e-12 45.6 0.0 8.8e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|148643535|ref|YP_001274048.1| - 0.0021 17.6 0.0 0.0045 16.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|148643535|ref|YP_001274048.1| - 0.043 13.9 0.0 0.093 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|148643535|ref|YP_001274048.1| - 0.14 12.0 0.0 0.31 10.9 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif ALAD PF00490.16 gi|148643536|ref|YP_001274049.1| - 6.2e-139 462.3 0.1 7.4e-139 462.1 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase CitG PF01874.11 gi|148643537|ref|YP_001274050.1| - 4.4e-75 252.4 0.0 5e-75 252.2 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase tRNA-synt_2d PF01409.15 gi|148643538|ref|YP_001274051.1| - 1.4e-94 315.8 0.0 1.9e-94 315.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) DUF2582 PF10771.4 gi|148643538|ref|YP_001274051.1| - 7.2e-10 38.5 1.3 2.1e-05 24.2 0.2 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF2582) HTH_24 PF13412.1 gi|148643538|ref|YP_001274051.1| - 2.5e-06 26.7 0.8 0.19 11.1 0.0 3.4 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|148643538|ref|YP_001274051.1| - 3.4e-05 23.4 0.2 0.16 11.7 0.1 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|148643538|ref|YP_001274051.1| - 5.8e-05 22.8 4.7 0.12 12.2 0.1 3.4 2 1 0 3 3 3 2 Winged helix-turn-helix tRNA-synt_2 PF00152.15 gi|148643538|ref|YP_001274051.1| - 8.1e-05 21.5 2.4 0.0024 16.6 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|148643538|ref|YP_001274051.1| - 0.00016 21.2 0.1 0.00067 19.2 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) MarR PF01047.17 gi|148643538|ref|YP_001274051.1| - 0.0012 18.5 0.0 1.1 9.0 0.0 2.4 2 0 0 2 2 2 2 MarR family TFIIE_alpha PF02002.12 gi|148643538|ref|YP_001274051.1| - 0.0083 15.6 2.9 0.095 12.2 0.9 2.8 1 1 1 2 2 2 1 TFIIE alpha subunit HTH_34 PF13601.1 gi|148643538|ref|YP_001274051.1| - 0.0094 15.9 0.6 0.27 11.3 0.0 2.6 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|148643538|ref|YP_001274051.1| - 0.014 14.9 0.0 5.3 6.6 0.0 3.2 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|148643538|ref|YP_001274051.1| - 0.017 14.7 0.0 2.3 7.9 0.0 2.3 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.1 gi|148643538|ref|YP_001274051.1| - 0.028 14.7 0.3 7.4 6.9 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF3863 PF12979.2 gi|148643538|ref|YP_001274051.1| - 0.058 11.9 0.0 0.12 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3863) HTH_20 PF12840.2 gi|148643538|ref|YP_001274051.1| - 0.12 12.1 0.0 9.1 6.1 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Exo_endo_phos PF03372.18 gi|148643539|ref|YP_001274052.1| - 1.7e-22 80.6 1.1 2e-22 80.3 0.7 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|148643539|ref|YP_001274052.1| - 3.7e-14 52.3 0.1 6.2e-14 51.6 0.1 1.4 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase HAD_2 PF13419.1 gi|148643540|ref|YP_001274053.1| - 2.9e-22 79.7 0.0 4.1e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|148643540|ref|YP_001274053.1| - 1.2e-12 47.3 0.1 1.8e-12 46.7 0.1 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|148643540|ref|YP_001274053.1| - 4.8e-09 36.9 1.5 1.5e-07 32.0 1.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|148643540|ref|YP_001274053.1| - 4.8e-05 23.5 0.1 7.4e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.9 gi|148643540|ref|YP_001274053.1| - 0.0041 16.5 0.1 0.0089 15.4 0.1 1.6 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) PNK3P PF08645.6 gi|148643540|ref|YP_001274053.1| - 0.059 12.8 0.2 3 7.2 0.0 2.6 2 1 0 2 2 2 0 Polynucleotide kinase 3 phosphatase DNA_pol_B PF00136.16 gi|148643541|ref|YP_001274054.1| - 2.2e-33 115.7 3.2 2.6e-33 115.5 2.2 1.0 1 0 0 1 1 1 1 DNA polymerase family B DUF4147 PF13660.1 gi|148643541|ref|YP_001274054.1| - 0.036 13.1 0.1 0.057 12.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) DUF2121 PF09894.4 gi|148643541|ref|YP_001274054.1| - 0.049 12.9 1.6 0.11 11.7 1.1 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2121) Dehydratase_MU PF02288.10 gi|148643542|ref|YP_001274055.1| - 0.052 13.3 0.0 0.063 13.0 0.0 1.1 1 0 0 1 1 1 0 Dehydratase medium subunit Rdx PF10262.4 gi|148643542|ref|YP_001274055.1| - 0.098 12.6 0.0 0.3 11.1 0.0 1.9 1 1 0 1 1 1 0 Rdx family ABC_tran PF00005.22 gi|148643543|ref|YP_001274056.1| - 1.5e-34 119.1 0.0 2.7e-34 118.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|148643543|ref|YP_001274056.1| - 4.5e-11 43.2 11.4 1.9e-10 41.1 0.3 2.8 2 1 1 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|148643543|ref|YP_001274056.1| - 0.0002 20.8 0.2 0.00038 19.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|148643543|ref|YP_001274056.1| - 0.001 18.3 1.2 0.06 12.5 0.9 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF4162 PF13732.1 gi|148643543|ref|YP_001274056.1| - 0.0021 18.5 1.8 0.0069 16.8 1.2 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|148643543|ref|YP_001274056.1| - 0.0044 17.3 4.1 0.013 15.8 2.9 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|148643543|ref|YP_001274056.1| - 0.016 14.4 0.1 0.035 13.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|148643543|ref|YP_001274056.1| - 0.086 12.9 1.5 0.89 9.6 1.0 2.5 1 1 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.2 gi|148643544|ref|YP_001274057.1| - 2.2e-44 151.9 24.6 2.5e-44 151.7 17.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|148643544|ref|YP_001274057.1| - 2.2e-24 85.7 18.4 5.7e-22 77.9 5.8 3.0 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|148643544|ref|YP_001274057.1| - 4.7e-17 61.7 13.4 6.3e-17 61.3 9.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|148643544|ref|YP_001274057.1| - 4.6e-13 48.8 16.7 6.5e-13 48.3 11.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|148643544|ref|YP_001274057.1| - 3.6 6.8 36.4 5.4 6.2 21.0 2.9 2 1 0 2 2 2 0 ABC-2 family transporter protein YtkA PF13115.1 gi|148643545|ref|YP_001274058.1| - 0.00016 21.9 0.0 0.00028 21.1 0.0 1.4 1 1 0 1 1 1 1 YtkA-like Ly49 PF08391.5 gi|148643545|ref|YP_001274058.1| - 0.015 15.4 0.1 0.019 15.1 0.0 1.1 1 0 0 1 1 1 0 Ly49-like protein, N-terminal region Big_1 PF02369.11 gi|148643545|ref|YP_001274058.1| - 0.016 15.0 0.1 0.021 14.7 0.1 1.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) Wzt_C PF14524.1 gi|148643545|ref|YP_001274058.1| - 0.065 12.9 0.1 0.19 11.4 0.1 1.8 1 1 0 1 1 1 0 Wzt C-terminal domain DUF4179 PF13786.1 gi|148643545|ref|YP_001274058.1| - 0.069 13.3 1.0 0.13 12.4 0.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) DUF1628 PF07790.6 gi|148643545|ref|YP_001274058.1| - 0.12 13.1 0.0 0.18 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) Ribosomal_S8e PF01201.17 gi|148643546|ref|YP_001274059.1| - 7.8e-37 126.3 2.1 8.6e-37 126.2 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e SERTA PF06031.8 gi|148643547|ref|YP_001274060.1| - 0.03 13.6 0.0 0.053 12.8 0.0 1.4 1 0 0 1 1 1 0 SERTA motif Antigen_Bd37 PF11641.3 gi|148643547|ref|YP_001274060.1| - 0.03 13.6 0.1 0.037 13.3 0.0 1.1 1 0 0 1 1 1 0 Glycosylphosphatidylinositol-anchored merozoite surface protein Yip1 PF04893.12 gi|148643547|ref|YP_001274060.1| - 0.18 11.3 3.0 2.7 7.4 2.1 2.0 1 1 0 1 1 1 0 Yip1 domain DUF4229 PF14012.1 gi|148643547|ref|YP_001274060.1| - 0.19 11.6 1.0 0.38 10.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) ABC2_membrane_3 PF12698.2 gi|148643547|ref|YP_001274060.1| - 0.23 10.4 10.6 0.85 8.5 7.0 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein CbiM PF01891.11 gi|148643548|ref|YP_001274061.1| - 1.4e-44 152.1 20.8 1.6e-44 151.9 14.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|148643548|ref|YP_001274061.1| - 9.8e-05 22.3 39.7 9.8e-05 22.3 27.5 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF3816) UbiA PF01040.13 gi|148643548|ref|YP_001274061.1| - 0.68 9.1 26.0 3.7 6.6 0.8 2.4 1 1 1 2 2 2 0 UbiA prenyltransferase family FmdE PF02663.9 gi|148643549|ref|YP_001274062.1| - 4.7e-51 172.1 0.0 1.8e-26 92.5 0.0 2.8 2 0 0 2 2 2 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon CCDC142 PF14923.1 gi|148643549|ref|YP_001274062.1| - 0.045 12.0 3.6 0.069 11.4 2.5 1.2 1 0 0 1 1 1 0 Coiled-coil protein 142 Plasmodium_Vir PF05795.6 gi|148643550|ref|YP_001274063.1| - 0.44 9.6 2.1 0.55 9.3 1.5 1.2 1 0 0 1 1 1 0 Plasmodium vivax Vir protein Pex14_N PF04695.8 gi|148643550|ref|YP_001274063.1| - 0.67 9.9 0.0 0.67 9.9 0.0 2.1 1 1 1 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Chorion_3 PF05387.6 gi|148643550|ref|YP_001274063.1| - 1.8 7.9 13.0 20 4.5 7.8 2.1 1 1 1 2 2 2 0 Chorion family 3 FmdE PF02663.9 gi|148643551|ref|YP_001274064.1| - 4.5e-45 152.7 0.0 3.3e-21 75.5 0.0 2.9 3 0 0 3 3 3 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon AIRS_C PF02769.17 gi|148643552|ref|YP_001274065.1| - 2.6e-28 98.9 2.4 6.2e-28 97.7 1.6 1.6 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|148643552|ref|YP_001274065.1| - 1.7e-16 60.2 0.3 5.2e-16 58.6 0.2 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain RDD PF06271.7 gi|148643553|ref|YP_001274066.1| - 3.7e-21 75.4 4.2 4e-21 75.3 2.9 1.0 1 0 0 1 1 1 1 RDD family DUF4199 PF13858.1 gi|148643553|ref|YP_001274066.1| - 0.07 13.0 8.1 0.27 11.1 5.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) UVR PF02151.14 gi|148643554|ref|YP_001274067.1| - 0.059 12.9 0.5 0.21 11.1 0.3 1.9 1 1 0 1 1 1 0 UvrB/uvrC motif SNase PF00565.12 gi|148643555|ref|YP_001274068.1| - 3.8e-12 46.4 0.0 6.5e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Coagulase PF08764.5 gi|148643555|ref|YP_001274068.1| - 0.023 14.6 1.4 0.031 14.2 1.0 1.2 1 0 0 1 1 1 0 Staphylococcus aureus coagulase PDDEXK_1 PF12705.2 gi|148643556|ref|YP_001274069.1| - 5.6e-15 55.4 0.2 7.6e-13 48.4 0.2 2.0 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Exo5 PF09810.4 gi|148643556|ref|YP_001274069.1| - 9e-11 41.5 5.5 2.6e-06 26.8 0.1 3.7 1 1 2 3 3 3 3 Exonuclease V - a 5' deoxyribonuclease Cas_Cas4 PF01930.12 gi|148643556|ref|YP_001274069.1| - 3.9e-10 39.8 0.0 6.1e-10 39.2 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function DUF83 Dna2 PF08696.6 gi|148643556|ref|YP_001274069.1| - 0.049 12.9 0.1 1.3 8.3 0.0 2.2 1 1 1 2 2 2 0 DNA replication factor Dna2 DUF911 PF06023.7 gi|148643556|ref|YP_001274069.1| - 0.087 12.0 0.7 0.13 11.4 0.0 1.6 2 1 0 2 2 2 0 Archaeal protein of unknown function (DUF911) Radical_SAM PF04055.16 gi|148643557|ref|YP_001274070.1| - 1e-06 28.9 0.1 5.8e-06 26.5 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|148643557|ref|YP_001274070.1| - 1.2e-05 25.5 9.6 1.6e-05 25.1 2.0 3.2 3 0 0 3 3 3 1 Iron-sulfur cluster-binding domain zf-CHY PF05495.7 gi|148643557|ref|YP_001274070.1| - 2.6 8.2 7.8 15 5.7 1.7 2.5 2 0 0 2 2 2 0 CHY zinc finger DEAD PF00270.24 gi|148643558|ref|YP_001274071.1| - 1e-47 161.7 0.2 6.3e-47 159.2 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|148643558|ref|YP_001274071.1| - 5.5e-30 103.0 0.4 2.3e-29 101.0 0.1 2.3 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|148643558|ref|YP_001274071.1| - 0.00043 20.1 0.1 0.004 16.9 0.0 2.5 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C_2 PF13307.1 gi|148643558|ref|YP_001274071.1| - 0.0033 17.3 0.2 0.031 14.2 0.0 2.4 3 0 0 3 3 3 1 Helicase C-terminal domain LRR_5 PF13306.1 gi|148643558|ref|YP_001274071.1| - 0.11 12.1 1.4 24 4.6 0.0 3.1 3 0 0 3 3 3 0 Leucine rich repeats (6 copies) CMS1 PF14617.1 gi|148643558|ref|YP_001274071.1| - 1.6 7.7 8.1 0.33 9.9 0.1 3.1 3 1 0 3 3 3 0 U3-containing 90S pre-ribosomal complex subunit HTH_24 PF13412.1 gi|148643559|ref|YP_001274072.1| - 4.4e-12 45.1 0.5 1.3e-11 43.7 0.2 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|148643559|ref|YP_001274072.1| - 1.6e-08 34.1 0.0 5.5e-08 32.3 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|148643559|ref|YP_001274072.1| - 1.7e-07 30.8 0.2 5.3e-07 29.2 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|148643559|ref|YP_001274072.1| - 5.5e-06 26.6 0.0 2e-05 24.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|148643559|ref|YP_001274072.1| - 1.5e-05 24.5 0.1 3.3e-05 23.4 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|148643559|ref|YP_001274072.1| - 7.6e-05 22.6 0.1 0.00016 21.6 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|148643559|ref|YP_001274072.1| - 0.00014 21.5 0.0 0.0004 20.1 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Cullin_Nedd8 PF10557.4 gi|148643559|ref|YP_001274072.1| - 0.0014 18.3 0.6 0.0065 16.2 0.4 2.0 1 1 0 1 1 1 1 Cullin protein neddylation domain HTH_45 PF14947.1 gi|148643559|ref|YP_001274072.1| - 0.0044 16.7 0.2 0.01 15.6 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2084 PF09857.4 gi|148643559|ref|YP_001274072.1| - 0.027 14.1 0.0 0.053 13.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2084) HTH_20 PF12840.2 gi|148643559|ref|YP_001274072.1| - 0.038 13.8 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|148643559|ref|YP_001274072.1| - 0.039 13.8 0.0 0.096 12.6 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|148643559|ref|YP_001274072.1| - 0.05 13.0 0.0 0.12 11.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|148643559|ref|YP_001274072.1| - 0.067 13.3 0.1 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DHHA1 PF02272.14 gi|148643560|ref|YP_001274073.1| - 5.8e-15 54.7 0.0 1.4e-14 53.4 0.0 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|148643560|ref|YP_001274073.1| - 1.5e-12 47.3 0.1 3.2e-12 46.3 0.1 1.5 1 0 0 1 1 1 1 DHH family SRP19 PF01922.12 gi|148643561|ref|YP_001274074.1| - 4.1e-26 91.3 0.2 4.6e-26 91.2 0.1 1.0 1 0 0 1 1 1 1 SRP19 protein GLF PF03275.8 gi|148643562|ref|YP_001274075.1| - 6.4e-70 234.8 14.5 9.9e-70 234.1 10.0 1.3 1 0 0 1 1 1 1 UDP-galactopyranose mutase NAD_binding_8 PF13450.1 gi|148643562|ref|YP_001274075.1| - 2.9e-17 62.4 0.1 8.6e-17 60.9 0.0 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|148643562|ref|YP_001274075.1| - 5.4e-06 26.2 0.1 5.3e-05 23.0 0.0 2.2 1 1 0 1 1 1 1 FAD-NAD(P)-binding Amino_oxidase PF01593.19 gi|148643562|ref|YP_001274075.1| - 2e-05 23.8 0.0 3.4e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Thi4 PF01946.12 gi|148643562|ref|YP_001274075.1| - 6.2e-05 22.1 0.0 0.00015 20.9 0.0 1.7 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|148643562|ref|YP_001274075.1| - 0.00011 22.4 0.3 0.0077 16.6 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|148643562|ref|YP_001274075.1| - 0.00039 20.3 0.3 0.0012 18.7 0.0 2.0 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|148643562|ref|YP_001274075.1| - 0.00058 19.9 0.0 0.0012 18.9 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|148643562|ref|YP_001274075.1| - 0.0035 15.8 0.0 0.0081 14.6 0.0 1.6 1 0 0 1 1 1 1 HI0933-like protein FAD_oxidored PF12831.2 gi|148643562|ref|YP_001274075.1| - 0.0064 15.6 0.0 0.07 12.2 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|148643562|ref|YP_001274075.1| - 0.0077 15.1 0.0 0.012 14.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|148643562|ref|YP_001274075.1| - 0.0097 14.8 0.0 0.016 14.1 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein GMC_oxred_N PF00732.14 gi|148643562|ref|YP_001274075.1| - 0.012 14.7 0.0 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 GMC oxidoreductase DAO PF01266.19 gi|148643562|ref|YP_001274075.1| - 0.013 14.4 0.0 0.018 13.9 0.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Redoxin PF08534.5 gi|148643562|ref|YP_001274075.1| - 0.13 11.7 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 Redoxin TrkA_N PF02254.13 gi|148643562|ref|YP_001274075.1| - 0.2 11.6 1.1 0.6 10.1 0.3 2.1 2 0 0 2 2 2 0 TrkA-N domain W2 PF02020.13 gi|148643562|ref|YP_001274075.1| - 0.91 9.5 6.0 0.53 10.2 0.3 3.1 2 1 1 3 3 3 0 eIF4-gamma/eIF5/eIF2-epsilon AAA_18 PF13238.1 gi|148643562|ref|YP_001274075.1| - 1 9.6 5.6 4.3 7.6 0.0 3.2 2 1 1 3 3 3 0 AAA domain Glycos_transf_2 PF00535.21 gi|148643563|ref|YP_001274076.1| - 1.7e-30 105.9 0.3 2.8e-30 105.2 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643563|ref|YP_001274076.1| - 5.3e-09 36.2 0.0 1.1e-08 35.1 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|148643563|ref|YP_001274076.1| - 3.9e-08 32.7 0.1 7.2e-08 31.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|148643563|ref|YP_001274076.1| - 0.052 13.8 0.1 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 HEM4 PF02602.10 gi|148643564|ref|YP_001274077.1| - 1.6e-42 145.3 0.0 1.9e-42 145.0 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Mei4 PF13971.1 gi|148643566|ref|YP_001274079.1| - 0.072 12.0 0.3 0.076 11.9 0.2 1.0 1 0 0 1 1 1 0 Meiosis-specific protein Mei4 Glycos_transf_2 PF00535.21 gi|148643567|ref|YP_001274080.1| - 3.3e-32 111.4 4.4 3.3e-32 111.4 3.1 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643567|ref|YP_001274080.1| - 4.2e-12 46.3 0.0 6.2e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|148643567|ref|YP_001274080.1| - 1.3e-10 40.8 1.1 3e-10 39.6 0.8 1.6 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|148643567|ref|YP_001274080.1| - 0.026 14.8 0.0 0.063 13.6 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase family 2 MGAT2 PF05060.9 gi|148643567|ref|YP_001274080.1| - 0.042 12.7 0.2 2.5 6.9 0.0 2.2 2 0 0 2 2 2 0 N-acetylglucosaminyltransferase II (MGAT2) DUF4428 PF14471.1 gi|148643569|ref|YP_001274082.1| - 0.0081 15.8 0.2 0.017 14.8 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) C1_1 PF00130.17 gi|148643569|ref|YP_001274082.1| - 0.024 14.3 0.9 0.04 13.6 0.6 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.2 gi|148643569|ref|YP_001274082.1| - 0.037 13.8 1.3 0.062 13.1 0.9 1.4 1 0 0 1 1 1 0 Double zinc ribbon YoqO PF14037.1 gi|148643569|ref|YP_001274082.1| - 0.092 12.8 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 YoqO-like protein Nudix_N_2 PF14803.1 gi|148643569|ref|YP_001274082.1| - 0.095 12.4 0.6 0.2 11.3 0.4 1.6 1 0 0 1 1 1 0 Nudix N-terminal ABC2_membrane_3 PF12698.2 gi|148643569|ref|YP_001274082.1| - 0.13 11.2 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4451 PF14616.1 gi|148643569|ref|YP_001274082.1| - 0.16 11.7 2.3 0.89 9.3 1.6 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4451) zf-NADH-PPase PF09297.6 gi|148643569|ref|YP_001274082.1| - 0.2 11.1 3.8 2.4 7.7 2.2 2.5 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|148643569|ref|YP_001274082.1| - 5.7 6.2 6.4 2.2 7.5 0.3 2.3 1 1 2 3 3 3 0 zinc-ribbon domain IFN-gamma PF00714.12 gi|148643571|ref|YP_001274084.1| - 0.18 11.6 1.8 0.19 11.5 1.3 1.1 1 0 0 1 1 1 0 Interferon gamma DUF3983 PF13137.1 gi|148643571|ref|YP_001274084.1| - 0.32 10.7 4.6 1.3 8.7 3.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3983) LicD PF04991.8 gi|148643572|ref|YP_001274085.1| - 2.5e-41 142.0 8.8 2.5e-41 142.0 6.1 1.8 2 0 0 2 2 2 1 LicD family Aminotran_5 PF00266.14 gi|148643573|ref|YP_001274086.1| - 7.8e-25 87.3 0.0 1e-24 87.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|148643573|ref|YP_001274086.1| - 0.0065 14.8 0.0 0.011 14.1 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|148643573|ref|YP_001274086.1| - 0.0088 14.5 0.0 0.014 13.8 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain VD10_N PF08476.5 gi|148643573|ref|YP_001274086.1| - 0.017 14.5 0.0 0.084 12.3 0.0 2.2 3 0 0 3 3 3 0 Viral D10 N-terminal GFO_IDH_MocA PF01408.17 gi|148643574|ref|YP_001274087.1| - 2.1e-16 60.5 0.0 3.9e-16 59.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CTP_transf_2 PF01467.21 gi|148643574|ref|YP_001274087.1| - 1.9e-11 44.2 0.1 1.6e-10 41.2 0.0 2.4 2 1 0 2 2 2 1 Cytidylyltransferase NAD_binding_3 PF03447.11 gi|148643574|ref|YP_001274087.1| - 0.0021 18.4 0.0 0.0055 17.0 0.0 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain FAD_syn PF06574.7 gi|148643574|ref|YP_001274087.1| - 0.0064 16.1 0.0 0.027 14.0 0.0 2.1 2 0 0 2 2 2 1 FAD synthetase DapB_N PF01113.15 gi|148643574|ref|YP_001274087.1| - 0.009 15.9 0.0 0.67 9.8 0.0 2.5 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus LicD PF04991.8 gi|148643575|ref|YP_001274088.1| - 1.9e-46 158.7 10.1 3.1e-46 158.0 7.0 1.3 1 0 0 1 1 1 1 LicD family Aminotran_1_2 PF00155.16 gi|148643576|ref|YP_001274089.1| - 5.1e-31 107.9 0.0 8.1e-31 107.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II NTP_transferase PF00483.18 gi|148643576|ref|YP_001274089.1| - 2.7e-10 39.9 0.0 2e-09 37.1 0.1 2.2 2 1 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|148643576|ref|YP_001274089.1| - 1.9e-09 37.7 0.0 3.1e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|148643576|ref|YP_001274089.1| - 0.00034 20.2 0.1 0.00063 19.3 0.1 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OCD_Mu_crystall PF02423.10 gi|148643577|ref|YP_001274090.1| - 3.2e-41 141.0 0.0 6.8e-41 140.0 0.0 1.5 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family 2-Hacid_dh_C PF02826.14 gi|148643577|ref|YP_001274090.1| - 0.0036 16.4 0.0 0.0062 15.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|148643577|ref|YP_001274090.1| - 0.025 14.9 0.0 0.087 13.2 0.0 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|148643577|ref|YP_001274090.1| - 0.034 14.2 0.1 0.1 12.6 0.0 1.7 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DDE_Tnp_1_6 PF13751.1 gi|148643583|ref|YP_001274096.1| - 3.7e-21 75.4 2.3 6.6e-21 74.6 1.6 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|148643583|ref|YP_001274096.1| - 2e-12 47.1 0.4 5.5e-12 45.6 0.3 1.8 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|148643583|ref|YP_001274096.1| - 1.1e-07 31.6 0.1 2.6e-07 30.4 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) Abi_C PF14355.1 gi|148643585|ref|YP_001274098.1| - 0.0052 16.6 1.8 0.0074 16.2 0.1 2.1 2 1 0 2 2 2 1 Abortive infection C-terminus GBP_C PF02841.9 gi|148643585|ref|YP_001274098.1| - 0.031 13.4 0.1 0.041 13.0 0.1 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain Spore_YhcN_YlaJ PF09580.5 gi|148643585|ref|YP_001274098.1| - 0.05 13.7 0.5 0.083 13.0 0.3 1.4 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) TetR_C_4 PF08359.6 gi|148643585|ref|YP_001274098.1| - 0.052 13.4 0.6 0.17 11.7 0.1 2.1 1 1 1 2 2 2 0 YsiA-like protein, C-terminal region Sigma70_r1_1 PF03979.9 gi|148643585|ref|YP_001274098.1| - 0.078 12.9 1.7 0.22 11.4 1.2 1.8 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 Ribosomal_S13 PF00416.17 gi|148643585|ref|YP_001274098.1| - 1.8 9.0 4.5 18 5.7 3.1 2.2 1 1 0 1 1 1 0 Ribosomal protein S13/S18 DUF95 PF01944.12 gi|148643586|ref|YP_001274099.1| - 9e-31 106.8 14.3 1.1e-30 106.5 9.9 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 Claudin_2 PF13903.1 gi|148643586|ref|YP_001274099.1| - 0.016 14.9 9.0 0.25 11.0 4.2 2.3 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF3671 PF12420.3 gi|148643586|ref|YP_001274099.1| - 1.7 8.6 9.6 47 4.0 6.7 2.7 1 1 0 1 1 1 0 Protein of unknown function AAA_14 PF13173.1 gi|148643587|ref|YP_001274100.1| - 3.7e-21 75.3 0.0 1.1e-20 73.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.1 gi|148643587|ref|YP_001274100.1| - 1.1e-10 41.4 0.0 2e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA PF00004.24 gi|148643587|ref|YP_001274100.1| - 0.035 14.3 0.0 0.078 13.1 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|148643587|ref|YP_001274100.1| - 0.059 13.0 0.1 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 NTPase AAA_17 PF13207.1 gi|148643587|ref|YP_001274100.1| - 0.084 13.6 0.1 0.35 11.6 0.0 2.1 2 1 0 3 3 3 0 AAA domain MobB PF03205.9 gi|148643587|ref|YP_001274100.1| - 0.085 12.5 0.0 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|148643587|ref|YP_001274100.1| - 0.16 12.1 0.4 0.84 9.7 0.1 2.2 2 1 1 3 3 3 0 AAA domain HTH_3 PF01381.17 gi|148643588|ref|YP_001274101.1| - 4.6e-12 45.5 0.0 7.1e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|148643588|ref|YP_001274101.1| - 1.5e-11 44.1 0.1 2.7e-11 43.3 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|148643588|ref|YP_001274101.1| - 7.4e-09 35.6 0.1 1.8e-08 34.4 0.0 1.6 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.1 gi|148643588|ref|YP_001274101.1| - 4.8e-08 33.0 0.0 6.3e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|148643588|ref|YP_001274101.1| - 0.00048 19.8 0.0 0.00085 19.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MitMem_reg PF13012.1 gi|148643588|ref|YP_001274101.1| - 0.0059 16.6 0.1 0.014 15.4 0.0 1.6 1 1 0 1 1 1 1 Maintenance of mitochondrial structure and function MarR_2 PF12802.2 gi|148643588|ref|YP_001274101.1| - 0.022 14.3 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF955 PF06114.8 gi|148643589|ref|YP_001274102.1| - 1.7e-17 63.2 0.4 2.4e-17 62.7 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF955) Peptidase_U49 PF10463.4 gi|148643589|ref|YP_001274102.1| - 0.0059 16.4 0.7 0.0094 15.7 0.2 1.4 1 1 0 1 1 1 1 Peptidase U49 FPL PF09758.4 gi|148643590|ref|YP_001274103.1| - 0.01 15.6 0.4 0.021 14.5 0.3 1.5 1 0 0 1 1 1 0 Uncharacterised conserved protein SNF PF00209.13 gi|148643591|ref|YP_001274104.1| - 2.7e-80 270.3 51.3 2.7e-51 174.6 19.0 2.0 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF4328 PF14219.1 gi|148643591|ref|YP_001274104.1| - 0.082 12.2 0.2 0.082 12.2 0.1 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF4328) SNF PF00209.13 gi|148643592|ref|YP_001274105.1| - 1.1e-76 258.4 48.0 1e-48 166.0 16.3 2.1 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF4328 PF14219.1 gi|148643592|ref|YP_001274105.1| - 0.69 9.1 9.4 2.9 7.1 0.1 3.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4328) DUF11 PF01345.13 gi|148643593|ref|YP_001274106.1| - 8.3e-08 32.1 20.6 3.1e-05 23.9 1.5 5.4 6 0 0 6 6 6 2 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|148643593|ref|YP_001274106.1| - 8.7e-05 21.7 3.1 0.11 11.6 0.1 2.6 2 0 0 2 2 2 2 Translocon-associated protein beta (TRAPB) DUF11 PF01345.13 gi|148643594|ref|YP_001274107.1| - 1.8e-112 367.5 172.5 7.4e-14 51.5 2.1 22.3 20 2 1 21 21 21 18 Domain of unknown function DUF11 CARDB PF07705.6 gi|148643594|ref|YP_001274107.1| - 0.014 15.3 153.4 0.0055 16.7 5.4 18.4 16 2 2 19 19 19 0 CARDB TRAP_beta PF05753.9 gi|148643594|ref|YP_001274107.1| - 0.086 11.9 92.1 0.045 12.9 0.4 15.5 16 0 0 16 16 16 0 Translocon-associated protein beta (TRAPB) Polysacc_synt_2 PF02719.10 gi|148643595|ref|YP_001274108.1| - 9.4e-104 346.4 0.0 1.1e-103 346.2 0.0 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.16 gi|148643595|ref|YP_001274108.1| - 2.1e-22 79.7 0.1 3.1e-21 75.9 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|148643595|ref|YP_001274108.1| - 5.2e-18 64.7 0.1 6.2e-17 61.2 0.1 2.3 2 1 1 3 3 3 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|148643595|ref|YP_001274108.1| - 8.9e-12 44.4 0.2 4.1e-10 39.0 0.1 2.2 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|148643595|ref|YP_001274108.1| - 5.4e-10 38.6 0.1 3.8e-09 35.8 0.1 2.4 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|148643595|ref|YP_001274108.1| - 1.5e-09 37.9 0.0 2.4e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|148643595|ref|YP_001274108.1| - 4.5e-07 30.0 0.2 1.6e-06 28.2 0.1 2.1 2 1 0 2 2 2 1 NADH(P)-binding KR PF08659.5 gi|148643595|ref|YP_001274108.1| - 3.7e-05 23.4 0.0 6.7e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 KR domain NmrA PF05368.8 gi|148643595|ref|YP_001274108.1| - 0.00095 18.4 0.1 0.002 17.4 0.1 1.6 1 0 0 1 1 1 1 NmrA-like family Shikimate_DH PF01488.15 gi|148643595|ref|YP_001274108.1| - 0.024 14.7 0.3 0.083 12.9 0.1 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|148643595|ref|YP_001274108.1| - 0.028 14.4 0.1 0.047 13.6 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain F420_oxidored PF03807.12 gi|148643595|ref|YP_001274108.1| - 0.042 14.2 0.0 0.11 12.9 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|148643595|ref|YP_001274108.1| - 0.091 13.0 0.0 0.76 10.0 0.0 2.6 2 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain DegT_DnrJ_EryC1 PF01041.12 gi|148643596|ref|YP_001274109.1| - 3.1e-113 378.4 0.0 3.5e-113 378.3 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|148643596|ref|YP_001274109.1| - 2.2e-08 33.5 0.0 3.3e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|148643596|ref|YP_001274109.1| - 5.6e-07 28.8 0.1 1.1e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|148643596|ref|YP_001274109.1| - 1.8e-06 26.4 0.0 3.5e-06 25.5 0.0 1.4 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|148643596|ref|YP_001274109.1| - 5.4e-06 25.3 0.0 7.5e-06 24.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V CTP_transf_3 PF02348.14 gi|148643597|ref|YP_001274110.1| - 9e-26 90.8 3.2 1.2e-25 90.4 2.2 1.3 1 1 0 1 1 1 1 Cytidylyltransferase Acetyltransf_3 PF13302.1 gi|148643598|ref|YP_001274111.1| - 1e-15 58.1 0.0 2.5e-15 56.9 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|148643598|ref|YP_001274111.1| - 8.6e-12 45.2 1.8 1.3e-10 41.4 1.1 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|148643598|ref|YP_001274111.1| - 9.7e-09 35.1 0.0 5.8e-07 29.4 0.0 2.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Glyco_tran_28_C PF04101.11 gi|148643598|ref|YP_001274111.1| - 3.9e-07 29.8 0.0 1.1e-06 28.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.1 gi|148643598|ref|YP_001274111.1| - 3.7e-06 26.3 0.0 0.0047 16.1 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferase family 1 Acetyltransf_7 PF13508.1 gi|148643598|ref|YP_001274111.1| - 6.6e-06 26.2 1.4 2.1e-05 24.5 0.1 2.6 4 0 0 4 4 4 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|148643598|ref|YP_001274111.1| - 1.8e-05 24.6 0.0 7.5e-05 22.6 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|148643598|ref|YP_001274111.1| - 2e-05 24.6 0.0 3.7e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|148643598|ref|YP_001274111.1| - 0.00022 20.9 0.0 0.00051 19.7 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein NeuB PF03102.9 gi|148643599|ref|YP_001274112.1| - 1.7e-93 312.2 0.0 2e-93 311.9 0.0 1.1 1 0 0 1 1 1 1 NeuB family SAF PF08666.7 gi|148643599|ref|YP_001274112.1| - 7.3e-11 42.3 0.0 2e-10 40.9 0.0 1.7 1 0 0 1 1 1 1 SAF domain NAD_Gly3P_dh_N PF01210.18 gi|148643600|ref|YP_001274113.1| - 3.4e-40 137.3 0.3 5.8e-40 136.5 0.2 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_Gly3P_dh_C PF07479.9 gi|148643600|ref|YP_001274113.1| - 2.2e-27 95.5 1.4 2.6e-27 95.3 0.2 1.7 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ApbA PF02558.11 gi|148643600|ref|YP_001274113.1| - 6.1e-09 35.4 0.1 1.2e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|148643600|ref|YP_001274113.1| - 1.4e-06 28.2 0.1 2.1e-06 27.6 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|148643600|ref|YP_001274113.1| - 5.7e-06 26.0 0.1 1.7e-05 24.5 0.0 1.8 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|148643600|ref|YP_001274113.1| - 8.9e-05 22.8 0.1 0.00039 20.7 0.1 2.2 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.12 gi|148643600|ref|YP_001274113.1| - 0.00025 20.0 1.4 0.0018 17.2 0.2 2.0 1 1 1 2 2 2 1 Prephenate dehydrogenase Semialdhyde_dh PF01118.19 gi|148643600|ref|YP_001274113.1| - 0.00027 21.2 0.0 0.00048 20.4 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|148643600|ref|YP_001274113.1| - 0.0067 15.5 0.1 0.028 13.5 0.1 2.0 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|148643600|ref|YP_001274113.1| - 0.025 15.0 0.0 0.059 13.8 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_N PF03721.9 gi|148643600|ref|YP_001274113.1| - 0.026 13.9 0.5 0.085 12.2 0.0 1.9 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IspD PF01128.14 gi|148643602|ref|YP_001274115.1| - 1.2e-45 155.7 0.0 1.4e-45 155.5 0.0 1.0 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.2 gi|148643602|ref|YP_001274115.1| - 6.8e-10 39.2 0.0 8.3e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|148643602|ref|YP_001274115.1| - 0.0019 17.8 0.3 0.0048 16.5 0.2 1.6 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|148643602|ref|YP_001274115.1| - 0.014 14.7 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase Epimerase_2 PF02350.14 gi|148643603|ref|YP_001274116.1| - 0.024 13.4 0.0 0.047 12.4 0.0 1.7 1 1 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Capsule_synth PF05159.9 gi|148643603|ref|YP_001274116.1| - 0.049 13.0 0.0 0.089 12.2 0.0 1.4 1 0 0 1 1 1 0 Capsule polysaccharide biosynthesis protein LicD PF04991.8 gi|148643604|ref|YP_001274117.1| - 1.2e-52 178.9 3.4 1.5e-52 178.6 2.3 1.1 1 0 0 1 1 1 1 LicD family DUF2007 PF09413.5 gi|148643604|ref|YP_001274117.1| - 0.094 12.5 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2007) Glycos_transf_2 PF00535.21 gi|148643605|ref|YP_001274118.1| - 6.2e-33 113.8 1.2 6.2e-33 113.8 0.9 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643605|ref|YP_001274118.1| - 2.3e-11 43.9 0.0 3.4e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|148643605|ref|YP_001274118.1| - 4.5e-06 25.9 0.3 4.5e-06 25.9 0.2 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|148643605|ref|YP_001274118.1| - 0.01 16.1 0.4 0.049 13.9 0.1 2.2 2 1 0 2 2 2 0 Glycosyl transferase family 2 SAICAR_synt PF01259.13 gi|148643607|ref|YP_001274120.1| - 1.6e-63 214.0 1.9 1.9e-63 213.8 1.3 1.0 1 0 0 1 1 1 1 SAICAR synthetase DUF824 PF05688.6 gi|148643607|ref|YP_001274120.1| - 0.04 13.5 0.0 0.082 12.5 0.0 1.5 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) PurS PF02700.9 gi|148643608|ref|YP_001274121.1| - 3.7e-25 87.6 0.2 4.2e-25 87.5 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase Herpes_US12 PF05363.7 gi|148643608|ref|YP_001274121.1| - 0.018 15.5 0.0 0.022 15.2 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus US12 family GATase_5 PF13507.1 gi|148643609|ref|YP_001274122.1| - 1.4e-45 155.2 0.0 1.8e-45 154.8 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|148643609|ref|YP_001274122.1| - 1.1e-08 34.7 0.0 1.2e-08 34.6 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|148643609|ref|YP_001274122.1| - 8.2e-07 28.7 0.1 1.3e-06 28.1 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|148643609|ref|YP_001274122.1| - 1e-06 28.2 0.0 1.6e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|148643609|ref|YP_001274122.1| - 0.00021 20.6 0.0 0.00037 19.7 0.0 1.3 1 0 0 1 1 1 1 Putative amidotransferase SNO PF01174.14 gi|148643609|ref|YP_001274122.1| - 0.0015 18.2 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|148643609|ref|YP_001274122.1| - 0.0015 17.9 0.0 0.016 14.6 0.0 2.4 2 1 0 2 2 2 1 Peptidase C26 TP_methylase PF00590.15 gi|148643610|ref|YP_001274123.1| - 1.1e-49 169.0 0.1 1.2e-49 168.8 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases SIS PF01380.17 gi|148643611|ref|YP_001274124.1| - 3.1e-55 185.3 0.1 2.4e-27 95.1 0.4 2.2 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|148643611|ref|YP_001274124.1| - 3.7e-24 85.1 0.0 6.8e-24 84.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|148643611|ref|YP_001274124.1| - 2.1e-20 72.7 0.0 6.9e-16 57.8 0.0 2.2 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|148643611|ref|YP_001274124.1| - 2.5e-18 66.0 0.0 4.4e-18 65.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|148643611|ref|YP_001274124.1| - 2.8e-05 22.9 0.1 4.9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Abdominal-A PF12407.3 gi|148643611|ref|YP_001274124.1| - 0.14 11.6 0.3 0.33 10.4 0.2 1.6 1 0 0 1 1 1 0 Homeobox protein FANCI_HD2 PF14680.1 gi|148643612|ref|YP_001274125.1| - 0.12 11.4 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 FANCI helical domain 2 YMF19 PF02326.10 gi|148643613|ref|YP_001274126.1| - 0.31 11.6 4.6 0.43 11.1 3.2 1.2 1 0 0 1 1 1 0 Plant ATP synthase F0 DUF4399 PF14347.1 gi|148643614|ref|YP_001274127.1| - 1.7e-46 156.1 0.2 2.3e-12 46.7 0.0 5.3 2 1 3 5 5 5 4 Domain of unknown function (DUF4399) DUF4318 PF14201.1 gi|148643614|ref|YP_001274127.1| - 0.0002 21.1 0.3 5.2 6.9 0.0 5.0 5 1 1 6 6 6 1 Domain of unknown function (DUF4318) YfkB PF08756.5 gi|148643614|ref|YP_001274127.1| - 0.0035 16.9 1.3 4.7 6.7 0.0 3.5 4 1 0 4 4 4 2 YfkB-like domain DUF4295 PF14128.1 gi|148643614|ref|YP_001274127.1| - 0.014 14.9 0.0 0.04 13.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4295) Methyltransf_30 PF05430.6 gi|148643615|ref|YP_001274128.1| - 1.3e-26 92.6 0.0 2.7e-26 91.6 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Spermine_synth PF01564.12 gi|148643615|ref|YP_001274128.1| - 0.00078 18.4 0.0 0.0021 17.0 0.0 1.6 2 0 0 2 2 2 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|148643615|ref|YP_001274128.1| - 0.0079 16.2 0.0 0.016 15.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148643615|ref|YP_001274128.1| - 0.016 15.7 0.0 0.061 13.9 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|148643615|ref|YP_001274128.1| - 0.035 14.4 0.0 0.078 13.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|148643615|ref|YP_001274128.1| - 0.079 13.4 0.0 0.21 12.0 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Acyl_transf_3 PF01757.17 gi|148643616|ref|YP_001274129.1| - 2.1e-29 102.4 41.3 2.3e-29 102.2 28.7 1.0 1 0 0 1 1 1 1 Acyltransferase family TGT PF01702.13 gi|148643617|ref|YP_001274130.1| - 3.8e-53 180.2 0.1 5.2e-53 179.7 0.1 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|148643617|ref|YP_001274130.1| - 9.9e-30 102.2 0.3 3.4e-29 100.4 0.1 2.1 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|148643617|ref|YP_001274130.1| - 3.6e-16 58.6 0.2 2e-15 56.2 0.1 2.3 2 0 0 2 2 2 1 PUA domain Methyltransf_11 PF08241.7 gi|148643618|ref|YP_001274131.1| - 3.5e-21 75.4 0.0 6e-21 74.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|148643618|ref|YP_001274131.1| - 3.9e-21 75.2 0.8 5.9e-21 74.6 0.5 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148643618|ref|YP_001274131.1| - 8.9e-18 64.5 0.0 1.5e-17 63.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|148643618|ref|YP_001274131.1| - 3.8e-14 52.3 0.7 1.2e-13 50.7 0.1 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|148643618|ref|YP_001274131.1| - 4.4e-14 52.6 0.0 7.9e-14 51.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|148643618|ref|YP_001274131.1| - 1.2e-10 41.7 0.0 2.2e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148643618|ref|YP_001274131.1| - 3.5e-10 40.4 0.0 6.3e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|148643618|ref|YP_001274131.1| - 1.6e-08 33.6 0.0 3e-08 32.7 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) PCMT PF01135.14 gi|148643618|ref|YP_001274131.1| - 3.7e-07 29.8 0.0 5.6e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.10 gi|148643618|ref|YP_001274131.1| - 3.6e-05 23.4 1.1 0.00057 19.5 0.8 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|148643618|ref|YP_001274131.1| - 4.3e-05 23.5 0.0 6.9e-05 22.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ribosomal_L10 PF00466.15 gi|148643618|ref|YP_001274131.1| - 0.00013 21.8 0.1 0.017 15.0 0.0 2.2 1 1 1 2 2 2 2 Ribosomal protein L10 CMAS PF02353.15 gi|148643618|ref|YP_001274131.1| - 0.00029 20.0 0.2 0.00038 19.6 0.1 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|148643618|ref|YP_001274131.1| - 0.00087 18.7 0.3 0.0014 18.0 0.2 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|148643618|ref|YP_001274131.1| - 0.0015 17.9 0.0 0.0031 16.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Fibrillarin PF01269.12 gi|148643618|ref|YP_001274131.1| - 0.0039 16.1 0.1 0.018 13.9 0.0 1.9 2 0 0 2 2 2 1 Fibrillarin Methyltransf_32 PF13679.1 gi|148643618|ref|YP_001274131.1| - 0.0046 16.6 0.1 0.02 14.5 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Pox_MCEL PF03291.11 gi|148643618|ref|YP_001274131.1| - 0.015 14.1 0.1 0.022 13.6 0.1 1.3 1 0 0 1 1 1 0 mRNA capping enzyme PrmA PF06325.8 gi|148643618|ref|YP_001274131.1| - 0.022 13.8 0.1 0.23 10.5 0.0 2.0 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) TPMT PF05724.6 gi|148643618|ref|YP_001274131.1| - 0.024 14.0 0.0 0.049 13.0 0.0 1.5 2 0 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_3 PF01596.12 gi|148643618|ref|YP_001274131.1| - 0.026 13.5 0.1 0.053 12.5 0.0 1.5 1 1 0 1 1 1 0 O-methyltransferase Methyltransf_4 PF02390.12 gi|148643618|ref|YP_001274131.1| - 0.028 13.4 0.1 0.12 11.3 0.0 2.0 2 1 0 2 2 2 0 Putative methyltransferase RrnaAD PF00398.15 gi|148643618|ref|YP_001274131.1| - 0.029 13.3 0.0 0.052 12.5 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Polysacc_synt PF01943.12 gi|148643619|ref|YP_001274132.1| - 1.6e-41 142.4 47.5 1.6e-41 142.4 32.9 2.6 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|148643619|ref|YP_001274132.1| - 2.2e-22 79.4 42.2 1.6e-21 76.6 12.3 3.8 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|148643619|ref|YP_001274132.1| - 6.3e-19 68.4 35.6 6.3e-19 68.4 24.7 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|148643619|ref|YP_001274132.1| - 3.1e-11 42.3 45.7 3.1e-11 42.3 31.7 1.9 1 1 1 2 2 2 1 MviN-like protein MatE PF01554.13 gi|148643619|ref|YP_001274132.1| - 2.9e-07 30.2 11.9 2.9e-07 30.2 8.3 4.4 4 0 0 4 4 4 1 MatE Polysacc_synt PF01943.12 gi|148643620|ref|YP_001274133.1| - 3.4e-47 160.9 39.3 3.4e-47 160.9 27.2 2.5 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|148643620|ref|YP_001274133.1| - 1.8e-24 86.2 17.9 1.8e-24 86.2 12.4 3.7 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|148643620|ref|YP_001274133.1| - 8.9e-18 64.6 28.7 8.9e-18 64.6 19.9 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|148643620|ref|YP_001274133.1| - 1.1e-13 50.4 46.7 1.9e-12 46.4 24.8 2.2 1 1 1 2 2 2 2 MviN-like protein ACP_syn_III_C PF08541.5 gi|148643621|ref|YP_001274134.1| - 2.6e-10 40.1 0.0 5.3e-10 39.1 0.0 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.12 gi|148643621|ref|YP_001274134.1| - 8.7e-08 31.9 0.2 1.3e-07 31.3 0.1 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|148643621|ref|YP_001274134.1| - 0.0002 20.9 0.0 0.0025 17.3 0.0 2.0 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|148643621|ref|YP_001274134.1| - 0.00021 20.8 1.6 0.00034 20.2 0.4 1.9 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_C PF02803.13 gi|148643622|ref|YP_001274135.1| - 3e-12 46.0 1.3 1.4e-11 43.8 0.9 2.2 1 1 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|148643622|ref|YP_001274135.1| - 1.2e-11 44.1 3.2 2e-10 40.1 0.5 2.3 2 0 0 2 2 2 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|148643622|ref|YP_001274135.1| - 9.5e-05 21.9 2.5 0.00017 21.1 0.3 2.4 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|148643622|ref|YP_001274135.1| - 0.0026 17.3 0.6 0.82 9.3 0.2 2.6 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|148643622|ref|YP_001274135.1| - 0.0066 16.2 0.2 2.4 8.0 0.0 2.7 2 0 0 2 2 2 2 Beta-ketoacyl synthase, C-terminal domain Phage_hub_GP28 PF11110.3 gi|148643623|ref|YP_001274136.1| - 0.095 12.3 0.4 0.11 12.2 0.3 1.1 1 0 0 1 1 1 0 Baseplate hub distal subunit DUF1900 PF08954.6 gi|148643623|ref|YP_001274136.1| - 0.1 12.0 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1900) Methyltransf_31 PF13847.1 gi|148643624|ref|YP_001274137.1| - 2.5e-16 59.6 0.2 4.1e-16 58.9 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|148643624|ref|YP_001274137.1| - 7.2e-16 58.4 0.0 1.3e-15 57.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148643624|ref|YP_001274137.1| - 1e-13 51.8 0.1 2.4e-13 50.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|148643624|ref|YP_001274137.1| - 5.8e-10 39.4 0.0 1.1e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148643624|ref|YP_001274137.1| - 1.3e-09 37.9 0.0 1.9e-09 37.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|148643624|ref|YP_001274137.1| - 6e-08 33.0 0.3 1.4e-07 31.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|148643624|ref|YP_001274137.1| - 6.8e-08 31.9 0.0 9.8e-08 31.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|148643624|ref|YP_001274137.1| - 3.5e-07 30.2 0.0 6.5e-07 29.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|148643624|ref|YP_001274137.1| - 3.9e-07 29.8 0.0 6.7e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|148643624|ref|YP_001274137.1| - 3.3e-05 23.3 0.0 7.8e-05 22.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|148643624|ref|YP_001274137.1| - 0.00012 21.3 0.0 0.00015 20.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.1 gi|148643624|ref|YP_001274137.1| - 0.00029 21.6 0.0 0.00087 20.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|148643624|ref|YP_001274137.1| - 0.00032 19.8 0.0 0.00047 19.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.10 gi|148643624|ref|YP_001274137.1| - 0.00088 18.9 0.0 0.0068 16.0 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase TehB PF03848.9 gi|148643624|ref|YP_001274137.1| - 0.0012 17.9 0.1 0.0017 17.5 0.1 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_29 PF03141.11 gi|148643624|ref|YP_001274137.1| - 0.0021 16.5 0.0 0.0026 16.1 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_PK PF05891.7 gi|148643624|ref|YP_001274137.1| - 0.0029 16.9 0.0 0.0067 15.7 0.0 1.5 1 1 0 1 1 1 1 AdoMet dependent proline di-methyltransferase GidB PF02527.10 gi|148643624|ref|YP_001274137.1| - 0.0031 16.6 0.0 0.0043 16.2 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.15 gi|148643624|ref|YP_001274137.1| - 0.0033 16.5 0.0 0.0039 16.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|148643624|ref|YP_001274137.1| - 0.0042 16.1 0.0 0.017 14.2 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.14 gi|148643624|ref|YP_001274137.1| - 0.02 14.4 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.6 gi|148643624|ref|YP_001274137.1| - 0.024 14.0 0.0 0.035 13.4 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_32 PF13679.1 gi|148643624|ref|YP_001274137.1| - 0.16 11.6 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GATase_3 PF07685.9 gi|148643625|ref|YP_001274138.1| - 2.2e-37 128.0 0.7 4.2e-37 127.1 0.2 1.7 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|148643625|ref|YP_001274138.1| - 5.7e-27 94.4 0.3 1.1e-26 93.4 0.1 1.5 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|148643625|ref|YP_001274138.1| - 5e-18 65.4 0.1 3.1e-17 62.8 0.0 2.3 2 1 0 2 2 2 1 AAA domain GATase PF00117.23 gi|148643625|ref|YP_001274138.1| - 1.2e-05 24.8 0.2 0.00079 18.9 0.0 2.3 2 0 0 2 2 2 1 Glutamine amidotransferase class-I MobB PF03205.9 gi|148643625|ref|YP_001274138.1| - 3.3e-05 23.5 0.2 0.022 14.4 0.0 2.9 3 0 0 3 3 3 2 Molybdopterin guanine dinucleotide synthesis protein B DJ-1_PfpI PF01965.19 gi|148643625|ref|YP_001274138.1| - 0.019 14.4 0.0 0.36 10.2 0.0 2.4 2 0 0 2 2 2 0 DJ-1/PfpI family SRP54 PF00448.17 gi|148643625|ref|YP_001274138.1| - 0.022 14.2 0.3 0.17 11.3 0.1 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SNO PF01174.14 gi|148643625|ref|YP_001274138.1| - 0.025 14.1 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|148643625|ref|YP_001274138.1| - 0.051 12.9 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 Peptidase C26 AAA_31 PF13614.1 gi|148643625|ref|YP_001274138.1| - 0.058 13.3 0.2 13 5.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain DDE_Tnp_IS240 PF13610.1 gi|148643626|ref|YP_001274139.1| - 2.2e-07 30.9 6.3 2.2e-07 30.9 0.6 2.6 1 1 1 2 2 2 1 DDE domain MULE PF10551.4 gi|148643626|ref|YP_001274139.1| - 3.7e-06 27.0 0.2 1.2e-05 25.3 0.1 1.9 2 0 0 2 2 2 1 MULE transposase domain zf-ISL3 PF14690.1 gi|148643626|ref|YP_001274139.1| - 0.00041 20.3 3.0 0.0036 17.2 2.1 2.4 1 1 1 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 rve PF00665.21 gi|148643626|ref|YP_001274139.1| - 0.0018 18.3 0.3 0.019 15.0 0.0 2.3 2 0 0 2 2 2 1 Integrase core domain Zn-ribbon_8 PF09723.5 gi|148643626|ref|YP_001274139.1| - 0.083 12.8 2.3 9.6 6.2 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|148643626|ref|YP_001274139.1| - 0.82 9.3 5.5 9.5 5.9 0.5 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF4399 PF14347.1 gi|148643627|ref|YP_001274140.1| - 1.3e-26 92.3 3.7 1.5e-06 28.0 0.0 7.4 6 1 3 9 9 9 4 Domain of unknown function (DUF4399) PQQ_3 PF13570.1 gi|148643627|ref|YP_001274140.1| - 4.1e-10 39.5 24.9 0.095 13.0 0.0 9.1 9 1 1 10 10 10 4 PQQ-like domain Big_1 PF02369.11 gi|148643627|ref|YP_001274140.1| - 2.4e-07 30.5 74.5 0.00024 20.9 1.0 12.1 11 2 2 13 13 13 7 Bacterial Ig-like domain (group 1) Reg_prop PF07494.6 gi|148643627|ref|YP_001274140.1| - 0.00027 20.6 2.4 1 9.6 0.2 4.7 3 0 0 3 3 3 2 Two component regulator propeller DUF2141 PF09912.4 gi|148643627|ref|YP_001274140.1| - 0.00036 20.1 5.3 6.6 6.4 0.0 4.9 4 0 0 4 4 4 3 Uncharacterized protein conserved in bacteria (DUF2141) HTH_45 PF14947.1 gi|148643628|ref|YP_001274141.1| - 9.6e-06 25.3 0.6 1.4e-05 24.7 0.4 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|148643628|ref|YP_001274141.1| - 0.00067 19.2 0.0 0.00074 19.1 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|148643628|ref|YP_001274141.1| - 0.001 18.7 0.3 0.0069 16.0 0.1 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|148643628|ref|YP_001274141.1| - 0.0021 17.3 0.5 0.01 15.1 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|148643628|ref|YP_001274141.1| - 0.0023 17.4 0.1 0.0026 17.2 0.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit DUF387 PF04079.11 gi|148643628|ref|YP_001274141.1| - 0.035 13.4 0.1 0.036 13.4 0.0 1.1 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_27 PF13463.1 gi|148643628|ref|YP_001274141.1| - 0.074 13.3 0.0 0.09 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|148643628|ref|YP_001274141.1| - 0.081 12.5 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_5 PF01022.15 gi|148643628|ref|YP_001274141.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Lon_C PF05362.8 gi|148643629|ref|YP_001274142.1| - 7e-29 100.5 3.1 1.3e-28 99.7 2.1 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|148643629|ref|YP_001274142.1| - 8.4e-25 87.4 0.0 6.8e-18 64.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|148643629|ref|YP_001274142.1| - 1.8e-16 60.1 0.1 2.3e-09 36.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|148643629|ref|YP_001274142.1| - 1.6e-13 50.2 0.1 1.6e-08 33.9 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|148643629|ref|YP_001274142.1| - 1e-10 40.9 0.4 0.0011 17.8 0.0 3.2 3 0 0 3 3 3 2 MCM2/3/5 family AAA_5 PF07728.9 gi|148643629|ref|YP_001274142.1| - 1.1e-08 34.8 0.0 0.0019 17.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|148643629|ref|YP_001274142.1| - 1.6e-08 34.1 0.4 3.3e-08 33.0 0.2 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.24 gi|148643629|ref|YP_001274142.1| - 5.2e-06 26.6 0.2 0.008 16.3 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|148643629|ref|YP_001274142.1| - 5.6e-06 26.4 0.0 0.063 13.3 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|148643629|ref|YP_001274142.1| - 2.8e-05 23.7 0.0 0.021 14.4 0.0 2.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|148643629|ref|YP_001274142.1| - 8.5e-05 21.7 0.1 0.089 11.8 0.0 2.8 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|148643629|ref|YP_001274142.1| - 0.00014 21.3 0.0 0.0034 16.8 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|148643629|ref|YP_001274142.1| - 0.00041 20.5 0.0 0.021 14.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|148643629|ref|YP_001274142.1| - 0.0022 17.7 0.0 0.61 9.7 0.0 2.7 2 0 0 2 2 2 1 NTPase AAA_18 PF13238.1 gi|148643629|ref|YP_001274142.1| - 0.0024 18.1 0.1 0.0088 16.3 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_PrkA PF08298.6 gi|148643629|ref|YP_001274142.1| - 0.0029 16.3 0.2 0.34 9.5 0.0 2.4 2 0 0 2 2 2 1 PrkA AAA domain AAA_16 PF13191.1 gi|148643629|ref|YP_001274142.1| - 0.0031 17.5 0.0 0.0074 16.2 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_2 PF07724.9 gi|148643629|ref|YP_001274142.1| - 0.0042 17.0 0.8 1.9 8.3 0.0 3.4 3 0 0 3 3 3 1 AAA domain (Cdc48 subfamily) NACHT PF05729.7 gi|148643629|ref|YP_001274142.1| - 0.0075 15.9 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 NACHT domain T2SE PF00437.15 gi|148643629|ref|YP_001274142.1| - 0.011 14.6 0.1 0.056 12.3 0.0 2.2 3 0 0 3 3 3 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|148643629|ref|YP_001274142.1| - 0.027 13.6 0.0 0.075 12.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|148643629|ref|YP_001274142.1| - 0.057 12.9 0.0 0.31 10.6 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF815 PF05673.8 gi|148643629|ref|YP_001274142.1| - 0.067 12.1 0.0 0.13 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|148643629|ref|YP_001274142.1| - 0.068 14.0 0.0 0.19 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|148643629|ref|YP_001274142.1| - 0.083 13.0 0.0 0.49 10.5 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_19 PF13245.1 gi|148643629|ref|YP_001274142.1| - 0.084 12.6 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|148643629|ref|YP_001274142.1| - 0.73 9.4 4.4 0.5 10.0 0.0 2.9 5 0 0 5 5 5 0 Archaeal ATPase Mur_ligase_M PF08245.7 gi|148643630|ref|YP_001274143.1| - 3.7e-18 66.2 1.5 4.1e-16 59.5 0.2 3.0 2 1 0 2 2 2 1 Mur ligase middle domain zf-ribbon_3 PF13248.1 gi|148643630|ref|YP_001274143.1| - 0.011 14.8 0.2 0.031 13.4 0.1 1.7 1 0 0 1 1 1 0 zinc-ribbon domain HGTP_anticodon PF03129.15 gi|148643630|ref|YP_001274143.1| - 0.024 14.5 0.0 0.067 13.1 0.0 1.7 1 0 0 1 1 1 0 Anticodon binding domain OrfB_Zn_ribbon PF07282.6 gi|148643630|ref|YP_001274143.1| - 0.071 12.7 0.7 0.15 11.7 0.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain ADP_ribosyl_GH PF03747.9 gi|148643632|ref|YP_001274145.1| - 2.9e-62 211.0 0.0 3.3e-62 210.8 0.0 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase SapB_1 PF05184.10 gi|148643632|ref|YP_001274145.1| - 0.09 12.6 0.2 0.29 11.0 0.2 1.9 1 0 0 1 1 1 0 Saposin-like type B, region 1 Acetyltransf_3 PF13302.1 gi|148643633|ref|YP_001274146.1| - 1.1e-27 96.8 0.1 1.3e-27 96.6 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|148643633|ref|YP_001274146.1| - 1.7e-08 34.5 0.2 2e-08 34.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|148643633|ref|YP_001274146.1| - 1.5e-06 28.1 0.0 2.2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|148643633|ref|YP_001274146.1| - 0.043 13.9 0.1 0.067 13.3 0.1 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|148643633|ref|YP_001274146.1| - 0.082 12.7 0.0 0.099 12.5 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Nitroreductase PF00881.19 gi|148643634|ref|YP_001274147.1| - 1.3e-22 80.3 0.0 1.6e-22 80.0 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family zf-ribbon_3 PF13248.1 gi|148643635|ref|YP_001274148.1| - 1.2e-07 30.6 1.9 1.7e-07 30.2 1.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148643635|ref|YP_001274148.1| - 1.7e-06 27.3 4.4 2.4e-06 26.8 3.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148643635|ref|YP_001274148.1| - 1.2e-05 25.0 0.7 1.5e-05 24.6 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|148643635|ref|YP_001274148.1| - 0.0074 15.7 0.4 0.072 12.6 0.0 2.1 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain ADK_lid PF05191.9 gi|148643635|ref|YP_001274148.1| - 0.067 12.8 2.0 5.3 6.7 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid Auto_anti-p27 PF06677.7 gi|148643635|ref|YP_001274148.1| - 0.069 12.9 1.2 0.42 10.4 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Nudix_N_2 PF14803.1 gi|148643635|ref|YP_001274148.1| - 0.086 12.5 1.5 0.72 9.5 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal DNA_RNApol_7kD PF03604.8 gi|148643635|ref|YP_001274148.1| - 0.25 10.8 1.5 10 5.6 0.3 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit GFA PF04828.9 gi|148643635|ref|YP_001274148.1| - 0.31 11.0 1.7 0.45 10.4 0.0 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF1610 PF07754.6 gi|148643635|ref|YP_001274148.1| - 0.68 10.1 3.7 3.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) A2L_zn_ribbon PF08792.5 gi|148643635|ref|YP_001274148.1| - 5.4 6.5 7.1 3e+02 1.0 4.9 2.3 1 1 0 1 1 1 0 A2L zinc ribbon domain DUF2749 PF10907.3 gi|148643636|ref|YP_001274149.1| - 0.25 11.2 1.6 2.6 7.9 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) Pribosyltran_N PF13793.1 gi|148643637|ref|YP_001274150.1| - 2.8e-32 110.8 0.0 2.4e-28 98.2 0.0 2.4 2 1 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|148643637|ref|YP_001274150.1| - 3.9e-25 87.9 1.1 1e-23 83.4 0.4 2.7 3 0 0 3 3 3 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|148643637|ref|YP_001274150.1| - 1.5e-08 34.6 3.7 2.6e-08 33.8 0.6 2.3 3 0 0 3 3 3 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|148643637|ref|YP_001274150.1| - 2.6e-05 23.5 0.1 6e-05 22.3 0.1 1.6 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|148643637|ref|YP_001274150.1| - 0.034 13.4 0.0 0.17 11.2 0.0 2.0 1 1 0 1 1 1 0 Phosphoribosyl transferase PRTase_3 PF15610.1 gi|148643637|ref|YP_001274150.1| - 0.066 12.1 0.1 0.26 10.1 0.0 1.9 2 0 0 2 2 2 0 PRTase ComF-like YqzH PF14164.1 gi|148643638|ref|YP_001274151.1| - 0.017 14.9 0.3 0.059 13.2 0.0 1.9 2 0 0 2 2 2 0 YqzH-like protein UvrB PF12344.3 gi|148643639|ref|YP_001274152.1| - 4.3e-17 61.3 1.6 1e-16 60.1 1.1 1.7 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|148643639|ref|YP_001274152.1| - 2.2e-15 56.2 0.0 5.9e-15 54.8 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|148643639|ref|YP_001274152.1| - 1.5e-13 50.9 0.0 1.1e-12 48.1 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|148643639|ref|YP_001274152.1| - 1.5e-11 43.4 3.1 2e-11 42.9 0.8 2.3 2 0 0 2 2 2 1 UvrB/uvrC motif DEAD PF00270.24 gi|148643639|ref|YP_001274152.1| - 1.5e-06 27.8 0.1 0.00017 21.1 0.0 3.2 2 1 0 3 3 3 1 DEAD/DEAH box helicase Kinesin PF00225.18 gi|148643639|ref|YP_001274152.1| - 0.0017 17.1 0.0 0.004 15.9 0.0 1.6 1 0 0 1 1 1 1 Kinesin motor domain AAA_19 PF13245.1 gi|148643639|ref|YP_001274152.1| - 0.017 14.8 0.0 0.35 10.6 0.0 2.7 3 0 0 3 3 3 0 Part of AAA domain UvrD-helicase PF00580.16 gi|148643639|ref|YP_001274152.1| - 0.028 13.7 5.9 1.1 8.5 1.3 2.7 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain AAA_22 PF13401.1 gi|148643639|ref|YP_001274152.1| - 0.088 12.9 0.0 2 8.5 0.0 3.0 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|148643641|ref|YP_001274154.1| - 1.7e-21 76.9 0.0 1.9e-10 41.1 0.0 4.4 3 2 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|148643641|ref|YP_001274154.1| - 1.1e-12 47.6 0.6 0.04 13.1 0.2 4.1 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|148643641|ref|YP_001274154.1| - 8e-08 32.5 17.7 0.00084 19.3 0.0 4.9 4 1 0 4 4 4 3 AAA domain AAA_29 PF13555.1 gi|148643641|ref|YP_001274154.1| - 1.7e-07 30.6 0.1 0.0078 15.7 0.1 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|148643641|ref|YP_001274154.1| - 9.8e-07 28.9 0.0 0.0086 16.0 0.0 3.0 3 0 0 3 3 3 2 AAA ATPase domain DUF258 PF03193.11 gi|148643641|ref|YP_001274154.1| - 2.4e-06 26.8 0.1 0.011 14.9 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|148643641|ref|YP_001274154.1| - 7.5e-06 25.4 0.0 0.072 12.4 0.0 2.8 3 0 0 3 3 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|148643641|ref|YP_001274154.1| - 1.4e-05 24.6 0.3 0.074 12.7 0.1 2.5 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter AAA_14 PF13173.1 gi|148643641|ref|YP_001274154.1| - 3.4e-05 23.7 0.1 0.39 10.6 0.0 3.5 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.1 gi|148643641|ref|YP_001274154.1| - 5.2e-05 23.4 0.7 0.55 10.3 0.1 3.6 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|148643641|ref|YP_001274154.1| - 7.1e-05 23.2 5.2 0.15 12.3 0.1 3.1 3 0 0 3 3 3 2 AAA domain Zn-ribbon_8 PF09723.5 gi|148643641|ref|YP_001274154.1| - 8.8e-05 22.3 8.7 0.0082 16.0 0.2 4.3 4 0 0 4 4 4 1 Zinc ribbon domain AAA_18 PF13238.1 gi|148643641|ref|YP_001274154.1| - 0.00013 22.2 1.2 0.96 9.7 0.0 3.4 3 0 0 3 3 2 2 AAA domain Arch_ATPase PF01637.13 gi|148643641|ref|YP_001274154.1| - 0.00044 20.0 0.1 0.7 9.5 0.0 3.0 2 0 0 2 2 2 2 Archaeal ATPase AAA_10 PF12846.2 gi|148643641|ref|YP_001274154.1| - 0.00049 19.6 0.2 0.17 11.2 0.1 2.6 2 0 0 2 2 2 1 AAA-like domain KaiC PF06745.8 gi|148643641|ref|YP_001274154.1| - 0.0012 18.0 0.1 0.78 8.8 0.0 2.5 2 0 0 2 2 2 2 KaiC MMR_HSR1 PF01926.18 gi|148643641|ref|YP_001274154.1| - 0.0017 18.3 0.3 0.37 10.7 0.1 3.3 3 0 0 3 3 3 1 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|148643641|ref|YP_001274154.1| - 0.0023 18.7 9.7 0.51 11.1 0.3 4.1 3 0 0 3 3 3 2 AAA domain NACHT PF05729.7 gi|148643641|ref|YP_001274154.1| - 0.0023 17.5 0.1 0.24 11.0 0.0 2.6 3 0 0 3 3 2 1 NACHT domain DnaJ_CXXCXGXG PF00684.14 gi|148643641|ref|YP_001274154.1| - 0.0024 17.8 12.3 0.021 14.8 0.3 3.7 4 0 0 4 4 3 1 DnaJ central domain AAA_33 PF13671.1 gi|148643641|ref|YP_001274154.1| - 0.0032 17.3 0.2 3.2 7.6 0.0 3.0 3 0 0 3 3 3 1 AAA domain APS_kinase PF01583.15 gi|148643641|ref|YP_001274154.1| - 0.0061 16.2 0.1 1.3 8.6 0.0 2.6 2 0 0 2 2 2 1 Adenylylsulphate kinase Miro PF08477.8 gi|148643641|ref|YP_001274154.1| - 0.0079 16.6 0.2 2.9 8.4 0.1 3.0 2 0 0 2 2 2 1 Miro-like protein Viral_helicase1 PF01443.13 gi|148643641|ref|YP_001274154.1| - 0.0083 15.6 0.0 0.24 10.9 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.4 gi|148643641|ref|YP_001274154.1| - 0.019 13.9 0.1 4.1 6.2 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) cobW PF02492.14 gi|148643641|ref|YP_001274154.1| - 0.019 14.3 1.0 1.2 8.5 0.1 2.9 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain RNA12 PF10443.4 gi|148643641|ref|YP_001274154.1| - 0.027 12.9 0.0 1.3 7.4 0.0 2.2 2 0 0 2 2 2 0 RNA12 protein MobB PF03205.9 gi|148643641|ref|YP_001274154.1| - 0.092 12.4 0.4 5.7 6.6 0.2 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_pol_Rbc25 PF08292.7 gi|148643641|ref|YP_001274154.1| - 0.14 12.3 0.0 2.1 8.5 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase III subunit Rpc25 AAA_19 PF13245.1 gi|148643641|ref|YP_001274154.1| - 0.19 11.5 0.3 38 4.1 0.0 3.0 3 0 0 3 3 2 0 Part of AAA domain HypA PF01155.14 gi|148643641|ref|YP_001274154.1| - 0.38 10.4 1.7 3.5 7.3 0.0 3.0 3 0 0 3 3 3 0 Hydrogenase expression/synthesis hypA family YhfH PF14149.1 gi|148643641|ref|YP_001274154.1| - 1.1 9.1 6.1 2.4 8.0 0.0 4.0 4 0 0 4 4 3 0 YhfH-like protein DUF368 PF04018.8 gi|148643642|ref|YP_001274155.1| - 8.3e-78 261.1 23.1 8.3e-78 261.1 16.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF368) DEAD PF00270.24 gi|148643643|ref|YP_001274156.1| - 1.3e-31 109.4 0.1 3.8e-30 104.6 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|148643643|ref|YP_001274156.1| - 9.2e-14 51.0 0.0 2.4e-13 49.7 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|148643643|ref|YP_001274156.1| - 2.6e-13 50.2 0.5 9.6e-13 48.3 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.9 gi|148643643|ref|YP_001274156.1| - 6.4e-07 28.9 0.1 1e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 SecA DEAD-like domain PhnA_Zn_Ribbon PF08274.7 gi|148643643|ref|YP_001274156.1| - 0.009 15.7 1.1 0.009 15.7 0.7 2.3 3 0 0 3 3 3 1 PhnA Zinc-Ribbon KaiC PF06745.8 gi|148643643|ref|YP_001274156.1| - 0.03 13.4 0.0 0.074 12.1 0.0 1.7 1 0 0 1 1 1 0 KaiC DUF123 PF01986.11 gi|148643644|ref|YP_001274157.1| - 3.2e-33 113.7 0.5 4.4e-33 113.3 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.19 gi|148643644|ref|YP_001274157.1| - 2.6e-05 24.5 2.2 4e-05 23.8 1.5 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain DUF4399 PF14347.1 gi|148643645|ref|YP_001274158.1| - 8.6e-26 89.7 0.0 5.8e-08 32.6 0.0 4.7 2 1 2 4 4 4 4 Domain of unknown function (DUF4399) CarboxypepD_reg PF13620.1 gi|148643645|ref|YP_001274158.1| - 8.4e-06 25.7 12.9 0.026 14.5 0.3 5.4 5 1 1 6 6 6 3 Carboxypeptidase regulatory-like domain BRCA-2_OB1 PF09103.5 gi|148643645|ref|YP_001274158.1| - 0.089 12.4 7.0 1.6 8.4 0.0 3.5 3 1 0 3 3 3 0 BRCA2, oligonucleotide/oligosaccharide-binding, domain 1 Beta_helix PF13229.1 gi|148643646|ref|YP_001274159.1| - 1.6e-22 79.9 331.1 6.1e-10 39.0 19.0 13.2 3 3 6 10 10 10 8 Right handed beta helix region NosD PF05048.8 gi|148643646|ref|YP_001274159.1| - 1.7e-05 24.0 54.2 0.00019 20.6 9.2 12.6 2 2 8 10 10 10 6 Periplasmic copper-binding protein (NosD) DUF4399 PF14347.1 gi|148643647|ref|YP_001274160.1| - 5.6e-25 87.1 0.0 8.4e-06 25.7 0.0 7.3 6 1 1 7 7 7 4 Domain of unknown function (DUF4399) Big_1 PF02369.11 gi|148643647|ref|YP_001274160.1| - 3.9e-15 55.5 27.4 0.0016 18.3 0.2 9.1 8 0 0 8 8 8 8 Bacterial Ig-like domain (group 1) phage_tail_N PF08400.5 gi|148643647|ref|YP_001274160.1| - 0.45 10.2 11.7 0.9 9.2 0.1 5.2 5 0 0 5 5 5 0 Prophage tail fibre N-terminal HTH_29 PF13551.1 gi|148643648|ref|YP_001274161.1| - 5.2e-16 58.7 0.0 6.7e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|148643648|ref|YP_001274161.1| - 9.4e-11 41.0 0.1 3.6e-10 39.1 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|148643648|ref|YP_001274161.1| - 7e-10 38.7 0.0 1.7e-09 37.5 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.1 gi|148643648|ref|YP_001274161.1| - 9e-08 32.8 0.0 2.2e-07 31.5 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain LZ_Tnp_IS481 PF13011.1 gi|148643648|ref|YP_001274161.1| - 2.2e-06 27.8 0.0 5.5e-06 26.6 0.0 1.6 2 0 0 2 2 2 1 leucine-zipper of insertion element IS481 HTH_33 PF13592.1 gi|148643648|ref|YP_001274161.1| - 2.5e-06 26.9 0.0 5.2e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.1 gi|148643648|ref|YP_001274161.1| - 7.5e-05 22.2 0.1 0.0011 18.4 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|148643648|ref|YP_001274161.1| - 9.5e-05 22.5 0.0 0.0002 21.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|148643648|ref|YP_001274161.1| - 0.00071 18.6 0.0 0.016 14.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_IS630 PF01710.11 gi|148643648|ref|YP_001274161.1| - 0.0065 16.1 0.1 0.0097 15.5 0.0 1.3 1 0 0 1 1 1 1 Transposase MerR_1 PF13411.1 gi|148643648|ref|YP_001274161.1| - 0.054 13.2 0.0 0.48 10.2 0.0 2.4 1 1 1 2 2 2 0 MerR HTH family regulatory protein NUMOD1 PF07453.8 gi|148643648|ref|YP_001274161.1| - 0.082 12.7 1.1 0.36 10.7 0.0 2.4 3 0 0 3 3 3 0 NUMOD1 domain DDE_3 PF13358.1 gi|148643649|ref|YP_001274162.1| - 1.4e-18 67.0 0.9 1.7e-18 66.8 0.6 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_1 PF03184.14 gi|148643649|ref|YP_001274162.1| - 9.1e-08 31.4 1.8 2.1e-07 30.2 1.2 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|148643649|ref|YP_001274162.1| - 0.0014 18.7 0.0 0.0022 18.0 0.0 1.5 1 1 0 1 1 1 1 Integrase core domain DDE_Tnp_ISAZ013 PF07592.6 gi|148643649|ref|YP_001274162.1| - 0.029 13.1 0.2 0.052 12.2 0.1 1.4 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain DUF4399 PF14347.1 gi|148643650|ref|YP_001274163.1| - 2.6e-22 78.6 4.8 4.6e-06 26.5 0.0 5.6 3 2 2 5 5 5 4 Domain of unknown function (DUF4399) Big_1 PF02369.11 gi|148643650|ref|YP_001274163.1| - 1.4e-11 44.1 51.4 0.0061 16.4 1.2 9.2 6 2 2 8 8 8 7 Bacterial Ig-like domain (group 1) DUF371 PF04027.8 gi|148643651|ref|YP_001274164.1| - 2.9e-52 175.8 2.3 3.2e-52 175.6 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) ABC_tran PF00005.22 gi|148643652|ref|YP_001274165.1| - 1.1e-17 64.5 0.8 1.8e-16 60.6 0.1 2.6 2 1 0 2 2 2 1 ABC transporter AAA PF00004.24 gi|148643652|ref|YP_001274165.1| - 0.0076 16.4 1.7 5.3 7.2 0.0 3.2 1 1 1 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|148643652|ref|YP_001274165.1| - 0.016 14.7 0.1 0.04 13.4 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|148643652|ref|YP_001274165.1| - 0.039 13.6 0.8 9.5 5.9 0.0 2.5 2 0 0 2 2 2 0 NTPase DUF258 PF03193.11 gi|148643652|ref|YP_001274165.1| - 0.04 13.1 0.1 0.082 12.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ArgK PF03308.11 gi|148643652|ref|YP_001274165.1| - 0.072 11.8 0.0 0.13 11.0 0.0 1.3 1 0 0 1 1 1 0 ArgK protein KdpD PF02702.12 gi|148643652|ref|YP_001274165.1| - 0.073 12.2 0.2 6.1 5.9 0.0 2.3 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain AAA_21 PF13304.1 gi|148643652|ref|YP_001274165.1| - 0.099 12.5 21.8 0.038 13.9 4.1 3.5 2 2 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|148643652|ref|YP_001274165.1| - 0.1 13.3 3.6 0.16 12.8 0.4 2.6 2 1 0 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|148643653|ref|YP_001274166.1| - 1.4e-27 96.2 26.8 1.4e-27 96.2 18.6 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|148643653|ref|YP_001274166.1| - 2.1e-05 23.7 33.1 2.1e-05 23.7 22.9 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein Glycos_transf_2 PF00535.21 gi|148643654|ref|YP_001274167.1| - 3.6e-69 231.7 10.7 1e-36 126.1 1.8 2.9 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyphos_transf PF04464.9 gi|148643654|ref|YP_001274167.1| - 2.1e-63 214.3 22.9 5.1e-63 213.0 15.9 1.7 1 0 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Glyco_tranf_2_3 PF13641.1 gi|148643654|ref|YP_001274167.1| - 1.6e-28 100.0 0.0 1.5e-14 54.4 0.0 2.4 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|148643654|ref|YP_001274167.1| - 3.9e-24 85.2 18.1 2.2e-13 49.9 0.7 3.1 4 0 0 4 4 4 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|148643654|ref|YP_001274167.1| - 3.6e-08 33.6 0.1 0.0017 18.6 0.0 3.0 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|148643654|ref|YP_001274167.1| - 7e-05 22.6 0.0 0.017 14.8 0.0 2.5 2 0 0 2 2 2 2 Glycosyl transferase family group 2 Methyltransf_21 PF05050.7 gi|148643655|ref|YP_001274168.1| - 2.7e-19 69.7 1.4 3.3e-19 69.4 0.3 1.6 2 0 0 2 2 2 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|148643655|ref|YP_001274168.1| - 0.00072 20.1 0.0 0.0014 19.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|148643655|ref|YP_001274168.1| - 0.0011 18.5 1.0 0.0023 17.5 0.1 1.9 2 1 0 2 2 2 1 Met-10+ like-protein HALZ PF02183.13 gi|148643655|ref|YP_001274168.1| - 0.0091 15.6 1.6 0.03 14.0 1.1 1.9 1 0 0 1 1 1 1 Homeobox associated leucine zipper DivIC PF04977.10 gi|148643655|ref|YP_001274168.1| - 0.041 13.3 2.3 0.15 11.5 1.6 2.0 1 0 0 1 1 1 0 Septum formation initiator DUF4200 PF13863.1 gi|148643655|ref|YP_001274168.1| - 0.044 13.7 5.2 2.7 7.9 1.4 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Kinesin-relat_1 PF12711.2 gi|148643655|ref|YP_001274168.1| - 0.13 12.6 2.0 0.3 11.4 0.5 2.3 2 0 0 2 2 2 0 Kinesin motor DDE_Tnp_IS66 PF03050.9 gi|148643656|ref|YP_001274169.1| - 4.5e-08 32.6 3.0 2.4e-07 30.2 2.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family Zn_Tnp_IS1595 PF12760.2 gi|148643656|ref|YP_001274169.1| - 0.00061 19.5 2.0 0.0015 18.2 1.4 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148643656|ref|YP_001274169.1| - 0.03 13.6 1.7 0.28 10.5 1.1 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|148643656|ref|YP_001274169.1| - 0.063 13.2 3.8 3.5 7.6 1.0 2.8 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|148643656|ref|YP_001274169.1| - 0.098 12.9 0.2 0.31 11.3 0.1 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|148643656|ref|YP_001274169.1| - 0.33 10.6 4.6 6 6.5 3.2 2.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|148643656|ref|YP_001274169.1| - 0.68 10.0 9.3 0.53 10.3 0.4 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TetR_C_8 PF14278.1 gi|148643656|ref|YP_001274169.1| - 1.3 9.4 6.9 0.75 10.2 0.5 3.6 2 1 0 3 3 3 0 Transcriptional regulator C-terminal region Transposase_mut PF00872.13 gi|148643656|ref|YP_001274169.1| - 4.1 5.8 7.2 25 3.2 2.6 2.9 2 1 1 3 3 3 0 Transposase, Mutator family Methyltransf_11 PF08241.7 gi|148643658|ref|YP_001274171.1| - 4.5e-13 49.5 0.0 7.3e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|148643658|ref|YP_001274171.1| - 1.3e-09 37.8 0.0 2.4e-09 36.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148643658|ref|YP_001274171.1| - 7.9e-08 32.1 0.0 1.1e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|148643658|ref|YP_001274171.1| - 1.4e-05 25.4 0.0 5.9e-05 23.4 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|148643658|ref|YP_001274171.1| - 3.3e-05 23.6 0.0 4.6e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.13 gi|148643658|ref|YP_001274171.1| - 0.00028 20.0 0.0 0.00035 19.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|148643658|ref|YP_001274171.1| - 0.0032 17.5 0.0 0.0046 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|148643658|ref|YP_001274171.1| - 0.0039 17.7 0.0 0.012 16.2 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|148643658|ref|YP_001274171.1| - 0.0056 17.0 0.0 0.012 15.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|148643658|ref|YP_001274171.1| - 0.051 12.6 0.0 0.079 12.0 0.0 1.4 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|148643659|ref|YP_001274172.1| - 9.4e-10 38.8 0.0 1.7e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|148643659|ref|YP_001274172.1| - 3.4e-05 23.4 0.0 4.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|148643659|ref|YP_001274172.1| - 0.00094 19.6 0.0 0.0021 18.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|148643659|ref|YP_001274172.1| - 0.0014 18.3 0.1 0.002 17.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|148643659|ref|YP_001274172.1| - 0.031 12.6 0.0 0.038 12.3 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_25 PF13649.1 gi|148643659|ref|YP_001274172.1| - 0.035 14.4 0.0 0.061 13.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain PLDc_2 PF13091.1 gi|148643659|ref|YP_001274172.1| - 0.069 12.8 0.3 0.13 11.9 0.2 1.4 1 0 0 1 1 1 0 PLD-like domain SH3_1 PF00018.23 gi|148643659|ref|YP_001274172.1| - 0.15 11.5 0.5 1.8 8.0 0.1 2.5 3 0 0 3 3 3 0 SH3 domain Hexapep PF00132.19 gi|148643660|ref|YP_001274173.1| - 1.6e-11 43.1 3.3 1.7e-06 27.2 0.1 3.0 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|148643660|ref|YP_001274173.1| - 2.9e-08 33.1 3.3 4.1e-05 23.0 0.0 2.5 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Dicty_CAD PF05720.7 gi|148643661|ref|YP_001274174.1| - 6.7e-05 22.4 0.1 0.00014 21.4 0.1 1.6 1 0 0 1 1 1 1 Cell-cell adhesion domain Glyphos_transf PF04464.9 gi|148643662|ref|YP_001274175.1| - 1.6e-59 201.5 16.8 3.2e-59 200.5 11.7 1.5 1 0 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Glycos_transf_2 PF00535.21 gi|148643662|ref|YP_001274175.1| - 1e-27 96.8 0.8 4.4e-27 94.8 0.1 2.4 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|148643662|ref|YP_001274175.1| - 1.6e-14 53.6 3.7 1.2e-13 50.7 2.6 2.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|148643662|ref|YP_001274175.1| - 6.1e-08 32.7 0.0 1.1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|148643662|ref|YP_001274175.1| - 0.00077 19.7 0.1 0.0041 17.3 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|148643662|ref|YP_001274175.1| - 0.0027 17.4 0.0 0.016 14.9 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|148643662|ref|YP_001274175.1| - 0.091 12.0 0.0 0.21 10.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 21 DUF167 PF02594.11 gi|148643663|ref|YP_001274176.1| - 1.5e-21 76.0 0.3 1.8e-21 75.8 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 RNA_pol_Rpb1_7 PF04990.7 gi|148643663|ref|YP_001274176.1| - 0.038 13.6 0.1 0.044 13.4 0.1 1.1 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 7 DUF3137 PF11335.3 gi|148643663|ref|YP_001274176.1| - 0.043 13.4 0.2 0.056 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3137) SUI1 PF01253.17 gi|148643663|ref|YP_001274176.1| - 0.059 13.1 0.2 0.081 12.7 0.1 1.3 1 0 0 1 1 1 0 Translation initiation factor SUI1 KH_1 PF00013.24 gi|148643663|ref|YP_001274176.1| - 0.078 12.6 1.3 1.6 8.4 0.3 2.2 2 0 0 2 2 2 0 KH domain KH_3 PF13014.1 gi|148643663|ref|YP_001274176.1| - 0.18 11.5 0.8 1.3 8.7 0.2 2.3 2 0 0 2 2 2 0 KH domain NTP_transferase PF00483.18 gi|148643664|ref|YP_001274177.1| - 1.7e-28 99.5 0.1 2.5e-28 99.0 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|148643664|ref|YP_001274177.1| - 4.9e-10 39.7 0.0 8.1e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|148643664|ref|YP_001274177.1| - 0.0056 16.2 0.0 0.0085 15.6 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|148643664|ref|YP_001274177.1| - 0.075 12.6 0.0 0.21 11.1 0.0 1.7 1 1 1 2 2 2 0 Cytidylyltransferase Latexin PF06907.7 gi|148643665|ref|YP_001274178.1| - 0.014 14.5 0.1 0.014 14.5 0.1 1.0 1 0 0 1 1 1 0 Latexin PRESAN PF09687.5 gi|148643665|ref|YP_001274178.1| - 0.047 13.7 3.4 0.055 13.5 2.3 1.2 1 0 0 1 1 1 0 Plasmodium RESA N-terminal Radical_SAM PF04055.16 gi|148643666|ref|YP_001274179.1| - 1.1e-14 54.8 0.0 2.1e-14 54.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|148643666|ref|YP_001274179.1| - 2.3e-08 34.2 1.2 2.3e-08 34.2 0.8 2.2 3 0 0 3 3 3 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|148643666|ref|YP_001274179.1| - 2.1e-07 30.9 0.0 4.6e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|148643666|ref|YP_001274179.1| - 5.3e-07 29.8 0.1 1.5e-06 28.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Lar_restr_allev PF14354.1 gi|148643667|ref|YP_001274180.1| - 2.8e-09 37.1 0.2 3.2e-09 36.9 0.1 1.0 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|148643667|ref|YP_001274180.1| - 5.3e-05 23.0 2.7 0.1 12.5 0.3 2.2 2 0 0 2 2 2 2 Zinc ribbon domain zf-ISL3 PF14690.1 gi|148643667|ref|YP_001274180.1| - 0.0024 17.8 1.1 0.032 14.2 0.4 2.1 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2387 PF09526.5 gi|148643667|ref|YP_001274180.1| - 0.0032 17.3 2.7 0.0059 16.5 1.9 1.4 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) zf-Mss51 PF13824.1 gi|148643667|ref|YP_001274180.1| - 0.0048 16.7 3.3 0.18 11.6 2.5 2.1 1 1 0 1 1 1 1 Zinc-finger of mitochondrial splicing suppressor 51 zf-DNA_Pol PF08996.5 gi|148643667|ref|YP_001274180.1| - 0.0051 16.1 0.2 0.0052 16.1 0.1 1.0 1 0 0 1 1 1 1 DNA Polymerase alpha zinc finger zf-ribbon_3 PF13248.1 gi|148643667|ref|YP_001274180.1| - 0.012 14.7 1.7 1.4 8.2 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2082 PF09855.4 gi|148643667|ref|YP_001274180.1| - 0.017 14.9 3.6 1.6 8.6 2.5 2.1 1 1 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_5 PF13719.1 gi|148643667|ref|YP_001274180.1| - 0.019 14.5 2.6 0.69 9.5 1.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|148643667|ref|YP_001274180.1| - 0.02 14.5 0.8 0.95 9.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|148643667|ref|YP_001274180.1| - 0.023 14.4 0.5 1.2 9.0 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF35_N PF12172.3 gi|148643667|ref|YP_001274180.1| - 0.026 14.4 1.1 1.6 8.7 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.8 gi|148643667|ref|YP_001274180.1| - 0.043 13.3 0.8 0.71 9.3 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|148643667|ref|YP_001274180.1| - 0.048 13.4 0.6 0.08 12.7 0.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|148643667|ref|YP_001274180.1| - 0.063 12.6 5.6 0.48 9.7 3.9 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|148643667|ref|YP_001274180.1| - 0.077 12.6 2.7 0.33 10.6 1.9 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|148643667|ref|YP_001274180.1| - 0.08 12.5 2.9 1.6 8.4 0.4 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-TFIIB PF13453.1 gi|148643667|ref|YP_001274180.1| - 0.093 11.9 1.3 0.19 10.9 0.9 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger HypA PF01155.14 gi|148643667|ref|YP_001274180.1| - 0.1 12.2 1.1 3.9 7.1 0.1 2.1 1 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|148643667|ref|YP_001274180.1| - 0.11 12.2 1.3 9.2 6.0 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal Ogr_Delta PF04606.7 gi|148643667|ref|YP_001274180.1| - 0.11 12.1 2.0 0.3 10.7 1.4 1.7 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.14 gi|148643667|ref|YP_001274180.1| - 0.12 11.8 1.1 2.7 7.5 0.2 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Fumerase PF05681.9 gi|148643667|ref|YP_001274180.1| - 0.14 11.2 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 Fumarate hydratase (Fumerase) Terminase_GpA PF05876.7 gi|148643667|ref|YP_001274180.1| - 0.15 10.3 0.5 0.16 10.3 0.4 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Prim_Zn_Ribbon PF08273.7 gi|148643667|ref|YP_001274180.1| - 0.18 11.9 5.3 0.51 10.4 3.7 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-NADH-PPase PF09297.6 gi|148643667|ref|YP_001274180.1| - 0.21 11.1 2.1 7.4 6.1 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|148643667|ref|YP_001274180.1| - 0.33 10.5 4.0 3.3 7.3 1.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|148643667|ref|YP_001274180.1| - 0.33 10.4 1.9 1.5 8.3 0.5 2.0 1 1 1 2 2 2 0 Transposase zinc-binding domain UPF0547 PF10571.4 gi|148643667|ref|YP_001274180.1| - 0.45 10.2 5.5 0.79 9.4 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RNA_POL_M_15KD PF02150.11 gi|148643667|ref|YP_001274180.1| - 0.62 9.8 4.0 4.7 6.9 0.0 2.5 3 0 0 3 3 2 0 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.15 gi|148643667|ref|YP_001274180.1| - 0.81 9.6 4.0 3.7 7.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin zf-C2H2_4 PF13894.1 gi|148643667|ref|YP_001274180.1| - 0.98 9.9 4.1 13 6.4 1.4 2.3 2 1 0 2 2 2 0 C2H2-type zinc finger zf-HYPF PF07503.7 gi|148643667|ref|YP_001274180.1| - 1 8.8 3.6 19 4.8 1.7 2.7 2 1 0 2 2 2 0 HypF finger zf-C2HC_2 PF13913.1 gi|148643667|ref|YP_001274180.1| - 1.3 8.7 3.6 2.3 7.9 0.5 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C2H2 PF00096.21 gi|148643667|ref|YP_001274180.1| - 1.4 9.4 7.6 3.2 8.2 0.1 2.5 2 1 0 2 2 2 0 Zinc finger, C2H2 type Zn_Tnp_IS1595 PF12760.2 gi|148643667|ref|YP_001274180.1| - 8.6 6.2 8.9 2.3 8.0 2.8 2.2 2 1 0 2 2 1 0 Transposase zinc-ribbon domain Aldo_ket_red PF00248.16 gi|148643668|ref|YP_001274181.1| - 3.8e-51 173.5 0.2 5e-51 173.2 0.1 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|148643668|ref|YP_001274181.1| - 7.6e-11 42.1 7.9 1.9e-10 40.8 5.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148643668|ref|YP_001274181.1| - 4.6e-07 30.0 8.2 4.4e-06 26.8 6.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148643668|ref|YP_001274181.1| - 4e-06 26.7 6.6 7.9e-06 25.8 4.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148643668|ref|YP_001274181.1| - 6.6e-05 22.6 6.3 0.01 15.6 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148643668|ref|YP_001274181.1| - 0.00015 22.1 3.6 0.014 15.8 0.1 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|148643668|ref|YP_001274181.1| - 0.0068 16.0 2.1 0.22 11.1 0.1 2.4 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.2 gi|148643668|ref|YP_001274181.1| - 0.0077 16.1 1.0 0.0077 16.1 0.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Root_cap PF06830.6 gi|148643668|ref|YP_001274181.1| - 0.01 15.6 0.0 0.023 14.5 0.0 1.5 1 0 0 1 1 1 0 Root cap Fer4 PF00037.22 gi|148643668|ref|YP_001274181.1| - 0.023 14.2 9.1 0.055 13.0 1.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148643668|ref|YP_001274181.1| - 0.028 15.1 4.2 0.97 10.2 0.6 2.7 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|148643668|ref|YP_001274181.1| - 0.056 13.7 14.3 0.074 13.4 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|148643668|ref|YP_001274181.1| - 0.096 12.5 6.5 0.8 9.6 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|148643668|ref|YP_001274181.1| - 0.14 12.0 9.7 0.05 13.4 1.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148643668|ref|YP_001274181.1| - 2.7 8.4 13.9 0.31 11.4 1.4 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain SBP_bac_11 PF13531.1 gi|148643669|ref|YP_001274182.1| - 1.2e-52 178.8 0.0 1.4e-52 178.6 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|148643669|ref|YP_001274182.1| - 5.5e-19 69.0 0.7 1.8e-18 67.3 0.5 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|148643669|ref|YP_001274182.1| - 7.9e-07 29.0 0.4 0.018 14.7 0.0 2.2 1 1 1 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.2 gi|148643669|ref|YP_001274182.1| - 7e-06 25.7 0.1 2.1e-05 24.1 0.0 1.7 1 1 1 2 2 2 1 PBP superfamily domain PBP_like PF12727.2 gi|148643669|ref|YP_001274182.1| - 6.7e-05 21.9 0.1 0.0002 20.3 0.1 1.8 1 1 0 1 1 1 1 PBP superfamily domain LysR_substrate PF03466.15 gi|148643669|ref|YP_001274182.1| - 0.00014 21.0 0.0 0.0046 16.0 0.0 2.7 2 1 0 2 2 2 1 LysR substrate binding domain SBP_bac_6 PF13343.1 gi|148643669|ref|YP_001274182.1| - 0.0024 17.2 1.0 0.041 13.2 0.0 2.5 3 0 0 3 3 3 1 Bacterial extracellular solute-binding protein DUF1310 PF07006.6 gi|148643669|ref|YP_001274182.1| - 0.54 9.7 4.2 4.7 6.7 0.0 3.1 4 1 0 4 4 4 0 Protein of unknown function (DUF1310) BPD_transp_1 PF00528.17 gi|148643670|ref|YP_001274183.1| - 6.2e-25 87.7 15.9 7.8e-25 87.4 11.0 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|148643671|ref|YP_001274184.1| - 2.9e-31 108.5 0.0 4.8e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|148643671|ref|YP_001274184.1| - 3.1e-06 27.3 3.8 0.00017 21.6 0.1 3.0 1 1 2 3 3 3 2 AAA domain SMC_N PF02463.14 gi|148643671|ref|YP_001274184.1| - 3.3e-05 23.2 0.2 0.00086 18.5 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|148643671|ref|YP_001274184.1| - 0.0021 18.2 0.1 0.021 15.0 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|148643671|ref|YP_001274184.1| - 0.011 14.8 0.8 1.3 8.0 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|148643671|ref|YP_001274184.1| - 0.016 15.3 0.0 0.044 13.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|148643671|ref|YP_001274184.1| - 0.029 14.6 0.9 0.046 14.0 0.6 1.7 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|148643671|ref|YP_001274184.1| - 0.043 12.4 0.9 0.078 11.6 0.3 1.6 1 1 1 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|148643671|ref|YP_001274184.1| - 0.044 13.7 0.0 0.067 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.1 gi|148643671|ref|YP_001274184.1| - 0.05 13.5 0.4 0.39 10.6 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit UDPG_MGDP_dh_N PF03721.9 gi|148643672|ref|YP_001274185.1| - 3.5e-62 209.0 0.7 4.7e-62 208.6 0.5 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|148643672|ref|YP_001274185.1| - 8.6e-31 106.0 1.8 2.3e-30 104.6 0.1 2.4 3 1 1 4 4 4 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_Gly3P_dh_N PF01210.18 gi|148643672|ref|YP_001274185.1| - 6.4e-07 29.2 0.6 4.1e-06 26.6 0.1 2.4 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|148643672|ref|YP_001274185.1| - 9.8e-06 25.9 0.2 0.0012 19.2 0.0 3.4 1 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|148643672|ref|YP_001274185.1| - 0.00031 21.0 0.6 0.0082 16.5 0.1 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase OTCace PF00185.19 gi|148643672|ref|YP_001274185.1| - 0.00075 19.4 0.0 0.36 10.6 0.0 2.4 1 1 1 2 2 2 2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ApbA PF02558.11 gi|148643672|ref|YP_001274185.1| - 0.0018 17.7 0.0 0.0037 16.7 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|148643672|ref|YP_001274185.1| - 0.0026 17.6 0.4 0.011 15.6 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|148643672|ref|YP_001274185.1| - 0.0048 16.5 0.0 0.011 15.3 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|148643672|ref|YP_001274185.1| - 0.028 13.5 0.1 0.45 9.6 0.1 2.3 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|148643672|ref|YP_001274185.1| - 0.033 13.7 0.1 0.27 10.7 0.0 2.4 1 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|148643672|ref|YP_001274185.1| - 0.051 13.8 0.0 0.11 12.7 0.0 1.9 1 1 0 1 1 1 0 Putative NAD(P)-binding Phage_term_smal PF05944.7 gi|148643672|ref|YP_001274185.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Phage small terminase subunit FAD_binding_3 PF01494.14 gi|148643672|ref|YP_001274185.1| - 0.17 10.9 0.0 0.27 10.2 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|148643673|ref|YP_001274186.1| - 7.6e-29 99.9 0.1 1.2e-28 99.3 0.0 1.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HrcA_DNA-bdg PF03444.10 gi|148643674|ref|YP_001274187.1| - 7e-37 124.7 0.2 1.3e-36 123.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|148643674|ref|YP_001274187.1| - 7.1e-30 102.5 4.3 2.3e-15 56.0 0.7 2.9 3 0 0 3 3 3 2 CBS domain Rrf2 PF02082.15 gi|148643674|ref|YP_001274187.1| - 9.4e-08 32.0 0.1 2.2e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|148643674|ref|YP_001274187.1| - 7.3e-06 25.5 0.0 2.2e-05 24.0 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|148643674|ref|YP_001274187.1| - 0.014 15.0 0.0 0.037 13.6 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|148643674|ref|YP_001274187.1| - 0.014 15.0 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Peptidase_S55 PF05580.7 gi|148643674|ref|YP_001274187.1| - 0.08 12.3 1.5 3.2 7.1 0.0 2.5 1 1 2 3 3 3 0 SpoIVB peptidase S55 MarR_2 PF12802.2 gi|148643674|ref|YP_001274187.1| - 0.097 12.3 0.0 0.48 10.1 0.0 2.2 3 0 0 3 3 3 0 MarR family DS PF01916.12 gi|148643675|ref|YP_001274188.1| - 3e-89 299.0 0.1 3.5e-89 298.8 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase AA_kinase PF00696.23 gi|148643675|ref|YP_001274188.1| - 0.0058 16.2 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Amino acid kinase family TraC PF07820.7 gi|148643675|ref|YP_001274188.1| - 0.044 13.9 0.1 0.1 12.7 0.1 1.5 1 0 0 1 1 1 0 TraC-like protein EII-GUT PF03608.8 gi|148643676|ref|YP_001274189.1| - 7.4 6.3 12.8 0.14 12.0 1.4 2.5 2 1 1 3 3 3 0 PTS system enzyme II sorbitol-specific factor OMPdecase PF00215.19 gi|148643677|ref|YP_001274190.1| - 1.5e-40 139.0 0.8 2.1e-40 138.5 0.6 1.2 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|148643677|ref|YP_001274190.1| - 0.0024 17.1 0.2 0.46 9.6 0.0 2.2 1 1 0 2 2 2 2 PcrB family CbiM PF01891.11 gi|148643678|ref|YP_001274191.1| - 5.4e-55 186.1 19.2 6.1e-55 186.0 13.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF1422 PF07226.6 gi|148643678|ref|YP_001274191.1| - 0.82 9.4 5.7 2.5 7.8 2.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1422) CbiN PF02553.10 gi|148643679|ref|YP_001274192.1| - 5.9e-32 109.5 0.7 7.4e-32 109.1 0.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN DUF3309 PF11752.3 gi|148643679|ref|YP_001274192.1| - 0.66 9.7 4.0 0.25 11.1 0.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3309) CbiQ PF02361.11 gi|148643680|ref|YP_001274193.1| - 8.9e-33 113.7 10.0 1.1e-32 113.4 6.9 1.0 1 0 0 1 1 1 1 Cobalt transport protein SplA PF11132.3 gi|148643680|ref|YP_001274193.1| - 0.05 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator protein (SplA) DUF1304 PF06993.7 gi|148643680|ref|YP_001274193.1| - 1.8 8.2 12.6 0.16 11.6 4.8 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1304) ABC_tran PF00005.22 gi|148643681|ref|YP_001274194.1| - 1.3e-35 122.6 0.0 2.1e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|148643681|ref|YP_001274194.1| - 1.6e-15 57.8 5.9 3.4e-12 46.9 0.0 2.9 2 1 1 3 3 3 2 AAA domain SMC_N PF02463.14 gi|148643681|ref|YP_001274194.1| - 1.7e-09 37.2 0.1 3.3e-08 33.0 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|148643681|ref|YP_001274194.1| - 4.8e-06 25.8 8.6 0.00074 18.6 0.0 3.0 2 1 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|148643681|ref|YP_001274194.1| - 0.00093 19.5 0.9 0.0098 16.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|148643681|ref|YP_001274194.1| - 0.0011 18.5 0.1 0.0024 17.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|148643681|ref|YP_001274194.1| - 0.024 14.5 0.0 0.18 11.7 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|148643681|ref|YP_001274194.1| - 0.026 13.7 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Val_tRNA-synt_C PF10458.4 gi|148643681|ref|YP_001274194.1| - 0.059 13.4 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 Valyl tRNA synthetase tRNA binding arm BCA_ABC_TP_C PF12399.3 gi|148643681|ref|YP_001274194.1| - 0.13 11.9 0.2 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter DMRL_synthase PF00885.14 gi|148643682|ref|YP_001274195.1| - 2.7e-20 72.5 0.1 3.1e-20 72.3 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Response_reg PF00072.19 gi|148643682|ref|YP_001274195.1| - 0.063 13.2 0.2 0.17 11.9 0.0 1.7 2 0 0 2 2 2 0 Response regulator receiver domain Glycos_transf_2 PF00535.21 gi|148643683|ref|YP_001274196.1| - 2.6e-26 92.3 0.1 3.8e-26 91.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643683|ref|YP_001274196.1| - 3.6e-08 33.4 0.0 4.4e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Peripla_BP_4 PF13407.1 gi|148643683|ref|YP_001274196.1| - 0.024 13.9 0.1 3.9 6.7 0.0 2.2 1 1 0 2 2 2 0 Periplasmic binding protein domain DUF2304 PF10066.4 gi|148643684|ref|YP_001274197.1| - 1.2e-35 121.8 10.2 1.4e-35 121.6 7.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) DUF2681 PF10883.3 gi|148643684|ref|YP_001274197.1| - 7.8e-05 22.8 1.5 0.00085 19.4 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF2681) Sigma_reg_N PF13800.1 gi|148643684|ref|YP_001274197.1| - 0.023 14.6 0.9 0.023 14.6 0.6 2.3 1 1 1 2 2 2 0 Sigma factor regulator N-terminal Lactate_perm PF02652.9 gi|148643684|ref|YP_001274197.1| - 0.066 11.6 8.6 0.075 11.5 6.0 1.0 1 0 0 1 1 1 0 L-lactate permease YvrJ PF12841.2 gi|148643684|ref|YP_001274197.1| - 0.13 11.6 0.3 0.23 10.8 0.2 1.4 1 0 0 1 1 1 0 YvrJ protein family DUF2663 PF10864.3 gi|148643684|ref|YP_001274197.1| - 0.17 12.0 1.1 0.21 11.8 0.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2663) DivIC PF04977.10 gi|148643684|ref|YP_001274197.1| - 0.18 11.3 0.1 0.18 11.3 0.0 2.2 3 0 0 3 3 3 0 Septum formation initiator DUF1049 PF06305.6 gi|148643684|ref|YP_001274197.1| - 0.19 11.2 0.0 0.19 11.2 0.0 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1049) Vpu PF00558.14 gi|148643684|ref|YP_001274197.1| - 0.29 10.7 0.1 0.29 10.7 0.1 2.3 2 1 1 3 3 2 0 Vpu protein MFS_2 PF13347.1 gi|148643684|ref|YP_001274197.1| - 0.41 8.9 12.3 0.47 8.7 8.5 1.0 1 0 0 1 1 1 0 MFS/sugar transport protein ABC2_membrane_5 PF13346.1 gi|148643684|ref|YP_001274197.1| - 0.52 9.5 13.6 0.59 9.3 9.5 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein RseC_MucC PF04246.7 gi|148643684|ref|YP_001274197.1| - 2.2 7.8 9.0 1.6 8.2 0.3 2.1 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC YjgP_YjgQ PF03739.9 gi|148643684|ref|YP_001274197.1| - 3.9 6.1 9.7 6.2 5.4 0.0 2.0 1 1 1 2 2 2 0 Predicted permease YjgP/YjgQ family YfhO PF09586.5 gi|148643684|ref|YP_001274197.1| - 6.1 4.7 8.6 6.5 4.6 6.0 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DPM3 PF08285.6 gi|148643684|ref|YP_001274197.1| - 7.2 6.5 8.4 1.6 8.6 2.8 2.0 1 1 1 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) CCG PF02754.11 gi|148643685|ref|YP_001274198.1| - 2.3e-31 107.6 8.8 1.2e-17 63.6 1.6 2.1 2 0 0 2 2 2 2 Cysteine-rich domain DUF581 PF04570.9 gi|148643685|ref|YP_001274198.1| - 0.032 13.5 1.7 3.5 6.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF581) DUF162 PF02589.10 gi|148643686|ref|YP_001274199.1| - 4.1e-43 147.0 1.0 5.9e-43 146.5 0.7 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|148643686|ref|YP_001274199.1| - 2.9e-09 36.8 8.2 5.9e-09 35.8 5.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|148643686|ref|YP_001274199.1| - 5.6e-08 32.9 7.2 1.8e-07 31.2 5.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148643686|ref|YP_001274199.1| - 2.6e-07 30.8 4.7 6.1e-07 29.6 3.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|148643686|ref|YP_001274199.1| - 6.5e-07 29.6 8.0 9.4e-06 25.9 5.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|148643686|ref|YP_001274199.1| - 7e-07 29.5 5.0 0.0024 18.2 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148643686|ref|YP_001274199.1| - 1.3e-06 28.0 10.0 2.5e-06 27.1 6.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|148643686|ref|YP_001274199.1| - 1e-05 24.9 16.4 0.0066 16.0 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|148643686|ref|YP_001274199.1| - 0.00027 20.7 10.7 0.054 13.3 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|148643686|ref|YP_001274199.1| - 0.00029 20.9 11.6 0.069 13.5 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|148643686|ref|YP_001274199.1| - 0.00029 20.5 16.5 0.073 12.9 4.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|148643686|ref|YP_001274199.1| - 0.00047 19.9 16.7 0.087 12.7 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|148643686|ref|YP_001274199.1| - 0.0046 17.4 16.9 0.25 11.9 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|148643686|ref|YP_001274199.1| - 0.019 15.7 12.8 0.069 13.8 7.9 2.4 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|148643686|ref|YP_001274199.1| - 0.032 14.8 3.6 1.4 9.5 0.3 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|148643686|ref|YP_001274199.1| - 0.14 11.7 5.3 2.5 7.7 0.5 2.5 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Glycos_transf_2 PF00535.21 gi|148643687|ref|YP_001274200.1| - 7.3e-38 129.8 0.6 1.2e-37 129.1 0.4 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|148643687|ref|YP_001274200.1| - 6.4e-14 52.2 0.0 8.8e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|148643687|ref|YP_001274200.1| - 2.3e-08 33.4 0.1 3.3e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|148643687|ref|YP_001274200.1| - 0.035 14.4 0.0 0.077 13.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 VIT1 PF01988.14 gi|148643687|ref|YP_001274200.1| - 0.039 13.4 0.4 0.051 13.0 0.2 1.2 1 0 0 1 1 1 0 VIT family Caveolin PF01146.12 gi|148643687|ref|YP_001274200.1| - 0.25 10.9 2.9 0.44 10.1 2.0 1.3 1 0 0 1 1 1 0 Caveolin DUF556 PF04476.8 gi|148643688|ref|YP_001274201.1| - 6.8e-124 411.6 3.7 7.6e-124 411.5 2.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) DeoC PF01791.4 gi|148643688|ref|YP_001274201.1| - 0.0014 18.0 1.3 0.14 11.4 0.4 2.8 2 1 1 3 3 3 2 DeoC/LacD family aldolase QRPTase_C PF01729.14 gi|148643688|ref|YP_001274201.1| - 0.0038 16.7 0.1 0.023 14.2 0.1 2.2 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain TIM-br_sig_trns PF09370.5 gi|148643688|ref|YP_001274201.1| - 0.05 12.6 0.2 0.2 10.6 0.1 2.0 3 0 0 3 3 3 0 TIM-barrel signal transduction protein IMPDH PF00478.20 gi|148643689|ref|YP_001274202.1| - 6.4e-137 456.1 8.4 7.3e-137 455.9 5.8 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|148643689|ref|YP_001274202.1| - 2.9e-27 94.1 4.4 6.3e-14 51.4 0.2 2.9 2 0 0 2 2 2 2 CBS domain FMN_dh PF01070.13 gi|148643689|ref|YP_001274202.1| - 2.7e-12 46.2 5.9 1.1e-10 40.9 4.1 3.0 2 1 0 2 2 2 1 FMN-dependent dehydrogenase NMO PF03060.10 gi|148643689|ref|YP_001274202.1| - 2.8e-11 43.1 11.5 3.5e-09 36.2 8.0 2.2 1 1 0 1 1 1 1 Nitronate monooxygenase Glu_synthase PF01645.12 gi|148643689|ref|YP_001274202.1| - 3.9e-05 22.7 5.0 7.7e-05 21.7 3.4 1.5 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.16 gi|148643689|ref|YP_001274202.1| - 0.00028 20.2 8.8 0.00042 19.6 0.2 3.3 3 1 1 4 4 4 1 Histidine biosynthesis protein Dus PF01207.12 gi|148643689|ref|YP_001274202.1| - 0.00035 19.5 0.0 0.00068 18.5 0.0 1.5 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|148643689|ref|YP_001274202.1| - 0.00068 18.7 1.5 0.00068 18.7 1.0 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG EAL PF00563.15 gi|148643689|ref|YP_001274202.1| - 0.0067 15.9 1.7 3.5 7.0 0.1 3.1 3 0 0 3 3 3 1 EAL domain DHO_dh PF01180.16 gi|148643689|ref|YP_001274202.1| - 0.009 14.9 1.6 0.031 13.2 1.1 1.9 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase PEP_mutase PF13714.1 gi|148643689|ref|YP_001274202.1| - 0.0092 15.2 0.9 0.063 12.4 0.1 2.2 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase PcrB PF01884.12 gi|148643689|ref|YP_001274202.1| - 0.018 14.3 0.9 0.018 14.3 0.6 2.8 3 0 0 3 3 3 0 PcrB family Beta_elim_lyase PF01212.16 gi|148643689|ref|YP_001274202.1| - 0.02 14.0 0.3 0.032 13.3 0.2 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase IGPS PF00218.16 gi|148643689|ref|YP_001274202.1| - 0.031 13.3 0.4 2.6 7.0 0.0 2.8 3 0 0 3 3 3 0 Indole-3-glycerol phosphate synthase H_kinase_N PF12282.3 gi|148643689|ref|YP_001274202.1| - 0.075 12.6 0.3 3.2 7.3 0.0 2.5 1 1 1 2 2 2 0 Signal transduction histidine kinase Ribosomal_L37ae PF01780.14 gi|148643690|ref|YP_001274203.1| - 8.2e-37 124.9 4.9 8.7e-37 124.8 3.4 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|148643690|ref|YP_001274203.1| - 0.00091 18.9 2.2 0.0013 18.5 1.5 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain IBR PF01485.16 gi|148643690|ref|YP_001274203.1| - 0.001 18.8 1.3 0.0014 18.4 0.9 1.1 1 0 0 1 1 1 1 IBR domain zf-FPG_IleRS PF06827.9 gi|148643690|ref|YP_001274203.1| - 0.0061 16.1 2.1 0.13 11.9 0.1 2.5 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS OrfB_Zn_ribbon PF07282.6 gi|148643690|ref|YP_001274203.1| - 0.014 15.0 1.0 0.014 15.0 0.7 1.6 2 0 0 2 2 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|148643690|ref|YP_001274203.1| - 0.018 14.8 0.8 2.9 7.8 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|148643690|ref|YP_001274203.1| - 0.024 14.5 2.2 2.1 8.3 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Rep_fac-A_C PF08646.5 gi|148643690|ref|YP_001274203.1| - 0.042 13.5 1.8 0.055 13.1 1.2 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain FYVE PF01363.16 gi|148643690|ref|YP_001274203.1| - 0.048 13.5 1.5 0.072 12.9 1.1 1.4 1 1 0 1 1 1 0 FYVE zinc finger zf-C2H2_4 PF13894.1 gi|148643690|ref|YP_001274203.1| - 0.076 13.3 2.1 2.7 8.5 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|148643690|ref|YP_001274203.1| - 0.077 13.3 2.7 6 7.4 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type ADK_lid PF05191.9 gi|148643690|ref|YP_001274203.1| - 0.093 12.4 1.8 3.8 7.2 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.7 gi|148643690|ref|YP_001274203.1| - 0.094 12.0 0.9 0.3 10.4 0.6 1.7 1 1 1 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|148643690|ref|YP_001274203.1| - 0.094 11.9 1.1 0.16 11.2 0.8 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger A2L_zn_ribbon PF08792.5 gi|148643690|ref|YP_001274203.1| - 0.095 12.1 0.2 0.15 11.5 0.1 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain C1_1 PF00130.17 gi|148643690|ref|YP_001274203.1| - 0.1 12.3 1.5 0.15 11.7 1.0 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.1 gi|148643690|ref|YP_001274203.1| - 0.1 11.8 1.3 6.5 6.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_6 PF13912.1 gi|148643690|ref|YP_001274203.1| - 0.11 12.4 0.9 6.4 6.8 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zinc-ribbons_6 PF07191.7 gi|148643690|ref|YP_001274203.1| - 0.12 12.2 0.4 0.39 10.5 0.5 1.6 1 1 1 2 2 2 0 zinc-ribbons DZR PF12773.2 gi|148643690|ref|YP_001274203.1| - 0.12 12.1 2.2 0.29 10.9 1.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-HIT PF04438.11 gi|148643690|ref|YP_001274203.1| - 0.13 11.9 1.9 6.5 6.4 0.4 2.2 2 0 0 2 2 2 0 HIT zinc finger zinc_ribbon_5 PF13719.1 gi|148643690|ref|YP_001274203.1| - 0.13 11.8 3.6 0.79 9.3 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|148643690|ref|YP_001274203.1| - 0.25 11.0 3.8 1.5 8.5 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Mut7-C PF01927.11 gi|148643690|ref|YP_001274203.1| - 0.31 11.0 3.7 1.3 8.9 2.5 1.8 1 1 0 1 1 1 0 Mut7-C RNAse domain zf-H2C2_2 PF13465.1 gi|148643690|ref|YP_001274203.1| - 0.43 10.9 5.1 7.1 7.1 0.7 2.2 1 1 1 2 2 2 0 Zinc-finger double domain zinc_ribbon_2 PF13240.1 gi|148643690|ref|YP_001274203.1| - 0.84 9.2 3.8 15 5.2 0.5 2.1 1 1 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.8 gi|148643690|ref|YP_001274203.1| - 1 9.0 4.9 2.4 7.8 3.4 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_ribbon_recom PF13408.1 gi|148643690|ref|YP_001274203.1| - 2 8.7 4.8 11 6.3 0.3 2.4 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.8 gi|148643691|ref|YP_001274204.1| - 2.1e-05 23.8 5.1 3.2e-05 23.2 3.5 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|148643691|ref|YP_001274204.1| - 0.00032 20.0 1.8 0.097 12.1 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|148643691|ref|YP_001274204.1| - 0.0004 20.1 0.6 0.00047 19.9 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|148643691|ref|YP_001274204.1| - 0.00049 19.2 4.5 0.0012 17.9 3.2 1.6 1 1 0 1 1 1 1 zinc-ribbon domain RNHCP PF12647.2 gi|148643691|ref|YP_001274204.1| - 0.0049 16.6 0.5 0.0049 16.6 0.4 1.1 1 0 0 1 1 1 1 RNHCP domain zinc_ribbon_4 PF13717.1 gi|148643691|ref|YP_001274204.1| - 0.0059 16.2 0.8 2.1 8.1 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|148643691|ref|YP_001274204.1| - 0.0069 15.9 1.1 1.9 8.1 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|148643691|ref|YP_001274204.1| - 0.0072 15.8 2.0 0.56 9.7 0.1 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zf-HIT PF04438.11 gi|148643691|ref|YP_001274204.1| - 0.0086 15.6 6.6 0.082 12.5 0.3 2.1 2 0 0 2 2 2 1 HIT zinc finger HypA PF01155.14 gi|148643691|ref|YP_001274204.1| - 0.0095 15.6 0.5 0.0095 15.6 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc-ribbons_6 PF07191.7 gi|148643691|ref|YP_001274204.1| - 0.012 15.3 2.0 0.025 14.3 1.4 1.5 1 1 0 1 1 1 0 zinc-ribbons DUF329 PF03884.9 gi|148643691|ref|YP_001274204.1| - 0.014 14.9 3.4 0.81 9.2 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-C2H2_4 PF13894.1 gi|148643691|ref|YP_001274204.1| - 0.019 15.2 2.2 1.1 9.7 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger OrfB_Zn_ribbon PF07282.6 gi|148643691|ref|YP_001274204.1| - 0.019 14.6 2.0 0.025 14.2 1.4 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Spt4 PF06093.8 gi|148643691|ref|YP_001274204.1| - 0.02 14.7 0.4 0.02 14.7 0.3 1.1 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-TFIIB PF13453.1 gi|148643691|ref|YP_001274204.1| - 0.025 13.7 1.4 2.5 7.3 0.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger UPF0547 PF10571.4 gi|148643691|ref|YP_001274204.1| - 0.026 14.1 6.2 0.1 12.3 3.6 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 zf-C3HC4_3 PF13920.1 gi|148643691|ref|YP_001274204.1| - 0.036 13.7 4.3 0.073 12.7 3.0 1.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ISL3 PF14690.1 gi|148643691|ref|YP_001274204.1| - 0.039 13.9 5.8 0.74 9.8 0.7 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|148643691|ref|YP_001274204.1| - 0.04 13.4 3.4 0.68 9.4 2.4 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2 PF00096.21 gi|148643691|ref|YP_001274204.1| - 0.049 13.9 3.4 0.38 11.1 0.2 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type TF_Zn_Ribbon PF08271.7 gi|148643691|ref|YP_001274204.1| - 0.064 12.5 0.1 0.064 12.5 0.1 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|148643691|ref|YP_001274204.1| - 0.068 13.1 6.3 0.072 13.0 3.5 1.7 2 1 0 2 2 1 0 Zinc ribbon domain DUF2072 PF09845.4 gi|148643691|ref|YP_001274204.1| - 0.07 13.0 0.5 0.07 13.0 0.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) DNA_ligase_ZBD PF03119.11 gi|148643691|ref|YP_001274204.1| - 0.076 12.7 1.8 0.81 9.4 0.2 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Mu-like_Com PF10122.4 gi|148643691|ref|YP_001274204.1| - 0.096 11.7 7.9 0.41 9.7 0.8 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com DUF4206 PF13901.1 gi|148643691|ref|YP_001274204.1| - 0.098 12.2 0.5 0.089 12.3 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) DUF2082 PF09855.4 gi|148643691|ref|YP_001274204.1| - 0.12 12.2 3.8 0.32 10.8 0.2 2.0 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) NMD3 PF04981.8 gi|148643691|ref|YP_001274204.1| - 0.12 11.4 0.9 0.12 11.4 0.6 1.0 1 0 0 1 1 1 0 NMD3 family TFIIS_C PF01096.13 gi|148643691|ref|YP_001274204.1| - 0.12 11.9 1.7 9.2 5.9 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Auto_anti-p27 PF06677.7 gi|148643691|ref|YP_001274204.1| - 0.13 12.0 1.0 11 5.8 0.0 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-FPG_IleRS PF06827.9 gi|148643691|ref|YP_001274204.1| - 0.14 11.8 5.2 0.39 10.4 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-tcix PF14952.1 gi|148643691|ref|YP_001274204.1| - 0.19 11.0 5.0 0.5 9.7 0.0 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Prok-RING_1 PF14446.1 gi|148643691|ref|YP_001274204.1| - 0.21 11.3 3.3 4.1 7.2 0.2 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Ribosomal_S27e PF01667.12 gi|148643691|ref|YP_001274204.1| - 0.22 11.0 1.0 1.4 8.5 0.0 2.0 2 0 0 2 2 2 0 Ribosomal protein S27 Ogr_Delta PF04606.7 gi|148643691|ref|YP_001274204.1| - 0.22 11.1 2.2 7.8 6.2 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger PhnA_Zn_Ribbon PF08274.7 gi|148643691|ref|YP_001274204.1| - 0.27 11.0 2.1 15 5.4 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon GFA PF04828.9 gi|148643691|ref|YP_001274204.1| - 0.27 11.1 1.4 4.9 7.1 0.2 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme SprT-like PF10263.4 gi|148643691|ref|YP_001274204.1| - 0.31 10.7 1.7 0.33 10.6 1.2 1.1 1 0 0 1 1 1 0 SprT-like family CpXC PF14353.1 gi|148643691|ref|YP_001274204.1| - 0.33 10.9 3.1 5.7 6.9 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.2 gi|148643691|ref|YP_001274204.1| - 0.51 10.1 6.5 7 6.5 4.9 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1936 PF09151.5 gi|148643691|ref|YP_001274204.1| - 0.65 9.5 3.6 3.7 7.1 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1936) zf-CCHC_5 PF14787.1 gi|148643691|ref|YP_001274204.1| - 0.7 9.4 7.6 3.2 7.3 0.4 2.2 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger Cys_rich_KTR PF14205.1 gi|148643691|ref|YP_001274204.1| - 0.75 9.2 4.0 7.5 6.1 2.8 2.0 1 1 0 1 1 1 0 Cysteine-rich KTR Rubredoxin PF00301.15 gi|148643691|ref|YP_001274204.1| - 0.81 9.6 6.2 30 4.6 4.4 2.2 1 1 1 2 2 2 0 Rubredoxin YhfH PF14149.1 gi|148643691|ref|YP_001274204.1| - 0.85 9.4 4.0 2 8.2 2.3 2.0 2 1 0 2 2 2 0 YhfH-like protein zf-LITAF-like PF10601.4 gi|148643691|ref|YP_001274204.1| - 0.86 9.5 3.3 6.9 6.6 0.1 2.1 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain DUF1610 PF07754.6 gi|148643691|ref|YP_001274204.1| - 0.96 9.6 7.6 1 9.5 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF2296 PF10058.4 gi|148643691|ref|YP_001274204.1| - 2.3 8.0 5.8 8.1 6.2 0.3 2.1 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RING_4 PF14570.1 gi|148643691|ref|YP_001274204.1| - 6.8 6.3 9.1 67 3.1 6.2 2.0 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain Brix PF04427.13 gi|148643692|ref|YP_001274205.1| - 1.4e-10 41.2 0.8 1.5e-10 41.0 0.6 1.3 1 1 0 1 1 1 1 Brix domain TPR_17 PF13431.1 gi|148643692|ref|YP_001274205.1| - 0.12 12.6 0.0 4.1 7.8 0.0 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat Pcc1 PF09341.5 gi|148643693|ref|YP_001274206.1| - 1.4e-18 66.6 0.2 1.6e-18 66.4 0.1 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 MogR_DNAbind PF12181.3 gi|148643693|ref|YP_001274206.1| - 0.034 13.9 0.1 0.048 13.4 0.1 1.2 1 1 0 1 1 1 0 DNA binding domain of the motility gene repressor (MogR) Prefoldin_2 PF01920.15 gi|148643694|ref|YP_001274207.1| - 1.1e-22 79.7 22.5 1.3e-22 79.6 15.6 1.0 1 0 0 1 1 1 1 Prefoldin subunit Lipoprotein_7 PF01540.11 gi|148643694|ref|YP_001274207.1| - 0.0082 15.2 2.7 0.0098 14.9 1.7 1.3 1 1 0 1 1 1 1 Adhesin lipoprotein DUF3584 PF12128.3 gi|148643694|ref|YP_001274207.1| - 0.014 12.7 13.1 0.017 12.4 9.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF2802 PF10975.3 gi|148643694|ref|YP_001274207.1| - 0.029 14.1 0.9 0.029 14.1 0.6 3.7 2 2 1 3 3 3 0 Protein of unknown function (DUF2802) Lebercilin PF15619.1 gi|148643694|ref|YP_001274207.1| - 0.16 11.3 16.2 0.47 9.8 11.3 1.6 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Laminin_II PF06009.7 gi|148643694|ref|YP_001274207.1| - 0.21 11.3 13.5 0.34 10.6 9.3 1.4 1 1 0 1 1 1 0 Laminin Domain II CENP-Q PF13094.1 gi|148643694|ref|YP_001274207.1| - 0.22 11.5 17.1 1.3 9.0 3.3 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Cortex-I_coil PF09304.5 gi|148643694|ref|YP_001274207.1| - 0.23 11.4 16.1 0.27 11.3 2.7 2.1 1 1 0 2 2 2 0 Cortexillin I, coiled coil MFS_3 PF05977.8 gi|148643694|ref|YP_001274207.1| - 0.24 9.4 1.8 0.26 9.3 1.2 1.1 1 0 0 1 1 1 0 Transmembrane secretion effector DUF241 PF03087.9 gi|148643694|ref|YP_001274207.1| - 0.31 10.4 11.3 1.6 8.2 0.8 2.0 1 1 1 2 2 2 0 Arabidopsis protein of unknown function DUF3373 PF11853.3 gi|148643694|ref|YP_001274207.1| - 0.46 8.9 9.4 0.56 8.6 6.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) DUF87 PF01935.12 gi|148643694|ref|YP_001274207.1| - 0.56 9.9 5.2 0.76 9.5 3.6 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF87 Tropomyosin_1 PF12718.2 gi|148643694|ref|YP_001274207.1| - 0.57 10.0 18.3 1.1 9.1 12.7 1.4 1 1 0 1 1 1 0 Tropomyosin like CENP-F_leu_zip PF10473.4 gi|148643694|ref|YP_001274207.1| - 0.64 9.8 20.6 1.6 8.6 14.3 1.5 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF848 PF05852.6 gi|148643694|ref|YP_001274207.1| - 0.76 9.6 13.6 15 5.3 9.6 2.0 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) TBPIP PF07106.8 gi|148643694|ref|YP_001274207.1| - 0.86 9.1 17.4 2.7 7.5 12.1 1.7 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) COG2 PF06148.6 gi|148643694|ref|YP_001274207.1| - 1 9.2 13.2 1.5 8.6 3.1 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Spc7 PF08317.6 gi|148643694|ref|YP_001274207.1| - 1.1 7.8 18.2 0.058 12.0 4.9 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein Rotamase PF00639.16 gi|148643694|ref|YP_001274207.1| - 1.3 9.8 6.4 0.8 10.4 2.4 1.8 1 1 1 2 2 2 0 PPIC-type PPIASE domain Viral_P18 PF04521.8 gi|148643694|ref|YP_001274207.1| - 1.4 8.4 11.0 1.4 8.3 1.5 2.3 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Nup54 PF13874.1 gi|148643694|ref|YP_001274207.1| - 1.5 8.4 16.7 3.3 7.3 11.6 1.6 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 LUC7 PF03194.10 gi|148643694|ref|YP_001274207.1| - 1.7 8.1 13.2 2.2 7.7 9.1 1.1 1 0 0 1 1 1 0 LUC7 N_terminus Snapin_Pallidin PF14712.1 gi|148643694|ref|YP_001274207.1| - 1.7 9.0 17.2 0.62 10.4 8.4 2.0 1 1 1 2 2 2 0 Snapin/Pallidin IncA PF04156.9 gi|148643694|ref|YP_001274207.1| - 1.9 8.0 17.3 2.2 7.8 12.0 1.1 1 0 0 1 1 1 0 IncA protein Sec34 PF04136.10 gi|148643694|ref|YP_001274207.1| - 2 8.0 9.1 4.3 7.0 6.3 1.6 1 1 0 1 1 1 0 Sec34-like family Prefoldin PF02996.12 gi|148643694|ref|YP_001274207.1| - 2.1 8.0 20.2 2.2 7.9 3.9 2.8 1 1 2 3 3 3 0 Prefoldin subunit ArsA_ATPase PF02374.10 gi|148643694|ref|YP_001274207.1| - 2.1 7.2 9.3 35 3.3 6.4 2.0 1 1 0 1 1 1 0 Anion-transporting ATPase Flagellin_N PF00669.15 gi|148643694|ref|YP_001274207.1| - 2.6 7.8 15.4 1.2 8.9 3.6 2.1 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region UBN2_2 PF14227.1 gi|148643694|ref|YP_001274207.1| - 2.9 7.4 9.3 22 4.6 6.4 2.0 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type UPF0231 PF06062.6 gi|148643694|ref|YP_001274207.1| - 3.3 7.5 8.1 1.1 9.1 3.3 1.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0231) Occludin_ELL PF07303.8 gi|148643694|ref|YP_001274207.1| - 4.1 8.2 11.7 3.1 8.5 4.7 2.1 1 1 1 2 2 2 0 Occludin homology domain Rogdi_lz PF10259.4 gi|148643694|ref|YP_001274207.1| - 4.1 6.4 10.9 12 4.8 7.6 1.7 1 1 0 1 1 1 0 Rogdi leucine zipper containing protein Mnd1 PF03962.10 gi|148643694|ref|YP_001274207.1| - 4.8 6.8 16.6 19 4.8 11.4 1.8 1 1 0 1 1 1 0 Mnd1 family Hormone_1 PF00103.15 gi|148643694|ref|YP_001274207.1| - 5.5 6.2 7.3 12 5.1 0.5 2.0 1 1 1 2 2 2 0 Somatotropin hormone family V_ATPase_I PF01496.14 gi|148643694|ref|YP_001274207.1| - 5.7 4.6 10.9 7.2 4.3 7.5 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DASH_Spc34 PF08657.5 gi|148643694|ref|YP_001274207.1| - 6.2 6.4 13.9 9 5.8 9.6 1.3 1 1 0 1 1 1 0 DASH complex subunit Spc34 Fib_alpha PF08702.5 gi|148643694|ref|YP_001274207.1| - 6.3 6.9 16.6 5.2 7.1 4.0 2.2 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|148643694|ref|YP_001274207.1| - 9.3 6.0 12.6 20 5.0 4.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF342 PF03961.8 gi|148643694|ref|YP_001274207.1| - 9.8 4.4 11.8 12 4.1 8.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF3194 PF11419.3 gi|148643695|ref|YP_001274208.1| - 1.4e-06 28.4 4.9 1.7e-06 28.1 3.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Nup35_RRM_2 PF14605.1 gi|148643695|ref|YP_001274208.1| - 0.1 12.3 0.0 6.5 6.6 0.0 2.2 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif His_biosynth PF00977.16 gi|148643696|ref|YP_001274209.1| - 3.7e-38 131.0 0.2 4.6e-38 130.7 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein QRPTase_C PF01729.14 gi|148643696|ref|YP_001274209.1| - 0.00028 20.4 0.2 0.00048 19.7 0.2 1.4 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain PRAI PF00697.17 gi|148643696|ref|YP_001274209.1| - 0.00046 19.8 0.1 0.00074 19.1 0.0 1.3 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Bac_chlorC PF02043.12 gi|148643697|ref|YP_001274210.1| - 0.12 12.2 0.1 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 Bacteriochlorophyll C binding protein Sigma_reg_N PF13800.1 gi|148643697|ref|YP_001274210.1| - 0.3 11.1 1.3 0.39 10.7 0.9 1.2 1 0 0 1 1 1 0 Sigma factor regulator N-terminal DUF2929 PF11151.3 gi|148643698|ref|YP_001274211.1| - 0.022 14.8 3.5 0.12 12.5 0.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2929) FAM70 PF14967.1 gi|148643698|ref|YP_001274211.1| - 0.2 10.8 2.8 0.21 10.7 1.9 1.0 1 0 0 1 1 1 0 FAM70 protein DUF4064 PF13273.1 gi|148643698|ref|YP_001274211.1| - 0.24 11.5 4.6 0.29 11.2 3.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) YqzM PF14141.1 gi|148643698|ref|YP_001274211.1| - 0.27 11.0 5.3 0.82 9.4 0.4 2.2 2 0 0 2 2 2 0 YqzM-like protein Claudin_2 PF13903.1 gi|148643698|ref|YP_001274211.1| - 0.32 10.6 2.8 0.33 10.6 1.9 1.0 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF3955 PF13127.1 gi|148643698|ref|YP_001274211.1| - 0.37 10.3 6.0 0.86 9.1 4.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3955) SdpI PF13630.1 gi|148643698|ref|YP_001274211.1| - 0.61 9.8 4.9 0.87 9.3 3.4 1.4 1 1 0 1 1 1 0 SdpI/YhfL protein family DUF3068 PF11271.3 gi|148643698|ref|YP_001274211.1| - 0.78 8.7 6.4 0.78 8.7 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3068) DUF4282 PF14110.1 gi|148643698|ref|YP_001274211.1| - 1.9 8.7 6.3 2 8.6 4.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) Cation_efflux PF01545.16 gi|148643699|ref|YP_001274212.1| - 8.5e-57 192.3 15.9 9.8e-57 192.1 11.0 1.0 1 0 0 1 1 1 1 Cation efflux family DUF4234 PF14018.1 gi|148643699|ref|YP_001274212.1| - 0.019 14.6 5.8 1.6 8.5 1.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4234) Cytochrome-c551 PF10643.4 gi|148643699|ref|YP_001274212.1| - 3.1 7.0 8.1 5.7 6.1 5.6 1.4 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 Phage_integrase PF00589.17 gi|148643700|ref|YP_001274213.1| - 1.4e-09 37.8 0.2 3.1e-09 36.7 0.1 1.6 1 0 0 1 1 1 1 Phage integrase family Spore-coat_CotD PF11122.3 gi|148643700|ref|YP_001274213.1| - 0.0022 18.2 2.6 0.013 15.7 0.1 2.4 2 0 0 2 2 2 1 Inner spore coat protein D HEPN PF05168.9 gi|148643703|ref|YP_001274216.1| - 0.025 14.4 0.9 0.056 13.3 0.5 1.9 1 1 0 1 1 1 0 HEPN domain Mob_Pre PF01076.14 gi|148643704|ref|YP_001274217.1| - 0.02 14.5 1.0 0.02 14.5 0.7 1.2 1 0 0 1 1 1 0 Plasmid recombination enzyme YtfJ_HI0045 PF09695.5 gi|148643704|ref|YP_001274217.1| - 0.089 12.1 0.7 0.56 9.5 0.0 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (YtfJ_HI0045) Virulence_RhuM PF13310.1 gi|148643705|ref|YP_001274218.1| - 5.8e-11 41.8 0.1 1.2e-10 40.9 0.0 1.5 1 1 1 2 2 2 1 Virulence protein RhuM family DUF3047 PF11249.3 gi|148643705|ref|YP_001274218.1| - 0.061 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3047) Arch_ATPase PF01637.13 gi|148643706|ref|YP_001274219.1| - 4.8e-09 36.2 0.8 4.8e-09 36.2 0.5 1.7 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|148643706|ref|YP_001274219.1| - 3.1e-07 30.5 0.0 5.7e-07 29.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|148643706|ref|YP_001274219.1| - 6.4e-05 23.0 0.0 0.00016 21.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain KAP_NTPase PF07693.9 gi|148643706|ref|YP_001274219.1| - 0.00027 20.0 0.2 0.00084 18.4 0.1 1.8 1 1 0 1 1 1 1 KAP family P-loop domain Miro PF08477.8 gi|148643706|ref|YP_001274219.1| - 0.0087 16.5 0.1 0.054 13.9 0.0 2.3 2 0 0 2 2 2 1 Miro-like protein DUF815 PF05673.8 gi|148643706|ref|YP_001274219.1| - 0.0094 14.9 0.0 0.019 13.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|148643706|ref|YP_001274219.1| - 0.018 13.9 0.1 0.036 12.9 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.10 gi|148643706|ref|YP_001274219.1| - 0.028 14.1 0.0 0.082 12.6 0.0 1.8 2 0 0 2 2 2 0 NTPase DUF258 PF03193.11 gi|148643706|ref|YP_001274219.1| - 0.039 13.1 0.0 0.083 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_35 PF14516.1 gi|148643706|ref|YP_001274219.1| - 0.039 12.5 0.2 2.4 6.7 0.0 2.4 1 1 1 2 2 2 0 AAA-like domain DUF2791 PF10923.3 gi|148643706|ref|YP_001274219.1| - 0.04 12.5 0.0 0.077 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) NACHT PF05729.7 gi|148643706|ref|YP_001274219.1| - 0.085 12.5 0.0 3.1 7.4 0.0 2.6 2 1 0 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|148643706|ref|YP_001274219.1| - 0.2 11.9 1.9 0.59 10.4 0.2 2.3 2 0 0 2 2 2 0 AAA domain Phage_CI_repr PF07022.8 gi|148643707|ref|YP_001274220.1| - 0.097 12.7 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Arg_repressor PF01316.16 gi|148643709|ref|YP_001274222.1| - 0.1 12.1 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain OppC_N PF12911.2 gi|148643711|ref|YP_001274224.1| - 0.23 10.8 1.4 0.39 10.1 1.0 1.4 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DUF2841 PF11001.3 gi|148643713|ref|YP_001274226.1| - 0.11 12.4 0.3 0.26 11.1 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2841) SGS PF05002.10 gi|148643713|ref|YP_001274226.1| - 0.33 10.7 2.0 4.6 7.0 0.0 2.2 1 1 1 2 2 2 0 SGS domain ERF PF04404.7 gi|148643714|ref|YP_001274227.1| - 1.8e-29 102.3 0.1 2.5e-29 101.8 0.1 1.2 1 0 0 1 1 1 1 ERF superfamily SWIM PF04434.12 gi|148643715|ref|YP_001274228.1| - 0.0013 18.1 0.2 0.0016 17.8 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger SRI PF08236.6 gi|148643716|ref|YP_001274229.1| - 0.00086 19.2 0.4 0.0011 18.8 0.3 1.1 1 0 0 1 1 1 1 SRI (Set2 Rpb1 interacting) domain tRNA_lig_kinase PF08303.6 gi|148643716|ref|YP_001274229.1| - 0.056 13.3 0.2 0.066 13.0 0.1 1.1 1 0 0 1 1 1 0 tRNA ligase kinase domain Uds1 PF15456.1 gi|148643717|ref|YP_001274230.1| - 0.0088 16.0 2.1 0.088 12.7 1.6 2.0 2 0 0 2 2 2 1 Up-regulated During Septation PhoU PF01895.14 gi|148643717|ref|YP_001274230.1| - 0.016 15.6 1.3 0.025 15.0 0.9 1.3 1 0 0 1 1 1 0 PhoU domain TBPIP PF07106.8 gi|148643717|ref|YP_001274230.1| - 0.017 14.6 2.4 0.025 14.1 1.6 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3166 PF11365.3 gi|148643717|ref|YP_001274230.1| - 0.02 15.3 0.6 0.03 14.7 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3166) CCDC-167 PF15188.1 gi|148643717|ref|YP_001274230.1| - 0.023 14.6 4.4 0.037 13.9 3.1 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 MAGSP PF03082.9 gi|148643717|ref|YP_001274230.1| - 0.037 13.4 0.2 0.039 13.3 0.1 1.1 1 0 0 1 1 1 0 Male accessory gland secretory protein CcdA PF07362.7 gi|148643717|ref|YP_001274230.1| - 0.094 12.6 2.2 1.9 8.3 1.5 2.7 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA RRF PF01765.14 gi|148643717|ref|YP_001274230.1| - 0.11 12.0 1.9 0.093 12.1 0.6 1.5 2 0 0 2 2 2 0 Ribosome recycling factor IncA PF04156.9 gi|148643717|ref|YP_001274230.1| - 0.12 11.9 2.0 0.16 11.5 1.4 1.2 1 0 0 1 1 1 0 IncA protein TPD52 PF04201.10 gi|148643717|ref|YP_001274230.1| - 0.67 9.6 3.3 1.1 8.9 2.3 1.4 1 1 0 1 1 1 0 Tumour protein D52 family Atg14 PF10186.4 gi|148643717|ref|YP_001274230.1| - 0.67 8.8 4.7 1.3 7.9 2.8 1.7 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF3007 PF11460.3 gi|148643718|ref|YP_001274231.1| - 0.031 14.3 0.1 0.044 13.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) DUF2226 PF09987.4 gi|148643718|ref|YP_001274231.1| - 0.04 13.0 0.0 0.04 13.0 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2226) Nuc_N PF14448.1 gi|148643718|ref|YP_001274231.1| - 0.095 12.2 0.0 0.23 11.0 0.0 1.7 1 1 1 2 2 2 0 Nuclease N terminal BAF PF02961.9 gi|148643720|ref|YP_001274233.1| - 0.0038 17.4 0.1 0.0045 17.2 0.1 1.0 1 0 0 1 1 1 1 Barrier to autointegration factor YqzL PF14006.1 gi|148643720|ref|YP_001274233.1| - 0.099 12.8 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 YqzL-like protein HTH_24 PF13412.1 gi|148643720|ref|YP_001274233.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ASCH PF04266.9 gi|148643721|ref|YP_001274234.1| - 1.3e-05 25.4 0.0 1.5e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 ASCH domain DUF3850 PF12961.2 gi|148643721|ref|YP_001274234.1| - 2.9e-05 23.9 0.1 4.2e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3850) ACCA PF03255.9 gi|148643723|ref|YP_001274236.1| - 0.12 11.9 0.0 0.14 11.6 0.0 1.0 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF267 PF03268.9 gi|148643724|ref|YP_001274237.1| - 0.0016 17.3 1.1 0.0018 17.2 0.8 1.0 1 0 0 1 1 1 1 Caenorhabditis protein of unknown function, DUF267 Dsl1_C PF11989.3 gi|148643724|ref|YP_001274237.1| - 0.067 12.3 0.7 0.066 12.3 0.5 1.0 1 0 0 1 1 1 0 Retrograde transport protein Dsl1 C terminal NinG PF05766.7 gi|148643725|ref|YP_001274238.1| - 0.0013 18.5 1.4 0.0017 18.1 1.0 1.1 1 0 0 1 1 1 1 Bacteriophage Lambda NinG protein zf-MYND PF01753.13 gi|148643725|ref|YP_001274238.1| - 0.1 12.4 1.5 0.18 11.6 1.0 1.4 1 0 0 1 1 1 0 MYND finger Fer4_9 PF13187.1 gi|148643725|ref|YP_001274238.1| - 0.49 10.6 4.1 4.2 7.7 3.0 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-CHCC PF10276.4 gi|148643725|ref|YP_001274238.1| - 0.72 9.7 4.4 0.36 10.7 1.3 1.8 1 1 1 2 2 2 0 Zinc-finger domain TF_Zn_Ribbon PF08271.7 gi|148643727|ref|YP_001274240.1| - 5.6e-05 22.3 3.1 0.00026 20.2 0.4 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding Elf1 PF05129.8 gi|148643727|ref|YP_001274240.1| - 0.014 15.1 4.2 0.66 9.7 0.7 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like A2L_zn_ribbon PF08792.5 gi|148643727|ref|YP_001274240.1| - 0.021 14.2 3.0 0.026 13.9 0.3 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|148643727|ref|YP_001274240.1| - 0.038 13.9 2.7 6.1 6.8 0.6 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Smg4_UPF3 PF03467.10 gi|148643727|ref|YP_001274240.1| - 0.073 13.0 0.1 0.075 13.0 0.0 1.1 1 0 0 1 1 1 0 Smg-4/UPF3 family zinc_ribbon_5 PF13719.1 gi|148643727|ref|YP_001274240.1| - 0.14 11.7 3.1 7.4 6.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|148643727|ref|YP_001274240.1| - 0.15 11.7 3.8 6.4 6.5 0.6 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Cytochrom_CIII PF02085.11 gi|148643727|ref|YP_001274240.1| - 0.37 10.8 6.6 0.43 10.7 4.5 1.2 1 0 0 1 1 1 0 Class III cytochrome C family zf-C2H2 PF00096.21 gi|148643727|ref|YP_001274240.1| - 0.86 10.0 10.3 2.2 8.8 0.4 2.8 2 0 0 2 2 2 0 Zinc finger, C2H2 type DZR PF12773.2 gi|148643727|ref|YP_001274240.1| - 0.9 9.4 8.2 6.4 6.6 5.7 2.0 1 1 0 1 1 1 0 Double zinc ribbon C1_4 PF07975.7 gi|148643727|ref|YP_001274240.1| - 0.94 9.5 7.0 8.5 6.4 4.3 2.3 1 1 1 2 2 2 0 TFIIH C1-like domain zf-H2C2_5 PF13909.1 gi|148643727|ref|YP_001274240.1| - 1.3 9.3 5.9 0.27 11.5 0.7 2.2 2 0 0 2 2 2 0 C2H2-type zinc-finger domain RNHCP PF12647.2 gi|148643727|ref|YP_001274240.1| - 1.4 8.8 9.1 0.5 10.2 0.5 2.1 2 0 0 2 2 2 0 RNHCP domain Fer4_9 PF13187.1 gi|148643727|ref|YP_001274240.1| - 1.8 8.9 7.9 3 8.2 5.5 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Rubredoxin PF00301.15 gi|148643727|ref|YP_001274240.1| - 2.9 7.8 8.7 2.1 8.2 0.9 2.3 2 0 0 2 2 2 0 Rubredoxin zf-Mss51 PF13824.1 gi|148643727|ref|YP_001274240.1| - 3.1 7.7 9.7 11 5.9 1.9 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 BIR PF00653.16 gi|148643727|ref|YP_001274240.1| - 4.9 7.6 9.6 0.37 11.2 2.0 2.0 2 0 0 2 2 2 0 Inhibitor of Apoptosis domain Colicin PF01024.14 gi|148643728|ref|YP_001274241.1| - 0.023 14.2 1.2 0.028 14.0 0.8 1.2 1 0 0 1 1 1 0 Colicin pore forming domain DUF3735 PF12537.3 gi|148643728|ref|YP_001274241.1| - 0.54 10.3 4.6 0.59 10.2 2.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3735) DUF1358 PF07096.6 gi|148643729|ref|YP_001274242.1| - 0.0014 18.2 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1358) RE_TaqI PF09573.5 gi|148643729|ref|YP_001274242.1| - 0.0029 16.7 0.3 0.0036 16.4 0.2 1.1 1 0 0 1 1 1 1 TaqI restriction endonuclease DUF2207 PF09972.4 gi|148643729|ref|YP_001274242.1| - 0.031 12.8 0.8 0.032 12.8 0.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Fibritin_C PF07921.7 gi|148643729|ref|YP_001274242.1| - 0.053 13.4 0.4 0.11 12.4 0.3 1.5 1 1 0 1 1 1 0 Fibritin C-terminal region M60-like PF13402.1 gi|148643729|ref|YP_001274242.1| - 0.076 11.9 0.0 0.085 11.7 0.0 1.1 1 0 0 1 1 1 0 Peptidase M60-like family KLRAQ PF10205.4 gi|148643729|ref|YP_001274242.1| - 0.087 12.8 3.2 0.11 12.5 2.3 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein Nsp1_C PF05064.8 gi|148643729|ref|YP_001274242.1| - 0.27 10.8 4.7 0.36 10.4 2.7 1.4 1 1 0 1 1 1 0 Nsp1-like C-terminal region CR6_interact PF10147.4 gi|148643729|ref|YP_001274242.1| - 0.42 9.9 5.3 0.48 9.7 3.7 1.0 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 DUF16 PF01519.11 gi|148643729|ref|YP_001274242.1| - 0.6 10.3 5.6 0.79 9.9 3.9 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF16 Peptidase_S49_N PF08496.5 gi|148643729|ref|YP_001274242.1| - 0.65 9.7 7.8 0.7 9.6 5.1 1.3 1 1 0 1 1 1 0 Peptidase family S49 N-terminal HemX PF04375.9 gi|148643729|ref|YP_001274242.1| - 2 6.9 6.0 2.5 6.6 4.1 1.0 1 0 0 1 1 1 0 HemX SlyX PF04102.7 gi|148643729|ref|YP_001274242.1| - 2.9 8.3 6.4 5.9 7.3 4.4 1.6 1 1 0 1 1 1 0 SlyX Terminase_6 PF03237.10 gi|148643731|ref|YP_001274244.1| - 7e-27 94.1 3.3 1e-26 93.6 2.3 1.2 1 0 0 1 1 1 1 Terminase-like family Phage_portal PF04860.7 gi|148643732|ref|YP_001274245.1| - 4.1e-20 71.7 0.2 5.7e-20 71.2 0.1 1.2 1 0 0 1 1 1 1 Phage portal protein ADPrib_exo_Tox PF03496.9 gi|148643733|ref|YP_001274246.1| - 1.3e-14 53.8 5.7 1.3e-14 53.8 3.9 3.0 3 1 0 3 3 3 1 ADP-ribosyltransferase exoenzyme DUF1336 PF07059.7 gi|148643733|ref|YP_001274246.1| - 8.6 5.7 13.3 2.3 7.6 1.4 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1336) Peptidase_U35_2 PF14550.1 gi|148643735|ref|YP_001274248.1| - 1.5e-25 89.2 0.0 1.7e-25 89.0 0.0 1.0 1 0 0 1 1 1 1 Putative phage protease XkdF Aminotran_MocR PF12897.2 gi|148643735|ref|YP_001274248.1| - 0.048 12.2 0.0 0.22 10.0 0.0 1.8 2 0 0 2 2 2 0 Alanine-glyoxylate amino-transferase DUF1456 PF07308.8 gi|148643736|ref|YP_001274249.1| - 0.036 14.0 0.0 0.077 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1456) Phage_capsid PF05065.8 gi|148643737|ref|YP_001274250.1| - 8.9e-08 31.6 2.3 1.1e-07 31.3 1.6 1.1 1 0 0 1 1 1 1 Phage capsid family Pex26 PF07163.7 gi|148643738|ref|YP_001274251.1| - 0.00085 18.3 0.0 0.0011 18.0 0.0 1.1 1 0 0 1 1 1 1 Pex26 protein Phage_connect_1 PF05135.8 gi|148643738|ref|YP_001274251.1| - 0.0036 17.4 6.8 0.0096 16.0 4.0 2.2 1 1 1 2 2 2 1 Phage gp6-like head-tail connector protein SRP1_TIP1 PF00660.12 gi|148643738|ref|YP_001274251.1| - 0.078 12.8 0.2 0.15 11.8 0.1 1.5 2 0 0 2 2 2 0 Seripauperin and TIP1 family FBA_3 PF08268.7 gi|148643742|ref|YP_001274255.1| - 0.11 12.2 0.1 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 F-box associated domain DUF1403 PF07183.6 gi|148643743|ref|YP_001274256.1| - 0.094 12.0 0.0 0.094 12.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1403) Peptidase_C71 PF12386.3 gi|148643744|ref|YP_001274257.1| - 0.0015 17.9 0.0 0.0068 15.8 0.0 2.2 1 0 0 1 1 1 1 Pseudomurein endo-isopeptidase Pei Vfa1 PF08432.5 gi|148643744|ref|YP_001274257.1| - 0.41 10.6 4.3 1 9.3 3.0 1.6 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 DUF1993 PF09351.5 gi|148643744|ref|YP_001274257.1| - 1.2 9.0 6.7 0.78 9.6 2.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1993) Nup54 PF13874.1 gi|148643744|ref|YP_001274257.1| - 1.5 8.5 10.1 2.5 7.7 5.2 2.6 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Wzt_C PF14524.1 gi|148643745|ref|YP_001274258.1| - 0.021 14.4 0.2 0.057 13.1 0.1 1.8 1 1 0 1 1 1 0 Wzt C-terminal domain Sipho_tail PF05709.6 gi|148643746|ref|YP_001274259.1| - 0.00061 19.0 3.0 0.00061 19.0 2.1 2.9 2 2 0 2 2 2 1 Phage tail protein IL3 PF02059.10 gi|148643746|ref|YP_001274259.1| - 0.053 13.5 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 Interleukin-3 PTR PF12789.2 gi|148643748|ref|YP_001274261.1| - 9e-07 28.6 23.3 3.1e-06 26.9 1.1 4.2 4 1 0 4 4 4 3 Phage tail repeat like Collagen PF01391.13 gi|148643749|ref|YP_001274262.1| - 8.7e-06 25.1 15.2 8.7e-06 25.1 10.5 1.8 2 0 0 2 2 2 1 Collagen triple helix repeat (20 copies) Toxin_22 PF08092.6 gi|148643750|ref|YP_001274263.1| - 0.38 10.6 4.1 0.66 9.8 2.8 1.5 1 0 0 1 1 1 0 Magi peptide toxin family Peptidase_C71 PF12386.3 gi|148643751|ref|YP_001274264.1| - 3e-59 198.5 1.7 3e-59 198.5 1.2 2.1 2 1 1 3 3 3 1 Pseudomurein endo-isopeptidase Pei RRM_1 PF00076.17 gi|148643751|ref|YP_001274264.1| - 0.052 13.1 0.0 0.16 11.6 0.0 1.9 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Toxin_17 PF08086.6 gi|148643751|ref|YP_001274264.1| - 0.083 12.9 0.9 0.083 12.9 0.6 2.1 2 0 0 2 2 2 0 Ergtoxin family Phage_tail_U PF06141.6 gi|148643751|ref|YP_001274264.1| - 0.084 12.8 0.0 0.24 11.3 0.0 1.8 1 0 0 1 1 1 0 Phage minor tail protein U Epsilon_antitox PF08998.6 gi|148643752|ref|YP_001274265.1| - 0.092 12.7 0.5 0.16 11.9 0.1 1.6 2 0 0 2 2 2 0 Bacterial epsilon antitoxin PfkB PF00294.19 gi|148643753|ref|YP_001274266.1| - 5.1e-10 38.9 0.0 7e-10 38.5 0.0 1.3 1 1 0 1 1 1 1 pfkB family carbohydrate kinase DUF3298 PF11738.3 gi|148643753|ref|YP_001274266.1| - 4 8.0 5.9 0.77 10.3 0.6 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3298) DUF4011 PF13195.1 gi|148643754|ref|YP_001274267.1| - 1.7e-45 155.1 1.8 1.7e-45 155.1 1.3 6.7 5 1 1 6 6 4 1 Protein of unknown function (DUF4011) AAA_11 PF13086.1 gi|148643754|ref|YP_001274267.1| - 5.8e-16 58.7 0.1 8.3e-09 35.3 0.0 6.1 5 2 0 5 5 3 2 AAA domain AAA_12 PF13087.1 gi|148643754|ref|YP_001274267.1| - 8.9e-15 54.5 1.1 6.2e-14 51.8 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|148643754|ref|YP_001274267.1| - 1.7e-13 50.1 0.1 3.5e-13 49.0 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain DUF3320 PF11784.3 gi|148643754|ref|YP_001274267.1| - 3.4e-13 48.8 0.0 7.5e-13 47.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3320) AAA_30 PF13604.1 gi|148643754|ref|YP_001274267.1| - 3e-05 23.6 7.2 0.00022 20.8 0.1 2.8 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.12 gi|148643754|ref|YP_001274267.1| - 0.00014 21.3 0.0 0.00055 19.4 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein T2SE PF00437.15 gi|148643754|ref|YP_001274267.1| - 0.0078 15.1 0.0 0.079 11.8 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein Viral_helicase1 PF01443.13 gi|148643754|ref|YP_001274267.1| - 0.0085 15.6 3.7 2.5 7.5 0.0 3.3 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase ArgK PF03308.11 gi|148643754|ref|YP_001274267.1| - 0.028 13.2 0.0 0.095 11.4 0.0 1.9 1 0 0 1 1 1 0 ArgK protein FtsK_SpoIIIE PF01580.13 gi|148643754|ref|YP_001274267.1| - 0.029 13.8 0.1 0.12 11.7 0.0 2.1 1 1 0 1 1 1 0 FtsK/SpoIIIE family Bcl-2_3 PF15286.1 gi|148643754|ref|YP_001274267.1| - 0.032 14.6 0.0 0.13 12.7 0.0 2.1 1 0 0 1 1 1 0 Apoptosis regulator M11, B cell 2 leukaemia/lymphoma like AAA_33 PF13671.1 gi|148643754|ref|YP_001274267.1| - 0.034 14.0 0.0 0.11 12.3 0.0 1.9 1 0 0 1 1 1 0 AAA domain Helicase_RecD PF05127.9 gi|148643754|ref|YP_001274267.1| - 0.036 13.6 0.9 1.8 8.1 0.0 3.2 3 0 0 3 3 3 0 Helicase AAA_16 PF13191.1 gi|148643754|ref|YP_001274267.1| - 0.37 10.7 0.0 0.37 10.7 0.0 3.4 4 0 0 4 4 4 0 AAA ATPase domain UvrC_HhH_N PF08459.6 gi|148643755|ref|YP_001274268.1| - 9.2e-52 174.6 0.1 3.2e-51 172.9 0.0 2.0 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.19 gi|148643755|ref|YP_001274268.1| - 4.9e-13 49.2 0.5 4.9e-13 49.2 0.3 3.3 4 0 0 4 4 4 1 GIY-YIG catalytic domain UVR PF02151.14 gi|148643755|ref|YP_001274268.1| - 1.9e-11 43.0 2.4 4.5e-11 41.8 1.6 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif HHH_2 PF12826.2 gi|148643755|ref|YP_001274268.1| - 2.6e-10 40.0 0.5 7.9e-09 35.2 0.0 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|148643755|ref|YP_001274268.1| - 5.3e-09 36.1 0.6 2.2e-08 34.1 0.0 2.3 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.18 gi|148643755|ref|YP_001274268.1| - 3.9e-06 26.2 0.0 0.022 14.4 0.0 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|148643755|ref|YP_001274268.1| - 0.004 17.0 0.5 0.13 12.1 0.0 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|148643755|ref|YP_001274268.1| - 0.015 15.5 0.1 0.015 15.5 0.1 3.2 4 0 0 4 4 4 0 5'-3' exonuclease, C-terminal SAM fold Ribosomal_S13 PF00416.17 gi|148643755|ref|YP_001274268.1| - 0.076 13.4 2.9 0.93 9.9 0.1 3.5 3 2 0 3 3 3 0 Ribosomal protein S13/S18 zinc_ribbon_2 PF13240.1 gi|148643756|ref|YP_001274269.1| - 9.8e-05 21.7 3.9 0.00021 20.6 2.7 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148643756|ref|YP_001274269.1| - 0.0001 21.3 1.7 0.00017 20.6 1.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148643756|ref|YP_001274269.1| - 0.0014 18.3 1.2 0.0024 17.6 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ZPR1 PF03367.8 gi|148643756|ref|YP_001274269.1| - 0.087 11.9 1.6 0.5 9.5 0.4 2.1 1 1 1 2 2 2 0 ZPR1 zinc-finger domain zf-tcix PF14952.1 gi|148643756|ref|YP_001274269.1| - 0.1 11.9 2.8 0.2 11.0 1.9 1.5 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Mu-like_Com PF10122.4 gi|148643756|ref|YP_001274269.1| - 0.15 11.1 0.3 0.3 10.1 0.2 1.5 1 0 0 1 1 1 0 Mu-like prophage protein Com SKG6 PF08693.5 gi|148643756|ref|YP_001274269.1| - 0.2 10.9 1.9 0.39 10.0 1.3 1.4 1 0 0 1 1 1 0 Transmembrane alpha-helix domain zf-RanBP PF00641.13 gi|148643756|ref|YP_001274269.1| - 0.2 10.7 2.1 0.47 9.5 1.5 1.6 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Sec7 PF01369.15 gi|148643757|ref|YP_001274270.1| - 0.0035 17.0 0.2 0.0039 16.8 0.2 1.1 1 0 0 1 1 1 1 Sec7 domain Clathrin PF00637.15 gi|148643757|ref|YP_001274270.1| - 0.0094 15.5 1.7 0.11 12.1 0.4 2.4 2 1 0 2 2 2 1 Region in Clathrin and VPS Maelstrom PF13017.1 gi|148643757|ref|YP_001274270.1| - 0.023 14.2 1.5 0.059 12.8 0.1 1.8 1 1 1 2 2 2 0 piRNA pathway germ-plasm component Fibrillarin_2 PF10113.4 gi|148643757|ref|YP_001274270.1| - 0.077 11.3 0.1 0.09 11.0 0.1 1.1 1 0 0 1 1 1 0 Fibrillarin-like archaeal protein DNA_mis_repair PF01119.14 gi|148643757|ref|YP_001274270.1| - 0.089 12.2 0.1 0.17 11.3 0.1 1.4 1 0 0 1 1 1 0 DNA mismatch repair protein, C-terminal domain APC2 PF08672.6 gi|148643757|ref|YP_001274270.1| - 0.13 12.5 1.0 0.48 10.7 0.2 2.2 2 1 1 3 3 3 0 Anaphase promoting complex (APC) subunit 2 ABC_tran PF00005.22 gi|148643758|ref|YP_001274271.1| - 1.1e-56 190.8 0.0 1.7e-29 102.9 0.0 3.0 3 1 0 3 3 2 2 ABC transporter AAA_21 PF13304.1 gi|148643758|ref|YP_001274271.1| - 2.5e-16 60.5 8.9 5.1e-08 33.2 1.4 4.3 3 2 0 3 3 2 2 AAA domain AAA_15 PF13175.1 gi|148643758|ref|YP_001274271.1| - 6.7e-11 41.8 6.9 0.011 14.7 0.3 4.3 4 0 0 4 4 4 3 AAA ATPase domain AAA_22 PF13401.1 gi|148643758|ref|YP_001274271.1| - 3.4e-10 40.1 3.9 0.0037 17.3 0.0 4.6 3 2 1 4 4 3 2 AAA domain AAA_16 PF13191.1 gi|148643758|ref|YP_001274271.1| - 4e-10 39.9 0.0 0.0002 21.3 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|148643758|ref|YP_001274271.1| - 1.7e-09 37.1 0.1 0.0015 17.7 0.1 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|148643758|ref|YP_001274271.1| - 3.6e-09 36.1 4.1 4.9e-05 22.6 0.0 3.9 3 1 1 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|148643758|ref|YP_001274271.1| - 8.1e-09 36.3 7.4 0.029 15.1 0.0 5.2 4 1 0 4 4 4 2 AAA domain AAA_25 PF13481.1 gi|148643758|ref|YP_001274271.1| - 5.1e-07 29.2 0.1 3.6 6.9 0.0 4.5 4 0 0 4 4 4 0 AAA domain Arch_ATPase PF01637.13 gi|148643758|ref|YP_001274271.1| - 7e-07 29.1 0.9 0.022 14.4 0.2 2.8 2 1 0 2 2 2 2 Archaeal ATPase AAA_29 PF13555.1 gi|148643758|ref|YP_001274271.1| - 3.6e-06 26.4 0.4 0.089 12.3 0.2 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|148643758|ref|YP_001274271.1| - 1.3e-05 24.8 0.3 0.085 12.4 0.0 2.8 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|148643758|ref|YP_001274271.1| - 1.5e-05 24.5 2.7 0.73 9.2 0.0 4.3 3 2 1 5 5 4 2 AAA-like domain cobW PF02492.14 gi|148643758|ref|YP_001274271.1| - 2.3e-05 23.9 0.2 0.07 12.5 0.1 2.9 2 1 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|148643758|ref|YP_001274271.1| - 2.4e-05 23.8 0.0 0.31 10.5 0.0 2.5 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation AAA_14 PF13173.1 gi|148643758|ref|YP_001274271.1| - 3.7e-05 23.6 1.3 0.5 10.2 0.0 3.8 3 1 1 4 4 3 1 AAA domain AAA_33 PF13671.1 gi|148643758|ref|YP_001274271.1| - 5.1e-05 23.1 0.2 0.33 10.8 0.0 3.1 2 1 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|148643758|ref|YP_001274271.1| - 5.6e-05 22.8 0.6 1.6 8.2 0.0 3.6 4 0 0 4 4 3 1 AAA domain MobB PF03205.9 gi|148643758|ref|YP_001274271.1| - 5.9e-05 22.8 0.0 0.53 9.9 0.0 2.8 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|148643758|ref|YP_001274271.1| - 8.2e-05 22.3 0.2 0.26 10.9 0.0 2.6 2 0 0 2 2 2 2 NACHT domain AAA_30 PF13604.1 gi|148643758|ref|YP_001274271.1| - 9.4e-05 22.0 0.1 0.41 10.2 0.1 3.0 2 1 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|148643758|ref|YP_001274271.1| - 0.00011 22.2 0.0 0.14 12.1 0.0 3.0 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.7 gi|148643758|ref|YP_001274271.1| - 0.00012 21.2 0.0 0.75 8.8 0.0 3.2 3 0 0 3 3 3 1 Zeta toxin SbcCD_C PF13558.1 gi|148643758|ref|YP_001274271.1| - 0.00015 21.5 0.1 0.08 12.8 0.0 4.0 3 2 0 3 3 2 1 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|148643758|ref|YP_001274271.1| - 0.00017 21.8 10.0 0.31 11.3 2.0 4.6 3 2 0 3 3 2 2 AAA domain AAA_19 PF13245.1 gi|148643758|ref|YP_001274271.1| - 0.00027 20.6 0.0 0.46 10.2 0.0 3.3 3 0 0 3 3 3 1 Part of AAA domain NB-ARC PF00931.17 gi|148643758|ref|YP_001274271.1| - 0.00032 19.6 0.1 0.17 10.7 0.1 2.6 2 0 0 2 2 2 1 NB-ARC domain AAA PF00004.24 gi|148643758|ref|YP_001274271.1| - 0.00033 20.8 1.4 1.5 9.0 0.0 4.2 4 1 1 5 5 4 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|148643758|ref|YP_001274271.1| - 0.00038 20.8 6.2 0.23 11.7 0.0 3.3 2 1 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|148643758|ref|YP_001274271.1| - 0.00041 20.0 0.1 0.014 15.0 0.0 2.5 2 1 0 2 2 2 1 Adenylylsulphate kinase Miro PF08477.8 gi|148643758|ref|YP_001274271.1| - 0.00084 19.8 0.0 2.5 8.6 0.0 3.1 2 0 0 2 2 2 1 Miro-like protein PhoH PF02562.11 gi|148643758|ref|YP_001274271.1| - 0.0012 18.1 0.0 1.1 8.4 0.0 2.7 2 0 0 2 2 2 1 PhoH-like protein MMR_HSR1 PF01926.18 gi|148643758|ref|YP_001274271.1| - 0.0013 18.6 0.7 0.61 10.0 0.3 3.7 3 1 0 3 3 2 1 50S ribosome-binding GTPase PRK PF00485.13 gi|148643758|ref|YP_001274271.1| - 0.0018 17.8 0.0 0.61 9.6 0.0 2.5 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family IstB_IS21 PF01695.12 gi|148643758|ref|YP_001274271.1| - 0.0022 17.4 0.1 0.17 11.2 0.0 2.9 3 0 0 3 3 3 1 IstB-like ATP binding protein T2SE PF00437.15 gi|148643758|ref|YP_001274271.1| - 0.0026 16.7 0.0 1.9 7.3 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein KaiC PF06745.8 gi|148643758|ref|YP_001274271.1| - 0.0034 16.5 1.4 4.5 6.3 0.1 4.1 4 0 0 4 4 4 0 KaiC AAA_13 PF13166.1 gi|148643758|ref|YP_001274271.1| - 0.004 15.6 0.1 1.3 7.4 0.0 3.1 3 0 0 3 3 3 1 AAA domain Pox_A32 PF04665.7 gi|148643758|ref|YP_001274271.1| - 0.0047 16.2 0.2 4.1 6.6 0.0 2.7 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_5 PF07728.9 gi|148643758|ref|YP_001274271.1| - 0.017 14.8 0.1 4.3 7.0 0.0 3.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Epimerase_2 PF02350.14 gi|148643758|ref|YP_001274271.1| - 0.019 13.7 0.3 4.4 5.9 0.0 2.2 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase RNA_helicase PF00910.17 gi|148643758|ref|YP_001274271.1| - 0.022 14.8 0.1 14 5.9 0.0 3.2 3 0 0 3 3 2 0 RNA helicase SRPRB PF09439.5 gi|148643758|ref|YP_001274271.1| - 0.036 13.2 0.1 6.9 5.8 0.0 2.8 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DnaB_C PF03796.10 gi|148643758|ref|YP_001274271.1| - 0.041 12.7 0.3 5.9 5.6 0.0 2.7 3 0 0 3 3 2 0 DnaB-like helicase C terminal domain ABC_ATPase PF09818.4 gi|148643758|ref|YP_001274271.1| - 0.058 11.9 1.7 12 4.3 0.0 3.5 3 1 0 3 3 3 0 Predicted ATPase of the ABC class ATP-synt_ab PF00006.20 gi|148643758|ref|YP_001274271.1| - 0.069 12.6 0.0 8 5.8 0.0 2.5 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain HD PF01966.17 gi|148643758|ref|YP_001274271.1| - 0.075 13.0 0.1 1.2 9.1 0.0 2.6 2 0 0 2 2 2 0 HD domain FtsK_SpoIIIE PF01580.13 gi|148643758|ref|YP_001274271.1| - 0.082 12.3 0.0 2.1 7.7 0.0 2.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family SRP54 PF00448.17 gi|148643758|ref|YP_001274271.1| - 0.083 12.3 0.2 11 5.3 0.0 3.2 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain APP_N PF02177.11 gi|148643758|ref|YP_001274271.1| - 0.09 12.7 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Amyloid A4 N-terminal heparin-binding TrwB_AAD_bind PF10412.4 gi|148643758|ref|YP_001274271.1| - 0.11 11.0 0.1 3.9 5.9 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.12 gi|148643758|ref|YP_001274271.1| - 0.15 11.8 3.5 2.8 7.7 0.1 3.4 2 1 1 3 3 3 0 Domain of unknown function DUF87 Mg_chelatase PF01078.16 gi|148643758|ref|YP_001274271.1| - 0.17 10.9 0.1 3.8 6.6 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF3447 PF11929.3 gi|148643758|ref|YP_001274271.1| - 0.2 11.4 2.2 0.5 10.2 0.2 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF3447) Usp PF00582.21 gi|148643759|ref|YP_001274272.1| - 1e-17 64.6 0.3 1.2e-17 64.3 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family Fer4 PF00037.22 gi|148643760|ref|YP_001274273.1| - 9.2e-14 50.3 10.7 2.5e-07 29.9 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|148643760|ref|YP_001274273.1| - 1.9e-08 34.5 9.3 2.7e-08 34.0 6.4 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|148643760|ref|YP_001274273.1| - 3.5e-08 33.1 9.8 4.4e-08 32.7 6.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|148643760|ref|YP_001274273.1| - 1.4e-07 32.0 9.5 0.0018 18.9 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|148643760|ref|YP_001274273.1| - 4.9e-07 29.3 10.8 6.2e-05 22.6 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|148643760|ref|YP_001274273.1| - 3e-06 26.8 12.7 1.5e-05 24.6 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|148643760|ref|YP_001274273.1| - 3.2e-06 27.0 10.3 0.0051 17.0 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|148643760|ref|YP_001274273.1| - 4.2e-06 26.9 12.6 2.7e-05 24.3 8.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|148643760|ref|YP_001274273.1| - 9.7e-06 25.3 10.3 1.9e-05 24.4 7.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|148643760|ref|YP_001274273.1| - 4.4e-05 23.7 9.1 0.032 14.5 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|148643760|ref|YP_001274273.1| - 0.00054 19.9 13.2 0.03 14.3 9.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|148643760|ref|YP_001274273.1| - 0.00095 19.0 5.4 0.0011 18.8 3.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|148643760|ref|YP_001274273.1| - 0.00099 19.5 18.0 0.022 15.3 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|148643760|ref|YP_001274273.1| - 0.0034 17.9 9.0 0.2 12.2 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|148643760|ref|YP_001274273.1| - 0.012 15.9 13.6 0.014 15.8 1.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain DiS_P_DiS PF06750.8 gi|148643760|ref|YP_001274273.1| - 0.033 13.9 2.0 0.042 13.6 1.4 1.1 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Fer4_13 PF13370.1 gi|148643760|ref|YP_001274273.1| - 0.62 10.4 14.8 2.6 8.4 3.7 2.1 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF4001 PF13165.1 gi|148643760|ref|YP_001274273.1| - 7.4 6.3 8.6 4.3 7.0 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4001) FAD_binding_3 PF01494.14 gi|148643761|ref|YP_001274274.1| - 1.2e-17 64.0 2.9 1.3e-16 60.6 2.0 2.3 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|148643761|ref|YP_001274274.1| - 1.2e-11 44.1 1.9 7.9e-06 24.9 0.7 2.7 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|148643761|ref|YP_001274274.1| - 3.2e-08 33.0 4.8 9.5e-08 31.5 2.6 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|148643761|ref|YP_001274274.1| - 3.3e-08 32.5 0.5 1.3e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|148643761|ref|YP_001274274.1| - 9.3e-08 31.3 0.3 1.1e-05 24.5 0.0 2.6 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|148643761|ref|YP_001274274.1| - 1.5e-06 28.2 7.1 6.7e-06 26.1 4.9 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|148643761|ref|YP_001274274.1| - 2.5e-06 26.2 6.1 7.7e-06 24.6 0.4 2.8 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|148643761|ref|YP_001274274.1| - 3e-06 26.3 3.6 3.9e-06 25.9 0.3 2.4 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|148643761|ref|YP_001274274.1| - 3.7e-05 23.6 0.1 0.00015 21.7 0.1 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|148643761|ref|YP_001274274.1| - 5.2e-05 22.2 0.1 5.2e-05 22.2 0.1 2.2 3 0 0 3 3 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|148643761|ref|YP_001274274.1| - 0.00037 19.6 0.7 0.0014 17.7 0.1 2.1 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.1 gi|148643761|ref|YP_001274274.1| - 0.0011 19.0 0.1 0.0041 17.1 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|148643761|ref|YP_001274274.1| - 0.0075 15.8 0.7 0.019 14.5 0.1 2.0 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|148643761|ref|YP_001274274.1| - 0.0081 16.4 0.2 0.025 14.8 0.1 2.1 2 1 0 2 2 1 1 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|148643761|ref|YP_001274274.1| - 0.011 16.1 0.1 0.046 14.1 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ILVD_EDD PF00920.16 gi|148643761|ref|YP_001274274.1| - 0.021 13.2 0.0 0.028 12.8 0.0 1.2 1 0 0 1 1 1 0 Dehydratase family 3HCDH_N PF02737.13 gi|148643761|ref|YP_001274274.1| - 0.036 13.7 0.1 0.1 12.2 0.1 1.8 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TPR_9 PF13371.1 gi|148643761|ref|YP_001274274.1| - 0.12 12.2 0.0 0.33 10.8 0.0 1.7 2 0 0 2 2 2 0 Tetratricopeptide repeat Shikimate_DH PF01488.15 gi|148643761|ref|YP_001274274.1| - 0.17 11.9 1.0 0.52 10.4 0.1 2.1 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.16 gi|148643762|ref|YP_001274275.1| - 3.6e-48 164.0 0.0 4.4e-48 163.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Epimerase_Csub PF13950.1 gi|148643762|ref|YP_001274275.1| - 2.1e-14 53.1 0.2 4.2e-14 52.2 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit RmlD_sub_bind PF04321.12 gi|148643762|ref|YP_001274275.1| - 1e-13 50.8 0.0 3.4e-13 49.1 0.0 1.7 2 0 0 2 2 2 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|148643762|ref|YP_001274275.1| - 2.3e-11 42.9 0.0 5.2e-10 38.4 0.0 2.1 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|148643762|ref|YP_001274275.1| - 5e-10 38.7 0.0 1.1e-07 31.0 0.0 3.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|148643762|ref|YP_001274275.1| - 3.9e-07 30.2 0.0 1.1e-06 28.7 0.0 1.9 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|148643762|ref|YP_001274275.1| - 4.4e-06 25.8 0.0 2.2e-05 23.4 0.0 1.9 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|148643762|ref|YP_001274275.1| - 0.0002 21.3 0.0 0.071 13.0 0.0 2.2 2 0 0 2 2 2 2 short chain dehydrogenase NmrA PF05368.8 gi|148643762|ref|YP_001274275.1| - 0.0013 18.0 0.7 0.1 11.8 0.1 2.9 3 0 0 3 3 3 1 NmrA-like family KR PF08659.5 gi|148643762|ref|YP_001274275.1| - 0.002 17.8 0.0 0.28 10.8 0.0 2.5 2 1 0 2 2 2 1 KR domain UDPG_MGDP_dh_N PF03721.9 gi|148643762|ref|YP_001274275.1| - 0.042 13.2 0.0 0.081 12.3 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF972 PF06156.8 gi|148643763|ref|YP_001274276.1| - 0.012 15.9 1.1 0.03 14.6 0.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Scaffolding_pro PF11418.3 gi|148643763|ref|YP_001274276.1| - 0.018 15.3 3.7 0.043 14.1 0.7 2.5 2 0 0 2 2 2 0 Phi29 scaffolding protein HALZ PF02183.13 gi|148643763|ref|YP_001274276.1| - 0.019 14.6 5.3 1.1 9.0 1.7 3.2 2 1 0 2 2 2 0 Homeobox associated leucine zipper DivIC PF04977.10 gi|148643763|ref|YP_001274276.1| - 0.024 14.0 0.8 0.071 12.6 0.6 1.8 1 0 0 1 1 1 0 Septum formation initiator IncA PF04156.9 gi|148643763|ref|YP_001274276.1| - 0.041 13.4 1.5 0.063 12.8 1.0 1.3 1 0 0 1 1 1 0 IncA protein Nnf1 PF03980.9 gi|148643763|ref|YP_001274276.1| - 0.12 12.3 4.1 0.48 10.4 2.3 2.2 2 0 0 2 2 2 0 Nnf1 GATase_6 PF13522.1 gi|148643764|ref|YP_001274277.1| - 3.4e-25 88.5 0.0 6.6e-25 87.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|148643764|ref|YP_001274277.1| - 7e-25 87.1 0.0 1.1e-24 86.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|148643764|ref|YP_001274277.1| - 2.3e-24 85.7 0.0 7.5e-19 67.6 0.0 2.8 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|148643764|ref|YP_001274277.1| - 2.2e-13 50.0 0.1 5.8e-13 48.6 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|148643764|ref|YP_001274277.1| - 7.3e-13 47.8 0.0 1.1e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Peptidase_U32 PF01136.14 gi|148643765|ref|YP_001274278.1| - 5.5e-76 254.5 0.0 7.2e-76 254.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family U32 GTP_EFTU_D2 PF03144.20 gi|148643765|ref|YP_001274278.1| - 0.036 14.1 0.6 0.092 12.8 0.4 1.7 1 0 0 1 1 1 0 Elongation factor Tu domain 2 PEX11 PF05648.9 gi|148643765|ref|YP_001274278.1| - 0.087 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Peroxisomal biogenesis factor 11 (PEX11) CDP-OH_P_transf PF01066.16 gi|148643766|ref|YP_001274279.1| - 5.3e-09 36.2 17.3 4.7e-08 33.2 12.0 2.1 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Peptidase_M50 PF02163.17 gi|148643766|ref|YP_001274279.1| - 0.72 8.7 13.7 0.012 14.5 4.7 1.6 2 0 0 2 2 2 0 Peptidase family M50 DUF46 PF01864.12 gi|148643766|ref|YP_001274279.1| - 2.8 7.7 12.0 0.84 9.4 1.6 2.1 1 1 1 2 2 2 0 Putative integral membrane protein DUF46 Fer4_NifH PF00142.13 gi|148643767|ref|YP_001274280.1| - 2.2e-98 328.8 2.8 2.4e-98 328.6 1.9 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|148643767|ref|YP_001274280.1| - 7.7e-14 51.5 0.3 2.6e-13 49.8 0.1 1.8 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|148643767|ref|YP_001274280.1| - 1.2e-05 24.4 0.6 0.00032 19.8 0.0 2.4 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|148643767|ref|YP_001274280.1| - 0.00023 21.1 0.0 0.0014 18.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|148643767|ref|YP_001274280.1| - 0.00098 18.6 0.2 0.0033 16.8 0.1 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain DUF87 PF01935.12 gi|148643767|ref|YP_001274280.1| - 0.028 14.2 0.1 0.082 12.7 0.0 1.8 2 1 0 2 2 2 0 Domain of unknown function DUF87 AAA_24 PF13479.1 gi|148643767|ref|YP_001274280.1| - 0.029 13.9 0.1 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|148643767|ref|YP_001274280.1| - 0.03 15.1 1.5 0.14 12.9 1.0 2.2 1 1 0 1 1 1 0 AAA domain ParA PF10609.4 gi|148643767|ref|YP_001274280.1| - 0.038 13.8 0.1 0.2 11.5 0.0 2.1 1 1 1 2 2 2 0 ParA/MinD ATPase like Gp_dh_N PF00044.19 gi|148643767|ref|YP_001274280.1| - 0.049 13.6 0.1 0.3 11.0 0.0 2.1 2 1 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AAA_25 PF13481.1 gi|148643767|ref|YP_001274280.1| - 0.062 12.6 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|148643767|ref|YP_001274280.1| - 0.063 13.4 0.1 0.49 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|148643767|ref|YP_001274280.1| - 0.07 11.8 0.0 0.12 11.1 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_10 PF12846.2 gi|148643767|ref|YP_001274280.1| - 0.076 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain NB-ARC PF00931.17 gi|148643767|ref|YP_001274280.1| - 0.091 11.6 0.3 0.19 10.5 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain ATP_bind_1 PF03029.12 gi|148643767|ref|YP_001274280.1| - 0.092 12.2 0.3 0.21 11.0 0.1 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.22 gi|148643767|ref|YP_001274280.1| - 0.12 12.6 0.1 0.26 11.5 0.0 1.6 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.1 gi|148643767|ref|YP_001274280.1| - 0.15 12.0 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain DUF4399 PF14347.1 gi|148643769|ref|YP_001274282.1| - 8.4e-26 89.8 11.1 9.4e-06 25.5 0.0 6.8 6 1 1 7 7 7 5 Domain of unknown function (DUF4399) Big_1 PF02369.11 gi|148643769|ref|YP_001274282.1| - 2e-06 27.6 46.3 0.00038 20.2 0.8 7.5 4 3 3 7 7 7 4 Bacterial Ig-like domain (group 1) BOF PF04076.8 gi|148643769|ref|YP_001274282.1| - 0.66 9.8 8.4 2.8 7.8 0.1 4.0 4 1 0 4 4 4 0 Bacterial OB fold (BOF) protein tRNA-synt_2b PF00587.20 gi|148643770|ref|YP_001274283.1| - 6.7e-34 116.9 0.0 1.1e-33 116.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|148643770|ref|YP_001274283.1| - 1.8e-22 79.3 2.8 1.8e-22 79.3 2.0 1.7 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain CENP-K PF11802.3 gi|148643770|ref|YP_001274283.1| - 0.067 12.4 2.1 0.36 10.0 1.1 2.0 2 0 0 2 2 2 0 Centromere-associated protein K DUF4164 PF13747.1 gi|148643770|ref|YP_001274283.1| - 0.36 10.9 2.6 0.37 10.9 0.6 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Jnk-SapK_ap_N PF09744.4 gi|148643770|ref|YP_001274283.1| - 0.43 10.5 7.2 0.063 13.2 2.2 1.7 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 CENP-F_leu_zip PF10473.4 gi|148643770|ref|YP_001274283.1| - 0.77 9.6 6.6 4.3 7.2 0.4 2.6 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 zf-ribbon_3 PF13248.1 gi|148643771|ref|YP_001274284.1| - 1e-17 62.7 16.1 5.2e-08 31.8 1.1 3.8 4 0 0 4 4 4 3 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148643771|ref|YP_001274284.1| - 4.1e-17 61.0 25.0 7.9e-07 28.3 2.1 3.7 3 0 0 3 3 3 3 zinc-ribbon domain DZR PF12773.2 gi|148643771|ref|YP_001274284.1| - 5.3e-13 48.5 18.3 1.4e-08 34.4 5.6 2.9 3 0 0 3 3 3 2 Double zinc ribbon SHOCT PF09851.4 gi|148643771|ref|YP_001274284.1| - 4.9e-09 35.3 1.1 7.2e-08 31.6 0.2 2.4 2 0 0 2 2 2 1 Short C-terminal domain UPF0547 PF10571.4 gi|148643771|ref|YP_001274284.1| - 1.2e-05 24.8 18.1 0.00023 20.7 0.6 4.2 4 0 0 4 4 4 2 Uncharacterised protein family UPF0547 DUF4187 PF13821.1 gi|148643771|ref|YP_001274284.1| - 0.0042 16.6 4.2 0.57 9.8 0.2 3.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4187) DUF3217 PF11506.3 gi|148643771|ref|YP_001274284.1| - 0.03 14.0 0.1 0.093 12.4 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3217) zf-C4pol PF14260.1 gi|148643771|ref|YP_001274284.1| - 0.035 14.1 11.6 0.96 9.4 2.9 2.8 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zinc-ribbons_6 PF07191.7 gi|148643771|ref|YP_001274284.1| - 0.064 13.0 15.5 2.9 7.7 0.6 3.5 3 0 0 3 3 3 0 zinc-ribbons Ribosomal_L32p PF01783.18 gi|148643771|ref|YP_001274284.1| - 0.36 11.0 11.3 11 6.2 0.3 3.4 2 1 1 3 3 3 0 Ribosomal L32p protein family Sgf11 PF08209.6 gi|148643771|ref|YP_001274284.1| - 0.78 9.1 14.4 0.36 10.1 0.1 4.3 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-C3HC4_3 PF13920.1 gi|148643771|ref|YP_001274284.1| - 2.6 7.8 19.5 0.96 9.1 0.9 3.4 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_2 PF13923.1 gi|148643771|ref|YP_001274284.1| - 3.8 7.6 10.4 17 5.5 0.4 2.9 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|148643771|ref|YP_001274284.1| - 4.4 7.1 19.1 0.28 10.9 0.8 3.7 3 1 1 4 4 4 0 Prokaryotic RING finger family 1 FYVE PF01363.16 gi|148643771|ref|YP_001274284.1| - 7.1 6.6 15.4 8.9e+02 -0.2 10.7 3.1 1 1 0 1 1 1 0 FYVE zinc finger Ferritin PF00210.19 gi|148643772|ref|YP_001274285.1| - 4e-43 146.5 0.8 4.6e-43 146.3 0.5 1.0 1 0 0 1 1 1 1 Ferritin-like domain RTTN_N PF14726.1 gi|148643772|ref|YP_001274285.1| - 0.008 16.7 0.1 0.017 15.6 0.1 1.6 1 1 0 1 1 1 1 Rotatin, an armadillo repeat protein, centriole functioning ACT PF01842.20 gi|148643773|ref|YP_001274286.1| - 8.5e-13 47.4 0.0 2e-06 27.1 0.0 2.1 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|148643773|ref|YP_001274286.1| - 6.5e-08 32.8 0.3 0.0011 19.2 0.0 2.4 2 1 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|148643773|ref|YP_001274286.1| - 0.02 14.4 0.1 0.96 9.0 0.0 2.5 2 1 0 2 2 2 0 ACT domain DUF3244 PF11589.3 gi|148643773|ref|YP_001274286.1| - 0.088 12.5 0.2 0.22 11.2 0.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3244) PP2C_C PF07830.8 gi|148643773|ref|YP_001274286.1| - 0.58 10.3 2.2 3.4 7.8 0.0 2.5 3 0 0 3 3 3 0 Protein serine/threonine phosphatase 2C, C-terminal domain AMP-binding_C_2 PF14535.1 gi|148643774|ref|YP_001274287.1| - 1.6e-32 111.3 0.3 4.4e-32 109.9 0.2 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|148643774|ref|YP_001274287.1| - 9.9e-20 70.3 0.4 5.6e-19 67.8 0.3 1.9 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|148643774|ref|YP_001274287.1| - 0.029 13.0 0.0 0.057 12.0 0.0 1.4 1 0 0 1 1 1 0 Acyl-protein synthetase, LuxE Toxin_64 PF15542.1 gi|148643774|ref|YP_001274287.1| - 0.92 10.1 3.4 3.1 8.3 0.0 3.2 4 0 0 4 4 4 0 Putative toxin 64 CobN-Mg_chel PF02514.11 gi|148643775|ref|YP_001274288.1| - 1.5e-242 807.4 2.6 8.2e-178 593.0 0.4 2.2 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DUF3344 PF11824.3 gi|148643776|ref|YP_001274289.1| - 1e-82 277.5 45.3 3.3e-46 157.8 13.0 4.0 5 0 0 5 5 5 2 Protein of unknown function (DUF3344) DUF4399 PF14347.1 gi|148643776|ref|YP_001274289.1| - 1.5e-28 98.5 0.3 7.6e-07 29.0 0.0 4.6 3 1 1 4 4 4 4 Domain of unknown function (DUF4399) Big_1 PF02369.11 gi|148643776|ref|YP_001274289.1| - 3.1e-10 39.8 26.0 5.2e-06 26.2 0.8 6.8 3 3 3 6 6 6 4 Bacterial Ig-like domain (group 1) MG1 PF11974.3 gi|148643776|ref|YP_001274289.1| - 7e-07 29.7 0.4 0.23 12.0 0.0 5.8 3 2 1 4 4 4 1 Alpha-2-macroglobulin MG1 domain CarboxypepD_reg PF13620.1 gi|148643776|ref|YP_001274289.1| - 5.2e-06 26.4 12.8 0.00015 21.7 0.5 5.3 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain DUF824 PF05688.6 gi|148643776|ref|YP_001274289.1| - 0.23 11.1 2.6 5.8 6.6 0.1 3.3 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) DUF2162 PF09930.4 gi|148643777|ref|YP_001274290.1| - 2.2e-73 246.1 29.1 2.5e-73 245.9 20.2 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) MotA_ExbB PF01618.11 gi|148643778|ref|YP_001274291.1| - 4.7e-07 29.4 0.0 7.2e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family DUF2149 PF09919.4 gi|148643779|ref|YP_001274292.1| - 4.9e-30 103.4 1.0 5.8e-30 103.2 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) Sigma_reg_N PF13800.1 gi|148643779|ref|YP_001274292.1| - 0.0076 16.2 0.0 0.0094 15.9 0.0 1.2 1 0 0 1 1 1 1 Sigma factor regulator N-terminal Sigma_1s PF02454.11 gi|148643779|ref|YP_001274292.1| - 0.16 11.7 0.9 0.19 11.4 0.6 1.4 1 1 0 1 1 1 0 Sigma 1s protein TFIIS_C PF01096.13 gi|148643780|ref|YP_001274293.1| - 2.1e-17 62.4 3.4 2.1e-17 62.4 2.3 2.9 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|148643780|ref|YP_001274293.1| - 9.1e-06 25.2 3.2 9.1e-06 25.2 2.2 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|148643780|ref|YP_001274293.1| - 0.00028 20.6 6.0 0.16 11.8 0.4 2.4 2 1 0 2 2 2 2 Double zinc ribbon UPF0547 PF10571.4 gi|148643780|ref|YP_001274293.1| - 0.0083 15.8 10.4 4 7.2 0.0 3.8 3 1 0 3 3 3 1 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|148643780|ref|YP_001274293.1| - 0.0098 15.3 8.8 3.1 7.3 0.1 3.5 3 1 0 3 3 3 1 DNA directed RNA polymerase, 7 kDa subunit zf-DNA_Pol PF08996.5 gi|148643780|ref|YP_001274293.1| - 0.054 12.8 0.1 0.054 12.8 0.1 1.8 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger Baculo_LEF5_C PF11792.3 gi|148643780|ref|YP_001274293.1| - 0.079 12.3 0.0 0.079 12.3 0.0 2.4 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain TF_Zn_Ribbon PF08271.7 gi|148643780|ref|YP_001274293.1| - 0.11 11.8 9.2 0.28 10.5 0.5 3.2 4 1 0 4 4 3 0 TFIIB zinc-binding NMD3 PF04981.8 gi|148643780|ref|YP_001274293.1| - 0.12 11.4 5.1 0.37 9.8 0.2 2.4 1 1 1 2 2 2 0 NMD3 family zf-ribbon_3 PF13248.1 gi|148643780|ref|YP_001274293.1| - 0.13 11.5 0.1 0.13 11.5 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148643780|ref|YP_001274293.1| - 0.14 11.7 13.4 6.5 6.3 3.5 4.0 3 1 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|148643780|ref|YP_001274293.1| - 0.14 11.8 8.7 0.96 9.1 0.4 2.6 2 1 0 2 2 2 0 Putative transposase DNA-binding domain DUF35_N PF12172.3 gi|148643780|ref|YP_001274293.1| - 0.17 11.8 2.2 6.4 6.8 0.0 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_5 PF13719.1 gi|148643780|ref|YP_001274293.1| - 0.17 11.4 0.6 0.17 11.4 0.4 4.2 3 2 1 4 4 4 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|148643780|ref|YP_001274293.1| - 0.17 11.5 0.5 0.17 11.5 0.3 4.2 3 2 1 4 4 4 0 zinc-ribbon domain RIG-I_C-RD PF11648.3 gi|148643780|ref|YP_001274293.1| - 0.24 11.2 7.3 1.9 8.3 0.1 2.7 1 1 2 3 3 3 0 C-terminal domain of RIG-I DUF164 PF02591.10 gi|148643780|ref|YP_001274293.1| - 0.3 10.9 3.0 1.6 8.5 0.1 2.8 3 0 0 3 3 3 0 Putative zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|148643780|ref|YP_001274293.1| - 0.33 10.9 8.0 27 4.7 0.0 3.7 3 1 0 3 3 3 0 Zinc ribbon domain DUF2296 PF10058.4 gi|148643780|ref|YP_001274293.1| - 0.34 10.7 3.7 0.86 9.4 0.4 2.5 2 1 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) RRN7 PF11781.3 gi|148643780|ref|YP_001274293.1| - 0.44 10.1 4.2 5.5 6.5 0.1 3.2 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 A2L_zn_ribbon PF08792.5 gi|148643780|ref|YP_001274293.1| - 0.74 9.3 12.8 1 8.8 0.1 4.0 4 0 0 4 4 4 0 A2L zinc ribbon domain Ribosomal_L32p PF01783.18 gi|148643780|ref|YP_001274293.1| - 0.75 10.0 3.4 26 5.0 0.0 2.9 3 0 0 3 3 3 0 Ribosomal L32p protein family Ribosomal_S27e PF01667.12 gi|148643780|ref|YP_001274293.1| - 0.92 9.1 7.2 11 5.6 0.1 3.3 3 1 0 3 3 3 0 Ribosomal protein S27 Zn_ribbon_recom PF13408.1 gi|148643780|ref|YP_001274293.1| - 0.98 9.7 0.1 0.98 9.7 0.1 3.6 2 1 1 3 3 2 0 Recombinase zinc beta ribbon domain Lar_restr_allev PF14354.1 gi|148643780|ref|YP_001274293.1| - 2 8.8 9.9 20 5.5 3.1 3.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.1 gi|148643780|ref|YP_001274293.1| - 2.2 8.0 0.1 2.2 8.0 0.0 3.3 3 0 0 3 3 3 0 Nudix N-terminal IBR PF01485.16 gi|148643780|ref|YP_001274293.1| - 4.4 7.2 10.0 52 3.8 0.0 3.1 2 1 0 2 2 2 0 IBR domain Voltage_CLC PF00654.15 gi|148643781|ref|YP_001274294.1| - 2.7e-80 270.0 30.0 2.7e-80 270.0 20.8 2.0 1 1 1 2 2 2 2 Voltage gated chloride channel TrkA_C PF02080.16 gi|148643781|ref|YP_001274294.1| - 5.1e-12 45.1 0.0 1.3e-11 43.9 0.0 1.7 1 0 0 1 1 1 1 TrkA-C domain FixQ PF05545.6 gi|148643781|ref|YP_001274294.1| - 0.049 13.2 0.0 0.049 13.2 0.0 4.0 4 0 0 4 4 4 0 Cbb3-type cytochrome oxidase component FixQ Nitroreductase PF00881.19 gi|148643782|ref|YP_001274295.1| - 1.8e-32 112.4 0.0 2.6e-32 111.9 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|148643782|ref|YP_001274295.1| - 0.019 14.1 0.1 0.25 10.4 0.0 2.4 2 1 0 2 2 2 0 Putative TM nitroreductase MCH PF02289.11 gi|148643783|ref|YP_001274296.1| - 8.8e-147 488.1 3.3 9.9e-147 487.9 2.3 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) DUF4013 PF13197.1 gi|148643784|ref|YP_001274297.1| - 9.7e-33 112.8 25.0 9.7e-33 112.8 17.3 1.8 3 0 0 3 3 3 1 Protein of unknown function (DUF4013) IncA PF04156.9 gi|148643784|ref|YP_001274297.1| - 0.012 15.1 3.4 0.012 15.1 2.4 3.9 3 1 1 4 4 4 0 IncA protein Flu_M2 PF00599.12 gi|148643784|ref|YP_001274297.1| - 0.075 12.8 0.4 0.25 11.1 0.1 2.0 1 1 0 1 1 1 0 Influenza Matrix protein (M2) EI24 PF07264.6 gi|148643784|ref|YP_001274297.1| - 0.19 11.1 22.5 0.23 10.8 12.2 2.1 1 1 1 2 2 2 0 Etoposide-induced protein 2.4 (EI24) MotA_ExbB PF01618.11 gi|148643784|ref|YP_001274297.1| - 4.5 6.9 9.5 8.4 6.0 0.4 3.0 3 0 0 3 3 3 0 MotA/TolQ/ExbB proton channel family DUF4013 PF13197.1 gi|148643785|ref|YP_001274298.1| - 2.1e-31 108.5 25.7 2.1e-31 108.5 17.8 2.5 1 1 2 3 3 3 1 Protein of unknown function (DUF4013) DUF4013 PF13197.1 gi|148643786|ref|YP_001274299.1| - 1.2e-20 73.5 26.0 1.2e-20 73.5 18.0 2.0 2 1 1 3 3 3 1 Protein of unknown function (DUF4013) HemY_N PF07219.8 gi|148643786|ref|YP_001274299.1| - 0.15 11.6 1.6 1.1 8.8 0.2 2.5 2 0 0 2 2 2 0 HemY protein N-terminus FMN_red PF03358.10 gi|148643787|ref|YP_001274300.1| - 6.7e-21 74.3 0.0 7.8e-21 74.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|148643787|ref|YP_001274300.1| - 4.4e-11 42.6 0.0 8e-11 41.8 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|148643787|ref|YP_001274300.1| - 0.033 14.1 0.0 0.047 13.6 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin domain NADH-G_4Fe-4S_3 PF10588.4 gi|148643787|ref|YP_001274300.1| - 0.19 10.9 2.1 0.21 10.8 0.3 1.8 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Cyclophil_like PF04126.8 gi|148643788|ref|YP_001274301.1| - 1.5e-05 24.5 0.0 1.7e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin-like CD20 PF04103.10 gi|148643789|ref|YP_001274302.1| - 0.15 12.0 13.2 0.076 12.9 3.0 2.4 2 0 0 2 2 2 0 CD20-like family DUF2231 PF09990.4 gi|148643789|ref|YP_001274302.1| - 1.5 9.2 9.0 5.1 7.5 4.4 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) DUF1980 PF09323.5 gi|148643789|ref|YP_001274302.1| - 1.5 8.5 6.6 0.16 11.7 0.3 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF1980) DUF4013 PF13197.1 gi|148643790|ref|YP_001274303.1| - 2.1e-31 108.5 18.7 2.1e-31 108.5 13.0 2.8 2 1 1 3 3 3 1 Protein of unknown function (DUF4013) DUF2189 PF09955.4 gi|148643790|ref|YP_001274303.1| - 7.5 6.5 25.9 1.9 8.4 5.9 3.7 2 1 3 5 5 5 0 Predicted integral membrane protein (DUF2189) adh_short_C2 PF13561.1 gi|148643791|ref|YP_001274304.1| - 9.5e-28 97.5 0.0 1.1e-27 97.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|148643791|ref|YP_001274304.1| - 3e-27 95.5 0.0 3.7e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|148643791|ref|YP_001274304.1| - 8.5e-14 51.6 0.0 1.2e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|148643791|ref|YP_001274304.1| - 0.0049 16.5 0.2 0.0075 15.9 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|148643791|ref|YP_001274304.1| - 0.012 16.0 0.2 0.019 15.3 0.1 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Dus PF01207.12 gi|148643791|ref|YP_001274304.1| - 0.014 14.2 0.0 1.1 8.0 0.0 2.1 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) zinc_ribbon_2 PF13240.1 gi|148643792|ref|YP_001274305.1| - 5.1e-09 35.3 4.9 9.2e-09 34.5 3.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|148643792|ref|YP_001274305.1| - 5.2e-08 32.4 1.3 8.4e-08 31.7 0.9 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|148643792|ref|YP_001274305.1| - 7.9e-08 31.2 3.7 1.3e-07 30.6 2.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148643792|ref|YP_001274305.1| - 2.6e-06 27.1 0.9 4.5e-06 26.3 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|148643792|ref|YP_001274305.1| - 0.0042 16.7 1.2 1.2 8.8 0.1 2.4 2 0 0 2 2 2 2 Nudix N-terminal Prok-RING_1 PF14446.1 gi|148643792|ref|YP_001274305.1| - 0.016 14.9 0.8 0.025 14.2 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 7TM_GPCR_Srt PF10321.4 gi|148643792|ref|YP_001274305.1| - 0.041 12.6 0.8 0.054 12.2 0.6 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srt DUF2116 PF09889.4 gi|148643792|ref|YP_001274305.1| - 0.068 12.9 2.9 0.17 11.7 0.4 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF2072 PF09845.4 gi|148643792|ref|YP_001274305.1| - 0.071 13.0 0.4 0.12 12.3 0.3 1.4 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-DHHC PF01529.15 gi|148643792|ref|YP_001274305.1| - 0.16 11.3 0.3 0.16 11.3 0.2 2.2 2 1 0 2 2 2 0 DHHC palmitoyltransferase NOB1_Zn_bind PF08772.6 gi|148643792|ref|YP_001274305.1| - 0.66 9.8 5.4 7.5 6.4 0.2 2.5 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like FYDLN_acid PF09538.5 gi|148643792|ref|YP_001274305.1| - 0.94 10.0 7.1 2.6 8.6 4.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) A2L_zn_ribbon PF08792.5 gi|148643792|ref|YP_001274305.1| - 3.6 7.1 6.8 4 7.0 0.7 2.5 1 1 1 2 2 2 0 A2L zinc ribbon domain Rubrerythrin PF02915.12 gi|148643793|ref|YP_001274306.1| - 7.1e-23 81.4 8.2 8.8e-22 77.9 5.7 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|148643793|ref|YP_001274306.1| - 8.1e-05 22.3 3.2 0.00012 21.8 2.2 1.2 1 0 0 1 1 1 1 Ferritin-like domain HypA PF01155.14 gi|148643793|ref|YP_001274306.1| - 0.0028 17.3 0.1 0.005 16.4 0.0 1.5 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-C2HC5 PF06221.8 gi|148643793|ref|YP_001274306.1| - 0.005 16.5 0.5 0.0093 15.7 0.4 1.4 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type tRNA-synt_1g PF09334.6 gi|148643793|ref|YP_001274306.1| - 0.0089 14.7 1.0 0.012 14.3 0.1 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (M) DUF3039 PF11238.3 gi|148643793|ref|YP_001274306.1| - 0.018 14.4 0.9 0.036 13.4 0.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) PhnA_Zn_Ribbon PF08274.7 gi|148643793|ref|YP_001274306.1| - 0.042 13.6 0.7 2 8.2 0.0 2.6 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF3279 PF11682.3 gi|148643793|ref|YP_001274306.1| - 0.06 12.9 0.3 0.12 11.9 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) A2L_zn_ribbon PF08792.5 gi|148643793|ref|YP_001274306.1| - 0.093 12.2 0.2 9.2 5.8 0.1 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-UBP PF02148.14 gi|148643793|ref|YP_001274306.1| - 0.18 11.9 0.1 0.18 11.9 0.1 1.7 2 0 0 2 2 1 0 Zn-finger in ubiquitin-hydrolases and other protein TFIIS_C PF01096.13 gi|148643793|ref|YP_001274306.1| - 0.2 11.3 3.8 2 8.0 0.5 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin PF00301.15 gi|148643793|ref|YP_001274306.1| - 0.61 10.0 3.8 22 5.0 2.6 2.4 1 1 0 1 1 1 0 Rubredoxin DUF4379 PF14311.1 gi|148643793|ref|YP_001274306.1| - 2.5 8.0 7.2 1 9.2 2.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4379) Thymidylat_synt PF00303.14 gi|148643794|ref|YP_001274307.1| - 1.1e-20 73.8 0.5 1.6e-20 73.2 0.4 1.3 1 1 0 1 1 1 1 Thymidylate synthase TFIID_90kDa PF04494.10 gi|148643794|ref|YP_001274307.1| - 0.083 12.9 0.3 0.17 11.9 0.2 1.5 1 0 0 1 1 1 0 WD40 associated region in TFIID subunit DUF4399 PF14347.1 gi|148643795|ref|YP_001274308.1| - 2e-32 111.0 8.3 8.7e-11 41.6 0.0 6.5 3 2 3 6 6 6 4 Domain of unknown function (DUF4399) Peptidase_C1 PF00112.18 gi|148643795|ref|YP_001274308.1| - 6.3e-21 75.2 3.0 8e-21 74.9 0.6 2.3 1 1 1 2 2 2 1 Papain family cysteine protease Big_1 PF02369.11 gi|148643795|ref|YP_001274308.1| - 6.1e-18 64.5 32.2 0.00012 21.9 0.1 7.0 4 2 2 6 6 6 5 Bacterial Ig-like domain (group 1) Peptidase_C1_2 PF03051.10 gi|148643795|ref|YP_001274308.1| - 9.3e-06 24.4 2.3 0.0061 15.1 0.1 2.4 2 0 0 2 2 2 2 Peptidase C1-like family Chlam_PMP PF02415.12 gi|148643795|ref|YP_001274308.1| - 0.0091 16.2 52.1 0.18 12.1 0.0 11.0 10 0 0 10 10 10 4 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat DUF2012 PF09430.5 gi|148643795|ref|YP_001274308.1| - 0.14 11.9 3.6 0.37 10.6 0.4 3.3 4 1 0 4 4 4 0 Protein of unknown function (DUF2012) DUF824 PF05688.6 gi|148643795|ref|YP_001274308.1| - 3.8 7.2 11.7 17 5.1 0.0 4.8 5 0 0 5 5 5 0 Salmonella repeat of unknown function (DUF824) Xan_ur_permease PF00860.15 gi|148643796|ref|YP_001274309.1| - 3.8e-34 117.8 48.1 3.8e-34 117.8 33.3 2.3 1 1 1 2 2 2 1 Permease family HTH_45 PF14947.1 gi|148643797|ref|YP_001274310.1| - 7.3e-06 25.7 0.1 1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|148643797|ref|YP_001274310.1| - 0.00027 21.1 0.0 0.00034 20.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|148643797|ref|YP_001274310.1| - 0.0027 17.3 0.0 0.0055 16.3 0.0 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) DUF1495 PF07381.6 gi|148643797|ref|YP_001274310.1| - 0.0055 16.3 0.1 2.5 7.8 0.0 2.1 1 1 1 2 2 2 2 Winged helix DNA-binding domain (DUF1495) PadR PF03551.9 gi|148643797|ref|YP_001274310.1| - 0.014 15.1 0.0 0.025 14.3 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|148643797|ref|YP_001274310.1| - 0.03 14.0 0.0 0.044 13.4 0.0 1.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|148643797|ref|YP_001274310.1| - 0.076 12.8 0.0 0.09 12.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Big_1 PF02369.11 gi|148643798|ref|YP_001274311.1| - 1.7e-06 27.8 0.2 3.7e-06 26.7 0.1 1.6 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|148643798|ref|YP_001274311.1| - 0.00013 21.9 0.0 0.00024 21.0 0.0 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|148643798|ref|YP_001274311.1| - 0.003 17.5 0.0 0.0051 16.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) Cna_B PF05738.8 gi|148643798|ref|YP_001274311.1| - 0.014 15.1 0.3 0.046 13.4 0.1 2.0 2 0 0 2 2 2 0 Cna protein B-type domain FlgD_ig PF13860.1 gi|148643798|ref|YP_001274311.1| - 0.089 12.5 0.1 0.18 11.5 0.0 1.6 2 0 0 2 2 2 0 FlgD Ig-like domain GPI-anchored PF10342.4 gi|148643798|ref|YP_001274311.1| - 0.093 13.2 0.1 3.3 8.2 0.0 2.3 1 1 0 2 2 2 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family zinc_ribbon_2 PF13240.1 gi|148643799|ref|YP_001274312.1| - 3.6e-07 29.4 7.0 5.7e-07 28.8 4.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148643799|ref|YP_001274312.1| - 1.4e-05 24.1 5.0 2.2e-05 23.5 3.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148643799|ref|YP_001274312.1| - 6.9e-05 22.5 0.6 0.0001 22.0 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon CD20 PF04103.10 gi|148643799|ref|YP_001274312.1| - 0.0022 17.9 3.3 0.006 16.5 2.3 1.7 1 1 0 1 1 1 1 CD20-like family DUF3671 PF12420.3 gi|148643799|ref|YP_001274312.1| - 0.0036 17.2 4.2 0.43 10.5 1.5 2.1 2 0 0 2 2 2 2 Protein of unknown function NADH_dehy_S2_C PF06444.6 gi|148643799|ref|YP_001274312.1| - 0.012 15.9 3.4 0.079 13.2 1.1 2.4 2 0 0 2 2 2 0 NADH dehydrogenase subunit 2 C-terminus TM2 PF05154.11 gi|148643799|ref|YP_001274312.1| - 0.013 15.6 9.8 0.013 15.6 6.8 2.2 2 1 0 2 2 2 0 TM2 domain UPF0547 PF10571.4 gi|148643799|ref|YP_001274312.1| - 0.085 12.5 4.1 0.13 11.9 2.8 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 ETRAMP PF09716.5 gi|148643799|ref|YP_001274312.1| - 0.098 12.6 6.1 0.5 10.3 0.5 2.4 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) Nudix_N_2 PF14803.1 gi|148643799|ref|YP_001274312.1| - 0.45 10.2 3.8 1.4 8.7 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal EpsG PF14897.1 gi|148643799|ref|YP_001274312.1| - 0.52 9.1 11.5 1 8.2 8.0 1.4 1 1 0 1 1 1 0 EpsG family SdpI PF13630.1 gi|148643799|ref|YP_001274312.1| - 1 9.0 0.0 1 9.0 0.0 2.9 2 1 1 3 3 3 0 SdpI/YhfL protein family TF_Zn_Ribbon PF08271.7 gi|148643799|ref|YP_001274312.1| - 2.2 7.6 5.6 51 3.2 3.9 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding ABC2_membrane_4 PF12730.2 gi|148643799|ref|YP_001274312.1| - 6.8 5.7 15.5 17 4.4 10.8 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF4181 PF13789.1 gi|148643799|ref|YP_001274312.1| - 6.9 6.6 9.0 1.8 8.5 0.3 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF4181) DUF4234 PF14018.1 gi|148643799|ref|YP_001274312.1| - 9.1 6.1 9.3 52 3.6 3.9 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4234) TPR_11 PF13414.1 gi|148643800|ref|YP_001274313.1| - 2.4e-41 139.2 15.3 2.1e-11 43.3 0.1 5.0 2 2 5 7 7 7 6 TPR repeat TPR_1 PF00515.23 gi|148643800|ref|YP_001274313.1| - 2.3e-34 115.5 23.2 2.2e-07 30.1 0.8 7.9 8 0 0 8 8 8 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|148643800|ref|YP_001274313.1| - 2.5e-30 101.9 11.9 6.5e-06 25.6 0.2 8.1 8 0 0 8 8 8 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|148643800|ref|YP_001274313.1| - 1.6e-21 76.4 0.0 4.8e-05 23.8 0.0 4.6 3 1 2 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|148643800|ref|YP_001274313.1| - 7e-21 74.3 2.4 7.3e-06 26.2 0.0 5.2 3 1 3 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|148643800|ref|YP_001274313.1| - 2.5e-19 67.5 19.6 4.1e-06 26.1 0.3 7.6 8 0 0 8 8 8 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|148643800|ref|YP_001274313.1| - 1.7e-18 66.5 13.9 1.4e-07 31.5 2.0 3.6 1 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.1 gi|148643800|ref|YP_001274313.1| - 7.6e-18 63.3 0.0 0.13 12.9 0.0 7.2 3 2 4 7 7 7 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|148643800|ref|YP_001274313.1| - 1.1e-16 60.5 6.5 0.00074 19.4 0.0 5.5 1 1 5 6 6 6 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|148643800|ref|YP_001274313.1| - 9e-15 53.5 17.8 0.017 15.3 0.2 6.9 7 1 0 7 7 6 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|148643800|ref|YP_001274313.1| - 1.6e-13 50.2 0.1 0.0056 16.5 0.0 5.2 1 1 4 6 6 6 3 Tetratricopeptide repeat NARP1 PF12569.3 gi|148643800|ref|YP_001274313.1| - 8e-10 38.0 0.2 0.039 12.6 0.0 3.7 2 1 1 4 4 4 4 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|148643800|ref|YP_001274313.1| - 3.8e-07 29.8 8.6 0.03 14.1 0.1 5.9 5 2 2 7 7 7 2 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.1 gi|148643800|ref|YP_001274313.1| - 1.2e-06 27.8 5.3 2.5 8.1 0.1 6.4 7 0 0 7 7 7 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|148643800|ref|YP_001274313.1| - 2.9e-05 24.2 2.7 4 8.1 0.0 5.8 8 0 0 8 8 6 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|148643800|ref|YP_001274313.1| - 5.9e-05 23.3 0.3 2.6 8.2 0.0 3.1 3 0 0 3 3 3 2 Alkyl sulfatase dimerisation TPR_20 PF14561.1 gi|148643800|ref|YP_001274313.1| - 0.0002 21.4 1.6 0.0081 16.2 0.3 3.4 3 1 1 4 4 4 1 Tetratricopeptide repeat ChAPs PF09295.5 gi|148643800|ref|YP_001274313.1| - 0.0027 16.5 1.5 0.2 10.3 0.1 2.4 1 1 2 3 3 3 2 ChAPs (Chs5p-Arf1p-binding proteins) RPN7 PF10602.4 gi|148643800|ref|YP_001274313.1| - 0.022 14.1 0.9 0.12 11.6 0.2 2.6 1 1 1 2 2 2 0 26S proteasome subunit RPN7 TPR_4 PF07721.9 gi|148643800|ref|YP_001274313.1| - 0.049 14.0 0.0 1.9 9.1 0.2 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF627 PF04781.7 gi|148643800|ref|YP_001274313.1| - 0.063 12.9 3.8 18 5.0 0.0 4.5 3 2 3 6 6 6 0 Protein of unknown function (DUF627) DUF4363 PF14276.1 gi|148643800|ref|YP_001274313.1| - 0.082 12.6 1.0 0.4 10.4 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) PPR PF01535.15 gi|148643800|ref|YP_001274313.1| - 0.44 10.6 12.5 43 4.3 0.1 5.9 6 0 0 6 6 6 0 PPR repeat PA28_alpha PF02251.13 gi|148643801|ref|YP_001274314.1| - 0.019 15.1 0.3 0.051 13.7 0.2 1.8 1 0 0 1 1 1 0 Proteasome activator pa28 alpha subunit SspH PF08141.7 gi|148643801|ref|YP_001274314.1| - 0.13 12.3 1.0 0.37 10.8 0.7 1.8 1 0 0 1 1 1 0 Small acid-soluble spore protein H family Phage_int_SAM_4 PF13495.1 gi|148643802|ref|YP_001274315.1| - 3.4e-05 24.1 2.0 0.022 15.0 0.1 2.8 3 0 0 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|148643802|ref|YP_001274315.1| - 0.0029 17.7 0.3 0.34 11.0 0.0 3.0 1 1 2 3 3 3 1 Phage integrase, N-terminal SAM-like domain DUF241 PF03087.9 gi|148643802|ref|YP_001274315.1| - 0.39 10.1 3.2 0.66 9.4 0.0 2.6 3 0 0 3 3 3 0 Arabidopsis protein of unknown function Methyltransf_26 PF13659.1 gi|148643803|ref|YP_001274316.1| - 2.3e-14 53.4 0.0 4.9e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|148643803|ref|YP_001274316.1| - 0.00015 21.3 0.0 0.73 9.3 0.1 2.5 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 DUF4316 PF14195.1 gi|148643803|ref|YP_001274316.1| - 0.0063 16.5 3.1 0.018 15.1 2.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4316) DUF4316 PF14195.1 gi|148643805|ref|YP_001274318.1| - 0.57 10.3 7.0 0.1 12.6 1.3 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4316) eRF1_1 PF03463.10 gi|148643806|ref|YP_001274319.1| - 0.44 10.1 6.3 1.8 8.1 0.0 3.0 3 0 0 3 3 3 0 eRF1 domain 1 Methyltransf_26 PF13659.1 gi|148643807|ref|YP_001274320.1| - 4.4e-16 58.9 0.0 8.2e-16 58.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|148643807|ref|YP_001274320.1| - 1.6e-10 41.2 2.2 3.8e-10 40.0 0.2 2.8 2 0 0 2 2 2 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|148643807|ref|YP_001274320.1| - 3.9e-05 23.3 0.0 0.089 12.3 0.0 2.5 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|148643808|ref|YP_001274321.1| - 1.5e-07 31.4 0.0 3.3e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DUF4316 PF14195.1 gi|148643808|ref|YP_001274321.1| - 0.019 15.0 1.3 0.092 12.8 0.9 2.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4316) Fzo_mitofusin PF04799.8 gi|148643808|ref|YP_001274321.1| - 2.4 7.4 7.5 5.9 6.2 1.2 2.5 2 0 0 2 2 2 0 fzo-like conserved region DUF1819 PF08849.6 gi|148643809|ref|YP_001274322.1| - 6.2e-32 110.5 2.3 6.9e-32 110.4 1.6 1.0 1 0 0 1 1 1 1 Putative inner membrane protein (DUF1819) DUF1788 PF08747.6 gi|148643810|ref|YP_001274323.1| - 1.7e-44 150.7 0.2 2.3e-44 150.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) Ribosomal_S8 PF00410.14 gi|148643810|ref|YP_001274323.1| - 0.023 14.5 1.0 0.035 13.9 0.7 1.2 1 0 0 1 1 1 0 Ribosomal protein S8 ArsA_ATPase PF02374.10 gi|148643810|ref|YP_001274323.1| - 0.028 13.4 0.2 0.032 13.2 0.2 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase DUF1359 PF07097.6 gi|148643810|ref|YP_001274323.1| - 2.3 8.3 4.9 12 5.9 3.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1359) DUF1802 PF08819.6 gi|148643812|ref|YP_001274325.1| - 1.5e-45 154.9 0.0 1.7e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1802) PglZ PF08665.7 gi|148643813|ref|YP_001274326.1| - 8e-46 155.9 0.3 2e-45 154.7 0.0 1.8 2 0 0 2 2 2 1 PglZ domain Phosphodiest PF01663.17 gi|148643813|ref|YP_001274326.1| - 0.0046 16.3 0.9 0.028 13.7 0.1 2.2 1 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Lon_2 PF13337.1 gi|148643814|ref|YP_001274327.1| - 3.4e-213 708.0 0.0 4.4e-213 707.7 0.0 1.1 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Lon_C PF05362.8 gi|148643814|ref|YP_001274327.1| - 2.2e-08 33.6 0.0 8.7e-08 31.7 0.0 1.9 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|148643814|ref|YP_001274327.1| - 0.025 14.1 0.0 0.076 12.5 0.0 1.8 2 0 0 2 2 2 0 Subunit ChlI of Mg-chelatase Pribosyltran PF00156.22 gi|148643815|ref|YP_001274328.1| - 5e-06 26.2 0.0 9.7e-06 25.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|148643815|ref|YP_001274328.1| - 0.0024 17.1 0.1 0.0067 15.6 0.0 1.8 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase DNA_processg_A PF02481.10 gi|148643816|ref|YP_001274329.1| - 2e-62 209.8 0.0 2.5e-62 209.5 0.0 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A zf-ribbon_3 PF13248.1 gi|148643818|ref|YP_001274331.1| - 0.00093 18.3 7.2 0.002 17.2 5.0 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148643818|ref|YP_001274331.1| - 0.06 12.8 7.6 0.11 12.0 5.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|148643818|ref|YP_001274331.1| - 0.087 12.6 7.8 0.14 12.0 5.4 1.6 1 1 0 1 1 1 0 Double zinc ribbon DUF2072 PF09845.4 gi|148643818|ref|YP_001274331.1| - 0.29 11.0 4.9 0.38 10.6 3.4 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) NOB1_Zn_bind PF08772.6 gi|148643818|ref|YP_001274331.1| - 0.31 10.9 3.4 0.52 10.1 2.3 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like PLAC8 PF04749.12 gi|148643818|ref|YP_001274331.1| - 0.42 11.2 4.3 4.5 7.8 3.8 1.8 1 1 1 2 2 2 0 PLAC8 family zf-C3HC4_3 PF13920.1 gi|148643818|ref|YP_001274331.1| - 4.9 6.9 8.4 0.31 10.7 2.5 1.6 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.1 gi|148643819|ref|YP_001274332.1| - 3.8e-05 22.7 3.9 7.4e-05 21.8 2.7 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148643819|ref|YP_001274332.1| - 0.0021 17.4 8.2 0.0021 17.4 5.7 1.7 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|148643819|ref|YP_001274332.1| - 0.0034 17.1 4.3 0.0034 17.1 3.0 1.5 1 1 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|148643819|ref|YP_001274332.1| - 0.014 15.0 2.4 0.015 14.9 1.7 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family SelR PF01641.13 gi|148643819|ref|YP_001274332.1| - 0.024 14.3 0.4 0.028 14.0 0.3 1.1 1 0 0 1 1 1 0 SelR domain DUF3953 PF13129.1 gi|148643819|ref|YP_001274332.1| - 0.026 14.1 0.2 0.04 13.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3953) Ribosomal_L37e PF01907.14 gi|148643819|ref|YP_001274332.1| - 0.046 13.5 4.1 0.046 13.5 2.8 1.7 2 1 0 2 2 2 0 Ribosomal protein L37e zf-C2H2_4 PF13894.1 gi|148643819|ref|YP_001274332.1| - 0.15 12.5 4.7 1.8 9.1 0.2 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger NOB1_Zn_bind PF08772.6 gi|148643819|ref|YP_001274332.1| - 0.17 11.7 4.8 0.23 11.3 3.3 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF2072 PF09845.4 gi|148643819|ref|YP_001274332.1| - 0.9 9.4 6.4 1.1 9.1 4.5 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) TF_Zn_Ribbon PF08271.7 gi|148643819|ref|YP_001274332.1| - 1 8.7 5.3 0.77 9.1 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|148643819|ref|YP_001274332.1| - 1.6 8.4 7.3 0.85 9.3 0.6 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-C3HC4_3 PF13920.1 gi|148643819|ref|YP_001274332.1| - 1.7 8.3 7.9 0.15 11.7 2.3 1.6 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF2116 PF09889.4 gi|148643819|ref|YP_001274332.1| - 2.4 8.0 0.0 2.4 8.0 0.0 2.7 2 1 1 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-RING_5 PF14634.1 gi|148643819|ref|YP_001274332.1| - 3.9 7.2 8.6 0.48 10.1 2.9 1.7 2 0 0 2 2 2 0 zinc-RING finger domain HTH_28 PF13518.1 gi|148643821|ref|YP_001274334.1| - 0.00032 20.6 1.7 0.91 9.5 0.0 4.5 5 0 0 5 5 5 2 Helix-turn-helix domain HTH_23 PF13384.1 gi|148643821|ref|YP_001274334.1| - 0.018 14.6 0.1 5.7 6.7 0.0 4.2 6 0 0 6 6 6 0 Homeodomain-like domain HTH_29 PF13551.1 gi|148643821|ref|YP_001274334.1| - 0.12 12.5 0.0 31 4.7 0.0 4.1 4 1 1 5 5 5 0 Winged helix-turn helix zf-ribbon_3 PF13248.1 gi|148643821|ref|YP_001274334.1| - 0.2 10.8 1.9 0.51 9.6 1.3 1.7 1 0 0 1 1 1 0 zinc-ribbon domain DUF448 PF04296.8 gi|148643821|ref|YP_001274334.1| - 0.34 10.5 4.1 2.7 7.6 0.0 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF448) TPR_12 PF13424.1 gi|148643822|ref|YP_001274335.1| - 8.9e-06 25.5 3.9 0.024 14.5 0.0 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|148643822|ref|YP_001274335.1| - 0.0034 16.9 4.9 4.5 6.9 0.1 3.9 3 0 0 3 3 3 2 TPR repeat CSD PF00313.17 gi|148643822|ref|YP_001274335.1| - 0.0051 16.5 0.3 0.011 15.4 0.2 1.6 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain TPR_6 PF13174.1 gi|148643822|ref|YP_001274335.1| - 0.0083 16.5 2.8 4.6 7.9 0.0 4.1 3 1 1 4 4 4 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|148643822|ref|YP_001274335.1| - 0.052 13.6 10.9 0.095 12.8 0.5 4.2 1 1 1 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.1 gi|148643822|ref|YP_001274335.1| - 0.053 14.1 0.0 3.7 8.4 0.0 3.0 2 1 1 3 3 3 0 Tetratricopeptide repeat YqzH PF14164.1 gi|148643822|ref|YP_001274335.1| - 0.093 12.6 2.4 0.79 9.6 0.0 3.3 3 0 0 3 3 3 0 YqzH-like protein TPR_8 PF13181.1 gi|148643822|ref|YP_001274335.1| - 0.2 11.4 8.8 1 9.3 0.1 4.1 3 1 1 4 4 4 0 Tetratricopeptide repeat RNA_POL_M_15KD PF02150.11 gi|148643823|ref|YP_001274336.1| - 0.00024 20.6 5.5 0.00092 18.8 2.9 2.3 2 1 0 2 2 2 1 RNA polymerases M/15 Kd subunit Auto_anti-p27 PF06677.7 gi|148643823|ref|YP_001274336.1| - 0.017 14.8 1.6 0.024 14.4 1.1 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ribosomal_L37e PF01907.14 gi|148643823|ref|YP_001274336.1| - 0.029 14.1 1.0 6.4 6.6 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e DZR PF12773.2 gi|148643823|ref|YP_001274336.1| - 0.037 13.8 0.6 0.051 13.4 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|148643823|ref|YP_001274336.1| - 0.077 12.6 0.4 0.11 12.1 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain SWIM PF04434.12 gi|148643823|ref|YP_001274336.1| - 0.094 12.2 0.1 0.15 11.5 0.1 1.4 1 0 0 1 1 1 0 SWIM zinc finger RPA_interact_C PF14768.1 gi|148643823|ref|YP_001274336.1| - 0.12 12.8 0.1 0.14 12.5 0.1 1.1 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Rpr2 PF04032.11 gi|148643823|ref|YP_001274336.1| - 0.12 12.3 0.4 0.15 11.9 0.3 1.3 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-ribbon_3 PF13248.1 gi|148643823|ref|YP_001274336.1| - 0.15 11.2 5.5 0.79 9.0 4.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|148643823|ref|YP_001274336.1| - 1.6 8.0 4.2 4.9 6.5 2.9 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|148643823|ref|YP_001274336.1| - 4.6 6.8 8.4 2.8 7.5 4.0 2.1 2 1 0 2 2 2 0 zinc-ribbon domain HTH_38 PF13936.1 gi|148643824|ref|YP_001274337.1| - 0.0036 16.8 0.3 0.017 14.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|148643824|ref|YP_001274337.1| - 0.058 13.0 0.0 0.11 12.1 0.0 1.5 2 0 0 2 2 2 0 Homeodomain-like domain HD PF01966.17 gi|148643824|ref|YP_001274337.1| - 0.064 13.2 0.2 0.073 13.0 0.2 1.0 1 0 0 1 1 1 0 HD domain MerR_1 PF13411.1 gi|148643824|ref|YP_001274337.1| - 0.19 11.4 1.2 0.4 10.4 0.8 1.6 1 1 0 1 1 1 0 MerR HTH family regulatory protein DUF4441 PF14536.1 gi|148643824|ref|YP_001274337.1| - 0.22 11.5 2.3 1.5 8.8 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4441) HTH_38 PF13936.1 gi|148643825|ref|YP_001274338.1| - 0.0083 15.6 0.2 0.025 14.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain TPR_11 PF13414.1 gi|148643826|ref|YP_001274339.1| - 1.4e-35 120.7 10.0 1.2e-09 37.7 0.2 4.4 2 2 2 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|148643826|ref|YP_001274339.1| - 3.7e-34 114.9 13.9 3.5e-05 23.2 0.1 7.3 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|148643826|ref|YP_001274339.1| - 1.5e-31 105.7 6.0 0.0016 18.1 0.0 7.2 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|148643826|ref|YP_001274339.1| - 9.7e-24 83.4 0.0 1.1e-06 29.1 0.0 4.9 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|148643826|ref|YP_001274339.1| - 2.7e-22 78.8 0.6 1.6e-06 28.3 0.0 3.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|148643826|ref|YP_001274339.1| - 1.2e-18 65.3 18.2 0.048 13.4 0.1 7.2 5 2 2 7 7 7 7 Tetratricopeptide repeat TPR_17 PF13431.1 gi|148643826|ref|YP_001274339.1| - 1.1e-17 62.7 10.9 0.0037 17.3 0.2 7.4 7 1 1 8 8 7 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|148643826|ref|YP_001274339.1| - 5.5e-17 60.7 0.0 0.16 12.6 0.0 6.9 2 2 5 7 7 7 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|148643826|ref|YP_001274339.1| - 2.1e-14 53.2 6.0 0.0013 18.5 0.1 5.5 1 1 4 6 6 6 6 Tetratricopeptide repeat Apc3 PF12895.2 gi|148643826|ref|YP_001274339.1| - 3.1e-14 52.8 9.8 3e-06 27.2 0.7 3.4 2 2 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|148643826|ref|YP_001274339.1| - 8.8e-12 44.7 0.0 0.0013 18.5 0.0 4.1 2 1 1 4 4 4 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|148643826|ref|YP_001274339.1| - 5.5e-09 35.7 8.3 0.016 15.0 0.8 6.0 3 3 4 7 7 7 2 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.1 gi|148643826|ref|YP_001274339.1| - 4.8e-07 29.1 1.2 6.7 6.7 0.0 5.6 4 1 2 6 6 6 0 Tetratricopeptide repeat NARP1 PF12569.3 gi|148643826|ref|YP_001274339.1| - 2.5e-05 23.2 2.1 0.02 13.6 0.4 2.6 1 1 0 2 2 2 2 NMDA receptor-regulated protein 1 ChAPs PF09295.5 gi|148643826|ref|YP_001274339.1| - 4.2e-05 22.4 1.6 0.088 11.5 0.1 2.5 1 1 0 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) TPR_15 PF13429.1 gi|148643826|ref|YP_001274339.1| - 0.00017 20.7 0.6 0.17 10.9 0.0 3.1 1 1 2 3 3 3 1 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|148643826|ref|YP_001274339.1| - 0.0003 20.1 3.5 0.1 11.8 0.1 2.4 1 1 1 2 2 2 2 Coatomer epsilon subunit TPR_5 PF12688.2 gi|148643826|ref|YP_001274339.1| - 0.0034 17.4 0.0 2.8 7.9 0.0 2.4 2 0 0 2 2 2 2 Tetratrico peptide repeat DUF3856 PF12968.2 gi|148643826|ref|YP_001274339.1| - 0.0059 16.4 0.6 23 4.8 0.0 4.4 2 1 1 4 4 4 0 Domain of Unknown Function (DUF3856) TPR_10 PF13374.1 gi|148643826|ref|YP_001274339.1| - 0.032 14.1 0.3 19 5.3 0.0 4.2 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_20 PF14561.1 gi|148643826|ref|YP_001274339.1| - 0.046 13.8 0.4 1.4 9.1 0.0 2.8 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|148643826|ref|YP_001274339.1| - 0.07 13.6 0.5 31 5.3 0.3 3.8 5 0 0 5 5 3 0 Tetratricopeptide repeat PPTA PF01239.17 gi|148643826|ref|YP_001274339.1| - 3.4 7.1 5.3 2.8 7.4 0.0 3.3 4 0 0 4 4 3 0 Protein prenyltransferase alpha subunit repeat zf-ribbon_3 PF13248.1 gi|148643827|ref|YP_001274340.1| - 1.1e-07 30.7 1.4 1.3e-07 30.5 1.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148643827|ref|YP_001274340.1| - 1.3e-06 27.6 3.4 1.8e-06 27.2 2.1 1.4 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148643827|ref|YP_001274340.1| - 8e-06 25.5 2.2 8.9e-06 25.4 1.6 1.1 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|148643827|ref|YP_001274340.1| - 1e-05 25.0 3.0 1.5e-05 24.5 2.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|148643827|ref|YP_001274340.1| - 0.0001 21.9 1.2 0.00012 21.7 0.8 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|148643827|ref|YP_001274340.1| - 0.0015 17.7 3.8 0.002 17.3 2.4 1.5 1 1 0 1 1 1 1 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|148643827|ref|YP_001274340.1| - 0.003 17.0 3.2 0.46 10.0 0.5 2.1 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.1 gi|148643827|ref|YP_001274340.1| - 0.004 16.8 1.7 0.34 10.6 0.1 2.1 2 0 0 2 2 2 1 Nudix N-terminal Cys_rich_CPXG PF14255.1 gi|148643827|ref|YP_001274340.1| - 0.0081 15.9 6.8 0.11 12.2 0.6 2.2 2 0 0 2 2 2 1 Cysteine-rich CPXCG OrfB_Zn_ribbon PF07282.6 gi|148643827|ref|YP_001274340.1| - 0.0092 15.6 1.1 0.011 15.3 0.8 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF2116 PF09889.4 gi|148643827|ref|YP_001274340.1| - 0.0095 15.7 9.8 0.01 15.6 6.3 1.5 1 1 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) YhfH PF14149.1 gi|148643827|ref|YP_001274340.1| - 0.012 15.3 2.4 0.11 12.3 0.2 2.1 2 0 0 2 2 2 0 YhfH-like protein Prok-RING_4 PF14447.1 gi|148643827|ref|YP_001274340.1| - 0.014 14.9 0.3 0.014 14.9 0.2 1.9 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 DUF2616 PF11077.3 gi|148643827|ref|YP_001274340.1| - 0.014 14.8 0.8 0.014 14.8 0.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) zinc-ribbons_6 PF07191.7 gi|148643827|ref|YP_001274340.1| - 0.017 14.9 1.6 0.019 14.7 1.1 1.1 1 0 0 1 1 1 0 zinc-ribbons zf-RING_3 PF14369.1 gi|148643827|ref|YP_001274340.1| - 0.017 15.0 6.1 0.11 12.4 0.6 2.1 1 1 1 2 2 2 0 zinc-finger A2L_zn_ribbon PF08792.5 gi|148643827|ref|YP_001274340.1| - 0.018 14.4 2.4 0.14 11.6 1.7 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-RING_4 PF14570.1 gi|148643827|ref|YP_001274340.1| - 0.023 14.2 2.7 0.028 13.9 1.9 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain PRP21_like_P PF12230.3 gi|148643827|ref|YP_001274340.1| - 0.024 14.1 0.3 0.068 12.6 0.1 1.7 1 1 1 2 2 2 0 Pre-mRNA splicing factor PRP21 like protein Rubredoxin PF00301.15 gi|148643827|ref|YP_001274340.1| - 0.045 13.6 3.5 1 9.3 0.1 2.1 1 1 1 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|148643827|ref|YP_001274340.1| - 0.077 12.9 5.4 0.7 9.9 0.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain C1_3 PF07649.7 gi|148643827|ref|YP_001274340.1| - 0.082 12.9 2.9 0.097 12.7 2.0 1.1 1 0 0 1 1 1 0 C1-like domain RecR PF02132.10 gi|148643827|ref|YP_001274340.1| - 0.087 12.2 1.4 0.11 11.9 1.0 1.2 1 0 0 1 1 1 0 RecR protein Trm112p PF03966.11 gi|148643827|ref|YP_001274340.1| - 0.1 12.9 0.8 0.17 12.2 0.6 1.5 1 1 0 1 1 1 0 Trm112p-like protein zf-CHCC PF10276.4 gi|148643827|ref|YP_001274340.1| - 0.11 12.3 3.3 1.2 9.0 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger domain DUF1272 PF06906.6 gi|148643827|ref|YP_001274340.1| - 0.12 12.2 1.0 0.15 11.9 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) Lar_restr_allev PF14354.1 gi|148643827|ref|YP_001274340.1| - 0.16 12.3 0.9 0.16 12.3 0.6 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF4187 PF13821.1 gi|148643827|ref|YP_001274340.1| - 0.16 11.5 2.7 0.19 11.3 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4187) zf-tcix PF14952.1 gi|148643827|ref|YP_001274340.1| - 0.18 11.1 1.8 7.3 6.0 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-FPG_IleRS PF06827.9 gi|148643827|ref|YP_001274340.1| - 0.19 11.4 2.0 0.48 10.1 1.4 1.7 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS DUF2296 PF10058.4 gi|148643827|ref|YP_001274340.1| - 0.2 11.4 1.4 4.7 7.0 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DNA_ligase_ZBD PF03119.11 gi|148643827|ref|YP_001274340.1| - 0.21 11.3 0.1 0.21 11.3 0.1 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1595 PF12760.2 gi|148643827|ref|YP_001274340.1| - 0.23 11.2 8.7 1.1 9.1 0.8 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|148643827|ref|YP_001274340.1| - 0.26 11.1 6.5 5.5 6.8 4.5 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-C2HC5 PF06221.8 gi|148643827|ref|YP_001274340.1| - 0.31 10.8 0.3 0.31 10.8 0.2 2.0 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-Mss51 PF13824.1 gi|148643827|ref|YP_001274340.1| - 0.34 10.7 5.7 0.11 12.3 2.1 1.6 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C4_ClpX PF06689.8 gi|148643827|ref|YP_001274340.1| - 0.35 10.4 3.1 1.1 8.8 2.2 1.8 1 1 0 1 1 1 0 ClpX C4-type zinc finger zf-Sec23_Sec24 PF04810.10 gi|148643827|ref|YP_001274340.1| - 0.42 10.2 2.4 1.9 8.0 0.1 2.0 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger FeThRed_B PF02943.10 gi|148643827|ref|YP_001274340.1| - 0.45 10.2 2.9 0.46 10.2 2.0 1.0 1 0 0 1 1 1 0 Ferredoxin thioredoxin reductase catalytic beta chain DUF164 PF02591.10 gi|148643827|ref|YP_001274340.1| - 0.48 10.2 4.4 6.9 6.5 0.2 2.0 1 1 1 2 2 2 0 Putative zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|148643827|ref|YP_001274340.1| - 0.49 10.1 4.3 0.66 9.6 0.2 1.7 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-Di19 PF05605.7 gi|148643827|ref|YP_001274340.1| - 0.52 10.4 11.1 3.1 7.9 2.9 2.5 1 1 2 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding TerY-C PF15616.1 gi|148643827|ref|YP_001274340.1| - 1 9.3 5.1 2.5 8.0 0.2 2.0 1 1 1 2 2 2 0 TerY-C metal binding domain DUF329 PF03884.9 gi|148643827|ref|YP_001274340.1| - 1.1 8.8 3.9 91 2.7 0.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF329) Ribosomal_L37e PF01907.14 gi|148643827|ref|YP_001274340.1| - 1.2 8.9 4.2 2.2 8.1 2.9 1.5 1 1 0 1 1 1 0 Ribosomal protein L37e Auto_anti-p27 PF06677.7 gi|148643827|ref|YP_001274340.1| - 1.2 8.9 7.2 7.6 6.3 0.5 2.0 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2256 PF10013.4 gi|148643827|ref|YP_001274340.1| - 1.2 8.9 5.0 2 8.2 0.5 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) FdhE PF04216.7 gi|148643827|ref|YP_001274340.1| - 1.3 8.6 4.5 1.1 8.9 0.4 1.7 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation DNA_RNApol_7kD PF03604.8 gi|148643827|ref|YP_001274340.1| - 1.9 8.0 4.9 24 4.5 3.0 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ogr_Delta PF04606.7 gi|148643827|ref|YP_001274340.1| - 3.1 7.5 7.3 7.5 6.2 0.7 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger RNHCP PF12647.2 gi|148643827|ref|YP_001274340.1| - 3.1 7.6 7.2 3 7.7 2.0 1.9 1 1 1 2 2 2 0 RNHCP domain Rad50_zn_hook PF04423.9 gi|148643827|ref|YP_001274340.1| - 3.4 7.2 5.6 0.61 9.5 1.2 1.7 1 1 1 2 2 2 0 Rad50 zinc hook motif zf-C2HC_2 PF13913.1 gi|148643827|ref|YP_001274340.1| - 3.6 7.3 7.1 7.3 6.3 0.4 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Cys_rich_KTR PF14205.1 gi|148643827|ref|YP_001274340.1| - 3.9 6.9 5.0 7.5 6.0 0.1 2.1 1 1 1 2 2 2 0 Cysteine-rich KTR zf-IS66 PF13005.2 gi|148643827|ref|YP_001274340.1| - 4.1 7.4 6.7 7.9 6.5 0.3 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-H2C2_2 PF13465.1 gi|148643827|ref|YP_001274340.1| - 6.9 7.1 9.5 8.7 6.8 2.6 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-ISL3 PF14690.1 gi|148643827|ref|YP_001274340.1| - 9.1 6.3 10.7 8.8 6.4 1.1 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2043 PF09740.4 gi|148643827|ref|YP_001274340.1| - 9.9 6.3 6.6 9.9 6.3 4.0 1.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2043) zinc_ribbon_2 PF13240.1 gi|148643828|ref|YP_001274341.1| - 7.8e-07 28.3 2.4 2.1e-06 27.0 1.7 1.8 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|148643828|ref|YP_001274341.1| - 1e-05 25.2 1.1 1e-05 25.2 0.8 2.1 2 1 0 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|148643828|ref|YP_001274341.1| - 0.00039 19.5 1.9 0.00091 18.3 1.3 1.7 1 0 0 1 1 1 1 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|148643828|ref|YP_001274341.1| - 0.021 14.4 3.6 0.021 14.4 2.5 2.1 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.1 gi|148643828|ref|YP_001274341.1| - 0.045 13.3 2.7 0.12 11.9 1.9 1.7 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain UPF0547 PF10571.4 gi|148643828|ref|YP_001274341.1| - 0.047 13.4 3.8 0.047 13.4 2.6 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.6 gi|148643828|ref|YP_001274341.1| - 0.2 11.5 1.6 0.22 11.3 0.4 1.7 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Prok-RING_1 PF14446.1 gi|148643828|ref|YP_001274341.1| - 1.9 8.2 7.4 0.55 9.9 1.9 2.4 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|148643828|ref|YP_001274341.1| - 5.5 6.8 9.5 0.21 11.4 1.4 2.4 2 1 2 4 4 4 0 zinc-ribbons zinc_ribbon_2 PF13240.1 gi|148643829|ref|YP_001274342.1| - 2.2e-12 46.0 12.1 5.4e-08 32.0 3.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148643829|ref|YP_001274342.1| - 4.7e-12 44.7 11.9 8.7e-09 34.3 2.3 2.5 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|148643829|ref|YP_001274342.1| - 1.1e-10 41.0 7.3 1.1e-10 41.0 5.1 1.8 2 0 0 2 2 2 1 Double zinc ribbon UPF0547 PF10571.4 gi|148643829|ref|YP_001274342.1| - 1.2e-06 28.1 11.4 2.2e-06 27.2 0.8 2.8 2 1 1 3 3 3 1 Uncharacterised protein family UPF0547 NMD3 PF04981.8 gi|148643829|ref|YP_001274342.1| - 0.0015 17.7 1.9 0.0015 17.7 1.3 1.9 1 1 1 2 2 2 1 NMD3 family zf-C4pol PF14260.1 gi|148643829|ref|YP_001274342.1| - 0.0074 16.2 10.9 0.069 13.1 2.5 2.1 2 0 0 2 2 2 2 C4-type zinc-finger of DNA polymerase delta NOB1_Zn_bind PF08772.6 gi|148643829|ref|YP_001274342.1| - 0.0081 15.9 11.4 0.16 11.8 0.6 2.6 2 1 0 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like zf-NADH-PPase PF09297.6 gi|148643829|ref|YP_001274342.1| - 0.031 13.7 7.3 3.8 7.1 0.1 4.1 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|148643829|ref|YP_001274342.1| - 0.1 12.3 10.3 0.21 11.4 0.7 2.4 1 1 1 2 2 2 0 zinc-ribbons Prok-RING_1 PF14446.1 gi|148643829|ref|YP_001274342.1| - 0.2 11.4 0.5 0.2 11.4 0.4 2.8 3 1 0 3 3 2 0 Prokaryotic RING finger family 1 Cript PF10235.4 gi|148643829|ref|YP_001274342.1| - 0.23 11.8 0.7 0.23 11.8 0.5 2.6 1 1 2 3 3 3 0 Microtubule-associated protein CRIPT Nudix_N_2 PF14803.1 gi|148643829|ref|YP_001274342.1| - 0.84 9.3 13.8 15 5.3 0.1 4.0 3 1 0 3 3 3 0 Nudix N-terminal zf-C4_Topoisom PF01396.14 gi|148643829|ref|YP_001274342.1| - 1.1 8.7 10.6 2.3 7.7 0.3 3.8 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger DUF1936 PF09151.5 gi|148643829|ref|YP_001274342.1| - 1.2 8.7 4.8 13 5.3 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) zf-ISL3 PF14690.1 gi|148643829|ref|YP_001274342.1| - 1.2 9.1 11.8 22 5.2 0.0 4.0 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.8 gi|148643829|ref|YP_001274342.1| - 1.4 8.4 14.3 0.36 10.3 1.5 3.4 2 2 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit GFA PF04828.9 gi|148643829|ref|YP_001274342.1| - 2.2 8.2 12.7 1.5 8.8 0.1 3.8 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Rubredoxin PF00301.15 gi|148643829|ref|YP_001274342.1| - 2.2 8.2 9.8 18 5.2 0.1 4.1 2 1 1 3 3 3 0 Rubredoxin zf-C4H2 PF10146.4 gi|148643829|ref|YP_001274342.1| - 2.6 8.0 5.5 2.1 8.3 3.3 1.3 1 1 0 1 1 1 0 Zinc finger-containing protein Ogr_Delta PF04606.7 gi|148643829|ref|YP_001274342.1| - 2.7 7.7 12.8 7.1 6.3 0.4 3.5 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger zinc_ribbon_5 PF13719.1 gi|148643829|ref|YP_001274342.1| - 3.7 7.2 11.1 11 5.6 0.1 3.7 3 1 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|148643829|ref|YP_001274342.1| - 3.9 7.8 14.0 5.3 7.4 1.4 3.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-IS66 PF13005.2 gi|148643829|ref|YP_001274342.1| - 5.2 7.1 16.7 19 5.3 0.1 4.6 4 1 0 4 4 4 0 zinc-finger binding domain of transposase IS66 FYDLN_acid PF09538.5 gi|148643829|ref|YP_001274342.1| - 5.3 7.6 6.3 20 5.8 0.6 2.5 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) Cys_rich_CPXG PF14255.1 gi|148643829|ref|YP_001274342.1| - 5.6 6.8 16.4 17 5.3 0.0 4.1 2 1 1 3 3 3 0 Cysteine-rich CPXCG Ribosomal_L37e PF01907.14 gi|148643829|ref|YP_001274342.1| - 7.3 6.4 8.8 0.49 10.2 0.2 2.5 2 1 0 2 2 2 0 Ribosomal protein L37e DUF2085 PF09858.4 gi|148643830|ref|YP_001274343.1| - 3.2e-31 107.2 0.7 4.1e-31 106.9 0.5 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2085) FUSC_2 PF13515.1 gi|148643830|ref|YP_001274343.1| - 0.034 14.0 1.3 0.043 13.7 0.9 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein-like Reticulon PF02453.12 gi|148643830|ref|YP_001274343.1| - 0.19 11.3 1.8 7.4 6.1 0.1 2.1 1 1 1 2 2 2 0 Reticulon UvrD-helicase PF00580.16 gi|148643831|ref|YP_001274344.1| - 1.9e-40 139.1 15.2 1.9e-40 139.1 10.6 3.2 3 1 0 3 3 3 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|148643831|ref|YP_001274344.1| - 3.9e-17 62.7 18.9 1.3e-13 51.1 0.0 4.3 2 2 1 4 4 4 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|148643831|ref|YP_001274344.1| - 5.4e-10 38.8 0.0 1.1e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|148643831|ref|YP_001274344.1| - 4e-09 36.5 0.4 5.5e-08 32.8 0.1 2.9 2 2 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|148643831|ref|YP_001274344.1| - 3.4e-05 23.5 2.3 0.029 13.8 0.6 3.7 2 1 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|148643831|ref|YP_001274344.1| - 5.3e-05 22.9 6.5 0.0001 21.9 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|148643831|ref|YP_001274344.1| - 0.00052 20.1 3.3 0.16 12.1 0.0 4.0 3 1 0 4 4 4 1 AAA domain AAA_30 PF13604.1 gi|148643831|ref|YP_001274344.1| - 0.00055 19.5 0.0 0.013 15.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF2072 PF09845.4 gi|148643831|ref|YP_001274344.1| - 0.059 13.3 2.9 0.17 11.7 2.0 1.9 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) PhoH PF02562.11 gi|148643831|ref|YP_001274344.1| - 0.062 12.5 0.0 0.78 8.9 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein ResIII PF04851.10 gi|148643831|ref|YP_001274344.1| - 0.44 10.3 12.6 1.2 8.9 0.3 3.2 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit RNA_POL_M_15KD PF02150.11 gi|148643831|ref|YP_001274344.1| - 0.46 10.2 3.4 1.3 8.7 2.3 1.8 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|148643832|ref|YP_001274345.1| - 1.3e-20 71.8 24.4 2.6e-08 32.7 2.4 3.3 3 0 0 3 3 3 3 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148643832|ref|YP_001274345.1| - 4.7e-20 70.4 30.1 4.2e-07 29.2 3.3 3.5 3 0 0 3 3 3 3 zinc-ribbon domain DZR PF12773.2 gi|148643832|ref|YP_001274345.1| - 1.1e-18 66.7 33.4 8.5e-11 41.5 6.4 2.3 1 1 1 2 2 2 2 Double zinc ribbon UPF0547 PF10571.4 gi|148643832|ref|YP_001274345.1| - 6.8e-16 57.6 24.8 2.6e-06 27.0 3.3 3.3 3 0 0 3 3 3 3 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|148643832|ref|YP_001274345.1| - 2.9e-06 26.8 21.9 0.98 9.1 0.2 6.2 6 0 0 6 6 6 3 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|148643832|ref|YP_001274345.1| - 6.4e-06 25.3 30.0 0.00061 19.0 3.0 4.5 3 1 1 4 4 4 3 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|148643832|ref|YP_001274345.1| - 0.00031 20.4 23.1 0.046 13.4 0.8 4.0 2 1 2 5 5 5 3 Prokaryotic RING finger family 1 DNA_RNApol_7kD PF03604.8 gi|148643832|ref|YP_001274345.1| - 0.001 18.4 22.1 0.3 10.6 2.4 5.1 3 2 2 5 5 5 2 DNA directed RNA polymerase, 7 kDa subunit PolC_DP2 PF03833.8 gi|148643832|ref|YP_001274345.1| - 0.0026 15.5 7.5 0.0026 15.5 5.2 2.0 1 1 1 2 2 2 1 DNA polymerase II large subunit DP2 YhfH PF14149.1 gi|148643832|ref|YP_001274345.1| - 0.015 15.0 26.1 2.2 8.1 0.3 6.2 4 2 2 6 6 6 0 YhfH-like protein Anoctamin PF04547.7 gi|148643832|ref|YP_001274345.1| - 0.028 13.0 0.0 0.05 12.2 0.0 1.4 1 1 0 1 1 1 0 Calcium-activated chloride channel OrfB_Zn_ribbon PF07282.6 gi|148643832|ref|YP_001274345.1| - 0.053 13.1 23.1 4.6 6.9 3.2 4.0 2 2 1 3 3 3 0 Putative transposase DNA-binding domain DUF2116 PF09889.4 gi|148643832|ref|YP_001274345.1| - 0.074 12.8 26.6 0.073 12.8 1.0 4.0 3 1 1 4 4 4 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-TRM13_CCCH PF11722.3 gi|148643832|ref|YP_001274345.1| - 0.12 11.7 9.4 0.51 9.7 0.4 3.1 3 1 1 4 4 4 0 CCCH zinc finger in TRM13 protein FYVE PF01363.16 gi|148643832|ref|YP_001274345.1| - 0.15 11.9 17.5 0.21 11.4 9.9 2.4 1 1 0 1 1 1 0 FYVE zinc finger Zn_ribbon_recom PF13408.1 gi|148643832|ref|YP_001274345.1| - 0.55 10.5 16.6 9.2 6.6 0.2 5.8 5 1 1 6 6 6 0 Recombinase zinc beta ribbon domain NOB1_Zn_bind PF08772.6 gi|148643832|ref|YP_001274345.1| - 0.84 9.5 26.1 0.12 12.2 1.4 4.6 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_L32p PF01783.18 gi|148643832|ref|YP_001274345.1| - 1.5 9.0 13.3 5.5 7.2 0.4 3.4 2 2 1 3 3 3 0 Ribosomal L32p protein family RNA_POL_M_15KD PF02150.11 gi|148643832|ref|YP_001274345.1| - 1.6 8.4 33.1 1.7 8.4 1.6 5.9 5 1 1 6 6 6 0 RNA polymerases M/15 Kd subunit DNA_ligase_ZBD PF03119.11 gi|148643832|ref|YP_001274345.1| - 2.2 8.0 21.8 0.3 10.8 0.9 4.4 5 1 0 5 5 4 0 NAD-dependent DNA ligase C4 zinc finger domain FYDLN_acid PF09538.5 gi|148643832|ref|YP_001274345.1| - 2.3 8.8 27.2 12 6.5 12.6 3.4 1 1 2 3 3 3 0 Protein of unknown function (FYDLN_acid) zf-C3HC4_3 PF13920.1 gi|148643832|ref|YP_001274345.1| - 4.4 7.0 19.6 1.3 8.7 1.3 3.5 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) RRN7 PF11781.3 gi|148643832|ref|YP_001274345.1| - 4.7 6.7 18.2 19 4.8 0.1 5.2 5 1 0 5 5 5 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn-ribbon_8 PF09723.5 gi|148643832|ref|YP_001274345.1| - 8.6 6.4 30.6 20 5.2 3.2 5.9 2 2 4 6 6 6 0 Zinc ribbon domain DUF2248 PF10005.4 gi|148643832|ref|YP_001274345.1| - 9.4 5.0 19.3 5.1 5.9 1.0 2.4 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2248) zf-tcix PF14952.1 gi|148643832|ref|YP_001274345.1| - 9.7 5.6 23.0 2.4 7.5 0.2 4.7 3 2 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding DZR PF12773.2 gi|148643833|ref|YP_001274346.1| - 6.1e-14 51.5 21.1 4.8e-11 42.2 7.7 2.0 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|148643833|ref|YP_001274346.1| - 8.3e-14 50.5 16.6 1.2e-08 34.1 3.7 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|148643833|ref|YP_001274346.1| - 1e-10 40.4 15.1 6.4e-08 31.5 1.9 2.3 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|148643833|ref|YP_001274346.1| - 3.4e-06 26.6 16.1 0.00012 21.6 2.6 3.0 2 1 0 2 2 2 2 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|148643833|ref|YP_001274346.1| - 0.0003 20.4 14.5 0.26 11.0 0.1 3.9 3 1 0 3 3 3 2 Nudix N-terminal RNA_POL_M_15KD PF02150.11 gi|148643833|ref|YP_001274346.1| - 0.0034 17.0 12.7 0.023 14.3 1.8 3.5 3 1 0 3 3 3 2 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.6 gi|148643833|ref|YP_001274346.1| - 0.0042 16.5 6.7 0.81 9.2 0.0 4.0 4 0 0 4 4 4 1 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.1 gi|148643833|ref|YP_001274346.1| - 0.0051 16.5 10.0 0.077 12.7 0.9 2.8 3 0 0 3 3 2 2 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|148643833|ref|YP_001274346.1| - 0.0055 16.4 9.9 0.72 9.6 4.1 2.5 1 1 2 3 3 3 2 zinc-ribbons NMD3 PF04981.8 gi|148643833|ref|YP_001274346.1| - 0.019 14.1 6.9 0.15 11.1 4.8 2.0 1 1 0 1 1 1 0 NMD3 family DUF2116 PF09889.4 gi|148643833|ref|YP_001274346.1| - 0.022 14.5 13.3 0.15 11.8 0.1 3.1 2 1 1 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) OrfB_Zn_ribbon PF07282.6 gi|148643833|ref|YP_001274346.1| - 0.029 14.0 1.2 0.029 14.0 0.8 2.4 1 1 1 2 2 2 0 Putative transposase DNA-binding domain EamA PF00892.15 gi|148643833|ref|YP_001274346.1| - 0.031 14.3 1.0 0.039 14.0 0.7 1.2 1 0 0 1 1 1 0 EamA-like transporter family zf-C3HC4_3 PF13920.1 gi|148643833|ref|YP_001274346.1| - 0.031 13.9 12.7 0.08 12.6 1.4 2.9 1 1 2 3 3 3 0 Zinc finger, C3HC4 type (RING finger) Claudin_2 PF13903.1 gi|148643833|ref|YP_001274346.1| - 0.032 13.9 0.0 0.032 13.9 0.0 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction TF_Zn_Ribbon PF08271.7 gi|148643833|ref|YP_001274346.1| - 0.038 13.3 0.9 0.038 13.3 0.6 3.2 1 1 1 3 3 3 0 TFIIB zinc-binding Sugar_transport PF06800.7 gi|148643833|ref|YP_001274346.1| - 0.049 12.7 0.5 0.064 12.3 0.3 1.1 1 0 0 1 1 1 0 Sugar transport protein C1_1 PF00130.17 gi|148643833|ref|YP_001274346.1| - 0.049 13.3 14.0 0.052 13.2 0.3 2.6 3 0 0 3 3 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Barwin PF00967.12 gi|148643833|ref|YP_001274346.1| - 0.091 12.4 1.6 0.15 11.7 1.1 1.3 1 0 0 1 1 1 0 Barwin family AA_permease_C PF13906.1 gi|148643833|ref|YP_001274346.1| - 0.11 12.3 1.6 0.29 11.0 1.1 1.7 1 1 0 1 1 1 0 C-terminus of AA_permease Ribosomal_L40e PF01020.12 gi|148643833|ref|YP_001274346.1| - 0.14 11.8 4.7 0.32 10.6 3.3 1.7 1 0 0 1 1 1 0 Ribosomal L40e family YhfH PF14149.1 gi|148643833|ref|YP_001274346.1| - 0.17 11.6 17.2 0.64 9.8 0.4 3.9 2 2 2 4 4 4 0 YhfH-like protein GFA PF04828.9 gi|148643833|ref|YP_001274346.1| - 0.18 11.7 9.8 2.7 7.9 0.4 3.7 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DUF2321 PF10083.4 gi|148643833|ref|YP_001274346.1| - 0.19 11.1 10.3 0.21 11.1 0.5 2.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) DNA_ligase_ZBD PF03119.11 gi|148643833|ref|YP_001274346.1| - 0.29 10.8 4.9 0.69 9.6 0.0 3.2 4 0 0 4 4 3 0 NAD-dependent DNA ligase C4 zinc finger domain DUF35_N PF12172.3 gi|148643833|ref|YP_001274346.1| - 0.61 10.0 8.4 12 5.9 0.1 3.7 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) A2L_zn_ribbon PF08792.5 gi|148643833|ref|YP_001274346.1| - 0.66 9.4 10.3 11 5.6 0.2 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain Rad50_zn_hook PF04423.9 gi|148643833|ref|YP_001274346.1| - 0.67 9.4 3.6 5.9 6.4 0.0 2.9 2 1 1 3 3 3 0 Rad50 zinc hook motif Tnp_zf-ribbon_2 PF13842.1 gi|148643833|ref|YP_001274346.1| - 1.1 9.7 11.2 1.6 9.2 0.9 2.6 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF1272 PF06906.6 gi|148643833|ref|YP_001274346.1| - 1.3 8.8 10.9 1.5 8.6 3.3 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-MYND PF01753.13 gi|148643833|ref|YP_001274346.1| - 1.5 8.7 11.7 0.95 9.3 1.4 2.4 2 0 0 2 2 2 0 MYND finger zf-dskA_traR PF01258.12 gi|148643833|ref|YP_001274346.1| - 1.6 8.5 10.4 36 4.2 2.1 3.5 3 1 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zf-C2H2_4 PF13894.1 gi|148643833|ref|YP_001274346.1| - 1.7 9.1 8.9 30 5.2 0.1 4.1 4 0 0 4 4 4 0 C2H2-type zinc finger RRN7 PF11781.3 gi|148643833|ref|YP_001274346.1| - 1.8 8.1 7.8 20 4.7 0.2 3.8 4 0 0 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF164 PF02591.10 gi|148643833|ref|YP_001274346.1| - 2.5 8.0 13.9 11 5.9 1.5 3.7 1 1 2 3 3 3 0 Putative zinc ribbon domain HypA PF01155.14 gi|148643833|ref|YP_001274346.1| - 6.1 6.5 11.4 8.4 6.1 4.1 2.6 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family PHF5 PF03660.9 gi|148643833|ref|YP_001274346.1| - 6.3 6.9 8.7 11 6.1 4.1 2.3 2 1 0 2 2 2 0 PHF5-like protein zf-DHHC PF01529.15 gi|148643833|ref|YP_001274346.1| - 6.8 6.0 21.1 2.6 7.4 1.9 3.0 1 1 1 2 2 2 0 DHHC palmitoyltransferase Zn_ribbon_2 PF12674.2 gi|148643833|ref|YP_001274346.1| - 9 6.7 8.8 0.64 10.3 1.7 2.2 2 1 0 2 2 2 0 Putative zinc ribbon domain DUF4181 PF13789.1 gi|148643834|ref|YP_001274347.1| - 0.056 13.3 0.9 0.058 13.3 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4181) TPR_11 PF13414.1 gi|148643836|ref|YP_001274349.1| - 1.8e-09 37.1 9.6 5.3e-05 22.7 0.0 4.2 4 0 0 4 4 4 2 TPR repeat TPR_12 PF13424.1 gi|148643836|ref|YP_001274349.1| - 2.4e-08 33.8 2.4 0.0021 17.9 0.2 3.8 3 1 0 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|148643836|ref|YP_001274349.1| - 8.5e-07 28.4 9.3 0.0008 19.1 0.0 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|148643836|ref|YP_001274349.1| - 3.4e-06 26.4 12.6 0.00013 21.4 0.0 4.8 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|148643836|ref|YP_001274349.1| - 0.00014 22.1 0.1 0.052 13.8 0.0 3.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|148643836|ref|YP_001274349.1| - 0.00054 20.3 0.0 0.32 11.7 0.0 3.3 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|148643836|ref|YP_001274349.1| - 0.00065 19.2 12.4 0.0041 16.6 0.0 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|148643836|ref|YP_001274349.1| - 0.00097 19.1 4.8 8.5 6.8 0.1 5.0 6 0 0 6 6 4 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|148643836|ref|YP_001274349.1| - 0.0013 19.3 0.1 0.42 11.3 0.0 4.0 4 0 0 4 4 4 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|148643836|ref|YP_001274349.1| - 0.036 14.1 5.0 3.8 7.7 0.0 3.5 3 1 0 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|148643836|ref|YP_001274349.1| - 0.13 12.2 0.1 4.3 7.4 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|148643836|ref|YP_001274349.1| - 0.16 12.4 4.1 21 5.8 0.0 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|148643836|ref|YP_001274349.1| - 0.19 11.6 2.4 1.8 8.5 0.0 3.6 5 0 0 5 5 5 0 Tetratricopeptide repeat YfiO PF13525.1 gi|148643836|ref|YP_001274349.1| - 1.6 8.1 6.6 6.1 6.2 0.4 3.1 2 1 1 3 3 3 0 Outer membrane lipoprotein HTH_45 PF14947.1 gi|148643837|ref|YP_001274350.1| - 1.7e-06 27.7 2.1 2.1e-06 27.4 1.5 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|148643837|ref|YP_001274350.1| - 0.00024 20.6 0.1 0.00039 20.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|148643837|ref|YP_001274350.1| - 0.0008 18.8 0.3 0.00093 18.6 0.2 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|148643837|ref|YP_001274350.1| - 0.0012 18.6 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.1 gi|148643837|ref|YP_001274350.1| - 0.003 17.2 0.3 0.016 14.8 0.1 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) TrmB PF01978.14 gi|148643837|ref|YP_001274350.1| - 0.0038 16.9 0.1 0.016 14.9 0.0 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|148643837|ref|YP_001274350.1| - 0.0042 17.0 0.3 0.0054 16.7 0.2 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2084 PF09857.4 gi|148643837|ref|YP_001274350.1| - 0.0068 16.0 0.1 0.16 11.6 0.0 2.1 1 1 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2084) PadR PF03551.9 gi|148643837|ref|YP_001274350.1| - 0.012 15.3 0.1 0.022 14.5 0.0 1.6 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family Phage_rep_org_N PF09681.5 gi|148643837|ref|YP_001274350.1| - 0.02 14.4 0.1 0.024 14.1 0.1 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Mrr_N PF14338.1 gi|148643837|ref|YP_001274350.1| - 0.021 14.9 0.0 0.039 14.0 0.0 1.6 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_27 PF13463.1 gi|148643837|ref|YP_001274350.1| - 0.021 15.1 0.1 0.028 14.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|148643837|ref|YP_001274350.1| - 0.026 13.9 0.5 0.064 12.6 0.3 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Replic_Relax PF13814.1 gi|148643837|ref|YP_001274350.1| - 0.036 13.9 0.0 0.041 13.7 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Cdc6_C PF09079.6 gi|148643837|ref|YP_001274350.1| - 0.064 12.9 0.1 0.069 12.8 0.1 1.3 1 1 0 1 1 1 0 CDC6, C terminal DUF3753 PF12575.3 gi|148643838|ref|YP_001274351.1| - 0.0099 15.6 0.4 0.024 14.4 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3753) DUF3848 PF12959.2 gi|148643838|ref|YP_001274351.1| - 0.089 12.7 1.0 0.37 10.7 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3848) DUF2874 PF11396.3 gi|148643838|ref|YP_001274351.1| - 0.43 10.5 5.7 8.5 6.4 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2874) YlbD_coat PF14071.1 gi|148643838|ref|YP_001274351.1| - 0.45 10.5 4.9 0.4 10.7 1.9 1.9 1 1 1 2 2 2 0 Putative coat protein DUF603 PF04645.7 gi|148643838|ref|YP_001274351.1| - 2.7 7.9 12.2 0.27 11.1 1.8 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF603 zf-ribbon_3 PF13248.1 gi|148643839|ref|YP_001274352.1| - 1.5e-11 43.0 14.6 1.9e-06 26.8 2.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|148643839|ref|YP_001274352.1| - 2.6e-10 39.4 15.6 3.4e-06 26.3 2.9 2.7 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|148643839|ref|YP_001274352.1| - 5.4e-10 38.9 15.1 8.4e-10 38.3 10.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon SHOCT PF09851.4 gi|148643839|ref|YP_001274352.1| - 1.8e-06 27.1 1.1 4.7e-06 25.8 0.8 1.7 1 0 0 1 1 1 1 Short C-terminal domain zf-RING_3 PF14369.1 gi|148643839|ref|YP_001274352.1| - 0.0043 17.0 0.6 0.0043 17.0 0.4 2.2 2 1 1 3 3 2 1 zinc-finger zinc-ribbons_6 PF07191.7 gi|148643839|ref|YP_001274352.1| - 0.028 14.2 8.8 0.91 9.3 0.8 2.4 2 0 0 2 2 2 0 zinc-ribbons MRP-S23 PF10484.4 gi|148643839|ref|YP_001274352.1| - 0.028 14.3 0.5 0.24 11.2 0.1 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal protein S23 TF_Zn_Ribbon PF08271.7 gi|148643839|ref|YP_001274352.1| - 0.035 13.4 12.7 0.054 12.8 2.2 2.7 1 1 1 2 2 2 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|148643839|ref|YP_001274352.1| - 0.055 12.9 14.2 0.69 9.4 1.0 3.5 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.1 gi|148643839|ref|YP_001274352.1| - 0.063 12.9 15.9 0.69 9.6 0.1 3.9 3 1 0 3 3 3 0 Nudix N-terminal UPF0547 PF10571.4 gi|148643839|ref|YP_001274352.1| - 0.065 12.9 9.6 4.7 6.9 2.4 3.2 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Histone_HNS PF00816.16 gi|148643839|ref|YP_001274352.1| - 0.15 12.5 1.3 3 8.4 0.0 2.3 2 0 0 2 2 2 0 H-NS histone family tRNA-synt_1g PF09334.6 gi|148643839|ref|YP_001274352.1| - 0.28 9.8 3.7 0.8 8.2 2.5 1.7 1 1 0 1 1 1 0 tRNA synthetases class I (M) GvpG PF05120.7 gi|148643839|ref|YP_001274352.1| - 0.46 10.3 3.8 0.83 9.5 0.2 2.3 2 0 0 2 2 2 0 Gas vesicle protein G OrfB_Zn_ribbon PF07282.6 gi|148643839|ref|YP_001274352.1| - 0.68 9.6 13.3 1 9.0 4.3 3.3 1 1 2 3 3 3 0 Putative transposase DNA-binding domain NMD3 PF04981.8 gi|148643839|ref|YP_001274352.1| - 1.1 8.3 7.4 0.069 12.2 1.0 2.0 3 0 0 3 3 2 0 NMD3 family zf-B_box PF00643.19 gi|148643839|ref|YP_001274352.1| - 1.3 8.9 10.0 2.6 8.0 1.6 2.3 2 0 0 2 2 2 0 B-box zinc finger RNHCP PF12647.2 gi|148643839|ref|YP_001274352.1| - 1.5 8.6 9.4 0.38 10.6 3.2 2.2 1 1 1 2 2 2 0 RNHCP domain zf-DHHC PF01529.15 gi|148643839|ref|YP_001274352.1| - 2.7 7.3 6.1 4.2 6.7 3.6 1.7 1 1 0 1 1 1 0 DHHC palmitoyltransferase zf-tcix PF14952.1 gi|148643839|ref|YP_001274352.1| - 4.8 6.6 14.9 0.98 8.8 4.4 2.5 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding HypA PF01155.14 gi|148643839|ref|YP_001274352.1| - 7.4 6.3 10.7 3.1 7.5 4.0 2.5 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|148643840|ref|YP_001274353.1| - 2.6e-12 45.5 12.4 5e-07 28.7 3.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|148643840|ref|YP_001274353.1| - 5.3e-09 35.7 13.6 8.3e-09 35.1 9.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|148643840|ref|YP_001274353.1| - 2.2e-08 33.3 16.2 4.5e-06 25.9 2.8 3.1 2 1 0 2 2 2 2 zinc-ribbon domain GFA PF04828.9 gi|148643840|ref|YP_001274353.1| - 1.4e-05 24.9 10.6 0.058 13.3 0.5 3.4 1 1 2 3 3 3 3 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.1 gi|148643840|ref|YP_001274353.1| - 0.00037 20.1 12.0 0.96 9.1 0.1 4.1 3 1 1 4 4 4 2 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|148643840|ref|YP_001274353.1| - 0.0084 15.6 12.7 0.2 11.1 3.3 3.9 3 1 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain DUF1430 PF07242.6 gi|148643840|ref|YP_001274353.1| - 0.034 14.2 6.5 0.064 13.3 4.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1430) DUF2116 PF09889.4 gi|148643840|ref|YP_001274353.1| - 0.046 13.5 0.5 0.046 13.5 0.3 4.1 3 1 0 3 3 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) YhfH PF14149.1 gi|148643840|ref|YP_001274353.1| - 0.05 13.3 16.6 1.1 9.1 0.2 4.5 3 1 1 4 4 4 0 YhfH-like protein C1_1 PF00130.17 gi|148643840|ref|YP_001274353.1| - 0.07 12.8 11.2 1.1 9.0 0.9 2.4 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|148643840|ref|YP_001274353.1| - 0.076 12.8 11.8 0.32 10.8 0.7 2.3 1 1 1 2 2 2 0 zinc-ribbons UPF0547 PF10571.4 gi|148643840|ref|YP_001274353.1| - 0.079 12.6 1.4 0.079 12.6 1.0 3.1 2 2 1 3 3 3 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|148643840|ref|YP_001274353.1| - 0.11 12.2 13.6 0.38 10.5 1.8 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF4131 PF13567.1 gi|148643840|ref|YP_001274353.1| - 0.15 11.5 3.0 0.21 10.9 2.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) FYVE PF01363.16 gi|148643840|ref|YP_001274353.1| - 0.17 11.8 12.3 2.4 8.1 8.4 2.1 1 1 1 2 2 2 0 FYVE zinc finger NOB1_Zn_bind PF08772.6 gi|148643840|ref|YP_001274353.1| - 0.2 11.5 18.8 1.2 9.0 0.4 3.4 1 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-C3HC4_3 PF13920.1 gi|148643840|ref|YP_001274353.1| - 0.42 10.3 10.2 2.5 7.8 0.9 2.8 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-dskA_traR PF01258.12 gi|148643840|ref|YP_001274353.1| - 0.44 10.3 15.2 0.78 9.5 0.9 4.0 3 1 1 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger NinF PF05810.7 gi|148643840|ref|YP_001274353.1| - 0.58 9.9 5.7 1.6 8.6 1.2 2.3 1 1 1 2 2 2 0 NinF protein DUF4191 PF13829.1 gi|148643840|ref|YP_001274353.1| - 0.71 8.9 2.7 1 8.4 1.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) zf-CCHC_4 PF14392.1 gi|148643840|ref|YP_001274353.1| - 1 9.0 6.4 36 4.1 0.0 3.5 3 0 0 3 3 3 0 Zinc knuckle zf-B_box PF00643.19 gi|148643840|ref|YP_001274353.1| - 1.1 9.2 10.2 1.6 8.6 0.3 2.7 2 1 0 2 2 2 0 B-box zinc finger DUF2321 PF10083.4 gi|148643840|ref|YP_001274353.1| - 1.3 8.5 9.1 0.58 9.6 2.4 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Pox_A14 PF05767.7 gi|148643840|ref|YP_001274353.1| - 1.8 8.6 7.1 5.4 7.0 4.9 1.8 1 1 0 1 1 1 0 Poxvirus virion envelope protein A14 Cytochrom_c3_2 PF14537.1 gi|148643840|ref|YP_001274353.1| - 1.9 8.9 11.9 3.2 8.1 8.3 1.4 1 0 0 1 1 1 0 Cytochrome c3 TM2 PF05154.11 gi|148643840|ref|YP_001274353.1| - 2.3 8.4 14.5 16 5.7 10.0 2.1 1 1 0 1 1 1 0 TM2 domain HypA PF01155.14 gi|148643840|ref|YP_001274353.1| - 2.9 7.5 12.9 9.2 5.9 5.1 2.4 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C3HC4_2 PF13923.1 gi|148643840|ref|YP_001274353.1| - 3.7 7.6 9.0 6.3 6.9 0.6 2.7 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Zn_ribbon_recom PF13408.1 gi|148643840|ref|YP_001274353.1| - 4.3 7.6 17.5 0.38 11.0 0.2 3.9 1 1 2 3 3 3 0 Recombinase zinc beta ribbon domain Pex24p PF06398.6 gi|148643840|ref|YP_001274353.1| - 4.7 5.8 6.9 0.59 8.8 2.1 1.4 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin Ribosomal_L33 PF00471.15 gi|148643840|ref|YP_001274353.1| - 6.2 7.1 11.3 11 6.3 0.0 3.2 2 1 0 2 2 2 0 Ribosomal protein L33 TF_Zn_Ribbon PF08271.7 gi|148643840|ref|YP_001274353.1| - 6.7 6.1 15.4 18 4.7 2.4 3.8 1 1 3 4 4 4 0 TFIIB zinc-binding Herpes_UL49_1 PF03117.9 gi|148643840|ref|YP_001274353.1| - 7.8 5.5 10.6 34 3.4 7.3 2.4 1 1 0 1 1 1 0 UL49 family DUF3279 PF11682.3 gi|148643840|ref|YP_001274353.1| - 8 6.0 9.7 4.5 6.8 1.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3279) zf-ribbon_3 PF13248.1 gi|148643841|ref|YP_001274354.1| - 9.3e-14 50.1 13.0 2.7e-07 29.5 1.6 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|148643841|ref|YP_001274354.1| - 7.6e-10 38.4 13.7 1.1e-09 37.8 9.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|148643841|ref|YP_001274354.1| - 5.9e-09 35.1 19.5 7.8e-05 22.0 3.6 2.6 2 1 0 2 2 2 2 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|148643841|ref|YP_001274354.1| - 0.00031 20.3 15.3 0.79 9.4 0.1 4.2 3 1 1 4 4 4 1 Nudix N-terminal DUF2321 PF10083.4 gi|148643841|ref|YP_001274354.1| - 0.0019 17.6 6.2 0.024 14.1 0.5 2.1 1 1 1 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2321) PolC_DP2 PF03833.8 gi|148643841|ref|YP_001274354.1| - 0.0064 14.2 6.0 0.0075 13.9 4.2 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 OrfB_Zn_ribbon PF07282.6 gi|148643841|ref|YP_001274354.1| - 0.0099 15.5 2.4 0.0099 15.5 1.7 3.0 1 1 2 3 3 3 1 Putative transposase DNA-binding domain Cript PF10235.4 gi|148643841|ref|YP_001274354.1| - 0.035 14.4 10.9 0.086 13.2 3.8 2.1 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT zinc-ribbons_6 PF07191.7 gi|148643841|ref|YP_001274354.1| - 0.039 13.7 9.7 3.2 7.6 6.9 2.2 1 1 1 2 2 2 0 zinc-ribbons GFA PF04828.9 gi|148643841|ref|YP_001274354.1| - 0.046 13.6 10.8 0.63 10.0 0.0 3.3 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Auto_anti-p27 PF06677.7 gi|148643841|ref|YP_001274354.1| - 0.056 13.2 2.4 0.056 13.2 1.6 3.2 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-Di19 PF05605.7 gi|148643841|ref|YP_001274354.1| - 0.076 13.1 6.1 0.12 12.4 4.2 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Zn_ribbon_recom PF13408.1 gi|148643841|ref|YP_001274354.1| - 0.11 12.7 9.1 14 5.9 0.0 3.7 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.8 gi|148643841|ref|YP_001274354.1| - 0.19 11.2 13.8 0.14 11.6 1.7 3.2 1 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit tRNA-synt_1g PF09334.6 gi|148643841|ref|YP_001274354.1| - 0.38 9.3 5.0 1.9 7.0 0.5 2.0 1 1 1 2 2 2 0 tRNA synthetases class I (M) DNA_ligase_ZBD PF03119.11 gi|148643841|ref|YP_001274354.1| - 0.4 10.4 4.2 13 5.6 0.2 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|148643841|ref|YP_001274354.1| - 0.49 9.7 16.1 1.2 8.5 3.6 3.4 1 1 2 3 3 3 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|148643841|ref|YP_001274354.1| - 0.58 9.8 18.9 1.2 8.8 3.2 3.4 2 2 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|148643841|ref|YP_001274354.1| - 0.6 10.1 13.7 1.6 8.7 1.3 3.3 2 1 1 3 3 3 0 Zinc ribbon domain Fer2_3 PF13085.1 gi|148643841|ref|YP_001274354.1| - 0.81 9.5 3.2 0.44 10.3 0.5 1.7 1 1 1 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain DUF2207 PF09972.4 gi|148643841|ref|YP_001274354.1| - 0.84 8.1 3.9 1 7.8 2.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Prok-RING_1 PF14446.1 gi|148643841|ref|YP_001274354.1| - 0.88 9.3 14.4 2.8 7.7 2.6 3.0 1 1 3 4 4 4 0 Prokaryotic RING finger family 1 DUF2248 PF10005.4 gi|148643841|ref|YP_001274354.1| - 0.98 8.2 5.9 0.57 9.0 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2248) zf-C3HC4 PF00097.20 gi|148643841|ref|YP_001274354.1| - 1 9.0 14.3 0.14 11.8 1.7 3.2 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) NMD3 PF04981.8 gi|148643841|ref|YP_001274354.1| - 1.1 8.3 7.9 7 5.6 5.5 1.9 1 1 0 1 1 1 0 NMD3 family DUF1610 PF07754.6 gi|148643841|ref|YP_001274354.1| - 1.1 9.4 23.1 0.53 10.4 3.7 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF1610) zf-C3HC4_4 PF15227.1 gi|148643841|ref|YP_001274354.1| - 1.4 8.8 12.2 21 5.1 6.2 2.9 2 1 1 3 3 3 0 zinc finger of C3HC4-type, RING RNA_POL_M_15KD PF02150.11 gi|148643841|ref|YP_001274354.1| - 1.4 8.6 19.8 0.81 9.4 1.6 3.4 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit YhfH PF14149.1 gi|148643841|ref|YP_001274354.1| - 1.6 8.5 18.4 0.87 9.4 0.6 3.9 1 1 3 4 4 4 0 YhfH-like protein NOB1_Zn_bind PF08772.6 gi|148643841|ref|YP_001274354.1| - 2 8.2 22.1 0.49 10.2 0.3 4.1 1 1 2 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.14 gi|148643841|ref|YP_001274354.1| - 2.2 8.0 11.4 4.2 7.1 4.3 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-NADH-PPase PF09297.6 gi|148643841|ref|YP_001274354.1| - 2.3 7.8 14.0 6.8 6.2 2.3 3.5 2 1 1 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|148643841|ref|YP_001274354.1| - 2.6 7.6 16.5 0.79 9.2 0.3 4.0 2 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Zn_ribbon_2 PF12674.2 gi|148643841|ref|YP_001274354.1| - 4.5 7.6 7.5 44 4.5 0.0 2.4 2 0 0 2 2 2 0 Putative zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|148643841|ref|YP_001274354.1| - 6 6.6 13.8 1.4 8.6 0.2 3.6 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|148643841|ref|YP_001274354.1| - 6.5 6.4 13.7 1.4 8.5 0.2 3.6 3 1 1 4 4 4 0 zinc-ribbon domain RNHCP PF12647.2 gi|148643841|ref|YP_001274354.1| - 8.9 6.2 11.3 12 5.7 4.1 2.8 1 1 2 3 3 3 0 RNHCP domain FYVE PF01363.16 gi|148643841|ref|YP_001274354.1| - 9.6 6.1 11.6 46 4.0 8.1 2.0 1 1 0 1 1 1 0 FYVE zinc finger MCR_alpha PF02249.12 gi|148643842|ref|YP_001274355.1| - 3.4 7.6 5.4 2.7 7.9 2.6 1.7 1 1 0 2 2 2 0 Methyl-coenzyme M reductase alpha subunit, C-terminal domain Phage_pRha PF09669.5 gi|148643843|ref|YP_001274356.1| - 0.00082 19.6 0.0 0.001 19.3 0.0 1.3 1 0 0 1 1 1 1 Phage regulatory protein Rha (Phage_pRha) YARHG PF13308.1 gi|148643843|ref|YP_001274356.1| - 0.13 11.8 0.4 0.23 11.0 0.3 1.4 1 0 0 1 1 1 0 YARHG domain TPR_11 PF13414.1 gi|148643846|ref|YP_001274359.1| - 1.1e-14 53.7 0.2 3e-07 30.0 0.0 3.0 1 1 2 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|148643846|ref|YP_001274359.1| - 3.8e-10 38.8 0.3 0.37 10.8 0.0 5.0 5 0 0 5 5 5 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|148643846|ref|YP_001274359.1| - 1.1e-08 35.1 5.9 4.2e-05 23.5 0.2 2.7 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|148643846|ref|YP_001274359.1| - 2.2e-07 31.0 0.2 0.0049 17.1 0.0 2.9 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|148643846|ref|YP_001274359.1| - 8.4e-06 25.1 4.1 0.099 12.2 0.0 4.5 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|148643846|ref|YP_001274359.1| - 1.1e-05 25.9 0.0 0.0027 18.3 0.0 3.2 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|148643846|ref|YP_001274359.1| - 0.001 18.9 0.1 2.3 8.2 0.0 3.3 1 1 3 4 4 4 3 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|148643846|ref|YP_001274359.1| - 0.011 15.0 2.2 1.3 8.1 0.1 2.7 1 1 2 3 3 3 0 Coatomer epsilon subunit Fis1_TPR_C PF14853.1 gi|148643846|ref|YP_001274359.1| - 0.028 14.2 2.1 6.8 6.6 0.0 3.4 2 1 2 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat PPTA PF01239.17 gi|148643846|ref|YP_001274359.1| - 0.098 12.0 0.1 0.45 9.9 0.0 2.2 2 0 0 2 2 2 0 Protein prenyltransferase alpha subunit repeat TPR_19 PF14559.1 gi|148643847|ref|YP_001274360.1| - 8.8e-16 58.0 4.7 0.037 14.3 0.1 6.0 6 1 0 6 6 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|148643847|ref|YP_001274360.1| - 1.7e-11 43.1 5.5 0.077 12.9 0.1 6.5 9 0 0 9 9 7 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|148643847|ref|YP_001274360.1| - 3.2e-10 39.4 13.5 2.3e-06 27.1 0.0 5.0 4 1 0 4 4 4 3 TPR repeat Apc3 PF12895.2 gi|148643847|ref|YP_001274360.1| - 2.2e-08 34.1 12.0 0.0083 16.2 0.2 5.1 3 2 1 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.1 gi|148643847|ref|YP_001274360.1| - 2.8e-08 33.5 6.9 0.15 12.0 0.0 5.6 3 3 3 6 6 6 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|148643847|ref|YP_001274360.1| - 1.4e-07 30.7 13.9 0.034 13.9 0.3 6.5 7 0 0 7 7 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|148643847|ref|YP_001274360.1| - 1.8e-07 31.6 0.0 3.3 8.5 0.1 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|148643847|ref|YP_001274360.1| - 1e-06 28.0 14.5 0.028 14.0 0.0 6.4 8 0 0 8 8 7 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|148643847|ref|YP_001274360.1| - 1.1e-05 24.6 0.8 0.11 11.4 0.1 2.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|148643847|ref|YP_001274360.1| - 1.5e-05 25.1 0.0 33 5.4 0.0 6.8 5 2 3 8 8 7 0 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|148643847|ref|YP_001274360.1| - 2.4e-05 23.6 10.1 0.005 16.0 0.2 4.1 2 1 2 4 4 4 2 Coatomer epsilon subunit TPR_20 PF14561.1 gi|148643847|ref|YP_001274360.1| - 0.00035 20.6 2.2 10 6.3 0.1 4.9 3 2 2 5 5 5 0 Tetratricopeptide repeat TPR_17 PF13431.1 gi|148643847|ref|YP_001274360.1| - 0.00047 20.1 5.2 2.8 8.3 0.0 5.5 5 0 0 5 5 5 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|148643847|ref|YP_001274360.1| - 0.0057 16.8 1.9 0.43 10.7 0.0 3.2 2 1 1 3 3 3 1 Alkyl sulfatase dimerisation TPR_7 PF13176.1 gi|148643847|ref|YP_001274360.1| - 0.0065 16.1 0.2 12 5.9 0.0 4.5 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|148643847|ref|YP_001274360.1| - 0.0078 16.1 0.6 0.86 9.6 0.0 3.7 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|148643847|ref|YP_001274360.1| - 0.093 12.6 1.0 1.1 9.2 0.0 2.9 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_11 PF13414.1 gi|148643848|ref|YP_001274361.1| - 1.2e-25 88.9 24.8 2.8e-10 39.6 1.8 3.4 1 1 3 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|148643848|ref|YP_001274361.1| - 4.6e-20 70.3 23.6 5.8e-05 22.5 1.2 5.3 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|148643848|ref|YP_001274361.1| - 1.6e-17 61.9 15.6 0.00011 21.8 0.7 5.2 4 1 1 5 5 5 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|148643848|ref|YP_001274361.1| - 2.2e-17 62.6 16.6 5.7e-08 32.5 1.0 5.1 4 1 1 5 5 5 3 Fis1 C-terminal tetratricopeptide repeat Apc3 PF12895.2 gi|148643848|ref|YP_001274361.1| - 3.2e-13 49.6 17.4 4.7e-08 33.0 3.4 3.3 1 1 3 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|148643848|ref|YP_001274361.1| - 7.7e-12 45.3 2.7 1.2e-05 25.5 0.0 3.8 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|148643848|ref|YP_001274361.1| - 6.5e-09 36.2 0.0 0.00024 21.6 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|148643848|ref|YP_001274361.1| - 7.7e-09 35.2 0.0 0.00068 19.4 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|148643848|ref|YP_001274361.1| - 7.2e-07 29.0 7.1 0.066 13.1 0.3 4.4 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|148643848|ref|YP_001274361.1| - 5.3e-05 23.4 0.0 8.6 7.3 0.0 4.3 2 1 3 5 5 4 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|148643848|ref|YP_001274361.1| - 0.00022 20.7 4.9 4.8 7.2 0.0 4.7 3 2 1 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|148643848|ref|YP_001274361.1| - 0.00026 21.2 1.7 6.6 7.4 0.0 4.8 5 0 0 5 5 5 1 Tetratricopeptide repeat Rapsyn_N PF10579.4 gi|148643848|ref|YP_001274361.1| - 0.0012 18.5 0.5 2.2 8.1 0.0 2.6 3 0 0 3 3 2 2 Rapsyn N-terminal myristoylation and linker region TPR_8 PF13181.1 gi|148643848|ref|YP_001274361.1| - 0.0016 18.0 21.2 0.62 9.9 0.9 5.4 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|148643848|ref|YP_001274361.1| - 0.022 14.8 18.9 0.039 14.1 1.2 5.7 5 2 0 5 5 5 0 Tetratricopeptide repeat MtrA PF04208.9 gi|148643848|ref|YP_001274361.1| - 0.035 13.5 0.1 3.7 6.9 0.0 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit A Alkyl_sulf_dimr PF14863.1 gi|148643848|ref|YP_001274361.1| - 0.047 13.9 1.0 23 5.1 0.0 3.6 2 1 1 4 4 4 0 Alkyl sulfatase dimerisation TPR_3 PF07720.7 gi|148643848|ref|YP_001274361.1| - 0.23 11.3 11.2 5.2 6.9 0.0 5.0 5 1 0 5 5 5 0 Tetratricopeptide repeat MIT PF04212.13 gi|148643848|ref|YP_001274361.1| - 1.8 8.5 9.8 4.7 7.1 0.3 4.2 5 1 1 6 6 5 0 MIT (microtubule interacting and transport) domain PPTA PF01239.17 gi|148643848|ref|YP_001274361.1| - 6.7 6.2 8.1 3.4 7.1 0.1 3.5 3 0 0 3 3 3 0 Protein prenyltransferase alpha subunit repeat AAA_14 PF13173.1 gi|148643849|ref|YP_001274362.1| - 1.2e-20 73.6 1.0 3.1e-20 72.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.1 gi|148643849|ref|YP_001274362.1| - 8.1e-07 29.1 0.0 1.5e-06 28.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) HTH_24 PF13412.1 gi|148643849|ref|YP_001274362.1| - 0.00017 20.8 0.5 0.00044 19.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AAA PF00004.24 gi|148643849|ref|YP_001274362.1| - 0.00027 21.1 0.0 0.016 15.4 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HTH_36 PF13730.1 gi|148643849|ref|YP_001274362.1| - 0.0011 19.0 0.0 0.0038 17.3 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|148643849|ref|YP_001274362.1| - 0.0032 17.2 0.0 0.0085 15.8 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|148643849|ref|YP_001274362.1| - 0.0039 16.7 0.1 0.023 14.3 0.0 2.2 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.15 gi|148643849|ref|YP_001274362.1| - 0.0063 16.6 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_3 PF01381.17 gi|148643849|ref|YP_001274362.1| - 0.0075 16.0 0.0 0.021 14.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix B-block_TFIIIC PF04182.7 gi|148643849|ref|YP_001274362.1| - 0.011 15.5 0.2 0.036 13.9 0.0 2.0 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC NACHT PF05729.7 gi|148643849|ref|YP_001274362.1| - 0.017 14.7 0.0 0.056 13.1 0.0 1.9 2 0 0 2 2 2 0 NACHT domain HTH_23 PF13384.1 gi|148643849|ref|YP_001274362.1| - 0.025 14.2 0.0 0.068 12.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain EAP30 PF04157.11 gi|148643849|ref|YP_001274362.1| - 0.047 12.8 0.0 0.083 12.0 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family AAA_22 PF13401.1 gi|148643849|ref|YP_001274362.1| - 0.049 13.7 0.0 0.43 10.7 0.0 2.4 1 1 0 1 1 1 0 AAA domain Arf PF00025.16 gi|148643849|ref|YP_001274362.1| - 0.052 12.7 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family NB-ARC PF00931.17 gi|148643849|ref|YP_001274362.1| - 0.058 12.2 0.1 0.34 9.7 0.1 2.1 1 1 0 1 1 1 0 NB-ARC domain MarR PF01047.17 gi|148643849|ref|YP_001274362.1| - 0.064 12.9 0.1 0.17 11.5 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_Tnp_ISL3 PF13542.1 gi|148643849|ref|YP_001274362.1| - 0.072 12.2 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 MarR_2 PF12802.2 gi|148643849|ref|YP_001274362.1| - 0.095 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family AAA_14 PF13173.1 gi|148643850|ref|YP_001274363.1| - 6.5e-24 84.2 0.4 6.5e-24 84.2 0.3 2.1 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.1 gi|148643850|ref|YP_001274363.1| - 1.3e-05 25.2 0.0 3.2e-05 24.0 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_22 PF13401.1 gi|148643850|ref|YP_001274363.1| - 0.024 14.7 0.0 0.46 10.6 0.0 2.4 1 1 0 1 1 1 0 AAA domain DNApol3-delta_C PF09115.5 gi|148643850|ref|YP_001274363.1| - 0.03 14.3 2.2 0.031 14.3 0.3 1.9 2 0 0 2 2 2 0 DNA polymerase III, delta subunit, C terminal B-block_TFIIIC PF04182.7 gi|148643850|ref|YP_001274363.1| - 0.034 13.9 0.3 0.096 12.5 0.0 1.8 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC AAA PF00004.24 gi|148643850|ref|YP_001274363.1| - 0.097 12.8 0.0 0.33 11.1 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|148643850|ref|YP_001274363.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain HTH_11 PF08279.7 gi|148643850|ref|YP_001274363.1| - 0.23 11.1 1.6 0.37 10.4 0.1 2.1 2 0 0 2 2 2 0 HTH domain NAPRTase PF04095.11 gi|148643852|ref|YP_001274365.1| - 1.8e-51 174.7 0.3 2.3e-51 174.4 0.2 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family DsbC_N PF10411.4 gi|148643853|ref|YP_001274366.1| - 0.11 11.7 0.0 0.22 10.8 0.0 1.6 1 1 0 1 1 1 0 Disulfide bond isomerase protein N-terminus PRP1_N PF06424.7 gi|148643854|ref|YP_001274367.1| - 1.1 9.6 5.6 0.35 11.1 1.8 1.7 2 0 0 2 2 2 0 PRP1 splicing factor, N-terminal AAA_14 PF13173.1 gi|148643855|ref|YP_001274368.1| - 1.5e-36 125.1 1.2 1.5e-36 125.1 0.8 3.0 3 1 1 4 4 4 1 AAA domain DUF4143 PF13635.1 gi|148643855|ref|YP_001274368.1| - 1.5e-09 37.9 2.6 2.1e-09 37.4 1.4 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|148643855|ref|YP_001274368.1| - 4.6e-08 33.0 3.8 4.6e-08 33.0 2.7 3.1 3 1 1 4 4 4 1 Archaeal ATPase Trans_reg_C PF00486.23 gi|148643855|ref|YP_001274368.1| - 0.00014 21.6 0.7 0.00079 19.2 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal NACHT PF05729.7 gi|148643855|ref|YP_001274368.1| - 0.00043 19.9 0.0 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 NACHT domain YflT PF11181.3 gi|148643855|ref|YP_001274368.1| - 0.0023 18.0 0.1 0.0072 16.4 0.1 1.8 1 0 0 1 1 1 1 Heat induced stress protein YflT HTH_11 PF08279.7 gi|148643855|ref|YP_001274368.1| - 0.016 14.8 0.3 0.099 12.3 0.2 2.4 1 1 0 1 1 1 0 HTH domain AAA_22 PF13401.1 gi|148643855|ref|YP_001274368.1| - 0.042 14.0 0.1 0.56 10.3 0.0 2.6 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|148643855|ref|YP_001274368.1| - 0.048 13.3 0.0 0.16 11.7 0.0 1.9 2 0 0 2 2 2 0 NTPase AAA PF00004.24 gi|148643855|ref|YP_001274368.1| - 0.05 13.7 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|148643855|ref|YP_001274368.1| - 0.059 13.3 0.0 0.2 11.5 0.0 1.8 2 1 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.22 gi|148643855|ref|YP_001274368.1| - 0.069 13.4 0.1 0.33 11.2 0.0 2.2 2 0 0 2 2 2 0 ABC transporter