# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- TrmB PF01978.14 gi|284176393|ref|YP_003406668.1| - 2.6e-05 23.8 0.0 4.2e-05 23.1 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284176393|ref|YP_003406668.1| - 0.0018 18.0 0.0 0.0043 16.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|284176393|ref|YP_003406668.1| - 0.04 14.0 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.2 gi|284176393|ref|YP_003406668.1| - 0.057 13.1 0.0 0.2 11.3 0.0 1.9 1 1 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|284176393|ref|YP_003406668.1| - 0.058 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|284176393|ref|YP_003406668.1| - 0.058 13.1 0.0 0.35 10.6 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF4423 PF14394.1 gi|284176393|ref|YP_003406668.1| - 0.11 12.0 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_11 PF08279.7 gi|284176393|ref|YP_003406668.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.6 2 0 0 2 2 2 0 HTH domain TMEM18 PF14770.1 gi|284176395|ref|YP_003406670.1| - 0.086 12.3 0.7 0.11 12.0 0.5 1.1 1 0 0 1 1 1 0 Transmembrane protein 18 IFT46_B_C PF12317.3 gi|284176396|ref|YP_003406671.1| - 0.0025 17.2 0.4 0.0035 16.7 0.3 1.2 1 0 0 1 1 1 1 Intraflagellar transport complex B protein 46 C terminal HXXSHH PF07586.6 gi|284176396|ref|YP_003406671.1| - 0.0085 15.0 0.3 0.015 14.2 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1552) ATG16 PF08614.6 gi|284176396|ref|YP_003406671.1| - 0.0089 15.8 0.5 0.012 15.4 0.3 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) RHH_1 PF01402.16 gi|284176396|ref|YP_003406671.1| - 0.026 14.3 1.7 0.026 14.3 1.2 2.6 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family BLOC1_2 PF10046.4 gi|284176396|ref|YP_003406671.1| - 0.091 12.9 0.4 0.16 12.1 0.3 1.4 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF217 PF02697.9 gi|284176396|ref|YP_003406671.1| - 0.11 12.7 1.1 0.23 11.7 0.7 1.5 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 BBP1_C PF15272.1 gi|284176396|ref|YP_003406671.1| - 0.16 11.5 1.8 0.22 11.0 1.3 1.2 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal TMCO5 PF14992.1 gi|284176396|ref|YP_003406671.1| - 0.86 8.6 3.9 1.1 8.3 2.7 1.2 1 0 0 1 1 1 0 TMCO5 family DUF4404 PF14357.1 gi|284176396|ref|YP_003406671.1| - 1.3 9.4 3.9 2.9 8.3 0.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) Tropomyosin_1 PF12718.2 gi|284176396|ref|YP_003406671.1| - 1.4 8.8 6.2 2.3 8.0 4.3 1.5 1 1 0 1 1 1 0 Tropomyosin like Apolipoprotein PF01442.13 gi|284176398|ref|YP_003406673.1| - 1.6e-06 27.7 0.0 4.1e-06 26.4 0.0 1.6 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF883 PF05957.8 gi|284176398|ref|YP_003406673.1| - 2.7e-06 27.6 16.5 0.001 19.4 1.2 5.3 2 1 3 5 5 5 2 Bacterial protein of unknown function (DUF883) Phasin PF05597.6 gi|284176398|ref|YP_003406673.1| - 4.6e-06 26.4 19.9 0.055 13.2 1.3 4.3 1 1 3 4 4 4 4 Poly(hydroxyalcanoate) granule associated protein (phasin) ApoLp-III PF07464.6 gi|284176398|ref|YP_003406673.1| - 0.0033 17.4 14.2 0.048 13.6 8.4 2.8 1 1 1 2 2 2 1 Apolipophorin-III precursor (apoLp-III) Prominin PF05478.6 gi|284176398|ref|YP_003406673.1| - 0.056 10.9 4.4 0.75 7.2 0.1 2.0 1 1 1 2 2 2 0 Prominin Baculo_PEP_C PF04513.7 gi|284176398|ref|YP_003406673.1| - 0.068 12.9 2.0 1.2 8.9 0.4 2.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus REF PF05755.7 gi|284176398|ref|YP_003406673.1| - 0.098 12.3 9.1 0.31 10.7 2.7 2.4 1 1 1 2 2 2 0 Rubber elongation factor protein (REF) DUF445 PF04286.7 gi|284176398|ref|YP_003406673.1| - 0.12 11.8 0.8 0.21 11.1 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Mitofilin PF09731.4 gi|284176398|ref|YP_003406673.1| - 0.21 10.2 8.5 0.43 9.1 5.9 1.4 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Tweety PF04906.8 gi|284176398|ref|YP_003406673.1| - 1 7.6 0.5 1.6 7.0 0.4 1.2 1 0 0 1 1 1 0 Tweety MT0933_antitox PF14013.1 gi|284176398|ref|YP_003406673.1| - 2.5 8.2 67.4 0.022 14.8 18.9 5.5 3 1 0 4 4 2 0 MT0933-like antitoxin protein ISG65-75 PF11727.3 gi|284176398|ref|YP_003406673.1| - 5.2 6.0 20.4 12 4.8 8.9 2.4 1 1 1 2 2 2 0 Invariant surface glycoprotein Tape_meas_lam_C PF09718.5 gi|284176398|ref|YP_003406673.1| - 5.2 7.0 12.1 5.6 6.9 0.5 4.2 2 1 3 5 5 5 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) MttA_Hcf106 PF02416.11 gi|284176399|ref|YP_003406674.1| - 4.4e-08 32.0 1.4 4.4e-08 32.0 1.0 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family BNR PF02012.15 gi|284176400|ref|YP_003406675.1| - 0.0079 15.8 0.6 0.0079 15.8 0.4 4.0 3 0 0 3 3 3 2 BNR/Asp-box repeat TAT_signal PF10518.4 gi|284176400|ref|YP_003406675.1| - 0.024 14.6 2.1 0.046 13.7 1.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|284176400|ref|YP_003406675.1| - 0.19 10.9 1.6 0.34 10.1 1.1 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal D5_N PF08706.6 gi|284176401|ref|YP_003406676.1| - 1.9e-14 53.9 1.1 1.7e-13 50.9 0.0 2.8 2 0 0 2 2 2 1 D5 N terminal like Pox_D5 PF03288.11 gi|284176401|ref|YP_003406676.1| - 3.5e-06 27.1 0.9 8.4e-06 25.9 0.2 2.0 2 0 0 2 2 2 1 Poxvirus D5 protein-like RFX_DNA_binding PF02257.10 gi|284176401|ref|YP_003406676.1| - 0.027 14.6 0.0 0.056 13.5 0.0 1.5 1 0 0 1 1 1 0 RFX DNA-binding domain Exo_endo_phos_2 PF14529.1 gi|284176401|ref|YP_003406676.1| - 0.045 13.3 0.0 0.13 11.8 0.0 1.8 1 0 0 1 1 1 0 Endonuclease-reverse transcriptase Fe_dep_repress PF01325.14 gi|284176403|ref|YP_003406678.1| - 0.00044 20.1 0.0 0.0006 19.7 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DsrD PF08679.6 gi|284176403|ref|YP_003406678.1| - 0.06 13.3 0.0 0.064 13.2 0.0 1.2 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) HrcA_DNA-bdg PF03444.10 gi|284176403|ref|YP_003406678.1| - 0.076 12.4 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF2460 PF09343.5 gi|284176404|ref|YP_003406679.1| - 0.11 11.7 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 2217 (DUF2460) DUF4341 PF14241.1 gi|284176407|ref|YP_003406682.1| - 0.049 13.3 1.0 0.076 12.7 0.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4341) TF_Zn_Ribbon PF08271.7 gi|284176408|ref|YP_003406683.1| - 0.012 14.9 0.4 2.3 7.6 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|284176408|ref|YP_003406683.1| - 0.013 15.3 0.5 0.024 14.4 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-HIT PF04438.11 gi|284176408|ref|YP_003406683.1| - 0.016 14.8 2.0 0.05 13.2 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-ribbon_3 PF13248.1 gi|284176408|ref|YP_003406683.1| - 0.019 14.1 1.6 1.8 7.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|284176408|ref|YP_003406683.1| - 0.028 14.2 0.4 0.07 12.9 0.3 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284176408|ref|YP_003406683.1| - 0.064 13.2 1.6 12 5.9 0.2 2.3 1 1 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|284176408|ref|YP_003406683.1| - 0.068 12.6 0.9 4.8 6.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|284176408|ref|YP_003406683.1| - 0.086 12.5 0.5 0.15 11.7 0.0 1.6 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-IS66 PF13005.2 gi|284176408|ref|YP_003406683.1| - 6.9 6.7 8.2 18 5.4 0.1 2.7 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 Mating_N PF12731.2 gi|284176411|ref|YP_003406686.1| - 0.013 15.3 0.9 0.11 12.3 0.1 2.1 2 0 0 2 2 2 0 Mating-type protein beta 1 Phage_int_SAM_1 PF02899.12 gi|284176411|ref|YP_003406686.1| - 0.11 12.6 0.2 1.4 9.1 0.0 2.2 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.17 gi|284176412|ref|YP_003406687.1| - 4.7e-26 91.5 0.1 6e-26 91.1 0.1 1.0 1 0 0 1 1 1 1 Phage integrase family