# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SIS PF01380.17 gi|284176135|ref|YP_003406412.1| - 5.5e-50 168.3 0.1 1.2e-24 86.3 0.4 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|284176135|ref|YP_003406412.1| - 7.5e-25 87.4 0.1 4.4e-24 84.9 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|284176135|ref|YP_003406412.1| - 3.1e-23 82.0 0.0 2.8e-17 62.4 0.0 2.6 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|284176135|ref|YP_003406412.1| - 7.9e-19 67.6 0.0 1.9e-18 66.4 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|284176135|ref|YP_003406412.1| - 1.7e-07 30.2 0.0 2.8e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|284176135|ref|YP_003406412.1| - 0.05 13.3 0.2 1.6 8.4 0.0 2.5 2 0 0 2 2 2 0 SIS domain NTP_transferase PF00483.18 gi|284176136|ref|YP_003406413.1| - 2.7e-37 128.4 0.0 4.2e-37 127.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|284176136|ref|YP_003406413.1| - 5.4e-16 59.0 1.0 6.2e-16 58.8 0.1 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|284176136|ref|YP_003406413.1| - 2.5e-10 39.3 12.0 0.022 14.2 0.4 4.8 2 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|284176136|ref|YP_003406413.1| - 1.3e-05 24.8 0.0 2.1e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glyco_tranf_2_3 PF13641.1 gi|284176136|ref|YP_003406413.1| - 0.0094 15.7 1.1 0.018 14.8 0.8 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Zn-ribbon_8 PF09723.5 gi|284176137|ref|YP_003406414.1| - 0.0022 17.9 0.4 0.46 10.4 0.0 2.2 2 0 0 2 2 2 2 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|284176137|ref|YP_003406414.1| - 0.04 13.6 1.0 0.14 11.8 0.7 1.9 1 1 0 1 1 1 0 Nudix N-terminal Arv1 PF04161.8 gi|284176137|ref|YP_003406414.1| - 0.051 13.4 0.2 0.06 13.2 0.2 1.1 1 0 0 1 1 1 0 Arv1-like family DZR PF12773.2 gi|284176137|ref|YP_003406414.1| - 0.066 13.0 2.1 0.14 11.9 1.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon RecR PF02132.10 gi|284176137|ref|YP_003406414.1| - 0.11 11.9 1.9 0.55 9.7 0.0 2.0 1 1 1 2 2 2 0 RecR protein PolC_DP2 PF03833.8 gi|284176137|ref|YP_003406414.1| - 0.12 10.0 0.4 0.12 10.0 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-LITAF-like PF10601.4 gi|284176137|ref|YP_003406414.1| - 0.12 12.2 4.6 0.35 10.7 0.2 2.1 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain zf-RING_3 PF14369.1 gi|284176137|ref|YP_003406414.1| - 0.14 12.1 1.0 4.1 7.4 0.1 2.2 2 0 0 2 2 2 0 zinc-finger RNHCP PF12647.2 gi|284176137|ref|YP_003406414.1| - 0.17 11.7 1.5 0.36 10.6 1.0 1.5 1 1 0 1 1 1 0 RNHCP domain Prok-RING_1 PF14446.1 gi|284176137|ref|YP_003406414.1| - 0.55 9.9 3.8 5.7 6.7 2.7 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|284176137|ref|YP_003406414.1| - 0.61 9.9 3.4 5 7.0 2.4 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain MarR PF01047.17 gi|284176138|ref|YP_003406415.1| - 4.7e-06 26.2 0.0 6.3e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|284176138|ref|YP_003406415.1| - 6.9e-06 25.6 0.0 7.9e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|284176138|ref|YP_003406415.1| - 4.2e-05 23.0 0.0 4.9e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|284176138|ref|YP_003406415.1| - 8.3e-05 22.2 0.1 0.0001 21.9 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|284176138|ref|YP_003406415.1| - 0.00014 21.1 0.0 0.00021 20.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|284176138|ref|YP_003406415.1| - 0.00019 21.1 0.1 0.00021 20.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|284176138|ref|YP_003406415.1| - 0.00069 19.0 0.0 0.00092 18.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|284176138|ref|YP_003406415.1| - 0.0012 18.6 0.0 0.0013 18.4 0.0 1.1 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|284176138|ref|YP_003406415.1| - 0.0035 17.6 0.1 0.005 17.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|284176138|ref|YP_003406415.1| - 0.0037 17.3 0.0 0.005 16.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.15 gi|284176138|ref|YP_003406415.1| - 0.0088 15.6 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|284176138|ref|YP_003406415.1| - 0.0092 16.0 0.0 0.017 15.2 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain RNA_pol_Rpc34 PF05158.7 gi|284176138|ref|YP_003406415.1| - 0.019 14.1 0.0 0.021 14.0 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_12 PF08461.5 gi|284176138|ref|YP_003406415.1| - 0.025 14.3 0.1 0.039 13.6 0.0 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_CodY PF08222.6 gi|284176138|ref|YP_003406415.1| - 0.043 13.1 0.0 0.059 12.7 0.0 1.2 1 0 0 1 1 1 0 CodY helix-turn-helix domain DUF742 PF05331.6 gi|284176138|ref|YP_003406415.1| - 0.046 13.3 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) PaaX PF07848.7 gi|284176138|ref|YP_003406415.1| - 0.11 12.5 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_DeoR PF08220.7 gi|284176138|ref|YP_003406415.1| - 0.11 12.0 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Acetyltransf_6 PF13480.1 gi|284176139|ref|YP_003406416.1| - 9.3e-19 67.7 0.1 9.3e-19 67.7 0.1 1.8 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|284176139|ref|YP_003406416.1| - 5.6e-08 31.8 0.0 1.9e-05 23.5 0.0 2.1 2 0 0 2 2 2 2 FemAB family Phosphodiest PF01663.17 gi|284176140|ref|YP_003406417.1| - 9.4e-37 127.1 0.0 8.8e-36 123.9 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|284176140|ref|YP_003406417.1| - 0.049 12.9 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 Metalloenzyme superfamily DegT_DnrJ_EryC1 PF01041.12 gi|284176141|ref|YP_003406418.1| - 9.6e-18 64.3 0.0 7.5e-17 61.3 0.0 1.9 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family AAA_10 PF12846.2 gi|284176142|ref|YP_003406419.1| - 2.9e-16 59.7 11.8 4.5e-09 36.1 0.0 3.2 1 1 1 3 3 2 2 AAA-like domain DUF87 PF01935.12 gi|284176142|ref|YP_003406419.1| - 8.8e-12 45.3 0.0 8.8e-12 45.3 0.0 3.0 2 1 0 2 2 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|284176142|ref|YP_003406419.1| - 5.3e-06 25.0 1.5 0.0002 19.8 0.0 2.8 3 0 0 3 3 3 1 Bacterial protein of unknown function (DUF853) ATG16 PF08614.6 gi|284176142|ref|YP_003406419.1| - 0.00023 21.0 26.6 0.059 13.1 7.2 2.6 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) MAD PF05557.8 gi|284176142|ref|YP_003406419.1| - 0.00065 17.9 25.2 0.034 12.2 17.5 2.1 1 1 0 1 1 1 1 Mitotic checkpoint protein CENP-F_leu_zip PF10473.4 gi|284176142|ref|YP_003406419.1| - 0.0011 18.8 32.9 0.033 14.0 22.8 2.6 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_17 PF13207.1 gi|284176142|ref|YP_003406419.1| - 0.0011 19.7 0.0 0.0011 19.7 0.0 3.3 2 1 0 2 2 1 1 AAA domain Cast PF10174.4 gi|284176142|ref|YP_003406419.1| - 0.0016 16.5 26.2 0.0027 15.8 18.1 1.3 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone IncA PF04156.9 gi|284176142|ref|YP_003406419.1| - 0.0021 17.6 33.0 0.1 12.1 11.6 2.4 1 1 1 2 2 2 2 IncA protein FH2 PF02181.18 gi|284176142|ref|YP_003406419.1| - 0.0025 16.7 5.7 0.41 9.4 0.1 2.2 2 0 0 2 2 2 2 Formin Homology 2 Domain SlyX PF04102.7 gi|284176142|ref|YP_003406419.1| - 0.0036 17.6 19.3 0.14 12.5 4.8 2.8 2 0 0 2 2 2 2 SlyX FliD_N PF02465.13 gi|284176142|ref|YP_003406419.1| - 0.0043 17.3 0.1 5.5 7.4 0.2 2.5 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus APS_kinase PF01583.15 gi|284176142|ref|YP_003406419.1| - 0.0049 16.5 0.0 0.022 14.4 0.0 2.1 1 0 0 1 1 1 1 Adenylylsulphate kinase CbiA PF01656.18 gi|284176142|ref|YP_003406419.1| - 0.0064 15.9 0.0 0.0064 15.9 0.0 1.9 2 1 0 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA PF00004.24 gi|284176142|ref|YP_003406419.1| - 0.011 15.9 0.4 0.15 12.2 0.0 2.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Med9 PF07544.8 gi|284176142|ref|YP_003406419.1| - 0.016 14.8 3.3 0.016 14.8 2.3 3.1 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Prefoldin_2 PF01920.15 gi|284176142|ref|YP_003406419.1| - 0.02 14.6 26.0 0.12 12.1 5.8 3.7 2 1 1 3 3 3 0 Prefoldin subunit AAA_22 PF13401.1 gi|284176142|ref|YP_003406419.1| - 0.023 14.8 1.0 0.058 13.5 0.0 2.2 2 2 0 2 2 1 0 AAA domain MobB PF03205.9 gi|284176142|ref|YP_003406419.1| - 0.03 14.0 0.0 0.079 12.6 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.1 gi|284176142|ref|YP_003406419.1| - 0.031 12.7 16.5 0.6 8.4 11.1 2.2 1 1 0 1 1 1 0 AAA domain ERM PF00769.14 gi|284176142|ref|YP_003406419.1| - 0.034 13.6 34.6 0.12 11.8 24.1 1.8 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DivIVA PF05103.8 gi|284176142|ref|YP_003406419.1| - 0.05 13.6 26.3 0.16 12.0 3.8 3.6 3 1 0 3 3 2 0 DivIVA protein AAA_19 PF13245.1 gi|284176142|ref|YP_003406419.1| - 0.069 12.9 1.0 0.19 11.4 0.0 2.2 3 0 0 3 3 1 0 Part of AAA domain AAA_18 PF13238.1 gi|284176142|ref|YP_003406419.1| - 0.076 13.3 0.3 0.076 13.3 0.2 4.2 2 2 1 3 3 2 0 AAA domain DUF4201 PF13870.1 gi|284176142|ref|YP_003406419.1| - 0.079 12.3 16.4 1.1 8.7 3.9 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) GAS PF13851.1 gi|284176142|ref|YP_003406419.1| - 0.095 11.8 23.0 0.59 9.3 6.5 2.5 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding FlaC_arch PF05377.6 gi|284176142|ref|YP_003406419.1| - 0.1 12.5 16.6 0.49 10.3 1.2 3.6 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) TBPIP PF07106.8 gi|284176142|ref|YP_003406419.1| - 0.11 12.0 19.0 0.044 13.3 4.4 2.5 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TPR_MLP1_2 PF07926.7 gi|284176142|ref|YP_003406419.1| - 0.25 11.0 19.6 0.7 9.6 13.6 1.8 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein TrmB PF01978.14 gi|284176142|ref|YP_003406419.1| - 0.32 10.7 0.1 0.32 10.7 0.0 2.8 3 0 0 3 3 2 0 Sugar-specific transcriptional regulator TrmB ABC_tran PF00005.22 gi|284176142|ref|YP_003406419.1| - 0.56 10.4 4.0 4.3 7.6 0.0 3.3 2 1 0 2 2 2 0 ABC transporter FtsK_SpoIIIE PF01580.13 gi|284176142|ref|YP_003406419.1| - 0.58 9.5 7.6 2.1 7.7 0.0 3.2 4 0 0 4 4 4 0 FtsK/SpoIIIE family HALZ PF02183.13 gi|284176142|ref|YP_003406419.1| - 0.62 9.8 8.7 1.5 8.6 0.4 3.5 3 0 0 3 3 3 0 Homeobox associated leucine zipper FemAB PF02388.11 gi|284176142|ref|YP_003406419.1| - 0.74 8.4 9.4 2 7.0 1.1 2.3 1 1 1 2 2 2 0 FemAB family Reo_sigmaC PF04582.7 gi|284176142|ref|YP_003406419.1| - 0.76 8.8 4.1 2.5 7.1 0.1 1.9 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Laminin_II PF06009.7 gi|284176142|ref|YP_003406419.1| - 0.78 9.4 16.7 0.64 9.7 1.4 2.8 2 1 1 3 3 2 0 Laminin Domain II Hemagglutinin PF00509.13 gi|284176142|ref|YP_003406419.1| - 1 7.4 3.5 1.7 6.7 2.4 1.3 1 0 0 1 1 1 0 Haemagglutinin Prefoldin PF02996.12 gi|284176142|ref|YP_003406419.1| - 1.1 8.9 16.5 3.2 7.4 2.0 3.4 2 1 1 3 3 3 0 Prefoldin subunit CASP_C PF08172.7 gi|284176142|ref|YP_003406419.1| - 1.1 8.2 20.4 5 6.0 13.0 2.5 1 1 0 1 1 1 0 CASP C terminal Phage_GP20 PF06810.6 gi|284176142|ref|YP_003406419.1| - 1.3 8.5 19.8 0.15 11.5 2.5 3.1 2 1 1 3 3 2 0 Phage minor structural protein GP20 Syntaxin PF00804.20 gi|284176142|ref|YP_003406419.1| - 1.4 9.1 11.1 0.44 10.7 1.3 2.9 2 0 0 2 2 2 0 Syntaxin Fib_alpha PF08702.5 gi|284176142|ref|YP_003406419.1| - 1.6 8.8 7.1 6.9 6.7 5.0 2.0 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DNA_topoisoIV PF00521.15 gi|284176142|ref|YP_003406419.1| - 2.1 7.1 7.7 3.3 6.4 5.4 1.2 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A Spc7 PF08317.6 gi|284176142|ref|YP_003406419.1| - 2.4 6.7 20.7 10 4.6 14.3 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF342 PF03961.8 gi|284176142|ref|YP_003406419.1| - 2.6 6.3 13.3 1.8 6.9 1.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Atg14 PF10186.4 gi|284176142|ref|YP_003406419.1| - 2.8 6.8 21.2 5.3 5.9 5.4 2.4 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Allexi_40kDa PF05549.6 gi|284176142|ref|YP_003406419.1| - 3 7.0 9.3 0.57 9.4 0.9 2.2 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF4446 PF14584.1 gi|284176142|ref|YP_003406419.1| - 3 7.6 13.8 3 7.6 1.8 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) Herpes_UL6 PF01763.11 gi|284176142|ref|YP_003406419.1| - 3 5.8 12.4 1.1 7.3 1.3 2.2 1 1 1 2 2 2 0 Herpesvirus UL6 like Bacillus_HBL PF05791.6 gi|284176142|ref|YP_003406419.1| - 4.6 6.5 7.1 19 4.5 1.3 2.4 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF3450 PF11932.3 gi|284176142|ref|YP_003406419.1| - 5.4 6.2 15.2 10 5.2 3.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) ArsA_ATPase PF02374.10 gi|284176142|ref|YP_003406419.1| - 6.2 5.7 7.6 0.76 8.7 0.1 2.7 3 0 0 3 3 3 0 Anion-transporting ATPase DUF972 PF06156.8 gi|284176142|ref|YP_003406419.1| - 6.9 7.0 22.0 1.4 9.3 5.5 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Med4 PF10018.4 gi|284176142|ref|YP_003406419.1| - 6.9 6.0 27.7 0.22 10.9 4.0 3.0 3 0 0 3 3 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Cep57_MT_bd PF06657.8 gi|284176142|ref|YP_003406419.1| - 7.1 6.6 16.0 8.4 6.4 0.8 3.6 3 1 0 3 3 2 0 Centrosome microtubule-binding domain of Cep57 DUF1664 PF07889.7 gi|284176142|ref|YP_003406419.1| - 7.1 6.4 11.8 12 5.7 1.1 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|284176142|ref|YP_003406419.1| - 7.2 4.3 19.3 5.2 4.8 6.1 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DivIC PF04977.10 gi|284176142|ref|YP_003406419.1| - 8.3 5.9 27.1 3.9 7.0 1.5 3.8 3 1 1 4 4 3 0 Septum formation initiator DUF4140 PF13600.1 gi|284176142|ref|YP_003406419.1| - 9.2 6.7 24.7 4.9 7.6 3.0 3.9 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) Baculo_PEP_C PF04513.7 gi|284176142|ref|YP_003406419.1| - 9.7 6.0 7.6 52 3.6 0.2 2.8 2 1 1 3 3 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF641 PF04859.7 gi|284176142|ref|YP_003406419.1| - 9.8 5.9 14.3 10 5.8 2.2 2.9 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DUF241 PF03087.9 gi|284176142|ref|YP_003406419.1| - 10 5.5 19.0 0.079 12.4 0.6 2.9 3 1 1 4 4 2 0 Arabidopsis protein of unknown function CbiA PF01656.18 gi|284176143|ref|YP_003406420.1| - 6e-26 91.0 0.0 7.9e-26 90.6 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|284176143|ref|YP_003406420.1| - 9e-10 38.6 0.1 5.7e-09 36.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|284176143|ref|YP_003406420.1| - 1.7e-07 30.5 0.0 6.6e-06 25.3 0.0 2.3 1 1 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|284176143|ref|YP_003406420.1| - 2.1e-06 27.0 0.7 0.0013 17.8 0.1 3.1 3 0 0 3 3 3 1 ATPase MipZ AAA_17 PF13207.1 gi|284176143|ref|YP_003406420.1| - 0.0024 18.6 1.0 0.0055 17.5 0.1 2.0 2 2 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|284176143|ref|YP_003406420.1| - 0.013 15.7 0.1 0.052 13.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain YhjQ PF06564.7 gi|284176143|ref|YP_003406420.1| - 0.016 14.5 0.0 0.046 13.0 0.0 1.7 1 1 0 1 1 1 0 YhjQ protein Fer4_NifH PF00142.13 gi|284176143|ref|YP_003406420.1| - 0.026 13.6 0.0 0.049 12.8 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MobB PF03205.9 gi|284176143|ref|YP_003406420.1| - 0.051 13.2 0.0 0.097 12.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|284176143|ref|YP_003406420.1| - 0.061 12.7 0.0 0.19 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|284176143|ref|YP_003406420.1| - 0.064 12.6 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain VirC1 PF07015.6 gi|284176143|ref|YP_003406420.1| - 0.09 11.8 0.0 0.19 10.8 0.0 1.5 2 0 0 2 2 2 0 VirC1 protein DUF773 PF05600.7 gi|284176144|ref|YP_003406421.1| - 1.7 7.3 4.7 2 7.1 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF773) ResIII PF04851.10 gi|284176145|ref|YP_003406422.1| - 6.1e-13 48.9 0.0 2.4e-12 47.0 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|284176145|ref|YP_003406422.1| - 1.8e-12 46.9 0.0 4.3e-12 45.7 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|284176145|ref|YP_003406422.1| - 2.4e-12 46.2 0.0 3.3e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DEAD PF00270.24 gi|284176145|ref|YP_003406422.1| - 8.6e-08 31.8 0.0 2.8e-07 30.1 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|284176145|ref|YP_003406422.1| - 0.00021 20.9 0.3 0.0009 18.9 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_25 PF13481.1 gi|284176145|ref|YP_003406422.1| - 0.0012 18.2 0.0 0.0074 15.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|284176145|ref|YP_003406422.1| - 0.003 17.6 0.1 0.065 13.3 0.0 3.2 3 2 1 4 4 4 1 AAA domain AAA_33 PF13671.1 gi|284176145|ref|YP_003406422.1| - 0.0045 16.8 0.9 0.08 12.8 0.0 3.2 3 1 0 3 3 3 1 AAA domain DUF2075 PF09848.4 gi|284176145|ref|YP_003406422.1| - 0.031 13.2 0.1 4.9 6.0 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.24 gi|284176145|ref|YP_003406422.1| - 0.16 12.1 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SF PF00482.18 gi|284176146|ref|YP_003406423.1| - 0.044 13.7 9.5 0.15 11.9 0.2 4.2 4 0 0 4 4 4 0 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|284176147|ref|YP_003406424.1| - 9.5e-35 119.8 0.0 1.5e-34 119.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|284176147|ref|YP_003406424.1| - 0.00046 20.4 0.0 0.00079 19.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter FtsK_SpoIIIE PF01580.13 gi|284176147|ref|YP_003406424.1| - 0.027 13.9 0.0 0.049 13.0 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|284176147|ref|YP_003406424.1| - 0.032 13.3 0.0 0.059 12.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_29 PF13555.1 gi|284176147|ref|YP_003406424.1| - 0.042 13.3 0.0 0.098 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|284176147|ref|YP_003406424.1| - 0.053 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|284176147|ref|YP_003406424.1| - 0.078 13.1 0.1 0.27 11.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|284176147|ref|YP_003406424.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|284176147|ref|YP_003406424.1| - 0.13 11.7 0.1 0.27 10.6 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF3244 PF11589.3 gi|284176149|ref|YP_003406426.1| - 0.071 12.8 0.3 0.16 11.6 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3244) DUF2964 PF11177.3 gi|284176149|ref|YP_003406426.1| - 0.12 12.2 2.0 0.21 11.5 1.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2964) AAA PF00004.24 gi|284176150|ref|YP_003406427.1| - 3.2e-96 318.5 0.0 3.4e-47 159.9 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|284176150|ref|YP_003406427.1| - 3.6e-21 74.9 1.5 1e-20 73.4 0.4 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|284176150|ref|YP_003406427.1| - 3.8e-15 55.5 0.0 3.2e-07 29.6 0.0 3.3 3 1 1 4 4 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|284176150|ref|YP_003406427.1| - 4.9e-15 55.8 0.0 7.4e-07 29.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|284176150|ref|YP_003406427.1| - 1.7e-14 54.2 0.2 1e-05 25.5 0.0 3.5 2 2 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|284176150|ref|YP_003406427.1| - 1.4e-13 50.9 0.0 3.4e-06 26.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|284176150|ref|YP_003406427.1| - 3.3e-13 49.5 0.4 8.7e-05 22.2 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|284176150|ref|YP_003406427.1| - 3.5e-13 50.4 0.2 4.9e-05 24.1 0.0 3.1 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|284176150|ref|YP_003406427.1| - 6.6e-12 45.6 0.2 0.00084 19.4 0.0 4.0 2 2 1 3 3 3 2 AAA domain AAA_14 PF13173.1 gi|284176150|ref|YP_003406427.1| - 3e-10 40.0 0.0 0.00077 19.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|284176150|ref|YP_003406427.1| - 5.4e-10 38.8 0.1 0.0021 17.7 0.0 3.0 2 0 0 2 2 2 2 Part of AAA domain AAA_28 PF13521.1 gi|284176150|ref|YP_003406427.1| - 1.2e-09 38.3 0.1 0.002 18.0 0.0 3.2 3 0 0 3 3 3 2 AAA domain Zeta_toxin PF06414.7 gi|284176150|ref|YP_003406427.1| - 3e-09 36.2 0.0 0.00016 20.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin TIP49 PF06068.8 gi|284176150|ref|YP_003406427.1| - 5.7e-09 35.1 0.0 0.0018 17.0 0.0 2.6 2 0 0 2 2 2 2 TIP49 C-terminus AAA_25 PF13481.1 gi|284176150|ref|YP_003406427.1| - 6.3e-09 35.5 5.3 0.58 9.5 0.1 4.7 2 2 2 4 4 4 3 AAA domain AAA_18 PF13238.1 gi|284176150|ref|YP_003406427.1| - 2e-08 34.5 0.0 0.015 15.5 0.0 3.3 3 0 0 3 3 3 2 AAA domain IstB_IS21 PF01695.12 gi|284176150|ref|YP_003406427.1| - 6.9e-08 32.1 0.0 0.0083 15.5 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_3 PF07726.6 gi|284176150|ref|YP_003406427.1| - 1.6e-07 30.9 0.1 0.015 14.9 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|284176150|ref|YP_003406427.1| - 3.2e-07 30.4 0.0 0.017 15.1 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|284176150|ref|YP_003406427.1| - 8.9e-07 29.0 0.0 0.033 14.3 0.0 2.4 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|284176150|ref|YP_003406427.1| - 1.3e-06 27.7 0.4 0.048 12.8 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|284176150|ref|YP_003406427.1| - 3e-06 27.5 0.0 0.028 14.7 0.0 2.6 2 0 0 2 2 2 2 ABC transporter Sigma54_activat PF00158.21 gi|284176150|ref|YP_003406427.1| - 8.5e-06 25.3 0.0 0.22 10.9 0.0 3.1 3 1 0 3 3 3 2 Sigma-54 interaction domain CDC48_2 PF02933.12 gi|284176150|ref|YP_003406427.1| - 9.3e-06 25.1 0.5 9.3e-06 25.1 0.3 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 NACHT PF05729.7 gi|284176150|ref|YP_003406427.1| - 2.4e-05 24.0 0.2 0.51 9.9 0.0 4.0 4 0 0 4 4 4 1 NACHT domain PhoH PF02562.11 gi|284176150|ref|YP_003406427.1| - 4.4e-05 22.8 0.0 0.29 10.3 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein DUF2075 PF09848.4 gi|284176150|ref|YP_003406427.1| - 6.4e-05 22.0 0.0 0.2 10.5 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|284176150|ref|YP_003406427.1| - 8e-05 22.3 0.0 0.26 10.8 0.0 2.7 3 0 0 3 3 2 2 AAA domain Arch_ATPase PF01637.13 gi|284176150|ref|YP_003406427.1| - 8.2e-05 22.4 0.0 0.52 9.9 0.0 3.7 2 2 0 2 2 2 1 Archaeal ATPase Parvo_NS1 PF01057.12 gi|284176150|ref|YP_003406427.1| - 0.00012 21.0 0.0 0.15 10.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_11 PF13086.1 gi|284176150|ref|YP_003406427.1| - 0.00013 21.6 0.0 0.41 10.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.8 gi|284176150|ref|YP_003406427.1| - 0.00015 20.7 0.0 0.29 10.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|284176150|ref|YP_003406427.1| - 0.00015 20.6 0.0 0.087 11.6 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain UPF0079 PF02367.12 gi|284176150|ref|YP_003406427.1| - 0.0004 20.0 0.0 0.86 9.2 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|284176150|ref|YP_003406427.1| - 0.00077 19.0 0.0 0.97 8.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|284176150|ref|YP_003406427.1| - 0.0012 18.0 0.0 1.7 7.7 0.0 2.8 3 0 0 3 3 2 2 KaiC SKI PF01202.17 gi|284176150|ref|YP_003406427.1| - 0.0017 18.2 0.0 0.9 9.3 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase Cytidylate_kin2 PF13189.1 gi|284176150|ref|YP_003406427.1| - 0.0024 17.8 0.0 2.6 7.8 0.0 2.3 2 0 0 2 2 2 1 Cytidylate kinase-like family NTPase_1 PF03266.10 gi|284176150|ref|YP_003406427.1| - 0.011 15.4 0.1 7.9 6.1 0.0 3.2 2 2 2 4 4 3 0 NTPase ResIII PF04851.10 gi|284176150|ref|YP_003406427.1| - 0.017 14.9 0.0 1.7 8.4 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit CPT PF07931.7 gi|284176150|ref|YP_003406427.1| - 0.027 14.0 0.0 4.7 6.8 0.0 3.0 3 0 0 3 3 2 0 Chloramphenicol phosphotransferase-like protein AFG1_ATPase PF03969.11 gi|284176150|ref|YP_003406427.1| - 0.029 13.2 0.0 1.3 7.7 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase Torsin PF06309.6 gi|284176150|ref|YP_003406427.1| - 0.038 13.8 0.0 3.3 7.5 0.0 2.4 2 0 0 2 2 2 0 Torsin Viral_helicase1 PF01443.13 gi|284176150|ref|YP_003406427.1| - 0.07 12.6 0.0 4.6 6.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF4242 PF14026.1 gi|284176150|ref|YP_003406427.1| - 0.081 13.0 0.1 36 4.5 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF4242) KTI12 PF08433.5 gi|284176150|ref|YP_003406427.1| - 0.11 11.6 0.0 14 4.7 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DAP3 PF10236.4 gi|284176150|ref|YP_003406427.1| - 0.15 10.9 0.0 2.2 7.1 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Bac_DnaA PF00308.13 gi|284176150|ref|YP_003406427.1| - 0.24 11.0 0.0 6.6 6.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial dnaA protein HTH_10 PF04967.7 gi|284176151|ref|YP_003406428.1| - 5.6e-14 51.4 0.0 8.7e-14 50.8 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|284176151|ref|YP_003406428.1| - 0.0013 18.2 0.5 0.0032 16.9 0.3 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284176151|ref|YP_003406428.1| - 0.0024 17.1 0.1 0.0039 16.4 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|284176151|ref|YP_003406428.1| - 0.007 15.7 0.2 0.016 14.5 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|284176151|ref|YP_003406428.1| - 0.0082 16.0 0.0 0.024 14.5 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|284176151|ref|YP_003406428.1| - 0.029 14.0 0.1 0.098 12.3 0.0 1.9 2 0 0 2 2 2 0 MarR family Ribonuc_red_sm PF00268.16 gi|284176152|ref|YP_003406429.1| - 0.00044 19.3 0.0 0.0027 16.7 0.0 1.9 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain KIP1 PF07765.7 gi|284176152|ref|YP_003406429.1| - 0.13 12.1 0.6 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 KIP1-like protein SHOCT PF09851.4 gi|284176153|ref|YP_003406430.1| - 7.7e-07 28.3 2.5 1.7e-06 27.3 1.7 1.6 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.7 gi|284176153|ref|YP_003406430.1| - 0.0036 17.0 1.3 0.0075 16.0 0.8 1.6 1 1 0 1 1 1 1 Gas vesicle protein G DUF4131 PF13567.1 gi|284176153|ref|YP_003406430.1| - 0.017 14.5 0.6 0.027 13.8 0.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF1206 PF06724.6 gi|284176153|ref|YP_003406430.1| - 2.5 7.9 14.2 4.9 6.9 9.8 1.4 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1206) zf-C2H2_3 PF13878.1 gi|284176154|ref|YP_003406431.1| - 0.0055 16.2 2.0 0.007 15.9 1.4 1.3 1 1 0 1 1 1 1 zinc-finger of acetyl-transferase ESCO RNHCP PF12647.2 gi|284176154|ref|YP_003406431.1| - 0.011 15.4 0.2 0.013 15.2 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain SprT-like PF10263.4 gi|284176154|ref|YP_003406431.1| - 0.019 14.6 0.1 0.019 14.6 0.1 1.0 1 0 0 1 1 1 0 SprT-like family DUF4379 PF14311.1 gi|284176154|ref|YP_003406431.1| - 0.069 12.9 0.6 0.076 12.8 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) ADK_lid PF05191.9 gi|284176154|ref|YP_003406431.1| - 0.088 12.4 0.2 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 Adenylate kinase, active site lid YhfH PF14149.1 gi|284176154|ref|YP_003406431.1| - 0.18 11.6 1.2 0.27 11.0 0.8 1.2 1 0 0 1 1 1 0 YhfH-like protein FliT PF05400.8 gi|284176155|ref|YP_003406432.1| - 0.082 13.3 0.6 0.082 13.3 0.4 2.2 2 1 1 3 3 3 0 Flagellar protein FliT Sigma70_ner PF04546.8 gi|284176155|ref|YP_003406432.1| - 0.65 9.5 6.5 1.2 8.7 4.5 1.4 1 0 0 1 1 1 0 Sigma-70, non-essential region MIP-T3 PF10243.4 gi|284176157|ref|YP_003406434.1| - 2.4 6.5 34.0 2.7 6.3 23.6 1.0 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 DUF3544 PF12064.3 gi|284176159|ref|YP_003406436.1| - 0.53 10.0 3.1 0.75 9.5 2.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3544) GHMP_kinases_N PF00288.21 gi|284176160|ref|YP_003406437.1| - 7.7e-10 38.6 1.3 2.1e-09 37.3 0.9 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|284176160|ref|YP_003406437.1| - 0.085 13.0 0.0 0.25 11.5 0.0 1.8 1 0 0 1 1 1 0 GHMP kinases C terminal CM_2 PF01817.16 gi|284176161|ref|YP_003406438.1| - 2.2e-19 69.3 5.1 2.6e-19 69.0 3.5 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF853 PF05872.7 gi|284176161|ref|YP_003406438.1| - 0.036 12.4 0.2 0.043 12.1 0.2 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) NPFF PF15085.1 gi|284176161|ref|YP_003406438.1| - 0.13 12.5 0.5 0.21 11.8 0.2 1.5 1 1 0 1 1 1 0 Neuropeptide FF DUF4404 PF14357.1 gi|284176161|ref|YP_003406438.1| - 0.17 12.3 2.7 0.25 11.7 1.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) Methyltransf_11 PF08241.7 gi|284176162|ref|YP_003406439.1| - 6.1e-30 103.5 0.0 9.8e-30 102.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284176162|ref|YP_003406439.1| - 4.7e-27 94.4 0.0 5.9e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284176162|ref|YP_003406439.1| - 3e-23 82.1 0.0 5.3e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|284176162|ref|YP_003406439.1| - 9.2e-20 70.9 0.0 1.3e-19 70.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284176162|ref|YP_003406439.1| - 1.8e-19 69.9 0.0 2.8e-19 69.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284176162|ref|YP_003406439.1| - 1.1e-16 61.0 0.0 1.6e-16 60.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284176162|ref|YP_003406439.1| - 1.2e-16 60.7 0.5 3.9e-16 59.1 0.3 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284176162|ref|YP_003406439.1| - 4.8e-16 59.3 0.0 1.1e-15 58.1 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|284176162|ref|YP_003406439.1| - 2.9e-11 43.0 0.0 5.3e-11 42.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|284176162|ref|YP_003406439.1| - 2.9e-08 33.4 0.0 4.1e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|284176162|ref|YP_003406439.1| - 3.2e-07 29.9 0.0 4.6e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|284176162|ref|YP_003406439.1| - 7.2e-07 28.6 0.0 1.1e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|284176162|ref|YP_003406439.1| - 3.4e-06 26.2 0.0 5.1e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|284176162|ref|YP_003406439.1| - 1.6e-05 24.1 0.0 2.4e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FmrO PF07091.6 gi|284176162|ref|YP_003406439.1| - 5.4e-05 22.3 0.0 8.9e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_32 PF13679.1 gi|284176162|ref|YP_003406439.1| - 6.8e-05 22.5 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|284176162|ref|YP_003406439.1| - 0.00013 21.5 0.0 0.00033 20.2 0.0 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 DREV PF05219.7 gi|284176162|ref|YP_003406439.1| - 0.00014 20.8 0.0 0.0002 20.3 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.10 gi|284176162|ref|YP_003406439.1| - 0.0017 17.9 0.0 0.012 15.2 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase DOT1 PF08123.8 gi|284176162|ref|YP_003406439.1| - 0.0032 16.8 0.0 0.0046 16.2 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 FtsJ PF01728.14 gi|284176162|ref|YP_003406439.1| - 0.0074 16.2 0.1 0.014 15.4 0.1 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase CheR PF01739.13 gi|284176162|ref|YP_003406439.1| - 0.0081 15.4 0.0 0.87 8.8 0.0 2.3 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_29 PF03141.11 gi|284176162|ref|YP_003406439.1| - 0.019 13.3 0.0 0.025 12.9 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_9 PF08003.6 gi|284176162|ref|YP_003406439.1| - 0.035 12.7 0.0 0.048 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_3 PF01596.12 gi|284176162|ref|YP_003406439.1| - 0.05 12.6 0.0 0.076 12.0 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Fibrillarin PF01269.12 gi|284176162|ref|YP_003406439.1| - 0.078 11.8 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin Abhydrolase_6 PF12697.2 gi|284176163|ref|YP_003406440.1| - 1e-27 97.5 2.1 1.2e-27 97.2 1.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|284176163|ref|YP_003406440.1| - 2.7e-12 46.6 0.0 3.4e-11 43.0 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284176163|ref|YP_003406440.1| - 2.7e-08 33.6 0.0 2.1e-06 27.5 0.0 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|284176163|ref|YP_003406440.1| - 0.0015 18.8 0.1 0.0035 17.5 0.1 1.7 1 1 0 1 1 1 1 Thioesterase domain Hydrolase_4 PF12146.3 gi|284176163|ref|YP_003406440.1| - 0.058 13.2 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Putative lysophospholipase Ser_hydrolase PF06821.8 gi|284176163|ref|YP_003406440.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase SDF PF00375.13 gi|284176164|ref|YP_003406441.1| - 3.1e-112 375.1 42.0 3.5e-112 375.0 29.1 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Epimerase PF01370.16 gi|284176165|ref|YP_003406442.1| - 6.8e-40 136.9 0.0 9e-40 136.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284176165|ref|YP_003406442.1| - 3.5e-21 75.1 0.0 4.6e-21 74.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|284176165|ref|YP_003406442.1| - 3.4e-18 66.2 0.0 5.1e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|284176165|ref|YP_003406442.1| - 6.3e-17 61.3 0.0 8.8e-17 60.8 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|284176165|ref|YP_003406442.1| - 2e-10 40.0 0.0 9.5e-08 31.2 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|284176165|ref|YP_003406442.1| - 2.8e-07 30.5 0.0 5.7e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|284176165|ref|YP_003406442.1| - 4.1e-07 29.2 0.0 1.3e-06 27.5 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein CBS PF00571.23 gi|284176165|ref|YP_003406442.1| - 4.6e-07 29.5 0.2 4.6e-07 29.5 0.1 2.7 3 0 0 3 3 3 1 CBS domain NmrA PF05368.8 gi|284176165|ref|YP_003406442.1| - 1.6e-06 27.5 0.0 2.9e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|284176165|ref|YP_003406442.1| - 0.0031 17.4 0.2 0.023 14.6 0.0 2.3 2 0 0 2 2 2 1 TrkA-N domain KR PF08659.5 gi|284176165|ref|YP_003406442.1| - 0.077 12.6 0.4 0.48 10.0 0.3 2.1 1 1 0 1 1 1 0 KR domain Metallophos_2 PF12850.2 gi|284176165|ref|YP_003406442.1| - 0.088 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain UDPG_MGDP_dh_C PF03720.10 gi|284176165|ref|YP_003406442.1| - 0.09 12.9 0.0 0.29 11.2 0.0 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DegT_DnrJ_EryC1 PF01041.12 gi|284176166|ref|YP_003406443.1| - 1e-115 386.7 0.0 1.1e-115 386.5 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|284176166|ref|YP_003406443.1| - 5e-06 25.7 0.0 7.6e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|284176166|ref|YP_003406443.1| - 4.7e-05 22.6 0.1 0.00029 20.0 0.0 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.15 gi|284176166|ref|YP_003406443.1| - 0.006 15.1 0.0 0.0081 14.7 0.0 1.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Cys_Met_Meta_PP PF01053.15 gi|284176166|ref|YP_003406443.1| - 0.04 12.2 0.0 0.062 11.5 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Usp PF00582.21 gi|284176167|ref|YP_003406444.1| - 0.00052 20.2 6.1 0.00067 19.8 4.2 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF4255 PF14065.1 gi|284176167|ref|YP_003406444.1| - 0.12 11.7 0.2 0.18 11.2 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4255) DUF4137 PF13593.1 gi|284176168|ref|YP_003406445.1| - 0.037 13.1 1.8 0.041 12.9 1.2 1.0 1 0 0 1 1 1 0 SBF-like CPA transporter family (DUF4137) DUF2976 PF11190.3 gi|284176168|ref|YP_003406445.1| - 0.092 12.2 1.3 0.11 12.0 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) MerC PF03203.9 gi|284176168|ref|YP_003406445.1| - 0.46 10.8 3.0 2.2 8.6 1.9 1.9 1 1 0 1 1 1 0 MerC mercury resistance protein PilX_N PF14341.1 gi|284176168|ref|YP_003406445.1| - 1.5 8.5 6.5 0.82 9.3 1.1 2.3 2 0 0 2 2 2 0 PilX N-terminal HTH_20 PF12840.2 gi|284176169|ref|YP_003406446.1| - 8.2e-09 35.1 0.3 1.2e-08 34.6 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284176169|ref|YP_003406446.1| - 1e-05 24.8 0.0 1.5e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FUR PF01475.14 gi|284176169|ref|YP_003406446.1| - 0.00035 20.4 0.0 0.00046 20.0 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family MarR_2 PF12802.2 gi|284176169|ref|YP_003406446.1| - 0.00047 19.7 0.0 0.00063 19.3 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|284176169|ref|YP_003406446.1| - 0.00055 19.5 0.0 0.00082 19.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|284176169|ref|YP_003406446.1| - 0.0014 18.1 0.1 0.0021 17.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|284176169|ref|YP_003406446.1| - 0.008 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|284176169|ref|YP_003406446.1| - 0.011 15.2 0.1 0.018 14.5 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PadR PF03551.9 gi|284176169|ref|YP_003406446.1| - 0.012 15.3 0.0 0.016 15.0 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.17 gi|284176169|ref|YP_003406446.1| - 0.025 14.3 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|284176169|ref|YP_003406446.1| - 0.05 13.2 0.1 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|284176169|ref|YP_003406446.1| - 0.15 12.2 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Abhydrolase_6 PF12697.2 gi|284176170|ref|YP_003406447.1| - 2e-22 80.2 2.4 2.3e-22 79.9 1.7 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|284176170|ref|YP_003406447.1| - 2.2e-19 69.6 0.0 6.1e-19 68.2 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|284176170|ref|YP_003406447.1| - 1.2e-08 34.4 0.0 0.0027 16.9 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|284176170|ref|YP_003406447.1| - 4.5e-08 32.9 0.3 4.3e-07 29.7 0.2 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|284176170|ref|YP_003406447.1| - 8e-08 32.0 0.4 3.4e-07 30.0 0.3 2.0 2 0 0 2 2 2 1 Putative lysophospholipase Peptidase_S15 PF02129.13 gi|284176170|ref|YP_003406447.1| - 2.9e-06 26.9 0.0 4.4e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|284176170|ref|YP_003406447.1| - 0.0029 16.8 0.2 2.2 7.5 0.0 2.6 2 1 1 3 3 3 2 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|284176170|ref|YP_003406447.1| - 0.0034 16.9 0.1 0.0056 16.2 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S28 PF05577.7 gi|284176170|ref|YP_003406447.1| - 0.016 13.7 0.0 0.035 12.6 0.0 1.5 2 0 0 2 2 2 0 Serine carboxypeptidase S28 Abhydrolase_2 PF02230.11 gi|284176170|ref|YP_003406447.1| - 0.028 13.8 0.0 15 4.9 0.0 3.0 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase PGAP1 PF07819.8 gi|284176170|ref|YP_003406447.1| - 0.1 12.1 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein LRRNT_2 PF08263.7 gi|284176171|ref|YP_003406448.1| - 0.02 14.8 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Leucine rich repeat N-terminal domain A2L_zn_ribbon PF08792.5 gi|284176171|ref|YP_003406448.1| - 0.032 13.6 1.3 1.8 8.1 0.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|284176171|ref|YP_003406448.1| - 0.12 11.8 0.6 0.82 9.1 0.0 2.0 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Spore_YhcN_YlaJ PF09580.5 gi|284176172|ref|YP_003406449.1| - 0.2 11.7 3.7 0.23 11.5 2.5 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) DUF2201_N PF13203.1 gi|284176172|ref|YP_003406449.1| - 3.7 6.6 5.7 3.8 6.6 4.0 1.0 1 0 0 1 1 1 0 Putative metallopeptidase domain DUF1510 PF07423.6 gi|284176172|ref|YP_003406449.1| - 8.5 5.6 9.4 9.3 5.5 6.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Trypan_PARP PF05887.6 gi|284176172|ref|YP_003406449.1| - 9.9 5.9 13.3 12 5.7 9.2 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) PgaD PF13994.1 gi|284176173|ref|YP_003406450.1| - 0.0015 17.9 1.3 0.0025 17.3 0.9 1.4 1 1 0 1 1 1 1 PgaD-like protein DUF1049 PF06305.6 gi|284176173|ref|YP_003406450.1| - 0.0035 16.7 0.5 0.0096 15.3 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1049) COX14 PF14880.1 gi|284176173|ref|YP_003406450.1| - 0.11 12.1 0.5 0.2 11.3 0.1 1.6 2 0 0 2 2 2 0 Cytochrome oxidase c assembly GspL_C PF12693.2 gi|284176173|ref|YP_003406450.1| - 0.52 10.0 4.9 0.63 9.7 0.2 2.0 2 0 0 2 2 2 0 GspL periplasmic domain DUF202 PF02656.10 gi|284176173|ref|YP_003406450.1| - 4.4 7.6 6.7 40 4.5 4.6 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF202) UPF0016 PF01169.14 gi|284176173|ref|YP_003406450.1| - 9.7 6.4 9.4 3.8 7.7 1.1 2.1 1 1 1 2 2 2 0 Uncharacterized protein family UPF0016 Phage_integrase PF00589.17 gi|284176174|ref|YP_003406451.1| - 1e-07 31.7 0.0 4.5e-07 29.7 0.0 2.0 2 1 0 2 2 2 1 Phage integrase family DUF4098 PF13345.1 gi|284176175|ref|YP_003406452.1| - 8.5e-14 51.2 26.3 5.4e-08 32.6 5.2 4.6 2 1 2 4 4 4 4 Domain of unknown function (DUF4098) DUF4097 PF13349.1 gi|284176175|ref|YP_003406452.1| - 2.6e-08 33.5 0.0 0.00018 21.0 0.0 3.2 1 1 2 3 3 3 3 Domain of unknown function (DUF4097) DUF2154 PF09922.4 gi|284176175|ref|YP_003406452.1| - 0.064 12.9 0.8 1.6 8.4 0.0 3.2 3 1 0 3 3 3 0 Cell wall-active antibiotics response protein (DUF2154) CytB6-F_Fe-S PF08802.5 gi|284176175|ref|YP_003406452.1| - 0.11 12.5 0.2 0.28 11.2 0.1 1.7 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit GDPD PF03009.12 gi|284176176|ref|YP_003406453.1| - 2.2e-22 79.8 0.0 4.1e-22 78.9 0.0 1.5 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|284176176|ref|YP_003406453.1| - 0.063 13.4 0.2 0.17 12.0 0.2 1.8 1 0 0 1 1 1 0 Glycerophosphoryl diester phosphodiesterase family Phage_int_SAM_1 PF02899.12 gi|284176177|ref|YP_003406454.1| - 3.2e-05 24.0 2.6 5.3e-05 23.2 0.1 2.5 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.17 gi|284176177|ref|YP_003406454.1| - 0.00059 19.5 0.0 0.0019 17.8 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Oxidored_q1 PF00361.15 gi|284176178|ref|YP_003406455.1| - 5.4e-35 120.9 11.9 5.4e-35 120.9 8.2 2.0 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|284176179|ref|YP_003406456.1| - 6.9e-52 176.3 9.5 8.8e-51 172.7 6.6 2.3 1 1 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|284176179|ref|YP_003406456.1| - 0.0026 17.2 0.8 0.0059 16.1 0.1 2.0 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|284176180|ref|YP_003406457.1| - 5.6e-52 176.6 6.0 1.1e-51 175.6 4.2 1.5 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|284176180|ref|YP_003406457.1| - 0.00023 20.4 6.9 0.00023 20.4 4.8 3.2 3 1 0 3 3 3 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.19 gi|284176181|ref|YP_003406458.1| - 7.8e-24 83.0 2.7 8.8e-24 82.9 1.9 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L O-ag_pol_Wzy PF14296.1 gi|284176181|ref|YP_003406458.1| - 0.015 13.9 1.0 0.014 13.9 0.7 1.1 1 0 0 1 1 1 0 O-antigen polysaccharide polymerase Wzy DUF2108 PF09881.4 gi|284176181|ref|YP_003406458.1| - 0.5 10.2 9.4 0.21 11.4 2.6 2.7 2 1 1 3 3 3 0 Predicted membrane protein (DUF2108) DUF2892 PF11127.3 gi|284176181|ref|YP_003406458.1| - 5.4 6.9 7.6 2.2 8.1 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) IncA PF04156.9 gi|284176181|ref|YP_003406458.1| - 5.4 6.5 7.4 8.7 5.8 1.7 2.2 2 0 0 2 2 2 0 IncA protein DUF3188 PF11384.3 gi|284176181|ref|YP_003406458.1| - 5.7 6.6 7.0 12 5.6 2.6 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3188) ABC2_membrane_5 PF13346.1 gi|284176181|ref|YP_003406458.1| - 6.1 6.0 16.1 0.47 9.7 5.8 1.9 1 1 0 2 2 2 0 ABC-2 family transporter protein PMP1_2 PF08114.6 gi|284176181|ref|YP_003406458.1| - 6.1 6.4 8.6 2.6 7.5 1.8 2.3 2 0 0 2 2 2 0 ATPase proteolipid family CD47 PF04549.9 gi|284176181|ref|YP_003406458.1| - 8.1 6.4 11.3 0.61 10.0 2.7 2.0 2 0 0 2 2 2 0 CD47 transmembrane region MnhB PF04039.8 gi|284176182|ref|YP_003406459.1| - 1.2e-18 67.3 16.0 1.7e-18 66.8 11.1 1.2 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Virul_fac_BrkB PF03631.10 gi|284176182|ref|YP_003406459.1| - 0.13 11.6 4.7 0.067 12.5 2.0 1.4 1 1 0 1 1 1 0 Virulence factor BrkB DUF998 PF06197.8 gi|284176182|ref|YP_003406459.1| - 2.3 7.4 11.9 1.1 8.5 4.3 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF998) DUF1469 PF07332.6 gi|284176182|ref|YP_003406459.1| - 2.6 7.8 8.0 14 5.4 4.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF4040 PF13244.1 gi|284176183|ref|YP_003406460.1| - 2.7e-20 72.1 13.3 2.7e-20 72.1 9.2 2.6 3 1 0 3 3 3 1 Domain of unknown function (DUF4040) Virul_fac_BrkB PF03631.10 gi|284176183|ref|YP_003406460.1| - 0.015 14.6 9.9 0.015 14.6 6.8 1.9 1 1 1 2 2 2 0 Virulence factor BrkB DUF2108 PF09881.4 gi|284176183|ref|YP_003406460.1| - 7 6.5 17.5 0.11 12.3 5.7 2.4 3 0 0 3 3 3 0 Predicted membrane protein (DUF2108) PhaG_MnhG_YufB PF03334.9 gi|284176184|ref|YP_003406461.1| - 2.8e-25 88.1 8.0 3.5e-25 87.8 5.6 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.8 gi|284176185|ref|YP_003406462.1| - 4.3e-18 65.3 4.2 4.3e-18 65.3 2.9 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2109 PF09882.4 gi|284176185|ref|YP_003406462.1| - 0.073 13.0 4.1 0.1 12.5 2.8 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2109) DUF2723 PF11028.3 gi|284176185|ref|YP_003406462.1| - 0.26 10.7 3.9 0.3 10.5 2.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2723) RskA PF10099.4 gi|284176185|ref|YP_003406462.1| - 0.27 10.9 1.4 0.34 10.6 1.0 1.2 1 0 0 1 1 1 0 Anti-sigma-K factor rskA Mem_trans PF03547.13 gi|284176185|ref|YP_003406462.1| - 0.63 8.2 3.2 0.7 8.1 2.2 1.0 1 0 0 1 1 1 0 Membrane transport protein MNHE PF01899.11 gi|284176186|ref|YP_003406463.1| - 1.2e-31 109.4 2.0 1.6e-31 109.0 1.4 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit CbtB PF09489.5 gi|284176187|ref|YP_003406464.1| - 4.9e-11 42.3 1.7 5.7e-11 42.1 1.1 1.1 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtB) CbtA PF09490.5 gi|284176188|ref|YP_003406465.1| - 4.2e-12 45.8 13.1 6.4e-12 45.2 9.1 1.3 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) DUF4010 PF13194.1 gi|284176188|ref|YP_003406465.1| - 0.00042 19.6 3.3 0.00042 19.6 2.3 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4010) 2Fe-2S_thioredx PF01257.14 gi|284176189|ref|YP_003406466.1| - 0.032 13.8 0.0 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like [2Fe-2S] ferredoxin Usp PF00582.21 gi|284176190|ref|YP_003406467.1| - 1.2e-33 116.3 0.4 1.3e-33 116.1 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family zf-ribbon_3 PF13248.1 gi|284176191|ref|YP_003406468.1| - 1.4e-05 24.1 1.5 2e-05 23.6 1.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|284176191|ref|YP_003406468.1| - 5e-05 23.0 1.9 6.1e-05 22.7 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|284176191|ref|YP_003406468.1| - 0.00012 21.7 0.4 0.00013 21.6 0.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|284176191|ref|YP_003406468.1| - 0.00055 19.6 0.3 0.00056 19.5 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|284176191|ref|YP_003406468.1| - 0.0012 18.2 1.3 0.0017 17.7 0.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain TFIIS_C PF01096.13 gi|284176191|ref|YP_003406468.1| - 0.0013 18.3 0.7 0.17 11.5 0.1 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Stc1 PF12898.2 gi|284176191|ref|YP_003406468.1| - 0.0088 16.0 0.7 0.0095 15.9 0.5 1.1 1 0 0 1 1 1 1 Stc1 domain Prok-RING_1 PF14446.1 gi|284176191|ref|YP_003406468.1| - 0.027 14.2 1.0 0.034 13.8 0.7 1.1 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|284176191|ref|YP_003406468.1| - 0.031 14.0 1.0 4.4 7.2 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain FdhE PF04216.7 gi|284176191|ref|YP_003406468.1| - 0.063 12.9 0.9 0.067 12.8 0.6 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zinc-ribbons_6 PF07191.7 gi|284176191|ref|YP_003406468.1| - 0.088 12.6 0.8 0.1 12.3 0.5 1.1 1 0 0 1 1 1 0 zinc-ribbons zf-FPG_IleRS PF06827.9 gi|284176191|ref|YP_003406468.1| - 0.092 12.4 0.6 0.25 11.0 0.1 1.8 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Herpes_UL49_1 PF03117.9 gi|284176191|ref|YP_003406468.1| - 0.11 11.5 1.1 0.14 11.2 0.8 1.3 1 1 0 1 1 1 0 UL49 family UPF0547 PF10571.4 gi|284176191|ref|YP_003406468.1| - 0.11 12.1 0.9 0.19 11.4 0.6 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|284176191|ref|YP_003406468.1| - 0.12 12.3 5.6 0.83 9.6 3.9 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zf-P11 PF03854.9 gi|284176191|ref|YP_003406468.1| - 0.19 11.2 1.8 0.32 10.5 1.2 1.3 1 1 0 1 1 1 0 P-11 zinc finger RNA_POL_M_15KD PF02150.11 gi|284176191|ref|YP_003406468.1| - 0.24 11.1 6.0 1.6 8.4 0.5 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.8 gi|284176191|ref|YP_003406468.1| - 0.26 10.7 3.4 0.64 9.5 2.3 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF2116 PF09889.4 gi|284176191|ref|YP_003406468.1| - 0.31 10.8 1.3 0.41 10.4 0.9 1.2 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF2757 PF10955.3 gi|284176191|ref|YP_003406468.1| - 0.44 10.7 1.9 0.59 10.3 1.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2757) zf-Mss51 PF13824.1 gi|284176191|ref|YP_003406468.1| - 0.45 10.3 2.8 0.39 10.5 0.4 1.8 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.1 gi|284176191|ref|YP_003406468.1| - 0.52 10.0 5.8 4.3 7.0 0.1 2.7 3 0 0 3 3 3 0 Nudix N-terminal DUF2688 PF10892.3 gi|284176191|ref|YP_003406468.1| - 1.4 8.6 3.9 0.65 9.6 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2688) zf-CSL PF05207.8 gi|284176191|ref|YP_003406468.1| - 3.5 7.2 5.5 15 5.2 3.8 1.8 1 1 0 1 1 1 0 CSL zinc finger zf-HIT PF04438.11 gi|284176191|ref|YP_003406468.1| - 3.8 7.2 5.8 49 3.6 4.3 2.0 1 1 1 2 2 2 0 HIT zinc finger Thiolase_N PF00108.18 gi|284176192|ref|YP_003406469.1| - 4.9e-81 271.5 0.0 8.4e-81 270.8 0.0 1.4 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|284176192|ref|YP_003406469.1| - 9.9e-28 96.0 0.0 4.9e-27 93.8 0.0 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|284176192|ref|YP_003406469.1| - 0.00026 20.5 0.7 0.0007 19.1 0.1 1.9 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.5 gi|284176192|ref|YP_003406469.1| - 0.013 15.4 0.0 0.17 11.9 0.0 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Sigma70_ner PF04546.8 gi|284176192|ref|YP_003406469.1| - 0.56 9.7 2.1 0.71 9.4 0.2 1.8 2 0 0 2 2 2 0 Sigma-70, non-essential region DHO_dh PF01180.16 gi|284176193|ref|YP_003406470.1| - 3.7e-84 282.1 0.0 4.2e-84 281.9 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Ub-Mut7C PF14451.1 gi|284176193|ref|YP_003406470.1| - 0.11 11.9 0.1 0.3 10.6 0.0 1.6 1 0 0 1 1 1 0 Mut7-C ubiquitin YodA PF09223.6 gi|284176194|ref|YP_003406471.1| - 0.13 11.8 0.1 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 YodA lipocalin-like domain Amidohydro_4 PF13147.1 gi|284176195|ref|YP_003406472.1| - 5e-30 105.4 3.1 6.5e-30 105.0 2.1 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|284176195|ref|YP_003406472.1| - 1.3e-19 71.0 0.0 2.4e-19 70.1 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|284176195|ref|YP_003406472.1| - 4.9e-15 55.1 1.0 2.7e-14 52.7 0.2 2.4 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|284176195|ref|YP_003406472.1| - 9.1e-10 38.3 2.3 1.3e-06 27.8 0.6 3.1 1 1 0 2 2 2 2 Amidohydrolase family Epimerase PF01370.16 gi|284176196|ref|YP_003406473.1| - 4.7e-60 202.9 0.1 5.6e-60 202.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284176196|ref|YP_003406473.1| - 2.2e-20 72.4 0.0 3.5e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|284176196|ref|YP_003406473.1| - 1.9e-17 63.1 0.1 3.3e-16 59.0 0.1 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|284176196|ref|YP_003406473.1| - 5.8e-17 61.5 0.1 7.1e-17 61.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|284176196|ref|YP_003406473.1| - 6.9e-11 41.5 0.5 1.6e-08 33.7 0.4 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|284176196|ref|YP_003406473.1| - 9.4e-09 35.5 1.1 2.3e-08 34.2 0.8 1.7 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|284176196|ref|YP_003406473.1| - 2e-07 31.1 0.3 5e-07 29.7 0.2 1.7 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|284176196|ref|YP_003406473.1| - 1.7e-05 24.6 0.0 4.2e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit NmrA PF05368.8 gi|284176196|ref|YP_003406473.1| - 4.7e-05 22.7 0.0 0.0003 20.1 0.0 2.0 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.13 gi|284176196|ref|YP_003406473.1| - 0.015 15.2 0.1 0.075 13.0 0.1 2.1 1 1 0 1 1 1 0 TrkA-N domain KR PF08659.5 gi|284176196|ref|YP_003406473.1| - 0.027 14.1 1.9 0.46 10.1 1.3 2.6 1 1 0 1 1 1 0 KR domain HTH_24 PF13412.1 gi|284176198|ref|YP_003406475.1| - 9.7e-05 21.6 0.1 0.00014 21.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|284176198|ref|YP_003406475.1| - 0.00014 21.3 0.0 0.00025 20.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|284176198|ref|YP_003406475.1| - 0.00079 19.0 0.1 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|284176198|ref|YP_003406475.1| - 0.0065 16.1 0.1 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|284176198|ref|YP_003406475.1| - 0.097 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Transglut_C PF00927.17 gi|284176199|ref|YP_003406476.1| - 0.0064 16.5 0.0 0.023 14.7 0.0 2.0 1 0 0 1 1 1 1 Transglutaminase family, C-terminal ig like domain Exo5 PF09810.4 gi|284176200|ref|YP_003406477.1| - 0.01 15.0 0.1 0.013 14.7 0.0 1.1 1 0 0 1 1 1 0 Exonuclease V - a 5' deoxyribonuclease HTH_20 PF12840.2 gi|284176200|ref|YP_003406477.1| - 0.06 13.1 0.0 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|284176200|ref|YP_003406477.1| - 0.064 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HypA PF01155.14 gi|284176201|ref|YP_003406478.1| - 0.0083 15.8 0.3 0.01 15.4 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|284176201|ref|YP_003406478.1| - 0.0098 15.8 0.6 0.43 10.5 0.1 2.1 2 0 0 2 2 2 1 Zinc ribbon domain DUF164 PF02591.10 gi|284176201|ref|YP_003406478.1| - 0.053 13.3 0.6 0.071 12.9 0.4 1.2 1 0 0 1 1 1 0 Putative zinc ribbon domain Prok-RING_1 PF14446.1 gi|284176201|ref|YP_003406478.1| - 0.058 13.1 2.0 0.71 9.6 1.4 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-DNL PF05180.7 gi|284176201|ref|YP_003406478.1| - 0.08 12.6 0.9 0.1 12.3 0.6 1.1 1 0 0 1 1 1 0 DNL zinc finger DZR PF12773.2 gi|284176201|ref|YP_003406478.1| - 0.13 12.0 2.5 0.45 10.3 1.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|284176201|ref|YP_003406478.1| - 0.16 11.1 2.2 1.3 8.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|284176201|ref|YP_003406478.1| - 0.18 11.7 4.7 0.21 11.5 0.5 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNHCP PF12647.2 gi|284176201|ref|YP_003406478.1| - 0.2 11.4 1.6 0.46 10.3 1.1 1.5 1 1 0 1 1 1 0 RNHCP domain Nudix_N_2 PF14803.1 gi|284176201|ref|YP_003406478.1| - 0.25 11.0 1.7 2.1 8.1 1.2 2.1 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|284176201|ref|YP_003406478.1| - 0.73 9.3 3.2 2.6 7.6 2.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain HTH_20 PF12840.2 gi|284176202|ref|YP_003406479.1| - 4.6e-07 29.5 0.0 7.2e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|284176202|ref|YP_003406479.1| - 0.00036 20.1 0.0 0.00051 19.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|284176202|ref|YP_003406479.1| - 0.00039 20.0 0.0 0.00058 19.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|284176202|ref|YP_003406479.1| - 0.0004 19.9 0.0 0.0007 19.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|284176202|ref|YP_003406479.1| - 0.00059 20.1 0.0 0.00087 19.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|284176202|ref|YP_003406479.1| - 0.00063 19.3 0.0 0.00093 18.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|284176202|ref|YP_003406479.1| - 0.00072 18.8 0.1 0.00093 18.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|284176202|ref|YP_003406479.1| - 0.0016 17.9 0.0 0.0024 17.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain FUR PF01475.14 gi|284176202|ref|YP_003406479.1| - 0.015 15.1 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family MarR PF01047.17 gi|284176202|ref|YP_003406479.1| - 0.052 13.2 0.1 0.08 12.6 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|284176202|ref|YP_003406479.1| - 0.06 12.8 0.1 0.097 12.2 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TFIIE_alpha PF02002.12 gi|284176202|ref|YP_003406479.1| - 0.12 11.8 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit PadR PF03551.9 gi|284176203|ref|YP_003406480.1| - 4.3e-13 48.8 0.7 5.1e-13 48.5 0.5 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|284176203|ref|YP_003406480.1| - 0.0005 19.8 0.2 0.0007 19.3 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|284176203|ref|YP_003406480.1| - 0.0025 18.1 0.0 0.0031 17.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|284176203|ref|YP_003406480.1| - 0.026 14.5 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MotA_activ PF09114.5 gi|284176203|ref|YP_003406480.1| - 0.046 13.4 0.0 0.052 13.3 0.0 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain DUF505 PF04458.7 gi|284176203|ref|YP_003406480.1| - 0.074 11.1 0.2 0.083 11.0 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF1495 PF07381.6 gi|284176203|ref|YP_003406480.1| - 0.093 12.4 0.1 0.12 12.0 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF1616 PF07760.6 gi|284176204|ref|YP_003406481.1| - 5.5e-50 170.1 0.0 6.7e-50 169.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) A2M_N_2 PF07703.9 gi|284176204|ref|YP_003406481.1| - 0.058 13.2 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Alpha-2-macroglobulin family N-terminal region DUF3988 PF13149.1 gi|284176204|ref|YP_003406481.1| - 0.059 12.8 0.3 0.059 12.8 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3988) DUF3426 PF11906.3 gi|284176204|ref|YP_003406481.1| - 0.11 12.1 0.0 0.11 12.1 0.0 2.3 2 1 0 3 3 3 0 Protein of unknown function (DUF3426) DUF4231 PF14015.1 gi|284176205|ref|YP_003406482.1| - 0.015 15.2 0.0 0.044 13.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) CRISPR_Cse2 PF09485.5 gi|284176205|ref|YP_003406482.1| - 0.042 13.9 0.2 0.11 12.5 0.1 1.7 2 0 0 2 2 2 0 CRISPR-associated protein Cse2 (CRISPR_cse2) Tweety PF04906.8 gi|284176205|ref|YP_003406482.1| - 0.17 10.2 0.7 0.24 9.7 0.5 1.3 1 0 0 1 1 1 0 Tweety DUF4131 PF13567.1 gi|284176205|ref|YP_003406482.1| - 0.2 11.0 3.2 3.5 7.0 0.6 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) Hexapep PF00132.19 gi|284176206|ref|YP_003406483.1| - 9.4e-29 97.6 16.2 1.9e-10 39.7 0.2 5.1 3 1 3 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|284176206|ref|YP_003406483.1| - 5.7e-21 73.7 6.7 2.2e-08 33.4 0.2 4.8 4 1 1 5 5 5 5 Hexapeptide repeat of succinyl-transferase DegT_DnrJ_EryC1 PF01041.12 gi|284176207|ref|YP_003406484.1| - 2.7e-121 405.0 0.0 3.1e-121 404.8 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|284176207|ref|YP_003406484.1| - 1.3e-09 37.4 0.0 2e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|284176207|ref|YP_003406484.1| - 6.7e-09 35.2 0.0 1.1e-08 34.5 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|284176207|ref|YP_003406484.1| - 0.00015 20.6 0.0 0.00083 18.1 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Rnk_N PF14760.1 gi|284176207|ref|YP_003406484.1| - 0.64 10.1 5.6 4.3 7.4 0.2 2.9 2 0 0 2 2 2 0 Rnk N-terminus GFO_IDH_MocA PF01408.17 gi|284176208|ref|YP_003406485.1| - 6.1e-26 91.2 0.8 1.4e-25 90.1 0.6 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|284176208|ref|YP_003406485.1| - 1.3e-07 31.9 0.1 3.7e-07 30.4 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|284176208|ref|YP_003406485.1| - 6.9e-06 26.3 0.2 1.6e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|284176208|ref|YP_003406485.1| - 2.2e-05 23.4 0.5 4e-05 22.5 0.4 1.4 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_2 PF03446.10 gi|284176208|ref|YP_003406485.1| - 3.3e-05 23.7 1.1 9.2e-05 22.3 0.1 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|284176208|ref|YP_003406485.1| - 5.9e-05 22.3 0.1 0.00013 21.1 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.12 gi|284176208|ref|YP_003406485.1| - 0.00059 19.6 0.0 0.0023 17.6 0.0 2.0 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain Saccharop_dh PF03435.13 gi|284176208|ref|YP_003406485.1| - 0.00085 18.4 1.8 0.0014 17.6 1.2 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase IlvN PF07991.7 gi|284176208|ref|YP_003406485.1| - 0.0013 18.1 0.1 0.0031 16.9 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain CoA_binding PF02629.14 gi|284176208|ref|YP_003406485.1| - 0.0014 19.0 0.1 0.0054 17.2 0.1 2.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding_2 PF13380.1 gi|284176208|ref|YP_003406485.1| - 0.041 14.0 0.5 0.13 12.4 0.4 1.9 1 1 0 1 1 1 0 CoA binding domain DapB_N PF01113.15 gi|284176208|ref|YP_003406485.1| - 0.055 13.3 1.9 0.075 12.9 0.2 2.0 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus UDPG_MGDP_dh_N PF03721.9 gi|284176209|ref|YP_003406486.1| - 2.6e-38 131.2 0.0 4.1e-38 130.6 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|284176209|ref|YP_003406486.1| - 2.5e-17 62.9 0.1 6.4e-17 61.6 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|284176209|ref|YP_003406486.1| - 1.6e-16 60.2 0.0 3e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.10 gi|284176209|ref|YP_003406486.1| - 5.2e-07 29.6 0.0 1.4e-06 28.2 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|284176209|ref|YP_003406486.1| - 4e-05 23.4 0.2 9.9e-05 22.1 0.0 1.7 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|284176209|ref|YP_003406486.1| - 0.011 15.7 0.8 0.043 13.8 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.13 gi|284176209|ref|YP_003406486.1| - 0.036 13.7 0.0 0.057 13.0 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glycos_transf_2 PF00535.21 gi|284176210|ref|YP_003406487.1| - 5.9e-18 65.1 0.1 5.3e-17 62.0 0.1 2.2 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284176210|ref|YP_003406487.1| - 1.8e-05 24.6 0.4 3.9e-05 23.5 0.3 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Virul_fac_BrkB PF03631.10 gi|284176210|ref|YP_003406487.1| - 0.044 13.1 0.3 0.062 12.6 0.2 1.2 1 0 0 1 1 1 0 Virulence factor BrkB TFIIS_C PF01096.13 gi|284176211|ref|YP_003406488.1| - 0.00011 21.6 0.8 0.008 15.7 0.2 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|284176211|ref|YP_003406488.1| - 0.0026 17.5 0.6 0.0029 17.3 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|284176211|ref|YP_003406488.1| - 0.0094 15.6 2.7 0.013 15.2 1.8 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-UBR PF02207.15 gi|284176211|ref|YP_003406488.1| - 0.018 14.7 0.3 0.023 14.4 0.2 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) HypA PF01155.14 gi|284176211|ref|YP_003406488.1| - 0.02 14.6 0.6 0.024 14.3 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1 PF03811.8 gi|284176211|ref|YP_003406488.1| - 0.035 13.5 2.9 0.053 13.0 0.2 2.1 2 0 0 2 2 2 0 InsA N-terminal domain Zn-ribbon_8 PF09723.5 gi|284176211|ref|YP_003406488.1| - 0.064 13.2 4.5 0.5 10.3 3.1 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|284176211|ref|YP_003406488.1| - 0.1 12.1 0.5 0.14 11.6 0.4 1.2 1 0 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|284176211|ref|YP_003406488.1| - 0.13 12.0 3.1 0.57 9.9 2.5 1.7 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|284176211|ref|YP_003406488.1| - 0.17 11.3 3.5 0.39 10.2 2.4 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|284176211|ref|YP_003406488.1| - 0.34 10.7 2.5 3.8 7.4 0.0 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|284176211|ref|YP_003406488.1| - 0.38 10.3 3.3 9.1 5.9 0.1 2.2 1 1 1 2 2 2 0 Ribosomal protein S27 zf-ribbon_3 PF13248.1 gi|284176211|ref|YP_003406488.1| - 0.44 9.8 3.5 2.1 7.6 2.5 1.8 1 1 0 1 1 1 0 zinc-ribbon domain HTH_45 PF14947.1 gi|284176213|ref|YP_003406490.1| - 0.063 13.1 0.0 0.098 12.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Mrr_N PF14338.1 gi|284176213|ref|YP_003406490.1| - 0.12 12.4 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Mrr N-terminal domain Thioredoxin PF00085.15 gi|284176214|ref|YP_003406491.1| - 6.5e-12 45.0 0.0 7.6e-12 44.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.1 gi|284176214|ref|YP_003406491.1| - 1.8e-07 30.8 0.0 3.8e-07 29.8 0.0 1.5 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.1 gi|284176214|ref|YP_003406491.1| - 1.2e-05 25.5 0.0 0.001 19.2 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|284176214|ref|YP_003406491.1| - 0.00092 18.9 0.0 0.0013 18.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.9 gi|284176214|ref|YP_003406491.1| - 0.011 16.0 0.0 0.012 15.8 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_8 PF13905.1 gi|284176214|ref|YP_003406491.1| - 0.061 13.4 0.0 6.3 6.9 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin-like HyaE PF07449.6 gi|284176214|ref|YP_003406491.1| - 0.096 12.6 0.0 0.28 11.0 0.0 1.9 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE zf-MIZ PF02891.15 gi|284176215|ref|YP_003406492.1| - 0.058 12.9 1.0 0.094 12.2 0.7 1.4 1 0 0 1 1 1 0 MIZ/SP-RING zinc finger Gln-synt_C PF00120.19 gi|284176216|ref|YP_003406493.1| - 2.3e-103 344.8 0.1 5.8e-103 343.5 0.1 1.6 2 0 0 2 2 2 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|284176216|ref|YP_003406493.1| - 7e-31 105.6 0.5 1.5e-30 104.6 0.0 1.8 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain TFIIE_alpha PF02002.12 gi|284176217|ref|YP_003406494.1| - 0.0056 16.1 0.0 0.0069 15.8 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|284176217|ref|YP_003406494.1| - 0.0077 15.9 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|284176217|ref|YP_003406494.1| - 0.0095 15.6 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|284176217|ref|YP_003406494.1| - 0.034 13.8 0.1 0.043 13.4 0.0 1.2 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.7 gi|284176217|ref|YP_003406494.1| - 0.038 13.8 0.0 0.06 13.2 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC LRR_9 PF14580.1 gi|284176217|ref|YP_003406494.1| - 0.1 12.1 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 Leucine-rich repeat HTH_42 PF06224.7 gi|284176217|ref|YP_003406494.1| - 0.13 11.5 0.0 0.13 11.5 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain PIN_2 PF10130.4 gi|284176218|ref|YP_003406495.1| - 0.44 10.5 2.3 0.66 10.0 1.6 1.2 1 0 0 1 1 1 0 PIN domain Polysacc_synt_3 PF13440.1 gi|284176219|ref|YP_003406496.1| - 0.013 15.0 1.6 0.013 14.9 1.1 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein MARVEL PF01284.18 gi|284176219|ref|YP_003406496.1| - 0.039 13.7 2.2 0.97 9.2 1.3 2.2 1 1 1 2 2 2 0 Membrane-associating domain FA_desaturase PF00487.19 gi|284176219|ref|YP_003406496.1| - 0.12 11.7 0.7 0.14 11.5 0.5 1.1 1 0 0 1 1 1 0 Fatty acid desaturase Metallophos_2 PF12850.2 gi|284176221|ref|YP_003406498.1| - 1.3e-07 31.5 0.0 2.5e-07 30.6 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|284176221|ref|YP_003406498.1| - 1.5e-05 24.4 0.4 0.00032 20.1 0.3 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|284176223|ref|YP_003406500.1| - 3.4e-07 30.0 3.6 0.12 12.2 0.0 4.1 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain NfeD PF01957.13 gi|284176224|ref|YP_003406501.1| - 0.01 15.9 2.9 0.011 15.8 2.0 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF1469 PF07332.6 gi|284176224|ref|YP_003406501.1| - 0.067 12.9 6.1 0.076 12.7 4.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) BPD_transp_1 PF00528.17 gi|284176224|ref|YP_003406501.1| - 0.12 11.8 2.9 0.13 11.7 2.0 1.0 1 0 0 1 1 1 0 Binding-protein-dependent transport system inner membrane component DUF1453 PF07301.6 gi|284176224|ref|YP_003406501.1| - 0.31 10.8 2.4 0.39 10.5 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1453) FeoB_C PF07664.7 gi|284176224|ref|YP_003406501.1| - 0.31 10.4 3.3 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus HAMP PF00672.20 gi|284176224|ref|YP_003406501.1| - 1.9 8.7 9.5 2.6 8.2 2.1 2.1 2 0 0 2 2 2 0 HAMP domain Zip PF02535.17 gi|284176225|ref|YP_003406502.1| - 6.4e-23 81.2 5.5 8.4e-23 80.8 3.8 1.2 1 0 0 1 1 1 1 ZIP Zinc transporter Copper-bind PF00127.15 gi|284176226|ref|YP_003406503.1| - 2.3e-10 40.5 0.1 5.3e-10 39.4 0.1 1.6 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family RibD_C PF01872.12 gi|284176227|ref|YP_003406504.1| - 1.7e-50 171.4 0.0 1.8e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain ECH PF00378.15 gi|284176228|ref|YP_003406505.1| - 1.2e-65 221.0 0.6 1.3e-65 220.9 0.4 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|284176228|ref|YP_003406505.1| - 0.00029 19.7 0.0 0.00045 19.0 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase PMSR PF01625.16 gi|284176229|ref|YP_003406506.1| - 1.4e-66 223.2 0.6 1.7e-66 222.9 0.4 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase CBS PF00571.23 gi|284176230|ref|YP_003406507.1| - 3.1e-27 94.0 1.0 1.6e-13 50.2 0.2 2.2 2 0 0 2 2 2 2 CBS domain DisA_N PF02457.11 gi|284176230|ref|YP_003406507.1| - 0.041 13.0 0.0 0.052 12.6 0.0 1.3 1 0 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding Acetyltransf_10 PF13673.1 gi|284176230|ref|YP_003406507.1| - 0.058 13.5 0.0 1.8 8.6 0.0 2.2 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain DAO PF01266.19 gi|284176231|ref|YP_003406508.1| - 1.2e-56 192.2 7.3 1.3e-56 192.0 5.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|284176231|ref|YP_003406508.1| - 2.1e-07 30.3 4.6 0.001 18.1 1.1 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|284176231|ref|YP_003406508.1| - 1.3e-06 27.5 5.7 1.7e-06 27.1 4.0 1.1 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|284176231|ref|YP_003406508.1| - 1.8e-05 23.9 7.1 0.0001 21.5 4.9 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|284176231|ref|YP_003406508.1| - 0.00021 21.2 0.8 0.0025 17.7 0.5 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|284176231|ref|YP_003406508.1| - 0.0038 16.9 0.1 0.0082 15.8 0.0 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|284176231|ref|YP_003406508.1| - 0.0085 16.1 0.0 0.52 10.3 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|284176231|ref|YP_003406508.1| - 0.011 16.1 0.3 0.024 15.0 0.2 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|284176231|ref|YP_003406508.1| - 0.012 15.5 2.7 0.047 13.7 1.3 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|284176231|ref|YP_003406508.1| - 0.013 13.9 0.2 0.4 9.0 0.2 2.1 2 0 0 2 2 2 0 HI0933-like protein ApbA PF02558.11 gi|284176231|ref|YP_003406508.1| - 0.024 14.0 0.4 0.038 13.4 0.3 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA YbjQ_1 PF01906.12 gi|284176231|ref|YP_003406508.1| - 0.077 13.4 0.0 0.15 12.5 0.0 1.4 1 0 0 1 1 1 0 Putative heavy-metal-binding Thi4 PF01946.12 gi|284176231|ref|YP_003406508.1| - 0.079 12.0 2.5 0.73 8.8 0.1 2.7 3 1 0 3 3 3 0 Thi4 family NAD_binding_10 PF13460.1 gi|284176231|ref|YP_003406508.1| - 0.08 12.9 2.2 0.18 11.7 1.1 1.9 2 0 0 2 2 2 0 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|284176231|ref|YP_003406508.1| - 0.16 11.6 0.1 0.3 10.8 0.1 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDA PF01134.17 gi|284176231|ref|YP_003406508.1| - 1.1 8.1 3.6 1.8 7.3 0.9 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|284176232|ref|YP_003406509.1| - 5e-23 81.8 1.7 8.3e-21 74.5 1.2 2.9 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|284176232|ref|YP_003406509.1| - 3.1e-15 55.9 0.1 2.8e-14 52.8 0.1 2.6 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|284176232|ref|YP_003406509.1| - 6.9e-11 41.6 1.8 6.8e-07 28.4 0.7 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|284176232|ref|YP_003406509.1| - 1.4e-10 40.6 1.7 5.1e-07 28.9 0.5 2.6 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|284176232|ref|YP_003406509.1| - 7e-09 35.8 0.0 8.6e-06 25.7 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|284176232|ref|YP_003406509.1| - 8.5e-08 32.5 0.1 7.3e-05 23.0 0.2 2.9 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|284176232|ref|YP_003406509.1| - 1.2e-05 23.9 0.0 7.3e-05 21.4 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|284176232|ref|YP_003406509.1| - 3.7e-05 23.0 0.1 6.6e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|284176232|ref|YP_003406509.1| - 0.00013 21.2 0.1 0.0002 20.5 0.1 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|284176232|ref|YP_003406509.1| - 0.00023 20.3 0.1 0.0014 17.7 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|284176232|ref|YP_003406509.1| - 0.0094 14.8 0.4 0.013 14.3 0.3 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|284176232|ref|YP_003406509.1| - 0.012 15.6 0.1 0.025 14.6 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.14 gi|284176232|ref|YP_003406509.1| - 0.016 13.4 0.0 0.023 12.8 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like 3HCDH_N PF02737.13 gi|284176232|ref|YP_003406509.1| - 0.054 13.1 0.3 0.1 12.2 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HTH_20 PF12840.2 gi|284176233|ref|YP_003406510.1| - 8.1e-08 31.9 0.1 1.1e-07 31.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|284176233|ref|YP_003406510.1| - 5.7e-05 22.6 0.0 0.00014 21.3 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|284176233|ref|YP_003406510.1| - 0.00015 21.4 0.0 0.00018 21.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|284176233|ref|YP_003406510.1| - 0.00031 20.3 0.0 0.00047 19.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|284176233|ref|YP_003406510.1| - 0.00054 19.2 0.0 0.001 18.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284176233|ref|YP_003406510.1| - 0.00065 19.3 0.2 0.00092 18.8 0.1 1.2 1 0 0 1 1 1 1 MarR family DUF742 PF05331.6 gi|284176233|ref|YP_003406510.1| - 0.0024 17.4 0.1 0.003 17.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_7 PF02796.10 gi|284176233|ref|YP_003406510.1| - 0.015 15.1 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF3067 PF11267.3 gi|284176233|ref|YP_003406510.1| - 0.097 12.7 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3067) HTH_27 PF13463.1 gi|284176233|ref|YP_003406510.1| - 0.12 12.6 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|284176233|ref|YP_003406510.1| - 0.29 10.6 0.2 0.29 10.6 0.1 1.8 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain CobA_CobO_BtuR PF02572.10 gi|284176234|ref|YP_003406511.1| - 3.5e-55 186.2 0.0 4.1e-55 186.0 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ABC_tran PF00005.22 gi|284176235|ref|YP_003406512.1| - 4e-27 95.1 0.0 6.7e-27 94.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284176235|ref|YP_003406512.1| - 7.4e-13 49.0 0.0 9.3e-09 35.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|284176235|ref|YP_003406512.1| - 0.00011 21.4 0.0 0.00057 19.0 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.1 gi|284176235|ref|YP_003406512.1| - 0.00055 18.5 0.2 0.12 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|284176235|ref|YP_003406512.1| - 0.0072 16.5 0.1 0.4 10.8 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|284176235|ref|YP_003406512.1| - 0.013 15.4 0.7 0.091 12.7 0.5 2.1 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|284176235|ref|YP_003406512.1| - 0.022 14.3 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.1 gi|284176235|ref|YP_003406512.1| - 0.039 13.9 0.0 0.066 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|284176235|ref|YP_003406512.1| - 0.046 13.6 0.3 0.096 12.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|284176235|ref|YP_003406512.1| - 0.046 14.0 0.1 0.079 13.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|284176235|ref|YP_003406512.1| - 0.055 12.2 0.1 0.089 11.5 0.1 1.3 1 0 0 1 1 1 0 ArgK protein AAA_24 PF13479.1 gi|284176235|ref|YP_003406512.1| - 0.059 12.9 0.2 0.11 12.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|284176235|ref|YP_003406512.1| - 0.07 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|284176235|ref|YP_003406512.1| - 0.088 12.9 0.1 0.21 11.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|284176235|ref|YP_003406512.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 HAD PF12710.2 gi|284176235|ref|YP_003406512.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.3 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF3098 PF11297.3 gi|284176236|ref|YP_003406513.1| - 3.1 7.5 6.5 5.4 6.8 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3098) Cdc6_C PF09079.6 gi|284176237|ref|YP_003406514.1| - 3.7e-23 81.0 0.4 1.4e-22 79.2 0.0 2.2 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|284176237|ref|YP_003406514.1| - 1.5e-12 47.8 0.3 7e-11 42.4 0.0 3.0 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|284176237|ref|YP_003406514.1| - 4.6e-12 46.2 0.0 1.2e-11 44.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284176237|ref|YP_003406514.1| - 6.9e-07 29.5 0.0 1.6e-06 28.3 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|284176237|ref|YP_003406514.1| - 4.8e-05 23.1 0.0 9.6e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|284176237|ref|YP_003406514.1| - 0.00014 20.8 0.0 0.00028 19.8 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.7 gi|284176237|ref|YP_003406514.1| - 0.00099 18.7 0.0 0.0017 18.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain KAP_NTPase PF07693.9 gi|284176237|ref|YP_003406514.1| - 0.0025 16.8 0.0 0.54 9.1 0.0 2.2 1 1 1 2 2 2 1 KAP family P-loop domain AAA_18 PF13238.1 gi|284176237|ref|YP_003406514.1| - 0.0034 17.6 0.0 0.0099 16.1 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284176237|ref|YP_003406514.1| - 0.004 17.9 0.8 0.015 16.1 0.5 2.4 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|284176237|ref|YP_003406514.1| - 0.0045 17.1 0.0 0.009 16.1 0.0 1.6 1 0 0 1 1 1 1 RNA helicase DUF815 PF05673.8 gi|284176237|ref|YP_003406514.1| - 0.0045 15.9 0.0 0.0072 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|284176237|ref|YP_003406514.1| - 0.0092 15.4 0.0 0.17 11.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_32 PF13654.1 gi|284176237|ref|YP_003406514.1| - 0.011 14.4 0.4 0.44 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|284176237|ref|YP_003406514.1| - 0.031 12.8 0.0 0.19 10.3 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|284176237|ref|YP_003406514.1| - 0.032 13.1 0.0 0.051 12.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activat PF00158.21 gi|284176237|ref|YP_003406514.1| - 0.037 13.4 0.0 0.072 12.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain DEAD PF00270.24 gi|284176237|ref|YP_003406514.1| - 0.085 12.3 0.0 4.9 6.6 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_24 PF13479.1 gi|284176237|ref|YP_003406514.1| - 0.087 12.3 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|284176237|ref|YP_003406514.1| - 0.1 13.1 0.0 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_5 PF07728.9 gi|284176237|ref|YP_003406514.1| - 0.11 12.1 0.0 0.46 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase_2 PF13335.1 gi|284176237|ref|YP_003406514.1| - 0.43 10.9 2.8 0.62 10.4 0.5 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF1769 PF08588.5 gi|284176238|ref|YP_003406515.1| - 0.083 12.8 0.0 0.097 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1769) GATase_3 PF07685.9 gi|284176239|ref|YP_003406516.1| - 1.3e-36 125.5 0.0 2.5e-36 124.6 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|284176239|ref|YP_003406516.1| - 6.4e-26 90.9 0.0 1e-25 90.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|284176239|ref|YP_003406516.1| - 7.1e-19 68.2 0.1 4.6e-18 65.5 0.0 2.3 3 1 0 3 3 3 1 AAA domain GATase PF00117.23 gi|284176239|ref|YP_003406516.1| - 0.0012 18.3 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|284176239|ref|YP_003406516.1| - 0.067 12.6 0.1 0.14 11.5 0.1 1.5 1 0 0 1 1 1 0 DJ-1/PfpI family CTP_synth_N PF06418.9 gi|284176239|ref|YP_003406516.1| - 0.14 11.1 0.0 0.25 10.3 0.0 1.5 1 1 0 1 1 1 0 CTP synthase N-terminus RHH_1 PF01402.16 gi|284176240|ref|YP_003406517.1| - 0.075 12.9 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family HTH_10 PF04967.7 gi|284176242|ref|YP_003406519.1| - 2.4e-18 65.4 0.0 1.2e-17 63.2 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain PAS_4 PF08448.5 gi|284176242|ref|YP_003406519.1| - 2.4e-13 50.0 4.3 2.4e-12 46.8 0.2 3.6 3 0 0 3 3 3 1 PAS fold GAF_2 PF13185.1 gi|284176242|ref|YP_003406519.1| - 1.3e-11 45.2 0.2 4.1e-11 43.5 0.1 1.9 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|284176242|ref|YP_003406519.1| - 1.8e-08 34.6 0.0 7.1e-08 32.7 0.0 2.1 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.1 gi|284176242|ref|YP_003406519.1| - 1.5e-06 28.3 0.0 5e-06 26.6 0.0 1.9 1 0 0 1 1 1 1 GAF domain Sigma70_r4 PF04545.11 gi|284176242|ref|YP_003406519.1| - 0.00027 20.1 0.0 0.0014 17.9 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|284176242|ref|YP_003406519.1| - 0.00034 20.0 0.0 0.0013 18.1 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 GAF PF01590.21 gi|284176242|ref|YP_003406519.1| - 0.0038 17.3 0.1 0.011 15.8 0.0 1.8 2 0 0 2 2 2 1 GAF domain PAS PF00989.19 gi|284176242|ref|YP_003406519.1| - 0.0045 16.7 0.0 0.014 15.1 0.0 2.0 1 0 0 1 1 1 1 PAS fold Fer2 PF00111.22 gi|284176242|ref|YP_003406519.1| - 0.053 13.2 1.5 0.27 10.9 1.1 2.3 1 1 1 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain HTH_5 PF01022.15 gi|284176242|ref|YP_003406519.1| - 0.068 12.8 0.0 0.22 11.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Peptidase_M10 PF00413.19 gi|284176244|ref|YP_003406521.1| - 2.9e-05 23.8 0.0 3.8e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_4 PF13583.1 gi|284176244|ref|YP_003406521.1| - 0.00028 20.4 0.0 0.00038 20.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|284176244|ref|YP_003406521.1| - 0.00059 19.8 0.1 0.001 19.0 0.0 1.5 1 1 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_3 PF13582.1 gi|284176244|ref|YP_003406521.1| - 0.0013 19.2 0.0 0.0021 18.5 0.0 1.4 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Astacin PF01400.19 gi|284176244|ref|YP_003406521.1| - 0.0017 17.7 0.0 0.0026 17.1 0.0 1.2 1 0 0 1 1 1 1 Astacin (Peptidase family M12A) Reprolysin_2 PF13574.1 gi|284176244|ref|YP_003406521.1| - 0.0031 17.5 0.0 0.0039 17.2 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.4 gi|284176244|ref|YP_003406521.1| - 0.009 14.9 0.0 0.017 13.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase M66 Peptidase_M6 PF05547.6 gi|284176244|ref|YP_003406521.1| - 0.026 12.5 0.0 0.036 12.0 0.0 1.1 1 0 0 1 1 1 0 Immune inhibitor A peptidase M6 Metallopep PF12044.3 gi|284176244|ref|YP_003406521.1| - 0.036 12.5 0.1 0.05 12.0 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M43 PF05572.8 gi|284176244|ref|YP_003406521.1| - 0.089 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A DUF1025 PF06262.6 gi|284176244|ref|YP_003406521.1| - 0.16 11.7 0.7 0.32 10.7 0.5 1.4 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase HTH_24 PF13412.1 gi|284176245|ref|YP_003406522.1| - 1.1e-07 31.0 0.0 1.6e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284176245|ref|YP_003406522.1| - 0.00019 21.0 0.0 0.00026 20.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.4 gi|284176245|ref|YP_003406522.1| - 0.0011 18.8 0.0 0.0022 17.8 0.0 1.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|284176245|ref|YP_003406522.1| - 0.0031 17.1 0.0 0.0043 16.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|284176245|ref|YP_003406522.1| - 0.0046 16.7 0.0 0.0064 16.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_AsnC-type PF13404.1 gi|284176245|ref|YP_003406522.1| - 0.0074 15.7 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain z-alpha PF02295.12 gi|284176245|ref|YP_003406522.1| - 0.033 13.9 0.0 0.053 13.2 0.0 1.2 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain MarR_2 PF12802.2 gi|284176245|ref|YP_003406522.1| - 0.038 13.6 0.0 0.058 13.0 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|284176245|ref|YP_003406522.1| - 0.067 13.0 0.0 0.099 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|284176245|ref|YP_003406522.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 MarR family Trehalose_PPase PF02358.11 gi|284176246|ref|YP_003406523.1| - 2.9e-43 147.4 0.0 3.6e-43 147.1 0.0 1.1 1 0 0 1 1 1 1 Trehalose-phosphatase Glyco_transf_20 PF00982.16 gi|284176247|ref|YP_003406524.1| - 2.1e-114 382.6 0.0 2.5e-114 382.4 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 COQ9 PF08511.6 gi|284176247|ref|YP_003406524.1| - 0.1 12.0 0.3 0.4 10.2 0.0 2.0 2 0 0 2 2 2 0 COQ9 Glycos_transf_1 PF00534.15 gi|284176247|ref|YP_003406524.1| - 0.12 11.8 0.0 2.9 7.2 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferases group 1 Peptidase_M24 PF00557.19 gi|284176248|ref|YP_003406525.1| - 1.1e-56 191.7 1.0 1.5e-56 191.2 0.7 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|284176248|ref|YP_003406525.1| - 9.9e-19 68.1 0.0 1.7e-18 67.3 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Cdc6_C PF09079.6 gi|284176249|ref|YP_003406526.1| - 2.1e-18 65.7 0.0 4.7e-18 64.6 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|284176249|ref|YP_003406526.1| - 2.5e-15 56.7 0.1 7.7e-15 55.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284176249|ref|YP_003406526.1| - 1.2e-14 54.6 2.1 7.6e-13 48.8 0.0 3.2 3 1 0 3 3 3 1 AAA ATPase domain AAA_5 PF07728.9 gi|284176249|ref|YP_003406526.1| - 2.4e-07 30.5 0.0 5.1e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|284176249|ref|YP_003406526.1| - 2.5e-06 27.2 0.0 5.7e-06 26.0 0.0 1.6 2 0 0 2 2 1 1 NACHT domain AAA PF00004.24 gi|284176249|ref|YP_003406526.1| - 2.9e-05 24.2 0.3 0.00015 21.9 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|284176249|ref|YP_003406526.1| - 3.4e-05 23.3 0.0 6.2e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_24 PF13479.1 gi|284176249|ref|YP_003406526.1| - 0.0014 18.2 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|284176249|ref|YP_003406526.1| - 0.0018 17.9 0.0 0.0032 17.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase DUF2075 PF09848.4 gi|284176249|ref|YP_003406526.1| - 0.0024 16.8 0.0 0.0031 16.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|284176249|ref|YP_003406526.1| - 0.0032 16.4 0.0 0.0054 15.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.1 gi|284176249|ref|YP_003406526.1| - 0.0042 17.1 0.0 0.015 15.3 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|284176249|ref|YP_003406526.1| - 0.0044 16.9 0.0 0.0074 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) NB-ARC PF00931.17 gi|284176249|ref|YP_003406526.1| - 0.0045 15.8 0.0 0.0069 15.2 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain Mg_chelatase PF01078.16 gi|284176249|ref|YP_003406526.1| - 0.012 14.8 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|284176249|ref|YP_003406526.1| - 0.017 14.3 0.1 2.7 7.1 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein RNA_helicase PF00910.17 gi|284176249|ref|YP_003406526.1| - 0.023 14.8 0.0 0.046 13.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DEAD PF00270.24 gi|284176249|ref|YP_003406526.1| - 0.027 13.9 0.1 7.4 6.0 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase DUF87 PF01935.12 gi|284176249|ref|YP_003406526.1| - 0.028 14.2 1.4 0.037 13.8 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 IstB_IS21 PF01695.12 gi|284176249|ref|YP_003406526.1| - 0.039 13.3 0.2 0.12 11.7 0.1 1.8 1 1 1 2 2 2 0 IstB-like ATP binding protein HTH_29 PF13551.1 gi|284176249|ref|YP_003406526.1| - 0.054 13.6 0.2 0.1 12.7 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix AAA_18 PF13238.1 gi|284176249|ref|YP_003406526.1| - 0.056 13.7 0.1 0.12 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|284176249|ref|YP_003406526.1| - 0.069 12.0 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|284176249|ref|YP_003406526.1| - 0.082 13.7 1.0 0.22 12.3 0.7 2.2 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|284176249|ref|YP_003406526.1| - 0.097 12.1 0.0 0.22 10.9 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family zinc_ribbon_4 PF13717.1 gi|284176250|ref|YP_003406527.1| - 0.00018 21.1 1.3 0.11 12.2 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284176250|ref|YP_003406527.1| - 0.00024 20.6 1.0 0.13 11.8 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|284176250|ref|YP_003406527.1| - 0.0028 17.3 4.2 0.49 10.1 0.7 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|284176250|ref|YP_003406527.1| - 0.0033 17.0 1.8 1.1 9.0 0.0 2.2 2 0 0 2 2 2 2 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|284176250|ref|YP_003406527.1| - 0.0035 16.7 1.3 0.14 11.6 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284176250|ref|YP_003406527.1| - 0.0066 16.0 0.9 0.14 11.7 0.1 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|284176250|ref|YP_003406527.1| - 0.0075 16.0 1.7 0.024 14.4 1.2 1.7 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|284176250|ref|YP_003406527.1| - 0.0087 15.2 4.0 0.057 12.6 2.8 1.9 1 1 0 1 1 1 1 zinc-ribbon domain V4R PF02830.13 gi|284176250|ref|YP_003406527.1| - 0.02 14.7 0.3 0.049 13.4 0.0 1.6 2 0 0 2 2 2 0 V4R domain zf-HYPF PF07503.7 gi|284176250|ref|YP_003406527.1| - 0.029 13.7 1.6 0.33 10.4 0.1 2.1 2 0 0 2 2 2 0 HypF finger zinc-ribbons_6 PF07191.7 gi|284176250|ref|YP_003406527.1| - 0.03 14.1 0.7 0.047 13.4 0.5 1.4 1 1 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|284176250|ref|YP_003406527.1| - 0.042 13.7 1.1 2.6 8.0 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|284176250|ref|YP_003406527.1| - 0.057 13.1 1.4 0.3 10.7 0.0 2.0 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-LITAF-like PF10601.4 gi|284176250|ref|YP_003406527.1| - 0.086 12.7 0.4 4.2 7.3 0.1 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-IS66 PF13005.2 gi|284176250|ref|YP_003406527.1| - 0.094 12.7 1.9 1.2 9.1 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|284176250|ref|YP_003406527.1| - 0.1 12.0 2.1 3.2 7.3 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|284176250|ref|YP_003406527.1| - 0.12 12.1 0.9 2.3 8.1 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|284176250|ref|YP_003406527.1| - 0.13 11.7 1.8 1.3 8.5 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.1 gi|284176250|ref|YP_003406527.1| - 0.17 11.9 0.6 5.1 7.2 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-CHY PF05495.7 gi|284176250|ref|YP_003406527.1| - 0.2 11.8 1.3 0.47 10.6 0.9 1.7 1 1 0 1 1 1 0 CHY zinc finger CpXC PF14353.1 gi|284176250|ref|YP_003406527.1| - 0.25 11.3 1.7 3 7.8 1.2 2.0 1 1 0 1 1 1 0 CpXC protein TF_Zn_Ribbon PF08271.7 gi|284176250|ref|YP_003406527.1| - 0.56 9.5 3.8 9.6 5.6 2.6 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Iron_transport PF10634.4 gi|284176251|ref|YP_003406528.1| - 0.00027 20.8 0.0 0.0035 17.2 0.0 2.3 2 0 0 2 2 2 1 Fe2+ transport protein TAT_signal PF10518.4 gi|284176251|ref|YP_003406528.1| - 0.011 15.6 3.5 0.018 14.9 2.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PPC PF04151.10 gi|284176251|ref|YP_003406528.1| - 0.035 15.0 0.0 0.17 12.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain SCO1-SenC PF02630.9 gi|284176252|ref|YP_003406529.1| - 4.6e-10 39.3 0.1 1.8e-08 34.2 0.0 2.2 2 1 0 2 2 2 1 SCO1/SenC AhpC-TSA PF00578.16 gi|284176252|ref|YP_003406529.1| - 0.00071 19.2 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|284176252|ref|YP_003406529.1| - 0.0039 16.7 0.0 0.059 12.9 0.0 2.2 2 0 0 2 2 2 1 Redoxin Nop14 PF04147.7 gi|284176252|ref|YP_003406529.1| - 2.6 5.8 9.0 2.9 5.7 6.2 1.0 1 0 0 1 1 1 0 Nop14-like family Redoxin PF08534.5 gi|284176253|ref|YP_003406530.1| - 5e-12 45.5 0.0 6.6e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin PF00085.15 gi|284176253|ref|YP_003406530.1| - 1.5e-07 31.0 0.0 5.1e-06 26.1 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin AhpC-TSA PF00578.16 gi|284176253|ref|YP_003406530.1| - 1e-06 28.4 0.0 1.4e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.1 gi|284176253|ref|YP_003406530.1| - 0.00038 20.5 0.0 0.00049 20.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like TAT_signal PF10518.4 gi|284176253|ref|YP_003406530.1| - 1.2 9.2 5.3 2.6 8.2 3.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DsbD PF02683.10 gi|284176254|ref|YP_003406531.1| - 1.2e-10 41.4 15.6 1.5e-10 41.0 10.8 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Tetraspannin PF00335.15 gi|284176254|ref|YP_003406531.1| - 1.1 8.4 8.7 0.78 8.9 4.7 1.7 1 1 0 1 1 1 0 Tetraspanin family FYDLN_acid PF09538.5 gi|284176255|ref|YP_003406532.1| - 0.1 13.1 1.4 0.16 12.5 1.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Zn_Tnp_IS1 PF03811.8 gi|284176255|ref|YP_003406532.1| - 0.94 9.0 2.7 0.8 9.2 0.7 1.7 2 0 0 2 2 2 0 InsA N-terminal domain BUD22 PF09073.5 gi|284176257|ref|YP_003406534.1| - 7.8 5.4 15.9 8.6 5.3 11.0 1.1 1 0 0 1 1 1 0 BUD22 DEAD_assoc PF08494.6 gi|284176258|ref|YP_003406535.1| - 7.5e-39 133.3 0.0 1.8e-38 132.1 0.0 1.7 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|284176258|ref|YP_003406535.1| - 1.8e-29 102.3 0.0 4.8e-29 101.0 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|284176258|ref|YP_003406535.1| - 3.3e-18 65.3 0.0 1e-17 63.7 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|284176258|ref|YP_003406535.1| - 9.5e-07 28.8 0.0 1.8e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|284176258|ref|YP_003406535.1| - 7.3e-05 22.2 0.2 0.00026 20.4 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|284176258|ref|YP_003406535.1| - 0.0021 17.7 1.3 0.019 14.7 0.0 3.2 5 0 0 5 5 5 1 Part of AAA domain SNF2_N PF00176.18 gi|284176258|ref|YP_003406535.1| - 0.0047 15.7 0.0 0.016 14.0 0.0 1.7 2 0 0 2 2 2 1 SNF2 family N-terminal domain UvrD-helicase PF00580.16 gi|284176258|ref|YP_003406535.1| - 0.015 14.5 0.0 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain AAA_22 PF13401.1 gi|284176258|ref|YP_003406535.1| - 0.044 13.9 0.3 0.97 9.5 0.2 3.0 1 1 0 1 1 1 0 AAA domain HATPase_c PF02518.21 gi|284176259|ref|YP_003406536.1| - 4.7e-30 103.5 0.0 2.3e-29 101.3 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|284176259|ref|YP_003406536.1| - 2.6e-23 82.3 0.0 1.8e-12 47.5 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|284176259|ref|YP_003406536.1| - 1.2e-22 79.8 0.0 1.4e-13 50.5 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|284176259|ref|YP_003406536.1| - 1.5e-18 66.8 0.1 5.6e-11 42.4 0.0 2.8 2 0 0 2 2 2 2 PAS fold GAF PF01590.21 gi|284176259|ref|YP_003406536.1| - 3.9e-12 46.5 0.5 1.3e-11 44.8 0.1 2.2 2 1 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|284176259|ref|YP_003406536.1| - 4.8e-12 45.2 0.1 2.2e-07 30.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|284176259|ref|YP_003406536.1| - 1.1e-09 38.0 0.1 1.1e-09 38.0 0.1 3.1 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|284176259|ref|YP_003406536.1| - 1.5e-09 38.5 0.5 4.1e-09 37.0 0.3 1.9 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|284176259|ref|YP_003406536.1| - 2e-09 37.6 0.6 2.3e-08 34.1 0.1 2.7 2 1 0 2 2 2 1 GAF domain PAS_3 PF08447.6 gi|284176259|ref|YP_003406536.1| - 2.7e-08 33.7 0.0 0.0016 18.5 0.0 3.4 3 0 0 3 3 3 2 PAS fold HATPase_c_5 PF14501.1 gi|284176259|ref|YP_003406536.1| - 0.00014 21.4 0.0 0.00027 20.6 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|284176259|ref|YP_003406536.1| - 0.0035 17.1 0.0 0.01 15.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.1 gi|284176259|ref|YP_003406536.1| - 0.048 13.9 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 PAS domain HATPase_c_3 PF13589.1 gi|284176259|ref|YP_003406536.1| - 0.049 13.2 0.0 0.14 11.7 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase bZIP_2 PF07716.10 gi|284176259|ref|YP_003406536.1| - 6.7 6.6 5.7 0.8 9.5 0.7 1.8 2 0 0 2 2 2 0 Basic region leucine zipper PS_Dcarbxylase PF02666.10 gi|284176260|ref|YP_003406537.1| - 1.7e-21 76.4 0.0 1.6e-17 63.4 0.0 2.3 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase HTH_20 PF12840.2 gi|284176261|ref|YP_003406538.1| - 0.04 13.7 0.1 0.1 12.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|284176262|ref|YP_003406539.1| - 9.3e-11 41.2 2.0 2.1e-07 30.5 0.6 2.4 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|284176262|ref|YP_003406539.1| - 1.7e-08 34.0 0.1 0.00018 21.1 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|284176262|ref|YP_003406539.1| - 1.8e-07 31.1 0.0 0.0079 16.2 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_27 PF13463.1 gi|284176262|ref|YP_003406539.1| - 2.7e-07 30.8 0.2 7.7e-05 22.9 0.1 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|284176262|ref|YP_003406539.1| - 1.8e-06 27.3 0.0 0.043 13.4 0.0 2.8 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|284176262|ref|YP_003406539.1| - 1e-05 25.6 0.9 0.022 14.8 0.1 2.7 2 1 1 3 3 2 2 Winged helix-turn helix GPP34 PF05719.6 gi|284176262|ref|YP_003406539.1| - 1.3e-05 25.3 2.5 0.00035 20.7 1.1 2.2 1 1 1 2 2 2 2 Golgi phosphoprotein 3 (GPP34) HTH_Crp_2 PF13545.1 gi|284176262|ref|YP_003406539.1| - 2.2e-05 24.1 0.0 0.17 11.6 0.0 2.4 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain MarR PF01047.17 gi|284176262|ref|YP_003406539.1| - 5.6e-05 22.7 0.0 0.014 15.0 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|284176262|ref|YP_003406539.1| - 0.00058 19.1 0.1 1.3 8.5 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Crp PF00325.15 gi|284176262|ref|YP_003406539.1| - 0.0014 18.0 0.1 0.24 10.9 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_36 PF13730.1 gi|284176262|ref|YP_003406539.1| - 0.0016 18.5 0.0 0.23 11.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|284176262|ref|YP_003406539.1| - 0.005 16.9 0.0 1.7 8.7 0.0 2.4 2 0 0 2 2 2 1 Penicillinase repressor HTH_20 PF12840.2 gi|284176262|ref|YP_003406539.1| - 0.0094 15.7 0.1 3.3 7.5 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.18 gi|284176262|ref|YP_003406539.1| - 0.0096 15.7 0.0 0.093 12.5 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family DUF742 PF05331.6 gi|284176262|ref|YP_003406539.1| - 0.019 14.5 0.0 1 9.0 0.0 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF742) GntR PF00392.16 gi|284176262|ref|YP_003406539.1| - 0.03 13.7 0.1 5.6 6.4 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family DUF123 PF01986.11 gi|284176263|ref|YP_003406540.1| - 0.038 14.1 0.3 0.044 13.8 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function DUF123 Response_reg PF00072.19 gi|284176264|ref|YP_003406541.1| - 9.6e-18 64.2 0.0 1.1e-17 64.0 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Usp PF00582.21 gi|284176266|ref|YP_003406543.1| - 4.5e-08 33.3 0.4 5.5e-08 33.1 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family HTH_27 PF13463.1 gi|284176268|ref|YP_003406545.1| - 0.00023 21.4 0.0 0.00028 21.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|284176268|ref|YP_003406545.1| - 0.007 16.4 0.0 0.017 15.1 0.0 1.6 2 0 0 2 2 2 1 Mrr N-terminal domain HTH_20 PF12840.2 gi|284176268|ref|YP_003406545.1| - 0.019 14.7 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|284176268|ref|YP_003406545.1| - 0.025 14.3 0.0 0.025 14.3 0.0 1.2 1 1 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|284176268|ref|YP_003406545.1| - 0.039 13.6 0.0 0.054 13.1 0.0 1.2 1 1 0 1 1 1 0 MarR family DUF2161 PF09929.4 gi|284176268|ref|YP_003406545.1| - 0.041 13.8 0.0 0.052 13.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2161) HTH_IclR PF09339.5 gi|284176268|ref|YP_003406545.1| - 0.048 13.2 0.0 0.068 12.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.17 gi|284176268|ref|YP_003406545.1| - 0.082 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 MarR family ING PF12998.2 gi|284176269|ref|YP_003406546.1| - 0.031 14.5 0.2 0.041 14.1 0.1 1.3 1 0 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding FliT PF05400.8 gi|284176269|ref|YP_003406546.1| - 0.037 14.4 3.3 0.05 14.0 2.3 1.4 1 0 0 1 1 1 0 Flagellar protein FliT Apolipoprotein PF01442.13 gi|284176269|ref|YP_003406546.1| - 0.045 13.2 2.5 0.081 12.4 1.8 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF4404 PF14357.1 gi|284176269|ref|YP_003406546.1| - 0.15 12.4 2.6 0.77 10.2 1.8 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4404) CorA PF01544.13 gi|284176269|ref|YP_003406546.1| - 0.18 10.7 1.9 0.19 10.7 1.3 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein FUSC PF04632.7 gi|284176269|ref|YP_003406546.1| - 0.54 8.6 4.9 0.6 8.4 3.4 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Reo_sigmaC PF04582.7 gi|284176270|ref|YP_003406547.1| - 0.00053 19.2 0.2 0.00067 18.9 0.1 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein Nup54 PF13874.1 gi|284176270|ref|YP_003406547.1| - 0.001 18.7 6.5 0.0027 17.3 0.9 2.4 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 DivIC PF04977.10 gi|284176270|ref|YP_003406547.1| - 0.0038 16.6 7.6 0.0054 16.1 1.4 2.6 1 1 1 2 2 2 2 Septum formation initiator Tropomyosin_1 PF12718.2 gi|284176270|ref|YP_003406547.1| - 0.0048 16.7 9.0 0.0048 16.7 6.3 2.2 1 1 0 2 2 2 1 Tropomyosin like Cep57_CLD_2 PF14197.1 gi|284176270|ref|YP_003406547.1| - 0.0073 16.2 9.1 0.021 14.7 6.3 1.7 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 TMF_TATA_bd PF12325.3 gi|284176270|ref|YP_003406547.1| - 0.0074 16.0 8.9 0.03 14.0 6.1 2.0 1 1 0 1 1 1 1 TATA element modulatory factor 1 TATA binding IncA PF04156.9 gi|284176270|ref|YP_003406547.1| - 0.011 15.3 7.6 0.011 15.3 5.3 2.1 1 1 1 2 2 2 0 IncA protein BicD PF09730.4 gi|284176270|ref|YP_003406547.1| - 0.013 13.9 9.9 0.024 13.0 6.8 1.5 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D TMF_DNA_bd PF12329.3 gi|284176270|ref|YP_003406547.1| - 0.016 15.0 10.2 0.1 12.4 4.0 2.9 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding Spectrin PF00435.16 gi|284176270|ref|YP_003406547.1| - 0.016 15.4 5.0 0.29 11.4 2.6 2.8 2 1 1 3 3 3 0 Spectrin repeat GAS PF13851.1 gi|284176270|ref|YP_003406547.1| - 0.031 13.4 6.7 0.071 12.2 4.7 1.6 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Osmo_CC PF08946.5 gi|284176270|ref|YP_003406547.1| - 0.035 14.1 4.6 0.054 13.5 0.5 2.5 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Fmp27_WPPW PF10359.4 gi|284176270|ref|YP_003406547.1| - 0.037 12.4 4.1 0.055 11.8 2.9 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF4201 PF13870.1 gi|284176270|ref|YP_003406547.1| - 0.039 13.3 3.8 0.052 12.9 2.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) Spc7 PF08317.6 gi|284176270|ref|YP_003406547.1| - 0.059 12.0 6.5 0.023 13.3 0.9 1.8 1 1 1 2 2 2 0 Spc7 kinetochore protein Med4 PF10018.4 gi|284176270|ref|YP_003406547.1| - 0.069 12.5 9.8 0.098 12.0 2.7 2.2 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 V_ATPase_I PF01496.14 gi|284176270|ref|YP_003406547.1| - 0.14 10.0 1.9 0.17 9.7 1.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family APG6 PF04111.7 gi|284176270|ref|YP_003406547.1| - 0.18 10.7 8.8 0.3 10.1 6.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 AAA_13 PF13166.1 gi|284176270|ref|YP_003406547.1| - 0.21 9.9 4.1 0.32 9.3 2.8 1.2 1 0 0 1 1 1 0 AAA domain PilJ PF13675.1 gi|284176270|ref|YP_003406547.1| - 0.34 11.2 3.8 0.97 9.7 2.6 1.9 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term CALCOCO1 PF07888.6 gi|284176270|ref|YP_003406547.1| - 0.45 8.7 8.4 0.62 8.2 5.8 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Atg14 PF10186.4 gi|284176270|ref|YP_003406547.1| - 0.48 9.3 3.6 0.95 8.3 2.5 1.5 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Prefoldin_2 PF01920.15 gi|284176270|ref|YP_003406547.1| - 0.5 10.1 6.4 5 6.9 0.4 2.4 1 1 1 2 2 2 0 Prefoldin subunit HAUS5 PF14817.1 gi|284176270|ref|YP_003406547.1| - 0.62 8.5 6.6 0.88 8.0 4.6 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 Mnd1 PF03962.10 gi|284176270|ref|YP_003406547.1| - 0.71 9.5 7.6 1.6 8.3 5.3 1.6 1 0 0 1 1 1 0 Mnd1 family Cortex-I_coil PF09304.5 gi|284176270|ref|YP_003406547.1| - 0.88 9.6 14.7 2.4 8.2 8.7 2.7 2 1 1 3 3 2 0 Cortexillin I, coiled coil DUF4140 PF13600.1 gi|284176270|ref|YP_003406547.1| - 0.98 9.9 10.6 2.5 8.5 1.2 2.8 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) ADIP PF11559.3 gi|284176270|ref|YP_003406547.1| - 1.1 9.1 10.7 0.33 10.8 1.4 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding bZIP_1 PF00170.16 gi|284176270|ref|YP_003406547.1| - 1.3 9.0 11.0 0.75 9.7 0.4 4.0 2 1 2 4 4 4 0 bZIP transcription factor DUF4200 PF13863.1 gi|284176270|ref|YP_003406547.1| - 1.3 8.9 11.0 3.8 7.4 2.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Phage_GP20 PF06810.6 gi|284176270|ref|YP_003406547.1| - 2 7.8 8.6 0.46 9.9 2.7 2.2 2 1 1 3 3 3 0 Phage minor structural protein GP20 TSC22 PF01166.13 gi|284176270|ref|YP_003406547.1| - 3.9 7.5 7.4 3.5 7.6 1.6 2.8 1 1 2 3 3 3 0 TSC-22/dip/bun family DUF972 PF06156.8 gi|284176270|ref|YP_003406547.1| - 4.7 7.6 6.0 25 5.2 4.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF972) DUF4337 PF14235.1 gi|284176270|ref|YP_003406547.1| - 5.3 6.8 5.7 2.5 7.9 2.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) Spc24 PF08286.6 gi|284176270|ref|YP_003406547.1| - 7.2 6.3 11.3 5.1e+02 0.3 7.9 2.5 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 TMCO5 PF14992.1 gi|284176270|ref|YP_003406547.1| - 7.9 5.5 11.3 18 4.3 7.7 1.5 1 1 0 1 1 1 0 TMCO5 family Cdc6_C PF09079.6 gi|284176271|ref|YP_003406548.1| - 5.4e-19 67.7 0.2 1.4e-18 66.4 0.1 1.7 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|284176271|ref|YP_003406548.1| - 4.4e-15 56.1 1.3 1.2e-14 54.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|284176271|ref|YP_003406548.1| - 1.6e-10 41.2 0.0 3.6e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|284176271|ref|YP_003406548.1| - 1.1e-05 25.3 0.2 2.5e-05 24.0 0.0 1.7 2 0 0 2 2 2 1 Archaeal ATPase AAA PF00004.24 gi|284176271|ref|YP_003406548.1| - 3e-05 24.2 0.1 0.00012 22.2 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|284176271|ref|YP_003406548.1| - 0.00032 20.3 0.0 0.00049 19.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.21 gi|284176271|ref|YP_003406548.1| - 0.0036 16.7 0.6 0.014 14.8 0.0 2.2 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|284176271|ref|YP_003406548.1| - 0.0083 16.4 0.4 0.022 15.0 0.3 1.7 1 0 0 1 1 1 1 AAA domain Miro PF08477.8 gi|284176271|ref|YP_003406548.1| - 0.013 15.9 0.1 0.18 12.2 0.0 2.7 2 1 0 2 2 2 0 Miro-like protein ABC_tran PF00005.22 gi|284176271|ref|YP_003406548.1| - 0.015 15.6 0.0 0.033 14.4 0.0 1.6 1 1 0 1 1 1 0 ABC transporter DUF2075 PF09848.4 gi|284176271|ref|YP_003406548.1| - 0.022 13.7 0.1 0.037 13.0 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DUF2791 PF10923.3 gi|284176271|ref|YP_003406548.1| - 0.024 13.2 0.0 0.046 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) PCP_red PF08369.5 gi|284176271|ref|YP_003406548.1| - 0.029 14.2 0.3 0.029 14.2 0.2 2.9 2 1 1 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit AAA_2 PF07724.9 gi|284176271|ref|YP_003406548.1| - 0.055 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) PhoH PF02562.11 gi|284176271|ref|YP_003406548.1| - 0.075 12.2 0.1 0.34 10.1 0.1 1.8 1 1 0 1 1 1 0 PhoH-like protein AAA_17 PF13207.1 gi|284176271|ref|YP_003406548.1| - 0.11 13.3 3.2 0.43 11.4 2.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|284176271|ref|YP_003406548.1| - 0.27 10.6 3.7 3.3 7.0 0.1 2.7 1 1 2 3 3 3 0 AAA-like domain AAA_32 PF13654.1 gi|284176271|ref|YP_003406548.1| - 0.31 9.6 3.5 0.33 9.5 0.2 2.4 3 1 1 4 4 4 0 AAA domain Peptidase_S9 PF00326.16 gi|284176272|ref|YP_003406549.1| - 2.2e-16 59.7 0.2 5.7e-11 42.0 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_3 PF07859.8 gi|284176272|ref|YP_003406549.1| - 7.3e-16 58.3 8.3 9.5e-08 31.8 3.4 3.0 2 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|284176272|ref|YP_003406549.1| - 1.8e-10 40.7 1.1 2.9e-10 40.0 0.7 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family COesterase PF00135.23 gi|284176272|ref|YP_003406549.1| - 3.2e-08 32.7 0.3 2e-07 30.0 0.2 1.9 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_6 PF12697.2 gi|284176272|ref|YP_003406549.1| - 4.3e-06 26.7 7.8 7.1e-06 26.0 5.4 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|284176272|ref|YP_003406549.1| - 0.0018 17.7 0.5 0.3 10.4 0.4 2.2 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_2 PF02230.11 gi|284176272|ref|YP_003406549.1| - 0.0045 16.4 0.0 0.014 14.8 0.0 1.7 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase LIP PF03583.9 gi|284176272|ref|YP_003406549.1| - 0.02 14.0 0.8 0.76 8.9 0.0 2.5 2 1 0 2 2 2 0 Secretory lipase FSH1 PF03959.8 gi|284176272|ref|YP_003406549.1| - 0.047 13.1 0.0 0.065 12.6 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) TFIIB PF00382.14 gi|284176274|ref|YP_003406551.1| - 1.6e-38 130.3 0.1 7e-20 70.6 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|284176274|ref|YP_003406551.1| - 9.6e-17 60.0 3.5 2e-16 59.0 2.5 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|284176274|ref|YP_003406551.1| - 0.00012 21.6 0.0 0.004 16.7 0.0 2.2 1 1 1 2 2 2 1 Cyclin, N-terminal domain Ribosomal_S27e PF01667.12 gi|284176274|ref|YP_003406551.1| - 0.012 15.1 0.2 0.029 13.9 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein S27 DZR PF12773.2 gi|284176274|ref|YP_003406551.1| - 0.04 13.7 0.5 0.1 12.4 0.3 1.7 1 0 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|284176274|ref|YP_003406551.1| - 0.058 12.8 0.3 0.13 11.7 0.2 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|284176274|ref|YP_003406551.1| - 0.073 12.3 0.3 0.17 11.1 0.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain GATA PF00320.22 gi|284176274|ref|YP_003406551.1| - 0.92 8.9 4.2 18 4.7 0.7 2.8 2 1 0 2 2 2 0 GATA zinc finger HTH_20 PF12840.2 gi|284176275|ref|YP_003406552.1| - 0.0004 20.1 0.1 0.009 15.7 0.1 2.6 1 1 2 3 3 3 1 Helix-turn-helix domain 7TMR-DISM_7TM PF07695.6 gi|284176275|ref|YP_003406552.1| - 0.0065 16.1 0.0 0.0088 15.7 0.0 1.1 1 0 0 1 1 1 1 7TM diverse intracellular signalling Thymopoietin PF08198.6 gi|284176275|ref|YP_003406552.1| - 0.061 12.8 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Thymopoietin protein HTH_11 PF08279.7 gi|284176275|ref|YP_003406552.1| - 0.063 12.9 0.1 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain DUF1495 PF07381.6 gi|284176275|ref|YP_003406552.1| - 0.083 12.5 0.1 1.6 8.4 0.0 2.4 1 1 1 2 2 2 0 Winged helix DNA-binding domain (DUF1495) FixQ PF05545.6 gi|284176275|ref|YP_003406552.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ DUF3040 PF11239.3 gi|284176275|ref|YP_003406552.1| - 0.13 12.3 0.3 0.32 11.0 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Glycos_transf_1 PF00534.15 gi|284176276|ref|YP_003406553.1| - 3.8e-38 130.5 0.0 9.9e-38 129.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284176276|ref|YP_003406553.1| - 5.7e-21 75.0 0.1 2.6e-20 72.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|284176276|ref|YP_003406553.1| - 1.2e-14 54.3 0.5 4.8e-14 52.3 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|284176276|ref|YP_003406553.1| - 4.7e-07 29.7 0.0 8.5e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|284176276|ref|YP_003406553.1| - 5.2e-05 23.4 0.1 5.2e-05 23.4 0.1 2.4 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Beta_helix PF13229.1 gi|284176277|ref|YP_003406554.1| - 0.013 15.2 10.4 0.086 12.5 3.3 3.2 2 1 1 3 3 3 0 Right handed beta helix region TAT_signal PF10518.4 gi|284176277|ref|YP_003406554.1| - 0.038 13.9 1.7 0.12 12.4 1.2 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Beta_helix PF13229.1 gi|284176278|ref|YP_003406555.1| - 0.025 14.3 21.3 0.5 10.1 14.8 2.2 1 1 0 1 1 1 0 Right handed beta helix region DUF2190 PF09956.4 gi|284176278|ref|YP_003406555.1| - 0.21 11.3 4.8 0.12 12.1 1.1 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2190) DUF2678 PF10856.3 gi|284176279|ref|YP_003406556.1| - 0.59 9.8 4.1 0.21 11.3 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2678) Acetyltransf_9 PF13527.1 gi|284176282|ref|YP_003406559.1| - 9.3e-18 64.3 0.0 2.2e-17 63.0 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284176282|ref|YP_003406559.1| - 0.00031 20.8 0.0 0.00088 19.3 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Phosphodiest PF01663.17 gi|284176283|ref|YP_003406560.1| - 2.7e-48 165.1 0.2 4.9e-48 164.3 0.1 1.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1859 PF08948.5 gi|284176283|ref|YP_003406560.1| - 0.032 13.9 0.2 0.14 11.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1859) Polysacc_deac_1 PF01522.16 gi|284176284|ref|YP_003406561.1| - 1.2e-08 34.6 0.0 3.1e-08 33.2 0.0 1.7 2 0 0 2 2 2 1 Polysaccharide deacetylase GFO_IDH_MocA PF01408.17 gi|284176285|ref|YP_003406562.1| - 6.3e-27 94.4 0.1 1.3e-26 93.5 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284176285|ref|YP_003406562.1| - 3.9e-09 36.3 0.0 1.7e-08 34.2 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|284176285|ref|YP_003406562.1| - 0.003 17.8 0.1 0.0056 16.9 0.1 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|284176285|ref|YP_003406562.1| - 0.033 13.1 0.2 0.051 12.5 0.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase CoA_binding_2 PF13380.1 gi|284176285|ref|YP_003406562.1| - 0.059 13.5 0.2 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 CoA binding domain 2-Hacid_dh_C PF02826.14 gi|284176285|ref|YP_003406562.1| - 0.087 11.9 0.1 0.67 9.0 0.0 2.0 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF362 PF04015.7 gi|284176286|ref|YP_003406563.1| - 0.0004 19.9 0.0 0.58 9.5 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF362) Epimerase PF01370.16 gi|284176287|ref|YP_003406564.1| - 1.7e-33 116.0 0.0 5.4e-33 114.3 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284176287|ref|YP_003406564.1| - 5.7e-28 97.4 0.0 7.3e-28 97.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|284176287|ref|YP_003406564.1| - 4.3e-24 85.5 0.1 8.1e-24 84.6 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|284176287|ref|YP_003406564.1| - 1.4e-19 69.9 0.0 2.1e-12 46.5 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.12 gi|284176287|ref|YP_003406564.1| - 2.2e-12 46.4 0.0 4.2e-12 45.5 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|284176287|ref|YP_003406564.1| - 5.4e-07 29.1 0.0 8.8e-07 28.4 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|284176287|ref|YP_003406564.1| - 8.7e-07 29.0 0.1 8.7e-07 29.0 0.1 2.4 3 1 0 3 3 3 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|284176287|ref|YP_003406564.1| - 4.9e-06 25.6 0.0 3.2e-05 22.9 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Glyco_trans_1_4 PF13692.1 gi|284176288|ref|YP_003406565.1| - 5.3e-11 42.8 0.1 1e-10 41.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|284176288|ref|YP_003406565.1| - 6.6e-10 39.3 0.3 6.6e-10 39.3 0.2 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|284176288|ref|YP_003406565.1| - 2.2e-09 36.9 0.0 3.2e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|284176288|ref|YP_003406565.1| - 0.00013 21.8 0.0 0.00057 19.7 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|284176288|ref|YP_003406565.1| - 0.0034 17.1 0.0 0.0063 16.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|284176288|ref|YP_003406565.1| - 0.094 12.9 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF354 PF04007.7 gi|284176289|ref|YP_003406566.1| - 2.3e-15 56.3 0.0 3.7e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.1 gi|284176289|ref|YP_003406566.1| - 3.4e-05 24.0 2.1 9.1e-05 22.6 0.6 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain LpxB PF02684.10 gi|284176289|ref|YP_003406566.1| - 0.1 11.1 0.0 0.16 10.5 0.0 1.2 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase Usp PF00582.21 gi|284176290|ref|YP_003406567.1| - 8.5e-37 126.4 3.9 9.5e-37 126.3 2.7 1.0 1 0 0 1 1 1 1 Universal stress protein family SIMPL PF04402.9 gi|284176290|ref|YP_003406567.1| - 0.0059 16.4 1.0 0.0083 16.0 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF541) VWA_2 PF13519.1 gi|284176290|ref|YP_003406567.1| - 0.0075 16.3 0.7 0.013 15.6 0.5 1.5 1 1 0 1 1 1 1 von Willebrand factor type A domain AP_endonuc_2 PF01261.19 gi|284176290|ref|YP_003406567.1| - 0.013 14.7 0.9 0.021 14.1 0.6 1.5 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF2563 PF10817.3 gi|284176290|ref|YP_003406567.1| - 0.046 14.1 0.7 1.7 9.1 0.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2563) DXP_reductoisom PF02670.11 gi|284176290|ref|YP_003406567.1| - 0.052 14.0 0.5 0.094 13.2 0.3 1.6 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Dala_Dala_lig_N PF01820.16 gi|284176290|ref|YP_003406567.1| - 0.069 13.4 0.2 0.095 13.0 0.1 1.2 1 0 0 1 1 1 0 D-ala D-ala ligase N-terminus HTH_10 PF04967.7 gi|284176291|ref|YP_003406568.1| - 4.1e-17 61.4 0.0 9.2e-17 60.3 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.5 gi|284176291|ref|YP_003406568.1| - 2.4e-13 50.0 12.7 4.7e-05 23.3 0.1 4.8 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.6 gi|284176291|ref|YP_003406568.1| - 4.4e-10 39.5 0.0 1.2e-09 38.0 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|284176291|ref|YP_003406568.1| - 1.1e-09 38.5 0.0 0.0018 18.5 0.0 3.9 4 0 0 4 4 4 2 PAS domain GAF_2 PF13185.1 gi|284176291|ref|YP_003406568.1| - 5e-09 36.8 14.8 6.8e-06 26.6 0.1 4.3 5 0 0 5 5 5 2 GAF domain GAF_3 PF13492.1 gi|284176291|ref|YP_003406568.1| - 1.8e-08 34.5 2.1 0.0087 16.1 0.0 3.4 3 0 0 3 3 3 2 GAF domain PAS PF00989.19 gi|284176291|ref|YP_003406568.1| - 5.1e-08 32.6 0.0 1.5e-05 24.7 0.0 3.0 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|284176291|ref|YP_003406568.1| - 0.0057 16.4 0.2 34 4.4 0.0 3.8 3 0 0 3 3 3 0 PAS domain HTH_5 PF01022.15 gi|284176291|ref|YP_003406568.1| - 0.0077 15.8 0.0 0.022 14.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_ECF PF07638.6 gi|284176291|ref|YP_003406568.1| - 0.019 14.6 0.1 0.049 13.3 0.0 1.7 1 0 0 1 1 1 0 ECF sigma factor HTH_10 PF04967.7 gi|284176292|ref|YP_003406569.1| - 9.4e-19 66.7 0.0 1.9e-18 65.7 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|284176292|ref|YP_003406569.1| - 1.2e-06 27.7 0.1 2.7e-06 26.5 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|284176292|ref|YP_003406569.1| - 2.2e-06 27.2 0.0 4.9e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284176292|ref|YP_003406569.1| - 4e-06 26.1 0.0 7.1e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|284176292|ref|YP_003406569.1| - 3.4e-05 23.5 0.0 7.3e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.7 gi|284176292|ref|YP_003406569.1| - 0.00028 20.2 0.2 0.0012 18.2 0.1 2.0 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|284176292|ref|YP_003406569.1| - 0.00031 20.2 0.2 0.00075 18.9 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284176292|ref|YP_003406569.1| - 0.0021 17.6 0.0 0.0042 16.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_31 PF13560.1 gi|284176292|ref|YP_003406569.1| - 0.0025 17.9 0.2 0.011 15.9 0.0 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain Phage_CI_repr PF07022.8 gi|284176292|ref|YP_003406569.1| - 0.006 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_23 PF13384.1 gi|284176292|ref|YP_003406569.1| - 0.0066 16.0 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|284176292|ref|YP_003406569.1| - 0.01 15.3 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.6 gi|284176292|ref|YP_003406569.1| - 0.019 14.6 0.2 0.032 13.9 0.1 1.5 1 1 0 1 1 1 0 ECF sigma factor HTH_37 PF13744.1 gi|284176292|ref|YP_003406569.1| - 0.021 14.6 0.0 0.037 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|284176292|ref|YP_003406569.1| - 0.025 14.2 0.0 0.047 13.3 0.0 1.5 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.14 gi|284176292|ref|YP_003406569.1| - 0.03 14.2 0.0 0.06 13.3 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.22 gi|284176292|ref|YP_003406569.1| - 0.047 13.4 0.0 0.15 11.8 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_19 PF12844.2 gi|284176292|ref|YP_003406569.1| - 0.061 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|284176292|ref|YP_003406569.1| - 0.062 12.9 0.2 0.19 11.3 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|284176292|ref|YP_003406569.1| - 0.075 13.3 0.2 2.2 8.6 0.0 2.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|284176292|ref|YP_003406569.1| - 0.08 12.7 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain UPF0122 PF04297.9 gi|284176292|ref|YP_003406569.1| - 0.1 12.6 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_22 PF13309.1 gi|284176292|ref|YP_003406569.1| - 0.11 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain DUF3534 PF12053.3 gi|284176292|ref|YP_003406569.1| - 0.11 12.3 1.1 0.26 11.1 0.8 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3534) HTH_30 PF13556.1 gi|284176292|ref|YP_003406569.1| - 0.13 11.9 0.0 0.45 10.1 0.0 1.8 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain P22_Cro PF14549.1 gi|284176292|ref|YP_003406569.1| - 0.15 11.7 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro